Psyllid ID: psy1342

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140----
Protein Sequence
MVAWIQMTVKPELFKFKCVSISSPQTRRRPESLESTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKAVSINP
Secondary Structure (PSIPRED)
cHHHHHHHHcccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccEEcccccHHHHHHHHcHHHHHHHHHcccccccEEEccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEcHHHHEEEEEEEEccccccccccccccHcHccccccccEEccccccccccccccccccccccccccEccccccccccccccHHHHHHHcccccccEEEHHHHHHcccHHHHHHHHHcccccccEEEEEEEccccc
Coil and Loop (DISEMBL)
mvawiqmtvkpelfkfkcvsisspqtrrrpeslestnkkktrklrghvshghgrvgkhrkhpggrgnaggmhhhrinfdkyhpgyfgkvgmrnyhikknakwcpiinldrlWTLVSDQTREkykdnkegkapiidCVKAVSINP
Flexible Loop (DISEMBL)
mvawiqmtvkpelfkfkcvsisspqtrrrpeslestnkkktrklrghvshghgrvgkhrkhpgGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKKnakwcpiinlDRLWTLVSDQTRekykdnkegkapiidcvkavsinp
Low Complexity Region (SEG)
MVAWIQMTVKPELFKFKCVSISSPQTRRRPESLESTNKKKTRKLrghvshghgrvgkhrkhpggrgNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKAVSINP
Disordered region (IsUnstruct)
**AWIQMTVKPELFKFKCVSI**************************************************HHHRINFDKYHPGYFGKVGMRNYHIKKNAKWCPIINLDRLWTLVSDQ*************PIIDCVKA*****
Disordered Region (DISOPRED)
*VAWIQMTVKPELFK*****************************************************GGMHHHRINFDKYHPGYFGKVGMRNYHIKKNAKWCPIINLDRLWTLVSDQTR*******EGKAPIIDCVKAVSI**
Disordered Region (DISEMBL)
MVAWIQMTVKPELFKFKCVSI**********************************************AGGMHHHRINFDKYHPGYFGKVGMRNYHIKKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKAVSINP
Disordered Region (DISPRO)
MVAWIQMTVKPELFKFKCVSISSP***********************************************HHHRINFDKYHPGYFGKVGMRNYHIKKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKAVSI**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVAWIQMTVKPELFKFKCVSISSPQTRRRPESLESTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKAVSINP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	144	2.2.26 [Sep-21-2011]
Q27021	148	60S ribosomal protein L27	N/A	N/A	0.729	0.709	0.828	6e-49
P47830	148	60S ribosomal protein L27	N/A	N/A	0.701	0.682	0.811	2e-44
Q56K03	148	60S ribosomal protein L27	yes	N/A	0.701	0.682	0.782	7e-44
P14115	148	60S ribosomal protein L27	yes	N/A	0.701	0.682	0.782	1e-43
P18445	148	60S ribosomal protein L27	yes	N/A	0.701	0.682	0.782	1e-43
Q4R723	148	60S ribosomal protein L27	N/A	N/A	0.701	0.682	0.772	2e-43
Q5REY2	148	60S ribosomal protein L27	yes	N/A	0.701	0.682	0.762	3e-43
P46776	148	60S ribosomal protein L27	yes	N/A	0.701	0.682	0.762	3e-43
Q5R1X0	148	60S ribosomal protein L27	yes	N/A	0.701	0.682	0.762	4e-43
P41092	149	60S ribosomal protein L27	yes	N/A	0.736	0.711	0.688	4e-39

>sp|Q27021|RL27A_TENMO 60S ribosomal protein L27a OS=Tenebrio molitor GN=RpL27A PE=2 SV=1

 Score =  192 bits (488), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 87/105 (82%), Positives = 100/105 (95%)

Query: 35  STNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNY 94
           ST+KKKTRKLRGHVSHGHGR+GKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGK+GMRNY
Sbjct: 2   STHKKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKLGMRNY 61

Query: 95  HIKKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
           H+++N+KW P INLD+LWTLVS+QTR KY+++ EGKAP+ID VKA
Sbjct: 62  HLRRNSKWAPAINLDKLWTLVSEQTRSKYQNHPEGKAPVIDIVKA 106

Tenebrio molitor (taxid: 7067)

>sp|P47830|RL27A_XENLA 60S ribosomal protein L27a OS=Xenopus laevis GN=rpl27a PE=2 SV=2

 Score =  177 bits (449), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 82/101 (81%), Positives = 90/101 (89%)

Query: 39  KKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKK 98
           +KTRKLRGHVSHGHGR+GKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMR+YH+KK
Sbjct: 6   RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKK 65

Query: 99  NAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
           N  +CP INLD+LWTLVS+QTR  +  N EG APIID V A
Sbjct: 66  NQSFCPTINLDKLWTLVSEQTRLNHAKNLEGPAPIIDAVHA 106

Xenopus laevis (taxid: 8355)

>sp|Q56K03|RL27A_BOVIN 60S ribosomal protein L27a OS=Bos taurus GN=RPL27A PE=2 SV=3

 Score =  175 bits (444), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 79/101 (78%), Positives = 90/101 (89%)

Query: 39  KKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKK 98
           +KTRKLRGHVSHGHGR+GKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMR+YH+K+
Sbjct: 6   RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKR 65

Query: 99  NAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
           N  +CP +NLD+LWTLVS+QTR     NK G APIID V++
Sbjct: 66  NQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRS 106

Bos taurus (taxid: 9913)

>sp|P14115|RL27A_MOUSE 60S ribosomal protein L27a OS=Mus musculus GN=Rpl27a PE=2 SV=5

 Score =  174 bits (442), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 79/101 (78%), Positives = 90/101 (89%)

Query: 39  KKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKK 98
           +KTRKLRGHVSHGHGR+GKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMR+YH+K+
Sbjct: 6   RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKR 65

Query: 99  NAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
           N  +CP +NLD+LWTLVS+QTR     NK G APIID V++
Sbjct: 66  NQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGVAPIIDVVRS 106

Mus musculus (taxid: 10090)

>sp|P18445|RL27A_RAT 60S ribosomal protein L27a OS=Rattus norvegicus GN=Rpl27a PE=1 SV=3

 Score =  174 bits (442), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 79/101 (78%), Positives = 90/101 (89%)

Query: 39  KKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKK 98
           +KTRKLRGHVSHGHGR+GKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMR+YH+K+
Sbjct: 6   RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKR 65

Query: 99  NAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
           N  +CP +NLD+LWTLVS+QTR     NK G APIID V++
Sbjct: 66  NQSFCPTVNLDKLWTLVSEQTRVNAAKNKNGVAPIIDVVRS 106

Rattus norvegicus (taxid: 10116)

>sp|Q4R723|RL27A_MACFA 60S ribosomal protein L27a OS=Macaca fascicularis GN=RPL27A PE=2 SV=1

 Score =  174 bits (441), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 78/101 (77%), Positives = 90/101 (89%)

Query: 39  KKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKK 98
           +KTRKLRGHVSHGHGR+GKHRKHPGGRGNAGG+HHHRINFDKYHPGYFGKVGMR+YH+K+
Sbjct: 6   RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMRHYHLKR 65

Query: 99  NAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
           N  +CP +NLD+LWTLVS+QTR     NK G APIID V++
Sbjct: 66  NQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRS 106

Macaca fascicularis (taxid: 9541)

>sp|Q5REY2|RL27A_PONAB 60S ribosomal protein L27a OS=Pongo abelii GN=RPL27A PE=2 SV=3

 Score =  173 bits (438), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 77/101 (76%), Positives = 90/101 (89%)

Query: 39  KKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKK 98
           +KTRKLRGHVSHGHGR+GKHRKHPGGRGNAGG+HHHRINFDKYHPGYFGKVGM++YH+K+
Sbjct: 6   RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKR 65

Query: 99  NAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
           N  +CP +NLD+LWTLVS+QTR     NK G APIID V++
Sbjct: 66  NQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRS 106

Pongo abelii (taxid: 9601)

>sp|P46776|RL27A_HUMAN 60S ribosomal protein L27a OS=Homo sapiens GN=RPL27A PE=1 SV=2

 Score =  173 bits (438), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 77/101 (76%), Positives = 90/101 (89%)

Query: 39  KKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKK 98
           +KTRKLRGHVSHGHGR+GKHRKHPGGRGNAGG+HHHRINFDKYHPGYFGKVGM++YH+K+
Sbjct: 6   RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKR 65

Query: 99  NAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
           N  +CP +NLD+LWTLVS+QTR     NK G APIID V++
Sbjct: 66  NQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRS 106

Homo sapiens (taxid: 9606)

>sp|Q5R1X0|RL27A_PANTR 60S ribosomal protein L27a OS=Pan troglodytes GN=RPL27A PE=2 SV=3

 Score =  172 bits (437), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 77/101 (76%), Positives = 90/101 (89%)

Query: 39  KKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKK 98
           +KTRKLRGHVSHGHGR+GKHRKHPGGRGNAGG+HHHRINFDKYHPGYFGKVGM++YH+K+
Sbjct: 6   RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKR 65

