Psyllid ID: psy1344

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
Protein Sequence
MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPPN
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHccccccEEEEEEEccccccccEEEccccHHHHHHHHHHHHHHHcccccccccccccccccccEEccccccEEEEEEccccccEEEEEEEEcccccccccccEEEEcccccccccccccccEEEEEEcccccccEEccccccccccccEEEEEEccccEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHEEccccEEEEEEEEEcccccccHHHHccccHHHHHHHHHHHHHHHccccccccccccccccEEEEEccccEEEEEEEccccccEEEEEEEEcccccccccccEEEEEccHccccccccccEEEEEEEccccEEEEEEcccccccccccEEEEEcccccEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mdyqnrpggktggggvaswseSNRDRRERLRQLALETIdlnkdpyfmknhlgsyecKLCLTlhnnegsylahtQGKKHQANLARRAAKeakdapqqpapekprvepkkfvkigrpgyrvtkqrdpsngqqsllfqvdypeiaddvfprhrfmsayeqrieppdrkWQYLLFAaepyetiafkvpsrevdkgdtkfwtHWNKDTKQFFLQFSfrneskpsfrpppspspairnnlppppmlppppppqmmgppppppglfgnmppppphmggmaptlampppppppn
Flexible Loop (DISEMBL)
mdyqnrpggktggggvaswsesnrDRRERLRQLALetidlnkdpYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQANLARRAAKEakdapqqpapekprvepkkfvkigrpgyrvtkqrdpsngqqSLLFQVDYPEIADDVFPRHRFMSAyeqrieppdrKWQYLLFAAEPYetiafkvpsrevDKGDTKFWTHWNKDTKQFFLQFSFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPPN
Low Complexity Region (SEG)
MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNEskpsfrpppspspAIRNNlppppmlppppppqmmgppppppglfgnmppppphmggmapTLAMpppppppN
Disordered region (IsUnstruct)
********************************LALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGSYLA************************************************************LLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVPSREVDKGDTKFWTHWNKDTKQFFLQFSF**************************************************************************
Disordered Region (DISOPRED)
*********************************ALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGSYL*****************************************IGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQ**EPPDRKWQYLLFAAEPYETIAFKVPSREVDKGDTKFWTHWNKDTKQFFLQFSF**************************************************************************
Disordered Region (DISEMBL)
**************************RERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGSYL**********************************EPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRN***********PSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAM********
Disordered Region (DISPRO)
***********************RDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQANLARRAAKEAKD***********VEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNESK*************RNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPP****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPPN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	286	2.2.26 [Sep-21-2011]
Q15428	464	Splicing factor 3A subuni	yes	N/A	0.765	0.471	0.844	5e-99
Q6AXT8	471	Splicing factor 3A subuni	yes	N/A	0.765	0.464	0.849	5e-99
A5PJN8	477	Splicing factor 3A subuni	yes	N/A	0.765	0.459	0.844	1e-98
Q62203	475	Splicing factor 3A subuni	yes	N/A	0.730	0.44	0.803	5e-91
Q54B65	215	Splicing factor 3A subuni	yes	N/A	0.713	0.948	0.587	5e-71
Q9P7L8	217	Pre-mRNA-splicing factor	yes	N/A	0.734	0.967	0.579	6e-68
Q07350	266	Pre-mRNA-splicing factor	yes	N/A	0.685	0.736	0.282	1e-11

>sp|Q15428|SF3A2_HUMAN Splicing factor 3A subunit 2 OS=Homo sapiens GN=SF3A2 PE=1 SV=2

 Score =  360 bits (925), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 185/219 (84%), Positives = 201/219 (91%)

Query: 1   MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
           MD+Q+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct: 1   MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60

Query: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
           TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP QPAPEK +VE KKFVKIGRPGY+VT
Sbjct: 61  TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVT 120

Query: 121 KQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIA 180
           KQRD   GQQSLLFQ+DYPEIA+ + PRHRFMSAYEQRIEPPDR+WQYLL AAEPYETIA
Sbjct: 121 KQRDSEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIA 180

Query: 181 FKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNESKPS 219
           FKVPSRE+DK + KFWTHWN++TKQFFLQF F+ E  P+
Sbjct: 181 FKVPSREIDKAEGKFWTHWNRETKQFFLQFHFKMEKPPA 219

Subunit of the splicing factor SF3A required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex.
Homo sapiens (taxid: 9606)

>sp|Q6AXT8|SF3A2_RAT Splicing factor 3A subunit 2 OS=Rattus norvegicus GN=Sf3a2 PE=2 SV=1

 Score =  360 bits (925), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 186/219 (84%), Positives = 201/219 (91%)

Query: 1   MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
           MD+Q+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct: 1   MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60

Query: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
           TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP QPAPEK +VE KKFVKIGRPGY+VT
Sbjct: 61  TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVT 120

Query: 121 KQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIA 180
           KQRD   GQQSLLFQ+DYPEIA+ V PRHRFMSAYEQRIEPPDR+WQYLL AAEPYETIA
Sbjct: 121 KQRDTEMGQQSLLFQIDYPEIAEGVMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIA 180

Query: 181 FKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNESKPS 219
           FKVPSRE+DK + KFWTHWN++TKQFFLQF F+ E  P+
Sbjct: 181 FKVPSREIDKAEGKFWTHWNRETKQFFLQFHFKMEKPPA 219

Subunit of the splicing factor SF3A required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex.

Rattus norvegicus (taxid: 10116)

>sp|A5PJN8|SF3A2_BOVIN Splicing factor 3A subunit 2 OS=Bos taurus GN=SF3A2 PE=2 SV=1

 Score =  359 bits (922), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 185/219 (84%), Positives = 201/219 (91%)

Query: 1   MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
           MD+Q+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct: 1   MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60

Query: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
           TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP QPAPEK +VE KKFVKIGRPGY+VT
Sbjct: 61  TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVT 120

Query: 121 KQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIA 180
           KQRD   GQQSLLFQ+DYPEIA+ + PRHRFMSAYEQRIEPPDR+WQYLL AAEPYETIA
Sbjct: 121 KQRDTEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIA 180

Query: 181 FKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNESKPS 219
           FKVPSRE+DK + KFWTHWN++TKQFFLQF F+ E  P+
Sbjct: 181 FKVPSREIDKAEGKFWTHWNRETKQFFLQFHFKMEKPPA 219

Subunit of the splicing factor SF3A required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex.

Bos taurus (taxid: 9913)

>sp|Q62203|SF3A2_MOUSE Splicing factor 3A subunit 2 OS=Mus musculus GN=Sf3a2 PE=2 SV=2

 Score =  334 bits (856), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 176/219 (80%), Positives = 191/219 (87%), Gaps = 10/219 (4%)

Query: 1   MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
           MD+Q+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct: 1   MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60

Query: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
           TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP QPAPE+ +VE KKFVKIGRPGY+VT
Sbjct: 61  TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEQVKVEVKKFVKIGRPGYKVT 120

Query: 121 KQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIA 180
           KQRD   GQQSLLFQ+DYPEIA+ + PRHRFMSAYEQRIEPPDR+WQYLL AAEPYETIA
Sbjct: 121 KQRDTEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIA 180

Query: 181 FKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNESKPS 219
           FKVPSRE+DK + KF          FFLQF F+ E  P+
Sbjct: 181 FKVPSREIDKAEGKF----------FFLQFHFKMEKPPA 209

Subunit of the splicing factor SF3A required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex.

Mus musculus (taxid: 10090)

>sp|Q54B65|SF3A2_DICDI Splicing factor 3A subunit 2 OS=Dictyostelium discoideum GN=sf3a2 PE=3 SV=1

 Score =  267 bits (683), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 124/211 (58%), Positives = 160/211 (75%), Gaps = 7/211 (3%)

Query: 9   GKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGS 68
           GK G GG+ S    N DRRER +QL LE +D++KDPY + NH+GS+EC+LCLT+HNN G+
Sbjct: 5   GKAGSGGLQSSQYDNIDRRERQKQLVLEHVDVSKDPYIISNHIGSFECRLCLTVHNNVGN 64

Query: 69  YLAHTQGKKHQANLARRAAKEAKDAP---QQPAPEKPRVEPKKFVKIGRPGYRVTKQRDP 125
           YLAHTQGKKHQ +LARRAAKE ++ P   +    +  RV  KK +KIGRPGY++ KQRD 
Sbjct: 65  YLAHTQGKKHQTHLARRAAKEQRENPSVSKNNYIQTTRVIHKKTIKIGRPGYKIIKQRDS 124

Query: 126 SNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVPS 185
             GQ SLLFQ+DYPEI   + PRHR MSA+EQR+E P++ +QYLLFAAEPYETIAFK+P+
Sbjct: 125 KTGQLSLLFQIDYPEIESGLQPRHRIMSAFEQRVEQPNKDYQYLLFAAEPYETIAFKIPN 184

Query: 186 REVDKG---DTKFWTHWNKDTKQFFLQFSFR 213
           +E+D+    D KF+THW+++ K F LQ  F+
Sbjct: 185 KEIDRTTGPDGKFFTHWDRN-KTFTLQLYFK 214

Subunit of the splicing factor SF3A required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9P7L8|SAP62_SCHPO Pre-mRNA-splicing factor sap62 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sap62 PE=1 SV=1

 Score =  257 bits (657), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 131/226 (57%), Positives = 164/226 (72%), Gaps = 16/226 (7%)

Query: 1   MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
           MDYQNR G + GGGGVA + E+N  RRERLR+LALETIDL+KDPY MKNHLG++EC+LCL
Sbjct: 1   MDYQNRAGVRFGGGGVAGYQETNAARRERLRKLALETIDLSKDPYLMKNHLGTFECRLCL 60

Query: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPE------KPRVEPKK-FVKIG 113
           T H NE SYL HTQGKKHQ NLARR A E K + Q+ AP+      +  V+ KK  VKIG
Sbjct: 61  TTHANENSYLTHTQGKKHQTNLARRQALENKKS-QENAPQVLLGISQSHVQVKKSVVKIG 119

Query: 114 RPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAA 173
           RPGY+V+K R+  +G+  L FQ+ YP+I  +  PR+R MSAYEQR+E PDRK+QYL+ AA
Sbjct: 120 RPGYKVSKIREAESGKFGLRFQIKYPDIEVNAKPRYRIMSAYEQRVEAPDRKFQYLVVAA 179

Query: 174 EPYETIAFKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNESKPS 219
           EPYE+IAFK     +D+   KFW++W  D   + +QF F N +K S
Sbjct: 180 EPYESIAFK-----IDRAPGKFWSYW--DAPTYTIQF-FYNLTKIS 217

Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q07350|PRP11_YEAST Pre-mRNA-splicing factor PRP11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP11 PE=1 SV=1

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 108/244 (44%), Gaps = 48/244 (19%)

Query: 16  VASWSESNRDRRERLRQLALE------TIDLNKD------PYFMKNHLGSYECKLCLTLH 63
           +AS S+ N  RR+ +  L  +      T    KD      PY  KNH G   CKLC T+H
Sbjct: 16  IASESQFNLQRRKEVESLLSKGENVPYTFQDEKDDQVRSNPYIYKNHSGKLVCKLCNTMH 75

Query: 64  NNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPA-------PEKPRVEPKKFVKIG--R 114
            +  S   H  GKKH  N+ RR     K +  +          ++  +E K+ +K     
Sbjct: 76  MSWSSVERHLGGKKHGLNVLRRGISIEKSSLGREGQTTHDFRQQQKIIEAKQSLKNNGTI 135

Query: 115 PGYRVTKQRDPSNGQQSLLFQVDY-PEI------ADD---VFPRHRFMSAYEQRIEPPDR 164
           P  ++   ++P NG   L  QV+Y  E+      +DD   V P  R +S  E   +   +
Sbjct: 136 PVCKIATVKNPKNGSVGLAIQVNYSSEVKENSVDSDDKAKVPPLIRIVSGLELS-DTKQK 194

Query: 165 KWQYLLFAAEPYETIAFKVPSRE---------------VDKGDTKFWTHWNKDTKQFFLQ 209
             ++L+ A EP+E IA ++P  E               VD+ + K  T W+  +K +++Q
Sbjct: 195 GKKFLVIAYEPFENIAIELPPNEILFSENNDMDNNNDGVDELNKK-CTFWDAISKLYYVQ 253

Query: 210 FSFR 213
           F F+
Sbjct: 254 FFFK 257


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.137    0.443 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146,632,714
Number of Sequences: 539616
Number of extensions: 8228102
Number of successful extensions: 156241
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1739
Number of HSP's successfully gapped in prelim test: 1531
Number of HSP's that attempted gapping in prelim test: 56122
Number of HSP's gapped (non-prelim): 38849
length of query: 286
length of database: 191,569,459
effective HSP length: 116
effective length of query: 170
effective length of database: 128,974,003
effective search space: 21925580510
effective search space used: 21925580510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)

mRNA splicing factors, PRP9, PRP11, and PRP21, are necessary for addition of the U2 snRNP to the pre-mRNA in an early step of spliceosome assembly.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
241122592	235	splicing factor 3A subunit, putative [Ix	0.779	0.948	0.856	1e-112
156552244	263	PREDICTED: splicing factor 3A subunit 2-	0.765	0.832	0.922	1e-112
346470839	248	hypothetical protein [Amblyomma maculatu	0.779	0.899	0.856	1e-112
289740415	267	splicing factor 3A subunit 2 [Glossina m	0.849	0.910	0.813	1e-112
432915931	290	PREDICTED: splicing factor 3A subunit 2-	0.909	0.896	0.742	1e-112
332030557	274	Splicing factor 3A subunit 2 [Acromyrmex	0.751	0.784	0.925	1e-111
307170169	274	Splicing factor 3A subunit 2 [Camponotus	0.762	0.795	0.922	1e-111
66526752	274	PREDICTED: splicing factor 3A subunit 2-	0.762	0.795	0.922	1e-111
322790906	274	hypothetical protein SINV_10875 [Solenop	0.762	0.795	0.922	1e-111
383849657	274	PREDICTED: splicing factor 3A subunit 2-	0.762	0.795	0.922	1e-111

