Psyllid ID: psy13453
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 764 | 2.2.26 [Sep-21-2011] | |||||||
| P18486 | 510 | Alpha-methyldopa hypersen | yes | N/A | 0.380 | 0.570 | 0.580 | 1e-113 | |
| P14173 | 480 | Aromatic-L-amino-acid dec | yes | N/A | 0.388 | 0.618 | 0.575 | 1e-108 | |
| P05031 | 510 | Aromatic-L-amino-acid dec | no | N/A | 0.405 | 0.607 | 0.578 | 1e-106 | |
| P20711 | 480 | Aromatic-L-amino-acid dec | no | N/A | 0.386 | 0.614 | 0.569 | 1e-106 | |
| O96567 | 510 | Aromatic-L-amino-acid dec | N/A | N/A | 0.405 | 0.607 | 0.578 | 1e-105 | |
| P48861 | 508 | Aromatic-L-amino-acid dec | N/A | N/A | 0.386 | 0.580 | 0.565 | 1e-105 | |
| O88533 | 480 | Aromatic-L-amino-acid dec | yes | N/A | 0.388 | 0.618 | 0.568 | 1e-103 | |
| P22781 | 480 | Aromatic-L-amino-acid dec | yes | N/A | 0.386 | 0.614 | 0.556 | 1e-103 | |
| P27718 | 487 | Aromatic-L-amino-acid dec | yes | N/A | 0.386 | 0.605 | 0.572 | 1e-102 | |
| P80041 | 486 | Aromatic-L-amino-acid dec | yes | N/A | 0.386 | 0.606 | 0.559 | 1e-101 |
| >sp|P18486|L2AM_DROME Alpha-methyldopa hypersensitive protein OS=Drosophila melanogaster GN=amd PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 410 bits (1053), Expect = e-113, Method: Compositional matrix adjust.
Identities = 181/312 (58%), Positives = 248/312 (79%)
Query: 453 EEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTV 512
+EFREFGKAAID+IADY++NIR+ VLP+VEPGYL L+P EMPEE E W+ ++ D++ V
Sbjct: 4 KEFREFGKAAIDYIADYLENIRDDDVLPNVEPGYLLDLLPTEMPEEPEAWKDVLGDISRV 63
Query: 513 IMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLG 572
I PG+THWQSP +AY+PT +SYPSIVG+ML+ FG+IGFSW+ SPACTELEV+VM+WL
Sbjct: 64 IKPGLTHWQSPHMHAYYPTSTSYPSIVGEMLASGFGVIGFSWICSPACTELEVVVMDWLA 123
Query: 573 KALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKL 632
K L LP F + S GPGGG+IQ +ASEA LV++L A+ + + +++ +P L+E+++R +L
Sbjct: 124 KFLKLPAHFQHASDGPGGGVIQGSASEAVLVAVLAAREQAVANYRESHPELSESEVRGRL 183
Query: 633 VAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATL 692
VAY+SDQSNS +EK+ ++ +P+R L + ++ VLRGD L A++ED+A G IP +ATL
Sbjct: 184 VAYSSDQSNSCIEKAGVLAAMPIRLLPAGEDFVLRGDTLRGAIEEDVAAGRIPVICVATL 243
Query: 693 GTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHK 752
GTTGTCA+D++E L +C+E+ +WLHVDAAYAG A L E + L++GL+ VDS +FN HK
Sbjct: 244 GTTGTCAYDDIESLSAVCEEFKVWLHVDAAYAGGAFALEECSDLRKGLDRVDSLNFNLHK 303
Query: 753 WLLVNFDCSAMW 764
++LVNFDCSAMW
Sbjct: 304 FMLVNFDCSAMW 315
|
Participates in catecholamine metabolism. It plays a vital role in cuticle development. Drosophila melanogaster (taxid: 7227) EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|P14173|DDC_RAT Aromatic-L-amino-acid decarboxylase OS=Rattus norvegicus GN=Ddc PE=1 SV=1 | Back alignment and function description |
|---|
Score = 393 bits (1009), Expect = e-108, Method: Compositional matrix adjust.
Identities = 180/313 (57%), Positives = 232/313 (74%)
Query: 452 NEEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNT 511
+ EFR GK +D+IADY+D I RPV P VEPGYL +L+P P+E E + I+RD+
Sbjct: 3 SREFRRRGKEMVDYIADYLDGIEGRPVYPDVEPGYLRALIPTTAPQEPETYEDIIRDIEK 62
Query: 512 VIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWL 571
+IMPG+THW SP F AYFPT SSYP+++ DML GA G IGFSW +SPACTELE ++M+WL
Sbjct: 63 IIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWL 122
Query: 572 GKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631
GK L LPE FL G GGG+IQ +ASEATLV++L A+ KMI Q+ +P LT+ + K
Sbjct: 123 GKMLELPEAFLAGRAGEGGGVIQGSASEATLVALLAARTKMIRQLQAASPELTQAALMEK 182
Query: 632 LVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIAT 691
LVAYTSDQ++SSVE++ +IG V ++ + SD N +R AL A++ D A GLIP ++ T
Sbjct: 183 LVAYTSDQAHSSVERAGLIGGVKIKAIPSDGNYSMRAAALREALERDKAAGLIPFFVVVT 242
Query: 692 LGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTH 751
LGTT C+FDNL E+GPIC + +WLH+DAAYAGSA + PE+ +L G+E+ DSF+FN H
Sbjct: 243 LGTTSCCSFDNLLEVGPICNQEGVWLHIDAAYAGSAFICPEFRYLLNGVEFADSFNFNPH 302
Query: 752 KWLLVNFDCSAMW 764
KWLLVNFDCSAMW
Sbjct: 303 KWLLVNFDCSAMW 315
|
Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine. Rattus norvegicus (taxid: 10116) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 |
| >sp|P05031|DDC_DROME Aromatic-L-amino-acid decarboxylase OS=Drosophila melanogaster GN=Ddc PE=1 SV=4 | Back alignment and function description |
|---|
Score = 385 bits (989), Expect = e-106, Method: Compositional matrix adjust.
Identities = 180/311 (57%), Positives = 241/311 (77%), Gaps = 1/311 (0%)
Query: 454 EFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTVI 513
EF++F K +DFIA+Y++NIRER VLP V+PGYL L+P PE+ E W+ +M+D+ VI
Sbjct: 40 EFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIERVI 99
Query: 514 MPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGK 573
MPG+THW SP+F+AYFPT +SYP+IV DMLSGA IGF+W++SPACTELEV++M+WLGK
Sbjct: 100 MPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGK 159
Query: 574 ALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633
L LP EFL CS G GGG+IQ TASE+TLV++L AK K + + +P E+ I KLV
Sbjct: 160 MLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLV 219
Query: 634 AYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLG 693
Y SDQ++SSVE++ ++G V +R ++S +N +RG AL A+++D+A+GLIP + TLG
Sbjct: 220 GYCSDQAHSSVERAGLLGGVKLRSVQS-ENHRMRGAALEKAIEQDVAEGLIPFYAVVTLG 278
Query: 694 TTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKW 753
TT +CAFD L+E GP+ ++N+W+HVDAAYAGSA + PEY HL +G+E DSF+FN HKW
Sbjct: 279 TTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKW 338
Query: 754 LLVNFDCSAMW 764
+LVNFDCSAMW
Sbjct: 339 MLVNFDCSAMW 349
|
Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine. Variation in the synthesis of bioamines may be a factor contributing to natural variation in life span. Drosophila melanogaster (taxid: 7227) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 |
| >sp|P20711|DDC_HUMAN Aromatic-L-amino-acid decarboxylase OS=Homo sapiens GN=DDC PE=1 SV=2 | Back alignment and function description |
|---|
Score = 385 bits (989), Expect = e-106, Method: Compositional matrix adjust.
Identities = 177/311 (56%), Positives = 232/311 (74%)
Query: 454 EFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTVI 513
EFR GK +D++A+Y++ I R V P VEPGYL L+P P+E + + I+ D+ +I
Sbjct: 5 EFRRRGKEMVDYMANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDVEKII 64
Query: 514 MPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGK 573
MPG+THW SP F AYFPT SSYP+++ DML GA G IGFSW +SPACTELE ++M+WLGK
Sbjct: 65 MPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGK 124
Query: 574 ALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633
L LP+ FLN G GGG+IQ +ASEATLV++L A+ K+I+ Q+ +P LT+ I KLV
Sbjct: 125 MLELPKAFLNEKAGEGGGVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIMEKLV 184
Query: 634 AYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLG 693
AY+SDQ++SSVE++ +IG V ++ + SD N +R AL A++ D A GLIP ++ATLG
Sbjct: 185 AYSSDQAHSSVERAGLIGGVKLKAIPSDGNFAMRASALQEALERDKAAGLIPFFMVATLG 244
Query: 694 TTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKW 753
TT C+FDNL E+GPIC + +IWLHVDAAYAGSA + PE+ HL G+E+ DSF+FN HKW
Sbjct: 245 TTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKW 304
Query: 754 LLVNFDCSAMW 764
LLVNFDCSAMW
Sbjct: 305 LLVNFDCSAMW 315
|
Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine. Homo sapiens (taxid: 9606) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 |
| >sp|O96567|DDC_DROSI Aromatic-L-amino-acid decarboxylase OS=Drosophila simulans GN=Ddc PE=3 SV=2 | Back alignment and function description |
|---|
Score = 384 bits (987), Expect = e-105, Method: Compositional matrix adjust.
Identities = 180/311 (57%), Positives = 241/311 (77%), Gaps = 1/311 (0%)
Query: 454 EFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTVI 513
EF++F K +DFIA+Y++NIR+R VLP V+PGYL L+P PE+ E W+ +M+D+ VI
Sbjct: 40 EFKDFAKTMVDFIAEYLENIRDRRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIERVI 99
Query: 514 MPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGK 573
MPG+THW SP+F+AYFPT +SYP+IV DMLSGA IGF+W++SPACTELEV++M+WLGK
Sbjct: 100 MPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGK 159
Query: 574 ALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633
L LP EFL CS G GGG+IQ TASE+TLV++L AK K + + +P E+ I KLV
Sbjct: 160 MLELPAEFLVCSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLV 219
Query: 634 AYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLG 693
Y SDQ++SSVE++ ++G V +R ++S +N +RG AL A+++DLA+GLIP + TLG
Sbjct: 220 GYCSDQAHSSVERAGLLGGVKLRSVQS-ENHRMRGAALEKAIEQDLAEGLIPFYAVVTLG 278
Query: 694 TTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKW 753
TT +CAFD L+E GP+ ++N+W+HVDAAYAGSA + PEY HL +G+E DSF+FN HKW
Sbjct: 279 TTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKW 338
Query: 754 LLVNFDCSAMW 764
+LVNFDCSAMW
Sbjct: 339 MLVNFDCSAMW 349
|
Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine. Variation in the synthesis of bioamines may be a factor contributing to natural variation in individual life span. Drosophila simulans (taxid: 7240) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 |
| >sp|P48861|DDC_MANSE Aromatic-L-amino-acid decarboxylase OS=Manduca sexta GN=Ddc PE=2 SV=1 | Back alignment and function description |
|---|
Score = 384 bits (987), Expect = e-105, Method: Compositional matrix adjust.
Identities = 176/311 (56%), Positives = 238/311 (76%)
Query: 454 EFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTVI 513
+F++F KA D+I +Y++NIR+R V+PSV+PGYL LVP + P++ E W +M D+ V+
Sbjct: 5 DFKDFAKAMTDYITEYLENIRDRQVVPSVKPGYLRPLVPEQAPQQAEPWTAVMADIERVV 64
Query: 514 MPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGK 573
M G+THWQSP+F+AYFPT +SYPSIV DMLSGA IGF+W++SPACTELEV++++WLG+
Sbjct: 65 MSGVTHWQSPRFHAYFPTANSYPSIVADMLSGAIACIGFTWIASPACTELEVVMLDWLGQ 124
Query: 574 ALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633
LGLP++FL S G GGG+IQ TASEAT V++L AK +M++ + ++P TE DI KLV
Sbjct: 125 MLGLPDQFLARSGGEGGGVIQGTASEATFVALLGAKSRMMHRVKEQHPEWTETDILGKLV 184
Query: 634 AYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLG 693
Y + Q++SSVE++ ++G V +R L+ D LRGD L A+ ED+ GLIP ++ATLG
Sbjct: 185 GYCNQQAHSSVERAGLLGGVKLRSLKPDSKRRLRGDTLREAIDEDIRNGLIPFYVVATLG 244
Query: 694 TTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKW 753
TT +CAFD L+E+G +C +IWLHVDAAYAGSA + PEY H +G+E DSF+FN HKW
Sbjct: 245 TTSSCAFDALDEIGDVCNASDIWLHVDAAYAGSAFICPEYRHFMKGVEKADSFNFNPHKW 304
Query: 754 LLVNFDCSAMW 764
+LVNFDCSAMW
Sbjct: 305 MLVNFDCSAMW 315
|
Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine. Manduca sexta (taxid: 7130) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 |
| >sp|O88533|DDC_MOUSE Aromatic-L-amino-acid decarboxylase OS=Mus musculus GN=Ddc PE=2 SV=1 | Back alignment and function description |
|---|
Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust.
Identities = 178/313 (56%), Positives = 231/313 (73%)
Query: 452 NEEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNT 511
+ EFR GK +D+IADY+D I RPV P VEPGYL L+P P+E E + I++D+
Sbjct: 3 SREFRRRGKEMVDYIADYLDGIEGRPVYPDVEPGYLRPLIPATAPQEPETYEDIIKDIEK 62
Query: 512 VIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWL 571
+IMPG+THW SP F AYFPT SSYP+++ DML GA G IGFSW +SPACTELE ++M+WL
Sbjct: 63 IIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWL 122
Query: 572 GKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631
GK L LPE FL G GGG+IQ +ASEATLV++L A+ K+I Q+ +P T+ I K
Sbjct: 123 GKMLELPEAFLAGRAGEGGGVIQGSASEATLVALLAARTKVIRQLQAASPEFTQAAIMEK 182
Query: 632 LVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIAT 691
LVAYTSDQ++SSVE++ +IG + ++ + SD N +R AL A++ D A GLIP ++AT
Sbjct: 183 LVAYTSDQAHSSVERAGLIGGIKLKAVPSDGNFSMRASALREALERDKAAGLIPFFVVAT 242
Query: 692 LGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTH 751
LGTT C+FDNL E+GPIC + +WLH+DAAYAGSA + PE+ +L G+E+ DSF+FN H
Sbjct: 243 LGTTSCCSFDNLLEVGPICNQEGVWLHIDAAYAGSAFICPEFRYLLNGVEFADSFNFNPH 302
Query: 752 KWLLVNFDCSAMW 764
KWLLVNFDCSAMW
Sbjct: 303 KWLLVNFDCSAMW 315
|
Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine. Mus musculus (taxid: 10090) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 |
| >sp|P22781|DDC_CAVPO Aromatic-L-amino-acid decarboxylase OS=Cavia porcellus GN=DDC PE=2 SV=1 | Back alignment and function description |
|---|
Score = 375 bits (963), Expect = e-103, Method: Compositional matrix adjust.
Identities = 173/311 (55%), Positives = 228/311 (73%)
Query: 454 EFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTVI 513
EFR GK +D++A+Y++ I R V P VEPGYL L+P PEE E + I+ D+ +I
Sbjct: 5 EFRRRGKEMVDYVANYLEGIESRLVYPDVEPGYLRPLIPSSAPEEPETYEDIIGDIERII 64
Query: 514 MPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGK 573
MPG+THW SP F AYFPT +SYPS++ DML GA IGFSW +SPACTELE ++++WLGK
Sbjct: 65 MPGVTHWNSPYFFAYFPTANSYPSMLADMLCGAISCIGFSWAASPACTELETVMLDWLGK 124
Query: 574 ALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633
L LP+ FL + G GGG+IQ +ASEATLV++L A+ K+I Q+ +P LT+ I KLV
Sbjct: 125 MLRLPDAFLAGNAGMGGGVIQGSASEATLVALLAARTKVIRRLQAASPELTQAAIMEKLV 184
Query: 634 AYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLG 693
AY SDQ++SSVE++ +IG V ++ + SD N +R AL A++ D A GLIP ++ATLG
Sbjct: 185 AYASDQAHSSVERAGLIGGVRMKLIPSDSNFAMRASALREALERDKAAGLIPFFVVATLG 244
Query: 694 TTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKW 753
TT C+FD+L E+GPIC + +WLH+DAAYAGSA + PE+ HL G+E+ DSF+FN HKW
Sbjct: 245 TTNCCSFDSLLEVGPICNQEEMWLHIDAAYAGSAFICPEFRHLLDGVEFADSFNFNPHKW 304
Query: 754 LLVNFDCSAMW 764
LLVNFDCSAMW
Sbjct: 305 LLVNFDCSAMW 315
|
Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine. Cavia porcellus (taxid: 10141) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 |
| >sp|P27718|DDC_BOVIN Aromatic-L-amino-acid decarboxylase OS=Bos taurus GN=DDC PE=2 SV=2 | Back alignment and function description |
|---|
Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust.
Identities = 178/311 (57%), Positives = 226/311 (72%)
Query: 454 EFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTVI 513
EFR GK +D++ADY++ I R V P V+PGYL L+P P+E E + I+ D+ +I
Sbjct: 5 EFRRRGKEMVDYVADYLEGIEGRQVFPDVDPGYLRPLIPTTAPQEPETFEAIIEDIEKII 64
Query: 514 MPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGK 573
MPG+THW SP F AYFPT SSYP+++ DML GA G IGFSW +SPACTELE ++M+WLGK
Sbjct: 65 MPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGK 124
Query: 574 ALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633
L LPE FL G GGG+IQ TASEATLV++L A+ K+ H Q+ +P L + I KLV
Sbjct: 125 MLQLPEAFLAGEAGEGGGVIQGTASEATLVALLAARTKVTRHLQAASPELMQAAIMEKLV 184
Query: 634 AYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLG 693
AY SDQ++SSVEK+ +IG V ++ + SD +R AL A++ D A GLIP ++ATLG
Sbjct: 185 AYASDQAHSSVEKAGLIGGVRLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLG 244
Query: 694 TTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKW 753
TT C+FDNL E+GPIC E +WLHVDAAYAGSA + PE+ HL G+E+ DSF+FN HKW
Sbjct: 245 TTSCCSFDNLLEVGPICHEEGLWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKW 304
Query: 754 LLVNFDCSAMW 764
LLVNFDCSAMW
Sbjct: 305 LLVNFDCSAMW 315
|
Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine. Bos taurus (taxid: 9913) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 |
| >sp|P80041|DDC_PIG Aromatic-L-amino-acid decarboxylase OS=Sus scrofa GN=DDC PE=1 SV=2 | Back alignment and function description |
|---|
Score = 371 bits (952), Expect = e-101, Method: Compositional matrix adjust.
Identities = 174/311 (55%), Positives = 229/311 (73%)
Query: 454 EFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTVI 513
+FR GK +D++ADY++ I R V P V+PGYL L+P P+E + + I++D+ +I
Sbjct: 5 DFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKII 64
Query: 514 MPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGK 573
MPG+THW SP F AYFPT SSYP+++ DML GA G IGFSW +SPACTELE ++M+WLGK
Sbjct: 65 MPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGK 124
Query: 574 ALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633
L LPE FL G GGG+IQ +ASEATLV++L A+ K++ Q+ +P LT+ + KLV
Sbjct: 125 MLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLV 184
Query: 634 AYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLG 693
AY SDQ++SSVE++ +IG V ++ + SD +R AL A++ D A GLIP ++ATLG
Sbjct: 185 AYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLG 244
Query: 694 TTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKW 753
TT C+FDNL E+GPIC E +IWLHVDAAYAGSA + PE+ HL G+E+ DSF+FN HKW
Sbjct: 245 TTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKW 304
Query: 754 LLVNFDCSAMW 764
LLVNFDCSAMW
Sbjct: 305 LLVNFDCSAMW 315
|
Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine. Sus scrofa (taxid: 9823) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 764 | ||||||
| 383858387 | 512 | PREDICTED: aromatic-L-amino-acid decarbo | 0.388 | 0.580 | 0.629 | 1e-121 | |
| 189237523 | 2575 | PREDICTED: similar to AGAP009091-PA [Tri | 0.387 | 0.114 | 0.623 | 1e-121 | |
| 270006966 | 501 | hypothetical protein TcasGA2_TC013401 [T | 0.387 | 0.590 | 0.623 | 1e-121 | |
| 357611531 | 501 | hypothetical protein KGM_15075 [Danaus p | 0.388 | 0.592 | 0.648 | 1e-121 | |
| 193603599 | 517 | PREDICTED: aromatic-L-amino-acid decarbo | 0.387 | 0.572 | 0.642 | 1e-120 | |
| 389609325 | 503 | dopa decarboxylase 2 [Papilio xuthus] | 0.388 | 0.590 | 0.642 | 1e-120 | |
| 345493638 | 519 | PREDICTED: aromatic-L-amino-acid decarbo | 0.387 | 0.570 | 0.613 | 1e-118 | |
| 350418517 | 512 | PREDICTED: alpha-methyldopa hypersensiti | 0.386 | 0.576 | 0.613 | 1e-117 | |
| 340722534 | 512 | PREDICTED: alpha-methyldopa hypersensiti | 0.388 | 0.580 | 0.607 | 1e-116 | |
| 157127150 | 521 | aromatic amino acid decarboxylase [Aedes | 0.386 | 0.566 | 0.596 | 1e-115 |
| >gi|383858387|ref|XP_003704683.1| PREDICTED: aromatic-L-amino-acid decarboxylase-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 197/313 (62%), Positives = 249/313 (79%)
Query: 452 NEEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNT 511
+EF +FGKAAIDF+A+Y D +R R VLP VEPGYL+ L+P E P++ E W+ +++D+
Sbjct: 3 TKEFVDFGKAAIDFVANYTDTLRNRKVLPDVEPGYLSELLPEEAPQKAETWQEVLKDVEE 62
Query: 512 VIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWL 571
I+PG+THW SP F+A++PT +SYP+IVG++LS IGFSWL+SPACTELEV+ MNWL
Sbjct: 63 YIIPGVTHWNSPHFHAFYPTANSYPAIVGEILSCGISCIGFSWLASPACTELEVITMNWL 122
Query: 572 GKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631
GK +GLP+EFLNCS GPGGG+IQ +ASE++LV +L AK + + +P E I++K
Sbjct: 123 GKLIGLPKEFLNCSEGPGGGVIQGSASESSLVCLLAAKEQTTRRLKHLHPDWDEASIKSK 182
Query: 632 LVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIAT 691
LVAYTSDQSNSSVEK+ I+ V ++ L +DD V RG+ LL A+KEDL KGLIPCC+IAT
Sbjct: 183 LVAYTSDQSNSSVEKAGILASVTMKLLPADDKCVFRGETLLKAIKEDLVKGLIPCCVIAT 242
Query: 692 LGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTH 751
LGTTGTCAFDNLEELGPIC EYN+WLHVDAAYAG+A + PEY +L G+EY DSF+ N H
Sbjct: 243 LGTTGTCAFDNLEELGPICNEYNVWLHVDAAYAGAAFVCPEYRYLMSGVEYADSFNINPH 302
Query: 752 KWLLVNFDCSAMW 764
KWLLVNFDCSA+W
Sbjct: 303 KWLLVNFDCSALW 315
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|189237523|ref|XP_973109.2| PREDICTED: similar to AGAP009091-PA [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 195/313 (62%), Positives = 252/313 (80%)
Query: 452 NEEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNT 511
+++FREFGKAA+D+IADY++ + ERPV+ V PGYL L+P E P+ GE W+ +++D++
Sbjct: 2077 SQQFREFGKAAVDYIADYLETVEERPVVAGVAPGYLEKLIPEEPPQAGEKWQEVLQDVDR 2136
Query: 512 VIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWL 571
+IMPGITHW SP F+A+FPT SS+PSIVG+MLS FG +G SW++SPA TELEV++MNWL
Sbjct: 2137 IIMPGITHWTSPHFHAFFPTASSFPSIVGEMLSAGFGCVGLSWVASPAYTELEVVMMNWL 2196
Query: 572 GKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631
GK LGLPEEFLNCS GPGGG+IQ +ASE T V++L AK K + Q +P L+E +I+ K
Sbjct: 2197 GKLLGLPEEFLNCSEGPGGGVIQGSASETTFVALLAAKEKTVRDIQKLHPELSEAEIKGK 2256
Query: 632 LVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIAT 691
LVAY+S+QSNSSVEKS ++G +P+R L D+ G LRGDAL A+++D +GLIPC ++A
Sbjct: 2257 LVAYSSNQSNSSVEKSGLLGSMPMRLLPVDEKGQLRGDALEEAIRKDKEQGLIPCYVVAN 2316
Query: 692 LGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTH 751
LGTT TCAFD LEELGP+CQ N+WLH+DAAYAGSA PEY +L +G+EY DSF+FN H
Sbjct: 2317 LGTTPTCAFDKLEELGPVCQRENVWLHIDAAYAGSAFACPEYRYLMKGVEYADSFNFNPH 2376
Query: 752 KWLLVNFDCSAMW 764
KW+LVNFDCSAMW
Sbjct: 2377 KWMLVNFDCSAMW 2389
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|270006966|gb|EFA03414.1| hypothetical protein TcasGA2_TC013401 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 195/313 (62%), Positives = 252/313 (80%)
Query: 452 NEEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNT 511
+++FREFGKAA+D+IADY++ + ERPV+ V PGYL L+P E P+ GE W+ +++D++
Sbjct: 3 SQQFREFGKAAVDYIADYLETVEERPVVAGVAPGYLEKLIPEEPPQAGEKWQEVLQDVDR 62
Query: 512 VIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWL 571
+IMPGITHW SP F+A+FPT SS+PSIVG+MLS FG +G SW++SPA TELEV++MNWL
Sbjct: 63 IIMPGITHWTSPHFHAFFPTASSFPSIVGEMLSAGFGCVGLSWVASPAYTELEVVMMNWL 122
Query: 572 GKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631
GK LGLPEEFLNCS GPGGG+IQ +ASE T V++L AK K + Q +P L+E +I+ K
Sbjct: 123 GKLLGLPEEFLNCSEGPGGGVIQGSASETTFVALLAAKEKTVRDIQKLHPELSEAEIKGK 182
Query: 632 LVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIAT 691
LVAY+S+QSNSSVEKS ++G +P+R L D+ G LRGDAL A+++D +GLIPC ++A
Sbjct: 183 LVAYSSNQSNSSVEKSGLLGSMPMRLLPVDEKGQLRGDALEEAIRKDKEQGLIPCYVVAN 242
Query: 692 LGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTH 751
LGTT TCAFD LEELGP+CQ N+WLH+DAAYAGSA PEY +L +G+EY DSF+FN H
Sbjct: 243 LGTTPTCAFDKLEELGPVCQRENVWLHIDAAYAGSAFACPEYRYLMKGVEYADSFNFNPH 302
Query: 752 KWLLVNFDCSAMW 764
KW+LVNFDCSAMW
Sbjct: 303 KWMLVNFDCSAMW 315
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|357611531|gb|EHJ67528.1| hypothetical protein KGM_15075 [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 203/313 (64%), Positives = 243/313 (77%)
Query: 452 NEEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNT 511
++EFRE GKA ID IADY DNIR R VLPSVEPGYL L+P + PEE ED +++++D
Sbjct: 3 SQEFREIGKATIDLIADYHDNIRNRNVLPSVEPGYLLKLLPEDAPEEPEDHQNVLKDFCE 62
Query: 512 VIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWL 571
IMPGITHWQSPQF+AYFPTG S+ S++G +LS G+IG +W +SPACTELEV+ MNWL
Sbjct: 63 TIMPGITHWQSPQFHAYFPTGQSFASMIGSILSDGLGVIGITWNASPACTELEVVTMNWL 122
Query: 572 GKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631
GK LGLPEEFLNCS GPGGGIIQ +ASEATLV +L AK K I +P+L E+ +NK
Sbjct: 123 GKLLGLPEEFLNCSEGPGGGIIQGSASEATLVCLLAAKDKKIRQLLENDPTLDEDQTKNK 182
Query: 632 LVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIAT 691
VAYTSDQ NSSVEK+ ++G + +R L+SD+NG LR L A +ED AKGLIPC +A
Sbjct: 183 FVAYTSDQCNSSVEKAGVLGSMKMRLLKSDNNGQLRAQTLKDAFEEDKAKGLIPCYFVAN 242
Query: 692 LGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTH 751
LGTTG CAFD + E+GPICQE +WLHVDAAYAG+A + PEY HL +G+EY DSFD N H
Sbjct: 243 LGTTGICAFDLIYEIGPICQEEGVWLHVDAAYAGAAFICPEYRHLMKGIEYADSFDMNAH 302
Query: 752 KWLLVNFDCSAMW 764
KWLLVNFDCSAMW
Sbjct: 303 KWLLVNFDCSAMW 315
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193603599|ref|XP_001950143.1| PREDICTED: aromatic-L-amino-acid decarboxylase-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 201/313 (64%), Positives = 252/313 (80%)
Query: 452 NEEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNT 511
+E FR GK ID+IADYVDNIR+RPVL SV+PGYL LVP E P +GEDW+ ++ D+
Sbjct: 3 SESFRVCGKTVIDYIADYVDNIRDRPVLSSVKPGYLYELVPPEAPVKGEDWKTVLDDVEN 62
Query: 512 VIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWL 571
+IMPGITHW SPQF+A+FPTG+SYP+IVGDML A G IGFSW++SPACTELEV VMNW
Sbjct: 63 IIMPGITHWNSPQFHAFFPTGNSYPAIVGDMLCNAIGSIGFSWITSPACTELEVQVMNWF 122
Query: 572 GKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631
GK L LP+EFLN S GPGGG++Q +ASEAT V +L AK + ++ +PS+T+ +I+ K
Sbjct: 123 GKILDLPKEFLNESEGPGGGVLQGSASEATFVCLLAAKDRTTKRIKALDPSMTDGEIKAK 182
Query: 632 LVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIAT 691
LVAYTSDQSNSSVEK+ ++G +P+R L++D +G + G L A+ ED+A+GLIPC ++AT
Sbjct: 183 LVAYTSDQSNSSVEKAGLLGSMPMRMLKADKSGRMTGPILAEAMAEDIARGLIPCYVVAT 242
Query: 692 LGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTH 751
LGTTGTCAFD LEELGPIC E +IWLHVDAAYAG+A +LPEY +L G+++ DSFD N H
Sbjct: 243 LGTTGTCAFDCLEELGPICNENDIWLHVDAAYAGAAFVLPEYRYLMAGVQFADSFDVNLH 302
Query: 752 KWLLVNFDCSAMW 764
KWLLVNFDCSA+W
Sbjct: 303 KWLLVNFDCSALW 315
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|389609325|dbj|BAM18274.1| dopa decarboxylase 2 [Papilio xuthus] | Back alignment and taxonomy information |
|---|
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 201/313 (64%), Positives = 247/313 (78%)
Query: 452 NEEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNT 511
+++FREFGKAAID +ADY D+IR+R VLPSVEPG L + + PE+ DW+ +++D
Sbjct: 5 SKQFREFGKAAIDILADYYDHIRDRNVLPSVEPGQLIRQMSEDAPEQPCDWQDVLKDFTE 64
Query: 512 VIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWL 571
+I+PG THW PQF+AY+PTG SY SIVG++LS G++GF+W++SPACTELEV+ MNWL
Sbjct: 65 MILPGTTHWHHPQFHAYYPTGISYASIVGNLLSDGLGVVGFNWIASPACTELEVVTMNWL 124
Query: 572 GKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631
GK LGLPEEFLNCS GPGGGIIQ +ASE+TLV +L AK KMI +NP L +DIRNK
Sbjct: 125 GKLLGLPEEFLNCSSGPGGGIIQGSASESTLVGLLAAKDKMIRRLIKENPDLDPDDIRNK 184
Query: 632 LVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIAT 691
LVAYTSDQ NSSVEK+ ++G + +R L+SD G LRGD L A ++D+A GLIPC ++A
Sbjct: 185 LVAYTSDQCNSSVEKAGVLGSMKMRLLKSDAFGKLRGDTLKKAFEDDVADGLIPCYVVAN 244
Query: 692 LGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTH 751
LGTTGTCAFD L ELGPIC+E N+WLHVDAAYAGSA + PEY +G+EY DSFD N H
Sbjct: 245 LGTTGTCAFDPLYELGPICKENNVWLHVDAAYAGSAFICPEYRGFMKGVEYADSFDMNAH 304
Query: 752 KWLLVNFDCSAMW 764
KWLLVNFDCSAMW
Sbjct: 305 KWLLVNFDCSAMW 317
|
Source: Papilio xuthus Species: Papilio xuthus Genus: Papilio Family: Papilionidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345493638|ref|XP_003427114.1| PREDICTED: aromatic-L-amino-acid decarboxylase-like isoform 2 [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 192/313 (61%), Positives = 250/313 (79%)
Query: 452 NEEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNT 511
++EFREFGKAAID+IADY +N+R+R VLPS++PGYL L+P E PE+ E WR ++ D+
Sbjct: 3 DKEFREFGKAAIDYIADYKENLRDRDVLPSIKPGYLCELLPKEAPEKPETWREVLDDVEK 62
Query: 512 VIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWL 571
IMPGITHW SP F+AY+PT +SYP+IVG+++S G +GFSW++SPACTELE++ M+WL
Sbjct: 63 HIMPGITHWHSPHFHAYYPTANSYPAIVGEIISAGIGCVGFSWIASPACTELEMITMDWL 122
Query: 572 GKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631
GK LGLPEEFLN SPGPGGG++Q +ASEATLV +L A+ +N ++ ++P E IR+K
Sbjct: 123 GKLLGLPEEFLNSSPGPGGGVLQGSASEATLVGLLAARETTVNRFKKEHPDWDEAIIRSK 182
Query: 632 LVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIAT 691
L+AYTSDQSNSSVEKS +G + ++ L +D+ LRG LL +K+D+ G IPC ++AT
Sbjct: 183 LIAYTSDQSNSSVEKSGRLGAMTMKLLPTDEKCSLRGATLLETIKKDIEDGFIPCYVVAT 242
Query: 692 LGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTH 751
LGTT TCAFDNL ELGPIC +YNIWLH+DAAYAG+A + PEY +L G++Y DSF+FN H
Sbjct: 243 LGTTPTCAFDNLNELGPICNKYNIWLHIDAAYAGAAFVCPEYRYLMSGVQYADSFNFNPH 302
Query: 752 KWLLVNFDCSAMW 764
KWLLVNFDCSA+W
Sbjct: 303 KWLLVNFDCSALW 315
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350418517|ref|XP_003491883.1| PREDICTED: alpha-methyldopa hypersensitive protein-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 192/313 (61%), Positives = 244/313 (77%)
Query: 452 NEEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNT 511
++EF +FGKA IDF+A+Y DNIR+R VL VEPGYL L+P E P++ EDW+ ++ D+
Sbjct: 3 SKEFLDFGKAMIDFVANYTDNIRDRNVLADVEPGYLFKLLPEEAPQKPEDWQQVLIDVER 62
Query: 512 VIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWL 571
I+PG+THW SP F+A++PTG+SYPSIV D+LS A G IG SW++SPACTELEV+ +NW+
Sbjct: 63 YILPGVTHWNSPHFHAFYPTGNSYPSIVADILSAAIGSIGLSWIASPACTELEVITLNWM 122
Query: 572 GKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631
K LGLP+ FL+ + G GGG+IQ +ASE TL+++L AK + + +P L E I+NK
Sbjct: 123 AKLLGLPKHFLHSNEGFGGGVIQGSASETTLIALLTAKEQTTRRMKHLHPDLDEATIKNK 182
Query: 632 LVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIAT 691
LVAY SDQSNSS+EK I+ +PVR L +DD VLRG+ LL AVKEDL KGLIPCC+I+T
Sbjct: 183 LVAYGSDQSNSSIEKGGILASIPVRLLPTDDKCVLRGETLLKAVKEDLEKGLIPCCVIST 242
Query: 692 LGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTH 751
LGTTGTCAFD L+ELGPIC+EYN+WLHVDAAYAG+A + PEY +L G+EY DSF N H
Sbjct: 243 LGTTGTCAFDKLDELGPICKEYNMWLHVDAAYAGAAFICPEYRYLMSGVEYSDSFVVNAH 302
Query: 752 KWLLVNFDCSAMW 764
KW+LVNFDCS W
Sbjct: 303 KWMLVNFDCSLFW 315
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340722534|ref|XP_003399659.1| PREDICTED: alpha-methyldopa hypersensitive protein-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 427 bits (1098), Expect = e-116, Method: Compositional matrix adjust.
Identities = 190/313 (60%), Positives = 245/313 (78%)
Query: 452 NEEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNT 511
++EF +FGKA IDF+A+Y DNIR+R VL VEPGYL L+P E P++ EDW+ ++ D+
Sbjct: 3 SKEFLDFGKAMIDFVANYTDNIRDRNVLADVEPGYLVKLLPEEAPQKPEDWQQVLIDVER 62
Query: 512 VIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWL 571
I+PG+THW SP F+A++P G+SYPSIV D+LS A G IG SW++SPACTELEV+ +NW+
Sbjct: 63 YILPGVTHWNSPHFHAFYPAGNSYPSIVADILSAAIGCIGLSWIASPACTELEVITLNWM 122
Query: 572 GKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631
GK LGLP++FL+ + G GGG+IQ +ASEATL+++L A+ + + +P L E I++K
Sbjct: 123 GKLLGLPKQFLHSNEGFGGGVIQGSASEATLIALLTAREQTTRRMKHLHPDLDEAIIKDK 182
Query: 632 LVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIAT 691
LVAY+SDQSNSSVEK I+ + +R L +DD VLRG+ LL AVKEDL KGLIPCC+I+T
Sbjct: 183 LVAYSSDQSNSSVEKGGILASISMRLLPTDDECVLRGETLLKAVKEDLEKGLIPCCVIST 242
Query: 692 LGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTH 751
LGTTGTCAFD L+ELGPIC EYNIWLHVDAAYAG+A + PEY +L G+EY DSF N H
Sbjct: 243 LGTTGTCAFDKLDELGPICNEYNIWLHVDAAYAGAAFICPEYRYLMSGVEYSDSFVVNAH 302
Query: 752 KWLLVNFDCSAMW 764
KW+L+NFDCS W
Sbjct: 303 KWMLINFDCSLFW 315
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157127150|ref|XP_001661057.1| aromatic amino acid decarboxylase [Aedes aegypti] gi|108873022|gb|EAT37247.1| AAEL010734-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 186/312 (59%), Positives = 246/312 (78%)
Query: 453 EEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTV 512
+EF+EFGKAAIDF+ADY+ NIR+R VLPSVEPGYL L+P E+PE+G+DW+ IM +
Sbjct: 7 DEFKEFGKAAIDFVADYLVNIRDRDVLPSVEPGYLHDLLPNEIPEKGDDWKTIMEEFKRF 66
Query: 513 IMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLG 572
I+PG+THWQSP F+A++P+ +SY SIVG+ L+ G++GFSW+ SP CTELEV++MNW+G
Sbjct: 67 IVPGLTHWQSPHFHAFYPSQTSYSSIVGETLAAGLGVVGFSWICSPVCTELEVIMMNWIG 126
Query: 573 KALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKL 632
+ L LP FLNC G GGG+IQ +ASE+ +++LVA+ + + ++++P LTE +IR +L
Sbjct: 127 QLLNLPRCFLNCDEGNGGGVIQGSASESIFIAVLVAREQAVRRLKNEHPELTEAEIRGRL 186
Query: 633 VAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATL 692
VAYTSDQSNS+VEKS I+G + +R L +DD+ VLRG L AV+ED A GL P ++ATL
Sbjct: 187 VAYTSDQSNSAVEKSGILGAIKMRLLPADDDCVLRGRTLKKAVEEDKANGLFPVIMVATL 246
Query: 693 GTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHK 752
GTTGTCA+DNLEE+GP C + +WLHVDAAYAG++ LPEYA +K+GLE DS +FN HK
Sbjct: 247 GTTGTCAYDNLEEIGPYCNDNKLWLHVDAAYAGASFCLPEYAWIKKGLEMADSLNFNLHK 306
Query: 753 WLLVNFDCSAMW 764
WL VNFDC AMW
Sbjct: 307 WLFVNFDCCAMW 318
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 764 | ||||||
| FB|FBgn0000075 | 510 | amd "alpha methyl dopa-resista | 0.408 | 0.611 | 0.580 | 3.2e-104 | |
| FB|FBgn0000422 | 510 | Ddc "Dopa decarboxylase" [Dros | 0.405 | 0.607 | 0.578 | 1.4e-101 | |
| RGD|2494 | 480 | Ddc "dopa decarboxylase (aroma | 0.409 | 0.652 | 0.575 | 1.2e-99 | |
| MGI|MGI:94876 | 480 | Ddc "dopa decarboxylase" [Mus | 0.409 | 0.652 | 0.568 | 6.4e-99 | |
| ZFIN|ZDB-GENE-040426-2656 | 480 | ddc "dopa decarboxylase" [Dani | 0.407 | 0.647 | 0.562 | 1.3e-98 | |
| UNIPROTKB|F6R993 | 380 | DDC "Aromatic-L-amino-acid dec | 0.407 | 0.818 | 0.572 | 7.4e-98 | |
| UNIPROTKB|P20711 | 480 | DDC "Aromatic-L-amino-acid dec | 0.407 | 0.647 | 0.569 | 9.4e-98 | |
| UNIPROTKB|E7ER62 | 338 | DDC "Aromatic-L-amino-acid dec | 0.407 | 0.920 | 0.569 | 9.4e-98 | |
| UNIPROTKB|P27718 | 487 | DDC "Aromatic-L-amino-acid dec | 0.407 | 0.638 | 0.572 | 1.2e-97 | |
| UNIPROTKB|P80041 | 486 | DDC "Aromatic-L-amino-acid dec | 0.407 | 0.639 | 0.559 | 4.1e-97 |
| FB|FBgn0000075 amd "alpha methyl dopa-resistant" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1032 (368.3 bits), Expect = 3.2e-104, P = 3.2e-104
Identities = 181/312 (58%), Positives = 248/312 (79%)
Query: 453 EEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTV 512
+EFREFGKAAID+IADY++NIR+ VLP+VEPGYL L+P EMPEE E W+ ++ D++ V
Sbjct: 4 KEFREFGKAAIDYIADYLENIRDDDVLPNVEPGYLLDLLPTEMPEEPEAWKDVLGDISRV 63
Query: 513 IMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLG 572
I PG+THWQSP +AY+PT +SYPSIVG+ML+ FG+IGFSW+ SPACTELEV+VM+WL
Sbjct: 64 IKPGLTHWQSPHMHAYYPTSTSYPSIVGEMLASGFGVIGFSWICSPACTELEVVVMDWLA 123
Query: 573 KALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKL 632
K L LP F + S GPGGG+IQ +ASEA LV++L A+ + + +++ +P L+E+++R +L
Sbjct: 124 KFLKLPAHFQHASDGPGGGVIQGSASEAVLVAVLAAREQAVANYRESHPELSESEVRGRL 183
Query: 633 VAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATL 692
VAY+SDQSNS +EK+ ++ +P+R L + ++ VLRGD L A++ED+A G IP +ATL
Sbjct: 184 VAYSSDQSNSCIEKAGVLAAMPIRLLPAGEDFVLRGDTLRGAIEEDVAAGRIPVICVATL 243
Query: 693 GTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHK 752
GTTGTCA+D++E L +C+E+ +WLHVDAAYAG A L E + L++GL+ VDS +FN HK
Sbjct: 244 GTTGTCAYDDIESLSAVCEEFKVWLHVDAAYAGGAFALEECSDLRKGLDRVDSLNFNLHK 303
Query: 753 WLLVNFDCSAMW 764
++LVNFDCSAMW
Sbjct: 304 FMLVNFDCSAMW 315
|
|
| FB|FBgn0000422 Ddc "Dopa decarboxylase" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1007 (359.5 bits), Expect = 1.4e-101, P = 1.4e-101
Identities = 180/311 (57%), Positives = 241/311 (77%)
Query: 454 EFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTVI 513
EF++F K +DFIA+Y++NIRER VLP V+PGYL L+P PE+ E W+ +M+D+ VI
Sbjct: 40 EFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIERVI 99
Query: 514 MPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGK 573
MPG+THW SP+F+AYFPT +SYP+IV DMLSGA IGF+W++SPACTELEV++M+WLGK
Sbjct: 100 MPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGK 159
Query: 574 ALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633
L LP EFL CS G GGG+IQ TASE+TLV++L AK K + + +P E+ I KLV
Sbjct: 160 MLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLV 219
Query: 634 AYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLG 693
Y SDQ++SSVE++ ++G V +R ++S+ N +RG AL A+++D+A+GLIP + TLG
Sbjct: 220 GYCSDQAHSSVERAGLLGGVKLRSVQSE-NHRMRGAALEKAIEQDVAEGLIPFYAVVTLG 278
Query: 694 TTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKW 753
TT +CAFD L+E GP+ ++N+W+HVDAAYAGSA + PEY HL +G+E DSF+FN HKW
Sbjct: 279 TTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKW 338
Query: 754 LLVNFDCSAMW 764
+LVNFDCSAMW
Sbjct: 339 MLVNFDCSAMW 349
|
|
| RGD|2494 Ddc "dopa decarboxylase (aromatic L-amino acid decarboxylase)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 989 (353.2 bits), Expect = 1.2e-99, P = 1.2e-99
Identities = 180/313 (57%), Positives = 232/313 (74%)
Query: 452 NEEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNT 511
+ EFR GK +D+IADY+D I RPV P VEPGYL +L+P P+E E + I+RD+
Sbjct: 3 SREFRRRGKEMVDYIADYLDGIEGRPVYPDVEPGYLRALIPTTAPQEPETYEDIIRDIEK 62
Query: 512 VIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWL 571
+IMPG+THW SP F AYFPT SSYP+++ DML GA G IGFSW +SPACTELE ++M+WL
Sbjct: 63 IIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWL 122
Query: 572 GKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631
GK L LPE FL G GGG+IQ +ASEATLV++L A+ KMI Q+ +P LT+ + K
Sbjct: 123 GKMLELPEAFLAGRAGEGGGVIQGSASEATLVALLAARTKMIRQLQAASPELTQAALMEK 182
Query: 632 LVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIAT 691
LVAYTSDQ++SSVE++ +IG V ++ + SD N +R AL A++ D A GLIP ++ T
Sbjct: 183 LVAYTSDQAHSSVERAGLIGGVKIKAIPSDGNYSMRAAALREALERDKAAGLIPFFVVVT 242
Query: 692 LGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTH 751
LGTT C+FDNL E+GPIC + +WLH+DAAYAGSA + PE+ +L G+E+ DSF+FN H
Sbjct: 243 LGTTSCCSFDNLLEVGPICNQEGVWLHIDAAYAGSAFICPEFRYLLNGVEFADSFNFNPH 302
Query: 752 KWLLVNFDCSAMW 764
KWLLVNFDCSAMW
Sbjct: 303 KWLLVNFDCSAMW 315
|
|
| MGI|MGI:94876 Ddc "dopa decarboxylase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 982 (350.7 bits), Expect = 6.4e-99, P = 6.4e-99
Identities = 178/313 (56%), Positives = 231/313 (73%)
Query: 452 NEEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNT 511
+ EFR GK +D+IADY+D I RPV P VEPGYL L+P P+E E + I++D+
Sbjct: 3 SREFRRRGKEMVDYIADYLDGIEGRPVYPDVEPGYLRPLIPATAPQEPETYEDIIKDIEK 62
Query: 512 VIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWL 571
+IMPG+THW SP F AYFPT SSYP+++ DML GA G IGFSW +SPACTELE ++M+WL
Sbjct: 63 IIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWL 122
Query: 572 GKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631
GK L LPE FL G GGG+IQ +ASEATLV++L A+ K+I Q+ +P T+ I K
Sbjct: 123 GKMLELPEAFLAGRAGEGGGVIQGSASEATLVALLAARTKVIRQLQAASPEFTQAAIMEK 182
Query: 632 LVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIAT 691
LVAYTSDQ++SSVE++ +IG + ++ + SD N +R AL A++ D A GLIP ++AT
Sbjct: 183 LVAYTSDQAHSSVERAGLIGGIKLKAVPSDGNFSMRASALREALERDKAAGLIPFFVVAT 242
Query: 692 LGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTH 751
LGTT C+FDNL E+GPIC + +WLH+DAAYAGSA + PE+ +L G+E+ DSF+FN H
Sbjct: 243 LGTTSCCSFDNLLEVGPICNQEGVWLHIDAAYAGSAFICPEFRYLLNGVEFADSFNFNPH 302
Query: 752 KWLLVNFDCSAMW 764
KWLLVNFDCSAMW
Sbjct: 303 KWLLVNFDCSAMW 315
|
|
| ZFIN|ZDB-GENE-040426-2656 ddc "dopa decarboxylase" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 979 (349.7 bits), Expect = 1.3e-98, P = 1.3e-98
Identities = 175/311 (56%), Positives = 235/311 (75%)
Query: 454 EFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTVI 513
EFR G+ +D++ADY++NI +R V P VEPGYL SL+P E PEE E + +++D+ VI
Sbjct: 5 EFRRRGREMVDYVADYIENIEKRQVYPDVEPGYLRSLIPEEAPEEPESYEDVVKDIERVI 64
Query: 514 MPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGK 573
MPG+THW SP F AYFPT SYP+++ D+L GA G IGFSW +SPACTELE ++++WLGK
Sbjct: 65 MPGVTHWHSPYFYAYFPTAHSYPAMLADILCGAIGCIGFSWAASPACTELETVMLDWLGK 124
Query: 574 ALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633
L LPE+FL + G GGG+IQSTASEATL+++L A+ K++ Q+ +P +E DI +KLV
Sbjct: 125 MLKLPEDFLAGTKGKGGGVIQSTASEATLITLLAARSKIVRLIQADHPDRSETDIISKLV 184
Query: 634 AYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLG 693
AY+SDQ++SSVE++ +IG V ++++ +D +RGDAL +KED A GLIP ATLG
Sbjct: 185 AYSSDQAHSSVERAGLIGGVRMKKIPTDSKFSVRGDALERILKEDKAAGLIPFFFCATLG 244
Query: 694 TTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKW 753
TT +CAFD + ELGPIC +W+H+DAAYAGSA + PE+ L G+E+ DSF+FN HKW
Sbjct: 245 TTASCAFDCITELGPICNAEKMWMHIDAAYAGSAFICPEFRPLLNGIEFADSFNFNPHKW 304
Query: 754 LLVNFDCSAMW 764
LL+NFDCSAMW
Sbjct: 305 LLINFDCSAMW 315
|
|
| UNIPROTKB|F6R993 DDC "Aromatic-L-amino-acid decarboxylase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 972 (347.2 bits), Expect = 7.4e-98, P = 7.4e-98
Identities = 178/311 (57%), Positives = 227/311 (72%)
Query: 454 EFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTVI 513
EFR GK +D++ADY++ I R V P V+PGYL L+P P+E E + I+ D+ +I
Sbjct: 5 EFRRRGKEMVDYVADYLEGIEGRQVFPDVDPGYLRPLIPTTAPQEPETFEAIIEDIEKII 64
Query: 514 MPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGK 573
MPG+THW SP F AYFPT SSYP+++ DML GA G IGFSW +SPACTELE ++M+WLGK
Sbjct: 65 MPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGK 124
Query: 574 ALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633
L LPE FL G GGG+IQ TASEATLV++L A+ K+ H Q+ +P LT+ I KLV
Sbjct: 125 MLQLPEAFLAGEAGEGGGVIQGTASEATLVALLAARTKVTRHLQAASPELTQAAIMEKLV 184
Query: 634 AYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLG 693
AY SDQ++SSVEK+ +IG V ++ + SD +R AL A++ D A GLIP ++ATLG
Sbjct: 185 AYASDQAHSSVEKAGLIGGVRLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLG 244
Query: 694 TTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKW 753
TT C+FDNL E+GPIC + +WLHVDAAYAGSA + PE+ HL G+E+ DSF+FN HKW
Sbjct: 245 TTSCCSFDNLLEVGPICHKEGLWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKW 304
Query: 754 LLVNFDCSAMW 764
LLVNFDCSAMW
Sbjct: 305 LLVNFDCSAMW 315
|
|
| UNIPROTKB|P20711 DDC "Aromatic-L-amino-acid decarboxylase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
Identities = 177/311 (56%), Positives = 232/311 (74%)
Query: 454 EFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTVI 513
EFR GK +D++A+Y++ I R V P VEPGYL L+P P+E + + I+ D+ +I
Sbjct: 5 EFRRRGKEMVDYMANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDVEKII 64
Query: 514 MPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGK 573
MPG+THW SP F AYFPT SSYP+++ DML GA G IGFSW +SPACTELE ++M+WLGK
Sbjct: 65 MPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGK 124
Query: 574 ALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633
L LP+ FLN G GGG+IQ +ASEATLV++L A+ K+I+ Q+ +P LT+ I KLV
Sbjct: 125 MLELPKAFLNEKAGEGGGVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIMEKLV 184
Query: 634 AYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLG 693
AY+SDQ++SSVE++ +IG V ++ + SD N +R AL A++ D A GLIP ++ATLG
Sbjct: 185 AYSSDQAHSSVERAGLIGGVKLKAIPSDGNFAMRASALQEALERDKAAGLIPFFMVATLG 244
Query: 694 TTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKW 753
TT C+FDNL E+GPIC + +IWLHVDAAYAGSA + PE+ HL G+E+ DSF+FN HKW
Sbjct: 245 TTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKW 304
Query: 754 LLVNFDCSAMW 764
LLVNFDCSAMW
Sbjct: 305 LLVNFDCSAMW 315
|
|
| UNIPROTKB|E7ER62 DDC "Aromatic-L-amino-acid decarboxylase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
Identities = 177/311 (56%), Positives = 232/311 (74%)
Query: 454 EFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTVI 513
EFR GK +D++A+Y++ I R V P VEPGYL L+P P+E + + I+ D+ +I
Sbjct: 5 EFRRRGKEMVDYMANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDVEKII 64
Query: 514 MPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGK 573
MPG+THW SP F AYFPT SSYP+++ DML GA G IGFSW +SPACTELE ++M+WLGK
Sbjct: 65 MPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGK 124
Query: 574 ALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633
L LP+ FLN G GGG+IQ +ASEATLV++L A+ K+I+ Q+ +P LT+ I KLV
Sbjct: 125 MLELPKAFLNEKAGEGGGVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIMEKLV 184
Query: 634 AYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLG 693
AY+SDQ++SSVE++ +IG V ++ + SD N +R AL A++ D A GLIP ++ATLG
Sbjct: 185 AYSSDQAHSSVERAGLIGGVKLKAIPSDGNFAMRASALQEALERDKAAGLIPFFMVATLG 244
Query: 694 TTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKW 753
TT C+FDNL E+GPIC + +IWLHVDAAYAGSA + PE+ HL G+E+ DSF+FN HKW
Sbjct: 245 TTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKW 304
Query: 754 LLVNFDCSAMW 764
LLVNFDCSAMW
Sbjct: 305 LLVNFDCSAMW 315
|
|
| UNIPROTKB|P27718 DDC "Aromatic-L-amino-acid decarboxylase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 970 (346.5 bits), Expect = 1.2e-97, P = 1.2e-97
Identities = 178/311 (57%), Positives = 226/311 (72%)
Query: 454 EFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTVI 513
EFR GK +D++ADY++ I R V P V+PGYL L+P P+E E + I+ D+ +I
Sbjct: 5 EFRRRGKEMVDYVADYLEGIEGRQVFPDVDPGYLRPLIPTTAPQEPETFEAIIEDIEKII 64
Query: 514 MPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGK 573
MPG+THW SP F AYFPT SSYP+++ DML GA G IGFSW +SPACTELE ++M+WLGK
Sbjct: 65 MPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGK 124
Query: 574 ALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633
L LPE FL G GGG+IQ TASEATLV++L A+ K+ H Q+ +P L + I KLV
Sbjct: 125 MLQLPEAFLAGEAGEGGGVIQGTASEATLVALLAARTKVTRHLQAASPELMQAAIMEKLV 184
Query: 634 AYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLG 693
AY SDQ++SSVEK+ +IG V ++ + SD +R AL A++ D A GLIP ++ATLG
Sbjct: 185 AYASDQAHSSVEKAGLIGGVRLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLG 244
Query: 694 TTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKW 753
TT C+FDNL E+GPIC E +WLHVDAAYAGSA + PE+ HL G+E+ DSF+FN HKW
Sbjct: 245 TTSCCSFDNLLEVGPICHEEGLWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKW 304
Query: 754 LLVNFDCSAMW 764
LLVNFDCSAMW
Sbjct: 305 LLVNFDCSAMW 315
|
|
| UNIPROTKB|P80041 DDC "Aromatic-L-amino-acid decarboxylase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 965 (344.8 bits), Expect = 4.1e-97, P = 4.1e-97
Identities = 174/311 (55%), Positives = 229/311 (73%)
Query: 454 EFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTVI 513
+FR GK +D++ADY++ I R V P V+PGYL L+P P+E + + I++D+ +I
Sbjct: 5 DFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKII 64
Query: 514 MPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGK 573
MPG+THW SP F AYFPT SSYP+++ DML GA G IGFSW +SPACTELE ++M+WLGK
Sbjct: 65 MPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGK 124
Query: 574 ALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633
L LPE FL G GGG+IQ +ASEATLV++L A+ K++ Q+ +P LT+ + KLV
Sbjct: 125 MLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLV 184
Query: 634 AYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLG 693
AY SDQ++SSVE++ +IG V ++ + SD +R AL A++ D A GLIP ++ATLG
Sbjct: 185 AYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLG 244
Query: 694 TTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKW 753
TT C+FDNL E+GPIC E +IWLHVDAAYAGSA + PE+ HL G+E+ DSF+FN HKW
Sbjct: 245 TTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKW 304
Query: 754 LLVNFDCSAMW 764
LLVNFDCSAMW
Sbjct: 305 LLVNFDCSAMW 315
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| O88533 | DDC_MOUSE | 4, ., 1, ., 1, ., 2, 8 | 0.5686 | 0.3887 | 0.6187 | yes | N/A |
| P80041 | DDC_PIG | 4, ., 1, ., 1, ., 2, 8 | 0.5594 | 0.3861 | 0.6069 | yes | N/A |
| P22781 | DDC_CAVPO | 4, ., 1, ., 1, ., 2, 8 | 0.5562 | 0.3861 | 0.6145 | yes | N/A |
| P27718 | DDC_BOVIN | 4, ., 1, ., 1, ., 2, 8 | 0.5723 | 0.3861 | 0.6057 | yes | N/A |
| P14173 | DDC_RAT | 4, ., 1, ., 1, ., 2, 8 | 0.5750 | 0.3887 | 0.6187 | yes | N/A |
| P18486 | L2AM_DROME | 4, ., 1, ., 1, ., - | 0.5801 | 0.3808 | 0.5705 | yes | N/A |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 764 | |||
| pfam00282 | 373 | pfam00282, Pyridoxal_deC, Pyridoxal-dependent deca | 1e-124 | |
| PLN02880 | 490 | PLN02880, PLN02880, tyrosine decarboxylase | 1e-102 | |
| PLN02590 | 539 | PLN02590, PLN02590, probable tyrosine decarboxylas | 5e-85 | |
| cd06450 | 345 | cd06450, DOPA_deC_like, DOPA decarboxylase family | 1e-82 | |
| COG0076 | 460 | COG0076, GadB, Glutamate decarboxylase and related | 2e-50 | |
| PLN02880 | 490 | PLN02880, PLN02880, tyrosine decarboxylase | 2e-30 | |
| pfam00282 | 373 | pfam00282, Pyridoxal_deC, Pyridoxal-dependent deca | 2e-25 | |
| cd06450 | 345 | cd06450, DOPA_deC_like, DOPA decarboxylase family | 2e-24 | |
| PLN02590 | 539 | PLN02590, PLN02590, probable tyrosine decarboxylas | 5e-21 | |
| TIGR03799 | 522 | TIGR03799, NOD_PanD_pyr, putative pyridoxal-depend | 4e-14 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 4e-12 | |
| COG0076 | 460 | COG0076, GadB, Glutamate decarboxylase and related | 2e-11 | |
| TIGR03812 | 373 | TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase | 3e-11 | |
| PRK13520 | 371 | PRK13520, PRK13520, L-tyrosine decarboxylase; Prov | 7e-09 | |
| PRK02769 | 380 | PRK02769, PRK02769, histidine decarboxylase; Provi | 2e-08 | |
| pfam01212 | 288 | pfam01212, Beta_elim_lyase, Beta-eliminating lyase | 3e-04 | |
| TIGR03531 | 444 | TIGR03531, selenium_SpcS, O-phosphoseryl-tRNA(Sec) | 3e-04 | |
| COG1104 | 386 | COG1104, NifS, Cysteine sulfinate desulfinase/cyst | 0.001 | |
| COG0520 | 405 | COG0520, csdA, Selenocysteine lyase/Cysteine desul | 0.003 |
| >gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase conserved domain | Back alignment and domain information |
|---|
Score = 375 bits (964), Expect = e-124
Identities = 149/281 (53%), Positives = 195/281 (69%), Gaps = 7/281 (2%)
Query: 484 PGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDML 543
PGYL L+P P E I+ D+ IMPG+T W SP F+AYFP G+SYPS++GDML
Sbjct: 1 PGYLRPLLPEAAPIIPEPLLDILGDIRKNIMPGVTTWHSPNFHAYFPAGNSYPSLLGDML 60
Query: 544 SGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLV 603
S A GF+W SSPACTELE +VM+WL K LGLP+EFL G GGG++Q +SE+ L+
Sbjct: 61 SDAINCNGFTWESSPACTELENVVMDWLAKMLGLPKEFLGS--GEGGGVLQGGSSESNLL 118
Query: 604 SILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDN 663
++L A+ K I ++ KLVAYTSDQ++SS+EK+A+I V +R++ +D+N
Sbjct: 119 ALLAARTKWIRRMKAAGKPSLG-----KLVAYTSDQAHSSIEKAALIAGVELREIPTDEN 173
Query: 664 GVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAY 723
G +RG L A++ED GLIP + ATLGTTG+ AFD L+ELG IC +Y++WLHVDAAY
Sbjct: 174 GKMRGMDLEKAIEEDKENGLIPFFVCATLGTTGSGAFDPLQELGDICNKYDLWLHVDAAY 233
Query: 724 AGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764
AGSA + PE+ H G+E DSF FN HKW+LV DCSA+W
Sbjct: 234 AGSAFICPEFRHWLFGIERADSFSFNPHKWMLVLLDCSALW 274
|
Length = 373 |
| >gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase | Back alignment and domain information |
|---|
Score = 322 bits (827), Expect = e-102
Identities = 148/328 (45%), Positives = 203/328 (61%), Gaps = 15/328 (4%)
Query: 442 TKASPVTPPPNEEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGED 501
+ P E+ RE G +DFIADY +I PVL V+PGYL L+P P + E
Sbjct: 2 GGEEWLRPMDAEQLRECGHRMVDFIADYYKSIENFPVLSQVQPGYLRELLPDSAPNQPET 61
Query: 502 WRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACT 561
++ D+ I+PG+THWQSP + AY+P+ SS +G+MLS ++GFSW++SPA T
Sbjct: 62 LDQVLDDVQAKILPGVTHWQSPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAAT 121
Query: 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNP 621
ELE++V++WL K L LPE+FL S G GGG+IQ TASEA LV +L A+ +++
Sbjct: 122 ELEMIVLDWLAKLLNLPEQFL--STGNGGGVIQGTASEAVLVVLLAARDRVLR------- 172
Query: 622 SLTENDIRNKLVAYTSDQSNSSVEKSAIIGDV---PVRQLRSDD--NGVLRGDALLTAVK 676
+ +N + KLV Y SDQ++S+++K+ I + R L++D N L + L A+
Sbjct: 173 KVGKNALE-KLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAIS 231
Query: 677 EDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHL 736
DL+ GLIP L AT+GTT + A D L ELG I + +W HVDAAYAGSA + PEY H
Sbjct: 232 TDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAGSACICPEYRHY 291
Query: 737 KRGLEYVDSFDFNTHKWLLVNFDCSAMW 764
G+E DSF+ N HKW L NFDCS +W
Sbjct: 292 IDGVEEADSFNMNAHKWFLTNFDCSLLW 319
|
Length = 490 |
| >gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Score = 279 bits (714), Expect = 5e-85
Identities = 142/331 (42%), Positives = 202/331 (61%), Gaps = 19/331 (5%)
Query: 443 KASPVTPPPNEEFREFGKAAIDFIADYVDNIRERP----VLPSVEPGYLASLVPGEMPEE 498
K + P +E RE G +DFIADY N+++ P VL V+PGYL ++P PE
Sbjct: 47 KVVKMKPMDSELLREQGHIMVDFIADYYKNLQDSPQDFPVLSQVQPGYLRDMLPDSAPER 106
Query: 499 GEDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSP 558
E + ++ D++ IMPGITHWQSP + AY+ + +S +G+ML+ ++GF+WL+SP
Sbjct: 107 PESLKELLDDVSKKIMPGITHWQSPSYFAYYASSTSVAGFLGEMLNAGLSVVGFTWLTSP 166
Query: 559 ACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQS 618
A TELE++V++WL K L LP+ FL S G GGG+IQ T EA LV +L A+ +++
Sbjct: 167 AATELEIIVLDWLAKLLQLPDHFL--STGNGGGVIQGTGCEAVLVVVLAARDRILKK--- 221
Query: 619 KNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDV---PVRQLRSDD--NGVLRGDALLT 673
+ +LV Y SDQ++SS K+ +IG + +R L++D N + ++L
Sbjct: 222 -----VGKTLLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEE 276
Query: 674 AVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEY 733
A+ DLAKG IP + AT+GTT + A D L LG I ++Y IWLHVDAAYAG+A + PEY
Sbjct: 277 AISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEY 336
Query: 734 AHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764
G+E DSF+ N HKWL N CS +W
Sbjct: 337 RKFIDGIENADSFNMNAHKWLFANQTCSPLW 367
|
Length = 539 |
| >gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family | Back alignment and domain information |
|---|
Score = 266 bits (683), Expect = 1e-82
Identities = 95/238 (39%), Positives = 135/238 (56%), Gaps = 12/238 (5%)
Query: 527 AYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSP 586
A F T P+++ +ML+ A I F+W SPA TE+E V+NWL K GLP
Sbjct: 3 AGFVTTMDPPALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLP-------S 55
Query: 587 GPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEK 646
G+ S SE+ L+++L A+ + ++ +KLV SDQ++ SVEK
Sbjct: 56 EDADGVFTSGGSESNLLALLAARDRARKRLKAGGG-----RGIDKLVIVCSDQAHVSVEK 110
Query: 647 SAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEEL 706
+A DV VR + D++G + +AL A+ ED A+GL P ++AT GTT T A D LEE+
Sbjct: 111 AAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEI 170
Query: 707 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764
+ ++Y++WLHVDAAY G L PE HL G+E VDS + HK+ LV CSA+
Sbjct: 171 ADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVL 228
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. Length = 345 |
| >gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 182 bits (465), Expect = 2e-50
Identities = 86/305 (28%), Positives = 132/305 (43%), Gaps = 24/305 (7%)
Query: 463 IDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMN-TVIMPGITHWQ 521
ID + D +R S+ P + A PE+GE ++ ++ +I +
Sbjct: 1 IDGLIDKDMLNSKRYSGDSLSPLFGALSDSRMAPEKGEPLEEVLDELAELLIKDELYLDG 60
Query: 522 SPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEF 581
P+ N + P + ++L A SPA ELE V+N L LG PEE
Sbjct: 61 HPRANLAGFCPTRVPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEA 120
Query: 582 LNCSPGPGGGIIQSTASEATLVSILVAKRKMINHW--QSKNPSLTENDIRNKLVAYTSDQ 639
G S +EA L+++L A+ W ++ S N S+
Sbjct: 121 S--------GTFTSGGTEANLLALLAAR----ERWRKRALAESGKPGGKPN---IVCSET 165
Query: 640 SNSSVEKSAIIGDVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTC 698
++ S EK+A + +R++ + + + DAL A+ E+ G ++ T GTT T
Sbjct: 166 AHFSFEKAARYLGLGLRRVPTVPTDYRIDVDALEEAIDENTIGG----VVVGTAGTTDTG 221
Query: 699 AFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLK-RGLEYVDSFDFNTHKWLLVN 757
+ D++EEL I +EY IWLHVDAA+ G L E GLE VDS + HK+ L
Sbjct: 222 SIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAP 281
Query: 758 FDCSA 762
C
Sbjct: 282 IGCGV 286
|
Length = 460 |
| >gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 2e-30
Identities = 62/146 (42%), Positives = 84/146 (57%), Gaps = 9/146 (6%)
Query: 126 FQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS 185
++ WQIPLGRRFR+LKLWM LR YG++ LQ+Y+R HI LAK+F LV QD RFE+V P
Sbjct: 350 YKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRI 409
Query: 186 MGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFA 245
LVCFRL V + DN N LN + D + + I+I + +RFA
Sbjct: 410 FSLVCFRL-VPPKNNEDN--------GNKLNHDLLDAVNSSGKIFISHTVLSGKYVLRFA 460
Query: 246 ICSSQTEESDVQLGWNEIRTATEEVL 271
+ + TEE V W ++ ++L
Sbjct: 461 VGAPLTEERHVTAAWKVLQDEASKLL 486
|
Length = 490 |
| >gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase conserved domain | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 2e-25
Identities = 41/69 (59%), Positives = 50/69 (72%)
Query: 126 FQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS 185
+ WQIPL RRFR LKLW LRSYG++GLQ +R+H+ LAK F LV +D RFE+
Sbjct: 305 YGDWQIPLSRRFRILKLWFVLRSYGVEGLQNQIRRHVELAKYFEALVRKDSRFEICAERG 364
Query: 186 MGLVCFRLK 194
+GLVCFRLK
Sbjct: 365 LGLVCFRLK 373
|
Length = 373 |
| >gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 2e-24
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 13/130 (10%)
Query: 137 FRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVR 196
RALKLW TLR +G G ++ + + LAK A+L+ D FEL+ P++ LVCFRLK
Sbjct: 229 VRALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVCFRLKP- 287
Query: 197 FWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDV 256
S ++LN + DR+ R ++ + +RF + + T D
Sbjct: 288 ------------SVKLDELNYDLSDRLNERGGWHVPATTLGGPNVLRFVVTNPLTTRDDA 335
Query: 257 QLGWNEIRTA 266
+I A
Sbjct: 336 DALLEDIERA 345
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. Length = 345 |
| >gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Score = 97.1 bits (241), Expect = 5e-21
Identities = 51/139 (36%), Positives = 74/139 (53%), Gaps = 9/139 (6%)
Query: 126 FQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS 185
++ WQI L RRFR+LKLWM LR YG + L+ ++R H++LAK F D V QD FE+V
Sbjct: 398 YKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRY 457
Query: 186 MGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFA 245
LVCFRL D+ N+ N+ + + + I+I + + +RFA
Sbjct: 458 FSLVCFRLAPVDGDEDQC---------NERNRELLAAVNSTGKIFISHTALSGKFVLRFA 508
Query: 246 ICSSQTEESDVQLGWNEIR 264
+ + TEE V W I+
Sbjct: 509 VGAPLTEEKHVTEAWQIIQ 527
|
Length = 539 |
| >gnl|CDD|163511 TIGR03799, NOD_PanD_pyr, putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 4e-14
Identities = 43/130 (33%), Positives = 65/130 (50%), Gaps = 3/130 (2%)
Query: 630 NKLVAYTSDQSNSSVEKSAI---IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPC 686
+ L S++ + S+ K+A IG + +++D N + DAL E + + P
Sbjct: 208 DGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPL 267
Query: 687 CLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSF 746
++ GTT T D L+E+ I QE HVDAA+ G+ LL Y HL +G+E DS
Sbjct: 268 AIVGVAGTTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSV 327
Query: 747 DFNTHKWLLV 756
+ HK L V
Sbjct: 328 TIDAHKQLYV 337
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent) [Biosynthesis of cofactors, prosthetic groups, and carriers, Pantothenate and coenzyme A]. Length = 522 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 4e-12
Identities = 36/180 (20%), Positives = 53/180 (29%), Gaps = 27/180 (15%)
Query: 586 PGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVE 645
PG + + + A ++L + S
Sbjct: 15 PGNDKAVFVPSGTGANEAALLALLGP-------------------GDEVIVDANGHGSRY 55
Query: 646 KSAI-IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLE 704
A + + DD G L A+ E+L ++ T TT L+
Sbjct: 56 WVAAELAGAKPVPVPVDDAG---YGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLK 112
Query: 705 ELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764
E+ I +EY I L VDAA AG A P D F+ HK L +
Sbjct: 113 EIRKIAKEYGILLLVDAASAGGASPAPGV---LIPEGGADVVTFSLHKNLGGE-GGGVVI 168
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
| >gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 2e-11
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 126 FQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS 185
F GR+ AL L+ LR G +G + L + + LA+ A+ +E+ FELV P
Sbjct: 314 FTILGSRPGRQ--ALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNEPE 371
Query: 186 MGLVCFRLK 194
+ +V FRLK
Sbjct: 372 LPIVAFRLK 380
|
Length = 460 |
| >gnl|CDD|234361 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 3e-11
Identities = 50/191 (26%), Positives = 81/191 (42%), Gaps = 34/191 (17%)
Query: 558 PACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQ 617
P ++E V+ LG L LP+ G I S +EA + A R N +
Sbjct: 55 PGTKKIEEEVVGSLGNLLHLPD---------AYGYIVSGGTEANIQ----AVRAAKNLAR 101
Query: 618 SKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKE 677
+ ++ S ++ S EK+A + + +R D++ D + V++
Sbjct: 102 EEKR-------TPNIIVPES--AHFSFEKAAEMLGLELRYAPLDED--YTVD--VKDVED 148
Query: 678 DLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLK 737
+ I ++ GTT D++EEL I E I+LHVDAA+ G ++P LK
Sbjct: 149 LIDDNTI--GIVGIAGTTELGQIDDIEELSKIALENGIYLHVDAAFGG--FVIP---FLK 201
Query: 738 RGLEYVDSFDF 748
+G FDF
Sbjct: 202 KGYNPPP-FDF 211
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 373 |
| >gnl|CDD|237409 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 7e-09
Identities = 53/196 (27%), Positives = 86/196 (43%), Gaps = 31/196 (15%)
Query: 558 PACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQ 617
P +LE + LG+ L LP+ G I S +EA + ++ R N +
Sbjct: 55 PGTAKLEEEAVEMLGELLHLPD---------AYGYITSGGTEANIQAV----RAARNLAK 101
Query: 618 SKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKE 677
++ P +V S ++ S +K+A + V +R+ DD+ R D + AV++
Sbjct: 102 AEKP---------NIVVPES--AHFSFDKAADMLGVELRRAPLDDD--YRVD--VKAVED 146
Query: 678 DLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSAL-LLPEYAHL 736
+ I ++ GTT D + EL I E I+LHVDAA+ G + L + +
Sbjct: 147 LIDDNTI--GIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNF 204
Query: 737 KRGLEYVDSFDFNTHK 752
L VDS + HK
Sbjct: 205 DFSLPGVDSITIDPHK 220
|
Length = 371 |
| >gnl|CDD|235068 PRK02769, PRK02769, histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 2e-08
Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 6/125 (4%)
Query: 633 VAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATL 692
Y S ++ SV K A + + R + S NG + D L++ +KE+ + I + A +
Sbjct: 112 TLYYSKDTHYSVSKIARLLRIKSRVITSLPNGEIDYDDLISKIKENKNQPPI---IFANI 168
Query: 693 GTTGTCAFDNLEELGPICQEYNI---WLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFN 749
GTT T A DN++E+ I ++ I ++H DAA +G L + +DS +
Sbjct: 169 GTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFADGIDSIAIS 228
Query: 750 THKWL 754
HK++
Sbjct: 229 GHKFI 233
|
Length = 380 |
| >gnl|CDD|216367 pfam01212, Beta_elim_lyase, Beta-eliminating lyase | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 3e-04
Identities = 29/119 (24%), Positives = 43/119 (36%), Gaps = 14/119 (11%)
Query: 648 AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAK-----GLIPCCLIATLGTTGTC-AFD 701
A +G L + G L + L A++ GLI G + +
Sbjct: 91 AELGGAQPVPLPGAEAGKLDLEDLEAAIRPVGDIHFPPTGLI-SLENTHNSAGGQVVSLE 149
Query: 702 NLEELGPICQEYNIWLHVDAA---YAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757
L E+ I +E+ I LH+D A A AL + +K Y DS + K L
Sbjct: 150 ELREIRAIAREHGIPLHLDGARLANAAVALGVI----VKEITSYADSVSMSLSKGLGAP 204
|
Length = 288 |
| >gnl|CDD|211833 TIGR03531, selenium_SpcS, O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 21/105 (20%)
Query: 665 VLRGDALLTAVK------EDLAKGLIPCCLIATLGTTGTC----AFDNLEELGPICQEYN 714
VL GD L T V+ E++ I C L +T +C + D++EE+ IC Y+
Sbjct: 181 VLDGDELTTDVEDIERAIEEIGPDNILCVL-----STTSCFAPRSPDDIEEIAKICANYD 235
Query: 715 IWLHVDAAYAGSALLLPEYAH-LKRGLEY--VDSFDFNTHKWLLV 756
I V+ AY L +Y + + ++ VD+ +T K +V
Sbjct: 236 IPHIVNNAY---GLQSNKYMELINKAIKVGRVDAVVSSTDKNFMV 277
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein [Protein synthesis, tRNA aminoacylation]. Length = 444 |
| >gnl|CDD|224029 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 26/117 (22%)
Query: 624 TEND---IRNKLVAYTSDQSN-----SSVEKSAIIGDVPVRQLRS----------DDNGV 665
TE++ I+ +AY + Q S++E A++ R L D NG+
Sbjct: 71 TESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLN--TCRYLERQGFEVTYLPVDSNGL 128
Query: 666 LRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAA 722
+ + L A++ D L+ ++ TGT + E+G IC+E I HVDA
Sbjct: 129 VDLEQLEEALRPDTI--LV--SIMHANNETGTIQ--PIAEIGEICKERGILFHVDAV 179
|
Length = 386 |
| >gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 12/101 (11%)
Query: 655 VRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYN 714
VR + DD+G+L DAL + K L+ L TGT ++E+ + E+
Sbjct: 139 VRVIPLDDDGLLDLDALEKLITPK-TK-LV--ALSHVSNVTGTVN--PVKEIAELAHEHG 192
Query: 715 IWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLL 755
+ VDAA A L + ++ D F+ HKWLL
Sbjct: 193 ALVLVDAAQAAGHLPID----VQE--LGCDFLAFSGHKWLL 227
|
Length = 405 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 764 | |||
| PLN02590 | 539 | probable tyrosine decarboxylase | 100.0 | |
| KOG0628|consensus | 511 | 100.0 | ||
| PLN02880 | 490 | tyrosine decarboxylase | 100.0 | |
| KOG0629|consensus | 510 | 100.0 | ||
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 100.0 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 100.0 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 100.0 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 100.0 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 100.0 | |
| PLN02263 | 470 | serine decarboxylase | 100.0 | |
| PLN02880 | 490 | tyrosine decarboxylase | 100.0 | |
| KOG0629|consensus | 510 | 100.0 | ||
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 100.0 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 100.0 | |
| KOG0628|consensus | 511 | 100.0 | ||
| PLN03032 | 374 | serine decarboxylase; Provisional | 100.0 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 100.0 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 100.0 | |
| KOG1383|consensus | 491 | 100.0 | ||
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 100.0 | |
| PLN02263 | 470 | serine decarboxylase | 100.0 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 100.0 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.98 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.97 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.97 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.95 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.93 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.92 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.91 | |
| KOG1383|consensus | 491 | 99.91 | ||
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.9 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.87 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.85 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.84 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.84 | |
| PLN02651 | 364 | cysteine desulfurase | 99.83 | |
| KOG1549|consensus | 428 | 99.82 | ||
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.79 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.79 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.78 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.77 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.75 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.74 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.74 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.74 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.72 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.71 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.71 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.7 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.7 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.68 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.67 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.67 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.66 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.66 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.63 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.62 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.62 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.61 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.61 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.61 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.6 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.58 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.57 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.56 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.56 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.56 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.55 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.55 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.53 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.52 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.52 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.51 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.49 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.46 | |
| PLN02721 | 353 | threonine aldolase | 99.45 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.43 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.43 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.42 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.41 | |
| KOG1368|consensus | 384 | 99.38 | ||
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.37 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.34 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.33 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.31 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.3 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.3 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.3 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.28 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.28 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.28 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.27 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.26 | |
| KOG0630|consensus | 838 | 99.26 | ||
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.24 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.23 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.23 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.23 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.21 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.19 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.19 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.18 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.18 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.16 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.15 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.15 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.15 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.14 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.14 | |
| KOG0630|consensus | 838 | 99.13 | ||
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.13 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.13 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.13 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.13 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.12 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.11 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.11 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.08 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.07 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.07 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.07 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.06 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.06 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.05 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.05 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.05 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.05 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.04 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.04 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.03 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.03 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.01 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.01 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.0 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.0 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 98.97 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 98.97 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 98.97 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 98.96 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 98.96 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 98.96 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 98.95 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 98.95 | |
| PLN02483 | 489 | serine palmitoyltransferase | 98.94 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 98.94 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.94 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 98.94 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 98.94 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 98.93 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 98.93 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 98.93 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 98.93 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 98.93 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.93 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 98.93 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 98.93 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 98.93 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 98.92 | |
| PRK07337 | 388 | aminotransferase; Validated | 98.92 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 98.92 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 98.92 | |
| PLN02656 | 409 | tyrosine transaminase | 98.91 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 98.91 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 98.9 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 98.9 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.9 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 98.9 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 98.9 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 98.89 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 98.89 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 98.89 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 98.89 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 98.89 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 98.89 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 98.88 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 98.88 | |
| PLN02509 | 464 | cystathionine beta-lyase | 98.87 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 98.87 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 98.87 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 98.87 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 98.87 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 98.87 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 98.86 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 98.86 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 98.86 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 98.86 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 98.85 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 98.85 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 98.85 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 98.85 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 98.85 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 98.85 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 98.85 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 98.84 | |
| PLN02242 | 418 | methionine gamma-lyase | 98.84 | |
| PRK07324 | 373 | transaminase; Validated | 98.84 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 98.83 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 98.83 | |
| PRK07682 | 378 | hypothetical protein; Validated | 98.83 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 98.82 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 98.82 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 98.82 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 98.8 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 98.8 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 98.8 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 98.79 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 98.78 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 98.78 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 98.78 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 98.77 | |
| PRK07683 | 387 | aminotransferase A; Validated | 98.76 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.76 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 98.75 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 98.75 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 98.75 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 98.74 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 98.74 | |
| PLN02651 | 364 | cysteine desulfurase | 98.73 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 98.73 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 98.71 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 98.71 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 98.71 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 98.71 | |
| PLN02721 | 353 | threonine aldolase | 98.71 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 98.7 | |
| PLN02187 | 462 | rooty/superroot1 | 98.7 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 98.7 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 98.69 | |
| PLN02822 | 481 | serine palmitoyltransferase | 98.69 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 98.69 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 98.68 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 98.67 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 98.67 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 98.67 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 98.65 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 98.64 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 98.64 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 98.63 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.63 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 98.63 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 98.63 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 98.62 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 98.62 | |
| PLN02368 | 407 | alanine transaminase | 98.62 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 98.62 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 98.62 | |
| PRK08068 | 389 | transaminase; Reviewed | 98.62 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 98.61 | |
| PLN02231 | 534 | alanine transaminase | 98.6 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 98.6 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 98.6 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 98.57 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 98.57 | |
| PRK08175 | 395 | aminotransferase; Validated | 98.56 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 98.55 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 98.55 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 98.55 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 98.55 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 98.55 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 98.55 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 98.55 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 98.54 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 98.53 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 98.52 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 98.52 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 98.51 | |
| PRK09148 | 405 | aminotransferase; Validated | 98.51 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 98.51 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 98.51 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 98.5 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 98.5 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 98.49 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 98.48 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 98.48 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 98.48 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 98.47 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 98.47 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 98.47 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 98.47 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 98.47 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 98.46 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 98.46 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 98.46 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 98.46 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 98.46 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 98.44 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 98.44 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 98.44 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 98.39 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 98.39 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 98.38 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 98.36 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 98.36 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 98.36 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 98.35 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 98.35 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 98.34 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 98.33 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 98.33 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 98.33 | |
| PRK06855 | 433 | aminotransferase; Validated | 98.33 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 98.33 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 98.31 | |
| KOG2040|consensus | 1001 | 98.29 | ||
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 98.25 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 98.24 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 98.22 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 98.2 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 98.19 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 98.18 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 98.18 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 98.18 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 98.17 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 98.17 | |
| KOG0257|consensus | 420 | 98.17 | ||
| KOG2862|consensus | 385 | 98.14 | ||
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 98.12 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 98.1 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 98.09 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 98.08 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 98.07 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 98.06 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 98.05 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 98.04 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 98.03 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 98.02 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 98.02 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 98.0 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 97.99 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 97.98 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.96 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 97.96 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 97.95 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 97.94 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 97.94 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 97.93 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 97.92 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 97.89 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 97.89 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 97.88 | |
| PLN02452 | 365 | phosphoserine transaminase | 97.87 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 97.87 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 97.85 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 97.84 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 97.82 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 97.81 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 97.8 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 97.78 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 97.77 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 97.77 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 97.76 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 97.76 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 97.75 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 97.74 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 97.73 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 97.72 | |
| KOG0259|consensus | 447 | 97.72 | ||
| PLN02822 | 481 | serine palmitoyltransferase | 97.71 | |
| KOG0256|consensus | 471 | 97.69 | ||
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 97.68 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 97.68 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 97.67 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 97.67 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 97.66 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 97.66 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 97.65 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 97.65 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 97.63 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 97.62 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 97.6 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 97.6 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 97.59 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 97.58 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 97.56 | |
| PLN02397 | 423 | aspartate transaminase | 97.56 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 97.55 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 97.55 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 97.54 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 97.51 | |
| PLN00144 | 382 | acetylornithine transaminase | 97.5 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 97.5 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 97.49 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 97.49 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 97.46 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 97.46 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 97.45 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 97.45 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 97.44 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 97.42 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 97.42 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 97.41 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 97.41 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 97.4 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 97.4 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 97.39 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 97.39 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 97.36 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 97.36 | |
| PLN02483 | 489 | serine palmitoyltransferase | 97.34 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 97.34 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 97.34 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 97.34 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 97.33 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 97.31 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 97.29 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 97.29 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 97.29 | |
| KOG1368|consensus | 384 | 97.28 | ||
| PRK07908 | 349 | hypothetical protein; Provisional | 97.28 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 97.26 | |
| PRK07678 | 451 | aminotransferase; Validated | 97.25 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 97.24 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 97.19 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 97.19 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 97.17 | |
| KOG0053|consensus | 409 | 97.17 | ||
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 97.16 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 97.16 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 97.15 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 97.15 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 97.14 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 97.14 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 97.13 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 97.13 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 97.12 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 97.11 | |
| PRK06105 | 460 | aminotransferase; Provisional | 97.11 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 97.11 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 97.08 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 97.07 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 97.07 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 97.07 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 97.06 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 97.06 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 97.05 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 97.04 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 97.03 | |
| PLN02656 | 409 | tyrosine transaminase | 97.03 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 97.02 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 97.01 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 97.0 | |
| KOG0258|consensus | 475 | 96.96 | ||
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 96.96 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 96.95 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 96.94 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 96.91 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 96.9 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 96.9 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 96.9 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 96.89 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 96.89 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 96.88 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 96.87 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 96.87 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 96.83 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 96.81 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 96.8 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 96.75 | |
| PLN02452 | 365 | phosphoserine transaminase | 96.75 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 96.75 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 96.74 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 96.74 | |
| PRK07324 | 373 | transaminase; Validated | 96.74 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 96.71 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 96.69 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 96.69 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 96.69 | |
| PRK07682 | 378 | hypothetical protein; Validated | 96.67 | |
| KOG1549|consensus | 428 | 96.67 | ||
| PRK07046 | 453 | aminotransferase; Validated | 96.66 | |
| KOG1357|consensus | 519 | 96.66 | ||
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 96.65 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 96.64 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 96.63 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 96.61 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 96.61 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 96.61 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 96.6 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 96.6 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 96.6 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 96.59 | |
| KOG0634|consensus | 472 | 96.59 | ||
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 96.56 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 96.54 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 96.5 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 96.5 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 96.5 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 96.48 | |
| KOG3843|consensus | 432 | 96.44 | ||
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 96.43 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 96.43 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 96.42 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 96.42 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 96.4 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 96.39 | |
| KOG2467|consensus | 477 | 96.38 | ||
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 96.35 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 96.33 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 96.3 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 96.3 |
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-66 Score=594.98 Aligned_cols=310 Identities=45% Similarity=0.860 Sum_probs=290.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC----CCCCCCCChhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCC
Q psy13453 445 SPVTPPPNEEFREFGKAAIDFIADYVDNIRE----RPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHW 520 (764)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~v~~i~~y~~~~~~----~~v~~~~~p~~l~~~l~~~lP~~g~~~~~il~~l~~~i~~~~~~~ 520 (764)
+++..||+++||+.+++++|++.+|++++.+ +||.+...|+++++.++.++|++|++++++++++.+.+.++.++|
T Consensus 49 ~~~~~m~~~~~r~~~~~~~d~i~~~~~~~~~~~~~~pv~~~~~p~~l~~~l~~~~P~~g~~~~~il~~~~~~i~p~~~~~ 128 (539)
T PLN02590 49 VKMKPMDSELLREQGHIMVDFIADYYKNLQDSPQDFPVLSQVQPGYLRDMLPDSAPERPESLKELLDDVSKKIMPGITHW 128 (539)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCChHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhccCCcC
Confidence 3445599999999999999999999999876 799999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCCCChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHH
Q psy13453 521 QSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEA 600 (764)
Q Consensus 521 ~~P~~~~~~~~~~~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeA 600 (764)
+||+||+|++++++++++++|++++++|+++++|+.+|++++||+++++||++++|+|++|. ..+.++|+||+|||+|
T Consensus 129 ~hP~f~a~~~~~~~~~~~lgd~l~sa~n~~~~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~--~~~~~gG~~~sGgSeA 206 (539)
T PLN02590 129 QSPSYFAYYASSTSVAGFLGEMLNAGLSVVGFTWLTSPAATELEIIVLDWLAKLLQLPDHFL--STGNGGGVIQGTGCEA 206 (539)
T ss_pred CCCCeeEeccCCCcHHHHHHHHHHHhcccccCCcccCchhHHHHHHHHHHHHHHhCCCcccc--cCCCCceEEcCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999998765 2344789999999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCC---ceEEEecC--CCCcccHHHHHHHH
Q psy13453 601 TLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDV---PVRQLRSD--DNGVLRGDALLTAV 675 (764)
Q Consensus 601 Nl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl---~v~~Vp~d--~~g~md~~~Le~~I 675 (764)
|++||.+||++..+..+.. ..+++++|+|+++|||+.|||+++|+ +++.||+| ++++||+++|+++|
T Consensus 207 nl~al~aAR~~~~~~~g~~--------~~~~~vvy~S~~aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I 278 (539)
T PLN02590 207 VLVVVLAARDRILKKVGKT--------LLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAI 278 (539)
T ss_pred HHHHHHHHHHHHHhhhccc--------CCCCEEEEecCCchHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHH
Confidence 9999999999876543221 24678999999999999999999999 69999998 46899999999999
Q ss_pred HHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCC
Q psy13453 676 KEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLL 755 (764)
Q Consensus 676 ~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~ 755 (764)
++++++|.+|++||+|+|||.+|+||||++|+++|++||+||||||||||+++++|+++++++|+|+||||++|+||||+
T Consensus 279 ~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~ 358 (539)
T PLN02590 279 SHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLF 358 (539)
T ss_pred HHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCceeeC
Q psy13453 756 VNFDCSAMW 764 (764)
Q Consensus 756 ~P~~~g~l~ 764 (764)
+|++||++|
T Consensus 359 ~p~~cg~ll 367 (539)
T PLN02590 359 ANQTCSPLW 367 (539)
T ss_pred cCcCEEEEE
Confidence 999999986
|
|
| >KOG0628|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-67 Score=562.37 Aligned_cols=315 Identities=60% Similarity=1.092 Sum_probs=308.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCcccccc
Q psy13453 450 PPNEEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPQFNAYF 529 (764)
Q Consensus 450 ~~~~~~~~~~~~~v~~i~~y~~~~~~~~v~~~~~p~~l~~~l~~~lP~~g~~~~~il~~l~~~i~~~~~~~~~P~~~~~~ 529 (764)
|+.++||+.++++||+|++|++++++++|+|.++|+++++.+|...|++|+++++|++|+.+.|+|+++||+||+||+|+
T Consensus 1 Md~~efR~~gk~mVD~IadY~e~ir~r~v~P~v~PGYl~~llP~~aPe~pE~~~~Il~D~ekiI~PGitHw~hP~fhAyf 80 (511)
T KOG0628|consen 1 MDSEEFREEGKEMVDYIADYLENIRKRRVLPDVKPGYLRDLLPSKAPEKPESWEDILGDLEKIIMPGITHWQHPHFHAYF 80 (511)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCcchhhhhCCCCCCCChhhHHHHHHHHHHHccCCCcccCCCceeeEc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHH
Q psy13453 530 PTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAK 609 (764)
Q Consensus 530 ~~~~~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR 609 (764)
+++.++++++||+|+.+++..+++|..+|++|+||..+++||++++++|+.|...+.++++|++.+++|++++.++.+||
T Consensus 81 pa~~s~~siladmLs~~i~~vGFtW~ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR 160 (511)
T KOG0628|consen 81 PAGNSYPSILADMLSGGIGCVGFTWASSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAAR 160 (511)
T ss_pred cCccchHHHHHHHHhcccccccceeecCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred HHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEE
Q psy13453 610 RKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLI 689 (764)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~Vv 689 (764)
.+...+.+...|.+.++....++|+|+|+++|+|++|||.+.|+++|.+|+|+++.|+.+.|+++|++|+++|.+||+|+
T Consensus 161 ~~~i~~~k~~~p~~~e~~~~~~lV~Y~SDqahssveka~~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~ 240 (511)
T KOG0628|consen 161 TEKIEEIKSRPPELHESSVLARLVAYCSDQAHSSVEKACLIAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFVC 240 (511)
T ss_pred HHHHHHhhcCCCcccchhhhhhheEEecCcccchHHHhHhhcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEEE
Confidence 99999888877778887888999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 690 ATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 690 ataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
+|.|||.++++|+|++|..||+++|+||||||||+|.+++||++|.+++|||+|||+++++|||+.+.++|+.||
T Consensus 241 at~GTT~~ca~D~l~elg~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lW 315 (511)
T KOG0628|consen 241 ATLGTTSSCAFDELEELGPVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLW 315 (511)
T ss_pred EeecCccccccccHHHhcchhhhcCEEEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEEeeeeecce
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-64 Score=570.71 Aligned_cols=308 Identities=47% Similarity=0.873 Sum_probs=289.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCccc
Q psy13453 447 VTPPPNEEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPQFN 526 (764)
Q Consensus 447 ~~~~~~~~~~~~~~~~v~~i~~y~~~~~~~~v~~~~~p~~l~~~l~~~lP~~g~~~~~il~~l~~~i~~~~~~~~~P~~~ 526 (764)
+..||.++||+.++++++.+.+|++++.++||.+...|+++++.++..+|++|.+++++++++.+.+.++.++|+||+||
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~p~~l~~~~~~~~p~~~~~~~~~l~~~~~~i~~~~~~~~hP~f~ 86 (490)
T PLN02880 7 LRPMDAEQLRECGHRMVDFIADYYKSIENFPVLSQVQPGYLRELLPDSAPNQPETLDQVLDDVQAKILPGVTHWQSPNYF 86 (490)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCHHHHHHhccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCee
Confidence 34599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHH
Q psy13453 527 AYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSIL 606 (764)
Q Consensus 527 ~~~~~~~~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~ 606 (764)
+|++++++++++++|++++.+|++++.|+.+|++++||+++++|+++++|+|++|.. .+.++|+||+|||+||++||+
T Consensus 87 ~~~~~~~~~~~~lad~l~~~~n~~~~~~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~--~~~~gG~~tsggs~anl~al~ 164 (490)
T PLN02880 87 AYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLNLPEQFLS--TGNGGGVIQGTASEAVLVVLL 164 (490)
T ss_pred EeccCCCcHHHHHHHHHHHhhccCCcccccCcccHHHHHHHHHHHHHHhCCCchhhc--CCCCceEEcCccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999987642 234789999999999999999
Q ss_pred HHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCC---ceEEEecCC--CCcccHHHHHHHHHHhhhc
Q psy13453 607 VAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDV---PVRQLRSDD--NGVLRGDALLTAVKEDLAK 681 (764)
Q Consensus 607 aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl---~v~~Vp~d~--~g~md~~~Le~~I~~~~~~ 681 (764)
+||++.....+.. ..++++||+|+++|||+.|||+++|+ +++.||+|+ +++||+++|+++|++++++
T Consensus 165 ~AR~~~~~~~g~~--------~~~~~vv~~S~~aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~ 236 (490)
T PLN02880 165 AARDRVLRKVGKN--------ALEKLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSS 236 (490)
T ss_pred HHHHHHHHHhccc--------ccCCeEEEEcCCchHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHC
Confidence 9999876543221 13578999999999999999999999 499999984 6899999999999999999
Q ss_pred CCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCce
Q psy13453 682 GLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCS 761 (764)
Q Consensus 682 G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g 761 (764)
|.+|++||+|+|||.+|++|||++|+++|++||+|+||||||||+++++++++++++|+++||||++|+||||++|++||
T Consensus 237 g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g 316 (490)
T PLN02880 237 GLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCS 316 (490)
T ss_pred CCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeC
Q psy13453 762 AMW 764 (764)
Q Consensus 762 ~l~ 764 (764)
++|
T Consensus 317 ~ll 319 (490)
T PLN02880 317 LLW 319 (490)
T ss_pred EEE
Confidence 986
|
|
| >KOG0629|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-62 Score=520.90 Aligned_cols=319 Identities=27% Similarity=0.396 Sum_probs=296.0
Q ss_pred CCcchhhhhhhhhhhcccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC--CCCCCCChhhHhhcCCCCCCCC
Q psy13453 421 HSENLITLIIASDLIINSIPLTKASPVTPPPNEEFREFGKAAIDFIADYVDNIRER--PVLPSVEPGYLASLVPGEMPEE 498 (764)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~y~~~~~~~--~v~~~~~p~~l~~~l~~~lP~~ 498 (764)
+.+++.+++.++|+| |.+.. ..+..+.++.++++.+.+|.....+| +|.++++|++|++.++.++|++
T Consensus 9 ~~~~~~~~~~~~D~L----~~~~~------~~~~te~fl~~v~~~ll~~v~~~~dr~~kv~~fhhP~~L~~l~nlel~~~ 78 (510)
T KOG0629|consen 9 QTDTNATNLEARDLL----PDDVA------GEEVTEPFLRAVVDILLDYVKKGFDRSQKVLDFHHPDELKELFNLELRDQ 78 (510)
T ss_pred cccchhhhhHhhhcc----ccccC------CchhhHhhhHHHHHHHHHhhccCCcccceeecccChHHHHHHhCcccCCC
Confidence 567889999999999 54321 12333888999999999997665444 8999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCCccccccCCCCChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCC
Q psy13453 499 GEDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLP 578 (764)
Q Consensus 499 g~~~~~il~~l~~~i~~~~~~~~~P~~~~~~~~~~~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p 578 (764)
+++.++|+.++++.++++.. ++|||||++++++.++.+++++|++++.|+|+++|+.+|++..||.+++..+.++.||+
T Consensus 79 ~esl~qil~~cr~tl~y~vK-TgHprffNQl~~glD~~~Lag~wlT~t~Ntn~~TYEiAPvF~lmE~~vl~km~~ivGw~ 157 (510)
T KOG0629|consen 79 PESLAQILEDCRDTLKYSVK-TGHPRFFNQLSSGLDPIGLAGEWLTSTANTNMFTYEIAPVFVLMEEEVLAKMREIVGWE 157 (510)
T ss_pred hhhHHHHHHHHHHHHHhhhc-cCCCcchhhhccCCCHHHHHHHHHHhccCCCCceEEecceEEeehHHHHHHHHHHhCCC
Confidence 99999999999999988875 99999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCC---ce
Q psy13453 579 EEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDV---PV 655 (764)
Q Consensus 579 ~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl---~v 655 (764)
.+ ++|+|++||+.||+||+.+||.+.+++.+..|- ...|++++|+|+++|||+.|||+++|+ +|
T Consensus 158 ~~--------~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm-----~~~p~lilFtSeesHYSi~kaAa~lg~gtd~c 224 (510)
T KOG0629|consen 158 EG--------GDGIFAPGGSISNMYAMNCARYKNFPEVKTKGM-----FALPPLILFTSEESHYSIKKAAAFLGLGTDHC 224 (510)
T ss_pred CC--------CCceecCCchhHHHHHHHHHHhhcCchhhhhhh-----hcCCcEEEEecccchhhHHHHHHHhccCCcee
Confidence 74 689999999999999999999999988766531 346799999999999999999999996 79
Q ss_pred EEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhh
Q psy13453 656 RQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAH 735 (764)
Q Consensus 656 ~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~ 735 (764)
+.|++|++|+|++++||+.|.+++++|..||+|.+|+|||+.|+||||+.|++||++|++|+||||||||+++++.++|+
T Consensus 225 ~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~lWmHvDAAwGGglLmS~k~R~ 304 (510)
T KOG0629|consen 225 IKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKLWMHVDAAWGGGLLMSRKHRH 304 (510)
T ss_pred EEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCEEEEeecccccccccChhhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 736 LKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 736 ~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
++.|+|+|||+||||||++++|.+||++
T Consensus 305 kl~Giera~SvtwnpHK~~gaplqCsa~ 332 (510)
T KOG0629|consen 305 KLTGIERANSVTWNPHKLMGAPLQCSAF 332 (510)
T ss_pred hccCccccCceeecHHHhhcCcchhhHH
Confidence 9999999999999999999999999975
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-60 Score=522.61 Aligned_cols=274 Identities=42% Similarity=0.760 Sum_probs=244.9
Q ss_pred hhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCccccccCCCCChHHHHHHHHHHhhcccCccccCCchHHHH
Q psy13453 484 PGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTEL 563 (764)
Q Consensus 484 p~~l~~~l~~~lP~~g~~~~~il~~l~~~i~~~~~~~~~P~~~~~~~~~~~~~~~lad~l~~~lN~n~~~~~~sp~~t~l 563 (764)
|++|++.++.++|++|++++++++++++.+.++..+|+||+||+|+++++++++++++++++.+|+|...|+.+|++++|
T Consensus 1 P~~l~~~~~~~lp~~~~~~~~vl~~~~~~l~~~~~~~~~P~~~~~~~~~~~~~~i~~~~l~~~~n~n~~~~~~~P~~~~~ 80 (373)
T PF00282_consen 1 PGELRARLDEELPEEGESLEEVLKDLREILAPGVTHWHHPRFFGFVPGGPSPASILADLLASALNQNGFTWEASPAATEI 80 (373)
T ss_dssp TTSSGGGCHCCHHSSHH-HHHHHHHHHHHTHGCS-TTTSTTBESSSHT--CHHHHHHHHHHHHHT-BTTSTTTSHHHHHH
T ss_pred ChhhhhcCccccccCCCCHHHHHHHHHHHhhccCCCCCChhHhhhccCCccHHHHHHHHHHhhhcccccccccccccccc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchh
Q psy13453 564 EVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSS 643 (764)
Q Consensus 564 E~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~S 643 (764)
|+++++|+++++|+|.++.. .+.++|+||+|||+||++|+++||+++.++.+.++.. ..+++++|+|+++|||
T Consensus 81 E~~vi~~l~~l~g~~~~~~~--~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~-----~~~~~~i~~s~~aH~S 153 (373)
T PF00282_consen 81 EREVIRWLADLFGLPESFTF--SKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVE-----EIPKPVIYVSEQAHYS 153 (373)
T ss_dssp HHHHHHHHHHHTTGSGGTTS--TTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTT-----HCSSEEEEEETTS-TH
T ss_pred hHHHHHHHHHHhCCcccccc--cCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccc-----cccccccccccccccH
Confidence 99999999999999976432 1237899999999999999999999988765544211 1457899999999999
Q ss_pred HHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccc
Q psy13453 644 VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAY 723 (764)
Q Consensus 644 v~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~ 723 (764)
+.|||+++|+.++.||+|++|+||+++|+++|+++.++|.+|++|++|+|||.+|+||||++|+++|++||+||||||||
T Consensus 154 ~~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlHVDaA~ 233 (373)
T PF00282_consen 154 IEKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWLHVDAAY 233 (373)
T ss_dssp HHHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEEEEETT
T ss_pred HHHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccccceeeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 724 AGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 724 Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
||+++++|++++++.|+++||||++|+||||++|++||+++
T Consensus 234 gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l 274 (373)
T PF00282_consen 234 GGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGCGVLL 274 (373)
T ss_dssp GGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEE
T ss_pred cccccccccccccccccccccccccchhhhhcCCccceeEE
Confidence 99999999999999999999999999999999999999985
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-53 Score=489.17 Aligned_cols=306 Identities=22% Similarity=0.284 Sum_probs=257.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh--cCCCCCCCCCChhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCccccccC
Q psy13453 453 EEFREFGKAAIDFIADYVDN--IRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPQFNAYFP 530 (764)
Q Consensus 453 ~~~~~~~~~~v~~i~~y~~~--~~~~~v~~~~~p~~l~~~l~~~lP~~g~~~~~il~~l~~~i~~~~~~~~~P~~~~~~~ 530 (764)
.++.++.+++.+.+++|+.+ ...+++.+.+.+.+. ...+|++|.+.+++++++.+.+.+++++|+||+||+|++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~hP~f~g~~~ 97 (522)
T TIGR03799 22 STLGRIEQKISQNLAGFLQEHIVAIEKPLSEIEKDFS----SAEIPEQPTFVSEHTQFLLDKLVAHSVHTASPSFIGHMT 97 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhccCCCchhhhhccc----ccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCeEEecc
Confidence 45667777777777777666 344566665443322 467899999999999999999999999999999999999
Q ss_pred CC-CChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCC-CccccC---CCCCCCcEEEeCChHHHHHHHH
Q psy13453 531 TG-SSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGL-PEEFLN---CSPGPGGGIIQSTASEATLVSI 605 (764)
Q Consensus 531 ~~-~~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~-p~~~~~---~~~~~~~GvfTsGgTeANl~Al 605 (764)
++ +.....+++ +.+++|+|.+.|+.||++++||+++++||+++++. ++.|.. ...+.++|+||+|||+||++||
T Consensus 98 ~~~p~~~~~l~~-l~~~lN~n~~~~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al 176 (522)
T TIGR03799 98 SALPYFMLPLSK-LMVALNQNLVKIETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITAL 176 (522)
T ss_pred CCCchHHHHHHH-HHHHhcCCcceeecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHH
Confidence 97 333344677 67789999999999999999999999999999963 332311 1123478999999999999999
Q ss_pred HHHHHHHhhhhccCCCCCcccc--------ccCceEEEecCCcchhHHHHHHhCCC---ceEEEecCCCCcccHHHHHHH
Q psy13453 606 LVAKRKMINHWQSKNPSLTEND--------IRNKLVAYTSDQSNSSVEKSAIIGDV---PVRQLRSDDNGVLRGDALLTA 674 (764)
Q Consensus 606 ~aAR~~~~~~~~~~~~~~~~~~--------~~~~~vi~~S~~aH~Sv~kAa~~lGl---~v~~Vp~d~~g~md~~~Le~~ 674 (764)
++||++.++..+.. .++...+ ..++++||+|+.+|+|+.|+++++|+ +++.||+|++|+||+++|+++
T Consensus 177 ~~AR~~~~~~~~~~-~~~~~~gl~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~~g~~d~~~L~~~ 255 (522)
T TIGR03799 177 WVARNRLLKADGDF-KGVAREGLFAALKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTDANNRIDVDALRDK 255 (522)
T ss_pred HHHHHHhccccccc-cccccccchhhhhhccCCceEEEECCCchHHHHHHHHHcCCCcccEEEEEeCCCCcCCHHHHHHH
Confidence 99999876542210 1111111 23578999999999999999999999 799999999999999999999
Q ss_pred HHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccC
Q psy13453 675 VKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWL 754 (764)
Q Consensus 675 I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l 754 (764)
|+++.++|.+|++|++|+|||++|++|||++|+++|++||+||||||||||+.+++++++++++|+++||||++|+||||
T Consensus 256 i~~~~~~g~~~~~vvataGtt~tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l 335 (522)
T TIGR03799 256 CAELAEQNIKPLAIVGVAGTTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQL 335 (522)
T ss_pred HHHHHHCCCCcEEEEEEecCcCCCCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCceeeC
Q psy13453 755 LVNFDCSAMW 764 (764)
Q Consensus 755 ~~P~~~g~l~ 764 (764)
++|++||++|
T Consensus 336 ~~P~g~G~ll 345 (522)
T TIGR03799 336 YVPMGAGMVL 345 (522)
T ss_pred CcCcccEEEE
Confidence 9999999985
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-53 Score=486.58 Aligned_cols=303 Identities=17% Similarity=0.221 Sum_probs=258.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCC-cccc
Q psy13453 449 PPPNEEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSP-QFNA 527 (764)
Q Consensus 449 ~~~~~~~~~~~~~~v~~i~~y~~~~~~~~v~~~~~p~~l~~~l~~~lP~~g~~~~~il~~l~~~i~~~~~~~~~P-~~~~ 527 (764)
..|.+.|++++.++++.+.++.++.... -.+..++.+++. ..+.+...+++++++++.+.+.+++++|+|| ||++
T Consensus 13 ~en~~~~~~~~~~~~~~~~~~r~~~~p~-d~~~~~~~~~~~---~~~~~~~~~~~~~l~~l~~~l~~~sv~~~~P~ry~g 88 (608)
T TIGR03811 13 AENGQLYKDLLNKLVDEHLGWRQNYMPQ-DKPVISPQERTS---KSFTKTVNNMKDVLDELSSRLRTESVPWHSAGRYWG 88 (608)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCCCHHHhcc---cccccCccCHHHHHHHHHHHHhcCCCCCCCccceEE
Confidence 4567889999999999999999883221 113456666555 3456667789999999999999999999999 9999
Q ss_pred ccCCCCChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHH
Q psy13453 528 YFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILV 607 (764)
Q Consensus 528 ~~~~~~~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~a 607 (764)
|+++++++++++|+++++.+|+|+..|+.||+++.||+++++||++++|+++ ++|+||+|||+||++||++
T Consensus 89 hm~~~~~~paila~~~a~~~N~n~~~~e~SP~~t~lE~~vi~~la~l~G~~~---------~~G~~TsGGT~ANl~aL~~ 159 (608)
T TIGR03811 89 HMNSETLMPAILAYNYAMLWNGNNVAYESSPATSQMEEEVGKEFATLMGYKN---------GWGHIVADGSLANLEGLWY 159 (608)
T ss_pred ECcCCCCHHHHHHHHHHHHhCCCCCccccCchHHHHHHHHHHHHHHHhCCCC---------CCeEEeCChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999986 5799999999999999999
Q ss_pred HHHHHh-h----hhcc------CCCCC----------------------cc-----ccccCce-EEEecCCcchhHHHHH
Q psy13453 608 AKRKMI-N----HWQS------KNPSL----------------------TE-----NDIRNKL-VAYTSDQSNSSVEKSA 648 (764)
Q Consensus 608 AR~~~~-~----~~~~------~~~~~----------------------~~-----~~~~~~~-vi~~S~~aH~Sv~kAa 648 (764)
||+.+. + ..+. .+++. .. +....++ ++++|+.+|||+.|||
T Consensus 160 AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa 239 (608)
T TIGR03811 160 ARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAA 239 (608)
T ss_pred HHHhhhccchhhhccccccccccchhhcccccccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHH
Confidence 999641 1 1000 00000 00 0011233 7999999999999999
Q ss_pred HhCCC---ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHH---HhcCC--EEEEe
Q psy13453 649 IIGDV---PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPIC---QEYNI--WLHVD 720 (764)
Q Consensus 649 ~~lGl---~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~---~~~gl--wLHVD 720 (764)
.++|+ +++.||+|+++|||+++|+++|+++.++|..|++||+|+|||.+|+||||++|+++| +++|+ |||||
T Consensus 240 ~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVD 319 (608)
T TIGR03811 240 DIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVD 319 (608)
T ss_pred HHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeee
Confidence 99999 599999999999999999999999999999999999999999999999999999999 67898 69999
Q ss_pred ccccccc--cc------------------------------cchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 721 AAYAGSA--LL------------------------------LPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 721 aA~Gg~~--l~------------------------------~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
|||||++ ++ ++++++.++|+++|||||+|+|||+++||+||+++
T Consensus 320 AAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll 395 (608)
T TIGR03811 320 AAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIV 395 (608)
T ss_pred ccccchhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcCcCceEEEeCcccccccCCCeEEEE
Confidence 9999975 22 24678899999999999999999999999999874
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-50 Score=460.38 Aligned_cols=257 Identities=28% Similarity=0.386 Sum_probs=232.5
Q ss_pred cccccc-ccccCCcceeeeeHHHHHhhcCCCCCCeEEecCC--CCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccc
Q psy13453 5 SLIPKL-AYPSETLSLLIYESFKATHSLSGTPDQVRLSGLP--DSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQ 80 (764)
Q Consensus 5 ~~~~~~-~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpvd--~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G 80 (764)
..+|++ +|+||+ .|||+.|||++|||+.++||.||+| ++++||+++|+++|++++++|++|++ |||||||.+|
T Consensus 225 ~~~~~~vvy~S~~---aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tG 301 (539)
T PLN02590 225 TLLPQLVVYGSDQ---THSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSA 301 (539)
T ss_pred cCCCCEEEEecCC---chHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCc
Confidence 346888 999999 8999999999999999999999999 46899999999999999999999999 6999999999
Q ss_pred cccCchhhhc-----CCCceeccc-------------------------------ccccc-ceeeeecCCCcccccccc-
Q psy13453 81 DIQSLNAPVS-----NGPLKVGGV-------------------------------LRRVY-SSCLVPRGQKSLRTTVLF- 122 (764)
Q Consensus 81 ~iDpi~~ia~-----~~wlHVDa~-------------------------------l~~~y-~s~ll~rd~~~l~~~~s~- 122 (764)
+||||++|++ ++|+||||+ ++.+| ||++++|++..+..+|+.
T Consensus 302 aiDpl~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~ 381 (539)
T PLN02590 302 AVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTN 381 (539)
T ss_pred ccCCHHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcC
Confidence 9999999997 999999993 34555 678999998665544332
Q ss_pred -------------ccccCCcccCCCCcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeE
Q psy13453 123 -------------HFLFQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLV 189 (764)
Q Consensus 123 -------------~~d~~d~tle~SRr~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV 189 (764)
.+|+.+|+++||||+++||+|++|++||++||+++|++++++|++|+++|+++|+||++.+|++++|
T Consensus 382 ~~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~l~iV 461 (539)
T PLN02590 382 PEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLV 461 (539)
T ss_pred HHHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceEEE
Confidence 2468899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 190 CFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 190 ~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
||||.|+... ++..|++|.+|.++|+++|.+|++.+.++|+.+||+|++||.|+++||+.+++.|.+.+++
T Consensus 462 cFr~~~~~~~---------~~~~~~ln~~l~~~l~~~G~~~vs~t~~~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~ 532 (539)
T PLN02590 462 CFRLAPVDGD---------EDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASK 532 (539)
T ss_pred EEEecCCCCC---------HHHHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999875321 1246889999999999999999999999999999999999999999999999999999988
Q ss_pred HHcc
Q psy13453 270 VLRG 273 (764)
Q Consensus 270 i~~~ 273 (764)
+-++
T Consensus 533 ~~~~ 536 (539)
T PLN02590 533 FTRN 536 (539)
T ss_pred hccc
Confidence 7544
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-46 Score=422.42 Aligned_cols=282 Identities=29% Similarity=0.339 Sum_probs=247.5
Q ss_pred HHHHHHhcCCCCCCCCCChhhHhhcCCCCCCCCCCCHHHHHHHHHHH-HcCCCCCCCCCccccccCCCCChHHHHHHHHH
Q psy13453 466 IADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTV-IMPGITHWQSPQFNAYFPTGSSYPSIVGDMLS 544 (764)
Q Consensus 466 i~~y~~~~~~~~v~~~~~p~~l~~~l~~~lP~~g~~~~~il~~l~~~-i~~~~~~~~~P~~~~~~~~~~~~~~~lad~l~ 544 (764)
+.++......+...+...|.+-.......+|+.+.+.++++.++... +.+...++.||+++.+..+.+.++.++++.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~p~~~v~~~l~~~~~~d~~~~~~~p~~~~~~~~~~~~~~~a~~~~~ 83 (460)
T COG0076 4 LIDKDMLNSKRYSGDSLSPLFGALSDSRMAPEKGEPLEEVLDELAELLIKDELYLDGHPRANLAGFCPTRVPPVAAELLV 83 (460)
T ss_pred HHHHHHhhccCCCccccccchhhhhhhccCCccCCchhhHHHHHHHHhhcccccccCCcceEEEccCCCCCHHHHHHHHH
Confidence 44454444455555555665555556678999999999999999998 55666667799999999999999999999999
Q ss_pred HhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCc
Q psy13453 545 GAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLT 624 (764)
Q Consensus 545 ~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~ 624 (764)
.++|+|.+.|+.+|+++++|+++++|+++|+|+|++ +.|+||+||||||++|+++||+++.+.....+ .
T Consensus 84 ~~~~~nl~d~~~~p~a~~~E~~~v~~l~~l~~~~~~--------~~G~~t~GgTean~lal~aar~~~~~~~~~~~--~- 152 (460)
T COG0076 84 SALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEE--------ASGTFTSGGTEANLLALLAARERWRKRALAES--G- 152 (460)
T ss_pred HHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCC--------CceEEEcChHHHHHHHHHHHHHHHHHHhhhcc--c-
Confidence 999999999999999999999999999999999865 68999999999999999999999875543210 0
Q ss_pred cccccCceEEEecCCcchhHHHHHHhCCCceEEEecCC-CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccH
Q psy13453 625 ENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNL 703 (764)
Q Consensus 625 ~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~-~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl 703 (764)
.....++||+|+.+|+|+.|||+++|+.++.||++. +++||+++|+++|.+++..| +||+|+|||.+|++|||
T Consensus 153 --~~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~~~~~~~id~~~l~~~i~~~t~~g----~vV~~aGtT~~G~iDdi 226 (460)
T COG0076 153 --KPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPTDYRIDVDALEEAIDENTIGG----VVVGTAGTTDTGSIDDI 226 (460)
T ss_pred --ccCCCCeEEecCcchhHHHHHHHHhCCCceeEEeccCccccCHHHHHHHHHhhccCc----eEEEEecCCCCCccCCH
Confidence 111234899999999999999999999999999987 89999999999999998877 89999999999999999
Q ss_pred HHHHHHHHhcCCEEEEeccccccccccchhhhh-hcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 704 EELGPICQEYNIWLHVDAAYAGSALLLPEYAHL-KRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 704 ~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~-l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
++|++||++|++||||||||||+.+++.+++.. ..++++||||++|+|||+++|++||+++
T Consensus 227 ~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il 288 (460)
T COG0076 227 EELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVL 288 (460)
T ss_pred HHHHHHHHHcCCcEEEEccccceeecccCccchhhcCCCCceEEEECcccccCCCCCceEEE
Confidence 999999999999999999999999988888877 6899999999999999999999999974
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-46 Score=415.96 Aligned_cols=230 Identities=18% Similarity=0.261 Sum_probs=208.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCccccccCCCCCh-HHHHHHHHHHhhcccCccccCCc---hHHHHHHHHHHHHHHHcCC
Q psy13453 502 WRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSY-PSIVGDMLSGAFGLIGFSWLSSP---ACTELEVLVMNWLGKALGL 577 (764)
Q Consensus 502 ~~~il~~l~~~i~~~~~~~~~P~~~~~~~~~~~~-~~~lad~l~~~lN~n~~~~~~sp---~~t~lE~~v~~~la~llG~ 577 (764)
++++|+++.+.+.++..+ ||+| +...++ ++.+++++...+|+.++.|..+| .+++||+++++|+++|+|+
T Consensus 75 ~~~~l~~~~~~~~~~~~~-----~~gY-p~n~~~d~s~l~~~l~~~~nN~Gdp~~~s~~~~~s~~~E~~Vi~wla~L~g~ 148 (470)
T PLN02263 75 MASVLARYRKTLVERTKH-----HLGY-PYNLDFDYGALGQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEI 148 (470)
T ss_pred HHHHHHHHHHHHHhcccc-----eeCC-CCcccCChhhHHHHHHhhccCCCCccccCCcchhHHHHHHHHHHHHHHHhCC
Confidence 699999999999887654 9999 777777 89999999999999999999999 7999999999999999999
Q ss_pred CccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEE
Q psy13453 578 PEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQ 657 (764)
Q Consensus 578 p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~ 657 (764)
|++ ..+|+||+||||||++|+++||+++ ++.++|+|+++|||+.|||+++|++++.
T Consensus 149 p~~-------~~~G~vtsGGTEaNL~Al~aARe~~-----------------~~~vvy~S~~aH~Sv~KAa~llgi~~~~ 204 (470)
T PLN02263 149 EKN-------EYWGYITNCGTEGNLHGILVGREVF-----------------PDGILYASRESHYSVFKAARMYRMECVK 204 (470)
T ss_pred CCC-------CCeEEEeCcHHHHHHHHHHHHHhhc-----------------CCcEEEEcCCccHHHHHHHHhcCCcceE
Confidence 862 2479999999999999999999963 1237999999999999999999999999
Q ss_pred EecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCC-----EEEEeccccccccccch
Q psy13453 658 LRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNI-----WLHVDAAYAGSALLLPE 732 (764)
Q Consensus 658 Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~gl-----wLHVDaA~Gg~~l~~~~ 732 (764)
||+|++|+||+++|+++|.++. .+|++|++|+|||.+|+||||++|+++|++||+ ||||||||||+++++-+
T Consensus 205 Vp~d~~g~mD~~aL~~aI~~d~---~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~ 281 (470)
T PLN02263 205 VDTLVSGEIDCADFKAKLLANK---DKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVK 281 (470)
T ss_pred eccCCCCcCcHHHHHHHHHhCC---CCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcc
Confidence 9999999999999999998764 479999999999999999999999999999997 99999999999886655
Q ss_pred hhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 733 YAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 733 ~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
....+++.+.||||++|+|||+++|++||+++
T Consensus 282 ~~~~~df~~~vDSIsvD~HK~l~~P~~cgvll 313 (470)
T PLN02263 282 RAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQI 313 (470)
T ss_pred cccccCCCcCccEEEECCccccCCCcCEEEEE
Confidence 55567787889999999999999999999985
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=422.34 Aligned_cols=254 Identities=32% Similarity=0.472 Sum_probs=227.9
Q ss_pred cccc-ccccCCcceeeeeHHHHHhhcCCCCCCeEEecCCC--CCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccc
Q psy13453 7 IPKL-AYPSETLSLLIYESFKATHSLSGTPDQVRLSGLPD--SEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDI 82 (764)
Q Consensus 7 ~~~~-~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpvd~--~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~i 82 (764)
.+++ +|+||+ .|||+.|||++|||+.++|+.||+|+ +++||+++|+++|++++++|++|++ |||||||++|++
T Consensus 179 ~~~~vv~~S~~---aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~Gai 255 (490)
T PLN02880 179 LEKLVVYASDQ---THSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAV 255 (490)
T ss_pred cCCeEEEEcCC---chHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCccc
Confidence 4666 999999 89999999999999999999999985 7899999999999999999999999 799999999999
Q ss_pred cCchhhhc-----CCCceeccc-------------------------------ccccc-ceeeeecCCCcccccccc---
Q psy13453 83 QSLNAPVS-----NGPLKVGGV-------------------------------LRRVY-SSCLVPRGQKSLRTTVLF--- 122 (764)
Q Consensus 83 Dpi~~ia~-----~~wlHVDa~-------------------------------l~~~y-~s~ll~rd~~~l~~~~s~--- 122 (764)
|||++|++ ++|+||||+ ++.+| |+++++|++..+...+..
T Consensus 256 Dpl~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~~~l~~~~~~~~~ 335 (490)
T PLN02880 256 DPLLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNPE 335 (490)
T ss_pred CcHHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeCHHHHHHHHccCHH
Confidence 99999997 999999993 34455 578888876554333322
Q ss_pred -----------ccccCCcccCCCCcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEE
Q psy13453 123 -----------HFLFQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCF 191 (764)
Q Consensus 123 -----------~~d~~d~tle~SRr~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~F 191 (764)
.+|+.+|++++|||+++||+|++|+++|++||++++++++++|+++++.|+++|+|+++.+|++++|||
T Consensus 336 Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~~~iv~F 415 (490)
T PLN02880 336 FLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVCF 415 (490)
T ss_pred HhcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEE
Confidence 246788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy13453 192 RLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVL 271 (764)
Q Consensus 192 ry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~ 271 (764)
||.|.... .+..|++|.++.++|+++|.+|++.+.++|+.+||+|+.||+|+++|++.+++.|+++++++.
T Consensus 416 r~~~~~~~---------~~~~~~~n~~l~~~l~~~g~~~v~~t~~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~~~ 486 (490)
T PLN02880 416 RLVPPKNN---------EDNGNKLNHDLLDAVNSSGKIFISHTVLSGKYVLRFAVGAPLTEERHVTAAWKVLQDEASKLL 486 (490)
T ss_pred EEeCCCCC---------hhhHHHHHHHHHHHHHhCCCEEEEEEEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99874321 224688999999999999999999999999999999999999999999999999999998875
Q ss_pred c
Q psy13453 272 R 272 (764)
Q Consensus 272 ~ 272 (764)
.
T Consensus 487 ~ 487 (490)
T PLN02880 487 G 487 (490)
T ss_pred H
Confidence 4
|
|
| >KOG0629|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=366.54 Aligned_cols=260 Identities=18% Similarity=0.210 Sum_probs=221.2
Q ss_pred ccccc-ccccCCcceeeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEE-EeeCCccccccc
Q psy13453 6 LIPKL-AYPSETLSLLIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCS-GYCGRTLHQDIQ 83 (764)
Q Consensus 6 ~~~~~-~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~V-atAGTT~~G~iD 83 (764)
-+|.| +|+||. +|||+.|||.+||+|.++++.|++|+.|+|++++||+.|-+++++|..|++| +|||||+.|++|
T Consensus 194 ~~p~lilFtSee---sHYSi~kaAa~lg~gtd~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFD 270 (510)
T KOG0629|consen 194 ALPPLILFTSEE---SHYSIKKAAAFLGLGTDHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFD 270 (510)
T ss_pred cCCcEEEEeccc---chhhHHHHHHHhccCCceeEEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccC
Confidence 47888 999999 8999999999999999999999999999999999999999999999999997 999999999999
Q ss_pred Cchhhhc-----CCCceeccccc--------------------------cc------cceeeeecCCCccccc-------
Q psy13453 84 SLNAPVS-----NGPLKVGGVLR--------------------------RV------YSSCLVPRGQKSLRTT------- 119 (764)
Q Consensus 84 pi~~ia~-----~~wlHVDa~l~--------------------------~~------y~s~ll~rd~~~l~~~------- 119 (764)
||+.+++ ++|+||||+++ |+ -||.++.|....|...
T Consensus 271 dL~~iadiC~k~~lWmHvDAAwGGglLmS~k~R~kl~Giera~SvtwnpHK~~gaplqCsa~l~r~~gll~~Cn~~~A~Y 350 (510)
T KOG0629|consen 271 DLNGIADICEKHKLWMHVDAAWGGGLLMSRKHRHKLTGIERANSVTWNPHKLMGAPLQCSAFLTREEGLLQRCNQMSAIY 350 (510)
T ss_pred cHHHHHHHHHhcCEEEEeecccccccccChhhHhhccCccccCceeecHHHhhcCcchhhHHHHHHHHHHHhhcccchhh
Confidence 9999998 99999999531 11 1444555543322211
Q ss_pred -------cccccccCCcccCCCCcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCC--CCceeEE
Q psy13453 120 -------VLFHFLFQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCP--PSMGLVC 190 (764)
Q Consensus 120 -------~s~~~d~~d~tle~SRr~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~--P~l~iV~ 190 (764)
|.+++|-+|.++||+|+.+++|+|++|+.-|.+||++.|++++++|+||.++|++.++++++.+ |++.+||
T Consensus 351 LFq~dK~YdvS~DTgdK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~~~pe~~nv~ 430 (510)
T KOG0629|consen 351 LFQQDKFYDVSYDTGDKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFEMLFELEPEHVNVC 430 (510)
T ss_pred hhccCceeecccccccchhhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccceehhcCCCceEEEe
Confidence 3346788999999999999999999999999999999999999999999999999999998875 8999999
Q ss_pred EEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCC-eeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 191 FRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQD-RLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 191 Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g-~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
|+|.|+..+...+.. .......++-..+..+|.++|..++++.++.. +.++|+++.||..+.+|++-+++.|+++++.
T Consensus 431 fw~vp~~lR~~~~~~-e~~~rL~kVaPkIK~~Mm~~Gt~Mi~YqPl~~~~nffr~v~sn~a~~~ad~dflldEIerlgq~ 509 (510)
T KOG0629|consen 431 FWYVPPSLRGWQENP-ERDSRLVKVAPKIKERMMKKGTTMIGYQPLGDKPNFFRMVISNPALTEADLDFLLDEIERLGQD 509 (510)
T ss_pred eccCchHhccCcccc-hhhhHHHhhCcHHHHHHHhccceeeEecccccccchhheecccchhhhhhHHHHHHHHHHhccC
Confidence 999998876532210 00111233346899999999999999988854 5799999999999999999999999998864
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=373.95 Aligned_cols=250 Identities=21% Similarity=0.201 Sum_probs=214.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCccccccCCCCChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHH
Q psy13453 493 GEMPEEGEDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLG 572 (764)
Q Consensus 493 ~~lP~~g~~~~~il~~l~~~i~~~~~~~~~P~~~~~~~~~~~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la 572 (764)
.++|++|.+.+++++++.+.+.. .+..||+|++|+++++.+. +.+++..++|+|.+.+..+|..+++|+++++|++
T Consensus 15 ~~~p~~~~~~~~~~~~~~~~iyl--d~~a~~~~~~~~tt~~~p~--~~~~~~~~l~~~~~np~s~~~~~~le~~~~~~la 90 (431)
T TIGR01788 15 YRMPEEEMPPDAAYQLIHDELSL--DGNPRLNLATFVTTWMEPE--ARKLMDETINKNMIDKDEYPQTAEIENRCVNMLA 90 (431)
T ss_pred ccCCCCCCCHHHHHHHHHHHhhh--cCCcceeeeeeeCCCCCHH--HHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHH
Confidence 57999999999999999987653 4567899999998876655 6889999999998899999999999999999999
Q ss_pred HHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCC
Q psy13453 573 KALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGD 652 (764)
Q Consensus 573 ~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lG 652 (764)
+++|+++. .+..+|+||+||||||++|+.++|+++..+.+..+. ...+.+||+|+++|+|+.|+++++|
T Consensus 91 ~llg~~~~-----~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~------~~~~~~ii~s~~~H~sv~ka~~~lg 159 (431)
T TIGR01788 91 DLWHAPAK-----DAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGK------PTDKPNLVMGSNVQVCWEKFARYFD 159 (431)
T ss_pred HHhCCCCC-----CCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCC------CCCCcEEEEcCcchHHHHHHHHHcC
Confidence 99999821 012578889999999999999998764332211110 1124689999999999999999999
Q ss_pred CceEEEecCCC-CcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhc------CCEEEEeccccc
Q psy13453 653 VPVRQLRSDDN-GVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEY------NIWLHVDAAYAG 725 (764)
Q Consensus 653 l~v~~Vp~d~~-g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~------glwLHVDaA~Gg 725 (764)
++++.||+|++ ++||+++|+++|+++ +++|++|+|||++|++|||++|+++|+++ |+|+||||||||
T Consensus 160 ~~v~~i~~d~~~~~vd~~~L~~~i~~~------t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g 233 (431)
T TIGR01788 160 VELREVPMDPGRYVIDPEQVVEAVDEN------TIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGG 233 (431)
T ss_pred ceeEEEecCCCceeeCHHHHHHHHhhC------CeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHH
Confidence 99999999976 699999999999865 67999999999999999999999999999 999999999999
Q ss_pred ccc--ccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 726 SAL--LLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 726 ~~l--~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
+++ .+++.+..++ +++|||+++|+|||+++|+|||+||
T Consensus 234 ~~~p~~~~~~~~~~~-~~~~DSis~s~HK~~~~P~g~G~l~ 273 (431)
T TIGR01788 234 FIAPFVYPDLEWDFR-LPRVKSINVSGHKYGLVYPGVGWVI 273 (431)
T ss_pred HHHHHhCCCchhhcC-CCCceEEEECchhccCCCCCcEEEE
Confidence 875 3566676665 7889999999999999999999986
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=384.73 Aligned_cols=254 Identities=19% Similarity=0.180 Sum_probs=218.3
Q ss_pred ccc-ccccCCcceeeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccCc
Q psy13453 8 PKL-AYPSETLSLLIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQSL 85 (764)
Q Consensus 8 ~~~-~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDpi 85 (764)
+++ +|+|++ .|||+.|||++||+|.++|+.||+|++|+||+++|+++|+++.++|..|++ |+|+|||.+|++|||
T Consensus 208 ~~~~v~~S~~---~H~S~~kaa~~lglg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl 284 (522)
T TIGR03799 208 DGLAILVSER---GHYSLGKAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPL 284 (522)
T ss_pred CceEEEECCC---chHHHHHHHHHcCCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCH
Confidence 455 899999 899999999999999999999999999999999999999999999988988 699999999999999
Q ss_pred hhhhc-----CCCceeccc-------------------------------ccccc-ceeeeecCCCcccccccc------
Q psy13453 86 NAPVS-----NGPLKVGGV-------------------------------LRRVY-SSCLVPRGQKSLRTTVLF------ 122 (764)
Q Consensus 86 ~~ia~-----~~wlHVDa~-------------------------------l~~~y-~s~ll~rd~~~l~~~~s~------ 122 (764)
++|++ ++|+||||+ ++.++ |+++++|++..+. ++..
T Consensus 285 ~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~llvr~~~~~~-~~~~~~~Yl~ 363 (522)
T TIGR03799 285 DEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVLFKDPALMS-AIEHHAEYIL 363 (522)
T ss_pred HHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcccEEEEEeCHHHHH-HhccCcchhc
Confidence 99997 899999993 23344 4788888875432 2222
Q ss_pred ---ccccCCcccCCCCcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccc
Q psy13453 123 ---HFLFQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWD 199 (764)
Q Consensus 123 ---~~d~~d~tle~SRr~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~ 199 (764)
..|++++++||||+++++|+|++|+++|++||++++++++++|++|++.|++.|+|+++++|++++|||||.|+...
T Consensus 364 ~~~~~d~~~~~legsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~p~l~iv~Fr~~p~~~~ 443 (522)
T TIGR03799 364 RKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDFELVTEPELCLLTYRYVPEEVQ 443 (522)
T ss_pred CCCCCccccceeecCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEecCCCccEEEEEEeChhhc
Confidence 23567899999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred ccc-----ccccCccCCccHHHHHHHHHHHhcCcEEEEeceeC-------CeeEEEEeccCCCCCHHHHHHHHHHHHH
Q psy13453 200 KLD-----NLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQ-------DRLFMRFAICSSQTEESDVQLGWNEIRT 265 (764)
Q Consensus 200 ~~~-----~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~-------g~~~LRi~v~np~Tt~e~i~~~l~~l~~ 265 (764)
..- +......+..|++|.+|+++|+++|.+|++.|.++ +..+||+|++||.|+++|++.++++.++
T Consensus 444 ~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~lR~~~~np~tt~~~i~~~l~~~~~ 521 (522)
T TIGR03799 444 QALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVFRVVLANPLTTHEILQDILDEQRE 521 (522)
T ss_pred ccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEEEEEEecCCCCCHHHHHHHHHHhhc
Confidence 210 00011112358899999999999999999999886 4589999999999999999999988764
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >KOG0628|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=339.88 Aligned_cols=248 Identities=35% Similarity=0.519 Sum_probs=230.2
Q ss_pred ccccccc-ccccCCcceeeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCccccc
Q psy13453 4 RSLIPKL-AYPSETLSLLIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQD 81 (764)
Q Consensus 4 ~~~~~~~-~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~ 81 (764)
++++.+| +|+|+| +|=|++|||.+-|++. |.+|+|+++.|+.+.|+++|++|+++|.+||+ +||.|||..=+
T Consensus 177 ~~~~~~lV~Y~SDq---ahssveka~~i~~Vkl---R~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~ca 250 (511)
T KOG0628|consen 177 SSVLARLVAYCSDQ---AHSSVEKACLIAGVKL---RALPTDENFGMRGDTLRKAIEEDIARGLIPFFVCATLGTTSSCA 250 (511)
T ss_pred hhhhhhheEEecCc---ccchHHHhHhhcceeE---EEeecccCcCCCHHHHHHHHHHHHhCCCccEEEEEeecCccccc
Confidence 3577888 999999 8999999999999997 99999999999999999999999999999999 69999999999
Q ss_pred ccCchhhhc-----CCCceecccc--------------------------------ccccceeeeecCCCccccccccc-
Q psy13453 82 IQSLNAPVS-----NGPLKVGGVL--------------------------------RRVYSSCLVPRGQKSLRTTVLFH- 123 (764)
Q Consensus 82 iDpi~~ia~-----~~wlHVDa~l--------------------------------~~~y~s~ll~rd~~~l~~~~s~~- 123 (764)
+|+|+++.. ++|+||||+- .+..||.+++||+..+..+|+++
T Consensus 251 ~D~l~elg~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~~vdp 330 (511)
T KOG0628|consen 251 FDELEELGPVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSRAFNVDP 330 (511)
T ss_pred cccHHHhcchhhhcCEEEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCceeeeeeecCh
Confidence 999999875 9999999931 12247889999998887777653
Q ss_pred -----------cccCCcccCCCCcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEE
Q psy13453 124 -----------FLFQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFR 192 (764)
Q Consensus 124 -----------~d~~d~tle~SRr~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fr 192 (764)
.||..|.|..|||+|+||+|+++|.||.+++++.+++.+++|+.|.+.+.+.+.||++++..+.+||||
T Consensus 331 ~yL~h~~~~~~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~~~lgLvcFR 410 (511)
T KOG0628|consen 331 LYLKHAYQGSAPDYRHWQIPLGRRFRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRFEIVNKRILGLVCFR 410 (511)
T ss_pred HhhcchhhccCCCccccccccccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeecccccceeEEe
Confidence 579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHc
Q psy13453 193 LKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLR 272 (764)
Q Consensus 193 y~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~ 272 (764)
.. +.|++|.+|.++++.+|..+++.+.++|+++||+||+.|.|+.+|++..++.|.+.+..+..
T Consensus 411 lk----------------~~N~~ne~Ll~~in~~g~i~l~~~~l~gk~vlRf~V~s~~t~~~di~~a~~~I~~~a~~l~~ 474 (511)
T KOG0628|consen 411 LK----------------GDNEINEALLNRLNSSGRIHLVPASLHGKFVLRFAVCSPLTNESDIDEAWKIIFEAADELFE 474 (511)
T ss_pred ec----------------CCcHHHHHHHHHHHhcCcEEEEEeeecceEEEEEEecCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 76 45889999999999999999999999999999999999999999999999999999988765
Q ss_pred c
Q psy13453 273 G 273 (764)
Q Consensus 273 ~ 273 (764)
.
T Consensus 475 ~ 475 (511)
T KOG0628|consen 475 A 475 (511)
T ss_pred h
Confidence 4
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=342.15 Aligned_cols=231 Identities=20% Similarity=0.248 Sum_probs=190.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCccccccCCCCChHHHHHHHHHHhhcccCcccc---CCchHHHHHHHHHHHHHHHcCCC
Q psy13453 502 WRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWL---SSPACTELEVLVMNWLGKALGLP 578 (764)
Q Consensus 502 ~~~il~~l~~~i~~~~~~~~~P~~~~~~~~~~~~~~~lad~l~~~lN~n~~~~~---~sp~~t~lE~~v~~~la~llG~p 578 (764)
..++++.+.+.+. -++..|.||......-.+.+..++....|+.+..+. .+..+.++|+++++|+++++|++
T Consensus 8 ~~~~~~~~~~~~~-----~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~ 82 (374)
T PLN03032 8 MADILASYDKLLA-----EKSSVHFGYPYNLDFDYGELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELE 82 (374)
T ss_pred HHHHHHHHHHHHH-----HhhhhccCCCchhccChHHHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhCCC
Confidence 4566777777653 445788899877665557777777766554333333 34479999999999999999997
Q ss_pred ccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEE
Q psy13453 579 EEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQL 658 (764)
Q Consensus 579 ~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~V 658 (764)
++ ..+|+||+||||||++|+++||+.. + +.++|+|+.+|+|+.|+++++|+.++.|
T Consensus 83 ~~-------~~~G~fTsGGTEaNl~al~~ar~~~-~----------------~~~vi~s~~~H~Sv~kaa~~lg~~~~~V 138 (374)
T PLN03032 83 KD-------EYWGYITTCGTEGNLHGILVGREVF-P----------------DGILYASRESHYSVFKAARMYRMEAVKV 138 (374)
T ss_pred Cc-------cCCEEEeCchHHHHHHHHHHHHHhC-C----------------CcEEEeCCCceeHHHHHHHHcCCCCeEe
Confidence 63 2469999999999999999998752 1 1268999999999999999999999999
Q ss_pred ecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcC-----CEEEEeccccccccccchh
Q psy13453 659 RSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYN-----IWLHVDAAYAGSALLLPEY 733 (764)
Q Consensus 659 p~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~g-----lwLHVDaA~Gg~~l~~~~~ 733 (764)
|+|++|+||+++|+++|+++. ..|++|++|+|||++|++|||++|+++|++|| +||||||||||+.++....
T Consensus 139 ~~d~~g~id~~~L~~~i~~~~---~~~~lvv~tagtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~ 215 (374)
T PLN03032 139 PTLPSGEIDYDDLERALAKNR---DKPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSR 215 (374)
T ss_pred eeCCCCcCcHHHHHHHHHHcC---CCCEEEEEEecCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCC
Confidence 999999999999999998753 36899999999999999999999999999996 5999999999988765333
Q ss_pred hhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 734 AHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 734 r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
...++..+.+|||++|+|||+++|++||++|
T Consensus 216 ~~~~~~~~~vDSis~s~HK~~g~P~g~G~ll 246 (374)
T PLN03032 216 APEVTFRKPIGSVSVSGHKFLGCPMPCGVAL 246 (374)
T ss_pred CcccCCCcCCcEEEECcccccCCCcCeEEEE
Confidence 3334444578999999999999999999985
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=342.85 Aligned_cols=228 Identities=24% Similarity=0.316 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHcCCCCCCCCCccccccCCCCCh-HHHHHHHHHHhhcccCccccCCc----hHHHHHHHHHHHHHHHcCC
Q psy13453 503 RHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSY-PSIVGDMLSGAFGLIGFSWLSSP----ACTELEVLVMNWLGKALGL 577 (764)
Q Consensus 503 ~~il~~l~~~i~~~~~~~~~P~~~~~~~~~~~~-~~~lad~l~~~lN~n~~~~~~sp----~~t~lE~~v~~~la~llG~ 577 (764)
.+.|+++...+ -+||+||.+++...++ .+.+.+++....|+.+ .+...+ .+.++|+++++|+++++|+
T Consensus 8 ~~~~~~~~~~~------~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~n~g-np~~~~~~g~~~~~~e~~~~~~~a~l~g~ 80 (380)
T PRK02769 8 QKEIEDFWLYL------RHNQYFNVGYPEAADFDYSALKRFFSFSINNCG-DPYSKSNYPLNSFDFERDVMNFFAELFKI 80 (380)
T ss_pred HHHHHHHHHHH------HHhhhcccCCCchhhcCHHHHHHHHHhhhccCC-CccccCCCCCChHHHHHHHHHHHHHHhCC
Confidence 45566665554 4588888888887776 6889999988887644 444444 4899999999999999999
Q ss_pred CccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEE
Q psy13453 578 PEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQ 657 (764)
Q Consensus 578 p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~ 657 (764)
+++ ..+|+||+||||||++|+++||++. + +.+||+|+.+|+|+.|+++++|+..+.
T Consensus 81 ~~~-------~~~G~~TsGgTean~~a~~~ar~~~-~----------------~~~ii~s~~~H~Sv~ka~~~lg~~~~~ 136 (380)
T PRK02769 81 PFN-------ESWGYITNGGTEGNLYGCYLARELF-P----------------DGTLYYSKDTHYSVSKIARLLRIKSRV 136 (380)
T ss_pred CCC-------CCCEEEecChHHHHHHHHHHHHHhC-C----------------CcEEEeCCCceehHHHHHHHcCCCCce
Confidence 753 2469999999999999999998742 1 237999999999999999999999999
Q ss_pred EecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcC---CEEEEeccccccccccchhh
Q psy13453 658 LRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYN---IWLHVDAAYAGSALLLPEYA 734 (764)
Q Consensus 658 Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~g---lwLHVDaA~Gg~~l~~~~~r 734 (764)
||++++|+||+++|+++|+++ |..|++|++|+|||++|++|||++|+++|++|| +|+|||||||++.+++.+.+
T Consensus 137 V~~~~~g~id~~~L~~~i~~~---~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~ 213 (380)
T PRK02769 137 ITSLPNGEIDYDDLISKIKEN---KNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNP 213 (380)
T ss_pred eccCCCCcCcHHHHHHHHHhC---CCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEecccceeecccCcc
Confidence 999999999999999999876 678999999999999999999999999999998 69999999999988776555
Q ss_pred hhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 735 HLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 735 ~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
..++..+.+||+++|+|||+++|++||++|
T Consensus 214 ~~~d~~~~vDsis~s~HK~~~~P~g~G~l~ 243 (380)
T PRK02769 214 PPFSFADGIDSIAISGHKFIGSPMPCGIVL 243 (380)
T ss_pred ccCCccCCCCEEEECCcccCCCCCCcEEEE
Confidence 555555578999999999999999999985
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=342.69 Aligned_cols=182 Identities=33% Similarity=0.460 Sum_probs=159.3
Q ss_pred cccc-ccccCCcceeeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccC
Q psy13453 7 IPKL-AYPSETLSLLIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQS 84 (764)
Q Consensus 7 ~~~~-~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDp 84 (764)
++++ +|+||+ .|||+.|||++|||+ ++.||+|++++||+++|+++|+++.++|++|++ |+|+|||.+|++||
T Consensus 139 ~~~~~i~~s~~---aH~S~~Kaa~~lGlg---~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~ 212 (373)
T PF00282_consen 139 IPKPVIYVSEQ---AHYSIEKAARILGLG---VRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDP 212 (373)
T ss_dssp CSSEEEEEETT---S-THHHHHHHHTTSE---EEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-S
T ss_pred ccccccccccc---cccHHHHhcceeeeE---EEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccC
Confidence 4566 999999 899999999999999 599999999999999999999999999999977 79999999999999
Q ss_pred chhhhc-----CCCceeccc-------------------------------ccccc-ceeeeecCCCccccccccc----
Q psy13453 85 LNAPVS-----NGPLKVGGV-------------------------------LRRVY-SSCLVPRGQKSLRTTVLFH---- 123 (764)
Q Consensus 85 i~~ia~-----~~wlHVDa~-------------------------------l~~~y-~s~ll~rd~~~l~~~~s~~---- 123 (764)
|++|++ ++|+||||+ ++.+| ||++++|++..+..+++.+
T Consensus 213 l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~~~~l~~~~~~~~~Yl 292 (373)
T PF00282_consen 213 LEEIADICEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGCGVLLVRDKSDLRDAFSINADYL 292 (373)
T ss_dssp HHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEEESSGGGHHGGGEEEETCT
T ss_pred HHHHhhhccccceeeeecccccccccccccccccccccccccccccchhhhhcCCccceeEEeecccchHHHhccChhhh
Confidence 999987 999999983 23445 5789999998887765433
Q ss_pred ----------cccCCcccCCCCcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEe
Q psy13453 124 ----------FLFQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRL 193 (764)
Q Consensus 124 ----------~d~~d~tle~SRr~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry 193 (764)
+++.++|++||||+++||+|++|+++|++||+++|++++++|++|++.|++.++||++++|++++|||||
T Consensus 293 ~~~~~~~~~~~~~~~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~~~~~~vcFr~ 372 (373)
T PF00282_consen 293 GNDDRESDESYDYGDYTLQGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVNEPDLNIVCFRY 372 (373)
T ss_dssp T-S-SSS-GGGCEEEGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSTTSSSEEEEEE
T ss_pred cccccccccccccccccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCceEEEEEe
Confidence 3466789999999999999999999999999999999999999999999999999999999999999998
Q ss_pred e
Q psy13453 194 K 194 (764)
Q Consensus 194 ~ 194 (764)
+
T Consensus 373 k 373 (373)
T PF00282_consen 373 K 373 (373)
T ss_dssp S
T ss_pred C
Confidence 4
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >KOG1383|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=329.44 Aligned_cols=254 Identities=18% Similarity=0.199 Sum_probs=229.6
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCC-CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc------CC
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLP-DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS------NG 92 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd-~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~------~~ 92 (764)
.|=++.|+|+++++.. +.||++ .+++||+.++.+.|++|+ .++|+++|+|++|.+||++++++ ++
T Consensus 179 v~~a~eK~a~yf~v~l---~~V~~~~~~~~~D~~k~~~~i~eNt-----i~lv~~~~~~p~G~~e~ve~l~~l~~e~w~i 250 (491)
T KOG1383|consen 179 VHAAFEKAARYFEVEL---REVPLDEGDYRVDPGKVVRMIDENT-----IMLVGSLPNFPTGEIEDVEKLADLLLEIWDI 250 (491)
T ss_pred HHHHHHHHHhhEEEEE---EeeeccccceEecHHHHHHHhccce-----EEEEEEcCCCCccchhhHHHHHHHHHHHhCC
Confidence 5678999999999999 999999 799999999999999973 24489999999999999999997 78
Q ss_pred Cceecccc----------------------------ccccc------eeeeecCCCccccccccccc-----cCCcccCC
Q psy13453 93 PLKVGGVL----------------------------RRVYS------SCLVPRGQKSLRTTVLFHFL-----FQHWQIPL 133 (764)
Q Consensus 93 wlHVDa~l----------------------------~~~y~------s~ll~rd~~~l~~~~s~~~d-----~~d~tle~ 133 (764)
++|||||+ .|+|+ +.+++|+++.++++|.++.| |.++|+++
T Consensus 251 piHvDa~~GgFi~p~~~~~~~~fdFr~p~V~Sisa~~HKYGl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~Tlng 330 (491)
T KOG1383|consen 251 PIHVDACLGGFINPAGYLNEEEFDFRVPGVTSISADGHKYGLAPAGSSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNG 330 (491)
T ss_pred ceeecccCccccccccccCccccccCCCCceeEeeccceeeeeecCcEEEEEcccccccceEEEeccccCccccCccccc
Confidence 89999974 45664 68999999999999888765 78999999
Q ss_pred CC-cccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCc
Q psy13453 134 GR-RFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGD 212 (764)
Q Consensus 134 SR-r~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~ 212 (764)
|| ++..+..|++|.+||.+||++..++|++++++|++.|+++++|.++++|.++++.| +.
T Consensus 331 SR~g~~va~~wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i~~i~i~gkp~vs~~~~-------------------~s 391 (491)
T KOG1383|consen 331 SRPGSQVAAQWAALMSLGEEGYRENTQNIVETARKLREGIENIKGIKIVGKPLVSFILF-------------------GS 391 (491)
T ss_pred CCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhccccceecCCCcEEEEEc-------------------cC
Confidence 99 66666889999999999999999999999999999999999999999999999999 44
Q ss_pred cHHH-HHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCCCcccCccchhhc
Q psy13453 213 NDLN-KAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLRGKSLGPAGKVMGGAQAIAG 291 (764)
Q Consensus 213 d~~n-~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~~~~~~~~~~~~~~~~a~~g 291 (764)
+.+| .++.+.|++.|| ..+.+|.+..+|+||+..+++++.+++|+.+|+++.++|...+.....++ +|+||
T Consensus 392 ~~~~i~elsd~l~~~GW---~lnalq~P~a~Hi~vt~~~~~~~~A~~~v~Di~~~~~el~~~p~~~~~~~-----~a~yg 463 (491)
T KOG1383|consen 392 NDVNIFELSDLLRKKGW---ILNALQFPAAIHICVTRVHAREDVADRFVADIRKVVEELKSLPESKTHGM-----AAIYG 463 (491)
T ss_pred CccchhhhhHHHHhcCc---CccccCCCCceEEEEEeeeccHHHHHHHHHHHHHHHHHHHhCCCcccCcc-----cchhh
Confidence 5577 799999999999 88999999999999999999999999999999999999999886544444 99999
Q ss_pred cccCCCcchhhcccccc
Q psy13453 292 TESSGPADQVLGEIQPV 308 (764)
Q Consensus 292 ~~~~~pd~~~~~~~~~~ 308 (764)
+|++.|||+++.|+.-.
T Consensus 464 ~a~~~~~~~~~~e~~~~ 480 (491)
T KOG1383|consen 464 LAQKTPDRSVVDELIVG 480 (491)
T ss_pred hhhcCCchhhHHHHHHH
Confidence 99999999999997643
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=346.34 Aligned_cols=249 Identities=17% Similarity=0.221 Sum_probs=204.7
Q ss_pred ccccCCcceeeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccCchhhh
Q psy13453 11 AYPSETLSLLIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQSLNAPV 89 (764)
Q Consensus 11 ~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDpi~~ia 89 (764)
.|.|++ .|||+.|||++||||.++|+.||+|+++|||+++|+++|+++.++|..|++ |||+|||.+|+||||++|+
T Consensus 225 vl~s~~---aHyS~~KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~ 301 (608)
T TIGR03811 225 WLVPQT---KHYSWLKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIV 301 (608)
T ss_pred EEECCC---ccHHHHHHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHH
Confidence 788888 899999999999999999999999999999999999999999999988877 7999999999999999986
Q ss_pred c--------CC--Cceecccc-----------------------------------------------------------
Q psy13453 90 S--------NG--PLKVGGVL----------------------------------------------------------- 100 (764)
Q Consensus 90 ~--------~~--wlHVDa~l----------------------------------------------------------- 100 (764)
+ ++ |+||||+.
T Consensus 302 ~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDp 381 (608)
T TIGR03811 302 ALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDP 381 (608)
T ss_pred HHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcCcCceEEEeCc
Confidence 5 55 69999932
Q ss_pred ----cccc-ceeeeecCCCcccccccccc------------ccCCcccCCCC-cccHHHHHHHHHHc--cHHHHHHHHHH
Q psy13453 101 ----RRVY-SSCLVPRGQKSLRTTVLFHF------------LFQHWQIPLGR-RFRALKLWMTLRSY--GLKGLQAYLRK 160 (764)
Q Consensus 101 ----~~~y-~s~ll~rd~~~l~~~~s~~~------------d~~d~tle~SR-r~~ALklWatL~~l--G~eGy~~~i~~ 160 (764)
+.+| ||.+++|+++ +...++.+. ++++++++||| +++|+|+|++++.+ |++||++++++
T Consensus 382 HK~g~~Py~~G~ll~Rd~~-~~~~~~~~a~Yl~~~~~~~p~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~ 460 (608)
T TIGR03811 382 HKMGYIPYSAGGIVIQDIR-MRDVISYFATYVFEKGADIPALLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKLIGA 460 (608)
T ss_pred ccccccCCCeEEEEEeCHH-HHHHHhcCcchhccccccCcccccccceecCCccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 1123 3678889875 333222211 24568999999 68899999999998 99999999999
Q ss_pred HHHHHHHHHHHHhc------CCCeEE--eCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHH-h-----c
Q psy13453 161 HISLAKKFADLVEQ------DDRFEL--VCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRII-A-----R 226 (764)
Q Consensus 161 ~i~lA~~l~~~I~~------~p~~el--l~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~-~-----~ 226 (764)
++++|++|++.|++ .++||+ +.+|++++|||||.|++... .+..|++|.++.+++. . .
T Consensus 461 ~i~~A~~~~~~L~~~~~~~~~~~~el~~~~~pdlniV~Fr~~~~g~~~--------l~~~n~ln~~i~~~~~~~~g~~~~ 532 (608)
T TIGR03811 461 SIEGAHRFYDFLNNLEFKVGDKEIEVHPLTKPDFNMVDYVFNEKGNDD--------LVKMNKLNHAFYDYASYVKGSIYN 532 (608)
T ss_pred HHHHHHHHHHHHHhcccccCCCCeeEEecCCCCcceEEEEEecCCCcc--------HHHHHHHHHHHHHhhccccCCCCC
Confidence 99999999999999 677887 89999999999999865321 1247889999999988 2 2
Q ss_pred CcEEEEeceeC--------------------------CeeEEEEeccCCCCCH-HHHHHHHHHHHHHHHHHH
Q psy13453 227 KVIYIVKGSFQ--------------------------DRLFMRFAICSSQTEE-SDVQLGWNEIRTATEEVL 271 (764)
Q Consensus 227 G~~~vs~t~l~--------------------------g~~~LRi~v~np~Tt~-e~i~~~l~~l~~~~~~i~ 271 (764)
-.+++|.|.+. ..++||.|++||..+. +.++.+++.+++..++.+
T Consensus 533 ~~~~~s~t~~~~~~yg~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~m~p~~~~~~~~~~~~~~~~~~~~~~~ 604 (608)
T TIGR03811 533 NEFITSHTDFAIPDYGDSPFAFVNSLGFSDEEWQRAGKVTILRASVMTPYMNDKENFDEYAPKIKAAMQEKL 604 (608)
T ss_pred cceEeeecccccchhhhhHHHHHHHcCCChhhhccCCceEEEEEEecCcccCChhhHHHHHHHHHHHHHHHH
Confidence 33566666442 2579999999998654 888888888888776544
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=315.03 Aligned_cols=224 Identities=15% Similarity=0.119 Sum_probs=182.5
Q ss_pred ccccccc-ccccCCcceeeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCccccc
Q psy13453 4 RSLIPKL-AYPSETLSLLIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQD 81 (764)
Q Consensus 4 ~~~~~~~-~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~ 81 (764)
|...|.. +|.||+ .|||+.|||++|||+. ++||+|++|+||+++|+++|++++ .+|++ |+|+|||++|+
T Consensus 173 Re~~~~~vvy~S~~---aH~Sv~KAa~llgi~~---~~Vp~d~~g~mD~~aL~~aI~~d~---~~P~iVvataGTT~~GA 243 (470)
T PLN02263 173 REVFPDGILYASRE---SHYSVFKAARMYRMEC---VKVDTLVSGEIDCADFKAKLLANK---DKPAIINVNIGTTVKGA 243 (470)
T ss_pred HhhcCCcEEEEcCC---ccHHHHHHHHhcCCcc---eEeccCCCCcCcHHHHHHHHHhCC---CCcEEEEEEecCCCCcC
Confidence 3445654 899999 8999999999999976 999999999999999999998864 36888 69999999999
Q ss_pred ccCchhhhc-----CC-----Cceecccc-------------------------------cccc-ceeeeecCCCccccc
Q psy13453 82 IQSLNAPVS-----NG-----PLKVGGVL-------------------------------RRVY-SSCLVPRGQKSLRTT 119 (764)
Q Consensus 82 iDpi~~ia~-----~~-----wlHVDa~l-------------------------------~~~y-~s~ll~rd~~~l~~~ 119 (764)
||||++|++ ++ |+||||++ +.++ ||++++|++. + .+
T Consensus 244 iDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~~df~~~vDSIsvD~HK~l~~P~~cgvll~R~~~-~-~~ 321 (470)
T PLN02263 244 VDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRMEH-I-NV 321 (470)
T ss_pred CCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccccccCCCcCccEEEECCccccCCCcCEEEEEEehhh-H-hh
Confidence 999999987 54 99999953 2233 5788998643 2 33
Q ss_pred cccccc---cCCcccCCCCcc-cHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeec
Q psy13453 120 VLFHFL---FQHWQIPLGRRF-RALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKV 195 (764)
Q Consensus 120 ~s~~~d---~~d~tle~SRr~-~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P 195 (764)
++...+ ..++|++|||++ .++|+|++|+++|++||++++++++++|++|++.|+++ +++++.+|.+++|+|+- |
T Consensus 322 ~~~~~~Yl~~~d~ti~gSR~g~~al~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~-g~~~~~~p~s~~V~f~~-p 399 (470)
T PLN02263 322 LSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLREA-GISAMLNELSSTVVFER-P 399 (470)
T ss_pred hccChHhhCCCCCCcCCCCCcHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEeCCCceEEEEec-C
Confidence 444443 357899999986 58999999999999999999999999999999999997 88889999999999972 1
Q ss_pred cccccccccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 196 RFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 196 ~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
. +.+..+|| .....+ ..+|+| ++||.+++.+++|+++|++.....
T Consensus 400 ----------------~--------~~~~~~gW---~L~~~~--~~~Hiv-vmphv~~~~id~fi~DL~~~~~~~ 444 (470)
T PLN02263 400 ----------------K--------DEEFVRRW---QLACQG--NIAHVV-VMPSVTIEKLDYFLKELVEKRSTW 444 (470)
T ss_pred ----------------c--------hHHhhcce---EEccCC--CcEEEE-EcCCCCHHHHHHHHHHHHHHHhhh
Confidence 0 11235788 444444 359995 558888999999999999887644
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-32 Score=294.52 Aligned_cols=228 Identities=43% Similarity=0.643 Sum_probs=199.3
Q ss_pred cccccCCCCChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHH
Q psy13453 525 FNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVS 604 (764)
Q Consensus 525 ~~~~~~~~~~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~A 604 (764)
||+++.+++++++++++++...+|++...|..+|..+++|+++++|+++++|++.. ...++||+|||+||+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~y~~~~~~~~le~~~~~~~~~~~g~~~~-------~~~~~~t~ggt~a~~~a 73 (345)
T cd06450 1 FLAGFVTTMDPPALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSE-------DADGVFTSGGSESNLLA 73 (345)
T ss_pred CcccccCCCcHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHhCCCCC-------CCCEEEeCChhHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999721 24799999999999999
Q ss_pred HHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCC
Q psy13453 605 ILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLI 684 (764)
Q Consensus 605 l~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~ 684 (764)
+.+++.+..++.+..+. ...++.+|++++.+|+++.+++..+|.+++.||+++++.+|+++|+++|.++.++|..