Query: 99  NAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
           N  +CP +NLD+LWTLVS+QTR     NK G APIID V++
Sbjct: 66  NQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRS 106

Pan troglodytes (taxid: 9598)

>sp|P41092|RL27A_DROME 60S ribosomal protein L27a OS=Drosophila melanogaster GN=RpL27A PE=2 SV=2

 Score =  159 bits (403), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 73/106 (68%), Positives = 88/106 (83%)

Query: 33  LESTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMR 92
           + +  +KKTRKLRGHVSHGHGR+GKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMR
Sbjct: 1   MSNIKRKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMR 60

Query: 93  NYHIKKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVK 138
           N+H+++  K+ P INLD+LW+LV  +   + +  K  KAP+ID VK
Sbjct: 61  NFHLRRQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVK 106

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
110671480	148	putative ribosomal protein L27Ae [Diapho	0.729	0.709	1.0	1e-55
70909821	148	ribosomal protein L27Ae [Biphyllus lunat	0.729	0.709	0.876	2e-49
264667411	148	ribosomal protein L27A [Chrysomela tremu	0.729	0.709	0.866	1e-48
149689026	148	putative ribosomal protein L15/l27 [Tria	0.729	0.709	0.838	5e-48
342905889	148	ribosomal protein L15/l27 [Rhodnius prol	0.729	0.709	0.838	6e-48
70909825	148	ribosomal protein L27Ae [Curculio glandi	0.729	0.709	0.847	1e-47
90820018	148	putative ribosomal protein L27Ae [Grapho	0.729	0.709	0.838	1e-47
91080583	148	PREDICTED: similar to ribosomal protein	0.729	0.709	0.847	1e-47
332373916	148	unknown [Dendroctonus ponderosae]	0.729	0.709	0.847	2e-47
70909819	148	ribosomal protein L27Ae [Agriotes lineat	0.729	0.709	0.828	3e-47

>gi|110671480|gb|ABG81991.1| putative ribosomal protein L27Ae [Diaphorina citri]

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 105/105 (100%), Positives = 105/105 (100%)

Query: 35  STNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNY 94
           STNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNY
Sbjct: 2   STNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNY 61

Query: 95  HIKKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
           HIKKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA
Sbjct: 62  HIKKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 106

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|70909821|emb|CAJ17397.1| ribosomal protein L27Ae [Biphyllus lunatus]

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 92/105 (87%), Positives = 100/105 (95%)

Query: 35  STNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNY 94
           ST+KKKTRKLRGHVSHGHGR+GKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGK+GMRNY
Sbjct: 2   STHKKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKLGMRNY 61

Query: 95  HIKKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
           H+++N KWCP INLDRLWTLVSDQTR KYKDN +GKAP+ID VKA
Sbjct: 62  HLRRNTKWCPSINLDRLWTLVSDQTRLKYKDNADGKAPVIDIVKA 106

Source: Biphyllus lunatus

Species: Biphyllus lunatus

Genus: Biphyllus

Family: Biphyllidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|264667411|gb|ACY71291.1| ribosomal protein L27A [Chrysomela tremula]

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 91/105 (86%), Positives = 99/105 (94%)

Query: 35  STNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNY 94
           ST+KKKTRKLRGHVSHGHGR+GKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGK+GMRNY
Sbjct: 2   STHKKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKLGMRNY 61

Query: 95  HIKKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
           H++KN KW P INLD+LWTLVS+QTR KYKDN EGKAP+ID VKA
Sbjct: 62  HLRKNTKWSPAINLDKLWTLVSEQTRIKYKDNAEGKAPVIDIVKA 106

Source: Chrysomela tremula

Species: Chrysomela tremula

Genus: Chrysomela

Family: Chrysomelidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|149689026|gb|ABR27828.1| putative ribosomal protein L15/l27 [Triatoma infestans]

 Score =  195 bits (496), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 88/105 (83%), Positives = 100/105 (95%)

Query: 35  STNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNY 94
           ST+KKKTRKLRGHVSHGHGR+GKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGK+GMRNY
Sbjct: 2   STSKKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKLGMRNY 61

Query: 95  HIKKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
           H+++N K+CP INLD+LWTLV++QTR KYKDN EGKAP+ID V+A
Sbjct: 62  HLRRNQKFCPTINLDKLWTLVTEQTRLKYKDNTEGKAPVIDAVRA 106

Source: Triatoma infestans

Species: Triatoma infestans

Genus: Triatoma

Family: Reduviidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|342905889|gb|AEL79228.1| ribosomal protein L15/l27 [Rhodnius prolixus]

 Score =  195 bits (495), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 88/105 (83%), Positives = 100/105 (95%)

Query: 35  STNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNY 94
           ST+KKKTRKLRGHVSHGHGR+GKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGK+GMRNY
Sbjct: 2   STSKKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKLGMRNY 61

Query: 95  HIKKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
           H+++N K+CP INLD+LWTLV++QTR KYKDN EGKAP+ID V+A
Sbjct: 62  HLRRNQKFCPTINLDKLWTLVTEQTRLKYKDNAEGKAPVIDAVRA 106

Source: Rhodnius prolixus

Species: Rhodnius prolixus

Genus: Rhodnius

Family: Reduviidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|70909825|emb|CAJ17399.1| ribosomal protein L27Ae [Curculio glandium]

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 89/105 (84%), Positives = 100/105 (95%)

Query: 35  STNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNY 94
           ST+KKKTRKLRGHVSHGHGR+GKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGK+GMRNY
Sbjct: 2   STHKKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKLGMRNY 61

Query: 95  HIKKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
           H+++N+KW P INLD+LWTLVS+QTR KYKD+ EGKAP+ID VKA
Sbjct: 62  HVRRNSKWSPAINLDKLWTLVSEQTRLKYKDHPEGKAPVIDIVKA 106

Source: Curculio glandium

Species: Curculio glandium

Genus: Curculio

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|90820018|gb|ABD98766.1| putative ribosomal protein L27Ae [Graphocephala atropunctata]

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 88/105 (83%), Positives = 100/105 (95%)

Query: 35  STNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNY 94
           ST+KKKTRKLRGHVSHGHGR+GKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGK+GMRNY
Sbjct: 2   STSKKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKLGMRNY 61

Query: 95  HIKKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
           H+++N K+CP +NLD+LWTLVS+QTR KYKD+ EGKAP+ID VKA
Sbjct: 62  HVRRNQKFCPTVNLDKLWTLVSEQTRLKYKDHPEGKAPVIDVVKA 106

Source: Graphocephala atropunctata

Species: Graphocephala atropunctata

Genus: Graphocephala

Family: Cicadellidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91080583|ref|XP_973590.1| PREDICTED: similar to ribosomal protein L27Ae [Tribolium castaneum] gi|270005809|gb|EFA02257.1| hypothetical protein TcasGA2_TC007920 [Tribolium castaneum]

 Score =  193 bits (491), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 89/105 (84%), Positives = 100/105 (95%)

Query: 35  STNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNY 94
           ST+KKKTRKLRGHVSHGHGR+GKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGK+GMRNY
Sbjct: 2   STHKKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKLGMRNY 61

Query: 95  HIKKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
           H+++N+KW P INLD+LWTLVS+QTR KYKD+ EGKAP+ID VKA
Sbjct: 62  HLRRNSKWSPSINLDKLWTLVSEQTRLKYKDHPEGKAPVIDIVKA 106

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332373916|gb|AEE62099.1| unknown [Dendroctonus ponderosae]

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 89/105 (84%), Positives = 98/105 (93%)

Query: 35  STNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNY 94
           ST+KKKTRKLRGHVSHGHGR+GKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGK+GMRNY
Sbjct: 2   STHKKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKLGMRNY 61

Query: 95  HIKKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
           H+++N KW P INLD+LWTLVSDQTR KYK + EGKAP+ID VKA
Sbjct: 62  HVRRNTKWAPAINLDKLWTLVSDQTRLKYKSHPEGKAPVIDIVKA 106

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|70909819|emb|CAJ17396.1| ribosomal protein L27Ae [Agriotes lineatus]

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 87/105 (82%), Positives = 100/105 (95%)

Query: 35  STNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNY 94
           ST+KKKTRKLRGHVSHGHGR+GKHRKHPGGRGNAGGMHHHRIN+DKYHPGYFGK+GMRNY
Sbjct: 2   STHKKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINYDKYHPGYFGKLGMRNY 61

Query: 95  HIKKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
           H+++N+KWCP INLD+LWTLVS+QTR KYK+  +GKAP+ID VKA
Sbjct: 62  HLRRNSKWCPTINLDKLWTLVSEQTRLKYKNEADGKAPVIDIVKA 106