>gi|241122592|ref|XP_002403593.1| splicing factor 3A subunit, putative [Ixodes scapularis] gi|215493483|gb|EEC03124.1| splicing factor 3A subunit, putative [Ixodes scapularis]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 191/223 (85%), Positives = 206/223 (92%)

Query: 1   MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
           MD+Q+RPGGKTG GGVASWSESNRDRRERLRQLALETIDL KDPYFMKNHLGSYECKLCL
Sbjct: 1   MDFQHRPGGKTGSGGVASWSESNRDRRERLRQLALETIDLQKDPYFMKNHLGSYECKLCL 60

Query: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
           TLHNNEGSYLAHTQGKKHQANLARRAAKEAKD+P QPAP KPRV+ KKFVKIGRPGYRVT
Sbjct: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDSPIQPAPAKPRVDIKKFVKIGRPGYRVT 120

Query: 121 KQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIA 180
           KQRD + GQQSLLFQVDYPE+ D V PRHRFMSAYEQ++EPPD+KWQYLLFAAEPYETIA
Sbjct: 121 KQRDGTTGQQSLLFQVDYPEVGDSVVPRHRFMSAYEQKVEPPDKKWQYLLFAAEPYETIA 180

Query: 181 FKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNESKPSFRPP 223
           FKVPSREVDK +TKFWT WN+D+KQFFLQFSF+ ++KP    P
Sbjct: 181 FKVPSREVDKSETKFWTLWNRDSKQFFLQFSFKLDNKPKLLGP 223

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156552244|ref|XP_001606508.1| PREDICTED: splicing factor 3A subunit 2-like [Nasonia vitripennis]

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/220 (92%), Positives = 212/220 (96%), Gaps = 1/220 (0%)

Query: 1   MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
           MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL
Sbjct: 1   MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60

Query: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
           TLHNNEGSYLAHTQGKKHQANLARRAAKEAK+APQ  APEKPRVEPKKFVKIGRPGYRVT
Sbjct: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKEAPQTLAPEKPRVEPKKFVKIGRPGYRVT 120

Query: 121 KQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIA 180
           KQRDP +GQQSLLFQVDYPE+AD++ PRHRFMSAYEQR+EPPDRKWQYLLFAAEPYETIA
Sbjct: 121 KQRDPESGQQSLLFQVDYPEVADNIIPRHRFMSAYEQRVEPPDRKWQYLLFAAEPYETIA 180

Query: 181 FKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNESKPSF 220
           FKVPSREVDK + KFWTHWNKDTKQFFLQF+F+NE KPS 
Sbjct: 181 FKVPSREVDKAEGKFWTHWNKDTKQFFLQFAFKNE-KPSI 219

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346470839|gb|AEO35264.1| hypothetical protein [Amblyomma maculatum]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 191/223 (85%), Positives = 205/223 (91%)

Query: 1   MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
           MD+Q+RPGGKTG GGVASWSESNRDRRERLRQLALETIDL KDPYFMKNHLGSYECKLCL
Sbjct: 1   MDFQHRPGGKTGSGGVASWSESNRDRRERLRQLALETIDLQKDPYFMKNHLGSYECKLCL 60

Query: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
           TLHNNEGSYLAHTQGKKHQANLARRAAKEAKD+P QPAP KPRV+ KKFVKIGRPGYRVT
Sbjct: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDSPIQPAPAKPRVDIKKFVKIGRPGYRVT 120

Query: 121 KQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIA 180
           KQRD   GQQSLLFQVDYPE+ D+V PRHRFMSAYEQ++EPPD+KWQYLLFAAEPYETIA
Sbjct: 121 KQRDGETGQQSLLFQVDYPEVNDNVVPRHRFMSAYEQKVEPPDKKWQYLLFAAEPYETIA 180

Query: 181 FKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNESKPSFRPP 223
           FKVPSREVDK + KFWT WN+D+KQFFLQFSF+ E+KP    P
Sbjct: 181 FKVPSREVDKSEGKFWTLWNRDSKQFFLQFSFKLEAKPKILAP 223

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289740415|gb|ADD18955.1| splicing factor 3A subunit 2 [Glossina morsitans morsitans]

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 201/247 (81%), Positives = 214/247 (86%), Gaps = 4/247 (1%)

Query: 1   MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
           MD+QNR GGKTG GGVASWSE+NRDR+ERLRQLALETIDLNKDPYFMKNHLGSYECKLCL
Sbjct: 1   MDFQNRAGGKTGSGGVASWSETNRDRKERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60

Query: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
           TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP   APEKPRVEPKKFVKIGRPGYRVT
Sbjct: 61  TLHNNEGSYLAHTQGKKHQENLARRAAKEAKEAPSMMAPEKPRVEPKKFVKIGRPGYRVT 120

Query: 121 KQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIA 180
           KQRDPSNGQQSLLFQ+DYPEI + V PRHRFMSAYEQ+IEPPDRKWQYLLFAAEPYETI 
Sbjct: 121 KQRDPSNGQQSLLFQIDYPEITEGVIPRHRFMSAYEQKIEPPDRKWQYLLFAAEPYETIG 180

Query: 181 FKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNESKPSFRPPPSPSPAIRNNLPPPPML 240
           FKVPSREV+K + KFWTHWN+DTKQFFLQFSF+ E K      P P P +   L PP   
Sbjct: 181 FKVPSREVEKTEGKFWTHWNRDTKQFFLQFSFKLEPKII----PPPPPQLHRALGPPGGF 236

Query: 241 PPPPPPQ 247
             P PP+
Sbjct: 237 SIPGPPR 243

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|432915931|ref|XP_004079236.1| PREDICTED: splicing factor 3A subunit 2-like [Oryzias latipes]

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/283 (74%), Positives = 228/283 (80%), Gaps = 23/283 (8%)

Query: 1   MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
           MD+Q+R GGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct: 1   MDFQHRAGGKTGSGGVASASESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60

Query: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
           TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK++P QPAP K +VE KKFVKIGRPGY+VT
Sbjct: 61  TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKESPAQPAPAKLKVEVKKFVKIGRPGYKVT 120

Query: 121 KQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIA 180
           KQRDP  GQQSLLFQ+DYPEIA+ + PRHRFMSAYEQRIEPPDR+WQYLLFAAEPYETIA
Sbjct: 121 KQRDPEIGQQSLLFQIDYPEIAEGIGPRHRFMSAYEQRIEPPDRRWQYLLFAAEPYETIA 180

Query: 181 FKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNESKPSFRPPPSPSPAIRNNLPPPPML 240
           FKVPSRE+DK +T+FWTHWNK+TKQFFLQF F+ E   S             NL PP M 
Sbjct: 181 FKVPSREIDKAETRFWTHWNKETKQFFLQFHFKMEKAIS----------QSGNLLPPGM- 229

Query: 241 PPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPP 283
              PPP M GP  P      NMPPPP   GGM    ++PP PP
Sbjct: 230 -KHPPPLMSGPRQPGD----NMPPPP---GGM----SVPPLPP 260

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|332030557|gb|EGI70245.1| Splicing factor 3A subunit 2 [Acromyrmex echinatior]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 199/215 (92%), Positives = 209/215 (97%)

Query: 1   MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
           MD+QNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL
Sbjct: 1   MDFQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60

Query: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
           TLHNNEGSYLAHTQGKKHQANLARRAAKEAK+APQ  APEKPRVEPKKFVKIGRPGYRVT
Sbjct: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKEAPQTLAPEKPRVEPKKFVKIGRPGYRVT 120

Query: 121 KQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIA 180
           KQRDP +GQQSLLFQVDYPE+AD+V PRHRFMSAYEQR+EPPDRKWQYLLFAAEPYETIA
Sbjct: 121 KQRDPESGQQSLLFQVDYPEVADNVIPRHRFMSAYEQRVEPPDRKWQYLLFAAEPYETIA 180

Query: 181 FKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNE 215
           FKVPSREV+K + KFWTHWNKDTKQFFLQF+F+NE
Sbjct: 181 FKVPSREVEKAEGKFWTHWNKDTKQFFLQFAFKNE 215

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307170169|gb|EFN62576.1| Splicing factor 3A subunit 2 [Camponotus floridanus]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/219 (92%), Positives = 212/219 (96%), Gaps = 1/219 (0%)

Query: 1   MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
           MD+QNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL
Sbjct: 1   MDFQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60

Query: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
           TLHNNEGSYLAHTQGKKHQANLARRAAKEAK+APQ  APEKPRVEPKKFVKIGRPGYRVT
Sbjct: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKEAPQTLAPEKPRVEPKKFVKIGRPGYRVT 120

Query: 121 KQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIA 180
           KQRDP +GQQSLLFQVDYPE+AD+V PRHRFMSAYEQR+EPPDRKWQYLLFAAEPYETIA
Sbjct: 121 KQRDPESGQQSLLFQVDYPEVADNVIPRHRFMSAYEQRVEPPDRKWQYLLFAAEPYETIA 180

Query: 181 FKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNESKPS 219
           FKVPSREV+K + KFWTHWNKDTKQFFLQF+F+NE KPS
Sbjct: 181 FKVPSREVEKAEGKFWTHWNKDTKQFFLQFAFKNE-KPS 218

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66526752|ref|XP_624713.1| PREDICTED: splicing factor 3A subunit 2-like [Apis mellifera] gi|380014361|ref|XP_003691203.1| PREDICTED: splicing factor 3A subunit 2-like [Apis florea]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/219 (92%), Positives = 212/219 (96%), Gaps = 1/219 (0%)

Query: 1   MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
           MD+QNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL
Sbjct: 1   MDFQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60

Query: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
           TLHNNEGSYLAHTQGKKHQANLARRAAKEAK+APQ  APEKPRVEPKKFVKIGRPGYRVT
Sbjct: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKEAPQTLAPEKPRVEPKKFVKIGRPGYRVT 120

Query: 121 KQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIA 180
           KQRDP +GQQSLLFQVDYPE+AD+V PRHRFMSAYEQR+EPPDRKWQYLLFAAEPYETIA
Sbjct: 121 KQRDPESGQQSLLFQVDYPEVADNVIPRHRFMSAYEQRVEPPDRKWQYLLFAAEPYETIA 180

Query: 181 FKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNESKPS 219
           FKVPSREV+K + KFWTHWNKDTKQFFLQF+F+NE KPS
Sbjct: 181 FKVPSREVEKAEGKFWTHWNKDTKQFFLQFAFKNE-KPS 218

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322790906|gb|EFZ15572.1| hypothetical protein SINV_10875 [Solenopsis invicta]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/219 (92%), Positives = 212/219 (96%), Gaps = 1/219 (0%)

Query: 1   MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
           MD+QNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL
Sbjct: 1   MDFQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60

Query: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
           TLHNNEGSYLAHTQGKKHQANLARRAAKEAK+APQ  APEKPRVEPKKFVKIGRPGYRVT
Sbjct: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKEAPQTLAPEKPRVEPKKFVKIGRPGYRVT 120

Query: 121 KQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIA 180
           KQRDP +GQQSLLFQVDYPE+AD+V PRHRFMSAYEQR+EPPDRKWQYLLFAAEPYETIA
Sbjct: 121 KQRDPESGQQSLLFQVDYPEVADNVIPRHRFMSAYEQRVEPPDRKWQYLLFAAEPYETIA 180

Query: 181 FKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNESKPS 219
           FKVPSREV+K + KFWTHWNKDTKQFFLQF+F+NE KPS
Sbjct: 181 FKVPSREVEKAEGKFWTHWNKDTKQFFLQFAFKNE-KPS 218

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849657|ref|XP_003700461.1| PREDICTED: splicing factor 3A subunit 2-like [Megachile rotundata]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/219 (92%), Positives = 212/219 (96%), Gaps = 1/219 (0%)

Query: 1   MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
           MD+QNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL
Sbjct: 1   MDFQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60

Query: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
           TLHNNEGSYLAHTQGKKHQANLARRAAKEAK+APQ  APEKPRVEPKKFVKIGRPGYRVT
Sbjct: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKEAPQTLAPEKPRVEPKKFVKIGRPGYRVT 120

Query: 121 KQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIA 180
           KQRDP +GQQSLLFQVDYPE+AD+V PRHRFMSAYEQR+EPPDRKWQYLLFAAEPYETIA
Sbjct: 121 KQRDPESGQQSLLFQVDYPEVADNVIPRHRFMSAYEQRVEPPDRKWQYLLFAAEPYETIA 180

Query: 181 FKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNESKPS 219
           FKVPSREV+K + KFWTHWNKDTKQFFLQF+F+NE KPS
Sbjct: 181 FKVPSREVEKAEGKFWTHWNKDTKQFFLQFAFKNE-KPS 218