T Consensus 74 l~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~ 148 (345)
T cd06450 74 LLAARDRARKRLKAGGG-----RGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLN 148 (345)
T ss_pred HHHHHHHhhhhhhcccc-----cccCCeEEEEcCcchhHHHHHHHHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCC
Confidence 99998865443221100 0112458999999999999999999999999999988999999999999988888888
Q ss_pred ceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 685 PCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 685 p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
+.+|+++.++|.+|.++|+++|+++|++||+|+|+|+||+++.+..+.++....+++.+|++++++|||+++|++||+++
T Consensus 149 ~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~~~ 228 (345)
T cd06450 149 PIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVL 228 (345)
T ss_pred cEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchHHHH
Confidence 89999999999999999999999999999999999999999887666555545566788999999999999999999864
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-32 Score=310.34 Aligned_cols=250 Identities=20% Similarity=0.228 Sum_probs=200.3
Q ss_pred ccccccccCCcceeeeeHHHHHhhcCCCCCCeEEecCCC-CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCc
Q psy13453 7 IPKLAYPSETLSLLIYESFKATHSLSGTPDQVRLSGLPD-SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSL 85 (764)
Q Consensus 7 ~~~~~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpvd~-~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi 85 (764)
.| -+++|++ .|||+.|||++|||+. +.||+++ +++||+++|+++|++++..| ++|||||||++|+||||
T Consensus 157 ~P-~ii~s~~---aH~s~~Kaa~~lG~~~---~~v~~~~~~~~id~~~l~~~i~~~t~~g---~vV~~aGtT~~G~iDdi 226 (460)
T COG0076 157 KP-NIVCSET---AHFSFEKAARYLGLGL---RRVPTVPTDYRIDVDALEEAIDENTIGG---VVVGTAGTTDTGSIDDI 226 (460)
T ss_pred CC-eEEecCc---chhHHHHHHHHhCCCc---eeEEeccCccccCHHHHHHHHHhhccCc---eEEEEecCCCCCccCCH
Confidence 45 4788999 8999999999999999 6666665 89999999999999999877 56899999999999999
Q ss_pred hhhhc-----CCCceecccc---------------------------cccc------ceeeeecCCCcccccccc--cc-
Q psy13453 86 NAPVS-----NGPLKVGGVL---------------------------RRVY------SSCLVPRGQKSLRTTVLF--HF- 124 (764)
Q Consensus 86 ~~ia~-----~~wlHVDa~l---------------------------~~~y------~s~ll~rd~~~l~~~~s~--~~- 124 (764)
++|++ ++|+||||+. +|+| ||++++||++.+.....+ .+
T Consensus 227 ~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~e~l~~~~~~~~~yl 306 (460)
T COG0076 227 EELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILIFADYYL 306 (460)
T ss_pred HHHHHHHHHcCCcEEEEccccceeecccCccchhhcCCCCceEEEECcccccCCCCCceEEEEECHHHhhhhhhcccccC
Confidence 99997 9999999952 3443 579999999665554332 22
Q ss_pred ---ccCCcccCCCC-cccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeecccccc
Q psy13453 125 ---LFQHWQIPLGR-RFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDK 200 (764)
Q Consensus 125 ---d~~d~tle~SR-r~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~ 200 (764)
+..++|+.+|| +++++++|++|+++|++||++++++++++|++|+++|++.+.|+++++|.+++||||+.|.. +
T Consensus 307 ~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~l~~V~fr~~~~~-~- 384 (460)
T COG0076 307 PGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNEPELPIVAFRLKDDE-D- 384 (460)
T ss_pred CCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCCccceEEEEcCCcc-c-
Confidence 34678999999 44999999999999999999999999999999999999999999999999999999994321 1
Q ss_pred ccccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHc
Q psy13453 201 LDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLR 272 (764)
Q Consensus 201 ~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~ 272 (764)
. .....+..+++|-.+......+|..++..+.+.++..+++.+.++.++.++ +.+...+.+.+.++.+
T Consensus 385 ~---~~~~~~~~~~~gw~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 452 (460)
T COG0076 385 T---LADLSERLDRRGWQVPAQLLPKGLAIVFGTHVTGRQGLKFIVANLLITDRE-ESLLALIEEPGREIED 452 (460)
T ss_pred c---hhchHHHHHhcCceeecccCCccceeeeeeEEeeeeeehhhcchhhhhhhh-HHHHHHhhhhhhhhhc
Confidence 0 000011223344556666666677777888888889999999999998888 7777777766655543
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-31 Score=298.66 Aligned_cols=235 Identities=14% Similarity=0.146 Sum_probs=196.6
Q ss_pred cccccCCcceeeeeHHHHHhhcCCCCCCeEEecCCCC-CcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccCchh
Q psy13453 10 LAYPSETLSLLIYESFKATHSLSGTPDQVRLSGLPDS-EWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQSLNA 87 (764)
Q Consensus 10 ~~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpvd~~-~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDpi~~ 87 (764)
-+|+|++ .||||.|+++++|+.. +.||+|++ ++||+++|+++|+++ |++ ++|+|||++|++|||++
T Consensus 140 ~ii~s~~---~H~sv~ka~~~lg~~v---~~i~~d~~~~~vd~~~L~~~i~~~------t~lV~~t~g~t~tG~idpi~~ 207 (431)
T TIGR01788 140 NLVMGSN---VQVCWEKFARYFDVEL---REVPMDPGRYVIDPEQVVEAVDEN------TIGVVCILGTTYTGEYEDVKA 207 (431)
T ss_pred EEEEcCc---chHHHHHHHHHcCcee---EEEecCCCceeeCHHHHHHHHhhC------CeEEEEEeCCCCCcccCCHHH
Confidence 3899999 8999999999999865 99999975 699999999999875 445 79999999999999999
Q ss_pred hhc-----------CCCceecccc--------------------------------cccc-ceeeeecCCCccccccccc
Q psy13453 88 PVS-----------NGPLKVGGVL--------------------------------RRVY-SSCLVPRGQKSLRTTVLFH 123 (764)
Q Consensus 88 ia~-----------~~wlHVDa~l--------------------------------~~~y-~s~ll~rd~~~l~~~~s~~ 123 (764)
|++ ++|+||||+. +.++ ++.+++|+++.+...++.+
T Consensus 208 I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P~g~G~l~~r~~~~l~~~~~~~ 287 (431)
T TIGR01788 208 LNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFRLPRVKSINVSGHKYGLVYPGVGWVIWRDEEALPEELIFH 287 (431)
T ss_pred HHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcCCCCceEEEECchhccCCCCCcEEEEEeChHHcchhheec
Confidence 885 4899999931 1233 3678888876555544444
Q ss_pred cc-----cCCcccCCCCcc-cHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCC-CCceeEEEEeecc
Q psy13453 124 FL-----FQHWQIPLGRRF-RALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCP-PSMGLVCFRLKVR 196 (764)
Q Consensus 124 ~d-----~~d~tle~SRr~-~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~-P~l~iV~Fry~P~ 196 (764)
.+ ..++++++||++ +++++|+.|+.+|.+||++++++++++|++|+++|++.|+|+++.+ |.+++||||+.+.
T Consensus 288 ~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~~iV~Fr~~~~ 367 (431)
T TIGR01788 288 VNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIPLVAFKLKDD 367 (431)
T ss_pred ccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCceEEEEEeCCC
Confidence 32 345799999976 8899999999999999999999999999999999999999999998 8999999999753
Q ss_pred ccccccccccCccCCccHHHHHHHHHHHhcCcEE---EEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 197 FWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIY---IVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 197 ~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~---vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
+ +.+.-+.++.++|.++||++ .+.+.+++..++|+|+ +|+++++++++|+++|+++.+.+
T Consensus 368 ~-------------~~~~~~~~l~~~L~~~G~~~~~~~~p~~~~~~~~lR~~~-~~~~~~~~~~~~~~~~~~~~~~~ 430 (431)
T TIGR01788 368 A-------------DPGYTLYDLSHRLRERGWIVPAYTLPKNAEDIVVMRIVV-REGFSRDLAELLIEDIEAALAYL 430 (431)
T ss_pred C-------------CCCcCHHHHHHHHHHCCCcccCCCCCCccCCeEEEEEEe-cCCCCHHHHHHHHHHHHHHHHhh
Confidence 2 11112678999999999975 4555589999999975 88889999999999999988764
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-30 Score=281.58 Aligned_cols=214 Identities=16% Similarity=0.145 Sum_probs=172.7
Q ss_pred cccccCCcceeeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccCchhh
Q psy13453 10 LAYPSETLSLLIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQSLNAP 88 (764)
Q Consensus 10 ~~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDpi~~i 88 (764)
.+|.|++ .|||+.|||++||++. +.||+|++|+||+++|+++|++++ + .|++ |+|+|||++|+||||++|
T Consensus 113 ~vi~s~~---~H~Sv~kaa~~lg~~~---~~V~~d~~g~id~~~L~~~i~~~~--~-~~~lvv~tagtt~tG~idpi~eI 183 (374)
T PLN03032 113 ILYASRE---SHYSVFKAARMYRMEA---VKVPTLPSGEIDYDDLERALAKNR--D-KPAILNVNIGTTVKGAVDDLDRI 183 (374)
T ss_pred EEEeCCC---ceeHHHHHHHHcCCCC---eEeeeCCCCcCcHHHHHHHHHHcC--C-CCEEEEEEecCcCCccCCCHHHH
Confidence 3899999 8999999999999986 999999999999999999998753 2 4666 799999999999999998
Q ss_pred hc-----C-----CCceecccc-------------------------------cccc-ceeeeecCCCccccccccccc-
Q psy13453 89 VS-----N-----GPLKVGGVL-------------------------------RRVY-SSCLVPRGQKSLRTTVLFHFL- 125 (764)
Q Consensus 89 a~-----~-----~wlHVDa~l-------------------------------~~~y-~s~ll~rd~~~l~~~~s~~~d- 125 (764)
++ + +|+||||+. ..++ |+++++|++. + .++..+.+
T Consensus 184 ~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~~~vDSis~s~HK~~g~P~g~G~ll~r~~~-~-~~~~~~~~Y 261 (374)
T PLN03032 184 LRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPMPCGVALTRKKH-V-KALSQNVEY 261 (374)
T ss_pred HHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCCCcCCcEEEECcccccCCCcCeEEEEEEchh-h-HhhccCCcc
Confidence 86 3 599999942 1133 3678888643 2 22333333
Q ss_pred --cCCcccCCCC-cccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeecccccccc
Q psy13453 126 --FQHWQIPLGR-RFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLD 202 (764)
Q Consensus 126 --~~d~tle~SR-r~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~ 202 (764)
..++|++||| +++++++|++|+++|++||++++++++++|++|++.|++. +++++.+|.+++|+|+-.
T Consensus 262 l~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~-~~~~~~~p~~~~V~f~~~-------- 332 (374)
T PLN03032 262 LNSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEA-GLTCRLNELSSTVVFERP-------- 332 (374)
T ss_pred cCCCCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCcEEECCCceEEEEcCC--------
Confidence 4589999999 5789999999999999999999999999999999999985 999999999999999632
Q ss_pred ccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 203 NLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 203 ~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
.+ +. ..+|| .....++ .+|+|+ +||++++.+++|+++|++.
T Consensus 333 ---------~~-------~~-~~~~w---~l~~~~~--~~hi~v-m~~~~~~~id~fi~dl~~~ 373 (374)
T PLN03032 333 ---------MD-------EA-FIKKW---QLACEGD--IAHVVV-MPNVTVEKLDEFVEELVEV 373 (374)
T ss_pred ---------Cc-------Hh-Hhhee---eecccCC--EEEEEE-CCCCCHHHHHHHHHHHhcc
Confidence 10 11 22577 3434443 899964 5888899999999999763
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-27 Score=265.90 Aligned_cols=219 Identities=16% Similarity=0.146 Sum_probs=176.2
Q ss_pred ccccc-ccccCCcceeeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCccccccc
Q psy13453 6 LIPKL-AYPSETLSLLIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQ 83 (764)
Q Consensus 6 ~~~~~-~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iD 83 (764)
+.|.. +|.|++ .|||+.||+++||++. +.||++++|+||+++|+++|+++ |+.|++ |+|+|||++|++|
T Consensus 107 ~~~~~~ii~s~~---~H~Sv~ka~~~lg~~~---~~V~~~~~g~id~~~L~~~i~~~---~~~t~lvv~t~gtt~tG~id 177 (380)
T PRK02769 107 LFPDGTLYYSKD---THYSVSKIARLLRIKS---RVITSLPNGEIDYDDLISKIKEN---KNQPPIIFANIGTTMTGAID 177 (380)
T ss_pred hCCCcEEEeCCC---ceehHHHHHHHcCCCC---ceeccCCCCcCcHHHHHHHHHhC---CCCcEEEEEEeCCCCCcccC
Confidence 34554 899999 8999999999999987 89999999999999999999986 556777 7999999999999
Q ss_pred Cchhhhc-----C---CCceecccc-------------------------------cccc-ceeeeecCCCccccccccc
Q psy13453 84 SLNAPVS-----N---GPLKVGGVL-------------------------------RRVY-SSCLVPRGQKSLRTTVLFH 123 (764)
Q Consensus 84 pi~~ia~-----~---~wlHVDa~l-------------------------------~~~y-~s~ll~rd~~~l~~~~s~~ 123 (764)
||++|++ + +|+||||+. ..++ ++++++|++. +. .+...
T Consensus 178 pi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~~vDsis~s~HK~~~~P~g~G~l~~r~~~-~~-~~~~~ 255 (380)
T PRK02769 178 NIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFADGIDSIAISGHKFIGSPMPCGIVLAKKKY-VE-RISVD 255 (380)
T ss_pred CHHHHHHHHHHhCCCceEEEEEecccceeecccCccccCCccCCCCEEEECCcccCCCCCCcEEEEEehhh-hh-hcccC
Confidence 9999986 4 699999952 1123 3567777643 22 12222
Q ss_pred cc---cCCcccCCCC-cccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccc
Q psy13453 124 FL---FQHWQIPLGR-RFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWD 199 (764)
Q Consensus 124 ~d---~~d~tle~SR-r~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~ 199 (764)
.+ ..++|++||| +++++++|++|+++|++||++++++++++|+++.++|++ .+++++.+|.+++|||+..
T Consensus 256 ~~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~-~g~~~~~~p~~~~v~f~~~----- 329 (380)
T PRK02769 256 VDYIGSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQA-NGIPAWRNPNSITVVFPCP----- 329 (380)
T ss_pred ccccCCCCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHh-CCCEEEcCCCceEEEEcCC-----
Confidence 22 3678999999 678999999999999999999999999999999999988 5999999999999999632
Q ss_pred cccccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13453 200 KLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATE 268 (764)
Q Consensus 200 ~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~ 268 (764)
. .++ . +|| .....++ .+|+| ++||++++++++|++++.+.-.
T Consensus 330 ------------~----~~~----~-~~w---~l~~~~~--~~hi~-~~~~~~~~~~~~f~~dl~~~~~ 371 (380)
T PRK02769 330 ------------S----ERI----W-KKW---HLATSGN--QAHII-TMPHHNKQQIDSLIDELIFDLK 371 (380)
T ss_pred ------------C----HHH----H-hCe---eEcccCC--EEEEE-ECCCCCHHHHHHHHHHHHHHHh
Confidence 1 112 1 577 4444443 89995 6788889999999999987653
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-25 Score=240.07 Aligned_cols=207 Identities=22% Similarity=0.197 Sum_probs=173.3
Q ss_pred CccccccCCCCChHHHHHHHH---HHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHH
Q psy13453 523 PQFNAYFPTGSSYPSIVGDML---SGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASE 599 (764)
Q Consensus 523 P~~~~~~~~~~~~~~~lad~l---~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTe 599 (764)
+-|++|-.+.+..+.++..++ ...+.++...+..+..+..+-+++.+++++++|.++ ...+|||||||
T Consensus 2 miYlD~~ATTp~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~---------~eIiFTSG~TE 72 (386)
T COG1104 2 MIYLDNAATTPVDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGADP---------EEIIFTSGATE 72 (386)
T ss_pred cccccccccCCCCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhCCCC---------CeEEEecCCcH
Confidence 568999888888777655444 334444445788888999999999999999999987 37899999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhC---CCceEEEecCCCCcccHHHHHHHHH
Q psy13453 600 ATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIG---DVPVRQLRSDDNGVLRGDALLTAVK 676 (764)
Q Consensus 600 ANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~l---Gl~v~~Vp~d~~g~md~~~Le~~I~ 676 (764)
||.+|++.+......+. .+-.|++|..+|.|+...++++ |+.|.++|+|++|++|+++|+++|+
T Consensus 73 snNlaI~g~~~a~~~~~-------------~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~ 139 (386)
T COG1104 73 SNNLAIKGAALAYRNAQ-------------KGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALR 139 (386)
T ss_pred HHHHHHHhhHHhhhccc-------------CCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcC
Confidence 99999997544332211 1225999999999999999998 9999999999999999999999998
Q ss_pred HhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCC
Q psy13453 677 EDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLV 756 (764)
Q Consensus 677 ~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~ 756 (764)
++ +++|.+.+.++++|+++||+||+++|++++++|||||+++.+-+..+-.. + .+|.++++.||+. .
T Consensus 140 ~~------T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQa~Gkipi~~~~-----~-~vD~ls~SaHK~~-G 206 (386)
T COG1104 140 PD------TILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQAVGKIPIDLEE-----L-GVDLLSFSAHKFG-G 206 (386)
T ss_pred CC------ceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehhhhcCceeccccc-----c-CcceEEeehhhcc-C
Confidence 77 56999999999999999999999999999999999999999877765322 1 2699999999955 5
Q ss_pred CcCceeeC
Q psy13453 757 NFDCSAMW 764 (764)
Q Consensus 757 P~~~g~l~ 764 (764)
|.|+|+||
T Consensus 207 pkGiGaLy 214 (386)
T COG1104 207 PKGIGALY 214 (386)
T ss_pred CCceEEEE
Confidence 99999987
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.2e-22 Score=239.67 Aligned_cols=175 Identities=17% Similarity=0.178 Sum_probs=141.6
Q ss_pred chHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEec
Q psy13453 558 PACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTS 637 (764)
Q Consensus 558 p~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S 637 (764)
....+++.+..+|+++++|++. ......||+++|+.+++++|.....+ +..++.+|++|
T Consensus 538 qG~l~~i~e~q~~l~eltG~d~----------~sl~~~~ga~ge~agL~a~r~~~~~~-----------G~~~r~~vlis 596 (954)
T PRK05367 538 AGYRELIDQLEAWLAEITGYDA----------VSLQPNAGAQGEYAGLLAIRAYHESR-----------GEGHRDVCLIP 596 (954)
T ss_pred HHHHHHHHHHHHHHHHHHCCCC----------EEECccHHHHHHHHHHHHHHHHhhcc-----------CCCCCCEEEEE
Confidence 3488999999999999999974 23334578899999998887643221 11124579999
Q ss_pred CCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEE
Q psy13453 638 DQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWL 717 (764)
Q Consensus 638 ~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwL 717 (764)
+.+|.|+.+++..+|++++.||+|++|++|+++|+++|++. +..+++|++|.+||..+..|||++|+++|+++|+|+
T Consensus 597 ~~aH~snp~sa~~~G~~vv~v~~d~~G~iD~~~L~~~i~~~---~~~la~V~it~pst~G~~e~~I~eI~~i~h~~G~~v 673 (954)
T PRK05367 597 SSAHGTNPASAVMAGMKVVVVACDENGNIDLDDLRAKAEEH---ADNLAAIMITYPSTHGVFEETIREICEIVHEHGGQV 673 (954)
T ss_pred chhhhhhHHHHHHCCCEEEEECCCCCCCcCHHHHHHHHhcc---CCCeEEEEEEcCCCCeeecCCHHHHHHHHHHcCCEE
Confidence 99999999999999999999999999999999999999753 235889999999998444599999999999999999
Q ss_pred EEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCce
Q psy13453 718 HVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCS 761 (764)
Q Consensus 718 HVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g 761 (764)
|||||++++.+.... .|--.||++++|+|||+++|+|+|
T Consensus 674 ~VDgA~~~al~~l~~-----pg~~GADi~~~s~HK~f~~P~G~G 712 (954)
T PRK05367 674 YLDGANMNAQVGLAR-----PGDIGADVSHLNLHKTFCIPHGGG 712 (954)
T ss_pred EEECcChhhccCCCC-----hhhcCCCEEEecCcccCCCCcCCC
Confidence 999999765443321 122357999999999999999977
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-23 Score=228.76 Aligned_cols=229 Identities=21% Similarity=0.224 Sum_probs=176.8
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCccccccCCCCChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCc
Q psy13453 500 EDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPE 579 (764)
Q Consensus 500 ~~~~~il~~l~~~i~~~~~~~~~P~~~~~~~~~~~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~ 579 (764)
.+.+++|+.+++.-.++.. .. |||+...+.+. +.++ +.+...+..+.......+....++.++.+++++++|.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~-~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~ 76 (371)
T PRK13520 2 LSEEEILEELEEYRSEDLK-YE--RILSSMCTEPH-PIAR-KAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLPD 76 (371)
T ss_pred CCHHHHHHHHHHHHhcCCC-HH--HeeeeeecCch-HHHH-HHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCC
Confidence 4568999999998777654 33 58888765544 3333 444444444333333336678889999999999999876
Q ss_pred cccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEe
Q psy13453 580 EFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLR 659 (764)
Q Consensus 580 ~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp 659 (764)
..++||+|||++|+.++.+++..... ++..|++++.+|+++.++++..|++++.||
T Consensus 77 ---------~~~~~~~ggt~a~~~a~~~~~~~~~~---------------~~~~vl~~~~~h~s~~~~~~~~g~~~~~v~ 132 (371)
T PRK13520 77 ---------AYGYITSGGTEANIQAVRAARNLAKA---------------EKPNIVVPESAHFSFDKAADMLGVELRRAP 132 (371)
T ss_pred ---------CCeEEecCcHHHHHHHHHHHHhhccC---------------CCceEEecCcchHHHHHHHHHcCceEEEec
Confidence 35799999999999999888754210 123688999999999999999999999999
Q ss_pred cCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhh--hhh
Q psy13453 660 SDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYA--HLK 737 (764)
Q Consensus 660 ~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r--~~l 737 (764)
+++++.+|+++|+++|.++ +.+|+++.++|.+|.++|+++|+++|++||+|+|||+||+++.+...+.. ..+
T Consensus 133 ~~~~~~~d~~~l~~~i~~~------~~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~ 206 (371)
T PRK13520 133 LDDDYRVDVKAVEDLIDDN------TIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDF 206 (371)
T ss_pred CCCCCcCCHHHHHHHHhhC------CEEEEEEcCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccc
Confidence 9988999999999999754 45777888999999999999999999999999999999998754321110 111
Q ss_pred cCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 738 RGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 738 ~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
....+|++++++|||+++|.++|.++
T Consensus 207 -~~~~vd~~~~s~~K~~~a~~~~G~~~ 232 (371)
T PRK13520 207 -SLPGVDSITIDPHKMGLAPIPAGGIL 232 (371)
T ss_pred -cCCCCceEEECCccccCccCCceEEE
Confidence 12356999999999999999998764
|
|
| >KOG1383|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-23 Score=226.53 Aligned_cols=239 Identities=18% Similarity=0.186 Sum_probs=195.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCccccccCCCCChHHHHHHHHHHhhcc-cCccccCCchHHHHHHHHHHHH
Q psy13453 493 GEMPEEGEDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGL-IGFSWLSSPACTELEVLVMNWL 571 (764)
Q Consensus 493 ~~lP~~g~~~~~il~~l~~~i~~~~~~~~~P~~~~~~~~~~~~~~~lad~l~~~lN~-n~~~~~~sp~~t~lE~~v~~~l 571 (764)
..+|++|.+-+++++.+.+..+.+...+..+.-+.-....+....+ ++..+|- |...-+..|..+.+|.++++++
T Consensus 54 ~~lP~~gl~~d~v~~~i~~~~~ld~~~~~~~vS~~v~~~~~~~~~l----~~~~~~k~N~l~~d~fp~~~~~e~~~Vnm~ 129 (491)
T KOG1383|consen 54 FTLPSKGLPKDAVLELINDELMLDGNPRLGLASGVVYWGEPELDKL----IMEAYNKFNPLHPDEFPVVRKLEAECVNMI 129 (491)
T ss_pred ecCCCCCCCHHHHHHHHHHHhccCCCcccCeeeEEEecCCcchhhH----HHHHHhhcCccCccccchhHHHHHHHHHHH
Confidence 5789999999999999999887766533333222222223333334 4444444 6777889999999999999999
Q ss_pred HHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhC
Q psy13453 572 GKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIG 651 (764)
Q Consensus 572 a~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~l 651 (764)
+.||+.+++ ..|..|+|||||.+.+.+..|++.....+ ..++.|+++...|.+++|+++++
T Consensus 130 ~~L~~~~~~--------~~g~~t~G~Ses~l~~~k~~~~~r~~~k~-----------I~~p~iv~~~~v~~a~eK~a~yf 190 (491)
T KOG1383|consen 130 ANLFNAPSD--------SCGCGTVGGSESGLAAKKSYRNRRKAQKG-----------IDKPNIVTPQNVHAAFEKAARYF 190 (491)
T ss_pred HHHhcCCcc--------ccCccccccchHHHHHHHHHHHHHHhccC-----------CCCccccchHHHHHHHHHHHhhE
Confidence 999999864 67899999999988888888877654311 22456889999999999999999
Q ss_pred CCceEEEecC-CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHh-cCCEEEEeccccccccc
Q psy13453 652 DVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQE-YNIWLHVDAAYAGSALL 729 (764)
Q Consensus 652 Gl~v~~Vp~d-~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~-~glwLHVDaA~Gg~~l~ 729 (764)
++.++.||++ .+++||+..+.+.|.++ +++|++++|++.+|.+||+++|+++.-+ |++.+|||+|-||+..+
T Consensus 191 ~v~l~~V~~~~~~~~~D~~k~~~~i~eN------ti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p 264 (491)
T KOG1383|consen 191 EVELREVPLDEGDYRVDPGKVVRMIDEN------TIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINP 264 (491)
T ss_pred EEEEEeeeccccceEecHHHHHHHhccc------eEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCcccccc
Confidence 9999999999 78999999999999887 5699999999999999999999999988 99999999999998874
Q ss_pred c-----chhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 730 L-----PEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 730 ~-----~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
. .++.++..|+ -||+.|.||++++|.|.|++
T Consensus 265 ~~~~~~~~fdFr~p~V---~Sisa~~HKYGl~~~G~~~v 300 (491)
T KOG1383|consen 265 AGYLNEEEFDFRVPGV---TSISADGHKYGLAPAGSSWV 300 (491)
T ss_pred ccccCccccccCCCCc---eeEeeccceeeeeecCcEEE
Confidence 1 2445555555 99999999999999999975
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.6e-22 Score=220.58 Aligned_cols=230 Identities=20% Similarity=0.204 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCccccccCCCCChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccc
Q psy13453 502 WRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEF 581 (764)
Q Consensus 502 ~~~il~~l~~~i~~~~~~~~~P~~~~~~~~~~~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~ 581 (764)
-+++++++.+ ++.+....+++|++.++.+.+..... +.+..++..+.......|....++.++.+++++++|.++
T Consensus 2 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~-- 76 (373)
T TIGR03812 2 EEEVLEELKE-YRSEDLKYSDGRILGSMCTNPHPIAV--KAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLPD-- 76 (373)
T ss_pred HHHHHHHHHH-HHhcCCCCCCCcEEEEEeCCchHHHH--HHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhCCCC--
Confidence 4789999999 45666668899998888776554422 222333332222222345678899999999999999976
Q ss_pred cCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecC
Q psy13453 582 LNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSD 661 (764)
Q Consensus 582 ~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d 661 (764)
..+++++|||++|+.++.+++...... .+...|++++.+|+++.++++..|++++.+|++
T Consensus 77 -------~~~~~~~g~~~~~~~~~~~~~~~~~~~-------------~~g~~vl~~~~~h~~~~~~~~~~G~~~~~v~~~ 136 (373)
T TIGR03812 77 -------AYGYIVSGGTEANIQAVRAAKNLAREE-------------KRTPNIIVPESAHFSFEKAAEMLGLELRYAPLD 136 (373)
T ss_pred -------CCeEEeccHHHHHHHHHHHHHHHHhcc-------------CCCcEEEECCcchHHHHHHHHHcCCeEEEEeeC
Confidence 357899999999999887766432111 012358889999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchh-----hhh
Q psy13453 662 DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEY-----AHL 736 (764)
Q Consensus 662 ~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~-----r~~ 736 (764)
.++.+|+++|++++++. +..|+.+.++|.+|.++|+++|+++|+++|+|+|||+||+++.+..... ...
T Consensus 137 ~~~~~d~~~l~~~l~~~------~~~vv~~~~~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d 210 (373)
T TIGR03812 137 EDYTVDVKDVEDLIDDN------TIGIVGIAGTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFD 210 (373)
T ss_pred CCCCcCHHHHHHHHhhC------cEEEEEECCCCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCcc
Confidence 89999999999999764 2355656689999999999999999999999999999999865432110 111
Q ss_pred hcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 737 KRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 737 l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
+. ...+|++++|+|||+..|.++|.+
T Consensus 211 ~~-~~~~d~~~~s~~K~~~~~~~~G~~ 236 (373)
T TIGR03812 211 FS-LPGVQSITIDPHKMGLSPIPAGGI 236 (373)
T ss_pred cc-CCCCCEEEECccccCCCcCCceEE
Confidence 11 124599999999999999999865
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-21 Score=216.56 Aligned_cols=230 Identities=18% Similarity=0.173 Sum_probs=170.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHcCCCCCCCC-----------------CccccccCC---CCChHHHHHHHHHHhhcccCc
Q psy13453 493 GEMPEEGEDWRHIMRDMNTVIMPGITHWQS-----------------PQFNAYFPT---GSSYPSIVGDMLSGAFGLIGF 552 (764)
Q Consensus 493 ~~lP~~g~~~~~il~~l~~~i~~~~~~~~~-----------------P~~~~~~~~---~~~~~~~lad~l~~~lN~n~~ 552 (764)
..+|++|.+.+.|...+.+.-..+.++|.+ -|+|++..+ +.+..+ ..-
T Consensus 28 ~~~p~~g~~~~~i~~~l~~l~~~~~~~~~~~~~~gere~rv~~~~~~~~~~~~~hgigr~~~l~~------------~q~ 95 (444)
T TIGR03531 28 RKIPEEGWDDETIELFLHELSVMDTNNFPNNVGVGEREGRVFSKLVARRHYRFCHGIGRSGDLVA------------PQP 95 (444)
T ss_pred CcCCccCCCHHHHHHHHHHHhcCCcCCCccccCcCcccceeechhhhhcccceecCCCCcccccc------------cCc
Confidence 468999999999988888875556666651 133333333 211110 011
Q ss_pred cccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChH-HHHHHHHHHHHHHHhhhhccCCCCCccccccCc
Q psy13453 553 SWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTAS-EATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631 (764)
Q Consensus 553 ~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgT-eANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~ 631 (764)
....|+....++++...|+++++|.++. ..+++++||| +++++++.++|.+.. ..+
T Consensus 96 ka~gss~~~~l~~~~e~~~~~~~G~~~~--------~~a~~v~~~Tg~al~laL~alr~~~~---------------~gd 152 (444)
T TIGR03531 96 KAAGSSLLYKLTNKLVKDFLKLLGLRSI--------KSAFVVPLATGMSLSLCLSALRHKRP---------------KAK 152 (444)
T ss_pred cccCccHHHHHHHHHHHHHHHHcCCCCC--------CEEEEECCHHHHHHHHHHHHcCCcCC---------------CCC
Confidence 1224566788999999999999999742 2478999999 789888887664210 013
Q ss_pred eEEEecCCcchhHHHHHHhCCCceEEEec---CCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHH
Q psy13453 632 LVAYTSDQSNSSVEKSAIIGDVPVRQLRS---DDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGP 708 (764)
Q Consensus 632 ~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~---d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~ 708 (764)
.+| ++..+|+|+.||+.++|++++.|++ ++++.||+++|+++|++.. ...+++|+.|.+|+..|..|||++|++
T Consensus 153 ~VI-~p~~th~S~~kAi~~~G~~pv~Vd~~~d~~~~~iD~e~Le~aIt~~~--~kai~~Vv~Tp~t~~~g~~ddL~eIa~ 229 (444)
T TIGR03531 153 YVI-WPRIDQKSCIKAISTAGFEPRVIETVLDGDELTTDVEDIERAIEEIG--PDNILCVLSTTSCFAPRSPDDIEEIAK 229 (444)
T ss_pred EEE-EECcChHHHHHHHHHcCCeEEEeeeeecCcCCCcCHHHHHHHHHhcc--CCCEEEEEEcCCcCCCcchhCHHHHHH
Confidence 344 5556799999999999999999995 4678999999999998532 134667777777777889999999999
Q ss_pred HHHhcCCEEEEeccccccccccchhhhhh-cCCC--cccEEEEcCCccCCCCcCceee
Q psy13453 709 ICQEYNIWLHVDAAYAGSALLLPEYAHLK-RGLE--YVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 709 i~~~~glwLHVDaA~Gg~~l~~~~~r~~l-~gie--~aDSit~d~HK~l~~P~~~g~l 763 (764)
+|++||+|+|||+|||.. ++.+.+.+ +|++ ++|++++|+||++.+|.++|++
T Consensus 230 la~k~gI~lIvDaAyg~~---~~~~~~~~~~g~~~Grad~vv~s~hK~l~~pg~Gg~I 284 (444)
T TIGR03531 230 ICANYDIPHIVNNAYGLQ---SNKYMELINKAIKVGRVDAVVSSTDKNFMVPVGGAII 284 (444)
T ss_pred HHHHcCCEEEEECcCcCc---ChhhhhhhhccccccCCCeEEEeCccCCCCCCCEEEE
Confidence 999999999999999963 33334443 3443 6899999999999999998876
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.6e-20 Score=201.47 Aligned_cols=236 Identities=23% Similarity=0.253 Sum_probs=179.5
Q ss_pred cccccCCcceeeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccCchhh
Q psy13453 10 LAYPSETLSLLIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQSLNAP 88 (764)
Q Consensus 10 ~~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDpi~~i 88 (764)
.+++++. .|||+.|++.++|... +.||+++++++|+++|+++|++..++|..|.+ +.+.+++++|.+||++++
T Consensus 97 ~v~~~~~---~h~~~~~~~~~~g~~~---~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i 170 (345)
T cd06450 97 VIVCSDQ---AHVSVEKAAAYLDVKV---RLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEI 170 (345)
T ss_pred EEEEcCc---chhHHHHHHHHHhcCe---EEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHH
Confidence 4777887 8999999999999877 99999988999999999999987777777766 699999999999999998
Q ss_pred hc-----CCCceeccccccccceeeeecCC-CccccccccccccCCcccCCCCccc-----HHHHHHHHHHccHHHHHHH
Q psy13453 89 VS-----NGPLKVGGVLRRVYSSCLVPRGQ-KSLRTTVLFHFLFQHWQIPLGRRFR-----ALKLWMTLRSYGLKGLQAY 157 (764)
Q Consensus 89 a~-----~~wlHVDa~l~~~y~s~ll~rd~-~~l~~~~s~~~d~~d~tle~SRr~~-----ALklWatL~~lG~eGy~~~ 157 (764)
++ ++|+|+|++...........+.. ..+...-+...+.. ..+.+..+.. ++++|++++++|.+||.++
T Consensus 171 ~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~-K~l~~p~g~g~~~~~~~~~~~~l~~l~~~g~~~~ 249 (345)
T cd06450 171 ADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPH-KYGLVPLGCSAVLVRALKLWATLRRFGRDGYGEH 249 (345)
T ss_pred HHHHHHhCCeEEEechhhHHHhhChhhHHHhcCccccCEEEEchh-HhhCCCcchHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 86 89999999742211000000000 00000000011111 1121211111 7889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEeceeC
Q psy13453 158 LRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQ 237 (764)
Q Consensus 158 i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~ 237 (764)
+++..++++++.+.|++.++++++.+|+.++++|++.+.. +.+..+.++.++|.++|.+++....+.
T Consensus 250 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~iv~f~~~~~~-------------~~~~~~~~i~~~L~~~g~~~~~~~~~~ 316 (345)
T cd06450 250 IDRIVDLAKYLAELIRADPGFELLGEPNLSLVCFRLKPSV-------------KLDELNYDLSDRLNERGGWHVPATTLG 316 (345)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEECCcc-------------hhhHHHHHHHHHHHhcCCEEEEeeEEC
Confidence 9999999999999999999999999999999999975310 112345689999999987777766666
Q ss_pred CeeEEEEeccCCCCCHHHHHHHHHHHHH
Q psy13453 238 DRLFMRFAICSSQTEESDVQLGWNEIRT 265 (764)
Q Consensus 238 g~~~LRi~v~np~Tt~e~i~~~l~~l~~ 265 (764)
+..++|+++++++|++++++.+++.|++
T Consensus 317 ~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 317 GPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred CeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 7789999999999999999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5e-20 Score=206.18 Aligned_cols=203 Identities=19% Similarity=0.172 Sum_probs=161.7
Q ss_pred ccccccCCCCChHHHHHHHHHHh-----hcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChH
Q psy13453 524 QFNAYFPTGSSYPSIVGDMLSGA-----FGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTAS 598 (764)
Q Consensus 524 ~~~~~~~~~~~~~~~lad~l~~~-----lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgT 598 (764)
.||++..++. .+..+.+.+..+ -|.+...+..+..++..++++++.+++++|.++. ...+||+|.|
T Consensus 24 vylD~aa~~~-~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~--------~eIvft~~tT 94 (405)
T COG0520 24 VYLDNAATSQ-KPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSS--------DEIVFTRGTT 94 (405)
T ss_pred EEecCccccc-CCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCC--------CeEEEeCChh
Confidence 6888876666 344444445543 2444567778888999999999999999999752 4689999999
Q ss_pred HHHHHHHH-HHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHH----HHHHhCCCceEEEecCCCCcccHHHHHH
Q psy13453 599 EATLVSIL-VAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVE----KSAIIGDVPVRQLRSDDNGVLRGDALLT 673 (764)
Q Consensus 599 eANl~Al~-aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~----kAa~~lGl~v~~Vp~d~~g~md~~~Le~ 673 (764)
++..+... .++. . .++..|++|+.+|.|+. ..++..|+.++.||++++|.++.+++++
T Consensus 95 ~aln~va~~l~~~-~----------------~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~~~~~~~ 157 (405)
T COG0520 95 EALNLVARGLGRS-L----------------KPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEK 157 (405)
T ss_pred HHHHHHHHHhhhh-h----------------cCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCCCCCcCHHHHHH
Confidence 99544333 2222 1 11246899999998864 4455579999999999999999999999
Q ss_pred HHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCcc
Q psy13453 674 AVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKW 753 (764)
Q Consensus 674 ~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~ 753 (764)
.|.+.++ +|++|..++.+|.+.|+++|+++|+++|+|+.|||||+.+.+..+- +.+ .||.+.+++|||
T Consensus 158 ~i~~~Tk------lvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~idv-----~~l-~~Df~afsgHKw 225 (405)
T COG0520 158 LITPKTK------LVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDV-----QEL-GCDFLAFSGHKW 225 (405)
T ss_pred hcCCCce------EEEEECccccccccchHHHHHHHHHHcCCEEEEECccccCccCCCc-----hhc-CCCEEEEccccc
Confidence 8777544 9999999999999999999999999999999999999998766642 222 579999999999
Q ss_pred CCCCcCceeeC
Q psy13453 754 LLVNFDCSAMW 764 (764)
Q Consensus 754 l~~P~~~g~l~ 764 (764)
|+.|.|+|+||
T Consensus 226 l~gP~GiGvLy 236 (405)
T COG0520 226 LLGPTGIGVLY 236 (405)
T ss_pred ccCCCceEEEE
Confidence 99999999997
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-19 Score=216.29 Aligned_cols=229 Identities=12% Similarity=0.145 Sum_probs=176.9
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCccccccCCCCChHHHHHHHHHHhhcccCccccCCch-----HHHHHHHHHHHHHHH
Q psy13453 500 EDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPA-----CTELEVLVMNWLGKA 574 (764)
Q Consensus 500 ~~~~~il~~l~~~i~~~~~~~~~P~~~~~~~~~~~~~~~lad~l~~~lN~n~~~~~~sp~-----~t~lE~~v~~~la~l 574 (764)
.+--+++..+++.-..+.. ..| .|++-=.+ ......+.+++...++.....+...|. ..+++.+...||+++
T Consensus 466 ~sE~e~~r~~~~L~~kn~~-~~~-~fi~lGsc-tmk~na~v~~l~~s~~ef~t~hPyqPe~~sqG~lq~i~elq~~l~el 542 (939)
T TIGR00461 466 HSETEMLRYLHRLESKDLA-LNN-SMIPLGSC-TMKLNATAEMMPITWPEFSNIHPFQPSNQVEGYQELIAQLEKWLCSI 542 (939)
T ss_pred CCHHHHHHHHHHHHhcCCC-ccc-cCCCCccC-CCccCHHHHHHHhcchhhcCcCCCCchHHhHHHHHHHHHHHHHHHHH
Confidence 3557788887776444432 122 23332222 233455667776667666556666666 889999999999999
Q ss_pred cCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCc
Q psy13453 575 LGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVP 654 (764)
Q Consensus 575 lG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~ 654 (764)
+|++. .++..+||+++++++++++|.....+ . ..++.+|++|+.+|.++.+++...|++
T Consensus 543 tGmd~----------~Sl~p~aGA~gE~agL~aiR~y~~~r--g---------e~~R~~vlip~saHgtnPasa~~~G~~ 601 (939)
T TIGR00461 543 TGFDA----------ISLQPNSGAQGEYAGLRVIRSYHESR--G---------ENHRNICLIPVSAHGTNPASAAMAGMQ 601 (939)
T ss_pred HCCCC----------cccCCchHHHHHHHHHHHHHHHHHhc--C---------CCCCCEEEEEccccCcCHHHHHHCCCE
Confidence 99985 47888999999999999998754211 1 123568999999999999999999999
Q ss_pred eEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc-HHHHHHHHHhcCCEEEEeccccccccccchh
Q psy13453 655 VRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN-LEELGPICQEYNIWLHVDAAYAGSALLLPEY 733 (764)
Q Consensus 655 v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp-l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~ 733 (764)
++.||+|++|++|+++|+++|++ .|..+.+|++|.+|| +|.++| |++|+++|+++|.|+|||||+..+......
T Consensus 602 Vv~V~~d~~G~iDle~L~~~i~~---~~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~l~~- 676 (939)
T TIGR00461 602 VVPVNCDQDGNIDLVDLKNKAEQ---HGDELAAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVGLTS- 676 (939)
T ss_pred EEEeccCCCCCcCHHHHHHHHhh---cCCceEEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEEecChhhCCCCCC-
Confidence 99999999999999999999976 344588999999999 799977 999999999999999999999664333221
Q ss_pred hhhhcCCCcccEEEEcCCccCCCCcCce
Q psy13453 734 AHLKRGLEYVDSFDFNTHKWLLVNFDCS 761 (764)
Q Consensus 734 r~~l~gie~aDSit~d~HK~l~~P~~~g 761 (764)
.|--.||.+.+|.||+|+.|.++|
T Consensus 677 ----Pg~~GaDi~~~s~HKtf~~P~G~G 700 (939)
T TIGR00461 677 ----PGDLGADVCHLNLHKTFCIPHGGG 700 (939)
T ss_pred ----ccccCCCEEEecCCccCCCCCCCC
Confidence 133467999999999999999883
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=201.07 Aligned_cols=203 Identities=19% Similarity=0.175 Sum_probs=155.9
Q ss_pred cccccCCCCChHHHHHHHHHHhhc----ccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHH
Q psy13453 525 FNAYFPTGSSYPSIVGDMLSGAFG----LIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEA 600 (764)
Q Consensus 525 ~~~~~~~~~~~~~~lad~l~~~lN----~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeA 600 (764)
||++-.+++.+..++..+.....+ .....+..++.+..+.+++.+.+++++|.++ ...+||+|+|++
T Consensus 2 Yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~---------~~v~~t~~~t~a 72 (364)
T PLN02651 2 YLDMQATTPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADP---------KEIIFTSGATES 72 (364)
T ss_pred cccCcCCCCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCC---------CeEEEeCCHHHH
Confidence 677776666666554443332211 1111233456677888889999999999865 368999999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHH---hCCCceEEEecCCCCcccHHHHHHHHHH
Q psy13453 601 TLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAI---IGDVPVRQLRSDDNGVLRGDALLTAVKE 677 (764)
Q Consensus 601 Nl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~---~lGl~v~~Vp~d~~g~md~~~Le~~I~~ 677 (764)
+.+++..++....+ ++..|+++..+|.|+.+++. ..|+.++.||++++|.+|+++|+++|++
T Consensus 73 ~~~~l~~~~~~~~~---------------~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~ 137 (364)
T PLN02651 73 NNLAIKGVMHFYKD---------------KKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKSDGLVDLDELAAAIRP 137 (364)
T ss_pred HHHHHHHHHHhccC---------------CCCEEEEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCC
Confidence 99998876543221 12358889999999876654 3588999999998899999999999965
Q ss_pred hhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 678 DLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 678 ~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
+ +.+|+.+..++.+|.++|+++|+++|+++|+|+|||||++.+.+..+ ++.+ .+|++++++||| +.|
T Consensus 138 ~------t~lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~~~~~-----~~~~-~~D~~~~s~hK~-~gp 204 (364)
T PLN02651 138 D------TALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGKIPVD-----VDDL-GVDLMSISGHKI-YGP 204 (364)
T ss_pred C------cEEEEEECCCCCceecccHHHHHHHHHHcCCEEEEEcchhhCCcccC-----cccC-CCCEEEechhhh-CCC
Confidence 4 34888999999999999999999999999999999999998766553 2222 369999999998 679
Q ss_pred cCceeeC
Q psy13453 758 FDCSAMW 764 (764)
Q Consensus 758 ~~~g~l~ 764 (764)
.|+|++|
T Consensus 205 ~G~g~l~ 211 (364)
T PLN02651 205 KGVGALY 211 (364)
T ss_pred CceEEEE
Confidence 9999986
|
|
| >KOG1549|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.8e-20 Score=199.45 Aligned_cols=208 Identities=18% Similarity=0.154 Sum_probs=163.6
Q ss_pred CCCCCccccccCCCCChHHHHHHHHH---Hhh-cccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEe
Q psy13453 519 HWQSPQFNAYFPTGSSYPSIVGDMLS---GAF-GLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQ 594 (764)
Q Consensus 519 ~~~~P~~~~~~~~~~~~~~~lad~l~---~~l-N~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfT 594 (764)
+-..|-|+++-.+++..+.++..++. .++ |++.. ..+..+..--+.+++.+|+|+|.++. +.+||
T Consensus 40 ~~~~~vyld~~at~p~~~~Vldam~~~~~~~~~nPh~~--~y~w~~~~~~E~aR~~VAklInAd~~---------dIiFt 108 (428)
T KOG1549|consen 40 HGTRPVYLDNQATGPMDPRVLDAMLPYLLEYLGNPHSR--SYGWKAEDAVEAAREQVAKLINADPS---------DIVFT 108 (428)
T ss_pred CCCccEEEecCcCCCCCHHHHHHHHHHHHHhhcCCCcc--ccchhhhHHHHHHHHHHHHHhCCCCC---------cEEEe
Confidence 45678999999999988877654443 333 33322 22333343345689999999999874 59999
Q ss_pred CChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhC---CCceEEEecCCCCcccHHHH
Q psy13453 595 STASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIG---DVPVRQLRSDDNGVLRGDAL 671 (764)
Q Consensus 595 sGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~l---Gl~v~~Vp~d~~g~md~~~L 671 (764)
+|+||||.+++..--... .. + . +-.|++...+|.|+.++++.+ |+.++.||++.+|-.|++.|
T Consensus 109 s~ATEs~Nlvl~~v~~~~-~~-~-----------~-~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~ 174 (428)
T KOG1549|consen 109 SGATESNNLVLKGVARFF-GD-K-----------T-KKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVEDSGLVDISKL 174 (428)
T ss_pred CCchHHHHHHHHHhhccc-cc-c-----------c-cceEEEecccCcchhHHHHHHHhcCeEEEEeccCccccccHHHH
Confidence 999999988776321111 11 0 0 116899999999999998874 88999999999999999999
Q ss_pred HHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCC
Q psy13453 672 LTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTH 751 (764)
Q Consensus 672 e~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~H 751 (764)
++.|+.++ -+|.+.+-++..|...|++||..+|+++|+.+|+||||+.+....+ ++.+ .+|.++++.|
T Consensus 175 ~~~i~~~T------~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~i~vD-----V~el-n~D~~s~s~H 242 (428)
T KOG1549|consen 175 REAIRSKT------RLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAVGKIPVD-----VQEL-NADFLSISAH 242 (428)
T ss_pred HHhcCCCc------eEEEEEecccCccccccHHHHHHHhCcCCcEEEeehhhhcCCcccc-----HHHc-Cchheeeecc
Confidence 99999864 4999999999999999999999999999999999999999866554 3334 5799999999
Q ss_pred ccCCCCcCceeeC
Q psy13453 752 KWLLVNFDCSAMW 764 (764)
Q Consensus 752 K~l~~P~~~g~l~ 764 (764)
||++.|- +|+||
T Consensus 243 K~ygp~~-iGaLY 254 (428)
T KOG1549|consen 243 KIYGPPG-IGALY 254 (428)
T ss_pred cccCCCc-ceEEE
Confidence 9999665 99997
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.9e-18 Score=193.20 Aligned_cols=240 Identities=19% Similarity=0.187 Sum_probs=170.5
Q ss_pred hhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCccccccCCCCC-hHHHHHHHHHH-hhcccCccc---cCCc
Q psy13453 484 PGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSS-YPSIVGDMLSG-AFGLIGFSW---LSSP 558 (764)
Q Consensus 484 p~~l~~~l~~~lP~~g~~~~~il~~l~~~i~~~~~~~~~P~~~~~~~~~~~-~~~~lad~l~~-~lN~n~~~~---~~sp 558 (764)
|..++..-+..+|+ .+-.++++++.+.-..+.. .. ..|.+.-.+... ++.+...++.. .+ .+...| ..+.
T Consensus 35 p~~~~~~~~~~~~~--~se~~~~~~~~~l~~~n~~-~~-~~~~g~G~~~~~~~p~i~~~~~~~~~~-~~~tpYq~e~~sq 109 (481)
T PRK04366 35 PEELLRKEPPELPE--VSELEVVRHYTRLSQKNYG-VD-TGFYPLGSCTMKYNPKINEKVARLPGF-AELHPLQPEETVQ 109 (481)
T ss_pred CHHHhcCCCCCCCC--CCHHHHHHHHHHHHhcCCC-CC-cceecCcccCCCCCHHHHHHHHhCcch-hcCCCCCChhhhh
Confidence 34443222345676 8889999999987554432 11 255555433333 33444444443 13 344445 3566
Q ss_pred hHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecC
Q psy13453 559 ACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSD 638 (764)
Q Consensus 559 ~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~ 638 (764)
...++..++.+|+++++|++. ..++.++|+.++++++.++|...... +..++..|++++
T Consensus 110 G~lel~~~~~~~la~l~G~~~----------~~l~~~~GA~a~~~~l~~~r~~~~~~-----------Gd~~~~~Vlv~~ 168 (481)
T PRK04366 110 GALELMYELQEWLKEITGMDA----------VTLQPAAGAHGELTGLLMIRAYHEAR-----------GDTKRTEVIVPD 168 (481)
T ss_pred HHHHHHHHHHHHHHHHhCCCc----------eEEEeCcHHHHHHHHHHHHHHHhhcc-----------CcCCCCEEEEcC
Confidence 778999999999999999974 35666778888888777665432211 111234688899
Q ss_pred CcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc-ccHHHHHHHHHhcCCEE
Q psy13453 639 QSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF-DNLEELGPICQEYNIWL 717 (764)
Q Consensus 639 ~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai-Dpl~eIa~i~~~~glwL 717 (764)
.+|.+..+++...|++++.||++++|.+|+++|+++|.++ +.+|+++..+ .+|.+ +|+++|+++|+++|+|+
T Consensus 169 ~~hp~~~~~~~~~G~~vv~v~~~~~~~~D~e~L~~~i~~~------t~~V~v~~Pn-~tG~~~~dl~eI~~~a~~~gal~ 241 (481)
T PRK04366 169 SAHGTNPASAAMAGFKVVEIPSNEDGLVDLEALKAAVGED------TAALMLTNPN-TLGLFERNILEIAEIVHEAGGLL 241 (481)
T ss_pred CccHhHHHHHHHcCCEEEEeecCCCCCcCHHHHHhhcccC------CeEEEEeCCC-CccccchHHHHHHHHHHHcCCEE
Confidence 9999999999999999999999988999999999999654 3467777777 78988 69999999999999999
Q ss_pred EEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCce
Q psy13453 718 HVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCS 761 (764)
Q Consensus 718 HVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g 761 (764)
|||+|+..+.+.. ... |--.||+++.|+||||++|+++|
T Consensus 242 iVD~a~~~~~~g~--~~~---~~~GaD~~~~~~hK~l~~P~g~G 280 (481)
T PRK04366 242 YYDGANLNAILGK--ARP---GDMGFDVVHLNLHKTFSTPHGGG 280 (481)
T ss_pred EEEecChhhhccc--CCc---cccCCCEEEEechhhcCCCCCCC
Confidence 9999987553321 111 12246999999999999999886
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-18 Score=193.67 Aligned_cols=204 Identities=19% Similarity=0.198 Sum_probs=153.7
Q ss_pred CccccccCCCCChHHHHHHHHHHhhc-----ccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCCh
Q psy13453 523 PQFNAYFPTGSSYPSIVGDMLSGAFG-----LIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTA 597 (764)
Q Consensus 523 P~~~~~~~~~~~~~~~lad~l~~~lN-----~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGg 597 (764)
+.||++-.+++.+..++..+ ..++. .....+..+..+....+++.+.+++++|.+++ ..+||+|+
T Consensus 4 ~~yld~aa~~~~~~~v~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~---------~v~~~~g~ 73 (402)
T TIGR02006 4 PIYLDYAATTPVDPRVAEKM-MPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSR---------EIVFTSGA 73 (402)
T ss_pred cEEeeCCcCCCCCHHHHHHH-HHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCC---------eEEEeCCH
Confidence 57888887777666654433 33331 11111222333456677888999999998653 58999999
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHh---CCCceEEEecCCCCcccHHHHHHH
Q psy13453 598 SEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAII---GDVPVRQLRSDDNGVLRGDALLTA 674 (764)
Q Consensus 598 TeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~---lGl~v~~Vp~d~~g~md~~~Le~~ 674 (764)
|+++..++.+.+....+ ++..|+++..+|.|+.+++.. .|++++.||++++|.+|+++|+++
T Consensus 74 t~a~~~~l~~l~~~~~~---------------~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~ 138 (402)
T TIGR02006 74 TESNNLAIKGIAHFYKS---------------KGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKSNGLIDLEELKAA 138 (402)
T ss_pred HHHHHHHHHHHHHhhcC---------------CCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHh
Confidence 99998887655432111 123588899999998877643 589999999999999999999998
Q ss_pred HHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccC
Q psy13453 675 VKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWL 754 (764)
Q Consensus 675 I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l 754 (764)
|.+. +.+|+.+..++.+|.+.|+++|+++|+++|+|+|||+|++.+....+ ++++ .+|++++++||++
T Consensus 139 l~~~------~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~~~~-----~~~~-~~D~~~~s~~K~~ 206 (402)
T TIGR02006 139 IRDD------TILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKIPIN-----VNEL-KVDLMSISGHKIY 206 (402)
T ss_pred cCCC------CEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCCcccC-----cccc-CCCEEEEehhhhc
Confidence 8643 45888899999999999999999999999999999999998766442 2222 4699999999976
Q ss_pred CCCcCceeeC
Q psy13453 755 LVNFDCSAMW 764 (764)
Q Consensus 755 ~~P~~~g~l~ 764 (764)
.|.|+|++|
T Consensus 207 -gp~G~G~l~ 215 (402)
T TIGR02006 207 -GPKGIGALY 215 (402)
T ss_pred -CCCceEEEE
Confidence 599999985
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.9e-18 Score=189.41 Aligned_cols=201 Identities=19% Similarity=0.164 Sum_probs=153.3
Q ss_pred cccccCCCCChHHHHHHHHHHhh----cccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHH
Q psy13453 525 FNAYFPTGSSYPSIVGDMLSGAF----GLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEA 600 (764)
Q Consensus 525 ~~~~~~~~~~~~~~lad~l~~~l----N~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeA 600 (764)
||++-.+++.+..++.. +..++ .+....+..++.+..+.+++.+++++++|.++ ...+||+|+|++
T Consensus 2 yld~aa~~~~~~~v~~a-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~---------~~i~~t~~~t~a 71 (379)
T TIGR03402 2 YLDNNATTRVDPEVLEA-MLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEP---------DEIIFTSGGTES 71 (379)
T ss_pred cCCCcCCCCCCHHHHHH-HHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCC---------CeEEEeCcHHHH
Confidence 77787777766665433 33222 22222233446677888899999999999865 368999999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHh---CCCceEEEecCCCCcccHHHHHHHHHH
Q psy13453 601 TLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAII---GDVPVRQLRSDDNGVLRGDALLTAVKE 677 (764)
Q Consensus 601 Nl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~---lGl~v~~Vp~d~~g~md~~~Le~~I~~ 677 (764)
+..++.+..... + ++.+|+++..+|.++...+.. .|++++.||++.+|.+|+++|+++|++
T Consensus 72 ~~~al~~~~~~~-~---------------~~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~g~~~~~~l~~~i~~ 135 (379)
T TIGR03402 72 DNTAIKSALAAQ-P---------------EKRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDEEGRLDLEELRAAITD 135 (379)
T ss_pred HHHHHHHHHHhc-C---------------CCCeEEEcccccHHHHHHHHHHHHcCCEEEEEccCCCCcCCHHHHHHhcCC
Confidence 998887654321 1 123588899999988766543 599999999998899999999999865
Q ss_pred hhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 678 DLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 678 ~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
+ +.+|+.+..++.+|.+.|+++|+++|+++|+++|||++++.+....+ +..+ .+|.+++++|| ++.|
T Consensus 136 ~------~~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g~~~~~-----~~~~-~~D~~~~s~~K-~~gp 202 (379)
T TIGR03402 136 D------TALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGKIPID-----LKEM-NIDMLSLSGHK-LHGP 202 (379)
T ss_pred C------cEEEEEEcccCCeeecccHHHHHHHHHHcCCEEEEECcccccccccC-----cccC-CCCEEEEcHHH-cCCC
Confidence 3 45888889999999999999999999999999999999987654432 1211 46999999999 6679
Q ss_pred cCceeeC
Q psy13453 758 FDCSAMW 764 (764)
Q Consensus 758 ~~~g~l~ 764 (764)
.|+|++|
T Consensus 203 ~G~g~l~ 209 (379)
T TIGR03402 203 KGVGALY 209 (379)
T ss_pred CceEEEE
Confidence 9999986
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.7e-18 Score=184.83 Aligned_cols=203 Identities=18% Similarity=0.125 Sum_probs=151.0
Q ss_pred cccccCCCCChHHHHHHHHHHhhc---ccCc--cccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHH
Q psy13453 525 FNAYFPTGSSYPSIVGDMLSGAFG---LIGF--SWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASE 599 (764)
Q Consensus 525 ~~~~~~~~~~~~~~lad~l~~~lN---~n~~--~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTe 599 (764)
||++-..++.+..+... +..++. .+.. .+..+.....+..++.+++++++|.+++ ..+||+|+|+
T Consensus 1 yld~a~~~~~~~~v~~a-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~---------~v~~~~g~t~ 70 (353)
T TIGR03235 1 YLDHNATTPIDPAVAEA-MLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTE---------EVIFTSGATE 70 (353)
T ss_pred CCCCCCCCCCCHHHHHH-HHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCC---------eEEEeCCHHH
Confidence 56666666655554333 333321 1111 2233445667788899999999998753 5899999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHH---hCCCceEEEecCCCCcccHHHHHHHHH
Q psy13453 600 ATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAI---IGDVPVRQLRSDDNGVLRGDALLTAVK 676 (764)
Q Consensus 600 ANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~---~lGl~v~~Vp~d~~g~md~~~Le~~I~ 676 (764)
++..++.+...... . ..+..|+++..+|.|+..+.. ..|++++.||+++++.+|+++|+++++
T Consensus 71 a~~~~l~~l~~~~~-~-------------~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~l~~~l~ 136 (353)
T TIGR03235 71 SNNLAILGLARAGE-Q-------------KGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVDESGRIDVDELADAIR 136 (353)
T ss_pred HHHHHHHHHHHhcc-c-------------CCCCeeeEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhCC
Confidence 98887765433210 0 012368899999999876643 468899999999889999999999885
Q ss_pred HhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCC
Q psy13453 677 EDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLV 756 (764)
Q Consensus 677 ~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~ 756 (764)
+. +.+|+.+..++.+|.+.|+++|.++|+++|+|+|||+|++.+....+- +. ..+|.+++++|||+ .
T Consensus 137 ~~------~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~~~~~-----~~-~~~D~~~~s~~K~~-g 203 (353)
T TIGR03235 137 PD------TLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKITVDL-----SA-DRIDLISCSGHKIY-G 203 (353)
T ss_pred CC------CEEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCCccccc-----cc-cCCCEEEeehhhcC-C
Confidence 42 458889999999999999999999999999999999999887665431 11 14699999999985 6
Q ss_pred CcCceeeC
Q psy13453 757 NFDCSAMW 764 (764)
Q Consensus 757 P~~~g~l~ 764 (764)
|.|+|++|
T Consensus 204 p~g~g~l~ 211 (353)
T TIGR03235 204 PKGIGALV 211 (353)
T ss_pred CCceEEEE
Confidence 99999885
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-17 Score=186.02 Aligned_cols=204 Identities=20% Similarity=0.226 Sum_probs=150.1
Q ss_pred CccccccCCCCChHHHHHHHHHHhh---cccCcccc----CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeC
Q psy13453 523 PQFNAYFPTGSSYPSIVGDMLSGAF---GLIGFSWL----SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQS 595 (764)
Q Consensus 523 P~~~~~~~~~~~~~~~lad~l~~~l---N~n~~~~~----~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTs 595 (764)
+.||++-.+++.+..++.. +..++ +....... .+-.+...-.++.+++++++|.+.+ ..+||+
T Consensus 4 ~iyld~a~~~~~~~~v~~a-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~---------~v~~~~ 73 (404)
T PRK14012 4 PIYLDYSATTPVDPRVAEK-MMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPR---------EIVFTS 73 (404)
T ss_pred eEEecCcCCCCCCHHHHHH-HHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcC---------eEEEeC
Confidence 4688888777766665443 33333 22111111 1111234455678899999998653 579999
Q ss_pred ChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHh---CCCceEEEecCCCCcccHHHHH
Q psy13453 596 TASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAII---GDVPVRQLRSDDNGVLRGDALL 672 (764)
Q Consensus 596 GgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~---lGl~v~~Vp~d~~g~md~~~Le 672 (764)
|||+++.+++.+......+ ++..|++++.+|.++..++.. .|++++.|++|++|.+|+++|+
T Consensus 74 g~t~al~~~l~~l~~~~~~---------------~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~~g~~d~~~l~ 138 (404)
T PRK14012 74 GATESDNLAIKGAAHFYQK---------------KGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQSNGIIDLEKLE 138 (404)
T ss_pred CHHHHHHHHHHHHHHhhcC---------------CCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccCCCCcCCHHHHH
Confidence 9999999888765432211 123588899999998777654 5999999999999999999999
Q ss_pred HHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCc
Q psy13453 673 TAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHK 752 (764)
Q Consensus 673 ~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK 752 (764)
++|+++ +.+|+.+..++.+|.+.|+++|+++|+++|+++|+|+|++.+....+ +..+ .+|.+++++||
T Consensus 139 ~~i~~~------t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~~~~-----~~~~-~~D~~~~s~~K 206 (404)
T PRK14012 139 AAMRDD------TILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKVPID-----LSKL-KVDLMSFSAHK 206 (404)
T ss_pred HhcCCC------CEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcchhcCCcccC-----cccC-CCCEEEEehhh
Confidence 999654 34888999999999999999999999999999999999998765432 1111 46999999999
Q ss_pred cCCCCcCceeeC
Q psy13453 753 WLLVNFDCSAMW 764 (764)
Q Consensus 753 ~l~~P~~~g~l~ 764 (764)
++ .|.++|++|
T Consensus 207 ~~-gp~g~G~l~ 217 (404)
T PRK14012 207 IY-GPKGIGALY 217 (404)
T ss_pred cc-CCCceEEEE
Confidence 55 588999875
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.4e-17 Score=180.23 Aligned_cols=203 Identities=16% Similarity=0.107 Sum_probs=152.3
Q ss_pred cccccCCCCChHHHHHHHHHH---hh-cccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHH
Q psy13453 525 FNAYFPTGSSYPSIVGDMLSG---AF-GLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEA 600 (764)
Q Consensus 525 ~~~~~~~~~~~~~~lad~l~~---~l-N~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeA 600 (764)
||++-..++.+..++..+... .+ |+....+..++....+..++.+++++++|.+.. ...++|+|+|++
T Consensus 2 yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------~~v~~~~g~t~a 73 (373)
T cd06453 2 YLDNAATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSP--------DEIIFTRNTTEA 73 (373)
T ss_pred cccCccccCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCC--------CeEEEeCCHHHH
Confidence 566666666555544433322 22 333345666778888999999999999998721 357899999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhH----HHHHHhCCCceEEEecCCCCcccHHHHHHHHH
Q psy13453 601 TLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV----EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVK 676 (764)
Q Consensus 601 Nl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv----~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~ 676 (764)
+..++.+..... .++..|++++.+|++. .+.++..|++++.||++.++++|+++|++.|.
T Consensus 74 ~~~~~~~l~~~~----------------~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~ 137 (373)
T cd06453 74 INLVAYGLGRAN----------------KPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDDDGQLDLEALEKLLT 137 (373)
T ss_pred HHHHHHHhhhcC----------------CCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCCCCCcCHHHHHHHhc
Confidence 877776543210 0123588899999885 44456789999999999899999999999996
Q ss_pred HhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCC
Q psy13453 677 EDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLV 756 (764)
Q Consensus 677 ~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~ 756 (764)
++ +-+|+.+..+|.+|.++|+++|.++|++||+|+|+|+|++.+....+ +..+ .+|++++++|||++.
T Consensus 138 ~~------~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~-----~~~~-~~d~~~~s~~K~~~~ 205 (373)
T cd06453 138 ER------TKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGHMPVD-----VQDL-GCDFLAFSGHKMLGP 205 (373)
T ss_pred CC------ceEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCceeee-----cccc-CCCEEEeccccccCC
Confidence 53 44888899999999999999999999999999999999987654332 1111 469999999999886
Q ss_pred CcCceeeC
Q psy13453 757 NFDCSAMW 764 (764)
Q Consensus 757 P~~~g~l~ 764 (764)
.++|+++
T Consensus 206 -~g~g~~~ 212 (373)
T cd06453 206 -TGIGVLY 212 (373)
T ss_pred -CCcEEEE
Confidence 7888764
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.3e-17 Score=181.17 Aligned_cols=203 Identities=17% Similarity=0.179 Sum_probs=153.8
Q ss_pred cccccCCCCChHHHHHH---HHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHH
Q psy13453 525 FNAYFPTGSSYPSIVGD---MLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEAT 601 (764)
Q Consensus 525 ~~~~~~~~~~~~~~lad---~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeAN 601 (764)
||++-.+++.+..++-. ++...+.+....+..+.....+.+++.+++++++|.+++ ..+||+|+|++|
T Consensus 3 yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~---------~i~~~~g~t~a~ 73 (381)
T PRK02948 3 YLDYAATTPMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQ---------GIYFTSGGTESN 73 (381)
T ss_pred eccCCCCCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCCC---------eEEEeCcHHHHH
Confidence 67777666665555433 333323333445556677778889999999999998653 578999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHH---HhCCCceEEEecCCCCcccHHHHHHHHHHh
Q psy13453 602 LVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSA---IIGDVPVRQLRSDDNGVLRGDALLTAVKED 678 (764)
Q Consensus 602 l~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa---~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~ 678 (764)
..++.+....... ++.+|+++..+|.|+..++ +..|.+++.||++++|.+|+++|++.+++.
T Consensus 74 ~~~~~~~~~~~~~---------------~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~ 138 (381)
T PRK02948 74 YLAIQSLLNALPQ---------------NKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDKSGLIRLVDLERAITPD 138 (381)
T ss_pred HHHHHHHHHhccC---------------CCCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeCCCCCCCHHHHHHhcCCC
Confidence 8887766432110 1236888999999987764 446889999999988999999999988543
Q ss_pred hhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCc
Q psy13453 679 LAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNF 758 (764)
Q Consensus 679 ~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~ 758 (764)
+.+|+.+..++.+|.+.|+++|.++|+++|+|+|||++++.+..... +... .+|.++.++||+++ |.
T Consensus 139 ------~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~~~~~-----~~~~-~~d~~~~s~~K~~g-p~ 205 (381)
T PRK02948 139 ------TVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGKLPID-----VFEM-GIDSLSVSAHKIYG-PK 205 (381)
T ss_pred ------CEEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEEChhhccccccC-----cccC-CCCEEEecHHhcCC-CC
Confidence 45899999999999999999999999999999999998876543322 1111 46999999999765 99
Q ss_pred CceeeC
Q psy13453 759 DCSAMW 764 (764)
Q Consensus 759 ~~g~l~ 764 (764)
|+|++|
T Consensus 206 G~G~l~ 211 (381)
T PRK02948 206 GVGAVY 211 (381)
T ss_pred cEEEEE
Confidence 999875
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=8e-17 Score=183.12 Aligned_cols=233 Identities=15% Similarity=0.114 Sum_probs=165.2
Q ss_pred ChhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCccccccCCCCChHHHH------HHHHHHhhcccCccccC
Q psy13453 483 EPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIV------GDMLSGAFGLIGFSWLS 556 (764)
Q Consensus 483 ~p~~l~~~l~~~lP~~g~~~~~il~~l~~~i~~~~~~~~~P~~~~~~~~~~~~~~~l------ad~l~~~lN~n~~~~~~ 556 (764)
-|.+++...+.++|+.+ +.+++++++.+....+.....|+++++.-..+...+..+ +++++. +|.+.. +.
T Consensus 31 ~p~~~~~~~~~~lp~~~-~~~~v~~~~~~~~~~~~~~~~~~~~lg~g~~~~~~p~~~~~~~~~~~~~~~-y~~~~~--~~ 106 (447)
T PRK00451 31 IPEELRLKRPLDLPPGL-SEMELLRHLRELAAKNKTAEEYPSFLGAGAYDHYIPAVVDHIISRSEFYTA-YTPYQP--EI 106 (447)
T ss_pred CCHHHHhCCCCCCCCCC-CHHHHHHHHHHHHhcCCCcCcCcccCcccccCCcCcHHHHHHHhchhHHHh-cCCCCC--cc
Confidence 47778877788899976 999999999997755554455788877432222222222 233333 443222 34
Q ss_pred CchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEe
Q psy13453 557 SPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYT 636 (764)
Q Consensus 557 sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~ 636 (764)
++...+.+.+...|+++++|.+.+ .+++|+|||+++ .++..|+... ++..|++
T Consensus 107 ~~g~~~~~~e~~~~la~l~g~~~~---------~v~~~~g~t~~~-~~~~~a~~~~-----------------~g~~Vlv 159 (447)
T PRK00451 107 SQGTLQAIFEYQTMICELTGMDVA---------NASMYDGATALA-EAALMAVRIT-----------------KRKKVLV 159 (447)
T ss_pred chHHHHHHHHHHHHHHHHhCCCcc---------eEEecCcHHHHH-HHHHHHHHhc-----------------CCCEEEE
Confidence 566778888888999999999763 578999999754 4444444210 1225788
Q ss_pred cCCcchhHHHHHHh----CCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHh
Q psy13453 637 SDQSNSSVEKSAII----GDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQE 712 (764)
Q Consensus 637 S~~aH~Sv~kAa~~----lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~ 712 (764)
++.+|.+..+++.. .|++++.||++++ ++|+++|+++|.++ +.+|+++.. |.+|.++|+++|+++|++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~-~~d~~~l~~~i~~~------t~~v~l~~p-n~tG~v~~l~~I~~~a~~ 231 (447)
T PRK00451 160 SGAVHPEYREVLKTYLKGQGIEVVEVPYEDG-VTDLEALEAAVDDD------TAAVVVQYP-NFFGVIEDLEEIAEIAHA 231 (447)
T ss_pred eCccCHHHHHHHHHHHHhCCcEEEEecCCCC-CCCHHHHHHhcCCC------eEEEEEECC-CCCCeeCCHHHHHHHHHH
Confidence 99999999988765 6899999999887 99999999999654 347777776 779999999999999999
Q ss_pred cCCEEEE--eccccccccccchhhhhhcCCCcccEEEEcCCcc-----CCCCcCceee
Q psy13453 713 YNIWLHV--DAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKW-----LLVNFDCSAM 763 (764)
Q Consensus 713 ~glwLHV--DaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~-----l~~P~~~g~l 763 (764)
+|+|++| |+...+ .+..+ +--.+|.++.+.||| ++.| ++|++
T Consensus 232 ~~~~~iv~~d~~~~g-~~~~~-------~~~~~D~~~~s~~k~~~~~~~~Gp-g~G~l 280 (447)
T PRK00451 232 GGALFIVGVDPVSLG-LLKPP-------GEYGADIVVGEGQPLGIPLSFGGP-YLGFF 280 (447)
T ss_pred CCCEEEEEcChHHhc-cCCCc-------ccCCCCEEEECCCcCCCCCCCCCC-CchHH
Confidence 9999999 654322 22111 122569999999997 4444 56654
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-16 Score=176.91 Aligned_cols=204 Identities=14% Similarity=0.091 Sum_probs=151.4
Q ss_pred ccccccCCCCChHHHHHHHHHHhh-----cccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChH
Q psy13453 524 QFNAYFPTGSSYPSIVGDMLSGAF-----GLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTAS 598 (764)
Q Consensus 524 ~~~~~~~~~~~~~~~lad~l~~~l-----N~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgT 598 (764)
.||++-..++.+..++ +.+..++ |.+...+..++.......++.+.+++++|.++. ...+||+|+|
T Consensus 20 ~yld~~~~~~~p~~v~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~--------~~v~~~~g~t 90 (403)
T TIGR01979 20 VYLDSAATSQKPQQVI-DAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASD--------EEIVFTRGTT 90 (403)
T ss_pred EEEeCccccCCCHHHH-HHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCC--------CeEEEeCCHH
Confidence 5788887776555544 4444443 222233444555666777899999999998731 3689999999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhH----HHHHHhCCCceEEEecCCCCcccHHHHHHH
Q psy13453 599 EATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV----EKSAIIGDVPVRQLRSDDNGVLRGDALLTA 674 (764)
Q Consensus 599 eANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv----~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~ 674 (764)
+++..++.+...... .++..|++++.+|.|. .+++...|+.++.||++++|.+|+++|++.
T Consensus 91 ~~l~~~~~~~~~~~~---------------~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~ 155 (403)
T TIGR01979 91 ESINLVAYSWGDSNL---------------KAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDDDGTLDLDDLEKL 155 (403)
T ss_pred HHHHHHHHHhhhhcC---------------CCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecCCCCCCCHHHHHHH
Confidence 997665554322111 1123688899999874 456677899999999999999999999999
Q ss_pred HHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccC
Q psy13453 675 VKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWL 754 (764)
Q Consensus 675 I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l 754 (764)
+.+. +-+|+.+..++.+|.+.|+++|+++|++||+|+|||+||+.+....+ +... .+|.++.++||++
T Consensus 156 i~~~------~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~~~~-----~~~~-~~d~~~~s~~K~~ 223 (403)
T TIGR01979 156 LTEK------TKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVD-----VQAL-DCDFYVFSGHKMY 223 (403)
T ss_pred hccC------CeEEEEEcccccccccCCHHHHHHHHHHcCCEEEEEchhhcCccccC-----cccc-CCCEEEEeccccc
Confidence 8653 55888999999999999999999999999999999999987654322 1112 3699999999976
Q ss_pred CCCcCceeeC
Q psy13453 755 LVNFDCSAMW 764 (764)
Q Consensus 755 ~~P~~~g~l~ 764 (764)
+ |.|+|++|
T Consensus 224 g-p~G~g~l~ 232 (403)
T TIGR01979 224 G-PTGIGVLY 232 (403)
T ss_pred C-CCCceEEE
Confidence 5 98999875
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.2e-16 Score=172.80 Aligned_cols=203 Identities=19% Similarity=0.139 Sum_probs=156.0
Q ss_pred cccccCCCCChHHHHHHHHHHh---h-cccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHH
Q psy13453 525 FNAYFPTGSSYPSIVGDMLSGA---F-GLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEA 600 (764)
Q Consensus 525 ~~~~~~~~~~~~~~lad~l~~~---l-N~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeA 600 (764)
||++-.+++.+..++-.+.... . |.+...+..+....++-+++.+.+++++|.+++ ...+||+|+|++
T Consensus 2 Yld~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~--------~~v~~~~~~t~a 73 (371)
T PF00266_consen 2 YLDNAGTGPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPD--------EEVVFTSNGTEA 73 (371)
T ss_dssp EEBTSSS-B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTT--------EEEEEESSHHHH
T ss_pred EeeCCCccCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccc--------cccccccccchh
Confidence 5666666666666554443332 2 222355566777888889999999999999872 257899999998
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHH----HHhCCCceEEEecCCCCcccHHHHHHHHH
Q psy13453 601 TLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKS----AIIGDVPVRQLRSDDNGVLRGDALLTAVK 676 (764)
Q Consensus 601 Nl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kA----a~~lGl~v~~Vp~d~~g~md~~~Le~~I~ 676 (764)
+..++...+.... ++..|+++...|+|...+ ++..|++++.||.+.++.+|+++++++|.
T Consensus 74 ~~~~~~~l~~~~~----------------~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~ 137 (371)
T PF00266_consen 74 LNAVASSLLNPLK----------------PGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALN 137 (371)
T ss_dssp HHHHHHHHHHHGT----------------TTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHH
T ss_pred hhhhhhccccccc----------------cccccccccccccccccccccccccchhhhccccccccchhhhhhhhhhhc
Confidence 7777766654321 123588899999998733 44679999999999999999999999997
Q ss_pred HhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCC
Q psy13453 677 EDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLV 756 (764)
Q Consensus 677 ~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~ 756 (764)
++ +.+|+.++.++.+|.+.|+++|+++|+++|+|++|||+++.+.+..+ ++.+ .+|.+++++|| ++.
T Consensus 138 ~~------~~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~~id-----~~~~-~~D~~~~s~~K-l~g 204 (371)
T PF00266_consen 138 PD------TRLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQSAGCVPID-----LDEL-GADFLVFSSHK-LGG 204 (371)
T ss_dssp TT------ESEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTTTTTSS-------TTTT-TESEEEEESTS-TTS
T ss_pred cc------cceEEeecccccccEEeeeceehhhhhccCCceeEechhcccccccc-----cccc-ccceeeecccc-cCC
Confidence 65 44999999999999999999999999999999999999999877654 2222 46999999999 888
Q ss_pred CcCceeeC
Q psy13453 757 NFDCSAMW 764 (764)
Q Consensus 757 P~~~g~l~ 764 (764)
|.|+|++|
T Consensus 205 p~G~g~l~ 212 (371)
T PF00266_consen 205 PPGLGFLY 212 (371)
T ss_dssp SSTEEEEE
T ss_pred CCchhhhe
Confidence 99999986
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-16 Score=175.86 Aligned_cols=167 Identities=17% Similarity=0.230 Sum_probs=133.2
Q ss_pred hHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecC
Q psy13453 559 ACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSD 638 (764)
Q Consensus 559 ~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~ 638 (764)
.......++.+++++++|.++. ...+||+|+|+++..++.+. .. ++..|+++.
T Consensus 41 ~~~~~~~~~~~~la~~~~~~~~--------~~v~~~~g~t~al~~~~~~~----~~---------------~gd~vl~~~ 93 (376)
T TIGR01977 41 RASREVEETRQLLAKLFNAPSS--------AHVVFTNNATTALNIALKGL----LK---------------EGDHVITTP 93 (376)
T ss_pred HHHHHHHHHHHHHHHHhCcCCC--------CeEEEeCCHHHHHHHHHHhc----cC---------------CCCEEEECc
Confidence 3456777888999999998642 25789999999887665431 11 122577888
Q ss_pred CcchhHHH----HHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcC
Q psy13453 639 QSNSSVEK----SAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYN 714 (764)
Q Consensus 639 ~aH~Sv~k----Aa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~g 714 (764)
.+|.++.. .++..|..++.|+++.++.+|+++|++++++. +.+|+.+..++.+|.+.|+++|.++|+++|
T Consensus 94 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~------~~~v~~~~~~n~tG~~~~~~~i~~l~~~~~ 167 (376)
T TIGR01977 94 MEHNSVARPLECLKEQIGVEITIVKCDNEGLISPERIKRAIKTN------TKLIVVSHASNVTGTILPIEEIGELAQENG 167 (376)
T ss_pred chhhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHhcCCC------CeEEEEECCCCCccccCCHHHHHHHHHHcC
Confidence 89988654 45556999999999988999999999998543 558889999999999999999999999999
Q ss_pred CEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 715 IWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 715 lwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
+|++||+|++.+....+-. . ..+|++++++|||++.|.|+|++|
T Consensus 168 ~~livD~a~~~g~~~~~~~---~---~~~D~~~~s~~K~l~~p~g~g~l~ 211 (376)
T TIGR01977 168 IFFILDAAQTAGVIPIDMT---E---LAIDMLAFTGHKGLLGPQGTGGLY 211 (376)
T ss_pred CEEEEEhhhccCccCCCch---h---cCCCEEEecccccccCCCCceEEE
Confidence 9999999999876644311 1 246999999999999999999875
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.70 E-value=4e-16 Score=173.61 Aligned_cols=205 Identities=18% Similarity=0.166 Sum_probs=144.3
Q ss_pred cccccCCCCChHHHHHHHHHHhhc----ccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHH
Q psy13453 525 FNAYFPTGSSYPSIVGDMLSGAFG----LIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEA 600 (764)
Q Consensus 525 ~~~~~~~~~~~~~~lad~l~~~lN----~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeA 600 (764)
||++-.+++.+..+ -+.+..+++ +....+..+.......++.+..+++.+|..+. ...+||+|+|++
T Consensus 2 yld~aa~~~~~~~v-~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~--------~~i~~t~g~tea 72 (382)
T TIGR03403 2 YLDNNATTMLDPKV-KELMDPFFCDIYGNPNSLHQFGTATHPAIAEALDKLYKGINARDL--------DDIIITSCATES 72 (382)
T ss_pred cccCcCCCCCCHHH-HHHHHHHHHhcCcCCccccHHHHHHHHHHHHHHHHHHHHcCcCCC--------CeEEEeCCHHHH
Confidence 67777666665543 333433332 11222222333444555566666667776221 368899999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHH---hCCCceEEEecCCCCcccHHHHHHHHHH
Q psy13453 601 TLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAI---IGDVPVRQLRSDDNGVLRGDALLTAVKE 677 (764)
Q Consensus 601 Nl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~---~lGl~v~~Vp~d~~g~md~~~Le~~I~~ 677 (764)
+.+++.+.......+ .++..|+++..+|.|+..++. ..|++++.||++++|.+|+++|+++|.+
T Consensus 73 l~~~~~~~~~~~~~~-------------~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~~~g~~d~~~l~~~i~~ 139 (382)
T TIGR03403 73 NNWVLKGVYFDEILK-------------GGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPINEQGTITAEQVREAITE 139 (382)
T ss_pred HHHHHHHHHHhhccc-------------CCCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecCCCCCCCHHHHHHhccc
Confidence 888776542211100 012358889999999877754 4789999999998999999999999865
Q ss_pred hhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 678 DLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 678 ~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
. +-+|+.+..++.+|.+.|+++|+++|+++|+|+|||+|++.+....+- .. ..+|.+++++|||+ .|
T Consensus 140 ~------t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~~~~~~-----~~-~~~D~~~~s~~K~~-gp 206 (382)
T TIGR03403 140 K------TALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKIPVDV-----QK-AGVDFLSFSAHKFH-GP 206 (382)
T ss_pred C------CeEEEEEcccCCCccccCHHHHHHHHHHcCCEEEEechhhcCCCccCc-----cc-cCCCEEEEcchhhC-CC
Confidence 4 347888999999999999999999999999999999999876544321 11 14699999999985 59
Q ss_pred cCceeeC
Q psy13453 758 FDCSAMW 764 (764)
Q Consensus 758 ~~~g~l~ 764 (764)
.|+|++|
T Consensus 207 ~G~g~l~ 213 (382)
T TIGR03403 207 KGVGGLY 213 (382)
T ss_pred CceEEEE
Confidence 9999875
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5e-16 Score=173.58 Aligned_cols=167 Identities=13% Similarity=0.070 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
....++.+.+++++|.+. .+||+|+|++|..++.+.. . ++..|+++..+|
T Consensus 63 ~~~~~l~~~lA~~~g~~~-----------~~~~~g~t~a~~~al~~l~----~---------------~gd~Vlv~~~~h 112 (387)
T PRK09331 63 PPIADFHEDLAEFLGMDE-----------ARVTHGAREGKFAVMHSLC----K---------------KGDYVVLDGLAH 112 (387)
T ss_pred hHHHHHHHHHHHHhCCCc-----------EEEeCCHHHHHHHHHHHhc----C---------------CCCEEEECCCch
Confidence 345667778888888754 5799999999988776542 1 122578899999
Q ss_pred hhHHHHHHhCCCceEEEec--CCCCcccHHHHHHHHHHhhh-cCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEE
Q psy13453 642 SSVEKSAIIGDVPVRQLRS--DDNGVLRGDALLTAVKEDLA-KGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLH 718 (764)
Q Consensus 642 ~Sv~kAa~~lGl~v~~Vp~--d~~g~md~~~Le~~I~~~~~-~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLH 718 (764)
+++..++...|++++.+|+ ++++.+|+++|+++|++..+ .+..+-+|+.+..++.+|.+.|+++|+++|++||+++|
T Consensus 113 ~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~~li 192 (387)
T PRK09331 113 YTSYVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKVAKVAHEYGIPFL 192 (387)
T ss_pred HHHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHHHHHHHHHcCCEEE
Confidence 9999999999999999998 77899999999999976422 22346788889999999999999999999999999999
Q ss_pred EeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 719 VDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 719 VDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
||+||+.+.+..+-.. . .+|.++.++|||++.|.+.|+++
T Consensus 193 vD~a~~~g~~~~~~~~---~---g~D~~~~s~~K~l~~~~~~G~l~ 232 (387)
T PRK09331 193 LNGAYTVGRMPVDGKK---L---GADFIVGSGHKSMAASAPSGVLA 232 (387)
T ss_pred EECCcccCCcCCCHHH---c---CCCEEEeeCcccccCCCCEEEEE
Confidence 9999998765433211 1 35999999999999999999874
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.2e-16 Score=173.63 Aligned_cols=204 Identities=12% Similarity=0.023 Sum_probs=153.1
Q ss_pred ccccccCCCCChHHHHHHHHHHhh-----cccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChH
Q psy13453 524 QFNAYFPTGSSYPSIVGDMLSGAF-----GLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTAS 598 (764)
Q Consensus 524 ~~~~~~~~~~~~~~~lad~l~~~l-----N~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgT 598 (764)
.||++-.+++.+..++.. +..++ |.....+..++.+..+..++++.+++++|.++. ...+||+|+|
T Consensus 25 iYld~a~~~~~~~~v~~a-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~--------~~v~~t~g~t 95 (406)
T PRK09295 25 AYLDSAASAQKPSQVIDA-EAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSA--------EELVFVRGTT 95 (406)
T ss_pred EEEeCcccccCCHHHHHH-HHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCC--------CeEEEeCCHH
Confidence 799999888776665533 33333 332344555667778888899999999997321 3689999999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhH----HHHHHhCCCceEEEecCCCCcccHHHHHHH
Q psy13453 599 EATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV----EKSAIIGDVPVRQLRSDDNGVLRGDALLTA 674 (764)
Q Consensus 599 eANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv----~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~ 674 (764)
+++..++.+...... .++..|++++.+|.+. ...++..|++++.||++.+|.+|+++|+++
T Consensus 96 ~~l~~~~~~~~~~~~---------------~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~ 160 (406)
T PRK09295 96 EGINLVANSWGNSNV---------------RAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPAL 160 (406)
T ss_pred HHHHHHHHHhhhhcC---------------CCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCCCHHHHHHh
Confidence 997766543221111 1123588899999764 455667899999999998999999999999
Q ss_pred HHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccC
Q psy13453 675 VKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWL 754 (764)
Q Consensus 675 I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l 754 (764)
+.++ +-+|+.+..++.+|.+.|+++|+++|+++|+|+|||+||+.+....+ +..+ .+|.+++++||++
T Consensus 161 i~~~------t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~-----~~~~-~~D~~~~s~~K~~ 228 (406)
T PRK09295 161 FDER------TRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHHPVD-----VQAL-DCDFYVFSGHKLY 228 (406)
T ss_pred cCCC------cEEEEEecchhcccccCCHHHHHHHHHHcCCEEEEEcccccCccccC-----chhc-CCCEEEeehhhcc
Confidence 8653 45888999999999999999999999999999999999987654332 1111 4699999999954
Q ss_pred CCCcCceeeC
Q psy13453 755 LVNFDCSAMW 764 (764)
Q Consensus 755 ~~P~~~g~l~ 764 (764)
.|.|+|++|
T Consensus 229 -gp~G~G~l~ 237 (406)
T PRK09295 229 -GPTGIGILY 237 (406)
T ss_pred -CCCCcEEEE
Confidence 599999875
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-15 Score=168.97 Aligned_cols=205 Identities=12% Similarity=0.036 Sum_probs=150.8
Q ss_pred CccccccCCCCChHHHHHHHHHHhhc-----ccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCCh
Q psy13453 523 PQFNAYFPTGSSYPSIVGDMLSGAFG-----LIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTA 597 (764)
Q Consensus 523 P~~~~~~~~~~~~~~~lad~l~~~lN-----~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGg 597 (764)
-.||++-.+++.+..++ +.+..+++ .....+..++.......++.+.+++++|.++. ...+||+|+
T Consensus 17 ~iyld~a~~~~~p~~v~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~--------~~i~~t~g~ 87 (398)
T TIGR03392 17 TVYLDSAATALKPQAVI-DATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDA--------ENIVWTRGT 87 (398)
T ss_pred eEEeeCccccCCCHHHH-HHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCC--------CeEEEeCCh
Confidence 36899988877665543 44444432 11223334556667778899999999998421 357899999
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhH----HHHHHhCCCceEEEecCCCCcccHHHHHH
Q psy13453 598 SEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV----EKSAIIGDVPVRQLRSDDNGVLRGDALLT 673 (764)
Q Consensus 598 TeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv----~kAa~~lGl~v~~Vp~d~~g~md~~~Le~ 673 (764)
|+++..++.+...... .++-.|++++.+|+|. ...++..|++++.||++.++.+|+++|++
T Consensus 88 t~~l~~~~~~~~~~~~---------------~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~ 152 (398)
T TIGR03392 88 TESINLVAQSYARPRL---------------QPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPE 152 (398)
T ss_pred HHHHHHHHHHhhhccC---------------CCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHH
Confidence 9997776654321100 1123588899999774 45567789999999999889999999999
Q ss_pred HHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCcc
Q psy13453 674 AVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKW 753 (764)
Q Consensus 674 ~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~ 753 (764)
+|.+. +-+|+.+..++.+|.+.|+++|+++|+++|++++||++|+.+....+ +..+ .+|.+++++||+
T Consensus 153 ~i~~~------t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~-----~~~~-~~d~~~~s~~K~ 220 (398)
T TIGR03392 153 LLTPR------TRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHGPPD-----VQAL-DIDFYAFSGHKL 220 (398)
T ss_pred HhccC------ceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCCCCC-----hhhc-CCCEEEEecccc
Confidence 98654 34788899999999999999999999999999999999986544321 1112 369999999995
Q ss_pred CCCCcCceeeC
Q psy13453 754 LLVNFDCSAMW 764 (764)
Q Consensus 754 l~~P~~~g~l~ 764 (764)
+ .|.|+|++|
T Consensus 221 ~-gp~G~G~l~ 230 (398)
T TIGR03392 221 Y-GPTGIGVLY 230 (398)
T ss_pred c-CCCceEEEE
Confidence 5 588999875
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-15 Score=167.29 Aligned_cols=194 Identities=13% Similarity=0.001 Sum_probs=144.5
Q ss_pred ccCCCCChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHH
Q psy13453 528 YFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILV 607 (764)
Q Consensus 528 ~~~~~~~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~a 607 (764)
|.+++...+..+.+.+...+. ...++...++.+++.+++++++|.++. ...++|+|||+++..++.+
T Consensus 3 ~~~~~~~~~~~v~~a~~~~~~-----~~~~~~~~~~~~~~~~~la~~~g~~~~--------~~~~~~~~~t~al~~~~~~ 69 (356)
T cd06451 3 LIPGPSNVPPRVLKAMNRPML-----GHRSPEFLALMDEILEGLRYVFQTENG--------LTFLLSGSGTGAMEAALSN 69 (356)
T ss_pred ccCCCcCCCHHHHHHhCCCcc-----CCCCHHHHHHHHHHHHHHHHHhcCCCC--------CEEEEecCcHHHHHHHHHH
Confidence 344444444555555543221 124667778888999999999998542 2467899999998777754
Q ss_pred HHHHHhhhhccCCCCCccccccCceEEEecCCcchh--HHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCc
Q psy13453 608 AKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSS--VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIP 685 (764)
Q Consensus 608 AR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~S--v~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p 685 (764)
.. . ++-.|+++...|++ +...++..|.+++.||+++++.+|+++|++.+++. .|
T Consensus 70 ~~----~---------------~g~~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~-----~~ 125 (356)
T cd06451 70 LL----E---------------PGDKVLVGVNGVFGDRWADMAERYGADVDVVEKPWGEAVSPEEIAEALEQH-----DI 125 (356)
T ss_pred hC----C---------------CCCEEEEecCCchhHHHHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhcc-----CC
Confidence 31 1 11246667778887 45677889999999999988899999999999751 24
Q ss_pred eEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 686 CCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 686 ~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
-+|+++..++.+|.+.|+++|+++|+++|+|+++|++|+.+....+-. . ..+|.++.++|||++.|.++|+++
T Consensus 126 ~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~~~~~g~~~~~~~-----~-~~~d~~~~s~~K~l~~p~g~G~l~ 198 (356)
T cd06451 126 KAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGGEPFRMD-----E-WGVDVAYTGSQKALGAPPGLGPIA 198 (356)
T ss_pred CEEEEeccCCCcccccCHHHHHHHHHhcCCEEEEeeehhccCcccccc-----c-cCccEEEecCchhccCCCCcceeE
Confidence 578888889999999999999999999999999999987543322111 1 135999999999999999999874
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.1e-15 Score=165.08 Aligned_cols=220 Identities=13% Similarity=0.133 Sum_probs=163.6
Q ss_pred ccccCCcceeeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc
Q psy13453 11 AYPSETLSLLIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS 90 (764)
Q Consensus 11 ~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~ 90 (764)
.+.++. .|||+.|+++.+|+.. +.||+++++++|+++|+++|+++ +.+++.+.+++++|.++|+++|++
T Consensus 107 vl~~~~---~h~s~~~~~~~~g~~~---~~v~~~~~~~~d~~~l~~~i~~~-----~~~vi~~~~~~~tG~~~~l~~I~~ 175 (371)
T PRK13520 107 IVVPES---AHFSFDKAADMLGVEL---RRAPLDDDYRVDVKAVEDLIDDN-----TIGIVGIAGTTELGQVDPIPELSK 175 (371)
T ss_pred EEecCc---chHHHHHHHHHcCceE---EEecCCCCCcCCHHHHHHHHhhC-----CEEEEEEcCCcCCcccCCHHHHHH
Confidence 667776 7999999999999876 99999999999999999999864 234567889999999999999886
Q ss_pred -----CCCceeccccc---------------------------ccc------ceeeeecCCCcccccccccccc----CC
Q psy13453 91 -----NGPLKVGGVLR---------------------------RVY------SSCLVPRGQKSLRTTVLFHFLF----QH 128 (764)
Q Consensus 91 -----~~wlHVDa~l~---------------------------~~y------~s~ll~rd~~~l~~~~s~~~d~----~d 128 (764)
++|+|||++.. +++ ++++++++++.+.. +.....| ..
T Consensus 176 l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~~~-l~~~~~~~~~~~~ 254 (371)
T PRK13520 176 IALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMGLAPIPAGGILFRDESYLDA-LAVDTPYLTSKKQ 254 (371)
T ss_pred HHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCccccCccCCceEEEEcCHHHHHh-hcccCccccCCCC
Confidence 89999999531 111 01233332221111 0000001 12
Q ss_pred cccCCCC-cccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccC
Q psy13453 129 WQIPLGR-RFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGT 207 (764)
Q Consensus 129 ~tle~SR-r~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~ 207 (764)
+...|+| ...++.+|++|..++.+|+.++.++..++++++.+.|++. +|+++.+|..++++|++.+
T Consensus 255 ~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~v~~~~~~------------ 321 (371)
T PRK13520 255 ATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKER-GFEPVIEPVLNIVAFDDPN------------ 321 (371)
T ss_pred cceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhC-CCEEecCCCceEEEEecCC------------
Confidence 3345677 3456688999999999999999999999999999999987 8987778888899996531
Q ss_pred ccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13453 208 ISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 208 ~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~ 267 (764)
..++.++|.++|+.... ..+..++|+++ ++.+++++++.+++.++++.
T Consensus 322 --------~~~v~~~L~~~gi~v~~---~~~~~~iRis~-~~~~t~edi~~~~~~l~~~~ 369 (371)
T PRK13520 322 --------PDEVREKLRERGWRVSV---TRCPEALRIVC-MPHVTREHIENFLEDLKEVK 369 (371)
T ss_pred --------HHHHHHHHHHCCceecc---CCCCCEEEEEE-ECCCCHHHHHHHHHHHHHHh
Confidence 24678888888874332 23456899974 56889999999999998764
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-15 Score=167.99 Aligned_cols=205 Identities=12% Similarity=0.051 Sum_probs=151.9
Q ss_pred CccccccCCCCChHHHHHHHHHHhhcc-----cCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCCh
Q psy13453 523 PQFNAYFPTGSSYPSIVGDMLSGAFGL-----IGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTA 597 (764)
Q Consensus 523 P~~~~~~~~~~~~~~~lad~l~~~lN~-----n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGg 597 (764)
..||++-.+++.+..++. .+..++.. ....+..+........++++.+++++|.++. ...+||+|+
T Consensus 20 ~~yld~a~~~~~~~~v~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~--------~~i~~~~~~ 90 (401)
T PRK10874 20 GVYLDSAATALKPQAVIE-ATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDA--------KNIVWTRGT 90 (401)
T ss_pred eEEEeCCcccCCCHHHHH-HHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCC--------CEEEEECCH
Confidence 468999888876666553 33444422 1223334456677888899999999998321 367899999
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchh----HHHHHHhCCCceEEEecCCCCcccHHHHHH
Q psy13453 598 SEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSS----VEKSAIIGDVPVRQLRSDDNGVLRGDALLT 673 (764)
Q Consensus 598 TeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~S----v~kAa~~lGl~v~~Vp~d~~g~md~~~Le~ 673 (764)
|+++..++.+...... .++-.|++++.+|+| +.+.++..|++++.||++.++.+|+++|++
T Consensus 91 t~~i~~~~~~~~~~~~---------------~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~ 155 (401)
T PRK10874 91 TESINLVAQSYARPRL---------------QPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGADRLPDVDLLPE 155 (401)
T ss_pred HHHHHHHHHHhhhccC---------------CCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCCCCcCCHHHHHH
Confidence 9997666544311100 112358889999976 455667789999999999889999999999
Q ss_pred HHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCcc
Q psy13453 674 AVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKW 753 (764)
Q Consensus 674 ~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~ 753 (764)
+|.++ +-+|+.+..++.+|.+.|+++|+++|+++|++++||+||+.+....+ +..+ .+|.+++++||+
T Consensus 156 ~i~~~------t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~~~~-----~~~~-~~d~~~~s~~K~ 223 (401)
T PRK10874 156 LITPR------TRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHFPAD-----VQAL-DIDFYAFSGHKL 223 (401)
T ss_pred hcCcC------cEEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCcccccccCC-----chhc-CCCEEEEecccc
Confidence 99654 44888899999999999999999999999999999999986544322 1222 369999999995
Q ss_pred CCCCcCceeeC
Q psy13453 754 LLVNFDCSAMW 764 (764)
Q Consensus 754 l~~P~~~g~l~ 764 (764)
+.|.|+|++|
T Consensus 224 -~gp~G~G~l~ 233 (401)
T PRK10874 224 -YGPTGIGVLY 233 (401)
T ss_pred -cCCCccEEEE
Confidence 5688999875
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-14 Score=161.74 Aligned_cols=219 Identities=18% Similarity=0.140 Sum_probs=145.2
Q ss_pred HHHHHHHHHHcCCCCCCCCCccccccCCCCChHHHHHHHHHHh-hcccCccccC--CchHHHHHHHHHHHHHHHcCCCcc
Q psy13453 504 HIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGA-FGLIGFSWLS--SPACTELEVLVMNWLGKALGLPEE 580 (764)
Q Consensus 504 ~il~~l~~~i~~~~~~~~~P~~~~~~~~~~~~~~~lad~l~~~-lN~n~~~~~~--sp~~t~lE~~v~~~la~llG~p~~ 580 (764)
+||.++...-......-.+-..++-...+...+.++.+..... ..+....|.. +....++..++.+++++++|.+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~ 82 (398)
T cd00613 3 EVLRHLKRLASKNKALDQSMSFLGSGTYKHNPPAVIKRNILENEFYTAYTPYQPEISQGRLQALFELQTMLCELTGMDVA 82 (398)
T ss_pred HHHHHHHHHHhcCcCcccCcccccccccCCcCcHHHHHHhccccCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCCcc
Confidence 6777766632122111111133444444445555555544444 1111111211 456678889999999999998642
Q ss_pred ccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCC----CceE
Q psy13453 581 FLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGD----VPVR 656 (764)
Q Consensus 581 ~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lG----l~v~ 656 (764)
..+|+.+|+.+...++.+++... . ++..|++++..|.+...++..+| .+++
T Consensus 83 ---------~v~~~~~g~~~~~~~~~~~~~~~--~--------------~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~ 137 (398)
T cd00613 83 ---------NASLQDEATAAAEAAGLAAIRAY--H--------------KRNKVLVPDSAHPTNPAVARTRGEPLGIEVV 137 (398)
T ss_pred ---------ceeccCchHHHHHHHHHHHHhcc--c--------------CCCEEEEcCccCcchHHHHHHhcccCCcEEE
Confidence 35567756655455555444221 0 12257889999999999988877 8899
Q ss_pred EEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccH-HHHHHHHHhcCCEEEEeccccccccccchhhh
Q psy13453 657 QLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNL-EELGPICQEYNIWLHVDAAYAGSALLLPEYAH 735 (764)
Q Consensus 657 ~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl-~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~ 735 (764)
.+|+++++.+|+++|+++|.++ +.+|+++..+ .+|.++|+ ++|+++|++||+|+|||++++++..+.....
T Consensus 138 ~v~~~~~~~~d~~~l~~~i~~~------t~~viv~~~~-~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~~~- 209 (398)
T cd00613 138 EVPSDEGGTVDLEALKEEVSEE------VAALMVQYPN-TLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKPPGE- 209 (398)
T ss_pred EeccCCCCCcCHHHHHHhcCCC------eEEEEEECCC-CCceecchHHHHHHHHHhcCCEEEEEeccccccCCCChHH-
Confidence 9999888899999999988543 4477777776 57999885 9999999999999999999876544332211
Q ss_pred hhcCCCcccEEEEcCCccCCCCcCce
Q psy13453 736 LKRGLEYVDSFDFNTHKWLLVNFDCS 761 (764)
Q Consensus 736 ~l~gie~aDSit~d~HK~l~~P~~~g 761 (764)
..+|+++.++|||+ .|+++|
T Consensus 210 -----~~~d~~~~s~~K~~-~p~g~G 229 (398)
T cd00613 210 -----YGADIVVGNLQKTG-VPHGGG 229 (398)
T ss_pred -----cCCCEEEeeccccC-CCCCCC
Confidence 14699999999999 887654
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.2e-15 Score=175.65 Aligned_cols=233 Identities=9% Similarity=-0.031 Sum_probs=172.8
Q ss_pred ccccCCcceeeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccC-chhh
Q psy13453 11 AYPSETLSLLIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQS-LNAP 88 (764)
Q Consensus 11 ~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDp-i~~i 88 (764)
.++|++ .|.+..++|+..|+.. +.||+|++|++|+++|+++|++. |..+.+ +.|.|+| +|.++| |.+|
T Consensus 581 vlip~s---aHgtnPasa~~~G~~V---v~V~~d~~G~iDle~L~~~i~~~---~~~taaV~iT~pst-~G~~e~~I~eI 650 (939)
T TIGR00461 581 CLIPVS---AHGTNPASAAMAGMQV---VPVNCDQDGNIDLVDLKNKAEQH---GDELAAVMVTYPST-HGVFEPTIQHA 650 (939)
T ss_pred EEEEcc---ccCcCHHHHHHCCCEE---EEeccCCCCCcCHHHHHHHHhhc---CCceEEEEEEeCCc-CceecccHHHH
Confidence 778888 8999999999999976 99999999999999999999862 224556 6999999 799988 9998
Q ss_pred hc-----CCCceecccc---------------------ccc-----------cceeeeecCCCccccccccc-----ccc
Q psy13453 89 VS-----NGPLKVGGVL---------------------RRV-----------YSSCLVPRGQKSLRTTVLFH-----FLF 126 (764)
Q Consensus 89 a~-----~~wlHVDa~l---------------------~~~-----------y~s~ll~rd~~~l~~~~s~~-----~d~ 126 (764)
++ +.|+||||+- .|+ +.+++.+|+. +...+... .|.
T Consensus 651 ~~iah~~G~~v~VDgAq~~al~~l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~--L~~~lPg~~v~~t~d~ 728 (939)
T TIGR00461 651 CDIVHSFGGQVYLDGANMNAQVGLTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSH--LIPFLPKHDVVSMITG 728 (939)
T ss_pred HHHHHHcCCEEEEEecChhhCCCCCCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhh--chhhcCCCcccccccC
Confidence 86 6899999941 111 1145666642 11111100 111
Q ss_pred --C--CcccCCCCcccH----HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC----CceeEEEEee
Q psy13453 127 --Q--HWQIPLGRRFRA----LKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPP----SMGLVCFRLK 194 (764)
Q Consensus 127 --~--d~tle~SRr~~A----LklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P----~l~iV~Fry~ 194 (764)
. +.+...++.+++ ++.|+.|+.+|.+|+++..+.++.+|+|++++|++ +++++.+. -..-++|++.
T Consensus 729 ~greq~Iga~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~--~~~~l~~~~~~~~~hEfv~~~~ 806 (939)
T TIGR00461 729 IGGSKSIGSVSAAPYGSASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKD--HYPILFVGTLKHVAHECILDLR 806 (939)
T ss_pred CCCccccccccccccCcHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc--cCcccccCCCCceeEEEEEecc
Confidence 0 112223344444 79999999999999999999999999999999997 66877763 3455888886
Q ss_pred ccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEec-eeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHc
Q psy13453 195 VRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKG-SFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLR 272 (764)
Q Consensus 195 P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t-~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~ 272 (764)
|.. ++.+..+..+.++|.+.|....+.+ .+.+...+++|- .+++++||+|++.+.++++++.+
T Consensus 807 ~~~------------~~~g~~~~dIakrL~d~G~hapt~~~pv~g~lmiepTE---~eskeelD~f~~al~~I~~e~~~ 870 (939)
T TIGR00461 807 PLK------------AKTGIEAIDVAKRLQDYGFHAPTLSFPVPGTLMVEPTE---SESLEELDRFCDAMIAIKEEINA 870 (939)
T ss_pred chh------------hhcCCCHHHHHHHHHhCCeeccccCCccCCeEEEEeec---cCCHHHHHHHHHHHHHHHHHHHH
Confidence 521 1334457889999999999766544 455666777654 77899999999999999988866
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-14 Score=161.21 Aligned_cols=165 Identities=13% Similarity=0.117 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchh
Q psy13453 564 EVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSS 643 (764)
Q Consensus 564 E~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~S 643 (764)
-+++.+.+++++|.+ ..++|+|+|+++..++.+.. . +...|+++..+|++
T Consensus 46 ~~~l~~~la~~~g~~-----------~i~~~~g~t~al~~~l~~~~----~---------------~gd~Vl~~~~~~~~ 95 (361)
T cd06452 46 IKDFHHDLAEFLGMD-----------EARVTPGAREGKFAVMHSLC----E---------------KGDWVVVDGLAHYT 95 (361)
T ss_pred HHHHHHHHHHHcCCc-----------eEEEeCCHHHHHHHHHHHhc----C---------------CCCEEEEcCCcchH
Confidence 344556788888872 36899999999887776431 1 12257788999999
Q ss_pred HHHHHHhCCCceEEEecCCCC--cccHHHHHHHHHHhhhc-CCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEe
Q psy13453 644 VEKSAIIGDVPVRQLRSDDNG--VLRGDALLTAVKEDLAK-GLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVD 720 (764)
Q Consensus 644 v~kAa~~lGl~v~~Vp~d~~g--~md~~~Le~~I~~~~~~-G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVD 720 (764)
...+++..|++++.||++.++ .+|+++|++++++..++ +..+-+|+++..++.+|.++|+++|+++|+++|+++|||
T Consensus 96 ~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD 175 (361)
T cd06452 96 SYVAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLN 175 (361)
T ss_pred HHHHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHHHHHHcCCeEEEE
Confidence 999999999999999998654 99999999999754322 234668888999999999999999999999999999999
Q ss_pred ccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 721 AAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 721 aA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
+||+.+....+-. .. .+|.++.++||+++.|.++|+++
T Consensus 176 ~a~~~g~~~~~~~-----~~-~~d~~~~s~~K~l~~~~~~G~l~ 213 (361)
T cd06452 176 GAYTVGRMPVSGK-----EL-GADFIVGSGHKSMAASAPIGVLA 213 (361)
T ss_pred CCcccCCcCCCHH-----Hc-CCCEEEecCCccccCCCCeEEEE
Confidence 9998654322211 11 35999999999999998888764
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-14 Score=162.98 Aligned_cols=205 Identities=12% Similarity=0.012 Sum_probs=147.7
Q ss_pred CccccccCCCCChHHHHHHHHHHhhc---cc--CccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCCh
Q psy13453 523 PQFNAYFPTGSSYPSIVGDMLSGAFG---LI--GFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTA 597 (764)
Q Consensus 523 P~~~~~~~~~~~~~~~lad~l~~~lN---~n--~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGg 597 (764)
..||++-.+++.+..++ +.+..++. .+ ...+..+.....+..++++.+++++|.++. ...+||+|+
T Consensus 33 ~iyLd~a~~~~~p~~v~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~--------~~v~~t~g~ 103 (424)
T PLN02855 33 LVYLDNAATSQKPAAVL-DALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTS--------REIVFTRNA 103 (424)
T ss_pred eEEeeCccccCCCHHHH-HHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCC--------CEEEEeCCH
Confidence 57899977766555544 33444332 12 122223444556667889999999998531 358999999
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhH----HHHHHhCCCceEEEecCCCCcccHHHHHH
Q psy13453 598 SEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV----EKSAIIGDVPVRQLRSDDNGVLRGDALLT 673 (764)
Q Consensus 598 TeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv----~kAa~~lGl~v~~Vp~d~~g~md~~~Le~ 673 (764)
|+++...+........ .++..|+++..+|.|. ...++..|+.++.||++.++.+|+++|++
T Consensus 104 t~al~~i~~~~~~~~~---------------~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~~~~~~~l~~ 168 (424)
T PLN02855 104 TEAINLVAYTWGLANL---------------KPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPDEVLDVEQLKE 168 (424)
T ss_pred HHHHHHHHHHhhhhcC---------------CCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHH
Confidence 9997665542110000 1123588888988874 44456789999999998888899999999
Q ss_pred HHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCcc
Q psy13453 674 AVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKW 753 (764)
Q Consensus 674 ~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~ 753 (764)
.|.+. +-+|+.+..++.+|.+.|+++|+++|+++|++++||+||+.+....+ ++.+ .+|.++.++||+
T Consensus 169 ~i~~~------t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~~~~-----~~~~-~~d~~~~s~~K~ 236 (424)
T PLN02855 169 LLSEK------TKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMPVD-----VQTL-GADFLVASSHKM 236 (424)
T ss_pred HhccC------ceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCcCCC-----chhc-CCCEEEeecccc
Confidence 99653 44888999999999999999999999999999999999976544322 2222 369999999995
Q ss_pred CCCCcCceeeC
Q psy13453 754 LLVNFDCSAMW 764 (764)
Q Consensus 754 l~~P~~~g~l~ 764 (764)
+.|.|+|++|
T Consensus 237 -~gp~G~G~l~ 246 (424)
T PLN02855 237 -CGPTGIGFLW 246 (424)
T ss_pred -cCCCccEEEE
Confidence 5699999885
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.3e-15 Score=179.62 Aligned_cols=168 Identities=17% Similarity=0.134 Sum_probs=135.8
Q ss_pred hHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChH----HHHHHHHHHHHHHHhhhhccCCCCCccccccCceEE
Q psy13453 559 ACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTAS----EATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVA 634 (764)
Q Consensus 559 ~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgT----eANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi 634 (764)
...++-.++.+|+++++|++ ..+||+++| +++++++...... + + ...+-+|
T Consensus 565 g~~~~~~~~r~~la~i~g~~-----------~v~f~pnaga~ge~a~~~vi~~~~~~---~-G----------d~~r~~v 619 (993)
T PLN02414 565 GYQEMFEDLGDLLCEITGFD-----------SFSLQPNAGAAGEYAGLMVIRAYHLS---R-G----------DHHRNVC 619 (993)
T ss_pred HHHHHHHHHHHHHHHHhCCC-----------eEEEcCCCcHHHHHHHHHHHHHHHhc---c-C----------CCCCCEE
Confidence 34567788999999999994 368999998 7887777655211 0 1 1124478
Q ss_pred EecCCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcC
Q psy13453 635 YTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYN 714 (764)
Q Consensus 635 ~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~g 714 (764)
++|..+|.|+.+++...|++++.||+|++|.+|+++|+++|++.++ .+.+|++|.+||..|..+||++|+++|+++|
T Consensus 620 li~~~aH~sn~a~a~~~G~~vv~v~~d~~G~vDle~L~~~i~~~~~---~ta~V~vt~pSn~gg~e~~I~eI~~iah~~G 696 (993)
T PLN02414 620 IIPVSAHGTNPASAAMCGMKIVVVGTDAKGNINIEELRKAAEAHKD---NLAALMVTYPSTHGVYEEGIDEICDIIHDNG 696 (993)
T ss_pred EeCCCcCccCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHHhccCC---CeEEEEEECCCccccccchHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999975321 2569999999999999999999999999999
Q ss_pred CEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcC
Q psy13453 715 IWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD 759 (764)
Q Consensus 715 lwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~ 759 (764)
..++||||+..+...... .+--.||.+.++.|||++.|.|
T Consensus 697 alv~vDgAq~~a~~~l~~-----p~~~GaD~~~~s~HK~f~~P~G 736 (993)
T PLN02414 697 GQVYMDGANMNAQVGLTS-----PGFIGADVCHLNLHKTFCIPHG 736 (993)
T ss_pred CEEEEEecCHHhccCcCC-----ccccCCCEEEecCCccCCcCcc
Confidence 999999999765522211 0112469999999999999997
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=156.94 Aligned_cols=166 Identities=16% Similarity=0.035 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcch
Q psy13453 563 LEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNS 642 (764)
Q Consensus 563 lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~ 642 (764)
+-.++.+.+++++|.+.. -++|+|+|++|..++.+... +...|+++..+|.
T Consensus 60 ~i~~~~~~~A~~~ga~~~----------~~~~~Gst~a~~~~l~al~~-------------------~gd~Vlv~~~~h~ 110 (294)
T cd00615 60 PIKEAQELAARAFGAKHT----------FFLVNGTSSSNKAVILAVCG-------------------PGDKILIDRNCHK 110 (294)
T ss_pred HHHHHHHHHHHHhCCCCE----------EEEcCcHHHHHHHHHHHcCC-------------------CCCEEEEeCCchH
Confidence 445666788889987542 34589999999887764311 1235888999999
Q ss_pred hHHHHHHhCCCceEEEecCCC------CcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCE
Q psy13453 643 SVEKSAIIGDVPVRQLRSDDN------GVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIW 716 (764)
Q Consensus 643 Sv~kAa~~lGl~v~~Vp~d~~------g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glw 716 (764)
|+..++...|..++.++++.+ +.+|+++|++++++.. .+-+|+.|.. |.+|.+.|+++|+++|+++|++
T Consensus 111 s~~~~~~~~g~~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~~----~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~g~~ 185 (294)
T cd00615 111 SVINGLVLSGAVPVYLKPERNPYYGIAGGIPPETFKKALIEHP----DAKAAVITNP-TYYGICYNLRKIVEEAHHRGLP 185 (294)
T ss_pred HHHHHHHHCCCEEEEecCccCcccCcCCCCCHHHHHHHHHhCC----CceEEEEECC-CCCCEecCHHHHHHHHHhcCCe
Confidence 999999999999888887532 4799999999997632 2557777776 5799999999999999999999
Q ss_pred EEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 717 LHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 717 LHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
++||+||++.+.+.+........ ..+|.++.++||+++.|.++|++
T Consensus 186 livDeA~~~~~~~~~~~~~~~~~-~~~div~~S~hK~l~g~~~~~~l 231 (294)
T cd00615 186 VLVDEAHGAHFRFHPILPSSAAM-AGADIVVQSTHKTLPALTQGSMI 231 (294)
T ss_pred EEEECcchhhhccCcccCcchhh-cCCcEEEEchhcccchHhHHHHH
Confidence 99999999876555443322211 25799999999999888777654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.1e-14 Score=170.22 Aligned_cols=237 Identities=13% Similarity=0.067 Sum_probs=167.5
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCCCCCccccccCC-CCChHHHHHHHHHHhhcccCccc-cCCchHHHHHHHHHHHHHHHc
Q psy13453 498 EGEDWRHIMRDMNTVIMPGITHWQSPQFNAYFPT-GSSYPSIVGDMLSGAFGLIGFSW-LSSPACTELEVLVMNWLGKAL 575 (764)
Q Consensus 498 ~g~~~~~il~~l~~~i~~~~~~~~~P~~~~~~~~-~~~~~~~lad~l~~~lN~n~~~~-~~sp~~t~lE~~v~~~la~ll 575 (764)
.+.+--+++..+++.-..+..-..+..|+|--+- -..+...+-.....+++...+.. +.+...-++-.+.-+|+++++
T Consensus 477 ~~~SE~el~r~~~~La~kn~~~~~~~~~LGsCTmK~n~~~~~~p~s~~eF~t~hPyqp~e~sQG~lq~i~elq~~l~eLt 556 (954)
T PRK12566 477 AHHSETEMLRYLKQLENKDLALNQSMIPLGSCTMKLNATSEMIPITWPEFAQLHPFAPREQAEGYRAMIDELEAWLCAIT 556 (954)
T ss_pred cCCCHHHHHHHHHHHHhcCcCcccCcccCcccccCcCcHHhhhcccchhhhcCCCCCchhhhcCHHHHHHHHHHHHHHHH
Confidence 4678889999998876555432333344443100 01111111112222333333333 456677777777889999999
Q ss_pred CCCccccCCCCCCCcEEEeC-ChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCc
Q psy13453 576 GLPEEFLNCSPGPGGGIIQS-TASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVP 654 (764)
Q Consensus 576 G~p~~~~~~~~~~~~GvfTs-GgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~ 654 (764)
|++. ..+.+ +|+++++.++++.|.....+ + ...+-+|++|..+|.+...++...|++
T Consensus 557 Gmd~-----------~Sl~p~sGA~gE~A~Lmair~yh~~~-G----------e~~r~~vLIp~saHgtNpasa~~~Gie 614 (954)
T PRK12566 557 GFDA-----------ICMQPNSGAQGEYAGLLAIRRYHRSR-G----------QSQRDICLIPSSAHGTNPASAQMAGMR 614 (954)
T ss_pred CCCe-----------EeecCCchHHHHHHHHHHHHHHHHhc-C----------CCCCCEEEecccccccCHHHHHHCCCE
Confidence 9975 24555 78899999988877644322 1 112446889999998888888889999
Q ss_pred eEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhh
Q psy13453 655 VRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYA 734 (764)
Q Consensus 655 v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r 734 (764)
++.||+|++|.+|+++|+++|++.. ....+|+.|.+++..+..+|+++|+++|+++|.+++||||+..+......-
T Consensus 615 Vv~Vp~D~~G~iDle~L~a~I~~~~---~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~l~~P- 690 (954)
T PRK12566 615 VVIVECDPDGNVDLDDLKAKAAAAG---DRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGLARP- 690 (954)
T ss_pred EEEeccCCCCCcCHHHHHHHhhccC---CCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhccCCCCh-
Confidence 9999999999999999999997422 236688999999988777889999999999999999999987544333211
Q ss_pred hhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 735 HLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 735 ~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
|--.||.++.++|||++.|.+.|..|
T Consensus 691 ----g~~GADi~~~s~HKtf~~P~G~GGP~ 716 (954)
T PRK12566 691 ----ADIGADVSHMNLHKTFCIPHGGGGPG 716 (954)
T ss_pred ----hhcCCCEEEecCCcccCcCccCCCCc
Confidence 11257999999999999999999754
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.6e-14 Score=156.04 Aligned_cols=218 Identities=13% Similarity=0.156 Sum_probs=159.6
Q ss_pred ccccCCcceeeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc
Q psy13453 11 AYPSETLSLLIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS 90 (764)
Q Consensus 11 ~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~ 90 (764)
...++. .|||+.++++.+|+.. +.||+++++++|+++|+++|+++ +..+|.+.|++++|.++|++++++
T Consensus 109 vl~~~~---~h~~~~~~~~~~G~~~---~~v~~~~~~~~d~~~l~~~l~~~-----~~~vv~~~~~~~tG~~~~~~~i~~ 177 (373)
T TIGR03812 109 IIVPES---AHFSFEKAAEMLGLEL---RYAPLDEDYTVDVKDVEDLIDDN-----TIGIVGIAGTTELGQIDDIEELSK 177 (373)
T ss_pred EEECCc---chHHHHHHHHHcCCeE---EEEeeCCCCCcCHHHHHHHHhhC-----cEEEEEECCCCCCCccCCHHHHHH
Confidence 555665 7999999999999976 99999999999999999999764 234466678999999999999887
Q ss_pred -----CCCceeccccc------------------------------ccc------ceeeeecCCCcccccccc--ccc--
Q psy13453 91 -----NGPLKVGGVLR------------------------------RVY------SSCLVPRGQKSLRTTVLF--HFL-- 125 (764)
Q Consensus 91 -----~~wlHVDa~l~------------------------------~~y------~s~ll~rd~~~l~~~~s~--~~d-- 125 (764)
++|+|||++.. +++ ++++++++++.+.. +.. .+.
T Consensus 178 l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~~~~-l~~~~~~~~~ 256 (373)
T TIGR03812 178 IALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYLKY-LSVDAPYLTV 256 (373)
T ss_pred HHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCceEEEEeCHHHHhh-hcccCcccCC
Confidence 88999999641 011 01222222211110 000 000
Q ss_pred cCCcccCCCC-cccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeecccccccccc
Q psy13453 126 FQHWQIPLGR-RFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNL 204 (764)
Q Consensus 126 ~~d~tle~SR-r~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~ 204 (764)
...++..|+| ....+.+|++++.++++|+.++.++..++++++++.|++. +++.+.+|..++|+|+..
T Consensus 257 ~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~v~~~~~---------- 325 (373)
T TIGR03812 257 KKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKI-GFEPVIEPVLNIVAFEVD---------- 325 (373)
T ss_pred CCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEcCCCceEEEEEeC----------
Confidence 1122344677 4667789999999999999999999999999999999997 576666788999999753
Q ss_pred ccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHH
Q psy13453 205 FGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRT 265 (764)
Q Consensus 205 ~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~ 265 (764)
+ ...+.++|.++|+.. +.. .++.++|+++. +++++++++.+++.|++
T Consensus 326 ------~----~~~v~~~L~~~gi~v-~~~--~~~~~iRis~~-~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 326 ------D----PEEVRKKLRDRGWYV-SVT--RCPKALRIVVM-PHVTREHIEEFLEDLKE 372 (373)
T ss_pred ------C----HHHHHHHHHHCCcee-ccC--CCCCEEEEEEE-CCCCHHHHHHHHHHHhh
Confidence 1 136888888888653 222 34568999765 56889999999999875
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.57 E-value=3e-14 Score=137.97 Aligned_cols=163 Identities=21% Similarity=0.110 Sum_probs=125.2
Q ss_pred HHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhH
Q psy13453 565 VLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV 644 (764)
Q Consensus 565 ~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv 644 (764)
.++.++++++++.+. ...+|++|||+|+..++.+++.. +..|+++...|.+.
T Consensus 3 ~~~~~~l~~~~~~~~---------~~~~~~~~~t~a~~~~~~~~~~~-------------------~~~v~~~~~~~~~~ 54 (170)
T cd01494 3 EELEEKLARLLQPGN---------DKAVFVPSGTGANEAALLALLGP-------------------GDEVIVDANGHGSR 54 (170)
T ss_pred HHHHHHHHHHcCCCC---------CcEEEeCCcHHHHHHHHHHhCCC-------------------CCEEEEeeccccee
Confidence 356788999996322 35889999999999888876321 12478888899888
Q ss_pred H-HHHHhCCCceEEEecCCCCcccHH--HHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEec
Q psy13453 645 E-KSAIIGDVPVRQLRSDDNGVLRGD--ALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 721 (764)
Q Consensus 645 ~-kAa~~lGl~v~~Vp~d~~g~md~~--~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDa 721 (764)
. ..+...|.+++.++.+.++..+.+ .+++. ..+..|.+|+.+..++.+|..+|+++|+++|+++|+|+|+|+
T Consensus 55 ~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~ 129 (170)
T cd01494 55 YWVAAELAGAKPVPVPVDDAGYGGLDVAILEEL-----KAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDA 129 (170)
T ss_pred hhhHHHhcCCEEEEeccCCCCccchhhhhhhhc-----cccCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEec
Confidence 8 888889999999998766544433 33322 224468899999999999999999999999999999999999
Q ss_pred cccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 722 AYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 722 A~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
||+++....+..... ...+|.++.++|||++. .++|+++
T Consensus 130 a~~~~~~~~~~~~~~---~~~~d~~~~s~~K~~~~-~~~G~l~ 168 (170)
T cd01494 130 ASAGGASPAPGVLIP---EGGADVVTFSLHKNLGG-EGGGVVI 168 (170)
T ss_pred ccccccccccccccc---cccCCEEEEEcccccCC-CceEEEE
Confidence 999877655331111 23579999999999998 7888874
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.2e-14 Score=157.12 Aligned_cols=205 Identities=12% Similarity=0.051 Sum_probs=140.5
Q ss_pred CCCccccccCCCCChHHHHHHHHHHhh----cccCccccCC-chHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeC
Q psy13453 521 QSPQFNAYFPTGSSYPSIVGDMLSGAF----GLIGFSWLSS-PACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQS 595 (764)
Q Consensus 521 ~~P~~~~~~~~~~~~~~~lad~l~~~l----N~n~~~~~~s-p~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTs 595 (764)
.+..||++-..++. +..+.+.+..++ +.....+..+ .....++.+. +.+ +++|.++ ...+||+
T Consensus 26 ~~~iyld~~a~g~~-p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~g~~~---------~~v~~~~ 93 (406)
T TIGR01814 26 NAVIYLDGNSLGLM-PKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESL-LKL-RLVGAKE---------DEVVVMN 93 (406)
T ss_pred CCcEEecCCCcCcC-cHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhh-ccc-cccCCCC---------CcEEEeC
Confidence 34578887766655 444444444333 2222233222 2223334333 334 7888865 3579999
Q ss_pred ChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHH----HHHhCCCce----EEEecCCCCccc
Q psy13453 596 TASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEK----SAIIGDVPV----RQLRSDDNGVLR 667 (764)
Q Consensus 596 GgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~k----Aa~~lGl~v----~~Vp~d~~g~md 667 (764)
|+|+++..++... ..+. .++.+|+++..+|.|+.. .++..|+.+ +.++.+.+|.+|
T Consensus 94 ~~t~~l~~~~~~~---~~~~-------------~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 157 (406)
T TIGR01814 94 TLTINLHLLLASF---YKPT-------------PKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPREEETLR 157 (406)
T ss_pred CchHHHHHHHHHh---cCCc-------------CCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccCCCCccC
Confidence 9999877665432 1010 012367889999988544 345668876 567777788999
Q ss_pred HHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEE
Q psy13453 668 GDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFD 747 (764)
Q Consensus 668 ~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit 747 (764)
++++++.++.. +..+.+|+.+..++.+|.+.|+++|+++|+++|++++||++++.+.+..+- +.+ .+|.++
T Consensus 158 ~~~l~~~~~~~---~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id~-----~~~-gvD~~~ 228 (406)
T TIGR01814 158 LEDILDTIEKN---GDDIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLDL-----HDW-GVDFAC 228 (406)
T ss_pred HHHHHHHHHhc---CCCeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCccccc-----ccC-CCCEEE
Confidence 99999998643 224568999999999999999999999999999999999999998775531 111 359999
Q ss_pred EcCCccCCCCcCceee
Q psy13453 748 FNTHKWLLVNFDCSAM 763 (764)
Q Consensus 748 ~d~HK~l~~P~~~g~l 763 (764)
+++||||+.|.| |.+
T Consensus 229 ~s~hK~l~g~pG-~~l 243 (406)
T TIGR01814 229 WCTYKYLNAGPG-AGA 243 (406)
T ss_pred EcCccccCCCCC-eEE
Confidence 999999987778 444
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.3e-14 Score=154.33 Aligned_cols=172 Identities=11% Similarity=-0.002 Sum_probs=133.5
Q ss_pred chHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEec
Q psy13453 558 PACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTS 637 (764)
Q Consensus 558 p~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S 637 (764)
+....+-+++.+.+++++|.++++ ...+||+|||+++..++..... + ++-+++++
T Consensus 31 ~~~~~~~~~~r~~la~l~~~~~~~-------~~i~~t~~~t~al~~~~~~l~~---~---------------~~~vlv~~ 85 (363)
T TIGR02326 31 SDYNIVVEQIRQQLLALATAEEGY-------TSVLLQGSGTFAVEAVIGSAVP---K---------------DGKLLVVI 85 (363)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCc-------eEEEEcCCCHHHHHHHHHhcCC---C---------------CCeEEEEe
Confidence 456667778999999999997521 2478999999998777653310 0 12356666
Q ss_pred CCcchh-HHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCE
Q psy13453 638 DQSNSS-VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIW 716 (764)
Q Consensus 638 ~~aH~S-v~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glw 716 (764)
...|.+ +.+.++..|++++.||+++++.+|+++|+++++++.+ +-+|+.+..+|.+|.+.|+++|+++|++||++
T Consensus 86 ~~~~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~----~~~v~~~~~~~~tG~~~~i~~I~~l~~~~g~~ 161 (363)
T TIGR02326 86 NGAYGARIVQIAEYLGIPHHVVDTGEVEPPDVVEVEAILAADPA----ITHIALVHCETTTGILNPIEAVAKLAHRHGKV 161 (363)
T ss_pred CChhhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCC----ccEEEEEeecCCccccCcHHHHHHHHHHcCCE
Confidence 666666 4677888999999999998899999999999876421 23677788899999999999999999999999
Q ss_pred EEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 717 LHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 717 LHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
++||++++.+....+ ++.+ .+|.+..++|||++.|.|.|++|
T Consensus 162 livD~~~~~g~~~~~-----~~~~-~~D~~~~s~~K~l~~p~G~G~l~ 203 (363)
T TIGR02326 162 TIVDAMSSFGGIPID-----IAEL-HIDYLISSANKCIQGVPGFGFVI 203 (363)
T ss_pred EEEEccccccCcccc-----hhhc-CccEEEecCccccccCCcceEEE
Confidence 999999876544332 2222 36999999999999999999875
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-13 Score=155.37 Aligned_cols=197 Identities=15% Similarity=0.028 Sum_probs=145.8
Q ss_pred ccCCCCChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHH
Q psy13453 528 YFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILV 607 (764)
Q Consensus 528 ~~~~~~~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~a 607 (764)
+.+++...+.-+-+.+...... ..++.+.++-+++.+++++++|.+.+ ...+++++||.++..++..
T Consensus 13 ~~pGP~~~~~~V~~a~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~g~~~~--------~~vi~~~~gt~a~~~a~~~ 79 (401)
T PLN02409 13 FVPGPVNIPERVLRAMNRPNED-----HRSPAFPALTKELLEDVKYIFKTKSG--------TPFIFPTTGTGAWESALTN 79 (401)
T ss_pred ccCCCCCCCHHHHHHhcCCCCC-----CCCHHHHHHHHHHHHHHHHHhCCCCC--------CEEEEeCCcHHHHHHHHHh
Confidence 4455555544444444433322 23778888999999999999998653 2568999999887666542
Q ss_pred HHHHHhhhhccCCCCCccccccCceEEEecCCcchhH--HHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCc
Q psy13453 608 AKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV--EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIP 685 (764)
Q Consensus 608 AR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv--~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p 685 (764)
. .. ++-.|++++..|++. ...++..|++++.|+.+.++.+|+++|+++++++.. ..+
T Consensus 80 ~----~~---------------~Gd~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~--~~~ 138 (401)
T PLN02409 80 T----LS---------------PGDKVVSFRIGQFSLLWIDQMQRLNFDVDVVESPWGQGADLDILKSKLRQDTN--HKI 138 (401)
T ss_pred c----CC---------------CCCEEEEeCCCchhHHHHHHHHHcCCceEEEECCCCCCCCHHHHHHHHhhCcC--CCc
Confidence 1 11 122466777888765 466778899999999987667999999999986421 135
Q ss_pred eEEEEeeccCCccccccHHHHHHH--HHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 686 CCLIATLGTTGTCAFDNLEELGPI--CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 686 ~~VvataGTT~~GaiDpl~eIa~i--~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
-+|+.+..+|.+|.+-|+++|+++ |+++|++++||++++.+....+ ++.+ .+|.++.+.|||++.|.|+|++
T Consensus 139 k~v~~~~~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~id-----~~~~-~~D~~~~s~~K~l~~P~G~G~l 212 (401)
T PLN02409 139 KAVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGALDFR-----MDEW-GVDVALTGSQKALSLPTGLGIV 212 (401)
T ss_pred cEEEEEeecccccccCCHHHHHHHHhhhccCcEEEEEcccccCCcccc-----cccc-CccEEEEcCccccCcCCCccee
Confidence 588889999999999999999999 9999999999999986544332 1111 3599999999999999999988
Q ss_pred C
Q psy13453 764 W 764 (764)
Q Consensus 764 ~ 764 (764)
|
T Consensus 213 ~ 213 (401)
T PLN02409 213 C 213 (401)
T ss_pred E
Confidence 5
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-13 Score=168.45 Aligned_cols=210 Identities=10% Similarity=-0.113 Sum_probs=147.3
Q ss_pred CccccccCCCCChHHHHHHHHHHhh-----cccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCCh
Q psy13453 523 PQFNAYFPTGSSYPSIVGDMLSGAF-----GLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTA 597 (764)
Q Consensus 523 P~~~~~~~~~~~~~~~lad~l~~~l-----N~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGg 597 (764)
-.||+|-.+++..+..+.+.+..++ |.+ ..+..+..++.+-+++.+.+++++|.++. ....+||+|+
T Consensus 35 ~iYLD~Aatt~~~~~~V~~~~~~~~~~~~~np~-s~~~~s~~~~~~~e~aR~~ia~~lga~~~-------~~~VvFtsna 106 (805)
T PLN02724 35 VVYLDHAGATLYSESQLEAALADFSSNVYGNPH-SQSDSSMRSSDTIESARQQVLEYFNAPPS-------DYACVFTSGA 106 (805)
T ss_pred CEeEeCCCCCCCCHHHHHHHHHHHHhhccCCCC-cCcchhhhHHHHHHHHHHHHHHHhCCCcc-------ceEEEEeCCh
Confidence 4699998777655555555544332 333 34455677788888999999999998653 1246999999
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHH---HhCCCceEEEecC--------CCCcc
Q psy13453 598 SEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSA---IIGDVPVRQLRSD--------DNGVL 666 (764)
Q Consensus 598 TeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa---~~lGl~v~~Vp~d--------~~g~m 666 (764)
|+|+.+..... +. .++-.|+++...|.|+.-.. ...|+.++.||++ +.+.+
T Consensus 107 T~alnlva~~l-----~~-------------~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~ 168 (805)
T PLN02724 107 TAALKLVGETF-----PW-------------SSESHFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSV 168 (805)
T ss_pred HHHHHHHHHHC-----CC-------------CCCCeEEEeeccccchHHHHHHHHHcCCeEEeccchhcccccccccccc
Confidence 99966543321 10 01225777999998876433 3358899999887 45666
Q ss_pred cH--HHHHHHHHH----hhhcCCCceEEEEeeccCCccccccHHHHHHHHHhc-------C-CEEEEeccccccccccch
Q psy13453 667 RG--DALLTAVKE----DLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEY-------N-IWLHVDAAYAGSALLLPE 732 (764)
Q Consensus 667 d~--~~Le~~I~~----~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~-------g-lwLHVDaA~Gg~~l~~~~ 732 (764)
++ ++|++.+.+ ....+..+-+|+.++.++.+|.+.||++|..+++.. | +++|||||++.+....+-
T Consensus 169 ~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~piDv 248 (805)
T PLN02724 169 VVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTSPPDL 248 (805)
T ss_pred ccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCCCCCh
Confidence 55 667776531 111123446999999999999999999886666542 3 569999999998776542
Q ss_pred hhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 733 YAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 733 ~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
..+ .+|.+++++|||++.|.|+|+||
T Consensus 249 -----~~~-~~Dfl~~S~HK~~GgP~G~G~L~ 274 (805)
T PLN02724 249 -----SRY-PADFVVVSFYKIFGYPTGLGALL 274 (805)
T ss_pred -----hhc-CCCEEEEecceeccCCCCceEEE
Confidence 222 46999999999999999999986
|
|
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-13 Score=153.48 Aligned_cols=201 Identities=13% Similarity=0.087 Sum_probs=143.4
Q ss_pred ccccccCCCCChHHHHHHHHHHhhcc---c-CccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHH
Q psy13453 524 QFNAYFPTGSSYPSIVGDMLSGAFGL---I-GFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASE 599 (764)
Q Consensus 524 ~~~~~~~~~~~~~~~lad~l~~~lN~---n-~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTe 599 (764)
.||++-.+++.+..++..+. ..+.. + ...|..+.....+..++.+.+++++|.++. ..++++|+|+
T Consensus 19 ~yl~~~~~~~~p~~v~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~~~---------~v~~~~~~t~ 88 (397)
T TIGR01976 19 VFFDNPAGTQIPQSVADAVS-AALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPP---------EVVFGANATS 88 (397)
T ss_pred EEecCCccCCCCHHHHHHHH-HHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCC---------eEEEeCCHHH
Confidence 78888776666655543333 33221 1 122333444556778899999999998652 4789999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHH----HHHHhCCCceEEEecCC-CCcccHHHHHHH
Q psy13453 600 ATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVE----KSAIIGDVPVRQLRSDD-NGVLRGDALLTA 674 (764)
Q Consensus 600 ANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~----kAa~~lGl~v~~Vp~d~-~g~md~~~Le~~ 674 (764)
++...+.+..... .++..|++++.+|+|.. +.++..|++++.++.++ ++.+|+++|+++
T Consensus 89 ~l~~~~~~~~~~~----------------~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~ 152 (397)
T TIGR01976 89 LTFLLSRAISRRW----------------GPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASL 152 (397)
T ss_pred HHHHHHHHHHhcC----------------CCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEeccccCCCcCHHHHHHh
Confidence 8655444332111 11235778889998864 45677899999999985 789999999999
Q ss_pred HHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccC
Q psy13453 675 VKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWL 754 (764)
Q Consensus 675 I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l 754 (764)
|.+. +-+|+.+..++.+|.+.|+++|+++|++||++++||+|+..+....+ +... .+|.++.++|||+
T Consensus 153 i~~~------~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~-----~~~~-~~d~~~~s~~K~~ 220 (397)
T TIGR01976 153 LSPR------TRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPHGLID-----VQAT-GADFLTCSAYKFF 220 (397)
T ss_pred cCCC------ceEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehhhhccccCCC-----HHHc-CCCEEEEechhhc
Confidence 8643 44888999999999999999999999999999999999875433221 1111 4699999999998
Q ss_pred CCCcCceeeC
Q psy13453 755 LVNFDCSAMW 764 (764)
Q Consensus 755 ~~P~~~g~l~ 764 (764)
+.+ +|+++
T Consensus 221 g~~--~G~l~ 228 (397)
T TIGR01976 221 GPH--MGILW 228 (397)
T ss_pred CCc--eEEEE
Confidence 743 67654
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.1e-14 Score=159.52 Aligned_cols=168 Identities=17% Similarity=0.120 Sum_probs=123.4
Q ss_pred CchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEe---CChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceE
Q psy13453 557 SPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQ---STASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633 (764)
Q Consensus 557 sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfT---sGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~v 633 (764)
......+|+.+.+.++++||.+++ .-+|+ ++||++|+.++.+.. . ++..
T Consensus 75 ~~~~~~iE~~ar~~~a~lf~a~~~---------~~~~~~~~~sgt~an~~v~~al~----~---------------~gd~ 126 (452)
T PTZ00094 75 NEVVDKIENLCQKRALEAFGLDPE---------EWGVNVQPYSGSPANFAVYTALL----Q---------------PHDR 126 (452)
T ss_pred chHHHHHHHHHHHHHHHHhCCCcc---------cceeecCCCchHHHHHHHHHHhc----C---------------CCCE
Confidence 345577888899999999998653 22355 799999998776541 1 1235
Q ss_pred EEecCCcchhHHHHHHh----------CCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccH
Q psy13453 634 AYTSDQSNSSVEKSAII----------GDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNL 703 (764)
Q Consensus 634 i~~S~~aH~Sv~kAa~~----------lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl 703 (764)
|++++..|-+....+.. .++.+..+++|.+|.+|+++|++.+++.+ |-+|++ +.+++|.+.|+
T Consensus 127 Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~~~-----~~lvi~--~~s~~g~~~di 199 (452)
T PTZ00094 127 IMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEKGLIDYDKLEELAKAFR-----PKLIIA--GASAYPRDIDY 199 (452)
T ss_pred EEecccccCCcccccccccccccccceeeeeeeecccCCCCCcCHHHHHHHHHHhC-----CCEEEE--eCCCCCCccCH
Confidence 78889999776544321 11344566678789999999999997531 334443 34569999999
Q ss_pred HHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 704 EELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 704 ~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
++|+++|+++|+++|||+||+.+.+...-+.. .+..+|.+++++|||++.|.| |++
T Consensus 200 ~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~---~~~~~D~l~~S~hK~l~GP~G-g~l 255 (452)
T PTZ00094 200 KRFREICDSVGAYLMADIAHTSGLVAAGVLPS---PFPYADVVTTTTHKSLRGPRS-GLI 255 (452)
T ss_pred HHHHHHHHHcCCEEEEeccchhccccCCCCCC---CCCCCcEEEcCCccCCCCCCc-eEE
Confidence 99999999999999999999998876532221 123579999999999999998 544
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.1e-13 Score=164.88 Aligned_cols=235 Identities=10% Similarity=-0.033 Sum_probs=160.9
Q ss_pred ccccCCcceeeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccCchhhh
Q psy13453 11 AYPSETLSLLIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQSLNAPV 89 (764)
Q Consensus 11 ~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDpi~~ia 89 (764)
.+.|++ .|+|+.++++++|+.. +.||+|++|++|+++|+++|+++. ..+.+ +.|.|+|..+..|||.+|+
T Consensus 593 vlis~~---aH~snp~sa~~~G~~v---v~v~~d~~G~iD~~~L~~~i~~~~---~~la~V~it~pst~G~~e~~I~eI~ 663 (954)
T PRK05367 593 CLIPSS---AHGTNPASAVMAGMKV---VVVACDENGNIDLDDLRAKAEEHA---DNLAAIMITYPSTHGVFEETIREIC 663 (954)
T ss_pred EEEEch---hhhhhHHHHHHCCCEE---EEECCCCCCCcCHHHHHHHHhccC---CCeEEEEEEcCCCCeeecCCHHHHH
Confidence 677777 8999999999999976 999999999999999999998631 13555 6999999844569999998
Q ss_pred c-----CCCceeccccc---------------------cc-----c------ceeeeecCCCccccccccc-----cccC
Q psy13453 90 S-----NGPLKVGGVLR---------------------RV-----Y------SSCLVPRGQKSLRTTVLFH-----FLFQ 127 (764)
Q Consensus 90 ~-----~~wlHVDa~l~---------------------~~-----y------~s~ll~rd~~~l~~~~s~~-----~d~~ 127 (764)
+ ++|+||||+.. |+ + ++++.+|+. +...+... .+-.
T Consensus 664 ~i~h~~G~~v~VDgA~~~al~~l~~pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~--l~p~lpg~~v~~~~~~~ 741 (954)
T PRK05367 664 EIVHEHGGQVYLDGANMNAQVGLARPGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAH--LAPFLPGHPVQIAGGET 741 (954)
T ss_pred HHHHHcCCEEEEECcChhhccCCCChhhcCCCEEEecCcccCCCCcCCCCCceEEEeeccc--ccccCCCCccCcCCCCC
Confidence 7 89999999531 11 1 123444421 11100000 0000
Q ss_pred CcccCCCCcc----cHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeC--C--CCceeEEEEeeccccc
Q psy13453 128 HWQIPLGRRF----RALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVC--P--PSMGLVCFRLKVRFWD 199 (764)
Q Consensus 128 d~tle~SRr~----~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~--~--P~l~iV~Fry~P~~~~ 199 (764)
..+..++... .+++.|+.++.+|.+|++++++.++.+|+|++++|++. +++.. + +...-++|++.+-.
T Consensus 742 ~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~--~~~~~~~~~~~~~~e~i~~~~~~~-- 817 (954)
T PRK05367 742 GIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDH--YPVLYTGANGRVAHECILDLRPLK-- 817 (954)
T ss_pred CcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhh--cCccccCCCCCcccceEEEeeccc--
Confidence 1122222222 34568999999999999999999999999999999874 44422 2 33444666664310
Q ss_pred cccccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHc
Q psy13453 200 KLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLR 272 (764)
Q Consensus 200 ~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~ 272 (764)
...+..+..+.++|.+.|....+.. +.....++++++- .++++++|.|++.++.+.+++.+
T Consensus 818 ----------~~~g~~~~di~krL~d~G~~~~t~~-~pv~~~l~i~ptE-~~s~~elDr~~~al~~i~~e~~~ 878 (954)
T PRK05367 818 ----------ESTGITVDDIAKRLIDYGFHAPTMS-FPVAGTLMVEPTE-SESKAELDRFCDAMIAIRAEIDE 878 (954)
T ss_pred ----------ccCCCCHHHHHHHHHHCCCeEeecC-CccCCEEEEEeee-cCCHHHHHHHHHHHHHHHHHHHH
Confidence 0111224679999999998665522 2223457776665 66899999999999999988866
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-13 Score=146.74 Aligned_cols=177 Identities=18% Similarity=0.179 Sum_probs=129.0
Q ss_pred hcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccc
Q psy13453 547 FGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTEN 626 (764)
Q Consensus 547 lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~ 626 (764)
.|.....|..++.+.++|+ .++++||.+. .+|+++||+||.+++.+...+
T Consensus 18 a~~gd~~Yg~D~~~~~l~~----~i~~l~g~e~-----------a~f~~sGT~An~~al~~~~~~--------------- 67 (290)
T PF01212_consen 18 ANVGDDAYGEDPTTARLEE----RIAELFGKEA-----------ALFVPSGTMANQLALRAHLRP--------------- 67 (290)
T ss_dssp TTSB-CCTTSSHHHHHHHH----HHHHHHTSSE-----------EEEESSHHHHHHHHHHHHHHT---------------
T ss_pred cccCCcccCCChhHHHHHH----HHHHHcCCCE-----------EEEeCCCChHHHHHHHHHHhc---------------
Confidence 3443446888888888887 5677888864 579999999999999876521
Q ss_pred cccCceEEEecCCcchhHHHHH---HhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCc-ccc--
Q psy13453 627 DIRNKLVAYTSDQSNSSVEKSA---IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGT-CAF-- 700 (764)
Q Consensus 627 ~~~~~~vi~~S~~aH~Sv~kAa---~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~-Gai-- 700 (764)
.-.|++.+.+|..+.... .+.|.+++.|+.+++|+||+++|++.+.+.......|-+|.++..|... |.+
T Consensus 68 ----~~~vi~~~~aHi~~~E~ga~~~~~G~~~~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s 143 (290)
T PF01212_consen 68 ----GESVICADTAHIHFDETGAIEELSGAKLIPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYS 143 (290)
T ss_dssp ----TEEEEEETTEHHHHSSTTHHHHHTTCEEEEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---
T ss_pred ----CCceeccccceeeeeccchhhHhcCcEEEECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCC
Confidence 225889999999887663 3489999999988779999999999998864422345666666665543 544
Q ss_pred -ccHHHHHHHHHhcCCEEEEecccccccc--ccchhhhhhcCCCcccEEEEcCCccCCCCcCc
Q psy13453 701 -DNLEELGPICQEYNIWLHVDAAYAGSAL--LLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDC 760 (764)
Q Consensus 701 -Dpl~eIa~i~~~~glwLHVDaA~Gg~~l--~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~ 760 (764)
+.|++|.++|++||+++|+|||--+.++ .-...+.... .+|++++++.|.++.|.|.
T Consensus 144 ~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~~---~~D~v~~~~tK~~g~~~Ga 203 (290)
T PF01212_consen 144 LEELRAISELAREHGLPLHMDGARLANAAAALGVSLAEIAA---GADSVSFGGTKNGGAPGGA 203 (290)
T ss_dssp HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHHT---TSSEEEEETTSTT-SSSEE
T ss_pred HHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHHHHhh---hCCEEEEEEEcccccccce
Confidence 6888888999999999999999544333 1223344454 4699999999999999764
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.5e-13 Score=145.88 Aligned_cols=195 Identities=15% Similarity=0.035 Sum_probs=139.1
Q ss_pred cCCCCChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHH
Q psy13453 529 FPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVA 608 (764)
Q Consensus 529 ~~~~~~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aA 608 (764)
.|++......+-+.+...++. .++....+-..+.+.+++++|.++.. ...++++|||+++..++...
T Consensus 4 ~p~p~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~la~~~~~~~~~-------~~i~~~~~gt~~l~~~~~~~ 70 (355)
T TIGR03301 4 TPGPLSTSATVRDAMLVDWCH------WDSEFNDVTDQVRDRLLALAGGDDNH-------TCVLLQGSGTFAVEATIGSL 70 (355)
T ss_pred cCCCCCCCHHHHHHhhhhccC------CCHHHHHHHHHHHHHHHHHhcCCCCC-------cEEEEeCCcHHHHHHHHHhc
Confidence 344444444555555443332 13344577888999999999997631 24668999999987776543
Q ss_pred HHHHhhhhccCCCCCccccccCceEEEecCCcchh-HHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceE
Q psy13453 609 KRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSS-VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCC 687 (764)
Q Consensus 609 R~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~S-v~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~ 687 (764)
. .. ++-+++++...+.+ +..++...|++++.|+.+.++.+|+++|++.+.+.. ...+
T Consensus 71 ~----~~--------------~~~vi~~~~~~~~~~~~~~a~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~----~~~~ 128 (355)
T TIGR03301 71 V----PR--------------DGKLLVLINGAYGERLAKICEYLGIPHTDLNFSEYEPPDLNRIEEALAADP----DITH 128 (355)
T ss_pred c----CC--------------CCeEEEECCCchhhHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHHhCC----CceE
Confidence 2 10 12245555554443 567788899999999998888999999999997532 2457
Q ss_pred EEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 688 LIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 688 VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
|+.+..+|.+|.+.|+++|+++|++||++++||++++.+.... .+... .+|.+..++|||++.|.|+|+++
T Consensus 129 v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~~~s~g~~~~-----~~~~~-~~d~~~~s~~K~l~~~~G~g~~~ 199 (355)
T TIGR03301 129 VATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGAIPI-----DIEEL-DVDALIASANKCLEGVPGFGFVI 199 (355)
T ss_pred EEEEecCCcccchhHHHHHHHHHHHcCCEEEEEeccccCCccc-----chhhc-CccEEEecCCcccccCCceeEEE
Confidence 7778888899999999999999999999999999876543221 11111 35999999999998898988874
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-12 Score=144.99 Aligned_cols=165 Identities=13% Similarity=0.099 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchh
Q psy13453 564 EVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSS 643 (764)
Q Consensus 564 E~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~S 643 (764)
..+..+.+++++|.++ ..+++||+++|..++.+.. . ++..|+++...|+|
T Consensus 53 ~~~~~e~lA~~~g~~~-----------~~i~~g~~~a~~~~~~~l~----~---------------~gd~Vl~~~~~h~s 102 (370)
T TIGR02539 53 IHDFLEDLAEFLGMDE-----------ARVTHGAREGKFAVMHALC----K---------------EGDWVVLDGLAHYT 102 (370)
T ss_pred HHHHHHHHHHHhCCCc-----------eEEECChHHHHHHHHHHhh----C---------------CCCEEEECCcccHH
Confidence 3455667899999865 4678999999877665432 1 12257789999999
Q ss_pred HHHHHHhCCCceEEEecC--CCCcccHHHHHHHHHHhhhc-CCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEe
Q psy13453 644 VEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAK-GLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVD 720 (764)
Q Consensus 644 v~kAa~~lGl~v~~Vp~d--~~g~md~~~Le~~I~~~~~~-G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVD 720 (764)
...+++..|.+++.+|.+ .++.+|+++|+++|++..++ +..+-+|+.+..++.+|.+.|+++|+++|++||++++||
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livD 182 (370)
T TIGR02539 103 SYVAAERAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLN 182 (370)
T ss_pred HHHHHHHcCCEEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEE
Confidence 999999999999999986 35899999999999763322 124567888888899999999999999999999999999
Q ss_pred ccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 721 AAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 721 aA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
+||+.+.+..+- . .. .+|.++.++|||++.+.++|+++
T Consensus 183 ea~~~g~~~~~~-~----~~-~~di~v~s~sK~~~~~g~~G~l~ 220 (370)
T TIGR02539 183 CAYTVGRMPVSA-K----EI-GADFIVGSGHKSMAASGPCGVLG 220 (370)
T ss_pred CccccCCcCCCH-H----Hc-CCCEEEeeCcccccCCCCEEEEE
Confidence 999876322211 1 11 36999999999999777677653
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.1e-13 Score=143.46 Aligned_cols=174 Identities=16% Similarity=0.183 Sum_probs=126.8
Q ss_pred ccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccc
Q psy13453 549 LIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDI 628 (764)
Q Consensus 549 ~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~ 628 (764)
.....|..+|....+|+ ++++++|. . .++|+++||++|.+||.+..+
T Consensus 26 ~~~~~YG~D~~~~~~e~----~~ae~~g~-~----------a~~Fv~sGT~aN~lal~~~~~------------------ 72 (342)
T COG2008 26 VGDDVYGEDPTTNALEQ----RIAELFGK-E----------AALFVPSGTQANQLALAAHCQ------------------ 72 (342)
T ss_pred cCCCCCCCCHHHHHHHH----HHHHHhCC-c----------eEEEecCccHHHHHHHHHhcC------------------
Confidence 34567888888887776 77888887 2 479999999999999986542
Q ss_pred cCceEEEecCCcchhHHHHHH--hCC-CceEEEecCCCCcccHHHHHHHHHHhh-hcCCCceEEEEeeccCCccccc---
Q psy13453 629 RNKLVAYTSDQSNSSVEKSAI--IGD-VPVRQLRSDDNGVLRGDALLTAVKEDL-AKGLIPCCLIATLGTTGTCAFD--- 701 (764)
Q Consensus 629 ~~~~vi~~S~~aH~Sv~kAa~--~lG-l~v~~Vp~d~~g~md~~~Le~~I~~~~-~~G~~p~~VvataGTT~~GaiD--- 701 (764)
|.-.++|.+.+|....++.. .++ +..+.+...++|+|++++++..|..+. -.-.+|.+|..|.-| +.|.+=
T Consensus 73 -~~~~vi~~~~aHi~~~E~Ga~~~~~~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~t-e~GtVy~l~ 150 (342)
T COG2008 73 -PGESVICHETAHIYTDECGAPEFFGGGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTAT-EGGTVYPLD 150 (342)
T ss_pred -CCCeEEEeccccceecccCcHHHHcCCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccC-CCceecCHH
Confidence 12258899999999988743 333 443333344799999999999998632 233467777777776 888884
Q ss_pred cHHHHHHHHHhcCCEEEEeccccccccc--cchhhhhhcCCCcccEEEEcCCccCCCCcCc
Q psy13453 702 NLEELGPICQEYNIWLHVDAAYAGSALL--LPEYAHLKRGLEYVDSFDFNTHKWLLVNFDC 760 (764)
Q Consensus 702 pl~eIa~i~~~~glwLHVDaA~Gg~~l~--~~~~r~~l~gie~aDSit~d~HK~l~~P~~~ 760 (764)
.|++|.++|++||+.||+|||--+.++. -+..+....++ ||+++.+.|.++.|.+.
T Consensus 151 el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~---D~v~~~~tK~g~~~~gA 208 (342)
T COG2008 151 ELEAISAVCKEHGLPLHMDGARLANALVALGVALKTIKSYV---DSVSFCLTKGGGAPVGA 208 (342)
T ss_pred HHHHHHHHHHHhCCceeechHHHHHHHHHcCCCHHHHHhhC---CEEEEecccCCcceeee
Confidence 5556677899999999999994443332 23334444444 99999999999999764
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.45 E-value=8e-13 Score=144.78 Aligned_cols=173 Identities=17% Similarity=0.156 Sum_probs=118.7
Q ss_pred ccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceE
Q psy13453 554 WLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633 (764)
Q Consensus 554 ~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~v 633 (764)
+..+|...++|+. +++++|.+. ++++++||++++.++.+.... ++..
T Consensus 36 ~~~~~~~~~l~~~----la~~~~~~~-----------~~~~~~Gs~a~~~~l~~~~~~------------------~gd~ 82 (353)
T PLN02721 36 LGYDPTALRLEEE----MAKIFGKEA-----------ALFVPSGTMGNLISVLVHCDV------------------RGSE 82 (353)
T ss_pred cCCCHHHHHHHHH----HHHHhCCce-----------eEEecCccHHHHHHHHHHccC------------------CCCe
Confidence 3345666666654 566666532 588899999998777653210 1224
Q ss_pred EEecCCcchhHHH---HHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcC-CCceEEEEee-ccCCccccc---cHHH
Q psy13453 634 AYTSDQSNSSVEK---SAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKG-LIPCCLIATL-GTTGTCAFD---NLEE 705 (764)
Q Consensus 634 i~~S~~aH~Sv~k---Aa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G-~~p~~Vvata-GTT~~GaiD---pl~e 705 (764)
|++++.+|+++.+ .+...|++++.+|.++++.+|+++|++.|++....+ ..+.+|+.+. -++.+|.+- ++++
T Consensus 83 Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~ 162 (353)
T PLN02721 83 VILGDNSHIHLYENGGISTLGGVHPRTVKNNEDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDK 162 (353)
T ss_pred EEEcCccceehhcccchhhhcCceeEecCCCcCCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHH
Confidence 7889999998887 467789999999998889999999999997543222 2344555544 344567653 4889
Q ss_pred HHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCc
Q psy13453 706 LGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDC 760 (764)
Q Consensus 706 Ia~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~ 760 (764)
|+++|++||+|+|+|+||............. .-.+.+|++++++|||++.|.|+
T Consensus 163 l~~l~~~~g~~livD~a~~~~~~~~~~~~~~-~~~~~~d~~~~s~sK~l~~~~G~ 216 (353)
T PLN02721 163 VGELAKRHGLKLHIDGARIFNASVALGVPVH-RLVKAADSVSVCLSKGLGAPVGS 216 (353)
T ss_pred HHHHHHHcCCEEEEEchhhhcchhhhCCCHH-HHhhhCCEEEEecccccCCceee
Confidence 9999999999999999975332111111111 11235699999999999988664
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.43 E-value=4e-12 Score=137.78 Aligned_cols=187 Identities=17% Similarity=0.084 Sum_probs=139.8
Q ss_pred HhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCc
Q psy13453 545 GAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLT 624 (764)
Q Consensus 545 ~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~ 624 (764)
...+.+...+...+...++++.+.+++...+|.+.. ....++++|+|+++..++.+...
T Consensus 23 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~-------~~~~~~~~~~t~a~~~~~~~~~~-------------- 81 (350)
T cd00609 23 AALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVP-------PEEIVVTNGAQEALSLLLRALLN-------------- 81 (350)
T ss_pred HhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCC-------cceEEEecCcHHHHHHHHHHhCC--------------
Confidence 456666777788888999999999999998876332 24578999999998777665421
Q ss_pred cccccCceEEEecCCcchhHHHHHHhCCCceEEEecCCCCcccH--HHHHHHHHHhhhcCCCceEEEEeeccCCcccccc
Q psy13453 625 ENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRG--DALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN 702 (764)
Q Consensus 625 ~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~--~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp 702 (764)
++..|+++..+|.++.++++.+|..++.+|.++++.++. +.+++.+.+ .+-+|+++.+++.+|.+.|
T Consensus 82 -----~g~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------~~~~v~i~~~~~~tG~~~~ 150 (350)
T cd00609 82 -----PGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTP------KTKLLYLNNPNNPTGAVLS 150 (350)
T ss_pred -----CCCEEEEcCCCchhHHHHHHHCCCEEEEEecccccCCccCHHHHHhhcCc------cceEEEEECCCCCCCcccC
Confidence 123588899999999999999999999999998888876 555544322 3558888889999999998
Q ss_pred HHHHH---HHHHhcCCEEEEeccccccccccchhhh-hhcCCCcccEEEEcCCccCC-CCcCceee
Q psy13453 703 LEELG---PICQEYNIWLHVDAAYAGSALLLPEYAH-LKRGLEYVDSFDFNTHKWLL-VNFDCSAM 763 (764)
Q Consensus 703 l~eIa---~i~~~~glwLHVDaA~Gg~~l~~~~~r~-~l~gie~aDSit~d~HK~l~-~P~~~g~l 763 (764)
++++. ++|+++|+|+|+|+||+++......... ...+...+|.+..++||+++ .+.++|++
T Consensus 151 ~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i 216 (350)
T cd00609 151 EEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYL 216 (350)
T ss_pred HHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccCCcccceEEE
Confidence 66665 8999999999999999886543221100 11122245888899999998 45567765
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-12 Score=142.61 Aligned_cols=162 Identities=15% Similarity=0.159 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchh
Q psy13453 564 EVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSS 643 (764)
Q Consensus 564 E~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~S 643 (764)
-.++.+++++++| ++ ..++|+|||++|..++.+.. . ++..|+++..+|++
T Consensus 34 ~~~l~~~~a~~~g-~~----------~~~~~~~gt~a~~~~~~~l~----~---------------~gd~v~~~~~~~~~ 83 (338)
T cd06502 34 TAKLEARAAELFG-KE----------AALFVPSGTAANQLALAAHT----Q---------------PGGSVICHETAHIY 83 (338)
T ss_pred HHHHHHHHHHHhC-CC----------eEEEecCchHHHHHHHHHhc----C---------------CCCeEEEecCccee
Confidence 4455678899988 43 58999999999887776431 1 12257789999988
Q ss_pred HHHH---HHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcC-CCceEEEEeeccCCccc---cccHHHHHHHHHhcCCE
Q psy13453 644 VEKS---AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKG-LIPCCLIATLGTTGTCA---FDNLEELGPICQEYNIW 716 (764)
Q Consensus 644 v~kA---a~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G-~~p~~VvataGTT~~Ga---iDpl~eIa~i~~~~glw 716 (764)
+.++ +.+.|++++.+|.+. +.+|+++|++++++..+++ ..+-+|+.+..++ +|. .+++++|+++|++||+|
T Consensus 84 ~~~~~~~~~~~g~~~~~v~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n-~g~~~~~~~l~~i~~~~~~~~~~ 161 (338)
T cd06502 84 TDEAGAPEFLSGVKLLPVPGEN-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTE-GGTVYPLDELKAISALAKENGLP 161 (338)
T ss_pred eecCCcHHHHcCceEEeecCCC-CcCCHHHHHHHhhccCCCcCCcceEEEEEeecC-CccccCHHHHHHHHHHHHHcCCe
Confidence 7653 456899999999865 8899999999997532211 2355666666665 453 57889999999999999
Q ss_pred EEEeccccccccccc--hhhhhhcCCCcccEEEEcCCccCCCCcCc
Q psy13453 717 LHVDAAYAGSALLLP--EYAHLKRGLEYVDSFDFNTHKWLLVNFDC 760 (764)
Q Consensus 717 LHVDaA~Gg~~l~~~--~~r~~l~gie~aDSit~d~HK~l~~P~~~ 760 (764)
+|||+||+.+..... ...... ..+|.++.++|||++.|.++
T Consensus 162 livDea~~~~~~~~~~~~~~~~~---~~~d~~~~s~sK~~~~~~g~ 204 (338)
T cd06502 162 LHLDGARLANAAAALGVALKTYK---SGVDSVSFCLSKGGGAPVGA 204 (338)
T ss_pred EeechHHHHHHHHhcCCCHHHHH---hcCCEEEEeccccCCCccce
Confidence 999999864322111 111111 35699999999999988654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.6e-12 Score=140.16 Aligned_cols=172 Identities=14% Similarity=0.003 Sum_probs=128.5
Q ss_pred CchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEe
Q psy13453 557 SPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYT 636 (764)
Q Consensus 557 sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~ 636 (764)
++.......++.+.+++++|.+++ ....++|++||+++..++..... + ++-+++.