Source: Agriotes lineatus

Species: Agriotes lineatus

Genus: Agriotes

Family: Elateridae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
ZFIN|ZDB-GENE-030131-8670	148	zgc:77235 "zgc:77235" [Danio r	0.722	0.702	0.576	2.1e-29
UNIPROTKB|F1NBX4	148	RPL27A "Uncharacterized protei	0.701	0.682	0.564	1.2e-28
UNIPROTKB|E9PLL6	108	RPL27A "60S ribosomal protein	0.715	0.953	0.563	1.9e-28
UNIPROTKB|G1K1B4	147	RPL27A "60S ribosomal protein	0.701	0.687	0.574	3.1e-28
UNIPROTKB|Q56K03	148	RPL27A "60S ribosomal protein	0.701	0.682	0.574	3.1e-28
UNIPROTKB|E2RI34	148	RPL27A "Uncharacterized protei	0.701	0.682	0.574	3.1e-28
RGD|1309771	148	Rpl27a "ribosomal protein L27a	0.701	0.682	0.574	3.1e-28
UNIPROTKB|F1RGC0	148	LOC100739437 "Uncharacterized	0.701	0.682	0.574	3.9e-28
RGD|1562402	148	RGD1562402 "similar to 60S rib	0.701	0.682	0.564	6.4e-28
UNIPROTKB|E1BE42	148	E1BE42 "Uncharacterized protei	0.701	0.682	0.564	8.2e-28

ZFIN|ZDB-GENE-030131-8670 zgc:77235 "zgc:77235" [Danio rerio (taxid:7955)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 60/104 (57%), Positives = 69/104 (66%)

Query:    36 TNKKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGMHHHRINFDKYHPGYFGKVGMRNYH 95
             T K KTRKL                      NAGG+HHHRINFDKYHPGYFGKVGMR+YH
Sbjct:     3 TKKSKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMRHYH 62

Query:    96 IKKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
             +K+N  +CP INLD+LWTLVS+QTR  Y    +G APIID V+A
Sbjct:    63 LKRNTTFCPTINLDKLWTLVSEQTRVNYSQKPDGPAPIIDVVRA 106

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|F1NBX4 RPL27A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 57/101 (56%), Positives = 70/101 (69%)

Query:    39 KKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKK 98
             +KTRKL                      NAGGMHHHRINFDKYHPGYFGKVGMR+YH+K+
Sbjct:     6 RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKR 65

Query:    99 NAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
             N K+CP +NLD+LWTLV++QTR  Y  N+ G AP+ID V++
Sbjct:    66 NQKFCPTVNLDKLWTLVTEQTRLNYAKNQAGLAPVIDVVRS 106

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

UNIPROTKB|E9PLL6 RPL27A "60S ribosomal protein L27a" [Homo sapiens (taxid:9606)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 58/103 (56%), Positives = 70/103 (67%)

Query:    39 KKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKK 98
             +KTRKL                      NAGG+HHHRINFDKYHPGYFGKVGM++YH+K+
Sbjct:     6 RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKR 65

Query:    99 NAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKAVS 141
             N  +CP +NLD+LWTLVS+QTR     NK G APIID V++VS
Sbjct:    66 NQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSVS 108

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|G1K1B4 RPL27A "60S ribosomal protein L27a" [Bos taurus (taxid:9913)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 58/101 (57%), Positives = 68/101 (67%)

Query:    39 KKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKK 98
             +KTRKL                      NAGGMHHHRINFDKYHPGYFGKVGMR+YH+K+
Sbjct:     5 RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKR 64

Query:    99 NAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
             N  +CP +NLD+LWTLVS+QTR     NK G APIID V++
Sbjct:    65 NQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRS 105

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q56K03 RPL27A "60S ribosomal protein L27a" [Bos taurus (taxid:9913)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 58/101 (57%), Positives = 68/101 (67%)

Query:    39 KKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKK 98
             +KTRKL                      NAGGMHHHRINFDKYHPGYFGKVGMR+YH+K+
Sbjct:     6 RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKR 65

Query:    99 NAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
             N  +CP +NLD+LWTLVS+QTR     NK G APIID V++
Sbjct:    66 NQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRS 106

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E2RI34 RPL27A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 58/101 (57%), Positives = 68/101 (67%)

Query:    39 KKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKK 98
             +KTRKL                      NAGGMHHHRINFDKYHPGYFGKVGMR+YH+K+
Sbjct:     6 RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKR 65

Query:    99 NAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
             N  +CP +NLD+LWTLVS+QTR     NK G APIID V++
Sbjct:    66 NQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRS 106

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

RGD|1309771 Rpl27a "ribosomal protein L27a" [Rattus norvegicus (taxid:10116)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 58/101 (57%), Positives = 68/101 (67%)

Query:    39 KKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKK 98
             +KTRKL                      NAGGMHHHRINFDKYHPGYFGKVGMR+YH+K+
Sbjct:     6 RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKR 65

Query:    99 NAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
             N  +CP +NLD+LWTLVS+QTR     NK G APIID V++
Sbjct:    66 NQSFCPTVNLDKLWTLVSEQTRVNAAKNKNGVAPIIDVVRS 106

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISO

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

GO:0022626 "cytosolic ribosome" evidence=ISO

UNIPROTKB|F1RGC0 LOC100739437 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 58/101 (57%), Positives = 68/101 (67%)

Query:    39 KKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKK 98
             +KTRKL                      NAGGMHHHRINFDKYHPGYFGKVGMR+YH+K+
Sbjct:     6 RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKR 65

Query:    99 NAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
             N  +CP +NLD+LWTLVS+QTR     NK G APIID V++
Sbjct:    66 NQSFCPTVNLDKLWTLVSEQTRINAAKNKTGAAPIIDVVRS 106

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

RGD|1562402 RGD1562402 "similar to 60S ribosomal protein L27a" [Rattus norvegicus (taxid:10116)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 57/101 (56%), Positives = 68/101 (67%)

Query:    39 KKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKK 98
             +KTRKL                      NAGGMHHHRINFDKYHPGYFGKVG+R+YH+K+
Sbjct:     6 RKTRKLRGHVSHSHGRIGKHRKHPGGLGNAGGMHHHRINFDKYHPGYFGKVGIRHYHLKR 65

Query:    99 NAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
             N  +CP +NLD+LWTLVS+QTR     NK G APIID V++
Sbjct:    66 NQSFCPTVNLDKLWTLVSEQTRVNAAKNKNGVAPIIDVVRS 106

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|E1BE42 E1BE42 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 57/101 (56%), Positives = 68/101 (67%)

Query:    39 KKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKK 98
             +KTRKL                      NAGGMHHHRINFDKYHPGYFGKVGMR+YH+K+
Sbjct:     6 RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKR 65

Query:    99 NAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
             N  +CP +NLD+LWTLVS+QT+     NK G APIID V++
Sbjct:    66 NQSFCPTVNLDKLWTLVSEQTQVNAAKNKTGAAPIIDVVRS 106

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q4R723	RL27A_MACFA	No assigned EC number	0.7722	0.7013	0.6824	N/A	N/A
P47830	RL27A_XENLA	No assigned EC number	0.8118	0.7013	0.6824	N/A	N/A
P36585	RL28A_SCHPO	No assigned EC number	0.625	0.7222	0.7027	yes	N/A
P14115	RL27A_MOUSE	No assigned EC number	0.7821	0.7013	0.6824	yes	N/A
Q5R1X0	RL27A_PANTR	No assigned EC number	0.7623	0.7013	0.6824	yes	N/A
Q29333	RL27A_PIG	No assigned EC number	0.9183	0.3402	0.9074	no	N/A
O01358	RL27A_OSCBR	No assigned EC number	0.7128	0.6805	0.6758	N/A	N/A
P49637	R27A3_ARATH	No assigned EC number	0.6571	0.6944	0.6849	yes	N/A
O62581	RL27A_ENCCU	No assigned EC number	0.5612	0.6736	0.6598	yes	N/A
A1RWR4	RL15_THEPD	No assigned EC number	0.3653	0.6736	0.6423	yes	N/A
P18445	RL27A_RAT	No assigned EC number	0.7821	0.7013	0.6824	yes	N/A
P46776	RL27A_HUMAN	No assigned EC number	0.7623	0.7013	0.6824	yes	N/A
Q27021	RL27A_TENMO	No assigned EC number	0.8285	0.7291	0.7094	N/A	N/A
P48160	RL27A_DICDI	No assigned EC number	0.5728	0.7152	0.6959	yes	N/A
Q9LR33	R27A2_ARATH	No assigned EC number	0.6571	0.6944	0.6849	yes	N/A
P41092	RL27A_DROME	No assigned EC number	0.6886	0.7361	0.7114	yes	N/A
P02406	RL28_YEAST	No assigned EC number	0.6336	0.6944	0.6711	yes	N/A
P57728	RL28B_SCHPO	No assigned EC number	0.6538	0.7222	0.7027	yes	N/A
Q5REY2	RL27A_PONAB	No assigned EC number	0.7623	0.7013	0.6824	yes	N/A
O05643	RL15_SULAC	No assigned EC number	0.3137	0.6527	0.6527	yes	N/A
Q56K03	RL27A_BOVIN	No assigned EC number	0.7821	0.7013	0.6824	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	144
PTZ00160	147	PTZ00160, PTZ00160, 60S ribosomal protein L27a; Pr	3e-61
pfam00828	122	pfam00828, Ribosomal_L18e, Ribosomal protein L18e/	9e-15
PRK06419	148	PRK06419, rpl15p, 50S ribosomal protein L15P; Revi	8e-13
COG0200	152	COG0200, RplO, Ribosomal protein L15 [Translation,	4e-11