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
FB|FBgn0036314	264	CG10754 [Drosophila melanogast	0.751	0.814	0.870	2.9e-103
ZFIN|ZDB-GENE-040426-897	278	sf3a2 "splicing factor 3a, sub	0.751	0.773	0.860	1.3e-102
RGD|1308627	471	Sf3a2 "splicing factor 3a, sub	0.751	0.456	0.860	5.4e-102
UNIPROTKB|A5PJN8	477	SF3A2 "Splicing factor 3A subu	0.751	0.450	0.855	6.9e-102
UNIPROTKB|G3MW14	411	SF3A2 "Splicing factor 3A subu	0.751	0.523	0.855	6.9e-102
UNIPROTKB|J9P6E2	478	SF3A2 "Uncharacterized protein	0.751	0.449	0.855	6.9e-102
UNIPROTKB|Q15428	464	SF3A2 "Splicing factor 3A subu	0.751	0.463	0.855	6.9e-102
WB|WBGene00008683	222	repo-1 [Caenorhabditis elegans	0.748	0.963	0.786	2.7e-93
UNIPROTKB|Q19335	222	repo-1 "Protein REPO-1" [Caeno	0.748	0.963	0.786	2.7e-93
UNIPROTKB|E2QXZ1	463	SF3A2 "Uncharacterized protein	0.737	0.455	0.785	8.6e-88

FB|FBgn0036314 CG10754 [Drosophila melanogaster (taxid:7227)]

 Score = 1023 (365.2 bits), Expect = 2.9e-103, P = 2.9e-103
 Identities = 188/216 (87%), Positives = 201/216 (93%)

Query:     1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
             MD+QNR GGKTG GGVASWSE+NRDR+ERLRQLALETIDLNKDPYFMKNHLGSYECKLCL
Sbjct:     1 MDFQNRAGGKTGSGGVASWSETNRDRKERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60

Query:    61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQP-APEKPRVEPKKFVKIGRPGYRV 119
             TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP    APEKPRVEPKKFVKIGRPGYRV
Sbjct:    61 TLHNNEGSYLAHTQGKKHQDNLARRAAKEAKEAPSSLLAPEKPRVEPKKFVKIGRPGYRV 120

Query:   120 TKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETI 179
             TKQR+ SNGQQSLLFQVDYPEI + + PRHRFMSAYEQ+IEPPDRKWQYLLFAAEPYETI
Sbjct:   121 TKQRELSNGQQSLLFQVDYPEITESIVPRHRFMSAYEQKIEPPDRKWQYLLFAAEPYETI 180

Query:   180 AFKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNE 215
              FKVPSREV+K + KFWTHWN+DTKQFFLQF+F+ E
Sbjct:   181 GFKVPSREVEKSEGKFWTHWNRDTKQFFLQFAFKFE 216

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS

GO:0005681 "spliceosomal complex" evidence=ISS

GO:0005686 "U2 snRNP" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

ZFIN|ZDB-GENE-040426-897 sf3a2 "splicing factor 3a, subunit 2" [Danio rerio (taxid:7955)]

 Score = 1017 (363.1 bits), Expect = 1.3e-102, P = 1.3e-102
 Identities = 185/215 (86%), Positives = 202/215 (93%)

Query:     1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
             MD+Q+R GGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct:     1 MDFQHRAGGKTGSGGVASASESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60

Query:    61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
             TLHNNEGSYLAHTQGKKHQ+NLARRAAKEAK+AP QPAPEK +VE KKFVKIGRPGY+VT
Sbjct:    61 TLHNNEGSYLAHTQGKKHQSNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVT 120

Query:   121 KQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIA 180
             KQRDP  GQQSLLFQ+DYPEIA+ + PRHRFMSAYEQRIEPPDR+WQYLLFAAEPYETIA
Sbjct:   121 KQRDPEIGQQSLLFQIDYPEIAEGIGPRHRFMSAYEQRIEPPDRRWQYLLFAAEPYETIA 180

Query:   181 FKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNE 215
             FKVPSRE+DK +T+FWTHWN++TKQFFLQF F+ E
Sbjct:   181 FKVPSREIDKAETRFWTHWNRETKQFFLQFHFKME 215

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|1308627 Sf3a2 "splicing factor 3a, subunit 2" [Rattus norvegicus (taxid:10116)]

 Score = 1011 (360.9 bits), Expect = 5.4e-102, P = 5.4e-102
 Identities = 185/215 (86%), Positives = 199/215 (92%)

Query:     1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
             MD+Q+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct:     1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60

Query:    61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
             TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP QPAPEK +VE KKFVKIGRPGY+VT
Sbjct:    61 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVT 120

Query:   121 KQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIA 180
             KQRD   GQQSLLFQ+DYPEIA+ V PRHRFMSAYEQRIEPPDR+WQYLL AAEPYETIA
Sbjct:   121 KQRDTEMGQQSLLFQIDYPEIAEGVMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIA 180

Query:   181 FKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNE 215
             FKVPSRE+DK + KFWTHWN++TKQFFLQF F+ E
Sbjct:   181 FKVPSREIDKAEGKFWTHWNRETKQFFLQFHFKME 215

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA;ISO

GO:0006397 "mRNA processing" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

UNIPROTKB|A5PJN8 SF3A2 "Splicing factor 3A subunit 2" [Bos taurus (taxid:9913)]

 Score = 1010 (360.6 bits), Expect = 6.9e-102, P = 6.9e-102
 Identities = 184/215 (85%), Positives = 199/215 (92%)

Query:     1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
             MD+Q+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct:     1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60

Query:    61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
             TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP QPAPEK +VE KKFVKIGRPGY+VT
Sbjct:    61 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVT 120

Query:   121 KQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIA 180
             KQRD   GQQSLLFQ+DYPEIA+ + PRHRFMSAYEQRIEPPDR+WQYLL AAEPYETIA
Sbjct:   121 KQRDTEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIA 180

Query:   181 FKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNE 215
             FKVPSRE+DK + KFWTHWN++TKQFFLQF F+ E
Sbjct:   181 FKVPSREIDKAEGKFWTHWNRETKQFFLQFHFKME 215

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|G3MW14 SF3A2 "Splicing factor 3A subunit 2" [Bos taurus (taxid:9913)]

 Score = 1010 (360.6 bits), Expect = 6.9e-102, P = 6.9e-102
 Identities = 184/215 (85%), Positives = 199/215 (92%)

Query:     1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
             MD+Q+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct:     1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60

Query:    61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
             TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP QPAPEK +VE KKFVKIGRPGY+VT
Sbjct:    61 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVT 120

Query:   121 KQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIA 180
             KQRD   GQQSLLFQ+DYPEIA+ + PRHRFMSAYEQRIEPPDR+WQYLL AAEPYETIA
Sbjct:   121 KQRDTEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIA 180

Query:   181 FKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNE 215
             FKVPSRE+DK + KFWTHWN++TKQFFLQF F+ E
Sbjct:   181 FKVPSREIDKAEGKFWTHWNRETKQFFLQFHFKME 215

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|J9P6E2 SF3A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1010 (360.6 bits), Expect = 6.9e-102, P = 6.9e-102
 Identities = 184/215 (85%), Positives = 199/215 (92%)

Query:     1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
             MD+Q+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct:     1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60

Query:    61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
             TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP QPAPEK +VE KKFVKIGRPGY+VT
Sbjct:    61 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVT 120

Query:   121 KQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIA 180
             KQRD   GQQSLLFQ+DYPEIA+ + PRHRFMSAYEQRIEPPDR+WQYLL AAEPYETIA
Sbjct:   121 KQRDTEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIA 180

Query:   181 FKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNE 215
             FKVPSRE+DK + KFWTHWN++TKQFFLQF F+ E
Sbjct:   181 FKVPSREIDKAEGKFWTHWNRETKQFFLQFHFKME 215

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q15428 SF3A2 "Splicing factor 3A subunit 2" [Homo sapiens (taxid:9606)]

 Score = 1010 (360.6 bits), Expect = 6.9e-102, P = 6.9e-102
 Identities = 184/215 (85%), Positives = 199/215 (92%)

Query:     1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
             MD+Q+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct:     1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60

Query:    61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
             TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP QPAPEK +VE KKFVKIGRPGY+VT
Sbjct:    61 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVT 120

Query:   121 KQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIA 180
             KQRD   GQQSLLFQ+DYPEIA+ + PRHRFMSAYEQRIEPPDR+WQYLL AAEPYETIA
Sbjct:   121 KQRDSEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIA 180

Query:   181 FKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNE 215
             FKVPSRE+DK + KFWTHWN++TKQFFLQF F+ E
Sbjct:   181 FKVPSREIDKAEGKFWTHWNRETKQFFLQFHFKME 215

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=TAS

GO:0000389 "mRNA 3'-splice site recognition" evidence=TAS

GO:0005681 "spliceosomal complex" evidence=IDA

GO:0006397 "mRNA processing" evidence=IMP

GO:0005654 "nucleoplasm" evidence=TAS

GO:0008380 "RNA splicing" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

WB|WBGene00008683 repo-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
 Identities = 169/215 (78%), Positives = 191/215 (88%)

Query:     1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
             MD+QNR GGKTG GGVAS +++  DRRERLRQLALETIDL KDPYFM+NH+G+YECKLCL
Sbjct:     1 MDFQNRAGGKTGSGGVASAADAGVDRRERLRQLALETIDLQKDPYFMRNHIGTYECKLCL 60

Query:    61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
             TLHNNEGSYLAHTQGKKHQANLARRAAKE  + P  PAP+K  VE KKFVKIGRPGY+VT
Sbjct:    61 TLHNNEGSYLAHTQGKKHQANLARRAAKEQSEQPFLPAPQKAAVETKKFVKIGRPGYKVT 120

Query:   121 KQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIA 180
             K+RDP  GQQ+LLFQ+DYPEIAD + PRHRFMSAYEQ+I+PPD++WQYLLFAAEPYETI 
Sbjct:   121 KERDPGAGQQALLFQIDYPEIADGIAPRHRFMSAYEQKIQPPDKRWQYLLFAAEPYETIG 180

Query:   181 FKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNE 215
             FK+PSREVDK + KFWT WNKDTKQFFLQ +F+ E
Sbjct:   181 FKIPSREVDKSE-KFWTMWNKDTKQFFLQVAFKLE 214

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

GO:0007281 "germ cell development" evidence=IMP

GO:0018991 "oviposition" evidence=IMP

UNIPROTKB|Q19335 repo-1 "Protein REPO-1" [Caenorhabditis elegans (taxid:6239)]

 Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
 Identities = 169/215 (78%), Positives = 191/215 (88%)

Query:     1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
             MD+QNR GGKTG GGVAS +++  DRRERLRQLALETIDL KDPYFM+NH+G+YECKLCL
Sbjct:     1 MDFQNRAGGKTGSGGVASAADAGVDRRERLRQLALETIDLQKDPYFMRNHIGTYECKLCL 60

Query:    61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
             TLHNNEGSYLAHTQGKKHQANLARRAAKE  + P  PAP+K  VE KKFVKIGRPGY+VT
Sbjct:    61 TLHNNEGSYLAHTQGKKHQANLARRAAKEQSEQPFLPAPQKAAVETKKFVKIGRPGYKVT 120

Query:   121 KQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIA 180
             K+RDP  GQQ+LLFQ+DYPEIAD + PRHRFMSAYEQ+I+PPD++WQYLLFAAEPYETI 
Sbjct:   121 KERDPGAGQQALLFQIDYPEIADGIAPRHRFMSAYEQKIQPPDKRWQYLLFAAEPYETIG 180

Query:   181 FKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNE 215
             FK+PSREVDK + KFWT WNKDTKQFFLQ +F+ E
Sbjct:   181 FKIPSREVDKSE-KFWTMWNKDTKQFFLQVAFKLE 214

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|E2QXZ1 SF3A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 877 (313.8 bits), Expect = 8.6e-88, P = 8.6e-88
 Identities = 172/219 (78%), Positives = 184/219 (84%)

Query:     1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
             MD+Q+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct:     1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60

Query:    61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVT 120
             TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP QPAPEK +VE KKFVKIGRPGY+VT
Sbjct:    61 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVT 120

Query:   121 KQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIA 180
             KQRD   GQQSLLFQ+DYPEIA+ + PRHRFMSAYEQRIEPPDR+WQYLL AAEPYETIA
Sbjct:   121 KQRDTEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIA 180

Query:   181 FKVPSREVDKGDTKFWTHWNKD----TKQFFLQFSFRNE 215
             FKV    V  G T             + QFFLQF F+ E
Sbjct:   181 FKV----VQAGSTDPRGQGPHSALCVSVQFFLQFHFKME 215

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q15428	SF3A2_HUMAN	No assigned EC number	0.8447	0.7657	0.4719	yes	N/A
Q54B65	SF3A2_DICDI	No assigned EC number	0.5876	0.7132	0.9488	yes	N/A
Q62203	SF3A2_MOUSE	No assigned EC number	0.8036	0.7307	0.44	yes	N/A
Q9P7L8	SAP62_SCHPO	No assigned EC number	0.5796	0.7342	0.9677	yes	N/A
A5PJN8	SF3A2_BOVIN	No assigned EC number	0.8447	0.7657	0.4591	yes	N/A
Q6AXT8	SF3A2_RAT	No assigned EC number	0.8493	0.7657	0.4649	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	286
COG5246	222	COG5246, PRP11, Splicing factor 3a, subunit 2 [RNA	8e-77
smart01050	129	smart01050, CactinC_cactus, Cactus-binding C-termi	7e-32
smart00451	35	smart00451, ZnF_U1, U1-like zinc finger	1e-09
pfam12874	25	pfam12874, zf-met, Zinc-finger of C2H2 type	7e-07
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	9e-06
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	5e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-05
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	8e-05
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	3e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	3e-04
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	4e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	6e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	6e-04
pfam04652	315	pfam04652, DUF605, Vta1 like	8e-04
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	8e-04
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	9e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.001
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.001
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.002
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.002
pfam10349	111	pfam10349, WWbp, WW-domain ligand protein	0.002
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	0.003
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	0.003
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.004
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	0.004