T Consensus 32 ~~~~~~~~~~~~~~l~~l~~~~~~-------~~~i~~~~~gt~~l~~~~~~l~~---~---------------~~~vlv~ 86 (368)
T PRK13479 32 DDDFNALTASVRAKLVAIATGEEG-------YTCVPLQGSGTFSVEAAIGSLVP---R---------------DGKVLVP 86 (368)
T ss_pred ChHHHHHHHHHHHHHHHHhCCCCC-------ceEEEEcCCcHHHHHHHHHhccC---C---------------CCeEEEE
Confidence 355667888999999999998642 12356899999998777654311 0 1223333
Q ss_pred cCCcchhH--HHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcC
Q psy13453 637 SDQSNSSV--EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYN 714 (764)
Q Consensus 637 S~~aH~Sv--~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~g 714 (764)
...+|.. .+.+...|++++.||++.++.+|+++|++++++..+ +-+|..+..+|.+|.+.|+++|+++|+++|
T Consensus 87 -~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~----~~~v~~~~~~~~tG~~~~~~~i~~l~~~~~ 161 (368)
T PRK13479 87 -DNGAYGARIAQIAEYLGIAHVVLDTGEDEPPDAAEVEAALAADPR----ITHVALVHCETTTGILNPLDEIAAVAKRHG 161 (368)
T ss_pred -eCCchHHHHHHHHHHcCCcEEEEECCCCCCCCHHHHHHHHHhCCC----CcEEEEEcccCccccccCHHHHHHHHHHcC
Confidence 3445443 577888999999999988889999999999875321 336778888999999999999999999999
Q ss_pred CEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 715 IWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 715 lwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
++++||++++.+.... .+... .+|.+..++|||++.|.|+|++|
T Consensus 162 ~~livDa~~~~g~~~~-----~~~~~-~~d~~v~s~~K~l~g~~G~G~l~ 205 (368)
T PRK13479 162 KRLIVDAMSSFGAIPI-----DIAEL-GIDALISSANKCIEGVPGFGFVI 205 (368)
T ss_pred CEEEEEcccccCCccc-----ccccc-CceEEEecCccccccCCCceEEE
Confidence 9999998875543221 12211 36999999999999999999875
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.5e-12 Score=146.74 Aligned_cols=236 Identities=9% Similarity=-0.023 Sum_probs=155.7
Q ss_pred ccccCCcceeeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccc-cCchhhh
Q psy13453 11 AYPSETLSLLIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDI-QSLNAPV 89 (764)
Q Consensus 11 ~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~i-Dpi~~ia 89 (764)
.+.++. .|-|..++++.+|+.. +.||+++++++|+++|+++|++++ -.++.+.++ ++|.+ +|+++++
T Consensus 164 Vlv~~~---~hp~~~~~~~~~G~~v---v~v~~~~~~~~D~e~L~~~i~~~t-----~~V~v~~Pn-~tG~~~~dl~eI~ 231 (481)
T PRK04366 164 VIVPDS---AHGTNPASAAMAGFKV---VEIPSNEDGLVDLEALKAAVGEDT-----AALMLTNPN-TLGLFERNILEIA 231 (481)
T ss_pred EEEcCC---ccHhHHHHHHHcCCEE---EEeecCCCCCcCHHHHHhhcccCC-----eEEEEeCCC-CccccchHHHHHH
Confidence 555665 6888889999999976 999999889999999999997642 244556788 89998 6899988
Q ss_pred c-----CCCceeccccc---------------------cc-----------cceeeeecCCCc--ccc--------cccc
Q psy13453 90 S-----NGPLKVGGVLR---------------------RV-----------YSSCLVPRGQKS--LRT--------TVLF 122 (764)
Q Consensus 90 ~-----~~wlHVDa~l~---------------------~~-----------y~s~ll~rd~~~--l~~--------~~s~ 122 (764)
+ +.|+|||++.. |+ +++++.++++-. +.. .|..
T Consensus 232 ~~a~~~gal~iVD~a~~~~~~g~~~~~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~~v~~~g~~~~l 311 (481)
T PRK04366 232 EIVHEAGGLLYYDGANLNAILGKARPGDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVPVVEKDGDRYRL 311 (481)
T ss_pred HHHHHcCCEEEEEecChhhhcccCCccccCCCEEEEechhhcCCCCCCCCCCeeeeeehhhhHhhCCCCeeeccCCceee
Confidence 6 78999998520 11 112344443210 000 0000
Q ss_pred ccccCCcccCCCCccc-----HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCC-CCceeEEEEeecc
Q psy13453 123 HFLFQHWQIPLGRRFR-----ALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCP-PSMGLVCFRLKVR 196 (764)
Q Consensus 123 ~~d~~d~tle~SRr~~-----ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~-P~l~iV~Fry~P~ 196 (764)
..+ +...+.-.|.+. +++.|+.|+++|.+|++++.++++++|+||++.|++. +++..+ |.++.+.|.. .
T Consensus 312 ~~~-r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~--~~~~~~~~~~~~~~~~~--~ 386 (481)
T PRK04366 312 DYD-RPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDI--YDLPYDRPCMHEFVLSG--K 386 (481)
T ss_pred ccc-ccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--CcccCCCCeeEEEEEEC--c
Confidence 000 111222233333 4688999999999999999999999999999999987 454432 3333333332 1
Q ss_pred ccccccccccCccCCccHHHHHHHHHHHhcCcEEEEece-eCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHccCC
Q psy13453 197 FWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGS-FQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLRGKS 275 (764)
Q Consensus 197 ~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~-l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~~~~ 275 (764)
... ..+.-..++.++|.++|+....... .-....+|++++- .++++|||.+++.++++.+++.+++.
T Consensus 387 ~~~-----------~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~~~l~is~~e-~~t~edid~l~~~l~~i~~~~~~~~~ 454 (481)
T PRK04366 387 KLK-----------ETGVRTLDIAKRLLDYGFHPPTIYFPLIVPEALMIEPTE-TESKETLDAFIAAMKQIAEEAKENPE 454 (481)
T ss_pred ccc-----------ccCCCHHHHHHHHHHCCccCCccccccccCCeEEEcccC-CCCHHHHHHHHHHHHHHHHHHHhCcH
Confidence 000 0011246799999999985331110 1113468887555 67899999999999999999887763
|
|
| >KOG1368|consensus | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-12 Score=135.10 Aligned_cols=174 Identities=17% Similarity=0.245 Sum_probs=124.4
Q ss_pred CccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccC
Q psy13453 551 GFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRN 630 (764)
Q Consensus 551 ~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~ 630 (764)
-..|...|-+.+||+++ ++++|- ..|.|+++||++|++|++..... +
T Consensus 49 DdVyGeD~tt~rLE~~v----A~l~GK-----------EAgLFv~SGTmgNllaIm~Hc~~------------------r 95 (384)
T KOG1368|consen 49 DDVYGEDPTTNRLEQRV----AELFGK-----------EAGLFVPSGTMGNLLAIMVHCHQ------------------R 95 (384)
T ss_pred cccccCCccHHHHHHHH----HHHhCc-----------cceeeecccccccHHHHHHHhcC------------------C
Confidence 47788999999999976 555553 24899999999999999876543 1
Q ss_pred ceEEEecCCcchhHHHHH---HhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccC--Ccc-ccccHH
Q psy13453 631 KLVAYTSDQSNSSVEKSA---IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTT--GTC-AFDNLE 704 (764)
Q Consensus 631 ~~vi~~S~~aH~Sv~kAa---~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT--~~G-aiDpl~ 704 (764)
+-.|++.+.+|.-..+++ .+.|+.++.|...++|.||++++|++|....-.-+.|.-=.+...+| ++| .+=||+
T Consensus 96 g~eii~gd~~HI~~~E~gg~s~l~gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle 175 (384)
T KOG1368|consen 96 GSEIIVGDRAHIHRYEQGGISQLAGVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLE 175 (384)
T ss_pred CceEEeccchheeehhccChhhhccceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHH
Confidence 235889999997766664 34678899999999999999999999985432222333222233333 335 666666
Q ss_pred H---HHHHHHhcCCEEEEecc--ccccccc-cchhhhhhcCCCcccEEEEcCCccCCCCcCce
Q psy13453 705 E---LGPICQEYNIWLHVDAA--YAGSALL-LPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCS 761 (764)
Q Consensus 705 e---Ia~i~~~~glwLHVDaA--~Gg~~l~-~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g 761 (764)
+ |.++|+++|+.||+||| |.++... +|- +.. .+.+||+++.+.|.|++|.|+=
T Consensus 176 ~~~~v~~lak~~glkLH~DGARi~NAavasgV~v-k~i---~~~fDSVsiCLSKglgAPVGSV 234 (384)
T KOG1368|consen 176 ELDRVKALAKRHGLKLHMDGARIFNAAVASGVPV-KKI---CSAFDSVSICLSKGLGAPVGSV 234 (384)
T ss_pred HHHHHHHHHhccCCeeecchhhhhhHHHHcCCCH-HHH---HHhhhhhhhhhhccCCCCcccE
Confidence 5 55679999999999999 3333222 221 222 2356999999999999999853
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.5e-12 Score=143.55 Aligned_cols=169 Identities=19% Similarity=0.156 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
..-.++.+.+++++|.+.+| ++|.|+|.+|+.++.++.. +.-.|++...+|
T Consensus 66 G~I~eAe~~aA~~fGAd~t~----------flvnGsT~g~~a~i~a~~~-------------------~gd~VLv~RN~H 116 (417)
T PF01276_consen 66 GIIKEAEELAARAFGADKTF----------FLVNGSTSGNQAMIMALCR-------------------PGDKVLVDRNCH 116 (417)
T ss_dssp THHHHHHHHHHHHHTESEEE----------EESSHHHHHHHHHHHHHTT-------------------TTCEEEEETT--
T ss_pred cHHHHHHHHHHHhcCCCeEE----------EEecCchHHHHHHHHHhcC-------------------CCCEEEEcCCcH
Confidence 35566778899999998864 4667777888887776532 123689999999
Q ss_pred hhHHHHHHhCCCceEEEecCC-----CCcccH-----HHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHH
Q psy13453 642 SSVEKSAIIGDVPVRQLRSDD-----NGVLRG-----DALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQ 711 (764)
Q Consensus 642 ~Sv~kAa~~lGl~v~~Vp~d~-----~g~md~-----~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~ 711 (764)
-|+..|+.+.|+..+.|+... -+.+++ +.++++|++....+. +-+|++|..|. .|.+-||++|+++|+
T Consensus 117 kSv~~alil~ga~Pvyi~p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~-~~~vvlt~PTY-~Gv~~di~~I~~~~h 194 (417)
T PF01276_consen 117 KSVYNALILSGAIPVYIPPEDNEYGIIGGISPDEFNEEDIEEALKEHPDAKA-PRLVVLTSPTY-YGVCYDIKEIAEICH 194 (417)
T ss_dssp HHHHHHHHHHTEEEEEEEEEE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHC-ESEEEEESS-T-TSEEE-HHHHHHHHC
T ss_pred HHHHHHHHHcCCeEEEecCCccccCCccCCChhhhhHHHHHHHHHhCccccC-ceEEEEeCCCC-CeEEECHHHHHHHhc
Confidence 999999999999988888741 124666 999999997654322 55677777655 799999999999999
Q ss_pred hcCCEEEEeccccccccccchhhhhhcCCCccc-------EEEEcCCccCCCCcCceee
Q psy13453 712 EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVD-------SFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 712 ~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aD-------Sit~d~HK~l~~P~~~g~l 763 (764)
++++.||||.|||+.+.|.+-.+..+ .+ .|| -++-|.||.|.+-.+++++
T Consensus 195 ~~~~~llvDEAhGah~~F~~lp~~a~-~~-gad~~~~~~~~vvqS~HKtL~altQts~l 251 (417)
T PF01276_consen 195 KHGIPLLVDEAHGAHFGFHPLPRSAL-AL-GADRPNDPGIIVVQSTHKTLPALTQTSML 251 (417)
T ss_dssp CTECEEEEE-TT-TTGGCSGGGTTCS-ST-TSS-CTSBEEEEEEEHHHHSSS-TT-EEE
T ss_pred ccCCEEEEEccccccccCCCCccchh-hc-cCccccccceeeeechhhcccccccceEE
Confidence 99999999999999988885444432 12 478 9999999999999988876
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.34 E-value=3e-11 Score=134.21 Aligned_cols=173 Identities=18% Similarity=0.104 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCC
Q psy13453 560 CTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQ 639 (764)
Q Consensus 560 ~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~ 639 (764)
...+.+++.+++++++|.+ ..++|+|+|+|++.++.+.... ..+.--..+.. ...+.-.|+++.
T Consensus 43 ~~~~~~~~~~~~a~~~g~~-----------~~~~~~g~t~al~~al~al~~~---Gd~~~~~~~~~-s~~~~~eVi~~~- 106 (363)
T TIGR01437 43 IKELVNKTGEYIANLLGVE-----------DAVIVSSASAGIAQSVAAVITR---GNRYLVENLHD-SKIEVNEVVLPK- 106 (363)
T ss_pred HHHHHHHHHHHHHHhhCCC-----------eEEEEcCHHHHHHHHHHHHhcC---CCcchhhcccc-cccccceEEEEC-
Confidence 4567788889999999864 3589999999999988765321 10000000000 001111344544
Q ss_pred cchhH-----HHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcC
Q psy13453 640 SNSSV-----EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYN 714 (764)
Q Consensus 640 aH~Sv-----~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~g 714 (764)
.|+.. ..++.+.|..++.+++ ++.+|+++|+++|.+.++ .++..+...+.+|.+-|+++|+++|++||
T Consensus 107 ~~~~~~~~~~~~~~~~~g~~~v~v~~--~~~~d~~~le~ai~~~t~-----ai~~v~~~~~~~g~~~~~~~i~~~a~~~g 179 (363)
T TIGR01437 107 GHNVDYGAPVETMVRLGGGKVVEAGY--ANECSAEQLEAAITEKTA-----AILYIKSHHCVQKSMLSVEDAAQVAQEHN 179 (363)
T ss_pred ccchhcCCchHHHHHhcCCeEEEEcC--CCCCCHHHHHHhcChhce-----EEEEEecCCCCcCCcCCHHHHHHHHHHcC
Confidence 66653 3456778888888876 467999999999986543 23335555667899999999999999999
Q ss_pred CEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 715 IWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 715 lwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
+++|+|+||+... +...+ + .+|.+++++|||++.|. .|+++
T Consensus 180 i~vivD~a~~~~~------~~~~~-~-g~D~~~~S~~K~l~gp~-~G~l~ 220 (363)
T TIGR01437 180 LPLIVDAAAEEDL------QKYYR-L-GADLVIYSGAKAIEGPT-SGLVL 220 (363)
T ss_pred CeEEEECCCCCch------HHHHH-c-CCCEEEEeCCcccCCCc-eEEEE
Confidence 9999999997311 11111 1 36999999999999997 67653
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.2e-11 Score=135.67 Aligned_cols=197 Identities=14% Similarity=0.071 Sum_probs=131.7
Q ss_pred CCCCCccccccCCCCChHHHHHHHHHHhhccc--Ccccc-CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeC
Q psy13453 519 HWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLI--GFSWL-SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQS 595 (764)
Q Consensus 519 ~~~~P~~~~~~~~~~~~~~~lad~l~~~lN~n--~~~~~-~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTs 595 (764)
.+.+-+|+++.. .+.....+.+.+....+.. ...+. ..+...++| +.+++++|.+. .+||+
T Consensus 58 ~~~~~~YL~l~~-~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le----~~la~~~g~~~-----------~~~~~ 121 (407)
T PRK07179 58 ILQSNDYLNLSG-HPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFE----KKLAAFTGFES-----------CLLCQ 121 (407)
T ss_pred EeecCCccCCCC-CHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHH----HHHHHHhCCCc-----------EEEEC
Confidence 355556777762 2333344444444332221 11121 224555666 47777788743 48999
Q ss_pred ChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHH
Q psy13453 596 TASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAV 675 (764)
Q Consensus 596 GgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I 675 (764)
||++||..++.+... +...++++..+|.|+...+...|..+..++ ..|+++|+++|
T Consensus 122 sG~~An~~~l~~l~~-------------------~g~~v~~~~~~h~s~~~~~~~~g~~~~~~~-----~~d~~~l~~~l 177 (407)
T PRK07179 122 SGWAANVGLLQTIAD-------------------PNTPVYIDFFAHMSLWEGVRAAGAQAHPFR-----HNDVDHLRRQI 177 (407)
T ss_pred CHHHHHHHHHHHhCC-------------------CCCEEEEECCcCHHHHHHHHHCCCeEEEec-----CCCHHHHHHHH
Confidence 999999888764321 112577899999999998888888765443 25899999998
Q ss_pred HHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhh--cCC-CcccEEEEcCCc
Q psy13453 676 KEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLK--RGL-EYVDSFDFNTHK 752 (764)
Q Consensus 676 ~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l--~gi-e~aDSit~d~HK 752 (764)
++. .+.+|+....++.+|.+.|+++|+++|++||+++|+|.+|+.+..- +..+..+ -|+ +.+|.++.++||
T Consensus 178 ~~~-----~~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~~~livDea~~~g~~g-~~g~g~~~~~~~~~~vdi~~~S~sK 251 (407)
T PRK07179 178 ERH-----GPGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHSLGTHG-PQGAGLVAELGLTSRVHFITASLAK 251 (407)
T ss_pred Hhc-----CCeEEEECCCCCCCCccccHHHHHHHHHHcCCEEEEECcccccCcC-CCCCchHHhcCCCCCCCEEEeechH
Confidence 652 1457777778889999999999999999999999999999864321 1111001 122 356999999999
Q ss_pred cCCCCcCceee
Q psy13453 753 WLLVNFDCSAM 763 (764)
Q Consensus 753 ~l~~P~~~g~l 763 (764)
+++.+ +|++
T Consensus 252 ~~g~~--~G~l 260 (407)
T PRK07179 252 AFAGR--AGII 260 (407)
T ss_pred hhhcc--CeEE
Confidence 99854 5655
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-11 Score=137.09 Aligned_cols=161 Identities=17% Similarity=-0.016 Sum_probs=121.8
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeC-ChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQS-TASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVA 634 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTs-GgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi 634 (764)
.++.+.++-.++.+.+++++|.++. ...+|++ +||+++-.++... ... ++..+
T Consensus 42 r~~~f~~~~~~~r~~l~~l~~~~~~--------~~v~~~~gs~T~~~~~~~~~l----~~~--------------~~~~v 95 (378)
T PRK03080 42 RQKPVKALLKRVIEGTRELLSLPEG--------YEVGIVPGSDTGAWEMALWSL----LGA--------------RRVDH 95 (378)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCC--------ceEEEECCchHHHHHHHHHhc----CCC--------------CcceE
Confidence 3567889999999999999998653 3467775 8888865554321 110 02223
Q ss_pred EecCCcchhHHHH--HHhCCC-ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHH
Q psy13453 635 YTSDQSNSSVEKS--AIIGDV-PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQ 711 (764)
Q Consensus 635 ~~S~~aH~Sv~kA--a~~lGl-~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~ 711 (764)
+. ...|.+.... ++..|+ +++.++.+..+..|+++++. . -.|+.|..+|.+|.+.|+++|++ +
T Consensus 96 i~-~g~f~~~~~~~~~~~~g~~~v~~~~~~~g~~~d~~~i~~-----~------~~V~~~h~~t~tG~~~pi~~I~~--~ 161 (378)
T PRK03080 96 LA-WESFGSKWATDVVKQLKLEDPRVLEADYGSLPDLSAVDF-----D------RDVVFTWNGTTTGVRVPVARWIG--A 161 (378)
T ss_pred EE-eCHHHHHHHHHHHhhcCCCCceEeccCCCCCCCHhhcCC-----C------CCEEEEecCCccceeccchhhcc--c
Confidence 33 4677765443 356799 99999988777888776332 1 15889999999999999999999 8
Q ss_pred hcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 712 EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 712 ~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
++|+++.|||+++.+....+- +. +|.+.++.||||+.|.|+|++|
T Consensus 162 ~~g~~~vVDa~qs~G~~pidv-----~~---iD~~~~s~~K~l~~P~G~g~l~ 206 (378)
T PRK03080 162 DREGLTICDATSAAFALPLDW-----SK---LDVYTFSWQKVLGGEGGHGMAI 206 (378)
T ss_pred cCCCeEEEecccccccCCCCH-----HH---CcEEEEehhhhCCCCCceEEEE
Confidence 899999999999998776652 22 4999999999999999999986
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.7e-11 Score=128.80 Aligned_cols=161 Identities=12% Similarity=-0.003 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
.....++.+++++++|.+. .+++++||++|+.++.+.. . ++..|++++..
T Consensus 45 ~~~~~~l~~~la~~~~~~~-----------~iv~~sg~~a~~~~~~~~~----~---------------~gd~Vl~~~~~ 94 (349)
T cd06454 45 SDLHEELEEELAEFHGKEA-----------ALVFSSGYAANDGVLSTLA----G---------------KGDLIISDSLN 94 (349)
T ss_pred chHHHHHHHHHHHHhCCCC-----------EEEeccHHHHHHHHHHHhc----C---------------CCCEEEEehhh
Confidence 4455566677888887643 4777888998887665432 1 11257788999
Q ss_pred chhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEe
Q psy13453 641 NSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVD 720 (764)
Q Consensus 641 H~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVD 720 (764)
|.++..++...|..++.++. +|++.+++.|++.. +...+.+|+.+..++.+|.+.|+++|+++|+++|+++++|
T Consensus 95 ~~~~~~~~~~~g~~~~~~~~-----~~~~~le~~i~~~~-~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~livD 168 (349)
T cd06454 95 HASIIDGIRLSGAKKRIFKH-----NDMEDLEKLLREAR-RPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVD 168 (349)
T ss_pred hHHHHHHHHHcCCceEEecC-----CCHHHHHHHHHHhh-ccCCCeEEEEeccccCCCCccCHHHHHHHHHHcCCEEEEE
Confidence 99999999999998887752 58889999987643 2235678888888889999999999999999999999999
Q ss_pred ccccccccc-cchhhhhhc-CCCcccEEEEcCCccCCCC
Q psy13453 721 AAYAGSALL-LPEYAHLKR-GLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 721 aA~Gg~~l~-~~~~r~~l~-gie~aDSit~d~HK~l~~P 757 (764)
++|+.+.+. .......+. ....+|.++.++||+++.+
T Consensus 169 ~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 207 (349)
T cd06454 169 EAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGAV 207 (349)
T ss_pred ccccccccCCCCCChhhhccccccCcEEEeechhhhccc
Confidence 999754331 110000111 1235699999999999864
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.8e-11 Score=141.32 Aligned_cols=172 Identities=17% Similarity=0.142 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
.+-.++.+..+++||.+.+| +.|.|+|.+|+.++.++.. +.-.|++...+|
T Consensus 205 G~I~eAq~~aA~~fgA~~t~----------FlvNGST~gn~a~i~a~~~-------------------~gd~Vlv~RN~H 255 (755)
T PRK15029 205 GAFGESEKYAARVFGADRSW----------SVVVGTSGSNRTIMQACMT-------------------DNDVVVVDRNCH 255 (755)
T ss_pred cHHHHHHHHHHHHhCCCcEE----------EEeCChhHHHHHHHHHhcC-------------------CCCEEEeecccH
Confidence 35566777899999998764 4778888888866654421 123688999999
Q ss_pred hhHHHHHHhCCCceEEEecC--C---CCccc-----HHHHHHHHHHhh----hcCCCceEEEEeeccCCccccccHHHHH
Q psy13453 642 SSVEKSAIIGDVPVRQLRSD--D---NGVLR-----GDALLTAVKEDL----AKGLIPCCLIATLGTTGTCAFDNLEELG 707 (764)
Q Consensus 642 ~Sv~kAa~~lGl~v~~Vp~d--~---~g~md-----~~~Le~~I~~~~----~~G~~p~~VvataGTT~~GaiDpl~eIa 707 (764)
-|+..|+.+.|+..+.++.. + -+.++ ++.++++|++.. +++.+|..|++|..|. .|.+-|+++|+
T Consensus 256 KSv~~al~L~ga~Pvyl~P~~~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~di~~I~ 334 (755)
T PRK15029 256 KSIEQGLILTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCYNAKEAQ 334 (755)
T ss_pred HHHHHHHHHcCCeEEEecccccccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC-cceeeCHHHHH
Confidence 99999999999988888654 1 23455 999999997642 2356788888888765 69999999999
Q ss_pred HHHHhcCCEEEEeccccccccccchhhh--hhc----CCCccc-EEEEcCCccCCCCcCceee
Q psy13453 708 PICQEYNIWLHVDAAYAGSALLLPEYAH--LKR----GLEYVD-SFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 708 ~i~~~~glwLHVDaA~Gg~~l~~~~~r~--~l~----gie~aD-Sit~d~HK~l~~P~~~g~l 763 (764)
++|++++++||||.|||+.+.|.|.+.. -+. .-..|| -++-|.||+|.+-.++++|
T Consensus 335 ~~~h~~~~~llvDEAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~L 397 (755)
T PRK15029 335 DLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYI 397 (755)
T ss_pred HHHHhcCCeEEEECccccccccCccccccccccccccccCCCceEEEEchhhcccchhhhhhh
Confidence 9999999999999999999999887653 121 013588 9999999999987777654
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.8e-11 Score=131.48 Aligned_cols=158 Identities=13% Similarity=0.040 Sum_probs=115.0
Q ss_pred cCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEE
Q psy13453 555 LSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVA 634 (764)
Q Consensus 555 ~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi 634 (764)
...|...++|+ .+++++|.+ ..++|++||+|+..++.+.+. .++-.|
T Consensus 15 ~~~~~~~~~~~----~la~~~~~~-----------~~~~~~sgt~al~~~l~~l~~------------------~~gd~v 61 (352)
T cd00616 15 TLGPKVREFEK----AFAEYLGVK-----------YAVAVSSGTAALHLALRALGI------------------GPGDEV 61 (352)
T ss_pred cCCHHHHHHHH----HHHHHhCCC-----------eEEEECCHHHHHHHHHHHcCC------------------CCCCEE
Confidence 34555555555 677777753 368999999998888765421 012358
Q ss_pred EecCCcchhHHHHHHhCCCceEEEecCC-CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhc
Q psy13453 635 YTSDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEY 713 (764)
Q Consensus 635 ~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~-~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~ 713 (764)
+++..+|.+...++...|++++.+++++ ++.+|+++|++++++. +-+|+.+ +.+|...|+++|.++|+++
T Consensus 62 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~------~~~v~~~---~~~G~~~~~~~i~~l~~~~ 132 (352)
T cd00616 62 IVPSFTFVATANAILLLGATPVFVDIDPDTYNIDPELIEAAITPR------TKAIIPV---HLYGNPADMDAIMAIAKRH 132 (352)
T ss_pred EeCCcchHHHHHHHHHcCCeEEEEecCCCcCCcCHHHHHHhcCcC------CeEEEEE---CCCCCcCCHHHHHHHHHHc
Confidence 8999999999999999999999999987 7899999999988543 3355554 3579999999999999999
Q ss_pred CCEEEEeccccccccccchhhhhhcCCCcccEEEEc--CCccCCCCcC
Q psy13453 714 NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFN--THKWLLVNFD 759 (764)
Q Consensus 714 glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d--~HK~l~~P~~ 759 (764)
|+++++|+||+.+..+..+ .+.. .+|..+++ .|||+..+.+
T Consensus 133 ~i~li~D~a~~~g~~~~~~---~~~~--~~d~~~~S~~~~K~~~~~~g 175 (352)
T cd00616 133 GLPVIEDAAQALGATYKGR---KVGT--FGDAGAFSFHPTKNLTTGEG 175 (352)
T ss_pred CCeEEEECCCCCCCeECCE---Eccc--CcceeEEcCCCCCCCcccCc
Confidence 9999999999865543321 1111 13555555 5599965543
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1e-10 Score=130.01 Aligned_cols=209 Identities=13% Similarity=0.000 Sum_probs=135.6
Q ss_pred CCCCCCccccccCCCCChHHHHHHHHHHhhccc--CccccCCch----HHHHHHHHHHHHHHHcCCCccccCCCCCCCcE
Q psy13453 518 THWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLI--GFSWLSSPA----CTELEVLVMNWLGKALGLPEEFLNCSPGPGGG 591 (764)
Q Consensus 518 ~~~~~P~~~~~~~~~~~~~~~lad~l~~~lN~n--~~~~~~sp~----~t~lE~~v~~~la~llG~p~~~~~~~~~~~~G 591 (764)
..|.+=.|+++-..+....+ +.+.+..+..+. ......+.. .+.+-.++.+.+++++|.+. .
T Consensus 7 ~~~~s~~YL~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~-----------~ 74 (370)
T PRK05937 7 IDFVTNDFLGFSRSDTLVHE-VEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPE-----------A 74 (370)
T ss_pred EEeECCCccCCCCCHHHHHH-HHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCe-----------E
Confidence 45777788888866444333 344444443221 112233333 66777788899999999854 2
Q ss_pred EEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCCCCcccHHHH
Q psy13453 592 IIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDAL 671 (764)
Q Consensus 592 vfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~L 671 (764)
++.++|+.+|+ ++..+ +.. +...|+++..+|.|+..+++.+....... +..|+++|
T Consensus 75 l~~~sG~~a~~-~~~~~----~~~--------------~~d~ii~d~~~H~sv~~~~~~~~~~~~~~-----~~~d~~~l 130 (370)
T PRK05937 75 FIVPSGYMANL-GLCAH----LSS--------------VTDYVLWDEQVHISVVYSLSVISGWHQSF-----RHNDLDHL 130 (370)
T ss_pred EEECChHHHHH-HHHHH----hCC--------------CCCEEEEEhhhhHHHHHHHHHcCCceEEe-----cCCCHHHH
Confidence 44455567775 32211 111 12367888999999999988764322222 34789999
Q ss_pred HHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhh--hhcCCCcccEEEEc
Q psy13453 672 LTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAH--LKRGLEYVDSFDFN 749 (764)
Q Consensus 672 e~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~--~l~gie~aDSit~d 749 (764)
+++|++..+.+....+|+.+..++.+|.+-|+++|+++|+++|+++|||+||+.+.+... .+. ...+.+..+-+..+
T Consensus 131 ~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~-g~g~~~~~~~~~~~~~~~t 209 (370)
T PRK05937 131 ESLLESCRQRSFGRIFIFVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDD-GKGFCHSLGYENFYAVLVT 209 (370)
T ss_pred HHHHHhhhccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCC-CCchHHhhCCCCCcEEEEe
Confidence 999986543333455677788899999999999999999999999999999996544321 110 01133333455677
Q ss_pred CCccCCCCcCceeeC
Q psy13453 750 THKWLLVNFDCSAMW 764 (764)
Q Consensus 750 ~HK~l~~P~~~g~l~ 764 (764)
++|.++ |.|+++++
T Consensus 210 lsK~~g-~~G~~vl~ 223 (370)
T PRK05937 210 YSKALG-SMGAALLS 223 (370)
T ss_pred chhhhh-cCceEEEc
Confidence 889776 78888764
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.5e-11 Score=133.93 Aligned_cols=169 Identities=17% Similarity=0.078 Sum_probs=114.2
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
..+....+|+.+.+++++++|.+.. -++++|||+++..++.+.. . +...|+
T Consensus 59 ~~~~~~~l~~~~~~~~~~~~g~~~~----------~v~~~sgt~a~~~~l~~l~----~---------------~Gd~Vl 109 (402)
T cd00378 59 GCEYVDEIEDLAIERAKKLFGAEYA----------NVQPHSGSQANLAVYFALL----E---------------PGDTIM 109 (402)
T ss_pred CchHHHHHHHHHHHHHHHHhCCCce----------eeecCCcHHHHHHHHHHhc----C---------------CCCEEE
Confidence 4556678888899999999998642 3555567899887765431 1 112466
Q ss_pred ecCCcchhHHHH-----HHhCCCceEEEecCC---CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHH
Q psy13453 636 TSDQSNSSVEKS-----AIIGDVPVRQLRSDD---NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELG 707 (764)
Q Consensus 636 ~S~~aH~Sv~kA-----a~~lGl~v~~Vp~d~---~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa 707 (764)
+++.+|.+.... +...|.+++.++++. ++.+|+++|++++.+. .|-+|+.+. +.+|...|+++|+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~-----~~~~v~~~~--~~~~~~~~~~~I~ 182 (402)
T cd00378 110 GLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALEF-----KPKLIVAGA--SAYPRPIDFKRFR 182 (402)
T ss_pred EecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHhC-----CCCEEEecC--cccCCCcCHHHHH
Confidence 666666543221 445677777776642 6899999999998642 133444433 3457788999999
Q ss_pred HHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 708 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 708 ~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
++|++||+|+++|++|..+..........+. .+|.++.++|||+..|.+..++
T Consensus 183 ~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~---~~dv~~~s~sK~l~G~~gg~i~ 235 (402)
T cd00378 183 EIADEVGAYLLVDMAHVAGLVAGGVFPNPLP---GADVVTTTTHKTLRGPRGGLIL 235 (402)
T ss_pred HHHHhcCCEEEEEccchhhhhhcccCCCccc---CCcEEEeccccCCCCCCceEEE
Confidence 9999999999999997554443221111222 4599999999999777765554
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-11 Score=139.23 Aligned_cols=157 Identities=15% Similarity=0.135 Sum_probs=114.4
Q ss_pred ccccCCcceeeeeHHHHHhhcCCCCCCeEEecC---CCCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccCch
Q psy13453 11 AYPSETLSLLIYESFKATHSLSGTPDQVRLSGL---PDSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQSLN 86 (764)
Q Consensus 11 ~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpv---d~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDpi~ 86 (764)
+|++.+ |+|+.||+.++|+++ +.||+ +++++||+++|+++|++.. . +.+++ ++|.+|+..|..|||+
T Consensus 155 I~p~~t----h~S~~kAi~~~G~~p---v~Vd~~~d~~~~~iD~e~Le~aIt~~~-~-kai~~Vv~Tp~t~~~g~~ddL~ 225 (444)
T TIGR03531 155 IWPRID----QKSCIKAISTAGFEP---RVIETVLDGDELTTDVEDIERAIEEIG-P-DNILCVLSTTSCFAPRSPDDIE 225 (444)
T ss_pred EEECcC----hHHHHHHHHHcCCeE---EEeeeeecCcCCCcCHHHHHHHHHhcc-C-CCEEEEEEcCCcCCCcchhCHH
Confidence 677754 999999999999998 88985 4689999999999998532 1 23444 6888899999999999
Q ss_pred hhhc-----CCCceeccccccc--c------------------------------ceeeeecCCCccccccccccccCCc
Q psy13453 87 APVS-----NGPLKVGGVLRRV--Y------------------------------SSCLVPRGQKSLRTTVLFHFLFQHW 129 (764)
Q Consensus 87 ~ia~-----~~wlHVDa~l~~~--y------------------------------~s~ll~rd~~~l~~~~s~~~d~~d~ 129 (764)
+|++ ++|+|||++.... + +++++.++++.+.. +.. .|
T Consensus 226 eIa~la~k~gI~lIvDaAyg~~~~~~~~~~~~g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el~~~-i~~--~y--- 299 (444)
T TIGR03531 226 EIAKICANYDIPHIVNNAYGLQSNKYMELINKAIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENFIQE-ISK--SY--- 299 (444)
T ss_pred HHHHHHHHcCCEEEEECcCcCcChhhhhhhhccccccCCCeEEEeCccCCCCCCCEEEEEECCHHHHHH-HHH--hc---
Confidence 9987 9999999965311 0 01122222221110 000 01
Q ss_pred ccCCC-CcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCC---CeEEeCCC
Q psy13453 130 QIPLG-RRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDD---RFELVCPP 184 (764)
Q Consensus 130 tle~S-Rr~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p---~~ell~~P 184 (764)
.+. ....++++|++++.+|.+||++++++..++++++.+.|++.. +.+++..|
T Consensus 300 --~g~~~~s~~~~~~~~ll~~G~~g~~~li~~~~~~a~~l~~~L~~l~~~~~~~~~~~~ 356 (444)
T TIGR03531 300 --PGRASASPSLDVLITLLSLGSKGYLELLKERKEMYKYLKELLQKLAERHGERLLDTP 356 (444)
T ss_pred --cCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcEeecCC
Confidence 111 234678999999999999999999999999999999998853 56777554
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-10 Score=129.15 Aligned_cols=165 Identities=14% Similarity=0.025 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcch
Q psy13453 563 LEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNS 642 (764)
Q Consensus 563 lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~ 642 (764)
+..++.+.+++++|.+ ..++++||++||..++.+. .. +...|++++.+|.
T Consensus 84 ~~~~le~~ia~~~g~~-----------~~ii~~~~~~a~~~~~~~l----~~---------------~gd~vi~~~~~~~ 133 (393)
T TIGR01822 84 IHKELEAKIAAFLGTE-----------DTILYASCFDANGGLFETL----LG---------------AEDAIISDALNHA 133 (393)
T ss_pred HHHHHHHHHHHHhCCC-----------cEEEECchHHHHHHHHHHh----CC---------------CCCEEEEeccccH
Confidence 3344556788888864 2577789999988554322 11 1235788999999
Q ss_pred hHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEecc
Q psy13453 643 SVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAA 722 (764)
Q Consensus 643 Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA 722 (764)
|...++...+.....++ .+|+++|+++|++..+.+..+.+|+...-.+.+|.+.|+++|+++|++||+||++|++
T Consensus 134 s~~~~~~~~~~~~~~~~-----~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li~De~ 208 (393)
T TIGR01822 134 SIIDGVRLCKAKRYRYA-----NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDEC 208 (393)
T ss_pred HHHHHHHhcCCceEEeC-----CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHHHHHHcCCEEEEECC
Confidence 99998888877654432 4899999999987544444566777666678899999999999999999999999999
Q ss_pred ccccccccc-hhhhhhcCC-CcccEEEEcCCccCCCCcCceee
Q psy13453 723 YAGSALLLP-EYAHLKRGL-EYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 723 ~Gg~~l~~~-~~r~~l~gi-e~aDSit~d~HK~l~~P~~~g~l 763 (764)
|+.+.+... ..-....++ ..+|.++.++||+++.+ ..|++
T Consensus 209 ~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~g~-r~G~~ 250 (393)
T TIGR01822 209 HATGFLGPTGRGSHELCGVMGRVDIITGTLGKALGGA-SGGFT 250 (393)
T ss_pred ccccCcCCCCCchHHhcCCCCCCeEEEEEChHHhhCC-CcEEE
Confidence 975443211 000011222 25799999999998754 34654
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-10 Score=129.87 Aligned_cols=189 Identities=13% Similarity=0.084 Sum_probs=132.6
Q ss_pred HHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhh
Q psy13453 537 SIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHW 616 (764)
Q Consensus 537 ~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~ 616 (764)
..+.+.+...+......|...+....+++.+.+++.+.+|.+-+ ....++|+|+|+++..++.+.. .
T Consensus 49 ~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~-------~~~i~~t~G~~~al~~~~~~l~----~-- 115 (391)
T PRK08361 49 KNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGVDVD-------VDNVIVTAGAYEATYLAFESLL----E-- 115 (391)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCC-------cccEEEeCChHHHHHHHHHHhc----C--
Confidence 33444444444433334545566778888899998888775321 1367899999999877665331 1
Q ss_pred ccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCC--CCcccHHHHHHHHHHhhhcCCCceEEEEeecc
Q psy13453 617 QSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLIATLGT 694 (764)
Q Consensus 617 ~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~--~g~md~~~Le~~I~~~~~~G~~p~~VvataGT 694 (764)
++..|++.+-+|.+....+...|++++.+|+++ ++.+|+++|++.+++. +-+|+.+..+
T Consensus 116 -------------~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~------~~~v~i~~p~ 176 (391)
T PRK08361 116 -------------EGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDELLELITKR------TRMIVINYPN 176 (391)
T ss_pred -------------CCCEEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccc------cEEEEEeCCC
Confidence 122477788889999999999999999999975 4579999999988753 3366777889
Q ss_pred CCcccccc---HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 695 TGTCAFDN---LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 695 T~~GaiDp---l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
+.+|.+-| +++|+++|+++++++++|.+|+.+..-.............-+-++.+++|.++.|
T Consensus 177 NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~ 242 (391)
T PRK08361 177 NPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMT 242 (391)
T ss_pred CCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCc
Confidence 99999988 8889999999999999999997653321111111111112356789999988766
|
|
| >KOG0630|consensus | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.3e-11 Score=128.24 Aligned_cols=251 Identities=14% Similarity=0.092 Sum_probs=166.3
Q ss_pred ccccCCcc--eeeeeHHHHHhhcCCCCCCeEEecCCC----CCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCccccccc
Q psy13453 11 AYPSETLS--LLIYESFKATHSLSGTPDQVRLSGLPD----SEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQ 83 (764)
Q Consensus 11 ~~~~~~~~--~~~YSv~KAa~~LGl~~~~v~~Vpvd~----~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iD 83 (764)
.|.||-+- ++|| ||+-||+....|..++-.+ .||||...+++.|+++..+|++|++ ||..|++.+|..|
T Consensus 234 ~YiS~alh~~l~hY----aarefGIa~~aI~~~~dhdqgeiegriDhh~feKiideDlaagkkPLilia~iGasi~GqnD 309 (838)
T KOG0630|consen 234 FYISEALHMDLLHY----AAREFGIADEAIKPILDHDQGEIEGRIDHHLFEKIIDEDLAAGKKPLILIADIGASICGQND 309 (838)
T ss_pred EEEcccccHHHHHH----HHHHhCCchhheecccccccccccccccHHHHHHHHHHHHhCCCCCeEEEEeccchhhcchH
Confidence 79999853 2334 7999999998888877754 4599999999999999999999999 7999999999999
Q ss_pred Cchhhhc------CCCceecccc-------------------------------ccccce-eeeecCCCccccccccccc
Q psy13453 84 SLNAPVS------NGPLKVGGVL-------------------------------RRVYSS-CLVPRGQKSLRTTVLFHFL 125 (764)
Q Consensus 84 pi~~ia~------~~wlHVDa~l-------------------------------~~~y~s-~ll~rd~~~l~~~~s~~~d 125 (764)
.|..+-+ ..|+|.-|.- ..+-.. ++|.|--..-. ..
T Consensus 310 mi~kildi~eahakfWLHasGhaiAALt~aepnnil~HV~eqldSMal~ialWLGiPSaPiV~LHRPleg~a------aS 383 (838)
T KOG0630|consen 310 MILKILDICEAHAKFWLHASGHAIAALTCAEPNNILGHVEEQLDSMALNIALWLGIPSAPIVLLHRPLEGSA------AS 383 (838)
T ss_pred HHHHHHHHHHHhhheeEeeccchhhheeecCcccchhHHHHHHhhccchhHHHhCCCCCceEEeeccccccc------ch
Confidence 9999776 6899988821 111111 12222111000 00
Q ss_pred cCCcccCCCCcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCC----------------C-----
Q psy13453 126 FQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCP----------------P----- 184 (764)
Q Consensus 126 ~~d~tle~SRr~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~----------------P----- 184 (764)
-..-..-.+|+.++|.+|.+++++|+..+.++++..+.++..+.+...+++++++++- |
T Consensus 384 afesdpi~rekLdaLp~Wta~q~LggKaIadmienAFll~kilfe~aSa~~eiemig~dn~aelaarl~dn~~sPfdvqa 463 (838)
T KOG0630|consen 384 AFESDPILREKLDALPLWTALQALGGKAIADMIENAFLLCKILFEGASACEEIEMIGHDNGAELAARLSDNIFSPFDVQA 463 (838)
T ss_pred hcccChHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhcCCceeEeccCCHHHHHHHHhhccCCcchHhh
Confidence 1111223568999999999999999999999999999999999999999999999862 1
Q ss_pred ----CceeEEEEeeccc-----cccc--------cccccCcc--------CCccHHHHHHHHHHHhcCcEEEEec-eeC-
Q psy13453 185 ----SMGLVCFRLKVRF-----WDKL--------DNLFGTIS--------FGDNDLNKAVYDRIIARKVIYIVKG-SFQ- 237 (764)
Q Consensus 185 ----~l~iV~Fry~P~~-----~~~~--------~~~~~~~~--------~~~d~~n~~L~~~L~~~G~~~vs~t-~l~- 237 (764)
.-.+|++.+...- .++. ++.-+... +.-|++|.+|.+-|+.+---|---+ ...
T Consensus 464 lfdaaaPtVai~~~~~tsIk~a~q~hkaaaaaaddedA~aiaeke~~deaeY~D~LNaWL~d~Llpd~~~f~fdtIE~~g 543 (838)
T KOG0630|consen 464 LFDAAAPTVAIFFDGSTSIKLAGQGHKAAAAAADDEDAEAIAEKEKIDEAEYFDRLNAWLGDGLLPDCLNFDFDTIEHGG 543 (838)
T ss_pred hhcccCCeEEEEecCceeeeccccccHHHHhhccccchhhcchhhhcchHHHHHHHHHHHhcccccCCCCCCceeeecCC
Confidence 1245665443211 1110 00000000 1125566666666654422110001 111
Q ss_pred -CeeEEEEeccCC-----CCCHHHHHHHHHHHHHHHHHHH
Q psy13453 238 -DRLFMRFAICSS-----QTEESDVQLGWNEIRTATEEVL 271 (764)
Q Consensus 238 -g~~~LRi~v~np-----~Tt~e~i~~~l~~l~~~~~~i~ 271 (764)
-..++|+|-... -...+++++|.+.++.+.+.+.
T Consensus 544 n~GiafRfCPLEhgaae~pphidhlerFaqkLea~m~Ile 583 (838)
T KOG0630|consen 544 NHGIAFRFCPLEHGAAEQPPHIDHLERFAQKLEAHMDILE 583 (838)
T ss_pred ccceeEEecccccccccCCCchHHHHHHHHHHHHHHHHHH
Confidence 146899987544 2345899999998888776554
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-10 Score=127.93 Aligned_cols=221 Identities=11% Similarity=0.019 Sum_probs=149.6
Q ss_pred ccccCCcceeeee----HHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCch
Q psy13453 11 AYPSETLSLLIYE----SFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLN 86 (764)
Q Consensus 11 ~~~~~~~~~~~YS----v~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~ 86 (764)
+..++. .|+| +.++++.+|+.. +.||+++++++|+++|+++|.++ +.+++.+.+++++|.++|++
T Consensus 91 vl~~~~---~~~~~~~~~~~~~~~~g~~~---~~v~~~~~~~~d~~~l~~~l~~~-----~~~v~~~~~~~~tG~~~~~~ 159 (373)
T cd06453 91 IVTSVM---EHHSNIVPWQQLAERTGAKL---KVVPVDDDGQLDLEALEKLLTER-----TKLVAVTHVSNVLGTINPVK 159 (373)
T ss_pred EEECcc---hhHHHHHHHHHHHhhcCcEE---EEeecCCCCCcCHHHHHHHhcCC-----ceEEEEeCcccccCCcCCHH
Confidence 444444 5666 456677888866 99999999999999999999752 33556788899999999999
Q ss_pred hhhc-----CCCceeccccc--------------------cc----c-ceeeeecCCCcccccccc---c--------cc
Q psy13453 87 APVS-----NGPLKVGGVLR--------------------RV----Y-SSCLVPRGQKSLRTTVLF---H--------FL 125 (764)
Q Consensus 87 ~ia~-----~~wlHVDa~l~--------------------~~----y-~s~ll~rd~~~l~~~~s~---~--------~d 125 (764)
++++ ++|+|+|++.. ++ . +++++.++. .... +.. . .+
T Consensus 160 ~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~g~g~~~~~~~-~~~~-~~~~~~g~~~~~~~~~~ 237 (373)
T cd06453 160 EIGEIAHEAGVPVLVDGAQSAGHMPVDVQDLGCDFLAFSGHKMLGPTGIGVLYGKEE-LLEE-MPPYGGGGEMIEEVSFE 237 (373)
T ss_pred HHHHHHHHcCCEEEEEhhhhcCceeeeccccCCCEEEeccccccCCCCcEEEEEchH-Hhhc-CCCeecCCCcccccccc
Confidence 9876 88999998431 11 0 123333221 1100 000 0 00
Q ss_pred cCCcc-----cC-CCC-cccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC--CceeEEEEeecc
Q psy13453 126 FQHWQ-----IP-LGR-RFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPP--SMGLVCFRLKVR 196 (764)
Q Consensus 126 ~~d~t-----le-~SR-r~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P--~l~iV~Fry~P~ 196 (764)
...|. .+ ++. ....+.+|.+++.+..+|+.+++++..++++++.+.++++++++++.++ ..++++|+..
T Consensus 238 ~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-- 315 (373)
T cd06453 238 ETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVRVYGDAEDRAGVVSFNLE-- 315 (373)
T ss_pred ccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCeEEEEEC--
Confidence 01111 11 122 3346788999999999999999999999999999999999999998643 4668888752
Q ss_pred ccccccccccCccCCccHHHHHHHHHHHhcCcEEEEece--------eCCeeEEEEeccCCCCCHHHHHHHHHHH
Q psy13453 197 FWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGS--------FQDRLFMRFAICSSQTEESDVQLGWNEI 263 (764)
Q Consensus 197 ~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~--------l~g~~~LRi~v~np~Tt~e~i~~~l~~l 263 (764)
+.+ ..++.++|.+.|+.+..... ......+|+++. +.++.++++.+++.|
T Consensus 316 --------------~~~--~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~-~~~t~~di~~~~~~l 373 (373)
T cd06453 316 --------------GIH--PHDVATILDQYGIAVRAGHHCAQPLMRRLGVPGTVRASFG-LYNTEEEIDALVEAL 373 (373)
T ss_pred --------------CcC--HHHHHHHHHHCCEEeccCccchhHHHHHhCCCCeEEEEec-CCCCHHHHHHHHhhC
Confidence 111 14688888888876433221 112458999654 678899999998753
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-10 Score=131.47 Aligned_cols=168 Identities=15% Similarity=0.076 Sum_probs=114.5
Q ss_pred CchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEe
Q psy13453 557 SPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYT 636 (764)
Q Consensus 557 sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~ 636 (764)
.+....+|+.+.+++++++|.+.. -+++++||+++..++.+. .. ++..|++
T Consensus 66 ~~~~~~~e~~~~~~la~~~g~~~~----------~i~~~sgt~al~~~l~~l----~~---------------~gd~Vl~ 116 (416)
T PRK00011 66 CEYVDVVEQLAIDRAKELFGAEYA----------NVQPHSGSQANAAVYFAL----LK---------------PGDTILG 116 (416)
T ss_pred chHHHHHHHHHHHHHHHHhCCCce----------eeecCCchHHHHHHHHHh----cC---------------CCCEEEE
Confidence 345677888899999999998652 244456788877665433 11 1224777
Q ss_pred cCCcchhHHH---HH--HhCCCceEEEecC-CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHH
Q psy13453 637 SDQSNSSVEK---SA--IIGDVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPIC 710 (764)
Q Consensus 637 S~~aH~Sv~k---Aa--~~lGl~v~~Vp~d-~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~ 710 (764)
+..+|.+... .. ...|.+++.++++ +++.+|+++|+++|++. .|-+|+.+ .+.+|...|+++|+++|
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~-----~~k~v~~~--~~~~~~~~~~~~I~~la 189 (416)
T PRK00011 117 MDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALEH-----KPKLIIAG--ASAYSRPIDFKRFREIA 189 (416)
T ss_pred eccccCCccccccccccccceeeEeecCcCcccCCcCHHHHHHHHHhc-----CCCEEEEC--CCcCCCccCHHHHHHHH
Confidence 7778765321 11 2235677888887 46899999999999752 13244433 34678778999999999
Q ss_pred HhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 711 QEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 711 ~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
++||+++++|+||+.+......+...+. .+|.++.++||++..|.+..++
T Consensus 190 ~~~~~~livD~a~~~g~~~~g~~~~~~~---~~di~~~S~~K~l~g~~gg~i~ 239 (416)
T PRK00011 190 DEVGAYLMVDMAHIAGLVAAGVHPSPVP---HADVVTTTTHKTLRGPRGGLIL 239 (416)
T ss_pred HHcCCEEEEECcchhcccccCccCCCCC---CCcEEEecCCcCCCCCCceEEE
Confidence 9999999999998765443222122222 5699999999999777765543
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-10 Score=132.37 Aligned_cols=170 Identities=19% Similarity=0.129 Sum_probs=115.5
Q ss_pred chHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEec
Q psy13453 558 PACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTS 637 (764)
Q Consensus 558 p~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S 637 (764)
....++|..+.+..+++|+...... ...+=+.+|+.||+.++.+... +...|++.
T Consensus 76 ~~~d~lE~~~~~~~~~~f~~~~~~~------~~nv~~~SG~~AN~av~~aL~~-------------------pgD~Il~~ 130 (475)
T PLN03226 76 EYIDQIETLCQKRALEAFRLDPEKW------GVNVQPLSGSPANFAVYTALLQ-------------------PHDRIMGL 130 (475)
T ss_pred hhHHHHHHHHHHHHHHHhCCCccee------EEecCcCchHHHHHHHHHHhCC-------------------CCCEEEEC
Confidence 4668899999999999998865311 0011137889999887765411 12245542
Q ss_pred C------CcchhHHHHHHhCCCc--eEEE--ecC-CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHH
Q psy13453 638 D------QSNSSVEKSAIIGDVP--VRQL--RSD-DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEEL 706 (764)
Q Consensus 638 ~------~aH~Sv~kAa~~lGl~--v~~V--p~d-~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eI 706 (764)
+ .+|-+....+++.+.. +..+ +.+ ++|.+|+++|++.+.+. .|-+|++ |.+++|..-|+++|
T Consensus 131 d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~~-----~pklIv~--~~S~~s~~~D~a~i 203 (475)
T PLN03226 131 DLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAMLF-----RPKLIIA--GASAYPRDWDYARM 203 (475)
T ss_pred CCCcCcchhhhhhhcccccccceEEEEeeeeeecCCCCCcCHHHHHHHHhhc-----CCeEEEE--ecCcCCCccCHHHH
Confidence 2 4455554444433332 2222 334 67999999999998653 2434444 34568888899999
Q ss_pred HHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 707 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 707 a~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
+++|++||++|+||+||+.+++...-+... ++.+|.++.++||||+.|.| |++
T Consensus 204 ~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p---~~~~Div~~t~hK~L~GP~G-g~I 256 (475)
T PLN03226 204 RKIADKVGALLMCDMAHISGLVAAQEAASP---FEYCDVVTTTTHKSLRGPRG-GMI 256 (475)
T ss_pred HHHHHHcCCEEEEEchhhhCcccCCCCCCC---CCCCeEEEecCcccccCCCc-eEE
Confidence 999999999999999999988765432222 33679999999999988998 444
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.1e-10 Score=118.14 Aligned_cols=159 Identities=14% Similarity=0.147 Sum_probs=134.3
Q ss_pred HHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHH
Q psy13453 569 NWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSA 648 (764)
Q Consensus 569 ~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa 648 (764)
+.+++++|.+. .=+|.|+.++-+..|.+... +...+++...+||+-.-||
T Consensus 68 ~dlaeFlg~D~-----------~R~t~GARe~KfavMhal~~-------------------~gd~vV~D~~aHYttyvAA 117 (382)
T COG1103 68 EDLAEFLGMDE-----------VRVTAGAREAKFAVMHALCK-------------------EGDWVVVDSLAHYTTYVAA 117 (382)
T ss_pred HHHHHHhCCce-----------eeecccchhhHHHHHHHhcc-------------------CCCEEEEcCcchHHHHHHH
Confidence 34899999975 35899999998777653211 1235788999999999999
Q ss_pred HhCCCceEEEecC--CCCcccHHHHHHHHHHhhhcC-CCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccc
Q psy13453 649 IIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKG-LIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAG 725 (764)
Q Consensus 649 ~~lGl~v~~Vp~d--~~g~md~~~Le~~I~~~~~~G-~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg 725 (764)
...|++|..||-. .+++++++...+.|++-.++| ..|.+...|.....+|.+.|-..+++||++||++|.+.+||..
T Consensus 118 Eragl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~ 197 (382)
T COG1103 118 ERAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTV 197 (382)
T ss_pred HhcCCeEEecCCCCCCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceee
Confidence 9999999999964 678999999999999887776 7788999999999999999999999999999999999999988
Q ss_pred cccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 726 SALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 726 ~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
+-+...- +-+ .||.|.-|+||.|.+.-.||+|
T Consensus 198 Grmpvs~-----ke~-g~DFiVgSGHKsmAAs~PiGvl 229 (382)
T COG1103 198 GRMPVSG-----KEI-GADFIVGSGHKSMAASAPIGVL 229 (382)
T ss_pred ccccccc-----ccc-CCCEEEecCccchhccCCeeEE
Confidence 7554421 122 5899999999999999999986
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.6e-10 Score=125.99 Aligned_cols=170 Identities=18% Similarity=0.222 Sum_probs=135.6
Q ss_pred chHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEe-CChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEe
Q psy13453 558 PACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQ-STASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYT 636 (764)
Q Consensus 558 p~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfT-sGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~ 636 (764)
....+|-.++-+||+++-|++. ..++ ..|+++-++++++.|.....+ +...+-++++
T Consensus 105 qG~l~li~~Lq~~L~~ITG~Da-----------vsLQP~AGAqGE~aGll~Ir~YHe~r-----------G~~~R~~~LI 162 (496)
T COG1003 105 QGYLELIYELQEWLKEITGMDA-----------VSLQPNAGAQGEYAGLLAIRAYHESR-----------GEGHRNICLI 162 (496)
T ss_pred HHHHHHHHHHHHHHHHhcCCce-----------eeccCCCCcchhhHHHHHHHHHHHHc-----------CCCcCcEEEe
Confidence 3556788889999999999976 2343 467788899999888765433 1123557899
Q ss_pred cCCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc-cHHHHHHHHHhcCC
Q psy13453 637 SDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD-NLEELGPICQEYNI 715 (764)
Q Consensus 637 S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD-pl~eIa~i~~~~gl 715 (764)
.+.+|-...-+|.+.|++|+.|+||++|.+|+++|++++.++.+ ++.+|-.+| .|.|. +|.||++|.+++|-
T Consensus 163 P~SAHGTNPASAam~G~~VV~V~~~~~G~VDlddLk~k~~~~~A------alMiTnPsT-~GvFE~~I~ei~~ivH~~Gg 235 (496)
T COG1003 163 PDSAHGTNPASAAMAGFKVVVVKCDENGNVDLDDLRAKAEDNLA------ALMITNPST-LGVFEEDIREICEIVHEAGG 235 (496)
T ss_pred eccccCCChhhHhhcCceEEEEecCCCCCccHHHHHHHhcccee------EEEeccCcc-cccchhhHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999986644 888999988 58884 99999999999999
Q ss_pred EEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCce
Q psy13453 716 WLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCS 761 (764)
Q Consensus 716 wLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g 761 (764)
.+..|||---+.+ ...|.--- .+|-+-+|.||.+.+|.|-|
T Consensus 236 ~vY~DGANlNA~v--G~~rPGd~---G~DV~HlNLHKTF~iPHGGG 276 (496)
T COG1003 236 QVYYDGANLNAIV--GLARPGDM---GFDVVHLNLHKTFCIPHGGG 276 (496)
T ss_pred EEEecCcchhhhh--cccccccc---ccceEEeecccccccCCCCC
Confidence 9999998432211 11122112 45999999999999999866
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.9e-10 Score=124.95 Aligned_cols=220 Identities=10% Similarity=0.046 Sum_probs=150.7
Q ss_pred eHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCceec
Q psy13453 23 ESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKVG 97 (764)
Q Consensus 23 Sv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHVD 97 (764)
.+.++++..|... +.||+++++++|+++|+++|+++ +-+++-+.+++++|.+.|+++|++ ++|+|||
T Consensus 124 ~~~~~~~~~g~~~---~~v~~~~~~~~~~~~l~~~i~~~-----~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD 195 (403)
T TIGR01979 124 PWQLLAERTGATL---KFIPLDDDGTLDLDDLEKLLTEK-----TKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVD 195 (403)
T ss_pred HHHHHHHhcCcEE---EEEecCCCCCCCHHHHHHHhccC-----CeEEEEEcccccccccCCHHHHHHHHHHcCCEEEEE
Confidence 3568888999877 99999999999999999999753 224467888999999999999876 8899999
Q ss_pred ccc--------------------cccc----c-eeeeecCCCccccc--cccc------cccC--C-----cccC-CCCc
Q psy13453 98 GVL--------------------RRVY----S-SCLVPRGQKSLRTT--VLFH------FLFQ--H-----WQIP-LGRR 136 (764)
Q Consensus 98 a~l--------------------~~~y----~-s~ll~rd~~~l~~~--~s~~------~d~~--d-----~tle-~SRr 136 (764)
++. ++++ + ++++.+.. .+... +... ++.. . +.++ ++..
T Consensus 196 ~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~g~l~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~ 274 (403)
T TIGR01979 196 GAQAVPHMPVDVQALDCDFYVFSGHKMYGPTGIGVLYGKEE-LLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPN 274 (403)
T ss_pred chhhcCccccCccccCCCEEEEecccccCCCCceEEEEchH-HHhcCCCeecCCCceeecccCccccCCChhhcCCCCcc
Confidence 942 1111 1 34444322 11100 0000 0000 0 1122 2332
Q ss_pred c-cHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC----ceeEEEEeeccccccccccccCccCC
Q psy13453 137 F-RALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS----MGLVCFRLKVRFWDKLDNLFGTISFG 211 (764)
Q Consensus 137 ~-~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~----l~iV~Fry~P~~~~~~~~~~~~~~~~ 211 (764)
. ..+.++++++.+...|+.++.++..++++++.+.++++++++++.+++ .++++|++..
T Consensus 275 ~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~~~~~---------------- 338 (403)
T TIGR01979 275 IAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGEIPGLRIYGPRDAEDRGGIISFNVEG---------------- 338 (403)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCceEEEEeCC----------------
Confidence 2 345779999888877899999999999999999999999999987643 6799998631
Q ss_pred ccHHHHHHHHHHHhcCcEEEEec--------eeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 212 DNDLNKAVYDRIIARKVIYIVKG--------SFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 212 ~d~~n~~L~~~L~~~G~~~vs~t--------~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
.+ ...+.+.|.+.|...-... .+....++|+++ ...++++|++.+++.|+++.+.+
T Consensus 339 ~~--~~~~~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~iRiS~-~~~~t~~di~~l~~~l~~~~~~~ 402 (403)
T TIGR01979 339 VH--PHDVGTILDEEGIAVRSGHHCAQPLMRRFGVPATCRASF-YIYNTEEDIDALVEALKKVRKFF 402 (403)
T ss_pred cC--HHHHHHHHhhCCEEEcchhhhhHHHHHHhCCCCEEEEEe-ccCCCHHHHHHHHHHHHHHHHHh
Confidence 11 2356778888886443211 111235799974 46678999999999999877653
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.19 E-value=3e-10 Score=129.05 Aligned_cols=151 Identities=15% Similarity=0.085 Sum_probs=113.6
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
..|...++|+ .++++.|... .++|++||+|+.+++.+. .. +...|+
T Consensus 62 ~~p~~~~le~----~lA~l~g~~~-----------av~~sSGt~Al~~al~~l----l~---------------~Gd~Vi 107 (433)
T PRK08134 62 SNPTVAVLEE----RVAALEGGVG-----------AIATASGQAALHLAIATL----MG---------------AGSHIV 107 (433)
T ss_pred cChHHHHHHH----HHHHHhCCCc-----------EEEeCCHHHHHHHHHHHH----hC---------------CCCEEE
Confidence 4566666665 6677777532 589999999988877643 11 112578
Q ss_pred ecCCcchhHHHHH----HhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHH
Q psy13453 636 TSDQSNSSVEKSA----IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQ 711 (764)
Q Consensus 636 ~S~~aH~Sv~kAa----~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~ 711 (764)
++...|.+..... ...|+.++.++++ |+++|+++|++.+ -+|+....++.+|.+-||++|+++|+
T Consensus 108 ~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-----d~~~l~~~i~~~T------klV~~e~~~np~g~v~Di~~I~~la~ 176 (433)
T PRK08134 108 ASSALYGGSHNLLHYTLRRFGIETTFVKPG-----DIDGWRAAIRPNT------RLLFGETLGNPGLEVLDIPTVAAIAH 176 (433)
T ss_pred EeCCccHHHHHHHHHHHhhCCeEEEEECCC-----CHHHHHHhcCCCC------eEEEEECCCcccCcccCHHHHHHHHH
Confidence 8888887664443 3478888888875 7999999997653 37777778889999999999999999
Q ss_pred hcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCc
Q psy13453 712 EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNF 758 (764)
Q Consensus 712 ~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~ 758 (764)
++|++++||++|+.+....|. . - .||.++.|.|||++.+-
T Consensus 177 ~~gi~livD~t~a~~~~~~pl-~---~---GaD~vv~S~tK~l~g~g 216 (433)
T PRK08134 177 EAGVPLLVDSTFTTPYLLRPF-E---H---GADLVYHSATKFLGGHG 216 (433)
T ss_pred HcCCEEEEECCCcccccCCch-h---c---CCCEEEeccccccCCCC
Confidence 999999999999887654331 1 1 46999999999998654
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=9e-10 Score=126.05 Aligned_cols=173 Identities=19% Similarity=0.235 Sum_probs=119.6
Q ss_pred ccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCc
Q psy13453 552 FSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631 (764)
Q Consensus 552 ~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~ 631 (764)
..|..++...++++.+.+++ |.. ..++|+|||+|+..++.+. .. .++
T Consensus 72 ~~Y~~~~g~~~Lreaia~~~----~~~-----------~vv~t~ggt~A~~~~~~al----l~--------------pGD 118 (460)
T PRK13238 72 EAYAGSRSYYRLEDAVKDIF----GYP-----------YTIPTHQGRAAEQILFPVL----IK--------------KGD 118 (460)
T ss_pred cccCCCCCHHHHHHHHHHHh----CCC-----------cEEECCCHHHHHHHHHHHh----CC--------------CCC
Confidence 45777888888888655555 442 3699999999998876542 11 113
Q ss_pred eEEEecCCcchhHHHH-HHhCCCceEEEecCC--------C--CcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcc--
Q psy13453 632 LVAYTSDQSNSSVEKS-AIIGDVPVRQLRSDD--------N--GVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTC-- 698 (764)
Q Consensus 632 ~vi~~S~~aH~Sv~kA-a~~lGl~v~~Vp~d~--------~--g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~G-- 698 (764)
|+++ ..||....+ ....|..++.+|+++ . |.||+++|++.|.+... .++-+|+++..++.+|
T Consensus 119 --Vii~-~p~~~~~~~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~--~~tk~Ivl~~p~NptGG~ 193 (460)
T PRK13238 119 --VVPS-NYHFDTTRAHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGA--ENVPFIVMTITNNSAGGQ 193 (460)
T ss_pred --EEcc-CCcccchHHHHHHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhcCC--CceeEEEEecCCCCCCCc
Confidence 3444 447766555 567899999999863 2 44999999999975321 2355788888888887
Q ss_pred --ccccHHHHHHHHHhcCCEEEEeccccc-cccccch----hhh-hhcC-----CCcccEEEEcCCccCCCCcCceee
Q psy13453 699 --AFDNLEELGPICQEYNIWLHVDAAYAG-SALLLPE----YAH-LKRG-----LEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 699 --aiDpl~eIa~i~~~~glwLHVDaA~Gg-~~l~~~~----~r~-~l~g-----ie~aDSit~d~HK~l~~P~~~g~l 763 (764)
..+++++|+++|++||+|++.|+|+.. .+++..+ ++. .+.. .+.+|++++++||.+++|.| |++
T Consensus 194 v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~G-G~i 270 (460)
T PRK13238 194 PVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVNIG-GLL 270 (460)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCcce-eEE
Confidence 246789999999999999999998743 2333211 111 0111 24589999999999999986 554
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.8e-11 Score=130.45 Aligned_cols=192 Identities=11% Similarity=-0.035 Sum_probs=130.3
Q ss_pred ccCCCCChHHHHHHHHHHhh----cccCccccCC---chHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCC-hHH
Q psy13453 528 YFPTGSSYPSIVGDMLSGAF----GLIGFSWLSS---PACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQST-ASE 599 (764)
Q Consensus 528 ~~~~~~~~~~~lad~l~~~l----N~n~~~~~~s---p~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsG-gTe 599 (764)
|.+++...+.-+.+.+...+ |.....+..+ +.+.++-.++++.++++||.+++ ...+||+| ||+
T Consensus 3 ~~pGp~~~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~--------~~vvf~~gs~T~ 74 (355)
T cd00611 3 FSAGPAALPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDN--------YKVLFLQGGATG 74 (355)
T ss_pred CCCCCCCCCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCC--------ceEEEEcCCchH
Confidence 44555555555555555554 6666777777 67779999999999999998543 46789988 999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCCCCcc-c-HHHHHHHHHH
Q psy13453 600 ATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVL-R-GDALLTAVKE 677 (764)
Q Consensus 600 ANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~m-d-~~~Le~~I~~ 677 (764)
++-.++..- ... ..+..+|+++.-.|.+.. -++..|+.++.++++++|.. + ++..+..+.+
T Consensus 75 a~~~~~~~l----~~~------------~~~~~~i~~g~~~~~~~~-~a~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~ 137 (355)
T cd00611 75 QFAAVPLNL----LGD------------KGTADYVVTGAWSAKAAK-EAKRYGGVVVIVAAKEEGKYTKIPDVETWDLAP 137 (355)
T ss_pred HHHHHHHhc----CCC------------CCeEEEEECCHHHHHHHH-HHHhcCCCcEEEecccccCCCCCCCHhhcCCCC
Confidence 865554422 110 012346777777776633 44566899999998766543 5 3333333332
Q ss_pred hhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 678 DLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 678 ~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
+ +-+|+.|..+|.+|.. + .++++.||+.+.|||++..+....+--+ + |....+.||+++ |
T Consensus 138 ~------~~lV~~~h~~t~tG~~--~---~~i~~~~g~~~~VDa~qs~g~~~idv~~-----~---~~~~ss~~K~lG-P 197 (355)
T cd00611 138 D------AAYVHYCSNETIHGVE--F---DEVPDTGGVPLVADMSSNILSRPIDVSK-----F---GVIYAGAQKNLG-P 197 (355)
T ss_pred C------CCEEEEeCCcccccEE--c---ceecccCCCeEEEEccccccCCCCCHHH-----h---CEEEeecccccC-C
Confidence 2 3489999999999997 2 2456669999999999999887664211 2 434455999876 9
Q ss_pred cCceeeC
Q psy13453 758 FDCSAMW 764 (764)
Q Consensus 758 ~~~g~l~ 764 (764)
.|.|++|
T Consensus 198 ~G~g~l~ 204 (355)
T cd00611 198 AGVTVVI 204 (355)
T ss_pred CceEEEE
Confidence 9999985
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.4e-10 Score=122.94 Aligned_cols=157 Identities=17% Similarity=0.121 Sum_probs=114.5
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
.+|...++|+ .+++++|.+ ..++|+|||+|+.+++.+.. . .++-.|+
T Consensus 31 ~g~~~~~le~----~la~~~g~~-----------~~v~~~sgt~al~lal~al~---~---------------~~Gd~Vi 77 (379)
T PRK11658 31 TGPKNQALEQ----AFCQLTGNQ-----------HAIAVSSATAGMHITLMALG---I---------------GPGDEVI 77 (379)
T ss_pred CCHhHHHHHH----HHHHHhCCC-----------eEEEECCHHHHHHHHHHHcC---C---------------CCCCEEE
Confidence 3666667776 455666653 25889999999888776431 0 1123578
Q ss_pred ecCCcchhHHHHHHhCCCceEEEecCCC-CcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcC
Q psy13453 636 TSDQSNSSVEKSAIIGDVPVRQLRSDDN-GVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYN 714 (764)
Q Consensus 636 ~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~-g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~g 714 (764)
+++.+|.+...++...|+.++.+++|.+ +.+|+++|+++|.+.. -+|+. +..+|...|+++|+++|++||
T Consensus 78 v~~~~~~~~~~~~~~~G~~~v~vd~~~~~~~~d~~~l~~~i~~~t------kav~~---~~~~G~~~d~~~i~~~a~~~g 148 (379)
T PRK11658 78 TPSLTWVSTLNMIVLLGATPVMVDVDRDTLMVTPEAIEAAITPRT------KAIIP---VHYAGAPADLDAIRAIGERYG 148 (379)
T ss_pred ECCCcHHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhcccCC------eEEEE---eCCCCCcCCHHHHHHHHHHcC
Confidence 8999999999999999999999999854 5799999999986532 24443 334799999999999999999
Q ss_pred CEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCc
Q psy13453 715 IWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNF 758 (764)
Q Consensus 715 lwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~ 758 (764)
+++++|+||+.+.....+. + |-...+.++++.+|.+..+-
T Consensus 149 i~vi~D~a~a~g~~~~~~~---~-g~~g~~~~Sf~~~K~l~~g~ 188 (379)
T PRK11658 149 IPVIEDAAHAVGTYYKGRH---I-GARGTAIFSFHAIKNITCAE 188 (379)
T ss_pred CeEEEECCCccCCeECCee---c-CCCCCEEEeCCCCCcCcccC
Confidence 9999999998654432211 1 11123788899999886643
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-09 Score=122.08 Aligned_cols=220 Identities=12% Similarity=0.013 Sum_probs=153.6
Q ss_pred eeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCcee
Q psy13453 22 YESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKV 96 (764)
Q Consensus 22 YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHV 96 (764)
|.+.+.++..|... +.||++.++.+|+++++++|++++ -+++-+..+.++|.+-|+++|++ +++++|
T Consensus 124 ~~~~~~~~~~g~~v---~~v~~~~~~~~d~~~l~~~i~~~t-----~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~iv 195 (401)
T PRK10874 124 VPWLMVAQQTGAKV---VKLPLGADRLPDVDLLPELITPRT-----RILALGQMSNVTGGCPDLARAITLAHQAGMVVMV 195 (401)
T ss_pred HHHHHHHHHhCCEE---EEEecCCCCcCCHHHHHHhcCcCc-----EEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEE
Confidence 34677888899876 999999889999999999996532 24456888999999999999876 889999
Q ss_pred ccccc--------------------cc-c---c-eeeeecCCCccccc--ccc------ccccCCc-------ccC-CCC
Q psy13453 97 GGVLR--------------------RV-Y---S-SCLVPRGQKSLRTT--VLF------HFLFQHW-------QIP-LGR 135 (764)
Q Consensus 97 Da~l~--------------------~~-y---~-s~ll~rd~~~l~~~--~s~------~~d~~d~-------tle-~SR 135 (764)
|+... ++ | + ++++.+ ++.+... ... ..++.++ .++ |+.
T Consensus 196 D~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~ 274 (401)
T PRK10874 196 DGAQGAVHFPADVQALDIDFYAFSGHKLYGPTGIGVLYGK-SELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTP 274 (401)
T ss_pred ECCcccccccCCchhcCCCEEEEecccccCCCccEEEEEc-hHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCc
Confidence 99531 11 1 1 233332 2211110 000 0000011 111 222
Q ss_pred c-ccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccH
Q psy13453 136 R-FRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDND 214 (764)
Q Consensus 136 r-~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~ 214 (764)
. ...+.+.+++..+-..|+.+..++..++++++.+.|+++|+++++.+|..++++|++. +.+
T Consensus 275 ~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~i~~~~~~----------------~~~- 337 (401)
T PRK10874 275 NVAGVIGLSAALEWLADIDINQAESWSRSLATLAEDALAKLPGFRSFRCQDSSLLAFDFA----------------GVH- 337 (401)
T ss_pred CHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCcEEEEEEC----------------CcC-
Confidence 2 2556888999988888999999999999999999999999999998888899999752 111
Q ss_pred HHHHHHHHHHhcCcEEEEecee--------CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 215 LNKAVYDRIIARKVIYIVKGSF--------QDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 215 ~n~~L~~~L~~~G~~~vs~t~l--------~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
..++.+.|.++|..+.+.... ....++|+++... ++++|++.+++.|+++.+.
T Consensus 338 -~~~~~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~-nt~edid~ll~al~~~~~~ 398 (401)
T PRK10874 338 -HSDLVTLLAEYGIALRAGQHCAQPLLAALGVTGTLRASFAPY-NTQSDVDALVNAVDRALEL 398 (401)
T ss_pred -HHHHHHHHHHCCcEEeccccchHHHHHHhCCCCEEEEEeccc-CCHHHHHHHHHHHHHHHHH
Confidence 246778888888866554321 1235899987654 5899999999999987654
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-09 Score=121.74 Aligned_cols=168 Identities=14% Similarity=0.030 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCC
Q psy13453 560 CTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQ 639 (764)
Q Consensus 560 ~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~ 639 (764)
...+.+++.+++++++|.++ .+++++|++++..++.+. .. +...|++.+.
T Consensus 85 ~~~l~~~l~~~la~~~g~~~-----------~i~~tsG~~a~~~~~~~l----~~---------------~gd~vi~~~~ 134 (397)
T PRK06939 85 TQDLHKELEEKLAKFLGTED-----------AILYSSCFDANGGLFETL----LG---------------KEDAIISDAL 134 (397)
T ss_pred CcHHHHHHHHHHHHHhCCCc-----------EEEEcChHHHHHHHHHHh----CC---------------CCCEEEEEhh
Confidence 45667788899999998643 344444588877665432 11 1235788999
Q ss_pred cchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEE
Q psy13453 640 SNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHV 719 (764)
Q Consensus 640 aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHV 719 (764)
+|++...++...|.+++.++. +|+++|++.+++....+..+.+|+...-.+.+|...++++|+++|++||+|+++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~~~~~~li~ 209 (397)
T PRK06939 135 NHASIIDGVRLCKAKRYRYAN-----NDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMV 209 (397)
T ss_pred hhHHHHHHHHhcCCceEEeCC-----CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHHHHHHhCCEEEE
Confidence 999999999999988877764 589999999976443333466666555567789999999999999999999999
Q ss_pred ecccccccccc-chhhhhhcCC-CcccEEEEcCCccCCCCcCceee
Q psy13453 720 DAAYAGSALLL-PEYAHLKRGL-EYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 720 DaA~Gg~~l~~-~~~r~~l~gi-e~aDSit~d~HK~l~~P~~~g~l 763 (764)
|.+|+.+.+.. ........++ +.+|.++.++||+++.+ -.|++
T Consensus 210 De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g~-r~G~v 254 (397)
T PRK06939 210 DDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGA-SGGYT 254 (397)
T ss_pred ECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCcc-CceEE
Confidence 99996332211 1101112233 24688999999999644 34654
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.6e-09 Score=120.96 Aligned_cols=164 Identities=16% Similarity=0.170 Sum_probs=116.9
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
.++...++|+. +++++|.+. .++++|||+|+.+++.+.. . .++-.|+
T Consensus 27 ~g~~~~~le~~----la~~~g~~~-----------~v~~~sgt~al~~~l~al~---~---------------~~Gd~Vi 73 (380)
T TIGR03588 27 QGPTVPAFEEA----LAEYVGAKY-----------AVAFNSATSALHIACLALG---V---------------GPGDRVW 73 (380)
T ss_pred CChhHHHHHHH----HHHHHCCCe-----------EEEEcCHHHHHHHHHHHcC---C---------------CCCCEEE
Confidence 35555566654 566666532 4677889999877765431 0 1123588
Q ss_pred ecCCcchhHHHHHHhCCCceEEEecC-CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcC
Q psy13453 636 TSDQSNSSVEKSAIIGDVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYN 714 (764)
Q Consensus 636 ~S~~aH~Sv~kAa~~lGl~v~~Vp~d-~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~g 714 (764)
++..+|.+...++...|+.++.++++ +++.+|+++|+++|++.. ...+-+|+.+ +.+|...|+++|+++|++||
T Consensus 74 v~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~~--~~~t~~v~~~---~~~G~~~~~~~i~~l~~~~~ 148 (380)
T TIGR03588 74 TTPITFVATANCALYCGAKVDFVDIDPDTGNIDEDALEKKLAAAK--GKLPKAIVPV---DFAGKSVDMQAIAALAKKHG 148 (380)
T ss_pred eCCcchHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHhhccc--CCCceEEEEe---CCCCccCCHHHHHHHHHHcC
Confidence 89999999999999999999999997 468899999999997431 1123355443 34788899999999999999
Q ss_pred CEEEEeccccccccccchhhhhhcCCCcccEEEEcCC--ccCCCCcCc
Q psy13453 715 IWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTH--KWLLVNFDC 760 (764)
Q Consensus 715 lwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~H--K~l~~P~~~ 760 (764)
+++++|+||+.+..+-. +. +...+.+|..++++| ||+..+-|.
T Consensus 149 ~~lI~D~a~a~g~~~~~--~~-~g~~~~~d~~~~S~~~~K~~~~~~GG 193 (380)
T TIGR03588 149 LKIIEDASHALGAEYGG--KP-VGNCRYADATVFSFHPVKIITTAEGG 193 (380)
T ss_pred CEEEEECCCcccCccCC--Ee-CCCccccceEEEecCCCCcccccCce
Confidence 99999999987654321 11 111124699999999 999877543
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.8e-10 Score=124.34 Aligned_cols=167 Identities=18% Similarity=0.099 Sum_probs=117.6
Q ss_pred CchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEe
Q psy13453 557 SPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYT 636 (764)
Q Consensus 557 sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~ 636 (764)
.|...++|+.+.+.+++++|.+. .-+++++||.||+.++.+. .. +...|++
T Consensus 69 ~~~~~~lE~~~~~~la~l~g~~~----------alv~~~SG~~A~~~~l~al----~~---------------~GD~Vl~ 119 (416)
T PRK13034 69 CEFVDEVEALAIERAKQLFGCDY----------ANVQPHSGSQANGAVYLAL----LK---------------PGDTILG 119 (416)
T ss_pred ChHHHHHHHHHHHHHHHHhCCCc----------eEEecCCcHHHHHHHHHHh----cC---------------CCCEEEE
Confidence 47788999989999999998753 2255789999999887643 11 1236888
Q ss_pred cCCcchhH-HHHHHh--CCCce--EEEecC-CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHH
Q psy13453 637 SDQSNSSV-EKSAII--GDVPV--RQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPIC 710 (764)
Q Consensus 637 S~~aH~Sv-~kAa~~--lGl~v--~~Vp~d-~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~ 710 (764)
+...|.+. ...++. .+..+ +..+.+ ..+.+|+++|++.++.. .|-+|+. +++.+|..-|+++|.++|
T Consensus 120 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~-----~~klVi~--~~~~~g~~~dl~~l~~la 192 (416)
T PRK13034 120 MSLSHGGHLTHGAKVSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKEH-----KPKLIIA--GFSAYPRELDFARFREIA 192 (416)
T ss_pred cCccceeeeecCCcceeccceeeeEEcccccccCCcCHHHHHHHHhhc-----CCeEEEE--CCCccccccCHHHHHHHH
Confidence 99999873 322322 12222 233343 35679999999998642 2435543 234578888999999999
Q ss_pred HhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCcee
Q psy13453 711 QEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSA 762 (764)
Q Consensus 711 ~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~ 762 (764)
++||++++||+|++.+....+.+. ..+..+|.++.++|||+..|.|..+
T Consensus 193 ~~~g~~livD~Aha~G~~~~g~~~---~~~~~~Di~~~s~~K~l~g~~GG~v 241 (416)
T PRK13034 193 DEVGALLMVDMAHIAGLVAAGEHP---NPFPHAHVVTTTTHKTLRGPRGGMI 241 (416)
T ss_pred HHcCCEEEEeCcccccCcccCCCC---CCCCCceEEEEeCcccCCCCCCeEE
Confidence 999999999999998776654322 2334689999999999988887443
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=9e-10 Score=130.01 Aligned_cols=167 Identities=16% Similarity=0.154 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcch
Q psy13453 563 LEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNS 642 (764)
Q Consensus 563 lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~ 642 (764)
.-.++-+..|++||.+.+| ++|.|.|.+|..++.++.. +.-.|++...+|-
T Consensus 196 ~i~eAe~~aA~~fgAd~ty----------fvvNGTS~~n~av~~a~~~-------------------~Gd~VLvdRN~HK 246 (713)
T PRK15399 196 PHLEAEEYIARTFGAEQSY----------IVTNGTSTSNKIVGMYAAP-------------------AGSTLLIDRNCHK 246 (713)
T ss_pred HHHHHHHHHHHHhCCCcEE----------EEeCChHHHHHHHHHHhcC-------------------CCCEEEeecccHH
Confidence 3445566789999998864 4778888889887775421 1236889999999
Q ss_pred hHHHHHHhCCCceEEEecCC-----CCcccH-----HHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHh
Q psy13453 643 SVEKSAIIGDVPVRQLRSDD-----NGVLRG-----DALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQE 712 (764)
Q Consensus 643 Sv~kAa~~lGl~v~~Vp~d~-----~g~md~-----~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~ 712 (764)
|+..++.+.|+..+.+++.- -|-|++ +.++++|++.... ++|..+++|.+ |..|.+-|+++|+++|
T Consensus 247 Sv~~aLilsga~PVYl~P~~n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~-~~p~~vvit~p-TYdGi~yd~~~I~~~~-- 322 (713)
T PRK15399 247 SLAHLLMMSDVVPIWLKPTRNALGILGGIPRREFTRDSIEEKVAATTQA-QWPVHAVITNS-TYDGLLYNTDWIKQTL-- 322 (713)
T ss_pred HHHHHHHHcCCeeEEecccccccCCcCCCChhhccHHHHHHHHHhCCCc-CCceEEEEECC-CCCceeeCHHHHHHHh--
Confidence 99999999999888887642 234555 9999999876533 46888999998 5579999999999999
Q ss_pred cCCEE-EEeccccccccccchhhh--hhcCCCcccEE---EEcCCccCCCCcCceee
Q psy13453 713 YNIWL-HVDAAYAGSALLLPEYAH--LKRGLEYVDSF---DFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 713 ~glwL-HVDaA~Gg~~l~~~~~r~--~l~gie~aDSi---t~d~HK~l~~P~~~g~l 763 (764)
|+.+ |||-|||+.+.|.|.++. -+.+...+|.+ +-|.||.|.+-.++|.+
T Consensus 323 -g~~~ilvDEAhgah~~F~p~~~~~sam~~~~~aD~~i~~tQStHKtL~alTQaS~i 378 (713)
T PRK15399 323 -DVPSIHFDSAWVPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKMLAAFSQASLI 378 (713)
T ss_pred -CCCEEEEeccchhhhhcCcccCCcChhhCCCCCCeeeeeeeehhccccccchheee
Confidence 6665 999999999988886552 23333357888 99999999988777765
|
|
| >KOG0630|consensus | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-10 Score=127.10 Aligned_cols=196 Identities=19% Similarity=0.201 Sum_probs=137.0
Q ss_pred hHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecC
Q psy13453 559 ACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSD 638 (764)
Q Consensus 559 ~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~ 638 (764)
.++-+--.+-.|+..||.+..+..+++.. ...|...-..++..+++.|.....+.... -.++........+++|+|+
T Consensus 162 ian~i~Gdanh~fgnLF~FAdsqiycsdP--aasfhadiadai~haVkLAikar~~~dhs-~eG~~afaa~aaPt~YiS~ 238 (838)
T KOG0630|consen 162 IANSISGDANHVFGNLFHFADSQIYCSDP--AASFHADIADAIGHAVKLAIKARCGGDHS-LEGGIAFAALAAPTFYISE 238 (838)
T ss_pred HHHhhccchHHHHHHHHhhcccccccCCc--hhhhhhhhhhHHHHHHHhhhhhccCCccc-cccccchHhhcCceEEEcc
Confidence 44445556778999999987653333222 23455555556666777666544332100 0111111123467899999
Q ss_pred CcchhH-HHHHHhCCCceEEEec--C-----CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHH
Q psy13453 639 QSNSSV-EKSAIIGDVPVRQLRS--D-----DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPIC 710 (764)
Q Consensus 639 ~aH~Sv-~kAa~~lGl~v~~Vp~--d-----~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~ 710 (764)
..|.-. ..+|+-+|+....|.+ | -.|+||...+++.|++|..+|++|+++++..|++..|..|.|.+|.+||
T Consensus 239 alh~~l~hYaarefGIa~~aI~~~~dhdqgeiegriDhh~feKiideDlaagkkPLilia~iGasi~GqnDmi~kildi~ 318 (838)
T KOG0630|consen 239 ALHMDLLHYAAREFGIADEAIKPILDHDQGEIEGRIDHHLFEKIIDEDLAAGKKPLILIADIGASICGQNDMILKILDIC 318 (838)
T ss_pred cccHHHHHHHHHHhCCchhheecccccccccccccccHHHHHHHHHHHHhCCCCCeEEEEeccchhhcchHHHHHHHHHH
Confidence 999765 4568889994332222 2 2579999999999999999999999999999999999999999999999
Q ss_pred HhcC-CEEEEeccccccccccchhh-hhhcCCCcccEEEEcCCccCCCCc
Q psy13453 711 QEYN-IWLHVDAAYAGSALLLPEYA-HLKRGLEYVDSFDFNTHKWLLVNF 758 (764)
Q Consensus 711 ~~~g-lwLHVDaA~Gg~~l~~~~~r-~~l~gie~aDSit~d~HK~l~~P~ 758 (764)
++++ +|||.-| +|..++.|.+-. .+..-.+..||++++.--||++|-
T Consensus 319 eahakfWLHasG-haiAALt~aepnnil~HV~eqldSMal~ialWLGiPS 367 (838)
T KOG0630|consen 319 EAHAKFWLHASG-HAIAALTCAEPNNILGHVEEQLDSMALNIALWLGIPS 367 (838)
T ss_pred HHhhheeEeecc-chhhheeecCcccchhHHHHHHhhccchhHHHhCCCC
Confidence 9997 9999988 566666664422 111223567999999999999984
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.9e-09 Score=121.67 Aligned_cols=156 Identities=13% Similarity=0.062 Sum_probs=108.0
Q ss_pred HHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchh--
Q psy13453 566 LVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSS-- 643 (764)
Q Consensus 566 ~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~S-- 643 (764)
.+.+.+++++|.+. .+++++|+.|++.++.+. .. +-.|++|+.+|++
T Consensus 131 ~~e~~lA~l~Gae~-----------a~vv~sgtaAl~l~l~~l-----~~---------------GdeVIvs~~e~~~~g 179 (464)
T PRK04311 131 ALAALLCALTGAED-----------ALVVNNNAAAVLLALNAL-----AA---------------GKEVIVSRGELVEIG 179 (464)
T ss_pred HHHHHHHHHhCCCe-----------EEEECCHHHHHHHHHHHh-----CC---------------CCEEEEcchhhhhcC
Confidence 56778899998743 578888998887766421 11 1247788877773
Q ss_pred ----HHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCC--cc--ccccHHHHHHHHHhcCC
Q psy13453 644 ----VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTG--TC--AFDNLEELGPICQEYNI 715 (764)
Q Consensus 644 ----v~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~--~G--aiDpl~eIa~i~~~~gl 715 (764)
+...+...|+.++.|+++ +..++++++++|.++++ +|+.+..++. +| ..-|+++|+++|++||+
T Consensus 180 gs~~i~~~~~~~G~~l~~v~~~--~~t~~~dle~aI~~~Tk------lV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi 251 (464)
T PRK04311 180 GAFRIPDVMRQAGARLVEVGTT--NRTHLRDYEQAINENTA------LLLKVHTSNYRIEGFTKEVSLAELAALGKEHGL 251 (464)
T ss_pred cchhhHHHHHHCCcEEEEECCC--CCCCHHHHHHhcCccCe------EEEEEcCCCccccccCCcCCHHHHHHHHHHcCC
Confidence 334556678888888764 45689999999976533 5655555553 44 56699999999999999
Q ss_pred EEEEeccccccc----c---ccchhhh-hhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 716 WLHVDAAYAGSA----L---LLPEYAH-LKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 716 wLHVDaA~Gg~~----l---~~~~~r~-~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
+++||++.|... . ..|.... .-. .||.+++++|||++.|. +|+++
T Consensus 252 ~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~---GaDiv~fSg~K~LgGp~-~G~i~ 304 (464)
T PRK04311 252 PVVYDLGSGSLVDLSQYGLPDEPTVQELLAA---GVDLVTFSGDKLLGGPQ-AGIIV 304 (464)
T ss_pred eEEEECCCcccccchhccCCCCCchhhHHhc---CCcEEEecCcccccCCc-eEEEE
Confidence 999999755421 0 0111111 112 46999999999999995 78764
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.3e-09 Score=120.91 Aligned_cols=158 Identities=13% Similarity=0.043 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcch-
Q psy13453 564 EVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNS- 642 (764)
Q Consensus 564 E~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~- 642 (764)
-..+.+.+++++|.+. .+++++|+.|++.++.+ +.. +-.|++|+..|.
T Consensus 124 ~~~le~~lA~l~gae~-----------alvv~sg~aAi~l~l~~-----l~~---------------GdeVIvs~~e~v~ 172 (454)
T TIGR00474 124 YSHVEGLLCELTGAED-----------ALVVNNNAAAVLLALNT-----LAK---------------GKEVIVSRGELVE 172 (454)
T ss_pred HHHHHHHHHHHhCCCc-----------EEEECCHHHHHHHHHHH-----hCC---------------cCEEEECCChhhh
Confidence 3557788999998754 46778888888777632 111 124778877663
Q ss_pred -----hHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCC--cc--ccccHHHHHHHHHhc
Q psy13453 643 -----SVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTG--TC--AFDNLEELGPICQEY 713 (764)
Q Consensus 643 -----Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~--~G--aiDpl~eIa~i~~~~ 713 (764)
++...+...|+.++.++++ +..++++++++|.++++ +|+.+.-++. .| .+-|+++|+++|++|
T Consensus 173 ~ggs~~i~~~~~~~G~~~~~v~~~--~~~~l~dle~aI~~~T~------lv~~~h~sN~~~~G~~~~~dl~~I~~la~~~ 244 (454)
T TIGR00474 173 IGGSFRIPDVMEQSGAKLVEVGTT--NRTHLKDYEDAITENTA------LLLKVHTSNYRIVGFTEEVSIAELVALGREH 244 (454)
T ss_pred hcchhhHHHHHHHcCCEEEEeCCC--CCCCHHHHHHhcCcCCE------EEEEEccCcccccCCCCCCCHHHHHHHHHHc
Confidence 3445566789988888764 45689999999976533 5555555554 35 477999999999999
Q ss_pred CCEEEEecccccccc-------ccchh-hhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 714 NIWLHVDAAYAGSAL-------LLPEY-AHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 714 glwLHVDaA~Gg~~l-------~~~~~-r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
|++++||++.|...- -.|.. +..-. .||-+++++|||++.|. +|+++
T Consensus 245 g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~---GaDiv~fSg~K~LgGp~-~G~i~ 299 (454)
T TIGR00474 245 GLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAA---GVDLVTFSGDKLLGGPQ-AGIIV 299 (454)
T ss_pred CCeEEEECCCcccccchhccCCCCcccccHhHc---CCCEEEecCccccCCCe-EEEEE
Confidence 999999987554200 01111 11112 46999999999999895 67764
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.4e-09 Score=118.63 Aligned_cols=219 Identities=8% Similarity=0.003 Sum_probs=148.8
Q ss_pred eeeeH----HHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----
Q psy13453 20 LIYES----FKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS----- 90 (764)
Q Consensus 20 ~~YSv----~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~----- 90 (764)
.|+|+ .+.++..|+.. +.||+++++.+|+++|++++++. +-+++.+.+++++|.+.|+++|.+
T Consensus 95 ~~~~~~~~~~~~~~~~g~~~---~~v~~~~~~~~d~~~l~~~~~~~-----~~~v~~~~~~n~tG~~~~~~~i~~l~~~~ 166 (376)
T TIGR01977 95 EHNSVARPLECLKEQIGVEI---TIVKCDNEGLISPERIKRAIKTN-----TKLIVVSHASNVTGTILPIEEIGELAQEN 166 (376)
T ss_pred hhhHHHHHHHHHHHHcCcEE---EEEecCCCCCcCHHHHHHhcCCC-----CeEEEEECCCCCccccCCHHHHHHHHHHc
Confidence 45554 35667778876 89999988999999999999642 224467889999999999999876
Q ss_pred CCCceecccc--------------------ccc-----cc-eeeeecCCCcccccccccc----ccCCc------ccC-C
Q psy13453 91 NGPLKVGGVL--------------------RRV-----YS-SCLVPRGQKSLRTTVLFHF----LFQHW------QIP-L 133 (764)
Q Consensus 91 ~~wlHVDa~l--------------------~~~-----y~-s~ll~rd~~~l~~~~s~~~----d~~d~------tle-~ 133 (764)
+++++||++. .++ .+ +.+++++...+........ .+.+. .++ +
T Consensus 167 ~~~livD~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 246 (376)
T TIGR01977 167 GIFFILDAAQTAGVIPIDMTELAIDMLAFTGHKGLLGPQGTGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESG 246 (376)
T ss_pred CCEEEEEhhhccCccCCCchhcCCCEEEecccccccCCCCceEEEEcCCcCcCceecCCCccccccccccccchhhccCC
Confidence 8899999943 122 11 3455555432221111000 00000 011 1
Q ss_pred CC-cccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC----CceeEEEEeeccccccccccccCc
Q psy13453 134 GR-RFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPP----SMGLVCFRLKVRFWDKLDNLFGTI 208 (764)
Q Consensus 134 SR-r~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P----~l~iV~Fry~P~~~~~~~~~~~~~ 208 (764)
+. -...+.++.+++.+...|+.++.++..++++++.+.|++.++++++.+. ..++++|+..
T Consensus 247 t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~-------------- 312 (376)
T TIGR01977 247 TLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTVE-------------- 312 (376)
T ss_pred CCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEEC--------------
Confidence 22 2234578899999999999999999999999999999999999998752 3678889762
Q ss_pred cCCccHHHHHHHHHHHhc-CcEEEEece----------eCCeeEEEEeccCCCCCHHHHHHHHHHHHH
Q psy13453 209 SFGDNDLNKAVYDRIIAR-KVIYIVKGS----------FQDRLFMRFAICSSQTEESDVQLGWNEIRT 265 (764)
Q Consensus 209 ~~~~d~~n~~L~~~L~~~-G~~~vs~t~----------l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~ 265 (764)
+.+ -..+.+.|.++ |...-.... ......+|++ ++..++.+|++.+++.|++
T Consensus 313 --~~~--~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis-~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 313 --GID--SEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLS-LGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred --CCC--HHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEe-cCCCCCHHHHHHHHHHHhh
Confidence 111 14677888776 653322110 1123589997 6788999999999999875
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-09 Score=120.76 Aligned_cols=193 Identities=13% Similarity=0.062 Sum_probs=130.8
Q ss_pred HHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhcc
Q psy13453 539 VGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQS 618 (764)
Q Consensus 539 lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~ 618 (764)
+.+.+...+......|..+.....+.+.+.+|+.+.+|.+-+ ....++|+|+++++..++.+...
T Consensus 42 ~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~-------~~~i~~t~g~~~al~~~~~~l~~-------- 106 (382)
T PRK06108 42 IRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATP-------PERIAVTSSGVQALMLAAQALVG-------- 106 (382)
T ss_pred HHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcC-------cceEEEeCChHHHHHHHHHHhcC--------
Confidence 344444444333333555566778889999999998884321 13578899999987766654311
Q ss_pred CCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCC---CCcccHHHHHHHHHHhhhcCCCceEEEEeeccC
Q psy13453 619 KNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDD---NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTT 695 (764)
Q Consensus 619 ~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~---~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT 695 (764)
++-.|++..-+|.....++...|++++.+|.+. ++.+|+++|++.+.+. +-+|+.+..++
T Consensus 107 -----------~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~------~~~i~l~~p~N 169 (382)
T PRK06108 107 -----------PGDEVVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITPR------TRALFINSPNN 169 (382)
T ss_pred -----------CCCEEEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcCcc------ceEEEEECCCC
Confidence 112466777889888899999999999999963 4579999999988542 33667778889
Q ss_pred Ccccc---ccHHHHHHHHHhcCCEEEEeccccccccc-cchhhh--hhcCCCcccEEEEcCCccCCC-CcCceee
Q psy13453 696 GTCAF---DNLEELGPICQEYNIWLHVDAAYAGSALL-LPEYAH--LKRGLEYVDSFDFNTHKWLLV-NFDCSAM 763 (764)
Q Consensus 696 ~~Gai---Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~-~~~~r~--~l~gie~aDSit~d~HK~l~~-P~~~g~l 763 (764)
.+|.+ +++++|+++|+++|+|+++|.+|+.+..- -..... .+.....-.-+..+++|.++. .+.+|.+
T Consensus 170 PtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~ 244 (382)
T PRK06108 170 PTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWL 244 (382)
T ss_pred CCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcccceeee
Confidence 99966 46788999999999999999999876432 001000 011111123557799998764 3456765
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.6e-10 Score=127.64 Aligned_cols=191 Identities=15% Similarity=0.094 Sum_probs=122.0
Q ss_pred cCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHH-----hhhhccC------CCCC
Q psy13453 555 LSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKM-----INHWQSK------NPSL 623 (764)
Q Consensus 555 ~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~-----~~~~~~~------~~~~ 623 (764)
.......++|..+++...++||..-. -+=.-+||.||+.+..+..... +.+.+.+ ..+|
T Consensus 88 ~g~~~~d~ie~l~~~ra~~lf~a~~a----------nvqp~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~ 157 (493)
T PRK13580 88 AGCQNVDTVEWEAAEHAKELFGAEHA----------YVQPHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDW 157 (493)
T ss_pred CCCchHHHHHHHHHHHHHHHhCCCcc----------cccCCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhh
Confidence 34556778999999999999987531 2333578899988877665320 0000000 0000
Q ss_pred ccc--cccCceEE--EecCCcchhHHHHHHhCCC--ceEEEecC-CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCC
Q psy13453 624 TEN--DIRNKLVA--YTSDQSNSSVEKSAIIGDV--PVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTG 696 (764)
Q Consensus 624 ~~~--~~~~~~vi--~~S~~aH~Sv~kAa~~lGl--~v~~Vp~d-~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~ 696 (764)
... ....+-++ =.+.-.|.+.-....+.|. .++.-++| ++|.+|.+++++.+.+.+ | .|+.+..++.
T Consensus 158 ~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd~~~g~iD~d~l~~~~~~~~-----p-lvii~g~S~~ 231 (493)
T PRK13580 158 EALRAELGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPDTGLLDYDEIAALAREFK-----P-LILVAGYSAY 231 (493)
T ss_pred hhhhccCCCCEEEeecCCCCCeeecCcccchhhheeeeEecccCcccCccCHHHHHHHHhhcC-----C-EEEEeCcccc
Confidence 000 00001111 1233344444333344453 55666676 579999999999997653 4 5555666666
Q ss_pred ccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 697 TCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 697 ~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
+.+-|+++|++||++||++|+||+||+.+.+...-+......+..+|.++.++||+|+.|.| |++
T Consensus 232 -~~~~dl~~i~eia~~~gA~L~VD~AH~~Gligg~~~~~~~~~~~~~D~vtgT~hKaL~GP~G-G~I 296 (493)
T PRK13580 232 -PRRVNFAKLREIADEVGAVLMVDMAHFAGLVAGKVFTGDEDPVPHADIVTTTTHKTLRGPRG-GLV 296 (493)
T ss_pred -CCCcCHHHHHHHHHHcCCEEEEECchhhceeccccchhhcCCCCCCcEEEeCChhhccCCCe-EEE
Confidence 55779999999999999999999999998876443332223345789999999999988986 544
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.3e-09 Score=119.77 Aligned_cols=194 Identities=15% Similarity=0.068 Sum_probs=132.8
Q ss_pred HHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhc
Q psy13453 538 IVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQ 617 (764)
Q Consensus 538 ~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~ 617 (764)
.+.+.+...++.....|........+++.+.+|+.+..|..-+ ....++|+|+++++..++.+...
T Consensus 48 ~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~-------~~~i~~~~g~~~a~~~~~~~~~~------- 113 (393)
T PRK05764 48 HIKEAAIEALDDGKTKYTPAAGIPELREAIAAKLKRDNGLDYD-------PSQVIVTTGAKQALYNAFMALLD------- 113 (393)
T ss_pred HHHHHHHHHHhcCCCCcCCCCChHHHHHHHHHHHHHHhCCCCC-------HHHEEEeCCcHHHHHHHHHHhcC-------
Confidence 4445555555443444655566788888888888877664221 13578999999998776654311
Q ss_pred cCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCC--CCcccHHHHHHHHHHhhhcCCCceEEEEeeccC
Q psy13453 618 SKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTT 695 (764)
Q Consensus 618 ~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~--~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT 695 (764)
++..|++++-+|.....+++..|++++.+|.+. .+.+|+++|++++++. +-+|+++..++
T Consensus 114 ------------~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~N 175 (393)
T PRK05764 114 ------------PGDEVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAITPK------TKALILNSPSN 175 (393)
T ss_pred ------------CCCEEEecCCCCcchHHHHHHcCCEEEEEecCcccCCcCCHHHHHHhhCcc------ceEEEEECCCC
Confidence 112477888889999999999999999999973 4689999999988543 23666777888
Q ss_pred Ccccc---ccHHHHHHHHHhcCCEEEEeccccccccccch---hhhhhcCCCcccEEEEcCCccCCCCc-Cceee
Q psy13453 696 GTCAF---DNLEELGPICQEYNIWLHVDAAYAGSALLLPE---YAHLKRGLEYVDSFDFNTHKWLLVNF-DCSAM 763 (764)
Q Consensus 696 ~~Gai---Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~---~r~~l~gie~aDSit~d~HK~l~~P~-~~g~l 763 (764)
.+|.+ +++++|.++|++||+|+++|.+|+....--.. ......+...-+-+..++.|.++.|- -+|.+
T Consensus 176 PtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~i 250 (393)
T PRK05764 176 PTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRLGYA 250 (393)
T ss_pred CCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCccceeEEE
Confidence 89987 57899999999999999999999864321111 11111222223456678899987552 24543
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1e-09 Score=129.68 Aligned_cols=166 Identities=15% Similarity=0.139 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcch
Q psy13453 563 LEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNS 642 (764)
Q Consensus 563 lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~ 642 (764)
.-.++-+..|++||.+.+| +.|.|.|.+|..++.++.. ++-.|++...+|-
T Consensus 196 ~i~eAe~~AA~~fgAd~ty----------fvvNGTS~~n~av~~a~~~-------------------~Gd~VLvdRN~HK 246 (714)
T PRK15400 196 PHKEAEEYIARVFNADRSY----------MVTNGTSTANKIVGMYSAP-------------------AGSTVLIDRNCHK 246 (714)
T ss_pred HHHHHHHHHHHHhCCCcEE----------EEeCchHHHHHHHHHHhcC-------------------CCCEEEeecccHH
Confidence 3455667889999998864 4678888888877765421 1236889999999
Q ss_pred hHHHHHHhCCCceEEEecCC--C---Cccc-----HHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHh
Q psy13453 643 SVEKSAIIGDVPVRQLRSDD--N---GVLR-----GDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQE 712 (764)
Q Consensus 643 Sv~kAa~~lGl~v~~Vp~d~--~---g~md-----~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~ 712 (764)
|+..|+.+.|+..+.++++- . |-|+ ++.++++|++.... +.|+.+++|.+ |..|.+-|+++|+++|+.
T Consensus 247 Sv~haLilsga~PVYl~P~rn~~Gi~g~I~~~~~~~e~i~~~i~~~p~a-k~p~~~vit~p-TYdG~~yd~~~I~~~~~~ 324 (714)
T PRK15400 247 SLTHLMMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNA-TWPVHAVITNS-TYDGLLYNTDFIKKTLDV 324 (714)
T ss_pred HHHHHHHHcCCeEEEecccccccCCccCCCccccCHHHHHHHHHhCccc-cCccEEEEECC-CCccEecCHHHHHHHhCC
Confidence 99999999999888887652 1 2345 89999999876533 46888999998 557999999999999998
Q ss_pred cCCEEEEeccccccccccchhhhhhcCC-Ccc---c--EEEEcCCccCCCCcCcee
Q psy13453 713 YNIWLHVDAAYAGSALLLPEYAHLKRGL-EYV---D--SFDFNTHKWLLVNFDCSA 762 (764)
Q Consensus 713 ~glwLHVDaA~Gg~~l~~~~~r~~l~gi-e~a---D--Sit~d~HK~l~~P~~~g~ 762 (764)
++ +|||-|||+.+.|.|.++.. .++ ..| | -++-|.||.|.+-.++|.
T Consensus 325 ~~--ilvDEAwgah~~F~p~~~~~-sam~~ga~~~~~i~vtQStHKtL~alTQaS~ 377 (714)
T PRK15400 325 KS--IHFDSAWVPYTNFSPIYEGK-CGMSGGRVEGKVIYETQSTHKLLAAFSQASM 377 (714)
T ss_pred CC--EEEEccchhhhccCcccCCc-ChhhcCCCCCCceEEEEchhhcccchhHHhH
Confidence 87 79999999999888876421 112 234 4 899999999987666554
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.7e-09 Score=120.90 Aligned_cols=150 Identities=15% Similarity=0.105 Sum_probs=109.5
Q ss_pred HHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhH
Q psy13453 565 VLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV 644 (764)
Q Consensus 565 ~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv 644 (764)
.++.+.+++++|.+ ..+++++|+.++..++. ... ++..|+++...|.+.
T Consensus 50 ~~le~~la~l~g~~-----------~~l~~~sG~~al~~~l~-----ll~---------------~Gd~Vl~~~~~y~~~ 98 (378)
T TIGR01329 50 TALESLLAKLDKAD-----------RAFAFSSGMAALDVITR-----LLN---------------NGDEIIAGDDLYGGT 98 (378)
T ss_pred HHHHHHHHHHhCCC-----------cEEEECCHHHHHHHHHH-----HhC---------------CCCEEEEcCCCchHH
Confidence 44556788888874 25777778766543221 111 112477788888776
Q ss_pred HH----HHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEe
Q psy13453 645 EK----SAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVD 720 (764)
Q Consensus 645 ~k----Aa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVD 720 (764)
.+ .+...|++++.++++ |+++++++|++. +-+|+.+..++.+|.+-|+++|+++|++||++++||
T Consensus 99 ~~~~~~~~~~~G~~v~~vd~~-----d~~~le~~i~~~------tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD 167 (378)
T TIGR01329 99 DRLLTQVVPRSGVVVVHVDTT-----DLDKVKAALGPK------TKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVD 167 (378)
T ss_pred HHHHHHHHHHcCcEEEEeCCC-----CHHHHHHhcCcC------ceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEE
Confidence 54 345579999988864 789999988643 448888889999999999999999999999999999
Q ss_pred ccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcC--ceee
Q psy13453 721 AAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD--CSAM 763 (764)
Q Consensus 721 aA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~--~g~l 763 (764)
+||+......+ .. . .+|.+..++|||++.|.+ .|++
T Consensus 168 ~a~~~~~~~~~-l~-----~-g~Di~v~S~tK~l~G~~~~~~G~v 205 (378)
T TIGR01329 168 NTMMSPLLCNP-LE-----L-GADIVYHSATKFLAGHSDVMAGVL 205 (378)
T ss_pred CCCcccccCCh-hh-----c-CCcEEEEecceeccCCccceeEEE
Confidence 99976543222 11 1 469999999999998876 6765
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.1e-09 Score=128.91 Aligned_cols=232 Identities=10% Similarity=-0.034 Sum_probs=153.9
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCc
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPL 94 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wl 94 (764)
.|.|+.+.+.+.|++. +.||+|++|++|+++|+++|++.+. ++-+++.|.++|..|.+|||.+|++ ++.+
T Consensus 625 aH~sn~a~a~~~G~~v---v~v~~d~~G~vDle~L~~~i~~~~~--~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv 699 (993)
T PLN02414 625 AHGTNPASAAMCGMKI---VVVGTDAKGNINIEELRKAAEAHKD--NLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQV 699 (993)
T ss_pred cCccCHHHHHHCCCEE---EEeccCCCCCcCHHHHHHHHhccCC--CeEEEEEECCCccccccchHHHHHHHHHHcCCEE
Confidence 7999999999999988 9999999999999999999985321 1223479999999999999999987 7888
Q ss_pred eecccc---------------------ccc-c----------ceeeeecCCCcccccccccc----c-cC---CcccCCC
Q psy13453 95 KVGGVL---------------------RRV-Y----------SSCLVPRGQKSLRTTVLFHF----L-FQ---HWQIPLG 134 (764)
Q Consensus 95 HVDa~l---------------------~~~-y----------~s~ll~rd~~~l~~~~s~~~----d-~~---d~tle~S 134 (764)
+|||+. .|+ + .+++..+. +... .+-... + +. ..+-.|+
T Consensus 700 ~vDgAq~~a~~~l~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~-~L~p-~lPg~~v~~~~~~~~r~~~s~iGt 777 (993)
T PLN02414 700 YMDGANMNAQVGLTSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK-HLAP-FLPSHPVVPTGGIPRPEKTQPLGT 777 (993)
T ss_pred EEEecCHHhccCcCCccccCCCEEEecCCccCCcCcccCCCCeeeEEEch-hhcc-cCCCCccccCCCcccccCCCCcCC
Confidence 999942 111 1 12332222 1111 110000 0 00 1122366
Q ss_pred Ccc-------cHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC--ceeEEEEeeccccccccccc
Q psy13453 135 RRF-------RALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS--MGLVCFRLKVRFWDKLDNLF 205 (764)
Q Consensus 135 Rr~-------~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~--l~iV~Fry~P~~~~~~~~~~ 205 (764)
+.+ .++..|+-|+.+|.+|+++..++++.+|+|++++|++..+....+++. +.=..+...+ .+.
T Consensus 778 ~~~a~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~~~~~~~hEfv~~~~~--l~~----- 850 (993)
T PLN02414 778 ISAAPWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGHYPVLFRGKNGTCAHEFIIDLRP--FKN----- 850 (993)
T ss_pred ccchhhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCeeeeEEEeccc--ccc-----
Confidence 542 223669999999999999999999999999999998754444333322 1111121110 000
Q ss_pred cCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHc
Q psy13453 206 GTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLR 272 (764)
Q Consensus 206 ~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~ 272 (764)
....+ ...+.++|.+.|....+.. |.....||++.+--+ +++++|+|++.++.+.+++.+
T Consensus 851 ---~~g~~--~~di~krL~d~Gihapt~~-~pv~~~lmiepTE~~-skeelDrf~~al~~i~~e~~~ 910 (993)
T PLN02414 851 ---TAGIE--PEDVAKRLMDYGFHAPTMS-WPVPGTLMIEPTESE-SKAELDRFCDALISIREEIAD 910 (993)
T ss_pred ---ccCCC--HHHHHHHHHHcCcEEeeec-cccCCEEEEEeeeeC-CHHHHHHHHHHHHHHHHHHHH
Confidence 00111 1568888888887544432 444668999877666 588999999999999988865
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.2e-09 Score=122.08 Aligned_cols=150 Identities=17% Similarity=0.149 Sum_probs=107.7
Q ss_pred CchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEe
Q psy13453 557 SPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYT 636 (764)
Q Consensus 557 sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~ 636 (764)
.|....+| +.+++++|.+. .+++++|+.|+..++.+. .. +...|++
T Consensus 68 ~pt~~~le----~~la~l~g~~~-----------~v~fsSG~~Ai~~al~~l----l~---------------~Gd~VI~ 113 (437)
T PRK05613 68 NPTVEALE----NRIASLEGGVH-----------AVAFASGQAAETAAILNL----AG---------------AGDHIVT 113 (437)
T ss_pred ChHHHHHH----HHHHHHhCCCe-----------EEEeCCHHHHHHHHHHHh----cC---------------CCCEEEE
Confidence 45554444 47788887642 567777778877665432 11 1225788
Q ss_pred cCCcchhHH----HHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHh
Q psy13453 637 SDQSNSSVE----KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQE 712 (764)
Q Consensus 637 S~~aH~Sv~----kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~ 712 (764)
+...|.+.. +.+...|+.++.++ +.. |+++|+++|++.++ +|+...-++.+|.+-||++|+++|++
T Consensus 114 ~~~~y~~t~~~~~~~l~~~Gi~v~~vd-~~~---d~e~l~~~l~~~tk------~V~~e~~~Np~~~v~di~~I~~la~~ 183 (437)
T PRK05613 114 SPRLYGGTETLFLVTLNRLGIEVTFVE-NPD---DPESWQAAVQPNTK------AFFGETFANPQADVLDIPAVAEVAHR 183 (437)
T ss_pred CCCccHHHHHHHHHHHHhcCeEEEEEC-CCC---CHHHHHHhCCccCe------EEEEECCCCCCCcccCHHHHHHHHHH
Confidence 888998874 34456788988887 332 89999999876432 56666667778899999999999999
Q ss_pred cCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 713 YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 713 ~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
+|+.+|||++++.+....+. --| ||.++.++|||++.+
T Consensus 184 ~gi~livD~t~a~g~~~~p~----~~G---aDivv~S~~K~l~G~ 221 (437)
T PRK05613 184 NQVPLIVDNTIATAALVRPL----ELG---ADVVVASLTKFYTGN 221 (437)
T ss_pred cCCeEEEECCCccccccChH----HhC---CCEEEeeccceecCC
Confidence 99999999999876553332 123 599999999998754
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.1e-09 Score=117.80 Aligned_cols=175 Identities=11% Similarity=0.019 Sum_probs=126.2
Q ss_pred ccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCc
Q psy13453 552 FSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631 (764)
Q Consensus 552 ~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~ 631 (764)
..|........+.+.+.+++.+++|.+.+ .....++|+|+|+++..++.+.. . +.
T Consensus 61 ~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~------~~~~i~~t~G~~~al~~~~~~~~----~---------------~g 115 (386)
T PRK09082 61 NQYPPMTGVAALREAIAAKTARLYGRQYD------ADSEITVTAGATEALFAAILALV----R---------------PG 115 (386)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHhCCCCC------CCCcEEEeCCHHHHHHHHHHHHc----C---------------CC
Confidence 34544556678899999999999887532 11257899999999877765321 1 12
Q ss_pred eEEEecCCcchhHHHHHHhCCCceEEEecC-CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccHHHHH
Q psy13453 632 LVAYTSDQSNSSVEKSAIIGDVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLEELG 707 (764)
Q Consensus 632 ~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d-~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~eIa 707 (764)
..|++..-+|.+...+++..|.+++.+|++ +++.+|+++|++++++. +-+|+.+..++.+|.+ +++++|.
T Consensus 116 d~Vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~~~~~i~ 189 (386)
T PRK09082 116 DEVIVFDPSYDSYAPAIELAGGRAVRVALQPPDFRVDWQRFAAAISPR------TRLIILNTPHNPSGTVWSAADMRALW 189 (386)
T ss_pred CEEEEeCCCchhhHHHHHHcCCEEEEEecCcccccCCHHHHHHhcCcc------ceEEEEeCCCCCCCcCCCHHHHHHHH
Confidence 257788889999999999999999999997 46789999999988542 3366667778899976 8999999
Q ss_pred HHHHhcCCEEEEeccccccccccchhhh--hhcCCCcccEEEEcCCccCCCC
Q psy13453 708 PICQEYNIWLHVDAAYAGSALLLPEYAH--LKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 708 ~i~~~~glwLHVDaA~Gg~~l~~~~~r~--~l~gie~aDSit~d~HK~l~~P 757 (764)
++|++||+|+++|.+|+....-...... .+.++..-.-+..++.|.++.|
T Consensus 190 ~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~ 241 (386)
T PRK09082 190 QLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVT 241 (386)
T ss_pred HHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccch
Confidence 9999999999999999764331111111 1222222235566889988655
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.7e-09 Score=115.11 Aligned_cols=159 Identities=16% Similarity=0.075 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
..+..++.+++++++|.+ ..+++++|+++++.++.+. .. ++..|++++.+
T Consensus 83 ~~~~~~l~~~la~~~~~~-----------~~i~~~~g~~~~~~~l~~~----~~---------------~gd~V~~~~~~ 132 (385)
T PRK05958 83 SPAHEALEEELAEWFGAE-----------RALLFSSGYAANLAVLTAL----AG---------------KGDLIVSDKLN 132 (385)
T ss_pred cHHHHHHHHHHHHHhCCC-----------cEEEECcHHHHHHHHHHHh----CC---------------CCCEEEEeCcc
Confidence 345566777888888743 3577888899887655422 11 12257788899
Q ss_pred chhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEe
Q psy13453 641 NSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVD 720 (764)
Q Consensus 641 H~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVD 720 (764)
|.+...++...|..++.+|. .|++++++.+++.. ..+.+|+.....+.+|..+++++|+++|++||+|+++|
T Consensus 133 ~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~i~~~~---~~~~lvi~~~~~~~~G~~~~l~~i~~ia~~~~~~li~D 204 (385)
T PRK05958 133 HASLIDGARLSRARVRRYPH-----NDVDALEALLAKWR---AGRALIVTESVFSMDGDLAPLAELVALARRHGAWLLVD 204 (385)
T ss_pred CHHHHHHHHhcCCceEEeCC-----CCHHHHHHHHHhcc---CCCeEEEEEecccCCCCcCCHHHHHHHHHHhCCEEEEE
Confidence 99999999999999888875 37899999886531 12445555556677899999999999999999999999
Q ss_pred cccccccccc-chhhhhhcCCC-ccc-EEEEcCCccCCCC
Q psy13453 721 AAYAGSALLL-PEYAHLKRGLE-YVD-SFDFNTHKWLLVN 757 (764)
Q Consensus 721 aA~Gg~~l~~-~~~r~~l~gie-~aD-Sit~d~HK~l~~P 757 (764)
.+|+.+.+.. ...-....++. ..| -+..++||+++.+
T Consensus 205 e~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 244 (385)
T PRK05958 205 EAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGSS 244 (385)
T ss_pred CcccccccCCCCCchHHhhCCCCCCceEEEEechhhcccC
Confidence 9997543321 11001111221 223 5578999999753
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-08 Score=114.68 Aligned_cols=197 Identities=15% Similarity=0.131 Sum_probs=127.6
Q ss_pred CccccccCCCCChHHHHHH-HHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHH
Q psy13453 523 PQFNAYFPTGSSYPSIVGD-MLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEAT 601 (764)
Q Consensus 523 P~~~~~~~~~~~~~~~lad-~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeAN 601 (764)
--|.+..+-+.+ .++-.. |....... ..|..+|...++|+. +++++|.+. .++|++||.|.
T Consensus 38 ~v~iDLltDsgT-~aMs~~q~a~~~~GD--e~yag~~s~~~lE~~----va~~~G~~~-----------av~v~sGT~Al 99 (450)
T TIGR02618 38 DVYIDLLTDSGT-NAMSDKQWAGLMMGD--EAYAGSRNFYHLERT----VRELYGFKY-----------VVPTHQGRGAE 99 (450)
T ss_pred ceEEEcccCCCc-HHHHHHHHHHhhhcc--hhhcCCCcHHHHHHH----HHHHHCCCe-----------EEEcCCHHHHH
Confidence 356777765554 333222 33333332 458899999999985 466777753 79999999994
Q ss_pred HHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHH-HHhCCCceEEEecC----------CCCcccHHH
Q psy13453 602 LVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKS-AIIGDVPVRQLRSD----------DNGVLRGDA 670 (764)
Q Consensus 602 l~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kA-a~~lGl~v~~Vp~d----------~~g~md~~~ 670 (764)
..+.. + ..+ +.-.| +...|++-.++ ....|...+.+++| .+|.||+++
T Consensus 100 ~ll~~-l---~l~---------------pGDeV--psn~~f~Tt~ahIe~~Gav~vDi~~dea~~~~~~~p~~GniD~~~ 158 (450)
T TIGR02618 100 NLLSQ-I---AIK---------------PGDYV--PGNMYFTTTRYHQEKNGATFVDIIIDEAHDAQLNIPFKGNVDLKK 158 (450)
T ss_pred HHHHH-h---CCC---------------CcCEE--CCceeHHHHHHHHHhCCeEEEeeecccccccccCCCCCCCcCHHH
Confidence 43211 1 010 11123 56888777777 56777755556443 368999999
Q ss_pred HHHHHHHhhhcCCCceEEEEeeccCCc-ccc---ccHHHHHHHHHhcCCEEEEeccccc-cccccch----hh-----hh
Q psy13453 671 LLTAVKEDLAKGLIPCCLIATLGTTGT-CAF---DNLEELGPICQEYNIWLHVDAAYAG-SALLLPE----YA-----HL 736 (764)
Q Consensus 671 Le~~I~~~~~~G~~p~~VvataGTT~~-Gai---Dpl~eIa~i~~~~glwLHVDaA~Gg-~~l~~~~----~r-----~~ 736 (764)
|+++|++... .+.+ +|+++..++.. |.. +++++|.++|++||+++|.|||... .+++..+ +. ..
T Consensus 159 Le~aI~~~~~-~~~~-lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei 236 (450)
T TIGR02618 159 LQKLIDEVGA-DKIP-YICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEI 236 (450)
T ss_pred HHHHhccccC-cccC-ceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHH
Confidence 9999985321 2334 44444444544 666 7899999999999999999999877 3444311 11 00
Q ss_pred -hcCCCcccEEEEcCCccCCCCcCc
Q psy13453 737 -KRGLEYVDSFDFNTHKWLLVNFDC 760 (764)
Q Consensus 737 -l~gie~aDSit~d~HK~l~~P~~~ 760 (764)
-+=.+.||+++.++||-.++|.|.
T Consensus 237 ~~e~~~~aD~~~~S~~Kd~~~~~GG 261 (450)
T TIGR02618 237 LKEMMSYADGCTMSGKKDCLVNIGG 261 (450)
T ss_pred HHHHhccCcEEEEeeccCCCCCCce
Confidence 111356899999999999999874
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.7e-09 Score=126.20 Aligned_cols=170 Identities=14% Similarity=0.072 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcch
Q psy13453 563 LEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNS 642 (764)
Q Consensus 563 lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~ 642 (764)
.-.++-+..|++||.+.+| ++|.|.|.+|..++.++.. +.-.|++...+|-
T Consensus 175 ~i~eAq~~AA~~fgAd~ty----------FlvNGTS~gn~a~i~a~~~-------------------~Gd~VLvdRN~HK 225 (720)
T PRK13578 175 AAKDAQKHAAKVFNADKTY----------FVLNGTSASNKVVTNALLT-------------------PGDLVLFDRNNHK 225 (720)
T ss_pred HHHHHHHHHHHHhCCCceE----------EEeCChhHHHHHHHHHhcC-------------------CCCEEEeecccHH
Confidence 4455667889999998864 4778888888887775421 1236889999999
Q ss_pred hHHHH-HHhCCCceEEEecCC-----CCcccHHH-----HHHHHHHh---hhcCCCc-eEEEEeeccCCccccccHHHHH
Q psy13453 643 SVEKS-AIIGDVPVRQLRSDD-----NGVLRGDA-----LLTAVKED---LAKGLIP-CCLIATLGTTGTCAFDNLEELG 707 (764)
Q Consensus 643 Sv~kA-a~~lGl~v~~Vp~d~-----~g~md~~~-----Le~~I~~~---~~~G~~p-~~VvataGTT~~GaiDpl~eIa 707 (764)
|+..+ ..+.|+..+.+++.- -|-|+++. ++++|++. .++..+| -+|++|.+|. .|.+-|+++|+
T Consensus 226 Sv~hgaLiLsGa~PVYl~P~~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY-dG~~ydi~~I~ 304 (720)
T PRK13578 226 SNHHGALIQAGATPVYLETARNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY-DGTIYNARQVV 304 (720)
T ss_pred HHHHHHHHHcCCeEEEeeccccccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCC-cceeecHHHHH
Confidence 99996 778899888887642 23456544 99999875 2223355 5677777654 69999999999
Q ss_pred HH-HHhcCCEEEEeccccccccccchhhhhh--cCCCccc----EEEEcCCccCCCCcCceee
Q psy13453 708 PI-CQEYNIWLHVDAAYAGSALLLPEYAHLK--RGLEYVD----SFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 708 ~i-~~~~glwLHVDaA~Gg~~l~~~~~r~~l--~gie~aD----Sit~d~HK~l~~P~~~g~l 763 (764)
++ |+.++ .||||-|||+.+.|.|.++.+- ..=..|| -++-|.||.|.+=.++|.+
T Consensus 305 ~~~~h~~~-~llvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~alTQaS~L 366 (720)
T PRK13578 305 DKIGHLCD-YILFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQI 366 (720)
T ss_pred HHhhccCC-cEEEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcchhhhhHhhh
Confidence 98 78888 9999999999998888654321 1113579 9999999999876666554
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.5e-09 Score=116.49 Aligned_cols=218 Identities=11% Similarity=0.034 Sum_probs=150.2
Q ss_pred HHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCceecc
Q psy13453 24 SFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKVGG 98 (764)
Q Consensus 24 v~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHVDa 98 (764)
+.+.++..|... +.||+++++.+|+++|+++|.++ +-+++-+..+.++|.+-|++++++ +++++||+
T Consensus 123 ~~~~~~~~g~~v---~~v~~~~~~~~~~~~l~~~i~~~-----t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~ 194 (398)
T TIGR03392 123 WLMVAQQTGAKV---VKLPIGADLLPDIRQLPELLTPR-----TRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDG 194 (398)
T ss_pred HHHHHHHcCcEE---EEEecCCCCCcCHHHHHHHhccC-----ceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEh
Confidence 566788899877 99999988999999999999753 224445778899999999999876 88999999
Q ss_pred ccc--------------------cc-c---c-eeeeecCCCccccc--cccc------cccCCc-------ccC-CCCcc
Q psy13453 99 VLR--------------------RV-Y---S-SCLVPRGQKSLRTT--VLFH------FLFQHW-------QIP-LGRRF 137 (764)
Q Consensus 99 ~l~--------------------~~-y---~-s~ll~rd~~~l~~~--~s~~------~d~~d~-------tle-~SRr~ 137 (764)
... ++ + + ++++.+. +.+... +... .++.++ .++ |+...
T Consensus 195 a~~~~~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~ 273 (398)
T TIGR03392 195 AQGVVHGPPDVQALDIDFYAFSGHKLYGPTGIGVLYGKT-ELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNI 273 (398)
T ss_pred hhhcCCCCCChhhcCCCEEEEecccccCCCceEEEEEcH-HHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCH
Confidence 431 11 1 1 2333322 111100 0000 000011 111 22222
Q ss_pred -cHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHH
Q psy13453 138 -RALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLN 216 (764)
Q Consensus 138 -~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n 216 (764)
..+.+.++++++-..|+.++.++..++++++.+.+++.+++++...|...+++|+.. +.+ .
T Consensus 274 ~~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~l~g~~~~~~~~~~i~~~~~~----------------~~~--~ 335 (398)
T TIGR03392 274 AGVIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQLPGFRSFRCPGSSLLAFDFA----------------GVH--H 335 (398)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCCcEEEEEeC----------------CcC--H
Confidence 456888999988888898888999999999999999999999998888889999752 111 2
Q ss_pred HHHHHHHHhcCcEEEEecee--------CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 217 KAVYDRIIARKVIYIVKGSF--------QDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 217 ~~L~~~L~~~G~~~vs~t~l--------~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
..+.++|.++|....+.... ....++|+++. ..+|+++++.+++.|+++.+.
T Consensus 336 ~~l~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~-~~~t~~ei~~l~~~l~~~~~~ 395 (398)
T TIGR03392 336 SDLAALLAESGIALRAGQHCAQPLMAALGVSGTLRASFA-PYNTQQDVDALVDAVGAALEL 395 (398)
T ss_pred HHHHHHHHhCCEEEecCccchHHHHHHhCCCCEEEEEee-ccCCHHHHHHHHHHHHHHHHH
Confidence 46778888888755443311 11348999755 468899999999999987654
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.3e-09 Score=122.64 Aligned_cols=172 Identities=16% Similarity=0.056 Sum_probs=120.3
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
......++|..+++...++||.+... .+.-+-.-+||.||+.++.+-. . |...|+
T Consensus 188 G~~~iD~iE~la~era~~lF~~~~~~------~gaNVQp~SGs~AN~aV~~ALl----~---------------PGD~IL 242 (586)
T PLN02271 188 GNQYIDQIERLCCERALAAFGLDSEK------WGVNVQPYSCTSANFAVYTGLL----L---------------PGDRIM 242 (586)
T ss_pred CChhHHHHHHHHHHHHHHHhCCcccc------cccceeeccHHHHHHHHHHHhc----C---------------CCCEEE
Confidence 34556789999999999999986421 1112444588999988875431 1 112344
Q ss_pred ec---CCcchhHH------HHHHhCCCceEEEe--cC-CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccH
Q psy13453 636 TS---DQSNSSVE------KSAIIGDVPVRQLR--SD-DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNL 703 (764)
Q Consensus 636 ~S---~~aH~Sv~------kAa~~lGl~v~~Vp--~d-~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl 703 (764)
.. .-.|.+.. +-+...|+.+..+| +| ++|.+|.++|++...+. +|-+|++..-+. -..-|+
T Consensus 243 ~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~~-----rPKLII~g~Say--pr~~D~ 315 (586)
T PLN02271 243 GLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALDF-----RPKILICGGSSY--PREWDY 315 (586)
T ss_pred EecCCCCCchhcccccccccccccccceEEEEEcccccccCccCHHHHHHHhhhc-----CCeEEEECchhc--cCcCCH
Confidence 32 34565543 33455677677776 65 67999999999865332 366776633333 266789
Q ss_pred HHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 704 EELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 704 ~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
++|++||+++|++|+||+||..+++....+..- +..||.++.+.||||..|.| |++
T Consensus 316 ~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP---~~~aDvvt~TTHKtLrGPrG-G~I 371 (586)
T PLN02271 316 ARFRQIADKCGAVLMCDMAHISGLVAAKECVNP---FDYCDIVTSTTHKSLRGPRG-GII 371 (586)
T ss_pred HHHHHHHHHcCCEEEEECcccccccccCcCCCC---CcCCcEEEeCCcccCCCCCc-eEE
Confidence 999999999999999999999998876543322 34689999999999999999 544
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.3e-09 Score=118.19 Aligned_cols=163 Identities=15% Similarity=0.064 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchh
Q psy13453 564 EVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSS 643 (764)
Q Consensus 564 E~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~S 643 (764)
..++.+++++++|.++ ...++|+|+|+++..++.+.. . +...|++++-++..
T Consensus 68 ~~~lr~~ia~~l~~~~---------~~v~~~~g~t~al~~~~~~~~----~---------------~gd~vl~~~p~y~~ 119 (380)
T PRK06225 68 FPELRELILKDLGLDD---------DEALITAGATESLYLVMRAFL----S---------------PGDNAVTPDPGYLI 119 (380)
T ss_pred hHHHHHHHHHhcCCCC---------CcEEEeCCHHHHHHHHHHHhc----C---------------CCCEEEEcCCCCcc
Confidence 3456778888888765 368999999999887776431 1 01135666667777
Q ss_pred HHHHHHhCCCceEEEecCC---CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccHHHHHHHHHhcCCEE
Q psy13453 644 VEKSAIIGDVPVRQLRSDD---NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLEELGPICQEYNIWL 717 (764)
Q Consensus 644 v~kAa~~lGl~v~~Vp~d~---~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~eIa~i~~~~glwL 717 (764)
...++...|.+++.+|++. ++.+|+++|++.+.+. +-+|+.+..++.+|.+ +++.+|+++|++||+++
T Consensus 120 ~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~i 193 (380)
T PRK06225 120 IDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMDEN------TRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFL 193 (380)
T ss_pred hHHHHHHhCceEEeeccccccCCccCCHHHHHhhcCCC------ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEE
Confidence 7788888999999999742 4689999999988643 3366666778889986 57999999999999999
Q ss_pred EEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 718 HVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 718 HVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
++|.+|+.+..-.+... .+. ....-+..+++|+++.| .-+|.+
T Consensus 194 i~De~y~~~~~~~~~~~-~~~--~~~~i~~~s~SK~~g~~G~RiG~i 237 (380)
T PRK06225 194 LHDCTYRDFAREHTLAA-EYA--PEHTVTSYSFSKIFGMAGLRIGAV 237 (380)
T ss_pred EEehhHHHHhccCCchh-hcC--CCCEEEEeechhhcCCccceeEEE
Confidence 99999875321111000 011 11234455889999744 235655
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.7e-09 Score=118.85 Aligned_cols=151 Identities=19% Similarity=0.146 Sum_probs=112.0
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
..|...++|+ .+++++|.+ ..+++++|++||..++.+... +...|+
T Consensus 38 ~~p~~~~le~----~la~l~g~~-----------~a~~~~sG~~Ai~~~l~~l~~-------------------~gd~Vl 83 (369)
T cd00614 38 GNPTVDALEK----KLAALEGGE-----------AALAFSSGMAAISTVLLALLK-------------------AGDHVV 83 (369)
T ss_pred CChhHHHHHH----HHHHHHCCC-----------CEEEEcCHHHHHHHHHHHHcC-------------------CCCEEE
Confidence 5677777776 556666653 358889999999888775421 112477
Q ss_pred ecCCcchhHHH----HHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHH
Q psy13453 636 TSDQSNSSVEK----SAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQ 711 (764)
Q Consensus 636 ~S~~aH~Sv~k----Aa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~ 711 (764)
++...|.+... .+...|++++.++.+ |++++++++++. +-+|+....++.+|.+.|+++|+++|+
T Consensus 84 ~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~------~~~v~~e~~~np~g~~~dl~~i~~la~ 152 (369)
T cd00614 84 ASDDLYGGTYRLFERLLPKLGIEVTFVDPD-----DPEALEAAIKPE------TKLVYVESPTNPTLKVVDIEAIAELAH 152 (369)
T ss_pred ECCCCcchHHHHHHHHHhhcCeEEEEeCCC-----CHHHHHHhcCCC------CeEEEEECCCCCCCeecCHHHHHHHHH
Confidence 77778876543 345678888888765 488888888542 447778888889999999999999999
Q ss_pred hcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCc
Q psy13453 712 EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNF 758 (764)
Q Consensus 712 ~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~ 758 (764)
+||++++||.+|+.+....+ .-. .+|.++.+++|+++.+-
T Consensus 153 ~~g~~livD~t~~~~~~~~~----~~~---g~Divv~S~tK~l~g~~ 192 (369)
T cd00614 153 EHGALLVVDNTFATPYLQRP----LEL---GADIVVHSATKYIGGHS 192 (369)
T ss_pred HcCCEEEEECCCcchhcCCh----hhh---CCcEEEeccceeccCCC
Confidence 99999999999987654221 111 46999999999998654
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.7e-09 Score=118.71 Aligned_cols=150 Identities=17% Similarity=0.120 Sum_probs=110.4
Q ss_pred CchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEe
Q psy13453 557 SPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYT 636 (764)
Q Consensus 557 sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~ 636 (764)
.|...++| +.+++++|.+. .++|+||++|+..++.+.. . +.-.|++
T Consensus 60 ~p~~~~le----~~la~l~g~~~-----------~v~~ssG~~Ai~~al~al~----~---------------~Gd~Vi~ 105 (390)
T PRK08133 60 NPTVTMFQ----ERLAALEGAEA-----------CVATASGMAAILAVVMALL----Q---------------AGDHVVS 105 (390)
T ss_pred ChHHHHHH----HHHHHHhCCCc-----------EEEECCHHHHHHHHHHHHh----C---------------CCCEEEE
Confidence 44444444 46777887643 5899999999988776431 1 1124677
Q ss_pred cCCcchhHH----HHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHh
Q psy13453 637 SDQSNSSVE----KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQE 712 (764)
Q Consensus 637 S~~aH~Sv~----kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~ 712 (764)
+...|.+.. +.+...|++++.++++ |+++++++|++. +-+|++...++.+|.+.|+++|+++|++
T Consensus 106 ~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~~i~~~------tklV~ie~p~NptG~v~dl~~I~~la~~ 174 (390)
T PRK08133 106 SRSLFGSTVSLFEKIFARFGIETTFVDLT-----DLDAWRAAVRPN------TKLFFLETPSNPLTELADIAALAEIAHA 174 (390)
T ss_pred ccCcchhHHHHHHHHHHHcCcEEEEECCC-----CHHHHHHhcCcC------CeEEEEECCCCCCCCcCCHHHHHHHHHH
Confidence 887775543 3456689999888875 688999888653 3477788889999999999999999999
Q ss_pred cCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCc
Q psy13453 713 YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNF 758 (764)
Q Consensus 713 ~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~ 758 (764)
||++++||.+|+......| .-. .+|-++.++||+++.+-
T Consensus 175 ~gi~livD~t~~~~~~~~p----l~~---g~Divv~S~sK~~~g~g 213 (390)
T PRK08133 175 AGALLVVDNCFCTPALQQP----LKL---GADVVIHSATKYLDGQG 213 (390)
T ss_pred cCCEEEEECCCcccccCCc----hhh---CCcEEEeecceeecCCc
Confidence 9999999999976544332 111 35999999999998654
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.3e-09 Score=117.38 Aligned_cols=153 Identities=10% Similarity=0.079 Sum_probs=109.9
Q ss_pred HHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhH
Q psy13453 565 VLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV 644 (764)
Q Consensus 565 ~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv 644 (764)
++..+++++.+|.+ ..++|+|||.|+.+++.+.- . .++-.|+++..+|.+.
T Consensus 34 ~~~e~~la~~~g~~-----------~~v~~~sgt~al~~~l~~~~---~---------------~~Gd~Viv~~~t~~~~ 84 (375)
T PRK11706 34 RRCQQWLEQRFGSA-----------KVLLTPSCTAALEMAALLLD---I---------------QPGDEVIMPSYTFVST 84 (375)
T ss_pred HHHHHHHHHHhCCC-----------eEEEECCHHHHHHHHHHHhC---C---------------CCCCEEEECCCCcHHH
Confidence 33445677777763 36899999999766654320 0 1123588899999999
Q ss_pred HHHHHhCCCceEEEecCCC-CcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccc
Q psy13453 645 EKSAIIGDVPVRQLRSDDN-GVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAY 723 (764)
Q Consensus 645 ~kAa~~lGl~v~~Vp~d~~-g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~ 723 (764)
..++...|+.++.+++|++ +.+|+++|+++|++. +-+|+.+ ..+|...|+++|.++|++||+++++|+||
T Consensus 85 ~~~~~~~G~~~v~~d~d~~~~~~d~~~le~~i~~~------tk~i~~~---~~~G~~~~~~~i~~la~~~~i~vIeD~a~ 155 (375)
T PRK11706 85 ANAFVLRGAKIVFVDIRPDTMNIDETLIEAAITPK------TRAIVPV---HYAGVACEMDTIMALAKKHNLFVVEDAAQ 155 (375)
T ss_pred HHHHHHcCCEEEEEecCCCcCCcCHHHHHHhcCCC------CeEEEEe---CCCCCccCHHHHHHHHHHcCCEEEEECcc
Confidence 9999999999999999866 589999999998653 2245444 35798899999999999999999999999
Q ss_pred cccccccchhhhhhcCCCcccEEEEcCC--ccCCCCcCc
Q psy13453 724 AGSALLLPEYAHLKRGLEYVDSFDFNTH--KWLLVNFDC 760 (764)
Q Consensus 724 Gg~~l~~~~~r~~l~gie~aDSit~d~H--K~l~~P~~~ 760 (764)
+.+.....+ . + |- ..|--++|+| |.+.+.-+.
T Consensus 156 a~g~~~~~~--~-~-g~-~~~~~~~Sf~~~K~l~~g~gG 189 (375)
T PRK11706 156 GVMSTYKGR--A-L-GT-IGHIGCFSFHETKNYTAGEGG 189 (375)
T ss_pred ccccccCCe--e-e-ec-CcCEEEEeCCCCccccccCCe
Confidence 876532211 1 1 11 2355567777 988664443
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.3e-09 Score=114.91 Aligned_cols=181 Identities=14% Similarity=0.067 Sum_probs=125.8
Q ss_pred ccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCc
Q psy13453 552 FSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631 (764)
Q Consensus 552 ~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~ 631 (764)
..|...+...++.+.+.+|+.+.+|++.+ .....++|+|+|+++..++.+. .. ++
T Consensus 55 ~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~------~~~~i~~t~G~~~al~~~~~~~----~~---------------~g 109 (387)
T PRK07777 55 NQYPPGPGIPELRAAIAAQRRRRYGLEYD------PDTEVLVTVGATEAIAAAVLGL----VE---------------PG 109 (387)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCCC------CCCcEEEeCCcHHHHHHHHHHh----cC---------------CC
Confidence 34555556678888888999888887532 0124789999999987665422 11 11
Q ss_pred eEEEecCCcchhHHHHHHhCCCceEEEecCCC---CcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccHHH
Q psy13453 632 LVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDN---GVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLEE 705 (764)
Q Consensus 632 ~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~---g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~e 705 (764)
..|++..-.|.....++...|..++.+|.+++ +.+|+++|++.+.+. +-+|+.+..++.+|.+ +++++
T Consensus 110 d~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~~~~~ 183 (387)
T PRK07777 110 DEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDALRAAVTPR------TRALIVNSPHNPTGTVLTAAELAA 183 (387)
T ss_pred CEEEEeCCCchhhHHHHHHCCCEEEEeecCCccCCCcCCHHHHHHhcCcc------cEEEEEcCCCCCCCccCCHHHHHH
Confidence 24666677788888888999999999998754 569999999988543 3366667778889987 56999
Q ss_pred HHHHHHhcCCEEEEeccccccccccchhhh--hhcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 706 LGPICQEYNIWLHVDAAYAGSALLLPEYAH--LKRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 706 Ia~i~~~~glwLHVDaA~Gg~~l~~~~~r~--~l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
|.++|++|++++++|.+|+....-...+.. .+.+....+-+..+++|.++.| .-+|.+
T Consensus 184 l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~ 244 (387)
T PRK07777 184 IAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKIGWA 244 (387)
T ss_pred HHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCcCceeEEE
Confidence 999999999999999999764321111111 1223333467788999999866 224543
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.6e-09 Score=117.33 Aligned_cols=130 Identities=10% Similarity=0.145 Sum_probs=99.5
Q ss_pred CchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEe
Q psy13453 557 SPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYT 636 (764)
Q Consensus 557 sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~ 636 (764)
.|...++| +++++.+|.+ ..++|+|||+++.+++.+.. ..++..|++
T Consensus 30 g~~~~~~e----~~la~~~g~~-----------~~v~~~sgt~aL~~~l~al~------------------~~pGd~Viv 76 (376)
T TIGR02379 30 GPFSRRCE----TWLENRTGTK-----------KALLTPSCTAALEMAALLLD------------------IQPGDEVIM 76 (376)
T ss_pred cHHHHHHH----HHHHHHhCCC-----------eEEEeCCHHHHHHHHHHHcC------------------CCCcCEEEE
Confidence 45555555 4666666653 36899999999766655320 012235788
Q ss_pred cCCcchhHHHHHHhCCCceEEEecCCC-CcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCC
Q psy13453 637 SDQSNSSVEKSAIIGDVPVRQLRSDDN-GVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNI 715 (764)
Q Consensus 637 S~~aH~Sv~kAa~~lGl~v~~Vp~d~~-g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~gl 715 (764)
+..+|.+...++...|..++.|++|.+ +.+|+++|+++|++. +-+|+. +..+|..-|+++|.++|++||+
T Consensus 77 ~~~t~~~~~~~~~~~G~~~v~vd~d~~~~~~d~~~le~~i~~~------tk~Iip---~~~~G~~~d~~~I~~la~~~~i 147 (376)
T TIGR02379 77 PSYTFVSTANAFVLRGAKIVFVDIRPDTMNIDETLIESAITHR------TKAIVP---VHYAGVACDMDTIMALANKHQL 147 (376)
T ss_pred CCCCcHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCcC------ceEEEE---eCCCCCccCHHHHHHHHHHCCC
Confidence 999999999999999999999999865 689999999998653 225544 3457999999999999999999
Q ss_pred EEEEecccccccc
Q psy13453 716 WLHVDAAYAGSAL 728 (764)
Q Consensus 716 wLHVDaA~Gg~~l 728 (764)
++++|+||+.+..
T Consensus 148 ~vIeDaa~~~g~~ 160 (376)
T TIGR02379 148 FVIEDAAQGVMST 160 (376)
T ss_pred EEEEECccccCCc
Confidence 9999999987543
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.5e-09 Score=117.42 Aligned_cols=222 Identities=9% Similarity=-0.053 Sum_probs=143.4
Q ss_pred ccccCCcceeeeeHHHHHhhcC----CCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCc-
Q psy13453 11 AYPSETLSLLIYESFKATHSLS----GTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSL- 85 (764)
Q Consensus 11 ~~~~~~~~~~~YSv~KAa~~LG----l~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi- 85 (764)
+..++. .|-|...++..+| ... +.||+++++++|+++|+++|.++ +.+++.+.++ ++|.++|+
T Consensus 111 Vl~~~~---~h~~~~~~~~~~~~~~g~~~---~~v~~~~~~~~d~~~l~~~i~~~-----t~~viv~~~~-~~G~~~~~l 178 (398)
T cd00613 111 VLVPDS---AHPTNPAVARTRGEPLGIEV---VEVPSDEGGTVDLEALKEEVSEE-----VAALMVQYPN-TLGVFEDLI 178 (398)
T ss_pred EEEcCc---cCcchHHHHHHhcccCCcEE---EEeccCCCCCcCHHHHHHhcCCC-----eEEEEEECCC-CCceecchH
Confidence 344455 6788888888887 654 88999888899999999998643 3344555566 57999885
Q ss_pred hhhhc-----CCCceeccccc--------------------ccc----------ceeeeecCCCccccccccc-------
Q psy13453 86 NAPVS-----NGPLKVGGVLR--------------------RVY----------SSCLVPRGQKSLRTTVLFH------- 123 (764)
Q Consensus 86 ~~ia~-----~~wlHVDa~l~--------------------~~y----------~s~ll~rd~~~l~~~~s~~------- 123 (764)
++|++ ++|+++|+... +++ ++++..++ +.... +...
T Consensus 179 ~~i~~la~~~g~~livD~~~~~~~~~~~~~~~~~d~~~~s~~K~~~p~g~Ggp~~g~l~~~~-~~~~~-~~~~~~~~~~~ 256 (398)
T cd00613 179 KEIADIAHSAGALVYVDGDNLNLTGLKPPGEYGADIVVGNLQKTGVPHGGGGPGAGFFAVKK-ELVRF-LPGRLVGVTKD 256 (398)
T ss_pred HHHHHHHHhcCCEEEEEeccccccCCCChHHcCCCEEEeeccccCCCCCCCCCceeEEEEhh-hhHhh-CCCCeeccccc
Confidence 88876 89999998420 110 11222221 11110 0000
Q ss_pred c-ccCCcc------------------cCCCCcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC
Q psy13453 124 F-LFQHWQ------------------IPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPP 184 (764)
Q Consensus 124 ~-d~~d~t------------------le~SRr~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P 184 (764)
. +...+. +-..-...+...|++++.++.+|+.++.++..++++++.+.|++.+.+.....+
T Consensus 257 ~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 336 (398)
T cd00613 257 AEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEGLKEIAERAHLNANYLAKRLKEVGGVLPFNGP 336 (398)
T ss_pred cCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCC
Confidence 0 000000 011112344577999999999999999999999999999999998766544445
Q ss_pred CceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHH
Q psy13453 185 SMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEI 263 (764)
Q Consensus 185 ~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l 263 (764)
...+++|++.+. .+.-..++.++|.++|+.... ..+.+...+|++ .+..+++++|+.+++.|
T Consensus 337 ~~~~v~~~~~~~---------------~~~~~~~~~~~L~~~gi~~~~-~~~~~~~~lRis-~~~~~t~edid~~~~~L 398 (398)
T cd00613 337 FFHEFVLRLPPL---------------YGIRAEDLAKALIDGGFHAPT-MYLPVDGTLMIE-PTETETKEELDALLEAL 398 (398)
T ss_pred eeEEEEEEcCCc---------------chHHHHHHHHhhhhcCccccc-cccCCCCeEEEE-cCCCCCHHHHHHHHHhC
Confidence 566778865310 011235788888888875322 113455789996 47788999999998753
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.4e-09 Score=120.77 Aligned_cols=221 Identities=12% Similarity=0.054 Sum_probs=140.9
Q ss_pred ccccCCcceeeeeHHHHHhh----cCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCch
Q psy13453 11 AYPSETLSLLIYESFKATHS----LSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLN 86 (764)
Q Consensus 11 ~~~~~~~~~~~YSv~KAa~~----LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~ 86 (764)
++.++. .|.|..++++. .|+.. +.||++++ ++|+++|+++|+++ +-+++.+.+ +++|.+||++
T Consensus 157 Vlv~~~---~~~~~~~~~~~~~~~~G~~~---~~v~~~~~-~~d~~~l~~~i~~~-----t~~v~l~~p-n~tG~v~~l~ 223 (447)
T PRK00451 157 VLVSGA---VHPEYREVLKTYLKGQGIEV---VEVPYEDG-VTDLEALEAAVDDD-----TAAVVVQYP-NFFGVIEDLE 223 (447)
T ss_pred EEEeCc---cCHHHHHHHHHHHHhCCcEE---EEecCCCC-CCCHHHHHHhcCCC-----eEEEEEECC-CCCCeeCCHH
Confidence 566676 78889998876 46655 99999988 99999999999753 224455566 7799999999
Q ss_pred hhhc-----CCCcee--ccccc------------------ccc----------ceeeeecCCCcccccccc---------
Q psy13453 87 APVS-----NGPLKV--GGVLR------------------RVY----------SSCLVPRGQKSLRTTVLF--------- 122 (764)
Q Consensus 87 ~ia~-----~~wlHV--Da~l~------------------~~y----------~s~ll~rd~~~l~~~~s~--------- 122 (764)
+|++ ++|++| |+.-. +++ .+++..++ +.... +..
T Consensus 224 ~I~~~a~~~~~~~iv~~d~~~~g~~~~~~~~~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~-~~~~~-~~~~~~g~~~~~ 301 (447)
T PRK00451 224 EIAEIAHAGGALFIVGVDPVSLGLLKPPGEYGADIVVGEGQPLGIPLSFGGPYLGFFATRK-KLVRQ-MPGRLVGETVDA 301 (447)
T ss_pred HHHHHHHHCCCEEEEEcChHHhccCCCcccCCCCEEEECCCcCCCCCCCCCCCchHHHhhH-HHHhh-CCCCEeeeeccc
Confidence 9887 889988 64210 010 01111111 00000 000
Q ss_pred ----cc--------ccCCc----ccCCCC-cccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC
Q psy13453 123 ----HF--------LFQHW----QIPLGR-RFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS 185 (764)
Q Consensus 123 ----~~--------d~~d~----tle~SR-r~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~ 185 (764)
.+ ++..+ ..-|++ ...++..++.++++|.+|+.++.++..++++++.+.|++.++++++..+.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~ 381 (447)
T PRK00451 302 DGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEIGGVELFDGPF 381 (447)
T ss_pred CCCeeeEeeccccccccccccccccccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhcCCEEecCCCe
Confidence 00 00000 011122 12335667778889999999999999999999999999999999885554
Q ss_pred ceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEE-E-Eecee-CCeeEEEEeccCCCCCHHHHHHHHHH
Q psy13453 186 MGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIY-I-VKGSF-QDRLFMRFAICSSQTEESDVQLGWNE 262 (764)
Q Consensus 186 l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~-v-s~t~l-~g~~~LRi~v~np~Tt~e~i~~~l~~ 262 (764)
+..+++++. .+ ..++.++|.++|..- + ..... ....++|+++... +++++++++++.
T Consensus 382 ~~~~~v~~~-----------------~~--~~~~~~~L~~~gi~~~~~~~~~~~~~~~~~rvs~~~~-~t~e~i~~l~~~ 441 (447)
T PRK00451 382 FNEFVVRLP-----------------KP--AEEVNEALLEKGILGGYDLGRYYPELGNHLLVCVTEK-RTKEDIDALVAA 441 (447)
T ss_pred EEEEEEecC-----------------CC--HHHHHHHHHhcCCCCCcccccccCCcCCEEEEecCCC-CCHHHHHHHHHH
Confidence 555556531 01 146788888876531 1 01011 1124789875544 578899999999
Q ss_pred HHHH
Q psy13453 263 IRTA 266 (764)
Q Consensus 263 l~~~ 266 (764)
|+++
T Consensus 442 L~~~ 445 (447)
T PRK00451 442 LGEV 445 (447)
T ss_pred HHHH
Confidence 9865
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-08 Score=112.27 Aligned_cols=220 Identities=13% Similarity=0.011 Sum_probs=143.2
Q ss_pred eeee--HHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CC
Q psy13453 20 LIYE--SFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NG 92 (764)
Q Consensus 20 ~~YS--v~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~ 92 (764)
.||| +..++..+|... +.||+++++.+|+++|+++|++. ++-+++.+.+.+++|.+.|++++++ ++
T Consensus 83 ~~~~~~~~~~~~~~g~~~---~~v~~~~~~~~~~~~l~~~i~~~----~~~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~ 155 (356)
T cd06451 83 GVFGDRWADMAERYGADV---DVVEKPWGEAVSPEEIAEALEQH----DIKAVTLTHNETSTGVLNPLEGIGALAKKHDA 155 (356)
T ss_pred CchhHHHHHHHHHhCCCe---EEeecCCCCCCCHHHHHHHHhcc----CCCEEEEeccCCCcccccCHHHHHHHHHhcCC
Confidence 3566 467888899876 99999988999999999999751 1235556778899999999999886 88
Q ss_pred Cceecccc--c------------------ccc------ceeeeecCCCccccccc--cc-cccCC---------cc-cC-
Q psy13453 93 PLKVGGVL--R------------------RVY------SSCLVPRGQKSLRTTVL--FH-FLFQH---------WQ-IP- 132 (764)
Q Consensus 93 wlHVDa~l--~------------------~~y------~s~ll~rd~~~l~~~~s--~~-~d~~d---------~t-le- 132 (764)
++++|+.. . +++ +++++.+++ ....... .. ..+.+ .. ..
T Consensus 156 ~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~l~~p~g~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (356)
T cd06451 156 LLIVDAVSSLGGEPFRMDEWGVDVAYTGSQKALGAPPGLGPIAFSER-ALERIKKKTKPKGFYFDLLLLLKYWGEGYSYP 234 (356)
T ss_pred EEEEeeehhccCccccccccCccEEEecCchhccCCCCcceeEECHH-HHHHHHhcCCCCceeecHHHHHhhhcccCCCC
Confidence 99999942 1 110 023333321 1111000 00 00000 00 00
Q ss_pred CCCcc-cHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC--ceeEE-EEeeccccccccccccCc
Q psy13453 133 LGRRF-RALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS--MGLVC-FRLKVRFWDKLDNLFGTI 208 (764)
Q Consensus 133 ~SRr~-~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~--l~iV~-Fry~P~~~~~~~~~~~~~ 208 (764)
++-.. ....++++++.+..+|+.+..++..++++++.+.+++. +++++.+|. .+.++ ++. |++
T Consensus 235 ~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-~~~----------- 301 (356)
T cd06451 235 HTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEAL-GLKLLAKPELRSPTVTAVLV-PEG----------- 301 (356)
T ss_pred CCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCCceEEEEC-CCC-----------
Confidence 00111 12466888999999999999999999999999999987 898886543 44444 333 211
Q ss_pred cCCccHHHHHHHHHHHhc-CcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 209 SFGDNDLNKAVYDRIIAR-KVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 209 ~~~~d~~n~~L~~~L~~~-G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
.+ ..++.++|.++ |+............++|+++ ++.+++++++++++.++++
T Consensus 302 ---~~--~~~~~~~L~~~~gI~~~~g~~~~~~~~iRis~-~~~~~~e~v~~~~~~l~~~ 354 (356)
T cd06451 302 ---VD--GDEVVRRLMKRYNIEIAGGLGPTAGKVFRIGH-MGEATREDVLGVLSALEEA 354 (356)
T ss_pred ---CC--HHHHHHHHHHhCCEEEecccccccCCEEEEec-CCCCCHHHHHHHHHHHHHH
Confidence 11 24688888888 87554332222235899964 4558899999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.4e-08 Score=111.42 Aligned_cols=170 Identities=14% Similarity=0.101 Sum_probs=114.7
Q ss_pred ccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCc
Q psy13453 552 FSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631 (764)
Q Consensus 552 ~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~ 631 (764)
..|..+|...++|+.+ ++++|.+. .++|++||.|+.++..+ ..+ +.
T Consensus 72 d~Yagd~s~~~LE~~v----Ae~lG~e~-----------aV~v~sGTaAl~ll~~l----~v~---------------pG 117 (460)
T PRK13237 72 EAYAGSRNFYHLEETV----QEYYGFKH-----------VVPTHQGRGAENLLSRI----AIK---------------PG 117 (460)
T ss_pred hhhcCCCcHHHHHHHH----HHHHCCCe-----------EEEeCCHHHHHHHHHHh----CCC---------------Cc
Confidence 5688999999999855 55667643 68999999998764221 011 11
Q ss_pred eEEEecCCcchhHHHH-HHhCCCceEEEec----------CCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccc-
Q psy13453 632 LVAYTSDQSNSSVEKS-AIIGDVPVRQLRS----------DDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCA- 699 (764)
Q Consensus 632 ~vi~~S~~aH~Sv~kA-a~~lGl~v~~Vp~----------d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Ga- 699 (764)
-+ ++...|++-.++ ....|....-+.+ ..+|.||+++|+++|++... ..+-+|+++..++..|.