>gnl|CDD|185489 PTZ00160, PTZ00160, 60S ribosomal protein L27a; Provisional

 Score =  184 bits (470), Expect = 3e-61
 Identities = 76/104 (73%), Positives = 88/104 (84%), Gaps = 1/104 (0%)

Query: 36  TNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYH 95
           T  KK RK+RGHVSHG+GRVGKHRKHPGGRGNAGG HHHRINFDKYHPGYFGKVGMR++H
Sbjct: 3   TRFKKCRKMRGHVSHGYGRVGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRHFH 62

Query: 96  IKKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
           +KKN  +CP IN+D+LW+LV ++TR KY   K  KAP+ID  KA
Sbjct: 63  LKKNKYYCPTINVDKLWSLVPEETRYKY-AKKGDKAPVIDVTKA 105

Length = 147

>gnl|CDD|216140 pfam00828, Ribosomal_L18e, Ribosomal protein L18e/L15

 Score = 65.7 bits (161), Expect = 9e-15
 Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 12/90 (13%)

Query: 53  GRVGKHRKH--PGGRGNAGGMHHHRINFDKYHPGY--FGKVGMRNYHIKKNAKWCPIINL 108
           G +GK R     GGRG AGG  HH        P Y   GK G R   + K+ K  P +NL
Sbjct: 1   GIIGKTRGRGRKGGRGRAGGQKHH--FEGGQVPLYRRLGKRGFRK--LFKSRKNRPPVNL 56

Query: 109 DRLWTLVSDQTREKYKDNKEGKAPIIDCVK 138
            +L          +  D +     ++  V 
Sbjct: 57  SKLDR--KMLKDGEEVDGE--TLVVVGTVT 82

This family includes eukaryotic L18 as well as prokaryotic L15. Length = 122

>gnl|CDD|235799 PRK06419, rpl15p, 50S ribosomal protein L15P; Reviewed

 Score = 61.0 bits (149), Expect = 8e-13
 Identities = 26/58 (44%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 38 KKKTRKLRGHVSHGHGRVGKHRK--HPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRN 93
          KKK+RKLRG  +HG G    HR     GGRG AG   H      KY P ++GK G + 
Sbjct: 5  KKKSRKLRGSRTHGGGTHKNHRGAGSRGGRGMAGRHKHKWTWVVKYGPDWYGKHGFKR 62

Length = 148

>gnl|CDD|223278 COG0200, RplO, Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]

 Score = 56.9 bits (138), Expect = 4e-11
 Identities = 17/104 (16%), Positives = 25/104 (24%), Gaps = 14/104 (13%)

Query: 38  KKKTRKLRGHVSHGHGRVGKHR--KHPGGRGNAGG---MHHHRINFDKYHPG-----YFG 87
                      +      G        GGRG+ G      H  +                
Sbjct: 4   NDLKPARGSKKTRKRVGRGIGSGLGKTGGRGHKGQKARSGHKWVRPGFEGGQMPLYRRLP 63

Query: 88  KVGMRNYHIKKNAKWC-PIINLDRLWTLVSDQTREKYKDNKEGK 130
           K G  N    K  K    ++NL +L  L+ +         K   
Sbjct: 64  KRGFTN---SKFKKVEYAVVNLGKLAELLPEGEEVTLASLKAAG 104

Length = 152

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	144
2zkr_l	148	Structure Of A Mammalian Ribosomal 60s Subunit With		4e-28
4a17_K	149	T.Thermophila 60s Ribosomal Subunit In Complex With		8e-22
3izs_O	149	Localization Of The Large Subunit Ribosomal Protein		2e-20
3o58_Y	149	Yeast 80s Ribosome. This Entry Consists Of The 60s		3e-20
1s1i_V	148	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		3e-20
3jyw_V	142	Structure Of The 60s Proteins For Eukaryotic Riboso		3e-20
3zf7_b	145	High-resolution Cryo-electron Microscopy Structure		7e-17
3izr_O	144	Localization Of The Large Subunit Ribosomal Protein		1e-16

>pdb|2ZKR|LL Chain l, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 148

Iteration: 1
 Score =  120 bits (300), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 56/101 (55%), Positives = 67/101 (66%)
Query: 39  KKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKK 98
           +KTRKL                      NAGGMHHHRINFDKYHPGYFGKVGM++YH+K+
Sbjct: 6   RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMKHYHLKR 65
Query: 99  NAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
           N  +CP +NLD+ WTLVS+QTR     NK G APIID V++
Sbjct: 66  NQSFCPTVNLDKPWTLVSEQTRVNAAKNKTGVAPIIDVVRS 106

>pdb|4A17|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 149

Iteration: 1
 Score = 99.0 bits (245), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 41/69 (59%), Positives = 57/69 (82%), Gaps = 1/69 (1%)
Query: 71  MHHHRINFDKYHPGYFGKVGMRNYHIKKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGK 130
           MHHHRI  +K+HPGY+GK+GMR +H+KKN   CP++N+D+LW+LVSD TR+KY ++K+ K
Sbjct: 40  MHHHRILMEKWHPGYYGKLGMRTFHLKKNPLHCPVVNIDKLWSLVSDATRQKYAEDKK-K 98
Query: 131 APIIDCVKA 139
            P+ID  KA
Sbjct: 99  VPVIDVTKA 107

>pdb|3IZS|O Chain O, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 149

Iteration: 1
 Score = 94.7 bits (234), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 41/73 (56%), Positives = 54/73 (73%), Gaps = 1/73 (1%)
Query: 68  AGGMHHHRINFDKYHPGYFGKVGMRNYHIKKNAKWCPIINLDRLWTLVSDQTREKY-KDN 126
           AGG HHHRIN DKYHPGYFGKVGMR +H ++   W P++NLD+LWTL+ +  R++Y K  
Sbjct: 35  AGGQHHHRINMDKYHPGYFGKVGMRYFHKQQAHFWKPVLNLDKLWTLIPEDKRDQYLKSA 94
Query: 127 KEGKAPIIDCVKA 139
            +  AP+ID + A
Sbjct: 95  SKETAPVIDTLAA 107

>pdb|3O58|Y Chain Y, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit Of The First 80s In The Asymmetric Unit. Length = 149

Iteration: 1
 Score = 94.0 bits (232), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 41/73 (56%), Positives = 54/73 (73%), Gaps = 1/73 (1%)
Query: 68  AGGMHHHRINFDKYHPGYFGKVGMRNYHIKKNAKWCPIINLDRLWTLVSDQTREKY-KDN 126
           AGG HHHRIN DKYHPGYFGKVGMR +H ++   W P++NLD+LWTL+ +  R++Y K  
Sbjct: 35  AGGEHHHRINMDKYHPGYFGKVGMRYFHKQQAHFWKPVLNLDKLWTLIPEDKRDQYLKSA 94
Query: 127 KEGKAPIIDCVKA 139
            +  AP+ID + A
Sbjct: 95  SKETAPVIDTLAA 107

>pdb|1S1I|V Chain V, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 148

Iteration: 1
 Score = 94.0 bits (232), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 41/73 (56%), Positives = 54/73 (73%), Gaps = 1/73 (1%)
Query: 68  AGGMHHHRINFDKYHPGYFGKVGMRNYHIKKNAKWCPIINLDRLWTLVSDQTREKY-KDN 126
           AGG HHHRIN DKYHPGYFGKVGMR +H ++   W P++NLD+LWTL+ +  R++Y K  
Sbjct: 34  AGGEHHHRINMDKYHPGYFGKVGMRYFHKQQAHFWKPVLNLDKLWTLIPEDKRDQYLKSA 93
Query: 127 KEGKAPIIDCVKA 139
            +  AP+ID + A
Sbjct: 94  SKETAPVIDTLAA 106

>pdb|3JYW|V Chain V, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 142

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 41/73 (56%), Positives = 54/73 (73%), Gaps = 1/73 (1%)
Query: 68  AGGMHHHRINFDKYHPGYFGKVGMRNYHIKKNAKWCPIINLDRLWTLVSDQTREKY-KDN 126
           AGG HHHRIN DKYHPGYFGKVGMR +H ++   W P++NLD+LWTL+ +  R++Y K  
Sbjct: 29  AGGEHHHRINMDKYHPGYFGKVGMRYFHKQQAHFWKPVLNLDKLWTLIPEDKRDQYLKSA 88
Query: 127 KEGKAPIIDCVKA 139
            +  AP+ID + A
Sbjct: 89  SKETAPVIDTLAA 101

>pdb|3ZF7|BB Chain b, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 145

Iteration: 1
 Score = 82.8 bits (203), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 41/71 (57%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 67  NAGGMHHHRINFDKYHPGYFGKVGMRNYHIKKNAKWCPIINLDRLWTLVSDQTREKYKDN 126
           NAGG HHHRINF KYHPGYFGK GM +YH KKN  W P INLD L  L++    E  K  
Sbjct: 34  NAGGEHHHRINFRKYHPGYFGKCGMNHYHKKKNTTWKPTINLDNLTKLMAKD--EAMKAK 91
Query: 127 KEGKAPIIDCV 137
           K    P+ID +
Sbjct: 92  KGEALPVIDLL 102