>gnl|CDD|227571 COG5246, PRP11, Splicing factor 3a, subunit 2 [RNA processing and modification]

 Score =  233 bits (594), Expect = 8e-77
 Identities = 86/228 (37%), Positives = 125/228 (54%), Gaps = 15/228 (6%)

Query: 1   MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
           M+Y  R G KTGGGG AS  + N+ RR R   L     DL  DPY  KNH G Y C LC 
Sbjct: 1   MNYGGRGGSKTGGGGTASEIKKNKKRRSRQLLLEAYGQDLMDDPYLSKNHTGKYVCLLCK 60

Query: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQ-QPA----PEKPRVEPKK-FVKIGR 114
           T H  E SY+ H +GKKH+ N +RR+ +++    + Q       ++  +E K+   + G 
Sbjct: 61  TKHLTEMSYVKHREGKKHKENSSRRSEEKSSLGRENQTTHDFRQQQKIIEAKQSLKRSGI 120

Query: 115 PGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAE 174
           P Y+V    +P  G++ L  QV+Y +   +  P++R +S+ EQ +E  D  ++YL+FA E
Sbjct: 121 PSYKVRSLVEPKGGRRGLGIQVNYEDDLAEEMPQYRIVSSLEQNVEEYDESFRYLVFACE 180

Query: 175 PYETIAFKVPSREVDKGDTKFW---THWNKDTKQFFLQFSFRNESKPS 219
           PYE IAFK  ++E+D     F      W+ +T  + LQF F  E+ P 
Sbjct: 181 PYENIAFKFENKEID-----FLSIYEDWDAETGTYTLQFFF-LEAGPE 222

Length = 222

>gnl|CDD|214996 smart01050, CactinC_cactus, Cactus-binding C-terminus of cactin protein

 Score =  114 bits (287), Expect = 7e-32
 Identities = 37/122 (30%), Positives = 51/122 (41%), Gaps = 10/122 (8%)

Query: 99  PEKPRVEPKKFVKIGRPGYRVTK---QRDPSNGQQSLLFQVDYPEIAD-DVFPRHRFMSA 154
             KPR   +         Y  T       P    Q   F + YP++ D    PR+R  S+
Sbjct: 7   LRKPRYFNRVKTGYDWNKYNQTHYDNDNPPPKIVQGYKFNIFYPDLIDKGKAPRYRIESS 66

Query: 155 YEQRIEPPDRKWQYLLF-AAEPYETIAFKVPSREVDKGDTK-FWTHWNKDTKQFFLQFSF 212
           +E   E PD     L F A  PYE IAFK+ +RE D      F + ++       LQF+F
Sbjct: 67  FEI--EKPDDDTCLLRFSAGPPYEDIAFKIVNREWDYSHRGGFKSSFDN--GILQLQFNF 122

Query: 213 RN 214
           + 
Sbjct: 123 KK 124

CactinC_cactus is the C-terminal 200 residues of the cactin protein which are necessary for the association of cactin with IkappaB-cactus as one of the intracellular members of the Rel complex. The Rel (NF-kappaB) pathway is conserved in invertebrates and vertebrates. In mammals, it controls the activities of the immune and inflammatory response genes as well as viral genes, and is critical for cell growth and survival. In Drosophila, the Rel pathway functions in the innate cellular and humoral immune response, in muscle development, and in the establishment of dorsal-ventral polarity in the early embryo. Most members of the family also have a Cactin_mid domain further upstream. Length = 129

>gnl|CDD|197732 smart00451, ZnF_U1, U1-like zinc finger

 Score = 52.3 bits (126), Expect = 1e-09
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 52 GSYECKLCLTLHNNEGSYLAHTQGKKHQANLARR 85
          G + CKLC     +E S  AH +GKKH+ N+ +R
Sbjct: 2  GGFYCKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins. Length = 35

>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type

 Score = 44.4 bits (106), Expect = 7e-07
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 54 YECKLCLTLHNNEGSYLAHTQGKKH 78
          + C+LC     +E    +H +GKKH
Sbjct: 1  FYCELCNVTFTSESQLKSHLRGKKH 25

This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding. Length = 25

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 46.3 bits (110), Expect = 9e-06
 Identities = 21/65 (32%), Positives = 23/65 (35%), Gaps = 1/65 (1%)

Query: 221 RPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPP 280
           R  P    A    L  P    P  PP   G  PPPP L      P P    +  +   PP
Sbjct: 679 RGDPVRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDL-PAAAGPAPCGSSLIASPTAPP 737

Query: 281 PPPPP 285
            P PP
Sbjct: 738 EPEPP 742

Length = 753

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 44.0 bits (104), Expect = 5e-05
 Identities = 16/72 (22%), Positives = 16/72 (22%), Gaps = 3/72 (4%)

Query: 218 PSFRPPPSPS-PAIRNNLPPPPMLPPPPPPQMMGPPPPPP--GLFGNMPPPPPHMGGMAP 274
               P               P   PP  PP    PP   P         P P       P
Sbjct: 172 LPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPP 231

Query: 275 TLAMPPPPPPPN 286
                P  PPP 
Sbjct: 232 LPPQLPQQPPPL 243

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 44.2 bits (104), Expect = 6e-05
 Identities = 23/65 (35%), Positives = 24/65 (36%), Gaps = 7/65 (10%)

Query: 221  RPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPP 280
            RP  S S     +   PP  P  PP     P  PPP      PPPPP      P    P 
Sbjct: 2888 RPAVSRST---ESFALPPDQPERPPQ----PQAPPPPQPQPQPPPPPQPQPPPPPPPRPQ 2940

Query: 281  PPPPP 285
            PP  P
Sbjct: 2941 PPLAP 2945

Length = 3151

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 43.0 bits (101), Expect = 8e-05
 Identities = 24/64 (37%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
              +         PPPP  PP P P      PPPP    N PPPPP         A PPP
Sbjct: 50  TAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPP-----VDPNAPPPP 104

Query: 282 PPPP 285
            P P
Sbjct: 105 APEP 108

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 26/91 (28%), Positives = 28/91 (30%), Gaps = 8/91 (8%)

Query: 204 KQFFLQFSFRNESKPSFRPPPSPSPAIRNNLPPPP--------MLPPPPPPQMMGPPPPP 255
           +    QF       P+  P P   P     L  P           PPP PPQ    PP P
Sbjct: 213 QVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQP 272

Query: 256 PGLFGNMPPPPPHMGGMAPTLAMPPPPPPPN 286
                    P PH G      A  PPP  P 
Sbjct: 273 QAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQ 303

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 22/82 (26%), Positives = 26/82 (31%), Gaps = 8/82 (9%)

Query: 208 LQFSFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPP 267
            Q +F  +  P   P     P        P    P P      PP PP       P  PP
Sbjct: 187 RQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQL-----PQQPP 241

Query: 268 HMGG---MAPTLAMPPPPPPPN 286
            +        +  MPPPPP P 
Sbjct: 242 PLQQPQFPGLSQQMPPPPPQPP 263

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 25/64 (39%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
           P P P P       P P   PPPPP    PP P P      PPPPP      P   + P 
Sbjct: 41  PAPPPPPPSTAAAAPAPA-APPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPN 99

Query: 282 PPPP 285
            PPP
Sbjct: 100 APPP 103

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 20/70 (28%), Positives = 24/70 (34%)

Query: 216 SKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPT 275
              S        P  + + PPP   PP P P    PPP PP           +     P 
Sbjct: 513 QSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPA 572

Query: 276 LAMPPPPPPP 285
            + PPPP P 
Sbjct: 573 DSSPPPPIPE 582

Length = 620

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 15/71 (21%), Positives = 17/71 (23%), Gaps = 5/71 (7%)

Query: 215 ESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAP 274
           E K   RP  +   A           P   P      P  PP        PP  +   A 
Sbjct: 377 EKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPP-----AAAPPAPVAAPAA 431

Query: 275 TLAMPPPPPPP 285
                 P   P
Sbjct: 432 AAPAAAPAAAP 442

Length = 618

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 23/71 (32%), Positives = 25/71 (35%), Gaps = 6/71 (8%)

Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPP------PHMGGMAPT 275
            P  PSP    + P    LPP P       PPP P    N  PPP      P      P 
Sbjct: 194 VPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPP 253

Query: 276 LAMPPPPPPPN 286
           L+   P PP  
Sbjct: 254 LSTAKPTPPSA 264

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 18/63 (28%), Positives = 20/63 (31%), Gaps = 9/63 (14%)

Query: 215 ESKPSFRPPPSPSPAIRNNLPPPP----MLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMG 270
           E       PP P+ AI N  PPPP         PPP      PP         P  P   
Sbjct: 51  EDVTVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEP-----EPEAPAEN 105

Query: 271 GMA 273
            + 
Sbjct: 106 TVT 108

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.2 bits (94), Expect = 9e-04
 Identities = 22/81 (27%), Positives = 29/81 (35%), Gaps = 13/81 (16%)

Query: 213 RNESKPSFRPPPSPSPAIRNNLPPPPML-----PPPPPPQMMGPPPPPPGLFGNMPPPPP 267
            +  +P+  P   P  A   N+PP   +     PPP PP+ + PP P           P 
Sbjct: 376 PSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTP-----ESAPK 430

Query: 268 HMGGMAPTLAMP---PPPPPP 285
                 P    P   PP PP 
Sbjct: 431 LTRAAIPVDEKPKYTPPAPPK 451

Length = 585

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 22/77 (28%), Positives = 25/77 (32%)

Query: 209 QFSFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPH 268
            +    +  P    P    PA       PP+ P  P        P  PGL   MPPPPP 
Sbjct: 202 GYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQ 261

Query: 269 MGGMAPTLAMPPPPPPP 285
                     P   PPP
Sbjct: 262 PPQQQQQPPQPQAQPPP 278

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 40.3 bits (94), Expect = 0.001
 Identities = 19/67 (28%), Positives = 21/67 (31%)

Query: 215  ESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAP 274
            +       P +P P      PPPP  P PPPP    P PP            P      P
Sbjct: 2903 DQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQP 2962

Query: 275  TLAMPPP 281
             L    P
Sbjct: 2963 WLGALVP 2969

Length = 3151

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 20/75 (26%), Positives = 23/75 (30%), Gaps = 2/75 (2%)

Query: 214 NESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPP--GLFGNMPPPPPHMGG 271
           + S  +  PPP           PP   P    P    PPPPP       N P   P    
Sbjct: 516 SASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSS 575

Query: 272 MAPTLAMPPPPPPPN 286
             P +   P P P  
Sbjct: 576 PPPPIPEEPTPSPTK 590

Length = 620

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 16/72 (22%), Positives = 22/72 (30%), Gaps = 10/72 (13%)

Query: 214 NESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMA 273
            +   +   P  P+PA             PP   +     PPP       PP P    +A
Sbjct: 369 AKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPP------VPPRP----VA 418

Query: 274 PTLAMPPPPPPP 285
           P +   P   P 
Sbjct: 419 PPVPHTPESAPK 430

Length = 585

>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 19/62 (30%), Positives = 21/62 (33%)

Query: 224 PSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPP 283
             P P    +L P P       P   GPPPP       + P PP            PPPP
Sbjct: 46  YYPPPGAYVHLEPLPAYGQYAAPPPYGPPPPYYPAPPGVYPTPPPPNSGYMADPQEPPPP 105

Query: 284 PP 285
            P
Sbjct: 106 YP 107

The WWbp domain is characterized by several short PY and PT-like motifs of the PPPPY form. These appear to bind directly to the WW domains of WWP1 and WWP2 and other such diverse proteins as dystrophin and YAP (Yes-associated protein). This is the WW-domain binding protein WWbp via PY and PY_like motifs. The presence of a phosphotyrosine residue in the pWBP-1 peptide abolishes WW domain binding which suggests a potential regulatory role for tyrosine phosphorylation in modulating WW domain-ligand interactions. Given the likelihood that WWP1 and WWP2 function as E3 ubiquitin-protein ligases, it is possible that initial substrate-specific recognition occurs via WW domain-substrate protein interaction followed by ubiquitin transfer and subsequent proteolysis. This domain lies just downstream of the GRAM (pfam02893) in many members. Length = 111

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 38.8 bits (90), Expect = 0.003
 Identities = 17/32 (53%), Positives = 17/32 (53%), Gaps = 6/32 (18%)

Query: 236 PPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPP 267
           PP   PPPPPP    PP  PP      PPPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPP------PPPPP 30

Length = 2365

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 38.8 bits (90), Expect = 0.003
 Identities = 21/46 (45%), Positives = 22/46 (47%), Gaps = 19/46 (41%)

Query: 240 LPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPP 285
           LPP  PP    PPPPPPG        PP         + PPPPPPP
Sbjct: 4   LPPGNPP----PPPPPPGF------EPP---------SQPPPPPPP 30