T Consensus 118 d~--Vp~n~~f~Tt~ahI~~~Ga~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~--~~~~lV~a~itvn~~GGq 193 (460)
T PRK13237 118 QY--VPGNMYFTTTRYHQELNGGIFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGA--ENIAYICLAVTVNLAGGQ 193 (460)
T ss_pred CE--ECCccchHhhHHHHHhCCcEEEeeecccccccccCCCCCCCcCHHHHHHHhccccC--CccCceEEEEecccCCCe
Confidence 12 277778877777 4556664333321 14689999999999975321 22335556666666642
Q ss_pred ---cccHHHHHHHHHhcCCEEEEecccccccc-ccc----hhhhhh------cCCCcccEEEEcCCccCCCCcC
Q psy13453 700 ---FDNLEELGPICQEYNIWLHVDAAYAGSAL-LLP----EYAHLK------RGLEYVDSFDFNTHKWLLVNFD 759 (764)
Q Consensus 700 ---iDpl~eIa~i~~~~glwLHVDaA~Gg~~l-~~~----~~r~~l------~gie~aDSit~d~HK~l~~P~~ 759 (764)
.+++++|.++|++||+++|.|||...... +.. .|+..- +-...+|.+++|+||-+.+|.|
T Consensus 194 pvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~G 267 (460)
T PRK13237 194 PVSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNIG 267 (460)
T ss_pred eCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCCc
Confidence 46899999999999999999999875422 331 122110 1134789999999999999875
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=98.97 E-value=2e-08 Score=113.89 Aligned_cols=170 Identities=18% Similarity=0.179 Sum_probs=115.4
Q ss_pred ccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCc
Q psy13453 552 FSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631 (764)
Q Consensus 552 ~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~ 631 (764)
..|..++...++|+.+.++ +|.+ ..++|+|||+|+..++.+... . ++
T Consensus 47 ~~Y~~~~g~~~Leeaia~~----~g~~-----------~vv~t~~Gt~Al~la~~al~~----p--------------GD 93 (431)
T cd00617 47 EAYAGSKSFYDLEDAVQDL----FGFK-----------HIIPTHQGRGAENILFSILLK----P--------------GR 93 (431)
T ss_pred CccCCCCCHHHHHHHHHHH----HCCC-----------eEEEcCCHHHHHHHHHHHhCC----C--------------CC
Confidence 3588888888888876554 4553 368999999999888764311 0 12
Q ss_pred eEEEecCCcchhHHHH-HHhCCCceEEEecCC----------CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCc-cc
Q psy13453 632 LVAYTSDQSNSSVEKS-AIIGDVPVRQLRSDD----------NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGT-CA 699 (764)
Q Consensus 632 ~vi~~S~~aH~Sv~kA-a~~lGl~v~~Vp~d~----------~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~-Ga 699 (764)
+| . ...||....+ ..+.|...+.+++++ .|.||+++|+++|.+... ..+.+|+.+..++.+ |.
T Consensus 94 -~V-~-~~~~f~~~~~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~--~~~~~I~v~~p~N~~gG~ 168 (431)
T cd00617 94 -TV-P-SNMHFDTTRGHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGA--ENIPYIVLTITNNTAGGQ 168 (431)
T ss_pred -EE-c-cCCcccchHHHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcccC--CCccEEEEECCcCCCCCc
Confidence 33 3 4577765544 566899999999873 245999999999975311 124466666666665 65
Q ss_pred c---ccHHHHHHHHHhcCCEEEEecccccc-cccc----chhh-----hh-hcCCCcccEEEEcCCccCCCCcC
Q psy13453 700 F---DNLEELGPICQEYNIWLHVDAAYAGS-ALLL----PEYA-----HL-KRGLEYVDSFDFNTHKWLLVNFD 759 (764)
Q Consensus 700 i---Dpl~eIa~i~~~~glwLHVDaA~Gg~-~l~~----~~~r-----~~-l~gie~aDSit~d~HK~l~~P~~ 759 (764)
. ++|++|+++|++||+|+|.|+|+... +.+. +.++ .. ..-...+|++++++||-+.+|.|
T Consensus 169 ~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~G 242 (431)
T cd00617 169 PVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVNIG 242 (431)
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCccc
Confidence 5 57788999999999999999995532 2221 1111 11 11124689999999998888864
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-08 Score=111.88 Aligned_cols=185 Identities=19% Similarity=0.156 Sum_probs=113.5
Q ss_pred ChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHh
Q psy13453 534 SYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMI 613 (764)
Q Consensus 534 ~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~ 613 (764)
..+.+...++. .. .....|...|...++|+.+ ++++|.++ .++++||+++++.++.+...
T Consensus 12 p~~~~~~a~~~-~~-~~~~~Y~~~~~~~~L~~~l----a~~~g~~~-----------~~v~~~g~~a~~~~l~~~~~--- 71 (333)
T PRK10534 12 PSRAMLEAMMA-AP-VGDDVYGDDPTVNALQDYA----AELSGKEA-----------ALFLPTGTQANLVALLSHCE--- 71 (333)
T ss_pred CCHHHHHHHHh-cc-CCCcccCCCHHHHHHHHHH----HHHhCCCe-----------EEEeCchHHHHHHHHHHhcC---
Confidence 33455555433 22 2233344567777777755 55677754 37999999999888875311
Q ss_pred hhhccCCCCCccccccCceEEEecCCcchhHHHH--HHhCC-CceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEE
Q psy13453 614 NHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKS--AIIGD-VPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIA 690 (764)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kA--a~~lG-l~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~Vva 690 (764)
+ .-.|+++...|.+..++ +..+| +.++.++.++++.+|+++|+++|.+...++..+-+|+.
T Consensus 72 ~----------------gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l 135 (333)
T PRK10534 72 R----------------GEEYIVGQAAHNYLYEAGGAAVLGSIQPQPIDAAADGTLPLDKVAAKIKPDDIHFARTRLLSL 135 (333)
T ss_pred C----------------CCeeEEechhhhhHhcCCchHHhcCceEEeecCCCCCCCCHHHHHHhhcccCcCcccceEEEE
Confidence 1 11355777777544433 34444 67777887888999999999998653222212334444
Q ss_pred eeccCCccccccHHHH---HHHHHhcCCEEEEeccccccccc--cchhhhhhcCCCcccEEEEcCCccCCCCcC
Q psy13453 691 TLGTTGTCAFDNLEEL---GPICQEYNIWLHVDAAYAGSALL--LPEYAHLKRGLEYVDSFDFNTHKWLLVNFD 759 (764)
Q Consensus 691 taGTT~~GaiDpl~eI---a~i~~~~glwLHVDaA~Gg~~l~--~~~~r~~l~gie~aDSit~d~HK~l~~P~~ 759 (764)
. ++.+|++-|.++| +++|++|++|++||.||.-.... ........ ...|.++++++|.++.+.|
T Consensus 136 ~--np~~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~---~~~~~~~~s~SK~~~~~~G 204 (333)
T PRK10534 136 E--NTHNGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKEIT---QYCDSFTICLSKGLGTPVG 204 (333)
T ss_pred e--cCCCCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHHH---hcCCEEEEEeEcCCCCccc
Confidence 3 4556998766655 56789999999999997622110 11111111 2347777899998887743
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.5e-08 Score=113.21 Aligned_cols=174 Identities=11% Similarity=0.060 Sum_probs=122.4
Q ss_pred cccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCce
Q psy13453 553 SWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKL 632 (764)
Q Consensus 553 ~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~ 632 (764)
.|........+.+.+.+|+++++|.+-+ .....++|+|+++++..++.+. .. +..
T Consensus 61 ~Y~~~~G~~~lr~~ia~~l~~~~g~~~~------~~~~i~it~g~~~al~~~~~~l----~~---------------~gd 115 (384)
T PRK12414 61 QYAPMAGIAALREALAEKTERLYGARYD------PASEVTVIASASEGLYAAISAL----VH---------------PGD 115 (384)
T ss_pred CcCCCCCcHHHHHHHHHHHHHHhCCCCC------CCCcEEEECChHHHHHHHHHHh----cC---------------CCC
Confidence 3444455678888999999999998521 0125789999999876655432 11 122
Q ss_pred EEEecCCcchhHHHHHHhCCCceEEEecCC-CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccHHHHHH
Q psy13453 633 VAYTSDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLEELGP 708 (764)
Q Consensus 633 vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~-~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~eIa~ 708 (764)
.|++++-+|......++..|.+++.||+++ ++.+|+++|++++++. +-+|+.+..++.||.+ +++++|++
T Consensus 116 ~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~------~~~v~i~~p~NPTG~~~s~~~~~~i~~ 189 (384)
T PRK12414 116 EVIYFEPSFDSYAPIVRLQGATPVAIKLSPEDFRVNWDEVAAAITPR------TRMIIVNTPHNPSATVFSAADLARLAQ 189 (384)
T ss_pred EEEEeCCCccchHHHHHHcCCEEEEEecCccccccCHHHHHhhcCcc------cEEEEEcCCCCCCCcCCCHHHHHHHHH
Confidence 467778888888888888999999999974 5789999999988542 3466677889999997 68999999
Q ss_pred HHHhcCCEEEEeccccccccccchhhhh--hcCCCcccEEEEcCCccCCCC
Q psy13453 709 ICQEYNIWLHVDAAYAGSALLLPEYAHL--KRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 709 i~~~~glwLHVDaA~Gg~~l~~~~~r~~--l~gie~aDSit~d~HK~l~~P 757 (764)
+|++||+|+.+|.+|.-...-....... +.++..---+.-++.|.++.|
T Consensus 190 ~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~p 240 (384)
T PRK12414 190 LTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVT 240 (384)
T ss_pred HHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCc
Confidence 9999999999999998533211111010 111111125677899988655
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.7e-09 Score=115.88 Aligned_cols=229 Identities=12% Similarity=0.018 Sum_probs=140.5
Q ss_pred ccccCCcceeeeeHHHHHhhc---CCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchh
Q psy13453 11 AYPSETLSLLIYESFKATHSL---SGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNA 87 (764)
Q Consensus 11 ~~~~~~~~~~~YSv~KAa~~L---Gl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ 87 (764)
+..++. .|+|+.+++..+ |+.. +.||+++++.+|+++|+++|+++ +-+++-+..++++|.+.|+++
T Consensus 95 Vi~~~~---~h~s~~~~~~~~~~~g~~v---~~v~~~~~~~~d~~~l~~~l~~~-----~~lv~v~~~~n~tG~~~~~~~ 163 (402)
T TIGR02006 95 IITSKT---EHKAVLDTCRYLEREGFEV---TYLPPKSNGLIDLEELKAAIRDD-----TILVSIMHVNNEIGVIQDIAA 163 (402)
T ss_pred EEECCC---ccHHHHHHHHHHHhcCCEE---EEEccCCCCcCCHHHHHHhcCCC-----CEEEEEECCCcCceecccHHH
Confidence 444444 688888776554 6654 99999999999999999998653 224457889999999999999
Q ss_pred hhc-----CCCceecccc--------------------ccc----c-ceeeeecCCCccccccccccccCCc--ccC-CC
Q psy13453 88 PVS-----NGPLKVGGVL--------------------RRV----Y-SSCLVPRGQKSLRTTVLFHFLFQHW--QIP-LG 134 (764)
Q Consensus 88 ia~-----~~wlHVDa~l--------------------~~~----y-~s~ll~rd~~~l~~~~s~~~d~~d~--tle-~S 134 (764)
|++ ++|+|||++. .++ . +++++.+++....... ....+++ ..+ ++
T Consensus 164 I~~l~~~~g~~livD~a~a~g~~~~~~~~~~~D~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~--~~~g~~~~~~~~~gt 241 (402)
T TIGR02006 164 IGEICRERKVFFHVDAAQSVGKIPINVNELKVDLMSISGHKIYGPKGIGALYVRRKPRVRLEA--LIHGGGHERGMRSGT 241 (402)
T ss_pred HHHHHHHcCCEEEEEcchhcCCcccCccccCCCEEEEehhhhcCCCceEEEEEccCCCCCCCc--eecCCCccCCccCCC
Confidence 886 8899999942 111 1 1355555432211100 0000000 111 22
Q ss_pred Ccc-cHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC--c---eeEEEEeeccccccccccccCc
Q psy13453 135 RRF-RALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS--M---GLVCFRLKVRFWDKLDNLFGTI 208 (764)
Q Consensus 135 Rr~-~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~--l---~iV~Fry~P~~~~~~~~~~~~~ 208 (764)
-.. ..+.+-.+++.+ .+++.++.++.-.+++++.+.|++.++++++++++ . .+|+|+..+
T Consensus 242 ~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~~~~v~f~~~~------------- 307 (402)
T TIGR02006 242 LPTHQIVGMGEAFRIA-KEEMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRVPGNLNVSFNYVE------------- 307 (402)
T ss_pred ccHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEEeCcC-------------
Confidence 212 223444555544 46788888999999999999999999999886543 2 246665321
Q ss_pred cCCccHHHHHHHHHHHhcCcEEEEecee--------------CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy13453 209 SFGDNDLNKAVYDRIIARKVIYIVKGSF--------------QDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVL 271 (764)
Q Consensus 209 ~~~~d~~n~~L~~~L~~~G~~~vs~t~l--------------~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~ 271 (764)
.+.+..++.+.....|... +.... ....++|+++ .+.+|++||+.+++.|+++.+.+.
T Consensus 308 ---~~~~~~~l~~i~v~~G~~c-~~~~~~~~~~l~~lg~~~~~~~~~vR~S~-~~~~t~edid~l~~~l~~~~~~~~ 379 (402)
T TIGR02006 308 ---GESLIMALKDLAVSSGSAC-TSASLEPSYVLRALGINDELAHSSIRFTI-GRFTTEEEIDYAVKLVKSAIDKLR 379 (402)
T ss_pred ---HHHHHHhcCCEEEechhhc-CCCCCCccHHHHHcCCChhhcCceEEEEe-cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1122222211111222221 11100 0125799976 566899999999999999887753
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.1e-08 Score=109.30 Aligned_cols=222 Identities=10% Similarity=-0.014 Sum_probs=140.6
Q ss_pred eeeeHHHHHhh---cCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----C
Q psy13453 20 LIYESFKATHS---LSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----N 91 (764)
Q Consensus 20 ~~YSv~KAa~~---LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~ 91 (764)
.|.|+.+.... .|+.. +.||+++++++|+++|+++|+++ +-+++-+..++++|.+.|+++|++ +
T Consensus 95 ~~~s~~~~~~~~~~~G~~v---~~v~~~~~g~~~~~~l~~~i~~~-----~~lv~i~~~~n~tG~~~~~~~I~~l~~~~g 166 (379)
T TIGR03402 95 EHPAVLSLCQHLEKQGYKV---TYLPVDEEGRLDLEELRAAITDD-----TALVSVMWANNETGTIFPIEEIGEIAKERG 166 (379)
T ss_pred ccHHHHHHHHHHHHcCCEE---EEEccCCCCcCCHHHHHHhcCCC-----cEEEEEEcccCCeeecccHHHHHHHHHHcC
Confidence 46666544443 47665 99999989999999999999753 224456778889999999999886 7
Q ss_pred CCceeccccc--------------------ccc----c-eeeeecCCCccccccccccccCCcccC-CCCcccH-HHHHH
Q psy13453 92 GPLKVGGVLR--------------------RVY----S-SCLVPRGQKSLRTTVLFHFLFQHWQIP-LGRRFRA-LKLWM 144 (764)
Q Consensus 92 ~wlHVDa~l~--------------------~~y----~-s~ll~rd~~~l~~~~s~~~d~~d~tle-~SRr~~A-LklWa 144 (764)
+++|||+... +++ + ++++.+....+.-.+.. .......+ ++-...+ +.+-+
T Consensus 167 ~~vivD~~~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G~g~l~v~~~~~~~p~~~g--~~~~~~~~~gt~~~~~~~~l~~ 244 (379)
T TIGR03402 167 ALFHTDAVQAVGKIPIDLKEMNIDMLSLSGHKLHGPKGVGALYIRKGTRFRPLLRG--GHQERGRRAGTENVPGIVGLGK 244 (379)
T ss_pred CEEEEECcccccccccCcccCCCCEEEEcHHHcCCCCceEEEEECCCCCCCCcccC--CccCCCcCCCCccHHHHHHHHH
Confidence 8999999421 111 1 34444433211111000 00000011 1111112 23334
Q ss_pred HHHHccHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEeCCCC---ceeEEEEeeccccccccccccCccCCccHHHHHHH
Q psy13453 145 TLRSYGLKGLQAYLRKHISLAKKFADLVEQ-DDRFELVCPPS---MGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVY 220 (764)
Q Consensus 145 tL~~lG~eGy~~~i~~~i~lA~~l~~~I~~-~p~~ell~~P~---l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~ 220 (764)
+++ +..+++.++.++.-++++++.+.+++ ++++++.+++. -+++.|.+.. .+ ..++.
T Consensus 245 al~-~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~--~~~~~ 305 (379)
T TIGR03402 245 AAE-LATEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEY----------------IE--GEAIL 305 (379)
T ss_pred HHH-HHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEecC----------------CC--HHHHH
Confidence 444 34667888888999999999999996 89999988654 2477776531 11 13677
Q ss_pred HHHHhcCcEEEEecee-------------------CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy13453 221 DRIIARKVIYIVKGSF-------------------QDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVL 271 (764)
Q Consensus 221 ~~L~~~G~~~vs~t~l-------------------~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~ 271 (764)
+.|.+.|....+...- .....+|++ .+..+|++||+.+++.|+++.+.+.
T Consensus 306 ~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S-~~~~~t~~di~~~~~~l~~~~~~~~ 374 (379)
T TIGR03402 306 LLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFS-LSRYNTEEDIDYVLEVLPPIIARLR 374 (379)
T ss_pred HhhccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEE-cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 7777777654432210 012579996 5777889999999999999877654
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.8e-08 Score=112.08 Aligned_cols=163 Identities=12% Similarity=0.013 Sum_probs=113.0
Q ss_pred chHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEec
Q psy13453 558 PACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTS 637 (764)
Q Consensus 558 p~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S 637 (764)
.....+-.++.+++++++|.+. .+++++|+++++.++.+.. . +...|+++
T Consensus 74 ~g~~~l~~~l~~~l~~~~g~~~-----------~i~~~sG~~a~~~a~~~~~----~---------------~gd~vi~~ 123 (385)
T TIGR01825 74 AGTLRLHEELEEKLAKFKKTEA-----------ALVFQSGFNTNQGVLSALL----R---------------KGDIVLSD 123 (385)
T ss_pred cCCcHHHHHHHHHHHHHhCCCc-----------EEEECcHHHHHHHHHHHhC----C---------------CCCEEEEE
Confidence 3445677788889999988543 2455556888887665431 1 11257788
Q ss_pred CCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEE
Q psy13453 638 DQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWL 717 (764)
Q Consensus 638 ~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwL 717 (764)
...|.+...++...|..+..++ .+|++++++.+.+... ..+.+|+...-.+.+|.+.|+++|+++|++||+|+
T Consensus 124 ~~~~~~~~~~~~~~g~~~~~~~-----~~d~~~l~~~l~~~~~--~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~~~~~l 196 (385)
T TIGR01825 124 ELNHASIIDGLRLTKATKKIYK-----HADMDDLDRVLRENPS--YGKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVT 196 (385)
T ss_pred ccccHHHHHHHHhcCCceEEeC-----CCCHHHHHHHHHhhcc--CCCeEEEEecCCcCCCCccCHHHHHHHHHHhCCEE
Confidence 8999999988888888766553 5889999998876432 23456655555678899999999999999999999
Q ss_pred EEeccccccccccc-hhhhhhcCC-CcccEEEEcCCccCCCC
Q psy13453 718 HVDAAYAGSALLLP-EYAHLKRGL-EYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 718 HVDaA~Gg~~l~~~-~~r~~l~gi-e~aDSit~d~HK~l~~P 757 (764)
++|.+|+.+.+... ......-++ ...|-+..++||+++.+
T Consensus 197 i~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 238 (385)
T TIGR01825 197 YVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIGVV 238 (385)
T ss_pred EEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHhhcC
Confidence 99999976543210 000000122 24577889999999764
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.5e-08 Score=112.22 Aligned_cols=219 Identities=11% Similarity=0.060 Sum_probs=148.5
Q ss_pred eHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCceec
Q psy13453 23 ESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKVG 97 (764)
Q Consensus 23 Sv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHVD 97 (764)
.+.+.++..|+.. +.||+++++++|+++|+++|+++ +-+++-+..+.++|.+-|++++++ +++++||
T Consensus 129 ~~~~~~~~~g~~v---~~v~~~~~~~~d~~~l~~~i~~~-----t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD 200 (406)
T PRK09295 129 PWQMLCARVGAEL---RVIPLNPDGTLQLETLPALFDER-----TRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVD 200 (406)
T ss_pred HHHHHHHHcCcEE---EEEecCCCCCCCHHHHHHhcCCC-----cEEEEEecchhcccccCCHHHHHHHHHHcCCEEEEE
Confidence 4567788889877 99999999999999999999653 224457789999999999999876 7899999
Q ss_pred ccc--------------------ccc-c---c-eeeeecCCC--ccccccc---c--cccc-CC-------cccC-CCCc
Q psy13453 98 GVL--------------------RRV-Y---S-SCLVPRGQK--SLRTTVL---F--HFLF-QH-------WQIP-LGRR 136 (764)
Q Consensus 98 a~l--------------------~~~-y---~-s~ll~rd~~--~l~~~~s---~--~~d~-~d-------~tle-~SRr 136 (764)
++. .++ + + ++++.+.+. .+...+. . ..++ .. +.++ |+..
T Consensus 201 ~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~ 280 (406)
T PRK09295 201 GAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPN 280 (406)
T ss_pred cccccCccccCchhcCCCEEEeehhhccCCCCcEEEEEchHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCcc
Confidence 942 122 1 1 344444321 0110000 0 0000 00 1122 2342
Q ss_pred -ccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC-CceeEEEEeeccccccccccccCccCCccH
Q psy13453 137 -FRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPP-SMGLVCFRLKVRFWDKLDNLFGTISFGDND 214 (764)
Q Consensus 137 -~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P-~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~ 214 (764)
...+.++++++.+-..|+.++.++.-++++++.+.|+++++++++++. ..++|+|.+.. .+
T Consensus 281 ~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~iv~~~~~~----------------~~- 343 (406)
T PRK09295 281 TGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGK----------------HH- 343 (406)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCceEEEEEECC----------------cC-
Confidence 234588999999888889888899999999999999999999998752 36799997531 11
Q ss_pred HHHHHHHHHHhcCcEEEEec--------eeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13453 215 LNKAVYDRIIARKVIYIVKG--------SFQDRLFMRFAICSSQTEESDVQLGWNEIRTATE 268 (764)
Q Consensus 215 ~n~~L~~~L~~~G~~~vs~t--------~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~ 268 (764)
...+.+.|.+.|....+.. .+..+.++|++ .+..++++|++.+++.|+++.+
T Consensus 344 -~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS-~~~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 344 -AYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRAS-LAMYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred -HHHHHHHHHhCCeEEeccccchHHHHHHHCCCCEEEEE-ccCCCCHHHHHHHHHHHHHHHH
Confidence 1356677777886543321 01112479996 5577899999999999998754
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.3e-08 Score=115.44 Aligned_cols=203 Identities=15% Similarity=0.131 Sum_probs=127.4
Q ss_pred CCCCCCccccccCCCCChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCCh
Q psy13453 518 THWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTA 597 (764)
Q Consensus 518 ~~~~~P~~~~~~~~~~~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGg 597 (764)
.++.+-.|+|+-...+.....+.+.+..+--....... .-..+....++.+.+++++|.++ .++.++|
T Consensus 103 ~n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~-~~g~~~~~~ele~~lA~~~g~~~-----------ai~~~~G 170 (489)
T PLN02483 103 LNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSSRV-DGGTTKLHRELEELVARFVGKPA-----------AIVFGMG 170 (489)
T ss_pred EEeecCCccCcCCCCHHHHHHHHHHHHHhCCCCCcccc-ccCCcHHHHHHHHHHHHHhCCCc-----------EEEECCH
Confidence 35778889998754444444455555443211111110 01123444555667788888543 3555567
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHH
Q psy13453 598 SEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKE 677 (764)
Q Consensus 598 TeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~ 677 (764)
+.+|+.++.+. .. +...|++++.+|.|+..+++..|++++.+|.+ |+++|++.+++
T Consensus 171 ~~an~~~i~al----~~---------------~Gd~Vi~d~~~h~s~~~~~~~~Ga~v~~~~~~-----d~~~le~~l~~ 226 (489)
T PLN02483 171 YATNSTIIPAL----IG---------------KGGLIISDSLNHNSIVNGARGSGATIRVFQHN-----TPSHLEEVLRE 226 (489)
T ss_pred HHHHHHHHHHh----CC---------------CCCEEEEcchhhHHHHHHHHHcCCeEEEEeCC-----CHHHHHHHHHh
Confidence 77787554431 11 12357899999999999999999999999864 57888888775
Q ss_pred hhhcCC----Cc--eEEEEeecc-CCccccccHHHHHHHHHhcCCEEEEeccccccccccchhh--hhhcCC--CcccEE
Q psy13453 678 DLAKGL----IP--CCLIATLGT-TGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYA--HLKRGL--EYVDSF 746 (764)
Q Consensus 678 ~~~~G~----~p--~~VvataGT-T~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r--~~l~gi--e~aDSi 746 (764)
....+. .| -+++.+-|. +..|.+.++++|+++|++||+|+++|.||+.+.+ -+..+ ....++ ..+|-+
T Consensus 227 ~i~~~~p~t~~p~~k~livve~v~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~-G~~G~g~~~~~~v~~~~~dI~ 305 (489)
T PLN02483 227 QIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAV-GKTGRGVCELLGVDPADVDIM 305 (489)
T ss_pred hhhccccccccCCceEEEEECCCCCCCCcccCHHHHHHHHHHcCCEEEEECcCccCcc-CCCCCchHHhcCCCcccCcEE
Confidence 432221 11 233334443 6789999999999999999999999999975432 11111 011122 346888
Q ss_pred EEcCCccCCCC
Q psy13453 747 DFNTHKWLLVN 757 (764)
Q Consensus 747 t~d~HK~l~~P 757 (764)
..++||.++.+
T Consensus 306 ~~SfSKs~g~~ 316 (489)
T PLN02483 306 MGTFTKSFGSC 316 (489)
T ss_pred EEecchhcccC
Confidence 99999998753
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.2e-08 Score=108.40 Aligned_cols=158 Identities=18% Similarity=0.098 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcch
Q psy13453 563 LEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNS 642 (764)
Q Consensus 563 lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~ 642 (764)
+..++.+.+++++|.+. .+++++|+++++.++.+. .. ++..|++++.+|.
T Consensus 62 ~~~~l~~~la~~~~~~~-----------~i~~~~G~~~~~~~l~~~----~~---------------~gd~v~~~~~~~~ 111 (360)
T TIGR00858 62 LHEELEEELAEWKGTEA-----------ALLFSSGYLANVGVISAL----VG---------------KGDLILSDALNHA 111 (360)
T ss_pred HHHHHHHHHHHHhCCCC-----------EEEECchHHHHHHHHHHh----CC---------------CCCEEEEEccccH
Confidence 34445566677666432 466666788877655432 11 1225778889999
Q ss_pred hHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEecc
Q psy13453 643 SVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAA 722 (764)
Q Consensus 643 Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA 722 (764)
+...++...|.+++.++. +|+++|++.+++.. +..+.+|+.....+.+|.+.|+++|.++|+++|+++++|.+
T Consensus 112 ~~~~~~~~~g~~~~~~~~-----~d~~~l~~~~~~~~--~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~li~De~ 184 (360)
T TIGR00858 112 SLIDGCRLSGARVRRYRH-----NDVEHLERLLEKNR--GERRKLIVTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDA 184 (360)
T ss_pred HHHHHHHhcCCceEEecC-----CCHHHHHHHHHHcc--cCCCeEEEEeCCccCCCCCcCHHHHHHHHHHcCcEEEEECc
Confidence 999999999999888763 68999999986532 11244666555667899999999999999999999999999
Q ss_pred ccccccccc-hhhhhhcCC--CcccEEEEcCCccCCCC
Q psy13453 723 YAGSALLLP-EYAHLKRGL--EYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 723 ~Gg~~l~~~-~~r~~l~gi--e~aDSit~d~HK~l~~P 757 (764)
|+.+.+... .......++ ...|-+..++||+++.+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~ 222 (360)
T TIGR00858 185 HGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSY 222 (360)
T ss_pred ccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhcc
Confidence 975432111 000111223 13578888999998753
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-08 Score=115.54 Aligned_cols=151 Identities=12% Similarity=0.062 Sum_probs=110.8
Q ss_pred CchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEe
Q psy13453 557 SPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYT 636 (764)
Q Consensus 557 sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~ 636 (764)
.|....+|+ .++++.|.+. .+++++|+.|+..++.+... +...|++
T Consensus 62 ~p~~~~le~----~lA~l~g~~~-----------al~~~SG~~Ai~~al~all~-------------------pGd~VIv 107 (427)
T PRK05994 62 NPTNAVLEE----RVAALEGGTA-----------ALAVASGHAAQFLVFHTLLQ-------------------PGDEFIA 107 (427)
T ss_pred CccHHHHHH----HHHHHhCCCc-----------EEEEcCHHHHHHHHHHHHhC-------------------CCCEEEE
Confidence 455555555 6677777643 68899999999877765411 1124667
Q ss_pred cCCcchhHHH----HHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHh
Q psy13453 637 SDQSNSSVEK----SAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQE 712 (764)
Q Consensus 637 S~~aH~Sv~k----Aa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~ 712 (764)
+...|.+..+ .+...|+.++.++++ |+++++++|++. +-+|+....++.+|.+-|+++|+++|++
T Consensus 108 ~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~ai~~~------tklV~vesp~NptG~v~dl~~I~~la~~ 176 (427)
T PRK05994 108 ARKLYGGSINQFGHAFKSFGWQVRWADAD-----DPASFERAITPR------TKAIFIESIANPGGTVTDIAAIAEVAHR 176 (427)
T ss_pred ecCcchhHHHHHHHHHHhcCcEEEEECCC-----CHHHHHHhcCcC------CeEEEEECCCCCCCeecCHHHHHHHHHH
Confidence 7777765433 356678888888764 789999988653 3477778888999999999999999999
Q ss_pred cCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcC
Q psy13453 713 YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD 759 (764)
Q Consensus 713 ~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~ 759 (764)
+|++++||.+|+.+...-| .- -.+|-++.++|||++.+-+
T Consensus 177 ~gi~livD~a~a~~~~~~p----l~---~gaDivv~S~tK~lgg~~~ 216 (427)
T PRK05994 177 AGLPLIVDNTLASPYLIRP----IE---HGADIVVHSLTKFLGGHGN 216 (427)
T ss_pred cCCEEEEECCccccccCCc----cc---cCCcEEEEcCccccCCCCC
Confidence 9999999999986543222 11 1469999999999987653
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.2e-08 Score=110.61 Aligned_cols=179 Identities=13% Similarity=0.030 Sum_probs=125.4
Q ss_pred cccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCC-cEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCc
Q psy13453 553 SWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPG-GGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631 (764)
Q Consensus 553 ~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~-~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~ 631 (764)
.|.......++.+.+.+|+.+..|++-+ .. ..++|+|+++++..++.+. .. +.
T Consensus 58 ~Y~~~~G~~~lr~~ia~~~~~~~g~~~~-------~~~~i~~t~G~~~al~~~~~~~----~~---------------~g 111 (387)
T PRK08912 58 QYPPMMGLPELRQAVAAHYARFQGLDLD-------PETEVMVTSGATEALAAALLAL----VE---------------PG 111 (387)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHhCCCCC-------CcccEEEeCCcHHHHHHHHHHh----cC---------------CC
Confidence 3444444567888888898888786432 12 5789999999875554422 11 12
Q ss_pred eEEEecCCcchhHHHHHHhCCCceEEEecCC-CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc---HHHHH
Q psy13453 632 LVAYTSDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN---LEELG 707 (764)
Q Consensus 632 ~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~-~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp---l~eIa 707 (764)
..|++..-+|.....++...|.+++.+|+++ ++.+|+++|++.+... +-+|+.+..++.||.+-+ +++|.
T Consensus 112 d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~v~l~~p~NPtG~~~s~~~~~~i~ 185 (387)
T PRK08912 112 DEVVLFQPLYDAYLPLIRRAGGVPRLVRLEPPHWRLPRAALAAAFSPR------TKAVLLNNPLNPAGKVFPREELALLA 185 (387)
T ss_pred CEEEEeCCCchhhHHHHHHcCCEEEEEecCcccCcCCHHHHHHHhCcc------ceEEEEeCCCCCcCcccCHHHHHHHH
Confidence 2577788889999999999999999999974 6789999999987542 336667788999998854 77799
Q ss_pred HHHHhcCCEEEEeccccccccccchhhh--hhcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 708 PICQEYNIWLHVDAAYAGSALLLPEYAH--LKRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 708 ~i~~~~glwLHVDaA~Gg~~l~~~~~r~--~l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
++|++|++|+++|.+|+....--..+.. .+.++..-+-+..+++|.++.| .-+|.+
T Consensus 186 ~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~ 244 (387)
T PRK08912 186 EFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFV 244 (387)
T ss_pred HHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcCceeEEE
Confidence 9999999999999999754321111111 1223323357889999988744 235554
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-08 Score=116.01 Aligned_cols=140 Identities=14% Similarity=0.111 Sum_probs=103.4
Q ss_pred CchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEe
Q psy13453 557 SPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYT 636 (764)
Q Consensus 557 sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~ 636 (764)
++...++|+ .+++++|.+ ..++|++||++++.++.+....+..+. +..++-.|++
T Consensus 62 G~~~~~fe~----~lA~~~g~~-----------~~v~~~sGt~al~~aL~al~~~~~~~~----------~~~pGd~VIv 116 (438)
T PRK15407 62 GRFNDAFEK----KLAEFLGVR-----------YALLVNSGSSANLLAFSALTSPKLGDR----------ALKPGDEVIT 116 (438)
T ss_pred ChhHHHHHH----HHHHHhCCC-----------eEEEECCHHHHHHHHHHHHhhcccccc----------CCCCCCEEEE
Confidence 344455555 556666653 368999999999998876543322110 1122346889
Q ss_pred cCCcchhHHHHHHhCCCceEEEecC-CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCC
Q psy13453 637 SDQSNSSVEKSAIIGDVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNI 715 (764)
Q Consensus 637 S~~aH~Sv~kAa~~lGl~v~~Vp~d-~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~gl 715 (764)
+..+|.+...++...|..++.++++ +++.+|+++++++|.+.. -+|+.+. ..|...++++|.++|++||+
T Consensus 117 ~~~t~~a~~~~v~~~G~~pv~vdvd~~~~~id~~~le~~i~~~t------kaVi~~~---~~G~p~dl~~I~~la~~~gi 187 (438)
T PRK15407 117 VAAGFPTTVNPIIQNGLVPVFVDVELPTYNIDASLLEAAVSPKT------KAIMIAH---TLGNPFDLAAVKAFCDKHNL 187 (438)
T ss_pred CCCCcHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHcCcCC------eEEEEeC---CCCChhhHHHHHHHHHHCCC
Confidence 9999999999999999999999987 578999999999986532 2555543 35667799999999999999
Q ss_pred EEEEecccccccccc
Q psy13453 716 WLHVDAAYAGSALLL 730 (764)
Q Consensus 716 wLHVDaA~Gg~~l~~ 730 (764)
++++|+||+.+....
T Consensus 188 ~vIeDaa~a~G~~~~ 202 (438)
T PRK15407 188 WLIEDNCDALGSTYD 202 (438)
T ss_pred EEEEECccchhhhcC
Confidence 999999998776553
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.4e-08 Score=114.12 Aligned_cols=152 Identities=14% Similarity=0.105 Sum_probs=110.6
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
..|....+|+ .+++++|.+. .+++++|+.++..++.+.. . +.-.|+
T Consensus 57 ~~p~~~~le~----~lA~l~g~~~-----------av~~~sG~~Ai~~~l~al~----~---------------~Gd~Vi 102 (391)
T TIGR01328 57 GNPTVSNLEG----RIAFLEGTEA-----------AVATSSGMGAIAATLLTIL----K---------------AGDHLI 102 (391)
T ss_pred CCchHHHHHH----HHHHHhCCCc-----------EEEECCHHHHHHHHHHHHh----C---------------CCCEEE
Confidence 4566666776 6777777643 5889999998877664431 1 112356
Q ss_pred ecCCcch----hHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHH
Q psy13453 636 TSDQSNS----SVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQ 711 (764)
Q Consensus 636 ~S~~aH~----Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~ 711 (764)
++...|. .+...+...|+.++.++.+ |+++++++|.+. +-+|+....++.+|.+-|+++|+++|+
T Consensus 103 ~~~~~y~~t~~~~~~~~~~~G~~~~~vd~~-----d~e~l~~~i~~~------tklV~le~p~Np~G~v~dl~~I~~la~ 171 (391)
T TIGR01328 103 SDECLYGCTFALLEHALTKFGIQVDFINMA-----IPEEVKAHIKDN------TKIVYFETPANPTMKLIDMERVCRDAH 171 (391)
T ss_pred EecCcchHHHHHHHHHHhcCCeEEEEECCC-----CHHHHHHhhccC------CeEEEEECCCCCCCcccCHHHHHHHHH
Confidence 6666553 3445566688888888765 789999888653 347777788889999999999999999
Q ss_pred hcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcC
Q psy13453 712 EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD 759 (764)
Q Consensus 712 ~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~ 759 (764)
++|++++||+||+.+....+ .- ..+|.++.+++|+++.+-+
T Consensus 172 ~~gi~livD~a~a~~~~~~~----~~---~g~Divv~S~sK~lgg~g~ 212 (391)
T TIGR01328 172 SQGVKVIVDNTFATPMLTNP----VA---LGVDVVVHSATKYIGGHGD 212 (391)
T ss_pred HcCCEEEEECCCchhccCCc----hh---cCCCEEEccccccccCCCC
Confidence 99999999999986543221 11 2479999999999997764
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.9e-09 Score=112.98 Aligned_cols=162 Identities=15% Similarity=0.072 Sum_probs=113.3
Q ss_pred HHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHH
Q psy13453 566 LVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVE 645 (764)
Q Consensus 566 ~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~ 645 (764)
++.+.+++++|.++ ...++|+|+|+++..++.+.. . ++..|++++-++....
T Consensus 58 ~lr~~ia~~~~~~~---------~~i~~~~G~~~~l~~~~~~l~----~---------------~gd~v~~~~p~y~~~~ 109 (346)
T TIGR01141 58 ELKQALADYYGVDP---------EQILLGNGSDEIIELLIRAFL----E---------------PGDAVLVPPPTYSMYE 109 (346)
T ss_pred HHHHHHHHHhCcCh---------HHEEEcCCHHHHHHHHHHHhc----C---------------CCCEEEEcCCCHHHHH
Confidence 46677788888654 257899999998755544321 1 1124666666666666
Q ss_pred HHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhc--CCEEEEeccc
Q psy13453 646 KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEY--NIWLHVDAAY 723 (764)
Q Consensus 646 kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~--glwLHVDaA~ 723 (764)
..+...|++++.+|++++|.+|+++|++.+.+. +-+|+.+..++.+|.+-|++++.++|+.+ |+++++|.+|
T Consensus 110 ~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y 183 (346)
T TIGR01141 110 ISAKIHGAEVVKVPLDEDGQLDLEDILVAIDDK------PKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVVDEAY 183 (346)
T ss_pred HHHHHcCCeEEEeccCCCCCCCHHHHHHhcCCC------CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECch
Confidence 678889999999999988999999999976432 34777788899999999999999999887 9999999999
Q ss_pred cccccccchhhhhhcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 724 AGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 724 Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
+.... -+.........+ .+-+..+++|+++.| ..+|.+
T Consensus 184 ~~~~~-~~~~~~~~~~~~-~~i~~~S~sK~~g~~G~r~G~~ 222 (346)
T TIGR01141 184 GEFSG-EPSTLPLLAEYP-NLIVLRTLSKAFGLAGLRIGYA 222 (346)
T ss_pred hhhcC-CccHHHHHhhCC-CEEEEehhhHhhhchhhhceee
Confidence 85321 111111222221 134467899999654 336665
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.4e-08 Score=115.14 Aligned_cols=150 Identities=15% Similarity=0.149 Sum_probs=108.1
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
..|...++| +.+++++|.+ ..+++++|++|+..++.+... + .-.|+
T Consensus 55 ~~p~~~~le----~~lA~l~g~~-----------~~v~~~sG~~Ai~~al~~l~~---~----------------Gd~Vl 100 (418)
T TIGR01326 55 MNPTTDVLE----QRIAALEGGV-----------AALAVASGQAAITYAILNLAQ---A----------------GDNIV 100 (418)
T ss_pred CChhHHHHH----HHHHHHhCCC-----------eEEEEccHHHHHHHHHHHHhC---C----------------CCEEE
Confidence 345554444 5678888763 368999999998888765421 1 11355
Q ss_pred ecCCcchh----HHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHH
Q psy13453 636 TSDQSNSS----VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQ 711 (764)
Q Consensus 636 ~S~~aH~S----v~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~ 711 (764)
++...|.. +.+.+...|+.++.++.+ |+++|+++|++. +-+|+....++.+|.+-|+++|+++|+
T Consensus 101 ~~~~~y~~t~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~~l~~~------t~~V~le~p~NPtg~v~dl~~I~~la~ 169 (418)
T TIGR01326 101 SSSYLYGGTYNLFKHTLKRLGIEVRFVDPD-----DPEEFEKAIDEN------TKAVFAETIGNPAINVPDIEAIAEVAH 169 (418)
T ss_pred EECCCcHHHHHHHHHHHHHcCcEEEEECCC-----CHHHHHHhcCcC------CeEEEEECCCCCCCeecCHHHHHHHHH
Confidence 66665532 345567789988888753 789999988653 336666777888999999999999999
Q ss_pred hcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 712 EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 712 ~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
++|++++||.+|+.+....+ .- ..+|.++.++||+++.+
T Consensus 170 ~~~i~livD~t~~~~~~~~~----l~---~g~Divv~S~sK~l~g~ 208 (418)
T TIGR01326 170 AHGVPLIVDNTFATPYLCRP----ID---HGADIVVHSATKYIGGH 208 (418)
T ss_pred HcCCEEEEECCCchhhcCCc----hh---cCCeEEEECccccccCC
Confidence 99999999999986532222 11 13699999999999864
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.9e-08 Score=112.99 Aligned_cols=154 Identities=16% Similarity=0.150 Sum_probs=109.2
Q ss_pred CchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEe
Q psy13453 557 SPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYT 636 (764)
Q Consensus 557 sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~ 636 (764)
.|...++|+ .+++++|.+. .+++++|+.|+..++.+. .. +.-.|++
T Consensus 62 ~p~~~~le~----~lA~l~g~~~-----------av~~~sG~~Ai~~al~al----~~---------------~Gd~Vl~ 107 (389)
T PRK05968 62 NPTVRAFEE----MLAKLEGAED-----------ARGFASGMAAISSTVLSF----VE---------------PGDRIVA 107 (389)
T ss_pred ChhHHHHHH----HHHHHhCCCc-----------EEEECCHHHHHHHHHHHH----hC---------------CCCEEEE
Confidence 455555664 6778888753 467788888887776532 11 1124666
Q ss_pred cCCcchhH----HHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHh
Q psy13453 637 SDQSNSSV----EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQE 712 (764)
Q Consensus 637 S~~aH~Sv----~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~ 712 (764)
+...|.+. .+.+...|++++.++.+ |++++++++ +. +-+|++...|+.++.+.|+++|+++|++
T Consensus 108 ~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~~i-~~------tklV~ie~pt~~~~~~~dl~~i~~la~~ 175 (389)
T PRK05968 108 VRHVYPDAFRLFETILKRMGVEVDYVDGR-----DEEAVAKAL-PG------AKLLYLESPTSWVFELQDVAALAALAKR 175 (389)
T ss_pred eCCCchHHHHHHHHHHHHcCceEEEeCCC-----CHHHHHHhc-cc------CCEEEEECCCCCCCcHHHHHHHHHHHHH
Confidence 77777653 35566789998888654 789998887 22 2366667788888999999999999999
Q ss_pred cCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcC--ceee
Q psy13453 713 YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD--CSAM 763 (764)
Q Consensus 713 ~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~--~g~l 763 (764)
||++++||++|+.+...-| ...| +|.+..++||+++.|-+ .|++
T Consensus 176 ~gi~vivD~a~a~~~~~~p----~~~g---~Divv~S~tK~l~g~~~~~gG~i 221 (389)
T PRK05968 176 HGVVTMIDNSWASPVFQRP----ITLG---VDLVIHSASKYLGGHSDTVAGVV 221 (389)
T ss_pred cCCEEEEECCCcchhccCc----hhcC---CcEEEeeccccccCCCCeEEEEE
Confidence 9999999999977543222 1123 59999999999998754 4554
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.5e-08 Score=110.55 Aligned_cols=157 Identities=15% Similarity=0.122 Sum_probs=113.1
Q ss_pred HHHHHHhhc-ccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhcc
Q psy13453 540 GDMLSGAFG-LIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQS 618 (764)
Q Consensus 540 ad~l~~~lN-~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~ 618 (764)
.+.+...++ .....|........+-+.+.+++++.+|.+.+ .....++|+|++++...++.+. ..
T Consensus 46 ~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~------~~~~i~~t~G~~~~l~~~~~~~----~~---- 111 (389)
T PRK05957 46 IEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELN------NEQAIVVTAGSNMAFMNAILAI----TD---- 111 (389)
T ss_pred HHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCC------CCCeEEEeCChHHHHHHHHHHh----cC----
Confidence 344444432 22234544555567778888999999887421 0135789999999876665432 11
Q ss_pred CCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcc
Q psy13453 619 KNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTC 698 (764)
Q Consensus 619 ~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~G 698 (764)
++..|+++.-.+.....+++..|+.++.+|.++++.+|+++|++.|++. +-+|+.+..++.+|
T Consensus 112 -----------~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~------~klv~~~~p~NPtG 174 (389)
T PRK05957 112 -----------PGDEIILNTPYYFNHEMAITMAGCQPILVPTDDNYQLQPEAIEQAITPK------TRAIVTISPNNPTG 174 (389)
T ss_pred -----------CCCEEEEeCCCCcCHHHHHHhcCCEEEEeecCCCCCcCHHHHHHhcCcC------ceEEEEeCCCCCCC
Confidence 1124666766666666667788999999999888899999999998643 33667777899999
Q ss_pred cccc---HHHHHHHHHhcCCEEEEeccccccc
Q psy13453 699 AFDN---LEELGPICQEYNIWLHVDAAYAGSA 727 (764)
Q Consensus 699 aiDp---l~eIa~i~~~~glwLHVDaA~Gg~~ 727 (764)
.+-+ +++|+++|++||+++.+|.+|+...
T Consensus 175 ~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~ 206 (389)
T PRK05957 175 VVYPEALLRAVNQICAEHGIYHISDEAYEYFT 206 (389)
T ss_pred cCcCHHHHHHHHHHHHHcCcEEEEeccchhcc
Confidence 9876 8889999999999999999998653
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.4e-08 Score=115.51 Aligned_cols=151 Identities=17% Similarity=0.102 Sum_probs=108.8
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
..|....+|+ .++++.|.+. .+++++|+.|+..++.+.. . ++-.|+
T Consensus 67 ~~p~~~~Le~----~lA~l~g~~~-----------av~~sSG~aAi~~al~all----~---------------~Gd~Vv 112 (436)
T PRK07812 67 MNPTQDVVEQ----RIAALEGGVA-----------ALLLASGQAAETFAILNLA----G---------------AGDHIV 112 (436)
T ss_pred CCchHHHHHH----HHHHHhCCCe-----------EEEEccHHHHHHHHHHHHh----C---------------CCCEEE
Confidence 3466666665 6677777643 6899999999877775331 1 112466
Q ss_pred ecCCcchhHHHH----HHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHH
Q psy13453 636 TSDQSNSSVEKS----AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQ 711 (764)
Q Consensus 636 ~S~~aH~Sv~kA----a~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~ 711 (764)
++...|...... +...|+.++.++ |. -|+++++++|++. +-+|+....++.+|.+-|+++|+++|+
T Consensus 113 ~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-d~---~d~e~l~~ai~~~------tklV~ie~~sNp~G~v~Dl~~I~~la~ 182 (436)
T PRK07812 113 SSPRLYGGTYNLFHYTLPKLGIEVSFVE-DP---DDLDAWRAAVRPN------TKAFFAETISNPQIDVLDIPGVAEVAH 182 (436)
T ss_pred EeCCcchHHHHHHHHHhhcCeEEEEEEC-CC---CCHHHHHHhCCCC------CeEEEEECCCCCCCeecCHHHHHHHHH
Confidence 777777665433 334677777774 22 2899999888643 348888888999999999999999999
Q ss_pred hcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 712 EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 712 ~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
++|++++||++++.+....+ .-. .||-+..++|||++.+
T Consensus 183 ~~gi~liVD~t~a~~~~~~p----l~~---GaDivv~S~tK~lgg~ 221 (436)
T PRK07812 183 EAGVPLIVDNTIATPYLIRP----LEH---GADIVVHSATKYLGGH 221 (436)
T ss_pred HcCCEEEEECCCcccccCCc----hhc---CCCEEEEecccccCCC
Confidence 99999999999987654332 111 4699999999999855
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.9e-08 Score=107.63 Aligned_cols=225 Identities=10% Similarity=0.002 Sum_probs=143.6
Q ss_pred ccccCCcceeeeeHHHHH---hhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchh
Q psy13453 11 AYPSETLSLLIYESFKAT---HSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNA 87 (764)
Q Consensus 11 ~~~~~~~~~~~YSv~KAa---~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ 87 (764)
+..++. .|.|+..+. +..|+.. +.||+++++.+|+++|+++|++. +-+++.+.++.++|.+.|+++
T Consensus 93 vi~~~~---e~ps~~~~~~~~~~~G~~v---~~v~~~~~g~~d~~~l~~~i~~~-----t~lv~~~~~~n~tG~~~~~~~ 161 (382)
T TIGR03403 93 IITTEV---EHPAVRATCAFLESLGVEV---TYLPINEQGTITAEQVREAITEK-----TALVSVMWANNETGMIFPIKE 161 (382)
T ss_pred EEEcCC---ccHHHHHHHHHHHHCCCEE---EEEecCCCCCCCHHHHHHhcccC-----CeEEEEEcccCCCccccCHHH
Confidence 444444 465555554 4567655 99999999999999999999753 234557788999999999999
Q ss_pred hhc-----CCCceeccccc--------------------ccc-----ceeeeecCCCccccccccccccCCcccC----C
Q psy13453 88 PVS-----NGPLKVGGVLR--------------------RVY-----SSCLVPRGQKSLRTTVLFHFLFQHWQIP----L 133 (764)
Q Consensus 88 ia~-----~~wlHVDa~l~--------------------~~y-----~s~ll~rd~~~l~~~~s~~~d~~d~tle----~ 133 (764)
|++ ++++|||++.. +++ ++++++|+...+...+ .+...+. +
T Consensus 162 I~~la~~~g~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G~g~l~vr~~~~~~p~~-----~g~~~~~~~~~g 236 (382)
T TIGR03403 162 IGEICKERGVLFHTDAVQAIGKIPVDVQKAGVDFLSFSAHKFHGPKGVGGLYIRKGVELTPLF-----HGGEHMGGRRSG 236 (382)
T ss_pred HHHHHHHcCCEEEEechhhcCCCccCccccCCCEEEEcchhhCCCCceEEEEECCCCCCCCcc-----cCCCCCCCcccC
Confidence 886 89999999521 111 1234444432211100 0000011 1
Q ss_pred CCcccHH-HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC---ceeEEEEeeccccccccccccCcc
Q psy13453 134 GRRFRAL-KLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS---MGLVCFRLKVRFWDKLDNLFGTIS 209 (764)
Q Consensus 134 SRr~~AL-klWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~---l~iV~Fry~P~~~~~~~~~~~~~~ 209 (764)
+-..-++ .+-.+++.+ .+++.+..++.-++++++.+.|+++++++++.+++ -++++|...
T Consensus 237 t~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 300 (382)
T TIGR03403 237 TLNVPYIVAMGEAMRLA-NEYLDFEKSHVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISIK--------------- 300 (382)
T ss_pred CcChHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEeC---------------
Confidence 2222223 445555543 45677778889999999999999999999987642 346677542
Q ss_pred CCccHHHHHHHHHHHhcCcEEEEec-----e---------e--C---CeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 210 FGDNDLNKAVYDRIIARKVIYIVKG-----S---------F--Q---DRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 210 ~~~d~~n~~L~~~L~~~G~~~vs~t-----~---------l--~---g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
+.+ ...+.+.|.++|...-+.. . + + ....+|++ .++.+|++||+.+++.|+++.+++
T Consensus 301 -~~~--~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s-~~~~~t~~did~~~~~l~~~~~~~ 376 (382)
T TIGR03403 301 -GVE--GEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLS-LSRFTTEEEIDYTIEVFKKAVQRL 376 (382)
T ss_pred -CCC--HHHHHHhhccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEE-CCCCCCHHHHHHHHHHHHHHHHHH
Confidence 111 2356666777776544321 0 0 0 12579995 566889999999999999987765
Q ss_pred H
Q psy13453 271 L 271 (764)
Q Consensus 271 ~ 271 (764)
.
T Consensus 377 ~ 377 (382)
T TIGR03403 377 R 377 (382)
T ss_pred H
Confidence 3
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.7e-08 Score=106.39 Aligned_cols=228 Identities=10% Similarity=0.005 Sum_probs=154.7
Q ss_pred cccccccCCcceeeeeHHHHHhhc---CCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEE-EeeCCccccccc
Q psy13453 8 PKLAYPSETLSLLIYESFKATHSL---SGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCS-GYCGRTLHQDIQ 83 (764)
Q Consensus 8 ~~~~~~~~~~~~~~YSv~KAa~~L---Gl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~V-atAGTT~~G~iD 83 (764)
++-+++|.. =|=||.-.+++| |++. -.+|||++|++|++.|+++|..+ +++| -.+.+-++|+|-
T Consensus 91 ~~HIIts~i---EH~aVl~~~~~Le~~g~~V---tyl~V~~~G~v~~e~L~~al~~~------T~LVSim~aNnE~G~IQ 158 (386)
T COG1104 91 GKHIITSAI---EHPAVLNTCRYLERQGFEV---TYLPVDSNGLVDLEQLEEALRPD------TILVSIMHANNETGTIQ 158 (386)
T ss_pred CCeEEEccc---ccHHHHHHHHHHHhcCCeE---EEeCCCCCCeEcHHHHHHhcCCC------ceEEEEEecccCeeecc
Confidence 344777777 599999999999 8887 99999999999999999999975 4565 778999999999
Q ss_pred Cchhhhc-----CCCceecccc--------------------cccc----c-eeeeecCCCccccccccccccCCcccCC
Q psy13453 84 SLNAPVS-----NGPLKVGGVL--------------------RRVY----S-SCLVPRGQKSLRTTVLFHFLFQHWQIPL 133 (764)
Q Consensus 84 pi~~ia~-----~~wlHVDa~l--------------------~~~y----~-s~ll~rd~~~l~~~~s~~~d~~d~tle~ 133 (764)
||++|++ +++|||||.- .|++ + +.|+.|..-.+.-. ...=+=|.
T Consensus 159 pI~ei~~i~k~~~i~fHvDAvQa~Gkipi~~~~~~vD~ls~SaHK~~GpkGiGaLyv~~~~~~~p~------i~GGgQE~ 232 (386)
T COG1104 159 PIAEIGEICKERGILFHVDAVQAVGKIPIDLEELGVDLLSFSAHKFGGPKGIGALYVRPGVRLEPL------IHGGGQER 232 (386)
T ss_pred cHHHHHHHHHHcCCeEEEehhhhcCceeccccccCcceEEeehhhccCCCceEEEEECCCCccCce------eccCcCCC
Confidence 9999987 8999999931 2332 1 34444332222211 00011233
Q ss_pred CCcccHH-----HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcC-CCeEEeCCCC---ceeEEEEeecccccccccc
Q psy13453 134 GRRFRAL-----KLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQD-DRFELVCPPS---MGLVCFRLKVRFWDKLDNL 204 (764)
Q Consensus 134 SRr~~AL-----klWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~-p~~ell~~P~---l~iV~Fry~P~~~~~~~~~ 204 (764)
+||..-. .-...-..+..+.+.+...+...+.++|.+.|++. |++.+.+.++ -++++|.+.. .+
T Consensus 233 g~RsGTenv~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~g--v~----- 305 (386)
T COG1104 233 GLRSGTENVPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPG--VE----- 305 (386)
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCC--Cc-----
Confidence 4444433 22334445667888888999999999999999975 9999987742 3455555531 11
Q ss_pred ccCccCCccHHHHHHHHHHHhcCcEEEEec-----ee--------------CCeeEEEEeccCCCCCHHHHHHHHHHHHH
Q psy13453 205 FGTISFGDNDLNKAVYDRIIARKVIYIVKG-----SF--------------QDRLFMRFAICSSQTEESDVQLGWNEIRT 265 (764)
Q Consensus 205 ~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t-----~l--------------~g~~~LRi~v~np~Tt~e~i~~~l~~l~~ 265 (764)
-..+.-.|...|.+..+.. .+ .-...||++ ....|++++++.+++.+++
T Consensus 306 -----------gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S-~g~~tt~eei~~~~~~l~~ 373 (386)
T COG1104 306 -----------GESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFS-LGRFTTEEEIDAAAEALKE 373 (386)
T ss_pred -----------HHHHHHhccccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEE-cCCCCCHHHHHHHHHHHHH
Confidence 1234444444444322111 00 114689996 4567789999999999999
Q ss_pred HHHHHHc
Q psy13453 266 ATEEVLR 272 (764)
Q Consensus 266 ~~~~i~~ 272 (764)
+.+.+.+
T Consensus 374 ~i~~lr~ 380 (386)
T COG1104 374 IIKRLRE 380 (386)
T ss_pred HHHHHhh
Confidence 9988754
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=98.93 E-value=7e-08 Score=106.83 Aligned_cols=228 Identities=11% Similarity=0.061 Sum_probs=140.3
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCC--CcccHHHHHHHHHHHhhC-CCCc-EEEEeeCCcccccccCchhhhc-----
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDS--EWLAYLTLRTIYESFRKS-FLCP-MCSGYCGRTLHQDIQSLNAPVS----- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~--~rmD~~aLe~~I~~~~~~-G~~p-~~VatAGTT~~G~iDpi~~ia~----- 90 (764)
.|||..++++..|+.. +.||++.+ +.+|+++|++++++..+. +..+ +++-+.+++++|.++|+.++++
T Consensus 92 ~~~~~~~~~~~~g~~~---~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~~~~~ 168 (361)
T cd06452 92 AHYTSYVAAERAGLNV---REVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEY 168 (361)
T ss_pred cchHHHHHHHhcCCEE---EEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHHHHHHc
Confidence 7999999999999877 99999865 499999999999764322 1123 4456788999999999999886
Q ss_pred CCCceecccccc---cc-----------------------ceeeeecCCCccccc--cccccccCCcccCC-C-CcccHH
Q psy13453 91 NGPLKVGGVLRR---VY-----------------------SSCLVPRGQKSLRTT--VLFHFLFQHWQIPL-G-RRFRAL 140 (764)
Q Consensus 91 ~~wlHVDa~l~~---~y-----------------------~s~ll~rd~~~l~~~--~s~~~d~~d~tle~-S-Rr~~AL 140 (764)
+++++||++... ++ ++|+..+. +..... ....++....+..+ + +...+.
T Consensus 169 ~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~~~~~G~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (361)
T cd06452 169 GVPLLLNGAYTVGRMPVSGKELGADFIVGSGHKSMAASAPIGVLATTE-EWADIVFRTSQMFKIKEVELLGCTLRGAPLV 247 (361)
T ss_pred CCeEEEECCcccCCcCCCHHHcCCCEEEecCCccccCCCCeEEEEECH-HHHHHHhccccccccceeeeeccccCchHHH
Confidence 789999996421 11 02222221 100000 00000111111111 1 223355
Q ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeC--CCCceeEEEEeeccccccccccccCccCCccHHHHH
Q psy13453 141 KLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVC--PPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKA 218 (764)
Q Consensus 141 klWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~--~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~ 218 (764)
.+++++.++ ..+.+.+++.++.++++++.|+++|+|+++. +...+++.|+.. ...... .....-..+
T Consensus 248 ~~~~al~~~--~~~~~~~~~~~~~~~~l~~~L~~l~g~~v~~~~~~~~n~~~~~~~--~~~~~~-------~~~~~~~~~ 316 (361)
T cd06452 248 TLMASFPHV--KERVKRWDEEVEKARWFVAELEKIEGIKQLGEKPKNHDLMFFETP--SFDEIA-------KKHKRRGYF 316 (361)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCCCCCceEEEEcC--Ccchhh-------hhccccchh
Confidence 666666654 2345667777888999999999999999984 345667777642 110000 000000136
Q ss_pred HHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13453 219 VYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 219 L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~ 267 (764)
+.+.|.++|... ... ....++|+++ +-.++++++.+++.|+++.
T Consensus 317 ~~~~L~~~gI~~-~~~--~~~~~~ri~~--~g~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 317 LYSELKKRGIHG-IKP--GLTRYFKLST--YGLTWEQVEYVVDAFKEIA 360 (361)
T ss_pred HHHHHHHcCceE-EcC--CCceEEEEEe--cCCCHHHHHHHHHHHHHHh
Confidence 889998889752 111 1234788765 3357899999999998653
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.6e-08 Score=113.06 Aligned_cols=150 Identities=14% Similarity=0.107 Sum_probs=108.4
Q ss_pred CchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEe
Q psy13453 557 SPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYT 636 (764)
Q Consensus 557 sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~ 636 (764)
.|...++| +.+++++|.+. .+++++|++++..++.+.. .. ...|++
T Consensus 53 ~p~~~~le----~~la~l~g~~~-----------~~~~~sG~~Ai~~al~al~----~~---------------Gd~Vl~ 98 (380)
T TIGR01325 53 NPTVAAFE----ERIAALEGAER-----------AVATATGMSAIQAALMTLL----QA---------------GDHVVA 98 (380)
T ss_pred CchHHHHH----HHHHHHhCCCc-----------EEEECCHHHHHHHHHHHHh----CC---------------CCEEEE
Confidence 45555555 46677887643 5789999999988875431 10 113555
Q ss_pred cCCcchh----HHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHh
Q psy13453 637 SDQSNSS----VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQE 712 (764)
Q Consensus 637 S~~aH~S----v~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~ 712 (764)
+...|.+ +.+.+...|++++.++.+ |++++++++++. +-+|+....++.+|.+-|+++|+++|++
T Consensus 99 ~~~~~~~t~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~~i~~~------tklV~le~p~np~g~~~dl~~I~~la~~ 167 (380)
T TIGR01325 99 SRSLFGSTVGFISEILPRFGIEVSFVDPT-----DLNAWEAAVKPN------TKLVFVETPSNPLGELVDIAALAELAHA 167 (380)
T ss_pred ecCCcchHHHHHHHHHHHhCCEEEEECCC-----CHHHHHHhcCCC------ceEEEEECCCCCCCeeeCHHHHHHHHHH
Confidence 6666643 344566689998888765 688888887543 4478888888999999999999999999
Q ss_pred cCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCc
Q psy13453 713 YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNF 758 (764)
Q Consensus 713 ~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~ 758 (764)
+|++++||.+|+.+....| .. . .+|.++.++||+++.+-
T Consensus 168 ~gi~livD~a~~~~~~~~p-l~---~---g~Divv~S~sK~l~g~g 206 (380)
T TIGR01325 168 IGALLVVDNVFATPVLQQP-LK---L---GADVVVYSATKHIDGQG 206 (380)
T ss_pred cCCEEEEECCCcccccCCc-hh---h---CCCEEEeeccceecCCC
Confidence 9999999999986543222 11 1 36999999999998763
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.4e-08 Score=110.43 Aligned_cols=191 Identities=15% Similarity=0.067 Sum_probs=130.1
Q ss_pred HHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhc
Q psy13453 538 IVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQ 617 (764)
Q Consensus 538 ~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~ 617 (764)
.+.+.+...+......|........+.+.+.+|+.+..|.+-+ ....++|+|++++...++.+. ..
T Consensus 47 ~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~-------~~~i~~t~G~~~al~~~~~~l----~~--- 112 (388)
T PRK07337 47 PVVEAAARALRRGVTQYTSALGLAPLREAIAAWYARRFGLDVA-------PERIVVTAGASAALLLACLAL----VE--- 112 (388)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCC-------hHhEEEecCcHHHHHHHHHHh----cC---
Confidence 3445555555433444555556778888899999888876421 135789999999876655432 11
Q ss_pred cCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCC--CCcccHHHHHHHHHHhhhcCCCceEEEEeeccC
Q psy13453 618 SKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTT 695 (764)
Q Consensus 618 ~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~--~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT 695 (764)
+...|++++-+|.+...++...|.+++.+|.+. ++.+|+++|++.+.+. +.+|+.+..++
T Consensus 113 ------------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~v~l~~p~N 174 (388)
T PRK07337 113 ------------RGDEVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWGER------TRGVLLASPSN 174 (388)
T ss_pred ------------CCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHHhhcCcc------ceEEEEECCCC
Confidence 122577888889888888888999999999974 4689999999988643 23666678899
Q ss_pred Cccccc---cHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEE-EcCCccCCCCc-Cceee
Q psy13453 696 GTCAFD---NLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFD-FNTHKWLLVNF-DCSAM 763 (764)
Q Consensus 696 ~~GaiD---pl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit-~d~HK~l~~P~-~~g~l 763 (764)
.+|.+- ++++|+++|+++++|+++|.+|..... -+...... .+ ..+.|+ .+++|.++.|- -+|.+
T Consensus 175 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~-~~~~~~~~-~~-~~~vi~~~S~SK~~~~~G~RiG~~ 244 (388)
T PRK07337 175 PTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSY-DAAPVSAL-SL-GDDVITINSFSKYFNMTGWRLGWL 244 (388)
T ss_pred CCCcCcCHHHHHHHHHHHHHCCCEEEEecccccccc-CCCCcChh-hc-cCCEEEEEechhhcCCchhheeee
Confidence 999975 578888999999999999999986432 11111111 11 124554 48999886542 24543
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.9e-08 Score=111.05 Aligned_cols=190 Identities=11% Similarity=0.055 Sum_probs=127.6
Q ss_pred HHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhcc
Q psy13453 539 VGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQS 618 (764)
Q Consensus 539 lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~ 618 (764)
+.+.+...+......|...+....+.+.+.+|+.+..|++-+ ....++|+|+++++..++.+. ..
T Consensus 50 v~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~-------~~~i~it~G~~~al~~~~~~~----~~---- 114 (387)
T PRK08960 50 IVAAGQAALAAGHTRYTAARGLPALREAIAGFYAQRYGVDVD-------PERILVTPGGSGALLLASSLL----VD---- 114 (387)
T ss_pred HHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHHhCCCCC-------hhhEEEccCcHHHHHHHHHHh----cC----
Confidence 334444444333334555556677888888888887776432 246789999999976665432 11
Q ss_pred CCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCCC--CcccHHHHHHHHHHhhhcCCCceEEEEeeccCC
Q psy13453 619 KNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDN--GVLRGDALLTAVKEDLAKGLIPCCLIATLGTTG 696 (764)
Q Consensus 619 ~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~--g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~ 696 (764)
++..|++++-+|.+....+...|.+++.||++++ +.+|+++|++.+++. +.+|+.+..++.
T Consensus 115 -----------~gd~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~------~~~i~i~~p~NP 177 (387)
T PRK08960 115 -----------PGKHWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWNAD------TVGALVASPANP 177 (387)
T ss_pred -----------CCCEEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHHHHHhCcc------ceEEEEECCCCC
Confidence 1235778899999999999999999999999754 579999999987653 236667778999
Q ss_pred cccccc---HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCccc-EEEEcCCccCCCC-cCceee
Q psy13453 697 TCAFDN---LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVD-SFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 697 ~GaiDp---l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aD-Sit~d~HK~l~~P-~~~g~l 763 (764)
+|.+-+ +.+|+++|++||+|+.+|.+|..... .+.....+ .+. .+ -+.-+++|.++.| .-+|.+
T Consensus 178 tG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~-~~~~~~~~-~~~-~~vi~~~S~SK~~g~~GlRiG~~ 246 (387)
T PRK08960 178 TGTLLSRDELAALSQALRARGGHLVVDEIYHGLTY-GVDAASVL-EVD-DDAFVLNSFSKYFGMTGWRLGWL 246 (387)
T ss_pred CCcCcCHHHHHHHHHHHHHcCCEEEEEcccccccc-CCCCCChh-hcc-CCEEEEeecccccCCcccEEEEE
Confidence 999865 56677789999999999999976432 11111111 221 13 3456899988643 225543
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.1e-08 Score=110.91 Aligned_cols=210 Identities=15% Similarity=0.092 Sum_probs=133.7
Q ss_pred CCCccccccCCCCC------hHHHHHHHHHHhhccc-CccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEE
Q psy13453 521 QSPQFNAYFPTGSS------YPSIVGDMLSGAFGLI-GFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGII 593 (764)
Q Consensus 521 ~~P~~~~~~~~~~~------~~~~lad~l~~~lN~n-~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~Gvf 593 (764)
.++..+.+..+.++ ++..+.+.+...++.. ...|........+-+.+.+|+.+.++.+++.. ..-.....++
T Consensus 31 ~~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~-~~~~~~~i~i 109 (412)
T PTZ00433 31 SPKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLK-STIKKDNVVL 109 (412)
T ss_pred CCCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHhhcccccccc-CCCChhhEEE
Confidence 34455555544432 3455566666655542 23444444567788888888887654211000 0001246789
Q ss_pred eCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCC--CCcccHHHH
Q psy13453 594 QSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDAL 671 (764)
Q Consensus 594 TsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~--~g~md~~~L 671 (764)
|+|+++++..++.+... +...|+++.-++......+...|++++.+|+++ ++.+|+++|
T Consensus 110 t~G~~~al~~~~~~~~~-------------------~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l 170 (412)
T PTZ00433 110 CSGVSHAILMALTALCD-------------------EGDNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEI 170 (412)
T ss_pred eCChHHHHHHHHHHhcC-------------------CCCEEEEccCCcccHHHHHHHcCCEEEEEecCccccCcCCHHHH
Confidence 99999998777664311 122467777788888899999999999999863 578999999
Q ss_pred HHHHHHhhhcCCCceEEEEeeccCCcccc---ccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCC-cccE-E
Q psy13453 672 LTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLE-YVDS-F 746 (764)
Q Consensus 672 e~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie-~aDS-i 746 (764)
++.+++. +-+|+.+..++.+|.+ +++++|+++|++||+|+++|.+|.....-...+.. +..+. ..+. +
T Consensus 171 ~~~~~~~------~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~~i~ 243 (412)
T PTZ00433 171 RRLVDDR------TKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTS-VADFDTTVPRVI 243 (412)
T ss_pred HHHhccC------ceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccc-hhhccCCCceEE
Confidence 9887653 3366777888999975 56888899999999999999999854321111111 11111 1123 3
Q ss_pred EEcCCccCCCC
Q psy13453 747 DFNTHKWLLVN 757 (764)
Q Consensus 747 t~d~HK~l~~P 757 (764)
.-++-|.++.|
T Consensus 244 ~~SfSK~~~~p 254 (412)
T PTZ00433 244 LGGTAKNLVVP 254 (412)
T ss_pred EccchhhcCCC
Confidence 45889987544
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.6e-08 Score=110.41 Aligned_cols=143 Identities=13% Similarity=0.105 Sum_probs=108.6
Q ss_pred cccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCce
Q psy13453 553 SWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKL 632 (764)
Q Consensus 553 ~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~ 632 (764)
.|........+.+.+.+++.+..|++-+ ....++|+|+++++..++.+.. . +..
T Consensus 68 ~Y~~~~G~~~lr~~ia~~~~~~~g~~~~-------~~~i~~t~G~~~al~~~~~~l~----~---------------~gd 121 (409)
T PLN02656 68 GYAPTVGLPQARRAIAEYLSRDLPYKLS-------LDDVFITSGCTQAIDVALSMLA----R---------------PGA 121 (409)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCC-------cccEEEeCChHHHHHHHHHHHh----C---------------CCC
Confidence 3444455667888888888877665422 2467899999999777665431 1 112
Q ss_pred EEEecCCcchhHHHHHHhCCCceEEEecC--CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccHHHHH
Q psy13453 633 VAYTSDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLEELG 707 (764)
Q Consensus 633 vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d--~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~eIa 707 (764)
.|++++-+|.....++...|++++.+|++ +.+.+|+++|++++++. +.+|+.+..++.+|.+ +++++|+
T Consensus 122 ~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~P~NPtG~~~s~~~~~~i~ 195 (409)
T PLN02656 122 NILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQN------TVALVIINPGNPCGNVYSYQHLKKIA 195 (409)
T ss_pred eEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhccC------ceEEEEECCCCCCCCCCCHHHHHHHH
Confidence 47777888888888888899999999985 34689999999887543 3467777789999999 7899999
Q ss_pred HHHHhcCCEEEEeccccccc
Q psy13453 708 PICQEYNIWLHVDAAYAGSA 727 (764)
Q Consensus 708 ~i~~~~glwLHVDaA~Gg~~ 727 (764)
++|++||+|+++|.+|+...
T Consensus 196 ~~a~~~~~~ii~De~y~~~~ 215 (409)
T PLN02656 196 ETAEKLKILVIADEVYGHLA 215 (409)
T ss_pred HHHHHcCCEEEEehhhhhcc
Confidence 99999999999999998643
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.7e-08 Score=109.17 Aligned_cols=160 Identities=13% Similarity=0.030 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcch
Q psy13453 563 LEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNS 642 (764)
Q Consensus 563 lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~ 642 (764)
...++.+.+++++|.+. .+++++|++||..++.+++... ++.+|+++...|.
T Consensus 91 ~~~~Le~~la~~~g~~~-----------~l~~~sG~~an~~ai~~l~~~~-----------------~~~~v~~~~~~h~ 142 (402)
T TIGR01821 91 PHVELEAELADLHGKES-----------ALVFTSGYVANDATLATLAKII-----------------PGCVIFSDELNHA 142 (402)
T ss_pred HHHHHHHHHHHHhCCCe-----------EEEECchHHHHHHHHHHhhCCC-----------------CCCEEEEcchHhH
Confidence 33455567788887532 5777888999999887664320 1235777777899
Q ss_pred hHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEecc
Q psy13453 643 SVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAA 722 (764)
Q Consensus 643 Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA 722 (764)
++..++...|..+..++. .|+++|++.++... ...+.+|+....++.+|.+-|+++|+++|++||+||+||.|
T Consensus 143 s~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~--~~~~~~v~~e~~~~~~G~~~~l~~i~~l~~~~~~~livDea 215 (402)
T TIGR01821 143 SMIEGIRHSGAEKFIFRH-----NDVAHLEKLLQSVD--PNRPKIIAFESVYSMDGDIAPIEEICDLADKYGALTYLDEV 215 (402)
T ss_pred HHHHHHHHcCCeEEEECC-----CCHHHHHHHHHhcc--CCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEeCc
Confidence 999998888887665543 37888998886431 12356777888888999999999999999999999999999
Q ss_pred ccccccccchhhh--hhcCC-CcccEEEEcCCccCCCCc
Q psy13453 723 YAGSALLLPEYAH--LKRGL-EYVDSFDFNTHKWLLVNF 758 (764)
Q Consensus 723 ~Gg~~l~~~~~r~--~l~gi-e~aDSit~d~HK~l~~P~ 758 (764)
|+.+.+ .+.... ...++ +..|-+..++.|.++.+-
T Consensus 216 ~~~G~~-g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G 253 (402)
T TIGR01821 216 HAVGLY-GPRGGGIAERDGLMHRIDIIEGTLAKAFGVVG 253 (402)
T ss_pred cccccc-CCCCCccchhccCCCCCeEEEEechhhhccCC
Confidence 984432 121111 11222 345877779999988644
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.2e-08 Score=112.24 Aligned_cols=156 Identities=10% Similarity=0.024 Sum_probs=107.9
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
..|...++|+ .+++++|.+ ..+++++|+.++..++.+.. . +.-.|+
T Consensus 59 ~~pt~~~Le~----~lA~l~G~~-----------~al~~~sG~~Ai~~~l~al~----~---------------~Gd~Vv 104 (386)
T PRK06767 59 GNPTVKLFEE----RMAVLEGGE-----------EALAFGSGMAAISATLIGFL----K---------------AGDHII 104 (386)
T ss_pred CCcchHHHHH----HHHHHhCCC-----------cEEEECCHHHHHHHHHHHHh----C---------------CCCEEE
Confidence 4566666665 667777753 35788888887666554321 1 112467
Q ss_pred ecCCcchhHHHHH----HhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHH
Q psy13453 636 TSDQSNSSVEKSA----IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQ 711 (764)
Q Consensus 636 ~S~~aH~Sv~kAa----~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~ 711 (764)
++...|.+..... ...|+.+..++. .|+++++++|++. +-+|+....++.+|.+-|+++|+++|+
T Consensus 105 ~~~~~y~~~~~~~~~~~~~~gi~~~~~~~-----~d~~~l~~~i~~~------tklV~lesp~NptG~v~dl~~I~~la~ 173 (386)
T PRK06767 105 CSNGLYGCTYGFLEVLEEKFMITHSFCDM-----ETEADIENKIRPN------TKLIFVETPINPTMKLIDLKQVIRVAK 173 (386)
T ss_pred EcCCcHHHHHHHHHHHHhhcCeEEEEeCC-----CCHHHHHHhhCcC------ceEEEEeCCCCCCceecCHHHHHHHHH
Confidence 7777776554443 334555555543 3788999888653 347888888999999999999999999
Q ss_pred hcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcC--ceee
Q psy13453 712 EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD--CSAM 763 (764)
Q Consensus 712 ~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~--~g~l 763 (764)
++|++++||+||+......| ... .+|.++.+++|+++.+-+ .|++
T Consensus 174 ~~g~~vivD~a~a~~~~~~p----l~~---g~Div~~S~sK~l~g~g~~~gG~v 220 (386)
T PRK06767 174 RNGLLVIVDNTFCSPYLQRP----LEL---GCDAVVHSATKYIGGHGDVVAGVT 220 (386)
T ss_pred HcCCEEEEECCCcccccCCc----hhc---CCcEEEecCcceecCCCCceeEEE
Confidence 99999999999975433222 112 469999999999987754 3543
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.9e-08 Score=106.94 Aligned_cols=230 Identities=11% Similarity=0.018 Sum_probs=141.6
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecC--CCCCcccHHHHHHHHHHHhh-CCCCcEE-EEeeCCcccccccCchhhhc-----
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGL--PDSEWLAYLTLRTIYESFRK-SFLCPMC-SGYCGRTLHQDIQSLNAPVS----- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpv--d~~~rmD~~aLe~~I~~~~~-~G~~p~~-VatAGTT~~G~iDpi~~ia~----- 90 (764)
.|||+..++...|+.. +.||+ ++++.+|+++|+++|++... .+..+-+ +-+.+++++|.+.|++++++
T Consensus 111 ~h~s~~~~~~~~G~~~---~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~~la~~~ 187 (387)
T PRK09331 111 AHYTSYVAAERAGLNV---REVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKVAKVAHEY 187 (387)
T ss_pred chHHHHHHHHHcCCEE---EEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHHHHHHHHHc
Confidence 8999999999999877 99999 77899999999999986422 1122334 56778889999999999886
Q ss_pred CCCceeccccccc---c------c-----------------eeeeecCCCccccccccc--cccCCcc-cCC-CCcccHH
Q psy13453 91 NGPLKVGGVLRRV---Y------S-----------------SCLVPRGQKSLRTTVLFH--FLFQHWQ-IPL-GRRFRAL 140 (764)
Q Consensus 91 ~~wlHVDa~l~~~---y------~-----------------s~ll~rd~~~l~~~~s~~--~d~~d~t-le~-SRr~~AL 140 (764)
++++|||++.... + . +++..++ +......... ++..... +.+ ++...+.
T Consensus 188 g~~livD~a~~~g~~~~~~~~~g~D~~~~s~~K~l~~~~~~G~l~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (387)
T PRK09331 188 GIPFLLNGAYTVGRMPVDGKKLGADFIVGSGHKSMAASAPSGVLATTE-EYADKVFRTSRKFGVKEVELLGCTLRGAPLV 266 (387)
T ss_pred CCEEEEECCcccCCcCCCHHHcCCCEEEeeCcccccCCCCEEEEEECH-HHHhhcccccCCCcccceeeeceecCchHHH
Confidence 8899999964211 0 0 2222221 1111100000 0000001 111 2233455
Q ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCC--CCceeEEEEeeccccccccccccCccCCccHHHHH
Q psy13453 141 KLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCP--PSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKA 218 (764)
Q Consensus 141 klWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~--P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~ 218 (764)
.+++++..+=. ..++.++..+.++++++.|+++++|+++.+ ...++++|.. | ...... .....-..+
T Consensus 267 ~~~aal~~~~~--~~~~~~~~~~~~~~l~~~L~~l~g~~~~~~~~~~~~i~~~~~-~-~~~~~~-------~~~~~~~~~ 335 (387)
T PRK09331 267 TLMASFPHVVE--RVKRWDEEVKKARWFVDELEKIEGFKQLGEKPRNHDLMKFET-P-SFDEIA-------KKHKRRGFF 335 (387)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCCEEEeccCcCcCCeEEEeC-C-chhHHh-------hhccccchh
Confidence 66666655422 234567778999999999999999999863 2455666653 2 110000 000001256
Q ss_pred HHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 219 VYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 219 L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
+.++|.+.|...+. .....++|+.. ...++++++.+++.++++.++
T Consensus 336 ~~~~L~~~gI~~~~---~~~~~i~ri~~--~g~t~~di~~l~~aL~~i~~~ 381 (387)
T PRK09331 336 LYEELKKRGIHGIK---PGATKEFKLST--YGLTWEQVEYVADAFKEIAEK 381 (387)
T ss_pred HHHHHHHcCceEEc---cCCceEEEEEe--ccCCHHHHHHHHHHHHHHHHh
Confidence 88999888874221 12235667644 335789999999999987654
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.1e-08 Score=113.93 Aligned_cols=151 Identities=18% Similarity=0.140 Sum_probs=111.0
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
..|....+|+ .++++.|.+ ..++|++|+.|+..++.... . ++..|+
T Consensus 62 ~~p~~~~Le~----~lA~leg~~-----------~al~~~sG~~Ai~~al~~ll----~---------------~GD~Vl 107 (431)
T PRK08248 62 MNPTTDVFEK----RIAALEGGI-----------GALAVSSGQAAITYSILNIA----S---------------AGDEIV 107 (431)
T ss_pred CCchHHHHHH----HHHHHhCCC-----------cEEEECCHHHHHHHHHHHHh----C---------------CCCEEE
Confidence 4566666665 577777743 46899999999887775431 1 112466
Q ss_pred ecCCcchh----HHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHH
Q psy13453 636 TSDQSNSS----VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQ 711 (764)
Q Consensus 636 ~S~~aH~S----v~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~ 711 (764)
++...|.. +...+...|++++.|+++ |+++|+++|++. +-+|++...++.+|.+-|+++|+++|+
T Consensus 108 v~~~~y~~t~~~~~~~~~~~Gv~v~~vd~~-----d~e~l~~ai~~~------tklV~l~sp~NPtG~v~di~~I~~la~ 176 (431)
T PRK08248 108 SSSSLYGGTYNLFAHTLPKLGITVKFVDPS-----DPENFEAAITDK------TKALFAETIGNPKGDVLDIEAVAAIAH 176 (431)
T ss_pred EccCchhhHHHHHHHHHHhCCEEEEEECCC-----CHHHHHHhcCCC------CeEEEEECCCCCCCcccCHHHHHHHHH
Confidence 77766643 334466689998888763 789999888653 337777788889999999999999999
Q ss_pred hcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCc
Q psy13453 712 EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNF 758 (764)
Q Consensus 712 ~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~ 758 (764)
++|++++||++|+......| . -. .+|-++.++|||++.|-
T Consensus 177 ~~gi~vIvD~t~a~~~~~~p-l---~~---gaDivv~S~tK~lgg~g 216 (431)
T PRK08248 177 EHGIPLIVDNTFASPYLLRP-I---EH---GADIVVHSATKFIGGHG 216 (431)
T ss_pred HcCCEEEEeCCCCccccCCh-h---Hc---CCCEEEEcCccccCCCC
Confidence 99999999999986443332 1 12 46999999999999774
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.2e-08 Score=109.93 Aligned_cols=153 Identities=15% Similarity=0.099 Sum_probs=108.6
Q ss_pred CchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEe
Q psy13453 557 SPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYT 636 (764)
Q Consensus 557 sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~ 636 (764)
++...++|++. ++.+|.+ .++.+++||.|+++|+.+.. ..++-.|++
T Consensus 24 g~~~~~fE~~~----a~~~g~~-----------~~~~~~sgt~Al~~al~~l~------------------~~~gdeVi~ 70 (363)
T PF01041_consen 24 GPYVEEFEKEF----AEYFGVK-----------YAVAVSSGTSALHLALRALG------------------LGPGDEVIV 70 (363)
T ss_dssp SHHHHHHHHHH----HHHHTSS-----------EEEEESSHHHHHHHHHHHTT------------------GGTTSEEEE
T ss_pred CHHHHHHHHHH----HHHhCCC-----------eEEEeCChhHHHHHHHHhcC------------------CCcCceEec
Confidence 78888888854 5555643 47899999999998887521 112346889
Q ss_pred cCCcchhHHHHHHhCCCceEEEecC-CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCC
Q psy13453 637 SDQSNSSVEKSAIIGDVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNI 715 (764)
Q Consensus 637 S~~aH~Sv~kAa~~lGl~v~~Vp~d-~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~gl 715 (764)
+..+..+...|...+|..++.+++| +++.||+++|+++|.+.++ +|+. +...|...|+++|.++|+++|+
T Consensus 71 p~~t~~~~~~ai~~~G~~pv~~Di~~~~~~id~~~~~~~i~~~t~------ai~~---~h~~G~~~d~~~i~~~~~~~~i 141 (363)
T PF01041_consen 71 PAYTFPATASAILWAGAEPVFVDIDPETLNIDPEALEKAITPKTK------AILV---VHLFGNPADMDAIRAIARKHGI 141 (363)
T ss_dssp ESSS-THHHHHHHHTT-EEEEE-BETTTSSB-HHHHHHHHHTTEE------EEEE---E-GGGB---HHHHHHHHHHTT-
T ss_pred CCCcchHHHHHHHHhccEEEEEeccCCcCCcCHHHHHHHhccCcc------EEEE---ecCCCCcccHHHHHHHHHHcCC
Confidence 9999999999999999999999999 7899999999999988754 4433 3456777899999999999999
Q ss_pred EEEEeccccccccccchhhhhhcCCCcccEEEEcCC--ccCCC
Q psy13453 716 WLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTH--KWLLV 756 (764)
Q Consensus 716 wLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~H--K~l~~ 756 (764)
+++-|+|++.+...- .+.-|- ..|.-++|+| |.+.+
T Consensus 142 ~lIeD~a~a~g~~~~----g~~~G~-~gd~~~fSf~~~K~i~~ 179 (363)
T PF01041_consen 142 PLIEDAAQAFGARYK----GRPVGS-FGDIAIFSFHPTKIITT 179 (363)
T ss_dssp EEEEE-TTTTT-EET----TEETTS-SSSEEEEESSTTSSS-S
T ss_pred cEEEccccccCceeC----CEeccC-CCCceEecCCCCCCCcC
Confidence 999999998875432 222232 4577777776 77743
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.7e-08 Score=112.04 Aligned_cols=150 Identities=15% Similarity=0.107 Sum_probs=108.5
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
..|....+|+ .++++.|... .+.+++|+.|+..++.+. .. +...|+
T Consensus 45 g~p~~~~lE~----~la~leg~~~-----------~v~~ssG~~Ai~~~l~al----l~---------------~Gd~Vv 90 (397)
T PRK05939 45 GTPTTAALEA----KITKMEGGVG-----------TVCFATGMAAIAAVFLTL----LR---------------AGDHLV 90 (397)
T ss_pred CCHHHHHHHH----HHHHHhCCCe-----------EEEeCCHHHHHHHHHHHH----cC---------------CCCEEE
Confidence 5677778887 4556666543 466777787776665432 11 112456
Q ss_pred ecCCcc---hhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHh
Q psy13453 636 TSDQSN---SSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQE 712 (764)
Q Consensus 636 ~S~~aH---~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~ 712 (764)
+++..| .++.+.+...|+.++.++++ |+++|+++|.+. +-+|+....++.+|.+.||++|+++|++
T Consensus 91 ~~~~~y~~t~~~~~~l~~~G~~v~~v~~~-----d~e~l~~~l~~~------tklV~vesp~NptG~v~dl~~I~~la~~ 159 (397)
T PRK05939 91 SSQFLFGNTNSLFGTLRGLGVEVTMVDAT-----DVQNVAAAIRPN------TRMVFVETIANPGTQVADLAGIGALCRE 159 (397)
T ss_pred ECCCccccHHHHHHHHHhcCCEEEEECCC-----CHHHHHHhCCCC------CeEEEEECCCCCCCCHHhHHHHHHHHHH
Confidence 666654 45556667789999888763 789999988643 4478888889999999999999999999
Q ss_pred cCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 713 YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 713 ~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
+|++++||++|+.+..+-+ .-. .+|-+..++|||++.+
T Consensus 160 ~gi~livD~t~a~~~~~~~----~~~---gaDivv~S~sK~~~g~ 197 (397)
T PRK05939 160 RGLLYVVDNTMTSPWLFRP----KDV---GASLVINSLSKYIAGH 197 (397)
T ss_pred cCCEEEEECCcccccccCc----ccc---CCEEEEecCeecccCC
Confidence 9999999999986543222 111 4699999999999865
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.3e-08 Score=112.20 Aligned_cols=153 Identities=17% Similarity=0.099 Sum_probs=110.5
Q ss_pred cCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEE
Q psy13453 555 LSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVA 634 (764)
Q Consensus 555 ~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi 634 (764)
...|...++|+ .+++++|.+ ..++++||+.|+..++.+. .. +...|
T Consensus 50 ~~np~~~~lE~----~lA~l~g~~-----------~~l~~~sG~~Ai~~~l~~l----l~---------------~GD~V 95 (385)
T PRK08574 50 EENPTLRPLEE----ALAKLEGGV-----------DALAFNSGMAAISTLFFSL----LK---------------AGDRV 95 (385)
T ss_pred CCCccHHHHHH----HHHHHhCCC-----------cEEEeCCHHHHHHHHHHHH----hC---------------CCCEE
Confidence 34566667666 567777753 3578899999988777643 11 12257
Q ss_pred EecCCcchhHHHHHH---hCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHH
Q psy13453 635 YTSDQSNSSVEKSAI---IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQ 711 (764)
Q Consensus 635 ~~S~~aH~Sv~kAa~---~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~ 711 (764)
+++...|.+....++ ..|+.++.+. +|+++|+++|++. .+-+|+....++.+|.+-|+++|+++|+
T Consensus 96 lv~~~~y~~~~~~~~~~~~~g~~v~~~~------~d~~~l~~~i~~~-----~tklV~ie~p~NPtG~v~dl~~I~~la~ 164 (385)
T PRK08574 96 VLPMEAYGTTLRLLKSLEKFGVKVVLAY------PSTEDIIEAIKEG-----RTKLVFIETMTNPTLKVIDVPEVAKAAK 164 (385)
T ss_pred EEcCCCchhHHHHHHHhhccCcEEEEEC------CCHHHHHHhcCcc-----CceEEEEECCCCCCCEecCHHHHHHHHH
Confidence 788889988776654 3466666553 3578888888651 1336677888888999999999999999
Q ss_pred hcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcC
Q psy13453 712 EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD 759 (764)
Q Consensus 712 ~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~ 759 (764)
++|+|++||.+|+.+....+ .-. .+|.++.++|||++.|-+
T Consensus 165 ~~gi~livD~t~a~~~~~~~----l~~---GaDivv~S~sK~l~g~~d 205 (385)
T PRK08574 165 ELGAILVVDNTFATPLLYRP----LRH---GADFVVHSLTKYIAGHND 205 (385)
T ss_pred HcCCEEEEECCCCccccCCh----hhh---CCcEEEeeCceeecCCCC
Confidence 99999999999987644322 112 369999999999998754
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2e-08 Score=113.30 Aligned_cols=156 Identities=15% Similarity=0.105 Sum_probs=110.8
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
..|....+|+ .+++++|.+. .+++++|+.++.+++.+. .. ++-.|+
T Consensus 63 ~~p~~~~le~----~lA~l~g~~~-----------~i~~~sG~~Al~~~l~~l----l~---------------~Gd~Vi 108 (403)
T PRK07503 63 SNPTLALLEQ----RMASLEGGEA-----------AVALASGMGAITATLWTL----LR---------------PGDEVI 108 (403)
T ss_pred CCchHHHHHH----HHHHHhCCCc-----------EEEEcCHHHHHHHHHHHH----cC---------------CCCEEE
Confidence 4566666664 6788888743 478888998876666432 11 112456
Q ss_pred ecCCcchh----HHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHH
Q psy13453 636 TSDQSNSS----VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQ 711 (764)
Q Consensus 636 ~S~~aH~S----v~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~ 711 (764)
++...|.. ....+...|+.++.|+.+ |+++|+++|++. +-+|+....++.+|.+-|+++|+++|+
T Consensus 109 v~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~~i~~~------tklV~le~p~NPtG~~~di~~I~~la~ 177 (403)
T PRK07503 109 VDQTLYGCTFAFLHHGLGEFGVTVRHVDLT-----DPAALKAAISDK------TRMVYFETPANPNMRLVDIAAVAEIAH 177 (403)
T ss_pred EccCccchHHHHHHHHHhhCCEEEEEeCCC-----CHHHHHHhcCcc------CcEEEEeCCCCCCCeeeCHHHHHHHHH
Confidence 66665543 334456688888888764 689999988653 336777788899999999999999999
Q ss_pred hcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcC--ceee
Q psy13453 712 EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD--CSAM 763 (764)
Q Consensus 712 ~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~--~g~l 763 (764)
++|++++||.+|+......+ . +. .+|-++.+++|+++.+-+ .|++
T Consensus 178 ~~gi~lIvD~a~a~~~~~~~-l-----~~-g~Di~v~S~tK~l~g~gd~~gG~v 224 (403)
T PRK07503 178 GAGAKVVVDNTYCTPYLQRP-L-----EL-GADLVVHSATKYLGGHGDITAGLV 224 (403)
T ss_pred HcCCEEEEECCCcccccCCc-h-----hh-CCCEEEccccccccCCCceeEEEE
Confidence 99999999999986533211 1 11 469999999999997654 5654
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.1e-08 Score=112.58 Aligned_cols=155 Identities=11% Similarity=0.083 Sum_probs=110.4
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
..|....+|+ .++++.|.+. .+++++|+.++..++. .+.. +-.|+
T Consensus 52 ~~p~~~~le~----~lA~l~g~~~-----------~v~~~sG~~ai~~~l~-----~l~~---------------Gd~Vl 96 (390)
T PRK08064 52 GNPTREALED----IIAELEGGTK-----------GFAFASGMAAISTAFL-----LLSK---------------GDHVL 96 (390)
T ss_pred CChhHHHHHH----HHHHHhCCCC-----------eEEECCHHHHHHHHHH-----HhCC---------------CCEEE
Confidence 3455555554 6777777643 3666777776544442 1111 12366
Q ss_pred ecCCcchhH----HHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHH
Q psy13453 636 TSDQSNSSV----EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQ 711 (764)
Q Consensus 636 ~S~~aH~Sv----~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~ 711 (764)
++...|.+. .+.+...|+.++.|+.+ |++++++++++. +-+|+.+..++.+|.+-|+++|.++|+
T Consensus 97 v~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~~l~~~------tklV~l~~p~NptG~~~dl~~I~~la~ 165 (390)
T PRK08064 97 ISEDVYGGTYRMITEVLSRFGIEHTFVDMT-----NLEEVAQNIKPN------TKLFYVETPSNPLLKVTDIRGVVKLAK 165 (390)
T ss_pred EccCccchHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcCCC------ceEEEEECCCCCCcEeccHHHHHHHHH
Confidence 777777543 34556689999998874 688888888654 348888999999999999999999999
Q ss_pred hcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcC--ceee
Q psy13453 712 EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD--CSAM 763 (764)
Q Consensus 712 ~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~--~g~l 763 (764)
++|+++.||+||+.+....+. . . .+|-+..++|||++.|.+ .|++
T Consensus 166 ~~g~~vvvD~a~~~~~~~~~~-~---~---g~Divv~S~tK~~~G~~~~laG~~ 212 (390)
T PRK08064 166 AIGCLTFVDNTFLTPLLQKPL-D---L---GADVVLHSATKFLAGHSDVLAGLA 212 (390)
T ss_pred HcCCEEEEECCCCcccccCch-h---h---CCcEEEeecceeccCCccceeEEE
Confidence 999999999999876543321 1 1 369999999999988876 3654
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.7e-08 Score=112.00 Aligned_cols=149 Identities=14% Similarity=0.083 Sum_probs=107.4
Q ss_pred CchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEe
Q psy13453 557 SPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYT 636 (764)
Q Consensus 557 sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~ 636 (764)
.|....+| +.+++++|.+. .+++++|+.++..++.+. .. ++..|++
T Consensus 64 ~p~~~~Le----~~lA~l~G~~~-----------~~~~~sG~~Ai~~~l~~~----l~---------------~Gd~Vl~ 109 (398)
T PRK07504 64 NPTVDMFE----KRMCALEGAED-----------ARATASGMAAVTAAILCQ----VK---------------AGDHVVA 109 (398)
T ss_pred CchHHHHH----HHHHHHhCCCe-----------eeEecCHHHHHHHHHHHH----hC---------------CCCEEEE
Confidence 55666666 46777888765 356788898887665431 11 1124666
Q ss_pred cCCcchhHH----HHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHh
Q psy13453 637 SDQSNSSVE----KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQE 712 (764)
Q Consensus 637 S~~aH~Sv~----kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~ 712 (764)
+...+.+.. ..+...|+.++.++ .+|+++++++|++. +-+|+.+..++.+|.+-|+++|+++|++
T Consensus 110 ~~~~y~~~~~~~~~~~~~~G~~v~~vd-----~~d~e~l~~ai~~~------tklV~lesp~NptG~v~dl~~I~~la~~ 178 (398)
T PRK07504 110 ARALFGSCRYVVETLLPRYGIESTLVD-----GLDLDNWEKAVRPN------TKVFFLESPTNPTLEVIDIAAVAKIANQ 178 (398)
T ss_pred cCCchhHHHHHHHHHHhhcCeEEEEEC-----CCCHHHHHHhcCcC------ceEEEEECCCCCCcEecCHHHHHHHHHH
Confidence 766665433 33455788877774 27899999988654 3488889999999999999999999999
Q ss_pred cCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 713 YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 713 ~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
+|++++||+||+.+....+. .+ .+|.++.++|||++.+
T Consensus 179 ~gi~lvvD~a~a~~~~~~~~------~~-gaDivv~S~sK~l~g~ 216 (398)
T PRK07504 179 AGAKLVVDNVFATPLFQKPL------EL-GAHIVVYSATKHIDGQ 216 (398)
T ss_pred cCCEEEEECCccccccCCch------hh-CCCEEEeeccccccCC
Confidence 99999999999865443221 11 3699999999999875
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.5e-08 Score=110.18 Aligned_cols=219 Identities=10% Similarity=0.035 Sum_probs=148.9
Q ss_pred eHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCceec
Q psy13453 23 ESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKVG 97 (764)
Q Consensus 23 Sv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHVD 97 (764)
.+...++..|+.. +.||++.++.+|+++|+++|.+. +-+++-+..+.++|.+-|+++|++ +++++||
T Consensus 138 ~~~~~a~~~g~~v---~~v~~~~~~~~~~~~l~~~i~~~-----t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD 209 (424)
T PLN02855 138 PWQLVAQKTGAVL---KFVGLTPDEVLDVEQLKELLSEK-----TKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVD 209 (424)
T ss_pred HHHHHHHHcCCEE---EEEecCCCCCcCHHHHHHHhccC-----ceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEE
Confidence 3566678889877 99999988889999999999752 225567889999999999999876 7899999
Q ss_pred ccc--------------------ccccc-----eeeeecCCCcccc---ccccc------c-c---cC----CcccCCCC
Q psy13453 98 GVL--------------------RRVYS-----SCLVPRGQKSLRT---TVLFH------F-L---FQ----HWQIPLGR 135 (764)
Q Consensus 98 a~l--------------------~~~y~-----s~ll~rd~~~l~~---~~s~~------~-d---~~----d~tle~SR 135 (764)
++. .++++ ++++.+.. .+.. .+... + + |. .+. .|+.
T Consensus 210 ~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~-~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e-~GT~ 287 (424)
T PLN02855 210 ACQSVPHMPVDVQTLGADFLVASSHKMCGPTGIGFLWGKSD-LLESMPPFLGGGEMISDVFLDHSTYAPPPSRFE-AGTP 287 (424)
T ss_pred hhhhcCCcCCCchhcCCCEEEeecccccCCCccEEEEEchh-hhhcCCCEecCCCceeeeecCccccCCChhhcc-CCCh
Confidence 952 12211 34444322 1111 00000 0 0 00 011 1233
Q ss_pred c-ccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC------ceeEEEEeeccccccccccccCc
Q psy13453 136 R-FRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS------MGLVCFRLKVRFWDKLDNLFGTI 208 (764)
Q Consensus 136 r-~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~------l~iV~Fry~P~~~~~~~~~~~~~ 208 (764)
. ...+.+++++.++-..|+.++.++..++++++.+.|++.++++++++++ .++++|++..
T Consensus 288 ~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~------------- 354 (424)
T PLN02855 288 AIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVEG------------- 354 (424)
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEECC-------------
Confidence 2 2335778889988888999999999999999999999999999997532 4789997531
Q ss_pred cCCccHHHHHHHHHHHhc-CcEEEEece--------eCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 209 SFGDNDLNKAVYDRIIAR-KVIYIVKGS--------FQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 209 ~~~~d~~n~~L~~~L~~~-G~~~vs~t~--------l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
.+ ...+.+.|.++ |...-+... +.-..++|++ .++.++++|++.+++.|+++...+
T Consensus 355 ---~~--~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~g~~~~iRiS-~~~ynt~~di~~l~~~l~~~~~~~ 419 (424)
T PLN02855 355 ---IH--PTDLSTFLDQQHGVAIRSGHHCAQPLHRYLGVNASARAS-LYFYNTKEEVDAFIHALKDTIAFF 419 (424)
T ss_pred ---cC--HHHHHHHhcccCCEEEechhhhhHHHHHHhCCCCeEEEE-eccCCCHHHHHHHHHHHHHHHHHH
Confidence 11 23577777766 764332210 1113579996 567788999999999999987664
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=3e-08 Score=111.52 Aligned_cols=152 Identities=13% Similarity=0.095 Sum_probs=110.2
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
..|...++|+ .++++.|.+ ..++++|||+|+..++.+.. + +...|+
T Consensus 63 ~~pt~~~Le~----~lA~l~g~~-----------~~l~~~sgt~Ai~~~l~al~----~---------------~GD~Vl 108 (394)
T PRK07050 63 ATPTSLALAQ----RLAEIEGGR-----------HALLQPSGLAAISLVYFGLV----K---------------AGDDVL 108 (394)
T ss_pred CCHHHHHHHH----HHHHHhCCC-----------eEEEeccHHHHHHHHHHHHh----C---------------CCCEEE
Confidence 3455555554 677777743 47899999999988876541 1 122577
Q ss_pred ecCCcchhHH----HHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHH
Q psy13453 636 TSDQSNSSVE----KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQ 711 (764)
Q Consensus 636 ~S~~aH~Sv~----kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~ 711 (764)
++...|.+.. ..+..+|++++.++.+ +.++|+++|++. +-+|+....++.+|.+.|+++|+++|+
T Consensus 109 ~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~-----~~~~l~~~i~~~------tklV~le~p~Np~~~~~di~~I~~ia~ 177 (394)
T PRK07050 109 IPDNAYGPNRDHGEWLARDFGITVRFYDPL-----IGAGIADLIQPN------TRLIWLEAPGSVTMEVPDVPAITAAAR 177 (394)
T ss_pred EecCCcccHHHHHHHHHHhcCeEEEEECCC-----CHHHHHHhcCCC------CeEEEEECCCCCCccHhhHHHHHHHHH
Confidence 7887887644 3456688888887643 346788877543 347778888888999999999999999
Q ss_pred hcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcC
Q psy13453 712 EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD 759 (764)
Q Consensus 712 ~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~ 759 (764)
++|+++++|+||+.+...-| +-.| +|.++.+++|+++...+
T Consensus 178 ~~gi~livD~a~a~~~~~~~----l~~G---aDi~v~S~tK~~~g~~~ 218 (394)
T PRK07050 178 ARGVVTAIDNTYSAGLAFKP----FEHG---VDISVQALTKYQSGGSD 218 (394)
T ss_pred HcCCEEEEECCcccccccCH----HHcC---CeEEEEECCceecCCCC
Confidence 99999999999988654322 2223 59999999999976543
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.8e-08 Score=108.99 Aligned_cols=173 Identities=15% Similarity=0.030 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCC
Q psy13453 560 CTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQ 639 (764)
Q Consensus 560 ~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~ 639 (764)
....+.++.+.+++++|.+. ...+|++|||+||..|+.++|... + ++.+++.+..
T Consensus 77 ~~~~~~~l~~~l~~~~~~~~---------~~v~~~~sgsea~~~al~~~~~~~-~---------------~~~ii~~~~~ 131 (413)
T cd00610 77 YNEPAVELAELLLALTPEGL---------DKVFFVNSGTEAVEAALKLARAYT-G---------------RKKIISFEGA 131 (413)
T ss_pred CCHHHHHHHHHHHHhCCCCC---------CEEEEcCcHHHHHHHHHHHHHHHc-C---------------CCeEEEECCC
Confidence 35677888888999988433 257899999999999999988531 1 1235666677
Q ss_pred cchhHHHHHHhCC------------CceEEEecCC------CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc
Q psy13453 640 SNSSVEKSAIIGD------------VPVRQLRSDD------NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD 701 (764)
Q Consensus 640 aH~Sv~kAa~~lG------------l~v~~Vp~d~------~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD 701 (764)
.|.+..-+....+ .+++.+|.+. +...|+++|++.+++. +..+.+|+++-..+.+|.+-
T Consensus 132 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~vi~~p~~~~~G~~~ 208 (413)
T cd00610 132 YHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEH---PEEVAAVIVEPIQGEGGVIV 208 (413)
T ss_pred cCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcC---CCCEEEEEEccccCCCCCcc
Confidence 7876665554432 2466777652 3456999999998652 22355666666666778877
Q ss_pred c----HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 702 N----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 702 p----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
+ +++|+++|++||+++++|.+|+++......+.....++ ..|-++++ |+++..+.+|++
T Consensus 209 ~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~~~-~~d~~t~s--K~l~~g~~~g~~ 271 (413)
T cd00610 209 PPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGV-EPDIVTLG--KGLGGGLPLGAV 271 (413)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhhHhhcCC-CCCeEEEc--ccccCccccEEE
Confidence 6 99999999999999999999986421111111112233 34666555 999987777765
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.1e-08 Score=108.78 Aligned_cols=157 Identities=11% Similarity=-0.001 Sum_probs=110.3
Q ss_pred HHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHH
Q psy13453 566 LVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVE 645 (764)
Q Consensus 566 ~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~ 645 (764)
++.+.+++++|.+. .+++++|+++|..++.+.... .+..+|+++...|.++.
T Consensus 95 ~Le~~la~~~g~~~-----------~i~~~sG~~a~~~~i~~l~~~-----------------~~g~~vi~~~~~h~s~~ 146 (410)
T PRK13392 95 LLERELADLHGKES-----------ALLFTSGYVSNDAALSTLGKL-----------------LPGCVILSDALNHASMI 146 (410)
T ss_pred HHHHHHHHHhCCCC-----------EEEECcHHHHHHHHHHHHhcC-----------------CCCCEEEEehhhhHHHH
Confidence 45567888888543 466677789988877632110 01225777888999999
Q ss_pred HHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccc
Q psy13453 646 KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAG 725 (764)
Q Consensus 646 kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg 725 (764)
.++...|..++.++.+ |.+.+++.+++.. ...+.+|+....++.+|.+-|+++|.++|++||+|++||.||+.
T Consensus 147 ~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~--~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~~~~~livDea~~~ 219 (410)
T PRK13392 147 EGIRRSGAEKQVFRHN-----DLADLEEQLASVD--PDRPKLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAV 219 (410)
T ss_pred HHHHHcCCeEEEEeCC-----CHHHHHHHHHhcc--CCCCEEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCccc
Confidence 9998889887776532 5667777776432 12456788888899999999999999999999999999999984
Q ss_pred cccccchhhh--hhcC-CCcccEEEEcCCccCCCCc
Q psy13453 726 SALLLPEYAH--LKRG-LEYVDSFDFNTHKWLLVNF 758 (764)
Q Consensus 726 ~~l~~~~~r~--~l~g-ie~aDSit~d~HK~l~~P~ 758 (764)
+.+ .+..+. ...+ .++.|-++.+++|+++.+-
T Consensus 220 g~~-g~~g~g~~~~~~~~~~~div~~tlsK~~g~~G 254 (410)
T PRK13392 220 GLY-GARGGGIAERDGLMDRIDMIQGTLAKAFGCLG 254 (410)
T ss_pred cCc-CCCCCchhhhccCCCCCcEEEEEChHhhhccc
Confidence 432 121111 1112 2456877789999988753
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.5e-08 Score=114.07 Aligned_cols=151 Identities=13% Similarity=0.098 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchh
Q psy13453 564 EVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSS 643 (764)
Q Consensus 564 E~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~S 643 (764)
-+++.++++++.|-+ ..+++++|+.++ .++... .. +...|++++..|.+
T Consensus 135 ~~aLE~~lA~leg~e-----------~ai~~~SG~aAi-~~il~l----l~---------------~GD~VI~~~~~y~~ 183 (464)
T PLN02509 135 RDALESLLAKLDKAD-----------RAFCFTSGMAAL-SAVTHL----IK---------------NGEEIVAGDDVYGG 183 (464)
T ss_pred HHHHHHHHHHHhCCC-----------EEEEeCcHHHHH-HHHHHH----hC---------------CCCEEEEcCCchhh
Confidence 444556778887643 356777777553 333321 11 11246778888877
Q ss_pred HHHH----HHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEE
Q psy13453 644 VEKS----AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHV 719 (764)
Q Consensus 644 v~kA----a~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHV 719 (764)
..+. +...|+.++.++. .|+++++++|.+. +-+|+....++.+|.+.||++|+++|++||++++|
T Consensus 184 t~~ll~~~l~~~G~~v~~vd~-----~d~e~l~~ai~~~------TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIV 252 (464)
T PLN02509 184 SDRLLSQVVPRSGVVVKRVNT-----TNLDEVAAAIGPQ------TKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLV 252 (464)
T ss_pred HHHHHHHHHHHCCeEEEEeCC-----CCHHHHHHhCCcC------CeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 6543 3457888887764 3688898888553 34888899999999999999999999999999999
Q ss_pred eccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcC--ceee
Q psy13453 720 DAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD--CSAM 763 (764)
Q Consensus 720 DaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~--~g~l 763 (764)
|.||+.+....+ . + ..+|.+..++|||++.|-+ .|++
T Consensus 253 D~A~a~~~~~~p----l--~-~gaDivv~S~tK~l~G~gdv~gG~v 291 (464)
T PLN02509 253 DNSIMSPVLSRP----L--E-LGADIVMHSATKFIAGHSDVMAGVL 291 (464)
T ss_pred ECCccccccCCh----h--h-cCCcEEEecCcccccCCCccceeEE
Confidence 999987654322 1 1 1469999999999998876 5654
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=98.87 E-value=1e-07 Score=107.29 Aligned_cols=159 Identities=12% Similarity=0.045 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcch
Q psy13453 563 LEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNS 642 (764)
Q Consensus 563 lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~ 642 (764)
.-.++.+.+++++|.+. .++.++|++||..++..++.. .++.+|+.....|.
T Consensus 92 ~~~~l~~~la~~~g~~~-----------~~~~~sG~~an~~ai~~l~~~-----------------~~~~~i~~~~~~h~ 143 (407)
T PRK09064 92 YHVELERELADLHGKEA-----------ALVFTSGYVSNDATLSTLAKL-----------------IPDCVIFSDELNHA 143 (407)
T ss_pred HHHHHHHHHHHHhCCCc-----------EEEECcHHHHHHHHHHHHhCC-----------------CCCCEEEEeCcchH
Confidence 34445557777777533 467777889999888765431 01235777778899
Q ss_pred hHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEecc
Q psy13453 643 SVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAA 722 (764)
Q Consensus 643 Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA 722 (764)
|+..++...|..+..++. .|+++|++.++... ...+-+|+.....+.+|.+.|+++|.++|++||+||+||.|
T Consensus 144 s~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~--~~~~~~v~~~~v~s~~G~~~~l~~i~~l~~~~~~~livDEa 216 (407)
T PRK09064 144 SMIEGIRRSRCEKHIFRH-----NDVAHLEELLAAAD--PDRPKLIAFESVYSMDGDIAPIAEICDLADKYNALTYLDEV 216 (407)
T ss_pred HHHHHHHHcCCcEEEECC-----CCHHHHHHHHHhcc--CCCCeEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEECC
Confidence 998888888887766553 37889999886431 12355777777888899999999999999999999999999
Q ss_pred ccccccccchhhh--hhcCC-CcccEEEEcCCccCCCC
Q psy13453 723 YAGSALLLPEYAH--LKRGL-EYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 723 ~Gg~~l~~~~~r~--~l~gi-e~aDSit~d~HK~l~~P 757 (764)
|+.+.+ .+.... ...++ +..|-++-+++|.++.+
T Consensus 217 ~~~G~~-g~~g~g~~~~~~~~~~~div~~t~sKa~g~~ 253 (407)
T PRK09064 217 HAVGMY-GPRGGGIAERDGLMDRIDIIEGTLAKAFGVM 253 (407)
T ss_pred Cccccc-CCCCCChHHhcCCCCCCeEEEEecchhhhcc
Confidence 984322 111111 11232 34588888999988754
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.4e-08 Score=110.22 Aligned_cols=156 Identities=18% Similarity=0.093 Sum_probs=107.0
Q ss_pred HHHHHHHHHHcCCCccccCCCCCCCcEEE-eCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchh
Q psy13453 565 VLVMNWLGKALGLPEEFLNCSPGPGGGII-QSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSS 643 (764)
Q Consensus 565 ~~v~~~la~llG~p~~~~~~~~~~~~Gvf-TsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~S 643 (764)
.++.+.+++++|.+++ ..++ |+|+++++..++.+. .. +...|+++.-++..
T Consensus 72 ~~lr~~ia~~~~~~~~---------~i~~~~~Ga~~~i~~~~~~~----~~---------------~gd~vlv~~p~y~~ 123 (361)
T PRK00950 72 PELREALSKYTGVPVE---------NIIVGGDGMDEVIDTLMRTF----ID---------------PGDEVIIPTPTFSY 123 (361)
T ss_pred HHHHHHHHHHhCCCHH---------HEEEeCCCHHHHHHHHHHHh----cC---------------CCCEEEEcCCChHH
Confidence 4455667777787653 4567 566677655444321 11 11246666665666
Q ss_pred HHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccc
Q psy13453 644 VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAY 723 (764)
Q Consensus 644 v~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~ 723 (764)
...+++..|++++.+|.++++.+|+++|++.+... +-+|+.+..++.+|.+-|+++|.++|+++|+|+++|.+|
T Consensus 124 ~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~li~De~y 197 (361)
T PRK00950 124 YEISAKAHGAKPVYAKREEDFSLDVDSVLNAITEK------TKVIFLCTPNNPTGNLIPEEDIRKILESTDALVFVDEAY 197 (361)
T ss_pred HHHHHHHcCCEEEEeecCCCCCcCHHHHHHHhccC------CCEEEEeCCCCCCCCCcCHHHHHHHHHHCCcEEEEECch
Confidence 66778889999999998888899999999988542 336666788999999999999999999999999999999
Q ss_pred cccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 724 AGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 724 Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
+.+. .......+...++ --+.-++.|.++.|
T Consensus 198 ~~~~--~~~~~~~~~~~~~-vi~~~S~SK~~g~~ 228 (361)
T PRK00950 198 VEFA--EYDYTPLALEYDN-LIIGRTFSKVFGLA 228 (361)
T ss_pred hhhC--ccchHHHHHhcCC-EEEEEeehHhhcCc
Confidence 7643 1122222222211 12335888988755
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.1e-08 Score=107.27 Aligned_cols=176 Identities=13% Similarity=0.077 Sum_probs=119.9
Q ss_pred ccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceE
Q psy13453 554 WLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633 (764)
Q Consensus 554 ~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~v 633 (764)
|........+.+.+.+++....|.+-. .....++|+|+|+++..++.+.. . ++..
T Consensus 63 Y~~~~g~~~lr~~ia~~~~~~~~~~~~------~~~~i~it~G~~~al~~~~~~~~----~---------------~gd~ 117 (391)
T PRK07309 63 YTGMAGLLELRQAAADFVKEKYNLDYA------PENEILVTIGATEALSASLTAIL----E---------------PGDK 117 (391)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhCCCCC------CCCcEEEeCChHHHHHHHHHHhc----C---------------CCCE
Confidence 433344577888888999887776321 01357899999999877665321 1 1124
Q ss_pred EEecCCcchhHHHHHHhCCCceEEEecCCC-CcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccHHHHHHH
Q psy13453 634 AYTSDQSNSSVEKSAIIGDVPVRQLRSDDN-GVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLEELGPI 709 (764)
Q Consensus 634 i~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~-g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~eIa~i 709 (764)
|++..-++.....+++..|.+++.+|++++ +.+|+++|++++++.. ..+-+|+.+..++.+|.+ +++++|+++
T Consensus 118 vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~---~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~ 194 (391)
T PRK07309 118 VLLPAPAYPGYEPIVNLVGAEIVEIDTTENDFVLTPEMLEKAILEQG---DKLKAVILNYPANPTGVTYSREQIKALADV 194 (391)
T ss_pred EEEeCCCCcchHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhhccC---CCeEEEEEECCCCCCCcCcCHHHHHHHHHH
Confidence 666667787788889999999999998754 5799999999986531 124467777788999986 469999999
Q ss_pred HHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 710 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 710 ~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
|++||+|+++|.+|+....-.+.......-...---+.-+++|.++.|
T Consensus 195 ~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 242 (391)
T PRK07309 195 LKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTILINGLSKSHAMT 242 (391)
T ss_pred HHHcCcEEEEEccccceeeCCCCCCCHHHhccCCEEEEecChhhccCc
Confidence 999999999999998654311111111100111124567899988755
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.6e-08 Score=106.48 Aligned_cols=161 Identities=14% Similarity=0.112 Sum_probs=123.7
Q ss_pred CchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEe
Q psy13453 557 SPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYT 636 (764)
Q Consensus 557 sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~ 636 (764)
+|...++|+ ++++.+|... .+.+++||.|+++|+++.- +.+...|++
T Consensus 33 G~~v~~FE~----~~ae~~G~k~-----------ava~~sgT~AL~laL~al~------------------ig~GDeVI~ 79 (374)
T COG0399 33 GPFVRRFEQ----AFAEYLGVKY-----------AVAVSSGTAALHLALLALA------------------IGPGDEVIV 79 (374)
T ss_pred ChHHHHHHH----HHHHHhCCCe-----------EEEecChHHHHHHHHHhcC------------------CCCCCEEEe
Confidence 788888887 7888888754 6899999999999987431 112336889
Q ss_pred cCCcchhHHHHHHhCCCceEEEecC-CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCC
Q psy13453 637 SDQSNSSVEKSAIIGDVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNI 715 (764)
Q Consensus 637 S~~aH~Sv~kAa~~lGl~v~~Vp~d-~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~gl 715 (764)
+..+-.+...+..+.|...+.|.+| +.+-||++.||++|.+.++ -++.| ...|..-|+++|.+||++||+
T Consensus 80 ps~TfvATan~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt~~tK----AIipV-----hl~G~~~dm~~i~~la~~~~l 150 (374)
T COG0399 80 PSFTFVATANAVLLVGAKPVFVDIDPDTLNIDPDLIEAAITPRTK----AIIPV-----HLAGQPCDMDAIMALAKRHGL 150 (374)
T ss_pred cCCchHHHHHHHHHcCCeEEEEecCCcccCCCHHHHHHHcccCCe----EEEEe-----hhccCCCCHHHHHHHHHHcCC
Confidence 9999999999999999999999999 5589999999999988643 22333 345666699999999999999
Q ss_pred EEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 716 WLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 716 wLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
|+.-|+|++-+...-.+ .+-.+..+-+++|-++|.+.+- .-|++
T Consensus 151 ~vIEDaAqa~Ga~y~gk---~vGt~Gd~~~fSF~~~K~ittg-EGGav 194 (374)
T COG0399 151 PVIEDAAQAHGATYKGK---KVGSFGDIGAFSFHATKNLTTG-EGGAV 194 (374)
T ss_pred eEEEEcchhccCeecCc---ccccccceEEEEecCCCCcccc-CceEE
Confidence 99999999887644332 2223445678889999987654 44443
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.1e-08 Score=109.14 Aligned_cols=186 Identities=15% Similarity=0.085 Sum_probs=126.5
Q ss_pred HHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccC
Q psy13453 540 GDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSK 619 (764)
Q Consensus 540 ad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~ 619 (764)
.+.+...+......|.......++.+.+.+|+.+..|++-+ .....++|+|+++++..++.+. ..
T Consensus 73 ~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~------~~~~I~vt~G~~~al~~~~~~l----~~----- 137 (413)
T PLN00175 73 KEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVD------PEKEVTVTSGCTEAIAATILGL----IN----- 137 (413)
T ss_pred HHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCC------CCCCEEEeCCHHHHHHHHHHHh----CC-----
Confidence 34444444332334555556678888888999888776432 0124788999999876655432 11
Q ss_pred CCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecC-CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcc
Q psy13453 620 NPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTC 698 (764)
Q Consensus 620 ~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d-~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~G 698 (764)
+...|++.+-.+.....+++..|.+++.||.+ +++.+|+++|++++.+. +-+|+.+..++.+|
T Consensus 138 ----------~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~~------~k~i~i~~p~NPtG 201 (413)
T PLN00175 138 ----------PGDEVILFAPFYDSYEATLSMAGAKIKTVTLRPPDFAVPEDELKAAFTSK------TRAILINTPHNPTG 201 (413)
T ss_pred ----------CCCEEEEeCCCchhHHHHHHHcCCEEEEEECCcccCCCCHHHHHHhcCcC------ceEEEecCCCCCCC
Confidence 12246677778888888899999999999997 45799999999998543 23667778889999
Q ss_pred ccc---cHHHHHHHHHhcCCEEEEeccccccccccchhhh--hhcCCCcccEEEEcCCccCCCC
Q psy13453 699 AFD---NLEELGPICQEYNIWLHVDAAYAGSALLLPEYAH--LKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 699 aiD---pl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~--~l~gie~aDSit~d~HK~l~~P 757 (764)
.+- .+++|+++|++|++|+++|.+|..... .++... .+.+...-.-+..++-|.++.|
T Consensus 202 ~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~-~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~ 264 (413)
T PLN00175 202 KMFTREELELIASLCKENDVLAFTDEVYDKLAF-EGDHISMASLPGMYERTVTMNSLGKTFSLT 264 (413)
T ss_pred cCCCHHHHHHHHHHHHHcCcEEEEecccCcccc-CCcccChhhCCCCcCcEEEEecchhhccCc
Confidence 984 688899999999999999999987532 111111 1222211123556889988755
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.7e-08 Score=111.22 Aligned_cols=182 Identities=17% Similarity=0.210 Sum_probs=115.0
Q ss_pred CccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccc-c
Q psy13453 551 GFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDI-R 629 (764)
Q Consensus 551 ~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~-~ 629 (764)
-..|..+|....+|+.+ +++||.+. .++|..|+.++..+..+.... .+.+ + +. .
T Consensus 67 DD~Y~gdpSv~~Lee~v----ael~G~E~-----------alpthqGRgaE~Il~~~~~~~----~g~e---~---g~~~ 121 (467)
T TIGR02617 67 DEAYSGSRSYYALAESV----KNIFGYQY-----------TIPTHQGRGAEQIYIPVLIKK----REQE---K---GLDR 121 (467)
T ss_pred CcccccCchHHHHHHHH----HHHhCCce-----------EEECCCCchHHHHHHHhhccc----cccc---c---cccc
Confidence 35688999999999855 66778753 689989999998876544321 0000 0 00 0
Q ss_pred CceEEEecCCcchhHHH-HHHhCCCceEEEecC----------CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCC-c
Q psy13453 630 NKLVAYTSDQSNSSVEK-SAIIGDVPVRQLRSD----------DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTG-T 697 (764)
Q Consensus 630 ~~~vi~~S~~aH~Sv~k-Aa~~lGl~v~~Vp~d----------~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~-~ 697 (764)
.+. +++...|+---+ .+.+.|..++.++++ .+|.||+++|+++|++... ...+ ++..+.-++. -
T Consensus 122 ~~~--~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~-~~i~-~v~~tlt~N~~G 197 (467)
T TIGR02617 122 SKM--VAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGP-NNVP-YIVATITCNSAG 197 (467)
T ss_pred ccc--ccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCC-CCce-eeeeeEEEecCC
Confidence 011 345555665434 355678776665432 3689999999999986422 1233 3333332332 3
Q ss_pred c---ccccHHHHHHHHHhcCCEEEEecccccc-ccccchh---------hhhh-cCCCcccEEEEcCCccCCCCcCce
Q psy13453 698 C---AFDNLEELGPICQEYNIWLHVDAAYAGS-ALLLPEY---------AHLK-RGLEYVDSFDFNTHKWLLVNFDCS 761 (764)
Q Consensus 698 G---aiDpl~eIa~i~~~~glwLHVDaA~Gg~-~l~~~~~---------r~~l-~gie~aDSit~d~HK~l~~P~~~g 761 (764)
| ..++|.+++++|++||+.+|+|||--+- +.+..+. +... +-.+.+||+++|+-|-+++|.|+-
T Consensus 198 Gqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgApvGg~ 275 (467)
T TIGR02617 198 GQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMVPMGGL 275 (467)
T ss_pred CEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCCcccce
Confidence 4 3478899999999999999999985441 2221110 1111 112568999999999999998854
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.86 E-value=5e-08 Score=109.87 Aligned_cols=219 Identities=14% Similarity=0.058 Sum_probs=157.0
Q ss_pred eeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCcee
Q psy13453 22 YESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKV 96 (764)
Q Consensus 22 YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHV 96 (764)
+.|...++-.|+.. +.||+++++.+|.+++++.|++. +-+++-|.-+..+|++-|+++|++ +.|+=|
T Consensus 126 ~pw~~~~~~~Ga~v---~~i~~~~~g~~~~~~~~~~i~~~-----Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~V 197 (405)
T COG0520 126 VPWQELAKRTGAKV---RVIPLDDDGLLDLDALEKLITPK-----TKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLV 197 (405)
T ss_pred HHHHHHHHhcCcEE---EEEecCCCCCcCHHHHHHhcCCC-----ceEEEEECccccccccchHHHHHHHHHHcCCEEEE
Confidence 77888999999977 99999999999999999988763 335568999999999999999997 889999
Q ss_pred cccc--------------------ccc-----cc-eeeeecCCCcccccc--cc------cccc--------CCcccCCC
Q psy13453 97 GGVL--------------------RRV-----YS-SCLVPRGQKSLRTTV--LF------HFLF--------QHWQIPLG 134 (764)
Q Consensus 97 Da~l--------------------~~~-----y~-s~ll~rd~~~l~~~~--s~------~~d~--------~d~tle~S 134 (764)
||+. .|+ .+ ++|..|. +.+.... .. ..+. .-+-+|.+
T Consensus 198 Daaq~~~h~~idv~~l~~Df~afsgHKwl~gP~GiGvLy~r~-~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~g 276 (405)
T COG0520 198 DAAQAAGHLPIDVQELGCDFLAFSGHKWLLGPTGIGVLYVRK-ELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAG 276 (405)
T ss_pred ECccccCccCCCchhcCCCEEEEcccccccCCCceEEEEEch-HHHhhcCCcccCCCceeeecccccccccCcchhhccC
Confidence 9942 233 22 3444443 3232210 00 0111 11222333
Q ss_pred C--cccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC---CceeEEEEeeccccccccccccCcc
Q psy13453 135 R--RFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPP---SMGLVCFRLKVRFWDKLDNLFGTIS 209 (764)
Q Consensus 135 R--r~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P---~l~iV~Fry~P~~~~~~~~~~~~~~ 209 (764)
- -..++.+=++++++-..|+.++-++..++++++.+.++++|++++++++ ...+++|....
T Consensus 277 Tpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~-------------- 342 (405)
T COG0520 277 TPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKG-------------- 342 (405)
T ss_pred CchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeCC--------------
Confidence 2 2334566788999999999999999999999999999999999999987 48999997642
Q ss_pred CCccHHHHHHHHHHHhcCcEEEEecee--------CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13453 210 FGDNDLNKAVYDRIIARKVIYIVKGSF--------QDRLFMRFAICSSQTEESDVQLGWNEIRTATE 268 (764)
Q Consensus 210 ~~~d~~n~~L~~~L~~~G~~~vs~t~l--------~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~ 268 (764)
. -...+...|.++|.+..+...- .-...+|+++ .+.+|++||+.|++.|+++.+
T Consensus 343 --~--~~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~~~~~iR~S~-~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 343 --I--HPHDVATLLDEKGIAVRAGHHCAQPLHRLLGVDATIRASL-HLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred --C--CHHHHHHHHHhCCeEEEeccccccHHHHhcCCCCceEEEE-eecCCHHHHHHHHHHHHHHhh
Confidence 1 1357888999999543333111 1123399964 455579999999999998753
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.9e-08 Score=111.74 Aligned_cols=158 Identities=13% Similarity=-0.014 Sum_probs=109.6
Q ss_pred cCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEe-CChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceE
Q psy13453 555 LSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQ-STASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633 (764)
Q Consensus 555 ~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfT-sGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~v 633 (764)
..++.+.++-+++.+.+++++|.+++ ...+|+ ++||.++..++.... .+ +.++
T Consensus 34 hr~~~f~~~~~~~r~~l~~l~~~~~~--------~~v~f~~gs~T~a~~~~~~~l~----~~--------------~~l~ 87 (361)
T TIGR01366 34 HRQAPVKNLVGRVREGLAELFSLPDG--------YEVILGNGGATAFWDAATFGLI----EK--------------KSLH 87 (361)
T ss_pred cCChHHHHHHHHHHHHHHHHhCCCCC--------ceEEEECCchhHHHHHHHHhcc----cc--------------cccE
Confidence 56788889999999999999998653 356776 559998766654321 00 1223
Q ss_pred EEecCCcchh-HHHHHHh---CCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHH
Q psy13453 634 AYTSDQSNSS-VEKSAII---GDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPI 709 (764)
Q Consensus 634 i~~S~~aH~S-v~kAa~~---lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i 709 (764)
+ +...|.+ +.+.+.. .+ .++.++++....++.+ +. ..+-+|++|..+|.+|.+.|+++|
T Consensus 88 i--~~G~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~-----~~------~~~~lV~~~h~et~tG~~~pi~~I--- 150 (361)
T TIGR01366 88 L--SFGEFSSKFAKAVKLAPWLG-EPIIVTADPGSAPEPQ-----AD------PGVDVIAWAHNETSTGVAVPVRRP--- 150 (361)
T ss_pred E--ecCHHHHHHHHHHHhhhccC-CceEEecCCCCCCCCc-----cC------CCCCEEEEcccCCccceecccccc---
Confidence 3 3333322 2222332 33 6777777654444431 22 235599999999999999999988
Q ss_pred HHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 710 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 710 ~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
++++|+.+.|||+++.+...++- + .+|.+.+++|||++.|-|.+++
T Consensus 151 ~~~~g~~~iVDavqs~g~~~idv-----~---~~D~~~~s~~K~lg~~~Gl~~~ 196 (361)
T TIGR01366 151 EGSDDALVVIDATSGAGGLPVDI-----A---ETDVYYFAPQKNFASDGGLWLA 196 (361)
T ss_pred cccCCCeEEEEcCccccCCCCCH-----H---HCCEEEEEchhhcCCCCceEEE
Confidence 58899999999999988776642 1 2599999999999988665553
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-07 Score=105.67 Aligned_cols=143 Identities=12% Similarity=0.054 Sum_probs=100.9
Q ss_pred CcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecC--CCCcc
Q psy13453 589 GGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSD--DNGVL 666 (764)
Q Consensus 589 ~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d--~~g~m 666 (764)
...++|+|+|+++.+++.+.. . ++..|++++-++.....++...|++++.++++ +++.+
T Consensus 97 ~~ii~t~G~t~al~~~~~~l~-----~--------------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~ 157 (403)
T TIGR01265 97 DDVVLTSGCSQAIEICIEALA-----N--------------PGANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEI 157 (403)
T ss_pred HHEEEecChHHHHHHHHHHhC-----C--------------CCCEEEEeCCCchhHHHHHHHcCCEEEEecCCcccCCcc
Confidence 357899999999887776532 1 11246677778888888888999999988875 35789
Q ss_pred cHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc---cHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCc-
Q psy13453 667 RGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD---NLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY- 742 (764)
Q Consensus 667 d~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD---pl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~- 742 (764)
|++++++.+.+. +.+|+.+..++.+|.+- ++++|.++|+++|+|+++|.+|+....-.+.+. .+..+..
T Consensus 158 d~~~l~~~~~~~------~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~ 230 (403)
T TIGR01265 158 DLDGLEALADEK------TVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFI-PMASFASI 230 (403)
T ss_pred CHHHHHHHhCcC------ccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCcc-chhhhccC
Confidence 999999987543 33677788889999984 689999999999999999999986542111111 1111110
Q ss_pred cc-EEEEcCCccCCCC
Q psy13453 743 VD-SFDFNTHKWLLVN 757 (764)
Q Consensus 743 aD-Sit~d~HK~l~~P 757 (764)
.. -+.-++-|.++.|
T Consensus 231 ~~vi~~~S~SK~~~~p 246 (403)
T TIGR01265 231 VPVLSLGGISKRWVVP 246 (403)
T ss_pred CcEEEEeecccccCCC
Confidence 11 2345889986666
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.4e-07 Score=105.78 Aligned_cols=194 Identities=14% Similarity=0.048 Sum_probs=126.5
Q ss_pred HHHHHHHHHhhccc---CccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHh
Q psy13453 537 SIVGDMLSGAFGLI---GFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMI 613 (764)
Q Consensus 537 ~~lad~l~~~lN~n---~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~ 613 (764)
..+.+.+...++.. ...|........+.+.+.+++....+.+- .....++|+|+|+++..++... .
T Consensus 49 ~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~-------~~~~i~~t~G~~~al~~~~~~l----~ 117 (394)
T PRK06836 49 AAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPL-------TADHIVMTCGAAGALNVALKAI----L 117 (394)
T ss_pred HHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCC-------CcCcEEEeCChHHHHHHHHHHh----c
Confidence 44555555544422 23343444555666667777776655421 1135789999999876665432 1
Q ss_pred hhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCCC-CcccHHHHHHHHHHhhhcCCCceEEEEee
Q psy13453 614 NHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDN-GVLRGDALLTAVKEDLAKGLIPCCLIATL 692 (764)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~-g~md~~~Le~~I~~~~~~G~~p~~Vvata 692 (764)
. ++..|++++-++.....++...|++++.+|++++ +.+|+++|++++++. +-+|+.+.
T Consensus 118 ~---------------~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~~~------~~~v~~~~ 176 (394)
T PRK06836 118 N---------------PGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTDTDTFQPDLDALEAAITPK------TKAVIINS 176 (394)
T ss_pred C---------------CCCEEEEcCCCCccHHHHHHHcCCEEEEEecCCccCcCCHHHHHhhcCcC------ceEEEEeC
Confidence 1 1224677888888888888889999999999866 789999999998653 33667778
Q ss_pred ccCCcccccc---HHHHHHHHHh------cCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC-cCcee
Q psy13453 693 GTTGTCAFDN---LEELGPICQE------YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSA 762 (764)
Q Consensus 693 GTT~~GaiDp---l~eIa~i~~~------~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~ 762 (764)
.++.+|.+-| +++|+++|++ ||+|+.+|.+|.....-...........++ .-+..++.|.++.| .-+|.
T Consensus 177 p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~i~~~S~SK~~~~pGlRiG~ 255 (394)
T PRK06836 177 PNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYYDN-SIVVYSFSKSLSLPGERIGY 255 (394)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHHccCc-EEEEecchhhccCcceeeEE
Confidence 8999999865 6667777888 899999999998643211111111222221 35667899988754 34454
Q ss_pred e
Q psy13453 763 M 763 (764)
Q Consensus 763 l 763 (764)
+
T Consensus 256 ~ 256 (394)
T PRK06836 256 I 256 (394)
T ss_pred E
Confidence 3
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.6e-08 Score=111.04 Aligned_cols=152 Identities=14% Similarity=0.051 Sum_probs=109.0
Q ss_pred cCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEE
Q psy13453 555 LSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVA 634 (764)
Q Consensus 555 ~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi 634 (764)
...|....+|+ .+++++|.+. .+++++|++|+..++.+. .. +.-.|
T Consensus 61 ~~~p~~~~le~----~lA~l~g~~~-----------~i~~ssG~~Ai~~~l~al----l~---------------~GD~V 106 (398)
T PRK08249 61 NTNPTVQAFEE----KVRILEGAEA-----------ATAFSTGMAAISNTLYTF----LK---------------PGDRV 106 (398)
T ss_pred CCChHHHHHHH----HHHHHhCCCe-----------EEEeCChHHHHHHHHHHh----cC---------------CCCEE
Confidence 34566666665 6677777533 577888888877766532 11 11257
Q ss_pred EecCCcchhHHH----HHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHH
Q psy13453 635 YTSDQSNSSVEK----SAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPIC 710 (764)
Q Consensus 635 ~~S~~aH~Sv~k----Aa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~ 710 (764)
+++...|.+... .+...|++++.++. .|+++++++|++. +-+|++...++.+|.+-|+++|+++|
T Consensus 107 i~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~-----~d~e~l~~~i~~~------tklV~ie~p~NPtg~v~dl~~I~~la 175 (398)
T PRK08249 107 VSIKDTYGGTNKIFTEFLPRMGVDVTLCET-----GDHEQIEAEIAKG------CDLLYLETPTNPTLKIVDIERLAAAA 175 (398)
T ss_pred EEcCCchHHHHHHHHHHHhhCCeEEEEcCC-----CCHHHHHHhcCCC------CeEEEEECCCCCCCccCCHHHHHHHH
Confidence 788888876533 34567887776653 5899999998653 33777778889999999999999999
Q ss_pred HhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCc
Q psy13453 711 QEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNF 758 (764)
Q Consensus 711 ~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~ 758 (764)
+++|++++||++|+......+ .. ..+|.++.++||+++.+-
T Consensus 176 ~~~gi~livD~t~a~~~~~~~----l~---~~~Divv~S~sK~l~g~~ 216 (398)
T PRK08249 176 KKVGALVVVDNTFATPINQNP----LA---LGADLVIHSATKFLSGHA 216 (398)
T ss_pred HHcCCEEEEECCcCccccCCc----hh---hCCCEEeccCceecCCCC
Confidence 999999999999986443221 11 146999999999998654
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.7e-08 Score=109.71 Aligned_cols=176 Identities=11% Similarity=0.002 Sum_probs=119.8
Q ss_pred ccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceE
Q psy13453 554 WLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633 (764)
Q Consensus 554 ~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~v 633 (764)
|...+....+.+.+.+|+.+..|++-+ ....++|+|+|+++..++.+.. . +...
T Consensus 66 Y~~~~g~~~lr~~ia~~~~~~~g~~~~-------~~~i~it~G~~~al~~~~~~~~----~---------------~gd~ 119 (398)
T PRK08363 66 YGPSEGLPELREAIVKREKRKNGVDIT-------PDDVRVTAAVTEALQLIFGALL----D---------------PGDE 119 (398)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCCC-------hhhEEEeCCHHHHHHHHHHHhC----C---------------CCCE
Confidence 444556677888888888877664321 1367899999998877665331 1 1225
Q ss_pred EEecCCcchhHHHHHHhCCCceEEE-ecCC-CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc---HHHHHH
Q psy13453 634 AYTSDQSNSSVEKSAIIGDVPVRQL-RSDD-NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN---LEELGP 708 (764)
Q Consensus 634 i~~S~~aH~Sv~kAa~~lGl~v~~V-p~d~-~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp---l~eIa~ 708 (764)
|++++-++.....++...|..++.+ +.++ .+.+|+++|++++.+. +-+|+.+..++.+|.+-+ +++|++
T Consensus 120 Vl~~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~~~~~l~~ 193 (398)
T PRK08363 120 ILIPGPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKITEK------TKAIAVINPNNPTGALYEKKTLKEILD 193 (398)
T ss_pred EEEcCCCCcchHHHHHHcCCEEEEeccccccCCcCCHHHHHhhCCcc------eEEEEEECCCCCCCcCcCHHHHHHHHH
Confidence 7788888888888999999887777 5554 4579999999888543 336667788899998755 899999
Q ss_pred HHHhcCCEEEEeccccccccccchhhhhhcCCCcc-cEE-EEcCCccCC-CCcCceee
Q psy13453 709 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYV-DSF-DFNTHKWLL-VNFDCSAM 763 (764)
Q Consensus 709 i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~a-DSi-t~d~HK~l~-~P~~~g~l 763 (764)
+|+++|+|+++|.||+.... .++... +..+... ..| .-+++|+++ ...-+|.+
T Consensus 194 ~a~~~~~~li~Deay~~~~~-~~~~~~-~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~ 249 (398)
T PRK08363 194 IAGEHDLPVISDEIYDLMTY-EGKHVS-PGSLTKDVPVIVMNGLSKVYFATGWRLGYI 249 (398)
T ss_pred HHHHcCeEEEEhhhhhhhcc-CCcccC-HHHcCcCCcEEEEecchhccCCccceEEEE
Confidence 99999999999999986432 111111 1111111 234 458999854 44455554
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.7e-09 Score=114.50 Aligned_cols=163 Identities=10% Similarity=-0.012 Sum_probs=115.2
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
.++.+.++-+++.+.++++||.+++ ...+|++|++++-+-|.. ...... + .+-+++.
T Consensus 42 r~~~f~~~~~~~~~~l~~l~~~~~~--------~~v~~~~gsgt~~~Ea~~---~nl~~~-----------g-~~~l~i~ 98 (360)
T PRK05355 42 RSKEFEAVAEEAEADLRELLNIPDN--------YKVLFLQGGASLQFAMVP---MNLLGG-----------G-KKADYVD 98 (360)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCC--------cEEEEEcCCchHHHHHHH---HhcCCC-----------C-CeEEEEE
Confidence 3455568999999999999998653 346677666655444433 121111 0 1235777
Q ss_pred ecCCcchhHHHHHHhCCCceEEEecCC-CCcccHHHHHH-HHHHhhhcCCCceEEEEeeccCCccccc-cHHHHHHHHHh
Q psy13453 636 TSDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLT-AVKEDLAKGLIPCCLIATLGTTGTCAFD-NLEELGPICQE 712 (764)
Q Consensus 636 ~S~~aH~Sv~kAa~~lGl~v~~Vp~d~-~g~md~~~Le~-~I~~~~~~G~~p~~VvataGTT~~GaiD-pl~eIa~i~~~ 712 (764)
.+...|-+.+ -|+..|.. ..++++. .|..+..++++ +|+++ +-+|..|...|.+|... ||.+|
T Consensus 99 ~G~fg~r~~~-~a~~~g~~-~~~~~~~~~g~~~~~~~~~~~l~~~------~~~V~~th~eTstGv~~~~i~~i------ 164 (360)
T PRK05355 99 TGSWSKKAIK-EAKKYGEV-NVAASSEDDGFTYIPPLDEWQLSDD------AAYVHYTSNETIDGTEFHELPDT------ 164 (360)
T ss_pred CCHHHHHHHH-HHHHhCCc-eEEecccccCCCCCCChhhccCCCC------CCEEEEccCCCcceEecCccccc------
Confidence 8888887754 45555655 6666664 67777766666 55443 45999999999999997 77777
Q ss_pred cCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 713 YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 713 ~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
||+.+.|||+++.+....+- +.+ |.++++.||+++ |.|.|++|
T Consensus 165 ~g~l~vVDavss~g~~~idv-----~~~---d~~~~ssqK~lg-P~Glg~l~ 207 (360)
T PRK05355 165 GDVPLVADMSSDILSRPIDV-----SKF---GLIYAGAQKNIG-PAGLTIVI 207 (360)
T ss_pred CCCcEEEEcCccccCccCCH-----HHc---cEEEEecccccc-CCceEEEE
Confidence 89999999999887766542 223 799999999987 99999885
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.2e-08 Score=110.65 Aligned_cols=152 Identities=16% Similarity=0.132 Sum_probs=108.5
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
..|....+|+. ++++.|.+ ..++++||++|+..++.+. .. +...|+
T Consensus 48 gnPt~~~lE~~----lA~l~g~~-----------~~~~~~sG~~Ai~~al~al----l~---------------~GD~Vl 93 (377)
T TIGR01324 48 GTLTHFALQDA----MCELEGGA-----------GCYLYPSGLAAVTNSILAF----VK---------------AGDHVL 93 (377)
T ss_pred CCccHHHHHHH----HHHHhCCC-----------cEEEECcHHHHHHHHHHHh----cC---------------CCCEEE
Confidence 45777777774 55666643 3689999999988877543 11 112466
Q ss_pred ecCCcchhHHHH----HHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHH
Q psy13453 636 TSDQSNSSVEKS----AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQ 711 (764)
Q Consensus 636 ~S~~aH~Sv~kA----a~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~ 711 (764)
+++..+.+.... +...|++++.++.+ +.++|+++|++. +-+|+....++.+|.+.||++|+++|+
T Consensus 94 ~~~~~y~~t~~~~~~~~~~~gi~v~~~d~~-----~~e~l~~~i~~~------tklV~lesp~Np~g~~~dl~~I~~la~ 162 (377)
T TIGR01324 94 MVDSAYEPTRYFCDIVLKRMGVDITYYDPL-----IGEDIATLIQPN------TKVLFLEAPSSITFEIQDIPAIAKAAR 162 (377)
T ss_pred EcCCCcHHHHHHHHHHHHhcCcEEEEECCC-----CHHHHHHhcCCC------ceEEEEECCCCCCCcHHHHHHHHHHHH
Confidence 666666554432 34467777766432 227788877653 348888889999999999999999999
Q ss_pred hcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcC
Q psy13453 712 EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD 759 (764)
Q Consensus 712 ~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~ 759 (764)
++|+|+.||++|+.+...-| .-. .+|-+..+.|||++.+-+
T Consensus 163 ~~g~~livD~t~a~g~~~~p----l~~---gaDivv~S~tK~l~G~~d 203 (377)
T TIGR01324 163 NPGIVIMIDNTWAAGLLFKP----LEH---GVDISIQAGTKYLVGHSD 203 (377)
T ss_pred HcCCEEEEECCCccccccCc----ccc---CceEEEecCceeccCCCC
Confidence 99999999999998765432 112 469999999999998755
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-07 Score=104.87 Aligned_cols=175 Identities=15% Similarity=0.147 Sum_probs=121.6
Q ss_pred ccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCC-cEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccC
Q psy13453 552 FSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPG-GGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRN 630 (764)
Q Consensus 552 ~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~-~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~ 630 (764)
..|........+.+.+.+|+.+..|++-+ .. ..++|+|++++...++.+.. .. + . +
T Consensus 30 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~-------~~~~Iiit~Gs~~ai~~~~~~~~----~~-g----------~-~ 86 (350)
T TIGR03537 30 SQYPSALGTKALREAISGWFERRFGVKLD-------PDAQVLPSAGSKEAIFHFPLVFI----DP-E----------E-D 86 (350)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCCC-------CCCcEEEcCChHHHHHHHHHHHc----CC-C----------C-C
Confidence 34554445678889999999888886432 12 57899999998766554321 10 0 0 0
Q ss_pred ceEEEecCCcchhHHHHHHhCCCceEEEecC-C-CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc---HHH
Q psy13453 631 KLVAYTSDQSNSSVEKSAIIGDVPVRQLRSD-D-NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN---LEE 705 (764)
Q Consensus 631 ~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d-~-~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp---l~e 705 (764)
+..|++..-++.....++...|++++.||.+ + .+.+|++++++++.+. +-+|+++..++.+|.+-+ +++
T Consensus 87 ~d~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~------~~~i~i~~p~NPtG~~~~~~~~~~ 160 (350)
T TIGR03537 87 RRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILEE------TKIVWINYPHNPTGATAPRSYLKE 160 (350)
T ss_pred CceEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhhhc------cEEEEEeCCCCCcCcccCHHHHHH
Confidence 1247778888889999999999999999997 3 3569999999998764 336677778999998876 888
Q ss_pred HHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEE-cCCccCCCC
Q psy13453 706 LGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDF-NTHKWLLVN 757 (764)
Q Consensus 706 Ia~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~-d~HK~l~~P 757 (764)
|+++|++||+++.+|.+|+-...-. .... +.....-..|.+ +++|.++.|
T Consensus 161 l~~~a~~~~~~ii~De~y~~~~~~~-~~~~-~~~~~~~~~i~~~s~SK~~g~~ 211 (350)
T TIGR03537 161 TIAMCREHGIILCSDECYTEIYFGE-PPHS-ALEVGIENVLAFHSLSKRSGMT 211 (350)
T ss_pred HHHHHHHcCcEEEEeccccccccCC-CCCc-hhhcCcCCEEEEeecccccCCc
Confidence 9999999999999999998543211 1100 111111123444 899988655
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.3e-08 Score=110.93 Aligned_cols=152 Identities=17% Similarity=0.089 Sum_probs=107.8
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
..|...++|+ .++++.|.+. ++.+++|++|+..++.+.. . +...|+
T Consensus 59 ~~p~~~~Le~----~lA~~~g~~~-----------~i~~~sG~~Ai~~~l~all----~---------------~Gd~Vl 104 (388)
T PRK07811 59 GNPTRTALEE----QLAALEGGAY-----------GRAFSSGMAATDCLLRAVL----R---------------PGDHIV 104 (388)
T ss_pred CCccHHHHHH----HHHHHhCCCc-----------eEEeCCHHHHHHHHHHHHh----C---------------CCCEEE
Confidence 3456666665 5677777643 4667788888877765441 1 112467
Q ss_pred ecCCcchhHHHHHH-h---CCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHH
Q psy13453 636 TSDQSNSSVEKSAI-I---GDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQ 711 (764)
Q Consensus 636 ~S~~aH~Sv~kAa~-~---lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~ 711 (764)
++...|.+...... . .|+.++.++. .|+++|+++|.++ +-+|+....++.+|.+.|+++|+++|+
T Consensus 105 ~~~~~y~~t~~~~~~~~~~~gi~~~~~d~-----~d~e~l~~~i~~~------tklV~ie~p~NPtg~~~dl~~I~~la~ 173 (388)
T PRK07811 105 IPNDAYGGTFRLIDKVFTRWGVEYTPVDL-----SDLDAVRAAITPR------TKLIWVETPTNPLLSITDIAALAELAH 173 (388)
T ss_pred EcCCCchHHHHHHHHhCcCCCeEEEEeCC-----CCHHHHHHhcCcC------CeEEEEECCCCCcceecCHHHHHHHHH
Confidence 77777775444322 2 4666666654 4899999988654 337888888899999999999999999
Q ss_pred hcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcC
Q psy13453 712 EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD 759 (764)
Q Consensus 712 ~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~ 759 (764)
++|++++||.+|+.+....| . + ..+|.++.+++|+++.|-+
T Consensus 174 ~~gi~lIvD~a~a~~~~~~p----~--~-~gaDivv~S~sK~l~g~~~ 214 (388)
T PRK07811 174 DAGAKVVVDNTFASPYLQQP----L--A-LGADVVVHSTTKYIGGHSD 214 (388)
T ss_pred HcCCEEEEECCCCccccCCc----h--h-hCCcEEEecCceeecCCCC
Confidence 99999999999987544322 1 1 1469999999999998754
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.6e-08 Score=110.55 Aligned_cols=152 Identities=16% Similarity=0.126 Sum_probs=110.4
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
..|....+|+ .++++.|.. ..++|+||++++..++.+.. . +...|+
T Consensus 51 ~npt~~~Le~----~lA~leg~e-----------~ivvt~gg~~Ai~~~l~all----~---------------~Gd~Il 96 (388)
T PRK08861 51 GNPNRGLLEQ----TLSELESGK-----------GAVVTNCGTSALNLWVSALL----G---------------PDDLIV 96 (388)
T ss_pred CCchHHHHHH----HHHHHhCCC-----------eEEEECCHHHHHHHHHHHHc----C---------------CCCEEE
Confidence 4566666666 566776642 47899999999877775431 1 112466
Q ss_pred ecCCcchhHHHHH----HhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHH
Q psy13453 636 TSDQSNSSVEKSA----IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQ 711 (764)
Q Consensus 636 ~S~~aH~Sv~kAa----~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~ 711 (764)
++...|.+..+.. ...|+.++.++. .|++++++++.+. +-+|+++..++.+|.+-|+++|+++|+
T Consensus 97 ~~~~~y~~~~~~~~~~~~~~gi~v~~vd~-----~d~e~l~~~i~~~------tklV~lesP~NPtG~v~dl~~I~~la~ 165 (388)
T PRK08861 97 APHDCYGGTYRLFNTRANKGDFKVQFVDQ-----SDAAALDAALAKK------PKLILLETPSNPLVRVVDIAELCQKAK 165 (388)
T ss_pred EcCCchHHHHHHHHHHHhcCCeEEEEECC-----CCHHHHHHhcCcC------CeEEEEECCCCCCCcccCHHHHHHHHH
Confidence 7777776544432 234566666642 5789999888654 348888899999999999999999999
Q ss_pred hcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcC
Q psy13453 712 EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD 759 (764)
Q Consensus 712 ~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~ 759 (764)
++|++++||.||+.+....|- . + .||-++.+.|||++.|-+
T Consensus 166 ~~gi~vIvDea~~~~~~~~pl-~-----~-GaDivv~S~tK~l~G~~d 206 (388)
T PRK08861 166 AVGALVAVDNTFLTPVLQKPL-E-----L-GADFVIHSTTKYINGHSD 206 (388)
T ss_pred HcCCEEEEECCccccccCCCc-c-----c-CCCEEEeecceeccCCCc
Confidence 999999999999876543221 1 1 479999999999998865
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.9e-08 Score=109.96 Aligned_cols=152 Identities=16% Similarity=0.102 Sum_probs=108.0
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
..|...++|+ .+++++|.+. .++|+||++|+..++.+... +...|+
T Consensus 74 ~~Pt~~~LE~----~lA~l~g~~~-----------~l~~~sG~~Ai~~al~al~~-------------------~GD~Vl 119 (418)
T PLN02242 74 FNPTVLNLGR----QMAALEGTEA-----------AYCTASGMSAISSVLLQLCS-------------------SGGHVV 119 (418)
T ss_pred CChhHHHHHH----HHHHHhCCCe-----------EEEEccHHHHHHHHHHHHhC-------------------CCCEEE
Confidence 4566666665 6677777754 57899999999888765421 112456
Q ss_pred ecCCcchhHHHHH-----HhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHH
Q psy13453 636 TSDQSNSSVEKSA-----IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPIC 710 (764)
Q Consensus 636 ~S~~aH~Sv~kAa-----~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~ 710 (764)
++...+......+ +..|+.++.++.+ |+++|+++|++. .+-+|+....++.+|.+-|+++|+++|
T Consensus 120 ~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d~~-----d~e~l~~~i~~~-----~tklV~lesp~NPtG~v~dl~~I~~la 189 (418)
T PLN02242 120 ASNTLYGGTHALLAHFLPRKCNITTTFVDIT-----DLEAVKKAVVPG-----KTKVLYFESISNPTLTVADIPELARIA 189 (418)
T ss_pred EcCCcHHHHHHHHHHhhhhccCceEEEcCCC-----CHHHHHHhcCcC-----CCEEEEEecCCCCCCcccCHHHHHHHH
Confidence 6666544443332 3467776666543 799999988542 244777888889999999999999999
Q ss_pred HhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcC
Q psy13453 711 QEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD 759 (764)
Q Consensus 711 ~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~ 759 (764)
++||+|++||.||+. ..+.+. . -| +|.+..+++|+++.+-.
T Consensus 190 ~~~gi~livDea~~~-~~~~~~-~---~g---~divv~S~SK~l~g~g~ 230 (418)
T PLN02242 190 HEKGVTVVVDNTFAP-MVLSPA-R---LG---ADVVVHSISKFISGGAD 230 (418)
T ss_pred HHhCCEEEEECCCCc-cCCCHH-H---cC---CcEEEEeCccccCCCCC
Confidence 999999999999964 333221 1 13 69999999999987654
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.6e-08 Score=109.08 Aligned_cols=141 Identities=11% Similarity=-0.002 Sum_probs=100.4
Q ss_pred cEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCC--CCccc
Q psy13453 590 GGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLR 667 (764)
Q Consensus 590 ~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~--~g~md 667 (764)
..++|+|+++++..++.+.. . +.-.|+++.-++.+....++..|.+++.+|++. .+.+|
T Consensus 82 ~vi~t~G~~~al~~~~~~l~----~---------------~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d 142 (373)
T PRK07324 82 NILQTNGATGANFLVLYALV----E---------------PGDHVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPD 142 (373)
T ss_pred hEEEcCChHHHHHHHHHHhC----C---------------CCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCC
Confidence 57899999999888776431 1 112466677788888888899999999999974 34689
Q ss_pred HHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc---HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCccc
Q psy13453 668 GDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN---LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVD 744 (764)
Q Consensus 668 ~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp---l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aD 744 (764)
+++|++.+.+. +-+|+.+..++.||.+-+ +++|+++|++||+|+++|.+|..... .++......-.++ .
T Consensus 143 ~~~l~~~~~~~------~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~-~~~~~s~~~~~~~-~ 214 (373)
T PRK07324 143 LDELRRLVRPN------TKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDE-DGSTPSIADLYEK-G 214 (373)
T ss_pred HHHHHHhCCCC------CcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccc-CCCCCChhhccCC-E
Confidence 99998887543 337788899999998877 89999999999999999999976322 1111111111111 1
Q ss_pred EEEEcCCccCCCC
Q psy13453 745 SFDFNTHKWLLVN 757 (764)
Q Consensus 745 Sit~d~HK~l~~P 757 (764)
-..-++.|.++.|
T Consensus 215 I~~~s~SK~~~~~ 227 (373)
T PRK07324 215 ISTNSMSKTYSLP 227 (373)
T ss_pred EEEecchhhcCCc
Confidence 2334888988754
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.2e-08 Score=110.21 Aligned_cols=149 Identities=13% Similarity=0.091 Sum_probs=105.9
Q ss_pred CchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEe
Q psy13453 557 SPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYT 636 (764)
Q Consensus 557 sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~ 636 (764)
.|....+|+. ++++.|.. ..++++||++|+..++.+. .+ +...|++
T Consensus 60 npt~~~Le~~----iA~le~~~-----------~~~~~~sG~~Ai~~~l~al----l~---------------~GD~Vvv 105 (394)
T PRK09028 60 TPTHFAFQAA----IVELEGGA-----------GTALYPSGAAAISNALLSF----LK---------------AGDHLLM 105 (394)
T ss_pred CchHHHHHHH----HHHHhCCC-----------cEEEECCHHHHHHHHHHHH----hC---------------CCCEEEE
Confidence 5655666654 44544432 3689999999987776543 11 1124666
Q ss_pred cCCcchhHHHH----HHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHh
Q psy13453 637 SDQSNSSVEKS----AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQE 712 (764)
Q Consensus 637 S~~aH~Sv~kA----a~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~ 712 (764)
++..+...... ....|+.++.++.+ +.+.|+++|++. +-+|+++..++.+|.+.||++|+++|++
T Consensus 106 ~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~-----~~e~l~~~l~~~------TklV~lespsNPtg~v~dl~~I~~la~~ 174 (394)
T PRK09028 106 VDSCYEPTRDLCDKILKGFGIETTYYDPM-----IGEGIRELIRPN------TKVLFLESPGSITMEVQDVPTLSRIAHE 174 (394)
T ss_pred ECCCcHHHHHHHHHhhhhcceEEEEECCC-----CHHHHHHhcCcC------ceEEEEECCCCCCCcHHHHHHHHHHHHH
Confidence 66666555442 33467777776543 357788777543 4488889999999999999999999999
Q ss_pred cCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 713 YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 713 ~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
+|+|+.||.+|+.+...-|. . - .||-+..+.|||++.+
T Consensus 175 ~g~~lvvD~t~a~p~~~~Pl-~---~---GaDivv~S~tK~l~Gh 212 (394)
T PRK09028 175 HDIVVMLDNTWASPINSRPF-E---M---GVDISIQAATKYIVGH 212 (394)
T ss_pred cCCEEEEECCccccccCCcc-c---c---CceEEEEeCCeEecCC
Confidence 99999999999986543331 1 1 4699999999999988
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.4e-08 Score=109.87 Aligned_cols=157 Identities=11% Similarity=0.068 Sum_probs=116.2
Q ss_pred cCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEE
Q psy13453 555 LSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVA 634 (764)
Q Consensus 555 ~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi 634 (764)
...|-...+|+. +++|-|.. ..+++++|+.|+..++.+. +. +...|
T Consensus 59 ~~nPt~~~le~~----la~LEg~~-----------~a~~~~SGmaAi~~~~~~l----l~---------------~GD~V 104 (395)
T PRK08114 59 RGTLTHFSLQEA----MCELEGGA-----------GCALYPCGAAAVANAILAF----VE---------------QGDHV 104 (395)
T ss_pred CCChhHHHHHHH----HHHHhCCC-----------eEEEEhHHHHHHHHHHHHH----cC---------------CCCEE
Confidence 356777788874 45554432 4678888999887766533 11 12257
Q ss_pred EecCCcchhHHHHH----HhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHH
Q psy13453 635 YTSDQSNSSVEKSA----IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPIC 710 (764)
Q Consensus 635 ~~S~~aH~Sv~kAa----~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~ 710 (764)
+++...|....+.+ ...|++++.++. .|.++++++|++++ -+|.+...++.+|.+-||++|+++|
T Consensus 105 v~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~-----~d~~~l~~~l~~~T------rlV~~EtpsNp~~~v~DI~~Ia~ia 173 (395)
T PRK08114 105 LMTGTAYEPTQDFCSKILSKLGVTTTWFDP-----LIGADIAKLIQPNT------KVVFLESPGSITMEVHDVPAIVAAV 173 (395)
T ss_pred EEeCCCcHHHHHHHHHHHHhcCcEEEEECC-----CCHHHHHHhcCCCc------eEEEEECCCCCCCEeecHHHHHHHH
Confidence 78888887766554 447899888774 36788999987643 4889999999999999999999999
Q ss_pred HhcC--CEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCc--Cceee
Q psy13453 711 QEYN--IWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNF--DCSAM 763 (764)
Q Consensus 711 ~~~g--lwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~--~~g~l 763 (764)
+++| +.+.||++|+.+.+ +...++ .||-+..+.|||++.+- .+|++
T Consensus 174 ~~~g~g~~lvVDnT~a~p~~-~~pl~~------GaDivv~S~tKyl~Ghsdv~~G~v 223 (395)
T PRK08114 174 RSVNPDAVIMIDNTWAAGVL-FKALDF------GIDISIQAGTKYLVGHSDAMIGTA 223 (395)
T ss_pred HHhCCCCEEEEECCCccccc-cCHHHc------CCcEEEEcCcccccCCCcceeEEE
Confidence 9985 99999999998765 322222 36999999999999994 45543
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-07 Score=105.13 Aligned_cols=174 Identities=15% Similarity=0.106 Sum_probs=122.8
Q ss_pred ccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCc
Q psy13453 552 FSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631 (764)
Q Consensus 552 ~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~ 631 (764)
..|...+....+.+.+.+|+.+.+|++-+ .....++|+|+++++..++.+.. . ++
T Consensus 51 ~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~------~~~~i~~t~G~~~al~~~~~~l~----~---------------~g 105 (378)
T PRK07682 51 TSYTANAGLLELRQEIAKYLKKRFAVSYD------PNDEIIVTVGASQALDVAMRAII----N---------------PG 105 (378)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHhCCCCC------CCCcEEEeCChHHHHHHHHHHhC----C---------------CC
Confidence 33555566778888899999988787421 01257899999998876654321 1 12
Q ss_pred eEEEecCCcchhHHHHHHhCCCceEEEecC--CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccHHHH
Q psy13453 632 LVAYTSDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLEEL 706 (764)
Q Consensus 632 ~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d--~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~eI 706 (764)
..|++.+-++.....++...|.+++.++.+ +++.+|+++|++++.+. +-+|+.+..++.+|.+ +++++|
T Consensus 106 d~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~~~~p~NPtG~~~s~~~~~~l 179 (378)
T PRK07682 106 DEVLIVEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAITAK------TKAILLCSPNNPTGAVLNKSELEEI 179 (378)
T ss_pred CEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcCcc------cEEEEEECCCCCcCcCcCHHHHHHH
Confidence 246777888888888888899998889875 35789999999988543 3366667788999988 468999
Q ss_pred HHHHHhcCCEEEEeccccccccccchhh--hhhcCCCcccEEEEcCCccCCCC
Q psy13453 707 GPICQEYNIWLHVDAAYAGSALLLPEYA--HLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 707 a~i~~~~glwLHVDaA~Gg~~l~~~~~r--~~l~gie~aDSit~d~HK~l~~P 757 (764)
+++|++|++|+++|.+|+....- +... ..+.+...-.-+.-++.|.++.|
T Consensus 180 ~~~~~~~~~~ii~De~y~~~~~~-~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 231 (378)
T PRK07682 180 AVIVEKHDLIVLSDEIYAELTYD-EAYTSFASIKGMRERTILISGFSKGFAMT 231 (378)
T ss_pred HHHHHHcCcEEEEehhhhhcccC-CCCCChhhcccccCCEEEEecCcccccCh
Confidence 99999999999999999875431 1111 11122212245677889998754
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.8e-07 Score=104.62 Aligned_cols=179 Identities=12% Similarity=-0.033 Sum_probs=119.6
Q ss_pred cccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCce
Q psy13453 553 SWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKL 632 (764)
Q Consensus 553 ~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~ 632 (764)
.|...+...++.+.+.+++.+..|..-. ....++|+|+++++.+++.+.. . ++.