>pdb|3IZR|O Chain O, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 144

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 34/49 (69%), Positives = 40/49 (81%)
Query: 67  NAGGMHHHRINFDKYHPGYFGKVGMRNYHIKKNAKWCPIINLDRLWTLV 115
           NAGGMHHHRI FDKYHPGYFGKVGMR +H   N   CP +N++RLW++V
Sbjct: 34  NAGGMHHHRILFDKYHPGYFGKVGMRYFHRLSNRFHCPAVNVERLWSMV 82

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	144
3o58_Y	149	60S ribosomal protein L28; ribosomal RNA and prote	9e-39
2zkr_l	148	60S ribosomal protein L27A; protein-RNA complex, 6	2e-38
3iz5_O	144	60S ribosomal protein L27A (L15P); eukaryotic ribo	2e-35
4a17_K	149	L29, RPL27A, 60S ribosomal protein L27A; eukaryoti	7e-33
1vq8_L	165	50S ribosomal protein L15P; ribosome 50S, protein-	1e-23

>3o58_Y 60S ribosomal protein L28; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3o5h_Y 3izc_O 3izs_O 3u5e_a 3u5i_a 1s1i_V 3jyw_V Length = 149

 Score =  127 bits (320), Expect = 9e-39
 Identities = 64/105 (60%), Positives = 79/105 (75%), Gaps = 1/105 (0%)

Query: 36  TNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYH 95
           +   KTRK RGHVS G GR+GKHRKHPGGRG AGG HHHRIN DKYHPGYFGKVGMR +H
Sbjct: 3   SRFTKTRKHRGHVSAGKGRIGKHRKHPGGRGMAGGEHHHRINMDKYHPGYFGKVGMRYFH 62

Query: 96  IKKNAKWCPIINLDRLWTLVSDQTREKY-KDNKEGKAPIIDCVKA 139
            ++   W P++NLD+LWTL+ +  R++Y K   +  AP+ID + A
Sbjct: 63  KQQAHFWKPVLNLDKLWTLIPEDKRDQYLKSASKETAPVIDTLAA 107

>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 148

 Score =  126 bits (317), Expect = 2e-38
 Identities = 77/104 (74%), Positives = 90/104 (86%)

Query: 36  TNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYH 95
           +  +KTRKLRGHVSHGHGR+GKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGM++YH
Sbjct: 3   SRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMKHYH 62

Query: 96  IKKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKA 139
           +K+N  +CP +NLD+ WTLVS+QTR     NK G APIID V++
Sbjct: 63  LKRNQSFCPTVNLDKPWTLVSEQTRVNAAKNKTGVAPIIDVVRS 106

>4a17_K L29, RPL27A, 60S ribosomal protein L27A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_K 4a1c_K 4a1e_K Length = 149

 Score =  112 bits (281), Expect = 7e-33
 Identities = 69/107 (64%), Positives = 87/107 (81%), Gaps = 3/107 (2%)

Query: 36  TNKKKTRKLRGHVSHGHGRVGKHRKH--PGGRGNAGGMHHHRINFDKYHPGYFGKVGMRN 93
           ++ KKTRKLRGHVSHGHGRVGKHRK    GGRG AGGMHHHRI  +K+HPGY+GK+GMR 
Sbjct: 3   SHLKKTRKLRGHVSHGHGRVGKHRKGGCRGGRGKAGGMHHHRILMEKWHPGYYGKLGMRT 62

Query: 94  YHIKKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPIIDCVKAV 140
           +H+KKN   CP++N+D+LW+LVSD TR+KY ++K+   P+ID  KA 
Sbjct: 63  FHLKKNPLHCPVVNIDKLWSLVSDATRQKYAEDKKK-VPVIDVTKAG 108

>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_L* 1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L* 1vql_L* 1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L* 1yij_L* 1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ... Length = 165

 Score = 89.1 bits (221), Expect = 1e-23
 Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 9/97 (9%)

Query: 39  KKTRKLRGHVSHGHGRVGKHRK--HPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHI 96
            K ++ RG  +HG G     R   H GGRG+AG   H       ++    GK G +    
Sbjct: 3   SKKKRQRGSRTHGGGSHKNRRGAGHRGGRGDAGRDKHE-----FHNHEPLGKSGFKRPQK 57

Query: 97  KKNAKWCPIINLDRLWTLVSDQTREKYKDNKEGKAPI 133
            +  +    I++  +   V+    +   + ++G   +
Sbjct: 58  VQ--EEAATIDVREIDENVTLLAADDVAEVEDGGFRV 92

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	144
3o58_Y	149	60S ribosomal protein L28; ribosomal RNA and prote	100.0
3iz5_O	144	60S ribosomal protein L27A (L15P); eukaryotic ribo	100.0
4a17_K	149	L29, RPL27A, 60S ribosomal protein L27A; eukaryoti	100.0
3j21_L	147	50S ribosomal protein L15P; archaea, archaeal, KIN	100.0
2zkr_l	148	60S ribosomal protein L27A; protein-RNA complex, 6	100.0
1vq8_L	165	50S ribosomal protein L15P; ribosome 50S, protein-	99.93
2zjr_I	156	50S ribosomal protein L15; ribosome, large ribosom	98.62
3bbo_N	257	Ribosomal protein L15; large ribosomal subunit, sp	98.17
3r8s_L	143	50S ribosomal protein L15; protein biosynthesis, R	94.3
3v2d_P	150	50S ribosomal protein L15; ribosome associated inh	93.98

>3o58_Y 60S ribosomal protein L28; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3o5h_Y 3izc_O 3izs_O 3u5e_a 3u5i_a 4b6a_a 1s1i_V 3jyw_V

Probab=100.00  E-value=1.5e-51  Score=319.39  Aligned_cols=106  Identities=59%  Similarity=1.122  Sum_probs=101.9

Q ss_pred             ccccccccccccCceeccCCccCCCCCCCCCcCCCCCCCceeeEeeeeCCCCCCCCCcccCccccCCcccceeehhHHHh
Q psy1342          34 ESTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKKNAKWCPIINLDRLWT  113 (144)
Q Consensus        34 M~~r~kKtRKlRGsrt~G~G~igkhRkhrGGRG~AGg~kHh~~~~~KY~P~yfGK~Gfr~pH~~kn~~~~p~INV~kLwe  113 (144)
                      ||||++|+||+|||||||||++||||+||||||+||++|||||||+||||+||||+||++||+++|+++||+||||+||+
T Consensus         1 M~~r~kKtrK~RG~~s~G~G~~gkhR~h~GGrG~AGg~~Hh~~~~~Ky~p~~fGK~G~r~~h~~~n~~~~~~INldkL~~   80 (149)
T 3o58_Y            1 MPSRFTKTRKHRGHVSAGKGRIGKHRKHPGGRGMAGGEHHHRINMDKYHPGYFGKVGMRYFHKQQAHFWKPVLNLDKLWT   80 (149)
T ss_dssp             CCCSSGGGSSSSSCSSSBTTBSCCSSCSSSSSSSCCCSSSSCCCSCCCTTSSSSCCSCCCCCCCCCCCCCCSTTTTHHHH
T ss_pred             CCccccccccccCCCccCCCCCCCCCCCCCCCccccCccceeEEEeeeCCCccCCCCcccCcccccccccceEEHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHhccccc-CCCCccEEecccc
Q psy1342         114 LVSDQTREKYKDN-KEGKAPIIDCVKA  139 (144)
Q Consensus       114 LV~el~~~g~a~~-ke~~apVIDl~~~  139 (144)
                      ||++++++++|++ +++++|||||+++
T Consensus        81 lv~~~~~~~~a~~~~~~~~~vID~~~~  107 (149)
T 3o58_Y           81 LIPEDKRDQYLKSASKETAPVIDTLAA  107 (149)
T ss_dssp             CSSCCSCSSCTTSSTTSSCCBCCCSSS
T ss_pred             HhHHHHhhhhhhhccCCCCcEEEEecc
Confidence            9999999999852 4799999999875

>4a17_K L29, RPL27A, 60S ribosomal protein L27A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_K 4a1c_K 4a1e_K

Probab=100.00  E-value=3.5e-46  Score=288.56  Aligned_cols=104  Identities=65%  Similarity=1.219  Sum_probs=99.8