Length = 2365

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 16/69 (23%), Positives = 20/69 (28%), Gaps = 2/69 (2%)

Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
           P+  P    + A      P      P  P    PP P        P   P     A  +A
Sbjct: 389 PAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAA--VA 446

Query: 278 MPPPPPPPN 286
           + P PP   
Sbjct: 447 LAPAPPAQA 455

Length = 618

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 38.4 bits (89), Expect = 0.004
 Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 14/41 (34%)

Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGL 258
           P   PPP          PPPP   PP  P    PPPPPPG+
Sbjct: 6   PGNPPPP----------PPPPGFEPPSQP----PPPPPPGV 32

Length = 2365

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	286
KOG0227|consensus	222		100.0
COG5246	222	PRP11 Splicing factor 3a, subunit 2 [RNA processin	100.0
PF09732	125	CactinC_cactus: Cactus-binding C-terminus of cacti	99.63
KOG1924|consensus	1102		99.34
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	98.01
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.66
KOG2370|consensus	623		97.18
KOG4727|consensus	193		96.76
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.32
KOG3671|consensus	569		94.68
KOG3671|consensus	569		94.64
PF06220	38	zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi	94.05
KOG3032|consensus	264		91.48
PLN02748	468	tRNA dimethylallyltransferase	91.25
KOG0132|consensus	894		90.88
KOG1923|consensus	830		89.41
KOG4672|consensus	487		88.95
KOG0132|consensus	894		87.05
KOG1830|consensus	518		85.02
KOG3454|consensus	165		84.2
KOG4722|consensus	672		81.24

>KOG0227|consensus

Probab=100.00  E-value=1.7e-105  Score=708.08  Aligned_cols=217  Identities=78%  Similarity=1.285  Sum_probs=211.9

Q ss_pred             CCCCCCCCCCCCCCcccChhhhhHHHHHHHHHHhhhhcCCCCCccccccCCCceeeecccccccCccchhhhccchHHHH
Q psy1344           1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQA   80 (286)
Q Consensus         1 mdyqnr~GsK~G~Gg~as~s~~n~~Rrerlr~La~e~idl~kDPY~~kNH~G~y~C~LC~t~h~~e~sy~~H~qGkkH~~   80 (286)
                      ||||||+|||+|||||||+||+|+|||||||+||||||||.+||||||||+|+|+|+||+|+|+||+||++||||||||+
T Consensus         1 md~~~r~GsK~G~ggvAS~se~n~~RrerlrqLaletidl~kDPy~mkNh~G~yeCkLClT~H~ne~Syl~HtqGKKHq~   80 (222)
T KOG0227|consen    1 MDYQNRAGSKTGSGGVASESEFNRDRRERLRQLALETIDLNKDPYFMKNHLGKYECKLCLTLHNNEGSYLAHTQGKKHQT   80 (222)
T ss_pred             CCcccccCccCCCCcccchhhhhHHHHHHHHHHHHhhcccccCchhhhccCcceeehhhhhhhcchhhhhhhhccchhhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCcCCccceeccCCCceeeeecCCCCCcceeEEEEeCCCccCCCccceeeccccccccC
Q psy1344          81 NLARRAAKEAKDAPQQPAPEKPRVEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIE  160 (286)
Q Consensus        81 nL~rR~~~e~~~~~~~~~~~~~~v~~r~~vKiGrPgykvtK~rDpet~q~gllfqIdypei~d~~~P~~R~mS~~EqrvE  160 (286)
                      ||+|||++|++++....++.+..|++|++||||||||||||+||++.||+||+|||||++|+++++|+|||||+|||++|
T Consensus        81 Nlarraa~e~k~s~~~~~~~k~~v~vk~~vkigrpgykvtk~r~~~~gq~~L~fQv~Yp~i~~~~~Pr~rfmssyeq~ve  160 (222)
T KOG0227|consen   81 NLARRAAKEAKESPDLPQPQKIIVEVKKFVKIGRPGYKVTKQRDPENGQQGLLFQVNYPEIEEGIMPRHRFMSSYEQKVE  160 (222)
T ss_pred             HHHHHHHHHhhcCccccccccchhhhhhhhhcCCCcceeeeeecCccCceeeEEEecchhhhhccCCcchhhhhhHhhcC
Confidence            99999999999988666677778899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccceEEeecCccccccccCCCcccccCCCcceeeccCCCceEEEEEEeecCCC
Q psy1344         161 PPDRKWQYLLFAAEPYETIAFKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNESK  217 (286)
Q Consensus       161 ~~dkk~qYLliAaEPYEtIafkiPn~eId~~~~~~~t~WD~d~k~f~lQ~~fk~~~~  217 (286)
                      ++|++||||||||||||||||||||+|||++++|||||||.+||+|||||||+....
T Consensus       161 ~~dk~~qyLvfaaePyE~Iafk~p~~Eid~se~Kf~t~wd~~tk~y~lqF~fk~~~~  217 (222)
T KOG0227|consen  161 PPDKSWQYLVFAAEPYENIAFKVPSREIDKSEGKFWTHWDAETKQYTLQFFFKQAEP  217 (222)
T ss_pred             CccccceEEEEEeccccceeeecCchhhhhccCceeeeecCCCceEEEEEEecccCc
Confidence            999999999999999999999999999999999999999999999999999998764

>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=100.00  E-value=1.7e-76  Score=521.18  Aligned_cols=214  Identities=39%  Similarity=0.663  Sum_probs=194.0

Q ss_pred             CCCCCCCCCCCCCCcccChhhhhHHHHHHHHHHhhhhcCCCCCccccccCCCceeeecccccccCccchhhhccchHHHH
Q psy1344           1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQA   80 (286)
Q Consensus         1 mdyqnr~GsK~G~Gg~as~s~~n~~Rrerlr~La~e~idl~kDPY~~kNH~G~y~C~LC~t~h~~e~sy~~H~qGkkH~~   80 (286)
                      ||||+|+|||+|+||+||.++.|.+||+|++.|+++++||.+|||+||||+|.|+|+||+|+|.+|+||++|++||||++
T Consensus         1 Mny~~r~Gsk~Gggg~Ase~~~n~~rR~r~~~L~~~gqDl~dDPyl~knh~Gk~vC~LC~T~H~~e~Sy~~H~~GKKH~~   80 (222)
T COG5246           1 MNYGGRGGSKTGGGGTASEIKKNKKRRSRQLLLEAYGQDLMDDPYLSKNHTGKYVCLLCKTKHLTEMSYVKHREGKKHKE   80 (222)
T ss_pred             CCcccccccccCCCcchhHHHhhHHHHHHHHHHHhcCcccccCcchhhcCCCcEEeeeeccccccHHHHHHhhccchhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCC-CCC----CCCCCcCCccc-eeccCCCceeeeecCCCCCcceeEEEEeCCCccCCCccceeeccc
Q psy1344          81 NLARRAAKEAKDAPQ-QPA----PEKPRVEPKKF-VKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSA  154 (286)
Q Consensus        81 nL~rR~~~e~~~~~~-~~~----~~~~~v~~r~~-vKiGrPgykvtK~rDpet~q~gllfqIdypei~d~~~P~~R~mS~  154 (286)
                      |++||.+.+.+-+.. |.+    .++.-|+.|+. +++|+|+|||.+++.|+.|..||.|||+|+++....+|++||||+
T Consensus        81 n~~rrs~eksslgrEnqtthdfrqqQkiieaKqSlk~~GiP~ykv~~~~epk~G~~Gl~iqvnY~Dd~a~~~P~yRivs~  160 (222)
T COG5246          81 NSSRRSEEKSSLGRENQTTHDFRQQQKIIEAKQSLKRSGIPSYKVRSLVEPKGGRRGLGIQVNYEDDLAEEMPQYRIVSS  160 (222)
T ss_pred             hHHHHHHHhhcccccCCchhhhhhHHHHHHHHHHHHhcCCCceeEEEeecCCCCceeeEEEEeccchhhccCcceehhhh
Confidence            999996554443221 111    11333566544 477999999999999999999999999999988889999999999


Q ss_pred             cccccCCCCcccceEEeecCccccccccCCCcccccCCCcceeeccCCCceEEEEEEeecCC
Q psy1344         155 YEQRIEPPDRKWQYLLFAAEPYETIAFKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNES  216 (286)
Q Consensus       155 ~EqrvE~~dkk~qYLliAaEPYEtIafkiPn~eId~~~~~~~t~WD~d~k~f~lQ~~fk~~~  216 (286)
                      |||++|+.|++|+||||||||||||||||++.|||..+  .|++||..|++|+|||||+...
T Consensus       161 lEq~ve~~d~~f~yLV~a~ePyEnIafk~~~~ei~f~s--~~~~wDa~~~tYt~qFff~~a~  220 (222)
T COG5246         161 LEQNVEEYDESFRYLVFACEPYENIAFKFENKEIDFLS--IYEDWDAETGTYTLQFFFLEAG  220 (222)
T ss_pred             hhhcchhhcccceEEEEEeccccceeeecCCCccchhh--hcccccccCceEEEEEeeeccc
Confidence            99999999999999999999999999999999999876  7889999999999999998653

>PF09732 CactinC_cactus: Cactus-binding C-terminus of cactin protein; InterPro: IPR019134 This entry represents the C-terminal 200 residues of the cactin protein which is necessary for the association of cactin with IkappaB-cactus, as one of the intracellular members of the Rel complex

Probab=99.63  E-value=6.7e-16  Score=129.70  Aligned_cols=83  Identities=33%  Similarity=0.528  Sum_probs=72.3

Q ss_pred             CCCCcceeEEEEeCCCccC-CCccceeeccccccccCCCCcccceEEe-ecCccccccccCCCcccccCCC-cceeeccC
Q psy1344         125 PSNGQQSLLFQVDYPEIAD-DVFPRHRFMSAYEQRIEPPDRKWQYLLF-AAEPYETIAFKVPSREVDKGDT-KFWTHWNK  201 (286)
Q Consensus       125 pet~q~gllfqIdypei~d-~~~P~~R~mS~~EqrvE~~dkk~qYLli-AaEPYEtIafkiPn~eId~~~~-~~~t~WD~  201 (286)
                      |-.-.+|+.|+|.||+|+| +..|++|||+     +++ ++.+++|+| |++|||.|||||+|+|+|.+.+ .|++.||.
T Consensus        36 PPK~vqGYkFnIfYPdL~d~~~~P~y~i~~-----~~~-~~~~~~L~F~AgpPYeDIAFkIvnrEWd~s~k~Gfr~~Fd~  109 (125)
T PF09732_consen   36 PPKIVQGYKFNIFYPDLIDKSKTPRYRIEP-----DED-NPDFCILRFHAGPPYEDIAFKIVNREWDYSHKRGFRCSFDR  109 (125)
T ss_pred             CCceeeeeEEEEECCcccCCCCCCcEEEEE-----CCC-CCCEEEEEEeCCCCCcCEEEEEecCeeecCCCCCceEEeeC
Confidence            3445789999999999987 7789999988     333 889999999 5689999999999999999988 78999975


Q ss_pred             CCceEEEEEEeecC
Q psy1344         202 DTKQFFLQFSFRNE  215 (286)
Q Consensus       202 d~k~f~lQ~~fk~~  215 (286)
                        ++|.|+|+||..
T Consensus       110 --gilqL~F~FKr~  121 (125)
T PF09732_consen  110 --GILQLYFNFKRY  121 (125)
T ss_pred             --CEEEEEEEEEhh
Confidence              799999999964

The Rel (NF-kappaB) pathway is conserved in invertebrates and vertebrates. In mammals, it controls the activities of the immune and inflammatory response genes as well as viral genes, and is critical for cell growth and survival. In Drosophila, the Rel pathway functions in the innate cellular and humoral immune response, in muscle development and in the establishment of dorsal-ventral polarity in the early embryo []. Most members of the family also have the conserved mid region of cactin (IPR018816 from INTERPRO) further upstream.