T Consensus 62 ~Y~~~~G~~~lr~~ia~~~~~~~g~~~~-------~~~i~~t~G~~~al~~~~~~l~----~---------------~gd 115 (386)
T PRK07550 62 LYGPVEGLPELREAYAAHYSRLYGAAIS-------PEQVHITSGCNQAFWAAMVTLA----G---------------AGD 115 (386)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCCC-------cceEEEecCcHHHHHHHHHHhc----C---------------CCC
Confidence 3444456788888899999888775432 1357889999998766654421 1 122
Q ss_pred EEEecCCcchhHHHHHHhCCCceEEEecCC--CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc---cHHHHH
Q psy13453 633 VAYTSDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD---NLEELG 707 (764)
Q Consensus 633 vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~--~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD---pl~eIa 707 (764)
.|++.+-++......++..|++++.|+.++ .+.+|+++|++.+++. +.+|+.+..++.+|.+- .+++|+
T Consensus 116 ~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~~~------~~~v~~~~P~NPtG~~~~~~~~~~i~ 189 (386)
T PRK07550 116 EVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITPR------TRAIALVTPNNPTGVVYPPELLHELY 189 (386)
T ss_pred EEEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhccc------CcEEEEeCCCCCCCcccCHHHHHHHH
Confidence 467777777667777788999999999974 4568999999998653 33555666788899875 488999
Q ss_pred HHHHhcCCEEEEeccccccccccchhhhhhcCCC-ccc-EEEEcCCccCCCC-cCceee
Q psy13453 708 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLE-YVD-SFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 708 ~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie-~aD-Sit~d~HK~l~~P-~~~g~l 763 (764)
++|++||+|+++|.+|+....-.......+.... ..+ -...+++|.++.| +.+|++
T Consensus 190 ~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i 248 (386)
T PRK07550 190 DLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAV 248 (386)
T ss_pred HHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccCcccceEee
Confidence 9999999999999999864211000001111110 111 2367999988744 334543
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.1e-08 Score=108.84 Aligned_cols=152 Identities=8% Similarity=-0.031 Sum_probs=111.0
Q ss_pred cCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEE
Q psy13453 555 LSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVA 634 (764)
Q Consensus 555 ~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi 634 (764)
...|....+|+ .++++.|.+ ..+++++|+.|+..++.+.. . +...|
T Consensus 67 ~~~p~~~~le~----~lA~l~g~~-----------~al~~~sG~~Ai~~~l~all----~---------------~Gd~V 112 (403)
T PRK07810 67 YGNPTVSMFEE----RLRLIEGAE-----------ACFATASGMSAVFTALGALL----G---------------AGDRL 112 (403)
T ss_pred CCCchHHHHHH----HHHHHhCCC-----------cEEEECChHHHHHHHHHHHh----C---------------CCCEE
Confidence 35566666666 567777754 36899999999887665431 1 11246
Q ss_pred EecCCcch----hHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHH
Q psy13453 635 YTSDQSNS----SVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPIC 710 (764)
Q Consensus 635 ~~S~~aH~----Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~ 710 (764)
+++...|. ...+.+...|+.++.++.+ |+++++++|++.+ -+|++...++.+|.+-|+++|+++|
T Consensus 113 l~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~ai~~~t------klV~~esp~Nptg~v~dl~~I~~la 181 (403)
T PRK07810 113 VAARSLFGSCFVVCNEILPRWGVETVFVDGE-----DLSQWEEALSVPT------QAVFFETPSNPMQSLVDIAAVSELA 181 (403)
T ss_pred EEccCCcchHHHHHHHHHHHcCcEEEEECCC-----CHHHHHHhcCcCc------eEEEEECCCCCCCeecCHHHHHHHH
Confidence 67766552 2344566689998888753 8999999987643 3788888999999999999999999
Q ss_pred HhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCc
Q psy13453 711 QEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNF 758 (764)
Q Consensus 711 ~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~ 758 (764)
+++|+++.||.||+.....-+. -. .+|-+..++||+++.+-
T Consensus 182 ~~~g~~vivD~a~a~~~~~~~~----~~---gaDivv~S~tK~l~g~g 222 (403)
T PRK07810 182 HAAGAKVVLDNVFATPLLQRGL----PL---GADVVVYSGTKHIDGQG 222 (403)
T ss_pred HHcCCEEEEECCCCccccCChh----hc---CCcEEEccCCceecCCc
Confidence 9999999999999865443221 11 36999999999998643
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2e-07 Score=105.07 Aligned_cols=172 Identities=13% Similarity=0.089 Sum_probs=121.6
Q ss_pred cccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCC-CcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCc
Q psy13453 553 SWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGP-GGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631 (764)
Q Consensus 553 ~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~-~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~ 631 (764)
.|........+-+.+.+|+++.+|++-+ . ...++|+|+++++..++.+.. . +.
T Consensus 73 ~Y~~~~G~~~LR~aia~~l~~~~g~~~~-------~~~~I~it~Ga~~al~~~~~~l~----~---------------~G 126 (405)
T PRK06207 73 AYTEYRGDADIRELLAARLAAFTGAPVD-------AADELIITPGTQGALFLAVAATV----A---------------RG 126 (405)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCCCC-------CCCCEEEeCCcHHHHHHHHHHhc----C---------------CC
Confidence 4544455677888899999999997532 1 357899999998766655321 1 12
Q ss_pred eEEEecCCcchhHHHHHHhCCCceEEEecC-----CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc---H
Q psy13453 632 LVAYTSDQSNSSVEKSAIIGDVPVRQLRSD-----DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN---L 703 (764)
Q Consensus 632 ~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d-----~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp---l 703 (764)
..|++..-++......+...|.+++.||++ +++.+|+++|++++++. +-+|+.+..++.||.+-+ +
T Consensus 127 d~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~~------~k~v~l~~P~NPTG~~~s~e~l 200 (405)
T PRK06207 127 DKVAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKAG------VRVFLFSNPNNPAGVVYSAEEI 200 (405)
T ss_pred CEEEEeCCCchhHHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhhc------CeEEEECCCCCCCCcCCCHHHH
Confidence 246667778888888899999999999986 35789999999988653 236777888999999865 7
Q ss_pred HHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCC--ccc-EEEEcCCccCCCC
Q psy13453 704 EELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLE--YVD-SFDFNTHKWLLVN 757 (764)
Q Consensus 704 ~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie--~aD-Sit~d~HK~l~~P 757 (764)
++|+++|++||+|+.+|.+|+-...-...+.. +..+. .-. -+.-++.|.++.|
T Consensus 201 ~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~-~~~~~~~~~~vi~i~SfSK~~~lp 256 (405)
T PRK06207 201 AQIAALARRYGATVIVDQLYSRLLYDGTSYTH-LRALPIDPENVITIMGPSKTESLS 256 (405)
T ss_pred HHHHHHHHHcCCEEEEeccccccccCCCCCCc-hhcCCCCcCcEEEEecchhhccCc
Confidence 77888999999999999999864321111111 11110 111 4567889988866
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.7e-07 Score=105.16 Aligned_cols=180 Identities=12% Similarity=0.103 Sum_probs=119.3
Q ss_pred cccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCce
Q psy13453 553 SWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKL 632 (764)
Q Consensus 553 ~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~ 632 (764)
.|........+.+.+.+|+.+.+|.+-+ .....++|+|++++...++.+. .. +..
T Consensus 68 ~Y~~~~G~~~lr~aia~~~~~~~~~~~~------~~~~i~vt~G~~~al~~~~~~~----~~---------------~gd 122 (394)
T PRK05942 68 GYPPFEGTASFRQAITDWYHRRYGVELD------PDSEALPLLGSKEGLTHLALAY----VN---------------PGD 122 (394)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCCCcC------CCCeEEEccChHHHHHHHHHHh----CC---------------CCC
Confidence 3443334567888889999888776432 0013667899999876665432 11 122
Q ss_pred EEEecCCcchhHHHHHHhCCCceEEEecCC--CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc---HHHHH
Q psy13453 633 VAYTSDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN---LEELG 707 (764)
Q Consensus 633 vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~--~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp---l~eIa 707 (764)
.|++++-++.....++...|++++.||+|. ++.+|+++|++.+.+. +-+|+.+..++.||.+-+ +++|.
T Consensus 123 ~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~------~k~i~l~~P~NPtG~~~s~~~~~~i~ 196 (394)
T PRK05942 123 VVLVPSPAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEVAQQ------AKILYFNYPSNPTTATAPREFFEEIV 196 (394)
T ss_pred EEEEcCCCCcchHHHHHHcCCEEEEeecCCccCCccCHHHHHHhcccc------ceEEEEcCCCCCCCCcCCHHHHHHHH
Confidence 477778888888888888999999999974 3579999999988643 336666778999999976 88899
Q ss_pred HHHHhcCCEEEEeccccccccccchhhh--hhcCCCcccEEEEcCCccCCC-CcCceee
Q psy13453 708 PICQEYNIWLHVDAAYAGSALLLPEYAH--LKRGLEYVDSFDFNTHKWLLV-NFDCSAM 763 (764)
Q Consensus 708 ~i~~~~glwLHVDaA~Gg~~l~~~~~r~--~l~gie~aDSit~d~HK~l~~-P~~~g~l 763 (764)
++|++||+|+++|.+|+-...-..+... .+.+.....-..-++-|.++. ..-+|.+
T Consensus 197 ~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i 255 (394)
T PRK05942 197 AFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFV 255 (394)
T ss_pred HHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChhhheeee
Confidence 9999999999999999854321100000 011111112234567797753 3445654
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.5e-08 Score=108.71 Aligned_cols=152 Identities=16% Similarity=0.134 Sum_probs=105.2
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
..|....+| +.++++.|.+ ..+++++|++++.+++.+. .. +...|+
T Consensus 58 ~~p~~~~Le----~~lA~l~g~~-----------~~v~~~sG~~Ai~~~l~al----l~---------------pGD~Vv 103 (405)
T PRK08776 58 GNPTRDLLG----EALAELEGGA-----------GGVITATGMGAINLVLNAL----LQ---------------PGDTLV 103 (405)
T ss_pred CChHHHHHH----HHHHHHhCCC-----------ceEEEcCHHHHHHHHHHHH----hC---------------CCCEEE
Confidence 344555555 5777777753 3588888888776555432 11 112355
Q ss_pred ecCCcchh----HHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHH
Q psy13453 636 TSDQSNSS----VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQ 711 (764)
Q Consensus 636 ~S~~aH~S----v~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~ 711 (764)
++...+.. +...+...|+.++.++. .|+++|++++++. +-+|+....++.+|.+.|+++|+++|+
T Consensus 104 v~~p~Y~~t~~~~~~~~~~~g~~v~~v~~-----~d~~~l~~~i~~~------tklV~l~~P~NPtG~v~dl~~I~~la~ 172 (405)
T PRK08776 104 VPHDAYGGSWRLFNALAKKGHFALITADL-----TDPRSLADALAQS------PKLVLIETPSNPLLRITDLRFVIEAAH 172 (405)
T ss_pred EccCCchHHHHHHHHHHHhcCcEEEEECC-----CCHHHHHHhcCcC------CeEEEEECCCCCCCccCCHHHHHHHHH
Confidence 66666654 23334556777777764 3789999888543 347777888899999999999999999
Q ss_pred hcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcC
Q psy13453 712 EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD 759 (764)
Q Consensus 712 ~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~ 759 (764)
++|+++.||.+|+......| . . -.||-+..++||+++.|-+
T Consensus 173 ~~gi~vIvD~a~a~~~~~~p----l-~--~gaDivv~S~tK~l~g~~~ 213 (405)
T PRK08776 173 KVGALTVVDNTFLSPALQKP----L-E--FGADLVLHSTTKYINGHSD 213 (405)
T ss_pred HcCCEEEEECCCcccccCCc----c-c--ccCCEEEecCceeecCCCC
Confidence 99999999999986432211 1 1 1469999999999998754
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1e-07 Score=107.40 Aligned_cols=156 Identities=17% Similarity=0.159 Sum_probs=112.0
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
..|...++|+. ++++.|.+ ..++++||+.|+..++.+.. . +...|+
T Consensus 62 ~~p~~~~Le~~----iA~~~g~~-----------~~l~~~sG~~Ai~~al~~ll----~---------------~Gd~Vl 107 (400)
T PRK06234 62 GNPTSTEVENK----LALLEGGE-----------AAVVAASGMGAISSSLWSAL----K---------------AGDHVV 107 (400)
T ss_pred CCccHHHHHHH----HHHHhCCC-----------cEEEEcCHHHHHHHHHHHHh----C---------------CCCEEE
Confidence 56777777774 45555643 35889999999877665321 1 112466
Q ss_pred ecCCcchhH----HHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHH
Q psy13453 636 TSDQSNSSV----EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQ 711 (764)
Q Consensus 636 ~S~~aH~Sv----~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~ 711 (764)
++...|.+. ...+...|++++.++.+ |+++++++|++. +-+|+....++.+|.+-|+++|+++|+
T Consensus 108 ~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~-----d~e~l~~~i~~~------tklI~iesP~NPtG~v~dl~~I~~la~ 176 (400)
T PRK06234 108 ASDTLYGCTFALLNHGLTRYGVEVTFVDTS-----NLEEVRNALKAN------TKVVYLETPANPTLKVTDIKAISNIAH 176 (400)
T ss_pred EecCccchHHHHHHHHHhhCCeEEEEECCC-----CHHHHHHHhccC------CeEEEEECCCCCCCCcCCHHHHHHHHH
Confidence 677666443 34456788888888764 799999998654 337888889999999999999999999
Q ss_pred hc--CCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcC--ceee
Q psy13453 712 EY--NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD--CSAM 763 (764)
Q Consensus 712 ~~--glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~--~g~l 763 (764)
++ |+++.||.+|+.+....+ . +. .+|-+..+++|+++.+-. .|++
T Consensus 177 ~~~~~i~livDea~~~~~~~~~----l--~~-g~Divv~S~sK~l~g~g~~~gG~v 225 (400)
T PRK06234 177 ENNKECLVFVDNTFCTPYIQRP----L--QL-GADVVVHSATKYLNGHGDVIAGFV 225 (400)
T ss_pred hcCCCCEEEEECCCCchhcCCc----h--hh-CCcEEEeeccccccCCCCceeEEE
Confidence 97 999999999987644322 1 11 469999999999987653 3543
|
|
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.4e-07 Score=105.42 Aligned_cols=216 Identities=11% Similarity=0.031 Sum_probs=139.3
Q ss_pred eeeeH----HHHHhhcCCCCCCeEEecCCC-CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc----
Q psy13453 20 LIYES----FKATHSLSGTPDQVRLSGLPD-SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS---- 90 (764)
Q Consensus 20 ~~YSv----~KAa~~LGl~~~~v~~Vpvd~-~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~---- 90 (764)
.|+|. .++++..|+.. +.+|+++ ++.+|+++|+++|+++ +.+++-+.+++++|.+.|+++|++
T Consensus 113 ~~~s~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~l~~~i~~~-----~~lv~i~~~~n~tG~~~~~~~i~~~~~~ 184 (397)
T TIGR01976 113 DHEANISPWLQAAERAGAKV---KWARVDEATGELHPDDLASLLSPR-----TRLVAVTAASNTLGSIVDLAAITELVHA 184 (397)
T ss_pred chHhHHHHHHHHHHhcCCEE---EEEeccccCCCcCHHHHHHhcCCC-----ceEEEEeCCCCCCCccCCHHHHHHHHHH
Confidence 45554 46778889877 8999985 7899999999999642 234567889999999999999876
Q ss_pred -CCCceeccccccc--------------------c----ceeeeecCCCccccc--cccccccCC--ccc-CCCCcc-cH
Q psy13453 91 -NGPLKVGGVLRRV--------------------Y----SSCLVPRGQKSLRTT--VLFHFLFQH--WQI-PLGRRF-RA 139 (764)
Q Consensus 91 -~~wlHVDa~l~~~--------------------y----~s~ll~rd~~~l~~~--~s~~~d~~d--~tl-e~SRr~-~A 139 (764)
+++++||++.... + .++++.++. .+... +...+.+.. ..+ .|++.. ..
T Consensus 185 ~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~G~l~~~~~-~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~ 263 (397)
T TIGR01976 185 AGALVVVDAVHYAPHGLIDVQATGADFLTCSAYKFFGPHMGILWGRPE-LLMNLPPYKLTFSYDTGPERFELGTPQYELL 263 (397)
T ss_pred cCCEEEEehhhhccccCCCHHHcCCCEEEEechhhcCCceEEEEEcHH-HHhhCCCccccCccCCCcchhcCCCCCHHHH
Confidence 7899999954211 0 123332221 11000 000011100 001 133332 33
Q ss_pred HHHHHHHHHccHH--------------HHHHHHHHHHHHHHHHHHHHhcCCCeEEeCC----CCceeEEEEeeccccccc
Q psy13453 140 LKLWMTLRSYGLK--------------GLQAYLRKHISLAKKFADLVEQDDRFELVCP----PSMGLVCFRLKVRFWDKL 201 (764)
Q Consensus 140 LklWatL~~lG~e--------------Gy~~~i~~~i~lA~~l~~~I~~~p~~ell~~----P~l~iV~Fry~P~~~~~~ 201 (764)
+.++++++.+-.. ++.+..++..++++++.+.|++.++++++.+ +..+++.|+..
T Consensus 264 ~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~------- 336 (397)
T TIGR01976 264 AGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVPTVSFTVH------- 336 (397)
T ss_pred HHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCceEEEEeC-------
Confidence 4667777766333 3677788889999999999999988999875 35778888642
Q ss_pred cccccCccCCccHHHHHHHHHHHhcCcEEEEece----------e-CCeeEEEEeccCCCCCHHHHHHHHHHH
Q psy13453 202 DNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGS----------F-QDRLFMRFAICSSQTEESDVQLGWNEI 263 (764)
Q Consensus 202 ~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~----------l-~g~~~LRi~v~np~Tt~e~i~~~l~~l 263 (764)
+.+ ...+.++|.+.|....+... + .....+|+++.. .+++++++.+++.|
T Consensus 337 ---------~~~--~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~t~~di~~l~~~l 397 (397)
T TIGR01976 337 ---------GLP--PQRVVRRLADQGIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLAH-YNTAEEVDRLLEAL 397 (397)
T ss_pred ---------CcC--HHHHHHHHHHCCeEEEeCccchHHHHHHhCCCCCCCeEEEEeec-cCCHHHHHHHHHhC
Confidence 111 24688888888876543311 1 123579997554 67899999998753
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.8e-07 Score=106.34 Aligned_cols=142 Identities=9% Similarity=0.089 Sum_probs=105.3
Q ss_pred ccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceE
Q psy13453 554 WLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633 (764)
Q Consensus 554 ~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~v 633 (764)
|.......++.+.+.+++.+-.|++-+ ....++|+|+|+++.+++.+.. . +...
T Consensus 90 Y~~~~G~~~lr~aia~~~~~~~~~~~~-------~~~v~it~G~~~al~l~~~~l~----~---------------~Gd~ 143 (430)
T PLN00145 90 YSTCVGLLPARRAIAEYLSRDLPYELS-------TDDIYLTAGCAQAIEIIMSVLA----Q---------------PGAN 143 (430)
T ss_pred CCCCccCHHHHHHHHHHHhhccCCCCC-------hhhEEEeCCHHHHHHHHHHHhc----C---------------CCCE
Confidence 444445566777777777766555321 2468999999999877665421 1 1124
Q ss_pred EEecCCcchhHHHHHHhCCCceEEEecC--CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc---HHHHHH
Q psy13453 634 AYTSDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN---LEELGP 708 (764)
Q Consensus 634 i~~S~~aH~Sv~kAa~~lGl~v~~Vp~d--~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp---l~eIa~ 708 (764)
|++++-++......+...|++++.+++. +++.+|+++|++.+.+. +.+++.+..++.+|.+-+ +++|++
T Consensus 144 Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~i~i~~P~NPtG~v~~~~~l~~i~~ 217 (430)
T PLN00145 144 ILLPRPGYPLYEARAVFSGLEVRHFDLLPERGWEVDLEGVEALADEN------TVAMVIINPNNPCGSVYSYEHLAKIAE 217 (430)
T ss_pred EEEcCCCCccHHHHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhCcC------ceEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence 6667777777777888899999988864 46789999999887653 347777888999999977 888888
Q ss_pred HHHhcCCEEEEeccccccc
Q psy13453 709 ICQEYNIWLHVDAAYAGSA 727 (764)
Q Consensus 709 i~~~~glwLHVDaA~Gg~~ 727 (764)
+|++||+|+++|.+|+...
T Consensus 218 ~a~~~~i~ii~De~Y~~~~ 236 (430)
T PLN00145 218 TARKLGILVIADEVYDHLT 236 (430)
T ss_pred HHHHcCCEEEEeccchhhc
Confidence 9999999999999998643
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.4e-07 Score=103.96 Aligned_cols=181 Identities=21% Similarity=0.234 Sum_probs=128.6
Q ss_pred CccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCc-EEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCcccccc
Q psy13453 551 GFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGG-GIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIR 629 (764)
Q Consensus 551 ~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~-GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~ 629 (764)
...|........+++.+.+|+.+--|++.+ .. .+++++|+.+++..+..+.. ..
T Consensus 37 ~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~--------~~~~i~~~~G~~~~~~~~~~~~~---~~-------------- 91 (363)
T PF00155_consen 37 FLGYPPPQGYPELREAIADFLGRRYGVPVD--------PEANILVTSGAQAALFLLLRLLK---IN-------------- 91 (363)
T ss_dssp CTSSTCTTHHHHHHHHHHHHHHHHHTHHTT--------GGEGEEEESHHHHHHHHHHHHHH---SS--------------
T ss_pred cccCCCchhhHHHHHHHHHHhhhccCcccc--------cceEEEEecccccchhhhhhccc---cc--------------
Confidence 445566666788999888888866665443 23 45555666665555443321 00
Q ss_pred CceEEEecCCcchhHHHHHHhCCCceEEEecC--CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccHH
Q psy13453 630 NKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLE 704 (764)
Q Consensus 630 ~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d--~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~ 704 (764)
++..|++.+-+|.....+++..|+.++.+|.+ +++.+|+++|++.+++...++..+.+|+.+..++.||.+ +.+.
T Consensus 92 ~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~ 171 (363)
T PF00155_consen 92 PGDTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELR 171 (363)
T ss_dssp TTSEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHH
T ss_pred ccccceecCCccccccccccccCceeeeccccccccccccccccccccccccccccccceeeeccccccccccccccccc
Confidence 12358888999999999999999999999965 788999999999999876665445677778888899987 4555
Q ss_pred HHHHHHHhcCCEEEEeccccccccccchh---hhhhcCCCcccEEEEcCCccCCCC
Q psy13453 705 ELGPICQEYNIWLHVDAAYAGSALLLPEY---AHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 705 eIa~i~~~~glwLHVDaA~Gg~~l~~~~~---r~~l~gie~aDSit~d~HK~l~~P 757 (764)
+|+++|++||+|+.+|-+|+....-.+.. ...+..-.. --+.-++.|.++.|
T Consensus 172 ~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~-vi~~~S~SK~~g~~ 226 (363)
T PF00155_consen 172 ELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDN-VIVVGSLSKSFGLP 226 (363)
T ss_dssp HHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTST-EEEEEESTTTTTSG
T ss_pred chhhhhcccccceeeeeceeccccCCCccCccccccccccc-ceeeeecccccccc
Confidence 66666999999999999999876553322 122222111 36888999988766
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.1e-07 Score=106.39 Aligned_cols=151 Identities=12% Similarity=0.103 Sum_probs=104.6
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
..|....+|+ .++++.|.+. .+++++|+.++..++. ... +.-.|+
T Consensus 48 ~~p~~~~Le~----~lA~l~g~~~-----------~~~~~sG~aai~~~~~-----~l~---------------~Gd~Vi 92 (377)
T PRK07671 48 GNPTRAALEE----LIAVLEGGHA-----------GFAFGSGMAAITAVMM-----LFS---------------SGDHVI 92 (377)
T ss_pred CChHHHHHHH----HHHHHhCCCc-----------eEEeCCHHHHHHHHHH-----HhC---------------CCCEEE
Confidence 3455555554 6788887643 4777878765543321 111 112466
Q ss_pred ecCCcchhHHH----HHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHH
Q psy13453 636 TSDQSNSSVEK----SAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQ 711 (764)
Q Consensus 636 ~S~~aH~Sv~k----Aa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~ 711 (764)
++...|.+..+ .+...|+.++.++. .|+++++++|+++. -+|++...++.+|.+.|+++|+++|+
T Consensus 93 v~~~~y~~~~~~~~~~~~~~G~~v~~v~~-----~d~~~l~~ai~~~t------klV~le~P~NPtg~~~dl~~I~~la~ 161 (377)
T PRK07671 93 LTDDVYGGTYRVMTKVLNRFGIEHTFVDT-----SNLEEVEEAIRPNT------KAIYVETPTNPLLKITDIKKISTIAK 161 (377)
T ss_pred ECCCccchHHHHHHHHHhcCCeEEEEECC-----CCHHHHHHhcCCCC------eEEEEECCCCCCCcccCHHHHHHHHH
Confidence 77776654333 34457888888764 37999999986543 37788888899999999999999999
Q ss_pred hcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcC
Q psy13453 712 EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD 759 (764)
Q Consensus 712 ~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~ 759 (764)
++|++++||.+|+......+ .- ..+|.++.+++||++.|-+
T Consensus 162 ~~g~~lvvD~a~~~~~~~~p----~~---~g~Divv~S~sK~l~G~~~ 202 (377)
T PRK07671 162 EKGLLTIVDNTFMTPYWQSP----IS---LGADIVLHSATKYLGGHSD 202 (377)
T ss_pred HcCCEEEEECCCCccccCCh----hh---hCCeEEEecCcccccCCcc
Confidence 99999999999986433221 11 1469999999999998753
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.3e-07 Score=102.66 Aligned_cols=172 Identities=15% Similarity=0.066 Sum_probs=129.2
Q ss_pred cCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEE
Q psy13453 555 LSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVA 634 (764)
Q Consensus 555 ~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi 634 (764)
..+|.+..+-+++++.|..+|+-... ..-+++++||.+.-.++. ...+ |...+
T Consensus 31 h~s~~F~~~~~~~~~~L~~v~~t~~~--------~~~ll~gsGt~amEAav~----sl~~---------------pgdkV 83 (383)
T COG0075 31 HRSPDFVGIMKEVLEKLRKVFGTENG--------DVVLLSGSGTLAMEAAVA----SLVE---------------PGDKV 83 (383)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCC--------cEEEEcCCcHHHHHHHHH----hccC---------------CCCeE
Confidence 57899999999999999999997642 134677888876544433 2221 11223
Q ss_pred EecCCcchh--HHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHh
Q psy13453 635 YTSDQSNSS--VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQE 712 (764)
Q Consensus 635 ~~S~~aH~S--v~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~ 712 (764)
++....-|. +.+-+...|.+++.+.+...-.+|+++++++|+++.. .-.|..+..-|.||...|+++|+++|++
T Consensus 84 Lv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~----~~~V~~vH~ETSTGvlnpl~~I~~~~k~ 159 (383)
T COG0075 84 LVVVNGKFGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDPD----IKAVAVVHNETSTGVLNPLKEIAKAAKE 159 (383)
T ss_pred EEEeCChHHHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCC----ccEEEEEeccCcccccCcHHHHHHHHHH
Confidence 334444443 6677888999999999886667999999999985532 3389999999999999999999999999
Q ss_pred cCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 713 YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 713 ~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
||..+.|||.-+.+.. +.+..--|+ |-+....+|.+++|.|.|++
T Consensus 160 ~g~l~iVDaVsS~Gg~---~~~vd~wgi---Dv~itgSQK~l~~PPGla~v 204 (383)
T COG0075 160 HGALLIVDAVSSLGGE---PLKVDEWGI---DVAITGSQKALGAPPGLAFV 204 (383)
T ss_pred cCCEEEEEecccCCCc---ccchhhcCc---cEEEecCchhccCCCcccee
Confidence 9999999996432222 222222355 99999999999999999876
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.4e-07 Score=103.81 Aligned_cols=187 Identities=14% Similarity=0.085 Sum_probs=126.5
Q ss_pred HHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhcc
Q psy13453 539 VGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQS 618 (764)
Q Consensus 539 lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~ 618 (764)
+.+.+...+..+...|...+....+++.+.+|+.+..|.+-+ .....++|+|+++|+..++.+. ..
T Consensus 46 ~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~------~~~~I~~t~G~~~al~~~~~~l----~~---- 111 (387)
T PRK07683 46 VKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDKYDLHYS------PESEIIVTIGASEAIDIAFRTI----LE---- 111 (387)
T ss_pred HHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCC------CCCcEEEeCChHHHHHHHHHHh----CC----
Confidence 344455445444445555566778888899999877776432 1125799999999987665432 11
Q ss_pred CCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCC-CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCc
Q psy13453 619 KNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGT 697 (764)
Q Consensus 619 ~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~-~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~ 697 (764)
++..|+++.-+......++...|.+++.+|.++ ++.+|+++|++.+.+. +-+|+.+..++.+
T Consensus 112 -----------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~i~i~~p~NPt 174 (387)
T PRK07683 112 -----------PGTEVILPAPIYPGYEPIIRLCGAKPVFIDTRSTGFRLTAEALENAITEK------TRCVVLPYPSNPT 174 (387)
T ss_pred -----------CCCEEEEcCCCccchHHHHHHcCCEEEEeecCcccCCCCHHHHHHhcCcC------ceEEEEeCCCCCC
Confidence 112466666666667778888999999999875 4568999999887543 3366777888999
Q ss_pred ccc---ccHHHHHHHHHhcCCEEEEeccccccccccchhhhh--hcCCCcccEEEEcCCccCCCC
Q psy13453 698 CAF---DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHL--KRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 698 Gai---Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~--l~gie~aDSit~d~HK~l~~P 757 (764)
|.+ +++++|+++|+++|+++++|.+|.....- ++.... +.+...-.-+.-++-|.++.|
T Consensus 175 G~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~-~~~~~~~~~~~~~~~vi~~~s~SK~~~~p 238 (387)
T PRK07683 175 GVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYE-QPHTSIAHFPEMREKTIVINGLSKSHSMT 238 (387)
T ss_pred CcCCCHHHHHHHHHHHHHcCeEEEEecccccceeC-CCcCChhhccCCcCCeEEEeeccccccCc
Confidence 997 56899999999999999999999865321 111111 111111134467889998866
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-07 Score=108.00 Aligned_cols=151 Identities=13% Similarity=0.019 Sum_probs=103.8
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
..|....+|+ .++++.|.+ ..+++++|++|+..++.+... + ...|+
T Consensus 56 ~~pt~~~Le~----~lA~l~g~~-----------~~l~~ssG~~Ai~~al~al~~---~----------------Gd~Vl 101 (425)
T PRK06084 56 MNPTNDVLEQ----RVAALEGGV-----------GALAVASGMAAITYAIQTIAE---A----------------GDNIV 101 (425)
T ss_pred CCchHHHHHH----HHHHHhCCC-----------ceeEehhHHHHHHHHHHHHhC---C----------------CCEEE
Confidence 3455555554 667777643 357899999988777764321 0 11345
Q ss_pred ecCCcchhHHHHH----HhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHH
Q psy13453 636 TSDQSNSSVEKSA----IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQ 711 (764)
Q Consensus 636 ~S~~aH~Sv~kAa----~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~ 711 (764)
++...+......+ ...|+.+..++. .|+++|+++|+++. -+|+....++.+|.+-|+++|+++|+
T Consensus 102 ~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~-----~d~e~le~ai~~~t------klV~lesp~NPtG~v~dl~~I~~la~ 170 (425)
T PRK06084 102 SVAKLYGGTYNLLAHTLPRIGIETRFAAH-----DDIAALEALIDERT------KAVFCESIGNPAGNIIDIQALADAAH 170 (425)
T ss_pred EeCCCcchHHHHHHHhcccceeEEEEECC-----CCHHHHHHHhccCC------cEEEEeCCCCCCCeecCHHHHHHHHH
Confidence 5555444333332 224666655543 48999999987643 37777888999999999999999999
Q ss_pred hcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCc
Q psy13453 712 EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNF 758 (764)
Q Consensus 712 ~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~ 758 (764)
+||+++.||.+|+.+....| .-. .+|-+..++|||++.+-
T Consensus 171 ~~~i~vVvD~a~a~~~~~~p----~~~---gaDivv~S~tK~l~G~g 210 (425)
T PRK06084 171 RHGVPLIVDNTVATPVLCRP----FEH---GADIVVHSLTKYIGGHG 210 (425)
T ss_pred HcCCEEEEECCCcccccCCh----hhc---CCCEEEECchhcccccc
Confidence 99999999999987654322 111 37999999999998663
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.3e-07 Score=103.25 Aligned_cols=159 Identities=11% Similarity=0.041 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcch
Q psy13453 563 LEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNS 642 (764)
Q Consensus 563 lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~ 642 (764)
...++-+.+++++|.+. .+|+++|++||..++.+..... ++.+|+++...|.
T Consensus 91 ~~~~le~~la~~~g~~~-----------~~~~~SG~~An~~ai~~l~~~~-----------------~g~~I~~~~~~H~ 142 (406)
T PRK13393 91 YHVLLEAELADLHGKEA-----------ALLFTSGYVSNWAALSTLGSRL-----------------PGCVILSDELNHA 142 (406)
T ss_pred HHHHHHHHHHHHhCCCc-----------EEEeCCcHHHHHHHHHHhhcCC-----------------CCCEEEEccchhH
Confidence 44555578888887643 4666677889998887421110 1226788889999
Q ss_pred hHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEecc
Q psy13453 643 SVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAA 722 (764)
Q Consensus 643 Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA 722 (764)
|+..+++..|..++.++. .|+++|++.++... ...+.+|+....++.+|.+-|+++|.++|++||++++||.|
T Consensus 143 s~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~--~~~~~~v~~~~v~~~~G~~~~l~~i~~l~~~~~~~livDea 215 (406)
T PRK13393 143 SMIEGIRHSRAEKRIFRH-----NDPADLERKLSDLD--PHRPKLVAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEV 215 (406)
T ss_pred HHHHHHHHcCCeEEEeCC-----CCHHHHHHHHHhcc--CCCCEEEEEcCCCCCCCchhCHHHHHHHHHHcCCEEEEECC
Confidence 999999888887777664 36888888886431 12355777777888899999999999999999999999999
Q ss_pred ccccccccchhhh--hhcCC-CcccEEEEcCCccCCCC
Q psy13453 723 YAGSALLLPEYAH--LKRGL-EYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 723 ~Gg~~l~~~~~r~--~l~gi-e~aDSit~d~HK~l~~P 757 (764)
|+.+.+ .+.... ...++ +..|-+.-++-|.++.+
T Consensus 216 ~~~g~~-g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~~ 252 (406)
T PRK13393 216 HAVGLY-GPRGGGIAEREGLADRLTIIEGTLAKAFGVM 252 (406)
T ss_pred cccccc-CCCCCchhhhcCCCCCCeEEEEeCchhhccc
Confidence 984432 121111 11222 23466666889988754
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.6e-07 Score=101.12 Aligned_cols=172 Identities=15% Similarity=0.121 Sum_probs=115.1
Q ss_pred ccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceE
Q psy13453 554 WLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633 (764)
Q Consensus 554 ~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~v 633 (764)
|........+-+.+.+|+.+..|.+.. .....++|+|++++....+.+. .. +...
T Consensus 63 Y~~~~G~~~lr~~ia~~~~~~~~~~~~------~~~~vi~t~G~~~~l~~~~~~~----~~---------------~gd~ 117 (383)
T TIGR03540 63 YPSYEGMLAYRQAVADWYKRRFGVELD------PETEVLSLIGSKEGIAHIPLAF----VN---------------PGDI 117 (383)
T ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCC------CCCeEEECCCcHHHHHHHHHHh----CC---------------CCCE
Confidence 333334466778888888888777432 0123567899999876655432 11 1225
Q ss_pred EEecCCcchhHHHHHHhCCCceEEEecCC--CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc---HHHHHH
Q psy13453 634 AYTSDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN---LEELGP 708 (764)
Q Consensus 634 i~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~--~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp---l~eIa~ 708 (764)
|++..-++.....++..+|.+++.+|+++ .+.+|+++|++++.+. +-+|+.+..++.+|.+-+ +++|++
T Consensus 118 vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~~~------~~~v~i~~P~NPtG~~~~~~~~~~i~~ 191 (383)
T TIGR03540 118 VLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAKK------AKLMFINYPNNPTGAVAPLKFFKELVE 191 (383)
T ss_pred EEEeCCCCcchHHHHHhcCCEEEEEecCcccCCccCHHHHHhhcccc------ceEEEEeCCCCCcCccCCHHHHHHHHH
Confidence 77777777777888889999999999974 3568999999988543 336666778899999866 788899
Q ss_pred HHHhcCCEEEEecccccccccc---chhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 709 ICQEYNIWLHVDAAYAGSALLL---PEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 709 i~~~~glwLHVDaA~Gg~~l~~---~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
+|++||+|+++|.+|+-...-. +.... +.+...-.-..-++-|.++.|
T Consensus 192 ~a~~~~~~ii~De~y~~l~~~~~~~~~~~~-~~~~~~~~i~~~SfSK~~g~~ 242 (383)
T TIGR03540 192 FAKEYNIIVCHDNAYSEITFDGYKAPSFLE-VDGAKDVGIEFHSLSKTYNMT 242 (383)
T ss_pred HHHHcCEEEEEecchhhhccCCCCCcCccc-CCCcccCEEEEEecccccCCc
Confidence 9999999999999998543211 11111 111111123456777988644
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.5e-08 Score=108.38 Aligned_cols=169 Identities=12% Similarity=-0.073 Sum_probs=117.3
Q ss_pred cccCccccC---CchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCC-hHHHHHHHHHHHHHHHhhhhccCCCCC
Q psy13453 548 GLIGFSWLS---SPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQST-ASEATLVSILVAKRKMINHWQSKNPSL 623 (764)
Q Consensus 548 N~n~~~~~~---sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsG-gTeANl~Al~aAR~~~~~~~~~~~~~~ 623 (764)
|.....+.. ++.+.++-+++.+.++++||.+.+ ...+|++| ||+|+-.++... ...
T Consensus 20 ~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~--------~~v~~~~gsgT~a~ea~~~nl----~~~-------- 79 (349)
T TIGR01364 20 GTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDN--------YEVLFLQGGATGQFAAVPLNL----LAE-------- 79 (349)
T ss_pred CCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCC--------ceEEEEcCCchHHHHHHHHhc----CCC--------
Confidence 344445543 455568999999999999998653 34677766 998865554421 111
Q ss_pred ccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCCCC----cccHHHHHHHHHHhhhcCCCceEEEEeeccCCccc
Q psy13453 624 TENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNG----VLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCA 699 (764)
Q Consensus 624 ~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g----~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Ga 699 (764)
..+-+++.++..+|-.. +-|+..|+ +..+.+++.+ .+++++++. ++ .+-+|..|...|.+|.
T Consensus 80 ----~~~~l~i~~G~fg~r~~-~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~v~~th~ETstGv 145 (349)
T TIGR01364 80 ----GKVADYIVTGAWSKKAA-KEAKKYGV-VNVVASGKEGNYTKIPDPSTWEI--SE------DAAYVHYCANETIHGV 145 (349)
T ss_pred ----CCeEEEEECCHHHHHHH-HHHHHhCC-cEEEeccccCCCCCCCCHHhcCC--CC------CCCEEEEcCCCCcccE
Confidence 01235677777777774 45566777 7777766433 345554441 11 3558999999999999
Q ss_pred cccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 700 FDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 700 iDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
..| ++++.+++.+.|||+++.+....+- +.+ |.+.++.||+++ |.|.|++|
T Consensus 146 ~~~-----~l~~~~~~l~iVDavss~g~~~id~-----~~~---d~~~~ssqK~lg-P~Glg~l~ 196 (349)
T TIGR01364 146 EFR-----ELPDVKNAPLVADMSSNILSRPIDV-----SKF---GLIYAGAQKNIG-PAGLTVVI 196 (349)
T ss_pred ecc-----eecccCCCeEEEEccccccCccCCH-----HHc---cEEEEecccccC-CCceEEEE
Confidence 875 6777789999999999887766642 223 799999999987 99999875
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.6e-07 Score=102.67 Aligned_cols=188 Identities=10% Similarity=0.043 Sum_probs=123.7
Q ss_pred HHHHHHHHHhhccc-CccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCC-CcEEEeCChHHHHHHHHHHHHHHHhh
Q psy13453 537 SIVGDMLSGAFGLI-GFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGP-GGGIIQSTASEATLVSILVAKRKMIN 614 (764)
Q Consensus 537 ~~lad~l~~~lN~n-~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~-~~GvfTsGgTeANl~Al~aAR~~~~~ 614 (764)
..+.+.+...++.. ...|. .+....+-+.+.+|+.+..|++-+ . ...++|+|++++...++.+. ..
T Consensus 48 ~~~~~~~~~~~~~~~~~~y~-~~G~~~lr~aia~~~~~~~g~~~~-------~~~~I~it~G~~~al~~~~~~~----~~ 115 (399)
T PRK07681 48 DFVREEMVHTANQKESYGYT-LSGIQEFHEAVTEYYNNTHNVILN-------ADKEVLLLMGSQDGLVHLPMVY----AN 115 (399)
T ss_pred HHHHHHHHHHHhccccCCCC-CCCcHHHHHHHHHHHHHHhCCCCC-------CCCeEEECCCcHHHHHHHHHHh----CC
Confidence 34555555555432 12222 245566777888888887776432 1 35788999999876655432 11
Q ss_pred hhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCCC--CcccHHHHHHHHHHhhhcCCCceEEEEee
Q psy13453 615 HWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDN--GVLRGDALLTAVKEDLAKGLIPCCLIATL 692 (764)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~--g~md~~~Le~~I~~~~~~G~~p~~Vvata 692 (764)
++..|++.+-++......+...|++++.||++++ +.+|+++|++++.+. +-+|+.+.
T Consensus 116 ---------------~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~------~k~v~l~~ 174 (399)
T PRK07681 116 ---------------PGDIILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEIADK------AKMMILNF 174 (399)
T ss_pred ---------------CCCEEEECCCCccchHHHHHhcCCEEEEEecCCCCCCcCCHHHHHHhcccc------ceEEEEeC
Confidence 1224677778888888889999999999999754 468999999888543 33777777
Q ss_pred ccCCcccccc---HHHHHHHHHhcCCEEEEeccccccccccchhhhhh--cCCCcccEEEEcCCccCCCC
Q psy13453 693 GTTGTCAFDN---LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLK--RGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 693 GTT~~GaiDp---l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l--~gie~aDSit~d~HK~l~~P 757 (764)
.++.||.+-+ +++|+++|++||+|+.+|.+|+....-........ .+...-.-+.-++.|.++.|
T Consensus 175 P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 244 (399)
T PRK07681 175 PGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLA 244 (399)
T ss_pred CCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCc
Confidence 8999999966 78888999999999999999986532111111111 11101123344889988744
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.6e-07 Score=105.23 Aligned_cols=151 Identities=14% Similarity=0.128 Sum_probs=105.7
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
..|....+|+ .++++.|.+. .+++++|+.|+..++ .+ +. +...|+
T Consensus 48 ~~p~~~~Le~----~la~l~g~~~-----------al~~~SG~~Al~~~l-~~----l~---------------pGd~Vi 92 (380)
T PRK06176 48 GNPTRFALEE----LIADLEGGVK-----------GFAFASGLAGIHAVF-SL----FQ---------------SGDHVL 92 (380)
T ss_pred CChhHHHHHH----HHHHHhCCCC-----------EEEECCHHHHHHHHH-HH----cC---------------CCCEEE
Confidence 4566666665 6777777543 477788887764332 21 11 112466
Q ss_pred ecCCcchhH----HHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHH
Q psy13453 636 TSDQSNSSV----EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQ 711 (764)
Q Consensus 636 ~S~~aH~Sv----~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~ 711 (764)
++...+.+. ...+...|+.++.++.+ |+++++++++++ +-+|++...++.+|.+-|+++|+++|+
T Consensus 93 ~~~~~y~~t~~~~~~~~~~~gi~v~~vd~~-----d~e~l~~ai~~~------t~lV~lesP~Nptg~~~di~~I~~la~ 161 (380)
T PRK06176 93 LGDDVYGGTFRLFDKVLVKNGLSCTIIDTS-----DLSQIKKAIKPN------TKALYLETPSNPLLKITDLAQCASVAK 161 (380)
T ss_pred EcCCChhHHHHHHHHHHHhcCeEEEEcCCC-----CHHHHHHhcCcC------ceEEEEECCCCCCceecCHHHHHHHHH
Confidence 666655443 33455678888877653 799999888654 347777888999999999999999999
Q ss_pred hcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcC
Q psy13453 712 EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD 759 (764)
Q Consensus 712 ~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~ 759 (764)
++|++++||.+|+......| . +. .+|-++.++|||++.|-+
T Consensus 162 ~~gi~vivD~t~a~~~~~~p----~--~~-gaDivv~S~tK~l~g~~d 202 (380)
T PRK06176 162 DHGLLTIVDNTFATPYYQNP----L--LL-GADIVVHSGTKYLGGHSD 202 (380)
T ss_pred HcCCEEEEECCccccccCCc----c--cc-CCCEEEecCceeccCCcc
Confidence 99999999999986433222 1 12 569999999999998754
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.3e-07 Score=102.98 Aligned_cols=171 Identities=9% Similarity=-0.049 Sum_probs=112.8
Q ss_pred ccccCCcceeeeeHHHHHhhc---CCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchh
Q psy13453 11 AYPSETLSLLIYESFKATHSL---SGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNA 87 (764)
Q Consensus 11 ~~~~~~~~~~~YSv~KAa~~L---Gl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ 87 (764)
+..++. .|+|+.++...+ |+. ++.||+++++++|+++|+++|+++ +-+++-+..++++|.+.|+++
T Consensus 91 vl~~~~---~h~s~~~~~~~~~~~g~~---v~~v~~~~~~~~d~~~l~~~i~~~-----t~lv~v~~~~n~tG~~~~l~~ 159 (364)
T PLN02651 91 VITTQT---EHKCVLDSCRHLQQEGFE---VTYLPVKSDGLVDLDELAAAIRPD-----TALVSVMAVNNEIGVIQPVEE 159 (364)
T ss_pred EEEccc---ccHHHHHHHHHHHhcCCE---EEEEccCCCCcCCHHHHHHhcCCC-----cEEEEEECCCCCceecccHHH
Confidence 444555 577766665543 554 489999989999999999999753 224457788889999999999
Q ss_pred hhc-----CCCceecccc--------------------cccc-----ceeeeecCCCc--cccccccccccCCcccCCCC
Q psy13453 88 PVS-----NGPLKVGGVL--------------------RRVY-----SSCLVPRGQKS--LRTTVLFHFLFQHWQIPLGR 135 (764)
Q Consensus 88 ia~-----~~wlHVDa~l--------------------~~~y-----~s~ll~rd~~~--l~~~~s~~~d~~d~tle~SR 135 (764)
|++ ++|+|||++. .|++ +++++++++.. +...+. .....+.--.|+.
T Consensus 160 I~~~~~~~g~~~~vD~a~~~g~~~~~~~~~~~D~~~~s~hK~~gp~G~g~l~v~~~~~~~l~p~~~-g~~~~~~~~~GT~ 238 (364)
T PLN02651 160 IGELCREKKVLFHTDAAQAVGKIPVDVDDLGVDLMSISGHKIYGPKGVGALYVRRRPRVRLEPLMS-GGGQERGRRSGTE 238 (364)
T ss_pred HHHHHHHcCCEEEEEcchhhCCcccCcccCCCCEEEechhhhCCCCceEEEEEcCCCCCCCCcccc-CCCccCCccCCCc
Confidence 887 8899999942 1222 14566665321 111100 0000000113344
Q ss_pred cc-cHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEeCC--CC---ceeEEEEee
Q psy13453 136 RF-RALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQ-DDRFELVCP--PS---MGLVCFRLK 194 (764)
Q Consensus 136 r~-~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~-~p~~ell~~--P~---l~iV~Fry~ 194 (764)
.. ..+.+-+++.++-. +..++.++..++++++.+.+++ .++++++++ |+ -++++|.+.
T Consensus 239 ~~~~~~~l~~al~~~~~-~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~ 303 (364)
T PLN02651 239 NTPLVVGLGAACELAMK-EMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFA 303 (364)
T ss_pred cHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEeC
Confidence 22 23466777777754 5588889999999999999986 789999985 33 348999763
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.8e-07 Score=102.62 Aligned_cols=189 Identities=16% Similarity=0.098 Sum_probs=133.5
Q ss_pred HHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhh
Q psy13453 536 PSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINH 615 (764)
Q Consensus 536 ~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~ 615 (764)
+..+-+.+...++.....|..+....++-+.+.+++.+..|++-. .....++|.|++++++.++.+-.+.
T Consensus 43 p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~------~~~eiivt~Ga~~al~~~~~a~~~p---- 112 (393)
T COG0436 43 PEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVD------PEEEIIVTAGAKEALFLAFLALLNP---- 112 (393)
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCC------CCCeEEEeCCHHHHHHHHHHHhcCC----
Confidence 344444444444433224556677788899999999999885432 1134899999999998887754221
Q ss_pred hccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecC---CCCcccHHHHHHHHHHhhhcCCCceEEEEee
Q psy13453 616 WQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSD---DNGVLRGDALLTAVKEDLAKGLIPCCLIATL 692 (764)
Q Consensus 616 ~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d---~~g~md~~~Le~~I~~~~~~G~~p~~Vvata 692 (764)
.-.|++.+=.-.+......+.|..+..||++ .++.+|+++|+++|.+.++ +|+.+.
T Consensus 113 ---------------GDeVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk------~i~ln~ 171 (393)
T COG0436 113 ---------------GDEVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITPKTK------AIILNS 171 (393)
T ss_pred ---------------CCEEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCccce------EEEEeC
Confidence 1235566666667777788999999999975 3799999999999988554 999999
Q ss_pred ccCCcccc---ccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCc--ccEEEE-cCCccCCC
Q psy13453 693 GTTGTCAF---DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY--VDSFDF-NTHKWLLV 756 (764)
Q Consensus 693 GTT~~Gai---Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~--aDSit~-d~HK~l~~ 756 (764)
.+|.||++ +.+++|+++|++|++|+..|-+|.....--.++...+ .++. -..|++ ++.|.++.
T Consensus 172 P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~-~~~~~~~~~i~i~s~SK~~~m 240 (393)
T COG0436 172 PNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSIL-ELAGARDRTITINSFSKTYGM 240 (393)
T ss_pred CCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHh-hcCCCcceEEEEecccccccc
Confidence 99999999 5788899999999999999999988543221111111 1111 125666 67787664
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.1e-07 Score=105.30 Aligned_cols=178 Identities=17% Similarity=0.146 Sum_probs=121.4
Q ss_pred chHHHHHHHHHHHHHHHcC----CCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceE
Q psy13453 558 PACTELEVLVMNWLGKALG----LPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633 (764)
Q Consensus 558 p~~t~lE~~v~~~la~llG----~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~v 633 (764)
.....+-+.+.+|+.+..| +++ ...++|+|+++++.+.+.+..+ +...
T Consensus 94 ~G~~~LR~aiA~~l~~~~g~~v~v~p---------e~Ivit~Ga~~al~~l~~~l~~-------------------pGD~ 145 (496)
T PLN02376 94 HGLKKFRQAIAHFMGKARGGKVTFDP---------ERVVMSGGATGANETIMFCLAD-------------------PGDV 145 (496)
T ss_pred CCcHHHHHHHHHHHHHHhCCCCcCCh---------hhEEEccchHHHHHHHHHHhCC-------------------CCCE
Confidence 3445566777778887766 333 3678999999988766553211 1224
Q ss_pred EEecCCcchhHHHHHH-hCCCceEEEecC--CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc---HHHHH
Q psy13453 634 AYTSDQSNSSVEKSAI-IGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN---LEELG 707 (764)
Q Consensus 634 i~~S~~aH~Sv~kAa~-~lGl~v~~Vp~d--~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp---l~eIa 707 (764)
|++..-.+......+. ..|++++.||++ +++.+|+++|++++++..+.+..+-+|+.+..++.+|.+-+ +++|.
T Consensus 146 Vlv~~P~Y~~~~~~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~ 225 (496)
T PLN02376 146 FLIPSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLV 225 (496)
T ss_pred EEECCCCccchHHHHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHH
Confidence 6777777777777777 489999999995 46789999999988665444555666777889999999955 66678
Q ss_pred HHHHhcCCEEEEeccccccccccchhhh---hhcCCC----cccE--EEEcCCccCCCC-cCceee
Q psy13453 708 PICQEYNIWLHVDAAYAGSALLLPEYAH---LKRGLE----YVDS--FDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 708 ~i~~~~glwLHVDaA~Gg~~l~~~~~r~---~l~gie----~aDS--it~d~HK~l~~P-~~~g~l 763 (764)
++|++||+|+.+|-+|+....-.+.+.. ...... .-|- +..++.|.++.| +-+|.+
T Consensus 226 ~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~l 291 (496)
T PLN02376 226 RFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIV 291 (496)
T ss_pred HHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEE
Confidence 8899999999999999975432222211 111110 0122 357999999755 555554
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=98.71 E-value=8e-07 Score=100.18 Aligned_cols=220 Identities=13% Similarity=0.051 Sum_probs=142.7
Q ss_pred eeHHHHHhhcCCCCC-CeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCce
Q psy13453 22 YESFKATHSLSGTPD-QVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLK 95 (764)
Q Consensus 22 YSv~KAa~~LGl~~~-~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlH 95 (764)
|.+.++++..|+... .++.++.++++.+|++++++.+++.. .++-+++-+..++.+|.+-|+++|++ +++++
T Consensus 128 ~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~--~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~ 205 (406)
T TIGR01814 128 YAIESQLQLHGLTVEESMVQIEPREEETLRLEDILDTIEKNG--DDIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVG 205 (406)
T ss_pred HHHHHHHHhcCCCcccceEEeccCCCCccCHHHHHHHHHhcC--CCeEEEEEeccccccceecCHHHHHHHHHHcCCEEE
Confidence 556666777787642 22567777788999999999997531 12224457888999999999999987 88999
Q ss_pred ecccc--------------------ccc-----cceeeeecCCCc--ccccccc---c-----ccc-CCccc-----C-C
Q psy13453 96 VGGVL--------------------RRV-----YSSCLVPRGQKS--LRTTVLF---H-----FLF-QHWQI-----P-L 133 (764)
Q Consensus 96 VDa~l--------------------~~~-----y~s~ll~rd~~~--l~~~~s~---~-----~d~-~d~tl-----e-~ 133 (764)
||++. .++ .++.++++.+.. +.-.+.. . +++ ..+.. + |
T Consensus 206 vD~aq~~G~~~id~~~~gvD~~~~s~hK~l~g~pG~~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G 285 (406)
T TIGR01814 206 FDLAHAVGNVPLDLHDWGVDFACWCTYKYLNAGPGAGAFVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRIS 285 (406)
T ss_pred EEcccccCCcccccccCCCCEEEEcCccccCCCCCeEEEEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeC
Confidence 99932 122 133333332211 1100000 0 000 00010 1 1
Q ss_pred CCcc-cHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcC----CCeEEeCCCC----ceeEEEEeecccccccccc
Q psy13453 134 GRRF-RALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQD----DRFELVCPPS----MGLVCFRLKVRFWDKLDNL 204 (764)
Q Consensus 134 SRr~-~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~----p~~ell~~P~----l~iV~Fry~P~~~~~~~~~ 204 (764)
+... ..+.+-+++..+-..|..+..++..++++++.+.+++. ++++++++.+ .++|+|++. .
T Consensus 286 T~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~-~-------- 356 (406)
T TIGR01814 286 NPPILSVAALRGSLDIFDQAGMEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHP-V-------- 356 (406)
T ss_pred CccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEec-C--------
Confidence 2211 22355667777777788999999999999999999875 4699987643 358888752 0
Q ss_pred ccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 205 FGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 205 ~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
+ ...+.++|.++|.+. . ..+...+|+++++..+++++++.+++.|+++
T Consensus 357 ------~----~~~~~~~L~~~gi~v-~---~~~~~~iRiS~~~~~nt~~did~l~~~l~~~ 404 (406)
T TIGR01814 357 ------P----GKAVFQALIKRGVIG-D---KREPSVIRVAPVPLYNTFVDVYDAVNVLEEI 404 (406)
T ss_pred ------C----HHHHHHHHHHCCEEE-e---ccCCCeEEEechhccCCHHHHHHHHHHHHHH
Confidence 0 146778888888642 2 2334589998878889999999999999875
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.8e-07 Score=104.93 Aligned_cols=152 Identities=17% Similarity=0.112 Sum_probs=106.7
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
..|....+|+ +++++.|.+ ..++++||++++..++.+.. . ++..|+
T Consensus 50 ~~pt~~~L~~----~lA~l~g~~-----------~~i~~~sg~~Ai~~~l~~l~----~---------------~GD~Vl 95 (386)
T PRK08045 50 GNPTRDVVQR----ALAELEGGA-----------GAVLTNTGMSAIHLVTTVFL----K---------------PGDLLV 95 (386)
T ss_pred CCccHHHHHH----HHHHHhCCC-----------eEEEECCHHHHHHHHHHHHc----C---------------CCCEEE
Confidence 3455555555 677777632 37899999998777665321 1 122467
Q ss_pred ecCCcchhHHHH----HHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHH
Q psy13453 636 TSDQSNSSVEKS----AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQ 711 (764)
Q Consensus 636 ~S~~aH~Sv~kA----a~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~ 711 (764)
+++..|.+.... +...|+.+..++ ..|++++++++++. +-+|+....++.+|.+-|+++|+++|+
T Consensus 96 ~~~~~y~~~~~~~~~~~~~~gi~v~~vd-----~~d~e~l~~~l~~~------tklV~l~sP~NPtG~v~di~~I~~ia~ 164 (386)
T PRK08045 96 APHDCYGGSYRLFDSLAKRGCYRVLFVD-----QGDEQALRAALAEK------PKLVLVESPSNPLLRVVDIAKICHLAR 164 (386)
T ss_pred EcCCCcHHHHHHHHHHHhhCCeEEEEeC-----CCCHHHHHHhcccC------CeEEEEECCCCCCCEecCHHHHHHHHH
Confidence 777777653332 223445555553 26899999888653 337778899999999999999999999
Q ss_pred hcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcC
Q psy13453 712 EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD 759 (764)
Q Consensus 712 ~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~ 759 (764)
++|+++.||.+|+.+....| .-. .||-+..++|||++.+-+
T Consensus 165 ~~g~~vivDeay~~~~~~~p----l~~---gaDivv~S~tK~l~G~~d 205 (386)
T PRK08045 165 EAGAVSVVDNTFLSPALQNP----LAL---GADLVLHSCTKYLNGHSD 205 (386)
T ss_pred HcCCEEEEECCCCccccCCc----hhh---CCCEEEeecceeccCCCC
Confidence 99999999999987644222 111 459999999999997765
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.8e-07 Score=105.22 Aligned_cols=225 Identities=12% Similarity=0.013 Sum_probs=134.4
Q ss_pred ccccCCcceeeeeHHHHHhhc---CCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchh
Q psy13453 11 AYPSETLSLLIYESFKATHSL---SGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNA 87 (764)
Q Consensus 11 ~~~~~~~~~~~YSv~KAa~~L---Gl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ 87 (764)
+.+++. .|+|+.++++.+ |+.. +.|++++++.+|+++|+++|+++ +.+++.+..++++|.+.|+++
T Consensus 97 Vi~~~~---~~~s~~~~~~~~~~~g~~~---~~v~~~~~g~~d~~~l~~~i~~~-----t~lv~~~~~~n~tG~~~~~~~ 165 (404)
T PRK14012 97 IITSKT---EHKAVLDTCRQLEREGFEV---TYLDPQSNGIIDLEKLEAAMRDD-----TILVSIMHVNNEIGVIQDIAA 165 (404)
T ss_pred EEEecC---ccHHHHHHHHHHHhCCCEE---EEEccCCCCcCCHHHHHHhcCCC-----CEEEEEECcCCCccchhhHHH
Confidence 444544 688887777665 7665 99999999999999999999753 235568888899999999999
Q ss_pred hhc-----CCCceeccccc--------------------cc----cc-eeeeecCCCccccccccccccCCcccCCCCcc
Q psy13453 88 PVS-----NGPLKVGGVLR--------------------RV----YS-SCLVPRGQKSLRTTVLFHFLFQHWQIPLGRRF 137 (764)
Q Consensus 88 ia~-----~~wlHVDa~l~--------------------~~----y~-s~ll~rd~~~l~~~~s~~~d~~d~tle~SRr~ 137 (764)
|++ ++++|+|++.. ++ .+ ++++.++...... ...+...+. .|++
T Consensus 166 I~~la~~~g~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~g~G~l~~~~~~~~~~----~~~~~g~~~--~~~~ 239 (404)
T PRK14012 166 IGEICRERGIIFHVDAAQSVGKVPIDLSKLKVDLMSFSAHKIYGPKGIGALYVRRKPRVRL----EAQMHGGGH--ERGM 239 (404)
T ss_pred HHHHHHHcCCEEEEEcchhcCCcccCcccCCCCEEEEehhhccCCCceEEEEEecCCCCCC----CceecCCCc--cCCc
Confidence 886 78999999521 11 11 3444443321110 000000000 0111
Q ss_pred c----HHHHH----HHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC-----CceeEEEEeecccccccccc
Q psy13453 138 R----ALKLW----MTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPP-----SMGLVCFRLKVRFWDKLDNL 204 (764)
Q Consensus 138 ~----ALklW----atL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P-----~l~iV~Fry~P~~~~~~~~~ 204 (764)
+ ....| +++.. -..++.+..++..++++++.+.|++.+++++..++ ....+.|.+.+
T Consensus 240 ~~gt~~~~~~~~l~~al~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~--------- 309 (404)
T PRK14012 240 RSGTLPTHQIVGMGEAARI-AKEEMATENERIRALRDRLWNGIKDIEEVYLNGDLEQRVPGNLNVSFNYVE--------- 309 (404)
T ss_pred cCCCcCHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCEEEEEEeCcC---------
Confidence 1 11222 23322 24567788899999999999999999999887542 22345665431
Q ss_pred ccCccCCccHHHHHHHHHHHhcCcEEEEe-------------ceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 205 FGTISFGDNDLNKAVYDRIIARKVIYIVK-------------GSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 205 ~~~~~~~~d~~n~~L~~~L~~~G~~~vs~-------------t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
.+++...+.+.....|..+... +.-.....+|++ .++.+++++++.+++.|+++.+.+
T Consensus 310 -------~~~~~~~l~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls-~~~~~t~~dvd~~~~~l~~~~~~~ 380 (404)
T PRK14012 310 -------GESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFS-LGRFTTEEEIDYAIELVRKSIGKL 380 (404)
T ss_pred -------HHHHHHhCCCeEEEchhhhCCCCCCCCHHHHHcCCChhhcCceEEEE-ecCCCCHHHHHHHHHHHHHHHHHH
Confidence 1112222111111111111000 000113579996 556689999999999999988775
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.1e-07 Score=99.73 Aligned_cols=224 Identities=13% Similarity=0.021 Sum_probs=130.9
Q ss_pred eeeeHHH---HHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCC-CCcEE--EEeeCCcccccccC---chhhhc
Q psy13453 20 LIYESFK---ATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSF-LCPMC--SGYCGRTLHQDIQS---LNAPVS 90 (764)
Q Consensus 20 ~~YSv~K---Aa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G-~~p~~--VatAGTT~~G~iDp---i~~ia~ 90 (764)
.||++.+ .+...|+.. +.||.++++++|+++|+++|++....+ ..+-+ +.+..+.++|.+-| ++++++
T Consensus 89 ~~~~~~~~~~~~~~~g~~~---~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~ 165 (353)
T PLN02721 89 SHIHLYENGGISTLGGVHP---RTVKNNEDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGE 165 (353)
T ss_pred cceehhcccchhhhcCcee---EecCCCcCCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHH
Confidence 6888888 467788777 889999899999999999998532111 12333 34555667787533 566654
Q ss_pred -----CCCceecccccc--------c------cceeeeecCCCcccc---cc-cccccc------CCcccCCCCcccHHH
Q psy13453 91 -----NGPLKVGGVLRR--------V------YSSCLVPRGQKSLRT---TV-LFHFLF------QHWQIPLGRRFRALK 141 (764)
Q Consensus 91 -----~~wlHVDa~l~~--------~------y~s~ll~rd~~~l~~---~~-s~~~d~------~d~tle~SRr~~ALk 141 (764)
++|+|+|+.... . +...+.+.-.+.+.. .+ ..+.++ ...+..++.+.-+..
T Consensus 166 l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (353)
T PLN02721 166 LAKRHGLKLHIDGARIFNASVALGVPVHRLVKAADSVSVCLSKGLGAPVGSVIVGSKSFIRKAKRLRKTLGGGMRQVGVL 245 (353)
T ss_pred HHHHcCCEEEEEchhhhcchhhhCCCHHHHhhhCCEEEEecccccCCceeeEEecCHHHHHhHHHHHHhcCCCeehhHHH
Confidence 899999985310 0 000001111111110 00 000000 000111111111111
Q ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEE-eCCCCceeEEEEeeccccccccccccCccCCccHHHHHHH
Q psy13453 142 LWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFEL-VCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVY 220 (764)
Q Consensus 142 lWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~el-l~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~ 220 (764)
..+++. +.+.+.+.+++..++++++.+.|++++++++ +.+|..+.+.|+..... .. -...+.
T Consensus 246 ~~~~~~--~l~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~--~~~~~~ 308 (353)
T PLN02721 246 AAAALV--ALQENVPKLEDDHKKAKLLAEGLNQIKGLRVNVAAVETNIVYFDITDGS-------------RI--TAEKLC 308 (353)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEecCCccceEEEEEccCCc-------------cc--cHHHHH
Confidence 111221 2233344566667888999999999999976 67787888777753100 01 125788
Q ss_pred HHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13453 221 DRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATE 268 (764)
Q Consensus 221 ~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~ 268 (764)
++|.+.|..+... +..++|+++ +..+++++++.+++.|+++.+
T Consensus 309 ~~L~~~gi~v~~~----~~~~lR~~~-~~~~~~~~i~~~~~~l~~~~~ 351 (353)
T PLN02721 309 KSLEEHGVLLMPG----NSSRIRVVT-HHQISDSDVQYTLSCFQQAAL 351 (353)
T ss_pred HHHHhCCcEEecC----CCceEEEEe-cCcCCHHHHHHHHHHHHHHhh
Confidence 8998888864432 346899976 456789999999999988654
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.5e-07 Score=99.65 Aligned_cols=217 Identities=10% Similarity=0.022 Sum_probs=139.9
Q ss_pred HHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCceeccc
Q psy13453 25 FKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKVGGV 99 (764)
Q Consensus 25 ~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHVDa~ 99 (764)
.+.|+..|+.. +.||+++++.+|+++++++|+++.. ..++..+...+++|.+-|+++|++ +.+++||+.
T Consensus 94 ~~~a~~~g~~~---~~v~~~~~~~~d~~~l~~~l~~~~~---~~~v~~~~~~~~tG~~~~i~~I~~l~~~~g~~livD~~ 167 (363)
T TIGR02326 94 VQIAEYLGIPH---HVVDTGEVEPPDVVEVEAILAADPA---ITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAM 167 (363)
T ss_pred HHHHHHcCCce---EEEeCCCCCCCCHHHHHHHHhhCCC---ccEEEEEeecCCccccCcHHHHHHHHHHcCCEEEEEcc
Confidence 47788899877 9999999999999999999986421 223345666899999999999886 789999994
Q ss_pred c--------------------ccc-----cc-eeeeecCCCccccc----cccccccC-Cc-cc---CCCC-----cccH
Q psy13453 100 L--------------------RRV-----YS-SCLVPRGQKSLRTT----VLFHFLFQ-HW-QI---PLGR-----RFRA 139 (764)
Q Consensus 100 l--------------------~~~-----y~-s~ll~rd~~~l~~~----~s~~~d~~-d~-tl---e~SR-----r~~A 139 (764)
. .++ .+ ++++.+.+. +... .....+.. .| .. .+.+ ....
T Consensus 168 ~~~g~~~~~~~~~~~D~~~~s~~K~l~~p~G~G~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~ 246 (363)
T TIGR02326 168 SSFGGIPIDIAELHIDYLISSANKCIQGVPGFGFVIARQAE-LAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVV 246 (363)
T ss_pred ccccCcccchhhcCccEEEecCccccccCCcceEEEECHHH-HHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHH
Confidence 2 122 11 344443321 1100 00000000 00 00 0111 1233
Q ss_pred HHHHHHHHHccHH-HHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC--Ccee-EEEEeeccccccccccccCccCCccHH
Q psy13453 140 LKLWMTLRSYGLK-GLQAYLRKHISLAKKFADLVEQDDRFELVCPP--SMGL-VCFRLKVRFWDKLDNLFGTISFGDNDL 215 (764)
Q Consensus 140 LklWatL~~lG~e-Gy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P--~l~i-V~Fry~P~~~~~~~~~~~~~~~~~d~~ 215 (764)
+.+..+++.+-.+ |+.++.++..++++++.+.|++. +++++.++ ..++ ++|++.+.. ..+
T Consensus 247 ~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-------------~~~-- 310 (363)
T TIGR02326 247 HAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRAL-GFEPLLDDEIQSPIITSFYSPEDP-------------DYR-- 310 (363)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCceEEEEECCCCC-------------CCC--
Confidence 4667778888776 48888999999999999999886 88887654 3444 567653210 011
Q ss_pred HHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 216 NKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 216 n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
..++.+.|.++|..+...... +...+|++.+. +.+.++++.+++.|+++
T Consensus 311 ~~~v~~~L~~~gi~v~~g~~~-~~~~iRi~~~~-~~~~edv~~~l~~l~~~ 359 (363)
T TIGR02326 311 FADFYQRLKEQGFVIYPGKVS-QVDCFRIGNIG-EVDAADITRLLTAIGKA 359 (363)
T ss_pred HHHHHHHHHHCCEEEECCcCC-CCCEEEEecCC-CCCHHHHHHHHHHHHHH
Confidence 246888888888765433222 34689997554 56899999999999775
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.1e-07 Score=103.09 Aligned_cols=167 Identities=8% Similarity=0.069 Sum_probs=113.0
Q ss_pred CchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEe
Q psy13453 557 SPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYT 636 (764)
Q Consensus 557 sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~ 636 (764)
......+.+.+.+|+.+-+|++-+ ....++|+|+++++..++.+.. . +...|++
T Consensus 107 ~~G~~~lR~aiA~~~~~~~~~~~~-------~~~I~it~G~~~al~~~~~~l~----~---------------pGd~Vlv 160 (462)
T PLN02187 107 GAGILPARRAVADYMNRDLPHKLT-------PEDIFLTAGCNQGIEIVFESLA----R---------------PNANILL 160 (462)
T ss_pred CCChHHHHHHHHHHHHHhcCCCCC-------cccEEEeCCHHHHHHHHHHHhc----C---------------CCCEEEE
Confidence 334455666677777766665321 2467899999998877665331 1 1124666
Q ss_pred cCCcchhHHHHHHhCCCceEEEecC--CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc---cHHHHHHHHH
Q psy13453 637 SDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD---NLEELGPICQ 711 (764)
Q Consensus 637 S~~aH~Sv~kAa~~lGl~v~~Vp~d--~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD---pl~eIa~i~~ 711 (764)
..-+.......+...|++++.++.. +++.+|+++|++++++. +.+|+.+..++.||.+- .+++|+++|+
T Consensus 161 ~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~~~------~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~ 234 (462)
T PLN02187 161 PRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADEN------TVAMVVINPNNPCGNVYSHDHLKKVAETAR 234 (462)
T ss_pred eCCCCccHHHHHHHcCCEEEEEeCccccCCccCHHHHHHhcCCC------cEEEEEeCCCCCCCCccCHHHHHHHHHHHH
Confidence 6666766777788899999999874 46899999999887543 34777777899999985 4888999999
Q ss_pred hcCCEEEEeccccccccccchhhh--hhcCCCcccEEE-EcCCccCCCC
Q psy13453 712 EYNIWLHVDAAYAGSALLLPEYAH--LKRGLEYVDSFD-FNTHKWLLVN 757 (764)
Q Consensus 712 ~~glwLHVDaA~Gg~~l~~~~~r~--~l~gie~aDSit-~d~HK~l~~P 757 (764)
+||+|+.+|.+|+-...-.+.+.. .+... ...|+ -++-|.++.|
T Consensus 235 ~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~--~~vi~l~SfSK~f~~p 281 (462)
T PLN02187 235 KLGIMVISDEVYDRTIFGDNPFVSMGKFASI--VPVLTLAGISKGWVVP 281 (462)
T ss_pred HCCCEEEEeccccccccCCCCceeHHHhccC--CcEEEEecchhhcCCc
Confidence 999999999999874431111111 11111 12444 4788986655
|
|
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.6e-07 Score=99.21 Aligned_cols=222 Identities=12% Similarity=0.045 Sum_probs=135.6
Q ss_pred eeeeHHHHH---hhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----C
Q psy13453 20 LIYESFKAT---HSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----N 91 (764)
Q Consensus 20 ~~YSv~KAa---~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~ 91 (764)
.|.|+..++ +..|... +.||+++++++|+++|+++++++ +-+++-+.+++++|.+.|++++++ +
T Consensus 97 ~h~s~~~~~~~~~~~g~~v---~~v~~~~~~~~d~~~l~~~l~~~-----~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~ 168 (381)
T PRK02948 97 EHASIHSYFQSLESQGYTV---TEIPVDKSGLIRLVDLERAITPD-----TVLASIQHANSEIGTIQPIAEIGALLKKYN 168 (381)
T ss_pred ccHHHHHHHHHHHhCCCEE---EEEeeCCCCCCCHHHHHHhcCCC-----CEEEEEECCcCCcEeehhHHHHHHHHHHcC
Confidence 566665554 4456655 89999988999999999998642 224467889999999999999876 7
Q ss_pred CCceeccccc--------------------cc-cc----eeeeecCCCccccccccccccCCcc-cCCCCc-ccHHHHHH
Q psy13453 92 GPLKVGGVLR--------------------RV-YS----SCLVPRGQKSLRTTVLFHFLFQHWQ-IPLGRR-FRALKLWM 144 (764)
Q Consensus 92 ~wlHVDa~l~--------------------~~-y~----s~ll~rd~~~l~~~~s~~~d~~d~t-le~SRr-~~ALklWa 144 (764)
+|+|||+... ++ ++ ++++.+....+...+.. ...... ..++-. ...+.+-+
T Consensus 169 ~~vivD~~~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~--~~~~~~~~~~t~~~~~~~a~~~ 246 (381)
T PRK02948 169 VLFHSDCVQTFGKLPIDVFEMGIDSLSVSAHKIYGPKGVGAVYINPQVRWKPVFPG--TTHEKGFRPGTVNVPGIAAFLT 246 (381)
T ss_pred CEEEEEChhhccccccCcccCCCCEEEecHHhcCCCCcEEEEEEcCCCCCCCcccC--CCCCCCcCCCCccHHHHHHHHH
Confidence 8999998421 00 11 23333322111100000 000000 111221 12234455
Q ss_pred HHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe--CCCC---ceeEEEEeeccccccccccccCccCCccHHHHHH
Q psy13453 145 TLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELV--CPPS---MGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAV 219 (764)
Q Consensus 145 tL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell--~~P~---l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L 219 (764)
+++.+ .++..+..++..++++++.+.|++. ++++. +++. ..+++|... ..+ ..++
T Consensus 247 al~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-~~~v~~~~~~~~~~~~i~~~~~~----------------~~~--~~~~ 306 (381)
T PRK02948 247 AAENI-LKNMQEESLRFKELRSYFLEQIQTL-PLPIEVEGHSTSCLPHIIGVTIK----------------GIE--GQYT 306 (381)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEeCCCccCcCCEEEEEeC----------------CCC--HHHH
Confidence 55544 3567888899999999999999987 44433 2222 235667532 111 1345
Q ss_pred HHHHHhcCcEEEEece----e---------------CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHc
Q psy13453 220 YDRIIARKVIYIVKGS----F---------------QDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLR 272 (764)
Q Consensus 220 ~~~L~~~G~~~vs~t~----l---------------~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~ 272 (764)
...|.++|...-.... + ....++|+++ +..+++++++.+++.|+++.+.+-+
T Consensus 307 ~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~-~~~~t~~di~~l~~~l~~~~~~~~~ 377 (381)
T PRK02948 307 MLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSF-GQQTTKDQIDTTIHALETIGNQFYR 377 (381)
T ss_pred HHhcccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEc-CCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 6677777875543221 1 1236899985 5778899999999999998766543
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.2e-07 Score=104.89 Aligned_cols=150 Identities=15% Similarity=0.147 Sum_probs=115.5
Q ss_pred ccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCc
Q psy13453 552 FSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631 (764)
Q Consensus 552 ~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~ 631 (764)
..|..+....++-+.+.+|+.+..|++-+ ....++|+|+++++.+++.+... . +.
T Consensus 109 ~~Y~~~~G~~~LR~aia~~~~~~~g~~~~-------~~~I~it~Ga~~al~~~~~~l~~----~--------------~g 163 (481)
T PTZ00377 109 GAYTDSAGYPFVRKAVAAFIERRDGVPKD-------PSDIFLTDGASSGIKLLLQLLIG----D--------------PS 163 (481)
T ss_pred cCcCcccCCHHHHHHHHHHHHHhcCCCCC-------hhhEEEcCCHHHHHHHHHHHhcc----C--------------CC
Confidence 44555556777888888999887776532 24688999999998777654310 0 12
Q ss_pred eEEEecCCcchhHHHHHHhCCCceEEEecCC--CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc---HHHH
Q psy13453 632 LVAYTSDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN---LEEL 706 (764)
Q Consensus 632 ~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~--~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp---l~eI 706 (764)
..|++..-++......++..|.+++.||+++ ++.+|+++|++++++..++|..+-+|+.+..++.||.+-+ +++|
T Consensus 164 D~Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i 243 (481)
T PTZ00377 164 DGVMIPIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEI 243 (481)
T ss_pred CEEEECCCCchhHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHH
Confidence 2477788888888889999999999999974 3589999999999875555545656666678899999966 8889
Q ss_pred HHHHHhcCCEEEEecccccc
Q psy13453 707 GPICQEYNIWLHVDAAYAGS 726 (764)
Q Consensus 707 a~i~~~~glwLHVDaA~Gg~ 726 (764)
+++|++|++|+++|-+|+-.
T Consensus 244 ~~~a~~~~~~iI~De~Y~~l 263 (481)
T PTZ00377 244 IKFCYEKGIVLMADEVYQEN 263 (481)
T ss_pred HHHHHHCCCEEEEehhhHhh
Confidence 99999999999999999863
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.8e-07 Score=104.43 Aligned_cols=162 Identities=10% Similarity=0.099 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCC
Q psy13453 560 CTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQ 639 (764)
Q Consensus 560 ~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~ 639 (764)
......++.+.+++++|.++ ..+|++|++ ++..++.+. .. +..+|++...
T Consensus 152 ~~~~~~~Lee~La~~~~~~~----------~i~~s~G~~-a~~sai~a~----~~---------------~gd~Ii~d~~ 201 (481)
T PLN02822 152 TIDVHLDCETKIAKFLGTPD----------SILYSYGLS-TIFSVIPAF----CK---------------KGDIIVADEG 201 (481)
T ss_pred CHHHHHHHHHHHHHHhCCCC----------EEEECCHHH-HHHHHHHHh----CC---------------CCCEEEEeCC
Confidence 35566667777888887654 356666655 565544422 11 1235778899
Q ss_pred cchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhc----CCCceEEEEeeccCCccccccHHHHHHHHHhcCC
Q psy13453 640 SNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAK----GLIPCCLIATLGTTGTCAFDNLEELGPICQEYNI 715 (764)
Q Consensus 640 aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~----G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~gl 715 (764)
.|+++..++.+.|.+++.++.+ |.++|+..+++..++ .....+|+...-...+|.+-|+++|+++|++||+
T Consensus 202 ~H~s~~~~~~ls~~~~~~~~~n-----d~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~ 276 (481)
T PLN02822 202 VHWGIQNGLYLSRSTIVYFKHN-----DMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRF 276 (481)
T ss_pred ccHHHHHHHHHcCCeEEEECCC-----CHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCC
Confidence 9999999999999888888765 466777777654322 1222466665566679999999999999999999
Q ss_pred EEEEeccccccccccchhhh--hhcCC--CcccEEEEcCCccCCCC
Q psy13453 716 WLHVDAAYAGSALLLPEYAH--LKRGL--EYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 716 wLHVDaA~Gg~~l~~~~~r~--~l~gi--e~aDSit~d~HK~l~~P 757 (764)
+|++|-+|+-+.+ -+..+. ..-|+ +..|-++.++.|.++.+
T Consensus 277 ~LIvDEa~s~gvl-G~~G~G~~e~~~v~~~~~dii~~s~sKalg~~ 321 (481)
T PLN02822 277 RVLLDESNSFGVL-GKSGRGLSEHFGVPIEKIDIITAAMGHALATE 321 (481)
T ss_pred EEEEECCcccccc-CCCCCChHHHcCCCCCCCeEEEecchhhhhhC
Confidence 9999999984332 211111 11234 35788999999998743
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.3e-07 Score=100.57 Aligned_cols=160 Identities=17% Similarity=0.119 Sum_probs=105.8
Q ss_pred HHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhH
Q psy13453 565 VLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV 644 (764)
Q Consensus 565 ~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv 644 (764)
.++.++|++++|.+. ....+||+||++||..|+.++|.. .+ +.+|.....-|-+.
T Consensus 88 ~~la~~l~~~~~~~~--------~~~v~~~~sgsea~~~al~~~~~~--g~---------------~~ii~~~~~yhg~~ 142 (398)
T PRK03244 88 IALAERLVELLGAPE--------GGRVFFCNSGAEANEAAFKLARLT--GR---------------TKIVAAEGGFHGRT 142 (398)
T ss_pred HHHHHHHHHhCCCCC--------CCEEEEeCchHHHHHHHHHHHHHH--CC---------------CeEEEECCCcCCcc
Confidence 467778888887532 125789999999999999988763 11 12455555666665
Q ss_pred HHHHHhCCC------------ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc----HHHHHH
Q psy13453 645 EKSAIIGDV------------PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN----LEELGP 708 (764)
Q Consensus 645 ~kAa~~lGl------------~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp----l~eIa~ 708 (764)
..+..+.|. ++..+|. .|+++|++.+.+ .+.+|+..-..+.+|.+-| +++|.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~~~~------~~~aviiep~~~~~G~~~~~~~~l~~l~~ 211 (398)
T PRK03244 143 MGALALTGQPAKRAPFEPLPGGVEHVPY-----GDVDALAAAVDD------DTAAVFLEPIQGEAGVVPPPAGYLAAARE 211 (398)
T ss_pred HHHHhccCCcccccCCCCCCCCceEeCC-----CCHHHHHHhhcC------CeEEEEEecccCCCCCcCCCHHHHHHHHH
Confidence 555544442 2333332 378899988742 2446666666788898876 999999
Q ss_pred HHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 709 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 709 i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
+|++||++|++|.+|.+.-....-+.....|+ ..|-+++ .|+++..+.+|.+
T Consensus 212 l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~-~pDi~t~--sK~l~~G~~ig~~ 263 (398)
T PRK03244 212 ITDRHGALLVLDEVQTGIGRTGAWFAHQHDGV-TPDVVTL--AKGLGGGLPIGAC 263 (398)
T ss_pred HHHHcCCEEEEeccccCCcccchHHhhhhhCC-CCCEEEE--chhhhCCcccEEE
Confidence 99999999999999987422111111122354 4676655 6999865666654
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.7e-07 Score=101.13 Aligned_cols=153 Identities=16% Similarity=0.012 Sum_probs=105.4
Q ss_pred HHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhH
Q psy13453 565 VLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV 644 (764)
Q Consensus 565 ~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv 644 (764)
.++.+++++++|.+++ ..++|+|+++++... ..+ +. ++ .|++.+-++.+.
T Consensus 50 ~~lr~~la~~~~~~~~---------~i~~t~G~~~~i~~~-~~~----l~---------------~g-~vl~~~p~y~~~ 99 (330)
T TIGR01140 50 DELRAAAAAYYGLPAA---------SVLPVNGAQEAIYLL-PRL----LA---------------PG-RVLVLAPTYSEY 99 (330)
T ss_pred HHHHHHHHHHhCCChh---------hEEECCCHHHHHHHH-HHH----hC---------------CC-eEEEeCCCcHHH
Confidence 5566788888887542 577888888876543 221 11 12 255667778888
Q ss_pred HHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc---HHHHHHHHHhcCCEEEEec
Q psy13453 645 EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN---LEELGPICQEYNIWLHVDA 721 (764)
Q Consensus 645 ~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp---l~eIa~i~~~~glwLHVDa 721 (764)
...+...|++++.++ |+++|++.+++ +-+|+.+..++.+|.+-+ +.+|+++|+++|+++++|.
T Consensus 100 ~~~~~~~g~~~~~~~-------d~~~l~~~~~~-------~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De 165 (330)
T TIGR01140 100 ARAWRAAGHEVVELP-------DLDRLPAALEE-------LDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDE 165 (330)
T ss_pred HHHHHHcCCEEEEeC-------CHHHHHhhccc-------CCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEEC
Confidence 888899999988887 78999888732 126667888999999987 6667788899999999999
Q ss_pred cccccccccchhhhhhcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 722 AYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 722 A~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
+|+.+.. .+......+ -...+-+..+++|+++.| ..+|.+
T Consensus 166 ~y~~~~~-~~~~~~~~~-~~~~~i~~~S~SK~~g~~G~R~G~i 206 (330)
T TIGR01140 166 AFIDFTP-DASLAPQAA-RFPGLVVLRSLTKFFGLAGLRLGFV 206 (330)
T ss_pred cccccCC-ccchhhHhc-cCCCEEEEEecchhhcCchhhhhhe
Confidence 9986542 221111111 112356777999999855 445654
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=98.67 E-value=9e-07 Score=96.90 Aligned_cols=218 Identities=11% Similarity=0.032 Sum_probs=137.1
Q ss_pred HHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCceecc
Q psy13453 24 SFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKVGG 98 (764)
Q Consensus 24 v~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHVDa 98 (764)
+.++++.+|+.. +.||+++++.+|+++++++|+++. +..+++.+...+++|.+-|++++++ +++++||+
T Consensus 89 ~~~~a~~~g~~~---~~i~~~~~~~~d~~~l~~~l~~~~---~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~ 162 (355)
T TIGR03301 89 LAKICEYLGIPH---TDLNFSEYEPPDLNRIEEALAADP---DITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDA 162 (355)
T ss_pred HHHHHHHcCCce---EEEecCCCCCCCHHHHHHHHHhCC---CceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEe
Confidence 467889999987 999998889999999999998642 1123345678889999999998886 88999998
Q ss_pred ccc--------------------cc-c----c-eeeeecCCCcccccccc-ccccCCc---------c--cCCCCc-ccH
Q psy13453 99 VLR--------------------RV-Y----S-SCLVPRGQKSLRTTVLF-HFLFQHW---------Q--IPLGRR-FRA 139 (764)
Q Consensus 99 ~l~--------------------~~-y----~-s~ll~rd~~~l~~~~s~-~~d~~d~---------t--le~SRr-~~A 139 (764)
... ++ + + ++++.+++ .+...... ...+.++ . ...+-. ...
T Consensus 163 ~~s~g~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 241 (355)
T TIGR03301 163 MSSFGAIPIDIEELDVDALIASANKCLEGVPGFGFVIARRD-LLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTV 241 (355)
T ss_pred ccccCCcccchhhcCccEEEecCCcccccCCceeEEEECHH-HHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHH
Confidence 421 11 0 0 23333221 11000000 0000000 0 001111 112
Q ss_pred HHHHHHHHHccHHH-HHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC--ce-eEEEEeeccccccccccccCccCCccHH
Q psy13453 140 LKLWMTLRSYGLKG-LQAYLRKHISLAKKFADLVEQDDRFELVCPPS--MG-LVCFRLKVRFWDKLDNLFGTISFGDNDL 215 (764)
Q Consensus 140 LklWatL~~lG~eG-y~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~--l~-iV~Fry~P~~~~~~~~~~~~~~~~~d~~ 215 (764)
..+..+++.+-.+| +.+..++..+.++++.+.|++. +++++.++. .. +++|+..+ . .+.-
T Consensus 242 ~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-~--------------~~~~ 305 (355)
T TIGR03301 242 YAFAQALEELEAEGGVPARIARYRRNRELLVDGLRAL-GFQPLLPERWQSPIIVSFLYPD-D--------------PDFD 305 (355)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHc-CCeeecCCCCCCCcEEEEECCC-C--------------Ccch
Confidence 34567788887777 8889999999999999999886 788776644 22 45665421 0 0001
Q ss_pred HHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 216 NKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 216 n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
..++.++|.++|........ ....++|+++ +..+++++++.+++.|+++
T Consensus 306 ~~~~~~~l~~~gi~i~~~~~-~~~~~iRis~-~~~~~~~~i~~~~~~l~~~ 354 (355)
T TIGR03301 306 FDDFYQELKERGFVIYPGKL-TLADTFRIGT-IGEIDAADIERLLEAIKDA 354 (355)
T ss_pred HHHHHHHHHHCCEEEECCcc-ccccEEEEec-CCCCCHHHHHHHHHHHHhh
Confidence 24788889889875443321 1236899954 4457899999999999764
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.4e-07 Score=98.01 Aligned_cols=156 Identities=12% Similarity=-0.006 Sum_probs=108.2
Q ss_pred HHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHH
Q psy13453 566 LVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVE 645 (764)
Q Consensus 566 ~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~ 645 (764)
+..+.+++.++.++ ...++|+|+++++..++.+. .. +...|+++.-+.....
T Consensus 63 ~lr~~ia~~~~~~~---------~~i~it~G~~~~l~~~~~~l----~~---------------~gd~Vlv~~p~y~~~~ 114 (351)
T PRK14807 63 KLREELARYCSVVP---------TNIFVGNGSDEIIHLIMLAF----IN---------------KGDVVIYPHPSFAMYS 114 (351)
T ss_pred HHHHHHHHHhCCCc---------ccEEEecCHHHHHHHHHHHh----cC---------------CCCEEEEeCCChHHHH
Confidence 34455566667654 25789999999876655432 11 1123555666666667
Q ss_pred HHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccc
Q psy13453 646 KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAG 725 (764)
Q Consensus 646 kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg 725 (764)
.+++..|.+++.|+.++++.+|+++|++++++. .+-+|+.+..++.+|.+-+.+++.++|++++.++.+|.+|+.
T Consensus 115 ~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~-----~~k~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~ 189 (351)
T PRK14807 115 VYSKIAGAVEIPVKLKEDYTYDVGSFIKVIEKY-----QPKLVFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFE 189 (351)
T ss_pred HHHHHcCCeEEEeecCCCCCCCHHHHHHHhhcc-----CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEeCcchh
Confidence 778889999999999888899999999998642 133666678899999999999999999999999999999976
Q ss_pred cccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 726 SALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 726 ~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
.. .......+...++ --+.-++.|.++.|
T Consensus 190 ~~--~~~~~~~~~~~~~-vi~~~S~SK~~~~~ 218 (351)
T PRK14807 190 FY--GNTIVDVINEFEN-LIVLRTLSKAFGLA 218 (351)
T ss_pred hc--ccchHHHhhhCCC-EEEEecchHhcccc
Confidence 32 1111112221111 24557888988744
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.1e-07 Score=102.32 Aligned_cols=151 Identities=16% Similarity=0.109 Sum_probs=106.0
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
..|....+|+ .++++.|.+. .++++||++++..++. .+.. +..|+
T Consensus 50 ~~pt~~~le~----~la~l~g~~~-----------~~~~~sG~~ai~~~~~-----ll~~---------------Gd~Vl 94 (366)
T PRK08247 50 GNPTRGVLEQ----AIADLEGGDQ-----------GFACSSGMAAIQLVMS-----LFRS---------------GDELI 94 (366)
T ss_pred CCchHHHHHH----HHHHHhCCCc-----------EEEEcCHHHHHHHHHH-----HhCC---------------CCEEE
Confidence 3455555555 6788888753 4888999887754432 1111 11355
Q ss_pred ecCCcchh----HHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHH
Q psy13453 636 TSDQSNSS----VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQ 711 (764)
Q Consensus 636 ~S~~aH~S----v~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~ 711 (764)
++...+.+ +.+.+...|++++.++. .|+++|+++|++. +-+|+....++.+|...++++|+++|+
T Consensus 95 ~~~~~y~~t~~~~~~~~~~~G~~v~~vd~-----~d~~~l~~~i~~~------tklv~le~P~NP~~~~~dl~~I~~la~ 163 (366)
T PRK08247 95 VSSDLYGGTYRLFEEHWKKWNVRFVYVNT-----ASLKAIEQAITPN------TKAIFIETPTNPLMQETDIAAIAKIAK 163 (366)
T ss_pred EecCCcCcHHHHHHHHhhccCceEEEECC-----CCHHHHHHhcccC------ceEEEEECCCCCCCcHHHHHHHHHHHH
Confidence 55554443 34455668888888875 3899999988654 337777788888999999999999999
Q ss_pred hcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcC
Q psy13453 712 EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD 759 (764)
Q Consensus 712 ~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~ 759 (764)
+||+|+++|.+|+......|- . ..+|-+..+++|+++.+-+
T Consensus 164 ~~g~~lIvD~t~~~~~~~~p~-~------~g~di~i~S~sK~~~g~~d 204 (366)
T PRK08247 164 KHGLLLIVDNTFYTPVLQRPL-E------EGADIVIHSATKYLGGHND 204 (366)
T ss_pred HcCCEEEEECCCccccccCch-h------cCCcEEEeecceeccCCCc
Confidence 999999999999765443321 1 2469999999999986643
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.3e-07 Score=98.88 Aligned_cols=173 Identities=13% Similarity=0.079 Sum_probs=118.9
Q ss_pred ccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCc
Q psy13453 552 FSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631 (764)
Q Consensus 552 ~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~ 631 (764)
..|........+.+.+.+|+.+..|++-+ ....++|+|+++++..++.+.. . ++
T Consensus 60 ~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~-------~~~i~it~G~~~al~~~~~~~~----~---------------~g 113 (384)
T PRK06348 60 TRYTDSGGDVELIEEIIKYYSKNYDLSFK-------RNEIMATVGACHGMYLALQSIL----D---------------PG 113 (384)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHhCCCCC-------hhhEEEcCChHHHHHHHHHHhc----C---------------CC
Confidence 34544444567888888999887776432 2467899999998776665431 1 11
Q ss_pred eEEEecCCcchhHHHHHHhCCCceEEEecC--CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc---cHHHH
Q psy13453 632 LVAYTSDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD---NLEEL 706 (764)
Q Consensus 632 ~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d--~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD---pl~eI 706 (764)
..|++..-++.....++...|..++.+|.+ +++.+|+++|++.+++. +-+|+.+..++.+|.+- .+++|
T Consensus 114 d~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~p~NPtG~~~s~~~~~~l 187 (384)
T PRK06348 114 DEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLEALITSK------TKAIILNSPNNPTGAVFSKETLEEI 187 (384)
T ss_pred CEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCcC------ccEEEEeCCCCCCCcCCCHHHHHHH
Confidence 247778888888888999999998888874 34679999999988543 22455567888899884 58888
Q ss_pred HHHHHhcCCEEEEeccccccccccchhhh--hhcCCCcccEEEEcCCccCCCC
Q psy13453 707 GPICQEYNIWLHVDAAYAGSALLLPEYAH--LKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 707 a~i~~~~glwLHVDaA~Gg~~l~~~~~r~--~l~gie~aDSit~d~HK~l~~P 757 (764)
.++|++|++++++|.+|+....-. +... .+.+...-.-+.-++-|.++.|
T Consensus 188 ~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~vi~~~SfSK~~~l~ 239 (384)
T PRK06348 188 AKIAIEYDLFIISDEVYDGFSFYE-DFVPMATLAGMPERTITFGSFSKDFAMT 239 (384)
T ss_pred HHHHHHCCeEEEEecccccceeCC-CccchhhcCCCcCcEEEEecchhccCCc
Confidence 899999999999999998754321 1111 1122211123445889988744
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.4e-07 Score=100.86 Aligned_cols=187 Identities=13% Similarity=0.041 Sum_probs=119.1
Q ss_pred HHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhcc
Q psy13453 539 VGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQS 618 (764)
Q Consensus 539 lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~ 618 (764)
+.+.+...+......|.......++.+.+.+++.+.+|.+-. ....++|+|+++++..++.+. ..
T Consensus 51 ~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~-------~~~i~~t~G~~~al~~~~~~~----~~---- 115 (402)
T PRK06107 51 IKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYA-------DNEITVGGGAKQAIFLALMAT----LE---- 115 (402)
T ss_pred HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCC-------hhhEEEeCCHHHHHHHHHHHh----cC----
Confidence 444555444433333444445567778888999988887431 236889999999987776421 11
Q ss_pred CCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecC--CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCC
Q psy13453 619 KNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTG 696 (764)
Q Consensus 619 ~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d--~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~ 696 (764)
++..|++++-+++....+....|..++.++++ +++.+|+++|++++.+. +-+|+.+..++.
T Consensus 116 -----------~gd~vl~~~p~y~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~------~~~v~l~~p~NP 178 (402)
T PRK06107 116 -----------AGDEVIIPAPYWVSYPDMVLANDGTPVIVACPEEQGFKLTPEALEAAITPR------TRWLILNAPSNP 178 (402)
T ss_pred -----------CCCEEEEecCCCcCHHHHHHHcCCEEEEecCCcccCCCCCHHHHHhhcCcC------ceEEEEECCCCC
Confidence 12246666666555566666777777788875 34579999999987532 346777788999
Q ss_pred ccccc---cHHHHHHHHHhc-CCEEEEecccccccccc---chhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 697 TCAFD---NLEELGPICQEY-NIWLHVDAAYAGSALLL---PEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 697 ~GaiD---pl~eIa~i~~~~-glwLHVDaA~Gg~~l~~---~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
+|.+- .+++|+++|++| ++|+++|-+|+-...-. +.......++..---+..+++|.++.|
T Consensus 179 tG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~p 246 (402)
T PRK06107 179 TGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMT 246 (402)
T ss_pred CCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCc
Confidence 99774 677788889998 99999999997532211 111111122211123345779988644
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.1e-06 Score=96.70 Aligned_cols=179 Identities=15% Similarity=0.173 Sum_probs=120.7
Q ss_pred ccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCC-cEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccC
Q psy13453 552 FSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPG-GGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRN 630 (764)
Q Consensus 552 ~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~-~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~ 630 (764)
..|........+-+.+.+|+.+..|++-+ .. ..++|+|++++...++.+.. . +
T Consensus 65 ~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~-------~~~~I~it~G~~~al~~~~~~l~----~---------------~ 118 (403)
T PRK08636 65 HGYSVSKGIYKLRLAICNWYKRKYNVDLD-------PETEVVATMGSKEGYVHLVQAIT----N---------------P 118 (403)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCCC-------CCCeEEECCChHHHHHHHHHHhC----C---------------C
Confidence 34444445567888888999888886532 12 47899999998766654321 1 1
Q ss_pred ceEEEecCCcchhHHHHHHhCCCceEEEecC--CCCcccHHHHHHHHHHhhhc-CCCceEEEEeeccCCcccc---ccHH
Q psy13453 631 KLVAYTSDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAK-GLIPCCLIATLGTTGTCAF---DNLE 704 (764)
Q Consensus 631 ~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d--~~g~md~~~Le~~I~~~~~~-G~~p~~VvataGTT~~Gai---Dpl~ 704 (764)
+..|++.+-+......++...|.+++.||++ +++.+|+++|.+.+++..++ +.++.+|+.+..++.||.+ +.++
T Consensus 119 gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~ 198 (403)
T PRK08636 119 GDVAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYE 198 (403)
T ss_pred CCEEEEcCCCCcchHHHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHH
Confidence 2357777777777888889999999999985 45789999876666554332 2346788888888999988 4567
Q ss_pred HHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcc-c-EE-EEcCCccCCCC
Q psy13453 705 ELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYV-D-SF-DFNTHKWLLVN 757 (764)
Q Consensus 705 eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~a-D-Si-t~d~HK~l~~P 757 (764)
+|+++|++|++|+++|-+|+-...--... ..+..+... | .| +-++.|.++.|
T Consensus 199 ~l~~~a~~~~~~II~De~Y~~l~~~~~~~-~~~~~~~~~~~~~i~~~S~SK~~~~~ 253 (403)
T PRK08636 199 RLVALAKKERFYIISDIAYADITFDGYKT-PSILEVEGAKDVAVESYTLSKSYNMA 253 (403)
T ss_pred HHHHHHHHcCcEEEEeccchhhccCCCCC-CChhcCCCccccEEEEEecccccCCc
Confidence 78888999999999999998643211011 111222211 2 23 45899998644
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1e-06 Score=98.72 Aligned_cols=176 Identities=16% Similarity=0.144 Sum_probs=108.1
Q ss_pred ccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceE
Q psy13453 554 WLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633 (764)
Q Consensus 554 ~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~v 633 (764)
|.......++.+.+.+++.. .|.+-+ ....++|+|+|+++..++.+. .. +...
T Consensus 62 Y~~~~g~~~lr~~ia~~~~~-~~~~~~-------~~~i~~t~G~~~al~~~~~~l----~~---------------~gd~ 114 (397)
T PRK07568 62 YSHSQGIPELREAFAKYYKK-WGIDVE-------PDEILITNGGSEAILFAMMAI----CD---------------PGDE 114 (397)
T ss_pred cCCCCCCHHHHHHHHHHHHH-hCCCCC-------cceEEEcCChHHHHHHHHHHh----cC---------------CCCE
Confidence 33333445555555555542 333211 135789999999987765432 11 1123
Q ss_pred EEecCCcchhHHHHHHhCCCceEEEecC-CCC-c-ccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc---cHHHHH
Q psy13453 634 AYTSDQSNSSVEKSAIIGDVPVRQLRSD-DNG-V-LRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD---NLEELG 707 (764)
Q Consensus 634 i~~S~~aH~Sv~kAa~~lGl~v~~Vp~d-~~g-~-md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD---pl~eIa 707 (764)
|++++-.+......++..|++++.|+.+ ++| . .++++|++++++. +-+|+.+..++.+|.+- ++++|+
T Consensus 115 Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~~~------~~~v~i~~p~NPtG~~~~~~~~~~i~ 188 (397)
T PRK07568 115 ILVPEPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITPK------TKAILISNPGNPTGVVYTKEELEMLA 188 (397)
T ss_pred EEEecCCCccHHHHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcCcc------ceEEEEECCCCCCCccCCHHHHHHHH
Confidence 5555555555556677889999999986 344 3 3578998888543 33677777889999875 588999
Q ss_pred HHHHhcCCEEEEeccccccccccchhhhh--hcCCCcccEEEEcCCccCCCC-cCcee
Q psy13453 708 PICQEYNIWLHVDAAYAGSALLLPEYAHL--KRGLEYVDSFDFNTHKWLLVN-FDCSA 762 (764)
Q Consensus 708 ~i~~~~glwLHVDaA~Gg~~l~~~~~r~~--l~gie~aDSit~d~HK~l~~P-~~~g~ 762 (764)
++|+++|+|+++|.+|+....-.+..... +.+...---+.-+++|.++.| .-+|.
T Consensus 189 ~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~ 246 (397)
T PRK07568 189 EIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGC 246 (397)
T ss_pred HHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccCCCcceEE
Confidence 99999999999999998753211111111 112110113445889988743 33444
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.4e-07 Score=103.01 Aligned_cols=152 Identities=14% Similarity=0.106 Sum_probs=111.2
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
..|-...+|+ .++++.|.. ..+.|++|+.|+.+++.+.. + +...|+
T Consensus 59 ~nPtv~~lE~----~la~leg~~-----------~av~~~SG~aAi~~al~all----~---------------~GD~VI 104 (432)
T PRK06702 59 GNPTLAAFEQ----KLAELEGGV-----------GAVATASGQAAIMLAVLNIC----S---------------SGDHLL 104 (432)
T ss_pred CCcHHHHHHH----HHHHHhCCC-----------cEEEECCHHHHHHHHHHHhc----C---------------CCCEEE
Confidence 3677777887 456666543 36889999999988887441 1 122577
Q ss_pred ecCCcchhHHHH----HHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHH
Q psy13453 636 TSDQSNSSVEKS----AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQ 711 (764)
Q Consensus 636 ~S~~aH~Sv~kA----a~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~ 711 (764)
++.....+.... ...+|+.++.+. ..+|+++++++|++.++ +|++...++.++.+-||++|+++|+
T Consensus 105 ~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd----~~~d~~~l~~~I~~~Tk------~I~~e~pgnP~~~v~Di~~I~~iA~ 174 (432)
T PRK06702 105 CSSTVYGGTFNLFGVSLRKLGIDVTFFN----PNLTADEIVALANDKTK------LVYAESLGNPAMNVLNFKEFSDAAK 174 (432)
T ss_pred ECCCchHHHHHHHHHHHHHCCCEEEEEC----CCCCHHHHHHhCCcCCe------EEEEEcCCCccccccCHHHHHHHHH
Confidence 788776544443 567899888874 35899999999977543 6666778888999999999999999
Q ss_pred hcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCc
Q psy13453 712 EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNF 758 (764)
Q Consensus 712 ~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~ 758 (764)
++|+++.+|.+|+...+.-| +. . .||-+.-+..||++..-
T Consensus 175 ~~gi~livD~T~~tP~~~~p-l~---~---GADIvv~S~TKy~~Ghs 214 (432)
T PRK06702 175 ELEVPFIVDNTLATPYLCQA-FE---H---GANIIVHSTTKYIDGHA 214 (432)
T ss_pred HcCCEEEEECCCCchhhCCh-hh---c---CCCEEEEccccccCCCc
Confidence 99999999999975433222 11 2 36999999999887653
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.5e-07 Score=101.70 Aligned_cols=152 Identities=15% Similarity=0.122 Sum_probs=106.3
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
..|....+|+ +++++.|- + ..++|+||++++..++.+. .. ++..|+
T Consensus 49 ~~p~~~~le~----~lA~l~g~-~----------~v~~~~gg~~Ai~~~l~al----l~---------------~GD~Vl 94 (382)
T TIGR02080 49 GNPTRDLLQQ----ALAELEGG-A----------GAVVTNTGMSAIHLVTTAL----LG---------------PDDLLV 94 (382)
T ss_pred CCchHHHHHH----HHHHHhCC-C----------cEEEEcCHHHHHHHHHHHH----cC---------------CCCEEE
Confidence 4455555555 77777773 2 4789999999887766543 11 122467
Q ss_pred ecCCcchhHHHHH----HhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHH
Q psy13453 636 TSDQSNSSVEKSA----IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQ 711 (764)
Q Consensus 636 ~S~~aH~Sv~kAa----~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~ 711 (764)
++...+.+..... ...|+.+..++. .|+++++++|++. +-+|+.+..++.+|.+-|+++|+++|+
T Consensus 95 ~~~p~y~~~~~~~~~~~~~~~~~v~~~d~-----~d~~~l~~ai~~~------tklV~l~~p~NPtG~~~dl~~I~~la~ 163 (382)
T TIGR02080 95 APHDCYGGTYRLLNALAKKGCFRVLFVDQ-----GDEQALRAALAQK------PKLVLIETPSNPLLRVVDIAKICHLAK 163 (382)
T ss_pred EcCCCcHHHHHHHHHHHhhcCeEEEEECC-----CCHHHHHHhcCcC------ceEEEEECCCCCCCEecCHHHHHHHHH
Confidence 7777776544332 223455555432 3789999988653 347888889999999999999999999
Q ss_pred hcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcC
Q psy13453 712 EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD 759 (764)
Q Consensus 712 ~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~ 759 (764)
++|+++.||.+|+.+....+ .. . .+|-+..++|||++.+.+
T Consensus 164 ~~g~~vvvD~a~~~~~~~~p-l~---~---gaDivv~S~sK~l~G~~~ 204 (382)
T TIGR02080 164 AVGAVVVVDNTFLSPALQNP-LA---L---GADLVLHSCTKYLNGHSD 204 (382)
T ss_pred HcCCEEEEECCCcccccCCc-hh---h---CCCEEEeecceeccCCCC
Confidence 99999999999976543222 11 1 359999999999987755
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.1e-07 Score=101.03 Aligned_cols=212 Identities=12% Similarity=0.002 Sum_probs=142.0
Q ss_pred eeeeHH----HHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----
Q psy13453 20 LIYESF----KATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS----- 90 (764)
Q Consensus 20 ~~YSv~----KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~----- 90 (764)
-|+|.. .+++..|+.. +.||.+.++.+|+++++++|+++ +-+++-|.-.+.+|...|+++|++
T Consensus 97 ~~~s~~~~~~~~~~~~g~~v---~~i~~~~~~~~~~~~~~~~l~~~-----~~lv~~~~~~~~tG~~~pi~~I~~~~~~~ 168 (371)
T PF00266_consen 97 EHPSNRYPWEEIAKRKGAEV---RVIPADPGGSLDLEDLEEALNPD-----TRLVSISHVENSTGVRNPIEEIAKLAHEY 168 (371)
T ss_dssp SHHHHHHHHHHHHHHTTEEE---EEEEEGTTSSCSHHHHHHHHHTT-----ESEEEEESBETTTTBBSSHHHHHHHHHHT
T ss_pred cccccccccccccccchhhh---ccccccccchhhhhhhhhhhccc-----cceEEeecccccccEEeeeceehhhhhcc
Confidence 456655 5566778776 89999999999999999999753 235568888899999999999996
Q ss_pred CCCceecccc--------------------ccccc-----eeeeecCCCccccc--cccccc-------------cCCcc
Q psy13453 91 NGPLKVGGVL--------------------RRVYS-----SCLVPRGQKSLRTT--VLFHFL-------------FQHWQ 130 (764)
Q Consensus 91 ~~wlHVDa~l--------------------~~~y~-----s~ll~rd~~~l~~~--~s~~~d-------------~~d~t 130 (764)
+++++|||.. .|+++ ++++++++. +... ...... -..+.
T Consensus 169 ~~~~~vD~~~~~g~~~id~~~~~~D~~~~s~~Kl~gp~G~g~l~v~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 247 (371)
T PF00266_consen 169 GALLVVDAAQSAGCVPIDLDELGADFLVFSSHKLGGPPGLGFLYVRPEA-IERLRPAKPGGGYLDFPSLQEYGLADDARR 247 (371)
T ss_dssp TSEEEEE-TTTTTTSS--TTTTTESEEEEESTSTTSSSTEEEEEEEHHH-HHHHHTSSSSSSTTTHHHHHHHCHHSTTTG
T ss_pred CCceeEechhccccccccccccccceeeecccccCCCCchhhheehhhh-hhccccccccccccccccchhccccccccc
Confidence 8899999942 12221 355555411 1110 000000 01112
Q ss_pred cC-CCCccc-HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCC----CCceeEEEEeecccccccccc
Q psy13453 131 IP-LGRRFR-ALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCP----PSMGLVCFRLKVRFWDKLDNL 204 (764)
Q Consensus 131 le-~SRr~~-ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~----P~l~iV~Fry~P~~~~~~~~~ 204 (764)
++ |+.... .+.+..+++.+-..|..++-++..++++++.+.|++.++++++++ ...++++|.+..
T Consensus 248 ~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~--------- 318 (371)
T PF00266_consen 248 FEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEELPGIEVLGPDDEPRRPSIVSFNLPG--------- 318 (371)
T ss_dssp SSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTEEEEEETT---------
T ss_pred ccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcCCceeEeeecccccccceEEEeecC---------
Confidence 22 233222 246677888888899999999999999999999999999999772 346789998731
Q ss_pred ccCccCCccHHHHHHHHHHHhcCcEEEEeceeC--------CeeEEEEeccCCCCCHHHHHHH
Q psy13453 205 FGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQ--------DRLFMRFAICSSQTEESDVQLG 259 (764)
Q Consensus 205 ~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~--------g~~~LRi~v~np~Tt~e~i~~~ 259 (764)
.+. ..+.+.|.++|.......... -..++|++ .++.+|++||++|
T Consensus 319 -------~~~--~~~~~~L~~~~I~~~~G~~~~~~~~~~~~~~~~iRvS-~~~~nt~~dv~~l 371 (371)
T PF00266_consen 319 -------SDA--DDVVKYLEERGIAVSTGSACAGPSLDILGMGGVIRVS-LHYYNTEEDVDRL 371 (371)
T ss_dssp -------SSH--HHHHHHHHHHTEEEEESTTTCHHHHHHHHTTTEEEEE--GTTSSHHHHHHH
T ss_pred -------CCH--HHHHHHHhhcCEEEeccCcccHHHHHHhCCCCEEEEe-ccCCCCHHHHhhC
Confidence 111 578888888876444311111 12689997 7777889999875
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=98.62 E-value=2e-06 Score=95.87 Aligned_cols=229 Identities=9% Similarity=0.007 Sum_probs=139.0
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCC--CCCcccHHHHHHHHHHHhhCC-CCc-EEEEeeCCcccccccCchhhhc-----
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLP--DSEWLAYLTLRTIYESFRKSF-LCP-MCSGYCGRTLHQDIQSLNAPVS----- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd--~~~rmD~~aLe~~I~~~~~~G-~~p-~~VatAGTT~~G~iDpi~~ia~----- 90 (764)
.|||...+++..|... +.+|.+ +++++|+++|+++|++.+..+ ..+ +++-+.++.++|.+.|++++++
T Consensus 99 ~h~s~~~~~~~~g~~~---~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~~ 175 (370)
T TIGR02539 99 AHYTSYVAAERAGLNV---KEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCREK 175 (370)
T ss_pred ccHHHHHHHHHcCCEE---EEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHHHHc
Confidence 6899999999999877 889986 468999999999997643211 123 4456778899999999999886
Q ss_pred CCCceecccccccc------------------------c--eeeeecCCCccccc--cccccccCCc-ccCCCC-cccHH
Q psy13453 91 NGPLKVGGVLRRVY------------------------S--SCLVPRGQKSLRTT--VLFHFLFQHW-QIPLGR-RFRAL 140 (764)
Q Consensus 91 ~~wlHVDa~l~~~y------------------------~--s~ll~rd~~~l~~~--~s~~~d~~d~-tle~SR-r~~AL 140 (764)
+.+++||+++.... + +|+..+. +..... ....+++... .+.++. ...+.
T Consensus 176 ~~~livDea~~~g~~~~~~~~~~~di~v~s~sK~~~~~g~~G~l~~~~-~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (370)
T TIGR02539 176 GVPLLLNCAYTVGRMPVSAKEIGADFIVGSGHKSMAASGPCGVLGMSE-EWEDIVLRKSRYSPVKEVELLGCTSRGAPIV 254 (370)
T ss_pred CCeEEEECccccCCcCCCHHHcCCCEEEeeCcccccCCCCEEEEEECH-HHHhhhcccccCCccceeeeecccccccHHH
Confidence 88999999642110 0 1222111 000000 0000001110 011122 22333
Q ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe--CCCCceeEEEEeeccccccccccccCccCCccHHHHH
Q psy13453 141 KLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELV--CPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKA 218 (764)
Q Consensus 141 klWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell--~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~ 218 (764)
.+++++... ..+.+..++.++.+++|++.|++. +|+++ .++..+++.|+.. ..... ..+.++-...
T Consensus 255 ~~~~al~~~--~~~l~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~s~t~~v~~~~~--~~~~~-------~~~~~~~~~~ 322 (370)
T TIGR02539 255 TMMASFPHV--VERVKRWDEEVKKTRWFVAELEDI-GFIQLGQKPKEHDLVKFETP--GFHEI-------AQKHKRRGYF 322 (370)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhC-CcEEEccCCCcCceEEEECC--chhHH-------hhhhccccHH
Confidence 445555322 334455566778889999999987 78875 3677888888642 11000 0000111257
Q ss_pred HHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 219 VYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 219 L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
+.++|.++|...+.. ....++|++++ ..++++++.+++.|+++.++
T Consensus 323 ~~~~L~e~GI~~ir~---~~~~~iRis~~--~~t~e~i~~l~~~L~~~~~~ 368 (370)
T TIGR02539 323 LYEELKKRGIHGIRS---GQTKYFKLSVY--GLTKEQVEYVVDSFEEIVEE 368 (370)
T ss_pred HHHHHHhCCCccccC---CcceEEEEEec--CCCHHHHHHHHHHHHHHHHh
Confidence 889999999741221 22358999873 34899999999999887644
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.4e-06 Score=98.03 Aligned_cols=157 Identities=13% Similarity=0.087 Sum_probs=103.6
Q ss_pred HHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHH
Q psy13453 566 LVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVE 645 (764)
Q Consensus 566 ~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~ 645 (764)
++-+.+++++|.++ .++.++|+.+|+.++.+. .. +...|++++..|.|+.
T Consensus 47 ~LE~~lA~~~g~e~-----------al~~~sG~~a~~~~i~~l----~~---------------~GD~Vl~~~~~h~s~~ 96 (392)
T PLN03227 47 ELEQCMAEFLGTES-----------AILYSDGASTTSSTVAAF----AK---------------RGDLLVVDRGVNEALL 96 (392)
T ss_pred HHHHHHHHHhCCCc-----------EEEecCcHHHHHHHHHHh----CC---------------CCCEEEEeccccHHHH
Confidence 34446677777653 467777788887655542 11 1236889999999999
Q ss_pred HHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhh--------cCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEE
Q psy13453 646 KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLA--------KGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWL 717 (764)
Q Consensus 646 kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~--------~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwL 717 (764)
.++.+.+.+++.++.+ |++++++.++.... ....+.+|+.-.-.+..|.+-|+++|.++|++||+++
T Consensus 97 ~~~~l~~~~~~~~~~~-----d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~l~~i~~l~~~~g~~l 171 (392)
T PLN03227 97 VGVSLSRANVRWFRHN-----DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRL 171 (392)
T ss_pred HHHHHcCCeEEEeCCC-----CHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccCHHHHHHHHHHcCCEE
Confidence 9888888777666543 34555554433221 1123455665555667899999999999999999999
Q ss_pred EEeccccccccccch--hhhh---hcCCCcccEEEEcCCccCCCCcC
Q psy13453 718 HVDAAYAGSALLLPE--YAHL---KRGLEYVDSFDFNTHKWLLVNFD 759 (764)
Q Consensus 718 HVDaA~Gg~~l~~~~--~r~~---l~gie~aDSit~d~HK~l~~P~~ 759 (764)
++|.+|+.+.+ .+. .... +.....+|-++.+.+|.++ |.+
T Consensus 172 ivDe~~~~g~~-g~~G~g~~~~~g~~p~~~~Div~~slsk~~g-~~g 216 (392)
T PLN03227 172 ILDESFSFGTL-GKSGRGSLEHAGLKPMVHAEIVTFSLENAFG-SVG 216 (392)
T ss_pred EEECccccccc-CCCCCcHHHHcCCCCCCCceEEEeechhhhh-ccC
Confidence 99999983322 111 1111 1223457999999999876 443
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.2e-06 Score=99.19 Aligned_cols=150 Identities=15% Similarity=0.138 Sum_probs=111.4
Q ss_pred cccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCce
Q psy13453 553 SWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKL 632 (764)
Q Consensus 553 ~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~ 632 (764)
.|..+.....+-+.+.+|+.+..|++-+ ....++|+|++++...++.+... . ++.
T Consensus 102 ~Y~~~~G~~~LR~aia~~~~~~~g~~~~-------~~~I~it~Ga~~al~~~~~~l~~---~---------------pGd 156 (407)
T PLN02368 102 AYSDSRGLPGVRKEVAEFIERRDGYPSD-------PELIFLTDGASKGVMQILNAVIR---G---------------EKD 156 (407)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCC-------hhhEEEcccHHHHHHHHHHHHcC---C---------------CCC
Confidence 4544445567888888999888786432 23688999999987666654310 0 112
Q ss_pred EEEecCCcchhHHHHHHhCCCceEEEecCC--CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccHHHHH
Q psy13453 633 VAYTSDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLEELG 707 (764)
Q Consensus 633 vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~--~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~eIa 707 (764)
.|++.+=+.......+...|.+++.||+++ ++.+|+++|++.+++...++..+-+|+.+..++.||.+ +.+++|+
T Consensus 157 ~Vli~~P~Y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~ 236 (407)
T PLN02368 157 GVLVPVPQYPLYSATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREIL 236 (407)
T ss_pred EEEEeCCCCccHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHH
Confidence 466667777778888899999999999874 47899999999998654444445677778889999988 5667778
Q ss_pred HHHHhcCCEEEEeccccccc
Q psy13453 708 PICQEYNIWLHVDAAYAGSA 727 (764)
Q Consensus 708 ~i~~~~glwLHVDaA~Gg~~ 727 (764)
++|++||+|+..|-+|+-..
T Consensus 237 ~~a~~~~~~II~DE~Y~~l~ 256 (407)
T PLN02368 237 KFCYQERLVLLGDEVYQQNI 256 (407)
T ss_pred HHHHHcCCEEEEEccccccc
Confidence 88999999999999998754
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.9e-07 Score=97.09 Aligned_cols=151 Identities=15% Similarity=0.011 Sum_probs=108.6
Q ss_pred HHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHH
Q psy13453 566 LVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVE 645 (764)
Q Consensus 566 ~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~ 645 (764)
++.+++++.++.+++ ..++|+|+++++.+++.+..+ ++..|++.+-++....
T Consensus 64 ~lr~aia~~~~~~~~---------~I~it~G~~~al~~~~~~l~~-------------------~gd~vlv~~P~y~~~~ 115 (353)
T PRK05387 64 ALRQAIAAYYGLDPE---------QVFVGNGSDEVLAHAFLAFFN-------------------HDRPLLFPDITYSFYP 115 (353)
T ss_pred HHHHHHHHHhCCCHH---------HEEEcCCHHHHHHHHHHHhcC-------------------CCCEEEEeCCCHHHHH
Confidence 567777888887653 689999999998776654311 1124666766666666
Q ss_pred HHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhc-CCEEEEecccc
Q psy13453 646 KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEY-NIWLHVDAAYA 724 (764)
Q Consensus 646 kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~-glwLHVDaA~G 724 (764)
..+...|++++.+|.++++.+|+++|++ . ..+|+.+..++.||.+-+.+++.++++.+ ++|+++|.+|.
T Consensus 116 ~~~~~~g~~~~~v~~~~~~~~d~~~l~~----~------~~~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~ 185 (353)
T PRK05387 116 VYAGLYGIPYEEIPLDDDFSIDVEDYLR----P------NGGIIFPNPNAPTGIALPLAEIERILAANPDSVVVIDEAYV 185 (353)
T ss_pred HHHHHcCCEEEEeecCCCCCCCHHHHHh----c------CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCcEEEEeCccc
Confidence 6688899999999999889999999863 1 12677788899999999999999999886 99999999985
Q ss_pred ccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 725 GSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 725 g~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
-+. ...........++ .-+..++.|.++.|
T Consensus 186 ~~~--~~~~~~~~~~~~~-~i~~~S~SK~~~~~ 215 (353)
T PRK05387 186 DFG--GESAIPLIDRYPN-LLVVQTFSKSRSLA 215 (353)
T ss_pred ccC--CcchHHHHhhCCC-EEEEEehhHhhcch
Confidence 421 1111111111122 46777999988755
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.8e-07 Score=99.74 Aligned_cols=140 Identities=13% Similarity=0.094 Sum_probs=100.8
Q ss_pred cccCCchHHHHHHHHHHHHHHHc--CCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccC
Q psy13453 553 SWLSSPACTELEVLVMNWLGKAL--GLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRN 630 (764)
Q Consensus 553 ~~~~sp~~t~lE~~v~~~la~ll--G~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~ 630 (764)
.|........+-+.+.+|+...- +.++ ...++|+|+++++..++.+. .. +
T Consensus 67 ~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~---------~~i~~t~G~~~~l~~~~~~~----~~---------------~ 118 (404)
T PRK09265 67 GYSDSKGLFSARKAIMQYYQQKGIPDVDV---------DDIYIGNGVSELIVMAMQAL----LN---------------N 118 (404)
T ss_pred CCCCCCCcHHHHHHHHHHHhccCCCCCCc---------ccEEEeCChHHHHHHHHHHh----CC---------------C
Confidence 34433333455555555554321 3333 35788999999876665432 11 1
Q ss_pred ceEEEecCCcchhHHHHHHhCCCceEEEecCC--CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc---HHH
Q psy13453 631 KLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN---LEE 705 (764)
Q Consensus 631 ~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~--~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp---l~e 705 (764)
+..|++++-+|.....++...|.+++.+++|. ++.+|+++|++.+.+. +-+|+.+..++.+|.+-+ +++
T Consensus 119 gd~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~P~NPtG~~~~~~~~~~ 192 (404)
T PRK09265 119 GDEVLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKITPR------TKAIVIINPNNPTGAVYSKELLEE 192 (404)
T ss_pred CCEEEEeCCCCcChHHHHHHcCCEEEEEecccccCCCCCHHHHHHhcccc------ceEEEEECCCCCCCcCCCHHHHHH
Confidence 22477888999999999988999988888863 4679999999987543 336777788999999877 889
Q ss_pred HHHHHHhcCCEEEEecccccc
Q psy13453 706 LGPICQEYNIWLHVDAAYAGS 726 (764)
Q Consensus 706 Ia~i~~~~glwLHVDaA~Gg~ 726 (764)
|+++|++||+++++|.+|+..
T Consensus 193 i~~~a~~~~~~ii~De~y~~~ 213 (404)
T PRK09265 193 IVEIARQHNLIIFADEIYDKI 213 (404)
T ss_pred HHHHHHHCCCEEEEehhhhhc
Confidence 999999999999999999864
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-06 Score=96.79 Aligned_cols=186 Identities=12% Similarity=0.022 Sum_probs=120.9
Q ss_pred HHHHHHhhccc-CccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCC-cEEEeCChHHHHHHHHHHHHHHHhhhhc
Q psy13453 540 GDMLSGAFGLI-GFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPG-GGIIQSTASEATLVSILVAKRKMINHWQ 617 (764)
Q Consensus 540 ad~l~~~lN~n-~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~-~GvfTsGgTeANl~Al~aAR~~~~~~~~ 617 (764)
.+.+...++.. ...|...+....+.+.+.+|+.+..|.+-+ .. ..++|+|++++...++.+. ..
T Consensus 51 ~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~-------~~~~i~it~G~~~~l~~~~~~~----~~--- 116 (389)
T PRK08068 51 VEALQEAAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLD-------PETEVAILFGGKAGLVELPQCL----MN--- 116 (389)
T ss_pred HHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCC-------CCccEEEcCCcHHHHHHHHHHh----CC---
Confidence 44444444432 223434455677888888888877776432 12 4678999998876654321 11
Q ss_pred cCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCC--CCcccHHHHHHHHHHhhhcCCCceEEEEeeccC
Q psy13453 618 SKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTT 695 (764)
Q Consensus 618 ~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~--~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT 695 (764)
+...|++.+-++.....++...|++++.+|+++ .+.+|+++|++.+.+. +-+|+.+..++
T Consensus 117 ------------~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~------~~~v~l~~P~N 178 (389)
T PRK08068 117 ------------PGDTILVPDPGYPDYLSGVALARAQFETMPLIAENNFLPDYTKIPEEVAEK------AKLMYLNYPNN 178 (389)
T ss_pred ------------CCCEEEEcCCCCcchHHHHHhcCCEEEEeecccccCCCCCHHHHHHhcccc------ceEEEEECCCC
Confidence 122577788888888888999999999999974 3578999999888542 33666667889
Q ss_pred CccccccH---HHHHHHHHhcCCEEEEeccccccccccchhhhhhc--CCCcccEEEEcCCccCCCC
Q psy13453 696 GTCAFDNL---EELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKR--GLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 696 ~~GaiDpl---~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~--gie~aDSit~d~HK~l~~P 757 (764)
.||.+=+. ++|.++|++|++|+++|-||+-...-.......+. +...-.-+.-++-|.++.|
T Consensus 179 PTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~ 245 (389)
T PRK08068 179 PTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMA 245 (389)
T ss_pred CCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCc
Confidence 99998655 57777899999999999999753221101001111 1111123556889988654
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.7e-06 Score=95.80 Aligned_cols=198 Identities=16% Similarity=0.045 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCccccccCCCCChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccc
Q psy13453 502 WRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEF 581 (764)
Q Consensus 502 ~~~il~~l~~~i~~~~~~~~~P~~~~~~~~~~~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~ 581 (764)
.++.+..+++.+..+-... --.|+|.-.. +.....+.+.+..+ + ....+.+++.+++++++|.+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~-~~~ylgl~~~-~~~~~~~~~~~~~~----~-------g~~~~~~~Le~~lA~~~g~~~e- 72 (346)
T TIGR03576 7 REKALEIIREKISRGGRDS-LYDLTGLAGG-FKIDEEDLELLETY----V-------GPAIFEEKVQELGREHLGGPEE- 72 (346)
T ss_pred HHHHHHHHHHHHhccCCcc-ccccccCCCC-hhHHHHHHHHHHHh----c-------CCHHHHHHHHHHHHHHcCCCcc-
Confidence 4677788888776553321 1134444322 22222233333332 1 2347888888999999999653
Q ss_pred cCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE--ecCCcchhHHHHHHhCCCceEEEe
Q psy13453 582 LNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY--TSDQSNSSVEKSAIIGDVPVRQLR 659 (764)
Q Consensus 582 ~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~--~S~~aH~Sv~kAa~~lGl~v~~Vp 659 (764)
..++++||+++|+.++.+..+ . ++.+++ .....|.++..++++.|.++...
T Consensus 73 --------~ilv~~gg~~a~~~~~~al~~----~--------------gd~Vli~~~d~p~~~s~~~~~~l~ga~~~~~- 125 (346)
T TIGR03576 73 --------KILVFNRTSSAILATILALEP----P--------------GRKVVHYLPEKPAHPSIPRSCKLAGAEYFES- 125 (346)
T ss_pred --------eEEEECCHHHHHHHHHHHhCC----C--------------CCEEEECCCCCCCchhHHHHHHHcCCEEecc-
Confidence 578999999999887764321 0 122333 22569999999999999865322
Q ss_pred cCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccHHHHHHHHHhcCCEEEEecccccccccc-chhhh
Q psy13453 660 SDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLEELGPICQEYNIWLHVDAAYAGSALLL-PEYAH 735 (764)
Q Consensus 660 ~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~-~~~r~ 735 (764)
.++++|+ .. . .+-+|+.| |++..|.+ .||++|+++|++||+|+.||-||+.+.... .....
T Consensus 126 ------~~l~~l~----~~-~---~~~lIiit-g~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~~ 190 (346)
T TIGR03576 126 ------DELSELK----KI-D---GTSLVVIT-GSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPPA 190 (346)
T ss_pred ------CCHHHHh----hC-c---CceEEEEE-CCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCCCH
Confidence 1344432 11 1 13345554 56778888 899999999999999999999999764321 11000
Q ss_pred hhcCCCcccEEEEcCCccCCCCc
Q psy13453 736 LKRGLEYVDSFDFNTHKWLLVNF 758 (764)
Q Consensus 736 ~l~gie~aDSit~d~HK~l~~P~ 758 (764)
.-. .+|-+..+++|++..+.
T Consensus 191 ~~~---~~divv~s~SKalaG~r 210 (346)
T TIGR03576 191 LDL---GADLVVTSTDKLMDGPR 210 (346)
T ss_pred HHc---CCcEEEeccchhccccc
Confidence 011 25888899999774443
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=98.60 E-value=2e-06 Score=100.37 Aligned_cols=152 Identities=15% Similarity=0.137 Sum_probs=115.3
Q ss_pred CccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccC
Q psy13453 551 GFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRN 630 (764)
Q Consensus 551 ~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~ 630 (764)
...|..+.....+-+.+.+|+.+..|++-+ ....++|+|+++++.+++.+... + +
T Consensus 161 ~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~-------pe~I~iT~Ga~~ai~~~~~~l~~---~---------------~ 215 (534)
T PLN02231 161 TGAYSHSQGIKGLRDAIAAGIEARDGFPAD-------PNDIFLTDGASPAVHMMMQLLIR---S---------------E 215 (534)
T ss_pred ccCcCCCCCcHHHHHHHHHHHHhccCCCCC-------cccEEEeCCHHHHHHHHHHHhcc---C---------------C
Confidence 345666667778888888888887776542 24688999999998776654321 0 1
Q ss_pred ceEEEecCCcchhHHHHHHhCCCceEEEecCC--CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccHHH
Q psy13453 631 KLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLEE 705 (764)
Q Consensus 631 ~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~--~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~e 705 (764)
+..|++..=+......++...|..++.+|.++ ++.+|+++|++++++...++..+-+|+.+..++.||.+ +.+++
T Consensus 216 gd~Vli~~P~Y~~y~~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~ 295 (534)
T PLN02231 216 KDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRD 295 (534)
T ss_pred CCEEEEeCCCChhHHHHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHH
Confidence 12356666667777778888999999999985 36899999999998766666556566667778899988 57788
Q ss_pred HHHHHHhcCCEEEEeccccccc
Q psy13453 706 LGPICQEYNIWLHVDAAYAGSA 727 (764)
Q Consensus 706 Ia~i~~~~glwLHVDaA~Gg~~ 727 (764)
|+++|++||+|+..|-+|.-..
T Consensus 296 Iv~~a~~~~l~lI~DEvY~~l~ 317 (534)
T PLN02231 296 IVEFCKQEGLVLLADEVYQENV 317 (534)
T ss_pred HHHHHHHcCCEEEEEccchhcc
Confidence 8999999999999999998753
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.8e-07 Score=103.18 Aligned_cols=139 Identities=11% Similarity=0.046 Sum_probs=101.5
Q ss_pred ccCCchHHHHHHHHHHHHHHHcC--CCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCc
Q psy13453 554 WLSSPACTELEVLVMNWLGKALG--LPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631 (764)
Q Consensus 554 ~~~sp~~t~lE~~v~~~la~llG--~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~ 631 (764)
|..+.....+-+.+.+++.+..+ +++ ...++|+|++++...++.+. .. ++
T Consensus 181 Y~~~~G~~~lReaia~~~~~~~~~~~~~---------~~I~it~G~~eal~~~~~~l----~~---------------~G 232 (517)
T PRK13355 181 YSDSKGLFSARKAIMQYAQLKGLPNVDV---------DDIYTGNGVSELINLSMSAL----LD---------------DG 232 (517)
T ss_pred CCCCcChHHHHHHHHHHHHhcCCCCCCh---------hHEEEeCcHHHHHHHHHHHh----CC---------------CC
Confidence 33333344555555566644322 222 36789999999877766532 11 12
Q ss_pred eEEEecCCcchhHHHHHHhCCCceEEEecCC--CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc---HHHH
Q psy13453 632 LVAYTSDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN---LEEL 706 (764)
Q Consensus 632 ~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~--~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp---l~eI 706 (764)
..|+++.-++.....++...|.+++.+++++ ++.+|+++|++++.+. +-+|+.+..++.||.+-+ +++|
T Consensus 233 d~Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~------~k~i~i~nP~NPTG~v~~~~~l~~i 306 (517)
T PRK13355 233 DEVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKITSR------TKAIVIINPNNPTGALYPREVLQQI 306 (517)
T ss_pred CEEEEcCCCCcCHHHHHHHCCCEEEEeecCcccCCCCCHHHHHHhcCcC------ceEEEEECCCCCCCcCcCHHHHHHH
Confidence 2477788888888888999999999999874 4789999999988653 337777788999999866 8889
Q ss_pred HHHHHhcCCEEEEecccccc
Q psy13453 707 GPICQEYNIWLHVDAAYAGS 726 (764)
Q Consensus 707 a~i~~~~glwLHVDaA~Gg~ 726 (764)
+++|++|++|+++|.+|.-.
T Consensus 307 ~~~a~~~~~~ii~DE~Y~~~ 326 (517)
T PRK13355 307 VDIAREHQLIIFSDEIYDRL 326 (517)
T ss_pred HHHHHHcCcEEEEehhhhhh
Confidence 99999999999999999854
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=2e-06 Score=96.09 Aligned_cols=168 Identities=17% Similarity=0.104 Sum_probs=111.3
Q ss_pred hHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecC
Q psy13453 559 ACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSD 638 (764)
Q Consensus 559 ~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~ 638 (764)
....+-+.+.+|+.+.+|.+-+ .....++|+|++++...++.+. .. +...|++.+
T Consensus 70 G~~~lr~aia~~~~~~~g~~~~------~~~~ii~t~G~~~~i~~~~~~~----~~---------------~gd~Vl~~~ 124 (385)
T PRK09276 70 GMLEFRKAVADWYKRRFGVELD------PETEVISLIGSKEGIAHIPLAF----VN---------------PGDVVLVPD 124 (385)
T ss_pred CcHHHHHHHHHHHHHHhCCCCC------CCCcEEEccCcHHHHHHHHHHh----CC---------------CCCEEEEcC
Confidence 3456777788888877776432 0113677899999876655432 11 122466677
Q ss_pred CcchhHHHHHHhCCCceEEEecCC--CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc---HHHHHHHHHhc
Q psy13453 639 QSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN---LEELGPICQEY 713 (764)
Q Consensus 639 ~aH~Sv~kAa~~lGl~v~~Vp~d~--~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp---l~eIa~i~~~~ 713 (764)
-+......+++..|.+++.+|.+. .+.+|++++++.+.+. +-+|+.+..++.||.+-+ +++|+++|++|
T Consensus 125 P~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~ 198 (385)
T PRK09276 125 PGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVAKK------AKLMFINYPNNPTGAVADLEFFEEVVDFAKKY 198 (385)
T ss_pred CCCcChHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhcccc------ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHC
Confidence 777777888889999999999864 3568999998877542 336777778899999865 68888899999
Q ss_pred CCEEEEeccccccccccchhhhh--hcCCCcccEEEEcCCccCCCC
Q psy13453 714 NIWLHVDAAYAGSALLLPEYAHL--KRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 714 glwLHVDaA~Gg~~l~~~~~r~~--l~gie~aDSit~d~HK~l~~P 757 (764)
|+|+++|-+|+....-....... +.+...-.-..-++-|.++.|
T Consensus 199 ~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 244 (385)
T PRK09276 199 DIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMT 244 (385)
T ss_pred CcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCc
Confidence 99999999998643211000110 111111123456788988644
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.8e-06 Score=95.67 Aligned_cols=225 Identities=10% Similarity=0.037 Sum_probs=142.5
Q ss_pred eeeH--HHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCC
Q psy13453 21 IYES--FKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGP 93 (764)
Q Consensus 21 ~YSv--~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~w 93 (764)
+|+. .+++...|+.. +.||+++++.+|+++|+++|++.. +.-++..+...+++|.+-|++++++ +++
T Consensus 90 ~~~~~~~~~~~~~g~~~---~~i~~~~~~~~d~~~l~~~l~~~~---~~~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~~ 163 (368)
T PRK13479 90 AYGARIAQIAEYLGIAH---VVLDTGEDEPPDAAEVEAALAADP---RITHVALVHCETTTGILNPLDEIAAVAKRHGKR 163 (368)
T ss_pred chHHHHHHHHHHcCCcE---EEEECCCCCCCCHHHHHHHHHhCC---CCcEEEEEcccCccccccCHHHHHHHHHHcCCE
Confidence 4554 48889999877 999999888999999999997532 1123446778899999999999886 789
Q ss_pred ceecccc--------------------ccc--c---c-eeeeecCCC--ccccc-cccccccC---Cc-----ccCCCC-
Q psy13453 94 LKVGGVL--------------------RRV--Y---S-SCLVPRGQK--SLRTT-VLFHFLFQ---HW-----QIPLGR- 135 (764)
Q Consensus 94 lHVDa~l--------------------~~~--y---~-s~ll~rd~~--~l~~~-~s~~~d~~---d~-----tle~SR- 135 (764)
++||+.. .++ + + ++++.+.+. .+... .+...|+. ++ ....+.
T Consensus 164 livDa~~~~g~~~~~~~~~~~d~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 243 (368)
T PRK13479 164 LIVDAMSSFGAIPIDIAELGIDALISSANKCIEGVPGFGFVIARRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPP 243 (368)
T ss_pred EEEEcccccCCccccccccCceEEEecCccccccCCCceEEEECHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCc
Confidence 9999842 111 0 1 233332210 00000 00000000 00 000011
Q ss_pred cccHHHHHHHHHHccHHH-HHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC--c-eeEEEEeeccccccccccccCccCC
Q psy13453 136 RFRALKLWMTLRSYGLKG-LQAYLRKHISLAKKFADLVEQDDRFELVCPPS--M-GLVCFRLKVRFWDKLDNLFGTISFG 211 (764)
Q Consensus 136 r~~ALklWatL~~lG~eG-y~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~--l-~iV~Fry~P~~~~~~~~~~~~~~~~ 211 (764)
......+.+++..+-.+| +.+++++..++++++.+.+++. +++++.++. . .+++|++.... .
T Consensus 244 ~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-------------~ 309 (368)
T PRK13479 244 THVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRAL-GFEPLLDAEIQSPIIVTFHAPADP-------------A 309 (368)
T ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-CCcccCCchhcCceEEEEECCCCC-------------C
Confidence 122346678888776664 7888899999999999999987 888876543 2 25777643100 0
Q ss_pred ccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 212 DNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 212 ~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
.+ ..++.++|.++|..+... .......+|++... .+++++++.+++.|+++.++
T Consensus 310 ~~--~~~l~~~L~~~gi~v~~g-~~~~~~~iRis~~~-~~t~edi~~~l~~L~~~l~~ 363 (368)
T PRK13479 310 YD--FKEFYERLKEQGFVIYPG-KLTQVDTFRIGCIG-DVDAADIRRLVAAIAEALYW 363 (368)
T ss_pred cC--HHHHHHHHHHCCEEEecC-CCCCCCEEEEecCC-CCCHHHHHHHHHHHHHHHHH
Confidence 11 247889999999865332 11223578996543 56799999999999887654
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.4e-06 Score=97.92 Aligned_cols=141 Identities=13% Similarity=0.075 Sum_probs=98.7
Q ss_pred ccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceE
Q psy13453 554 WLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633 (764)
Q Consensus 554 ~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~v 633 (764)
|...+...++.+.+.+++.+ .|.+- .....++|+|+++++..++.+.. . ++..
T Consensus 69 Y~~~~g~~~lr~aia~~~~~-~~~~~-------~~~~i~~t~G~~~al~~~~~~l~----~---------------~gd~ 121 (401)
T TIGR01264 69 YAPTVGALSAREAIASYYHN-PDGPI-------EADDVVLCSGCSHAIEMCIAALA----N---------------AGQN 121 (401)
T ss_pred CCCCCCCHHHHHHHHHHHhh-cCCCC-------CHHHEEECcChHHHHHHHHHHhC----C---------------CCCE
Confidence 33334445566666666654 23221 11357799999999877665331 1 1113
Q ss_pred EEecCCcchhHHHHHHhCCCceEEEecC--CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccHHHHHH
Q psy13453 634 AYTSDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLEELGP 708 (764)
Q Consensus 634 i~~S~~aH~Sv~kAa~~lGl~v~~Vp~d--~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~eIa~ 708 (764)
|+++.-++......+...|+.++.++++ +++.+|+++|++.+.+. +-+|+.+..++.+|.+ +++++|++
T Consensus 122 v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~~~~p~NPtG~~~~~~~~~~l~~ 195 (401)
T TIGR01264 122 ILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDEK------TAALIVNNPSNPCGSVFSRQHLEEILA 195 (401)
T ss_pred EEEeCCCChhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHHhccC------ceEEEEcCCCCCCCCCCCHHHHHHHHH
Confidence 5556666666777888999999999886 35789999999887643 2356667788999988 46888999
Q ss_pred HHHhcCCEEEEeccccccc
Q psy13453 709 ICQEYNIWLHVDAAYAGSA 727 (764)
Q Consensus 709 i~~~~glwLHVDaA~Gg~~ 727 (764)
+|+++|+|+++|.+|....
T Consensus 196 ~a~~~~~~ii~De~y~~~~ 214 (401)
T TIGR01264 196 VAERQCLPIIADEIYGDMV 214 (401)
T ss_pred HHHHCCCEEEEEhhhhhhc
Confidence 9999999999999998644
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.2e-06 Score=93.96 Aligned_cols=176 Identities=16% Similarity=0.127 Sum_probs=116.8
Q ss_pred ccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCc
Q psy13453 552 FSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631 (764)
Q Consensus 552 ~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~ 631 (764)
..|.......++.+.+.+|+.+..|++-+ .....++|+|++++....+.+. .. +.
T Consensus 61 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~------~~~~i~~t~G~~~~l~~~~~~~----~~---------------~g 115 (395)
T PRK08175 61 HGYSTSRGIPRLRRAISRWYQDRYDVDID------PESEAIVTIGSKEGLAHLMLAT----LD---------------HG 115 (395)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCCC------CCCcEEEccCcHHHHHHHHHHh----CC---------------CC
Confidence 44544445677888888999888776431 0124788999988865543321 11 12
Q ss_pred eEEEecCCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccH---HHHHH
Q psy13453 632 LVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNL---EELGP 708 (764)
Q Consensus 632 ~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl---~eIa~ 708 (764)
..|++++-++......+...|.+++.||+++++ .++++|++++++.. ..+-+|+.+..++.+|.+-+. ++|++
T Consensus 116 d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~-~~~~~l~~~l~~~~---~~~~~v~i~~p~NPtG~~~~~~~~~~i~~ 191 (395)
T PRK08175 116 DTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGV-DFFNELERAIRESY---PKPKMMILGFPSNPTAQCVELEFFEKVVA 191 (395)
T ss_pred CEEEEcCCCCcchHHHHHHcCCeEEEEecccCC-CcHHHHHHHHhhcc---CCceEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence 247777788887788888899999999997543 46888998886421 124466667778899988665 78999
Q ss_pred HHHhcCCEEEEeccccccccccchhhhhhcCCC-ccc--EEEEcCCccCCCC
Q psy13453 709 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLE-YVD--SFDFNTHKWLLVN 757 (764)
Q Consensus 709 i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie-~aD--Sit~d~HK~l~~P 757 (764)
+|++||+|+++|.+|+.... -......+..+. ..| -++.++-|.++.|
T Consensus 192 ~a~~~~i~ii~De~y~~l~~-~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~p 242 (395)
T PRK08175 192 LAKRYDVLVVHDLAYADIVY-DGWKAPSIMQVPGAKDVAVEFFTLSKSYNMA 242 (395)
T ss_pred HHHHcCcEEEEecchHhhcc-CCCCCcchhcCCCcccCEEEEeeccccccCc
Confidence 99999999999999976432 111001111121 123 3468899998766
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.9e-07 Score=100.26 Aligned_cols=172 Identities=19% Similarity=0.174 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChH-HHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCC
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTAS-EATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQ 639 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgT-eANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~ 639 (764)
..+.+.++.-+.+++|+++. ...+.++.+| |+..+.+.+.| + .++ .+ .|+.|..
T Consensus 55 ~~ltn~l~~d~~~~~G~~~~--------~~~~~vP~atgm~l~l~l~~l~-~-r~~--------------a~-~Viw~ri 109 (389)
T PF05889_consen 55 AKLTNSLVLDALRLAGLRSV--------KSCFVVPMATGMSLTLCLLALR-M-RPK--------------AK-YVIWPRI 109 (389)
T ss_dssp HHHHHHHHHHHHHHTTHTTH--------CEEEEESS-HHHHHHHHHHHHH-H-HCT-----------------EEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCccc--------cceEEEecccccHHHHHHHHHh-c-ccC--------------Cc-eEEEeec
Confidence 34555566666777898753 3456777777 66666777666 2 221 12 4677999
Q ss_pred cchhHHHHHHhCCCceEEEecC---CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc-ccHHHHHHHHHhcCC
Q psy13453 640 SNSSVEKSAIIGDVPVRQLRSD---DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF-DNLEELGPICQEYNI 715 (764)
Q Consensus 640 aH~Sv~kAa~~lGl~v~~Vp~d---~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai-Dpl~eIa~i~~~~gl 715 (764)
.|+|..||+...|++++.||.. +.-..|.+++|++|++. |..+.+.+.|.-+-..+-. |++.+|++||++||+
T Consensus 110 dqkSc~kai~~AGl~~~vV~~~~~~d~l~td~~~ie~~i~~~---G~~~iLcvltttscfapr~~D~i~~IakiC~~~~I 186 (389)
T PF05889_consen 110 DQKSCFKAIERAGLEPVVVENVLEGDELITDLEAIEAKIEEL---GADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDI 186 (389)
T ss_dssp ETHHHHHHHHHTT-EEEEE-EEEETTEEEEHHHHHHHHHHHH---CGGGEEEEEEESSTTTTB----HHHHHHHHHHHT-
T ss_pred cccchHHHHHhcCCeEEEeeccCCCCeeeccHHHHHHHHHHh---CCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCC
Confidence 9999999999999999999863 34467889999998554 5567788888877777766 559999999999999
Q ss_pred EEEEeccccccccccchhhhhhc---CCCcccEEEEcCCccCCCCcCceee
Q psy13453 716 WLHVDAAYAGSALLLPEYAHLKR---GLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 716 wLHVDaA~Gg~~l~~~~~r~~l~---gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
++.|.+|||.-. .+..++++ -..|.|.+.-+.-|-+.+|.|-+++
T Consensus 187 PhlvNnAYgvQ~---~~~~~~i~~a~~~GRvda~vqS~dkNF~VPvGgai~ 234 (389)
T PF05889_consen 187 PHLVNNAYGVQS---SKCMHLIQQAWRVGRVDAFVQSTDKNFMVPVGGAIM 234 (389)
T ss_dssp -EEEEGTTTTT----HHHHHHHHHHHHHSTCSEEEEEHHHHHCEESSHEEE
T ss_pred ceEEccchhhhH---HHHHHHHHHHHhcCCcceeeeecCCCEEecCCCcEE
Confidence 999999999732 11111110 0235677777777777777765443
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.2e-07 Score=99.80 Aligned_cols=151 Identities=16% Similarity=0.075 Sum_probs=98.9
Q ss_pred cCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEE
Q psy13453 555 LSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVA 634 (764)
Q Consensus 555 ~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi 634 (764)
...|...++|+ .+++++|.+. .+++++|++++..++.+. ... ...|
T Consensus 42 ~~~p~~~~L~~----~lA~l~g~~~-----------~v~~~sG~~ai~~~l~al----~~~---------------Gd~V 87 (376)
T PRK06460 42 EANPTVLELTK----KIVELENAEM-----------GVAFSSGMGAISTTALAL----LKP---------------GNSV 87 (376)
T ss_pred CCCccHHHHHH----HHHHHhCCCc-----------EEEeCCHHHHHHHHHHHH----hCC---------------CCEE
Confidence 34566666554 6777777743 355677788776665432 111 1134
Q ss_pred EecCC----cchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHH
Q psy13453 635 YTSDQ----SNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPIC 710 (764)
Q Consensus 635 ~~S~~----aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~ 710 (764)
+++.. +...+.+.++..|+.++.++.++ .+.+++.+++ .+-+|+....++.+|.+-|+++|+++|
T Consensus 88 l~~~~~~~~ty~~~~~~~~~~G~~v~~~~~~~-----~~~l~~~~~~------~tklV~l~sp~NPtG~v~d~~~I~~la 156 (376)
T PRK06460 88 LVHRDMFGRSYRFFTDYLKNWGVNVDASNPGS-----DNIIEKAKSK------RYDVVFVENITNPLLRVVDITELSKVC 156 (376)
T ss_pred EEecCCcCcHHHHHHHHHHhhCcEEEEECCCC-----HHHHHHhcCC------CceEEEEECCCCCCCcccCHHHHHHHH
Confidence 44432 22334566778899988887653 2334433222 245788899999999999999999999
Q ss_pred HhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 711 QEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 711 ~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
+++|++++||.||+...... .... .+|-+..++||+++.+
T Consensus 157 ~~~g~~vivDea~~~~~~~~----~l~~---~~divv~S~sK~l~G~ 196 (376)
T PRK06460 157 KENGSILIVDATFSTPINQK----PLEL---GADIVVHSASKFLAGH 196 (376)
T ss_pred HHcCCEEEEECCcCccccCC----hhhc---CCCEEEeecceeccCC
Confidence 99999999999998642211 1111 3699999999998743
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1e-06 Score=95.30 Aligned_cols=211 Identities=16% Similarity=0.129 Sum_probs=133.4
Q ss_pred HHhhcCCCCCCeEEecCC-CCCcccHHHHHHHHHHHh-hCCCCcEEE-EeeCCcccccccCchhhhc--------CCCce
Q psy13453 27 ATHSLSGTPDQVRLSGLP-DSEWLAYLTLRTIYESFR-KSFLCPMCS-GYCGRTLHQDIQSLNAPVS--------NGPLK 95 (764)
Q Consensus 27 Aa~~LGl~~~~v~~Vpvd-~~~rmD~~aLe~~I~~~~-~~G~~p~~V-atAGTT~~G~iDpi~~ia~--------~~wlH 95 (764)
|..++|=+. ..+.++ ++|+|++++++++|..+- ---.+|++| =|.-| ..|++=|++++.+ ++.+|
T Consensus 92 a~~~~~~~~---~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~t-e~GtVy~l~el~~i~~~~k~~~l~LH 167 (342)
T COG2008 92 APEFFGGGQ---KLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTAT-EGGTVYPLDELEAISAVCKEHGLPLH 167 (342)
T ss_pred cHHHHcCCc---eeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccC-CCceecCHHHHHHHHHHHHHhCCcee
Confidence 445565333 334444 799999999999998621 122567775 44444 8899988888664 99999
Q ss_pred eccc--------cccc------cc---eeeeecCCCccccc-------cccccccC-CcccCCCCcccHHHH-HHHHHHc
Q psy13453 96 VGGV--------LRRV------YS---SCLVPRGQKSLRTT-------VLFHFLFQ-HWQIPLGRRFRALKL-WMTLRSY 149 (764)
Q Consensus 96 VDa~--------l~~~------y~---s~ll~rd~~~l~~~-------~s~~~d~~-d~tle~SRr~~ALkl-WatL~~l 149 (764)
+||+ +... |+ ++-+.|.....-.+ |-....++ ...-++-|..+-+.. |... |
T Consensus 168 mDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK~g~~~~gAiv~gn~~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~--l 245 (342)
T COG2008 168 MDGARLANALVALGVALKTIKSYVDSVSFCLTKGGGAPVGAIVFGNRDFAKRARRWRKRAGGLMRKARFLAAQGLYA--L 245 (342)
T ss_pred echHHHHHHHHHcCCCHHHHHhhCCEEEEecccCCcceeeeEEEcCHHHHHHHHHHHHHhcccHhhhhHHHHHHHHH--H
Confidence 9993 1111 11 11111111111110 00011122 123344454444433 4433 4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcE
Q psy13453 150 GLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVI 229 (764)
Q Consensus 150 G~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~ 229 (764)
..+-++..-+|.-++|++|++.+++.|++++..+|+.|+|-.+.. ....+.+...||.
T Consensus 246 ~~~~~~~~~~Han~mA~~La~~~~~~~G~~~~~~~~tN~vf~~l~----------------------~~~i~~l~~~~~~ 303 (342)
T COG2008 246 EDDVWRLAADHANAMAARLAEGLEAKPGVKLAFPVETNMVFVRLP----------------------ESAIEALRLAGAL 303 (342)
T ss_pred hccHHHHHHHHHHHHHHHHHHhhhhcCCceeccCCcccEEEEECC----------------------hHHHHHHHhhchh
Confidence 455588888999999999999999999999999999998877643 1222677777775
Q ss_pred EEEeceeCCe--eEEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13453 230 YIVKGSFQDR--LFMRFAICSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 230 ~vs~t~l~g~--~~LRi~v~np~Tt~e~i~~~l~~l~~~~ 267 (764)
+... .|.+. ...|+ +|++.|++++|++++..++++.
T Consensus 304 ~~~~-~~~~~~~~~vRf-vts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 304 FYRG-VLIGAHGEIVRF-VTSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred heee-eeccCCCceEEE-EeeccCCHHHHHHHHHHHHHhh
Confidence 4432 23222 47999 7999999999999999998763
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.8e-06 Score=95.66 Aligned_cols=129 Identities=14% Similarity=0.124 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCC
Q psy13453 560 CTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQ 639 (764)
Q Consensus 560 ~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~ 639 (764)
.+....++.+.+++++|. + .+++++|++||..++..++...... ..+.+|+.+..
T Consensus 89 ~~~~~~~l~~~la~~~~~-~-----------~~~~~sG~~a~~~ai~~~~~~~~~~-------------~~~~vi~~~~~ 143 (402)
T PRK07505 89 RSQILKDLEEALSELFGA-S-----------VLTFTSCSAAHLGILPLLASGHLTG-------------GVPPHMVFDKN 143 (402)
T ss_pred hhHHHHHHHHHHHHHhCC-C-----------EEEECChHHHHHHHHHHHHhcccCC-------------CCCCEEEEchh
Confidence 466777888899999876 3 3556677889998988765432111 01236677889
Q ss_pred cchhHHHHH--HhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEE
Q psy13453 640 SNSSVEKSA--IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWL 717 (764)
Q Consensus 640 aH~Sv~kAa--~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwL 717 (764)
.|.|+.... ...+.+++.+|.+ |+++|++++++. +.+++++.+.+.+|.+-|+++|.++|++||++|
T Consensus 144 ~H~s~~~~~~~~~~~~~v~~~~~~-----d~~~l~~~~~~~------~~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~l 212 (402)
T PRK07505 144 AHASLNILKGICADETEVETIDHN-----DLDALEDICKTN------KTVAYVADGVYSMGGIAPVKELLRLQEKYGLFL 212 (402)
T ss_pred hhHhHHhhhhhhhcCCeEEEeCCC-----CHHHHHHHHhcC------CCEEEEEecccccCCcCCHHHHHHHHHHcCCEE
Confidence 999875322 2234567777753 789999888543 236777788889999999999999999999999
Q ss_pred EEecccc
Q psy13453 718 HVDAAYA 724 (764)
Q Consensus 718 HVDaA~G 724 (764)
++|.+|+
T Consensus 213 i~DEa~~ 219 (402)
T PRK07505 213 YIDDAHG 219 (402)
T ss_pred EEECccc
Confidence 9999984
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.5e-06 Score=96.95 Aligned_cols=199 Identities=19% Similarity=0.122 Sum_probs=133.1
Q ss_pred CCCCCCCccccccCCCCChHHHHHHHHHH-hhc--ccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEE
Q psy13453 517 ITHWQSPQFNAYFPTGSSYPSIVGDMLSG-AFG--LIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGII 593 (764)
Q Consensus 517 ~~~~~~P~~~~~~~~~~~~~~~lad~l~~-~lN--~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~Gvf 593 (764)
...|.+-.|++.-..+. ....+.+.+.. ... .........+.-.++|+ .|++++|.+. .++
T Consensus 41 ~~nf~SNdYLGLa~~~~-~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~----~lA~f~g~e~-----------al~ 104 (388)
T COG0156 41 VLNFCSNDYLGLASHPE-LIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEE----ELADFLGAEA-----------ALL 104 (388)
T ss_pred eEeeeccCcccccCCHH-HHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHH----HHHHHhCCCc-----------EEE
Confidence 44577777887765433 22222223332 122 22333445566677776 5677777764 344
Q ss_pred eCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHH
Q psy13453 594 QSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLT 673 (764)
Q Consensus 594 TsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~ 673 (764)
.++|=.||+-.+.+-.. ++.+|+..+..|.|+..++++.+.+++.-+= -|+++||+
T Consensus 105 f~SGy~AN~~~i~~l~~-------------------~~dli~~D~lnHASiidG~rls~a~~~~f~H-----nD~~~Le~ 160 (388)
T COG0156 105 FSSGFVANLGLLSALLK-------------------KGDLIFSDELNHASIIDGIRLSRAEVRRFKH-----NDLDHLEA 160 (388)
T ss_pred EcccchhHHHHHHHhcC-------------------CCcEEEEechhhhhHHHHHHhCCCcEEEecC-----CCHHHHHH
Confidence 45567777665543211 2457899999999999999999888776543 57899999
Q ss_pred HHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhh--cCCC--cccEEEEc
Q psy13453 674 AVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLK--RGLE--YVDSFDFN 749 (764)
Q Consensus 674 ~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l--~gie--~aDSit~d 749 (764)
.+++....+..+.+|+.=.--...|.+-||.+|.++|++|+.||.||-||+.+.+- +.-+... .|++ ..|-++-+
T Consensus 161 ~l~~~~~~~~~~~~IvtegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~G-~~GrG~~e~~g~~~~~vdi~~gT 239 (388)
T COG0156 161 LLEEARENGARRKLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLG-PNGRGLAEHFGLEPEEVDIIVGT 239 (388)
T ss_pred HHHhhhccCCCceEEEEeccccCCCCcCCHHHHHHHHHHhCcEEEEEccccccccC-CCCccHHHHhCCCCccceEEEEE
Confidence 99987644434445554444566899999999999999999999999999987653 2212111 1553 35899999
Q ss_pred CCccCCC
Q psy13453 750 THKWLLV 756 (764)
Q Consensus 750 ~HK~l~~ 756 (764)
+-|.++.
T Consensus 240 lsKAlGs 246 (388)
T COG0156 240 LGKALGS 246 (388)
T ss_pred chhhhcc
Confidence 9999984
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.7e-07 Score=96.97 Aligned_cols=224 Identities=14% Similarity=-0.032 Sum_probs=130.5
Q ss_pred ccccCCcceeeeeHHHH---HhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhC--CCCcEEEEeeCCccccc---c
Q psy13453 11 AYPSETLSLLIYESFKA---THSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKS--FLCPMCSGYCGRTLHQD---I 82 (764)
Q Consensus 11 ~~~~~~~~~~~YSv~KA---a~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~--G~~p~~VatAGTT~~G~---i 82 (764)
.+.++. .|+|+.++ +++.|+.. +.||.+. +.+|+++|+++|++..+. .++-+++-+-++. .|. .