Q ss_pred             ccccccccccccCceeccCCccCCCCC--CCCCcCCCCCCCceeeEeeeeCCCCCCCCCcccCccccCCcccceeehhHH
Q psy1342          34 ESTNKKKTRKLRGHVSHGHGRVGKHRK--HPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKKNAKWCPIINLDRL  111 (144)
Q Consensus        34 M~~r~kKtRKlRGsrt~G~G~igkhRk--hrGGRG~AGg~kHh~~~~~KY~P~yfGK~Gfr~pH~~kn~~~~p~INV~kL  111 (144)
                      ||||++|+||+|||||||||++||||+  ||||||+||++||||+||+||||+||||+||++||+.+|+.+|++||||+|
T Consensus         1 m~~r~~K~rk~RG~~s~G~G~~gkhR~~Gh~GGrG~AGg~~Hhr~~~~ky~p~~fGK~Gfr~~h~~~n~~~~~~VNLdkL   80 (149)
T 4a17_K            1 MVSHLKKTRKLRGHVSHGHGRVGKHRKGGCRGGRGKAGGMHHHRILMEKWHPGYYGKLGMRTFHLKKNPLHCPVVNIDKL   80 (149)
T ss_dssp             -CGGGSHHHHHTTSSSTTSCSSSCSCCHHHHTSSTTTTTTTTTHHHHHHHSTTCSSCCSCCCSSCCCGGGCCCEEEGGGH
T ss_pred             CCccccccccccCCCccCCCCCCCcCCCCCCCCCcccCCCcceEEeeeccCCCcCCCCCccCCCccCCcceeeEEEHHHH
Confidence            899999999999999999999999999  999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhHHHHhcccccCCCCccEEeccc
Q psy1342         112 WTLVSDQTREKYKDNKEGKAPIIDCVK  138 (144)
Q Consensus       112 weLV~el~~~g~a~~ke~~apVIDl~~  138 (144)
                      |+|++++++.++++ +++++|||||++
T Consensus        81 ~~l~~~~~~~~~~~-~~~~~~vId~~~  106 (149)
T 4a17_K           81 WSLVSDATRQKYAE-DKKKVPVIDVTK  106 (149)
T ss_dssp             HHHSCHHHHHHHHH-CCSSCCEEEHHH
T ss_pred             HHHhhhhcchhhhh-hcCCceEEEecc
Confidence            99999999999988 788999999754

>3j21_L 50S ribosomal protein L15P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=5.8e-42  Score=264.30  Aligned_cols=103  Identities=30%  Similarity=0.381  Sum_probs=95.3

Q ss_pred             ccccccccccccCceeccCCccCCCCC--CCCCcCCCCC---CCceeeEeeeeCCCCCCCCCcccCccccCCcccceeeh
Q psy1342          34 ESTNKKKTRKLRGHVSHGHGRVGKHRK--HPGGRGNAGG---MHHHRINFDKYHPGYFGKVGMRNYHIKKNAKWCPIINL  108 (144)
Q Consensus        34 M~~r~kKtRKlRGsrt~G~G~igkhRk--hrGGRG~AGg---~kHh~~~~~KY~P~yfGK~Gfr~pH~~kn~~~~p~INV  108 (144)
                      ||||++|+||+|||||||||++||||+  ||||||+||+   +|||||||+||||+||||+||++||..+  ..+++|||
T Consensus         1 m~~r~~k~rk~rG~~s~g~G~~~khR~~G~~GGrG~aG~g~~~~H~~~~~~ky~p~~~pK~GF~n~~~~~--~~~~~VNL   78 (147)
T 3j21_L            1 MIRRRKKVRKLRGSHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGKRGFSRPPEVQ--REVRVVNL   78 (147)
T ss_dssp             CCCHHHHHTTTTCCSSTTSCSTTTSCSHHHHTSSTTTTSSCSSSSSSSCSSSSCSCCSCCCSCCCCTTTC--CCCCEEEH
T ss_pred             CCccccccccccCCCccCCCCCCCcCCCCCCCCCcccCCCccCcccEEEEeecCCCcCCcCCCCcccccc--ceeEEEEH
Confidence            899999999999999999999999999  9999999999   9999999999999999999999875433  24679999


Q ss_pred             hHHHhhhhHHHHhcccccCCCCccEEecccc
Q psy1342         109 DRLWTLVSDQTREKYKDNKEGKAPIIDCVKA  139 (144)
Q Consensus       109 ~kLweLV~el~~~g~a~~ke~~apVIDl~~~  139 (144)
                      ++||+++++|++.++++ +++++|||||+++
T Consensus        79 ~~L~~l~~~L~~~gli~-~~~~~~vid~~~~  108 (147)
T 3j21_L           79 KFIDEHLDELMQMGIAY-EEGGKIIVDVTQF  108 (147)
T ss_dssp             HHHHHTTTTTTTSCCCS-SSSBSEEEEGGGG
T ss_pred             HHHHHHHHHHHHcCccc-ccCCcceeccccc
Confidence            99999999999999998 6789999998765

>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=2.4e-37  Score=237.43  Aligned_cols=104  Identities=74%  Similarity=1.325  Sum_probs=69.0

Q ss_pred             ccccccccccccCceeccCCccCCCCCCCCCcCCCCCCCceeeEeeeeCCCCCCCCCcccCccccCCcccceeehhHHHh
Q psy1342          34 ESTNKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKKNAKWCPIINLDRLWT  113 (144)
Q Consensus        34 M~~r~kKtRKlRGsrt~G~G~igkhRkhrGGRG~AGg~kHh~~~~~KY~P~yfGK~Gfr~pH~~kn~~~~p~INV~kLwe  113 (144)
                      |++|++|+||+|||+|||||++||||+|+||||+|||++|||+||+||||+||+|+||++||..++.+||++|||++||+
T Consensus         1 m~~r~~k~rk~RG~~t~G~G~~gq~r~~~Gg~G~aGgq~h~~~~~~k~~p~~lpK~GF~~~~~~~~~~~~~~VNl~~L~~   80 (148)
T 2zkr_l            1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKPWT   80 (148)
T ss_dssp             -----CHHHHTTTTSCSSCCSCSCC--CCSCSSSTTTTTTTCSSCTTTC------------------CCCCEEETHHHHH
T ss_pred             CCCccCCcccCCCCcCcCCCCCCCCCCCCCCCCcccCCCCCEEeccccCCCcCCCCCcCCCCccccceecceEEHHHHHh
Confidence            88999999999999999999999999999999999999999999999999999999999987766778889999999999


Q ss_pred             hhhHHHHhcccccCCCCccEEecc
Q psy1342         114 LVSDQTREKYKDNKEGKAPIIDCV  137 (144)
Q Consensus       114 LV~el~~~g~a~~ke~~apVIDl~  137 (144)
                      +++++...+++++.+.++++||+.
T Consensus        81 l~~~~~~~~~~~~l~~~~~vI~~~  104 (148)
T 2zkr_l           81 LVSEQTRVNAAKNKTGVAPIIDVV  104 (148)
T ss_dssp             HTTTTTSSCTTTTEEEHHHHSTTC
T ss_pred             hhhcCcEEehhhhccccCCeEecc
Confidence            988876666542113567777754

>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_L* 1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L* 1vql_L* 1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L* 1yij_L* 1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ...

Probab=99.93  E-value=4.5e-27  Score=183.86  Aligned_cols=97  Identities=25%  Similarity=0.377  Sum_probs=83.8

Q ss_pred             ccccccccCceeccCCccCCCCC--CCCCcCCCCCCCceeeEeeeeCCCCCCCCCcccCccccCCcccceeehhHHHhhh
Q psy1342          38 KKKTRKLRGHVSHGHGRVGKHRK--HPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKKNAKWCPIINLDRLWTLV  115 (144)
Q Consensus        38 ~kKtRKlRGsrt~G~G~igkhRk--hrGGRG~AGg~kHh~~~~~KY~P~yfGK~Gfr~pH~~kn~~~~p~INV~kLweLV  115 (144)
                      ++|++|+||+|+||+|++||||+  |+||+|+||+++|+|++|++     |+|+||++||..++.  +++|||++||+++
T Consensus         2 ~~k~~k~R~gRg~GsG~~GKt~grGhkGqk~raGg~~~~~~pl~k-----lPK~GF~~~~~~r~~--~~~VNL~~L~~l~   74 (165)
T 1vq8_L            2 TSKKKRQRGSRTHGGGSHKNRRGAGHRGGRGDAGRDKHEFHNHEP-----LGKSGFKRPQKVQEE--AATIDVREIDENV   74 (165)
T ss_dssp             CCHHHHCTTCSSTTCSSTTSSCSGGGGTSSTTTTTTTTTCTTSCC-----SCCCCCCCCGGGCCC--EEEEEHHHHHHTT
T ss_pred             CccccCcCCccCCCCCCCCCCCCCCCCCcccccCCCcCCCceeeE-----CCCCCCccCCcccce--eeeEEHHHHHHHH
Confidence            57889999999999999999999  99999999999999999888     999999998764443  6799999999999


Q ss_pred             hHHHHhcccccCCCCccEEeccccccc
Q psy1342         116 SDQTREKYKDNKEGKAPIIDCVKAVSI  142 (144)
Q Consensus       116 ~el~~~g~a~~ke~~apVIDl~~~~~~  142 (144)
                      +++++.++++ .++++++||++.+++.
T Consensus        75 ~~~~~~g~~~-~~~~~~vId~~~L~~~  100 (165)
T 1vq8_L           75 TLLAADDVAE-VEDGGFRVDVRDVVEE  100 (165)
T ss_dssp             GGGTTSCCCC------CEEEGGGTCTT
T ss_pred             HHhhhccccc-cCCCCeEECHHHHHHC
Confidence            9999999987 6777789999988664

>2zjr_I 50S ribosomal protein L15; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.12.1.1 PDB: 1nwx_J* 1nwy_J* 1sm1_J* 1xbp_J* 2zjp_I* 2zjq_I 1nkw_J 3cf5_I* 3dll_I* 3pio_I* 3pip_I* 1pnu_J 1pny_J 1vor_M 1vou_M 1vow_M 1voy_M 1vp0_M