>KOG1924|consensus

Probab=99.34  E-value=1e-13  Score=143.39  Aligned_cols=51  Identities=18%  Similarity=0.238  Sum_probs=44.1

Q ss_pred             eEEEEeCCCccCCCccceeeccccccccCCCCcccceEEeecCccccccccC
Q psy1344         132 LLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKV  183 (286)
Q Consensus       132 llfqIdypei~d~~~P~~R~mS~~EqrvE~~dkk~qYLliAaEPYEtIafki  183 (286)
                      .+|+||..+|+|.++++.+. .+.||++++..++|.-++.|+++.+...-|.
T Consensus       450 ~~l~id~~~liD~~vdkak~-eeseqkA~e~~kk~~ke~ta~qe~qael~k~  500 (1102)
T KOG1924|consen  450 FRLDIDLTELIDKMVDKAKA-EESEQKAAELEKKFDKELTARQEAQAELQKH  500 (1102)
T ss_pred             hcccCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            35688999999999999987 8999999999999999999999987765443

>smart00451 ZnF_U1 U1-like zinc finger

Probab=98.01  E-value=2.4e-06  Score=55.45  Aligned_cols=34  Identities=41%  Similarity=0.692  Sum_probs=31.5

Q ss_pred             CCceeeecccccccCccchhhhccchHHHHHHHH
Q psy1344          51 LGSYECKLCLTLHNNEGSYLAHTQGKKHQANLAR   84 (286)
Q Consensus        51 ~G~y~C~LC~t~h~~e~sy~~H~qGkkH~~nL~r   84 (286)
                      .|.|.|.||++..++..++..|+.||+|+.+|++
T Consensus         1 ~~~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~   34 (35)
T smart00451        1 TGGFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK   34 (35)
T ss_pred             CcCeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence            3679999999999999999999999999999875

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.66  E-value=1.4e-05  Score=48.53  Aligned_cols=25  Identities=32%  Similarity=0.643  Sum_probs=24.4

Q ss_pred             eeeecccccccCccchhhhccchHH
Q psy1344          54 YECKLCLTLHNNEGSYLAHTQGKKH   78 (286)
Q Consensus        54 y~C~LC~t~h~~e~sy~~H~qGkkH   78 (286)
                      |.|.+|++..+++.+|.+|++|++|
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSKKH   25 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence            7899999999999999999999998

>KOG2370|consensus

Probab=97.18  E-value=0.00026  Score=71.47  Aligned_cols=74  Identities=28%  Similarity=0.457  Sum_probs=55.9

Q ss_pred             ceeEEEEeCCCccC-CCccceeeccccccccCCCCcccceEE---eecCccccccccCCCcccccCC--CcceeeccCCC
Q psy1344         130 QSLLFQVDYPEIAD-DVFPRHRFMSAYEQRIEPPDRKWQYLL---FAAEPYETIAFKVPSREVDKGD--TKFWTHWNKDT  203 (286)
Q Consensus       130 ~gllfqIdypei~d-~~~P~~R~mS~~EqrvE~~dkk~qYLl---iAaEPYEtIafkiPn~eId~~~--~~~~t~WD~d~  203 (286)
                      +|..|.|-||.|+| +..|.++|-+ .+.       +-++.+   .|..|||.|||+|=|+|-+.+-  |..|+|   +.
T Consensus       539 QGYkFNIFYPDLidk~~aP~y~ie~-~~d-------~~d~ciIRF~aGpPYeDIAFkIVnkeWeyshKrGfKcqF---~n  607 (623)
T KOG2370|consen  539 QGYKFNIFYPDLIDKGRAPTYRIER-CRD-------KNDFCIIRFHAGPPYEDIAFKIVNKEWEYSHKRGFKCQF---DN  607 (623)
T ss_pred             cceeecccchhhhccccCCeeeeee-cCC-------CCceEEEEeccCCcchhhhhhhhcchhhhhhhcCcccee---eC
Confidence            89999999999877 6789999822 221       113444   4999999999999999987653  444554   57


Q ss_pred             ceEEEEEEeec
Q psy1344         204 KQFFLQFSFRN  214 (286)
Q Consensus       204 k~f~lQ~~fk~  214 (286)
                      ++|.|.|.||.
T Consensus       608 gvlqL~F~FKk  618 (623)
T KOG2370|consen  608 GVLQLWFRFKK  618 (623)
T ss_pred             Ceeeeeehhhh
Confidence            88999999984

>KOG4727|consensus

Probab=96.76  E-value=0.00063  Score=60.89  Aligned_cols=39  Identities=33%  Similarity=0.624  Sum_probs=34.5

Q ss_pred             ccccCCCceeeecccccccCccchhhhccchHHHHHHHH
Q psy1344          46 FMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQANLAR   84 (286)
Q Consensus        46 ~~kNH~G~y~C~LC~t~h~~e~sy~~H~qGkkH~~nL~r   84 (286)
                      +-+-..|+|-|.+|+.+.-.-.+||-|+.||+||.||--
T Consensus        68 tp~sq~~GyyCdVCdcvvKDSinflDHiNgKkHqrnlgm  106 (193)
T KOG4727|consen   68 TPRSQKGGYYCDVCDCVVKDSINFLDHINGKKHQRNLGM  106 (193)
T ss_pred             CcccccCceeeeecceeehhhHHHHHHhccHHHHHHHhh
Confidence            335567889999999999999999999999999999864

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.32  E-value=0.0016  Score=40.61  Aligned_cols=27  Identities=26%  Similarity=0.566  Sum_probs=25.1

Q ss_pred             ceeeecccccccCccchhhhccchHHH
Q psy1344          53 SYECKLCLTLHNNEGSYLAHTQGKKHQ   79 (286)
Q Consensus        53 ~y~C~LC~t~h~~e~sy~~H~qGkkH~   79 (286)
                      .|.|.+|+....++..+..|+.||+|+
T Consensus         1 q~~C~~C~k~f~~~~~~~~H~~sk~Hk   27 (27)
T PF12171_consen    1 QFYCDACDKYFSSENQLKQHMKSKKHK   27 (27)
T ss_dssp             -CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred             CCCcccCCCCcCCHHHHHHHHccCCCC
Confidence            478999999999999999999999996

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG3671|consensus

Probab=94.68  E-value=0.092  Score=53.79  Aligned_cols=14  Identities=21%  Similarity=0.176  Sum_probs=6.9

Q ss_pred             hhhHHHHHHHHHHh
Q psy1344          21 ESNRDRRERLRQLA   34 (286)
Q Consensus        21 ~~n~~Rrerlr~La   34 (286)
                      +.|-+-.|.|++|+
T Consensus        20 lLt~~ene~lf~~l   33 (569)
T KOG3671|consen   20 LLTSEENETLFKLL   33 (569)
T ss_pred             ccchhHHHHHHHHh
Confidence            34444455555553

>KOG3671|consensus

Probab=94.64  E-value=0.085  Score=54.05  Aligned_cols=30  Identities=20%  Similarity=0.211  Sum_probs=14.0

Q ss_pred             ceeeecccccccCccchhhhccchHHHHHHHHHH
Q psy1344          53 SYECKLCLTLHNNEGSYLAHTQGKKHQANLARRA   86 (286)
Q Consensus        53 ~y~C~LC~t~h~~e~sy~~H~qGkkH~~nL~rR~   86 (286)
                      .||-.-|..-.|--..+.+    .+....|.+|.
T Consensus       110 tFegddc~aGLnF~~E~EA----~~F~k~V~~r~  139 (569)
T KOG3671|consen  110 TFEGDDCQAGLNFASEEEA----QKFRKKVQDRI  139 (569)
T ss_pred             eeccccceeeecccCHHHH----HHHHHHHHHHh
Confidence            3555555544444444433    34444455544

>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.05  E-value=0.037  Score=37.83  Aligned_cols=33  Identities=27%  Similarity=0.533  Sum_probs=19.6

Q ss_pred             ceeeecccccccCcc--chhhhccchHHHHHHHHH
Q psy1344          53 SYECKLCLTLHNNEG--SYLAHTQGKKHQANLARR   85 (286)
Q Consensus        53 ~y~C~LC~t~h~~e~--sy~~H~qGkkH~~nL~rR   85 (286)
                      +|-|..|.+..++..  +-..|..|.+|+.|+++.
T Consensus         3 ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~~   37 (38)
T PF06220_consen    3 RYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKRY   37 (38)
T ss_dssp             S-B-TTT--B-S--SHHHHHHHT--THHHHHHHHH
T ss_pred             CeecccccceecCCChHHHHHhhccHHHHHHHHHh
Confidence            688999999985554  448899999999998763

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.

>KOG3032|consensus

Probab=91.48  E-value=0.22  Score=46.87  Aligned_cols=51  Identities=20%  Similarity=0.309  Sum_probs=40.5

Q ss_pred             hhhhcCCCCCcccc-ccCCCceeeecccccccCccchhhhccchHHHHHHHHH
Q psy1344          34 ALETIDLNKDPYFM-KNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQANLARR   85 (286)
Q Consensus        34 a~e~idl~kDPY~~-kNH~G~y~C~LC~t~h~~e~sy~~H~qGkkH~~nL~rR   85 (286)
                      -+.+-|+.-|+-|- -|-+|...|.+|++--- +.-...|..||+|..++..-
T Consensus        15 ~~kk~~~ri~splakyn~sgql~C~vCn~piK-p~lW~vHvnsKkHre~id~l   66 (264)
T KOG3032|consen   15 NAKKKDTRIDSPLAKYNESGQLVCRVCNVPIK-PSLWDVHVNSKKHREAIDSL   66 (264)
T ss_pred             hccCcccccccHhhccCCCCCeeEEEecCccc-HHHHHHHhccHHHHHHHHHH
Confidence            44455655554444 48899999999999988 89999999999999988764

>PLN02748 tRNA dimethylallyltransferase

Probab=91.25  E-value=0.12  Score=52.41  Aligned_cols=34  Identities=24%  Similarity=0.528  Sum_probs=31.1

Q ss_pred             ceeeecccc-cccCccchhhhccchHHHHHHHHHH
Q psy1344          53 SYECKLCLT-LHNNEGSYLAHTQGKKHQANLARRA   86 (286)
Q Consensus        53 ~y~C~LC~t-~h~~e~sy~~H~qGkkH~~nL~rR~   86 (286)
                      .|.|.+|.. +.+.+.....|++|++|+.+|++..
T Consensus       418 ~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~~~  452 (468)
T PLN02748        418 QYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQRLK  452 (468)
T ss_pred             cccccCCCCcccCCHHHHHHHhcchHHHHHHhHHH
Confidence            589999998 8999999999999999999998764

>KOG0132|consensus

Probab=90.88  E-value=0.72  Score=49.66  Aligned_cols=14  Identities=7%  Similarity=0.444  Sum_probs=8.0

Q ss_pred             ceeeccCCCceEEE
Q psy1344         195 FWTHWNKDTKQFFL  208 (286)
Q Consensus       195 ~~t~WD~d~k~f~l  208 (286)
                      |+.|||.++++-|+
T Consensus       501 ~k~~wD~~lGVt~I  514 (894)
T KOG0132|consen  501 YKDYWDVELGVTYI  514 (894)
T ss_pred             hhhhhhcccCeeEe
Confidence            55666666555443

>KOG1923|consensus

Probab=89.41  E-value=1.4  Score=47.41  Aligned_cols=26  Identities=12%  Similarity=0.133  Sum_probs=17.4

Q ss_pred             ccccccCccchhhhccchHHHHHHHH
Q psy1344          59 CLTLHNNEGSYLAHTQGKKHQANLAR   84 (286)
Q Consensus        59 C~t~h~~e~sy~~H~qGkkH~~nL~r   84 (286)
                      -..+|.-.++|..|+|=+--+.-|..
T Consensus        99 ~ifv~v~d~n~rvhlQye~t~lgld~  124 (830)
T KOG1923|consen   99 DVFVGVPDENFRVHLQYEATHLGLDK  124 (830)
T ss_pred             HHHhcchhhhhHHHhhhHHHHHhhhh
Confidence            34567778899999876655544443

>KOG4672|consensus

Probab=88.95  E-value=1.4  Score=44.63  Aligned_cols=7  Identities=43%  Similarity=0.738  Sum_probs=2.9

Q ss_pred             HHHHHHH
Q psy1344          80 ANLARRA   86 (286)
Q Consensus        80 ~nL~rR~   86 (286)
                      ..|.||.
T Consensus       106 ~~L~r~e  112 (487)
T KOG4672|consen  106 SHLQRRE  112 (487)
T ss_pred             HHHHHHh
Confidence            3344443

>KOG0132|consensus

Probab=87.05  E-value=2  Score=46.45  Aligned_cols=23  Identities=43%  Similarity=0.954  Sum_probs=11.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCC
Q psy1344         235 PPPPMLPPPPPPQMMGPPPPPPG  257 (286)
Q Consensus       235 ~pp~~~~pPPpPp~~~~~PPPPP  257 (286)
                      +||++.+.+|+|+++.+-+|.++
T Consensus       612 ppPgf~PnpPpP~~~Pg~np~~p  634 (894)
T KOG0132|consen  612 PPPGFVPNPPPPPLRPGYNPYPP  634 (894)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCC
Confidence            55665444444455444443333

>KOG1830|consensus

Probab=85.02  E-value=2.8  Score=42.67  Aligned_cols=19  Identities=16%  Similarity=0.142  Sum_probs=8.6

Q ss_pred             ccchhhhccchHHHHHHHH
Q psy1344          66 EGSYLAHTQGKKHQANLAR   84 (286)
Q Consensus        66 e~sy~~H~qGkkH~~nL~r   84 (286)
                      .-||-=-+|-+|-..-.++
T Consensus       153 dPsyFFDLWKekmLqdted  171 (518)
T KOG1830|consen  153 DPSYFFDLWKEKMLQDTED  171 (518)
T ss_pred             CcHHHHHHHHHHHHHHHHH
Confidence            3445444554444444333

>KOG3454|consensus

Probab=84.20  E-value=0.45  Score=42.40  Aligned_cols=32  Identities=28%  Similarity=0.512  Sum_probs=26.4

Q ss_pred             ceeeecccccccC--ccchhhhccchHHHHHHHH
Q psy1344          53 SYECKLCLTLHNN--EGSYLAHTQGKKHQANLAR   84 (286)
Q Consensus        53 ~y~C~LC~t~h~~--e~sy~~H~qGkkH~~nL~r   84 (286)
                      +|-|.-|.|..++  .+.=..|..|+||..|.+.
T Consensus         3 RYyCDYCdt~LthDslsvRK~H~~GrkH~~nvk~   36 (165)
T KOG3454|consen    3 RYYCDYCDTYLTHDSLSVRKTHCGGRKHKDNVKD   36 (165)
T ss_pred             cchhhhhhhhhhcccHHHHHhhhhhHHHHHHHHH
Confidence            6999999976555  4566679999999999887

>KOG4722|consensus

Probab=81.24  E-value=0.66  Score=47.25  Aligned_cols=33  Identities=33%  Similarity=0.583  Sum_probs=29.6