T Consensus 74 v~~~~~---~~~~~~~~~~~~~~~g~~~---~~v~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n-~g~~~~~ 145 (338)
T cd06502 74 VICHET---AHIYTDEAGAPEFLSGVKL---LPVPGEN-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTE-GGTVYPL 145 (338)
T ss_pred EEEecC---cceeeecCCcHHHHcCceE---EeecCCC-CcCCHHHHHHHhhccCCCcCCcceEEEEEeecC-CccccCH
Confidence 445555 67777663 56678776 8888865 889999999999753211 1222333333443 353 5
Q ss_pred cCchhhhc-----CCCceeccccc--------cc------cceeeeecCCCcccc---ccc-cccc------cCCcccCC
Q psy13453 83 QSLNAPVS-----NGPLKVGGVLR--------RV------YSSCLVPRGQKSLRT---TVL-FHFL------FQHWQIPL 133 (764)
Q Consensus 83 Dpi~~ia~-----~~wlHVDa~l~--------~~------y~s~ll~rd~~~l~~---~~s-~~~d------~~d~tle~ 133 (764)
++++++++ ++++|||++.. .. ...++...-.+.+.. .+- .+.+ .......+
T Consensus 146 ~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 225 (338)
T cd06502 146 DELKAISALAKENGLPLHLDGARLANAAAALGVALKTYKSGVDSVSFCLSKGGGAPVGAVVVGNRDFIARARRRRKQAGG 225 (338)
T ss_pred HHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCHHHHHhcCCEEEEeccccCCCccceEEECCHHHHHHHHHHHHHhCC
Confidence 67777664 78999997420 00 001111111111110 000 0000 00001112
Q ss_pred CCcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCcc
Q psy13453 134 GRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDN 213 (764)
Q Consensus 134 SRr~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d 213 (764)
+-+..++..++.+..+-..++.+++++..++++++.+.|++. ++. +.++..+++++++.. .+
T Consensus 226 ~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~-~~~~~~~~~~v~~~~----------------~~ 287 (338)
T cd06502 226 GMRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLAEALEEL-GGL-ESEVQTNIVLLDPVE----------------AN 287 (338)
T ss_pred ChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhc-CCC-cccccCCeEEEecCC----------------cc
Confidence 223344555666677766789999999999999999999987 443 456788899987531 12
Q ss_pred HHHHHHHHHHH---hcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHH
Q psy13453 214 DLNKAVYDRII---ARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRT 265 (764)
Q Consensus 214 ~~n~~L~~~L~---~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~ 265 (764)
.+..++.+++. +.|..+... . ..++|+++ +..+++++++.+++.+++
T Consensus 288 ~~~~~l~~~l~~~~~~gi~~~~~---~-~~~lRi~~-~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 288 AVFVELSKEAIERRGEGVLFYAW---G-EGGVRFVT-HWDTTEEDVDELLSALKA 337 (338)
T ss_pred HHHHHHHHHHHHhhhCCEEEEec---C-CCeEEEEe-ecCCCHHHHHHHHHHHhc
Confidence 23345555554 567644322 1 26799965 556678999999998754
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1e-06 Score=97.60 Aligned_cols=155 Identities=13% Similarity=0.084 Sum_probs=102.4
Q ss_pred HHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhH
Q psy13453 565 VLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV 644 (764)
Q Consensus 565 ~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv 644 (764)
..+++++++.+|.+++ ..++|+|++++...++.+. .. ++ +++.+ -+....
T Consensus 58 ~~lr~~ia~~~~~~~~---------~i~it~Ga~~~l~~~~~~l-----~~--------------g~-viv~~-P~y~~~ 107 (356)
T PRK08056 58 RHLHQALARHHQVPAS---------WILAGNGETESIFAVVSGL-----KP--------------RR-AMIVT-PGFAEY 107 (356)
T ss_pred HHHHHHHHHHhCcChh---------hEEECCCHHHHHHHHHHHh-----CC--------------CC-EEEeC-CCcHHH
Confidence 5677788888888663 5788999998876554421 11 12 33333 233445
Q ss_pred HHHHHhCCCceEEEecCCC--CcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc---HHHHHHHHHhcCCEEEE
Q psy13453 645 EKSAIIGDVPVRQLRSDDN--GVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN---LEELGPICQEYNIWLHV 719 (764)
Q Consensus 645 ~kAa~~lGl~v~~Vp~d~~--g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp---l~eIa~i~~~~glwLHV 719 (764)
...++..|.+++.+|.+++ +.+| +++++.+.+ .+-+|+.+..++.||.+-+ +++|+++|+++++|+.+
T Consensus 108 ~~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~~~------~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~ 180 (356)
T PRK08056 108 RRALQQVGCEIRRYSLREADGWQLT-DAILEALTP------DLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALIL 180 (356)
T ss_pred HHHHHHcCCeEEEEecccccCCCcc-HHHHHhccC------CCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEE
Confidence 5678889999999998743 3455 344454432 2336667888999999987 88899999999999999
Q ss_pred eccccccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 720 DAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 720 DaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
|.+|..+..-...+-..+...+ ..-+..+++|+++.|
T Consensus 181 De~y~~~~~~~~~~~~~~~~~~-~~i~~~S~SK~~~~~ 217 (356)
T PRK08056 181 DEAFIDFIPDETGFIPQLADNP-HLWVLRSLTKFYAIP 217 (356)
T ss_pred ecchhccCCcchHHHHHhccCC-CEEEEEechhhccCc
Confidence 9999765321111112223322 346779999999854
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=2e-06 Score=95.02 Aligned_cols=154 Identities=14% Similarity=0.074 Sum_probs=107.8
Q ss_pred HHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhH
Q psy13453 565 VLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV 644 (764)
Q Consensus 565 ~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv 644 (764)
.++.+++++.+|.+.+ ...++|+|+++++..++.+.. . ++..|++..-++...
T Consensus 66 ~~lr~~ia~~~~~~~~--------~~I~~t~G~~~~i~~~~~~~~----~---------------~gd~vlv~~P~y~~~ 118 (356)
T PRK04870 66 AALKAALRAAMGVPAG--------ADVLLGNGSDELIQLLALACA----K---------------PGATVLAPEPGFVMY 118 (356)
T ss_pred HHHHHHHHHHhCcCCC--------CcEEEcCCHHHHHHHHHHHhc----C---------------CCCEEEECCCCHHHH
Confidence 3456677777787542 246788888887655543221 1 122467777888888
Q ss_pred HHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEecccc
Q psy13453 645 EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYA 724 (764)
Q Consensus 645 ~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~G 724 (764)
..++...|++++.+|+++++.+|+++|++++.+. .+-+|+.+..++.+|.+-+.+++.++++..+.|+++|.+|.
T Consensus 119 ~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~~-----~~~~v~l~~p~NPtG~~~~~~~~~~i~~~~~~~ii~De~y~ 193 (356)
T PRK04870 119 RMSAKLAGLEFVGVPLTADFTLDLPAMLAAIAEH-----RPALVFLAYPNNPTGNLFDDADVERIIEAAPGLVVVDEAYQ 193 (356)
T ss_pred HHHHHHcCCEEEEecCCCCCCCCHHHHHHHhhcC-----CCCEEEEcCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCch
Confidence 8899999999999999988899999999998642 13366667789999999999999888887799999999997
Q ss_pred ccccccchhhhhhcCCCcccEEEEcCCcc
Q psy13453 725 GSALLLPEYAHLKRGLEYVDSFDFNTHKW 753 (764)
Q Consensus 725 g~~l~~~~~r~~l~gie~aDSit~d~HK~ 753 (764)
.... ..+...+...++ --+.-++.|+
T Consensus 194 ~~~~--~~~~~~~~~~~~-vi~~~S~SK~ 219 (356)
T PRK04870 194 PFAG--DSWLPRLARFPN-LLVMRTVSKL 219 (356)
T ss_pred hhcC--cchHHHHhhCCC-EEEEecchhh
Confidence 5321 111112222222 2456778894
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.9e-07 Score=98.94 Aligned_cols=162 Identities=13% Similarity=-0.004 Sum_probs=107.3
Q ss_pred HHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHH
Q psy13453 566 LVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVE 645 (764)
Q Consensus 566 ~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~ 645 (764)
++.+.+++++|.+++ ..++|+|+++++...+.+. .. ++..|++++-++....
T Consensus 71 ~lr~~ia~~~~~~~~---------~i~~t~G~~~~l~~~~~~l----~~---------------~gd~vl~~~p~y~~~~ 122 (367)
T PRK02731 71 ELKAALAEKFGVDPE---------RIILGNGSDEILELLARAY----LG---------------PGDEVIYSEHGFAVYP 122 (367)
T ss_pred HHHHHHHHHhCcCHH---------HEEEcCCHHHHHHHHHHHh----cC---------------CCCEEEEecCCHHHHH
Confidence 455667777787543 5788898888754433321 11 1124666777776667
Q ss_pred HHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhc--CCEEEEeccc
Q psy13453 646 KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEY--NIWLHVDAAY 723 (764)
Q Consensus 646 kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~--glwLHVDaA~ 723 (764)
..+...|.+++.+|.+ ++.+|+++|++.+.+. +-+|+.+..++.+|.+-+.++|.++|+.+ |+|+++|.+|
T Consensus 123 ~~~~~~g~~~~~~~~~-~~~~~~~~l~~~~~~~------~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~y 195 (367)
T PRK02731 123 IAAQAVGAKPVEVPAK-DYGHDLDAMLAAVTPR------TRLVFIANPNNPTGTYLPAEEVERFLAGVPPDVLVVLDEAY 195 (367)
T ss_pred HHHHHcCCeEEEeccc-CCCCCHHHHHHHhCCC------CcEEEEeCCCCCCCcCCCHHHHHHHHHhCCCCcEEEEECcH
Confidence 6778899999999984 5789999999988532 44777788999999999999999999875 9999999998
Q ss_pred cccccccchhh--hhhcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 724 AGSALLLPEYA--HLKRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 724 Gg~~l~~~~~r--~~l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
.....-..... ..++.-++ .-+..++.|.++.| +-+|.+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~-~i~~~S~SK~~g~~G~RiG~l 237 (367)
T PRK02731 196 AEYVRRKDYEDGLELVAKFPN-VVVTRTFSKAYGLAGLRVGYG 237 (367)
T ss_pred HHhccCcCcccHHHHHhhcCC-EEEEeeehHhhcCcccceeee
Confidence 76432111000 11111111 23344777987644 445654
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.7e-06 Score=94.91 Aligned_cols=162 Identities=16% Similarity=0.084 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchh
Q psy13453 564 EVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSS 643 (764)
Q Consensus 564 E~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~S 643 (764)
..++.+.+++.+|.+++ ..++|+|+++++..++.+.. . ++..|++++-+|..
T Consensus 80 ~~~Lr~aia~~~~v~~e---------~I~it~Gs~~ai~~~~~~l~----~---------------~gd~Vli~~P~y~~ 131 (370)
T PRK09105 80 EDDLRTLFAAQEGLPAD---------HVMAYAGSSEPLNYAVLAFT----S---------------PTAGLVTADPTYEA 131 (370)
T ss_pred HHHHHHHHHHHhCcChh---------hEEEcCChHHHHHHHHHHHc----C---------------CCCEEEEeCCChHH
Confidence 33455667778888663 67899999998777665331 1 11246677788888
Q ss_pred HHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHh--cCCEEEEec
Q psy13453 644 VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQE--YNIWLHVDA 721 (764)
Q Consensus 644 v~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~--~glwLHVDa 721 (764)
...+++..|.+++.+|.++++.+|+++|++.. + .+-+|+.+..++.||.+-+.++|.++++. +++|+++|.
T Consensus 132 ~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~-~------~~~~v~l~nP~NPTG~~~~~~~l~~l~~~~~~~~~lIvDE 204 (370)
T PRK09105 132 GWRAADAQGAPVAKVPLRADGAHDVKAMLAAD-P------NAGLIYICNPNNPTGTVTPRADIEWLLANKPAGSVLLVDE 204 (370)
T ss_pred HHHHHHHcCCeEEEecCCCCCCCCHHHHHhcC-C------CCCEEEEeCCCCCCCcCcCHHHHHHHHHhCCCCcEEEEEC
Confidence 88899999999999999888899999997652 1 13367777889999999988888888764 489999999
Q ss_pred cccccccccchhhhhhcCCCcccEEEE-cCCccCCCC-cCceee
Q psy13453 722 AYAGSALLLPEYAHLKRGLEYVDSFDF-NTHKWLLVN-FDCSAM 763 (764)
Q Consensus 722 A~Gg~~l~~~~~r~~l~gie~aDSit~-d~HK~l~~P-~~~g~l 763 (764)
+|..+.- .+...... . ...+.+++ ++.|.++.| +-+|.+
T Consensus 205 aY~~f~~-~~s~~~~~-~-~~~~vi~~~SfSK~~g~~GlRiG~~ 245 (370)
T PRK09105 205 AYIHFSD-APSVVDLV-A-QRKDLIVLRTFSKLYGMAGMRLGLA 245 (370)
T ss_pred chHHhcc-CcchHHHH-h-hCCCEEEEecccHhhcCCccceeee
Confidence 9954321 11111111 1 12355665 777877644 224543
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.2e-06 Score=102.48 Aligned_cols=231 Identities=10% Similarity=-0.012 Sum_probs=142.2
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccCchhhhc-----CCC
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQSLNAPVS-----NGP 93 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDpi~~ia~-----~~w 93 (764)
.|.|..-.+...|+.. +.||+|++|.+|+++|+++|++.. . ...+ +.|-++|..+..+|+.+|++ ++.
T Consensus 600 aHgtNpasa~~~GieV---v~Vp~D~~G~iDle~L~a~I~~~~--~-~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Gal 673 (954)
T PRK12566 600 AHGTNPASAQMAGMRV---VIVECDPDGNVDLDDLKAKAAAAG--D-RLSCLMITYPSTHGVYEEGIREICEVVHQHGGQ 673 (954)
T ss_pred ccccCHHHHHHCCCEE---EEeccCCCCCcCHHHHHHHhhccC--C-CEEEEEEEecCcCceecchHHHHHHHHHHcCCE
Confidence 5655555688889887 999999999999999999997421 1 2334 58889888888899999886 778
Q ss_pred ceeccccccc---------cce-eeeecCCCccc--cc--------ccc--c--cccCCcc---c------CCCC----c
Q psy13453 94 LKVGGVLRRV---------YSS-CLVPRGQKSLR--TT--------VLF--H--FLFQHWQ---I------PLGR----R 136 (764)
Q Consensus 94 lHVDa~l~~~---------y~s-~ll~rd~~~l~--~~--------~s~--~--~d~~d~t---l------e~SR----r 136 (764)
++|||+.... +++ ++...-.+++- .. +.+ + .-...|. . ++++ -
T Consensus 674 v~vDgA~~~a~~~l~~Pg~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~ 753 (954)
T PRK12566 674 VYMDGANLNAQVGLARPADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSAAPW 753 (954)
T ss_pred EEEEeeChhhccCCCChhhcCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCCCCCCceeeccc
Confidence 8999953100 111 11110011110 00 000 0 0001110 1 1111 1
Q ss_pred cc---HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC---C-ceeEEEEeeccccccccccccCcc
Q psy13453 137 FR---ALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPP---S-MGLVCFRLKVRFWDKLDNLFGTIS 209 (764)
Q Consensus 137 ~~---ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P---~-l~iV~Fry~P~~~~~~~~~~~~~~ 209 (764)
.. ++..|+-|+.+|.+ .++.-+.++.+|+|++++|++ ++++...+ . +.-..++..+ ... .
T Consensus 754 gsa~~l~~A~~Yi~~lG~e-Lk~aa~~ailnAnYla~rL~~--~~~v~~~~~~~~~~hEfii~~~~--l~~--------~ 820 (954)
T PRK12566 754 GSASILPISWMYIAMMGPQ-LADASEVAILSANYLANQLGG--AFPVLYRGRNERVAHECILDLRP--LKA--------Q 820 (954)
T ss_pred chHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHhHh--hCCCCcCCCCCCeeeEEEEEccc--ccc--------c
Confidence 12 45779999999999 999999999999999999987 44444333 1 1111222111 000 0
Q ss_pred CCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHcc
Q psy13453 210 FGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLRG 273 (764)
Q Consensus 210 ~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~~ 273 (764)
.+.+. ..+.++|.+.|...... .|.....||++.+--+ +++++|+|++.++.+.+++.+-
T Consensus 821 ~g~~~--~dvakRL~d~Gihapt~-~fPv~~~LmIepTE~e-skeEIDrf~eAL~~I~~e~~~v 880 (954)
T PRK12566 821 TGISE--EDVAKRLMDYGFHAPTM-SFPVPGTLMVEPTESE-SKAELDRFVEAMLSIRAEIGKV 880 (954)
T ss_pred cCCCH--HHHHHHHHHCCcEEeEE-eeccCCEEEEEeeeeC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 01221 45788888878744332 3445668999876655 5889999999999999887543
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.2e-06 Score=96.79 Aligned_cols=157 Identities=15% Similarity=0.010 Sum_probs=110.9
Q ss_pred HHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhH
Q psy13453 565 VLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV 644 (764)
Q Consensus 565 ~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv 644 (764)
..+.+++++.+|.+++ ..++|+|+++++.+++.+. ... ++..|+++.-++...
T Consensus 60 ~~l~~~~a~~~g~~~~---------~I~~~~Gs~e~i~~~~~~~----~~~--------------g~~~vli~~P~y~~y 112 (351)
T PRK01688 60 KAVIENYAAYAGVKPE---------QVLVSRGADEGIELLIRAF----CEP--------------GKDAILYCPPTYGMY 112 (351)
T ss_pred HHHHHHHHHHhCCCHH---------HEEEcCCHHHHHHHHHHHh----cCC--------------CCCEEEEcCCCHHHH
Confidence 4677789999998764 6789999999876665432 110 112467777888888
Q ss_pred HHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhc--CCEEEEecc
Q psy13453 645 EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEY--NIWLHVDAA 722 (764)
Q Consensus 645 ~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~--glwLHVDaA 722 (764)
..+++..|++++.||.++++.+|+++|++++. . +-+|+.+..++.||.+-+.+++.++++.. +.+++||.|
T Consensus 113 ~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~~~-~------~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEa 185 (351)
T PRK01688 113 SVSAETIGVEIRTVPTLDNWQLDLPAIADNLD-G------VKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEA 185 (351)
T ss_pred HHHHHHcCCEEEEeecCCCCCCCHHHHHHhcc-C------CcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECc
Confidence 88999999999999998889999999998872 2 23677789999999998877777776532 689999999
Q ss_pred ccccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 723 YAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 723 ~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
|.-+.. .+.....+...++ =-+.-++.|+++.|
T Consensus 186 y~~f~~-~~s~~~~~~~~~n-~iv~rSfSK~~gla 218 (351)
T PRK01688 186 YIEFCP-QASLAGWLAEYPH-LVILRTLSKAFALA 218 (351)
T ss_pred hhhcCC-CCChHHHHhhCCC-EEEEecchHhhcCH
Confidence 976431 1111112211111 14566888987644
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.4e-06 Score=94.28 Aligned_cols=175 Identities=15% Similarity=0.106 Sum_probs=115.4
Q ss_pred ccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCC-cEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccC
Q psy13453 552 FSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPG-GGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRN 630 (764)
Q Consensus 552 ~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~-~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~ 630 (764)
..|........+.+.+.+|+.+.+|.+-+ .. ..++|+|++++..+++.+.. . +
T Consensus 62 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~-------~~~~I~it~G~~~al~~~~~~l~----~---------------~ 115 (405)
T PRK09148 62 HRYSASKGIPGLRRAQAAYYARRFGVKLN-------PDTQVVATLGSKEGFANMAQAIT----A---------------P 115 (405)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCCC-------CCCcEEEcCChHHHHHHHHHHhc----C---------------C
Confidence 34444445567888888888887776421 12 57899999998766654321 1 1
Q ss_pred ceEEEecCCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccH---HHHH
Q psy13453 631 KLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNL---EELG 707 (764)
Q Consensus 631 ~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl---~eIa 707 (764)
...|++..-++.....++...|++++.||++.++. +++++++.++... ..+.+|+.+..++.+|.+-+. ++|.
T Consensus 116 gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~-~~~~l~~~~~~~~---~~~~~v~l~~P~NPtG~~~s~~~l~~l~ 191 (405)
T PRK09148 116 GDVILCPNPSYPIHAFGFIMAGGVIRSVPAEPDEE-FFPALERAVRHSI---PKPIALIVNYPSNPTAYVADLDFYKDVV 191 (405)
T ss_pred CCEEEEcCCCCcccHHHHHhcCCEEEEEeCCCCCC-CccCHHHHHhhcc---ccceEEEEeCCCCCCCcCCCHHHHHHHH
Confidence 12466677777777778888999999999975542 3556666665322 135688888889999998665 6788
Q ss_pred HHHHhcCCEEEEecccccccccc---chhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 708 PICQEYNIWLHVDAAYAGSALLL---PEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 708 ~i~~~~glwLHVDaA~Gg~~l~~---~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
++|++||+|+++|.+|+....-. +.... +.+.....-+.-++.|.++.|
T Consensus 192 ~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~-~~~~~~~~i~~~SfSK~~~~p 243 (405)
T PRK09148 192 AFAKKHDIIILSDLAYSEIYFDGNPPPSVLQ-VPGAKDVTVEFTSMSKTFSMA 243 (405)
T ss_pred HHHHHcCeEEEEeccchhhhcCCCCCCChhh-CCCccCcEEEEeccccccCCc
Confidence 88999999999999998643211 11111 112111123467899988755
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.8e-06 Score=95.42 Aligned_cols=160 Identities=16% Similarity=0.137 Sum_probs=108.3
Q ss_pred HHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCC-ccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhc
Q psy13453 539 VGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLP-EEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQ 617 (764)
Q Consensus 539 lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p-~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~ 617 (764)
+.+.+...++ ....|........+-+.+.+|+.+..|++ -+ .....++|+|++++...++.+..+ + +
T Consensus 47 ~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~------~~~~i~it~G~~~al~~~~~~l~~---~--~ 114 (396)
T PRK09147 47 IKDALAANLD-GLASYPTTAGLPALREAIAAWLERRYGLPALD------PATQVLPVNGSREALFAFAQTVID---R--D 114 (396)
T ss_pred HHHHHHHHhh-hhcCCCCCCCCHHHHHHHHHHHHHHhCCCcCC------ccceEEECCChHHHHHHHHHHHcC---C--C
Confidence 3334444333 23445544455667778888888888865 21 002467889999987665543211 0 0
Q ss_pred cCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCC--CCcccHHHHHHHHHHhhhcCCCceEEEEeeccC
Q psy13453 618 SKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTT 695 (764)
Q Consensus 618 ~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~--~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT 695 (764)
.+ +..|++..-+......++..+|++++.||+++ ++.+|+++|++.+.+. +-+|+.+..++
T Consensus 115 ~~-----------gd~vlv~~P~y~~~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~~------~k~i~l~nP~N 177 (396)
T PRK09147 115 GP-----------GPLVVCPNPFYQIYEGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVWAR------TQLLFVCSPGN 177 (396)
T ss_pred CC-----------CCEEEEcCCCccchHHHHHhcCCEEEEeccCccccCccCHHHHHHHHhhc------cEEEEEcCCCC
Confidence 00 12355555555666778888999999999974 3579999999887543 33556668899
Q ss_pred Cccccc---cHHHHHHHHHhcCCEEEEeccccccc
Q psy13453 696 GTCAFD---NLEELGPICQEYNIWLHVDAAYAGSA 727 (764)
Q Consensus 696 ~~GaiD---pl~eIa~i~~~~glwLHVDaA~Gg~~ 727 (764)
.||.+= .+++|+++|++|++|+.+|-+|+-..
T Consensus 178 PTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~ 212 (396)
T PRK09147 178 PTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIY 212 (396)
T ss_pred CcCccCCHHHHHHHHHHHHHcCeEEEeeccccccc
Confidence 999884 77888889999999999999998753
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.9e-06 Score=94.99 Aligned_cols=129 Identities=12% Similarity=0.049 Sum_probs=92.7
Q ss_pred HHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhH
Q psy13453 565 VLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV 644 (764)
Q Consensus 565 ~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv 644 (764)
.++.+.+++++|.++ ...++|+|+++++..++.+. .. ++..|++..-+....
T Consensus 60 ~~lr~~ia~~~~~~~---------~~I~~~~G~~~~l~~~~~~~----~~---------------~gd~Vli~~p~y~~~ 111 (352)
T PRK03321 60 VELRAALAEHLGVPP---------EHVAVGCGSVALCQQLVQAT----AG---------------PGDEVIFAWRSFEAY 111 (352)
T ss_pred HHHHHHHHHHhCcCH---------HHEEECCCHHHHHHHHHHHh----cC---------------CCCEEEeCCCCHHHH
Confidence 345566677777654 25788888887765544321 11 112355554444444
Q ss_pred HHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHh--cCCEEEEecc
Q psy13453 645 EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQE--YNIWLHVDAA 722 (764)
Q Consensus 645 ~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~--~glwLHVDaA 722 (764)
..+++..|.+++.||.++++.+|++++++.+++. +-+|+.+..++.+|.+-|.++|.++|++ +++|+++|.+
T Consensus 112 ~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~~------~~~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~ 185 (352)
T PRK03321 112 PILVQVAGATPVQVPLTPDHTHDLDAMAAAITDR------TRLIFVCNPNNPTGTVVTPAELARFLDAVPADVLVVLDEA 185 (352)
T ss_pred HHHHHHcCCEEEEccCCCCCCCCHHHHHHhhccC------CCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEech
Confidence 5567788999999999877899999999988542 3367777889999999999999999987 5999999999
Q ss_pred ccccc
Q psy13453 723 YAGSA 727 (764)
Q Consensus 723 ~Gg~~ 727 (764)
|+...
T Consensus 186 y~~~~ 190 (352)
T PRK03321 186 YVEYV 190 (352)
T ss_pred HHHhc
Confidence 98654
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.1e-06 Score=97.97 Aligned_cols=149 Identities=17% Similarity=0.082 Sum_probs=99.3
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
..|....+|+. ++++. .+ ..+++++|+.++..++.+. .. +...|+
T Consensus 49 ~~p~~~~Le~~----lA~l~--~~----------~~v~~~sG~~Ai~~~l~al----l~---------------~Gd~Vl 93 (366)
T PRK07582 49 SNPTWRALEAA----LGELE--GA----------EALVFPSGMAAITAVLRAL----LR---------------PGDTVV 93 (366)
T ss_pred CCccHHHHHHH----HHHHc--CC----------CEEEECCHHHHHHHHHHHh----cC---------------CCCEEE
Confidence 45666667764 45554 22 3678888888876665432 11 122466
Q ss_pred ecCCcchhHHHHH----HhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHH
Q psy13453 636 TSDQSNSSVEKSA----IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQ 711 (764)
Q Consensus 636 ~S~~aH~Sv~kAa----~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~ 711 (764)
++...++.....+ ...|++++.|+.++++. .+.+. +-+|+....++.+|.+.|+++|+++|+
T Consensus 94 ~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~~~~~--------~~~~~------t~lV~le~p~NPtg~v~di~~I~~~a~ 159 (366)
T PRK07582 94 VPADGYYQVRALAREYLAPLGVTVREAPTAGMAE--------AALAG------ADLVLAETPSNPGLDVCDLAALAAAAH 159 (366)
T ss_pred EeCCCcHhHHHHHHHHHhcCeEEEEEECCCChHH--------HhccC------ceEEEEECCCCCCCCccCHHHHHHHHH
Confidence 7777776655433 34788999998764321 11121 336667788888999999999999999
Q ss_pred hcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCc
Q psy13453 712 EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDC 760 (764)
Q Consensus 712 ~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~ 760 (764)
++|++++||++|+.+....| .. + .+|-+..++|||++.|-++
T Consensus 160 ~~g~~lvVD~t~~~~~~~~p-~~-----~-g~Divv~S~sK~l~G~~g~ 201 (366)
T PRK07582 160 AAGALLVVDNTTATPLGQRP-LE-----L-GADLVVASDTKALTGHSDL 201 (366)
T ss_pred HcCCEEEEECCCCCccccCc-hh-----c-CCcEEEecccccccCCCCe
Confidence 99999999999864322111 11 1 3699999999999887663
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.3e-06 Score=95.44 Aligned_cols=158 Identities=14% Similarity=0.117 Sum_probs=111.3
Q ss_pred HHHHHHHHhhccc-CccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhh
Q psy13453 538 IVGDMLSGAFGLI-GFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHW 616 (764)
Q Consensus 538 ~lad~l~~~lN~n-~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~ 616 (764)
.+-+.+...++.. ...|........+-+.+.+|+.+..|++-+ ....++|+|+++++..++.+.. .
T Consensus 53 ~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~-------~~~I~it~G~~~al~~~~~~l~----~-- 119 (409)
T PLN00143 53 IAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLS-------PDDVYLTLGCKHAAEIIIKVLA----R-- 119 (409)
T ss_pred HHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCC-------HhhEEEecChHHHHHHHHHHHc----C--
Confidence 3444444445433 233544455666777788888877666432 2467899999998777655321 1
Q ss_pred ccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecC--CCCcccHHHHHHHHHHhhhcCCCceEEEEeecc
Q psy13453 617 QSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGT 694 (764)
Q Consensus 617 ~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d--~~g~md~~~Le~~I~~~~~~G~~p~~VvataGT 694 (764)
+...|++..-+.......+...|.+++.++.+ +++.+|+++|++++++. +..++.+..+
T Consensus 120 -------------~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~~~~~nP~ 180 (409)
T PLN00143 120 -------------PEANILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADEN------TIAMVIINPG 180 (409)
T ss_pred -------------CCCEEEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCCcCCHHHHHHhcccC------CEEEEEECCC
Confidence 11245666667777778888999999999985 35679999999887543 3366666789
Q ss_pred CCcccccc---HHHHHHHHHhcCCEEEEeccccccc
Q psy13453 695 TGTCAFDN---LEELGPICQEYNIWLHVDAAYAGSA 727 (764)
Q Consensus 695 T~~GaiDp---l~eIa~i~~~~glwLHVDaA~Gg~~ 727 (764)
+.||.+-+ +++|+++|++|++|+++|.+|....
T Consensus 181 NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~ 216 (409)
T PLN00143 181 NPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIV 216 (409)
T ss_pred CCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccc
Confidence 99999965 7778888999999999999998643
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.4e-06 Score=94.40 Aligned_cols=216 Identities=8% Similarity=-0.010 Sum_probs=134.1
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccH--HHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhh---c----
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAY--LTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPV---S---- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~--~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia---~---- 90 (764)
.|+|+.++++.+|+.. +.||+++++.++. +.+++.+.. .+.+++.+.+++++|.+.|++++. +
T Consensus 92 ~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~ 163 (350)
T cd00609 92 TYPGYEAAARLAGAEV---VPVPLDEEGGFLLDLELLEAAKTP-----KTKLLYLNNPNNPTGAVLSEEELEELAELAKK 163 (350)
T ss_pred CchhHHHHHHHCCCEE---EEEecccccCCccCHHHHHhhcCc-----cceEEEEECCCCCCCcccCHHHHHHHHHHHHh
Confidence 6899999999999766 9999998888876 555555433 223445666999999999987654 2
Q ss_pred -CCCceeccccccc------c---------ce-eeeecCCCccc-c----c-ccccc-c-------cCCcccCCCCcccH
Q psy13453 91 -NGPLKVGGVLRRV------Y---------SS-CLVPRGQKSLR-T----T-VLFHF-L-------FQHWQIPLGRRFRA 139 (764)
Q Consensus 91 -~~wlHVDa~l~~~------y---------~s-~ll~rd~~~l~-~----~-~s~~~-d-------~~d~tle~SRr~~A 139 (764)
++|+++|++.... . .. +++..-.+.+. . . +.... + ...+...+......
T Consensus 164 ~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (350)
T cd00609 164 HGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQ 243 (350)
T ss_pred CCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccCCcccceEEEecCHHHHHHHHHHHHHhcccCCChHHH
Confidence 8899999964210 0 00 11111111111 0 0 00000 0 11111112223333
Q ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHH
Q psy13453 140 LKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAV 219 (764)
Q Consensus 140 LklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L 219 (764)
..++..++... +++.++.++..+.++++.+.+++.+...+..++.-+.+.|++.+ . .....+
T Consensus 244 ~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~---------------~--~~~~~~ 305 (350)
T cd00609 244 AAAAAALDDGE-EHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPE---------------G--DDEEFL 305 (350)
T ss_pred HHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCccEEEEEecCC---------------C--ChHHHH
Confidence 45555555444 88999999999999999999999876654333434455555431 1 012356
Q ss_pred HHHHHhcCcEEEEeceeC--CeeEEEEeccCCCCCHHHHHHHHHHHH
Q psy13453 220 YDRIIARKVIYIVKGSFQ--DRLFMRFAICSSQTEESDVQLGWNEIR 264 (764)
Q Consensus 220 ~~~L~~~G~~~vs~t~l~--g~~~LRi~v~np~Tt~e~i~~~l~~l~ 264 (764)
.+.|.+.|.......... +..++|+++..+ +++++.+++.|+
T Consensus 306 ~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~---~~~i~~~~~al~ 349 (350)
T cd00609 306 ERLLLEAGVVVRPGSAFGEGGEGFVRLSFATP---EEELEEALERLA 349 (350)
T ss_pred HHHHHhCCEEEecccccccCCCCeEEEEeeCC---HHHHHHHHHHhh
Confidence 667777787555444333 678999998888 999999998875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.1e-06 Score=97.78 Aligned_cols=157 Identities=15% Similarity=0.051 Sum_probs=108.4
Q ss_pred HHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHH
Q psy13453 566 LVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVE 645 (764)
Q Consensus 566 ~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~ 645 (764)
.+.+++++.+|.+++ ..++|+|+++++...+.+. .. ++..|++..-++....
T Consensus 75 ~lr~~ia~~~~~~~~---------~i~~t~G~~~~l~~~~~~~----~~---------------~gd~vli~~P~y~~~~ 126 (371)
T PRK05166 75 ALREAIAARTGVPAD---------RIILGNGSEDLIAVICRAV----LR---------------PGDRVVTLYPSFPLHE 126 (371)
T ss_pred HHHHHHHHHhCcCHH---------HEEEcCCHHHHHHHHHHHh----cC---------------CCCEEEEcCCChHHHH
Confidence 466777888887653 6789999999865544322 11 1224666777777778
Q ss_pred HHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHh--cCCEEEEeccc
Q psy13453 646 KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQE--YNIWLHVDAAY 723 (764)
Q Consensus 646 kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~--~glwLHVDaA~ 723 (764)
..++..|++++.||.++++.+|+++|++.+++.. -+|+.+..++.||.+-+.+++.++++. +++|+++|.+|
T Consensus 127 ~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~~~------~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y 200 (371)
T PRK05166 127 DYPTMMGARVERVTVTPDLGFDLDALCAAVARAP------RMLMFSNPSNPVGSWLTADQLARVLDATPPETLIVVDEAY 200 (371)
T ss_pred HHHHHcCCeEEEeecCCCCCCCHHHHHHhhhcCC------CEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECcH
Confidence 8888999999999999889999999999886542 366778899999999888777777654 48999999999
Q ss_pred cccccccchhhh---hhcCCCcccEEEEcCCccCCCC
Q psy13453 724 AGSALLLPEYAH---LKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 724 Gg~~l~~~~~r~---~l~gie~aDSit~d~HK~l~~P 757 (764)
+-.. ....+.. .+.....---+.-++-|.++.|
T Consensus 201 ~~~~-~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~ 236 (371)
T PRK05166 201 AEYA-AGDDYPSALTLLKARGLPWIVLRTFSKAYGLA 236 (371)
T ss_pred HHhc-CCcCcccHHHHHhhcCCCEEEEeechHhhhcc
Confidence 8654 2111111 1111100013556789988744
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=98.48 E-value=4e-06 Score=94.18 Aligned_cols=159 Identities=13% Similarity=0.045 Sum_probs=101.0
Q ss_pred HHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhH
Q psy13453 565 VLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV 644 (764)
Q Consensus 565 ~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv 644 (764)
.++-+.|++++|.+ ..+|+++||+||..|+.+||....... + .. ..++-+|.++..-|-+.
T Consensus 86 ~~l~~~l~~~~~~~-----------~~~~~~SGs~A~e~al~~a~~~~~~~~---g--~~---~~~~~vi~~~~~~HG~~ 146 (401)
T PRK00854 86 APLYEELAALTGSH-----------KVLPMNSGAEAVETAIKAVRKWGYEVK---G--VP---EGQAEIIVCADNFHGRT 146 (401)
T ss_pred HHHHHHHHhhCCCC-----------EEEEeCCcHHHHHHHHHHHHHHHHhcc---C--CC---CCCceEEEECCCcCCcc
Confidence 33444566666653 368999999999999999987532110 0 00 00123566666667665
Q ss_pred HHHHHhCC------------CceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc----HHHHHH
Q psy13453 645 EKSAIIGD------------VPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN----LEELGP 708 (764)
Q Consensus 645 ~kAa~~lG------------l~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp----l~eIa~ 708 (764)
.-+..+.+ .++..+|- .|+++|++.|.+. +.+|+.....+.+|.+-| +++|++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~i~~~------~~aii~e~~~~~~G~~~~~~~~l~~l~~ 215 (401)
T PRK00854 147 LSIVGFSTDPDARGGFGPFTPGFRVVPF-----GDAEALEAAITPN------TVAFLVEPIQGEAGVIIPPAGYFTRVRE 215 (401)
T ss_pred HHHHhccCCccccccCCCCCCCeEEeCC-----CCHHHHHHHhCCC------eEEEEEccccCCCCCcCCCHHHHHHHHH
Confidence 44332211 12333332 4789999988542 447777778888898876 999999
Q ss_pred HHHhcCCEEEEeccccccccccch-hhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 709 ICQEYNIWLHVDAAYAGSALLLPE-YAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 709 i~~~~glwLHVDaA~Gg~~l~~~~-~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
+|++||+++++|.+|.|. -..++ +.....|+ .+|-++++ |++..-
T Consensus 216 l~~~~gi~lI~DEv~~g~-g~~g~~~~~~~~g~-~~D~~~~~--K~l~gg 261 (401)
T PRK00854 216 LCTANNVTLILDEIQTGL-GRTGKLLAEEHEGI-EADVTLIG--KALSGG 261 (401)
T ss_pred HHHHcCCEEEEechhhCC-CCCchHhHHhhcCC-CCCEEEec--ccccCC
Confidence 999999999999999863 22222 11222344 35777774 888654
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1e-06 Score=97.30 Aligned_cols=156 Identities=18% Similarity=0.099 Sum_probs=106.6
Q ss_pred HHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHH
Q psy13453 566 LVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVE 645 (764)
Q Consensus 566 ~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~ 645 (764)
++.+++++.+|.++ ...++|+|+++++..++.+. .. ++..|++.+-+.....
T Consensus 68 ~lr~~ia~~~~~~~---------~~i~~t~G~~~~l~~~~~~~----~~---------------~gd~v~~~~p~y~~~~ 119 (359)
T PRK03158 68 ELRTKVAKHLGVDE---------EQLLFGAGLDEVIQMISRAL----LN---------------PGTNTVMAEPTFSQYR 119 (359)
T ss_pred HHHHHHHHHhCCCH---------HHEEECCCHHHHHHHHHHHH----hC---------------CCCEEEEcCCCHHHHH
Confidence 35566666677654 25789999999875444322 11 1124666666677777
Q ss_pred HHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHh--cCCEEEEeccc
Q psy13453 646 KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQE--YNIWLHVDAAY 723 (764)
Q Consensus 646 kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~--~glwLHVDaA~ 723 (764)
.++...|.+++.+|++ ++.+|+++|++.+.+. +-+|+.+..++.+|.+-+.++|.++++. +|+|+++|.+|
T Consensus 120 ~~~~~~g~~~~~~~~~-~~~~d~~~l~~~~~~~------~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y 192 (359)
T PRK03158 120 HNAIIEGAEVREVPLK-DGGHDLEAMLKAIDEQ------TKIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDEAY 192 (359)
T ss_pred HHHHHcCCeEEEEecC-CCCcCHHHHHHhcCCC------CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECch
Confidence 8888899999999998 6889999999887542 3366667889999999999999999887 59999999999
Q ss_pred cccccccc--hhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 724 AGSALLLP--EYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 724 Gg~~l~~~--~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
..+..... .....++..+ -.-+.-++.|.++.|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~-~vi~~~S~SK~~g~~ 227 (359)
T PRK03158 193 YEYVTAEDYPDTLPLLEKYE-NLIVLRTFSKAYGLA 227 (359)
T ss_pred HhhcCCcccccHHHHHHhcC-CEEEEEechHhhcCc
Confidence 86542111 1111111111 124446888988754
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.3e-06 Score=97.18 Aligned_cols=145 Identities=12% Similarity=0.086 Sum_probs=103.1
Q ss_pred hHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecC
Q psy13453 559 ACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSD 638 (764)
Q Consensus 559 ~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~ 638 (764)
....+-+.+.+|+.+.+|.+.. -.....++|+|+++++...+.+.. . ++..|++.+
T Consensus 87 G~~~LR~aiA~~l~~~~~~~~~-----v~~~~Iiit~Ga~~al~~l~~~l~-----~--------------pGd~Vlv~~ 142 (468)
T PLN02450 87 GLPAFKNALAEFMSEIRGNKVT-----FDPNKLVLTAGATSANETLMFCLA-----E--------------PGDAFLLPT 142 (468)
T ss_pred ChHHHHHHHHHHHHHhhCCCCC-----cChHHeEEccChHHHHHHHHHHhC-----C--------------CCCEEEECC
Confidence 3345667777888777664311 012357889999998665554321 1 122455665
Q ss_pred CcchhHHHHHH-hCCCceEEEecC--CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc---cHHHHHHHHHh
Q psy13453 639 QSNSSVEKSAI-IGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD---NLEELGPICQE 712 (764)
Q Consensus 639 ~aH~Sv~kAa~-~lGl~v~~Vp~d--~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD---pl~eIa~i~~~ 712 (764)
-........+. ..|.+++.||++ +++.+|+++|++++++..+++..+-+|+.+..++.||.+- .+++|.++|++
T Consensus 143 P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~ 222 (468)
T PLN02450 143 PYYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITA 222 (468)
T ss_pred CCCCchHHHHhhcCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHH
Confidence 56666666666 489999999985 4567899999999987666666676777788999999985 56677888999
Q ss_pred cCCEEEEeccccccc
Q psy13453 713 YNIWLHVDAAYAGSA 727 (764)
Q Consensus 713 ~glwLHVDaA~Gg~~ 727 (764)
|++|+.+|-+|+...
T Consensus 223 ~~~~iI~DE~Y~~~~ 237 (468)
T PLN02450 223 KNIHLISDEIYSGTV 237 (468)
T ss_pred CCcEEEEEccccccc
Confidence 999999999998753
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.8e-06 Score=91.97 Aligned_cols=174 Identities=14% Similarity=0.055 Sum_probs=113.5
Q ss_pred ccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCC-cEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccC
Q psy13453 552 FSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPG-GGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRN 630 (764)
Q Consensus 552 ~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~-~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~ 630 (764)
..|...+....+-+.+.+|+.+..|++-+ .. ..++|+|++++...++.+.. . +
T Consensus 62 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~-------~~~~I~it~Gs~~al~~~~~~l~----~---------------~ 115 (388)
T PRK07366 62 HGYLLFHGTLDFREAAAQWYEQRFGLAVD-------PETEVLPLIGSQEGTAHLPLAVL----N---------------P 115 (388)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCcCC-------CcCeEEECCCcHHHHHHHHHHhC----C---------------C
Confidence 34544455667778888888887776432 12 36778999998766554321 1 1
Q ss_pred ceEEEecCCcchhHHHHHHhCCCceEEEecCCC--CcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccHHH
Q psy13453 631 KLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDN--GVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLEE 705 (764)
Q Consensus 631 ~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~--g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~e 705 (764)
+..|++.+=+.......++..|.+++.||.+++ +.+|++++++.+.+. +-+|+.+..++.||.+ +.+++
T Consensus 116 gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~------~k~i~l~~p~NPTG~~~s~~~~~~ 189 (388)
T PRK07366 116 GDFALLLDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVLAQ------ARLMVLSYPHNPTTAIAPLSFFQE 189 (388)
T ss_pred CCEEEEcCCCCcchHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhccc------ceEEEEeCCCCCCCccCCHHHHHH
Confidence 124556666666677888899999999999743 468888888776432 3355666689999998 45667
Q ss_pred HHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcc-c--EEEEcCCccCCCC
Q psy13453 706 LGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYV-D--SFDFNTHKWLLVN 757 (764)
Q Consensus 706 Ia~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~a-D--Sit~d~HK~l~~P 757 (764)
|+++|++||+|+.+|-+|+-...--......+..+... + -+.-++.|.++.|
T Consensus 190 l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~ 244 (388)
T PRK07366 190 AVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMG 244 (388)
T ss_pred HHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCc
Confidence 77889999999999999986542111101111122111 2 2346899988655
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.2e-07 Score=97.26 Aligned_cols=172 Identities=17% Similarity=0.101 Sum_probs=123.6
Q ss_pred cccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCce
Q psy13453 553 SWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKL 632 (764)
Q Consensus 553 ~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~ 632 (764)
.|..+--..++|..+++...+|||..-. -+=.-+||.||+.+..+-.+. ... =+
T Consensus 63 yYgGce~VD~vE~laierak~LFga~~a----------nVQPhSGs~AN~av~~All~p---GDt-------------im 116 (413)
T COG0112 63 YYGGCEYVDEVEELAIERAKKLFGAEYA----------NVQPHSGSQANQAVYLALLQP---GDT-------------IM 116 (413)
T ss_pred ccCCCeeHHHHHHHHHHHHHHHhCCCcc----------ccCCCCchHHHHHHHHHHcCC---CCe-------------Ee
Confidence 4456677889999999999999998631 123346889998776643221 100 01
Q ss_pred EEEecCCcchhHHHHHHhCCC--ceEEEecC-CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHH
Q psy13453 633 VAYTSDQSNSSVEKSAIIGDV--PVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPI 709 (764)
Q Consensus 633 vi~~S~~aH~Sv~kAa~~lGl--~v~~Vp~d-~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i 709 (764)
-+=.+.-.|-+--......|. ++..-++| +++.||.|++++.+.+. +|-+|+ +|.+.+--.-|++++++|
T Consensus 117 gm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~et~~IDyD~~~k~a~e~-----kPK~ii--~G~SaY~r~id~~~~reI 189 (413)
T COG0112 117 GLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKEV-----KPKLII--AGGSAYSRPIDFKRFREI 189 (413)
T ss_pred cccCCCCCcccCCCCCCccceeEEeEecccccccCccCHHHHHHHHHHh-----CCCEEE--ECccccccccCHHHHHHH
Confidence 112344444443322233343 66677788 67999999999999886 366664 577777778899999999
Q ss_pred HHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCc
Q psy13453 710 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDC 760 (764)
Q Consensus 710 ~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~ 760 (764)
|++.|.+|-+|.||-.+++....+. .-++.||-+|.+.||.|..|.|-
T Consensus 190 ad~VGA~L~~DmAHiaGLVA~G~~p---~P~~~AdvVTtTTHKTlrGPrGG 237 (413)
T COG0112 190 ADEVGAYLMVDMAHVAGLIAGGVHP---NPLPHADVVTTTTHKTLRGPRGG 237 (413)
T ss_pred HHHhCceEEehHHHHHHHHhcccCC---CCCCccceEeCCcccCCCCCCce
Confidence 9999999999999988877665544 34678999999999999999884
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.2e-06 Score=97.95 Aligned_cols=177 Identities=16% Similarity=0.127 Sum_probs=109.1
Q ss_pred ccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceE
Q psy13453 554 WLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633 (764)
Q Consensus 554 ~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~v 633 (764)
|.......++|..+.+...++||.++... ..-+=.-+||.||+.++.+-.+. .. .=+.
T Consensus 58 y~G~~~id~iE~la~~ra~~lF~~~~~~w------~anvqp~SGs~An~av~~aLl~p---GD-------------~Im~ 115 (399)
T PF00464_consen 58 YGGCEYIDEIEELAIERAKELFGAEPKEW------YANVQPHSGSQANLAVYMALLKP---GD-------------TIMG 115 (399)
T ss_dssp SSSTHHHHHHHHHHHHHHHHHHT-STTTE------EEE---SSHHHHHHHHHHHHT-T---T--------------EEEE
T ss_pred ccCcchhhHHHHHHHHHHHHHhCCCcccc------eEEeecCCchHHHHHHHHHHHhh---cC-------------cEEe
Confidence 34456788999999999999999975311 12233468899997776643221 00 0011
Q ss_pred EEecCCcchhHHHHHHh-----C--CCceEEEecC-CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHH
Q psy13453 634 AYTSDQSNSSVEKSAII-----G--DVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEE 705 (764)
Q Consensus 634 i~~S~~aH~Sv~kAa~~-----l--Gl~v~~Vp~d-~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~e 705 (764)
+=.+.-.|.|-...... . ..++...++| +++.||.+++++.+++. +|-+|++ |.+.+--.-|+++
T Consensus 116 l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~~-----kPklIi~--G~S~y~~~~d~~~ 188 (399)
T PF00464_consen 116 LSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDELEKLAKEH-----KPKLIIC--GASSYPRPIDFKR 188 (399)
T ss_dssp EEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHHHH-------SEEEE--E-SSTSS---HHH
T ss_pred cChhhcccccccccccccccccccceEEEEeeeeecCCCeECHHHHHHHHhhc-----CCCEEEE--CchhccCccCHHH
Confidence 22344456664333222 2 2356777888 78999999999999875 3656653 3344455568999
Q ss_pred HHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 706 LGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 706 Ia~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
+++||++.|.+|++|+||-++++....+..- ++.||.+|.+.||.|..|.+ |++
T Consensus 189 ~reIad~vga~l~~D~sH~~GLIa~g~~~~P---~~~ADvvt~sThKtl~GPrg-giI 242 (399)
T PF00464_consen 189 FREIADEVGAYLMADISHIAGLIAGGLFPNP---FPYADVVTGSTHKTLRGPRG-GII 242 (399)
T ss_dssp HHHHHHHTT-EEEEE-TTTHHHHHTTSS--G---CCTSSEEEEESSGGG-SSS--EEE
T ss_pred HHHHHHhcCcEEEecccccccceehheecCc---cccceEEEeeccccccccCc-eEE
Confidence 9999999999999999998887776555433 45689999999999999987 443
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.4e-06 Score=93.23 Aligned_cols=167 Identities=18% Similarity=0.067 Sum_probs=114.4
Q ss_pred chHHHHHHHHHHHHHHHcCCC-ccccCCCCCCC-cEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 558 PACTELEVLVMNWLGKALGLP-EEFLNCSPGPG-GGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 558 p~~t~lE~~v~~~la~llG~p-~~~~~~~~~~~-~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
.....+-+.+.+|+.+..|+. -+ .. ..++|+|++++..+++.+.. . +...|+
T Consensus 81 ~G~~~lr~aia~~~~~~~g~~~~~-------~~~~I~it~Gs~~al~~~~~~~~----~---------------~gd~Vl 134 (410)
T PRK06290 81 NGIQEFKEAAARYMEKVFGVKDID-------PVTEVIHSIGSKPALAMLPSCFI----N---------------PGDVTL 134 (410)
T ss_pred CCcHHHHHHHHHHHHHHcCCCcCC-------CcceEEEccCHHHHHHHHHHHhC----C---------------CCCEEE
Confidence 455677788888888877764 21 12 57889999998655554221 1 112455
Q ss_pred ecCCcchhHHHHHHhCCCceEEEecCC--CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc---HHHHHHHH
Q psy13453 636 TSDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN---LEELGPIC 710 (764)
Q Consensus 636 ~S~~aH~Sv~kAa~~lGl~v~~Vp~d~--~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp---l~eIa~i~ 710 (764)
+..-++......++..|.+++.||.++ ++.+|+++|++++.+. +-+|+.+..++.||.+-+ +++|.++|
T Consensus 135 v~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~------~k~i~l~nP~NPTG~v~s~e~l~~l~~la 208 (410)
T PRK06290 135 MTVPGYPVTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDIKEK------AKLLYLNYPNNPTGAVATKEFYEEVVDFA 208 (410)
T ss_pred EeCCCCccHHHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhccc------ceEEEEECCCCCCCcCCCHHHHHHHHHHH
Confidence 666666667778889999999999985 4678999999888542 337777778999999966 67788889
Q ss_pred HhcCCEEEEeccccccccccchhhhh--hcCCCcccEEEEcCCccCCCC
Q psy13453 711 QEYNIWLHVDAAYAGSALLLPEYAHL--KRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 711 ~~~glwLHVDaA~Gg~~l~~~~~r~~--l~gie~aDSit~d~HK~l~~P 757 (764)
++||+|+.+|-+|+....- ...... +.+....+-+.-++.|.++.|
T Consensus 209 ~~~~~~iI~DEaY~~~~~~-~~~~s~~~~~~~~~~~I~i~SfSK~~g~~ 256 (410)
T PRK06290 209 KENNIIVVQDAAYAALTFD-GKPLSFLSVPGAKEVGVEIHSLSKAYNMT 256 (410)
T ss_pred HHcCeEEEEecchhhceeC-CCCcChhcCCCccccEEEEeechhhcCCc
Confidence 9999999999999864321 111111 111222346677889988654
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.8e-06 Score=97.05 Aligned_cols=130 Identities=15% Similarity=0.133 Sum_probs=95.8
Q ss_pred cEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHH----HHHhCCCceEEEecCCCCc
Q psy13453 590 GGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEK----SAIIGDVPVRQLRSDDNGV 665 (764)
Q Consensus 590 ~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~k----Aa~~lGl~v~~Vp~d~~g~ 665 (764)
..+++++|+.|+..++.+. .. +...|+++...+.+... .+...|++++.++.+
T Consensus 81 ~~v~~sSG~aAi~~~l~al----l~---------------~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~---- 137 (395)
T PRK05967 81 GTILVPSGLAAVTVPFLGF----LS---------------PGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDPE---- 137 (395)
T ss_pred CEEEECcHHHHHHHHHHHh----cC---------------CCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeCCC----
Confidence 3578888888877666432 11 12357788888877654 346678888887643
Q ss_pred ccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccE
Q psy13453 666 LRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDS 745 (764)
Q Consensus 666 md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDS 745 (764)
+.++++++|++. +-+|+++..++.++.+.||++|+++|+++|+++.||.+|+.....-| +--| ||-
T Consensus 138 -~~e~l~~al~~~------TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p~~~~p----l~~G---aDi 203 (395)
T PRK05967 138 -IGAGIAKLMRPN------TKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPLYFRP----LDFG---VDI 203 (395)
T ss_pred -CHHHHHHhcCcC------ceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCccCceecCh----hHcC---CCE
Confidence 347788888654 33899999889999999999999999999999999999987543322 2223 599
Q ss_pred EEEcCCccCCC
Q psy13453 746 FDFNTHKWLLV 756 (764)
Q Consensus 746 it~d~HK~l~~ 756 (764)
+.-+..|+++.
T Consensus 204 vv~S~tKy~~G 214 (395)
T PRK05967 204 SIHAATKYPSG 214 (395)
T ss_pred EEEecccccCC
Confidence 99999998653
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.4e-06 Score=93.72 Aligned_cols=169 Identities=15% Similarity=0.107 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcch
Q psy13453 563 LEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNS 642 (764)
Q Consensus 563 lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~ 642 (764)
....+.+.+++++|.+ ..+|+++||+||..|+..+|.....+.+. ...++.++.+...-|-
T Consensus 74 ~~~~~~~~l~~~~~~~-----------~~~~~~SGs~A~e~al~~~~~~~~~~~~~--------~~~~~~vl~~~~~~Hg 134 (400)
T PTZ00125 74 VLGLAEKYITDLFGYD-----------KVLPMNSGAEAGETALKFARKWGYEVKGI--------PENQAKIIFCNGNFSG 134 (400)
T ss_pred HHHHHHHHHHhCCCCC-----------EEEEeCCcHHHHHHHHHHHHHHHHhccCC--------CCCCCeEEEECCCcCC
Confidence 4445555666666654 35799999999999999998653222100 0012345667777787
Q ss_pred hHHHHHHhCCCc------------eEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc----HHHH
Q psy13453 643 SVEKSAIIGDVP------------VRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN----LEEL 706 (764)
Q Consensus 643 Sv~kAa~~lGl~------------v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp----l~eI 706 (764)
+...+....+-. +..++. -|+++|++.++. ..+-+|+.....+.+|.+-| +++|
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~-----~~~~~v~~ep~~~~~G~~~~~~~~l~~l 204 (400)
T PTZ00125 135 RTIGACSASTDPKCYNNFGPFVPGFELVDY-----NDVEALEKLLQD-----PNVAAFIVEPIQGEAGVIVPDDGYLKQV 204 (400)
T ss_pred ccHHHHhhcCCcchhccCCCCCCCceEeCC-----CCHHHHHHHhCC-----CCeEEEEEcCccCCCCCccCCHHHHHHH
Confidence 766665544321 112221 389999998851 12446666555677888776 9999
Q ss_pred HHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCc-Cceee
Q psy13453 707 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNF-DCSAM 763 (764)
Q Consensus 707 a~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~-~~g~l 763 (764)
+++|++||++|++|.+|.+.......+.....++ ..|-++++ |+++.++ .+|++
T Consensus 205 ~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~-~pd~~~~s--K~l~~g~~~ig~v 259 (400)
T PTZ00125 205 YELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGV-KPDIVLLG--KALSGGLYPISAV 259 (400)
T ss_pred HHHHHHcCCEEEEeccccCCCccchhhHHHhcCC-CCCEEEEc--ccccCCCcCcEEE
Confidence 9999999999999999876321111111222344 45777765 9998765 56654
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.9e-06 Score=92.40 Aligned_cols=167 Identities=16% Similarity=-0.012 Sum_probs=114.8
Q ss_pred chHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEec
Q psy13453 558 PACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTS 637 (764)
Q Consensus 558 p~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S 637 (764)
+....+.+.+.+|+.+..|++-+ ....++|+|++++...++.+..+ +...|++.
T Consensus 65 ~g~~~lr~aia~~~~~~~~~~~~-------~~~I~it~G~~~~l~~~~~~~~~-------------------~gd~v~v~ 118 (368)
T PRK03317 65 RDAVALRADLAAYLTAQTGVGLT-------VENVWAANGSNEILQQLLQAFGG-------------------PGRTALGF 118 (368)
T ss_pred CchHHHHHHHHHHhhhhccCCCC-------hhhEEECCCHHHHHHHHHHHhcC-------------------CCCEEEEe
Confidence 44566777788888887776432 23578899999987666553311 11235556
Q ss_pred CCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEE
Q psy13453 638 DQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWL 717 (764)
Q Consensus 638 ~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwL 717 (764)
.-+......++...|.+++.+|.++++.+|+++|++++.+.. +-+|+.+..++.+|.+-+.+++.++|+.+++|+
T Consensus 119 ~P~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~-----~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~l 193 (368)
T PRK03317 119 VPSYSMHPIIARGTHTEWVEGPRAADFTLDVDAAVAAIAEHR-----PDVVFLTSPNNPTGTALPLDDVEAILDAAPGIV 193 (368)
T ss_pred CCChHHHHHHHHhcCCeeEEcccCCCCCCCHHHHHHHHhccC-----CCEEEEeCCCCCCCCCCCHHHHHHHHHHCCceE
Confidence 666666777788888888888877778999999999986421 225566778899999999999999999999999
Q ss_pred EEecccccccccc-chhhhhhcCCCcccEEE-EcCCccCCCC
Q psy13453 718 HVDAAYAGSALLL-PEYAHLKRGLEYVDSFD-FNTHKWLLVN 757 (764)
Q Consensus 718 HVDaA~Gg~~l~~-~~~r~~l~gie~aDSit-~d~HK~l~~P 757 (764)
++|-+|+.+..-. +........ .-+.|. -++.|.++.|
T Consensus 194 I~DE~y~~~~~~~~~~~~~~~~~--~~~~i~~~SfSK~~g~~ 233 (368)
T PRK03317 194 VVDEAYAEFRRSGTPSALTLLPE--YPRLVVSRTMSKAFAFA 233 (368)
T ss_pred EEeCCchhhcccCCcCHHHHHHh--CCCEEEEEechhhhccc
Confidence 9999998743111 111111111 113443 3999988754
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.6e-06 Score=91.40 Aligned_cols=170 Identities=14% Similarity=0.060 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
....++.+++++++|.+ ..+++.||+++|..++.++|...... + ..++-+++.+..-|
T Consensus 69 ~~~~~l~~~la~~~g~~-----------~~~~~~sg~~a~~~a~~~~~~~~~~~-~----------~~~~~vi~~~~~yh 126 (379)
T TIGR00707 69 EPQEELAEKLVEHSGAD-----------RVFFCNSGAEANEAALKLARKYTGDK-G----------KEKKKIIAFENSFH 126 (379)
T ss_pred HHHHHHHHHHHhhCCCC-----------EEEEeCCcHHHHHHHHHHHHHHhhcc-C----------CCCCeEEEECCCcC
Confidence 44556667888888764 36899999999999998876532210 0 00123555666666
Q ss_pred hhHHHHHHhCCCce---EEEecCCCCcc----cHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc----ccHHHHHHHH
Q psy13453 642 SSVEKSAIIGDVPV---RQLRSDDNGVL----RGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF----DNLEELGPIC 710 (764)
Q Consensus 642 ~Sv~kAa~~lGl~v---~~Vp~d~~g~m----d~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai----Dpl~eIa~i~ 710 (764)
.+...+....+... ...+...+... |+++|++.+.+. +-+|+.+..++.+|.+ +++++|.++|
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~ 200 (379)
T TIGR00707 127 GRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAIDDE------TAAVIVEPIQGEGGVNPASAEFLKALREIC 200 (379)
T ss_pred CccHHHHHhcCChhhhccCCCCCCCceeeCCCCHHHHHHHhhhC------eeEEEEEccccCCCCccCCHHHHHHHHHHH
Confidence 55444433322111 11222222222 899999988653 3355556555555543 4689999999
Q ss_pred HhcCCEEEEeccccccccccch-hhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 711 QEYNIWLHVDAAYAGSALLLPE-YAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 711 ~~~glwLHVDaA~Gg~~l~~~~-~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
++||+++++|.+|.+.. ...+ ......++ ..|.++ +.|.++..+.+|.+
T Consensus 201 ~~~~~~~i~De~~~~~~-~~g~~~~~~~~~~-~~d~~t--~sK~~~~G~riG~~ 250 (379)
T TIGR00707 201 KDKDALLIFDEVQTGIG-RTGKFFAYEHYGI-EPDIIT--LAKGLGGGVPIGAT 250 (379)
T ss_pred HHcCCEEEEeccccCCC-ccchhhhHHhcCC-CCCEEE--EcccccCCcccEEE
Confidence 99999999999997632 2211 11112233 245554 68999965666654
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.7e-06 Score=96.48 Aligned_cols=157 Identities=12% Similarity=0.051 Sum_probs=101.6
Q ss_pred cCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEE
Q psy13453 555 LSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVA 634 (764)
Q Consensus 555 ~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi 634 (764)
...|...++|+. ++++.|.. ..+.++||++|+..++. + +.. ...|
T Consensus 51 ~~~p~~~~le~~----lA~leg~~-----------~~v~~~sG~aAi~~~l~-~----l~~---------------GD~V 95 (364)
T PRK07269 51 TKNPTRAKLEET----LAAIESAD-----------YALATSSGMSAIVLAFS-V----FPV---------------GSKV 95 (364)
T ss_pred CCCccHHHHHHH----HHHHhCCC-----------eEEEeCCHHHHHHHHHH-H----hCC---------------CCEE
Confidence 356777778874 45555532 47899999999877763 2 111 1124
Q ss_pred EecCCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcC
Q psy13453 635 YTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYN 714 (764)
Q Consensus 635 ~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~g 714 (764)
+++...+-....-.....-.. .+.+ .+.+|+++++++|++.. -+|+....++.+|.+-|+++|+++|+++|
T Consensus 96 I~~~~~yg~~~~~~~~~~~~~-~~~~--~~~~d~~~l~~~i~~~T------klV~lesP~NPtg~~~di~~I~~la~~~g 166 (364)
T PRK07269 96 VAVRDLYGGSFRWFNQQEKEG-RFHF--TYANTEEELIAAIEEDT------DIVYIETPTNPLMVEFDIEKVAKLAHAKG 166 (364)
T ss_pred EEecCCcCchHHHHHHHHhcC-cEEE--EecCCHHHHHHhcCcCc------eEEEEECCCCCCCeeeCHHHHHHHHHHcC
Confidence 444433322111111100000 1111 23368999999987543 38888999999999999999999999999
Q ss_pred CEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcC--cee
Q psy13453 715 IWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD--CSA 762 (764)
Q Consensus 715 lwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~--~g~ 762 (764)
+++.||.||+......| . + ..||-++.|+||+++.+-+ .|+
T Consensus 167 i~vvvD~t~~~~~~~~p----l--~-~gaDivv~S~tK~l~g~~d~~gG~ 209 (364)
T PRK07269 167 AKVIVDNTFYSPIYQRP----I--E-LGADIVLHSATKYLSGHNDVLAGV 209 (364)
T ss_pred CEEEEECCCcccccCCc----h--h-hCCcEEEecCceeccCCCcccceE
Confidence 99999999876543222 1 1 1479999999999998765 454
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.9e-06 Score=93.54 Aligned_cols=167 Identities=14% Similarity=0.043 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcch
Q psy13453 563 LEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNS 642 (764)
Q Consensus 563 lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~ 642 (764)
...++.+.|+++.+.+ ..+|+++||+||..|+++||.......+.. ..++-+|.+...-|-
T Consensus 83 ~~~~l~~~l~~~~~~~-----------~~~~~~SGseA~e~Alk~a~~~~~~~~g~~--------~~r~~ii~~~~~~HG 143 (396)
T PRK04073 83 QLGPWYEKVAKLTGKD-----------MVLPMNTGAEAVETAIKAARRWAYDVKGVE--------PNKAEIIACEGNFHG 143 (396)
T ss_pred HHHHHHHHHHhcCCCC-----------eEEEcCChHHHHHHHHHHHHHHhhhccCCC--------CCCCEEEEECCCcCC
Confidence 3344556666666543 368999999999999999997632210000 001235566666776
Q ss_pred hHHHHHHhCCC------------ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc----HHHH
Q psy13453 643 SVEKSAIIGDV------------PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN----LEEL 706 (764)
Q Consensus 643 Sv~kAa~~lGl------------~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp----l~eI 706 (764)
+..-+..+.+- ++..+|.+ |+++|++.+.+. +.+|++....+.+|.+-| +++|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~i~~~------~~~viiep~~~~~G~~~~~~~~l~~l 212 (396)
T PRK04073 144 RTMAAVSLSSEEEYKRGFGPMLPGIKKIPYG-----DLEALKAAITPN------TAAFLVEPIQGEAGINIPPEGFLKAA 212 (396)
T ss_pred CCHHHHhhcCCcccccCCCCCCCCceEeCCC-----CHHHHHHhcccC------eEEEEEcCccCCCCCccCCHHHHHHH
Confidence 66556555432 12333322 688898887532 457777777788888754 8999
Q ss_pred HHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC-cCcee
Q psy13453 707 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSA 762 (764)
Q Consensus 707 a~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~ 762 (764)
.++|++||+++++|.+|.+.-.....+.....++ ..|-+++ .|.++.+ +..|.
T Consensus 213 ~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~-~pdi~~~--sK~lg~gg~~ig~ 266 (396)
T PRK04073 213 RELCKEENVLFIADEIQTGLGRTGKLFACDWDNV-TPDMYIL--GKALGGGVFPISC 266 (396)
T ss_pred HHHHHHcCCEEEEecchhCCCcCcHHHHhhhcCC-CCCEEEe--cccccCCCCcceE
Confidence 9999999999999999987422111111122344 3577765 5987765 44444
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.3e-06 Score=92.18 Aligned_cols=229 Identities=12% Similarity=0.095 Sum_probs=125.3
Q ss_pred ChhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCccccccCCCCChHHHHHH-HHH--Hhhccc-CccccCCc
Q psy13453 483 EPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGD-MLS--GAFGLI-GFSWLSSP 558 (764)
Q Consensus 483 ~p~~l~~~l~~~lP~~g~~~~~il~~l~~~i~~~~~~~~~P~~~~~~~~~~~~~~~lad-~l~--~~lN~n-~~~~~~sp 558 (764)
-|.+++..-+..+|+. .+-.++++++.++...+.. ...|++-=...--.++++.+ ++. .++... ....+.|.
T Consensus 31 IP~~i~~~~~~~lp~~-~sE~e~~r~~~~la~kN~~---~~~fiG~G~y~~~~P~~i~~~i~~~~ef~TaYtPYQpEisQ 106 (429)
T PF02347_consen 31 IPEEIRLKKPLNLPEP-LSEYELLRHLERLASKNKS---YTSFIGAGSYTHYVPAVIDRNILSRPEFYTAYTPYQPEISQ 106 (429)
T ss_dssp S-GGG-SS-----------HHHHHHHHHHHHTTS-----TTS---CTTT-----HHHHH-HHCCHHCCCS-STTSGGGBH
T ss_pred CCHhhcCCCCCCCCCC-CCHHHHHHHHHHHHhcCCC---CCccccccccCceeChhhcCccccChhhhccCCCCCcHHHH
Confidence 3555543334455543 7888999999997755443 33454443333445666666 332 122221 12234567
Q ss_pred hHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecC
Q psy13453 559 ACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSD 638 (764)
Q Consensus 559 ~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~ 638 (764)
..-+..-+.-.++++|.|++-. ...+..|+|.. -.|+.+|.+....+ +-.+++|+
T Consensus 107 G~Lq~lfe~Qs~i~eLTGmdva---------NaSlyd~atA~-aEa~~ma~r~~~~~---------------~~~vlv~~ 161 (429)
T PF02347_consen 107 GRLQALFEYQSMICELTGMDVA---------NASLYDGATAA-AEAMLMAVRATKRK---------------RNKVLVPE 161 (429)
T ss_dssp HHHHHHHHHHHHHHHHHTSSEE----------SEBSSCCHHH-HHHHHHHHHHHTT------------------EEEEET
T ss_pred HHHHHHHHHHHHHHHhhCCCcc---------CCCCCChhHHH-HHHHHHHHHhcccC---------------CcEEEEcC
Confidence 7777888889999999999862 23455666633 22333333221111 12588999
Q ss_pred CcchhHHHHHH----hCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcC
Q psy13453 639 QSNSSVEKSAI----IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYN 714 (764)
Q Consensus 639 ~aH~Sv~kAa~----~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~g 714 (764)
..|.......+ ..|+.++.+|+++++..| +.....|+.+..+| .|.|+++++|+++++++|
T Consensus 162 ~~hP~~~~v~~t~a~~~g~~iv~~~~~~~~~~d--------------~~~~a~v~vq~Pn~-~G~~ed~~~i~~~~h~~g 226 (429)
T PF02347_consen 162 SLHPQTRAVLRTYAAPLGIEIVEVPLDEDGTTD--------------DDDTAAVMVQNPNT-FGVFEDIKEIADIAHAAG 226 (429)
T ss_dssp TS-CHHHHHHHHHCCHCCEEEEEE-BBTTCSB---------------STTEEEEEEESS-T-TSB--THHHHHHHHHHTT
T ss_pred CcChhhHHHHHHhhhhCCeEEEEecccccCCcc--------------ccCeEEEEeecCCC-CceEeeHHHHHHHHHHcC
Confidence 99988766433 368899999999888888 22467999999986 699999999999999999
Q ss_pred CEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCcee
Q psy13453 715 IWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSA 762 (764)
Q Consensus 715 lwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~ 762 (764)
..+.+ ||--.+......-.. =.||-+ +.-||.++.|.+.|.
T Consensus 227 al~~~-~ad~~aL~~l~~Pge-----~GADI~-vg~~Q~fg~p~~~GG 267 (429)
T PF02347_consen 227 ALVIV-GADPNALGGLKSPGE-----YGADIV-VGEHQTFGIPMGFGG 267 (429)
T ss_dssp -EEEE-CGGCCGCCTC--GGG-----GT-SEE-EECCTTTT---CCC-
T ss_pred CEEEE-ecCHHHHhCcCChhh-----cCccEE-eeCCCCCcccCCCCC
Confidence 99887 764443322211011 146888 777999999998873
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.4e-05 Score=89.98 Aligned_cols=164 Identities=14% Similarity=0.123 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc-
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS- 640 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a- 640 (764)
....++.+.|++++|++. .+|+++|++||..|+..||.......+. ..++.+|++.+.+
T Consensus 79 ~~~~~l~~~l~~~~~~~~-----------~~~~~SGs~A~e~ai~~a~~~~~~~~~~---------~~~~~~i~~~~~~y 138 (401)
T TIGR01885 79 DVFGEFAEYVTKLFGYDK-----------VLPMNTGAEAVETAIKLARKWGYKVKGI---------PENQAIIVSAKGNF 138 (401)
T ss_pred HHHHHHHHHHHhhcCCCE-----------EEEeCccHHHHHHHHHHHHHHhhhhcCC---------CCCCCEEEEECCCc
Confidence 344455556777777643 5799999999999999998864221000 0113345555555
Q ss_pred chhHHHHHHhCCC------------ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc----HH
Q psy13453 641 NSSVEKSAIIGDV------------PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN----LE 704 (764)
Q Consensus 641 H~Sv~kAa~~lGl------------~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp----l~ 704 (764)
|-+..-+..+.|- ++..+|-+ |+++|++.|++. +....+|+.-.....+|.+-| |+
T Consensus 139 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~---~~~~~avi~E~v~~~~G~~~~~~~~l~ 210 (401)
T TIGR01885 139 HGRTLGAISMSTDPDSRTNFGPYVPGFKKIPYN-----NLEALEEALEDH---GPNVCAFIVEPIQGEAGVVVPDDGYLK 210 (401)
T ss_pred CcccHHHHhCcCCcccccccCCCCCCceEeCCC-----CHHHHHHHHHhc---CCCEEEEEEeCccCCCCCccCCHHHHH
Confidence 5565555555431 23333322 689999988643 223334444333344577765 99
Q ss_pred HHHHHHHhcCCEEEEeccccccccccchh-hhhhcCCCcccEEEEcCCccCCCC
Q psy13453 705 ELGPICQEYNIWLHVDAAYAGSALLLPEY-AHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 705 eIa~i~~~~glwLHVDaA~Gg~~l~~~~~-r~~l~gie~aDSit~d~HK~l~~P 757 (764)
+|+++|++||+++++|.+|.|.-. ..+. .....++ ..|.++++ |.++..
T Consensus 211 ~l~~l~~~~~~lli~DEv~~g~g~-~G~~~~~~~~~~-~~di~~~g--K~l~~g 260 (401)
T TIGR01885 211 KVRELCTKHNVLLIADEIQTGLGR-TGKLLCVDHENV-KPDIVLLG--KALSGG 260 (401)
T ss_pred HHHHHHHHcCCEEEEechhhCCCc-cchhhHHhhcCC-CCCEEEee--ccccCC
Confidence 999999999999999999865211 1111 1112344 46888775 987643
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.4e-06 Score=92.40 Aligned_cols=147 Identities=16% Similarity=0.160 Sum_probs=103.7
Q ss_pred cccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCC-CcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCc
Q psy13453 553 SWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGP-GGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631 (764)
Q Consensus 553 ~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~-~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~ 631 (764)
.|........+-+.+.+|+.+..|++... .. ...++|+|++++...++.+.. .. + ..
T Consensus 59 ~Y~~~~G~~~lr~aia~~~~~~~~~~~~~-----~~~~~i~it~Ga~~al~~~~~~l~----~~-----------g--d~ 116 (393)
T TIGR03538 59 TYPTTKGLPELRQAIARWLERRFDLPTGV-----DPERHVLPVNGTREALFAFAQAVI----NP-----------G--QA 116 (393)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcccC-----CCCceEEECCCcHHHHHHHHHHHc----CC-----------C--Cc
Confidence 34433445667778888888887776311 11 246789999998766655321 10 0 01
Q ss_pred eEEEecCCcchhHHHHHHhCCCceEEEecCCC--CcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc---HHHH
Q psy13453 632 LVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDN--GVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN---LEEL 706 (764)
Q Consensus 632 ~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~--g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp---l~eI 706 (764)
..|++.+-+.......+...|++++.||++++ +.+|+++|++++.+. +-+|+.+..++.||.+-+ +++|
T Consensus 117 ~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~------~k~i~l~~p~NPtG~~~s~~~~~~l 190 (393)
T TIGR03538 117 PLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVWRR------CQLLFVCSPGNPTGAVLSLDTLKKL 190 (393)
T ss_pred ceEEecCCCCcchHHHHHhcCCeEEEeeccccCCCCCCHHHHHHHHhhc------ceEEEEeCCCCCcCcccCHHHHHHH
Confidence 23556655666667778889999999999643 578999999988653 236666788999998855 8888
Q ss_pred HHHHHhcCCEEEEeccccccc
Q psy13453 707 GPICQEYNIWLHVDAAYAGSA 727 (764)
Q Consensus 707 a~i~~~~glwLHVDaA~Gg~~ 727 (764)
+++|++||+|+.+|.+|.-..
T Consensus 191 ~~~a~~~~~~ii~De~Y~~~~ 211 (393)
T TIGR03538 191 IELADQYGFIIASDECYSELY 211 (393)
T ss_pred HHHHHHCCEEEEECcchhhcc
Confidence 999999999999999998643
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.6e-06 Score=94.26 Aligned_cols=155 Identities=14% Similarity=-0.006 Sum_probs=105.8
Q ss_pred HHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHH
Q psy13453 566 LVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVE 645 (764)
Q Consensus 566 ~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~ 645 (764)
++.+.+++.+|.+++ ..++|+|+++++...+.+. ... ++..|++..-++....
T Consensus 64 ~Lr~aia~~~~~~~~---------~I~it~Gs~~~i~~~~~~~----~~~--------------g~d~vlv~~P~y~~y~ 116 (354)
T PRK04635 64 ELINAYSAYAGVAPE---------QILTSRGADEAIELLIRAF----CEP--------------GQDSIACFGPTYGMYA 116 (354)
T ss_pred HHHHHHHHHhCcCHH---------HEEEeCCHHHHHHHHHHHh----cCC--------------CCCeEEEcCCChHHHH
Confidence 345566667788764 6889999999876665432 110 1123556666666677
Q ss_pred HHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhc-CCEEEEecccc
Q psy13453 646 KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEY-NIWLHVDAAYA 724 (764)
Q Consensus 646 kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~-glwLHVDaA~G 724 (764)
..++..|++++.||+++++.+|++.+++ + + .+-+|+.+..++.||.+-+.+++.++++.. ++++.+|.||.
T Consensus 117 ~~~~~~g~~v~~v~~~~~~~~~~~~l~~-~-~------~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~ 188 (354)
T PRK04635 117 ISAETFNVGVKALPLTADYQLPLDYIEQ-L-D------GAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYI 188 (354)
T ss_pred HHHHHcCCEEEEEecCCCCCCCHHHHHh-c-c------CCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchH
Confidence 7788999999999998888999999873 3 2 234777889999999999999999998863 79999999997
Q ss_pred ccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 725 GSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 725 g~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
-+... ..........++. -+.-+++|+++.|
T Consensus 189 ~~~~~-~s~~~~~~~~~~~-iv~~S~SK~~~l~ 219 (354)
T PRK04635 189 EFCPE-YSVADLLASYPNL-VVLRTLSKAFALA 219 (354)
T ss_pred hhccC-cchHHHHhhCCCE-EEEechHHHhhhh
Confidence 54311 1111111111111 3567899998733
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=8.5e-06 Score=89.85 Aligned_cols=153 Identities=16% Similarity=0.066 Sum_probs=102.4
Q ss_pred HHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHH
Q psy13453 566 LVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVE 645 (764)
Q Consensus 566 ~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~ 645 (764)
.+++++++.+|.++ ...++|+|+++++..++. ..+ .+ +++ ..-+-....
T Consensus 62 ~lr~aia~~~~~~~---------~~I~it~Ga~~al~~~~~-----l~~---------------~~-viv-~~P~y~~~~ 110 (349)
T PRK07908 62 RARAAVAARHGRTP---------DEVLLLAGAAEGFALLAR-----LRP---------------RR-AAV-VHPSFTEPE 110 (349)
T ss_pred HHHHHHHHHhCcCh---------hhEEECCCHHHHHHHHHh-----cCC---------------Ce-EEE-eCCCChHHH
Confidence 45567777778765 368899999998765443 111 01 233 223333345
Q ss_pred HHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccc
Q psy13453 646 KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAG 725 (764)
Q Consensus 646 kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg 725 (764)
..++..|++++.+|+|+++.+|+++++ +. +-+|+.+..++.||.+-+.++|.++|+ ++.|+++|.+|+-
T Consensus 111 ~~~~~~G~~i~~v~~~~~~~~d~~~l~----~~------~~~i~l~np~NPTG~~~~~~~l~~l~~-~~~~iIvDe~y~~ 179 (349)
T PRK07908 111 AALRAAGIPVHRVVLDPPFRLDPAAVP----DD------ADLVVIGNPTNPTSVLHPAEQLLALRR-PGRILVVDEAFAD 179 (349)
T ss_pred HHHHHcCCEEEeeccCcccCcChhHhc----cC------CCEEEEcCCCCCCCCCcCHHHHHHHHh-cCCEEEEECcchh
Confidence 667789999999999877889998653 11 336777888999999999999999996 4889999999975
Q ss_pred cccccchhhhhhcCCCcccEEEE-cCCccCC-CCcCceee
Q psy13453 726 SALLLPEYAHLKRGLEYVDSFDF-NTHKWLL-VNFDCSAM 763 (764)
Q Consensus 726 ~~l~~~~~r~~l~gie~aDSit~-d~HK~l~-~P~~~g~l 763 (764)
.. .. +. ..+.....-+.+.+ +++|.++ ...-+|.+
T Consensus 180 ~~-~~-~~-~~l~~~~~~~~i~i~S~SK~~~l~GlRiG~~ 216 (349)
T PRK07908 180 AV-PG-EP-ESLAGDDLPGVLVLRSLTKTWSLAGLRVGYA 216 (349)
T ss_pred hc-cC-Cc-cccccccCCCEEEEeecccccCCccceeeee
Confidence 32 11 11 11111222357777 8999876 33445655
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.6e-05 Score=87.40 Aligned_cols=151 Identities=12% Similarity=0.042 Sum_probs=103.7
Q ss_pred HHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHH
Q psy13453 566 LVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVE 645 (764)
Q Consensus 566 ~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~ 645 (764)
.+.+++++.+|.+++ ..++|+|++++....+.+ ++ ...|++..-.+....
T Consensus 59 ~lr~~ia~~~~~~~~---------~I~~t~G~~~~l~~~~~~-----~~----------------gd~V~v~~P~y~~~~ 108 (337)
T PRK03967 59 PLREAIAEFYGLDAE---------NIAVGNGSDELISYLVKL-----FE----------------GKHIVITPPTFGMYS 108 (337)
T ss_pred HHHHHHHHHhCcCcc---------eEEEcCCHHHHHHHHHHH-----hC----------------CCeEEEeCCChHHHH
Confidence 345566666676553 578999999986543321 11 113566666776677
Q ss_pred HHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccc
Q psy13453 646 KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAG 725 (764)
Q Consensus 646 kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg 725 (764)
.+++..|++++.|+.++++.+|+++|++.+.+ .-+|+.+..++.||.+-+.++|.++|+ +++|+++|.+|..
T Consensus 109 ~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~-------~~~v~~~~P~NPtG~~~~~~~l~~i~~-~~~~ii~De~y~~ 180 (337)
T PRK03967 109 FYAKLNGIPVIDVPLKEDFTIDGERIAEKAKN-------ASAVFICSPNNPTGNLQPEEEILKVLE-TGKPVVLDEAYAE 180 (337)
T ss_pred HHHHHcCCeEEEeecCCCCCcCHHHHHHhccC-------CCEEEEeCCCCCCCCCCCHHHHHHHHh-cCCEEEEECchhh
Confidence 77888999999999988889999999876421 125556788999999999999999995 7999999999986
Q ss_pred cccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 726 SALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 726 ~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
+. .......+...++ --+..++-|.++.|
T Consensus 181 ~~--~~~~~~~~~~~~~-vi~l~S~SK~~~l~ 209 (337)
T PRK03967 181 FS--GKSLIGLIDEYPN-LILLRTFSKAFGLA 209 (337)
T ss_pred hc--ccchHHHHhhCCC-EEEEecchHhhcch
Confidence 42 1111111211111 13457899988754
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=98.36 E-value=8.5e-06 Score=93.29 Aligned_cols=174 Identities=17% Similarity=0.161 Sum_probs=114.8
Q ss_pred hHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecC
Q psy13453 559 ACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSD 638 (764)
Q Consensus 559 ~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~ 638 (764)
....+-+.+.+++.+.+|....+ .....++|+|+|+++.+.+.+. .. +.-.|++..
T Consensus 96 G~~~LR~aiA~~l~~~~~~~~~v-----~p~~Ivit~G~t~al~~l~~~l-----~~--------------pGD~Vlv~~ 151 (447)
T PLN02607 96 GLKSFRQAMASFMEQIRGGKARF-----DPDRIVLTAGATAANELLTFIL-----AD--------------PGDALLVPT 151 (447)
T ss_pred chHHHHHHHHHHHHHhcCCCCCc-----CHHHeEEcCChHHHHHHHHHHh-----CC--------------CCCEEEEcC
Confidence 33456666667777766532110 1236789999999875544321 11 112355555
Q ss_pred CcchhHHHHHH-hCCCceEEEecCC--CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc---HHHHHHHHHh
Q psy13453 639 QSNSSVEKSAI-IGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN---LEELGPICQE 712 (764)
Q Consensus 639 ~aH~Sv~kAa~-~lGl~v~~Vp~d~--~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp---l~eIa~i~~~ 712 (764)
-....+..... ..|++++.|++++ ++.+|+++|++++++..++|.++-+|+.+..++.+|.+=+ +++|.++|++
T Consensus 152 P~Y~~f~~~~~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~ 231 (447)
T PLN02607 152 PYYPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVR 231 (447)
T ss_pred CCCcchHHHHHhcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHH
Confidence 55555655555 4788999999873 4579999999999987777877777888899999999854 7888889999
Q ss_pred cCCEEEEeccccccccccchh---hhhhcCC------CcccEEEEcCCccCCCC
Q psy13453 713 YNIWLHVDAAYAGSALLLPEY---AHLKRGL------EYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 713 ~glwLHVDaA~Gg~~l~~~~~---r~~l~gi------e~aDSit~d~HK~l~~P 757 (764)
||+++++|-+|+....-.+.+ .....++ +++. +..++-|-++.|
T Consensus 232 ~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~-vi~s~SK~fg~~ 284 (447)
T PLN02607 232 KNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVH-IVYSLSKDLGLP 284 (447)
T ss_pred CCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEE-EEEcchhcCCCC
Confidence 999999999998754322111 1111111 1222 457889987644
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=1e-05 Score=91.20 Aligned_cols=172 Identities=10% Similarity=0.023 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
++.+.++.+++++..+++ ..+|+++|||||..|+.+||...... .. .++-+|.....-
T Consensus 77 ~~~~~~la~~l~~~~~~~-----------~v~f~~SGseA~e~Aik~ar~~~~~~--~~---------~r~~ii~~~~~y 134 (395)
T PRK03715 77 NEPMAKLAGLLTQHSCFD-----------KVFFANSGAEANEGAIKLARKWGRKH--KN---------GAYEIITFDHSF 134 (395)
T ss_pred CHHHHHHHHHHhhccCCC-----------EEEEeCCcHHHHHHHHHHHHHHhhcc--CC---------CCcEEEEECCCc
Confidence 567777788887765432 36899999999999999998653211 00 012356677788
Q ss_pred chhHHHHHHhCCCce---EEEecCCCC----cccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc----HHHHHHH
Q psy13453 641 NSSVEKSAIIGDVPV---RQLRSDDNG----VLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN----LEELGPI 709 (764)
Q Consensus 641 H~Sv~kAa~~lGl~v---~~Vp~d~~g----~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp----l~eIa~i 709 (764)
|-+..-++...|... ...|..... .-|+++|++.+.+. ..+|+..--....|.+-| +++|.++
T Consensus 135 HG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~------~aavi~Epv~~~gG~~~~~~~~l~~l~~l 208 (395)
T PRK03715 135 HGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLITDK------TVAVMLEPVQGEGGVIPATREFMQQLRAL 208 (395)
T ss_pred CCChHHHHhhcCCcccccCCCCCCCCceeeCCchHHHHHHHcCCC------ceEEEEeCCcCCCCCccCCHHHHHHHHHH
Confidence 888777777665321 111111111 24788888887532 446666666666677766 9999999
Q ss_pred HHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 710 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 710 ~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
|++||++|++|-++.|.-..-.-+....-|+ ..|-+|+. |.++.-+..|++
T Consensus 209 ~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv-~PDi~t~g--K~lg~G~p~~av 259 (395)
T PRK03715 209 TKQHGLLLIVDEVQTGCGRTGTLFAYELSGI-EPDIMTLG--KGIGGGVPLAAL 259 (395)
T ss_pred HHHcCCEEEEeccccCCCCCcchhhHhhcCC-CCceeeeh--hhhhCCcceEEE
Confidence 9999999999999987322111111112355 47877664 877764445544
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=98.35 E-value=2e-05 Score=90.91 Aligned_cols=172 Identities=13% Similarity=0.023 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
....++.+.|++++|++. ..|+.+|||||..|++.||.....+.+.. . ....++..+..-|
T Consensus 117 ~~~~~la~~L~~~~~~~~-----------~~f~~SGseA~e~AlklAr~~~~~~~g~~-------~-~~~~ii~~~~~yH 177 (474)
T PLN02624 117 DKFPEFAEYLTSMFGYDM-----------VLPMNTGAEGVETAIKLARKWGYEKKGIP-------K-NEAIIVSCCGCFH 177 (474)
T ss_pred HHHHHHHHHHHhhcCCCe-----------EEEeCChHHHHHHHHHHHHHHHHhhcCCC-------C-CCcEEEEECCCcC
Confidence 344445566666676543 57999999999999999998532221100 0 0122344444445
Q ss_pred hhHHHHHHhCCC------------ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc----HHH
Q psy13453 642 SSVEKSAIIGDV------------PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN----LEE 705 (764)
Q Consensus 642 ~Sv~kAa~~lGl------------~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp----l~e 705 (764)
-...-+..+.+- .+..+|-+ |++.|++.++. .+....+|+.......+|.+-| |++
T Consensus 178 G~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~---~~~~iaaiiiEpv~~~~G~v~p~~~~L~~ 249 (474)
T PLN02624 178 GRTLAAISMSCDNEATRGFGPLLPGHLKVDFG-----DLDALEKIFEE---DGDRIAAFLFEPIQGEAGVVIPPDGYLKA 249 (474)
T ss_pred CCCHHHhhcCCCccccccCCCCCCCceEeCCC-----CHHHHHHHHHh---CCCCEEEEEECCccCCCCCcCCCHHHHHH
Confidence 333333332211 12333322 68899998864 2234556777666677888766 999
Q ss_pred HHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 706 LGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 706 Ia~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
|+++|++||++|++|.+|.|.-.-..-+.....++ ..|-++++ |.++.. +.+|.+
T Consensus 250 l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~~i-~pDiv~ls--K~lggG~~pigav 305 (474)
T PLN02624 250 VRELCSKHNVLMIADEIQTGLARTGKMLACDWEEV-RPDVVILG--KALGGGVIPVSAV 305 (474)
T ss_pred HHHHHHHcCCEEEEeccccCcCcCcchhhHHhcCC-CCCEEEec--ccccCCCCcceee
Confidence 99999999999999999986321111112222355 46888874 877755 345443
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.3e-05 Score=91.19 Aligned_cols=164 Identities=15% Similarity=0.082 Sum_probs=109.4
Q ss_pred ccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceE
Q psy13453 554 WLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633 (764)
Q Consensus 554 ~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~v 633 (764)
|........+-+.+.+|+..-++-+ ...++|+|++++..+++.+..+ ++..
T Consensus 117 Y~~~~g~~~lr~~ia~~~~~~~~~~----------~~Iiit~G~~~al~~~~~~l~~-------------------pgd~ 167 (431)
T PRK15481 117 YGDAPVSPELHAWAARWLRDDCPVA----------FEIDLTSGAIDAIERLLCAHLL-------------------PGDS 167 (431)
T ss_pred cCCcCCCHHHHHHHHHHHhhccCCc----------CeEEEecCcHHHHHHHHHHhCC-------------------CCCE
Confidence 4333333445555666665433311 2578999999987766653211 1224
Q ss_pred EEecCCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEe-eccCCccccccHH---HHHHH
Q psy13453 634 AYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIAT-LGTTGTCAFDNLE---ELGPI 709 (764)
Q Consensus 634 i~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~Vvat-aGTT~~GaiDpl~---eIa~i 709 (764)
|++.+-++.....++...|++++.||+|++| +|+++|++++++. +-+++.+ ..++.||.+-+.+ +|.++
T Consensus 168 Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~g-~~~~~l~~~~~~~------~k~i~~~p~p~NPTG~~~s~~~~~~l~~l 240 (431)
T PRK15481 168 VAVEDPCFLSSINMLRYAGFSASPVSVDAEG-MQPEKLERALAQG------ARAVILTPRAHNPTGCSLSARRAAALRNL 240 (431)
T ss_pred EEEeCCCcHHHHHHHHHcCCeEEeeccCCCC-CCHHHHHHHHhcC------CCEEEECCCCCCCCCccCCHHHHHHHHHH
Confidence 6667777888889999999999999998766 9999999988642 2244444 7899999997765 89999
Q ss_pred HHhc-CCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCC
Q psy13453 710 CQEY-NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLL 755 (764)
Q Consensus 710 ~~~~-glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~ 755 (764)
|++| ++|+.+|-+|+-... .+ +...+.....---+.-++.|.++
T Consensus 241 a~~~~~~~ii~De~Y~~~~~-~~-~~~~~~~~~~~vi~~~SfSK~~~ 285 (431)
T PRK15481 241 LARYPQVLVIIDDHFALLSS-SP-YHSVIPQTTQRWALIRSVSKALG 285 (431)
T ss_pred HHhcCCceEEecCchhhhcc-CC-CCCCCcCCCCCEEEEeeeccccC
Confidence 9999 999999999986431 11 11111111111245668899888
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.9e-06 Score=91.10 Aligned_cols=169 Identities=14% Similarity=0.021 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchh
Q psy13453 564 EVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSS 643 (764)
Q Consensus 564 E~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~S 643 (764)
..++.+.|+++.+.+ ..+|++|||+||..|+++||...... +. ..++-++.....-|-+
T Consensus 75 ~~~la~~l~~~~~~~-----------~v~~~~sGseA~~~al~~ar~~~~~~-G~---------~~r~~vi~~~~~yhg~ 133 (389)
T PRK01278 75 QERLAERLVENSFAD-----------KVFFTNSGAEAVECAIKTARRYHYGK-GH---------PERYRIITFEGAFHGR 133 (389)
T ss_pred HHHHHHHHHhhCCCC-----------EEEEcCCcHHHHHHHHHHHHHHHHhc-CC---------CCCCEEEEECCCcCCC
Confidence 344555666665432 47899999999999999998764321 00 0112356667777766
Q ss_pred HHHHHHhCCCceEE---EecCCCCc----ccHHHHHHHHHHhhhcCCCceEEEEeeccCCccc----cccHHHHHHHHHh
Q psy13453 644 VEKSAIIGDVPVRQ---LRSDDNGV----LRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCA----FDNLEELGPICQE 712 (764)
Q Consensus 644 v~kAa~~lGl~v~~---Vp~d~~g~----md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Ga----iDpl~eIa~i~~~ 712 (764)
..-+....+..... .|..++.. .|+++|++.|+++ +.+|+..--....|. -+.+++|+++|++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~------~~avivep~~~~~G~~~~~~~~l~~l~~l~~~ 207 (389)
T PRK01278 134 TLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAITPN------TAAILIEPIQGEGGIRPAPDEFLKGLRQLCDE 207 (389)
T ss_pred cHHHHhccCChhhcccCCCCCCCceEeCCCCHHHHHHhhCCC------eEEEEEecccCCCCCcCCCHHHHHHHHHHHHH
Confidence 55554444432111 12112222 5899999988642 335555543444452 3699999999999
Q ss_pred cCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCcee
Q psy13453 713 YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSA 762 (764)
Q Consensus 713 ~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~ 762 (764)
||+||++|.+|.|......-+.....|+ ..|-+ .+.|.++.-+..|.
T Consensus 208 ~g~~lI~DEv~~g~g~~g~~~~~~~~~~-~pdi~--t~sK~l~~G~~ig~ 254 (389)
T PRK01278 208 NGLLLIFDEVQCGMGRTGKLFAHEWAGV-TPDIM--AVAKGIGGGFPLGA 254 (389)
T ss_pred cCCEEEEeccccCCCcCCcceeecccCC-CCCEE--EEehhccCCcceEE
Confidence 9999999999987422111011111244 24644 45687763333443
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.9e-06 Score=92.15 Aligned_cols=154 Identities=16% Similarity=0.102 Sum_probs=104.0
Q ss_pred cCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEE
Q psy13453 555 LSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVA 634 (764)
Q Consensus 555 ~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi 634 (764)
...|...++|+. ++++.|.+ ..+.+++|+.|+..++.+. .. +...|
T Consensus 61 ~~~P~~~~lE~~----la~leg~~-----------~av~~sSG~aAi~~al~al----l~---------------~GD~V 106 (384)
T PRK06434 61 WGNPTVQAFEEK----YAVLENAE-----------HALSFSSGMGAITSAILSL----IK---------------KGKRI 106 (384)
T ss_pred CCChhHHHHHHH----HHHHhCCC-----------cEEEeCCHHHHHHHHHHHH----hC---------------CCCEE
Confidence 467888888885 67776653 3578888998887777642 11 11235
Q ss_pred EecCC----cchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHH
Q psy13453 635 YTSDQ----SNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPIC 710 (764)
Q Consensus 635 ~~S~~----aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~ 710 (764)
+++.. ++..+...+...|+.++.+++++...++ ++.+ .+-+|....-++.++.+-||++|+++|
T Consensus 107 l~~~~~yg~t~~~~~~~~~~~Gi~v~fvd~~~~~~~~-------l~~~-----~tklv~~e~~snpt~~v~Di~~I~~la 174 (384)
T PRK06434 107 LSISDLYGQTFYFFNKVLKTLGIHVDYIDTDRLNSLD-------FDPS-----NYDLIYAESITNPTLKVPDIKNVSSFC 174 (384)
T ss_pred EEecCccchHHHHHHHHHHhcCcEEEEECCCChhhee-------ecCC-----CeeEEEEEcCCCCCceeecHHHHHHHH
Confidence 55544 2222335567789999999887433332 1111 233777778888899999999999999
Q ss_pred HhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcC--ceee
Q psy13453 711 QEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD--CSAM 763 (764)
Q Consensus 711 ~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~--~g~l 763 (764)
++++ +.||++|+.....-| . + ..||.++.|+||+++.+-+ -|++
T Consensus 175 ~~~~--lvVD~t~~s~~~~~p-l-----~-~gaDivv~S~tK~i~G~~d~~gG~v 220 (384)
T PRK06434 175 HEND--VIVDATFASPYNQNP-L-----D-LGADVVIHSATKYISGHSDVVMGVA 220 (384)
T ss_pred HHcC--eEEECCCCCcccCCc-h-----h-cCCCEEEeecccccCCCCCceEEEE
Confidence 9999 467999976533222 1 1 1479999999999998765 4543
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.7e-05 Score=89.29 Aligned_cols=164 Identities=15% Similarity=0.109 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcch
Q psy13453 563 LEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNS 642 (764)
Q Consensus 563 lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~ 642 (764)
...++.+.|+++++.+ ...|+++||+||..|+++||.....+.+ ..++.+|.....-|-
T Consensus 78 ~~~~la~~L~~~~~~~-----------~~~f~~SGseA~e~Alk~ar~~~~~~~~----------~~r~~ii~~~~~yHG 136 (397)
T TIGR03246 78 PVLRLAKKLVDATFAD-----------KVFFCNSGAEANEAALKLARRYALDKHG----------ADKSEIVAFKNSFHG 136 (397)
T ss_pred HHHHHHHHHHhhCCCC-----------EEEEeCCcHHHHHHHHHHHHHHHHhcCC----------CCCCEEEEECCCcCC
Confidence 3344555666666543 3589999999999999999876432100 012335666667787
Q ss_pred hHHHHHHhCCC------------ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc----ccHHHH
Q psy13453 643 SVEKSAIIGDV------------PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF----DNLEEL 706 (764)
Q Consensus 643 Sv~kAa~~lGl------------~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai----Dpl~eI 706 (764)
+..-+..+.|. ++..+|-+ |+++|++.|.+. +.+|+..--....|.+ +.+++|
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~------~aavi~Epi~~~~G~~~~~~~~l~~l 205 (397)
T TIGR03246 137 RTLFTVSVGGQPKYSQGFAPLPGGIKHAPYN-----DLAAAKALISDK------TCAVIVEPIQGEGGVVPADPAFLKGL 205 (397)
T ss_pred ccHHHHHhcCCcccccCCCCCCCceEEeCCC-----CHHHHHHHhccC------eEEEEEecccCCCCCcCCCHHHHHHH
Confidence 76555554432 22333322 689999988532 3456555444445533 579999
Q ss_pred HHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCce
Q psy13453 707 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCS 761 (764)
Q Consensus 707 a~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g 761 (764)
+++|++||++|++|-++.|.-....-+.....|+ ..|.+++ -|.++.-+..|
T Consensus 206 ~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv-~pDi~t~--~K~lggG~pig 257 (397)
T TIGR03246 206 RELCDRHNALLIFDEVQTGVGRTGELYAYMHYGV-TPDILTS--AKALGGGFPIG 257 (397)
T ss_pred HHHHHHcCCEEEEechhhcCCccccchhhhhcCC-CCCEEEe--ehhhhCCccee
Confidence 9999999999999999865421111111112245 4687754 67664323344
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.8e-06 Score=93.18 Aligned_cols=156 Identities=13% Similarity=0.003 Sum_probs=108.1
Q ss_pred HHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHH
Q psy13453 566 LVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVE 645 (764)
Q Consensus 566 ~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~ 645 (764)
++.+++++.+|.+++ ..++|+|+++++..++.+. .. ++..|++++-+.....
T Consensus 90 ~lr~~ia~~~~~~~~---------~I~~t~Ga~~~i~~~~~~~----~~---------------~gd~Vlv~~P~y~~y~ 141 (380)
T PLN03026 90 RLRAALAEDSGLESE---------NILVGCGADELIDLLMRCV----LD---------------PGDKIIDCPPTFGMYV 141 (380)
T ss_pred HHHHHHHHHhCcChh---------hEEEcCCHHHHHHHHHHHh----cC---------------CCCEEEEcCCChHHHH
Confidence 466778888887653 5789999999876655432 11 1123555555665666
Q ss_pred HHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccc
Q psy13453 646 KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAG 725 (764)
Q Consensus 646 kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg 725 (764)
..++..|++++.+|.++++.+|+++|++++... .+-+|+.+..++.||.+-+.+++.++++.. +|+++|.||.-
T Consensus 142 ~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~-----~~~~v~l~~P~NPTG~~~~~~~l~~l~~~~-~~vi~DeaY~~ 215 (380)
T PLN03026 142 FDAAVNGAEVIKVPRTPDFSLDVPRIVEAVETH-----KPKLLFLTSPNNPDGSIISDDDLLKILELP-ILVVLDEAYIE 215 (380)
T ss_pred HHHHHcCCEEEEeecCCCCCcCHHHHHHHHhcc-----CCcEEEEeCCCCCCCCCCCHHHHHHHHhcC-CEEEEECcchh
Confidence 677889999999999888899999999988421 134777778999999999999999999865 99999999975
Q ss_pred cccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 726 SALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 726 ~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
+.. .......+..- .-.-+.-++.|.++.|
T Consensus 216 ~~~-~~~~~~~~~~~-~~viv~~SfSK~~gla 245 (380)
T PLN03026 216 FST-QESRMKWVKKY-DNLIVLRTFSKRAGLA 245 (380)
T ss_pred hcC-CcchHHHHHhC-CCEEEEecchHhhcCc
Confidence 321 11111111111 1124567888988743
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.7e-05 Score=90.31 Aligned_cols=172 Identities=16% Similarity=0.053 Sum_probs=106.0
Q ss_pred cccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCce
Q psy13453 553 SWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKL 632 (764)
Q Consensus 553 ~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~ 632 (764)
.|.......++=+.+.+|+.+..|++-+ ....++|+|++++...++. . ... ++
T Consensus 68 ~Y~~~~G~~~LReaia~~~~~~~g~~~~-------~~~I~it~G~~~al~~~~~-l----~~~--------------Gd- 120 (433)
T PRK06855 68 GYCPTKGVLETREFLAELNNKRGGAQIT-------PDDIIFFNGLGDAIAKIYG-L----LRR--------------EA- 120 (433)
T ss_pred CCCCCCCCHHHHHHHHHHHHhccCCCCC-------HhHEEEcCcHHHHHHHHHH-h----cCC--------------CC-
Confidence 3444445556667777888887676432 2367899999998765542 1 110 12
Q ss_pred EEEecCCcchhHHHH-HHhCCCceEEEecCC--CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc---cHHHH
Q psy13453 633 VAYTSDQSNSSVEKS-AIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD---NLEEL 706 (764)
Q Consensus 633 vi~~S~~aH~Sv~kA-a~~lGl~v~~Vp~d~--~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD---pl~eI 706 (764)
.|++.+-+......+ ....|++++.+|+++ ++.+|+++|+++++... .+.+++.+..++.||.+= .+++|
T Consensus 121 ~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~----~~~~i~l~~P~NPTG~~~s~~~~~~l 196 (433)
T PRK06855 121 RVIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYNP----SIAGILLINPDNPTGAVYPKEILREI 196 (433)
T ss_pred eEEEeCCCCchHHHHHHHhcCCeEEEEecccccCCCCCHHHHHHHHhcCC----CceEEEEECCCCCCCcCCCHHHHHHH
Confidence 244444444333333 234588888889873 35799999999986321 133555567889999885 56667
Q ss_pred HHHHHhcCCEEEEecccccccccc---chhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 707 GPICQEYNIWLHVDAAYAGSALLL---PEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 707 a~i~~~~glwLHVDaA~Gg~~l~~---~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
+++|++||+|+..|-+|+....-. +........- + --..-++.|.++.|
T Consensus 197 ~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~-~-~I~~~S~SK~~~~p 248 (433)
T PRK06855 197 VDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDV-P-GIALKGISKELPWP 248 (433)
T ss_pred HHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcC-C-eEEEecCccccCCC
Confidence 788999999999999998753211 1111111110 1 13456788988644
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.1e-05 Score=90.29 Aligned_cols=172 Identities=15% Similarity=0.074 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
.....++.++++++.|.+ ..+||+||++||..|+.++|...... + ...+-++.....-
T Consensus 80 ~~~~~~la~~l~~~~~~~-----------~v~~~~gg~eA~~~al~~a~~~~~~~-~----------~~~~~ii~~~~~y 137 (396)
T PRK02627 80 IEPQEELAEKLVELSGMD-----------KVFFCNSGAEANEAAIKLARKYGHKK-G----------IEKPEIITAENSF 137 (396)
T ss_pred CHHHHHHHHHHHhhcCCC-----------EEEECCCcHHHHHHHHHHHHHHhccc-C----------CCCCeEEEECCCc
Confidence 456666778888887653 36899999999999999988653211 0 0112345556666
Q ss_pred chhHHHHHHhCCCceE---EEecCCCC----cccHHHHHHHHHHhhhcCCCceEEEEeeccCCccc----cccHHHHHHH
Q psy13453 641 NSSVEKSAIIGDVPVR---QLRSDDNG----VLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCA----FDNLEELGPI 709 (764)
Q Consensus 641 H~Sv~kAa~~lGl~v~---~Vp~d~~g----~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Ga----iDpl~eIa~i 709 (764)
|-...-+....+.... ..|...+. .-|+++|++++.+. +-+|+.....+.+|. -+.+++|+++
T Consensus 138 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~------~~~vii~p~~~~~G~~~~~~~~l~~l~~l 211 (396)
T PRK02627 138 HGRTLATLSATGQPKYQEGFEPLVEGFIYVPFNDIEALKAAITDK------TAAVMLEPIQGEGGVNPADKEYLQALREL 211 (396)
T ss_pred CcccHHHHHhcCCccccccCCCCCCCceEeCCCCHHHHHHhcCCC------eEEEEEecccCCCCCccCCHHHHHHHHHH
Confidence 7554444444332211 11222111 11899999988432 335555544444552 2469999999
Q ss_pred HHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 710 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 710 ~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
|++||++|++|.+|.+.......+.....|+ ..|-++ +-|.++..+..|.+
T Consensus 212 ~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~-~pdi~t--~sK~~~~G~rig~~ 262 (396)
T PRK02627 212 CDENGILLILDEVQTGMGRTGKLFAYQHYGI-EPDIMT--LAKGLGGGVPIGAV 262 (396)
T ss_pred HHHcCCEEEEechhcCCCccCceeeehhcCC-CCCEEE--EcchhhCCcccEEE
Confidence 9999999999999987422111011111233 346555 45888754455554
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.6e-05 Score=88.49 Aligned_cols=161 Identities=14% Similarity=0.121 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
..++.++.+++++..+.+ ..+|+++|++||..|+.+||... . ++-++......
T Consensus 70 ~~~~~~la~~l~~~~~~~-----------~~~~~~sG~~a~~~A~~~a~~~~--g--------------~~~vi~~~~~~ 122 (377)
T PRK02936 70 NSLQEEVASLLAENSAGD-----------LVFFCNSGAEANEAALKLARKHT--G--------------KSKIVTFEQSF 122 (377)
T ss_pred CHHHHHHHHHHHhcCCCC-----------EEEEeCCcHHHHHHHHHHHHHhc--C--------------CCeEEEECCCc
Confidence 567777778888776542 36899999999999999887541 0 12256666677
Q ss_pred chhHHHHHHhCCC------------ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc----ccHH
Q psy13453 641 NSSVEKSAIIGDV------------PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF----DNLE 704 (764)
Q Consensus 641 H~Sv~kAa~~lGl------------~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai----Dpl~ 704 (764)
|-+..-+....|. .+..+|.+ |+++|++.+.+. +.+|+........|.+ +.++
T Consensus 123 Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~~~~~------~~~ii~e~i~~~~G~~~~~~~~l~ 191 (377)
T PRK02936 123 HGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFN-----DIKALKEVMNEE------VAAVMLEVVQGEGGVIPADPAFLQ 191 (377)
T ss_pred CCCcHHhhhccCCccccccCCCCCCCceEeCCC-----CHHHHHHhccCC------eEEEEEecccCCCCCccCCHHHHH
Confidence 8666555554432 11222221 688999888543 2355554444444544 4599
Q ss_pred HHHHHHHhcCCEEEEeccccccccccch-hhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 705 ELGPICQEYNIWLHVDAAYAGSALLLPE-YAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 705 eIa~i~~~~glwLHVDaA~Gg~~l~~~~-~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
+|+++|++||+++++|-+|.+... ..+ +.....++ ..|-+ .+.|.++.-+..|++
T Consensus 192 ~l~~l~~~~~~~lI~DEv~~g~g~-~g~~~~~~~~~~-~~di~--t~sK~l~~G~~ig~v 247 (377)
T PRK02936 192 EVQTLCKKFGALLIIDEVQTGIGR-TGTLFAYEQFGL-DPDIV--TVAKGLGNGIPVGAM 247 (377)
T ss_pred HHHHHHHHcCCEEEEeccccCCCc-CchhhHHHhhCC-CCcEE--EEcccccCCCccEEE
Confidence 999999999999999999976322 111 11111244 34644 468988743345543
|
|
| >KOG2040|consensus | Back alignment and domain information |
|---|
Probab=98.29 E-value=7.7e-06 Score=93.09 Aligned_cols=174 Identities=16% Similarity=0.143 Sum_probs=131.1
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEe-CChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQ-STASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVA 634 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfT-sGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi 634 (764)
.+....+|-.++-.||+++-|++.- .|. .+|..+-..++.+-|.....+ ++ -.+-+.
T Consensus 576 QaqGY~~lf~~Le~~Lc~iTG~D~~-----------s~QPNsGA~GEYaGL~~IRaY~~~k-ge----------~hRnvC 633 (1001)
T KOG2040|consen 576 QAQGYQQLFTELEKDLCEITGFDSF-----------SLQPNSGAQGEYAGLRVIRAYLESK-GE----------GHRNVC 633 (1001)
T ss_pred HHhhHHHHHHHHHHHhheeecccce-----------eecCCCCcccchhhHHHHHHHHHhc-cC----------CcceeE
Confidence 3445667888888899999999751 243 244455566777666654332 11 124467
Q ss_pred EecCCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc-cHHHHHHHHHhc
Q psy13453 635 YTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD-NLEELGPICQEY 713 (764)
Q Consensus 635 ~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD-pl~eIa~i~~~~ 713 (764)
+++-.+|-....+|.+.|++|+.|.+|.+|.||..+|+++-++... .-.++.+|..+|. |.|. .|.++.++.++|
T Consensus 634 lIPvSAHGTNPASA~MagmkvvpV~~~~~G~id~~dLk~kaekh~~---~Laa~MvTYPST~-GvfE~~i~d~cd~iHeh 709 (1001)
T KOG2040|consen 634 LIPVSAHGTNPASAAMAGMKVVPVGCDANGNIDMVDLKAKAEKHKD---NLAALMVTYPSTH-GVFEEGIDDICDIIHEH 709 (1001)
T ss_pred EEeecccCCChhhHHhcCCEEEEeeccCCCCccHHHHHHHHHHhhh---hhheeEEeccccc-ccccccHHHHHHHHHhc
Confidence 8899999999999999999999999999999999999999877644 2457888999984 8885 799999999999
Q ss_pred CCEEEEeccccc-cccccchhhhhhcCCCcccEEEEcCCccCCCCcCce
Q psy13453 714 NIWLHVDAAYAG-SALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCS 761 (764)
Q Consensus 714 glwLHVDaA~Gg-~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g 761 (764)
|--+..|||-=- -.-+|. .|-=.+|---++.||.+..|.|-|
T Consensus 710 GGQVYlDGANMNAqVGlc~------pGd~GaDV~HLNLHKTFcIPHGGG 752 (1001)
T KOG2040|consen 710 GGQVYLDGANMNAQVGLCR------PGDIGADVCHLNLHKTFCIPHGGG 752 (1001)
T ss_pred CCEEEecCCCccceecccC------CccccccceeecccceeeecCCCC
Confidence 999999998322 111232 132367999999999999998866
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.9e-05 Score=85.77 Aligned_cols=226 Identities=11% Similarity=0.019 Sum_probs=139.8
Q ss_pred eeeeH--HHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-------
Q psy13453 20 LIYES--FKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS------- 90 (764)
Q Consensus 20 ~~YSv--~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~------- 90 (764)
.|+|. ...++.+|+.. +.||.+.+...|+++++++|++++. .++-+++-+-..|++|.+-|++++++
T Consensus 93 ~~~~~~~~~~~~~~g~~v---~~v~~~~~~~~~~~~l~~~l~~~~~-~~~k~v~~~~~~~~tG~~~~~~~i~~l~~~~~~ 168 (401)
T PLN02409 93 GQFSLLWIDQMQRLNFDV---DVVESPWGQGADLDILKSKLRQDTN-HKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQH 168 (401)
T ss_pred CchhHHHHHHHHHcCCce---EEEECCCCCCCCHHHHHHHHhhCcC-CCccEEEEEeecccccccCCHHHHHHHHhhhcc
Confidence 34444 57788889877 9999987667999999999986321 12224456777899999999987664
Q ss_pred CCCceecccc--------------------ccc-----c-ceeeeecCCCccccccc--cccccCCc------ccCCCC-
Q psy13453 91 NGPLKVGGVL--------------------RRV-----Y-SSCLVPRGQKSLRTTVL--FHFLFQHW------QIPLGR- 135 (764)
Q Consensus 91 ~~wlHVDa~l--------------------~~~-----y-~s~ll~rd~~~l~~~~s--~~~d~~d~------tle~SR- 135 (764)
++++.||+.. .++ . .++++.+++ .+..... ....+.+| .-.+++
T Consensus 169 g~~~vvD~v~s~g~~~id~~~~~~D~~~~s~~K~l~~P~G~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 247 (401)
T PLN02409 169 PALLLVDGVSSIGALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPK-ALEASKTAKSPRVFFDWADYLKFYKLGTYW 247 (401)
T ss_pred CcEEEEEcccccCCccccccccCccEEEEcCccccCcCCCcceeEECHH-HHHHHhcCCCCCeecCHHHHHHHHhcCCCC
Confidence 6788999942 111 1 123333321 1111000 00011111 011111
Q ss_pred cc-c----HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC-C--c-eeEEEEeecccccccccccc
Q psy13453 136 RF-R----ALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPP-S--M-GLVCFRLKVRFWDKLDNLFG 206 (764)
Q Consensus 136 r~-~----ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P-~--l-~iV~Fry~P~~~~~~~~~~~ 206 (764)
.+ - .+.+-.++..+-.+|+.++.++.-++++++.+.|++. +++++.+. . . .+++|++. ++
T Consensus 248 ~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~-g~~~~~~~~~~~s~~v~~~~~p-~~--------- 316 (401)
T PLN02409 248 PYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAW-GLKLCTKKPEWRSDTVTAVVVP-EG--------- 316 (401)
T ss_pred CCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcccceEEEeCC-CC---------
Confidence 11 1 2355667777778899999999999999999999986 89998752 2 3 45667652 21
Q ss_pred CccCCccHHHHHHHHHHHhcCcEEEEeceeC-CeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 207 TISFGDNDLNKAVYDRIIARKVIYIVKGSFQ-DRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 207 ~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~-g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
.+ ..++.++|.++-.+.+...... ....+|+..+. .++++++..+++.+.++..+
T Consensus 317 -----~~--~~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~~g-~~~~~~~~~~~~~~~~~l~~ 372 (401)
T PLN02409 317 -----ID--SAEIVKNAWKKYNLSLGLGLNKVAGKVFRIGHLG-NVNELQLLGALAGVEMVLKD 372 (401)
T ss_pred -----CC--HHHHHHHHHHhCCEEEEcCCCcccCCEEEEcCCC-CCCHHHHHHHHHHHHHHHHH
Confidence 11 1356666655433444433333 34689997666 56899999999999886544
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.5e-05 Score=84.98 Aligned_cols=175 Identities=17% Similarity=0.051 Sum_probs=111.5
Q ss_pred ccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCc--EEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCc
Q psy13453 554 WLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGG--GIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631 (764)
Q Consensus 554 ~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~--GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~ 631 (764)
|.......++=+.+.+|+.+.-+..-+ ... .++|+|++++...++.+.... . +.
T Consensus 65 Y~~~~G~~~lR~aia~~~~~~~~~~~~-------~~~i~v~iT~Ga~~al~~~~~~l~~~--~---------------pG 120 (396)
T PRK09257 65 YLPIEGLAAYRQAVQELLFGADSPALA-------AGRVATVQTPGGTGALRVGADFLKRA--F---------------PD 120 (396)
T ss_pred cCCCCCCHHHHHHHHHHhcCCCCcccc-------cCeEEEEecCCccHHHHHHHHHHHHh--C---------------CC
Confidence 444444445555566666443221100 122 489999999987776432100 0 12
Q ss_pred eEEEecCCcchhHHHHHHhCCCceEEEec-C-CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccHHHH
Q psy13453 632 LVAYTSDQSNSSVEKSAIIGDVPVRQLRS-D-DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLEEL 706 (764)
Q Consensus 632 ~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~-d-~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~eI 706 (764)
..|++.+-+......+++..|++++.+|. + +++.+|+++|++++++.. ....+++....++.||.+ +.+++|
T Consensus 121 d~Vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~---~~~~~~i~~~p~NPTG~~~s~~~~~~l 197 (396)
T PRK09257 121 AKVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQAP---AGDVVLLHGCCHNPTGADLTPEQWDEL 197 (396)
T ss_pred CeEEECCCCcccHHHHHHHcCCcEEEEeccccccCccCHHHHHHHHHhCC---CCCEEEEeCCCCCCCCCCCCHHHHHHH
Confidence 25677777777788889999999999997 3 357899999999887521 123566667788889988 567788
Q ss_pred HHHHHhcCCEEEEeccccccccccc-hhhh--hhcCC-CcccEEEEcCCccCCC
Q psy13453 707 GPICQEYNIWLHVDAAYAGSALLLP-EYAH--LKRGL-EYVDSFDFNTHKWLLV 756 (764)
Q Consensus 707 a~i~~~~glwLHVDaA~Gg~~l~~~-~~r~--~l~gi-e~aDSit~d~HK~l~~ 756 (764)
+++|++|++|+..|-+|.....-.. .... .+.+. +++ -+.-++.|.++.
T Consensus 198 ~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~v-i~i~SfSK~~~~ 250 (396)
T PRK09257 198 AELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLEL-LVASSFSKNFGL 250 (396)
T ss_pred HHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcE-EEEEEcCCcCcc
Confidence 8999999999999999987432101 1111 11111 121 345789998875
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.7e-05 Score=87.74 Aligned_cols=191 Identities=12% Similarity=0.063 Sum_probs=115.2
Q ss_pred HHHHHHHHHhhcccCccccC-CchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhh
Q psy13453 537 SIVGDMLSGAFGLIGFSWLS-SPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINH 615 (764)
Q Consensus 537 ~~lad~l~~~lN~n~~~~~~-sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~ 615 (764)
..+-++....++. .|.. .......|..+.+++.+.++..... .++...++|.|++++..+++.+.....+-.
T Consensus 110 ~~~~~~~~~~~~~---~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~----~~~~~V~it~Gat~al~~~~~~l~~~~ll~ 182 (521)
T TIGR03801 110 AFLYEMCDGIIGD---NYPVPDRMLPHSEKIVHQYLIQEMCGNKPP----PGEFDLFAVEGGTAAMCYIFDSLKANELLK 182 (521)
T ss_pred HHHHHHHHHhhcC---CCCCCCCCHHHHHHHHHHHHHhhccCCCCC----CCcCeEEEeCCHHHHHHHHHHHHhHhhcCC
Confidence 4455555554443 3533 3344556666667777765432110 011157899999999887766422211111
Q ss_pred hccCCCCCccccccCceEEEecCCcchhHHHHHHhC--CCceEEEecCC--C-----CcccHHHHHHHHHHhhhcCCCce
Q psy13453 616 WQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIG--DVPVRQLRSDD--N-----GVLRGDALLTAVKEDLAKGLIPC 686 (764)
Q Consensus 616 ~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~l--Gl~v~~Vp~d~--~-----g~md~~~Le~~I~~~~~~G~~p~ 686 (764)
+...|++..-........+.+. |+.++.|++++ + +.+|+++|++++.+. +-
T Consensus 183 --------------pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~~------~k 242 (521)
T TIGR03801 183 --------------KGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDPS------IK 242 (521)
T ss_pred --------------CCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcCCC------Cc
Confidence 1224555656666666666665 56677777753 2 789999999876543 33
Q ss_pred EEEEeeccCCcccccc---HHHHHHHHHhc--CCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 687 CLIATLGTTGTCAFDN---LEELGPICQEY--NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 687 ~VvataGTT~~GaiDp---l~eIa~i~~~~--glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
+|+++..++.||.+-+ +++|+++|++| ++|+.+|-+|+-..- .+...+.-...---+.-++.|.++.|
T Consensus 243 ai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~---~~~sl~~~~~~~vI~v~SfSK~fg~~ 315 (521)
T TIGR03801 243 ALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD---DFRSLFAELPYNTIGVYSFSKYFGAT 315 (521)
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc---cccchhhhCCCCEEEEEcchhhccCc
Confidence 6667788999999955 77788889987 899999999986431 22221111111113455788887654
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.9e-05 Score=89.03 Aligned_cols=204 Identities=14% Similarity=0.084 Sum_probs=126.6
Q ss_pred EEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCceecccc-------------
Q psy13453 39 RLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKVGGVL------------- 100 (764)
Q Consensus 39 ~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHVDa~l------------- 100 (764)
..++++++|.+|+++|++++++.+ .-+++. +...+|.+-|+.++++ ++++|||+..
T Consensus 159 ~~~~~~~~g~id~~~L~~~l~~~~----~~lvi~--~~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~ 232 (452)
T PTZ00094 159 LPYQVNEKGLIDYDKLEELAKAFR----PKLIIA--GASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSP 232 (452)
T ss_pred eecccCCCCCcCHHHHHHHHHHhC----CCEEEE--eCCCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCCC
Confidence 456678789999999999997531 113332 2346899999999886 8899999953
Q ss_pred ----------ccc-----cceeeeecCCCccccccccccc-cCCcccCCCC-cccHHHHHHHHHHccHHHHHHHHHHHHH
Q psy13453 101 ----------RRV-----YSSCLVPRGQKSLRTTVLFHFL-FQHWQIPLGR-RFRALKLWMTLRSYGLKGLQAYLRKHIS 163 (764)
Q Consensus 101 ----------~~~-----y~s~ll~rd~~~l~~~~s~~~d-~~d~tle~SR-r~~ALklWatL~~lG~eGy~~~i~~~i~ 163 (764)
.|+ .++++++++.. ... +....+ ....+++++= -.....+-++++.+-..++.++.++..+
T Consensus 233 ~~~~D~l~~S~hK~l~GP~Gg~l~~~~~~-~~~-l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~ 310 (452)
T PTZ00094 233 FPYADVVTTTTHKSLRGPRSGLIFYRKKV-KPD-IENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLK 310 (452)
T ss_pred CCCCcEEEcCCccCCCCCCceEEEEeccc-chH-HHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 111 12344443321 100 000000 0111234443 3344567788888877788888899999
Q ss_pred HHHHHHHHHhcCCCeEEeCCC---CceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEeceeC---
Q psy13453 164 LAKKFADLVEQDDRFELVCPP---SMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQ--- 237 (764)
Q Consensus 164 lA~~l~~~I~~~p~~ell~~P---~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~--- 237 (764)
++++|++.|++. +++++.+. ...+|.|... +.+ ...+...|.+.|.. ++...+.
T Consensus 311 l~~~l~~~L~~~-g~~v~~~~~~~~~~~v~~~~~----------------~~~--~~~~~~~L~~~gI~-vs~~~~p~~~ 370 (452)
T PTZ00094 311 NAKALAAALEKR-GYDLVTGGTDNHLVLVDLRPF----------------GIT--GSKMEKLLDAVNIS-VNKNTIPGDK 370 (452)
T ss_pred HHHHHHHHHHhC-CcEEecCCCCCceEeecCCcC----------------CCC--HHHHHHHHHHCCcE-EecccCCCCC
Confidence 999999999885 89988532 2345555321 111 14667777666764 3333222
Q ss_pred ---CeeEEEEeccCCCC---CHHHHHHHHHHHHHHHHHH
Q psy13453 238 ---DRLFMRFAICSSQT---EESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 238 ---g~~~LRi~v~np~T---t~e~i~~~l~~l~~~~~~i 270 (764)
....+|+.+....| ++++++.+++.|.++....
T Consensus 371 ~~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~~~~ 409 (452)
T PTZ00094 371 SALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAVKLA 409 (452)
T ss_pred cCCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 23689996543333 5999999999998887653
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.7e-05 Score=88.51 Aligned_cols=155 Identities=16% Similarity=0.070 Sum_probs=103.0
Q ss_pred HHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHH
Q psy13453 566 LVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVE 645 (764)
Q Consensus 566 ~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~ 645 (764)
++.+.+++.+|.+++ ..++|+|+++++..++.+.. . +...|++.+-+.....
T Consensus 68 ~Lr~aia~~~~~~~~---------~I~vt~Gs~e~i~~~~~~l~----~---------------~gd~vlv~~P~y~~~~ 119 (366)
T PRK01533 68 TLRQTIANKLHVKME---------QVLCGSGLDEVIQIISRAVL----K---------------AGDNIVTAGATFPQYR 119 (366)
T ss_pred HHHHHHHHHhCCCcc---------eEEECCCHHHHHHHHHHHhc----C---------------CCCEEEEcCCcHHHHH
Confidence 355666777787663 67899999998776655431 1 1224677777788888
Q ss_pred HHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHH---HhcCCEEEEecc
Q psy13453 646 KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPIC---QEYNIWLHVDAA 722 (764)
Q Consensus 646 kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~---~~~glwLHVDaA 722 (764)
.++...|++++.||.+ ++.+|+++|++++.+. +-+|+.+..++.||.+-+.+++.+++ ++++ ++++|-+
T Consensus 120 ~~~~~~g~~v~~v~~~-~~~~d~~~l~~~~~~~------~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~ 191 (366)
T PRK01533 120 HHAIIEGCEVKEVALN-NGVYDLDEISSVVDND------TKIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEA 191 (366)
T ss_pred HHHHHcCCEEEEeecC-CCCcCHHHHHHHhCcC------CcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEcc
Confidence 8899999999999996 5679999999988543 23666778999999997766665554 4555 6778999
Q ss_pred ccccccccchhhhhhcCCCcc--cEEEEcCCccCCCC
Q psy13453 723 YAGSALLLPEYAHLKRGLEYV--DSFDFNTHKWLLVN 757 (764)
Q Consensus 723 ~Gg~~l~~~~~r~~l~gie~a--DSit~d~HK~l~~P 757 (764)
|..+.. .......+..+... --+.-++-|.++.|
T Consensus 192 y~~~~~-~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~ 227 (366)
T PRK01533 192 YYEYVT-AKDFPETLPLLEKHKNILVLRTFSKAYGLA 227 (366)
T ss_pred HHHhhc-cccCcchhHHhccCCCEEEEeCchHHhcCh
Confidence 974321 11111111111111 24556888887744
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.1e-05 Score=84.36 Aligned_cols=214 Identities=12% Similarity=-0.004 Sum_probs=133.7
Q ss_pred HHhhcCC-CCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc---CCCceeccc---
Q psy13453 27 ATHSLSG-TPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS---NGPLKVGGV--- 99 (764)
Q Consensus 27 Aa~~LGl-~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~---~~wlHVDa~--- 99 (764)
+++.+|+ .. +.++++.....|+++++. +..+.-|.-+|.+|.+-||++|++ ++++.|||.
T Consensus 109 ~~~~~g~~~v---~~~~~~~g~~~d~~~i~~----------~~~V~~~h~~t~tG~~~pi~~I~~~~~g~~~vVDa~qs~ 175 (378)
T PRK03080 109 VVKQLKLEDP---RVLEADYGSLPDLSAVDF----------DRDVVFTWNGTTTGVRVPVARWIGADREGLTICDATSAA 175 (378)
T ss_pred HHhhcCCCCc---eEeccCCCCCCCHhhcCC----------CCCEEEEecCCccceeccchhhccccCCCeEEEeccccc
Confidence 3456787 55 888888777888776332 123456888999999999999987 678899993
Q ss_pred --------------------cccccc-eeeeecCCCccccc--ccc---ccccCCcc---------cCCCC-c-ccHH--
Q psy13453 100 --------------------LRRVYS-SCLVPRGQKSLRTT--VLF---HFLFQHWQ---------IPLGR-R-FRAL-- 140 (764)
Q Consensus 100 --------------------l~~~y~-s~ll~rd~~~l~~~--~s~---~~d~~d~t---------le~SR-r-~~AL-- 140 (764)
+..+.+ +++.++.+ .+... ... ...|.++. .+++. . ....
T Consensus 176 G~~pidv~~iD~~~~s~~K~l~~P~G~g~l~v~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i 254 (378)
T PRK03080 176 FALPLDWSKLDVYTFSWQKVLGGEGGHGMAILSPR-AVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTV 254 (378)
T ss_pred ccCCCCHHHCcEEEEehhhhCCCCCceEEEEECHH-HHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHH
Confidence 122232 34444432 21110 000 00111111 12211 1 1122
Q ss_pred -HHHHHHHHccHH-HHHHHHHHHHHHHHHHHHHHhcCCCeEEeCC-CC---ceeEEEEeeccccccccccccCccCCccH
Q psy13453 141 -KLWMTLRSYGLK-GLQAYLRKHISLAKKFADLVEQDDRFELVCP-PS---MGLVCFRLKVRFWDKLDNLFGTISFGDND 214 (764)
Q Consensus 141 -klWatL~~lG~e-Gy~~~i~~~i~lA~~l~~~I~~~p~~ell~~-P~---l~iV~Fry~P~~~~~~~~~~~~~~~~~d~ 214 (764)
.+-++|+++=.+ |+.++.++..++++++.+.+++.++++++.. |. ..+++|++.. ....
T Consensus 255 ~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~---------------~~~~ 319 (378)
T PRK03080 255 EDYLDQLDWANSIGGLDALIARTAANASVLYDWAEKTPWATPLVADPATRSNTSVTLDFVD---------------AQAA 319 (378)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCccEEEEEcCC---------------chHH
Confidence 335688888777 8999999999999999999999988888752 32 2588897531 0001
Q ss_pred HHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 215 LNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 215 ~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
.+.++..+|.++|..............+|++ .+..+++++++.+++.|+++.+++
T Consensus 320 ~~~~~~~~l~~~~i~v~~g~~~~~~~~vRis-~~~~~t~~di~~l~~al~~~~~~~ 374 (378)
T PRK03080 320 VDAAAVAKLLRENGAVDIEPYRDAPNGLRIW-CGPTVEPADVEALTPWLDWAFERL 374 (378)
T ss_pred HHHHHHHHHHHcCCeeccccccCCCCcEEEe-cCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3345666676666543322111123579998 667888999999999999876654
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.7e-05 Score=84.28 Aligned_cols=216 Identities=12% Similarity=0.113 Sum_probs=129.5
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCC-CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCC
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPD-SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGP 93 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~-~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~w 93 (764)
.|.+...++...|+.. +.+++++ ++.+|+++|+++|+++ +-+++.+ .++|.+.|++++.+ +++
T Consensus 67 ~~~~~~~~~~~~g~~~---~~~~~~~~~~~~d~~~l~~~i~~~-----~~~v~~~---~~~G~~~~~~~i~~l~~~~~i~ 135 (352)
T cd00616 67 TFVATANAILLLGATP---VFVDIDPDTYNIDPELIEAAITPR-----TKAIIPV---HLYGNPADMDAIMAIAKRHGLP 135 (352)
T ss_pred chHHHHHHHHHcCCeE---EEEecCCCcCCcCHHHHHHhcCcC-----CeEEEEE---CCCCCcCCHHHHHHHHHHcCCe
Confidence 5778888999999877 9999987 8999999999988542 2233332 35798999998775 889
Q ss_pred ceecccccc--cc--------c------------------eeeeecCCCccccc--ccc-c--cc---cCCcccCCCCcc
Q psy13453 94 LKVGGVLRR--VY--------S------------------SCLVPRGQKSLRTT--VLF-H--FL---FQHWQIPLGRRF 137 (764)
Q Consensus 94 lHVDa~l~~--~y--------~------------------s~ll~rd~~~l~~~--~s~-~--~d---~~d~tle~SRr~ 137 (764)
+++|++... .+ + ++++.++++..... +.. . .+ +...++..+-+.
T Consensus 136 li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~~K~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (352)
T cd00616 136 VIEDAAQALGATYKGRKVGTFGDAGAFSFHPTKNLTTGEGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRL 215 (352)
T ss_pred EEEECCCCCCCeECCEEcccCcceeEEcCCCCCCCcccCceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCc
Confidence 999996421 11 0 11111111100000 000 0 00 000011111123
Q ss_pred cHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC-----ceeEEEEeeccccccccccccCccCCc
Q psy13453 138 RALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS-----MGLVCFRLKVRFWDKLDNLFGTISFGD 212 (764)
Q Consensus 138 ~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~-----l~iV~Fry~P~~~~~~~~~~~~~~~~~ 212 (764)
..+..++.+ ...+++.++.++..++++++.+.|++.++++++.++. ..+++|++.+.. ..
T Consensus 216 ~~~~aa~~~--~~l~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~ 280 (352)
T cd00616 216 SEIQAAIGL--AQLEKLDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPEA-------------GE 280 (352)
T ss_pred CHHHHHHHH--HHHHhhHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCcC-------------CC
Confidence 333333333 2456778888999999999999999999999887543 356777653100 00
Q ss_pred cHHHHHHHHHHHhcCcEEEE-e-ceeC--------------C-------eeEEEEeccCCCCCHHHHHHHHHHHH
Q psy13453 213 NDLNKAVYDRIIARKVIYIV-K-GSFQ--------------D-------RLFMRFAICSSQTEESDVQLGWNEIR 264 (764)
Q Consensus 213 d~~n~~L~~~L~~~G~~~vs-~-t~l~--------------g-------~~~LRi~v~np~Tt~e~i~~~l~~l~ 264 (764)
-...+.+.|.++|...-. . ...+ . ...+|+ -+++.+++++++.+++.|+
T Consensus 281 --~~~~v~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l-~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 281 --SRDELIEALKEAGIETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSL-PLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred --CHHHHHHHHHHCCCCeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeEEc-cCCCCCCHHHHHHHHHHhC
Confidence 124678888888862211 0 1110 0 147887 4677889999999988763
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=98.18 E-value=8e-05 Score=85.22 Aligned_cols=170 Identities=12% Similarity=0.021 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHH--hhhhccCCCCCccccccCceEEEecCC
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKM--INHWQSKNPSLTENDIRNKLVAYTSDQ 639 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~--~~~~~~~~~~~~~~~~~~~~vi~~S~~ 639 (764)
.+..++=+.|++++|.+. .++.++|..||+.++.+.-... +..... +....+.+||+.+.
T Consensus 147 ~~h~~LE~~LA~f~g~e~-----------all~sSGy~AN~~~i~aL~~~~~~~~~~~~-------~~~~~~d~i~~D~~ 208 (476)
T PLN02955 147 TYHRLLESSLADLKKKED-----------CLVCPTGFAANMAAMVAIGSVASLLAASGK-------PLKNEKVAIFSDAL 208 (476)
T ss_pred HHHHHHHHHHHHHHCCCc-----------EEEECChHHHHHHHHHHHhhcccccccccc-------ccCCCCcEEEEecc
Confidence 344555567888888765 4788889999988776531110 000000 00112457899999
Q ss_pred cchhHHHHHHhC----CCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCC
Q psy13453 640 SNSSVEKSAIIG----DVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNI 715 (764)
Q Consensus 640 aH~Sv~kAa~~l----Gl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~gl 715 (764)
.|.|+..++++. +..+...+ .-|+++|++.|++... . ..+|+.-.--...|.+-|+++|.++|++||+
T Consensus 209 ~HaSI~dG~~ls~~~~~a~~~~f~-----HND~~~Le~~L~~~~~--~-~~~Vv~EgV~SmdGdiapL~eL~~L~~~~ga 280 (476)
T PLN02955 209 NHASIIDGVRLAERQGNVEVFVYR-----HCDMYHLNSLLSSCKM--K-RKVVVTDSLFSMDGDFAPMEELSQLRKKYGF 280 (476)
T ss_pred chHHHHHHHHhccccCCceEEEeC-----CCCHHHHHHHHHhCCC--C-ceEEEEeCCCCCCCCcCCHHHHHHHHHHcCc
Confidence 999999999987 34555444 2468999999976532 2 2344444335667999999999999999999
Q ss_pred EEEEeccccccccccchhhhh--hcCC-CcccEEEEcCCccCCCCc
Q psy13453 716 WLHVDAAYAGSALLLPEYAHL--KRGL-EYVDSFDFNTHKWLLVNF 758 (764)
Q Consensus 716 wLHVDaA~Gg~~l~~~~~r~~--l~gi-e~aDSit~d~HK~l~~P~ 758 (764)
+|.||-||+.+.+- +..+.. .-|+ ...|-++.++-|.++..-
T Consensus 281 ~LiVDEAH~~Gv~G-~~G~G~~e~~g~~~di~ii~~TLsKA~G~~G 325 (476)
T PLN02955 281 LLVIDDAHGTFVCG-ENGGGVAEEFNCEADVDLCVGTLSKAAGCHG 325 (476)
T ss_pred EEEEcccccCceec-CCCCcHHHHhCCCCCCcEEEEeCccchhccC
Confidence 99999999976542 211111 1122 356899999999987553
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.17 E-value=7.5e-05 Score=84.21 Aligned_cols=130 Identities=12% Similarity=0.139 Sum_probs=84.1
Q ss_pred HHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhH
Q psy13453 565 VLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV 644 (764)
Q Consensus 565 ~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv 644 (764)
.++.+.|+++.+.+ ...|+.+||+||..|+.+||....... +..++.+|.....-|-+.
T Consensus 85 ~~l~~~l~~~~~~~-----------~~~~~~sGseA~e~a~klar~~~~~~~----------~~~~~~ii~~~~~~HG~~ 143 (403)
T PRK05093 85 LRLAKKLIDATFAE-----------RVFFANSGAEANEAAFKLARRYACDRH----------GPEKTEIIAFHNSFHGRT 143 (403)
T ss_pred HHHHHHHHhhCCCC-----------EEEEeCchHHHHHHHHHHHHHHHhhcC----------CCCCCeEEEEcCCcCCch
Confidence 45556667766543 358999999999999999987643211 011234667777778765
Q ss_pred HHHHHhCCC------------ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc----ccHHHHHH
Q psy13453 645 EKSAIIGDV------------PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF----DNLEELGP 708 (764)
Q Consensus 645 ~kAa~~lGl------------~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai----Dpl~eIa~ 708 (764)
.-+..+.|- ++..+|-+ |++++++.+.+. +.+|+..-.....|.+ +.+++|++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~------~aaiiiep~~~~gg~~~~~~~~l~~l~~ 212 (403)
T PRK05093 144 LFTVSVGGQPKYSDGFGPKPADITHVPFN-----DLAAVKAVIDDH------TCAVVVEPIQGEGGVIPATPEFLQGLRE 212 (403)
T ss_pred hhhHhhcCChhhhhcCCCCCCCcEEeCCC-----CHHHHHHHhcCC------eEEEEEecccCCCCCccCCHHHHHHHHH
Confidence 544443221 22333322 688898888532 3355555333333433 45999999
Q ss_pred HHHhcCCEEEEecccccc
Q psy13453 709 ICQEYNIWLHVDAAYAGS 726 (764)
Q Consensus 709 i~~~~glwLHVDaA~Gg~ 726 (764)
+|++||+|+++|-+|.+.
T Consensus 213 l~~~~g~~lI~DEv~~g~ 230 (403)
T PRK05093 213 LCDQHNALLIFDEVQTGM 230 (403)
T ss_pred HHHHcCCEEEEechhhCC
Confidence 999999999999999864
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.6e-05 Score=85.25 Aligned_cols=154 Identities=14% Similarity=0.097 Sum_probs=100.3
Q ss_pred HHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHH
Q psy13453 566 LVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVE 645 (764)
Q Consensus 566 ~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~ 645 (764)
++++.+++.++.++ ...++|+|++++...++.+. .. + .|++.+-+.....
T Consensus 58 ~lr~~ia~~~~~~~---------~~i~it~Ga~~~l~~~~~~~-----~~---------------~-~v~i~~P~y~~~~ 107 (354)
T PRK06358 58 ELRKRIASFEQLDL---------ENVILGNGATELIFNIVKVT-----KP---------------K-KVLILAPTFAEYE 107 (354)
T ss_pred HHHHHHHHHhCCCh---------hhEEECCCHHHHHHHHHHHh-----CC---------------C-cEEEecCChHHHH
Confidence 45556666667765 36789999999876655431 10 1 2445555556667
Q ss_pred HHHHhCCCceEEEecCCC--CcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc---HHHHHHHHHhcCCEEEEe
Q psy13453 646 KSAIIGDVPVRQLRSDDN--GVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN---LEELGPICQEYNIWLHVD 720 (764)
Q Consensus 646 kAa~~lGl~v~~Vp~d~~--g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp---l~eIa~i~~~~glwLHVD 720 (764)
.++...|.+++.+|++.+ +.+| +++.+.+.+. +-+|+.+..++.||.+-+ +.+|.++|++|++|+.+|
T Consensus 108 ~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~~~------~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~D 180 (354)
T PRK06358 108 RALKAFDAEIEYAELTEETNFAAN-EIVLEEIKEE------IDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIID 180 (354)
T ss_pred HHHHHcCCeeEEEeCccccCCCcc-HHHHHhhccC------CCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEe
Confidence 778889999999998743 4788 6655555321 446667788999998864 788888899999999999
Q ss_pred ccccccccccchhhhhhcCCCccc--EEEEcCCccCCCC
Q psy13453 721 AAYAGSALLLPEYAHLKRGLEYVD--SFDFNTHKWLLVN 757 (764)
Q Consensus 721 aA~Gg~~l~~~~~r~~l~gie~aD--Sit~d~HK~l~~P 757 (764)
.+|.-+..- +.....+..+..-+ -+.-++-|.++.|
T Consensus 181 e~Y~~~~~~-~~~~~~~~~~~~~~~vi~~~S~SK~~gl~ 218 (354)
T PRK06358 181 EAFMDFLEE-NETISMINYLENFKNLIIIRAFTKFFAIP 218 (354)
T ss_pred CcccccCCC-ccchhHHHhccCCCCEEEEEechhhccCc
Confidence 999754421 11111111121111 3456888988733
|
|
| >KOG0257|consensus | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.9e-05 Score=83.73 Aligned_cols=171 Identities=11% Similarity=0.025 Sum_probs=120.5
Q ss_pred ccccCCCCChHHHHHHHHHHhhccc-CccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHH
Q psy13453 526 NAYFPTGSSYPSIVGDMLSGAFGLI-GFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVS 604 (764)
Q Consensus 526 ~~~~~~~~~~~~~lad~l~~~lN~n-~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~A 604 (764)
++.-...-..|..+.+.+.....-. ...|.-.-...++-..+.+.+++++|-... ...+..+|.|+.++...+
T Consensus 36 LgqGfp~~~~P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~------~~~eVlVT~GA~~ai~~~ 109 (420)
T KOG0257|consen 36 LGQGFPDFPPPKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLD------PDDEVLVTAGANEAISSA 109 (420)
T ss_pred ccCCCCCCCCcHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccC------CcccEEEecCchHHHHHH
Confidence 4443333445666666666554432 333444556667778888888887764321 124688999999998888
Q ss_pred HHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecC--------CCCcccHHHHHHHHH
Q psy13453 605 ILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSD--------DNGVLRGDALLTAVK 676 (764)
Q Consensus 605 l~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d--------~~g~md~~~Le~~I~ 676 (764)
++.-.+. ...|++-+=.-.+-.-...+.|...+.||.. +++.+|++.|+.+|.
T Consensus 110 ~~~l~~~-------------------GDeVii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t 170 (420)
T KOG0257|consen 110 LLGLLNP-------------------GDEVIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKIT 170 (420)
T ss_pred HHHHcCC-------------------CCEEEEecCcchhhhhHHhhcCCcceeeccccccccccCccccCChHHHHhhcc
Confidence 7743221 1224444445555566677888876777654 688999999999998
Q ss_pred HhhhcCCCceEEEEeeccCCccccc---cHHHHHHHHHhcCCEEEEeccccccc
Q psy13453 677 EDLAKGLIPCCLIATLGTTGTCAFD---NLEELGPICQEYNIWLHVDAAYAGSA 727 (764)
Q Consensus 677 ~~~~~G~~p~~VvataGTT~~GaiD---pl~eIa~i~~~~glwLHVDaA~Gg~~ 727 (764)
+.++ +|+.+..++.+|.+- .|++|++||++||+|+..|-+|-...
T Consensus 171 ~kTk------~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v 218 (420)
T KOG0257|consen 171 EKTK------AIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLV 218 (420)
T ss_pred CCcc------EEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHh
Confidence 8755 999999999999984 68889999999999999999987643
|
|
| >KOG2862|consensus | Back alignment and domain information |
|---|
Probab=98.14 E-value=7.1e-05 Score=79.46 Aligned_cols=193 Identities=15% Similarity=0.110 Sum_probs=129.0
Q ss_pred ccCCCCChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHH
Q psy13453 528 YFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILV 607 (764)
Q Consensus 528 ~~~~~~~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~a 607 (764)
+.|++.+.+.-+ ..+.|.|... ..+|.+-.+-.++++-+...|.-... .--+|.+.|+-+. -+
T Consensus 21 ~gPGPsnl~~~V----~~A~~~~~lg-h~sPe~~qIm~~v~egikyVFkT~n~--------~tf~isgsGh~g~----E~ 83 (385)
T KOG2862|consen 21 LGPGPSNLSGRV----QEAMSRPSLG-HMSPEFVQIMDEVLEGIKYVFKTANA--------QTFVISGSGHSGW----EA 83 (385)
T ss_pred ecCCCcCCCHHH----HHhhcCCccc-cCCHHHHHHHHHHHHHHHHHhccCCC--------ceEEEecCCcchH----HH
Confidence 344444444333 3344444332 46899999999999999999865442 1224445555433 33
Q ss_pred HHHHHhhhhccCCCCCccccccCceEEEecCCcchhHH--HHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCc
Q psy13453 608 AKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVE--KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIP 685 (764)
Q Consensus 608 AR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~--kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p 685 (764)
|.-..+. |...+++-...-.+-. ..++.+|++|..|+.|-......+.+++++... +|
T Consensus 84 al~N~le---------------Pgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh-----~p 143 (385)
T KOG2862|consen 84 ALVNLLE---------------PGDNVLVVSTGTWGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQH-----KP 143 (385)
T ss_pred HHHhhcC---------------CCCeEEEEEechHHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhc-----CC
Confidence 3222221 2223444444444432 336678999999998877789999999999774 58
Q ss_pred eEEEEeeccCCcccccc-HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 686 CCLIATLGTTGTCAFDN-LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 686 ~~VvataGTT~~GaiDp-l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
-+|+.|.|.|.||..+| ++.+.++|++|+..|.||+.-..+. .+++..--|+ |..-.--.|.+++|.|.|++
T Consensus 144 ~~vfv~hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~VaSlgg---t~F~mDewgV---DvaytgSQKaL~aP~GLsii 216 (385)
T KOG2862|consen 144 KAVFVTHGDSSTGVLQDLLAISGELCHKHEALLLVDTVASLGG---TEFEMDEWGV---DVAYTGSQKALGAPAGLSII 216 (385)
T ss_pred ceEEEEecCccccccchHHHHHHHHhhcCCeEEEEechhhcCC---ccceehhhcc---cEEEecchhhcCCCCCccee
Confidence 89999999999999999 6777899999999999998633222 2223222344 87778889999999988764
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=6.9e-05 Score=84.54 Aligned_cols=148 Identities=14% Similarity=0.084 Sum_probs=101.1
Q ss_pred ccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEE--EeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCc
Q psy13453 554 WLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGI--IQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631 (764)
Q Consensus 554 ~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~Gv--fTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~ 631 (764)
|.......++=+.+.+|+.+.-+.+-+ ....+ .|.||++|...++.+.+.- .. +.
T Consensus 68 Y~~~~G~~~lR~aia~~~~~~~~~~~~-------~~~v~~~~t~G~~~al~~~~~~l~~~-~~---------------~G 124 (404)
T PTZ00376 68 YLPIEGLQSFIEAAQKLLFGEASYALA-------EKRIATVQALSGTGALRLGFEFLKRF-LP---------------AG 124 (404)
T ss_pred CCCCCCCHHHHHHHHHHhcCCCccccc-------cCeEEEeeccCcchHHHHHHHHHHHh-cC---------------CC
Confidence 433334445555566666443221110 12344 3889999976665543322 11 12
Q ss_pred eEEEecCCcchhHHHHHHhCCCceEEEecC--CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccHHHH
Q psy13453 632 LVAYTSDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLEEL 706 (764)
Q Consensus 632 ~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d--~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~eI 706 (764)
..|++.+-+.......++..|.+++.||.+ +++.+|++.+++++++... ...+++....++.||.+ +.+++|
T Consensus 125 d~Vlv~~P~y~~~~~~~~~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~~~---~~~~~~~~~p~NPTG~~~s~~~~~~l 201 (404)
T PTZ00376 125 TTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAPN---GSVVLLHACAHNPTGVDPTEEQWKEI 201 (404)
T ss_pred CEEEEcCCCchhHHHHHHHcCCceeeccccCcccCCcCHHHHHHHHHhCCC---CCEEEEeCCCCCCCCCCCCHHHHHHH
Confidence 256777777888888999999999999983 3588999999999865321 23567677888999988 577788
Q ss_pred HHHHHhcCCEEEEeccccccc
Q psy13453 707 GPICQEYNIWLHVDAAYAGSA 727 (764)
Q Consensus 707 a~i~~~~glwLHVDaA~Gg~~ 727 (764)
+++|++|++|+++|-+|....
T Consensus 202 ~~~a~~~~~~ii~De~Y~~~~ 222 (404)
T PTZ00376 202 ADVMKRKNLIPFFDMAYQGFA 222 (404)
T ss_pred HHHHHhCCcEEEEehhhcCcc
Confidence 889999999999999998644
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00011 Score=84.61 Aligned_cols=196 Identities=14% Similarity=0.095 Sum_probs=130.3
Q ss_pred HHHHHHHHHHhhc---cc-CccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHH
Q psy13453 536 PSIVGDMLSGAFG---LI-GFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRK 611 (764)
Q Consensus 536 ~~~lad~l~~~lN---~n-~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~ 611 (764)
...+.+.+...+. .. ...|........+=+.+.+++....|...+ ....++|+|+++|..+.+.+-
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~-------~~~IiiT~G~q~al~l~~~~l--- 175 (459)
T COG1167 106 LEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCE-------PEQIVITSGAQQALDLLLRLL--- 175 (459)
T ss_pred HHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccC-------cCeEEEeCCHHHHHHHHHHHh---
Confidence 3445555554442 22 344555567777777888888877777653 236899999998865443321
Q ss_pred HhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEe
Q psy13453 612 MINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIAT 691 (764)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~Vvat 691 (764)
. .|...|.+-+-+++....+....|++++.||+|++| ||+++|++.++.. +.-++.+..
T Consensus 176 -~---------------~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d~~G-~~~e~le~~~~~~----~~k~~y~~P 234 (459)
T COG1167 176 -L---------------DPGDTVLVEDPTYPGALQALEALGARVIPVPVDEDG-IDPEALEEALAQW----KPKAVYVTP 234 (459)
T ss_pred -C---------------CCCCEEEEcCCCcHHHHHHHHHcCCcEEecCCCCCC-CCHHHHHHHHhhc----CCcEEEECC
Confidence 1 134478899999999999999999999999999766 9999999998764 122444555
Q ss_pred eccCCccccccH---HHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcc--cEEEEcCCccCCCCcCceee
Q psy13453 692 LGTTGTCAFDNL---EELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYV--DSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 692 aGTT~~GaiDpl---~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~a--DSit~d~HK~l~~P~~~g~l 763 (764)
...+.+|.+=++ .+|.++|++|++|++=|-.|+-...-.+.-. -+.++..- =-..-++.|.+.--.-+|.+
T Consensus 235 ~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~-~l~~ld~~~rViy~gSFSK~l~PglRlG~v 310 (459)
T COG1167 235 TFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPP-PLKALDAPGRVIYLGSFSKTLAPGLRLGYV 310 (459)
T ss_pred CCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCC-ChHhhCCCCCEEEEeeehhhcccccceeee
Confidence 566778877544 5699999999999999999987543321111 11122110 12345677777655555544
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.2e-05 Score=90.28 Aligned_cols=164 Identities=15% Similarity=0.090 Sum_probs=120.5
Q ss_pred HHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhH
Q psy13453 565 VLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV 644 (764)
Q Consensus 565 ~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv 644 (764)
.++.+..++.||.+.+| ..+.|.|.||...+.+.. .++..|++...+|.|+
T Consensus 73 ~eAqe~aA~~fgAd~ty----------FvvNGTS~ank~vi~a~~-------------------~~GD~VLvdRN~HKSi 123 (557)
T COG1982 73 KEAQELAARVFGADHTY----------FVVNGTSTANKAVINAVL-------------------TPGDKVLVDRNCHKSI 123 (557)
T ss_pred HHHHHHHHHHhCCCceE----------EEECCccHHHHHHHHhhc-------------------CCCCEEEecCCccHHH
Confidence 44556789999998764 356777777876665432 1234688999999999
Q ss_pred HHHHHhCCCceEEEecC--C----CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEE
Q psy13453 645 EKSAIIGDVPVRQLRSD--D----NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLH 718 (764)
Q Consensus 645 ~kAa~~lGl~v~~Vp~d--~----~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLH 718 (764)
..+..+.|..-+.+... + -|.|+.+.+++++.+....- -++++|.+ |..|.+=++++|.+.+..+++|+-
T Consensus 124 ~~glilaGa~Pvyl~p~~np~~gi~ggI~~~~~~~~l~~~~~~~---k~~vitnp-TYdGv~~n~~~i~~~~~~~~a~v~ 199 (557)
T COG1982 124 HHGLILAGATPVYLEPSRNPLYGIIGGIPLETFKEALLAHPDAE---KLAVITNP-TYDGVCYNLRKIVELLHHYGAWVL 199 (557)
T ss_pred HHHHHHcCCceEEecCCCCccccccCCCCHHHHHHHHHhChhhh---eeEEEecC-ccceEeecHHHHHHHHhhcCceEE
Confidence 99988889865555442 2 36799999999997654321 25666665 557999999999999999999999
Q ss_pred EeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCcee
Q psy13453 719 VDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSA 762 (764)
Q Consensus 719 VDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~ 762 (764)
+|-|++...-+++..-..-. -..+|-+|-|.||.+++=-++|.
T Consensus 200 ~deah~~~~~~~~~l~~~~~-~~~~~~~tqS~HK~l~alSQaS~ 242 (557)
T COG1982 200 YDEAHPAHFDFSPMLPESAL-NGGADFVTQSTHKLLAALSQASM 242 (557)
T ss_pred hhhcCcccccccccCcchhh-hcCceEEEechhhhhhhhhhhHH
Confidence 99999998777654333110 02469999999999987655554
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.1e-05 Score=85.39 Aligned_cols=148 Identities=17% Similarity=0.136 Sum_probs=91.8
Q ss_pred EEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceE------EEecCCCC
Q psy13453 591 GIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVR------QLRSDDNG 664 (764)
Q Consensus 591 GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~------~Vp~d~~g 664 (764)
.+|+++||+||..|+..||... + ++.+|......|-+...++...|.... .++.....
T Consensus 87 ~~~~~SGseA~~~Al~~ar~~~-~---------------~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (375)
T PRK04260 87 AFFCNSGAEANEAAIKIARKAT-G---------------KQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYA 150 (375)
T ss_pred EEEcCccHHHHHHHHHHHHHhc-C---------------CCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEe
Confidence 5799999999999999998641 1 123566677889877777665443211 01100001
Q ss_pred -cccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc----cHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcC
Q psy13453 665 -VLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD----NLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRG 739 (764)
Q Consensus 665 -~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD----pl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~g 739 (764)
.-|+++|++.+.+. ..+|+.......+|.+- .+++|.++|+++|+++++|.+|.+...-..-+.....|
T Consensus 151 ~~~dl~~l~~~l~~~------~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~ 224 (375)
T PRK04260 151 IFNDLNSVKALVNKN------TAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYG 224 (375)
T ss_pred CCCCHHHHHHhcCCC------eEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhC
Confidence 24789998877432 34666655556667764 49999999999999999999997632211111111234
Q ss_pred CCcccEEEEcCCccCCCCcCceee
Q psy13453 740 LEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 740 ie~aDSit~d~HK~l~~P~~~g~l 763 (764)
+ ..|-+ ++.|.++.-+..|.+
T Consensus 225 ~-~pdi~--t~sK~l~~G~~ig~~ 245 (375)
T PRK04260 225 I-EPDIF--TLAKGLANGVPVGAM 245 (375)
T ss_pred C-CCCEE--EecccccCCcceEEE
Confidence 4 34633 679987632334443
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.1e-05 Score=84.47 Aligned_cols=162 Identities=11% Similarity=0.005 Sum_probs=105.9
Q ss_pred eeeeHHHHH---hhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----C
Q psy13453 20 LIYESFKAT---HSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----N 91 (764)
Q Consensus 20 ~~YSv~KAa---~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~ 91 (764)
.|.|+..+. ...|+.. +.||+++++.+|+++|+++++++ +-+++-+.+++++|.+.|+++|++ +
T Consensus 97 ~~~s~~~~~~~~~~~G~~v---~~v~~~~~~~~d~~~l~~~l~~~-----~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~ 168 (353)
T TIGR03235 97 EHPAVLEPIRALERNGFTV---TYLPVDESGRIDVDELADAIRPD-----TLLVSIMHVNNETGSIQPIREIAEVLEAHE 168 (353)
T ss_pred ccHHHHHHHHHHHhcCCEE---EEEccCCCCcCCHHHHHHhCCCC-----CEEEEEEcccCCceeccCHHHHHHHHHHcC
Confidence 466665443 3456655 99999988999999999998642 224457889999999999999886 8
Q ss_pred CCceecccc--------------------cccc-----ceeeeecCCCccccccccccccC-----CcccCCCCc-ccHH
Q psy13453 92 GPLKVGGVL--------------------RRVY-----SSCLVPRGQKSLRTTVLFHFLFQ-----HWQIPLGRR-FRAL 140 (764)
Q Consensus 92 ~wlHVDa~l--------------------~~~y-----~s~ll~rd~~~l~~~~s~~~d~~-----d~tle~SRr-~~AL 140 (764)
+|+|||++. .+++ +++++++++...... ..+.+. ..--.++.. ...+
T Consensus 169 ~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~g~g~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~gt~~~~~~~ 246 (353)
T TIGR03235 169 AFFHVDAAQVVGKITVDLSADRIDLISCSGHKIYGPKGIGALVIRKRGKPKAP--LKPIMFGGGQERGLRPGTLPVHLIV 246 (353)
T ss_pred CEEEEEchhhcCCccccccccCCCEEEeehhhcCCCCceEEEEEccCcccccc--cCceeeCCCCcCccccCCCChHHHH
Confidence 999999942 1121 135555543211100 010000 000122332 2234
Q ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC---ceeEEEEe
Q psy13453 141 KLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS---MGLVCFRL 193 (764)
Q Consensus 141 klWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~---l~iV~Fry 193 (764)
.+..+++.+ .+|..++.++..++++++.+.|++ ++++++.+++ ..+++|..
T Consensus 247 al~~al~~~-~~~~~~~~~~~~~l~~~l~~~l~~-~g~~~~~~~~~~~~~i~~~~~ 300 (353)
T TIGR03235 247 GMGEAAEIA-RRNAQAWEVKLRAMRNQLRDALQT-LGVKLNGDPAETIPHILNFSI 300 (353)
T ss_pred HHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhcc-CCeEEeCCcccccCCEEEEEe
Confidence 556666654 468888899999999999999988 8999987654 44788864
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00013 Score=82.33 Aligned_cols=216 Identities=13% Similarity=-0.021 Sum_probs=123.4
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCccccccCCCC--ChHHHHHHHHHHhhcc-----cCccccCCchHHHHHHHHHHHHH
Q psy13453 500 EDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTGS--SYPSIVGDMLSGAFGL-----IGFSWLSSPACTELEVLVMNWLG 572 (764)
Q Consensus 500 ~~~~~il~~l~~~i~~~~~~~~~P~~~~~~~~~~--~~~~~lad~l~~~lN~-----n~~~~~~sp~~t~lE~~v~~~la 572 (764)
..++++.+.+.+.-. .|..+..+.+-.+.+ .++..+.+.+...++. ....|...+....+-+.+.+|+.