Probab=98.62  E-value=4.4e-08  Score=75.76  Aligned_cols=59  Identities=15%  Similarity=0.158  Sum_probs=40.8

Q ss_pred             CCCCcCCCCCCCceeeEeeeeCCCC--CCCCCcccCccccCCcccceeehhHHHhhhhH------HHHhcccc
Q psy1342          61 HPGGRGNAGGMHHHRINFDKYHPGY--FGKVGMRNYHIKKNAKWCPIINLDRLWTLVSD------QTREKYKD  125 (144)
Q Consensus        61 hrGGRG~AGg~kHh~~~~~KY~P~y--fGK~Gfr~pH~~kn~~~~p~INV~kLweLV~e------l~~~g~a~  125 (144)
                      |+|...++|+..+...- --++|.|  |+|+||++     +..++++|||++||++++.      |.+.+++.
T Consensus        34 ~KGqk~RsG~~~~~gfE-GGQ~Pl~rrlPK~GF~n-----~~~~~~~VNL~~L~~l~~~~i~~~~L~~~gli~  100 (156)
T 2zjr_I           34 HKGQKSRSGAGKGAFFE-GGRSRLIARLPKRGFNN-----VGTTYEVVKLSQLQDLEDTTFDRDTLEAYRLVR  100 (156)
T ss_dssp             CCCSSSSSCCSCCCSCS-CCSSSSTTTSCCCCCCC-----CCCCCCEECHHHHTTSCCCCCCTTTTHHHHHCC
T ss_pred             CCCCCCCCCCCCCCceE-cCcCCCeEecCCCCCcC-----CceEEEeechhHHHhhhcCCcCHHHHHhCCcEe
Confidence            66666666655443222 2379999  99999996     3456789999999998753      55555554

>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=98.17  E-value=7e-07  Score=74.22  Aligned_cols=69  Identities=28%  Similarity=0.305  Sum_probs=45.7

Q ss_pred             cccccccccC--c---eeccCCccCCCCCC--CCCcCCCCCCCceeeEeeeeCCCC--CCC-CCcccCccccCCccccee
Q psy1342          37 NKKKTRKLRG--H---VSHGHGRVGKHRKH--PGGRGNAGGMHHHRINFDKYHPGY--FGK-VGMRNYHIKKNAKWCPII  106 (144)
Q Consensus        37 r~kKtRKlRG--s---rt~G~G~igkhRkh--rGGRG~AGg~kHh~~~~~KY~P~y--fGK-~Gfr~pH~~kn~~~~p~I  106 (144)
                      +++|+|.-||  |   .|+|+|+.||+..+  ...+|-.||+          .|.|  |+| +||++++.. +...+++|
T Consensus        77 ~k~kkRvGRG~GSG~GKT~GRGhKGQkaRsG~~~r~GFEGGQ----------mPl~rRlPK~rGF~n~~~~-~r~~y~~V  145 (257)
T 3bbo_N           77 RKRPKRKGRGIAAGQGASCGFGMRGQKSRSGPGIMRGFEGGQ----------MPLYRRLPKLRGIAGGMHA-GLPKYVNV  145 (257)
T ss_dssp             CSCCCCCSSCCCCSCSSSCSSSCCCCGGGTSSCSSTTCCSSC----------SSTTSCCCCCSSCCCCCSS-CCSSSSCS
T ss_pred             ccCCcCCcCcCCCCCCCcCCCCCCCCcCcCCCCCCCceecCC----------CcchhhcccccccCCcccc-CcceeeeE
Confidence            3455566677  3   67888877765542  2224666776          6776  999 899975321 12345799


Q ss_pred             ehhHHHhh-hh
Q psy1342         107 NLDRLWTL-VS  116 (144)
Q Consensus       107 NV~kLweL-V~  116 (144)
                      ||++||++ ++
T Consensus       146 NL~kL~~lr~~  156 (257)
T 3bbo_N          146 NLTDIENAGFQ  156 (257)
T ss_dssp             CSSCCSCSSTT
T ss_pred             eHHHHhhcccC
Confidence            99999986 54

>3r8s_L 50S ribosomal protein L15; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_L 3j19_L 2wwq_L 3oat_L* 3oas_L* 3ofd_L 3ofc_L 3ofr_L* 3ofz_L* 3og0_L 3ofq_L 3r8t_L 3i1n_L 1p85_J 1p86_J 1vs8_L 1vs6_L 2aw4_L 2awb_L 1vt2_L ...

Probab=94.30  E-value=0.022  Score=43.34  Aligned_cols=25  Identities=20%  Similarity=0.219  Sum_probs=18.3

Q ss_pred             CCCCCcccCccccCCcccceeehhHHHhh
Q psy1342          86 FGKVGMRNYHIKKNAKWCPIINLDRLWTL  114 (144)
Q Consensus        86 fGK~Gfr~pH~~kn~~~~p~INV~kLweL  114 (144)
                      +.|.||+.++.    ....+|||++|+.+
T Consensus        60 lPK~GF~~~~~----~~y~~VNL~~L~~~   84 (143)
T 3r8s_L           60 LPKFGFTSRKA----AITAEIRLSDLAKV   84 (143)
T ss_dssp             SCCCCCCCSTG----GGEEECCSSSSSCS
T ss_pred             ccccccCCccc----ceeEEEEHHHhhhc
Confidence            67889997642    23359999999765

>3v2d_P 50S ribosomal protein L15; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_J 2hgj_O 2hgq_O 2hgu_O 1vsa_J 2j03_P 2jl6_P 2jl8_P 2v47_P 2v49_P 2wdi_P 2wdj_P 2wdl_P 2wdn_P 2wh2_P 2wh4_P 2wrj_P 2wrl_P 2wro_P 2wrr_P ...

Probab=93.98  E-value=0.052  Score=41.65  Aligned_cols=28  Identities=21%  Similarity=0.137  Sum_probs=17.8

Q ss_pred             CCCCCcccCcc-ccCCcccceeehhHHHh
Q psy1342          86 FGKVGMRNYHI-KKNAKWCPIINLDRLWT  113 (144)
Q Consensus        86 fGK~Gfr~pH~-~kn~~~~p~INV~kLwe  113 (144)
                      +.|.||+...+ ..+.....+|||++|+.
T Consensus        62 lPK~GF~~~~~~~~~~~~y~~VNL~~L~~   90 (150)
T 3v2d_P           62 LPKRGMQGQVPGEIKRPRYQGVNLKDLAR   90 (150)
T ss_dssp             SCCCSCCCCTTCCCCCCCEEEEEHHHHTT
T ss_pred             cCccCccCccccccccceEEEEEHHHHhh
Confidence            67899997200 01223345999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	144
d1vqol1	150	c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {A	8e-11
d2j01p1	146	c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {T	3e-07
d2gycj1	140	c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {E	0.003

>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 150

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 54.3 bits (130), Expect = 8e-11
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 8/91 (8%)

Query: 40  KTRKLRGHVSHGHGRVGKHRK--HPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRN-YHI 96
           K ++ RG  +HG G     R   H GGRG+AG   H    F  + P   GK G +    +
Sbjct: 3   KKKRQRGSRTHGGGSHKNRRGAGHRGGRGDAGRDKHE---FHNHEP--LGKSGFKRPQKV 57

Query: 97  KKNAKWCPIINLDRLWTLVSDQTREKYKDNK 127
           ++ A    +  +D   TL++     + +D  
Sbjct: 58  QEEAATIDVREIDENVTLLAADDVAEVEDGG 88

>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus thermophilus [TaxId: 274]} Length = 146

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Thermus thermophilus [TaxId: 274]

 Score = 45.0 bits (106), Expect = 3e-07
 Identities = 18/78 (23%), Positives = 24/78 (30%), Gaps = 2/78 (2%)

Query: 37  NKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHI 96
           NK++ R  RG  S GHG+    R H G +  +GG+   R                     
Sbjct: 9   NKRRKRVGRGPGS-GHGKTAT-RGHKGQKSRSGGLKDPRRFEGGRSTTLMRLPKRGMQGQ 66

Query: 97  KKNAKWCPIINLDRLWTL 114
                  P      L  L
Sbjct: 67  VPGEIKRPRYQGVNLKDL 84

>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {Escherichia coli [TaxId: 562]} Length = 140

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Escherichia coli [TaxId: 562]

 Score = 33.5 bits (76), Expect = 0.003
 Identities = 18/78 (23%), Positives = 24/78 (30%), Gaps = 8/78 (10%)

Query: 37  NKKKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHI 96
            K   R  RG  S G G+        GGRG+ G          +   G    +  R    
Sbjct: 10  KKAGKRLGRGIGS-GLGK-------TGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKF 61

Query: 97  KKNAKWCPIINLDRLWTL 114
              ++   I    RL  L
Sbjct: 62  GFTSRKAAITAEIRLSDL 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	144
d1vqol1	150	Ribosomal protein L15 (L15p) {Archaeon Haloarcula	99.51
d2j01p1	146	Ribosomal protein L15 (L15p) {Thermus thermophilus	97.55
d2zjri1	141	Ribosomal protein L15 (L15p) {Deinococcus radiodur	97.08
d2gycj1	140	Ribosomal protein L15 (L15p) {Escherichia coli [Ta	95.17
d2gycj1	140	Ribosomal protein L15 (L15p) {Escherichia coli [Ta	84.04