Q ss_pred             eeeecccccccCccchhhhccchHHHHHHHHHH
Q psy1344          54 YECKLCLTLHNNEGSYLAHTQGKKHQANLARRA   86 (286)
Q Consensus        54 y~C~LC~t~h~~e~sy~~H~qGkkH~~nL~rR~   86 (286)
                      -.|.||+++-.++--+-+|.-|+|||..|..-.
T Consensus       494 kqcslcnvlissevylfshvkgrkhqqal~e~~  526 (672)
T KOG4722|consen  494 KQCSLCNVLISSEVYLFSHVKGRKHQQALNELL  526 (672)
T ss_pred             hccchhhhhhhhhhhhhhhhcchhHHHHHHHHh
Confidence            479999999999999999999999999887653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	286
4dgw_C	231	PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A	5e-51
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	7e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	7e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	9e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	7e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	7e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	7e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	7e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	9e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	1e-04
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	1e-04
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	1e-04
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-04
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	4e-04
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	4e-04
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	5e-04
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	6e-04
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	6e-04
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	6e-04

>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces cerevisiae} Length = 231

 Score =  166 bits (422), Expect = 5e-51
 Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 25/114 (21%)

Query: 128 GQQSLLFQVDYPEIA----------DDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYE 177
           G   +  QV+Y                V P  R +S  E        K ++L+ A EP+E
Sbjct: 114 GSVGMAIQVNYSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGK-KFLVIAYEPFE 172

Query: 178 TIAFKVPSREVDKGDTKF--------------WTHWNKDTKQFFLQFSFRNESK 217
            IA ++P  E+   +                  T W+  +K +++QF F+   +
Sbjct: 173 NIAIELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAISKLYYVQFFFKQAEQ 226

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 49.4 bits (117), Expect = 7e-07
 Identities = 13/69 (18%), Positives = 15/69 (21%)

Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
           P+   PP    A   +     M P    P M       P               M     
Sbjct: 26  PAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHL 85

Query: 278 MPPPPPPPN 286
              P   PN
Sbjct: 86  HNVPLVDPN 94

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 49.4 bits (117), Expect = 7e-07
 Identities = 11/69 (15%), Positives = 13/69 (18%)

Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
           PS       +PA                   +   P         P  P  MG       
Sbjct: 54  PSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQ 113

Query: 278 MPPPPPPPN 286
            P   P   
Sbjct: 114 QPMAAPAYG 122

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 49.1 bits (116), Expect = 9e-07
 Identities = 8/64 (12%), Positives = 11/64 (17%)

Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
                    +   P  P        QM  PP       G      P    +   +     
Sbjct: 19  NATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATT 78

Query: 282 PPPP 285
               
Sbjct: 79  SMND 82

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 49.1 bits (116), Expect = 1e-06
 Identities = 10/65 (15%), Positives = 14/65 (21%)

Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
             P+ +      +  PP    P   Q     P    L   +      M  M         
Sbjct: 33  QDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVD 92

Query: 282 PPPPN 286
           P    
Sbjct: 93  PNAYM 97

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 47.1 bits (111), Expect = 3e-06
 Identities = 8/65 (12%), Positives = 12/65 (18%)

Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
           PP    P++       P                      N+P   P+             
Sbjct: 48  PPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGT 107

Query: 282 PPPPN 286
           P    
Sbjct: 108 PLQQQ 112

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 46.7 bits (110), Expect = 5e-06
 Identities = 8/69 (11%), Positives = 13/69 (18%)

Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
              +  P   PA          +PP      MG           +             + 
Sbjct: 25  QPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMH 84

Query: 278 MPPPPPPPN 286
           +   P    
Sbjct: 85  LHNVPLVDP 93

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 46.4 bits (109), Expect = 7e-06
 Identities = 8/77 (10%), Positives = 15/77 (19%)

Query: 209 QFSFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPH 268
           Q  +   + P  +P     P               PP   +        L          
Sbjct: 13  QLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQ 72

Query: 269 MGGMAPTLAMPPPPPPP 285
           +     ++        P
Sbjct: 73  IDQATTSMNDMHLHNVP 89

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 45.6 bits (107), Expect = 1e-05
 Identities = 7/69 (10%), Positives = 13/69 (18%)

Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
                PP  +                   Q+         +  +  P       M P + 
Sbjct: 43  GQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVP 102

Query: 278 MPPPPPPPN 286
           +    P   
Sbjct: 103 VQMGTPLQQ 111

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 45.6 bits (107), Expect = 1e-05
 Identities = 6/69 (8%), Positives = 9/69 (13%)

Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
               P  +     +     P                    L       P         + 
Sbjct: 45  MGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQ 104

Query: 278 MPPPPPPPN 286
           M  P     
Sbjct: 105 MGTPLQQQQ 113

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 45.2 bits (106), Expect = 1e-05
 Identities = 8/64 (12%), Positives = 9/64 (14%)

Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
                       L  P    PP  P   G      G+      P                
Sbjct: 11  QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLH 70

Query: 282 PPPP 285
               
Sbjct: 71  QQID 74

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 45.2 bits (106), Expect = 2e-05
 Identities = 5/68 (7%), Positives = 9/68 (13%)

Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
                     P              P   Q+            +M      +      + 
Sbjct: 39  GMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQ 98

Query: 278 MPPPPPPP 285
              P    
Sbjct: 99  PQVPVQMG 106

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 45.2 bits (106), Expect = 2e-05
 Identities = 9/69 (13%), Positives = 13/69 (18%), Gaps = 1/69 (1%)

Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPP-PPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTL 276
           P+          +      P M       P              +M     H   +    
Sbjct: 35  PAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPN 94

Query: 277 AMPPPPPPP 285
           A   P  P 
Sbjct: 95  AYMQPQVPV 103

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 44.0 bits (103), Expect = 3e-05
 Identities = 6/64 (9%), Positives = 8/64 (12%)

Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
                         P   +PP  P                  P       + P       
Sbjct: 12  AQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQ 71

Query: 282 PPPP 285
               
Sbjct: 72  QIDQ 75

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 43.7 bits (102), Expect = 4e-05
 Identities = 6/65 (9%), Positives = 12/65 (18%)

Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
           P   P+  +    P    +             P  G    + P    +            
Sbjct: 22  PLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMN 81

Query: 282 PPPPN 286
               +
Sbjct: 82  DMHLH 86

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 43.3 bits (101), Expect = 7e-05
 Identities = 8/69 (11%), Positives = 10/69 (14%)

Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
              +                  L   P         P   +    P         AP   
Sbjct: 63  TPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYG 122

Query: 278 MPPPPPPPN 286
            P      N
Sbjct: 123 QPSAAMGQN 131

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 43.3 bits (101), Expect = 7e-05
 Identities = 10/72 (13%), Positives = 10/72 (13%), Gaps = 4/72 (5%)

Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPP----PPPGLFGNMPPPPPHMGGMA 273
           P    P                         M        P       M P  P   G  
Sbjct: 49  PQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTP 108

Query: 274 PTLAMPPPPPPP 285
                 P   P 
Sbjct: 109 LQQQQQPMAAPA 120

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 9/65 (13%), Positives = 14/65 (21%)

Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
                + ++ +       L  P        P            P        P+ AM   
Sbjct: 72  QIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQN 131

Query: 282 PPPPN 286
             P N
Sbjct: 132 MRPMN 136

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 40.2 bits (93), Expect = 7e-04
 Identities = 9/52 (17%), Positives = 12/52 (23%)

Query: 235 PPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPPN 286
               + P           P         P  P   G     + MPP    P+
Sbjct: 4   HKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPS 55

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 39.8 bits (92), Expect = 9e-04
 Identities = 8/52 (15%), Positives = 11/52 (21%)

Query: 235 PPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPPPPPPN 286
           P   +        +  P    P              GM P  A+P       
Sbjct: 10  PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQF 61

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 42.4 bits (99), Expect = 1e-04
 Identities = 11/70 (15%), Positives = 17/70 (24%)

Query: 216 SKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPT 275
           S        S      +++  P           +    PP  +    PPPPP      P 
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 276 LAMPPPPPPP 285
             +       
Sbjct: 63  DTVTGDSVLQ 72

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 11/71 (15%), Positives = 14/71 (19%)

Query: 213 RNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGM 272
           + E +                 PP        P    G    P  + G    P P   G 
Sbjct: 154 QFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGG 213

Query: 273 APTLAMPPPPP 283
            P         
Sbjct: 214 PPPPFPAGQTH 224

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 18/70 (25%), Positives = 22/70 (31%), Gaps = 1/70 (1%)

Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMG-GMAPTL 276
            +     + +         PP    PPPP   G PPP          PP     G+ P  
Sbjct: 150 VAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGR 209

Query: 277 AMPPPPPPPN 286
             P   PPP 
Sbjct: 210 GTPMGMPPPG 219

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 15/65 (23%), Positives = 17/65 (26%)

Query: 221 RPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPP 280
           R    PS  +        +              P     G   PPPP   G  P   M P
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGP 191

Query: 281 PPPPP 285
           PP   
Sbjct: 192 PPGMR 196

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 40.0 bits (93), Expect = 4e-04
 Identities = 16/65 (24%), Positives = 17/65 (26%)

Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
                  A            P   P   G PPPP G     P       GM P +  P  
Sbjct: 145 QGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMG 204

Query: 282 PPPPN 286
            PP  
Sbjct: 205 IPPGR 209

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 39.6 bits (92), Expect = 4e-04
 Identities = 22/69 (31%), Positives = 23/69 (33%)

Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
            +               PPPPM    PPP MMGPPP      G     PP  G       
Sbjct: 158 TASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPP 217

Query: 278 MPPPPPPPN 286
               PPPP 
Sbjct: 218 PGMRPPPPG 226

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 39.6 bits (92), Expect = 5e-04
 Identities = 12/68 (17%), Positives = 15/68 (22%)

Query: 218 PSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLA 277
           P      +             M P                + G     PP  GG  P + 
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG 180

Query: 278 MPPPPPPP 285
              PPP  
Sbjct: 181 RGAPPPGM 188

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 39.6 bits (92), Expect = 6e-04
 Identities = 15/70 (21%), Positives = 18/70 (25%)

Query: 216 SKPSFRPPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPT 275
           S+    P    + A         +   P         PPPP   G  PP           
Sbjct: 138 SQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRP 197

Query: 276 LAMPPPPPPP 285
              PP   PP
Sbjct: 198 PMGPPMGIPP 207

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 39.2 bits (91), Expect = 6e-04
 Identities = 14/64 (21%), Positives = 15/64 (23%)

Query: 222 PPPSPSPAIRNNLPPPPMLPPPPPPQMMGPPPPPPGLFGNMPPPPPHMGGMAPTLAMPPP 281
           P   P P     L  P      P  Q+M P                  G           
Sbjct: 115 PAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGG 174

Query: 282 PPPP 285
           PPPP
Sbjct: 175 PPPP 178

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4 Length = 127

 Score = 38.0 bits (87), Expect = 6e-04
 Identities = 14/69 (20%), Positives = 23/69 (33%)

Query: 39  DLNKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPA 98
            +N       +     +CK+C  +  +E   LAH Q +KH   + R  A    +      
Sbjct: 18  AVNSLIRENSHIFSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAK 77

Query: 99  PEKPRVEPK 107
             K      
Sbjct: 78  KFKAAPAEI 86

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	286
4dgw_C	231	PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A	100.0
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	97.06
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.68
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	95.69
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	94.73
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	93.53
2v8f_C	26	MDIA1, profilin IIA; alternative splicing, protein	92.6
2v8f_C	26	MDIA1, profilin IIA; alternative splicing, protein	89.51
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	86.25
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	82.2
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	81.23

>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.6e-46  Score=330.66  Aligned_cols=106  Identities=24%  Similarity=0.418  Sum_probs=96.3

Q ss_pred             ceeccCCCceeeeecCCCCCcceeEEEEeCCC-c---------cCCCccceeeccccccccCCCCcccceEEeecCcccc
Q psy1344         109 FVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPE-I---------ADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYET  178 (286)
Q Consensus       109 ~vKiGrPgykvtK~rDpet~q~gllfqIdype-i---------~d~~~P~~R~mS~~EqrvE~~dkk~qYLliAaEPYEt  178 (286)
                      ...||||||||||+|||+|+|+||+|||+|++ |         .+++.|+|||||+|||++|++ ++|||||||||||||
T Consensus        95 ~~~IGRPGYKVTKVRDPETgQ~GLLFQVdYPEeIk~~~~~~~~~egi~PrhRIMSAyEQrVE~P-Kd~QYLVIAAEPYET  173 (231)
T 4dgw_C           95 XXXXXXXXXXXXXXXXXXXGSVGMAIQVNYSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQ-KGKKFLVIAYEPFEN  173 (231)
T ss_dssp             SCCCCCCCCBCCCEECCBCCBCCEEEEEECCCSSSTTSCCSCSSTTCCCEEEEEETTCCSSCCC-CCCEEEEEECSSSCC
T ss_pred             ccccccccccccccccccCCCeeEEEEEECChhhhhcccccccCCCCCcCEEEECHHHhcccCC-CCCEEEEEEeCCCCC
Confidence            45899999999999999999999999999998 6         678999999999999999998 999999999999999