T Consensus 15 ~~~~~~~~~~~~~~~----~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~ 90 (409)
T PRK07590 15 YLFPEIARRVNAFRE----ANPEAKIIRLGIGDVTQPLPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDY 90 (409)
T ss_pred chHHHHHHHHHHHhh----hcCCCceEEecCcCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHH
Confidence 346666666665432 233333333322222 1233344555544432 23445555666778888888887
Q ss_pred HHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCC
Q psy13453 573 KALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGD 652 (764)
Q Consensus 573 ~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lG 652 (764)
+..|++-+ ....++|+|++++... +.. .+. +...|++.+=+.......+...|
T Consensus 91 ~~~g~~~~-------~~~I~it~Ga~~al~~-l~~----~~~---------------~gd~V~v~~P~Y~~~~~~~~~~g 143 (409)
T PRK07590 91 QARGCDIS-------ADEIFISDGAKCDTGN-ILD----IFG---------------PDNTIAVTDPVYPVYVDTNVMAG 143 (409)
T ss_pred HhcCCcCC-------hhhEEECCCHHHHHHH-HHH----hcC---------------CCCEEEEeCCCCcchHHHHHHcC
Confidence 77665432 2357889998887544 221 111 11235666666677778888888
Q ss_pred Cc-----------eEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc---cHHHHHHHHHhcCCEEE
Q psy13453 653 VP-----------VRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD---NLEELGPICQEYNIWLH 718 (764)
Q Consensus 653 l~-----------v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD---pl~eIa~i~~~~glwLH 718 (764)
.. ++.||++.++.+.++. ++ ..+-+|+.+..++.||.+= .+++|+++|++||+|+.
T Consensus 144 ~~~~~~~~~~~~~~~~v~~~~~~~~~~d~-~~---------~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI 213 (409)
T PRK07590 144 RTGEANEDGRYSGIVYLPCTAENNFVPEL-PE---------EKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLIL 213 (409)
T ss_pred CcccccccccccceeEeecccccCCcccC-cc---------cCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEE
Confidence 86 8899987543333321 11 1233555567889999884 56678888999999999
Q ss_pred EeccccccccccchhhhhhcCCCcc-c-EE-EEcCCccCCCC
Q psy13453 719 VDAAYAGSALLLPEYAHLKRGLEYV-D-SF-DFNTHKWLLVN 757 (764)
Q Consensus 719 VDaA~Gg~~l~~~~~r~~l~gie~a-D-Si-t~d~HK~l~~P 757 (764)
+|-+|+-...- ......+..+... + .| .-++.|.++.|
T Consensus 214 ~De~Y~~~~~~-~~~~~~~~~~~~~~~~vi~~~SfSK~~~~p 254 (409)
T PRK07590 214 FDAAYEAFISD-PSLPHSIYEIEGARECAIEFRSFSKTAGFT 254 (409)
T ss_pred EEccchhhccC-CCCCcchhhCCCcccceEEEecCccccCCc
Confidence 99999864321 1100111122111 1 34 44899988644
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.4e-05 Score=83.14 Aligned_cols=159 Identities=12% Similarity=-0.008 Sum_probs=102.6
Q ss_pred HHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhH
Q psy13453 565 VLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV 644 (764)
Q Consensus 565 ~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv 644 (764)
..+.+.+++.+|.+++ ..++|+|++++..+++.+. ... ++..|++++-.+...
T Consensus 62 ~~lr~~ia~~~~~~~~---------~I~~t~G~~~~l~~~~~~~----~~~--------------g~~~vlv~~p~y~~~ 114 (364)
T PRK04781 62 PGLRSALAALYGCAPE---------QLLIGRGSDEAIDLLVRAL----CVP--------------GRDAVLVTPPVFGMY 114 (364)
T ss_pred HHHHHHHHHHhCcChH---------HEEEeCCHHHHHHHHHHHh----cCC--------------CCCeEEEcCCChHHH
Confidence 4556667777787653 6789999999876655422 110 112456666565556
Q ss_pred HHHHHhCCCceEEEecC--CC-CcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHh--cCCEEEE
Q psy13453 645 EKSAIIGDVPVRQLRSD--DN-GVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQE--YNIWLHV 719 (764)
Q Consensus 645 ~kAa~~lGl~v~~Vp~d--~~-g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~--~glwLHV 719 (764)
...++..|.+++.||.+ ++ +.+|++++.+.+... .+-+|+.+..++.||.+-+.+++.++++. +++|+++
T Consensus 115 ~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~-----~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~ 189 (364)
T PRK04781 115 AVCARLQNAPLVEVPLVDGADGFHADVPAIVAAALAS-----NAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVV 189 (364)
T ss_pred HHHHHHcCCEEEEEecCCCccCCCcCHHHHHHHHhcc-----CCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEE
Confidence 66678899999999984 23 468999886654321 13366667899999999998888888764 4899999
Q ss_pred eccccccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 720 DAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 720 DaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
|.||+-+.. .+.....++...+ =-+.-++-|.++.|
T Consensus 190 Deay~~f~~-~~~~~~~~~~~~~-vi~~~SfSK~~gl~ 225 (364)
T PRK04781 190 DEAYGEFSD-VPSAVGLLARYDN-LAVLRTLSKAHALA 225 (364)
T ss_pred eCcchhhcC-CcchHHHHhhCCC-EEEEecChhhcccc
Confidence 999986432 1111111111111 14567888987744
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00019 Score=83.47 Aligned_cols=192 Identities=10% Similarity=0.051 Sum_probs=113.0
Q ss_pred HHHHHHHHHHhhcccCccccCCchHHHHHHHHHH-HHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhh
Q psy13453 536 PSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMN-WLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMIN 614 (764)
Q Consensus 536 ~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~-~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~ 614 (764)
+..+-++...... ..|...+....+-+.+++ ++.+..+..... .+....++|.|++++..+++.+.....+-
T Consensus 115 ~~~v~e~~~~~~~---~~Y~~~~g~~~lreaia~~~~~~~~~~~~~~----~~~~~I~vT~Ga~~al~~~~~aL~~~~ll 187 (527)
T PRK09275 115 DEFVYELVDGIIG---DNYPVPDRMLKHTEKIVKDYLRQEMCGGRPP----KGEFDLFAVEGGTAAMCYIFDSLKENGLL 187 (527)
T ss_pred CHHHHHHHHHHhc---CCCCCCCCCHHHHHHHHHHHHHhhccCCCCC----CCcCeEEEeCCHHHHHHHHHHHHhhhhcC
Confidence 4445554444433 246666666555555555 555443321100 01125789999999988777643221111
Q ss_pred hhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCce--EEEecC--CCCcccHHHHHHHHHHhhhcCCCceEEEE
Q psy13453 615 HWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPV--RQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLIA 690 (764)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v--~~Vp~d--~~g~md~~~Le~~I~~~~~~G~~p~~Vva 690 (764)
.+...|++..-........+.+.|.++ +.++++ +++.+|+++|++++.+. +-+|++
T Consensus 188 --------------~pGD~Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~~------tkai~l 247 (527)
T PRK09275 188 --------------KAGDKIALMTPIFTPYLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRDPS------IKALFL 247 (527)
T ss_pred --------------CCCCEEEEeCCChHHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCCC------CCEEEE
Confidence 112245556666666666777776554 455544 34789999999877543 337777
Q ss_pred eeccCCcccccc---HHHHHHHHHh--cCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 691 TLGTTGTCAFDN---LEELGPICQE--YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 691 taGTT~~GaiDp---l~eIa~i~~~--~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
+..++.||.+=+ +++|+++|++ +++|+.+|-+|+-.. ..+...+.-...---+.-++.|.++.|
T Consensus 248 ~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~---~~~~s~~~~~~~~~I~v~SfSK~f~mt 316 (527)
T PRK09275 248 VNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFV---DDFRSLFAVLPYNTILVYSFSKYFGAT 316 (527)
T ss_pred eCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhc---ccccCHHHhCCCCEEEEeehhhhccCc
Confidence 789999999955 7778888965 599999999998643 122111111111123345778877644
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=7.2e-05 Score=83.37 Aligned_cols=156 Identities=11% Similarity=-0.061 Sum_probs=103.0
Q ss_pred HHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHH
Q psy13453 566 LVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVE 645 (764)
Q Consensus 566 ~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~ 645 (764)
.+.+.+++.+|.+++ ..++|+|++++...++.+.. . ++..|++.+-++....
T Consensus 71 ~Lr~~ia~~~~~~~~---------~I~it~G~~~~l~~~~~~~~----~---------------~gd~vlv~~p~y~~~~ 122 (369)
T PRK08153 71 DLRHALAAHHGVAPE---------NIMVGEGIDGLLGLIVRLYV----E---------------PGDPVVTSLGAYPTFN 122 (369)
T ss_pred HHHHHHHHHhCCCHH---------HEEEcCCHHHHHHHHHHHhc----C---------------CCCEEEECCCcchHHH
Confidence 344555566677653 57889998887655444221 1 1225777788888888
Q ss_pred HHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhc--CCEEEEeccc
Q psy13453 646 KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEY--NIWLHVDAAY 723 (764)
Q Consensus 646 kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~--glwLHVDaA~ 723 (764)
..+...|.+++.||.+.++ +|+++|++.+... .+-+|+.+..++.+|.+-+.+++.++++.+ ++|+.+|-+|
T Consensus 123 ~~~~~~g~~~~~vp~~~~~-~~~~~l~~~~~~~-----~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y 196 (369)
T PRK08153 123 YHVAGFGGRLVTVPYRDDR-EDLDALLDAARRE-----NAPLVYLANPDNPMGSWHPAADIVAFIEALPETTLLVLDEAY 196 (369)
T ss_pred HHHHHcCCeEEEeeCCCCC-CCHHHHHHHhccc-----CCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCch
Confidence 8888899999999987664 8999888776432 123566678899999998888888777654 8999999999
Q ss_pred cccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 724 AGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 724 Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
+.... -.... .+.....---+..++-|.++.|
T Consensus 197 ~~~~~-~~~~~-~~~~~~~~~i~~~SfSK~~g~~ 228 (369)
T PRK08153 197 CETAP-AGAAP-PIDTDDPNVIRMRTFSKAYGLA 228 (369)
T ss_pred hhhcC-cccch-hhhhcCCCEEEEecchHhccCc
Confidence 75321 11111 1111111124466889988755
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00016 Score=80.19 Aligned_cols=164 Identities=13% Similarity=0.067 Sum_probs=105.8
Q ss_pred cccCCchHHHHHHHHHHHHHHHcCCC-ccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCc
Q psy13453 553 SWLSSPACTELEVLVMNWLGKALGLP-EEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631 (764)
Q Consensus 553 ~~~~sp~~t~lE~~v~~~la~llG~p-~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~ 631 (764)
.|.......++.+.+.+|+.+..|.+ -+ ....++|+|++++...++.+.. .. ++
T Consensus 57 ~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~-------~~~I~it~G~~~~i~~~~~~l~---~~---------------~g 111 (364)
T PRK07865 57 GYPTTAGTPELREAIVGWLARRRGVTGLD-------PAAVLPVIGSKELVAWLPTLLG---LG---------------PG 111 (364)
T ss_pred CCCCccCCHHHHHHHHHHHHHHcCCCCCC-------cccEEEccChHHHHHHHHHHHc---CC---------------CC
Confidence 45545556678888999999888764 21 2367899999998755433210 01 12
Q ss_pred eEEEecCCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccHHHHHH
Q psy13453 632 LVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLEELGP 708 (764)
Q Consensus 632 ~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~eIa~ 708 (764)
..|++.+-+|.....++..+|++++.++. +++++. ..+-+|+.+..++.||.+ +.+++|.+
T Consensus 112 d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~-------~~~l~~---------~~~~~v~~~~p~NPtG~~~~~~~~~~i~~ 175 (364)
T PRK07865 112 DVVVIPELAYPTYEVGARLAGATVVRADS-------LTELGP---------QRPALIWLNSPSNPTGRVLGVDHLRKVVA 175 (364)
T ss_pred CEEEECCCCcccHHHHHHhcCCEEEecCC-------hhhCCc---------ccceEEEEcCCCCCCCccCCHHHHHHHHH
Confidence 24777888899999999999998777642 223221 124466667788999977 56788899
Q ss_pred HHHhcCCEEEEeccccccccccchhh---hhhcCCC-cccEEEEcCCccCCCC
Q psy13453 709 ICQEYNIWLHVDAAYAGSALLLPEYA---HLKRGLE-YVDSFDFNTHKWLLVN 757 (764)
Q Consensus 709 i~~~~glwLHVDaA~Gg~~l~~~~~r---~~l~gie-~aDSit~d~HK~l~~P 757 (764)
+|++||+|+.+|.+|+....-.+... ..+.+.. .-.-+..++.|.++.|
T Consensus 176 ~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 228 (364)
T PRK07865 176 WARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLA 228 (364)
T ss_pred HHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccCCC
Confidence 99999999999999986432111000 0000110 1125677899988654
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=8.8e-05 Score=82.82 Aligned_cols=155 Identities=12% Similarity=0.002 Sum_probs=100.4
Q ss_pred HHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhc
Q psy13453 538 IVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQ 617 (764)
Q Consensus 538 ~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~ 617 (764)
.+.+.+....+. ...|........+-+.+.+|+.+..|.+-+ ....++|+|++++....+.+.. ...
T Consensus 41 ~~~~a~~~~~~~-~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~-------~~~I~it~G~~~al~~~~~~~~---~~~-- 107 (374)
T PRK05839 41 FIQDALKNNAHL-LNKYPKSAGEESLREAQRGFFKRRFKIELK-------ENELIPTFGTREVLFNFPQFVL---FDK-- 107 (374)
T ss_pred HHHHHHHHHhhc-cCCCCCCCCCHHHHHHHHHHHHHHhCCCCC-------cceEEEecCcHHHHHHHHHHHh---cCC--
Confidence 344444433322 233433334456777788899888775321 1367899999987655443221 100
Q ss_pred cCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCCC--CcccHHHHHHHHHHhhhcCCCceEEEEeeccC
Q psy13453 618 SKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDN--GVLRGDALLTAVKEDLAKGLIPCCLIATLGTT 695 (764)
Q Consensus 618 ~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~--g~md~~~Le~~I~~~~~~G~~p~~VvataGTT 695 (764)
+...|++..-+......++...|++++.||.+++ +.+|+.+. .+. .+-+|+.+..++
T Consensus 108 ------------~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~~--~~~-------~~k~v~i~nP~N 166 (374)
T PRK05839 108 ------------QNPTIAYPNPFYQIYEGAAIASRAKVLLMPLTKENDFTPSLNEK--ELQ-------EVDLVILNSPNN 166 (374)
T ss_pred ------------CCCEEEECCCCchhhHHHHHhcCCEEEEeecccccCCcCCcchh--hhc-------cccEEEEeCCCC
Confidence 1224666667777788888999999999999754 45554432 221 133666678889
Q ss_pred Ccccc---ccHHHHHHHHHhcCCEEEEecccccc
Q psy13453 696 GTCAF---DNLEELGPICQEYNIWLHVDAAYAGS 726 (764)
Q Consensus 696 ~~Gai---Dpl~eIa~i~~~~glwLHVDaA~Gg~ 726 (764)
.||.+ +.+++|+++|++||+|+.+|-+|+-.
T Consensus 167 PTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~ 200 (374)
T PRK05839 167 PTGRTLSLEELIEWVKLALKHDFILINDECYSEI 200 (374)
T ss_pred CcCcccCHHHHHHHHHHHHHcCCEEEeccchhhc
Confidence 99988 46677778899999999999999864
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00021 Score=78.16 Aligned_cols=217 Identities=9% Similarity=-0.043 Sum_probs=131.1
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccCchhhhc-----CCC
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQSLNAPVS-----NGP 93 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDpi~~ia~-----~~w 93 (764)
.|+++..+++..|... +.+| .+|++.+++.|++... ..++.+ +.+.+.+++|.+.|++++++ +++
T Consensus 94 ~~~~~~~~~~~~g~~~---~~~~-----~~~~~~le~~i~~~~~-~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~ 164 (349)
T cd06454 94 NHASIIDGIRLSGAKK---RIFK-----HNDMEDLEKLLREARR-PYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAI 164 (349)
T ss_pred hhHHHHHHHHHcCCce---EEec-----CCCHHHHHHHHHHhhc-cCCCeEEEEeccccCCCCccCHHHHHHHHHHcCCE
Confidence 5788888888888776 5555 3588899999986431 123444 56778889999999999886 889
Q ss_pred ceecccccc----ccce---eeeec-CCCcc-----cccccc--cc-----c--------cCCcccCCCC-cccHHHHHH
Q psy13453 94 LKVGGVLRR----VYSS---CLVPR-GQKSL-----RTTVLF--HF-----L--------FQHWQIPLGR-RFRALKLWM 144 (764)
Q Consensus 94 lHVDa~l~~----~y~s---~ll~r-d~~~l-----~~~~s~--~~-----d--------~~d~tle~SR-r~~ALklWa 144 (764)
+++|+.... .... .+... +...+ +..+.. .+ . ...+...++- ....+.+.+
T Consensus 165 livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 244 (349)
T cd06454 165 LFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGAVGGYIAGSKELIDYLRSYARGFIFSTSLPPAVAAAALA 244 (349)
T ss_pred EEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcccCCEEECCHHHHHHHHHhchhhhccCCCCHHHHHHHHH
Confidence 999996421 1110 00000 00000 000000 00 0 0011122222 222334455
Q ss_pred HHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHH
Q psy13453 145 TLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRII 224 (764)
Q Consensus 145 tL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~ 224 (764)
+++.+-. +.++.++..++++++.+.+++. +++++.++...+.++...+ +.-..++.+.|.
T Consensus 245 ~l~~~~~--~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~L~ 304 (349)
T cd06454 245 ALEVLQG--GPERRERLQENVRYLRRGLKEL-GFPVGGSPSHIIPPLIGDD-----------------PAKAVAFSDALL 304 (349)
T ss_pred HHHHHhc--CHHHHHHHHHHHHHHHHHHHhc-CCcccCCCCCcEEEEeCCC-----------------hHHHHHHHHHHH
Confidence 5655532 5667788889999999999886 7887776665555554210 112367888888
Q ss_pred hcCcEEEEece---eCCeeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 225 ARKVIYIVKGS---FQDRLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 225 ~~G~~~vs~t~---l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
++|........ ..+...+|+++ +...++++++++++.|+++
T Consensus 305 ~~gI~~~~~~~~~~~~~~~~iRi~~-~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 305 ERGIYVQAIRYPTVPRGTARLRISL-SAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred hCCceEEEecCCccCCCCCeEEEEE-eCCCCHHHHHHHHHHHHHh
Confidence 88875433211 12246899976 4556799999999999875
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00021 Score=80.17 Aligned_cols=117 Identities=14% Similarity=0.058 Sum_probs=81.9
Q ss_pred cEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHH-HhCCCceEEEecC-CCCccc
Q psy13453 590 GGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSA-IIGDVPVRQLRSD-DNGVLR 667 (764)
Q Consensus 590 ~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa-~~lGl~v~~Vp~d-~~g~md 667 (764)
..++|+|++++..+.+.+.. . +...|++..-++.....++ ...|.+++.+|.+ +++.+|
T Consensus 71 ~I~it~G~~~al~~~~~~l~----~---------------~gd~Vlv~~P~y~~~~~~~~~~~g~~vv~v~~~~~~~~~d 131 (388)
T PRK08637 71 LPIVTNALTHGLSLVADLFV----D---------------QGDTVLLPDHNWGNYKLTFNTRRGAEIVTYPIFDEDGGFD 131 (388)
T ss_pred eeeEccchHHHHHHHHHHhc----C---------------CCCEEEEcCCCCccHHHHHHHhcCCEEEEecccCCCCcCC
Confidence 46789999998766554321 0 1124566666666666654 4579999999984 566799
Q ss_pred HHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccHHHHHHHHHh-----cCCEEEEeccccccc
Q psy13453 668 GDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLEELGPICQE-----YNIWLHVDAAYAGSA 727 (764)
Q Consensus 668 ~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~eIa~i~~~-----~glwLHVDaA~Gg~~ 727 (764)
+++|+++++....+ ...+++.+..++.||.+ +.+++|+++|++ |++|+.+|-+|....
T Consensus 132 ~~~l~~~~~~~~~~--~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~ 197 (388)
T PRK08637 132 TDALKEALQAAYNK--GKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLF 197 (388)
T ss_pred HHHHHHHHHhhccC--CCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcc
Confidence 99999998732111 23456666678999977 567777777775 899999999998754
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0002 Score=80.98 Aligned_cols=164 Identities=16% Similarity=0.118 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchh
Q psy13453 564 EVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSS 643 (764)
Q Consensus 564 E~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~S 643 (764)
..++.+.|+++++.+ ..+|+.+|||||..|+++||.....+ +.. .+..++.....-|-+
T Consensus 83 ~~~la~~l~~~~~~~-----------~v~~~~sGseA~e~Alk~ar~~~~~~-~~~---------~r~~ii~~~~~yHG~ 141 (406)
T PRK12381 83 VLRLAKKLIDATFAD-----------RVFFCNSGAEANEAALKLARKYAHDR-YGS---------HKSGIVAFKNAFHGR 141 (406)
T ss_pred HHHHHHHHHhhCCCC-----------eEEEcCCcHHHHHHHHHHHHHHHhhc-CCC---------CCCeEEEECCCcCCc
Confidence 344556666666543 36899999999999999998764221 000 112355566667766
Q ss_pred HHHHHHhCCCc------------eEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcc----ccccHHHHH
Q psy13453 644 VEKSAIIGDVP------------VRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTC----AFDNLEELG 707 (764)
Q Consensus 644 v~kAa~~lGl~------------v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~G----aiDpl~eIa 707 (764)
..-+..+.|.. +..+|- -|+++|++.|.+. +.+|+..-....-| ..+.+++|+
T Consensus 142 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~------~aaviiEPv~~~gg~~~~~~~~l~~l~ 210 (406)
T PRK12381 142 TLFTVSAGGQPKYSQDFAPLPPDIRHAAY-----NDLNSASALIDDQ------TCAVIVEPIQGEGGVIPADKAFLQGLR 210 (406)
T ss_pred chhHHhhcCCcccccCCCCCCCCeeEeCC-----CCHHHHHHhccCC------eeEEEEeCCcCCCCCcCCCHHHHHHHH
Confidence 55454444321 222222 2688999888532 33555543333334 247899999
Q ss_pred HHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCcee
Q psy13453 708 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSA 762 (764)
Q Consensus 708 ~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~ 762 (764)
++|++||++|.+|-+|.|.-....-+.....++ ..|.+ .+-|.++.-+..|.
T Consensus 211 ~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v-~pDi~--t~sK~l~gG~~ig~ 262 (406)
T PRK12381 211 ELCDRHNALLIFDEVQTGVGRTGELYAYMHYGV-TPDVL--TTAKALGGGFPIGA 262 (406)
T ss_pred HHHHHcCCEEEEcchhhCCCCCcchhhhHhhCC-CCCEE--EehhhhhCCCceEE
Confidence 999999999999999966422111111112344 35654 44687753333443
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00015 Score=89.87 Aligned_cols=135 Identities=14% Similarity=0.179 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcch
Q psy13453 563 LEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNS 642 (764)
Q Consensus 563 lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~ 642 (764)
+-..+.+|+++..|++.+. ....++|+|+++++..++.+.. . +...|++..-+..
T Consensus 735 lr~aLa~~la~~~Gv~~d~------~e~IIvt~Gs~elL~lll~aLl----~---------------pGD~VLVp~PtY~ 789 (1082)
T PLN02672 735 PRPSILQFIKSNYGFPTDS------CTEFVYGDTSLALFNKLVLCCV----Q---------------EGGTLCFPAGSNG 789 (1082)
T ss_pred HHHHHHHHHHHHhCcCCCC------CCEEEEeCCHHHHHHHHHHHHc----C---------------CCCEEEEeCCChH
Confidence 4578889999999986531 1245666666655544433221 1 1224667777788
Q ss_pred hHHHHHHhCCCceEEEecCC--CCcccHHHHHHHHHHhhhcCCCceEEEEeecc-CCcccc---ccHHHHHHHHHhcCCE
Q psy13453 643 SVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLIATLGT-TGTCAF---DNLEELGPICQEYNIW 716 (764)
Q Consensus 643 Sv~kAa~~lGl~v~~Vp~d~--~g~md~~~Le~~I~~~~~~G~~p~~VvataGT-T~~Gai---Dpl~eIa~i~~~~glw 716 (764)
....++...|.+++.||+++ ++.+|+++|++++++.. .+ .|+.+..+ +.||.+ +.+++|+++|++||+|
T Consensus 790 ~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~~----~~-~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~ 864 (1082)
T PLN02672 790 TYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETVK----KP-WVYISGPTINPTGLLYSNSEIEEILSVCAKYGAR 864 (1082)
T ss_pred HHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCC----CC-EEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCE
Confidence 88888999999999999973 57899999999985421 12 56666665 889988 6788888899999999
Q ss_pred EEEeccccccc
Q psy13453 717 LHVDAAYAGSA 727 (764)
Q Consensus 717 LHVDaA~Gg~~ 727 (764)
+.+|-+|+...
T Consensus 865 VIsDEaYsdL~ 875 (1082)
T PLN02672 865 VIIDTSFSGLE 875 (1082)
T ss_pred EEEeCCCCccc
Confidence 99999998543
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=97.96 E-value=6.3e-05 Score=84.13 Aligned_cols=166 Identities=15% Similarity=0.001 Sum_probs=116.2
Q ss_pred cCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCcccccc
Q psy13453 550 IGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIR 629 (764)
Q Consensus 550 n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~ 629 (764)
.......+|.+.++-.++.+.|.++++.|.++ ...++++|||.+.=.++. ...++ .
T Consensus 27 ~~~~~HRs~~F~~i~~e~~~~L~~l~~~~~~~-------~v~~l~GsGT~a~Eaa~~----nl~~~---~---------- 82 (374)
T TIGR01365 27 PLGRSHRSKLGKEKLAEAIKKTREMLGVPADY-------LIGIVPASDTGAVEMALW----SMLGC---R---------- 82 (374)
T ss_pred hcccCcCCHHHHHHHHHHHHHHHHHhCCCCCc-------EEEEECCchHHHHHHHHH----HcCCC---C----------
Confidence 33444679999999999999999999986542 234668899887544433 22211 0
Q ss_pred CceEEEecCCcchhHH---HHHHhCCC-ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHH
Q psy13453 630 NKLVAYTSDQSNSSVE---KSAIIGDV-PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEE 705 (764)
Q Consensus 630 ~~~vi~~S~~aH~Sv~---kAa~~lGl-~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~e 705 (764)
+..++++. .++-. +.|+..|+ ++..+..+..-.+|+++++. . + -|+.|...|.+|...|+++
T Consensus 83 g~~vLv~g---~FG~r~~~eia~~~g~~~v~~l~~~~g~~~~~~~ve~----~-~------~v~~vhnETSTGv~npv~~ 148 (374)
T TIGR01365 83 GVDVLAWE---SFGKGWVTDVTKQLKLPDVRVLEAEYGKLPDLKKVDF----K-N------DVVFTWNGTTSGVRVPNGD 148 (374)
T ss_pred CCeEEEEC---HHHHHHHHHHHHhcCCCCcEEEcCCCCCCCCHHHcCC----C-C------CEEEecCCCchheeccccc
Confidence 11234443 55433 77788999 48888876555789999872 1 1 2679999999999999976
Q ss_pred HHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 706 LGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 706 Ia~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
|...+ ++..+.||+.-+.+....+ +++ +|.+....+|.++.|.|.|++
T Consensus 149 i~~~~--~~~lliVDavSs~g~~~l~-----~d~---iDv~~tgsQK~L~~ppGls~v 196 (374)
T TIGR01365 149 FIPAD--REGLTICDATSAAFAQDLD-----YHK---LDVVTFSWQKVLGGEGAHGML 196 (374)
T ss_pred ccccc--CCCcEEEEccchhcCCCCC-----hhH---CcEEEEechhccCCCCceEEE
Confidence 66332 5889999997555444332 223 599999999999999999876
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0004 Score=76.96 Aligned_cols=132 Identities=13% Similarity=0.107 Sum_probs=91.9
Q ss_pred cccCCchHHHHHHHHHHHHHHHcCCC-ccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCc
Q psy13453 553 SWLSSPACTELEVLVMNWLGKALGLP-EEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631 (764)
Q Consensus 553 ~~~~sp~~t~lE~~v~~~la~llG~p-~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~ 631 (764)
.|.......++.+.+.+|+.+..|++ -. ....++|+|++++...++.+.. . + ++
T Consensus 51 ~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~-------~~~I~it~G~~~~i~~~~~~l~---~-~--------------~g 105 (357)
T TIGR03539 51 GYPQTWGTPELREAIVDWLERRRGVPGLD-------PTAVLPVIGTKELVAWLPTLLG---L-G--------------PG 105 (357)
T ss_pred CCCcccCCHHHHHHHHHHHHHhcCCCCCC-------cCeEEEccChHHHHHHHHHHHc---C-C--------------CC
Confidence 34444556788889999999887765 21 2367889999998655433210 0 0 12
Q ss_pred eEEEecCCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc---cHHHHHH
Q psy13453 632 LVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD---NLEELGP 708 (764)
Q Consensus 632 ~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD---pl~eIa~ 708 (764)
-.|++.+-++.+...++..+|.+++.++ |++.++. ..+-+|+.+..++.+|.+- .+++|.+
T Consensus 106 d~Vl~~~p~y~~~~~~~~~~g~~~~~v~-------~~~~l~~---------~~~~~v~~~~p~NPtG~~~~~~~~~~i~~ 169 (357)
T TIGR03539 106 DTVVIPELAYPTYEVGALLAGATPVAAD-------DPTELDP---------VGPDLIWLNSPGNPTGRVLSVDELRAIVA 169 (357)
T ss_pred CEEEECCCCcHHHHHHHHhcCCEEeccC-------ChhhcCc---------cCccEEEEeCCCCCcCccCCHHHHHHHHH
Confidence 2577888899888888888898877663 2232221 1244677778889999875 5777899
Q ss_pred HHHhcCCEEEEeccccc
Q psy13453 709 ICQEYNIWLHVDAAYAG 725 (764)
Q Consensus 709 i~~~~glwLHVDaA~Gg 725 (764)
+|++||+|+++|.+|+.
T Consensus 170 ~a~~~~~~ii~De~y~~ 186 (357)
T TIGR03539 170 WARERGAVVASDECYLE 186 (357)
T ss_pred HHHHcCeEEEEecchhh
Confidence 99999999999999975
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00019 Score=80.11 Aligned_cols=168 Identities=10% Similarity=-0.025 Sum_probs=108.2
Q ss_pred chHHHHHHHHHHHHHHHcC----CCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceE
Q psy13453 558 PACTELEVLVMNWLGKALG----LPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633 (764)
Q Consensus 558 p~~t~lE~~v~~~la~llG----~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~v 633 (764)
+....+.+.+.+|+.+..| .++ ...++|+|+++++..++.+... + ++..
T Consensus 66 ~G~~~Lr~aia~~~~~~~~~~~~v~~---------~~I~it~Ga~~al~~~~~~~~~---~---------------g~~~ 118 (374)
T PRK02610 66 GGHEALKQAIAEYVNESAAGSSQITP---------ANISVGNGSDELIRSLLIATCL---G---------------GEGS 118 (374)
T ss_pred CchHHHHHHHHHHhCccccccCCCCH---------HHEEEcCChHHHHHHHHHHHcC---C---------------CCCe
Confidence 4556677777777766542 332 3578899999987655442211 1 1113
Q ss_pred EEecCCcchhHHHHHHhCCCceEEEecCC-CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHH-
Q psy13453 634 AYTSDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQ- 711 (764)
Q Consensus 634 i~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~-~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~- 711 (764)
|++.+-+......+++..|++++.+|.++ ++.+|+++|++++++.. +..+-+|+.+..++.||.+-+.+++.++.+
T Consensus 119 Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~--~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~ 196 (374)
T PRK02610 119 ILVAEPTFSMYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQ--NPPVRVVFVVHPNSPTGNPLTAAELEWLRSL 196 (374)
T ss_pred EEEcCCChHHHHHHHHHcCCEEEEecCCcccCCCCHHHHHHHHHhhc--CCCceEEEEeCCCCCCCCCCCHHHHHHHHhc
Confidence 56666667777888899999999999875 47899999999986421 122446666678999999977666665543
Q ss_pred hcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 712 EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 712 ~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
.+++|+.+|-+|.-+... +... .+....+ --+.-++-|.++.|
T Consensus 197 ~~~~~iI~De~Y~~~~~~-~~~~-~~~~~~~-~ivi~SfSK~~g~~ 239 (374)
T PRK02610 197 PEDILVVIDEAYFEFSQT-TLVG-ELAQHPN-WVILRTFSKAFRLA 239 (374)
T ss_pred cCCcEEEEeccccccCcc-chHH-HHhcCCC-EEEEEecchhccCc
Confidence 148999999999764211 1111 1111111 13457889988654
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=8.1e-05 Score=80.92 Aligned_cols=139 Identities=16% Similarity=0.051 Sum_probs=96.0
Q ss_pred HHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHH
Q psy13453 567 VMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEK 646 (764)
Q Consensus 567 v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~k 646 (764)
+.+++++.+|. ..++|+|+++++...+.+. .+ +..|++.+-+++...+
T Consensus 45 l~~~ia~~~~~------------~I~vt~G~~~al~~~~~~~----~~----------------gd~vlv~~P~y~~~~~ 92 (311)
T PRK08354 45 LEEEFSKLFGE------------PIVITAGITEALYLIGILA----LR----------------DRKVIIPRHTYGEYER 92 (311)
T ss_pred HHHHHHHHHCC------------CEEECCCHHHHHHHHHHhh----CC----------------CCeEEEeCCCcHHHHH
Confidence 45688888762 3689999999875443211 11 1247788899999999
Q ss_pred HHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc---HHHHHHHHHhcCCEEEEeccc
Q psy13453 647 SAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN---LEELGPICQEYNIWLHVDAAY 723 (764)
Q Consensus 647 Aa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp---l~eIa~i~~~~glwLHVDaA~ 723 (764)
+++..|.+++.++ +|++.|++.+.+ +-+|+.+..++.||.+-+ +++|+++|+++|+|+++|-+|
T Consensus 93 ~~~~~g~~~~~~~------~d~~~l~~~~~~-------~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y 159 (311)
T PRK08354 93 VARFFAARIIKGP------NDPEKLEELVER-------NSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAF 159 (311)
T ss_pred HHHHcCCEEeecC------CCHHHHHHhhcC-------CCEEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcc
Confidence 9999999887653 578888877642 225667788999999865 566777889999999999999
Q ss_pred cccccccchhhhhhcCCCccc-EEEEcCCccCCCC
Q psy13453 724 AGSALLLPEYAHLKRGLEYVD-SFDFNTHKWLLVN 757 (764)
Q Consensus 724 Gg~~l~~~~~r~~l~gie~aD-Sit~d~HK~l~~P 757 (764)
+.+..- .. . ...-. -+.-++-|.++.|
T Consensus 160 ~~f~~~-~~--~----~~~~~vi~~~S~SK~~~l~ 187 (311)
T PRK08354 160 IDFVKK-PE--S----PEGENIIKLRTFTKSYGLP 187 (311)
T ss_pred hhcccc-cc--c----cCCCcEEEEeccHhhcCCc
Confidence 775321 10 0 11112 3346778988755
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00012 Score=80.22 Aligned_cols=151 Identities=11% Similarity=-0.019 Sum_probs=98.8
Q ss_pred HHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhH
Q psy13453 565 VLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV 644 (764)
Q Consensus 565 ~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv 644 (764)
.++.+.+++.+|.++. ..++|+|++++...++.. ... +-+++. +-+....
T Consensus 43 ~~lr~~ia~~~~~~~~---------~I~it~Gs~~~l~~~~~~-----~~~---------------~~vv~~-~P~y~~y 92 (332)
T PRK06425 43 TDIEDQIKIYTQGLKI---------KVLIGPGLTHFIYRLLSY-----INV---------------GNIIIV-EPNFNEY 92 (332)
T ss_pred HHHHHHHHHHhCCCcc---------eEEECCCHHHHHHHHHHH-----hCC---------------CcEEEe-CCChHHH
Confidence 3455677888888763 578999999987665431 111 113444 5667777
Q ss_pred HHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc---HHHHHHHHHhcCCEEEEec
Q psy13453 645 EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN---LEELGPICQEYNIWLHVDA 721 (764)
Q Consensus 645 ~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp---l~eIa~i~~~~glwLHVDa 721 (764)
..+++..|++++.||+++ ..+|++.+++ . .+-+|+.+..++.||.+-+ +.+|+++|+++++|+.+|-
T Consensus 93 ~~~~~~~G~~v~~vp~~~-~~~~~~~l~~----~-----~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE 162 (332)
T PRK06425 93 KGYAFTHGIRISALPFNL-INNNPEILNN----Y-----NFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDE 162 (332)
T ss_pred HHHHHHcCCeEEEEeCCc-ccCcHHHHhh----c-----CCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEec
Confidence 888999999999999975 4456655542 1 2336666789999999754 6777778899999999999
Q ss_pred ccccccccc-chhhhhhcCCCcccE-EEEcCCccCCCC
Q psy13453 722 AYAGSALLL-PEYAHLKRGLEYVDS-FDFNTHKWLLVN 757 (764)
Q Consensus 722 A~Gg~~l~~-~~~r~~l~gie~aDS-it~d~HK~l~~P 757 (764)
+|+-+..-. +........- -.. +.-++.|.++.|
T Consensus 163 ~Y~~~~~~~~~~~~~~~~~~--~~vi~~~SfSK~~~l~ 198 (332)
T PRK06425 163 AFIDFVPNRAEEDVLLNRSY--GNVIIGRSLTKILGIP 198 (332)
T ss_pred chhccccccchhHHHHhccC--CCEEEEeecHHhcCCc
Confidence 998653211 1111111111 123 345889988754
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00018 Score=79.65 Aligned_cols=227 Identities=10% Similarity=-0.005 Sum_probs=135.0
Q ss_pred HHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccc-cCchhhhc-----CCCceec
Q psy13453 24 SFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDI-QSLNAPVS-----NGPLKVG 97 (764)
Q Consensus 24 v~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~i-Dpi~~ia~-----~~wlHVD 97 (764)
..-.|.+.|+.. +.|++|++|.+|+++|+++++++.+ .+.-|-++| +|.+ .+|.+|++ +.-+=.|
T Consensus 170 NPASAam~G~~V---V~V~~~~~G~VDlddLk~k~~~~~A-----alMiTnPsT-~GvFE~~I~ei~~ivH~~Gg~vY~D 240 (496)
T COG1003 170 NPASAAMAGFKV---VVVKCDENGNVDLDDLRAKAEDNLA-----ALMITNPST-LGVFEEDIREICEIVHEAGGQVYYD 240 (496)
T ss_pred ChhhHhhcCceE---EEEecCCCCCccHHHHHHHhcccee-----EEEeccCcc-cccchhhHHHHHHHHHHcCCEEEec
Confidence 345688999988 9999999999999999999997543 223555655 3444 56788776 6666777
Q ss_pred ccc---------------------ccc-cc----------eeeeecC--CCccccc--------cccccccCCcccCCCC
Q psy13453 98 GVL---------------------RRV-YS----------SCLVPRG--QKSLRTT--------VLFHFLFQHWQIPLGR 135 (764)
Q Consensus 98 a~l---------------------~~~-y~----------s~ll~rd--~~~l~~~--------~s~~~d~~d~tle~SR 135 (764)
|+- .|+ || +-+-++. ...|..- |...++.. +++.-++
T Consensus 241 GANlNA~vG~~rPGd~G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~-~s~g~~~ 319 (496)
T COG1003 241 GANLNAIVGLARPGDMGFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGK-KSIGVSA 319 (496)
T ss_pred CcchhhhhccccccccccceEEeecccccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCCC-ccceeec
Confidence 731 111 11 0111110 0001100 00001111 2222233
Q ss_pred ----cccHH-HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccC
Q psy13453 136 ----RFRAL-KLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISF 210 (764)
Q Consensus 136 ----r~~AL-klWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~ 210 (764)
.+.+| ..|+-++.+|.+|+++..+.++-+|+|++.+|+. .++++-.+.- -|.--+.-+. +... +
T Consensus 320 a~~Gs~~il~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~--~y~~~y~~~~-~~~HE~ild~-r~l~-------~ 388 (496)
T COG1003 320 APYGSASILPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKG--YYPVPYTGEN-RVAHECILDA-RPLK-------K 388 (496)
T ss_pred cccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhh--cCccccCCCC-cceeEEEeec-hHhH-------h
Confidence 23334 6699999999999999999999999999999996 6777665542 2221111000 0000 0
Q ss_pred CccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEec-cCCC--CCHHHHHHHHHHHHHHHHHHHccC
Q psy13453 211 GDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAI-CSSQ--TEESDVQLGWNEIRTATEEVLRGK 274 (764)
Q Consensus 211 ~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v-~np~--Tt~e~i~~~l~~l~~~~~~i~~~~ 274 (764)
+...-...+-++|..-|. ...+.-++..+.=++ +-|. -+++++|+|.+.+.++++++.+.+
T Consensus 389 ~~Gv~~~DvAKrLlD~Gf---HaPT~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~Ea~~~~ 452 (496)
T COG1003 389 ETGVRALDVAKRLLDYGF---HAPTMYFPLIVAGTLMIEPTESESKEELDRFIDAMIAIREEADAVP 452 (496)
T ss_pred hcCCcHHHHHHHHHhcCC---CCCcccCccccccceeecCCCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 111123467788888886 444444432222111 2332 256999999999999999987765
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00085 Score=75.02 Aligned_cols=220 Identities=9% Similarity=-0.025 Sum_probs=128.1
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEee-CCcccccccCchhhhc-----CCC
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYC-GRTLHQDIQSLNAPVS-----NGP 93 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatA-GTT~~G~iDpi~~ia~-----~~w 93 (764)
.|.|+..++.+++... +.++ .+|+++|+++|++....+..+.+|.+- -..++|.+.|++++++ ++|
T Consensus 131 ~~~s~~~~~~~~~~~~---~~~~-----~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~ 202 (393)
T TIGR01822 131 NHASIIDGVRLCKAKR---YRYA-----NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLADKYDAL 202 (393)
T ss_pred ccHHHHHHHHhcCCce---EEeC-----CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHHHHHHcCCE
Confidence 6778888888877544 3332 489999999998754433245554333 3568899999999886 899
Q ss_pred ceecccccccc----c-e------------eeeecCCCcccc---cccc-cc---c-----cCCcccCCCCcccH-HHHH
Q psy13453 94 LKVGGVLRRVY----S-S------------CLVPRGQKSLRT---TVLF-HF---L-----FQHWQIPLGRRFRA-LKLW 143 (764)
Q Consensus 94 lHVDa~l~~~y----~-s------------~ll~rd~~~l~~---~~s~-~~---d-----~~d~tle~SRr~~A-LklW 143 (764)
+++|+.....+ + + ++...-.+.+.. .+-. .. + ...+...++..... ..+.
T Consensus 203 li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~g~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~ 282 (393)
T TIGR01822 203 VMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKALGGASGGFTTARKEVVELLRQRSRPYLFSNSLPPAVVGASI 282 (393)
T ss_pred EEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHhhCCCcEEEEeCHHHHHHHHHhCccceecCCCCHHHHHHHH
Confidence 99999742110 0 0 110000111100 0000 00 0 01223333332221 2334
Q ss_pred HHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHH
Q psy13453 144 MTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRI 223 (764)
Q Consensus 144 atL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L 223 (764)
.+++.+ ++..++.++..++.+++.+.|++. ++++. .+...++.++..+ .....++.++|
T Consensus 283 ~al~~~--~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~i~~~~-----------------~~~~~~l~~~L 341 (393)
T TIGR01822 283 KVLEML--EASNELRDRLWANTRYFRERMEAA-GFDIK-PADHPIIPVMLYD-----------------AVLAQRFARRL 341 (393)
T ss_pred HHHHHH--hcCHHHHHHHHHHHHHHHHHHHHc-CCCCC-CCCCCEEEEEeCC-----------------HHHHHHHHHHH
Confidence 445443 345667778888899999999875 77764 3445566664321 01235788888
Q ss_pred HhcCcEEEEece--e-CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 224 IARKVIYIVKGS--F-QDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 224 ~~~G~~~vs~t~--l-~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
.++|.+...... . .+...+|+++.. .+++++++.+++.|+++.++
T Consensus 342 ~~~gI~v~~~~~~~~~~~~~~iRis~~~-~~t~edi~~~~~~l~~~~~~ 389 (393)
T TIGR01822 342 LEEGIYVTGFFYPVVPKGQARIRVQISA-AHTEEQLDRAVEAFTRIGRE 389 (393)
T ss_pred HHCCeeEeeeCCCCCCCCCceEEEEECC-CCCHHHHHHHHHHHHHHHHH
Confidence 888854432211 1 234568986554 56799999999999988654
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00024 Score=80.79 Aligned_cols=178 Identities=15% Similarity=0.026 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
+..+.++.+.|++++.-.- ....|+.+|||||..|++.||.....+ +.. .++-+|.....-
T Consensus 84 ~~~~~~la~~l~~~~p~~~---------~~v~f~~sGseA~e~A~klar~~~~~~-~~~---------~r~~ii~~~~~y 144 (423)
T PRK05964 84 HEPAERLAQRLVALTPGGL---------DHVFFSDSGSVAVEVALKMALQYWRNR-GEP---------GRSRFLSLRGGY 144 (423)
T ss_pred CHHHHHHHHHHHHhCCCCC---------CEEEEeCCcHHHHHHHHHHHHHHHHhc-CCC---------CCcEEEEEcCCc
Confidence 3455567777888763111 246899999999999999999864322 100 012244455555
Q ss_pred chhHHHHHHhCC----------C--ceEEEecCCC--CcccHHHHHHHHHHhhhcCCCceEEEEee-ccCCccc----cc
Q psy13453 641 NSSVEKSAIIGD----------V--PVRQLRSDDN--GVLRGDALLTAVKEDLAKGLIPCCLIATL-GTTGTCA----FD 701 (764)
Q Consensus 641 H~Sv~kAa~~lG----------l--~v~~Vp~d~~--g~md~~~Le~~I~~~~~~G~~p~~Vvata-GTT~~Ga----iD 701 (764)
|-...-+..+.+ + .+..+|...+ ...++++|++.|.+. +....+|+.-- -....|. -+
T Consensus 145 HG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~---~~~iaavi~Ep~i~~~gG~~~~~~~ 221 (423)
T PRK05964 145 HGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEALLEKH---AGEIAAFIVEPLVQGAGGMLFYDPR 221 (423)
T ss_pred CCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhC---CCcEEEEEEecccccCCCcccCCHH
Confidence 543333332221 1 2344544321 223478888888642 22333444432 1233343 34
Q ss_pred cHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 702 NLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 702 pl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
.+++|+++|++||+.|++|-++.|.-....-+.....|+ ..|-++++ |+++.. +.+|++
T Consensus 222 ~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~v-~pDi~~~~--K~l~gG~~p~~av 281 (423)
T PRK05964 222 YLAELRRICDRHGVLLIFDEIATGFGRTGTLFACEQAGV-SPDIMCLS--KGLTGGYLPLAAT 281 (423)
T ss_pred HHHHHHHHHHHcCCEEEEechhhCCCcCcchhHHHhcCC-CCCeeeee--hhhhcCcccceEE
Confidence 599999999999999999999876422111111122344 46777664 998766 455544
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00037 Score=76.75 Aligned_cols=151 Identities=15% Similarity=0.028 Sum_probs=102.1
Q ss_pred hHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecC
Q psy13453 559 ACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSD 638 (764)
Q Consensus 559 ~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~ 638 (764)
....+.+.+.+|+.+. +.++ ...++|+|+++++..++.+. . .|++.+
T Consensus 57 ~~~~Lr~aia~~~~~~-~~~~---------~~i~it~Ga~~~i~~~~~~~-----d------------------~v~v~~ 103 (335)
T PRK14808 57 PDEELIEKILSYLDTD-FLSK---------NNVSVGNGADEIIYVMMLMF-----D------------------RSVFFP 103 (335)
T ss_pred ChHHHHHHHHHHhCCC-CCCc---------ceEEEcCCHHHHHHHHHHHh-----C------------------cEEECC
Confidence 3444555555555432 1444 35789999999887766532 1 145566
Q ss_pred CcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEE
Q psy13453 639 QSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLH 718 (764)
Q Consensus 639 ~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLH 718 (764)
-++.....+++..|.+++.+|.++++.++... +. .+.+|+.+..++.||.+=+.+++.+++ ++++|+.
T Consensus 104 P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~----~~-------~~~~i~i~nP~NPTG~~~s~~~l~~l~-~~~~~ii 171 (335)
T PRK14808 104 PTYSCYRIFAKAVGAKFLEVPLTKDLRIPEVN----VG-------EGDVVFIPNPNNPTGHVFEREEIERIL-KTGAFVA 171 (335)
T ss_pred CCHHHHHHHHHHcCCeEEEecCCCcCCCChhH----cc-------CCCEEEEeCCCCCCCCCcCHHHHHHHH-hcCCEEE
Confidence 78888899999999999999998888766432 11 134777888999999999999999999 5899999
Q ss_pred EeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 719 VDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 719 VDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
+|-+|.-+. .......+...++ =-+.-++-|.++.|
T Consensus 172 ~DE~Y~~f~--~~~~~~~~~~~~~-vi~~~S~SK~~~l~ 207 (335)
T PRK14808 172 LDEAYYEFH--GESYVDLLKKYEN-LAVIRTFSKAFSLA 207 (335)
T ss_pred EECchhhhc--CCchHHHHHhCCC-EEEEEechhhccCc
Confidence 999997642 1111122222221 13456889988854
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00023 Score=79.43 Aligned_cols=193 Identities=9% Similarity=-0.042 Sum_probs=116.7
Q ss_pred CccccccCCCCCh-HHHHHHHHHHhhccc---C---ccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeC
Q psy13453 523 PQFNAYFPTGSSY-PSIVGDMLSGAFGLI---G---FSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQS 595 (764)
Q Consensus 523 P~~~~~~~~~~~~-~~~lad~l~~~lN~n---~---~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTs 595 (764)
.|-+.|.+++... ..++..+....+|-+ + ....-++.+.++-.++.+.|.++++.|++| .-.++++
T Consensus 6 ~~~~~f~pGP~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y-------~v~~l~G 78 (365)
T PLN02452 6 GRVFNFSAGPATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNY-------EVLFLQG 78 (365)
T ss_pred CceEeeeCCCCCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCc-------eEEEEeC
Confidence 3445666665544 456666666655421 1 222357888999999999999999998653 2344557
Q ss_pred ChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchh--HHHHHHhCCCceEEEecCCCC---cccHHH
Q psy13453 596 TASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSS--VEKSAIIGDVPVRQLRSDDNG---VLRGDA 670 (764)
Q Consensus 596 GgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~S--v~kAa~~lGl~v~~Vp~d~~g---~md~~~ 670 (764)
|||.+.-.++.. ..+. .+-+.|++ ..+++ +.+-|..+|...+........ -.++++
T Consensus 79 sgt~~~ea~~~n----l~~~--------------~~~~l~~~-~G~fg~r~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~ 139 (365)
T PLN02452 79 GASTQFAAIPLN----LCKP--------------GDKADFVV-TGSWSKKAAKEAKKYCKTNVIASGKDEKYTKIPSVSE 139 (365)
T ss_pred ccHHHHHHHHHh----cCCC--------------CCeEEEEE-CCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCCChHH
Confidence 777765443331 1111 01133332 44444 233344456533322222222 356666
Q ss_pred HHHHHHHhhhcCCCceEEEEeeccCCccc-cccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEc
Q psy13453 671 LLTAVKEDLAKGLIPCCLIATLGTTGTCA-FDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFN 749 (764)
Q Consensus 671 Le~~I~~~~~~G~~p~~VvataGTT~~Ga-iDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d 749 (764)
+ +.+ ..+-+|..|...|.+|. +.|++++.+ +.+.||++...+....+--+ + +-+..+
T Consensus 140 ~----~~~----~~~~~v~~~hnETstGv~~~~~~~i~~------~~lvVDa~Ss~g~~pidv~~-----~---~v~~~s 197 (365)
T PLN02452 140 W----ELT----PDAKFVHICANETIHGVEFKDYPDVGN------VPLVADMSSNFLSKPVDVSK-----Y---GVIYAG 197 (365)
T ss_pred c----CCC----CCCcEEEECCCCCCCcEecCcccccCC------CeEEEECCccccCcccCHHH-----c---CEEEEe
Confidence 4 211 12458999999999999 699888753 79999999887766554222 1 334469
Q ss_pred CCccCCCCcCceeeC
Q psy13453 750 THKWLLVNFDCSAMW 764 (764)
Q Consensus 750 ~HK~l~~P~~~g~l~ 764 (764)
.||.++ |.|.|+++
T Consensus 198 aqK~lG-P~Gl~~v~ 211 (365)
T PLN02452 198 AQKNVG-PSGVTIVI 211 (365)
T ss_pred cccccC-CCCeEEEE
Confidence 999886 99999874
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00032 Score=78.88 Aligned_cols=150 Identities=19% Similarity=0.168 Sum_probs=100.5
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
..|-...+|+ .|++|-|.. ..+.+++|..|+..++.+.. + +...|+
T Consensus 53 gnPt~~~le~----~la~Le~g~-----------~a~~~~SGmaAi~~~l~~ll----~---------------~Gd~iv 98 (386)
T PF01053_consen 53 GNPTVRALEQ----RLAALEGGE-----------DALLFSSGMAAISAALLALL----K---------------PGDHIV 98 (386)
T ss_dssp C-HHHHHHHH----HHHHHHT-S-----------EEEEESSHHHHHHHHHHHHS--------------------TTBEEE
T ss_pred ccccHHHHHH----HHHHhhccc-----------ceeeccchHHHHHHHHHhhc----c---------------cCCceE
Confidence 4566666666 557776542 36778888887766665431 1 111355
Q ss_pred ecCCcchh----HHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHH
Q psy13453 636 TSDQSNSS----VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQ 711 (764)
Q Consensus 636 ~S~~aH~S----v~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~ 711 (764)
++...-.. +.+-+...|+.+..++. -|+++|++++++.++ +|.+=..++.+.-+-||++|+++|+
T Consensus 99 ~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~-----~d~~~l~~~l~~~t~------~v~~EspsNP~l~v~Dl~~i~~~a~ 167 (386)
T PF01053_consen 99 ASDDLYGGTYRLLEELLPRFGVEVTFVDP-----TDLEALEAALRPNTK------LVFLESPSNPTLEVPDLEAIAKLAK 167 (386)
T ss_dssp EESSSSHHHHHHHHHCHHHTTSEEEEEST-----TSHHHHHHHHCTTEE------EEEEESSBTTTTB---HHHHHHHHH
T ss_pred ecCCccCcchhhhhhhhcccCcEEEEeCc-----hhHHHHHhhccccce------EEEEEcCCCcccccccHHHHHHHHH
Confidence 55553322 23334457888888765 368999999988543 8888889999999999999999999
Q ss_pred hcC-CEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 712 EYN-IWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 712 ~~g-lwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
++| +++.||..|+....+-| .. -| ||-+.-|..|+++..
T Consensus 168 ~~g~~~~vVDnT~atp~~~~p-L~---~G---aDivv~S~TKyl~Gh 207 (386)
T PF01053_consen 168 EHGDILVVVDNTFATPYNQNP-LE---LG---ADIVVHSATKYLSGH 207 (386)
T ss_dssp HTTT-EEEEECTTTHTTTC-G-GG---GT----SEEEEETTTTTTTS
T ss_pred HhCCceEEeeccccceeeecc-Cc---CC---ceEEEeeccccccCC
Confidence 999 99999999998755443 11 13 699999999998744
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00047 Score=78.66 Aligned_cols=155 Identities=17% Similarity=0.130 Sum_probs=104.3
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
..|-...+|+ .++++.|.+ ..++++||+.++..++.+..+ +...|+
T Consensus 81 ~~Pt~~~Le~----~lA~leg~~-----------~~iv~~sG~~Ai~~~l~al~~-------------------~Gd~Vv 126 (427)
T PRK07049 81 NHPNSEIVED----RLAVYEGAE-----------SAALFSSGMSAIATTLLAFVR-------------------PGDVIL 126 (427)
T ss_pred CCcCHHHHHH----HHHHHhCCC-----------cEEEEccHHHHHHHHHHHHhC-------------------CCCEEE
Confidence 3466666666 556666643 468899999987666543211 112355
Q ss_pred ecCCcchhHHHH----HHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHH
Q psy13453 636 TSDQSNSSVEKS----AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQ 711 (764)
Q Consensus 636 ~S~~aH~Sv~kA----a~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~ 711 (764)
+++-........ +...|++++.++ + + .|+++|++.|.+..++. .+-+|++...++.+|.+-|+++|.++|+
T Consensus 127 ~~~p~Y~~~~~~~~~~l~~~Gi~~v~~~-~--~-~d~~~l~~~l~~~~~~~-~tklv~lesP~NPtg~v~d~~~l~~la~ 201 (427)
T PRK07049 127 HSQPLYGGTETLLAKTFRNFGVGAVGFA-D--G-LSEAAIGAAAEAAAAKG-RVSLILIETPANPTNSLVDVAAVRRVAD 201 (427)
T ss_pred EcCCCcccHHHHHHHHHHhcCcEEEEEe-C--C-CCHHHHHHHHHhhccCC-CceEEEEECCCCCCCcccCHHHHHHHHH
Confidence 565555444333 455788766665 2 2 57888998887643322 3557777789999999999999999998
Q ss_pred h------cCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCC
Q psy13453 712 E------YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLV 756 (764)
Q Consensus 712 ~------~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~ 756 (764)
+ +++++.||.+|.......| .-. .+|-+.-++.|+++.
T Consensus 202 ~~~~~~~~~~~vvvDety~~~~~~~p----l~~---g~divv~S~SK~~gG 245 (427)
T PRK07049 202 AIEARQGHRPIIACDNTLLGPVFQKP----LEH---GADLSVYSLTKYVGG 245 (427)
T ss_pred HhhhcccCCCEEEEECCccccccCCc----ccc---CCCEEEEcCceeecC
Confidence 8 8999999999877543221 111 368999999999984
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00041 Score=78.31 Aligned_cols=215 Identities=10% Similarity=0.024 Sum_probs=127.4
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCc
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPL 94 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wl 94 (764)
.|+|+..+++.+|... ++.+ ..|+++|+++|++.. +-+++-.....++|.+-|+++|++ ++++
T Consensus 147 ~h~s~~~~~~~~g~~~-----~~~~---~~d~~~l~~~l~~~~----~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~~~l 214 (407)
T PRK07179 147 AHMSLWEGVRAAGAQA-----HPFR---HNDVDHLRRQIERHG----PGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVL 214 (407)
T ss_pred cCHHHHHHHHHCCCeE-----EEec---CCCHHHHHHHHHhcC----CeEEEECCCCCCCCccccHHHHHHHHHHcCCEE
Confidence 7899998888887653 3332 359999999997521 123445567789999999999876 8899
Q ss_pred eeccccccc-c---c-eeee-e--cCC-Cccccc----ccc--cc--------cc----CC-cccCCCCc-ccHHHHHHH
Q psy13453 95 KVGGVLRRV-Y---S-SCLV-P--RGQ-KSLRTT----VLF--HF--------LF----QH-WQIPLGRR-FRALKLWMT 145 (764)
Q Consensus 95 HVDa~l~~~-y---~-s~ll-~--rd~-~~l~~~----~s~--~~--------d~----~d-~tle~SRr-~~ALklWat 145 (764)
|+|.+.... + + +++- + ... +.+..+ +.. .+ ++ .. ....++-. ..+..+.++
T Consensus 215 ivDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g~~~G~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~aa~~aa 294 (407)
T PRK07179 215 VVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFAGRAGIITCPRELAEYVPFVSYPAIFSSTLLPHEIAGLEAT 294 (407)
T ss_pred EEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhhccCeEEEeCHHHHHHHHHhCcCeeeCCCCCHHHHHHHHHH
Confidence 999865211 1 0 0000 0 000 010000 000 00 00 00 01122221 122234455
Q ss_pred HHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHh
Q psy13453 146 LRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIA 225 (764)
Q Consensus 146 L~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~ 225 (764)
++.+ +...++.++..+++++|.+.|++. ++++.+ ..+++.+.+. ...-...+.+.|.+
T Consensus 295 l~~~--~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~~--~~~i~~l~~~-----------------~~~~~~~~~~~L~~ 352 (407)
T PRK07179 295 LEVI--ESADDRRARLHANARFLREGLSEL-GYNIRS--ESQIIALETG-----------------SERNTEVLRDALEE 352 (407)
T ss_pred HHHH--hcCHHHHHHHHHHHHHHHHHHHHc-CCCCCC--CCCEEEEEeC-----------------CHHHHHHHHHHHHH
Confidence 5554 223467788889999999999987 777663 3466777532 11112568888989
Q ss_pred cCcEEE---EeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 226 RKVIYI---VKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 226 ~G~~~v---s~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
+|.... ......+...+|+++.. .+++++++.+++.|+++.++
T Consensus 353 ~GI~~~~~~~p~~~~~~~~lRis~~~-~~t~edi~~~~~~l~~~~~~ 398 (407)
T PRK07179 353 RNVFGAVFCAPATPKNRNLIRLSLNA-DLTASDLDRVLEVCREARDE 398 (407)
T ss_pred CCceEeeecCCCCCCCCceEEEEECC-CCCHHHHHHHHHHHHHHHHh
Confidence 997521 11112345789997655 46789999999999987665
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00019 Score=78.01 Aligned_cols=151 Identities=17% Similarity=0.149 Sum_probs=105.0
Q ss_pred ccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceE
Q psy13453 554 WLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633 (764)
Q Consensus 554 ~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~v 633 (764)
....|-...+|+.+ +.|=|- ..++.+++|..|..+|+..--. . ...
T Consensus 58 Ri~NPT~~vlE~Ri----AaLEGG-----------~aa~a~aSG~AA~~~ai~~la~---a----------------GD~ 103 (426)
T COG2873 58 RIMNPTTDVLEERI----AALEGG-----------VAALAVASGQAAITYAILNLAG---A----------------GDN 103 (426)
T ss_pred eccCchHHHHHHHH----HHhhcc-----------hhhhhhccchHHHHHHHHHhcc---C----------------CCe
Confidence 34678888888744 444221 3456788888888888763211 0 112
Q ss_pred EEecCC----cchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHH
Q psy13453 634 AYTSDQ----SNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPI 709 (764)
Q Consensus 634 i~~S~~----aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i 709 (764)
|+.|.. ++.-+......+|+.++.|..++ ++.++++|+++++ +|.+=.=.+.-+.+-||++|++|
T Consensus 104 iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~~d-----~~~~~~aI~~nTk------avf~EtigNP~~~v~Die~ia~i 172 (426)
T COG2873 104 IVSSSKLYGGTYNLFSHTLKRLGIEVRFVDPDD-----PENFEAAIDENTK------AVFAETIGNPGLDVLDIEAIAEI 172 (426)
T ss_pred eEeeccccCchHHHHHHHHHhcCcEEEEeCCCC-----HHHHHHHhCcccc------eEEEEeccCCCccccCHHHHHHH
Confidence 333322 23334445678999999987653 9999999999876 44443334556888999999999
Q ss_pred HHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCC
Q psy13453 710 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLV 756 (764)
Q Consensus 710 ~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~ 756 (764)
|+++|++|.||-.++..+++-| .++ .||-|+=|.-||++.
T Consensus 173 Ah~~gvpliVDNT~atpyl~rP-~~h------GADIVvHS~TK~igG 212 (426)
T COG2873 173 AHRHGVPLIVDNTFATPYLCRP-IEH------GADIVVHSATKYIGG 212 (426)
T ss_pred HHHcCCcEEEecCCCcceecch-hhc------CCCEEEEeecccccC
Confidence 9999999999999999744433 332 479999999999874
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00088 Score=77.14 Aligned_cols=170 Identities=18% Similarity=0.073 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEE-EecCC
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVA-YTSDQ 639 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi-~~S~~ 639 (764)
+....++.+.|+++++.+- ....|+++|||||..|+++||...... +. ..+.+| .....
T Consensus 97 ~~~~~~lae~L~~~~p~~~---------~~v~f~~SGseA~e~AiklAr~~~~~~-g~----------~~r~~ii~~~~~ 156 (460)
T PRK12403 97 HPAVIELSELLFSLLPGHY---------SHAIYTNSGSEANEVLIRTVRRYWQVL-GK----------PQKKIMIGRWNG 156 (460)
T ss_pred CHHHHHHHHHHHHhCCCCc---------CEEEEeCCcHHHHHHHHHHHHHHHHhh-CC----------CCCcEEEEECCC
Confidence 3445556667777775221 246899999999999999999764221 10 012222 23344
Q ss_pred cchhHHHHHHhCCCc-----------eEEEecCCCC----c--------ccHHHHHHHHHHhhhcCCCceEEEEeeccCC
Q psy13453 640 SNSSVEKSAIIGDVP-----------VRQLRSDDNG----V--------LRGDALLTAVKEDLAKGLIPCCLIATLGTTG 696 (764)
Q Consensus 640 aH~Sv~kAa~~lGl~-----------v~~Vp~d~~g----~--------md~~~Le~~I~~~~~~G~~p~~VvataGTT~ 696 (764)
-|-+..-+..+.|.. +..+|..... . .+.++|++.+.+.. ...+.+|+.---...
T Consensus 157 yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~~--~~~iaavI~Epv~g~ 234 (460)
T PRK12403 157 YHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILELG--AENVAGFVAEPFQGA 234 (460)
T ss_pred cCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHhC--CCceEEEEEccccCC
Confidence 576665565554421 3344421100 1 12355666664321 123445555444444
Q ss_pred cccccc----HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCC
Q psy13453 697 TCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLL 755 (764)
Q Consensus 697 ~GaiDp----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~ 755 (764)
-|.+-| +++|.++|++||+.|++|-+++|+-....-+....-|++ .|-++ .-|.++
T Consensus 235 gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv~-PDiv~--~gK~lg 294 (460)
T PRK12403 235 GGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGFE-PDTLS--IAKGLT 294 (460)
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhhhhhcCCC-CCeEE--Eccccc
Confidence 577767 999999999999999999999875332222222223563 68776 578776
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0014 Score=75.10 Aligned_cols=166 Identities=14% Similarity=0.039 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
+....++.+.|++++..+. ....|+.+|||||-.|++.||....+. + +.-+|.....-
T Consensus 116 ~~~~~~lAe~L~~~~p~~~---------~~v~f~~SGsEA~e~AlklAr~~t~~~-g------------r~~ii~~~~~y 173 (442)
T TIGR03372 116 DPLRALLAKTLAALTPGKL---------KYSFFCNSGTESVEAALKLAKAYQSPR-G------------KFTFIAASGAF 173 (442)
T ss_pred CHHHHHHHHHHHHhCCCCc---------CEEEEeCCchHHHHHHHHHHHHHHhhc-C------------CcEEEEECCCc
Confidence 3445567777777763221 236899999999999999999764211 0 01244455555
Q ss_pred chhHHHHHHhCC------------CceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc----HH
Q psy13453 641 NSSVEKSAIIGD------------VPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN----LE 704 (764)
Q Consensus 641 H~Sv~kAa~~lG------------l~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp----l~ 704 (764)
|=...-+..+.| -.+..+|.+ |.+++++.+++....+....+|+.---...-|.+-| ++
T Consensus 174 HG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~-----d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~ 248 (442)
T TIGR03372 174 HGKSLGALSATAKPAFRKPFMPLLPGFHHVAFG-----DIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLP 248 (442)
T ss_pred cCCCHHHhhccCCcccCCCCCCCCCCCEEeCCC-----CHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHH
Confidence 644333333222 124455543 467888888654444445556665544455677777 99
Q ss_pred HHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCC
Q psy13453 705 ELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLV 756 (764)
Q Consensus 705 eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~ 756 (764)
+|+++|++||+.|++|-++.|+-..-.-+.....|+ ..|-++ .-|.++.
T Consensus 249 ~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv-~PDivt--~gK~lg~ 297 (442)
T TIGR03372 249 AVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGV-QPDILC--LAKALGG 297 (442)
T ss_pred HHHHHHHHcCCEEEEeecccCCCccccchhhhhcCC-CCCeee--ehhhhcC
Confidence 999999999999999999976322111112222355 468666 5787763
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00083 Score=74.91 Aligned_cols=214 Identities=11% Similarity=0.062 Sum_probs=123.3
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccCchhhhc-----CCC
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQSLNAPVS-----NGP 93 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDpi~~ia~-----~~w 93 (764)
.|.|+..+++++. +. .+.. ...|+++|++.|++....+.++.+ +.+....++|.+-|+++|++ +++
T Consensus 104 ~H~sv~~~~~~~~-~~--~~~~-----~~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~pl~eI~~l~~~~~~~ 175 (370)
T PRK05937 104 VHISVVYSLSVIS-GW--HQSF-----RHNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAPLEQIIALSKKYHAH 175 (370)
T ss_pred hhHHHHHHHHHcC-Cc--eEEe-----cCCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCE
Confidence 7999999999875 21 1222 257899999999876543333445 35677889999999999887 889
Q ss_pred ceeccccccc-c---c-eee-eec--CC----Ccccccccc-------ccc--------cCCcccCCCC-cccHHHHHHH
Q psy13453 94 LKVGGVLRRV-Y---S-SCL-VPR--GQ----KSLRTTVLF-------HFL--------FQHWQIPLGR-RFRALKLWMT 145 (764)
Q Consensus 94 lHVDa~l~~~-y---~-s~l-l~r--d~----~~l~~~~s~-------~~d--------~~d~tle~SR-r~~ALklWat 145 (764)
+|||++.... + + ++. ... +. .++...+.. ..+ ...+..+.+- ...++.+.++
T Consensus 176 livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~g~~G~~vl~~~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aa 255 (370)
T PRK05937 176 LIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKALGSMGAALLSSSEVKQDLMLNSPPLRYSTGLPPHLLISIQVA 255 (370)
T ss_pred EEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhhhcCceEEEcCHHHHHHHHHhCCCCeecCCCCHHHHHHHHHH
Confidence 9999965321 1 0 000 000 00 000000000 000 0111222221 2223344566
Q ss_pred HHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHh
Q psy13453 146 LRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIA 225 (764)
Q Consensus 146 L~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~ 225 (764)
+..+-.+| ....++..++.++|.+.+.... +. .++.|... .. -...+.+.|.+
T Consensus 256 l~~l~~~~-~~~~~~l~~l~~~l~~~l~~~~-------~~-~~~~i~~~----------------~~--~~~~~~~~L~~ 308 (370)
T PRK05937 256 YDFLSQEG-ELARKQLFRLKEYFAQKFSSAA-------PG-CVQPIFLP----------------GI--SEQELYSKLVE 308 (370)
T ss_pred HHHHHhCc-HHHHHHHHHHHHHHHHhcCCCC-------CC-CEEEEEeC----------------Ch--hHHHHHHHHHH
Confidence 66664444 3455777788888888876421 10 11223321 11 13578888888
Q ss_pred cCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 226 RKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 226 ~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
+|... +........++|++ .+..+|++|++.+++.|+++.+++
T Consensus 309 ~gi~v-~~~~~~~~~~iRis-~~~~~t~edid~l~~~L~~~~~~~ 351 (370)
T PRK05937 309 TGIRV-GVVCFPTGPFLRVN-LHAFNTEDEVDILVSVLATYLEKY 351 (370)
T ss_pred CCeeE-EeeCCCCCCEEEEE-cCCCCCHHHHHHHHHHHHHHHHHh
Confidence 88743 32222334579995 667778999999999999887664
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0015 Score=74.40 Aligned_cols=178 Identities=13% Similarity=0.095 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEe-CChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCC
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQ-STASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQ 639 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfT-sGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~ 639 (764)
+....++.+.|++++..|... ...-.|+ .+|||||-.|++.||... .+ +-+|.....
T Consensus 81 ~~~~~~lae~l~~~~~~~~~~------~~~~~f~~~sGseA~e~AlklAr~~t-gr---------------~~ii~~~~~ 138 (425)
T PRK09264 81 TTAKREFLETFEETILKPRGL------DYKVQFTGPTGTNAVEAALKLARKVT-GR---------------TNIVAFTNG 138 (425)
T ss_pred cHHHHHHHHHHHHhhcCCcCC------CceEEEeCCCHHHHHHHHHHHHHHhc-CC---------------CeEEEECCc
Confidence 345556677777765333210 0123464 799999999999999752 11 113334444
Q ss_pred cchhHHHHHHhC---------CC---ceEEEecCCCC--c-ccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc----
Q psy13453 640 SNSSVEKSAIIG---------DV---PVRQLRSDDNG--V-LRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---- 700 (764)
Q Consensus 640 aH~Sv~kAa~~l---------Gl---~v~~Vp~d~~g--~-md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---- 700 (764)
-|=...-+..+. |. .+..+|..... . =|+++|++.|++.......+.+|+.---....|.+
T Consensus 139 yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~ 218 (425)
T PRK09264 139 FHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASA 218 (425)
T ss_pred cCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCH
Confidence 453332222221 11 35566653211 1 26788888886542211234455544433344543
Q ss_pred ccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCC-CcCceee
Q psy13453 701 DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLV-NFDCSAM 763 (764)
Q Consensus 701 Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~-P~~~g~l 763 (764)
+.+++|+++|++||++|++|-.+.|+-....-+.....|+ ..|-++++ |.++. -+.+|++
T Consensus 219 ~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v-~PDi~t~~--K~l~~~G~pigav 279 (425)
T PRK09264 219 EWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGI-TPDIVTLS--KSISGYGLPMALV 279 (425)
T ss_pred HHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCC-CCCEEEec--cccCCCccceEEE
Confidence 5899999999999999999999987422111111222345 46877774 97754 2334543
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00082 Score=75.76 Aligned_cols=164 Identities=12% Similarity=-0.006 Sum_probs=98.1
Q ss_pred ccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceE
Q psy13453 554 WLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633 (764)
Q Consensus 554 ~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~v 633 (764)
|...+....+-+.+.+++.+. +.++ ...++|+|++++... +. + .+.. .-.
T Consensus 71 Y~p~~g~~~lr~aia~~~~~~-~~~~---------d~I~it~Ga~~al~~-l~-~---l~~~---------------gd~ 120 (402)
T TIGR03542 71 YGPEQGYPFLREAIAENDYRG-RIDP---------EEIFISDGAKCDVFR-LQ-S---LFGS---------------DNT 120 (402)
T ss_pred CCCCCCCHHHHHHHHHHHHhc-CCCH---------HHEEECCCcHHHHHH-HH-H---hcCC---------------CCE
Confidence 433445555656566654321 3443 367899999887654 22 1 1111 113
Q ss_pred EEecCCcchhHHHHHHhCCC-----------ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc
Q psy13453 634 AYTSDQSNSSVEKSAIIGDV-----------PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN 702 (764)
Q Consensus 634 i~~S~~aH~Sv~kAa~~lGl-----------~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp 702 (764)
|++..-++......++..|+ .+..||+++++.++++..+ . ..+-+|+.+..++.||.+=+
T Consensus 121 Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~--------~~~~~i~l~nP~NPTG~~~s 191 (402)
T TIGR03542 121 VAVQDPVYPAYVDSNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPE-E--------PKIDIIYLCSPNNPTGTVLT 191 (402)
T ss_pred EEEeCCCCcchHHHHHHcCCccccccccccceEEEeecchhhCCCCCccc-c--------CCceEEEEeCCCCCCCccCC
Confidence 56666667777888888999 8899998754333333111 0 12336666788999999855
Q ss_pred ---HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcc-c-EE-EEcCCccCCCC
Q psy13453 703 ---LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYV-D-SF-DFNTHKWLLVN 757 (764)
Q Consensus 703 ---l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~a-D-Si-t~d~HK~l~~P 757 (764)
+++|+++|++||+|+++|.+|.-... .+.....+..+... + .| .-++-|.++.|
T Consensus 192 ~~~~~~l~~~a~~~~~~iI~De~y~~~~~-~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~p 251 (402)
T TIGR03542 192 KEQLKELVDYANEHGSLILFDAAYSAFIS-DPSLPHSIFEIPGAKECAIEFRSFSKTAGFT 251 (402)
T ss_pred HHHHHHHHHHHHHcCeEEEEEchhhhhcc-CCCCCcchhhCCCCcccEEEEecCccccCCC
Confidence 88899999999999999999986431 11111111122111 1 22 56888988654
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0014 Score=76.31 Aligned_cols=173 Identities=15% Similarity=0.056 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
+..+.++.+.|.+++.-.+ .....|+++|||||..|+++||...... +.. .++-+|.....-
T Consensus 132 ~~~~~~lae~L~~~~~~~~--------~~~v~f~~SGsEA~e~AlKlAr~~~~~~-g~~---------~r~~iI~~~~~y 193 (504)
T PLN02760 132 TKPSLDLAKELLEMFTARK--------MGKVFFTNSGSEANDTQVKLVWYYNNAL-GRP---------NKKKFIARSKSY 193 (504)
T ss_pred cHHHHHHHHHHHhhcCCCC--------CCEEEEeCChHHHHHHHHHHHHHHHHhc-CCC---------CCcEEEEECCCc
Confidence 3445555666666653211 0246789999999999999998753211 100 013356677778
Q ss_pred chhHHHHHHhCCCc------------eEEEecCCCCc-------------ccHHHHHHHHHHhhhcCCCceEEEEeeccC
Q psy13453 641 NSSVEKSAIIGDVP------------VRQLRSDDNGV-------------LRGDALLTAVKEDLAKGLIPCCLIATLGTT 695 (764)
Q Consensus 641 H~Sv~kAa~~lGl~------------v~~Vp~d~~g~-------------md~~~Le~~I~~~~~~G~~p~~VvataGTT 695 (764)
|-+..-+..+.|.. +..++.....+ ...++|++.|.+. .+..+.+|++---..
T Consensus 194 HG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~iAAvI~EPv~g 271 (504)
T PLN02760 194 HGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLADNLENLILKE--GPETIAAFIAEPVMG 271 (504)
T ss_pred cCChHhhhhccCChhhccCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHHHHHHHHHHHhc--CCCceEEEEECCccC
Confidence 87766665544431 23333221111 1235577776432 122344555433334
Q ss_pred Ccccccc----HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCC
Q psy13453 696 GTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLV 756 (764)
Q Consensus 696 ~~GaiDp----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~ 756 (764)
..|.+-| +++|+++|++||+.|++|-++.|+-...+-+....-|+ ..|-+++ -|.++.
T Consensus 272 ~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv-~PDivtl--gK~lgg 333 (504)
T PLN02760 272 AGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNI-KPDLVSL--AKALSS 333 (504)
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCC-CCcEEEe--cccccC
Confidence 4577877 99999999999999999999966533333233333466 3785554 677654
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0011 Score=73.38 Aligned_cols=214 Identities=10% Similarity=-0.011 Sum_probs=128.8
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccCchhhhc-----CCC
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQSLNAPVS-----NGP 93 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDpi~~ia~-----~~w 93 (764)
.|++..+++.+.|... +.+|. .|++.+++.++... .++.+ +.....+++|.++|++++++ ++|
T Consensus 132 ~~~~~~~~~~~~g~~~---~~~~~-----~d~~~l~~~i~~~~---~~~~lvi~~~~~~~~G~~~~l~~i~~ia~~~~~~ 200 (385)
T PRK05958 132 NHASLIDGARLSRARV---RRYPH-----NDVDALEALLAKWR---AGRALIVTESVFSMDGDLAPLAELVALARRHGAW 200 (385)
T ss_pred cCHHHHHHHHhcCCce---EEeCC-----CCHHHHHHHHHhcc---CCCeEEEEEecccCCCCcCCHHHHHHHHHHhCCE
Confidence 6788889999988876 77775 38999999997531 12344 44445678899999999886 899
Q ss_pred ceeccccccc-c---c-eeee---ec-CCC-----cccccccc-------ccc-------c-CCcccCCCC-cccHHHHH
Q psy13453 94 LKVGGVLRRV-Y---S-SCLV---PR-GQK-----SLRTTVLF-------HFL-------F-QHWQIPLGR-RFRALKLW 143 (764)
Q Consensus 94 lHVDa~l~~~-y---~-s~ll---~r-d~~-----~l~~~~s~-------~~d-------~-~d~tle~SR-r~~ALklW 143 (764)
+++|...... + + ++.. .. ... ++...|.. ..+ . ..+...++- ...+..++
T Consensus 201 li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~ 280 (385)
T PRK05958 201 LLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGSSGAAVLGSETLIDYLINRARPFIFTTALPPAQAAAAR 280 (385)
T ss_pred EEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhcccCCcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHH
Confidence 9999975211 1 1 0100 00 001 00100100 000 0 011122222 22233456
Q ss_pred HHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHH
Q psy13453 144 MTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRI 223 (764)
Q Consensus 144 atL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L 223 (764)
++|+.+-.. .++.++..++.+++.+.|++. ++++ .+|..+++.|++. + .....++.++|
T Consensus 281 aal~~~~~~--~~~~~~~~~~~~~l~~~L~~~-~~~~-~~~~~~~~~~~~~----------------~-~~~~~~~~~~l 339 (385)
T PRK05958 281 AALRILRRE--PERRERLAALIARLRAGLRAL-GFQL-MDSQSAIQPLIVG----------------D-NERALALAAAL 339 (385)
T ss_pred HHHHHHhcC--HHHHHHHHHHHHHHHHHHHHc-CCCc-CCCCCCEEEEEeC----------------C-HHHHHHHHHHH
Confidence 666655322 567788889999999999975 5664 4567777888642 0 11235788899
Q ss_pred HhcCcEEEEece---eCCeeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 224 IARKVIYIVKGS---FQDRLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 224 ~~~G~~~vs~t~---l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
.+.|........ -.+..++|+++ +..+++++++.+++.|+++
T Consensus 340 ~~~gI~v~~~~~~~~~~~~~~lRis~-~~~~~~~~i~~~l~~l~~~ 384 (385)
T PRK05958 340 QEQGFWVGAIRPPTVPAGTSRLRITL-TAAHTEADIDRLLEALAEA 384 (385)
T ss_pred HHCCceEecccCCCCCCCCceEEEEe-cCCCCHHHHHHHHHHHHhc
Confidence 888875542111 12456899975 3456799999999988764
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0011 Score=75.54 Aligned_cols=172 Identities=15% Similarity=0.011 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
..+.++.+.|++++. .. .....|+++|||||..|+++||... .+ +-+|.....-|
T Consensus 86 ~~~~~la~~L~~~~~--~~-------~~~v~f~~SGseA~e~AlklAr~~t-gr---------------~~ii~~~~~yH 140 (433)
T PRK08117 86 ESILKLAEELAEITP--GG-------LDCFFFSNSGAEAIEGALKLAKHVT-KR---------------PYIISFTGCFH 140 (433)
T ss_pred HHHHHHHHHHHHhCC--CC-------CCEEEEeCcHHHHHHHHHHHHHHhc-CC---------------CeEEEECCCcC
Confidence 455666667777762 11 0246789999999999999999752 10 22455566667
Q ss_pred hhHHHHHHhCCC-------------ceEEEecCCCCc------------ccHHHHHHHHHHhhhcCCCceEEEEeeccCC
Q psy13453 642 SSVEKSAIIGDV-------------PVRQLRSDDNGV------------LRGDALLTAVKEDLAKGLIPCCLIATLGTTG 696 (764)
Q Consensus 642 ~Sv~kAa~~lGl-------------~v~~Vp~d~~g~------------md~~~Le~~I~~~~~~G~~p~~VvataGTT~ 696 (764)
-+..-+..+.+- .+..+|.....+ -+.++|++.+++... +..+.+|+.---...
T Consensus 141 G~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~aavi~Epi~~~ 219 (433)
T PRK08117 141 GRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVT-PEEVAAVIIEPVLGE 219 (433)
T ss_pred CcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHhccC-CCcEEEEEECCeeCC
Confidence 665544433210 244555432222 156777777764222 223445554444444
Q ss_pred cccccc----HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCcee
Q psy13453 697 TCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSA 762 (764)
Q Consensus 697 ~GaiDp----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~ 762 (764)
.|.+-| +++|+++|++||+.|.+|-+|+|.-....-+.....|+ ..|- +.+-|.++.-+.+|+
T Consensus 220 ~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv-~pDi--~t~sK~lg~G~piga 286 (433)
T PRK08117 220 GGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGV-VPDI--MTIAKGIASGLPLSA 286 (433)
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhcCC-CCCE--eehhhhccCCCccee
Confidence 577777 99999999999999999999997322111111111244 2454 466788774344444
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0007 Score=77.80 Aligned_cols=224 Identities=13% Similarity=0.045 Sum_probs=133.7
Q ss_pred eeeHHHHHhhcCCCCCCeEEecCC-CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCc
Q psy13453 21 IYESFKATHSLSGTPDQVRLSGLP-DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPL 94 (764)
Q Consensus 21 ~YSv~KAa~~LGl~~~~v~~Vpvd-~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wl 94 (764)
|+|.-....+.|+-. .++.-++| +++.+|++++++.+.+. +|.++-+ |...+|.+-|+.++++ +.++
T Consensus 179 Hlthg~~~n~~~~~~-~~~~y~vd~~~g~iD~d~l~~~~~~~-----~plvii~-g~S~~~~~~dl~~i~eia~~~gA~L 251 (493)
T PRK13580 179 HLTHGFRPNISGKMF-HQRSYGVDPDTGLLDYDEIAALAREF-----KPLILVA-GYSAYPRRVNFAKLREIADEVGAVL 251 (493)
T ss_pred eeecCcccchhhhee-eeEecccCcccCccCHHHHHHHHhhc-----CCEEEEe-CccccCCCcCHHHHHHHHHHcCCEE
Confidence 444433344444332 33567777 57999999999999874 5776433 4444466768888775 7889
Q ss_pred eeccccccc---------------cceeeeecCCCccccc---ccc-c------cccCCcccCCCCcccHH-HHHHHHHH
Q psy13453 95 KVGGVLRRV---------------YSSCLVPRGQKSLRTT---VLF-H------FLFQHWQIPLGRRFRAL-KLWMTLRS 148 (764)
Q Consensus 95 HVDa~l~~~---------------y~s~ll~rd~~~l~~~---~s~-~------~d~~d~tle~SRr~~AL-klWatL~~ 148 (764)
.||+++... ++-++...-.+++.+. |-. . .+.....+.++=-.-++ ..=.+++.
T Consensus 252 ~VD~AH~~Gligg~~~~~~~~~~~~~D~vtgT~hKaL~GP~GG~I~~~~~l~~~L~~a~P~i~gg~l~p~iAA~avAl~e 331 (493)
T PRK13580 252 MVDMAHFAGLVAGKVFTGDEDPVPHADIVTTTTHKTLRGPRGGLVLAKKEYADAVDKGCPLVLGGPLPHVMAAKAVALAE 331 (493)
T ss_pred EEECchhhceeccccchhhcCCCCCCcEEEeCChhhccCCCeEEEEecHHHHHHHhhCCCcccCCCccHHHHHHHHHHHH
Confidence 999965221 1112222222222111 000 0 11122334444422222 22334555
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeC-CCCceeEEEEeeccccccccccccCccCCccHHH-HHHHHHHHhc
Q psy13453 149 YGLKGLQAYLRKHISLAKKFADLVEQDDRFELVC-PPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLN-KAVYDRIIAR 226 (764)
Q Consensus 149 lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~-~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n-~~L~~~L~~~ 226 (764)
+-...+.++.++..+++++|++.+++. ||.++. ..+..+|..... .+..+ ..+.++|.+.
T Consensus 332 ~~~~ef~~y~~~l~~Na~~La~~L~~~-G~~vv~ggTdshIV~V~lg-----------------~~~~~g~~a~~~L~e~ 393 (493)
T PRK13580 332 ARTPEFQKYAQQVVDNARALAEGFLKR-GARLVTGGTDNHLVLIDVT-----------------SFGLTGRQAESALLDA 393 (493)
T ss_pred HhCccHHHHHHHHHHHHHHHHHHHHhc-CCCccCCCCCCCEEEEEeC-----------------CHHHHHHHHHHHHHHC
Confidence 544567888999999999999999984 898874 245677776542 12234 3677788899
Q ss_pred CcEEEEece---e-CC---eeEEEEeccCCCC---CHHHHHHHHHHHHHHHHHH
Q psy13453 227 KVIYIVKGS---F-QD---RLFMRFAICSSQT---EESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 227 G~~~vs~t~---l-~g---~~~LRi~v~np~T---t~e~i~~~l~~l~~~~~~i 270 (764)
|.. ++... . .+ ...||+++.-.++ ++++++.+.+.|.++.+..
T Consensus 394 GI~-vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~~~ 446 (493)
T PRK13580 394 GIV-TNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLSNT 446 (493)
T ss_pred CeE-EccccCCCCCCCCCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHHhh
Confidence 863 33221 1 33 5679997665444 6899999999998877643
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00034 Score=77.70 Aligned_cols=210 Identities=12% Similarity=0.042 Sum_probs=125.9
Q ss_pred HHhhcCCCCCCeEEecCCCCCcc-c-HHHHHHHHHHHhhCCCCcEEEEeeCCcccccc-cCchhhhcCCCceecccc---
Q psy13453 27 ATHSLSGTPDQVRLSGLPDSEWL-A-YLTLRTIYESFRKSFLCPMCSGYCGRTLHQDI-QSLNAPVSNGPLKVGGVL--- 100 (764)
Q Consensus 27 Aa~~LGl~~~~v~~Vpvd~~~rm-D-~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~i-Dpi~~ia~~~wlHVDa~l--- 100 (764)
-|+-.|+.. +.+++++++.. + ++..+..+++ ++-++..|-..|.+|.+ +++.+. .++.+-|||.-
T Consensus 105 ~a~~~g~~~---~~~~~~~~g~~~~~~~~~~~~~~~-----~~~lV~~~h~~t~tG~~~~~i~~~-~g~~~~VDa~qs~g 175 (355)
T cd00611 105 EAKRYGGVV---VIVAAKEEGKYTKIPDVETWDLAP-----DAAYVHYCSNETIHGVEFDEVPDT-GGVPLVADMSSNIL 175 (355)
T ss_pred HHHhcCCCc---EEEecccccCCCCCCCHhhcCCCC-----CCCEEEEeCCcccccEEcceeccc-CCCeEEEEcccccc
Confidence 456668766 88888765433 5 3333333432 23355578889999998 444443 25677788831
Q ss_pred ---------------cc----ccc-eeeeecCCCccccccccccccCCcc-------cCCCC-cccHHHHHHHHHHccHH
Q psy13453 101 ---------------RR----VYS-SCLVPRGQKSLRTTVLFHFLFQHWQ-------IPLGR-RFRALKLWMTLRSYGLK 152 (764)
Q Consensus 101 ---------------~~----~y~-s~ll~rd~~~l~~~~s~~~d~~d~t-------le~SR-r~~ALklWatL~~lG~e 152 (764)
.| +.+ ++++.+.+. +...-....++.++. .-++= -.....+.++++++=.+
T Consensus 176 ~~~idv~~~~~~~ss~~K~lGP~G~g~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~ 254 (355)
T cd00611 176 SRPIDVSKFGVIYAGAQKNLGPAGVTVVIVRKDL-LGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQ 254 (355)
T ss_pred CCCCCHHHhCEEEeecccccCCCceEEEEECHHH-HhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHc
Confidence 11 122 344444321 111000000111110 01222 22345889999999888
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhcCCCeE-EeCCC--Cc-eeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcC
Q psy13453 153 -GLQAYLRKHISLAKKFADLVEQDDRFE-LVCPP--SM-GLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARK 227 (764)
Q Consensus 153 -Gy~~~i~~~i~lA~~l~~~I~~~p~~e-ll~~P--~l-~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G 227 (764)
|+.++.++..++++++.+.|++.|++. ...+| .. .+++|++. +. .++.+..+.+.+.|
T Consensus 255 gg~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvsf~~~----------------~~-~l~~~~~~~~~r~G 317 (355)
T cd00611 255 GGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRLG----------------KE-ELEKEFLKEAEAAG 317 (355)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCccccccCCCHHHcCceEEEEEcC----------------Ch-hhhHHHHHHHHHCC
Confidence 799999999999999999999999864 22222 23 46889753 11 34455667778889
Q ss_pred cEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 228 VIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 228 ~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
.. .....+....+|+++ .+.++.+||+.+++.|+++
T Consensus 318 ~~--~~~~~~~~g~vR~S~-~~~nt~edi~~l~~al~~~ 353 (355)
T cd00611 318 MI--GLKGHRSVGGIRASI-YNALSLEGVQALADFMKEF 353 (355)
T ss_pred Cc--ccCCCcccCeEEEEc-cCCCCHHHHHHHHHHHHHH
Confidence 84 222222234799976 6666799999999999885
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0006 Score=75.45 Aligned_cols=159 Identities=15% Similarity=0.017 Sum_probs=99.0
Q ss_pred HHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHH
Q psy13453 566 LVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVE 645 (764)
Q Consensus 566 ~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~ 645 (764)
.+.+.+++.++.+++ ..++|+|++++..+++.+. .. +...|++.+-+.....
T Consensus 69 ~lr~~ia~~~~~~~~---------~I~it~G~~~al~~~~~~~----~~---------------~gd~V~v~~P~y~~~~ 120 (357)
T PRK14809 69 DLTAALADRWDVSPE---------QVWLANGGDGALDYLARAM----LD---------------PGDTVLVPDPGFAYYG 120 (357)
T ss_pred HHHHHHHHHhCCCcc---------eEEECCCHHHHHHHHHHHh----cC---------------CCCEEEEeCCChHHHH
Confidence 455566666677553 5789999999876655432 11 1123455554444455
Q ss_pred HHHHhCCCceEEEecCC--CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhc--CCEEEEec
Q psy13453 646 KSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEY--NIWLHVDA 721 (764)
Q Consensus 646 kAa~~lGl~v~~Vp~d~--~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~--glwLHVDa 721 (764)
..+...|.+++.+|++. ++.+|.+++++.+. . +-+|+.+..++.||.+-+.+++.++++.. ++|+.+|.
T Consensus 121 ~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~------~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~~~~iI~De 193 (357)
T PRK14809 121 MSARYHHGEVREYPVSKADDFEQTADTVLDAYD-G------ERIVYLTSPHNPTGSEIPLDEVEALAERTDEETLVVVDE 193 (357)
T ss_pred HHHHHcCCeEEEEecccCcCCCcCHHHHHHhhc-C------CcEEEEeCCCCCCCcCCCHHHHHHHHHhCccCcEEEEec
Confidence 56778899999998853 46778887776542 1 22666678999999998887777777653 79999999
Q ss_pred cccccccccchhhhhhcCCCcccEE-EEcCCccCCCC-cCcee
Q psy13453 722 AYAGSALLLPEYAHLKRGLEYVDSF-DFNTHKWLLVN-FDCSA 762 (764)
Q Consensus 722 A~Gg~~l~~~~~r~~l~gie~aDSi-t~d~HK~l~~P-~~~g~ 762 (764)
+|+.... .+.....+..-+ ..+ .-++-|.++.| +-+|.
T Consensus 194 ~y~~~~~-~~~~~~~~~~~~--~vi~~~SfSK~~~~~GlRiG~ 233 (357)
T PRK14809 194 AYGEFAE-RPSAVALVEERD--DVAVLRTFSKAYGLAGLRLGY 233 (357)
T ss_pred hhhhccC-CchhHHHHhhCC--CEEEEecchhHhcCcchhhee
Confidence 9986432 111111111111 233 45888988754 33443
|
|
| >KOG0259|consensus | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0011 Score=72.36 Aligned_cols=114 Identities=13% Similarity=0.158 Sum_probs=84.4
Q ss_pred CcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHH-HHhCCCceEEEec--CCCCc
Q psy13453 589 GGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKS-AIIGDVPVRQLRS--DDNGV 665 (764)
Q Consensus 589 ~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kA-a~~lGl~v~~Vp~--d~~g~ 665 (764)
.+.++|+|.++|+-+++.+--+ + +--|+++.-. |.+..+ |...|+.||+... +++++
T Consensus 127 ~DV~ltsGC~qAIe~~i~~LA~---p----------------~aNILlPrPG-fp~Y~~~a~~~~lEVR~ydlLPe~~we 186 (447)
T KOG0259|consen 127 DDVVLTSGCSQAIELAISSLAN---P----------------GANILLPRPG-FPLYDTRAIYSGLEVRYYDLLPEKDWE 186 (447)
T ss_pred CceEEeccchHHHHHHHHHhcC---C----------------CCceecCCCC-CchHHHhhhhcCceeEeecccCcccce
Confidence 4678999999998777754211 1 1123333222 223333 6678998887664 57899
Q ss_pred ccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccHHHHHHHHHhcCCEEEEecccccccc
Q psy13453 666 LRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLEELGPICQEYNIWLHVDAAYAGSAL 728 (764)
Q Consensus 666 md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~eIa~i~~~~glwLHVDaA~Gg~~l 728 (764)
||++.+|+.+++++ +++++.-.++.+|.+ |-|++|+++|+++++.++-|-.|+-.++
T Consensus 187 IDL~~veal~DENT------~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vf 246 (447)
T KOG0259|consen 187 IDLDGVEALADENT------VAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVF 246 (447)
T ss_pred echHHHHHhhccCe------eEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeec
Confidence 99999999998874 477778888888876 7899999999999999999999887554
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0023 Score=74.09 Aligned_cols=231 Identities=11% Similarity=0.021 Sum_probs=137.3
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhC----CCC-cEEEEeeCCcccccccCchhhhc----
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKS----FLC-PMCSGYCGRTLHQDIQSLNAPVS---- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~----G~~-p~~VatAGTT~~G~iDpi~~ia~---- 90 (764)
.|||+.+++.+.|-.. +.+|.+ |.+.|++.+++..+. .++ .++|...-..++|.+=|++++.+
T Consensus 202 ~H~s~~~~~~ls~~~~---~~~~~n-----d~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~l~~k 273 (481)
T PLN02822 202 VHWGIQNGLYLSRSTI---VYFKHN-----DMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVRLKEK 273 (481)
T ss_pred ccHHHHHHHHHcCCeE---EEECCC-----CHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHHHHHHHHH
Confidence 7899999999987544 777766 456677777654332 122 24455555666999999999886
Q ss_pred -CCCceeccccccc-cc-------eee-ee-cCCCcccccccc------c--------cc-----cCCcccCCCCcccHH
Q psy13453 91 -NGPLKVGGVLRRV-YS-------SCL-VP-RGQKSLRTTVLF------H--------FL-----FQHWQIPLGRRFRAL 140 (764)
Q Consensus 91 -~~wlHVDa~l~~~-y~-------s~l-l~-rd~~~l~~~~s~------~--------~d-----~~d~tle~SRr~~AL 140 (764)
++++-+|-.+... ++ ... +. .+.+....+|+- . .+ ...++...+-. ..
T Consensus 274 ~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg~~GG~i~g~~~ii~~~~~~~~~~~fsa~lP--p~ 351 (481)
T PLN02822 274 YRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASLP--PY 351 (481)
T ss_pred cCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhhhCCeEEEcCHHHHHHHHhcCCceeeccccC--HH
Confidence 8888888765311 11 000 00 011111111110 0 01 11122222222 22
Q ss_pred HHHH---HHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHH
Q psy13453 141 KLWM---TLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNK 217 (764)
Q Consensus 141 klWa---tL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~ 217 (764)
.+.+ +|+.+ +.+.++.++.-++.++|.+.|++.+++.+..++...++.+++... . . ..++..+.-.
T Consensus 352 ~~~Aa~~aL~~l--~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~spi~~l~l~~~-~-~-------~~~~~~~~~~ 420 (481)
T PLN02822 352 LASAAITAIDVL--EDNPSVLAKLKENIALLHKGLSDIPGLSIGSNTLSPIVFLHLEKS-T-G-------SAKEDLSLLE 420 (481)
T ss_pred HHHHHHHHHHHH--HhCHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCEEEEEeCCC-c-c-------cccchHHHHH
Confidence 2233 44433 224678888889999999999998899987777777877776321 0 0 0001123346
Q ss_pred HHHHHHH-hcCcEEEEe--cee---CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHc
Q psy13453 218 AVYDRII-ARKVIYIVK--GSF---QDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLR 272 (764)
Q Consensus 218 ~L~~~L~-~~G~~~vs~--t~l---~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~ 272 (764)
++.++|. +.|.+.... ... +.+..+|+|++.-| ++++|+.+++.|+++...++.
T Consensus 421 ~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~-t~edI~~~~~~l~~~~~~~~~ 480 (481)
T PLN02822 421 HIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGH-TESDILKASESLKRVAASVLK 480 (481)
T ss_pred HHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCC-CHHHHHHHHHHHHHHHHHHhc
Confidence 7888987 678755532 222 12457999866655 799999999999999888764
|
|
| >KOG0256|consensus | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00072 Score=74.38 Aligned_cols=173 Identities=16% Similarity=0.130 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
..+-+++.+.|.+.-|-+..| .+...++|.|+|.+|-+.+-+--+ | ....++..--
T Consensus 124 ~~frqa~A~Fm~~~r~~~v~f-----dP~~~Vv~~G~T~ane~l~fcLad----------p---------gdafLvPtPy 179 (471)
T KOG0256|consen 124 PSFRQAVAEFMERARGNRVKF-----DPERVVVTNGATSANETLMFCLAD----------P---------GDAFLVPTPY 179 (471)
T ss_pred hHHHHHHHHHHHHHhCCCCcc-----CccceEEecccchhhHHHHHHhcC----------C---------CceeeecCCC
Confidence 344555666666666655544 224578999999987554432211 1 1112222222
Q ss_pred chhHHHHHHh-CCCceEEEecC--CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc---cHHHHHHHHHhcC
Q psy13453 641 NSSVEKSAII-GDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD---NLEELGPICQEYN 714 (764)
Q Consensus 641 H~Sv~kAa~~-lGl~v~~Vp~d--~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD---pl~eIa~i~~~~g 714 (764)
-..+.+-+++ .|++++.|.++ ..+++++++||+++++.++.|.+.--|++|-.++..|.+- .+..+.++|.++|
T Consensus 180 Y~gfdrdl~~rTgveivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kn 259 (471)
T KOG0256|consen 180 YPGFDRDLRWRTGVEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKN 259 (471)
T ss_pred CCcccccceeccCceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcc
Confidence 2223333333 57788888886 4569999999999999999999999999999999999985 4555667788999
Q ss_pred CEEEEeccccccccccchhhhhhcCCC----ccc--EEEEcCCccCCCC
Q psy13453 715 IWLHVDAAYAGSALLLPEYAHLKRGLE----YVD--SFDFNTHKWLLVN 757 (764)
Q Consensus 715 lwLHVDaA~Gg~~l~~~~~r~~l~gie----~aD--Sit~d~HK~l~~P 757 (764)
+.+.+|--|++...-.++++..+.-.+ .-| -|.++..|=+|.|
T Consensus 260 iHvI~DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~Glp 308 (471)
T KOG0256|consen 260 IHVISDEIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLP 308 (471)
T ss_pred eEEEeehhhcccccCccCceEHHHHhhccccCCCcEEEEEEeccccCCC
Confidence 999999999998776555543322111 122 4678899988887
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.002 Score=71.77 Aligned_cols=220 Identities=9% Similarity=-0.015 Sum_probs=125.2
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEee-CCcccccccCchhhhc-----CCC
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYC-GRTLHQDIQSLNAPVS-----NGP 93 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatA-GTT~~G~iDpi~~ia~-----~~w 93 (764)
.|+|...+++++|... +.++. +|+++|++.|++....+..+.+|.+- -..++|.+++++++.+ ++|
T Consensus 135 ~~~~~~~~~~~~~~~~---~~~~~-----~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~~~~~~ 206 (397)
T PRK06939 135 NHASIIDGVRLCKAKR---YRYAN-----NDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLADKYDAL 206 (397)
T ss_pred hhHHHHHHHHhcCCce---EEeCC-----CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHHHHHHhCCE
Confidence 6788888999988765 66654 58999999998654333334554332 3456899999999876 889
Q ss_pred ceecccccc---cc-ce-ee----eecCCCcc----ccccc---ccc-----c--------cCCcccCCCCcc-cHHHHH
Q psy13453 94 LKVGGVLRR---VY-SS-CL----VPRGQKSL----RTTVL---FHF-----L--------FQHWQIPLGRRF-RALKLW 143 (764)
Q Consensus 94 lHVDa~l~~---~y-~s-~l----l~rd~~~l----~~~~s---~~~-----d--------~~d~tle~SRr~-~ALklW 143 (764)
+++|..... .. +. .. +..+.... ...+. ..+ + ...+...++... .+..+.
T Consensus 207 li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g~r~G~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~ 286 (397)
T PRK06939 207 VMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGASGGYTAGRKEVIDWLRQRSRPYLFSNSLAPAIVAASI 286 (397)
T ss_pred EEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCccCceEEEeCHHHHHHHHHhCccccccCCCCHHHHHHHH
Confidence 999997521 11 00 00 00000000 00110 000 0 011122222211 122334
Q ss_pred HHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHH
Q psy13453 144 MTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRI 223 (764)
Q Consensus 144 atL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L 223 (764)
++++.+- + ..++.++..++.+++.+.|++. ++++. .|....+.+... . ..-..++.++|
T Consensus 287 ~al~~~~-~-~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~-~----------------~~~~~~~~~~L 345 (397)
T PRK06939 287 KVLELLE-E-SDELRDRLWENARYFREGMTAA-GFTLG-PGEHPIIPVMLG-D----------------AKLAQEFADRL 345 (397)
T ss_pred HHHHHHh-c-CHHHHHHHHHHHHHHHHHHHHc-CCCcC-CCCCCEEEEEEC-C----------------HHHHHHHHHHH
Confidence 4455442 1 2456677778888999999876 56653 344444443321 0 01135788889
Q ss_pred HhcCcEEEEece---eCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 224 IARKVIYIVKGS---FQDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 224 ~~~G~~~vs~t~---l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
.++|........ -.+...+|+++...+ ++++++++++.|+++.++
T Consensus 346 ~~~gI~v~~~~~~~~~~~~~~iRi~~~~~~-~~~~i~~~l~~L~~~~~~ 393 (397)
T PRK06939 346 LEEGVYVIGFSFPVVPKGQARIRTQMSAAH-TKEQLDRAIDAFEKVGKE 393 (397)
T ss_pred HHCCceEeeeCCCCCCCCCceEEEEECCCC-CHHHHHHHHHHHHHHHHH
Confidence 888876543211 123468998765544 588999999999887654
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0018 Score=71.89 Aligned_cols=159 Identities=13% Similarity=-0.002 Sum_probs=101.7
Q ss_pred HHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHH
Q psy13453 566 LVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVE 645 (764)
Q Consensus 566 ~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~ 645 (764)
.+.+.+++.++.+++ ..++|+|+++++...+.+. .+ ++ .|++.+=+.....
T Consensus 61 ~Lr~aia~~~~v~~~---------~I~it~G~~~~i~~~~~~l----~~---------------g~-~vlv~~P~y~~~~ 111 (360)
T PRK07392 61 ELRLALAQHHQLPPE---------WILPGNGAAELLTWAGREL----AQ---------------LR-AVYLITPAFGDYR 111 (360)
T ss_pred HHHHHHHHHhCcChh---------hEEECCCHHHHHHHHHHHh----CC---------------CC-eEEEECCCcHHHH
Confidence 445555666677653 6789999998876554321 11 12 3556666777788
Q ss_pred HHHHhCCCceEEEecCCCCc-----ccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEe
Q psy13453 646 KSAIIGDVPVRQLRSDDNGV-----LRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVD 720 (764)
Q Consensus 646 kAa~~lGl~v~~Vp~d~~g~-----md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVD 720 (764)
..+...|++++.||.+.++. .+++++++.. ..+.+++.+..++.||.+=+.++|.++|+++++ +.+|
T Consensus 112 ~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~nP~NPTG~~~~~~~l~~l~~~~~~-~IiD 183 (360)
T PRK07392 112 RALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQL-------TPNDGLLLNNPHNPTGKLWSREAILPLLEQFAL-VVVD 183 (360)
T ss_pred HHHHHcCCeEEEEecccccCCcccccCHHHHHHhc-------cCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCE-EEEE
Confidence 88999999999999975443 3455544322 124577778899999999999999999999985 6679
Q ss_pred cccccccccc--chhhhhhcCCCcccEEEEcCCccCCCC-cCcee
Q psy13453 721 AAYAGSALLL--PEYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSA 762 (764)
Q Consensus 721 aA~Gg~~l~~--~~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~ 762 (764)
-+|..+..-. +.....+..-+++ -+.-++-|.++.| +-+|.
T Consensus 184 E~y~~~~~~~~~~s~~~~~~~~~~v-i~i~S~SK~~~l~GlRiG~ 227 (360)
T PRK07392 184 EAFMDFLPPDAEQSLIPCLAEYPNL-IILRSLTKFYSLPGLRLGY 227 (360)
T ss_pred CchhhhccCccccchHHHhhcCCCE-EEEEechhhhcCCchheee
Confidence 9998654211 0111112211111 3445889988844 33443
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0015 Score=74.28 Aligned_cols=162 Identities=16% Similarity=0.046 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcch
Q psy13453 563 LEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNS 642 (764)
Q Consensus 563 lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~ 642 (764)
...++.+.+++.+...+ ..+||.|||+||..|+++||... .+ +-+|.....-|-
T Consensus 89 ~~~~lae~l~~~~~~~~----------~v~~~~sGseA~e~Alk~ar~~~-gr---------------~~ii~~~~~yhG 142 (423)
T TIGR00713 89 AEILLAKEIISRVPSVE----------MVRFVNSGTEATMSAVRLARGYT-GR---------------DKIIKFEGCYHG 142 (423)
T ss_pred HHHHHHHHHHHhCCccc----------EEEEeCCHHHHHHHHHHHHHHhh-CC---------------CEEEEEcCCCCC
Confidence 44556667777664322 46899999999999999998752 11 123444444454
Q ss_pred hHHHHHHhC--C-----------C------ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc-
Q psy13453 643 SVEKSAIIG--D-----------V------PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN- 702 (764)
Q Consensus 643 Sv~kAa~~l--G-----------l------~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp- 702 (764)
...-+.... | + .+..+|- -|+++|++.|++. +..+.+|+...-..++|.+-+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~i~~~---~~~~aavi~ep~~~~~G~~~~~ 214 (423)
T TIGR00713 143 HHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPY-----NDLEALEEVFEEY---GEEIAGVIVEPVAGNMGVVPPK 214 (423)
T ss_pred ChhhhhccccCcccccCCCCCCCCCcccccceEEeCC-----CCHHHHHHHHHHc---CCcEEEEEEeCCCCCCCCcCCC
Confidence 322222110 0 0 1122221 1799999998742 123334444322222677755
Q ss_pred ---HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCcee
Q psy13453 703 ---LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSA 762 (764)
Q Consensus 703 ---l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~ 762 (764)
+++|.++|++||++|++|-+|.+. ..-........++ ..|-+ .+-|.++.-+..|+
T Consensus 215 ~~~l~~l~~l~~~~~~llI~DEv~~g~-r~g~~~~~~~~~~-~pDi~--t~sK~l~~G~pig~ 273 (423)
T TIGR00713 215 PEFLAGLRALTEEYGSLLIFDEVMTGF-RVALGGAQEYFGV-EPDLT--TLGKIIGGGLPVGA 273 (423)
T ss_pred HHHHHHHHHHHHHhCCEEEEEcccccc-ccCcchhHHHhCC-Ccchh--hhhhhhcCCCceee
Confidence 899999999999999999999775 3211111112244 24533 46787763233343
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0031 Score=72.26 Aligned_cols=175 Identities=14% Similarity=0.009 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
+..+.++.+.|++++.-+. -....|+.+|||||..|+++||... .+ +.++.....-
T Consensus 96 ~~~~~~lAe~L~~~~p~~~--------~~~v~f~~SGsEA~e~AlklAr~~t-gr---------------~~Ii~~~~~y 151 (441)
T PRK05769 96 YEPAVELAERLVEIAPGGF--------EKKVFFTNSGTESNEAAIKIARYHT-GR---------------KYIIAFLGAF 151 (441)
T ss_pred CHHHHHHHHHHHHhCCCCC--------CCEEEECCchHHHHHHHHHHHHHHh-CC---------------CeEEEECCCc
Confidence 4556677888888764211 0246899999999999999999652 11 1234444445
Q ss_pred chhHHHHHHhCC-------------CceEEEecCCCCc-------------ccHHHHHHHHHHhhhcCCCceEEEEeecc
Q psy13453 641 NSSVEKSAIIGD-------------VPVRQLRSDDNGV-------------LRGDALLTAVKEDLAKGLIPCCLIATLGT 694 (764)
Q Consensus 641 H~Sv~kAa~~lG-------------l~v~~Vp~d~~g~-------------md~~~Le~~I~~~~~~G~~p~~VvataGT 694 (764)
|=...-+..+.| -++..+|.....+ -+.+.+++.+.+....+..+.+|+.---.
T Consensus 152 HG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~ 231 (441)
T PRK05769 152 HGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQ 231 (441)
T ss_pred CCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECccc
Confidence 533333333221 1344555422111 12334555332211112345555554444
Q ss_pred CCcccccc----HHHHHHHHHhcCCEEEEeccccccccccchh-hhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 695 TGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEY-AHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 695 T~~GaiDp----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~-r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
...|.+-| +++|.++|++||+.+++|-++.|.-. ..++ ....-|+ ..|-+++. |.++.-+..|++
T Consensus 232 g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr-~G~~~a~~~~gv-~pDivt~~--K~l~~G~p~gav 301 (441)
T PRK05769 232 GEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGR-TGKMFAIEHFGV-EPDIITLA--KAIAGGLPLGAV 301 (441)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCc-ccceehhhccCC-CCCEEEEc--ccccCCcccEEE
Confidence 45677777 99999999999999999999987322 2111 1111255 45877764 776644445543
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00098 Score=74.56 Aligned_cols=225 Identities=10% Similarity=0.052 Sum_probs=127.8
Q ss_pred eeeHHHHHhhcCCCCCCeEEecCCC--CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccc---cCchhhhc-----
Q psy13453 21 IYESFKATHSLSGTPDQVRLSGLPD--SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDI---QSLNAPVS----- 90 (764)
Q Consensus 21 ~YSv~KAa~~LGl~~~~v~~Vpvd~--~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~i---Dpi~~ia~----- 90 (764)
+..+..+++.+|... +.||++. .+.+|+++|++++++. +-+++-+.++.++|.+ ++++++.+
T Consensus 125 y~~~~~~~~~~g~~~---~~~~~~~~~~~~~d~~~l~~~l~~~-----~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~ 196 (393)
T PRK05764 125 WVSYPEMVKLAGGVP---VFVPTGEENGFKLTVEQLEAAITPK-----TKALILNSPSNPTGAVYSPEELEAIADVAVEH 196 (393)
T ss_pred CcchHHHHHHcCCEE---EEEecCcccCCcCCHHHHHHhhCcc-----ceEEEEECCCCCCCcccCHHHHHHHHHHHHHC
Confidence 456777889999877 8999973 5689999999998642 2355556678889997 55666654
Q ss_pred CCCceeccccccc-c-----cee-----------e-eecCCCccc-ccccccc-----c----cCCcccCCCCcccHHHH
Q psy13453 91 NGPLKVGGVLRRV-Y-----SSC-----------L-VPRGQKSLR-TTVLFHF-----L----FQHWQIPLGRRFRALKL 142 (764)
Q Consensus 91 ~~wlHVDa~l~~~-y-----~s~-----------l-l~rd~~~l~-~~~s~~~-----d----~~d~tle~SRr~~ALkl 142 (764)
++|+.+|.+.... + .+. + +..-.+.+- ..+.+.+ + +..+.-..+-....+..
T Consensus 197 ~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q 276 (393)
T PRK05764 197 DIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRLGYAAGPKELIKAMSKLQSHSTSNPTSIAQ 276 (393)
T ss_pred CcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCccceeEEEecCHHHHHHHHHHHhhcccCCChHHH
Confidence 8899999753211 0 000 0 000000000 0000000 0 00000011112344555
Q ss_pred HHHHHHcc--HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEE-EeeccccccccccccCccCCccHHHHHH
Q psy13453 143 WMTLRSYG--LKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCF-RLKVRFWDKLDNLFGTISFGDNDLNKAV 219 (764)
Q Consensus 143 WatL~~lG--~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~F-ry~P~~~~~~~~~~~~~~~~~d~~n~~L 219 (764)
|++.+.+- .+-+.++.++.-+..+++.+.|++++++.+.. |+-+...| ++.+ ... .... -..++
T Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~g~~~~~~~~~~-~~~---------~~~~--~~~~~ 343 (393)
T PRK05764 277 YAAVAALNGPQDEVEEMRQAFEERRDLMVDGLNEIPGLECPK-PEGAFYVFPNVSK-LLG---------KSIT--DSLEF 343 (393)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhhCCCCcccC-CCcceEEEEeccc-ccc---------cccC--CHHHH
Confidence 66666662 44445555666677888999999988888654 55443333 3321 100 0000 12467
Q ss_pred HHHHHh-cCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 220 YDRIIA-RKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 220 ~~~L~~-~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
.+.+.+ .|..+..........++|++++. ++++++..++.|.++.++
T Consensus 344 ~~~l~~~~gi~v~~g~~f~~~~~vRis~~~---~~~~~~~~i~~l~~~~~~ 391 (393)
T PRK05764 344 AEALLEEAGVAVVPGIAFGAPGYVRLSYAT---SLEDLEEGLERIERFLES 391 (393)
T ss_pred HHHHHHhCCEEEccccccCCCCEEEEEecC---CHHHHHHHHHHHHHHHHh
Confidence 777654 57765544333335789999875 488999999998877643
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0021 Score=71.67 Aligned_cols=239 Identities=13% Similarity=0.087 Sum_probs=152.3
Q ss_pred cccc---ccccccCCcceeeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCccccc
Q psy13453 5 SLIP---KLAYPSETLSLLIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQD 81 (764)
Q Consensus 5 ~~~~---~~~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~ 81 (764)
|+++ +.|-.+.+- +-+=+..-|..+|... +.+.+.-.-.+|+++++++|+++.. .-.+..+-.-|.||+
T Consensus 75 sl~~pgdkVLv~~nG~--FG~R~~~ia~~~g~~v---~~~~~~wg~~v~p~~v~~~L~~~~~---~~~V~~vH~ETSTGv 146 (383)
T COG0075 75 SLVEPGDKVLVVVNGK--FGERFAEIAERYGAEV---VVLEVEWGEAVDPEEVEEALDKDPD---IKAVAVVHNETSTGV 146 (383)
T ss_pred hccCCCCeEEEEeCCh--HHHHHHHHHHHhCCce---EEEeCCCCCCCCHHHHHHHHhcCCC---ccEEEEEeccCcccc
Confidence 4554 336666664 5566788899999888 8888886668999999999996522 113347889999999
Q ss_pred ccCchhhhc------------------CCCceecccc-------ccc-----cc-eeeeecCCCcc--c---c-cccccc
Q psy13453 82 IQSLNAPVS------------------NGPLKVGGVL-------RRV-----YS-SCLVPRGQKSL--R---T-TVLFHF 124 (764)
Q Consensus 82 iDpi~~ia~------------------~~wlHVDa~l-------~~~-----y~-s~ll~rd~~~l--~---~-~~s~~~ 124 (764)
..|+++|++ +.++++|.|. .|+ -| +.+.++++..- . . .|+.+.
T Consensus 147 lnpl~~I~~~~k~~g~l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylDL 226 (383)
T COG0075 147 LNPLKEIAKAAKEHGALLIVDAVSSLGGEPLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDL 226 (383)
T ss_pred cCcHHHHHHHHHHcCCEEEEEecccCCCcccchhhcCccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCceeecH
Confidence 999999886 3344444442 111 11 34444432110 0 0 111111
Q ss_pred ----ccCCcc--cCCCCcccH-HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC--c-eeEEEEee
Q psy13453 125 ----LFQHWQ--IPLGRRFRA-LKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS--M-GLVCFRLK 194 (764)
Q Consensus 125 ----d~~d~t--le~SRr~~A-LklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~--l-~iV~Fry~ 194 (764)
.|.+.. ...+=.-.. ..+-.+|+.+=.||+..+++++-.+++++++.+++. ||+++.++. + ++.+|+ .
T Consensus 227 ~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~al-Gl~~~~~~~~~s~tvta~~-~ 304 (383)
T COG0075 227 KKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEAL-GLELFADPERRSPTVTAIK-V 304 (383)
T ss_pred HHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCccccCcccCCCceEEEE-C
Confidence 122111 111112222 377888999999999999999999999999999986 999998542 3 455564 3
Q ss_pred ccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEec--eeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy13453 195 VRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKG--SFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVL 271 (764)
Q Consensus 195 P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t--~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~ 271 (764)
|.+ .+ ..++...+.++.-..++.. .+. ...+||-.+- ..+..++...+..++.+..++-
T Consensus 305 P~g--------------~~--~~~~~~~~~~~~g~~i~gg~~~l~-gkifRIGhMG-~~~~~dv~~~l~ale~~L~~~g 365 (383)
T COG0075 305 PEG--------------VD--DKKVRRALLKEYGVEIAGGQGPLK-GKIFRIGHMG-NVRPEDVLAALAALEAALRELG 365 (383)
T ss_pred CCC--------------CC--cHHHHHHHHHhCCEEecccccccC-ccEEEEecCc-cCCHHHHHHHHHHHHHHHHHcC
Confidence 432 22 1233445666543333332 222 3689997777 8899999999999988876653
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0027 Score=72.08 Aligned_cols=178 Identities=14% Similarity=0.071 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEE-eCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCC
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGII-QSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQ 639 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~Gvf-TsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~ 639 (764)
+....++.+.|++++..|... .....| +++|||||-.|++.||... .+ +-+|.....
T Consensus 77 ~~~~~~lae~l~~~~~~~~~~------~~~~~f~~~sGseA~e~AlklAr~~t-gr---------------~~ii~~~~~ 134 (412)
T TIGR02407 77 TEAKREFLETFNEIILKPRGL------DYKVQFPGPTGTNAVESALKLARKVT-GR---------------SNVVSFTNA 134 (412)
T ss_pred cHHHHHHHHHHHHhccCccCC------CceEEEeCCCchHHHHHHHHHHhhhc-CC---------------CeEEEECCC
Confidence 455666777888775323210 012346 4899999999999999751 11 123444555
Q ss_pred cchhHHHHHHhCC------------CceEEEecCCCC---cccHHHHHHHHHHhhhcCCCceEEEEeeccCCccc----c
Q psy13453 640 SNSSVEKSAIIGD------------VPVRQLRSDDNG---VLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCA----F 700 (764)
Q Consensus 640 aH~Sv~kAa~~lG------------l~v~~Vp~d~~g---~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Ga----i 700 (764)
-|=...-+..+.| ..+..+|..... .=+++.+++.+++.......+.+|+.---....|. -
T Consensus 135 yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~ 214 (412)
T TIGR02407 135 FHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASD 214 (412)
T ss_pred cCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCH
Confidence 5544333333221 134555543211 12467788888643211123445543322233344 4
Q ss_pred ccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCC-CcCceee
Q psy13453 701 DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLV-NFDCSAM 763 (764)
Q Consensus 701 Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~-P~~~g~l 763 (764)
+-+++|+++|++||++|++|..+.|+-....-+.....++ ..|-++++ |+++. -+.+|++
T Consensus 215 ~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v-~PDi~~~~--K~lg~~G~pigav 275 (412)
T TIGR02407 215 EWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGI-EPDIVCLS--KSISGYGLPLALT 275 (412)
T ss_pred HHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCC-CCCEEEec--hhccCCccceeEE
Confidence 6799999999999999999999986522111112222355 46877665 99864 3445554
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00098 Score=75.33 Aligned_cols=207 Identities=13% Similarity=0.051 Sum_probs=118.3
Q ss_pred eEEecCC-CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCceecccccc--cc-----
Q psy13453 38 VRLSGLP-DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKVGGVLRR--VY----- 104 (764)
Q Consensus 38 v~~Vpvd-~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHVDa~l~~--~y----- 104 (764)
++.+|++ +++.+|+++|+++|++. ++-+++.+ .+.+|..-|+++|++ ++++++|++... .+
T Consensus 140 ~~~~~~~~~~~~~d~~~l~~~i~~~----~~k~v~~~--~~~~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~ 213 (416)
T PRK00011 140 VVSYGVDEETGLIDYDEVEKLALEH----KPKLIIAG--ASAYSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHP 213 (416)
T ss_pred EeecCcCcccCCcCHHHHHHHHHhc----CCCEEEEC--CCcCCCccCHHHHHHHHHHcCCEEEEECcchhcccccCccC
Confidence 3778887 46899999999999753 11133222 245677667888765 889999996311 00
Q ss_pred -----ceeeeecCCCcccc---cccccc--c-------cCCcccCCCCcc-cHHHHHHHHHHccHHHHHHHHHHHHHHHH
Q psy13453 105 -----SSCLVPRGQKSLRT---TVLFHF--L-------FQHWQIPLGRRF-RALKLWMTLRSYGLKGLQAYLRKHISLAK 166 (764)
Q Consensus 105 -----~s~ll~rd~~~l~~---~~s~~~--d-------~~d~tle~SRr~-~ALklWatL~~lG~eGy~~~i~~~i~lA~ 166 (764)
+-+++..-.+.+.+ .+-... + .......++... ....++.++.....+++.+++++..++++
T Consensus 214 ~~~~~~di~~~S~~K~l~g~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~ 293 (416)
T PRK00011 214 SPVPHADVVTTTTHKTLRGPRGGLILTNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAK 293 (416)
T ss_pred CCCCCCcEEEecCCcCCCCCCceEEEeCCHHHHHHHHHHhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 01122211122211 000000 0 111111122211 22244566666667788999999999999
Q ss_pred HHHHHHhcCCCeEEeC-CCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEe-cee-----CCe
Q psy13453 167 KFADLVEQDDRFELVC-PPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVK-GSF-----QDR 239 (764)
Q Consensus 167 ~l~~~I~~~p~~ell~-~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~-t~l-----~g~ 239 (764)
++.+.|++. +|++.. .++.+++.+...+. ..+ ...+.+.|.+.|...-.. ..+ ..+
T Consensus 294 ~l~~~L~~~-g~~~~~~~~~~~~~~i~~~~~--------------~~~--~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~ 356 (416)
T PRK00011 294 ALAEALAER-GFRVVSGGTDNHLVLVDLRSK--------------GLT--GKEAEAALEEANITVNKNAVPFDPRSPFVT 356 (416)
T ss_pred HHHHHHHhC-CCeeeecCCCCeEEEEeCccc--------------CCC--HHHHHHHHHHcCcEEccCcCCCCCCCCCCC
Confidence 999999985 788763 23446666654321 111 145788888888753211 011 123
Q ss_pred eEEEEeccC---CCCCHHHHHHHHHHHHHHH
Q psy13453 240 LFMRFAICS---SQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 240 ~~LRi~v~n---p~Tt~e~i~~~l~~l~~~~ 267 (764)
..+|+.... ...+.++++.+++.|+++.
T Consensus 357 ~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~~ 387 (416)
T PRK00011 357 SGIRIGTPAITTRGFKEAEMKEIAELIADVL 387 (416)
T ss_pred CceEecCHHHhhcCcCHHHHHHHHHHHHHHH
Confidence 468984321 2346899999999998764
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0007 Score=75.46 Aligned_cols=215 Identities=12% Similarity=0.055 Sum_probs=134.5
Q ss_pred eHHHHHhhcCCCCCCeEEecCCC-CCcccHHHHHH-HHHHHhhCCCCcEEEEeeCCccccccc-CchhhhcCCCceeccc
Q psy13453 23 ESFKATHSLSGTPDQVRLSGLPD-SEWLAYLTLRT-IYESFRKSFLCPMCSGYCGRTLHQDIQ-SLNAPVSNGPLKVGGV 99 (764)
Q Consensus 23 Sv~KAa~~LGl~~~~v~~Vpvd~-~~rmD~~aLe~-~I~~~~~~G~~p~~VatAGTT~~G~iD-pi~~ia~~~wlHVDa~ 99 (764)
-+.+-|+.+|. . ..++++. .+..+..++++ +|+++ .-++.-|--.|.+|+.- ||.++ .+..+-|||.
T Consensus 105 r~~~~a~~~g~-~---~~~~~~~~~g~~~~~~~~~~~l~~~-----~~~V~~th~eTstGv~~~~i~~i-~g~l~vVDav 174 (360)
T PRK05355 105 KAIKEAKKYGE-V---NVAASSEDDGFTYIPPLDEWQLSDD-----AAYVHYTSNETIDGTEFHELPDT-GDVPLVADMS 174 (360)
T ss_pred HHHHHHHHhCC-c---eEEecccccCCCCCCChhhccCCCC-----CCEEEEccCCCcceEecCccccc-CCCcEEEEcC
Confidence 34667777783 2 5566654 67777777766 66542 22445788999999995 89998 5667788883
Q ss_pred c------------------cc----ccc-eeeeecCCCc--cccccccccccC----CcccCCCC-cccHHHHHHHHHHc
Q psy13453 100 L------------------RR----VYS-SCLVPRGQKS--LRTTVLFHFLFQ----HWQIPLGR-RFRALKLWMTLRSY 149 (764)
Q Consensus 100 l------------------~~----~y~-s~ll~rd~~~--l~~~~s~~~d~~----d~tle~SR-r~~ALklWatL~~l 149 (764)
- .| +.+ +++..+++-. +...+....|+. .....++= -.....+-.+|.++
T Consensus 175 ss~g~~~idv~~~d~~~~ssqK~lgP~Glg~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i 254 (360)
T PRK05355 175 SDILSRPIDVSKFGLIYAGAQKNIGPAGLTIVIVREDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWL 254 (360)
T ss_pred ccccCccCCHHHccEEEEeccccccCCceEEEEECHHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHH
Confidence 1 11 122 3444443211 111000001111 01111333 22334778889998
Q ss_pred cHH-HHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC--c-eeEEEEeeccccccccccccCccCCccHHHHHHHHHHHh
Q psy13453 150 GLK-GLQAYLRKHISLAKKFADLVEQDDRFELVCPPS--M-GLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIA 225 (764)
Q Consensus 150 G~e-Gy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~--l-~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~ 225 (764)
=.+ |+.++.++..++++++.+.+++.+-+..+.++. . .+++|++.. . ....++.+.+.+
T Consensus 255 ~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v~sf~~~~----------------~-~~~~~~~~~~~~ 317 (360)
T PRK05355 255 KEQGGVAAMEKRNQEKAALLYDAIDSSDFYRNPVAPEDRSRMNVPFTLAD----------------E-ELDKKFLAEAKA 317 (360)
T ss_pred HHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCChhhcCCcEEEEEcCC----------------h-HHHHHHHHHHHH
Confidence 888 899999999999999999999987444433322 3 579997631 1 223567788888
Q ss_pred cCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13453 226 RKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 226 ~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~ 267 (764)
+|..+ ....+....+|+++ .+.++.++|+.+++.|+++.
T Consensus 318 ~Gi~~--~~~~~~~g~vRiS~-~~~nt~eei~~l~~~l~~~~ 356 (360)
T PRK05355 318 AGLVG--LKGHRSVGGMRASI-YNAMPLEGVQALVDFMKEFE 356 (360)
T ss_pred CCCcc--cCCCCccCcEEEEC-CCCCCHHHHHHHHHHHHHHH
Confidence 99864 22222235799987 56667999999999999865
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00074 Score=76.35 Aligned_cols=160 Identities=14% Similarity=0.061 Sum_probs=92.7
Q ss_pred HHHHHHHHHhhcccC-----ccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHH
Q psy13453 537 SIVGDMLSGAFGLIG-----FSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRK 611 (764)
Q Consensus 537 ~~lad~l~~~lN~n~-----~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~ 611 (764)
..+.+.+...++... ..|........+-+.+.+|+.+..|++-+ ....++|+|+++++.+++.+....
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~-------~~~I~it~Ga~~al~~~~~~l~~~ 120 (416)
T PRK09440 48 DYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNIS-------PQNIALTNGSQSAFFYLFNLFAGR 120 (416)
T ss_pred HHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCC-------hhhEEEccChHHHHHHHHHHHhcc
Confidence 344455554444321 23433334556777788888887775432 235789999999876655432110
Q ss_pred HhhhhccCCCCCccccccCceEEEe-cCCcchhHHHHHHhCC----CceEEEecCC---CCcccHHHHHHHHHHhhhcCC
Q psy13453 612 MINHWQSKNPSLTENDIRNKLVAYT-SDQSNSSVEKSAIIGD----VPVRQLRSDD---NGVLRGDALLTAVKEDLAKGL 683 (764)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~vi~~-S~~aH~Sv~kAa~~lG----l~v~~Vp~d~---~g~md~~~Le~~I~~~~~~G~ 683 (764)
. ..+ +...|++ ..-+......++...| ...+.+++++ ++.+|+++|+ +.+
T Consensus 121 ~-----~~~---------~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~------ 178 (416)
T PRK09440 121 R-----ADG---------SLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--IDE------ 178 (416)
T ss_pred c-----cCC---------CCCeEEEecCCCchhhHHHhhccCceeecccccccccccccccCCCHHHcc--cCC------
Confidence 0 000 1112333 1222222333333322 2333444443 3579999987 211
Q ss_pred CceEEEEeeccCCccccc---cHHHHHHHHHhcCCEEEEeccccc
Q psy13453 684 IPCCLIATLGTTGTCAFD---NLEELGPICQEYNIWLHVDAAYAG 725 (764)
Q Consensus 684 ~p~~VvataGTT~~GaiD---pl~eIa~i~~~~glwLHVDaA~Gg 725 (764)
.+.+|+.+..++.||.+= .+++|+++|++|++|+.+|-+|+-
T Consensus 179 ~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~ 223 (416)
T PRK09440 179 DTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGP 223 (416)
T ss_pred CceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccc
Confidence 244777778889999985 477888899999999999999973
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0025 Score=73.43 Aligned_cols=166 Identities=14% Similarity=0.025 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
+....++.+.|++++..+. ....|+.+|||||-.|++.||.....+. +..+|.....-
T Consensus 123 ~~~~~~lae~L~~~~p~~~---------~~v~f~~SGsEAve~AlklAr~~t~~~g-------------r~~ii~~~~~y 180 (459)
T PRK11522 123 DPLRAMLAKTLAALTPGKL---------KYSFFCNSGTESVEAALKLAKAYQSPRG-------------KFTFIATSGAF 180 (459)
T ss_pred CHHHHHHHHHHHHhCCCCC---------CEEEEeCCchHHHHHHHHHHHHHhccCC-------------CcEEEEecCCC
Confidence 3445556667777653211 2468999999999999999997642110 01233344444
Q ss_pred chhHHHHHHhCCC------------ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc----HH
Q psy13453 641 NSSVEKSAIIGDV------------PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN----LE 704 (764)
Q Consensus 641 H~Sv~kAa~~lGl------------~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp----l~ 704 (764)
|=...-+....|- .+..+|.. |.++|++.+++..+.+..+.+|+.---....|.+-| ++
T Consensus 181 HG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~ 255 (459)
T PRK11522 181 HGKSLGALSATAKSTFRKPFMPLLPGFRHVPFG-----NIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLT 255 (459)
T ss_pred CCCcHHHhhhcCCcccccCCCCCCCCCcccCCC-----CHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHH
Confidence 4333323332221 22333332 578899988765434445556665555555677777 99
Q ss_pred HHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCC
Q psy13453 705 ELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLV 756 (764)
Q Consensus 705 eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~ 756 (764)
++.++|++||+.|++|=++.|+-..-.-+.....|+ ..|-+++ -|.++.
T Consensus 256 ~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv-~PDivt~--gK~lgg 304 (459)
T PRK11522 256 AVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENV-QPDILCL--AKALGG 304 (459)
T ss_pred HHHHHHHHcCCEEEeccceecCCccchhhhhhccCC-CCCEEEe--chhhhC
Confidence 999999999999999999876322111112222355 4676654 677764
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0021 Score=71.79 Aligned_cols=156 Identities=11% Similarity=0.001 Sum_probs=92.3
Q ss_pred HHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhH
Q psy13453 565 VLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV 644 (764)
Q Consensus 565 ~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv 644 (764)
.++.+.++++++++ ..+|+++||+||..|+++||... .+ +-+|..+..-|-+.
T Consensus 69 ~~la~~l~~~~~~~-----------~v~~~~SGseA~e~Alklar~~~-gr---------------~~Ii~~~~syHG~t 121 (364)
T PRK04013 69 EEMLEELSKWVNYE-----------YVYMGNSGTEAVEAALKFARLYT-GR---------------KEIIAMTNAFHGRT 121 (364)
T ss_pred HHHHHHHHhhcCCC-----------EEEEeCchHHHHHHHHHHHHHHh-CC---------------CEEEEECCccccCc
Confidence 33444556666653 36899999999999999998762 10 12455555556444
Q ss_pred HHHHHhCC-------C-----ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc-c---HHHHHH
Q psy13453 645 EKSAIIGD-------V-----PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD-N---LEELGP 708 (764)
Q Consensus 645 ~kAa~~lG-------l-----~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD-p---l~eIa~ 708 (764)
.-+....+ . .+..+|.+ |++++++.|.+. +.+|+.---....|.+- | +++|.+
T Consensus 122 ~~~ls~~~~~~~~~~~~p~~~~~~~~~~~-----d~~~l~~~i~~~------~aAvivEpi~g~gG~~~~~~~yl~~lr~ 190 (364)
T PRK04013 122 MGALSATWKPKYREDFEPLVPGFKHIPFN-----DVEAAKEAITKE------TAAVIFEPIQGEGGIVPAKEEFVKTLRD 190 (364)
T ss_pred hhhccCCCCcccccCCCCCCCCcEEecCC-----CHHHHHHHhcCC------cEEEEEcCCcCCCCCcCCCHHHHHHHHH
Confidence 33333211 1 23333332 578888887532 33554443333334432 3 999999
Q ss_pred HHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCcee
Q psy13453 709 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSA 762 (764)
Q Consensus 709 i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~ 762 (764)
+|++||+.|+.|-++.|. ..-.-+....-|+ ..|-+++ -|.++.-+..|+
T Consensus 191 lc~~~gillI~DEv~tG~-RtG~~~a~~~~gv-~PDiv~~--gK~lggG~P~~a 240 (364)
T PRK04013 191 LTEDVGALLIADEVQSGL-RTGKFLAIEHYKV-EPDIVTM--GKGIGNGVPVSL 240 (364)
T ss_pred HHHHcCCEEEEechhhcC-CCCchhHHHhcCC-CCCEEEe--cccccCCceeEE
Confidence 999999999999998875 3322222222355 4676766 566554344444
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0012 Score=73.51 Aligned_cols=211 Identities=12% Similarity=0.084 Sum_probs=117.4
Q ss_pred HHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEE-EeeCCcccccccCchhhhc-----CCCceec
Q psy13453 24 SFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCS-GYCGRTLHQDIQSLNAPVS-----NGPLKVG 97 (764)
Q Consensus 24 v~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~V-atAGTT~~G~iDpi~~ia~-----~~wlHVD 97 (764)
+.-++++.|..+ +.+++ ++.+|+++++++|.+.++ +++ .+.+..++|.+=|++++++ ++++++|
T Consensus 116 ~~~~~~~~g~~~---v~v~~--~~~~d~~~le~ai~~~t~-----ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD 185 (363)
T TIGR01437 116 VETMVRLGGGKV---VEAGY--ANECSAEQLEAAITEKTA-----AILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVD 185 (363)
T ss_pred hHHHHHhcCCeE---EEEcC--CCCCCHHHHHHhcChhce-----EEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEE
Confidence 455677788777 66665 467999999999987543 333 4455567888878888875 8999999
Q ss_pred cccccc------c-ceeeeecCCCcccccccccc-----ccCC---cc-cCCCCcccH-----HHHHHHHHHccHHHHHH
Q psy13453 98 GVLRRV------Y-SSCLVPRGQKSLRTTVLFHF-----LFQH---WQ-IPLGRRFRA-----LKLWMTLRSYGLKGLQA 156 (764)
Q Consensus 98 a~l~~~------y-~s~ll~rd~~~l~~~~s~~~-----d~~d---~t-le~SRr~~A-----LklWatL~~lG~eGy~~ 156 (764)
++.... + +.++.+.-.+.+..- ...+ +.-+ .. -...|+.+. +.+.+++..+-..|. +
T Consensus 186 ~a~~~~~~~~~~~g~D~~~~S~~K~l~gp-~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~~~~~-~ 263 (363)
T TIGR01437 186 AAAEEDLQKYYRLGADLVIYSGAKAIEGP-TSGLVLGKKKYIEWVKLQSKGIGRAMKVGKENILGLTAALEQYLSTGK-E 263 (363)
T ss_pred CCCCCchHHHHHcCCCEEEEeCCcccCCC-ceEEEEEcHHHHHHHHhccCCCcceeccCHHHHHHHHHHHHHHHccCc-c
Confidence 975311 1 122222222222110 0000 0000 00 011222222 455556655422121 2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEeCCCC-------ceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcE
Q psy13453 157 YLRKHISLAKKFADLVEQDDRFELVCPPS-------MGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVI 229 (764)
Q Consensus 157 ~i~~~i~lA~~l~~~I~~~p~~ell~~P~-------l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~ 229 (764)
.+++..+.++++.+.|++.|+++++.++. ...|.|.... .+.+ -.++.++|.+.|..
T Consensus 264 ~~~~~~~~~~~l~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~~~--------------~g~~--~~~l~~~L~~~~~~ 327 (363)
T TIGR01437 264 SGAEMVAKLTPFIEALNTLKGVSASIVQDEAGRDIARAEIRFDESE--------------LGMT--AADVVQALRQGEPA 327 (363)
T ss_pred cHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCCcCceEEEEEeccC--------------CCCC--HHHHHHHHhcCCCC
Confidence 33334455668999999999999885432 1223332110 0111 25788899887854
Q ss_pred EEEec--eeCCeeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 230 YIVKG--SFQDRLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 230 ~vs~t--~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
++.+. .-++. +|+... .+++++++.+++.|+++
T Consensus 328 I~~r~~~~~~~~--~~l~~~--~~~~~e~~~~~~~l~~~ 362 (363)
T TIGR01437 328 IYTRGYKANEGI--IEIDPR--SVTGGQLDIIVERIREI 362 (363)
T ss_pred EEEeeeeecCCe--EEEEee--cCCHHHHHHHHHHHHHh
Confidence 44443 33443 444333 25699999999998765
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00046 Score=73.89 Aligned_cols=157 Identities=17% Similarity=0.120 Sum_probs=112.2
Q ss_pred chHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEec
Q psy13453 558 PACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTS 637 (764)
Q Consensus 558 p~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S 637 (764)
+.-..+-..+.+.|+.++|..++ ..+. .++|..|+.-++.|--+..+ ++ .+++|
T Consensus 72 ~~W~~lp~~lgdklApLiGA~~~---------Evvv-~dtts~nl~k~L~aalr~~~---------------~r-~vIv~ 125 (407)
T COG3844 72 ADWFDLPERLGDKLAPLIGARAG---------EVVV-TDTTSINLFKVLAAALRPQE---------------GR-RVIVS 125 (407)
T ss_pred CchhhchhHHHHHhhhhhcCCCC---------ceEE-eCCcchHHHHHHHHHhccCC---------------Cc-eEEee
Confidence 33445777788999999998652 3444 44555666655544332111 12 34556
Q ss_pred CCcchhH-----HHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHh
Q psy13453 638 DQSNSSV-----EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQE 712 (764)
Q Consensus 638 ~~aH~Sv-----~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~ 712 (764)
+..-+-- +--+.++|+. -|-.+.+.|++++++++++.+ +|+.+.-+.-||-.-|+.+|.+++++
T Consensus 126 E~~~fpTdly~a~g~~~~~~~~-----~~~~~~~~P~~~~~~~~dd~A------vV~L~~V~y~TGql~dm~aiT~~AH~ 194 (407)
T COG3844 126 EGDNFPTDLYIAEGLADLLGIG-----YDLEGVIAPRALEEAITDDVA------VVLLSHVNYKTGQLLDMRAITALAHQ 194 (407)
T ss_pred cCCCCCcchhhhcchhhhhccc-----ccceeeeChHHHHHhhccceE------EEEeccccccccceeeHHHHHHHHHh
Confidence 5544332 2224444443 345677889999999999865 89999999999999999999999999
Q ss_pred cCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 713 YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 713 ~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
+|+...-|=|+.++++...-++. .||.-.++.||+|+.-
T Consensus 195 ~galv~wDLAHsaGavp~~Lh~~------gaDfaigcsyKYLNgG 233 (407)
T COG3844 195 HGALVGWDLAHSAGAVPVDLHAA------GADFAIGCSYKYLNGG 233 (407)
T ss_pred cCceEEeehhcccCCcceeeccc------CCCeeeeeeceeccCC
Confidence 99999999999999887754332 4699999999999763
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.004 Score=70.70 Aligned_cols=136 Identities=11% Similarity=0.072 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
....++.+.|+++....+ ...|+.+|||||-.|++.||...... +.. + .++.++.....-|
T Consensus 82 ~~~~~la~~L~~~~~~~~----------~v~f~~sGseA~e~AlklAr~~~~~~-g~~-~-------~r~~ii~~~~~yH 142 (408)
T PRK04612 82 APPLKLAEELVTASRFAE----------KVFLCNSGTEANEAAIKLVRKWASSQ-GRP-A-------DKRVIVTFRGSFH 142 (408)
T ss_pred HHHHHHHHHHHhhCCCCC----------EEEEcCchHHHHHHHHHHHHHHHHhh-CCC-C-------CCcEEEEECCCcC
Confidence 444566777777754321 46899999999999999999864221 100 0 0122344455556
Q ss_pred hhHHHHHHhCCC------------ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc----cHHH
Q psy13453 642 SSVEKSAIIGDV------------PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD----NLEE 705 (764)
Q Consensus 642 ~Sv~kAa~~lGl------------~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD----pl~e 705 (764)
=...-+....|- .++.+|.. |+++|++.+.. ..+.+|+..--....|.+. -+.+
T Consensus 143 G~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~~~~-----~~~aavi~eP~~~~gg~~~~~~~~l~~ 212 (408)
T PRK04612 143 GRTLAAVTATAQPKYQEGYEPLPGGFRYVDFN-----DVEALEAAMAG-----GDVAAVMLEPIQGEGGVMPAAPGFLAR 212 (408)
T ss_pred CccHHHHHhcCCcccccCCCCCCCCceEcCCC-----CHHHHHHhhCC-----CCEEEEEECCccCCCCCcCCCHHHHHH
Confidence 444334333321 12222221 68888888742 2344555443333334443 3999
Q ss_pred HHHHHHhcCCEEEEecccccc
Q psy13453 706 LGPICQEYNIWLHVDAAYAGS 726 (764)
Q Consensus 706 Ia~i~~~~glwLHVDaA~Gg~ 726 (764)
|+++|++||++|++|-+|.|.
T Consensus 213 l~~l~~~~g~llI~DEv~tg~ 233 (408)
T PRK04612 213 VRALCDQHDALLVLDEIQCGM 233 (408)
T ss_pred HHHHHHHcCCEEEEeccccCC
Confidence 999999999999999999873
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0037 Score=71.17 Aligned_cols=92 Identities=23% Similarity=0.213 Sum_probs=75.2
Q ss_pred EEEecCCcchhHHHHHHhCCCceEEEec-C-CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccHHHHH
Q psy13453 633 VAYTSDQSNSSVEKSAIIGDVPVRQLRS-D-DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLEELG 707 (764)
Q Consensus 633 vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~-d-~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~eIa 707 (764)
.|++.+-++......++..|.+++.+|. + +++.+|++.+++.+.+.. ....+++....++.||.+ +.+++|+
T Consensus 144 ~Vlv~~P~y~~y~~~~~~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~---~~~~~i~~~~P~NPTG~v~s~e~l~~i~ 220 (423)
T PLN02397 144 TIYIPNPTWGNHHNIFRDAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAP---DGSFVLLHACAHNPTGVDPTPEQWEQIS 220 (423)
T ss_pred EEEEeCCCchhHHHHHHHcCCeEEEeecccCcCCccCHHHHHHHHHhCC---CCCEEEEeCCCCCCCCCCCCHHHHHHHH
Confidence 5777777888888889999999999997 3 357899999998886431 235677778889999998 5677788
Q ss_pred HHHHhcCCEEEEeccccccc
Q psy13453 708 PICQEYNIWLHVDAAYAGSA 727 (764)
Q Consensus 708 ~i~~~~glwLHVDaA~Gg~~ 727 (764)
++|++||+|+++|-+|....
T Consensus 221 ~~a~~~~~~vI~De~Y~~l~ 240 (423)
T PLN02397 221 DLIKSKNHLPFFDSAYQGFA 240 (423)
T ss_pred HHHHhCCcEEEEecccCCcc
Confidence 99999999999999998764
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0026 Score=69.80 Aligned_cols=209 Identities=9% Similarity=0.072 Sum_probs=123.2
Q ss_pred eeH-HHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-------CCC
Q psy13453 22 YES-FKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-------NGP 93 (764)
Q Consensus 22 YSv-~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-------~~w 93 (764)
|+. .+++..+|... +.+|+++++.+|+++|++++.+. +-+++-+.++.++|.+=|++++.+ +++
T Consensus 105 y~~~~~~~~~~g~~~---~~~~~~~~~~~d~~~l~~~~~~~-----~~~v~l~~p~NptG~~~~~~~~~~l~~~~~~~~~ 176 (346)
T TIGR01141 105 YSMYEISAKIHGAEV---VKVPLDEDGQLDLEDILVAIDDK-----PKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDAL 176 (346)
T ss_pred HHHHHHHHHHcCCeE---EEeccCCCCCCCHHHHHHhcCCC-----CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcE
Confidence 444 45778888887 99999988999999999986432 224555677899999988877654 577
Q ss_pred ceeccccccc-c-----------ceeeeecC-CCccc-ccccccc-----c----cCCcccCCCCcccHHHHHHHHHHcc
Q psy13453 94 LKVGGVLRRV-Y-----------SSCLVPRG-QKSLR-TTVLFHF-----L----FQHWQIPLGRRFRALKLWMTLRSYG 150 (764)
Q Consensus 94 lHVDa~l~~~-y-----------~s~ll~rd-~~~l~-~~~s~~~-----d----~~d~tle~SRr~~ALklWatL~~lG 150 (764)
+.+|.+.... + ...++... .+.+. ..+...+ + +.... ..-....+...++...+-
T Consensus 177 ii~D~~y~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~ 254 (346)
T TIGR01141 177 VVVDEAYGEFSGEPSTLPLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANAEIIDALNKVR--APFNLSRLAQAAAIAALR 254 (346)
T ss_pred EEEECchhhhcCCccHHHHHhhCCCEEEEehhhHhhhchhhhceeeecCHHHHHHHHhcc--CCCCCCHHHHHHHHHHhC
Confidence 8888863210 0 00111111 11110 0000000 0 00000 000112233333333332
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcE
Q psy13453 151 LK-GLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVI 229 (764)
Q Consensus 151 ~e-Gy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~ 229 (764)
.. .+.++.++..+..+++.+.+++++++++. ++....+.|.+. . + ..++.++|.+.|..
T Consensus 255 ~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~g~~~~~~~~----------------~-~--~~~~~~~L~~~gI~ 314 (346)
T TIGR01141 255 DDDFIEKTVEEINAERERLYDGLKKLPGLEVY-PSDANFVLIRFP----------------R-D--ADALFEALLEKGII 314 (346)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEC-CCcCCEEEEecC----------------C-C--HHHHHHHHHHCCeE
Confidence 22 46777788888899999999998898854 445556666542 1 1 24688888899875
Q ss_pred EEEeceeCC-eeEEEEeccCCCCCHHHHHHHHHHHH
Q psy13453 230 YIVKGSFQD-RLFMRFAICSSQTEESDVQLGWNEIR 264 (764)
Q Consensus 230 ~vs~t~l~g-~~~LRi~v~np~Tt~e~i~~~l~~l~ 264 (764)
........+ ..++|+++. ++++++.+++.|+
T Consensus 315 v~~g~~f~~~~~~iRls~~----~~~~i~~~~~~l~ 346 (346)
T TIGR01141 315 VRDLNSYPGLPNCLRITVG----TREENDRFLAALR 346 (346)
T ss_pred EEeCCCcCCCCCeEEEecC----CHHHHHHHHHHhC
Confidence 544432211 568999854 6788998887763
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0053 Score=70.43 Aligned_cols=173 Identities=15% Similarity=-0.017 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
..+.++.+.|+++++.+. ....|+.+|||||-.|++.||... .+ +.++-....-|
T Consensus 84 ~~~~~la~~L~~~~p~~~---------~~v~f~~sGsEAve~AlklAr~~t-gr---------------~~ii~~~~~yH 138 (443)
T PRK08360 84 VEPLLLAEKLIEIAPGDN---------PKVSFGLSGSDANDGAIKFARAYT-KR---------------RKILSYLRSYY 138 (443)
T ss_pred HHHHHHHHHHHHhCCCCC---------CEEEEcCCHHHHHHHHHHHHHHhc-CC---------------CeEEEEeCCcC
Confidence 445566777888764321 246899999999999999998752 11 11233333344
Q ss_pred hhHHHHHHhCCC------------ceEEEecCCCCc------------ccHHHHHHHHHHhhhcCCCceEEEEeeccCCc
Q psy13453 642 SSVEKSAIIGDV------------PVRQLRSDDNGV------------LRGDALLTAVKEDLAKGLIPCCLIATLGTTGT 697 (764)
Q Consensus 642 ~Sv~kAa~~lGl------------~v~~Vp~d~~g~------------md~~~Le~~I~~~~~~G~~p~~VvataGTT~~ 697 (764)
=...-+..+.|. .+..+|.....+ -+.+.+++.|++.. .+..+.+|++.--...+
T Consensus 139 G~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~iAAvi~eP~~~~~ 217 (443)
T PRK08360 139 GSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEV-YAEGVAALFAEPIQGDA 217 (443)
T ss_pred CcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhcc-CCCCeEEEEECCccCCC
Confidence 332223332221 234444332111 12345566664421 12345666665544556
Q ss_pred ccccc----HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 698 CAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 698 GaiDp----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
|.+-+ +++|.++|++||++|.+|-+|.+.-....-+.....|+ ..|-+++ -|.++.-+..|++
T Consensus 218 G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~-~pDiitl--sK~l~~G~pigav 284 (443)
T PRK08360 218 GMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGV-EPDIITL--GKPLGGGLPISAT 284 (443)
T ss_pred CCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCC-CCCEEEe--cccccCCceeEEE
Confidence 76543 99999999999999999999987432221111111245 3576655 8888753444543
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0031 Score=69.21 Aligned_cols=153 Identities=14% Similarity=0.086 Sum_probs=101.9
Q ss_pred HHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccC
Q psy13453 540 GDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSK 619 (764)
Q Consensus 540 ad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~ 619 (764)
.+.+...++...+.|. -....+-..+.+|..+-.+|... +.+.+|++|. +.++..+.+.+...
T Consensus 44 ~~Al~~rvdhGvfGY~--~~~~~~~~ai~~w~~~r~~~~i~-------~e~i~~~p~V----Vpgi~~~I~~~T~~---- 106 (388)
T COG1168 44 IEALRERVDHGVFGYP--YGSDELYAAIAHWFKQRHQWEIK-------PEWIVFVPGV----VPGISLAIRALTKP---- 106 (388)
T ss_pred HHHHHHHHhcCCCCCC--CCCHHHHHHHHHHHHHhcCCCCC-------cceEEEcCcc----hHhHHHHHHHhCcC----
Confidence 3444444443333333 34455778899999999888653 2456777765 44555555443221
Q ss_pred CCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecC---CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCC
Q psy13453 620 NPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSD---DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTG 696 (764)
Q Consensus 620 ~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d---~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~ 696 (764)
++.|++ ..-.-+.+.++-...|-++...|.- ..+.||.++||+++.+.+ +-+.+.....+.
T Consensus 107 ----------gd~Vvi-~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~-----vkl~iLCnPHNP 170 (388)
T COG1168 107 ----------GDGVVI-QTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDER-----VKLFILCNPHNP 170 (388)
T ss_pred ----------CCeeEe-cCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCC-----ccEEEEeCCCCC
Confidence 122343 3344555777777778888877763 456789999999997753 236777788899
Q ss_pred cccc---ccHHHHHHHHHhcCCEEEEeccccc
Q psy13453 697 TCAF---DNLEELGPICQEYNIWLHVDAAYAG 725 (764)
Q Consensus 697 ~Gai---Dpl~eIa~i~~~~glwLHVDaA~Gg 725 (764)
+|.+ |.|.+|+++|++||+.++.|--|.=
T Consensus 171 ~Grvwt~eeL~~i~elc~kh~v~VISDEIHaD 202 (388)
T COG1168 171 TGRVWTKEELRKIAELCLRHGVRVISDEIHAD 202 (388)
T ss_pred CCccccHHHHHHHHHHHHHcCCEEEeeccccc
Confidence 9987 8999999999999999877776544
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.003 Score=72.07 Aligned_cols=164 Identities=15% Similarity=0.042 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
+..+.++.+.|.+++.. . ....|+.+|||||..|++.||... .+ +-+|.....-
T Consensus 92 ~~~~~~la~~l~~~~p~-~---------~~v~f~~sGseA~e~AlklAr~~t-gr---------------~~ii~~~~~y 145 (428)
T PRK12389 92 TELEIEFAKMLKEAIPS-L---------EKVRFVNSGTEAVMTTIRVARAYT-GR---------------TKIIKFAGCY 145 (428)
T ss_pred CHHHHHHHHHHHHhCCC-C---------cEEEEeCCHHHHHHHHHHHHHHhh-CC---------------CEEEEECCCc
Confidence 34556677777777631 1 246899999999999999999762 11 1234444445
Q ss_pred chhHHHHHHhCCC-------------------ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc
Q psy13453 641 NSSVEKSAIIGDV-------------------PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD 701 (764)
Q Consensus 641 H~Sv~kAa~~lGl-------------------~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD 701 (764)
|=...-+....|. ++..+|-+ |+++|++.+++.. ..+.+|+.---....|.+-
T Consensus 146 HG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~---~~vaavi~EPv~g~~G~~~ 217 (428)
T PRK12389 146 HGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFN-----DIEALKEALDKWG---DEVAAVLVEPIVGNFGIVE 217 (428)
T ss_pred CCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCC-----CHHHHHHHHHhcC---CcEEEEEEeCCCCCCCCcC
Confidence 5433333322221 12222221 6899999886432 2355665554455568787
Q ss_pred c----HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCcee
Q psy13453 702 N----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSA 762 (764)
Q Consensus 702 p----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~ 762 (764)
| +++|.++|++||+.|++|-.+.|+ ....-+....-|+ ..|-+++ -|.++.-+..|+
T Consensus 218 p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~~~a~~~~gv-~PDivt~--gK~lggG~Pi~a 278 (428)
T PRK12389 218 PKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYGGAQDLLGV-EPDLTAL--GKIIGGGLPIGA 278 (428)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCcchhhHHhCC-CCCeeee--chhhcCCCceeE
Confidence 7 999999999999999999999886 3221111112355 4676544 566654333443
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0032 Score=70.79 Aligned_cols=175 Identities=14% Similarity=0.031 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
..+.++.+.|+++.+.+ ...|+++|||||-.|+++||.....+....+. ..+..++-++.....-|
T Consensus 57 ~~~~~la~~l~~~~~~~-----------~v~f~~sGseA~e~AlklAr~~~~~~~~~~~~---~~~~~r~~ii~~~~~yH 122 (382)
T PLN00144 57 IPQVELAKRLVASSFAD-----------RVFFCNSGTEANEAAIKFARKYQRVRAPDKKD---PAASSATEFVSFSNSFH 122 (382)
T ss_pred HHHHHHHHHHHhcCCCC-----------eEEEeCCcHHHHHHHHHHHHHHHhccCCCCcc---ccccccceEEEECCCcc
Confidence 34455666677765432 36799999999999999999764221100000 00000123455565666
Q ss_pred hhHHHHHHhCCC------------ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc--cc--HHH
Q psy13453 642 SSVEKSAIIGDV------------PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF--DN--LEE 705 (764)
Q Consensus 642 ~Sv~kAa~~lGl------------~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai--Dp--l~e 705 (764)
=...-+..+.+- ++..+|-+ |+++|++.+.. ..+.+|+..--.+..|.+ ++ +++
T Consensus 123 G~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~~~~-----~~~aavi~eP~q~~gg~~~~~~~~~~~ 192 (382)
T PLN00144 123 GRTLGALALTSKEQYRTPFEPLMPGVTFVEYG-----NLEAARKLIQK-----GKTAAVFVEPVQGEGGIYPATKEFLQG 192 (382)
T ss_pred cccHHHHhcCCCccccccCCCCCCCeEEeCCC-----CHHHHHHhcCC-----CCeEEEEEccccCCCCCccCCHHHHHH
Confidence 544444443332 12333322 68889888742 134444444223332332 45 999
Q ss_pred HHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 706 LGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 706 Ia~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
|+++|++||++|++|-++.+......-+.....++ ..| .+.+-|.++.-+..|++
T Consensus 193 l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~-~PD--i~t~sK~l~~G~pig~v 247 (382)
T PLN00144 193 LRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGV-EPD--IMTLAKPLAGGLPIGAV 247 (382)
T ss_pred HHHHHHHcCCEEEEechhhCCCccchHhhhhhcCC-CCC--EEEecccccCCcceEEE
Confidence 99999999999999999987533221122223455 356 55557877644444443
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0023 Score=74.03 Aligned_cols=204 Identities=15% Similarity=0.042 Sum_probs=123.2
Q ss_pred cCC-CCCcccHHHHHHHHHHHhhCCCCc-EEEEeeCCcccccccCchhhhc-----CCCceecccc--------------
Q psy13453 42 GLP-DSEWLAYLTLRTIYESFRKSFLCP-MCSGYCGRTLHQDIQSLNAPVS-----NGPLKVGGVL-------------- 100 (764)
Q Consensus 42 pvd-~~~rmD~~aLe~~I~~~~~~G~~p-~~VatAGTT~~G~iDpi~~ia~-----~~wlHVDa~l-------------- 100 (764)
+++ +++.+|+++|++.+.+. .| ++|.+ .+.+|..-|+.++++ +.+++||+++
T Consensus 162 ~~~~~~g~iD~d~Le~~l~~~-----~pklIv~~--~S~~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~ 234 (475)
T PLN03226 162 RLDESTGLIDYDKLEKKAMLF-----RPKLIIAG--ASAYPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPF 234 (475)
T ss_pred eecCCCCCcCHHHHHHHHhhc-----CCeEEEEe--cCcCCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCC
Confidence 444 57899999999999753 23 34432 234566656666554 7899999942
Q ss_pred --------------ccccceeeeecCCCcccc---------cccccccc-CCcccCCCC-cccHHHHHHHHHHccHHHHH
Q psy13453 101 --------------RRVYSSCLVPRGQKSLRT---------TVLFHFLF-QHWQIPLGR-RFRALKLWMTLRSYGLKGLQ 155 (764)
Q Consensus 101 --------------~~~y~s~ll~rd~~~l~~---------~~s~~~d~-~d~tle~SR-r~~ALklWatL~~lG~eGy~ 155 (764)
.-+.++++++++. .... .+....++ ..+.++++= ...+..+.++++.+=..|+.
T Consensus 235 ~~~Div~~t~hK~L~GP~Gg~I~~~~~-~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~ 313 (475)
T PLN03226 235 EYCDVVTTTTHKSLRGPRGGMIFFRKG-PKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFK 313 (475)
T ss_pred CCCeEEEecCcccccCCCceEEEEchh-hcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCcCHH
Confidence 1122345665432 1100 00000111 112344442 23344667888888777888
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEeCC-CCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEec
Q psy13453 156 AYLRKHISLAKKFADLVEQDDRFELVCP-PSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKG 234 (764)
Q Consensus 156 ~~i~~~i~lA~~l~~~I~~~p~~ell~~-P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t 234 (764)
++.++..+++++|++.+++ .+|.++.. .+..++.+.+.|.+. + ..++.+.|.+.|.. ++.+
T Consensus 314 ~~~~~~~~na~~L~~~L~~-~G~~l~~~~t~~hi~lv~~~~~gi--------------~--~~~~~~~L~~~~I~-~nk~ 375 (475)
T PLN03226 314 AYQKQVKANAAALANRLMS-KGYKLVTGGTDNHLVLWDLRPLGL--------------T--GSRVEKVLDLAHIT-LNKN 375 (475)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCCEEEcCCCCCCEEEEEccCCCC--------------C--HHHHHHHHHHCCCE-ECCC
Confidence 8899999999999999998 69999874 234566665543221 1 13566667777763 2222
Q ss_pred eeC------CeeEEEE---eccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy13453 235 SFQ------DRLFMRF---AICSSQTEESDVQLGWNEIRTATEEVL 271 (764)
Q Consensus 235 ~l~------g~~~LRi---~v~np~Tt~e~i~~~l~~l~~~~~~i~ 271 (764)
.+- .+..+|+ .++.-..+++|++++.+.|.++.+...