>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.51  E-value=3.8e-15  Score=110.44  Aligned_cols=93  Identities=27%  Similarity=0.429  Sum_probs=72.5

Q ss_pred             ccccccCceeccCCccCCCCC--CCCCcCCCCCCCceeeEeeeeCCCCCCCCCcccCccccCCcccceeehhHHHhhhhH
Q psy1342          40 KTRKLRGHVSHGHGRVGKHRK--HPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKKNAKWCPIINLDRLWTLVSD  117 (144)
Q Consensus        40 KtRKlRGsrt~G~G~igkhRk--hrGGRG~AGg~kHh~~~~~KY~P~yfGK~Gfr~pH~~kn~~~~p~INV~kLweLV~e  117 (144)
                      |++|+||+|+||+|+.|+|++  |+|++++||..+|+   |..|.|  |+|.||++++..  .....+|||.+|+++++.
T Consensus         3 kk~k~R~gRg~G~G~~~~~~GrG~KGqk~rsG~~~~~---f~g~~~--lpK~g~~~~~~~--~~~~~~inl~~L~~~~~~   75 (150)
T d1vqol1           3 KKKRQRGSRTHGGGSHKNRRGAGHRGGRGDAGRDKHE---FHNHEP--LGKSGFKRPQKV--QEEAATIDVREIDENVTL   75 (150)
T ss_dssp             TGGGCTTCSSTTCSSTTSSSSGGGGTSSTTTTTTTTT---CTTSCC--SSCCCCCCCGGG--CCCEEEEEHHHHHHTTTT
T ss_pred             ccccccCCcCcCCCCCCCCCCCCCCCCCCcccCccCC---CcCCcc--CCccCccccccc--cceeeeccHHHHHHHHhh
Confidence            567899999999999999888  99999999998774   556887  999999986432  233459999999999998


Q ss_pred             HHHhcccccCCCCccEEeccccc
Q psy1342         118 QTREKYKDNKEGKAPIIDCVKAV  140 (144)
Q Consensus       118 l~~~g~a~~ke~~apVIDl~~~~  140 (144)
                      +...+.++ .++...++||.+..
T Consensus        76 ~~~~~~~~-~~~~~~~~~l~~~~   97 (150)
T d1vqol1          76 LAADDVAE-VEDGGFRVDVRDVV   97 (150)
T ss_dssp             CTTSCCCC------CEEEGGGTC
T ss_pred             hccccccc-cccchhhHHHHhhc
Confidence            88888777 67788888877553

>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Thermus thermophilus [TaxId: 274]

Probab=97.55  E-value=2.5e-05  Score=56.98  Aligned_cols=72  Identities=22%  Similarity=0.261  Sum_probs=37.3

Q ss_pred             cccccccccCc-----eeccCCccCCCCCCCCCcCCCCCCCceeeEeeeeCCCC--CCCCCcccCcccc-CCcccceeeh
Q psy1342          37 NKKKTRKLRGH-----VSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGY--FGKVGMRNYHIKK-NAKWCPIINL  108 (144)
Q Consensus        37 r~kKtRKlRGs-----rt~G~G~igkhRkhrGGRG~AGg~kHh~~~~~KY~P~y--fGK~Gfr~pH~~k-n~~~~p~INV  108 (144)
                      ++++.|.-||.     .|||+|+       +|...++|+.+..+-.---..|-|  +.|+||+.++... +...+.+|||
T Consensus         9 ~k~~kR~GRG~gsg~Gkt~GrG~-------kGqkaRsG~~~~~~gFEGGQ~Pl~rrlPK~Gf~~~~~~~~~~~~~~~inl   81 (146)
T d2j01p1           9 NKRRKRVGRGPGSGHGKTATRGH-------KGQKSRSGGLKDPRRFEGGRSTTLMRLPKRGMQGQVPGEIKRPRYQGVNL   81 (146)
T ss_dssp             SSCCCCCCCCSCSSSSSCTTCSS-------CCSSSCSSCCCCSSSCCSSSCTTCCSCCCCCSCCCSSCSCCCCCEEEEET
T ss_pred             CcCcccccCCCCCCCCccCCCCC-------CCCCcCCCCCcCCchhccCCCCceeccchhhhhcccccceeeEEeehhhh
Confidence            45566667775     3455554       444444443332211101113443  7789999753322 2334558999


Q ss_pred             hHHHhhh
Q psy1342         109 DRLWTLV  115 (144)
Q Consensus       109 ~kLweLV  115 (144)
                      ++|..+.
T Consensus        82 ~~l~~~~   88 (146)
T d2j01p1          82 KDLARFE   88 (146)
T ss_dssp             TTTTTSC
T ss_pred             hhhhhcc
Confidence            9986553

>d2zjri1 c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p) {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.08  E-value=0.00037  Score=50.38  Aligned_cols=65  Identities=23%  Similarity=0.320  Sum_probs=36.6

Q ss_pred             cccccccCc----eeccCCccCCCCC--CCCCcCCCCCCCceeeEeeeeCCCCCCCCCcccCccccCCcccceeehhHHH
Q psy1342          39 KKTRKLRGH----VSHGHGRVGKHRK--HPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNYHIKKNAKWCPIINLDRLW  112 (144)
Q Consensus        39 kKtRKlRGs----rt~G~G~igkhRk--hrGGRG~AGg~kHh~~~~~KY~P~yfGK~Gfr~pH~~kn~~~~p~INV~kLw  112 (144)
                      ++.|.=||.    .|+|+|+.||...  .....|--||+.--.-        -++|.||++|.    .. ..+|||++|.
T Consensus        12 ~~kR~gRG~gg~Gkt~GrG~KGqk~RsG~~~~~gfeGGQ~Pl~r--------rlPKrGf~~~~----~~-~~~inl~~l~   78 (141)
T d2zjri1          12 DRKRVGRGPGGTDKTAGRGHKGQKSRSGAGKGAFFEGGRSRLIA--------RLPKRGFNNVG----TT-YEVVKLSQLQ   78 (141)
T ss_dssp             CCCCSSSCCCCCCSCSSSCCCCSSSSSCCSCCCSCSCCSSSSTT--------TSCCCCCCCCC----CC-CCEECHHHHT
T ss_pred             CcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccccccee--------cCCccCCCccc----ce-EEEEEhhhhh
Confidence            333455664    5666776665432  2222345555543111        25788998752    12 3489999998


Q ss_pred             hhhh
Q psy1342         113 TLVS  116 (144)
Q Consensus       113 eLV~  116 (144)
                      ++.+
T Consensus        79 ~~~~   82 (141)
T d2zjri1          79 DLED   82 (141)
T ss_dssp             TSCC
T ss_pred             cccc
Confidence            7743

>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Escherichia coli [TaxId: 562]

Probab=95.17  E-value=0.0047  Score=43.99  Aligned_cols=25  Identities=24%  Similarity=0.215  Sum_probs=14.8

Q ss_pred             CCCCCcccCccccCCcccceeehhHHHhh
Q psy1342          86 FGKVGMRNYHIKKNAKWCPIINLDRLWTL  114 (144)
Q Consensus        86 fGK~Gfr~pH~~kn~~~~p~INV~kLweL  114 (144)
                      +.|.||..++.   ..++ .|||.+|+.+
T Consensus        58 ~PK~Gf~~~~~---~~~~-~i~l~~l~~~   82 (140)
T d2gycj1          58 LPKFGFTSRKA---AITA-EIRLSDLAKV   82 (140)
T ss_dssp             SSSCCCCCCCC---CCCC-CBCCSSSSSS
T ss_pred             Cceeecccccc---ceee-eEEeeeehhc
Confidence            45778886432   2233 5777777654

>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Escherichia coli [TaxId: 562]

Probab=84.04  E-value=0.25  Score=34.50  Aligned_cols=43  Identities=28%  Similarity=0.327  Sum_probs=22.2

Q ss_pred             ccccccccCc-----eeccCCccCCCCCC--CCCcCCCCCCCceeeEeee
Q psy1342          38 KKKTRKLRGH-----VSHGHGRVGKHRKH--PGGRGNAGGMHHHRINFDK   80 (144)
Q Consensus        38 ~kKtRKlRGs-----rt~G~G~igkhRkh--rGGRG~AGg~kHh~~~~~K   80 (144)
                      +++.|.-||+     .|||.|..|+...+  ..-+|--||+..-...+=|
T Consensus        11 k~~kR~gRG~gsg~Gkt~GrG~kGqk~R~g~~~r~gfEGGQ~Pl~rr~PK   60 (140)
T d2gycj1          11 KAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPK   60 (140)
T ss_dssp             SCSCCSSSCCCSSSCCSSCSSCCCCSCCSSCSSSCSCCSSCSSSSSSSSS
T ss_pred             cCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCcccceeeCce
Confidence            4445667774     55666665543321  1124556666665555444