Q ss_pred             ccccCCCcccccCC--------------CcceeeccCCCceEEEEEEeecC
Q psy1344         179 IAFKVPSREVDKGD--------------TKFWTHWNKDTKQFFLQFSFRNE  215 (286)
Q Consensus       179 IafkiPn~eId~~~--------------~~~~t~WD~d~k~f~lQ~~fk~~  215 (286)
                      |||||||+|||+.+              ++||||||+|+|+|+||||||..
T Consensus       174 IAFKIPNrEIDk~e~~~~~~~~~svDElgKfwTyWD~DsK~FyLQffFK~~  224 (231)
T 4dgw_C          174 IAIELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAISKLYYVQFFFKQA  224 (231)
T ss_dssp             BCCEECSSCSSCCSCCSCCCCCCSSCHHHHHTEEEETTTTEEEEC------
T ss_pred             ceeEcCChhhccccccccccccccccccCCEEEEecCCCCEEEEEEEEeeh
Confidence            99999999999988              78999999999999999999943

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=97.06  E-value=0.00018  Score=58.83  Aligned_cols=35  Identities=29%  Similarity=0.286  Sum_probs=32.7

Q ss_pred             CCceeeecccccccCccchhhhccchHHHHHHHHH
Q psy1344          51 LGSYECKLCLTLHNNEGSYLAHTQGKKHQANLARR   85 (286)
Q Consensus        51 ~G~y~C~LC~t~h~~e~sy~~H~qGkkH~~nL~rR   85 (286)
                      .+.|.|.||+...+++..+.+|..||+|..+|+++
T Consensus        91 ~~~~~C~~C~~~f~s~~~~~~H~~gk~H~~~~~~~  125 (127)
T 1zu1_A           91 DRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLR  125 (127)
T ss_dssp             CTTTEETTTTEECSSHHHHHHHHTSHHHHHHHHHH
T ss_pred             CCCeEcCCCCCEeCCHHHHHHHHCCHHHHHHHHHh
Confidence            45799999999999999999999999999999876

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.68  E-value=0.0011  Score=54.08  Aligned_cols=34  Identities=35%  Similarity=0.569  Sum_probs=31.9

Q ss_pred             eeeecccccccCccchhhhccchHHHHHHHHHHH
Q psy1344          54 YECKLCLTLHNNEGSYLAHTQGKKHQANLARRAA   87 (286)
Q Consensus        54 y~C~LC~t~h~~e~sy~~H~qGkkH~~nL~rR~~   87 (286)
                      +.|.+|.+..+++..+.+|.+||+|+.+|++...
T Consensus        33 ~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~   66 (127)
T 1zu1_A           33 TQCKVCSAVLISESQKLAHYQSRKHANKVRRYMA   66 (127)
T ss_dssp             SEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhc
Confidence            8999999999999999999999999999987654

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=95.69  E-value=0.0039  Score=47.96  Aligned_cols=34  Identities=24%  Similarity=0.463  Sum_probs=28.5

Q ss_pred             CceeeecccccccC--ccchhhhccchHHHHHHHHH
Q psy1344          52 GSYECKLCLTLHNN--EGSYLAHTQGKKHQANLARR   85 (286)
Q Consensus        52 G~y~C~LC~t~h~~--e~sy~~H~qGkkH~~nL~rR   85 (286)
                      .+|-|+-|.+..++  ...+..|.+|+||+.|+++-
T Consensus         2 PkYyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~y   37 (77)
T 3cw1_L            2 PKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDY   37 (77)
T ss_pred             CCcccccCCceecCCCHHHHHHHHccHHHHHHHHHH
Confidence            47899999998744  45578999999999999885

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=94.73  E-value=0.013  Score=48.59  Aligned_cols=38  Identities=18%  Similarity=0.316  Sum_probs=33.5

Q ss_pred             ccCCC--ceeeecccccccCccchhhhccchHHHHHHHHH
Q psy1344          48 KNHLG--SYECKLCLTLHNNEGSYLAHTQGKKHQANLARR   85 (286)
Q Consensus        48 kNH~G--~y~C~LC~t~h~~e~sy~~H~qGkkH~~nL~rR   85 (286)
                      -.|.|  .|.|..|.....+.+.+.+|..+|+|..++..-
T Consensus        43 ed~tGekpfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l   82 (124)
T 1zr9_A           43 PDLPGGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQL   82 (124)
T ss_dssp             SSSGGGGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccCCCCcceEcccCcchhCCHHHHHHHHhhhhhhHHHHHh
Confidence            34666  699999999999999999999999999887754

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=93.53  E-value=0.03  Score=54.40  Aligned_cols=39  Identities=23%  Similarity=0.515  Sum_probs=33.8

Q ss_pred             ceeeecccc------cccCccchhhhccchHHHHHHHHHHHHHhh
Q psy1344          53 SYECKLCLT------LHNNEGSYLAHTQGKKHQANLARRAAKEAK   91 (286)
Q Consensus        53 ~y~C~LC~t------~h~~e~sy~~H~qGkkH~~nL~rR~~~e~~   91 (286)
                      .|.|.+|..      +...+.....|+.||+|..+|+++..+.+.
T Consensus       360 ~~~Ce~C~~~~~~~~~~~ge~~W~~H~ksr~Hk~~~~~~~k~~~~  404 (409)
T 3eph_A          360 HYTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRNTRQADF  404 (409)
T ss_dssp             EEEEEEEECTTSCEEEEESHHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred             ceeCCCCCCCCCCcceEEcHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence            489999998      889999999999999999999987655443

>2v8f_C MDIA1, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus}

Probab=92.60  E-value=0.077  Score=32.73  Aligned_cols=13  Identities=38%  Similarity=0.646  Sum_probs=5.3

Q ss_pred             CCCCCCCCCCCCC
Q psy1344         247 QMMGPPPPPPGLF  259 (286)
Q Consensus       247 p~~~~~PPPPP~~  259 (286)
                      |.+.++|||||++
T Consensus         8 Pg~~giPpPpplP   20 (26)
T 2v8f_C            8 PGVASIPPPPPLP   20 (26)
T ss_pred             CCCCCCCCCCCCC
Confidence            3344444444433

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.25  E-value=0.19  Score=29.93  Aligned_cols=27  Identities=19%  Similarity=0.359  Sum_probs=22.7

Q ss_pred             cccCCC--ceeeecccccccCccchhhhc
Q psy1344          47 MKNHLG--SYECKLCLTLHNNEGSYLAHT   73 (286)
Q Consensus        47 ~kNH~G--~y~C~LC~t~h~~e~sy~~H~   73 (286)
                      |+.|.|  .|.|..|........++.+|.
T Consensus         1 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~   29 (37)
T 2elo_A            1 GSSGSSGRSYSCPVCEKSFSEDRLIKSHI   29 (37)
T ss_dssp             CCCCCCCCCCEETTTTEECSSHHHHHHHH
T ss_pred             CCCCCCCCCcCCCCCCCccCCHHHHHHHH
Confidence            467877  499999999999998888874

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.20  E-value=0.38  Score=29.05  Aligned_cols=26  Identities=15%  Similarity=0.201  Sum_probs=22.1

Q ss_pred             cccCCC--ceeeecccccccCccchhhh
Q psy1344          47 MKNHLG--SYECKLCLTLHNNEGSYLAH   72 (286)
Q Consensus        47 ~kNH~G--~y~C~LC~t~h~~e~sy~~H   72 (286)
                      ||.|.|  .|.|..|........++.+|
T Consensus         1 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H   28 (37)
T 2elm_A            1 GSSGSSGHLYYCSQCHYSSITKNCLKRH   28 (37)
T ss_dssp             CCSSSSSCEEECSSSSCEEECHHHHHHH
T ss_pred             CCccCCCcCeECCCCCcccCCHHHHHHH
Confidence            467887  49999999999998888877

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=81.23  E-value=0.43  Score=28.33  Aligned_cols=27  Identities=15%  Similarity=0.390  Sum_probs=22.5

Q ss_pred             cccCCC--ceeeecccccccCccchhhhc
Q psy1344          47 MKNHLG--SYECKLCLTLHNNEGSYLAHT   73 (286)
Q Consensus        47 ~kNH~G--~y~C~LC~t~h~~e~sy~~H~   73 (286)
                      +|.|.|  .|+|..|.........+.+|.
T Consensus         3 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~   31 (37)
T 1p7a_A            3 TRGSTGIKPFQCPDCDRSFSRSDHLALHR   31 (37)
T ss_dssp             SSTTCCSSSBCCTTTCCCBSSHHHHHHHH
T ss_pred             CCcCCCCCCccCCCCCcccCcHHHHHHHH
Confidence            467887  599999999999888888874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	286
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	97.43
d1zu1a1	72	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	96.81
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	95.48
d2vrda1	61	Spliceosomal protein U1C {Human (Homo sapiens) [Ta	93.17
d2ghfa2	36	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	81.26
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	80.11

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=97.43  E-value=2e-05  Score=55.50  Aligned_cols=32  Identities=28%  Similarity=0.342  Sum_probs=30.4

Q ss_pred             eeeecccccccCccchhhhccchHHHHHHHHH
Q psy1344          54 YECKLCLTLHNNEGSYLAHTQGKKHQANLARR   85 (286)
Q Consensus        54 y~C~LC~t~h~~e~sy~~H~qGkkH~~nL~rR   85 (286)
                      .-|.||+.+.++....++|.+||+|..+|+.|
T Consensus        22 k~C~lCn~~Fns~~~AqsHY~GK~H~K~lk~~   53 (55)
T d1zu1a2          22 KCCPVCNMTFSSPVVAESHYIGKTHIKNLRLR   53 (55)
T ss_dssp             TEETTTTEECSSHHHHHHHHTSHHHHHHHHHH
T ss_pred             hhhhhhhcccCCHHHHHHHhhhhHHHHHHHHh
Confidence            46999999999999999999999999999887

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=96.81  E-value=0.00034  Score=51.11  Aligned_cols=49  Identities=29%  Similarity=0.488  Sum_probs=39.6

Q ss_pred             HHHHHHHhhhhcCCCCCccccccCCCceeeecccccccCccchhhhccchHHHHHHHHH
Q psy1344          27 RERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQANLARR   85 (286)
Q Consensus        27 rerlr~La~e~idl~kDPY~~kNH~G~y~C~LC~t~h~~e~sy~~H~qGkkH~~nL~rR   85 (286)
                      ||-|.++-.|.-+|-+|          --|++|+.+..+|+.-++|-+||||..++++=
T Consensus        16 ~e~v~~~iqe~~~lFtd----------~~CkvC~a~L~seSQriaHYeskkHa~kvr~y   64 (72)
T d1zu1a1          16 KDAVNSLIRENSHIFSD----------TQCKVCSAVLISESQKLAHYQSRKHANKVRRY   64 (72)
T ss_dssp             HHHHHHHHHHTTTTBCS----------SEETTTTEECCSHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhcch----------hhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666665566666          46999999999999999999999999999764

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.0023  Score=46.20  Aligned_cols=36  Identities=19%  Similarity=0.304  Sum_probs=33.0

Q ss_pred             CCCceeeecccccccCccchhhhccchHHHHHHHHH
Q psy1344          50 HLGSYECKLCLTLHNNEGSYLAHTQGKKHQANLARR   85 (286)
Q Consensus        50 H~G~y~C~LC~t~h~~e~sy~~H~qGkkH~~nL~rR   85 (286)
                      .+|.|.|-.|.....++..+..|..+|+|..+|++.
T Consensus        12 G~gqfYCv~C~K~F~se~~l~~H~ksKkHKrrvk~L   47 (67)
T d1zr9a1          12 GGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQL   47 (67)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCEEecccccCccCCHHHHHHHHcccHHHHHHHHh
Confidence            468899999999999999999999999999887764

>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Spliceosomal protein U1C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.17  E-value=0.023  Score=40.08  Aligned_cols=35  Identities=26%  Similarity=0.544  Sum_probs=28.8

Q ss_pred             CCceeeecccccccCcc-ch-hhhccchHHHHHHHHH
Q psy1344          51 LGSYECKLCLTLHNNEG-SY-LAHTQGKKHQANLARR   85 (286)
Q Consensus        51 ~G~y~C~LC~t~h~~e~-sy-~~H~qGkkH~~nL~rR   85 (286)
                      +++|-|.-|.+..++.. +. ..|.+|++|+.|.+.-
T Consensus         1 MpryyCdYC~~~lt~ds~s~RK~H~~G~kH~~n~~~y   37 (61)
T d2vrda1           1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDY   37 (61)
T ss_dssp             CCSCEETTTTEECSCCSHHHHHHHTCCTHHHHHHHHH
T ss_pred             CCchhhhhhcchhccCChhHHHHHhccHHHHHHHHHH
Confidence            35799999999988664 43 5799999999998875

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.11  E-value=0.23  Score=30.95  Aligned_cols=27  Identities=15%  Similarity=0.390  Sum_probs=23.9

Q ss_pred             cccCCC--ceeeecccccccCccchhhhc
Q psy1344          47 MKNHLG--SYECKLCLTLHNNEGSYLAHT   73 (286)
Q Consensus        47 ~kNH~G--~y~C~LC~t~h~~e~sy~~H~   73 (286)
                      .|.|+|  -|.|..|...-...+++.+|.
T Consensus         3 ~R~HTgeKPy~C~~C~k~F~~~~~L~~H~   31 (37)
T d1p7aa_           3 TRGSTGIKPFQCPDCDRSFSRSDHLALHR   31 (37)
T ss_dssp             SSTTCCSSSBCCTTTCCCBSSHHHHHHHH
T ss_pred             CCccCCccCeEeCCCCCEecCHHHHHHHH
Confidence            488999  499999999999999998883