T Consensus 376 ~~p~~~~~~~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~~~~~ 421 (475)
T PLN03226 376 AVPGDSSALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVTIAL 421 (475)
T ss_pred CCCCCcccCCCCCcccCcHHHHHCCCCHHHHHHHHHHHHHHHHHhh
Confidence 211 2356786 125566678999999999988876543
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0017 Score=72.82 Aligned_cols=214 Identities=13% Similarity=0.002 Sum_probs=116.2
Q ss_pred HhhcCCCCCCeEEecCCC---CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCceeccc
Q psy13453 28 THSLSGTPDQVRLSGLPD---SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKVGGV 99 (764)
Q Consensus 28 a~~LGl~~~~v~~Vpvd~---~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHVDa~ 99 (764)
+...|... +.++++. ++.+|+++++++|.+. ++-+++-+-+ .+|...|+++|++ ++++++|+.
T Consensus 127 ~~~~g~~~---~~~~~~~~~~~~~id~~~l~~~i~~~----~~~~v~~~~~--~~~~~~~~~~I~~l~~~~~~~li~D~a 197 (402)
T cd00378 127 VSASGKLF---ESVPYGVDPETGLIDYDALEKMALEF----KPKLIVAGAS--AYPRPIDFKRFREIADEVGAYLLVDMA 197 (402)
T ss_pred ccccceeE---EEecCCcCcccCCcCHHHHHHHHHhC----CCCEEEecCc--ccCCCcCHHHHHHHHHhcCCEEEEEcc
Confidence 44556544 5666642 6899999999999743 1223332222 4567778888875 889999996
Q ss_pred cccc--c----------ceeeeecCCCcccc---cccccc--c-------cCCcccCCCCc-ccHHHHHHHHHHccHHHH
Q psy13453 100 LRRV--Y----------SSCLVPRGQKSLRT---TVLFHF--L-------FQHWQIPLGRR-FRALKLWMTLRSYGLKGL 154 (764)
Q Consensus 100 l~~~--y----------~s~ll~rd~~~l~~---~~s~~~--d-------~~d~tle~SRr-~~ALklWatL~~lG~eGy 154 (764)
.... + ..+++..-.+.+.+ .+-... + .......++-. .....+-.++..+-..++
T Consensus 198 ~~~g~~~~g~~~~~~~~~dv~~~s~sK~l~G~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~ 277 (402)
T cd00378 198 HVAGLVAGGVFPNPLPGADVVTTTTHKTLRGPRGGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEF 277 (402)
T ss_pred chhhhhhcccCCCcccCCcEEEeccccCCCCCCceEEEeccHHHHHHHHHHhCccccCCchHHHHHHHHHHHHHHhhHHH
Confidence 4111 1 11111111111110 000000 0 00111111111 111122223443333467
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEeCCC-CceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEe
Q psy13453 155 QAYLRKHISLAKKFADLVEQDDRFELVCPP-SMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVK 233 (764)
Q Consensus 155 ~~~i~~~i~lA~~l~~~I~~~p~~ell~~P-~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~ 233 (764)
.++.++..++++++.+.|++. +|+++..| ....+.++..+.+ .+ ..++.+.|.+.|......
T Consensus 278 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~v~v~~~~~~--------------~~--~~~~~~~l~~~gI~v~~~ 340 (402)
T cd00378 278 KAYAKQVVENAKALAEALKER-GFKVVSGGTDNHLVLVDLRPKG--------------IT--GKAAEDALEEAGITVNKN 340 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CCeEeecCCCCeEEEEeCCccC--------------CC--HHHHHHHHHHcCcEEcCC
Confidence 888899999999999999987 88887544 4555555543211 11 135566677778644211
Q ss_pred ---ceeC---CeeEEEEeccCC---CCCHHHHHHHHHHHHHHH
Q psy13453 234 ---GSFQ---DRLFMRFAICSS---QTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 234 ---t~l~---g~~~LRi~v~np---~Tt~e~i~~~l~~l~~~~ 267 (764)
.... +...+|++.... ..+.++++.+++.|+++.
T Consensus 341 ~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~~ 383 (402)
T cd00378 341 TLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARAL 383 (402)
T ss_pred cCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 1111 345799976432 357899999999998764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0018 Score=73.85 Aligned_cols=134 Identities=19% Similarity=0.147 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
...+.++.+++++++... ....||.+||+||..|+++||... .+ +.+|.....-
T Consensus 89 ~~~~~~la~~L~~~~~~~----------~~v~~~~sGseA~e~Aik~a~~~~-g~---------------~~ii~~~~~y 142 (426)
T PRK00062 89 TELEVELAELVIELVPSI----------EMVRMVNSGTEATMSAIRLARGYT-GR---------------DKIIKFEGCY 142 (426)
T ss_pred CHHHHHHHHHHHHhCCCC----------CEEEEecCHHHHHHHHHHHHHHHh-CC---------------CeEEEEcCcc
Confidence 345567778888876311 246899999999999999998752 11 2245555556
Q ss_pred chhHHHHHHhC-------CCc----e-E-----EEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc-
Q psy13453 641 NSSVEKSAIIG-------DVP----V-R-----QLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN- 702 (764)
Q Consensus 641 H~Sv~kAa~~l-------Gl~----v-~-----~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp- 702 (764)
|-...-+.... +.. + + .+.+.. -|+++|++.+++. +..+.+|+.--.....|.+-+
T Consensus 143 HG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~l~~~i~~~---~~~~aaiivEpv~~~~G~~~~~ 216 (426)
T PRK00062 143 HGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPY---NDLEAVEELFEEY---GDEIAAVIVEPVAGNMGVVPPK 216 (426)
T ss_pred CCchhhhhhccCccccccCCCCCCCCCcccccceEEcCC---CCHHHHHHHHHhC---CCcEEEEEEeCCcCCCCCcCCC
Confidence 65432222221 110 0 0 111111 2789999988652 223445555544445687777
Q ss_pred ---HHHHHHHHHhcCCEEEEecccccc
Q psy13453 703 ---LEELGPICQEYNIWLHVDAAYAGS 726 (764)
Q Consensus 703 ---l~eIa~i~~~~glwLHVDaA~Gg~ 726 (764)
+++|.++|++||+++++|-+|.|.
T Consensus 217 ~~~l~~l~~l~~~~~~llI~DEv~~G~ 243 (426)
T PRK00062 217 PGFLEGLRELCDEHGALLIFDEVMTGF 243 (426)
T ss_pred HHHHHHHHHHHHHcCCEEEEeechhcc
Confidence 999999999999999999999865
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0085 Score=68.16 Aligned_cols=173 Identities=14% Similarity=0.000 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcch
Q psy13453 563 LEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNS 642 (764)
Q Consensus 563 lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~ 642 (764)
.+.++.+.|++++..+. .....|+.+|||||-.|++.||... .+ +-+|.....-|=
T Consensus 77 ~~~~la~~l~~~~p~~~--------~~~v~f~~sGseA~e~AlklAr~~t-gr---------------~~ii~~~~~yHG 132 (420)
T TIGR00700 77 GYVALAEKLNRIAPGSG--------PKKSVFFNSGAEAVENAVKIARSYT-GR---------------PGVVAFDHGFHG 132 (420)
T ss_pred HHHHHHHHHHHhCCCCC--------CCEEEEeCCcHHHHHHHHHHHHHhc-CC---------------CcEEEECCCcCC
Confidence 34456667777763211 0246899999999999999998752 11 123445555564
Q ss_pred hHHHHHHhCC--------C-----ceEEEecCCCCc-----------ccHHHHHHHHHHhhhcCCCceEEEEeeccCCcc
Q psy13453 643 SVEKSAIIGD--------V-----PVRQLRSDDNGV-----------LRGDALLTAVKEDLAKGLIPCCLIATLGTTGTC 698 (764)
Q Consensus 643 Sv~kAa~~lG--------l-----~v~~Vp~d~~g~-----------md~~~Le~~I~~~~~~G~~p~~VvataGTT~~G 698 (764)
...-+..+.| . .+..+|.....+ -+++.+++.+.... .+....+|++---....|
T Consensus 133 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iAavi~Epi~g~~G 211 (420)
T TIGR00700 133 RTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVIDV-GANNVAALVIEPVQGEGG 211 (420)
T ss_pred CcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHHHHHhhc-CCCcEEEEEECCccCCCC
Confidence 4333333211 1 234444321111 12556777664221 223455665544444456
Q ss_pred cccc----HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 699 AFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 699 aiDp----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
.+-+ +++|+++|++||+||++|-.|.|......-+.....|+ ..|-++ +-|.++.-+..|++
T Consensus 212 ~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~-~pDi~~--lsK~l~~G~pig~v 277 (420)
T TIGR00700 212 FIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEGP-EPDLIT--TAKSLADGLPLSGV 277 (420)
T ss_pred CccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhhcCC-CCCEEE--eeccccCCcceEEE
Confidence 6544 99999999999999999999987533221111111233 467555 67877643444443
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0058 Score=68.81 Aligned_cols=219 Identities=10% Similarity=0.013 Sum_probs=123.5
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCc
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPL 94 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wl 94 (764)
.|.|+..++...|... +.++. .|+++|++.++... .+.+-+++......++|.+-|++++.+ ++++
T Consensus 140 ~h~s~~~~~~~~g~~~---~~~~~-----~d~~~l~~~l~~~~-~~~~~~v~~e~~~~~~G~~~~l~~i~~l~~~~~~~l 210 (402)
T TIGR01821 140 NHASMIEGIRHSGAEK---FIFRH-----NDVAHLEKLLQSVD-PNRPKIIAFESVYSMDGDIAPIEEICDLADKYGALT 210 (402)
T ss_pred HhHHHHHHHHHcCCeE---EEECC-----CCHHHHHHHHHhcc-CCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEE
Confidence 5777777777776544 44432 37888999887531 112224466778889999999999876 8899
Q ss_pred eeccccc----cccceeeeec-----CCCccccccccc------c-----c---c-----CCcccCCCC-cccHHHHHHH
Q psy13453 95 KVGGVLR----RVYSSCLVPR-----GQKSLRTTVLFH------F-----L---F-----QHWQIPLGR-RFRALKLWMT 145 (764)
Q Consensus 95 HVDa~l~----~~y~s~ll~r-----d~~~l~~~~s~~------~-----d---~-----~d~tle~SR-r~~ALklWat 145 (764)
+||.+.. ..++..+... +......+|+=. + + + ..+....+- ...+....++
T Consensus 211 ivDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~GG~i~~~~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aa 290 (402)
T TIGR01821 211 YLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVVGGYIAASRKLIDAIRSYAPGFIFTTSLPPAIAAGATAS 290 (402)
T ss_pred EEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhccCCceeecCHHHHHHHHHhCcCceecCcCCHHHHHHHHHH
Confidence 9999753 1221111110 111111111100 0 0 0 001111111 1112233445
Q ss_pred HHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHh
Q psy13453 146 LRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIA 225 (764)
Q Consensus 146 L~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~ 225 (764)
|+.+-.. .++.++..++++++.+.+++. +++++. +..+++.+... ......++.++|.+
T Consensus 291 L~~~~~~--~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~i~~i~~~-----------------~~~~a~~~~~~L~~ 349 (402)
T TIGR01821 291 IRHLKES--QDLRRAHQENVKRLKNLLEAL-GIPVIP-NPSHIVPVIIG-----------------DAALCKKVSDLLLN 349 (402)
T ss_pred HHHhhcC--HHHHHHHHHHHHHHHHHHHHc-CCCcCC-CCCCEEEEEeC-----------------CHHHHHHHHHHHHh
Confidence 5544322 334445568899999999886 777553 45666666431 11123578888875
Q ss_pred c-CcEEEEec--ee-CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 226 R-KVIYIVKG--SF-QDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 226 ~-G~~~vs~t--~l-~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
+ |....... .+ .+...+|+++.- ..++++++.+++.++++.++
T Consensus 350 ~~Gi~v~~~~~p~~~~g~~~lRis~~~-~~t~edi~~~~~~l~~~~~~ 396 (402)
T TIGR01821 350 KHGIYVQPINYPTVPRGTERLRITPTP-AHTDKMIDDLVEALLLVWDR 396 (402)
T ss_pred cCCEEEEeECCCCCCCCCceEEEEeCC-CCCHHHHHHHHHHHHHHHHH
Confidence 4 75433221 12 345689996554 45689999999999888755
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0023 Score=71.01 Aligned_cols=113 Identities=17% Similarity=0.067 Sum_probs=83.1
Q ss_pred CcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCC--ccccccHHHHHHHHHhcCCE
Q psy13453 639 QSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTG--TCAFDNLEELGPICQEYNIW 716 (764)
Q Consensus 639 ~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~--~GaiDpl~eIa~i~~~~glw 716 (764)
-.|+++...++..|.+++.|- ..++-...+++.+|.+..+ ++.-+..++. +|.+ +++++++||+++|++
T Consensus 119 gg~~~v~d~~~~aG~~l~EvG--~tn~t~~~d~~~AIne~ta------~llkV~s~~~~f~~~l-~~~~l~~ia~~~~lp 189 (395)
T COG1921 119 GGAFRVPDIIRLAGAKLVEVG--TTNRTHLKDYELAINENTA------LLLKVHSSNYGFTGML-SEEELVEIAHEKGLP 189 (395)
T ss_pred CCCCChhHHHHHcCCEEEEec--ccCcCCHHHHHHHhccCCe------eEEEEeeccccccccc-cHHHHHHHHHHcCCC
Confidence 689999999999998877654 5677899999999998765 4444444432 2222 678899999999999
Q ss_pred EEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 717 LHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 717 LHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
+.||+|-|.-.-.-+..+..++ ..||-+++|+||+|+.|. .|++
T Consensus 190 vivD~aSg~~v~~e~~l~~~la--~GaDLV~~SgdKllgGPq-aGii 233 (395)
T COG1921 190 VIVDLASGALVDKEPDLREALA--LGADLVSFSGDKLLGGPQ-AGII 233 (395)
T ss_pred EEEecCCccccccccchhHHHh--cCCCEEEEecchhcCCCc-cceE
Confidence 9999987763322222232221 246999999999999998 6765
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0071 Score=69.54 Aligned_cols=166 Identities=10% Similarity=-0.012 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
+....++.+.|+++...+- ....|+.+|||||-.|++.||... .+ +-+|.....-
T Consensus 94 ~~~~~~lae~L~~~~p~~~---------~~v~f~~SGsEAve~AlklAr~~t-gr---------------~~ii~~~~~y 148 (451)
T PRK06062 94 NDARSEAARLIAERAPGDL---------SKVFFTNGGADANEHAVRMARLHT-GR---------------PKVLSAYRSY 148 (451)
T ss_pred CHHHHHHHHHHHHhCCCCC---------CEEEEcCChHHHHHHHHHHHHHhh-CC---------------ceEEEEeCCC
Confidence 4455666777777763211 246899999999999999999762 11 1134444444
Q ss_pred chhHHHHHHhCCC-----------ceEEEecCCCCc------cc-------HHHHHHHHHHhhhcCCCceEEEEeeccCC
Q psy13453 641 NSSVEKSAIIGDV-----------PVRQLRSDDNGV------LR-------GDALLTAVKEDLAKGLIPCCLIATLGTTG 696 (764)
Q Consensus 641 H~Sv~kAa~~lGl-----------~v~~Vp~d~~g~------md-------~~~Le~~I~~~~~~G~~p~~VvataGTT~ 696 (764)
|=...-+..+.|. .+..++.....+ -| +++|++.|+.. .+..+.+|++---...
T Consensus 149 HG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~iAaviiEPv~g~ 226 (451)
T PRK06062 149 HGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLERVIELE--GPSTIAAILLESVPGT 226 (451)
T ss_pred CCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHhc--CCCceEEEEEccccCC
Confidence 5333333332221 233333221111 12 67788887532 1123445554444444
Q ss_pred cccccc----HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCC
Q psy13453 697 TCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLV 756 (764)
Q Consensus 697 ~GaiDp----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~ 756 (764)
.|.+-| +++|.++|++||+.|++|-.+.|+-....-+....-|+ ..|-+++ -|.++.
T Consensus 227 gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv-~PDi~t~--gK~lgg 287 (451)
T PRK06062 227 AGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGV-VPDLITF--AKGVNS 287 (451)
T ss_pred CCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcCC-CCCeeee--chhhhc
Confidence 577778 99999999999999999999988433222222223466 5786654 677765
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.007 Score=66.62 Aligned_cols=209 Identities=11% Similarity=0.023 Sum_probs=121.9
Q ss_pred eeHH-HHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc------CCCc
Q psy13453 22 YESF-KATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS------NGPL 94 (764)
Q Consensus 22 YSv~-KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~------~~wl 94 (764)
|+.. ..++.+|+.. +.||+++++.+|+++|++. +.+++-+.++.++|.+-|.+++.+ ++|+
T Consensus 111 y~~~~~~~~~~g~~~---~~v~~~~~~~~d~~~l~~~---------~~~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~~l 178 (353)
T PRK05387 111 YSFYPVYAGLYGIPY---EEIPLDDDFSIDVEDYLRP---------NGGIIFPNPNAPTGIALPLAEIERILAANPDSVV 178 (353)
T ss_pred HHHHHHHHHHcCCEE---EEeecCCCCCCCHHHHHhc---------CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCcEE
Confidence 4444 4478889877 9999998899999999741 235567778999999988877543 6788
Q ss_pred eeccccccccc--ee--eeecCCCc-ccccccc---------ccccC---------CcccC-CCCcccHHHHHHHHHHcc
Q psy13453 95 KVGGVLRRVYS--SC--LVPRGQKS-LRTTVLF---------HFLFQ---------HWQIP-LGRRFRALKLWMTLRSYG 150 (764)
Q Consensus 95 HVDa~l~~~y~--s~--ll~rd~~~-l~~~~s~---------~~d~~---------d~tle-~SRr~~ALklWatL~~lG 150 (764)
.+|..... |. +. ++-..... .-.+|+- .+-.. ...-. .+-....+..+++...+-
T Consensus 179 ivDe~y~~-~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~ 257 (353)
T PRK05387 179 VIDEAYVD-FGGESAIPLIDRYPNLLVVQTFSKSRSLAGLRVGFAIGHPELIEALNRVKNSFNSYPLDRLAQAGAIAAIE 257 (353)
T ss_pred EEeCcccc-cCCcchHHHHhhCCCEEEEEehhHhhcchhhhceeeecCHHHHHHHHHhhccCCCCCcCHHHHHHHHHHhc
Confidence 88875321 11 00 00000000 0000110 00000 00000 011223444555555553
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcE
Q psy13453 151 -LKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVI 229 (764)
Q Consensus 151 -~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~ 229 (764)
.+.+.+..++..+..+++.+.++++ ++++. ++..+.+.++.. ..+ ..++.++|.++|..
T Consensus 258 ~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~----------------~~~--~~~~~~~l~~~gi~ 317 (353)
T PRK05387 258 DEAYFEETRAKVIATRERLVEELEAL-GFEVL-PSKANFVFARHP----------------SHD--AAELAAKLRERGII 317 (353)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHC-CCeEC-CCcCcEEEEECC----------------CCC--HHHHHHHHHHCCEE
Confidence 3446677777788888999999987 77753 445554444321 111 24678888888976
Q ss_pred EEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13453 230 YIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 230 ~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~ 267 (764)
+.....-....++|+++. ++++++.+++.|+++.
T Consensus 318 v~~~~~~~~~~~iRis~~----~~~~~~~~~~~L~~~~ 351 (353)
T PRK05387 318 VRHFNKPRIDQFLRITIG----TDEEMEALVDALKEIL 351 (353)
T ss_pred EEECCCCCCCCeEEEEeC----CHHHHHHHHHHHHHHh
Confidence 543221123468999886 4589999999988764
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0025 Score=70.55 Aligned_cols=205 Identities=8% Similarity=0.011 Sum_probs=122.1
Q ss_pred eHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-------CCCce
Q psy13453 23 ESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-------NGPLK 95 (764)
Q Consensus 23 Sv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-------~~wlH 95 (764)
....+++..|... +.||+++++++|+++|+++++ . +-+++-+-++-+||.+=+.+++.+ +.++.
T Consensus 111 ~y~~~~~~~G~~~---~~v~~~~~~~~d~~~l~~~~~-~-----~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vi 181 (351)
T PRK01688 111 MYSVSAETIGVEI---RTVPTLDNWQLDLPAIADNLD-G-----VKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVV 181 (351)
T ss_pred HHHHHHHHcCCEE---EEeecCCCCCCCHHHHHHhcc-C-----CcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEE
Confidence 3466789999887 899998889999999999873 1 235545589999999987666443 46788
Q ss_pred eccccc--ccc----------ceeeeecCCCccccccc-----cccccCCc-------ccCCCCcccHHHHHHHHHHc--
Q psy13453 96 VGGVLR--RVY----------SSCLVPRGQKSLRTTVL-----FHFLFQHW-------QIPLGRRFRALKLWMTLRSY-- 149 (764)
Q Consensus 96 VDa~l~--~~y----------~s~ll~rd~~~l~~~~s-----~~~d~~d~-------tle~SRr~~ALklWatL~~l-- 149 (764)
+|.+.. ... ...+..|. +...|. ..+-+++. .....-....+..-++...+
T Consensus 182 vDEay~~f~~~~s~~~~~~~~~n~iv~rS---fSK~~glaGlRiGy~i~~~~~i~~l~~~~~~~~v~~~~~~~a~~~L~~ 258 (351)
T PRK01688 182 ADEAYIEFCPQASLAGWLAEYPHLVILRT---LSKAFALAGLRCGFTLANEEVINLLLKVIAPYPLSTPVADIAAQALSP 258 (351)
T ss_pred EECchhhcCCCCChHHHHhhCCCEEEEec---chHhhcCHHHHHhHHhCCHHHHHHHHhccCCCCCCHHHHHHHHHHHhc
Confidence 888631 110 01111111 001110 00100000 00000011122222222232
Q ss_pred -cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCc
Q psy13453 150 -GLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKV 228 (764)
Q Consensus 150 -G~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~ 228 (764)
+.+-+.+.++...+..+++.+.|++.++++.+.++..+-+.+++. + ..++.++|.++|.
T Consensus 259 ~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ps~~nfi~~~~~----------------~----~~~l~~~L~~~gi 318 (351)
T PRK01688 259 QGIAAMRERVAEINANRQWLIAALKEIPCVEQVFDSETNYILARFT----------------A----SSAVFKSLWDQGI 318 (351)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcC----------------C----HHHHHHHHHHCCe
Confidence 345567777777788889999999988886566666665555431 0 1468888999998
Q ss_pred EEEEecee-CCeeEEEEeccCCCCCHHHHHHHHHHH
Q psy13453 229 IYIVKGSF-QDRLFMRFAICSSQTEESDVQLGWNEI 263 (764)
Q Consensus 229 ~~vs~t~l-~g~~~LRi~v~np~Tt~e~i~~~l~~l 263 (764)
.+...... ....++|+++. ++++.+.+++.|
T Consensus 319 ~vr~~~~~~~~~~~iRis~~----~~~e~~~l~~al 350 (351)
T PRK01688 319 ILRDQNKQPGLSNCLRITIG----TREECQRVIDAL 350 (351)
T ss_pred EEEECCCcCCCCCeEEEeCC----CHHHHHHHHHhh
Confidence 66544322 22468999887 468888888876
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0021 Score=70.23 Aligned_cols=197 Identities=13% Similarity=0.054 Sum_probs=107.0
Q ss_pred EEecCCCCCcccHHHHHHHHHHHhhCCCCc-EE-EEeeCCcccccccCchhhhc--------CCCceeccccc--cc-c-
Q psy13453 39 RLSGLPDSEWLAYLTLRTIYESFRKSFLCP-MC-SGYCGRTLHQDIQSLNAPVS--------NGPLKVGGVLR--RV-Y- 104 (764)
Q Consensus 39 ~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p-~~-VatAGTT~~G~iDpi~~ia~--------~~wlHVDa~l~--~~-y- 104 (764)
+.+++++++++|+++|+++|.++...+..+ ++ +.+ .++|++-|.+++.+ ++|++||.+.. .. +
T Consensus 101 ~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~n---p~~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~ 177 (333)
T PRK10534 101 QPIDAAADGTLPLDKVAAKIKPDDIHFARTRLLSLEN---THNGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAY 177 (333)
T ss_pred EeecCCCCCCCCHHHHHHhhcccCcCcccceEEEEec---CCCCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHc
Confidence 677778889999999999996532211112 33 453 44599988877542 78999998521 00 0
Q ss_pred c-eee-eecCCCccccccccccccCC-cc--cCCCC----cccHHH-HH-------HHHHHccHHHH---HHHHHHHHHH
Q psy13453 105 S-SCL-VPRGQKSLRTTVLFHFLFQH-WQ--IPLGR----RFRALK-LW-------MTLRSYGLKGL---QAYLRKHISL 164 (764)
Q Consensus 105 ~-s~l-l~rd~~~l~~~~s~~~d~~d-~t--le~SR----r~~ALk-lW-------atL~~lG~eGy---~~~i~~~i~l 164 (764)
. ... +.+..+.+..+|+= .|+. .+ +-++. +...++ .| ......|...+ .+.+++..+.
T Consensus 178 ~~~~~~~~~~~~~~~~s~SK--~~~~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~ 255 (333)
T PRK10534 178 GCELKEITQYCDSFTICLSK--GLGTPVGSLLVGNRDYIKRARRWRKMTGGGMRQAGILAAAGLYALKHNVARLQEDHDN 255 (333)
T ss_pred CCCHHHHHhcCCEEEEEeEc--CCCCcccceEEcCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 0 000 00000000001110 0110 00 00011 000000 01 01122233333 3556666677
Q ss_pred HHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEE
Q psy13453 165 AKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRF 244 (764)
Q Consensus 165 A~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi 244 (764)
.+++.+.|++. ++++. +|+.+.+.+++.+ . -..++.+.|.++|+.... + ..+|+
T Consensus 256 r~~l~~~L~~~-g~~~~-~~~~nfv~~~~~~----------------~--~~~~~~~~l~~~gi~v~~-----~-~~~rl 309 (333)
T PRK10534 256 AAWLAEQLREA-GADVM-RQDTNMLFVRVGE----------------E--QAAALGEYMRERNVLINA-----S-PIVRL 309 (333)
T ss_pred HHHHHHHHHhC-CCccC-CCCceEEEEECCc----------------h--hHHHHHHHHHHcCeeecC-----C-ceEEE
Confidence 78999999986 78754 5677766666421 0 124677899999986422 1 24788
Q ss_pred eccCCCCCHHHHHHHHHHHHHHH
Q psy13453 245 AICSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 245 ~v~np~Tt~e~i~~~l~~l~~~~ 267 (764)
+. +.++++++++.+++.+++..
T Consensus 310 ~~-~~r~t~e~~~~~~~~l~~~~ 331 (333)
T PRK10534 310 VT-HLDVSREQLAEVVAHWRAFL 331 (333)
T ss_pred EE-EeCCCHHHHHHHHHHHHHHh
Confidence 65 55678999999999998653
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0063 Score=68.30 Aligned_cols=223 Identities=13% Similarity=0.088 Sum_probs=125.9
Q ss_pred eHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccC---chhhhc-----CCCc
Q psy13453 23 ESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQS---LNAPVS-----NGPL 94 (764)
Q Consensus 23 Sv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDp---i~~ia~-----~~wl 94 (764)
....+++..|+.. +.||+++++.+|+++|+++|++. +-+++-+-+..++|.+=| +.++++ ++++
T Consensus 125 ~~~~~~~~~g~~~---~~v~~~~~~~~d~~~l~~~i~~~-----~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~l 196 (389)
T PRK05957 125 NHEMAITMAGCQP---ILVPTDDNYQLQPEAIEQAITPK-----TRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYH 196 (389)
T ss_pred CHHHHHHhcCCEE---EEeecCCCCCcCHHHHHHhcCcC-----ceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEE
Confidence 4455677888876 89999988999999999998642 225555568999998876 555543 7788
Q ss_pred eeccccccc-cc-----eee-eecCCCcc--ccccccccccCCcccC------------------CCCcccHHHHHHHHH
Q psy13453 95 KVGGVLRRV-YS-----SCL-VPRGQKSL--RTTVLFHFLFQHWQIP------------------LGRRFRALKLWMTLR 147 (764)
Q Consensus 95 HVDa~l~~~-y~-----s~l-l~rd~~~l--~~~~s~~~d~~d~tle------------------~SRr~~ALklWatL~ 147 (764)
-+|.+.... |. +.. +....... -.+||=.+....+-+. .+-....+...++..
T Consensus 197 i~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~ 276 (389)
T PRK05957 197 ISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVIPIHLLEAIKKIQDTILICPPVVSQYAALG 276 (389)
T ss_pred EEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCccceeEEEecCHHHHHHHHHHHhhcccCCCcHHHHHHHH
Confidence 778753211 11 100 00000000 0011100000000000 000111233344444
Q ss_pred Hc--cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHh
Q psy13453 148 SY--GLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIA 225 (764)
Q Consensus 148 ~l--G~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~ 225 (764)
.+ |.+-+++..++.-+..+++.+.|++.+++..+.+|+-+..+|--.|. +.+ ..++.++|.+
T Consensus 277 ~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~gg~~~~~~~~~--------------~~~--~~~~~~~l~~ 340 (389)
T PRK05957 277 ALQVGKSYCQQHLPEIAQVRQILLKSLGQLQDRCTLHPANGAFYCFLKVNT--------------DLN--DFELVKQLIR 340 (389)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCeeEEEEEeCCC--------------CCC--hHHHHHHHHH
Confidence 44 44445777777777778888999988775445677766555421121 111 2567788764
Q ss_pred -cCcEEEEecee--CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy13453 226 -RKVIYIVKGSF--QDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVL 271 (764)
Q Consensus 226 -~G~~~vs~t~l--~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~ 271 (764)
.|..+...... ++..++|+++..+ +++++++.++.|.+..+.+.
T Consensus 341 ~~gv~v~pg~~f~~~~~~~iRis~~~~--~~~~l~~~~~~l~~~~~~~~ 387 (389)
T PRK05957 341 EYRVAVIPGTTFGMKNGCYLRIAYGAL--QKATAKEGIERLVQGLKTIV 387 (389)
T ss_pred HCCEEEccchhhCCCCCCEEEEEEecC--CHHHHHHHHHHHHHHHHhhh
Confidence 68765544333 2345899998664 47788888887777665543
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0033 Score=69.86 Aligned_cols=212 Identities=14% Similarity=0.063 Sum_probs=127.8
Q ss_pred eHHHHHhhcCCCCCCeEEecCCCCC----cccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccC-chhhhcCCCceec
Q psy13453 23 ESFKATHSLSGTPDQVRLSGLPDSE----WLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQS-LNAPVSNGPLKVG 97 (764)
Q Consensus 23 Sv~KAa~~LGl~~~~v~~Vpvd~~~----rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDp-i~~ia~~~wlHVD 97 (764)
-+.+-|+.+|+ . ..+++++.+ -.|++.++. +. ..-++.-|-..|.+|+.-| +.+.. +..+-||
T Consensus 94 r~~~~a~~~g~-~---~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~v~~th~ETstGv~~~~l~~~~-~~l~iVD 161 (349)
T TIGR01364 94 KAAKEAKKYGV-V---NVVASGKEGNYTKIPDPSTWEI--SE-----DAAYVHYCANETIHGVEFRELPDVK-NAPLVAD 161 (349)
T ss_pred HHHHHHHHhCC-c---EEEeccccCCCCCCCCHHhcCC--CC-----CCCEEEEcCCCCcccEecceecccC-CCeEEEE
Confidence 34677788888 6 677765433 345554441 11 2224447888999999844 44433 5666777
Q ss_pred ccc------------------cc----ccc-eeeeecCCCccccccccccccCCcc-------cCCCC-cccHHHHHHHH
Q psy13453 98 GVL------------------RR----VYS-SCLVPRGQKSLRTTVLFHFLFQHWQ-------IPLGR-RFRALKLWMTL 146 (764)
Q Consensus 98 a~l------------------~~----~y~-s~ll~rd~~~l~~~~s~~~d~~d~t-------le~SR-r~~ALklWatL 146 (764)
|.- .| +.+ +++.++++- +...-.....+.+|. .-++= -.....+-.+|
T Consensus 162 avss~g~~~id~~~~d~~~~ssqK~lgP~Glg~l~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al 240 (349)
T TIGR01364 162 MSSNILSRPIDVSKFGLIYAGAQKNIGPAGLTVVIVRKDL-LGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVF 240 (349)
T ss_pred ccccccCccCCHHHccEEEEecccccCCCceEEEEECHHH-HhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 721 11 122 344444321 110000001122211 11222 22234778889
Q ss_pred HHccHH-HHHHHHHHHHHHHHHHHHHHhcCCCeEEeC-CCC--c-eeEEEEeeccccccccccccCccCCccHHHHHHHH
Q psy13453 147 RSYGLK-GLQAYLRKHISLAKKFADLVEQDDRFELVC-PPS--M-GLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYD 221 (764)
Q Consensus 147 ~~lG~e-Gy~~~i~~~i~lA~~l~~~I~~~p~~ell~-~P~--l-~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~ 221 (764)
+++=.+ |+.++.++...+++++.+.+++.++|.... +|. . .+++|++.. . .+..++.+
T Consensus 241 ~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~----------------~-~~~~~~~~ 303 (349)
T TIGR01364 241 KWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGN----------------E-ELEKRFLK 303 (349)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCC----------------h-hHhHHHHH
Confidence 999888 799999999999999999999999876664 222 3 568887531 1 23356777
Q ss_pred HHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13453 222 RIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 222 ~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~ 267 (764)
.+.++|. ++.. ..+....+|+++ .+.++.+||+.+++.|+++.
T Consensus 304 ~~~~~Gi-~~~~-~~~~~g~vRvS~-~~~nt~edid~l~~al~~~~ 346 (349)
T TIGR01364 304 EAEERGL-VSLK-GHRSVGGMRASI-YNAMPLEGVQALVDFMKEFQ 346 (349)
T ss_pred HHHHCCC-cccC-CccccCeeEEEC-cCCCCHHHHHHHHHHHHHHH
Confidence 8888998 3322 221224799976 66678999999999999865
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0078 Score=69.39 Aligned_cols=171 Identities=12% Similarity=0.045 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
....++.+.|++++.-+- ....|+.+|||||-.|++.||...... +..+ .+-+|.....-|
T Consensus 95 ~~~~~la~~l~~~~p~~~---------~~v~f~~sGseAve~AlklAr~~~~~~-g~~~---------r~~ii~~~~~yH 155 (460)
T PRK06541 95 PPAIELAERLAALAPGDL---------NRVFFTTGGSEAVESAWKLAKQYFKLT-GKPG---------KHKVISRAIAYH 155 (460)
T ss_pred HHHHHHHHHHHHhCCCCc---------CEEEEcCCcHHHHHHHHHHHHHHHHhc-CCCC---------ccEEEEEcCccc
Confidence 444556666777653211 246899999999999999999764211 1000 112344444445
Q ss_pred hhHHHHHHhCCC------------ceEEEecCCCCc-----cc--------HHHHHHHHHHhhhcCCCceEEEEeeccCC
Q psy13453 642 SSVEKSAIIGDV------------PVRQLRSDDNGV-----LR--------GDALLTAVKEDLAKGLIPCCLIATLGTTG 696 (764)
Q Consensus 642 ~Sv~kAa~~lGl------------~v~~Vp~d~~g~-----md--------~~~Le~~I~~~~~~G~~p~~VvataGTT~ 696 (764)
=...-+..+.|. .+..+|.....+ -+ ++.|++.+.+. ....+.+|+..--...
T Consensus 156 G~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~Aavi~EPv~g~ 233 (460)
T PRK06541 156 GTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFE--GPDTVAAVFLEPVQNA 233 (460)
T ss_pred CcchhhhcCcCChhhccccCCCCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhc--CCCCEEEEEECCccCC
Confidence 333333322211 244454332111 11 35677766532 1233455555444556
Q ss_pred cccccc----HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCC
Q psy13453 697 TCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLV 756 (764)
Q Consensus 697 ~GaiDp----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~ 756 (764)
.|.+-+ +.+|+++|++||+.|++|-++.|+-....-+.....|+ ..|-++ +-|.++.
T Consensus 234 ~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv-~PDivt--~gK~l~~ 294 (460)
T PRK06541 234 GGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGY-VPDIIT--CAKGITS 294 (460)
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCC-CCCEEE--ecccccC
Confidence 688877 99999999999999999999955422222222222355 467665 5787764
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0076 Score=68.67 Aligned_cols=174 Identities=15% Similarity=0.053 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
+..+.++.+.|++++..+.. ....|+++|||||-.|++.||... .+ +-++.....-
T Consensus 82 ~~~~~~la~~l~~~~p~~~~--------~~~~f~~sGseA~e~AlklAr~~t-gr---------------~~ii~~~~~y 137 (421)
T PRK09792 82 YESYVTLAEKINALAPVSGQ--------AKTAFFTTGAEAVENAVKIARAHT-GR---------------PGVIAFSGGF 137 (421)
T ss_pred CHHHHHHHHHHHHhCCCCCC--------ceEEEeCChHHHHHHHHHHHHHhc-CC---------------CeEEEECCCc
Confidence 44555666777777643210 245899999999999999999641 11 1133334444
Q ss_pred chhHHHHHHhCC--------C-----ceEEEecC--CCCcc----cHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc
Q psy13453 641 NSSVEKSAIIGD--------V-----PVRQLRSD--DNGVL----RGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD 701 (764)
Q Consensus 641 H~Sv~kAa~~lG--------l-----~v~~Vp~d--~~g~m----d~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD 701 (764)
|=...-+..+.| . .+..+|.. .++ + +.+++++.+++.. ....+.+|+..--....|..-
T Consensus 138 HG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~-~~~~~~~~~l~~~~~~~~-~~~~iaavi~EPvq~~~G~~~ 215 (421)
T PRK09792 138 HGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHG-ISTQDSLDAIERLFKSDI-EAKQVAAIIFEPVQGEGGFNV 215 (421)
T ss_pred CCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccc-ccHHHHHHHHHHHHHhcc-CCCceEEEEEccccCCCCCcc
Confidence 432222222211 1 24445542 222 2 3467777775421 122355666655555556443
Q ss_pred -c---HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 702 -N---LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 702 -p---l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
| +++|.++|++||++|++|-.+.|.-....-+....-|+ ..|- ..+-|.++.-+..|++
T Consensus 216 ~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~-~pDi--~t~gK~l~~G~pigav 278 (421)
T PRK09792 216 APKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYAD-KPDL--MTMAKSLAGGMPLSGV 278 (421)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcCC-CCcE--EEeehhhcCCCceEEE
Confidence 5 99999999999999999999988533221111111133 4563 4557887654445543
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0045 Score=69.00 Aligned_cols=203 Identities=8% Similarity=-0.020 Sum_probs=121.0
Q ss_pred eEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc--CCCceecccc---------------
Q psy13453 38 VRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS--NGPLKVGGVL--------------- 100 (764)
Q Consensus 38 v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~--~~wlHVDa~l--------------- 100 (764)
+..++++....++.+ +. .++-+++.|...|.+|++-||++|+. ++.+-|||+-
T Consensus 110 ~~~~~~~~~~~~~~~-----~~-----~~~~lV~~~h~et~tG~~~pi~~I~~~~g~~~iVDavqs~g~~~idv~~~D~~ 179 (361)
T TIGR01366 110 PIIVTADPGSAPEPQ-----AD-----PGVDVIAWAHNETSTGVAVPVRRPEGSDDALVVIDATSGAGGLPVDIAETDVY 179 (361)
T ss_pred ceEEecCCCCCCCCc-----cC-----CCCCEEEEcccCCccceecccccccccCCCeEEEEcCccccCCCCCHHHCCEE
Confidence 577777754444432 22 13346668999999999999999975 6788899831
Q ss_pred ---ccc-c---ce--eeeecCCCc--ccccccc------cccc---CCcccC----CCCcccHH-HHHHHHHHccHH-HH
Q psy13453 101 ---RRV-Y---SS--CLVPRGQKS--LRTTVLF------HFLF---QHWQIP----LGRRFRAL-KLWMTLRSYGLK-GL 154 (764)
Q Consensus 101 ---~~~-y---~s--~ll~rd~~~--l~~~~s~------~~d~---~d~tle----~SRr~~AL-klWatL~~lG~e-Gy 154 (764)
.|+ + ++ ++.++++.. +...... ..|+ .....+ .+=...++ .+-.+++++-.+ |+
T Consensus 180 ~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~ 259 (361)
T TIGR01366 180 YFAPQKNFASDGGLWLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGL 259 (361)
T ss_pred EEEchhhcCCCCceEEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCH
Confidence 111 1 11 222233111 1100000 0111 111111 12122222 567778888777 69
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEeCC-CC--c-eeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEE
Q psy13453 155 QAYLRKHISLAKKFADLVEQDDRFELVCP-PS--M-GLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIY 230 (764)
Q Consensus 155 ~~~i~~~i~lA~~l~~~I~~~p~~ell~~-P~--l-~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~ 230 (764)
..+.++..++++++.+.+++.+.++++.+ +. . .+.+|.+ +++. + ...+.+.|.++|...
T Consensus 260 e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~-~~g~--------------~--~~~v~~~L~~~gI~i 322 (361)
T TIGR01366 260 DWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDF-VDDI--------------D--AATVAKILRANGIVD 322 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEEC-CCcc--------------C--HHHHHHHHHHCCCee
Confidence 99999999999999999999988887753 21 2 2233444 2211 1 146778888888754
Q ss_pred EEec-eeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 231 IVKG-SFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 231 vs~t-~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
...- .+. ...+|++.++ .++.++++.+++.|+++.++
T Consensus 323 ~~~~~~l~-~~~vRis~~~-~~t~~di~~l~~al~~~~~~ 360 (361)
T TIGR01366 323 TEPYRKLG-RNQLRVAMFP-AIDPDDVEALTECVDWVVER 360 (361)
T ss_pred ccCccccC-CCcEEEEcCC-CCCHHHHHHHHHHHHHHHhh
Confidence 2211 222 3579997665 77899999999999997654
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0085 Score=66.69 Aligned_cols=218 Identities=13% Similarity=0.035 Sum_probs=133.1
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCCCCCccccccCCCCChHHHHH-HHHHH-hhcccC--ccccCCchHHHHHHHHHHHHHH
Q psy13453 498 EGEDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVG-DMLSG-AFGLIG--FSWLSSPACTELEVLVMNWLGK 573 (764)
Q Consensus 498 ~g~~~~~il~~l~~~i~~~~~~~~~P~~~~~~~~~~~~~~~la-d~l~~-~lN~n~--~~~~~sp~~t~lE~~v~~~la~ 573 (764)
++.+-.+++++++++...+. ..+.|.|.-.-+.-.|+++- .++.. .|=+.- ...+.|...-+.--+-...+++
T Consensus 55 ~~~sE~e~l~~l~~ia~kN~---~~~sfiG~GyY~~~~P~vI~rnile~pewyTaYTPYQpEISQGrLqaLfefQtlv~d 131 (450)
T COG0403 55 KPLSEYEALAELKEIASKNK---VFTSFIGAGYYDTYTPPVILRNILENPEWYTAYTPYQPEISQGRLEALFEFQTLVAD 131 (450)
T ss_pred CCCCHHHHHHHHHHHHhcCc---hhhhhccCcccCCcCcHHHHHHhhcCccccccCCCCchhhhhHHHHHHHHHHHHHHH
Confidence 45688999999999765543 44556555444444455555 33321 111111 1123344433344445578899
Q ss_pred HcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHH----
Q psy13453 574 ALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAI---- 649 (764)
Q Consensus 574 llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~---- 649 (764)
|.|++- +...+-.++|.+ --|+.+|+..... ++-.++++...|..-....+
T Consensus 132 LTGm~V---------ANASm~DeaTAa-AEAm~ma~r~~k~---------------k~~~~~V~~~vhpqt~~Vl~Tra~ 186 (450)
T COG0403 132 LTGLDV---------ANASMLDEATAA-AEAMLMAKRVTKK---------------KRNKFLVPKDVHPQTLDVLRTRAE 186 (450)
T ss_pred HhCCCc---------ccchhhhhHHHH-HHHHHHHHHhhcC---------------cCceEEecCCCCHHHHHHHHhhcc
Confidence 999986 344566777744 3344444332111 12258899999988666544
Q ss_pred hCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccc
Q psy13453 650 IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALL 729 (764)
Q Consensus 650 ~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~ 729 (764)
-+|+.+..++.+ |.++|+++ ... ..+.|+....++.-+.++|+.+|.++++++|..+.|=+=--+..++
T Consensus 187 ~~g~~i~~~~~~-----d~~~l~~~-~~~-----~~~gv~vQyP~~~G~~~~d~~~l~~~~h~~~al~~v~aDplaL~LL 255 (450)
T COG0403 187 GLGIEIEVVDAD-----DLDDLESA-DDG-----DVFGVLVQYPNTFGIVEEDLRALIEAAHSAGALVIVAADPLALGLL 255 (450)
T ss_pred cCceEEEEeccc-----hhhhhhhc-ccc-----CeEEEEEecCCCCCccchhHHHHHHHHhhcCCEEEEEechhHhhcc
Confidence 356777777766 78888877 321 2578888998865447888999999999999977654321111222
Q ss_pred cchhhhhhcCCCcccEEEEcCCccCCCCcCce
Q psy13453 730 LPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCS 761 (764)
Q Consensus 730 ~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g 761 (764)
-|. |==.||-+.=|.+- +|+|.+-|
T Consensus 256 ~pP------Ge~GADIvvG~~Qr-fGvPmgfG 280 (450)
T COG0403 256 KPP------GEFGADIVVGSAQR-FGVPMGFG 280 (450)
T ss_pred CCc------cccCCceEEecCcc-cCCCcCCC
Confidence 232 22257999999998 66787765
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0055 Score=70.85 Aligned_cols=166 Identities=13% Similarity=-0.020 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCC
Q psy13453 560 CTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQ 639 (764)
Q Consensus 560 ~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~ 639 (764)
.+..|.++.+.|++++..- ....|+.+||||+..|++.||.... + +-+|-....
T Consensus 137 ~~~~~~~lAe~l~~~~p~~----------~~v~f~~SGsEA~e~AlklAR~~tg-r---------------~~Ii~~~g~ 190 (474)
T PLN02482 137 PCLLENVLAEMVIDAVPSV----------EMVRFVNSGTEACMGVLRLARAYTG-R---------------EKIIKFEGC 190 (474)
T ss_pred CCHHHHHHHHHHHHhCCCC----------CEEEEeCChHHHHHHHHHHHHHhcC-C---------------CEEEEECCc
Confidence 3467778888898887421 2467999999999999999997621 1 112222222
Q ss_pred cchhHH--HHHHh-----------CCC------ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc
Q psy13453 640 SNSSVE--KSAII-----------GDV------PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF 700 (764)
Q Consensus 640 aH~Sv~--kAa~~-----------lGl------~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai 700 (764)
-|=... -+... -|+ .+..+|-+ |+++|++.|++. +..+.+|+.---....|.+
T Consensus 191 YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~n-----d~~~l~~~l~~~---~~~iAavI~Epv~g~~G~i 262 (474)
T PLN02482 191 YHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYN-----DLEAVKKLFEAN---KGEIAAVILEPVVGNSGFI 262 (474)
T ss_pred cCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecCC-----ChHHHHHHHHhC---CCceEEEEECCCCCCCCCc
Confidence 332110 00000 011 11222221 689999988642 2334555554444445666
Q ss_pred cc----HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 701 DN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 701 Dp----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
-| +++|.++|++||+.|++|-++.|+ ....-+....-|+ ..|-+++ -|.++.-+.+|++
T Consensus 263 ~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~~ga~~~~gv-~PDi~t~--gK~lggG~Pigav 325 (474)
T PLN02482 263 VPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYGGAQEYFGI-TPDLTTL--GKVIGGGLPVGAY 325 (474)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCcchHhHHhCC-CCCEEEe--cchhhCCCceEEE
Confidence 55 568999999999999999998765 3322222222355 4676655 7877654445554
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0074 Score=68.76 Aligned_cols=170 Identities=14% Similarity=0.070 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcch
Q psy13453 563 LEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNS 642 (764)
Q Consensus 563 lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~ 642 (764)
...++.++|+++.+.+-. ..-+|+++|++||-.|++.||... .+ +.+|..+..-|-
T Consensus 85 ~~~~la~~l~~~~~~~~~--------~~~~f~~sGsea~e~Alklar~~~-~r---------------~~iv~~~~~yHG 140 (425)
T PRK08088 85 PYLELCEKMNQKVPGDFA--------KKTLLVTTGSEAVENAVKIARAAT-KR---------------SGVIAFTGAYHG 140 (425)
T ss_pred HHHHHHHHHHHhCCCCCC--------CEEEEeCCcHHHHHHHHHHHHHHh-CC---------------CeEEEECCccCC
Confidence 344677778887654221 245799999999999999998752 11 124555777776
Q ss_pred hHHHHHHhCCC-------------ceEE--EecCCCCccc----HHHHHHHHHHhhhcCCCceEEEEeeccCCccccc--
Q psy13453 643 SVEKSAIIGDV-------------PVRQ--LRSDDNGVLR----GDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD-- 701 (764)
Q Consensus 643 Sv~kAa~~lGl-------------~v~~--Vp~d~~g~md----~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD-- 701 (764)
+..-+..+.+- .+.. +|.+.++ ++ ++.|++.+++.. .+..+.+|+..--...-|.+-
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~l~~~l~~~~-~~~~~aavi~Epi~~~~G~~~~~ 218 (425)
T PRK08088 141 RTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHG-VSEDDAIASIERIFKNDA-APEDIAAIIIEPVQGEGGFYAAS 218 (425)
T ss_pred ccHHHHHhhCCCCccccCCCCCCCCcEEcCCCccccC-ccHHHHHHHHHHHHHhcc-CCCceEEEEECcccCCCCCcCCC
Confidence 65444433221 1222 2333222 33 456777775321 223455555444334445444
Q ss_pred --cHHHHHHHHHhcCCEEEEeccccccccccchh-hhhhcCCCcccEEEEcCCccCCCCcCcee
Q psy13453 702 --NLEELGPICQEYNIWLHVDAAYAGSALLLPEY-AHLKRGLEYVDSFDFNTHKWLLVNFDCSA 762 (764)
Q Consensus 702 --pl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~-r~~l~gie~aDSit~d~HK~l~~P~~~g~ 762 (764)
-+++|.++|++||+++++|-+|++.-. .+.. .....++ ..| ..++-|.++.-+..|+
T Consensus 219 ~~~~~~l~~l~~~~~~~lI~Dev~~g~g~-~g~~~~~~~~~~-~pd--i~s~sK~l~~G~rig~ 278 (425)
T PRK08088 219 PAFMQRLRALCDEHGIMLIADEVQTGAGR-TGTLFAMEQMGV-AAD--LTTFAKSIAGGFPLAG 278 (425)
T ss_pred HHHHHHHHHHHHHcCCEEEEeccccCCCc-CcchhHHhhcCC-CCC--EEEEeccccCCCccee
Confidence 499999999999999999999997322 1211 1111233 234 3566787764343444
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.014 Score=67.96 Aligned_cols=224 Identities=12% Similarity=0.016 Sum_probs=130.8
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCC--C-----CcEEEEeeCC-cccccccCchhhhc-
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSF--L-----CPMCSGYCGR-TLHQDIQSLNAPVS- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G--~-----~p~~VatAGT-T~~G~iDpi~~ia~- 90 (764)
.|.|+..++++.|... +.+|.+ |++.|++.|++....+ + +.++|.+-|. .+.|.+-+++++.+
T Consensus 194 ~h~s~~~~~~~~Ga~v---~~~~~~-----d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~l~~I~~l 265 (489)
T PLN02483 194 NHNSIVNGARGSGATI---RVFQHN-----TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVAV 265 (489)
T ss_pred hhHHHHHHHHHcCCeE---EEEeCC-----CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccCHHHHHHH
Confidence 7899999999999877 888865 5678888777543222 1 1244444444 67799999999876
Q ss_pred ----CCCceecccccccc--------ceeee--ecCCCccccccccc------c--------cc-C----CcccCCCCcc
Q psy13453 91 ----NGPLKVGGVLRRVY--------SSCLV--PRGQKSLRTTVLFH------F--------LF-Q----HWQIPLGRRF 137 (764)
Q Consensus 91 ----~~wlHVDa~l~~~y--------~s~ll--~rd~~~l~~~~s~~------~--------d~-~----d~tle~SRr~ 137 (764)
++++-+|.+....+ +.+.- .++...+-.+|+=. + +. . .++..++-..
T Consensus 266 a~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~~GG~i~~~~~li~~l~~~~~~~~~~~~~~p 345 (489)
T PLN02483 266 CKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKRTCPAHLYATSMSP 345 (489)
T ss_pred HHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhcccCceEEEcCHHHHHHHHHhCccccccCCcCH
Confidence 88998888753211 00100 01111111111100 0 00 0 0111111111
Q ss_pred cHH-HHHHHHHHc----cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCc
Q psy13453 138 RAL-KLWMTLRSY----GLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGD 212 (764)
Q Consensus 138 ~AL-klWatL~~l----G~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~ 212 (764)
.++ .+-++|+.+ |.+-..+++++.-+..++|.+.|+++ ++++..+....++.+....+
T Consensus 346 ~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~-G~~v~~~~~sp~~~l~l~~~---------------- 408 (489)
T PLN02483 346 PAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKM-GFEVLGDNDSPVMPIMLYNP---------------- 408 (489)
T ss_pred HHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHC-CCcccCCCCCCEEEEEECCH----------------
Confidence 111 112234322 22334567788889999999999997 88877665555655543210
Q ss_pred cHHHHHHHHHHHhcCcEEEEecee----CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy13453 213 NDLNKAVYDRIIARKVIYIVKGSF----QDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVL 271 (764)
Q Consensus 213 d~~n~~L~~~L~~~G~~~vs~t~l----~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~ 271 (764)
.--.++.++|.++|.+++. ... .+...+|+|+..-+ ++++++++++.|+++.+.+.
T Consensus 409 -~~~~~~~~~Ll~~GI~v~~-~~fp~~p~~~~~vRi~isa~~-t~edId~~l~~L~~~~~~~~ 468 (489)
T PLN02483 409 -AKIPAFSRECLKQNVAVVV-VGFPATPLLLARARICISASH-SREDLIKALEVISEVGDLVG 468 (489)
T ss_pred -HHHHHHHHHHHHCCcEEee-eCCCCCCCCCceEEEEeCCCC-CHHHHHHHHHHHHHHHHHhC
Confidence 0113677888888986653 222 22357999877666 58899999999999887654
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.013 Score=66.79 Aligned_cols=141 Identities=15% Similarity=0.050 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
+....++.+.|++++.-+. .....|+++|||||-.|++.||... .+ +-++..+..-
T Consensus 82 ~~~~~~la~~l~~~~p~~~--------~~~v~f~~SGseA~e~AlklAr~~t-gr---------------~~ii~~~~~y 137 (425)
T PRK07495 82 YENYVRLAERLNALVPGDF--------AKKTIFVTTGAEAVENAVKIARAAT-GR---------------SAVIAFGGGF 137 (425)
T ss_pred CHHHHHHHHHHHHhCCCCC--------CCEEEECCchHHHHHHHHHHHHHhh-CC---------------CeEEEECCCc
Confidence 3445556777777764211 0246899999999999999998752 11 1134444444
Q ss_pred chhHHHHHHhCC-------------CceEEEecCCC-Cccc----HHHHHHHHHHhhhcCCCceEEEEeeccCCcccc--
Q psy13453 641 NSSVEKSAIIGD-------------VPVRQLRSDDN-GVLR----GDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF-- 700 (764)
Q Consensus 641 H~Sv~kAa~~lG-------------l~v~~Vp~d~~-g~md----~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai-- 700 (764)
|=...-+..+.| -++..+|...+ ..++ .++|++.++... .+..+.+|+..--..+.|.+
T Consensus 138 HG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~-~~~~iaavi~EPv~g~~G~~~~ 216 (425)
T PRK07495 138 HGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKADV-DPQRVAAIIIEPVQGEGGFYPA 216 (425)
T ss_pred CCccHHHhhhcCCCcccccCCCCCCCCeEEecCCcccccccHHHHHHHHHHHHHhcc-CCCceEEEEECCccCCCCCccC
Confidence 533222222211 13455665321 1133 344465554311 12234455544333334544
Q ss_pred --ccHHHHHHHHHhcCCEEEEecccccc
Q psy13453 701 --DNLEELGPICQEYNIWLHVDAAYAGS 726 (764)
Q Consensus 701 --Dpl~eIa~i~~~~glwLHVDaA~Gg~ 726 (764)
+-+++|.++|++||++|++|-++.|+
T Consensus 217 ~~~~l~~l~~l~~~~g~llI~DEv~tG~ 244 (425)
T PRK07495 217 PAAFMKALRELCDQHGILLIADEVQTGF 244 (425)
T ss_pred CHHHHHHHHHHHHHcCCEEEEechhhcC
Confidence 35899999999999999999999874
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.01 Score=68.03 Aligned_cols=170 Identities=16% Similarity=0.077 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
..+.++.+.|++++. ..+ ....|+++|||||-.|++.||.....+ +.. .. +-+|.....-|
T Consensus 89 ~~~~~la~~l~~~~p--~~~-------~~v~f~~sGseA~e~AlklAr~~~~~~-g~~--------~r-~~ii~~~~~yH 149 (442)
T PRK13360 89 PKAFELANRIAEIAP--GGL-------NHVFFTNSGSESVDTALKIALAYHRAR-GEG--------SR-TRLIGRERGYH 149 (442)
T ss_pred HHHHHHHHHHHHhCC--CCC-------CEEEEeCCcHHHHHHHHHHHHHHHHhc-CCC--------CC-cEEEEEcCCcC
Confidence 445567777888762 111 236799999999999999999863211 000 00 11333444444
Q ss_pred hhHHHHHHhCC------------CceEEEecCCC---Cc----------ccHHHHHHHHHHhhhcCCCceEEEEeeccCC
Q psy13453 642 SSVEKSAIIGD------------VPVRQLRSDDN---GV----------LRGDALLTAVKEDLAKGLIPCCLIATLGTTG 696 (764)
Q Consensus 642 ~Sv~kAa~~lG------------l~v~~Vp~d~~---g~----------md~~~Le~~I~~~~~~G~~p~~VvataGTT~ 696 (764)
=.-.-+..+.| -.+..+|...+ .. -..++|++.++.. .+..+.+|+.---...
T Consensus 150 G~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~aavivEpi~g~ 227 (442)
T PRK13360 150 GVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLVTLH--DASTIAAVIVEPVAGS 227 (442)
T ss_pred CccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHHHHHHHHhc--CCCcEEEEEEccccCC
Confidence 33222222211 12444554311 00 1256788877532 1223445554444445
Q ss_pred cccccc----HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCC
Q psy13453 697 TCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLL 755 (764)
Q Consensus 697 ~GaiDp----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~ 755 (764)
.|.+-| +++|+++|++||+.|++|-++.|+-....-+.....|+ ..|-+++ -|.++
T Consensus 228 ~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv-~PDivt~--gK~l~ 287 (442)
T PRK13360 228 TGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGV-TPDLLTC--AKGLT 287 (442)
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCC-CCceeee--eeccc
Confidence 577777 99999999999999999999865422221122222355 4675544 67764
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.009 Score=66.44 Aligned_cols=215 Identities=12% Similarity=0.070 Sum_probs=123.1
Q ss_pred eeeHHHHHhhcCCCCCCeEEecCCC---CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccC---chhhhc----
Q psy13453 21 IYESFKATHSLSGTPDQVRLSGLPD---SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQS---LNAPVS---- 90 (764)
Q Consensus 21 ~YSv~KAa~~LGl~~~~v~~Vpvd~---~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDp---i~~ia~---- 90 (764)
+.++..+++.+|+.. +.||++. ++.+|+++|++.+++. +-+++-+.++-++|.+=+ ++++++
T Consensus 118 y~~~~~~~~~~g~~~---~~v~~~~~~~~~~~d~~~l~~~~~~~-----~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~ 189 (382)
T PRK06108 118 WPNLVAAPKILGARV---VCVPLDFGGGGWTLDLDRLLAAITPR-----TRALFINSPNNPTGWTASRDDLRAILAHCRR 189 (382)
T ss_pred ccchHHHHHHCCCEE---EEeeCCCCCCCccCCHHHHHHhcCcc-----ceEEEEECCCCCCCcccCHHHHHHHHHHHHH
Confidence 346677889999877 8999973 4679999999988642 224555678889997644 455554
Q ss_pred -CCCceeccccccc-c------ceee-eec-CCCc-cccccccccc---------------------cCCcccCCCCccc
Q psy13453 91 -NGPLKVGGVLRRV-Y------SSCL-VPR-GQKS-LRTTVLFHFL---------------------FQHWQIPLGRRFR 138 (764)
Q Consensus 91 -~~wlHVDa~l~~~-y------~s~l-l~r-d~~~-l~~~~s~~~d---------------------~~d~tle~SRr~~ 138 (764)
++|+.+|.+.... | .+++ +.. +... .-.+|+-.+. +..++.. ...
T Consensus 190 ~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~~~~~~~~~~~~~~---~~~ 266 (382)
T PRK06108 190 HGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVAPPALGQVLEKLIEYNTS---CVA 266 (382)
T ss_pred CCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcccceeeeeCCHHHHHHHHHHHHhccc---CCC
Confidence 8899999753111 0 0100 000 0000 0001110000 0011111 112
Q ss_pred HHHHHHHHHH--ccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEE-EeeccccccccccccCccCCccHH
Q psy13453 139 ALKLWMTLRS--YGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCF-RLKVRFWDKLDNLFGTISFGDNDL 215 (764)
Q Consensus 139 ALklWatL~~--lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~F-ry~P~~~~~~~~~~~~~~~~~d~~ 215 (764)
.+...++... -|.+-++++.++..+..+++.+.+++.+++++. .|+-+..+| ++. . ..+
T Consensus 267 ~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~p~~g~~~~~~l~-~--------------~~~-- 328 (382)
T PRK06108 267 QFVQRAAVAALDEGEDFVAELVARLRRSRDHLVDALRALPGVEVA-KPDGAMYAFFRIP-G--------------VTD-- 328 (382)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhCCCCccc-CCCeeEEEEEeCC-C--------------CCC--
Confidence 2222222222 255556777888888888999999988888865 455554444 332 1 011
Q ss_pred HHHHHHHHH-hcCcEEEEecee--CCeeEEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13453 216 NKAVYDRII-ARKVIYIVKGSF--QDRLFMRFAICSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 216 n~~L~~~L~-~~G~~~vs~t~l--~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~ 267 (764)
..++.++|. +.|........+ .+..++|+++.. +++++++.++.|+++.
T Consensus 329 ~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~---~~~~l~~~l~~l~~~l 380 (382)
T PRK06108 329 SLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR---DPARLDEAVERLRRFL 380 (382)
T ss_pred HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC---CHHHHHHHHHHHHHHH
Confidence 246777775 467755433322 235789998886 7889999998887653
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0035 Score=69.22 Aligned_cols=210 Identities=10% Similarity=0.051 Sum_probs=117.1
Q ss_pred eeH-HHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCce
Q psy13453 22 YES-FKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLK 95 (764)
Q Consensus 22 YSv-~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlH 95 (764)
|+. ..+++..|+.. +.+|.++++.+|+++|++++... +-+++-+.+..++|.+-|++++.+ +++++
T Consensus 121 y~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~l~~~~~~~-----~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~li 192 (361)
T PRK00950 121 FSYYEISAKAHGAKP---VYAKREEDFSLDVDSVLNAITEK-----TKVIFLCTPNNPTGNLIPEEDIRKILESTDALVF 192 (361)
T ss_pred hHHHHHHHHHcCCEE---EEeecCCCCCcCHHHHHHHhccC-----CCEEEEeCCCCCCCCCcCHHHHHHHHHHCCcEEE
Confidence 544 45788888877 88998888899999999988542 235555678999999999888765 78899
Q ss_pred ecccccccc----ce-------eeeec-CCCccc-cccccccccCCc-------ccCCCCcccHHHHHHHHHHccHHH-H
Q psy13453 96 VGGVLRRVY----SS-------CLVPR-GQKSLR-TTVLFHFLFQHW-------QIPLGRRFRALKLWMTLRSYGLKG-L 154 (764)
Q Consensus 96 VDa~l~~~y----~s-------~ll~r-d~~~l~-~~~s~~~d~~d~-------tle~SRr~~ALklWatL~~lG~eG-y 154 (764)
+|....... .+ ++..+ -.+.+- .-+...+-.... .....-....+..++++..+-..+ +
T Consensus 193 ~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~ 272 (361)
T PRK00950 193 VDEAYVEFAEYDYTPLALEYDNLIIGRTFSKVFGLAGLRIGYGFVPEWLIDYYMRAKTPFSLTRLSQAAAIAALSDKEYI 272 (361)
T ss_pred EECchhhhCccchHHHHHhcCCEEEEEeehHhhcCchhhcchhcCCHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHHH
Confidence 999652111 00 11100 000000 000000000000 000000123445555555554444 3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEec
Q psy13453 155 QAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKG 234 (764)
Q Consensus 155 ~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t 234 (764)
.+..++..+..+++.+.++ +.+ .++..+.+.++.. ..+ ..++.++|.+.|.......
T Consensus 273 ~~~~~~~~~~r~~l~~~l~----~~~-~~~~~~~i~~~~~----------------~~~--~~~~~~~l~~~gv~v~~~~ 329 (361)
T PRK00950 273 EKSIEHGIKSREYLYNELP----FKV-YPSEANFVLVDVT----------------PMT--AKEFCEELLKRGVIVRDCT 329 (361)
T ss_pred HHHHHHHHHHHHHHHhhcC----eeE-CCCcceEEEEECC----------------CCC--HHHHHHHHHHCCEEEeeCC
Confidence 4444444444455555544 454 3445554545431 111 2477888888887554433
Q ss_pred ee--CCeeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 235 SF--QDRLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 235 ~l--~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
.+ .+..++|+++. +.++++.+++.|+++
T Consensus 330 ~f~~~~~~~lRis~~----~~~~~~~l~~~L~~i 359 (361)
T PRK00950 330 SFRGLGDYYIRVSIG----TFEENERFLEILKEI 359 (361)
T ss_pred ccCCCCCCeEEEECC----CHHHHHHHHHHHHHH
Confidence 33 23568999876 567899999998775
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0047 Score=68.05 Aligned_cols=217 Identities=10% Similarity=0.037 Sum_probs=132.5
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCC--CCCcccHHHHHHHHHHHhhCCC-CcEEEEeeCCccccccc---Cchhhhc---
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLP--DSEWLAYLTLRTIYESFRKSFL-CPMCSGYCGRTLHQDIQ---SLNAPVS--- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd--~~~rmD~~aLe~~I~~~~~~G~-~p~~VatAGTT~~G~iD---pi~~ia~--- 90 (764)
.+.++..+++.+|+.. +.+|++ +++.+|+++|++.+++...++. ..+++-+-+.-++|..= .+.++++
T Consensus 102 ~y~~~~~~~~~~g~~~---~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~ 178 (363)
T PF00155_consen 102 CYPSYIEAARLLGAEV---IPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAR 178 (363)
T ss_dssp SSTHHHHHHHHTTSEE---EEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHH
T ss_pred ccccccccccccCcee---eeccccccccccccccccccccccccccccccceeeecccccccccccccccccchhhhhc
Confidence 3466888999999987 888875 7889999999999998766553 33555677888999874 4444532
Q ss_pred --CCCceeccccccc-cc---------------eeeeec-CCCcc--cc---cccc-ccc----cCCc-ccCCCCcccHH
Q psy13453 91 --NGPLKVGGVLRRV-YS---------------SCLVPR-GQKSL--RT---TVLF-HFL----FQHW-QIPLGRRFRAL 140 (764)
Q Consensus 91 --~~wlHVDa~l~~~-y~---------------s~ll~r-d~~~l--~~---~~s~-~~d----~~d~-tle~SRr~~AL 140 (764)
++|+=+|-..... +. .++..+ -.+.+ .+ .+-. ..+ +..+ ..-++ .++
T Consensus 179 ~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRvG~i~~~~~~~~~l~~~~~~~~~---~~~ 255 (363)
T PF00155_consen 179 EYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRVGYIVAPPELIERLRRFQRSGLS---SSP 255 (363)
T ss_dssp HTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSGGGTEEEEEEEHHHHHHHHHHHHHTTS---SHH
T ss_pred ccccceeeeeceeccccCCCccCcccccccccccceeeeeccccccccccccccccchhhhhhhhhhccccccc---cch
Confidence 7777666643111 00 011111 01100 00 0000 000 0000 00011 333
Q ss_pred HHHHHHHHccHH-----HHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHH
Q psy13453 141 KLWMTLRSYGLK-----GLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDL 215 (764)
Q Consensus 141 klWatL~~lG~e-----Gy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~ 215 (764)
...++...+... -++++.++..+..+++.+.+++. ++.+..++ .+.++|.-.+ .+ -
T Consensus 256 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-~~~~~~~~-~~~~~~~~~~----------------~~-~ 316 (363)
T PF00155_consen 256 MQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEI-GITVLPPE-AGFFLWVRLD----------------PN-D 316 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSEEEHHS-BSSEEEEEES----------------HH-H
T ss_pred hhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHh-hhheeecc-CccEEEEEcc----------------cc-h
Confidence 333333333333 45777788888899999999887 99987666 7777774321 01 2
Q ss_pred HHHHHHHHHhc-CcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHH
Q psy13453 216 NKAVYDRIIAR-KVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEI 263 (764)
Q Consensus 216 n~~L~~~L~~~-G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l 263 (764)
..++.++|.++ |...........+.++|+++ ...++++++.+++.|
T Consensus 317 ~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~--a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 317 AEELAQELLEEYGILVRPGSYFGVPGYIRISL--ASHSEEDLEEALERL 363 (363)
T ss_dssp HHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEG--GCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCEEEEecCCCCCCCEEEEEe--ccCCHHHHHHHHhhC
Confidence 36788889988 98766654444467899987 667899999998865
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.012 Score=66.45 Aligned_cols=220 Identities=8% Similarity=0.001 Sum_probs=128.6
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCc
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPL 94 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wl 94 (764)
.|.|+.-++...|... +.++. .|++.|++.++... ..++-+++......++|.+-|++++.+ ++++
T Consensus 141 ~h~s~~~~~~~~~~~~---~~~~~-----~d~~~le~~l~~~~-~~~~~~v~~~~v~s~~G~~~~l~~i~~l~~~~~~~l 211 (407)
T PRK09064 141 NHASMIEGIRRSRCEK---HIFRH-----NDVAHLEELLAAAD-PDRPKLIAFESVYSMDGDIAPIAEICDLADKYNALT 211 (407)
T ss_pred chHHHHHHHHHcCCcE---EEECC-----CCHHHHHHHHHhcc-CCCCeEEEEeCCCCCCccccCHHHHHHHHHHcCCEE
Confidence 5788888888877654 55553 37889999887531 112224455567788999999999876 8899
Q ss_pred eecccccc-cc---ceeee-----ecCCCcccccccc------cc-----c-------c-CCcccCCCC-cccHHHHHHH
Q psy13453 95 KVGGVLRR-VY---SSCLV-----PRGQKSLRTTVLF------HF-----L-------F-QHWQIPLGR-RFRALKLWMT 145 (764)
Q Consensus 95 HVDa~l~~-~y---~s~ll-----~rd~~~l~~~~s~------~~-----d-------~-~d~tle~SR-r~~ALklWat 145 (764)
.||.++.. .| +..+. ..+......+|+= .+ + + ..+....+. ...+..+.++
T Consensus 212 ivDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~GG~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~~aa~~a 291 (407)
T PRK09064 212 YLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFGVMGGYIAGSAALVDAVRSYAPGFIFTTSLPPAIAAAALAS 291 (407)
T ss_pred EEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhhccCceEecCHHHHHHHHHhCccccccCcCCHHHHHHHHHH
Confidence 99997531 11 11110 0011111111110 00 0 0 111212222 2233445666
Q ss_pred HHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHh
Q psy13453 146 LRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIA 225 (764)
Q Consensus 146 L~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~ 225 (764)
+..+-.. ....++..+++++|.+.+++. +++++. +..+++.|... .+....++.++|.+
T Consensus 292 l~~~~~~--~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~iv~i~~~-----------------~~~~~~~l~~~L~~ 350 (407)
T PRK09064 292 IRHLKES--NEERERHQERAAKLKAALDAA-GIPVMP-NESHIVPVMVG-----------------DPEKCKKASDMLLE 350 (407)
T ss_pred HHHHhcC--HHHHHHHHHHHHHHHHHHHHc-CCCCCC-CCCCEEEEEeC-----------------CHHHHHHHHHHHHH
Confidence 6665443 334577888999999999985 677654 45666666541 11123578888875
Q ss_pred c-CcEEEEec--ee-CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 226 R-KVIYIVKG--SF-QDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 226 ~-G~~~vs~t--~l-~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
+ |.+..... .. .+...+|+++. ...++++++.+++.|+++.+++
T Consensus 351 ~~gi~v~~~~~p~~~~~~~~lRis~~-~~~t~edi~~l~~~l~~~~~~~ 398 (407)
T PRK09064 351 EHGIYVQPINYPTVPRGTERLRITPT-PFHTDEMIDHLVEALVEVWARL 398 (407)
T ss_pred hCCEEEeeECCCCCCCCCceEEEEeC-CCCCHHHHHHHHHHHHHHHHHc
Confidence 4 76543321 11 24467999744 4557899999999999887553
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.01 Score=67.73 Aligned_cols=226 Identities=6% Similarity=-0.074 Sum_probs=126.8
Q ss_pred HHHHHhhcCCCCCCeEEecCC--CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccC---chhhhc-----CCC
Q psy13453 24 SFKATHSLSGTPDQVRLSGLP--DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQS---LNAPVS-----NGP 93 (764)
Q Consensus 24 v~KAa~~LGl~~~~v~~Vpvd--~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDp---i~~ia~-----~~w 93 (764)
...++.+.|+.. +.+++. +++.+|+++|++.+++. +..++-+-++-++|.+-| ++++.+ +++
T Consensus 154 y~~~~~~~g~~~---~~~~~~~~~~~~~d~~~l~~~~~~~-----~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ 225 (430)
T PLN00145 154 YEARAVFSGLEV---RHFDLLPERGWEVDLEGVEALADEN-----TVAMVIINPNNPCGSVYSYEHLAKIAETARKLGIL 225 (430)
T ss_pred HHHHHHHcCCEE---EEeeCCcccCCcCCHHHHHHHhCcC-----ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCE
Confidence 456788889877 888774 46899999999988753 335566668899999988 555543 889
Q ss_pred ceeccccccc-cc-----eeeeecCC-C-ccccccccccccCCccc-------------------------CCCCcccHH
Q psy13453 94 LKVGGVLRRV-YS-----SCLVPRGQ-K-SLRTTVLFHFLFQHWQI-------------------------PLGRRFRAL 140 (764)
Q Consensus 94 lHVDa~l~~~-y~-----s~ll~rd~-~-~l~~~~s~~~d~~d~tl-------------------------e~SRr~~AL 140 (764)
+.+|...... |. ++....+. . ..-.+||=.+....|-+ ..+-....+
T Consensus 226 ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG~RlG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (430)
T PLN00145 226 VIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPGWRLGWIATCDPNGILKETKVVDSIRNYLNISTDPATF 305 (430)
T ss_pred EEEeccchhhccCCCCccchhhhcccCcEEEEeccccccCCCCeeEEEEEEecchhhhhhhHHHHHHHHHhcccCCCCHH
Confidence 9999853211 11 10000000 0 00000110000000000 000011223
Q ss_pred HHHHHHHHc--c-HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHH
Q psy13453 141 KLWMTLRSY--G-LKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNK 217 (764)
Q Consensus 141 klWatL~~l--G-~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~ 217 (764)
..++....+ + .+-++++++..-+..+++.+.|++++++.....|+-....|--.|.... .+.. -..
T Consensus 306 ~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~P~ga~y~~v~l~~~~~----------~~~~-~~~ 374 (430)
T PLN00145 306 VQGAIPQIIANTKEEFFTKTLGLLKETADICYEKIKEIKCITCPHKPEGSMFVMVKLDLSCL----------SGIK-DDM 374 (430)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCCCeeeEEEeccChhhc----------CCCC-CHH
Confidence 334433333 2 3345666777777788899999998888766667666555422221000 0110 013
Q ss_pred HHHH-HHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy13453 218 AVYD-RIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVL 271 (764)
Q Consensus 218 ~L~~-~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~ 271 (764)
++.. .+.+.|.++.-.+.+....++|++++. ..+.++..++.|.++.++..
T Consensus 375 ~~~~~ll~~~gV~v~pG~~fg~~~~lRis~~~---~~~~l~~al~rl~~~~~~~~ 426 (430)
T PLN00145 375 DFCCKLAKEESVVVLPGSALGMKNWLRITFAI---DPPSLEDGLERLKSFCLRHA 426 (430)
T ss_pred HHHHHHHHhCCEEEeCccccCCCCeEEEEeCC---CHHHHHHHHHHHHHHHHHhc
Confidence 4444 444567766555555556899999884 57888888888888776543
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.012 Score=67.54 Aligned_cols=144 Identities=15% Similarity=0.033 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
..+.++.+.|++++..+- ....|+.+|||||-.|++.||.....+ +.. .. +-+|.....-|
T Consensus 92 ~~~~~la~~L~~~~p~~~---------~~v~f~~sGseAve~AlklAr~~~~~~-g~~--------~r-~~ii~~~~~yH 152 (445)
T PRK09221 92 PLAFELAERLAELAPGGL---------DHVFFTNSGSESVDTALKIALAYHRAR-GQG--------TR-TRLIGRERGYH 152 (445)
T ss_pred HHHHHHHHHHHHhCCCCC---------CEEEEeCCcHHHHHHHHHHHHHHHHhc-CCC--------CC-cEEEEECCCcC
Confidence 344556777777763211 246899999999999999999864321 100 01 12344444455
Q ss_pred hhHHHHHHhCC------------CceEEEecCC---C--C--------cccHHHHHHHHHHhhhcCCCceEEEEeeccCC
Q psy13453 642 SSVEKSAIIGD------------VPVRQLRSDD---N--G--------VLRGDALLTAVKEDLAKGLIPCCLIATLGTTG 696 (764)
Q Consensus 642 ~Sv~kAa~~lG------------l~v~~Vp~d~---~--g--------~md~~~Le~~I~~~~~~G~~p~~VvataGTT~ 696 (764)
=...-+..+.| ..+..+|... . + .-..++|++.++... ...+.+|+.---...
T Consensus 153 G~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~--~~~iAavi~Epv~g~ 230 (445)
T PRK09221 153 GVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVALHD--ASTIAAVIVEPMAGS 230 (445)
T ss_pred ccchhhhccCCChhhhhccCCCCCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHHHhcC--CCcEEEEEEecccCC
Confidence 33222222211 1234444321 0 0 012457777775321 123556665555556
Q ss_pred cccccc----HHHHHHHHHhcCCEEEEecccccc
Q psy13453 697 TCAFDN----LEELGPICQEYNIWLHVDAAYAGS 726 (764)
Q Consensus 697 ~GaiDp----l~eIa~i~~~~glwLHVDaA~Gg~ 726 (764)
.|.+-| +++|.++|++||+.|++|-++.|+
T Consensus 231 ~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~ 264 (445)
T PRK09221 231 AGVLVPPKGYLQRLREICDKHGILLIFDEVITGF 264 (445)
T ss_pred CCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCC
Confidence 688888 999999999999999999998664
|
|
| >KOG1368|consensus | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0019 Score=68.52 Aligned_cols=197 Identities=12% Similarity=0.101 Sum_probs=120.2
Q ss_pred EEecCCCCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcc---cccccCchhhhc--------CCCceeccc-------
Q psy13453 39 RLSGLPDSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTL---HQDIQSLNAPVS--------NGPLKVGGV------- 99 (764)
Q Consensus 39 ~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~---~G~iDpi~~ia~--------~~wlHVDa~------- 99 (764)
+.|...+++.||++++|++|....-.---|.- .-..=+|- -|.+=||+++.. ++.+|.||+
T Consensus 124 ~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAav 203 (384)
T KOG1368|consen 124 RTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAV 203 (384)
T ss_pred EeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHH
Confidence 77777789999999999999842200011111 11122222 247777777543 888999993
Q ss_pred -c----------------------ccccceeeeecCCCccccccccccccCCcccCCCCcccHHHHHHHHHHccHHHHHH
Q psy13453 100 -L----------------------RRVYSSCLVPRGQKSLRTTVLFHFLFQHWQIPLGRRFRALKLWMTLRSYGLKGLQA 156 (764)
Q Consensus 100 -l----------------------~~~y~s~ll~rd~~~l~~~~s~~~d~~d~tle~SRr~~ALklWatL~~lG~eGy~~ 156 (764)
+ ..|-+|++ +..++....+ -....++.|+-|-..+-.-++|-.+- +.+ .
T Consensus 204 asgV~vk~i~~~fDSVsiCLSKglgAPVGSVi-VG~k~FI~kA-----~~~RKalGGGmRQsGvLaaaaLval~-~~~-~ 275 (384)
T KOG1368|consen 204 ASGVPVKKICSAFDSVSICLSKGLGAPVGSVI-VGSKDFIDKA-----RHFRKALGGGMRQSGVLAAAALVALD-ENV-P 275 (384)
T ss_pred HcCCCHHHHHHhhhhhhhhhhccCCCCcccEE-EccHHHHHHH-----HHHHHHhcCchhHHHHHHHHHHHHhh-cch-H
Confidence 1 11122222 2222111111 01233555655444443334443332 122 2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEeCC-CCceeEEEEeeccccccccccccCccCCccHHH-HHHHHHHHhcCcEEEEec
Q psy13453 157 YLRKHISLAKKFADLVEQDDRFELVCP-PSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLN-KAVYDRIIARKVIYIVKG 234 (764)
Q Consensus 157 ~i~~~i~lA~~l~~~I~~~p~~ell~~-P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n-~~L~~~L~~~G~~~vs~t 234 (764)
.+++.-+.|+.+++.+.+.++|++-.+ .+.|+|..-.. ..+++ ..+.+.+.+.|...+...
T Consensus 276 ~L~~dHk~A~~lAe~~~~~~~i~v~v~a~etNiv~~~l~-----------------q~~~~~~~l~~~~~k~gi~lm~~~ 338 (384)
T KOG1368|consen 276 LLRADHKRAKELAEYINTPEEIRVEVPAVETNIVNMVLC-----------------QARLTAEELCKFLEKNGILLMGGA 338 (384)
T ss_pred HHHHHHHHHHHHHHHhccccceeeecchhhcceeeeecc-----------------cccCCHHHHHHHHHHCCeEEeecc
Confidence 566777888888889998888998776 77777776432 22344 689999999998777665
Q ss_pred eeCCeeEEEEeccCCCCCHHHHHHHHHHHHH
Q psy13453 235 SFQDRLFMRFAICSSQTEESDVQLGWNEIRT 265 (764)
Q Consensus 235 ~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~ 265 (764)
..+ +|+ +.|+.++.++++.++..+++
T Consensus 339 s~r----~Ri-vlh~Qvt~~~ve~~~~~~~k 364 (384)
T KOG1368|consen 339 SRR----IRI-VLHHQVTDEDVEYVKSVLSK 364 (384)
T ss_pred ccc----eEE-EEEEecCHHHHHHHHHHHHH
Confidence 554 888 68899999999999998853
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0088 Score=65.96 Aligned_cols=206 Identities=11% Similarity=0.026 Sum_probs=118.8
Q ss_pred HHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc----CCCceecccc
Q psy13453 25 FKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS----NGPLKVGGVL 100 (764)
Q Consensus 25 ~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~----~~wlHVDa~l 100 (764)
.++++.+|+.. +.||+++++.+|++++++ ++-+++-+-++.+||.+=|.+++.+ +.|+.+|.+.
T Consensus 110 ~~~~~~~G~~i---~~v~~~~~~~~d~~~l~~---------~~~~i~l~np~NPTG~~~~~~~l~~l~~~~~~iIvDe~y 177 (349)
T PRK07908 110 EAALRAAGIPV---HRVVLDPPFRLDPAAVPD---------DADLVVIGNPTNPTSVLHPAEQLLALRRPGRILVVDEAF 177 (349)
T ss_pred HHHHHHcCCEE---EeeccCcccCcChhHhcc---------CCCEEEEcCCCCCCCCCcCHHHHHHHHhcCCEEEEECcc
Confidence 46778889877 899999879999986632 1225555788999999988887664 6778888754
Q ss_pred cccc-c---e--------eeeecC-CCccc-cccccccccC---------CcccCCCCcccHHHHHHHHHH-ccHHHHHH
Q psy13453 101 RRVY-S---S--------CLVPRG-QKSLR-TTVLFHFLFQ---------HWQIPLGRRFRALKLWMTLRS-YGLKGLQA 156 (764)
Q Consensus 101 ~~~y-~---s--------~ll~rd-~~~l~-~~~s~~~d~~---------d~tle~SRr~~ALklWatL~~-lG~eGy~~ 156 (764)
...+ . + ++..+. .+.+- ..+...+-+. .....++-..........+.. .+.+-+++
T Consensus 178 ~~~~~~~~~~l~~~~~~~~i~i~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 257 (349)
T PRK07908 178 ADAVPGEPESLAGDDLPGVLVLRSLTKTWSLAGLRVGYALGAPDVLARLTRGRAHWPVGTLQLEAIAACCAPRAVAEAAA 257 (349)
T ss_pred hhhccCCccccccccCCCEEEEeecccccCCccceeeeeecCHHHHHHHHhcCCCCCccHHHHHHHHHHhcccchHHHHH
Confidence 2111 1 1 111110 00000 0000000000 000000001111122222221 23344566
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEecee
Q psy13453 157 YLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSF 236 (764)
Q Consensus 157 ~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l 236 (764)
+.++..+..+++.+.|+++ ++++..++..+.+.++.. + ...+.+.|.+.|..+......
T Consensus 258 ~~~~~~~~r~~l~~~L~~~-~~~~~~p~~g~~~~~~~~----------------~----~~~~~~~l~~~gI~v~~g~~f 316 (349)
T PRK07908 258 DAARLAADRAEMVAGLRAV-GARVVDPAAAPFVLVRVP----------------D----AELLRKRLRERGIAVRRGDTF 316 (349)
T ss_pred HHHHHHHHHHHHHHHHHhC-CcEeccCCCceEEEEECC----------------c----HHHHHHHHHhCCEEEEECCCC
Confidence 6777777888899999987 788776666666655432 1 246778888888866554443
Q ss_pred C--CeeEEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13453 237 Q--DRLFMRFAICSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 237 ~--g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~ 267 (764)
. +..++|+++. ++++++.+++.|+++.
T Consensus 317 ~~~~~~~vRis~~----~~~~~~~l~~al~~~~ 345 (349)
T PRK07908 317 PGLDPDYLRLAVR----PRAEVPVLVQALAEIL 345 (349)
T ss_pred CCCCCCeEEEEeC----CCccHHHHHHHHHHHH
Confidence 2 3579999984 4668888888887763
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.016 Score=66.47 Aligned_cols=176 Identities=15% Similarity=0.029 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
+....++.+.|++++..... ....|+.+|||||..|++.||... .+ +-+|.....-
T Consensus 98 ~~~~~~la~~l~~~~p~~~~--------~~v~f~~sGseA~e~AlklAr~~t-gr---------------~~ii~~~~~y 153 (443)
T PRK06058 98 YEGYVAVAEQLNRLTPGDHE--------KRSALFNSGAEAVENAVKIARSYT-GR---------------QAVVVFDHAY 153 (443)
T ss_pred CHHHHHHHHHHHHhCCCCCC--------CEEEEeCCcHHHHHHHHHHHHHhh-CC---------------CeEEEECCCc
Confidence 34555677788887743210 135789999999999999998752 11 1244555556
Q ss_pred chhHHHHHHhCCC-------------ceEEEecCCCCc------ccH-HHHHHHHHHhhh--cCCCceEEEEeeccCCcc
Q psy13453 641 NSSVEKSAIIGDV-------------PVRQLRSDDNGV------LRG-DALLTAVKEDLA--KGLIPCCLIATLGTTGTC 698 (764)
Q Consensus 641 H~Sv~kAa~~lGl-------------~v~~Vp~d~~g~------md~-~~Le~~I~~~~~--~G~~p~~VvataGTT~~G 698 (764)
|-...-+..+.+. .+..+|.....+ .+. +.+++.++...+ .+..+.+|+.---....|
T Consensus 154 HG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~gG 233 (443)
T PRK06058 154 HGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVGADNLAAVIIEPIQGEGG 233 (443)
T ss_pred CcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHHHHHHHHHHhhCCCceEEEEECCccCCCC
Confidence 6554444433221 234444321111 111 222222221111 123355555444333345
Q ss_pred cccc----HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 699 AFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 699 aiDp----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
.+-| +++|+++|++||+.|++|-.+.|+-..-..+....-|+ ..|-+++. |.++.-+..|++
T Consensus 234 ~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv-~PDiv~~g--K~l~~G~Pi~av 299 (443)
T PRK06058 234 FIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGI-VPDLITTA--KGIAGGLPLSAV 299 (443)
T ss_pred CcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCC-CCCEEEEc--ccccCCCccEEE
Confidence 5533 99999999999999999999887533222222223355 46888884 877654545554
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.023 Score=65.40 Aligned_cols=170 Identities=12% Similarity=0.052 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
..+.++.+.|+++++... ...|+.+|||||..|+++||.....+ +..+ ++-+|.....-|
T Consensus 89 ~~~~~lae~l~~~~~~~~----------~v~f~~sGseA~e~AlklAr~~t~~~-g~~~---------r~~ii~~~~~yH 148 (451)
T PRK07678 89 EPAIKLAEKLNEWLGGEY----------VIFFSNSGSEANETAFKIARQYHAQK-GEPH---------RYKFISRYRAYH 148 (451)
T ss_pred HHHHHHHHHHHHhCCCCC----------EEEEeCCcHHHHHHHHHHHHHHHHhc-CCCC---------CcEEEEECCCcC
Confidence 445567777777765422 36899999999999999999864221 1000 122333444445
Q ss_pred hhHHHHHHhCCC------------ceEEEecCCCCcc---------c---HHHHHHHHHHhhhcCCCceEEEEeeccCCc
Q psy13453 642 SSVEKSAIIGDV------------PVRQLRSDDNGVL---------R---GDALLTAVKEDLAKGLIPCCLIATLGTTGT 697 (764)
Q Consensus 642 ~Sv~kAa~~lGl------------~v~~Vp~d~~g~m---------d---~~~Le~~I~~~~~~G~~p~~VvataGTT~~ 697 (764)
=.-.-+....|. .+..+|.....+. | .+.+++.|+.. .+..+.+|++---....
T Consensus 149 G~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~iAAvi~EPiqg~g 226 (451)
T PRK07678 149 GNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWE--LSETIAAVIMEPIITGG 226 (451)
T ss_pred CccHHHhhcCCCcccccccCCCCCCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHhc--CCCceEEEEEccccCCC
Confidence 333333322211 2344443322221 1 23355556421 12345555554333345
Q ss_pred ccccc----HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCC
Q psy13453 698 CAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLV 756 (764)
Q Consensus 698 GaiDp----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~ 756 (764)
|.+-| +++++++|++||+.|++|-.+.|+-....-+....-|+ ..|-+++ -|.++.
T Consensus 227 G~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv-~PDivt~--gK~lgg 286 (451)
T PRK07678 227 GVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGV-KPDIITM--AKGITS 286 (451)
T ss_pred CcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhHHHHhcCC-CCCEEEe--eccccc
Confidence 66644 89999999999999999999876533221111112366 5787776 676553
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.003 Score=69.29 Aligned_cols=140 Identities=11% Similarity=-0.053 Sum_probs=91.8
Q ss_pred HHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHH
Q psy13453 566 LVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVE 645 (764)
Q Consensus 566 ~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~ 645 (764)
.+.+.+++.+|.+ ..++|+|++++....+. ..+ +..|++.+-+.....
T Consensus 53 ~Lr~~ia~~~~~~-----------~I~it~Gs~~al~~~~~-----~~~----------------gd~v~v~~P~y~~~~ 100 (330)
T PRK05664 53 GLEAAARAYYGAP-----------QLLPVAGSQAAIQALPR-----LRA----------------PGRVGVLSPCYAEHA 100 (330)
T ss_pred HHHHHHHHHhCCC-----------CEEECcCHHHHHHHHHH-----ccC----------------CCEEEEcCCChHHHH
Confidence 4466777777742 47889999998655421 111 124667777888888
Q ss_pred HHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc---HHHHHHHHHhcCCEEEEecc
Q psy13453 646 KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN---LEELGPICQEYNIWLHVDAA 722 (764)
Q Consensus 646 kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp---l~eIa~i~~~~glwLHVDaA 722 (764)
.+++.+|++++.||.+ ++++.+.+ +-+|+.+..++.||.+=+ +.+|+++|+++++|+.+|-+
T Consensus 101 ~~~~~~g~~~~~v~~~--------~~~~~~~~-------~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~ 165 (330)
T PRK05664 101 HAWRRAGHQVRELDEA--------EVEAALDS-------LDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEA 165 (330)
T ss_pred HHHHHcCCeEEEechh--------hHhhhhcC-------CCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECC
Confidence 8999999999999864 35555421 125666778899998855 66666778899999999999
Q ss_pred ccccccccchhhhhhcCCCccc--EEEEcCCccCCCC
Q psy13453 723 YAGSALLLPEYAHLKRGLEYVD--SFDFNTHKWLLVN 757 (764)
Q Consensus 723 ~Gg~~l~~~~~r~~l~gie~aD--Sit~d~HK~l~~P 757 (764)
|..+. ..+. +..+..-| -+.-++.|.++.|
T Consensus 166 y~~~~-~~~s----~~~~~~~~~vi~~~SfSK~~gl~ 197 (330)
T PRK05664 166 FMDNT-PQHS----LAACAHRPGLIVLRSFGKFFGLA 197 (330)
T ss_pred cccCC-Cccc----ccccccCCCEEEEeeccccccCC
Confidence 96432 1011 11111111 4577889988744
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.005 Score=68.60 Aligned_cols=127 Identities=16% Similarity=0.114 Sum_probs=92.6
Q ss_pred HHHHHHHHHcC-CCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhH
Q psy13453 566 LVMNWLGKALG-LPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV 644 (764)
Q Consensus 566 ~v~~~la~llG-~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv 644 (764)
++.+.+++.+| .+.+ ..+.+.|++|.+-..+.+.+. ++..++++.-+-..-
T Consensus 61 ~l~~a~a~~~~~~~~~---------~V~~gnGsde~i~~l~~~~~~-------------------~gd~vl~~~Ptf~~Y 112 (356)
T COG0079 61 ELRAALAEYYGVVDPE---------NVLVGNGSDELIELLVRAFVE-------------------PGDTVLIPEPTFSMY 112 (356)
T ss_pred HHHHHHHHHhCCCCcc---------eEEEcCChHHHHHHHHHHhhc-------------------CCCEEEEcCCChHHH
Confidence 44556677777 4432 344567777765444433221 112355666666666
Q ss_pred HHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhc--CCEEEEecc
Q psy13453 645 EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEY--NIWLHVDAA 722 (764)
Q Consensus 645 ~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~--glwLHVDaA 722 (764)
..+|...|..++.||.++ +++|++++.+++.++.+ +|+.+..++.||..-+.++|.++++.. +.++.||-|
T Consensus 113 ~~~a~~~g~~~~~v~~~~-~~~d~~~~~~~~~~~~~------lv~i~nPNNPTG~~~~~~~l~~l~~~~~~~~~vVvDEA 185 (356)
T COG0079 113 EIAAQLAGAEVVKVPLKE-FRLDLDAILAAIRDKTK------LVFLCNPNNPTGTLLPREELRALLEALPEGGLVVIDEA 185 (356)
T ss_pred HHHHHhcCCeEEEecccc-cccCHHHHHHhhhcCCC------EEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCc
Confidence 778899999999999988 99999999999987433 888999999999998888888887754 889999999
Q ss_pred ccccc
Q psy13453 723 YAGSA 727 (764)
Q Consensus 723 ~Gg~~ 727 (764)
|.=+.
T Consensus 186 Y~eF~ 190 (356)
T COG0079 186 YIEFS 190 (356)
T ss_pred hhhcC
Confidence 87643
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.013 Score=65.30 Aligned_cols=221 Identities=8% Similarity=-0.023 Sum_probs=119.2
Q ss_pred eeeHHHHHhhcCCCCCCeEEecCCC---CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccc---cCchhhhc----
Q psy13453 21 IYESFKATHSLSGTPDQVRLSGLPD---SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDI---QSLNAPVS---- 90 (764)
Q Consensus 21 ~YSv~KAa~~LGl~~~~v~~Vpvd~---~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~i---Dpi~~ia~---- 90 (764)
++...+++..+|... +.||++. ++++|+++|++.+.+. +-+++.+-++.++|.+ +++.++++
T Consensus 117 y~~~~~~~~~~g~~~---~~v~~~~~~~~~~~d~~~l~~~~~~~-----~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~ 188 (380)
T PRK06225 117 YLIIDNFASRFGAEV---IEVPIYSEECNYKLTPELVKENMDEN-----TRLIYLIDPLNPLGSSYTEEEIKEFAEIARD 188 (380)
T ss_pred CcchHHHHHHhCceE---EeeccccccCCccCCHHHHHhhcCCC-----ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHH
Confidence 345567888899876 8899852 4689999999988653 2244455677789986 45666665
Q ss_pred -CCCceeccccc-----ccc------ce-eeeecCCCccc-ccccccc-----c----cCCcccCCCCcccHHHH---HH
Q psy13453 91 -NGPLKVGGVLR-----RVY------SS-CLVPRGQKSLR-TTVLFHF-----L----FQHWQIPLGRRFRALKL---WM 144 (764)
Q Consensus 91 -~~wlHVDa~l~-----~~y------~s-~ll~rd~~~l~-~~~s~~~-----d----~~d~tle~SRr~~ALkl---Wa 144 (764)
++++.+|.... +.. .. +.+..-.+.+. ..+...+ + +.... ..+.+...+.. ..
T Consensus 189 ~~~~ii~De~y~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RiG~i~~~~~l~~~~~~~~-~~~~~~~~~~~~~a~~ 267 (380)
T PRK06225 189 NDAFLLHDCTYRDFAREHTLAAEYAPEHTVTSYSFSKIFGMAGLRIGAVVATPDLIEVVKSIV-INDLGTNVIAQEAAIA 267 (380)
T ss_pred CCcEEEEehhHHHHhccCCchhhcCCCCEEEEeechhhcCCccceeEEEecCHHHHHHHHHHH-hcccCCCHHHHHHHHH
Confidence 88888988531 000 00 00000011110 0000000 0 00000 01122223322 22
Q ss_pred HHHHccHHHHHHHHHHH-HHHHHHHHHHHhcCCCeEEe-CCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHH
Q psy13453 145 TLRSYGLKGLQAYLRKH-ISLAKKFADLVEQDDRFELV-CPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDR 222 (764)
Q Consensus 145 tL~~lG~eGy~~~i~~~-i~lA~~l~~~I~~~p~~ell-~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~ 222 (764)
.|.. . +.|.+.+++. -+..+.+.+.+++++++.+. .++.-+.+.+.+.+. +.+ ..++.++
T Consensus 268 ~l~~-~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~--------------~~~--~~~l~~~ 329 (380)
T PRK06225 268 GLKV-K-DEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGNMMVIDISEA--------------GID--PEDLVEY 329 (380)
T ss_pred HHhc-c-hHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCCCCeEEEEEcccc--------------cCC--HHHHHHH
Confidence 2222 1 3333444333 34466777888887776543 334444444443221 111 1467888
Q ss_pred HHhcCcEEEEece---eCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy13453 223 IIARKVIYIVKGS---FQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVL 271 (764)
Q Consensus 223 L~~~G~~~vs~t~---l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~ 271 (764)
|.+.|........ -.+..++|+++.. ++++++.+++.|+++.+++.
T Consensus 330 l~~~gi~v~~g~~~~~~~~~~~iR~s~~~---~~e~l~~~~~~l~~~~~~~~ 378 (380)
T PRK06225 330 LLERKIFVRQGTYTSKRFGDRYIRVSFSI---PREQVEVFCEEFPDVVETLR 378 (380)
T ss_pred HHHCCEEEcCCcccCcCCCCceEEEEeCC---CHHHHHHHHHHHHHHHHHhh
Confidence 8888875433211 1235689999764 58999999999999887664
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.024 Score=65.14 Aligned_cols=175 Identities=10% Similarity=-0.028 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
+..+.++.+.|+++++- ... ....|+++|||||-.|+++||...... +..+ ++-+|.....-
T Consensus 85 ~~~~~~lae~L~~~~~~-~~~-------~~v~f~~sGsEAve~AlklAr~~~~~~-g~~~---------r~~ii~~~~~y 146 (449)
T PRK07481 85 HPRAIELSYELIDMFAP-EGM-------RRVFFSSGGSDSVETALKLARQYWKVR-GQPE---------RTKFISLKQGY 146 (449)
T ss_pred CHHHHHHHHHHHHhcCC-CCC-------CEEEEcCchHHHHHHHHHHHHHHHHhc-CCCC---------CcEEEEECCCc
Confidence 34556677778887742 110 246899999999999999999864221 1000 12234444445
Q ss_pred chhHHHHHHhCC------------CceEEEecCCCCc-----ccHHHHHHHHHHh----h--hcCCCceEEEEeeccCCc
Q psy13453 641 NSSVEKSAIIGD------------VPVRQLRSDDNGV-----LRGDALLTAVKED----L--AKGLIPCCLIATLGTTGT 697 (764)
Q Consensus 641 H~Sv~kAa~~lG------------l~v~~Vp~d~~g~-----md~~~Le~~I~~~----~--~~G~~p~~VvataGTT~~ 697 (764)
|=.-.-+..+.| -.+..++.....+ -|++.+++.+.+. . ..+..+.+|++---....
T Consensus 147 HG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~g 226 (449)
T PRK07481 147 HGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAG 226 (449)
T ss_pred CCcchhhhccCCCcccccccCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCc
Confidence 533222222211 1234443321111 1444443332211 1 122345566655444445
Q ss_pred ccccc----HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCC
Q psy13453 698 CAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLV 756 (764)
Q Consensus 698 GaiDp----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~ 756 (764)
|.+-+ +++++++|++||+.|++|-.+.|+-....-+....-|+ ..|-+++ -|.++.
T Consensus 227 G~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv-~PDiv~~--gKgl~g 286 (449)
T PRK07481 227 GVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGV-KPDIMCL--AKGITS 286 (449)
T ss_pred CCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhhHhhhcCC-CCCEEEE--eecccC
Confidence 65544 99999999999999999999877533222112222355 4787776 566553
|
|
| >KOG0053|consensus | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0028 Score=70.69 Aligned_cols=99 Identities=15% Similarity=0.117 Sum_probs=79.2
Q ss_pred cchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEE
Q psy13453 640 SNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHV 719 (764)
Q Consensus 640 aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHV 719 (764)
+|.-+.+-...+|+....|.+++ ++.+++++++.+ -+|-.=..++.+..+-||++|+++|+++|+.+.|
T Consensus 129 T~~~l~~~~~~~gie~~~vd~~~-----~~~~~~~i~~~t------~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvV 197 (409)
T KOG0053|consen 129 TLRILRKFLPKFGGEGDFVDVDD-----LKKILKAIKENT------KAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVV 197 (409)
T ss_pred HHHHHHHHHHHhCceeeeechhh-----HHHHHHhhccCc------eEEEEECCCCCccccccHHHHHHHHhhCCCEEEE
Confidence 34445666667888888887764 777888887743 4888899999999999999999999999999999
Q ss_pred eccccccccccchhhhhhcCCCc-ccEEEEcCCccCCCC
Q psy13453 720 DAAYAGSALLLPEYAHLKRGLEY-VDSFDFNTHKWLLVN 757 (764)
Q Consensus 720 DaA~Gg~~l~~~~~r~~l~gie~-aDSit~d~HK~l~~P 757 (764)
|..+|+....- .+.. ||-++=+.-||++.-
T Consensus 198 DnTf~~p~~~~--------pL~lGADIV~hSaTKyi~Gh 228 (409)
T KOG0053|consen 198 DNTFGSPYNQD--------PLPLGADIVVHSATKYIGGH 228 (409)
T ss_pred eCCcCcccccC--------hhhcCCCEEEEeeeeeecCC
Confidence 99999963222 2334 899999999998753
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.017 Score=65.22 Aligned_cols=219 Identities=10% Similarity=-0.012 Sum_probs=117.8
Q ss_pred eeHHHHHhhcCCCCCCeEEecCC--CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccc---cCchhhhc-----C
Q psy13453 22 YESFKATHSLSGTPDQVRLSGLP--DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDI---QSLNAPVS-----N 91 (764)
Q Consensus 22 YSv~KAa~~LGl~~~~v~~Vpvd--~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~i---Dpi~~ia~-----~ 91 (764)
..+..++..+|+.. +.+|++ +++.+|+++|++++.++ +.+++-+.++.++|.+ ++++++.+ +
T Consensus 131 ~~~~~~~~~~g~~~---~~~~~~~~~~~~~d~~~l~~~~~~~-----~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~ 202 (403)
T TIGR01265 131 PLYDTRAAFSGLEV---RLYDLLPEKDWEIDLDGLEALADEK-----TVAIVVINPSNPCGSVFSRDHLQKIAEVARKLG 202 (403)
T ss_pred hhHHHHHHHcCCEE---EEecCCcccCCccCHHHHHHHhCcC-----ccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCC
Confidence 34567888899877 888885 36789999999988653 2344556678899988 44666654 8
Q ss_pred CCceeccccccc-cc-----eee-eecCCCc-cccccccccccCCcccCCCC----------------------------
Q psy13453 92 GPLKVGGVLRRV-YS-----SCL-VPRGQKS-LRTTVLFHFLFQHWQIPLGR---------------------------- 135 (764)
Q Consensus 92 ~wlHVDa~l~~~-y~-----s~l-l~rd~~~-l~~~~s~~~d~~d~tle~SR---------------------------- 135 (764)
+|+++|...... |. ++. +..+... .-.+||-. |.+.|-|
T Consensus 203 ~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~-----~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~~~ 277 (403)
T TIGR01265 203 IPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKR-----WVVPGWRLGWIIIHDPHGIFRDTVLQGLKNLLQRI 277 (403)
T ss_pred CEEEEEccccccccCCCCccchhhhccCCcEEEEeecccc-----cCCCcceEEEEEEeCchhhhHHHHHHHHHHHhhhh
Confidence 899999964211 11 100 0000000 00011100 1111111
Q ss_pred -cccHHHHHHHHHHc--cHHHH-HHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEE-EEeeccccccccccccCccC
Q psy13453 136 -RFRALKLWMTLRSY--GLKGL-QAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVC-FRLKVRFWDKLDNLFGTISF 210 (764)
Q Consensus 136 -r~~ALklWatL~~l--G~eGy-~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~-Fry~P~~~~~~~~~~~~~~~ 210 (764)
....+..-+....+ +.++| ++..++..+..+++.+.|++++++.+.. |+-+... ++.. .... ..
T Consensus 278 ~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-p~~g~f~~~~~~-~~~~---------~~ 346 (403)
T TIGR01265 278 LGPATIVQGALPDILENTPQEFFDGKISVLKSNAELCYEELKDIPGLVCPK-PEGAMYLMVKLE-LELF---------PE 346 (403)
T ss_pred cCCChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCCceecC-CCceeEEEEecc-cccc---------CC
Confidence 11112111111111 33343 3445556666778888998887876443 4434333 3322 1100 00
Q ss_pred CccHHHHHHHHHH-HhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 211 GDNDLNKAVYDRI-IARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 211 ~~d~~n~~L~~~L-~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
..+ ..++.++| .+.|..+..........++|+++..+ ++.+++.++.|.++.++
T Consensus 347 ~~~--~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis~~~~---~~~l~~~l~~l~~~~~~ 401 (403)
T TIGR01265 347 IKD--DVDFCEKLVREESVICLPGSAFGLPNWVRITITVP---ESMLEEACSRIKEFCER 401 (403)
T ss_pred CCC--HHHHHHHHHHhCCEEEeCccccCCCCeEEEEecCC---HHHHHHHHHHHHHHHHh
Confidence 001 24566665 45687665444444467899999864 66788887777766543
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.038 Score=63.75 Aligned_cols=184 Identities=12% Similarity=-0.024 Sum_probs=99.6
Q ss_pred CchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhc--------cCCCC-Cccc-
Q psy13453 557 SPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQ--------SKNPS-LTEN- 626 (764)
Q Consensus 557 sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~--------~~~~~-~~~~- 626 (764)
.+....+.+.+.+.+++++. ... ....|+++|||||-.|++.||.......+ +++.+ ++..
T Consensus 100 ~~~~~~la~~l~~~l~~~~p--~~~-------~~v~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~ 170 (464)
T TIGR00699 100 NFPSKDWAKILKEGILKVAP--KGQ-------DQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQA 170 (464)
T ss_pred cHHHHHHHHHHHHhHHhhCC--CCc-------CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccc
Confidence 33444555555555555652 110 24689999999999999999976421100 00000 0000
Q ss_pred cccC-ceEEEecCCcchhHHHHHHhCCC-----------ceEEEecCC-CC-------------cccHHHHHHHHHHhhh
Q psy13453 627 DIRN-KLVAYTSDQSNSSVEKSAIIGDV-----------PVRQLRSDD-NG-------------VLRGDALLTAVKEDLA 680 (764)
Q Consensus 627 ~~~~-~~vi~~S~~aH~Sv~kAa~~lGl-----------~v~~Vp~d~-~g-------------~md~~~Le~~I~~~~~ 680 (764)
...+ .-+|.....-|=...-+..+.|- .+..+|... .. .-+++.|++.|++.
T Consensus 171 ~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~-- 248 (464)
T TIGR00699 171 PGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKW-- 248 (464)
T ss_pred cCCcCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHhc--
Confidence 0011 13555566667555555444332 122333221 00 01356677777532
Q ss_pred cCCCceEEEEeeccCCcccccc----HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCC-cccEEEEcCCccC
Q psy13453 681 KGLIPCCLIATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLE-YVDSFDFNTHKWL 754 (764)
Q Consensus 681 ~G~~p~~VvataGTT~~GaiDp----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie-~aDSit~d~HK~l 754 (764)
+....+|++---....|.+-+ +++|+++|++||+.|++|-.+.|+-....-+....-|++ +.|-+++ -|.+
T Consensus 249 -~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PDi~t~--gK~l 324 (464)
T TIGR00699 249 -HKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDMVTF--SKKF 324 (464)
T ss_pred -CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCCEEEe--hhhh
Confidence 223556665544455577777 999999999999999999998765322211122223554 5777665 5655
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0036 Score=66.48 Aligned_cols=187 Identities=13% Similarity=0.076 Sum_probs=110.7
Q ss_pred HHHHHHHHh-hcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhh
Q psy13453 538 IVGDMLSGA-FGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHW 616 (764)
Q Consensus 538 ~lad~l~~~-lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~ 616 (764)
..++++++. +-.+...|+....-+.+-..+..++.+-+||.-+- -...+|.|+..+-++....- ...
T Consensus 53 ~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~ygwnit~-------~NIalTnGSQs~fFYlfNlF-----~G~ 120 (417)
T COG3977 53 LLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYGWNITA-------QNIALTNGSQSAFFYLFNLF-----AGR 120 (417)
T ss_pred HHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhCCCCcc-------ceeeecCCccchHHHHHHHh-----cCc
Confidence 456666665 44556777777777888889999999999997642 34667887777766654421 111
Q ss_pred ccCCCCCccccccCceEEEecCCcchhHHHHHHhCCC------------ceEEEecC-CCCcccHHHHHHHHHHhhhcCC
Q psy13453 617 QSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDV------------PVRQLRSD-DNGVLRGDALLTAVKEDLAKGL 683 (764)
Q Consensus 617 ~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl------------~v~~Vp~d-~~g~md~~~Le~~I~~~~~~G~ 683 (764)
..+ +..++ |+.+=.-.|- .+.++ ++..+|.. -..+.|.++|+- .+.
T Consensus 121 ~sd-------G~~k~--illPLaPeYi-----GY~d~~l~~d~fVs~kP~iel~~~g~FKY~vDF~~l~i--~e~----- 179 (417)
T COG3977 121 RSD-------GTEKK--ILLPLAPEYI-----GYADAGLEEDLFVSAKPNIELLPAGQFKYHVDFEHLHI--GES----- 179 (417)
T ss_pred cCC-------Cccee--EeeccChhhc-----cccccccCccceeeccCCcccccccceeeccCHHHccc--ccc-----
Confidence 111 11111 1111110000 01111 11222211 245678888763 233
Q ss_pred CceEEEEeeccCCcccc---ccHHHHHHHHHhcCCEEEEeccccccc---cccchhhhhh-cCCCcccEEEEcCCccCCC
Q psy13453 684 IPCCLIATLGTTGTCAF---DNLEELGPICQEYNIWLHVDAAYAGSA---LLLPEYAHLK-RGLEYVDSFDFNTHKWLLV 756 (764)
Q Consensus 684 ~p~~VvataGTT~~Gai---Dpl~eIa~i~~~~glwLHVDaA~Gg~~---l~~~~~r~~l-~gie~aDSit~d~HK~l~~ 756 (764)
.-+||++-.|+.||.+ +.+.+|.++|++||++|.+|-|||-.+ .+++ ..... ..+ -.++|..|.+.-
T Consensus 180 -~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~iifsd-~~~~w~~Ni----ilC~SLSK~GLP 253 (417)
T COG3977 180 -TGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGIIFSD-ATPLWNENI----ILCMSLSKLGLP 253 (417)
T ss_pred -cceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCceeccc-ccccCCCCE----EEEeehhhcCCC
Confidence 3499999999999988 577888889999999999999999753 2221 11111 112 457788886654
Q ss_pred CcCceee
Q psy13453 757 NFDCSAM 763 (764)
Q Consensus 757 P~~~g~l 763 (764)
---||++
T Consensus 254 G~R~GIi 260 (417)
T COG3977 254 GSRCGII 260 (417)
T ss_pred CcceeEE
Confidence 4456654
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.026 Score=64.79 Aligned_cols=174 Identities=16% Similarity=0.037 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
+..+.++.+.|++++.-... ....|+.+|||||..|+++||.... + +.+|.....-
T Consensus 84 ~~~~~~lae~L~~~~p~~~~--------~~v~f~~SGseA~e~AiklAr~~tg-r---------------~~ii~~~~~Y 139 (445)
T PRK08593 84 HEPLVRLAKKLCELAPGDFE--------KRVTFGLSGSDANDGIIKFARAYTG-R---------------PYIISFTNAY 139 (445)
T ss_pred CHHHHHHHHHHHHhCCCCCC--------CEEEECCchHHHHHHHHHHHHHhhC-C---------------CeEEEECCCc
Confidence 34555666777777632100 1468999999999999999987521 1 1234444555
Q ss_pred chhHHHHHHhCCC-------------ceEEEecCCCCc-----ccH-------HHHHHHHHHhhhcCCCceEEEEeeccC
Q psy13453 641 NSSVEKSAIIGDV-------------PVRQLRSDDNGV-----LRG-------DALLTAVKEDLAKGLIPCCLIATLGTT 695 (764)
Q Consensus 641 H~Sv~kAa~~lGl-------------~v~~Vp~d~~g~-----md~-------~~Le~~I~~~~~~G~~p~~VvataGTT 695 (764)
|=...-+..+.+. .+..+|..+..+ -+. +++++.+++... +....+|+.---..
T Consensus 140 HG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iAavI~EPv~g 218 (445)
T PRK08593 140 HGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLP-ADEVACIVIETIQG 218 (445)
T ss_pred CCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhcC-CCceEEEEEccccC
Confidence 6444434333221 244555432111 112 334444432111 12344555544444
Q ss_pred Ccccccc----HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCcee
Q psy13453 696 GTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSA 762 (764)
Q Consensus 696 ~~GaiDp----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~ 762 (764)
..|.+-| +++|+++|++||++|++|-++.|+-....-+....-|+ ..|.+++ -|.++.-+..|+
T Consensus 219 ~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv-~pDi~t~--gK~l~~G~p~ga 286 (445)
T PRK08593 219 DGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNI-TPDLMSF--GKSLAGGMPMSA 286 (445)
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCC-CCCEeee--cccccCCcccEE
Confidence 5577766 99999999999999999999866422111111111255 4676654 666653233443
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.018 Score=63.74 Aligned_cols=179 Identities=16% Similarity=0.035 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
+....++.++|.++++-.- ....|+.+||+||-.|++.||..+...... .++.++.....-
T Consensus 58 ~~~~~~la~~L~~~~p~~~---------~~v~f~~sGseAve~Alkla~~~~~~~~~~----------~r~~il~~~~~y 118 (339)
T PF00202_consen 58 HPEAAELAEKLAELFPGGL---------DRVFFANSGSEAVEAALKLARQYHNKRAYT----------GRRKILAFEGSY 118 (339)
T ss_dssp EHHHHHHHHHHHHHSSTTE---------EEEEEESSHHHHHHHHHHHHHHHHHHTHHH----------TTTEEEEETTTB
T ss_pred ccchhhhhhhhhhcccccc---------ceeeeccCchHHHHHHHHHhhccccccccc----------CCceEEEeeeee
Confidence 3445567778888883221 357899999999999999999432221110 112345555566
Q ss_pred chhHHHHHHhCC------------CceEEEecCCCCc-----ccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---
Q psy13453 641 NSSVEKSAIIGD------------VPVRQLRSDDNGV-----LRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF--- 700 (764)
Q Consensus 641 H~Sv~kAa~~lG------------l~v~~Vp~d~~g~-----md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai--- 700 (764)
|-...-+..+.+ ..+..+|...... -..+.+++.+.+... ....+|+.--.....|.+
T Consensus 119 HG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~iaavivEPi~g~~G~~~~~ 196 (339)
T PF00202_consen 119 HGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAADEEEQACLNALEELIAALNA--DEIAAVIVEPIQGEGGMIPPP 196 (339)
T ss_dssp -TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHHG--GGEEEEEEESSBTTTTSBEE-
T ss_pred eccCcccccccCCccccccccccccccccccCCccchhhhHHHHHHHHHHHHHhhcC--CcEEEEEEeccccccCccccc
Confidence 644444444321 1467788754222 112234444433222 224555555555555654
Q ss_pred -ccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 701 -DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 701 -Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
+=+++|.++|++||+.|.+|=.+.|+.....-+.....|+ ..|-+++. |.++.-+..|++
T Consensus 197 ~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv-~PDiv~~g--K~l~gG~p~sav 257 (339)
T PF00202_consen 197 PEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGV-DPDIVTFG--KGLGGGLPISAV 257 (339)
T ss_dssp TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTS-SSSEEEEE--GGGGTTSSEEEE
T ss_pred cchhhehcccccccccceecccccccccccCCccceecccc-cCcccccc--cchhhhhhcccc
Confidence 3479999999999999999999888644333333333566 57999997 776655555554
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.004 Score=69.42 Aligned_cols=192 Identities=11% Similarity=-0.044 Sum_probs=115.6
Q ss_pred cccccCCCCCh-HHHHHHHHHHhhcccC------ccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCCh
Q psy13453 525 FNAYFPTGSSY-PSIVGDMLSGAFGLIG------FSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTA 597 (764)
Q Consensus 525 ~~~~~~~~~~~-~~~lad~l~~~lN~n~------~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGg 597 (764)
.+.|.+++... ..++-.+-.+.+|.+. -...-+|.+.++-.++.+.|+++|+.|+++ .--++++||
T Consensus 5 ~~nF~aGPa~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y-------~Vlfl~Ggg 77 (364)
T PRK12462 5 QLNFSGGPGALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEY-------GVVFLQGGS 77 (364)
T ss_pred cceecCCCcCCCHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCCC-------eEEEEeccH
Confidence 45666665544 4566666667766433 233457889999999999999999998753 223455667
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCccccccCce-EEEecCCcchhHHHHHHhCCCceEEEecCC----CCcccHHHHH
Q psy13453 598 SEATLVSILVAKRKMINHWQSKNPSLTENDIRNKL-VAYTSDQSNSSVEKSAIIGDVPVRQLRSDD----NGVLRGDALL 672 (764)
Q Consensus 598 TeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~-vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~----~g~md~~~Le 672 (764)
|.+.-.+++ ..+.+ + ...+ ++.+..-++-..+.|.++ | ++..+.... ..-.+++.+
T Consensus 78 T~~~ea~~~----Nll~~-----------g-~~~~~~~~tG~fg~r~~~ea~~~-g-~v~~~~~~~~~~~~~~p~~~~~- 138 (364)
T PRK12462 78 SLQFSMIPM----NFSRP-----------G-AAAPEYVTTGYWSRKAIGEASRV-A-AMRVVWDGAASGYRTLPSLAEL- 138 (364)
T ss_pred HHHHHHHHH----HcCCC-----------C-CcEEEEEeCCHHHHHHHHHHHhc-C-CceEecCcCCCCCCcCCCHHHh-
Confidence 776433332 11111 0 0012 333333334444444444 5 555443211 123455554
Q ss_pred HHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCc
Q psy13453 673 TAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHK 752 (764)
Q Consensus 673 ~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK 752 (764)
.+.++ .-+|..|...|.+|.--| ++.+.++..+.||+.-+.+...++ +++.|-|....+|
T Consensus 139 -~~~~d------~~~v~~t~NETstGv~~~-----~~~~~~~~llvvD~sS~~~s~pid--------~~~~dvi~agsQK 198 (364)
T PRK12462 139 -DWDAR------APFRHYVSNETVEGLQFP-----DAAGLPDSPLIADMSSDFMSRPFD--------VEAYGMVYAHAQK 198 (364)
T ss_pred -ccCCC------CcEEEEccCCCCceEecC-----cccccCCCeEEEEcCchhhCCCCC--------hHHccEEEeeccc
Confidence 12222 347999999999999876 444457899999997554433332 2233999999999
Q ss_pred cCCCCcCceee
Q psy13453 753 WLLVNFDCSAM 763 (764)
Q Consensus 753 ~l~~P~~~g~l 763 (764)
.++ |-|.+++
T Consensus 199 nlg-P~Gltvv 208 (364)
T PRK12462 199 NLG-PAGVTVA 208 (364)
T ss_pred cCC-CCceEEE
Confidence 999 8888875
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.018 Score=64.49 Aligned_cols=215 Identities=8% Similarity=-0.043 Sum_probs=123.0
Q ss_pred ee-HHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc----CCCcee
Q psy13453 22 YE-SFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS----NGPLKV 96 (764)
Q Consensus 22 YS-v~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~----~~wlHV 96 (764)
|+ ....++..|+.. +.+|+++++.+|+++|++++... ++-+++-+-++.++|.+=|.+++.+ .+|+.+
T Consensus 137 y~~y~~~~~~~g~~~---~~v~~~~~~~~d~~~l~~~~~~~----~~~~v~l~~P~NPTG~~~~~~~l~~l~~~~~~vi~ 209 (380)
T PLN03026 137 FGMYVFDAAVNGAEV---IKVPRTPDFSLDVPRIVEAVETH----KPKLLFLTSPNNPDGSIISDDDLLKILELPILVVL 209 (380)
T ss_pred hHHHHHHHHHcCCEE---EEeecCCCCCcCHHHHHHHHhcc----CCcEEEEeCCCCCCCCCCCHHHHHHHHhcCCEEEE
Confidence 44 344677888887 88999888999999999998421 1224544569999999977777554 467888
Q ss_pred ccccccc-c-cee--eeecCCCc-cccccccccc---------cCCc-------ccCCCCcccHHHHHHHHHHccHHH-H
Q psy13453 97 GGVLRRV-Y-SSC--LVPRGQKS-LRTTVLFHFL---------FQHW-------QIPLGRRFRALKLWMTLRSYGLKG-L 154 (764)
Q Consensus 97 Da~l~~~-y-~s~--ll~rd~~~-l~~~~s~~~d---------~~d~-------tle~SRr~~ALklWatL~~lG~eG-y 154 (764)
|.+.... + .+. .+...... .-.+|+=.+. .+.. .....-....+...++...+-... +
T Consensus 210 DeaY~~~~~~~~~~~~~~~~~~viv~~SfSK~~glaGlRiGy~~~~~~~i~~l~~~~~~~~~~~~~q~aa~~aL~~~~~~ 289 (380)
T PLN03026 210 DEAYIEFSTQESRMKWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPYNVSVAAEVAACAALSNPKYL 289 (380)
T ss_pred ECcchhhcCCcchHHHHHhCCCEEEEecchHhhcCccccceeeecCHHHHHHHHHhcCCCCCCHHHHHHHHHHhhCHHHH
Confidence 8864211 0 110 00000000 0011110000 0000 000011233445555555553334 3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEec
Q psy13453 155 QAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKG 234 (764)
Q Consensus 155 ~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t 234 (764)
++..++..+..+++.+.|++++.+++ .++..+-+.++..+ ..+ ..++.++|.+.|..+...+
T Consensus 290 ~~~~~~~~~~r~~l~~~L~~~~~~~~-~p~~~~f~~~~~~~---------------~~~--~~~~~~~l~~~gI~v~~~~ 351 (380)
T PLN03026 290 EDVKNALVEERERLFGLLKEVPFLEP-YPSDANFILCRVTS---------------GRD--AKKLKEDLAKMGVMVRHYN 351 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCeE-CCCCCeEEEEECCC---------------CCC--HHHHHHHHHHCCeEEEECC
Confidence 45556667777788899998865554 45555555555321 111 2467888888898654433
Q ss_pred eeCCeeEEEEeccCCCCCHHHHHHHHHHHHH
Q psy13453 235 SFQDRLFMRFAICSSQTEESDVQLGWNEIRT 265 (764)
Q Consensus 235 ~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~ 265 (764)
.-.+..++|+++. ++++.+.+++.+++
T Consensus 352 ~~~~~~~lRis~~----~~~~~~~l~~al~~ 378 (380)
T PLN03026 352 SKELKGYIRVSVG----KPEHTDALMEALKQ 378 (380)
T ss_pred CCCCCCEEEEecC----CHHHHHHHHHHHHH
Confidence 3233568999988 46688888887765
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.016 Score=64.07 Aligned_cols=211 Identities=12% Similarity=0.042 Sum_probs=124.7
Q ss_pred eeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCcee
Q psy13453 22 YESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKV 96 (764)
Q Consensus 22 YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHV 96 (764)
..+..+++..|+.. +.+|+++++.+|+++|++++.+. ++-+++-+-+..++|.+=+.+++.+ +.++.+
T Consensus 116 ~~~~~~~~~~g~~~---~~i~~~~~~~~d~~~l~~~~~~~----~~~~v~l~~p~NPtG~~~~~~~~~~i~~~~~~~ii~ 188 (356)
T PRK04870 116 VMYRMSAKLAGLEF---VGVPLTADFTLDLPAMLAAIAEH----RPALVFLAYPNNPTGNLFDDADVERIIEAAPGLVVV 188 (356)
T ss_pred HHHHHHHHHcCCEE---EEecCCCCCCCCHHHHHHHhhcC----CCCEEEEcCCCCCCCCCCCHHHHHHHHHHCCCEEEE
Confidence 35567888999887 99999988999999999999742 1224444568999999977666443 677888
Q ss_pred ccccccc-cceee--eecCCCcc-ccccc--------cccc---------cCCcccCCCCcccHHHHHHHHHHcc-HHHH
Q psy13453 97 GGVLRRV-YSSCL--VPRGQKSL-RTTVL--------FHFL---------FQHWQIPLGRRFRALKLWMTLRSYG-LKGL 154 (764)
Q Consensus 97 Da~l~~~-y~s~l--l~rd~~~l-~~~~s--------~~~d---------~~d~tle~SRr~~ALklWatL~~lG-~eGy 154 (764)
|.+.... +.++. +......+ -.+|+ ..+- +....... ....+..+++...+- .+-+
T Consensus 189 De~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~GlRiG~~i~~~~~i~~~~~~~~~~--~~~~~~q~~a~~~l~~~~~~ 266 (356)
T PRK04870 189 DEAYQPFAGDSWLPRLARFPNLLVMRTVSKLGLAGLRLGYLAGHPAWIAELDKVRPPY--NVNVLTQATALFALEHVDVL 266 (356)
T ss_pred ECCchhhcCcchHHHHhhCCCEEEEecchhhhhHHHhhhhhhCCHHHHHHHHHccCCC--cCCHHHHHHHHHHHhCHHHH
Confidence 8753211 10100 00000000 00011 0000 00000000 122233333222221 2347
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEec
Q psy13453 155 QAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKG 234 (764)
Q Consensus 155 ~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t 234 (764)
++..++..+..+++.+.+++.+++.+ .++..+.+.++.. + ..++.+.|.+.|.......
T Consensus 267 ~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~------------------~--~~~~~~~l~~~gI~v~~~~ 325 (356)
T PRK04870 267 DAQAAQLRAERTRLAAALAALPGVTV-FPSAANFILVRVP------------------D--AAAVFDGLKTRGVLVKNLS 325 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcEE-CCCCCeEEEEECC------------------C--HHHHHHHHHHCCEEEEECC
Confidence 77778888888899999999888865 4555554444321 0 1467788888998765544
Q ss_pred eeC--CeeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 235 SFQ--DRLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 235 ~l~--g~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
... +..++|+++. +.++.+.|++.|+++
T Consensus 326 ~f~~~~~~~iRis~~----~~~~~~~l~~al~~~ 355 (356)
T PRK04870 326 GMHPLLANCLRVTVG----TPEENAQFLAALKAA 355 (356)
T ss_pred CCCCCCCCeEEEeCC----CHHHHHHHHHHHHHh
Confidence 432 3568999887 577889998888764
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.016 Score=65.96 Aligned_cols=98 Identities=14% Similarity=0.137 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEeCC-CCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEE
Q psy13453 153 GLQAYLRKHISLAKKFADLVEQDDRFELVCP-PSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYI 231 (764)
Q Consensus 153 Gy~~~i~~~i~lA~~l~~~I~~~p~~ell~~-P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~v 231 (764)
+..++.++..+++++|++.|++. +|.++.+ .+..++.+.+.. .+.-...+.++|.+.|....
T Consensus 283 ~~~~~~~~l~~~a~~l~~~L~~~-G~~~~~~~~~t~i~~v~~~~----------------~~~~~~~~~~~L~~~GI~v~ 345 (416)
T PRK13034 283 EFKTYAKQVIANAQALAEVLKER-GYDLVSGGTDNHLLLVDLRP----------------KGLSGKDAEQALERAGITVN 345 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHc-CCEeccCCCCCcEEEEEcCC----------------CCCCHHHHHHHHHhCCcEEe
Confidence 44566789999999999999987 9998753 456665554321 11112456678888886432
Q ss_pred EeceeC-------CeeEEEEecc---CCCCCHHHHHHHHHHHHHHHH
Q psy13453 232 VKGSFQ-------DRLFMRFAIC---SSQTEESDVQLGWNEIRTATE 268 (764)
Q Consensus 232 s~t~l~-------g~~~LRi~v~---np~Tt~e~i~~~l~~l~~~~~ 268 (764)
...+. .+..||+++. .-..+++|++.+++.|.++..
T Consensus 346 -~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~ 391 (416)
T PRK13034 346 -KNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVLD 391 (416)
T ss_pred -ccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 21111 1457998642 225568999999999988854
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.037 Score=63.97 Aligned_cols=172 Identities=15% Similarity=0.048 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
+..+.++.+.|.+++.-+- ....|+.+|||||..|++.||.....+ +.. .++-++.....-
T Consensus 94 ~~~~~~lae~L~~~~p~~~---------~~v~f~~sGseAve~AlklAr~~~~~~-g~t---------~r~~Ii~~~~~Y 154 (466)
T PRK07036 94 NAPAAELAAKLAELAPGDL---------NHVFLTTGGSTAVDSALRFVHYYFNVR-GRP---------AKKHIITRGDAY 154 (466)
T ss_pred CHHHHHHHHHHHHhCCCCc---------CEEEEeCCchHHHHHHHHHHHHHHHhc-CCC---------CccEEEEEcCcc
Confidence 4556667777777753211 246899999999999999998754221 100 012234444444
Q ss_pred chhHHHHHHhCCC------------ceEEEecCCC----Ccc--------cHHHHHHHHHHhhhcCCCceEEEEeeccCC
Q psy13453 641 NSSVEKSAIIGDV------------PVRQLRSDDN----GVL--------RGDALLTAVKEDLAKGLIPCCLIATLGTTG 696 (764)
Q Consensus 641 H~Sv~kAa~~lGl------------~v~~Vp~d~~----g~m--------d~~~Le~~I~~~~~~G~~p~~VvataGTT~ 696 (764)
|=...-+..+.|- .+..+|.... ..+ ..+.+++.|.. ..+..+.+|++---...
T Consensus 155 HG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~iAavi~EPv~g~ 232 (466)
T PRK07036 155 HGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILS--LGADNIAAFIAEPILGS 232 (466)
T ss_pred CCccHhhhcccCCCcccccccCCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHH--cCCCceEEEEEeCCcCC
Confidence 5333223222221 2444443211 111 13445555543 12334666666655555
Q ss_pred cccccc----HHHHHHHHHhcCCEEEEeccccccccccchhhhh-hcCCCcccEEEEcCCccCCC
Q psy13453 697 TCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHL-KRGLEYVDSFDFNTHKWLLV 756 (764)
Q Consensus 697 ~GaiDp----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~-l~gie~aDSit~d~HK~l~~ 756 (764)
.|.+-| +++|.++|++||+.|++|-.+.|+-....-+... .-|+ ..|-+++ -|.++.
T Consensus 233 gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv-~PDivt~--gK~l~g 294 (466)
T PRK07036 233 GGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGI-QPDIITF--AKGLTS 294 (466)
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchhhhhhhhcCC-CCCEEEE--cccccc
Confidence 677766 9999999999999999999987652222111111 1255 4676666 576654
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.017 Score=66.55 Aligned_cols=171 Identities=12% Similarity=0.009 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
+..+.++.+.|++++..+- ....|+.+|||||-.|++.||.....+ +.. .++-++.....-
T Consensus 91 ~~~~~~lae~L~~~~p~~~---------~~v~f~~SGseAve~AlKlar~~~~~~-g~t---------~r~~il~~~~~y 151 (460)
T PRK06105 91 HGPVIDLAEKLVAMAPVPM---------SKVFFTNSGSEANDTVVKLVWYYNNAL-GRP---------EKKKIISRQRGY 151 (460)
T ss_pred CHHHHHHHHHHHHhCCCCC---------CEEEEeCCcHHHHHHHHHHHHHHHHhc-CCC---------CCcEEEEecCcc
Confidence 4455566777777764221 246899999999999999998653211 100 012244445555
Q ss_pred chhHHHHHHhCCC------------ceEEEecCCCCc-------------ccHHHHHHHHHHhhhcCCCceEEEEeeccC
Q psy13453 641 NSSVEKSAIIGDV------------PVRQLRSDDNGV-------------LRGDALLTAVKEDLAKGLIPCCLIATLGTT 695 (764)
Q Consensus 641 H~Sv~kAa~~lGl------------~v~~Vp~d~~g~-------------md~~~Le~~I~~~~~~G~~p~~VvataGTT 695 (764)
|=...-+..+.|. .+..+|.....+ -..++|++.|... ....+.+|++=--..
T Consensus 152 HG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~~--~~~~iAavIvEPiqg 229 (460)
T PRK06105 152 HGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLANELEALILAE--GPDTIAAFIGEPVMG 229 (460)
T ss_pred CCcchhheeccCCcccccccCCCCCCCEEcCCCcccccccCCCChHHHHHHHHHHHHHHHHHc--CCCceEEEEEccccC
Confidence 5444333332221 233343221111 1246677776532 122355555544344
Q ss_pred Ccccccc----HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCC
Q psy13453 696 GTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLL 755 (764)
Q Consensus 696 ~~GaiDp----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~ 755 (764)
..|.+-+ +++++++|++||+.|++|-.+.|+-....-+.....|+ ..|-+++ -|.++
T Consensus 230 ~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v-~PDi~~~--gK~lg 290 (460)
T PRK06105 230 AGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGI-KPDILVM--SKQLS 290 (460)
T ss_pred CCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCC-CCCeeee--ecccc
Confidence 4566666 99999999999999999999866433222222222355 3675554 46554
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.035 Score=64.02 Aligned_cols=173 Identities=14% Similarity=0.001 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
..+.++.+.|++++..+. ....|+.+|||||-.|++.||... .+ +.+|.....-|
T Consensus 96 ~~~~~lae~L~~~~p~~~---------~~v~f~~SGsEA~e~AlklAr~~t-gr---------------~~ii~~~~~yH 150 (457)
T PRK05639 96 ERAIRVAEKLAEISPIEN---------PKVLFGLSGSDAVDMAIKVSKFST-RR---------------PWILAFIGAYH 150 (457)
T ss_pred HHHHHHHHHHHhhCCCCc---------CEEEEeCchHHHHHHHHHHHHHhc-CC---------------CeEEEECCCcC
Confidence 344456677777764321 246899999999999999999652 11 12344444555
Q ss_pred hhHHHHHHhCC--------C-----ceEEEecCCCCc--------ccHH--------HHHHHHHHhhhcCCCceEEEEee
Q psy13453 642 SSVEKSAIIGD--------V-----PVRQLRSDDNGV--------LRGD--------ALLTAVKEDLAKGLIPCCLIATL 692 (764)
Q Consensus 642 ~Sv~kAa~~lG--------l-----~v~~Vp~d~~g~--------md~~--------~Le~~I~~~~~~G~~p~~Vvata 692 (764)
=...-+..+.| . ++..+|.....+ -|.+ .|++.|......+....+|+.--
T Consensus 151 G~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EP 230 (457)
T PRK05639 151 GQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEP 230 (457)
T ss_pred CccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECC
Confidence 43333333322 1 245555432111 1222 34444322111123455555444
Q ss_pred ccCCcccc----ccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCcee
Q psy13453 693 GTTGTCAF----DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSA 762 (764)
Q Consensus 693 GTT~~Gai----Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~ 762 (764)
-....|.+ +=+++|.++|++||+.|++|-++.|+-....-+....-|+ ..|-++ +-|.++.-++.|+
T Consensus 231 iqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv-~PDiv~--~gK~l~gG~pi~a 301 (457)
T PRK05639 231 IQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEV-KPDLII--FGKGVASGMGLSG 301 (457)
T ss_pred ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcCC-CCCEEE--echhhcCCCccee
Confidence 33334544 3488999999999999999999887422221112223366 578777 5787764444444
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.015 Score=66.89 Aligned_cols=171 Identities=13% Similarity=0.071 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
+..+.++.+.|++++.-+- ....|+.+|||||..|+++||.....+ +.. .++.+|.....-
T Consensus 93 ~~~~~~lae~L~~~~p~~~---------~~v~f~~SGseA~e~AlklAr~~~~~~-g~~---------~r~~ii~~~~~y 153 (456)
T PRK07480 93 HPPAIELAAKLAEVAPPGF---------NHVFFTNSGSEANDTVLRMVRHYWALK-GKP---------QKKVIISRKNGY 153 (456)
T ss_pred CHHHHHHHHHHHHhCCCCc---------CEEEEeCCcHHHHHHHHHHHHHHHHhc-CCC---------CCcEEEEECCCc
Confidence 3455556777777763211 246899999999999999999864221 100 012233334444
Q ss_pred chhHHHHHHhCCC------------ceEEEecCCCC----ccc--------HHHHHHHHHHhhhcCCCceEEEEeeccCC
Q psy13453 641 NSSVEKSAIIGDV------------PVRQLRSDDNG----VLR--------GDALLTAVKEDLAKGLIPCCLIATLGTTG 696 (764)
Q Consensus 641 H~Sv~kAa~~lGl------------~v~~Vp~d~~g----~md--------~~~Le~~I~~~~~~G~~p~~VvataGTT~ 696 (764)
|=...-+..+.|. .+..+|..... ..+ .++|++.+.+. .+..+.+|++---...
T Consensus 154 HG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~vAAvi~EPiqg~ 231 (456)
T PRK07480 154 HGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILEL--GADNVAAFIGEPIQGA 231 (456)
T ss_pred CCcchhhhhccCChhhhcccCCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHhc--CCCcEEEEEEccccCC
Confidence 5333222222221 23333321100 011 35666555432 1223445544333334
Q ss_pred cccccc----HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCC
Q psy13453 697 TCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLL 755 (764)
Q Consensus 697 ~GaiDp----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~ 755 (764)
.|.+-+ +++|+++|++||+.|++|-.+.|+-....-+....-|+ ..|-+++ -|.++
T Consensus 232 gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv-~PDiv~~--gK~l~ 291 (456)
T PRK07480 232 GGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWFGSQHFGI-KPDLMTI--AKGLT 291 (456)
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhhhhhcCC-CCCeeee--ehhhc
Confidence 466655 99999999999999999999877532222222222355 4676655 67554
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.019 Score=62.82 Aligned_cols=213 Identities=11% Similarity=-0.014 Sum_probs=121.5
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCc
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPL 94 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wl 94 (764)
.|.+...++.+.|... +.+|. +|+++|++.+++... .++-+++.....+++|.+.|++++.+ ++++
T Consensus 109 ~~~~~~~~~~~~g~~~---~~~~~-----~d~~~l~~~~~~~~~-~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~l 179 (360)
T TIGR00858 109 NHASLIDGCRLSGARV---RRYRH-----NDVEHLERLLEKNRG-ERRKLIVTDGVFSMDGDIAPLPQLVALAERYGAWL 179 (360)
T ss_pred ccHHHHHHHHhcCCce---EEecC-----CCHHHHHHHHHHccc-CCCeEEEEeCCccCCCCCcCHHHHHHHHHHcCcEE
Confidence 5778888888888776 66663 689999999975321 11223343335678999999999886 8889
Q ss_pred eeccccccc-cc----eee-ee---cCCC-----cccccccc--cc-----c--------cCCcccCCCC-cccHHHHHH
Q psy13453 95 KVGGVLRRV-YS----SCL-VP---RGQK-----SLRTTVLF--HF-----L--------FQHWQIPLGR-RFRALKLWM 144 (764)
Q Consensus 95 HVDa~l~~~-y~----s~l-l~---rd~~-----~l~~~~s~--~~-----d--------~~d~tle~SR-r~~ALklWa 144 (764)
.+|...... +. +.+ +. .+.. ++...|.. .+ + ...+...++- ......+.+
T Consensus 180 i~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 259 (360)
T TIGR00858 180 MVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSYGAYVAGSQALIDYLINRARTLIFSTALPPAVAAAALA 259 (360)
T ss_pred EEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhccCcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHH
Confidence 999864211 10 000 00 0000 00000000 00 0 0111222222 111223344
Q ss_pred HHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHH
Q psy13453 145 TLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRII 224 (764)
Q Consensus 145 tL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~ 224 (764)
++..+- ...++.++..+..+++.+.|++. ++++. ++..+.+.|++.+ . .-..++.++|.
T Consensus 260 al~~~~--~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~---------------~--~~~~~~~~~l~ 318 (360)
T TIGR00858 260 ALELIQ--EEPWRREKLLALIARLRAGLEAL-GFTLM-PSCTPIVPVIIGD---------------N--ASALALAEELQ 318 (360)
T ss_pred HHHHHh--hCHHHHHHHHHHHHHHHHHHHHc-CCccC-CCCCCEEEEEeCC---------------H--HHHHHHHHHHH
Confidence 454332 23567788889999999999986 57754 4556666665421 0 11257888898
Q ss_pred hcCcEEEEece---eCCeeEEEEeccCCCCCHHHHHHHHHHH
Q psy13453 225 ARKVIYIVKGS---FQDRLFMRFAICSSQTEESDVQLGWNEI 263 (764)
Q Consensus 225 ~~G~~~vs~t~---l~g~~~LRi~v~np~Tt~e~i~~~l~~l 263 (764)
+.|........ ..+..++|+++... .++++++.+++.|
T Consensus 319 ~~gI~v~~~~~~~~~~~~~~iRis~~~~-~~~~~i~~~l~~l 359 (360)
T TIGR00858 319 QQGIFVGAIRPPTVPAGTSRLRLTLSAA-HTPGDIDRLAEAL 359 (360)
T ss_pred HCCeeEeeeCCCCCCCCCceEEEEEcCC-CCHHHHHHHHHhh
Confidence 88875543211 13456899976644 4688999998865
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.028 Score=64.10 Aligned_cols=172 Identities=13% Similarity=0.008 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcch
Q psy13453 563 LEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNS 642 (764)
Q Consensus 563 lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~ 642 (764)
.+.++.+.|++++..+. ...-.|+.+|||||-.|++.||... .+ +-++.....-|=
T Consensus 84 ~~~~la~~l~~~~p~~~--------~~~~~f~~sGseA~e~AlklAr~~t-gr---------------~~ii~~~~~yHG 139 (421)
T PRK06777 84 SYVTLAERINALAPIDG--------PAKTAFFTTGAEAVENAVKIARAYT-GR---------------PGVIAFGGAFHG 139 (421)
T ss_pred HHHHHHHHHHHhCCCCC--------CceEEEeCCcHHHHHHHHHHHHHhh-CC---------------CeEEEEcCCcCC
Confidence 34456677777764211 0246899999999999999998752 11 113334444453
Q ss_pred hHHHHHHhCCC-------------ceEEEecCCCC-----cccHHHHHHHHHHhhhcCCCceEEEEeeccCCccc----c
Q psy13453 643 SVEKSAIIGDV-------------PVRQLRSDDNG-----VLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCA----F 700 (764)
Q Consensus 643 Sv~kAa~~lGl-------------~v~~Vp~d~~g-----~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Ga----i 700 (764)
...-+..+.|. .+..+|..+.. .-+++.+++.+++.. .+..+.+|+.---....|. -
T Consensus 140 ~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~-~~~~iaavi~Epv~~~~G~~~~~~ 218 (421)
T PRK06777 140 RTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADI-APDQVAAILLEPIQGEGGFNVAPP 218 (421)
T ss_pred ccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhcc-CCCceEEEEECCccCCCCCccCCH
Confidence 33333322221 12333332111 124667787775421 1223445544433333342 2
Q ss_pred ccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCcee
Q psy13453 701 DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSA 762 (764)
Q Consensus 701 Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~ 762 (764)
+-+++|.++|++||++|++|-.|.|.-....-+....-|+ ..|-++ +-|.++.-+..|+
T Consensus 219 ~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~-~pDiv~--~sK~l~~G~piga 277 (421)
T PRK06777 219 EFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDV-KPDLIT--MAKSLGGGMPISA 277 (421)
T ss_pred HHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcCC-CCCEEe--eehhhcCCCceEE
Confidence 3499999999999999999999987422211111111243 457554 6787763333444
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.033 Score=61.59 Aligned_cols=211 Identities=9% Similarity=0.053 Sum_probs=120.9
Q ss_pred HHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCceecc
Q psy13453 24 SFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKVGG 98 (764)
Q Consensus 24 v~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHVDa 98 (764)
...+++.+|... +.||+++++.+|+++|++++.+. ++-+++-+-++-++|.+=+.+++.+ +.++=+|.
T Consensus 113 ~~~~~~~~g~~~---~~v~~~~~~~~d~~~l~~~~~~~----~~k~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe 185 (351)
T PRK14807 113 YSVYSKIAGAVE---IPVKLKEDYTYDVGSFIKVIEKY----QPKLVFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDE 185 (351)
T ss_pred HHHHHHHcCCeE---EEeecCCCCCCCHHHHHHHhhcc----CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEeC
Confidence 455678899877 89999988999999999998742 1224544568999999988777654 44454555
Q ss_pred ccccccc----e-------eeeec-CCCccc-cccccccccCCc-------ccCCCCcccHHHHHHHHHHccHHHHHHHH
Q psy13453 99 VLRRVYS----S-------CLVPR-GQKSLR-TTVLFHFLFQHW-------QIPLGRRFRALKLWMTLRSYGLKGLQAYL 158 (764)
Q Consensus 99 ~l~~~y~----s-------~ll~r-d~~~l~-~~~s~~~d~~d~-------tle~SRr~~ALklWatL~~lG~eGy~~~i 158 (764)
.....+. + .+..+ -.+.+- ..+...+-.+.. .+........+..++....+-...+.+.+
T Consensus 186 ~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~v~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~ 265 (351)
T PRK14807 186 AYFEFYGNTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAVANENILKYLNLVKSPYNINSLSQVIALKVLRTGVLKERV 265 (351)
T ss_pred cchhhcccchHHHhhhCCCEEEEecchHhcccchhceeeeecCHHHHHHHHHccCCCCcCHHHHHHHHHHHhHHHHHHHH
Confidence 4311111 0 00000 000000 000000000000 00001123344445555555444567777
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEece-eC
Q psy13453 159 RKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGS-FQ 237 (764)
Q Consensus 159 ~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~-l~ 237 (764)
++..+..+++.+.+++.+++.+ .++.-+-+..++. + ..++.+.|.+.|..+..... ..
T Consensus 266 ~~~~~~r~~l~~~l~~~~g~~~-~~~~~~~~~i~~~----------------~----~~~~~~~l~~~gV~v~~~~~~~~ 324 (351)
T PRK14807 266 NYILNERERLIKELSKIPGIKV-YPSKTNFILVKFK----------------D----ADYVYQGLLERGILVRDFSKVEG 324 (351)
T ss_pred HHHHHHHHHHHHHHHhCCCcEE-CcCCccEEEEEcC----------------C----HHHHHHHHHHCCEEEEECCCCCC
Confidence 8888888889999988888875 4555443333321 1 24678888888976543321 12
Q ss_pred CeeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 238 DRLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 238 g~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
...++|+++++ +++.+.|++.|+++
T Consensus 325 ~~~~iRis~~~----~~~~~~l~~~l~~~ 349 (351)
T PRK14807 325 LEGALRITVSS----CEANDYLINGLKEL 349 (351)
T ss_pred CCCeEEEEcCC----HHHHHHHHHHHHHh
Confidence 35689999875 45677888877654
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0092 Score=68.28 Aligned_cols=165 Identities=15% Similarity=0.000 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
+..+.++.+.|.++++... ....|+.+||||+..|++.||.... + +.++.....-
T Consensus 92 ~~~~~~la~~L~~~~~~~~---------~~v~f~~SGsEA~e~AiklAr~~tg-r---------------~~ii~~~~~y 146 (433)
T PRK00615 92 SEQEILFAEELFSYLGLED---------HKIRFVSSGTEATMTAVRLARGITG-R---------------SIIIKFLGCY 146 (433)
T ss_pred CHHHHHHHHHHHHhCCCCc---------CEEEEeCchHHHHHHHHHHHHHhhC-C---------------CEEEEEcCcc
Confidence 4456677888888875321 2468999999999999999997521 1 1122222222
Q ss_pred chhH---HHHHHhCCC----------------ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc
Q psy13453 641 NSSV---EKSAIIGDV----------------PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD 701 (764)
Q Consensus 641 H~Sv---~kAa~~lGl----------------~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD 701 (764)
|=.. .-+....+- ....+|- -|+++|++.+++.. ..+.+|+.---....|.+-
T Consensus 147 HG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~---~~~aavI~Epv~~~~G~~~ 218 (433)
T PRK00615 147 HGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPY-----NDFQIFQTVMNSLG---HRVAGVIFEPICANMGVVL 218 (433)
T ss_pred CCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCC-----CCHHHHHHHHHhcC---CceEEEEECCCCCCCCccc
Confidence 2211 001111100 0011111 16889999886432 2344555544444456665
Q ss_pred c----HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCcee
Q psy13453 702 N----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSA 762 (764)
Q Consensus 702 p----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~ 762 (764)
| +++|.++|++||+.|++|-++.|+ ..-..+....-|+ ..|-++ +-|.++.-+.+|+
T Consensus 219 p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~~ga~~~~gv-~PDi~~--~gK~lggG~p~~a 279 (433)
T PRK00615 219 PKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQGGAAAIYHV-KPDITV--YGKILGGGLPAAA 279 (433)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEcccccc-cccHhHHHHhcCC-CCCeEE--EcccccCCcceee
Confidence 5 459999999999999999999654 3222222222355 467665 5787764333443
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.014 Score=64.74 Aligned_cols=209 Identities=8% Similarity=0.004 Sum_probs=121.3
Q ss_pred HHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-------CCCceeccc
Q psy13453 27 ATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-------NGPLKVGGV 99 (764)
Q Consensus 27 Aa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-------~~wlHVDa~ 99 (764)
+++.+|... +.+|++ ++.+|+++|++++++. +-+++-+-++.++|.+=|.+++.+ ++|+.+|..
T Consensus 124 ~~~~~g~~~---~~~~~~-~~~~~~~~l~~~~~~~-----~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~ 194 (367)
T PRK02731 124 AAQAVGAKP---VEVPAK-DYGHDLDAMLAAVTPR-----TRLVFIANPNNPTGTYLPAEEVERFLAGVPPDVLVVLDEA 194 (367)
T ss_pred HHHHcCCeE---EEeccc-CCCCCHHHHHHHhCCC-----CcEEEEeCCCCCCCcCCCHHHHHHHHHhCCCCcEEEEECc
Confidence 467778766 888884 5889999999998632 224444678899999987777554 578888885
Q ss_pred ccc-c-----cceeeeec-CCCcc-ccccc---------cccccCCc-------ccCCCCcccHHHHHHHHHHccHHH-H
Q psy13453 100 LRR-V-----YSSCLVPR-GQKSL-RTTVL---------FHFLFQHW-------QIPLGRRFRALKLWMTLRSYGLKG-L 154 (764)
Q Consensus 100 l~~-~-----y~s~ll~r-d~~~l-~~~~s---------~~~d~~d~-------tle~SRr~~ALklWatL~~lG~eG-y 154 (764)
... . ..++-+.. ....+ -.+|+ ..+-+.+. .+...-....+..+++...+-.+. +
T Consensus 195 y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~l~~~~~~ 274 (367)
T PRK02731 195 YAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIAPPEIIDALNRVRQPFNVNSLALAAAVAALDDDAFV 274 (367)
T ss_pred HHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcccceeeeeCCHHHHHHHHHccCCCCCCHHHHHHHHHHhCCHHHH
Confidence 310 0 00000000 00000 00111 00000000 000000223456677766665444 4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEec
Q psy13453 155 QAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKG 234 (764)
Q Consensus 155 ~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t 234 (764)
++..++.-+..+++.+.+++. ++.+. ++..+.+.++.. . ..+ ..++.++|.+.|..+....
T Consensus 275 ~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~g~~~~i~~~-~--------------~~~--~~~~~~~L~~~gI~v~~~~ 335 (367)
T PRK02731 275 EKSRALNAEGMAWLTEFLAEL-GLEYI-PSVGNFILVDFD-D--------------GKD--AAEAYQALLKRGVIVRPVA 335 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCccC-CCCceEEEEECC-C--------------CCC--HHHHHHHHHHCCEEEEeCC
Confidence 555666667778888888887 77654 556666667652 1 111 2467888888887655443
Q ss_pred eeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13453 235 SFQDRLFMRFAICSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 235 ~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~ 267 (764)
......++|+++. +.++++.+++.|+++.
T Consensus 336 ~~~~~~~iRis~~----~~~e~~~l~~aL~~~~ 364 (367)
T PRK02731 336 GYGLPNALRITIG----TEEENRRFLAALKEFL 364 (367)
T ss_pred CCCCCCeEEEecC----CHHHHHHHHHHHHHHH
Confidence 3333468999874 5788999999988764
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.037 Score=63.48 Aligned_cols=177 Identities=13% Similarity=0.013 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEE-eCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCC
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGII-QSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQ 639 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~Gvf-TsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~ 639 (764)
+....++.+.|++++..+.. ...-+| +++|||||-.|++.||... . ++-+|.....
T Consensus 81 ~~~~~~lae~L~~~~p~~~~-------~~~~~f~~~sGsEA~e~AlklAr~~t-g---------------r~~Ii~~~~~ 137 (442)
T TIGR00709 81 TPLKDAFIEALLNIIPKRKM-------DYKLQFPGPSGADAVEAAIKLAKTYT-G---------------RTNVISFSGG 137 (442)
T ss_pred cHHHHHHHHHHHHhCCCcCC-------CccEEEeCCCHHHHHHHHHHHHHHhc-C---------------CCeEEEEcCC
Confidence 45556677788887642210 012244 5899999999999999762 1 0224556666
Q ss_pred cchhHHHHHHhCC------------CceEEEecCCCCcc--------cHHH----HHHHHHHhhhcCCCceEEEEeeccC
Q psy13453 640 SNSSVEKSAIIGD------------VPVRQLRSDDNGVL--------RGDA----LLTAVKEDLAKGLIPCCLIATLGTT 695 (764)
Q Consensus 640 aH~Sv~kAa~~lG------------l~v~~Vp~d~~g~m--------d~~~----Le~~I~~~~~~G~~p~~VvataGTT 695 (764)
-|=...-+..+.| ..+..+|.....+. +.+. +++.+.+.........+|++---..
T Consensus 138 yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g 217 (442)
T TIGR00709 138 FHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQG 217 (442)
T ss_pred cCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccC
Confidence 6655444444332 12444544322222 2222 3333322111112344444433333
Q ss_pred Ccccc----ccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 696 GTCAF----DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 696 ~~Gai----Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
+.|.+ +=+++|+++|++||++|+.|-.+.|+-....-+....-|+ ..|-+++ -|.++.-+..|++
T Consensus 218 ~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv-~PDiv~~--gK~l~~G~Pigav 286 (442)
T TIGR00709 218 EGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGI-EPDFVVM--SKAVGGGLPLAVL 286 (442)
T ss_pred CCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCC-CCcEEEE--cccccCCcccEEE
Confidence 33443 4689999999999999999999887543222222222355 4687774 6766544444443
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.037 Score=63.77 Aligned_cols=169 Identities=15% Similarity=0.116 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
....++.+.|+++++-+- ....|+.+|||||-.|++.||.....+ +..+ ++-+|.....-|
T Consensus 97 ~~~~~lAe~L~~~~p~~~---------~~v~f~~sGseAve~AlKlA~~~~~~r-g~~~---------r~~Ii~~~~~yH 157 (453)
T PRK06943 97 EPAIELAERLAALTGGTL---------GHAFFASDGASAVEIALKMSFHAWRNR-GRGD---------KREFVCLANGYH 157 (453)
T ss_pred HHHHHHHHHHHHhCCCCC---------CEEEEeCCCHHHHHHHHHHHHHHHHHh-CCCC---------CCEEEEECCCcC
Confidence 455567777777764321 246899999999999999998765322 1000 122444455555
Q ss_pred hhHHHHHHhCCC------------ceEEEecCCCCc------------ccHHHHHHHHHHhhhcCCCceEEEEeec-cCC
Q psy13453 642 SSVEKSAIIGDV------------PVRQLRSDDNGV------------LRGDALLTAVKEDLAKGLIPCCLIATLG-TTG 696 (764)
Q Consensus 642 ~Sv~kAa~~lGl------------~v~~Vp~d~~g~------------md~~~Le~~I~~~~~~G~~p~~VvataG-TT~ 696 (764)
=...-+..+.|- .+..+|.....+ =++++|++.|.. .+..+.+|++--. ...
T Consensus 158 G~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~iAAviiEPvvqg~ 234 (453)
T PRK06943 158 GETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAE---RAGKIAALIVEPLVQCA 234 (453)
T ss_pred CCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHHHHHHh---CCCceEEEEEecccccc
Confidence 433333332221 233444321111 134677777753 2234555554321 222
Q ss_pred cccc----ccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCC
Q psy13453 697 TCAF----DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLL 755 (764)
Q Consensus 697 ~Gai----Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~ 755 (764)
.|.+ +=++++.++|++||+.|++|-.+.|+-....-+....-|+ ..|-+++ -|.++
T Consensus 235 gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv-~PDivt~--gKgl~ 294 (453)
T PRK06943 235 AGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAGV-WPDFLCL--SKGIS 294 (453)
T ss_pred CCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchhHHHhCCC-CCCeEee--ehhhc
Confidence 3433 4688999999999999999999877533222222222355 4777777 45444
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.032 Score=63.04 Aligned_cols=218 Identities=10% Similarity=0.030 Sum_probs=125.0
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccCchhhhc-----CCC
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQSLNAPVS-----NGP 93 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDpi~~ia~-----~~w 93 (764)
.|-|+..++...|... +.+|. .|++.+++.++... +..+-+ +-.....++|.+-|++++.+ +++
T Consensus 140 ~H~s~~~~~~~~g~~~---~~~~~-----~d~~~l~~~l~~~~--~~~~~~v~~~~v~~~~G~~~~l~~i~~l~~~~~~~ 209 (406)
T PRK13393 140 NHASMIEGIRHSRAEK---RIFRH-----NDPADLERKLSDLD--PHRPKLVAFESVYSMDGDIAPIAEICDVAEKHGAM 209 (406)
T ss_pred hhHHHHHHHHHcCCeE---EEeCC-----CCHHHHHHHHHhcc--CCCCEEEEEcCCCCCCCchhCHHHHHHHHHHcCCE
Confidence 6888888888877543 56654 37888888886431 112334 45556778899999999876 788
Q ss_pred ceeccccc----cccceeeeec----C-CCcccccccc------cc--------c----cC-CcccCCCCc-ccHHHHHH
Q psy13453 94 LKVGGVLR----RVYSSCLVPR----G-QKSLRTTVLF------HF--------L----FQ-HWQIPLGRR-FRALKLWM 144 (764)
Q Consensus 94 lHVDa~l~----~~y~s~ll~r----d-~~~l~~~~s~------~~--------d----~~-d~tle~SRr-~~ALklWa 144 (764)
++||.... .+.+..++.. + ...+..+|+= .+ + +. .|....+.. ..+..+.+
T Consensus 210 livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~~GG~~~~~~~~~~~l~~~~~~~~~t~~~~p~~~aa~~a 289 (406)
T PRK13393 210 TYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGVMGGYITGSAALCDFIRSFASGFIFTTSLPPAVAAGALA 289 (406)
T ss_pred EEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhcccCceeeCCHHHHHHHHHhCcCceecCccCHHHHHHHHH
Confidence 99998753 1222111100 0 0111111110 00 0 00 011122222 22335566
Q ss_pred HHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHH
Q psy13453 145 TLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRII 224 (764)
Q Consensus 145 tL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~ 224 (764)
+|..+-..+. ..++..+++++|.+.+++. +++++ ++..+++.+... ......++.++|.
T Consensus 290 aL~~~~~~~~--~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~i~~v~~~-----------------~~~~~~~l~~~L~ 348 (406)
T PRK13393 290 SVRHLKASSA--ERERHQDRVARLRARLDKA-GIPHL-PNPSHIVPVMVG-----------------DPVLCKQISDELL 348 (406)
T ss_pred HHHHHhhCHH--HHHHHHHHHHHHHHHHHHc-CCCcC-CCCCCeEEEEeC-----------------CHHHHHHHHHHHH
Confidence 6666533332 2355678888999999875 67655 455666666431 0112357888888
Q ss_pred hc-CcEEEEe---ceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 225 AR-KVIYIVK---GSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 225 ~~-G~~~vs~---t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
++ |.+.... +.-.+...+|+++ +...++++++.+++.|+++.++
T Consensus 349 ~~~Gi~v~~~~~p~~p~g~~~iRis~-~~~~t~edid~l~~~l~~~~~~ 396 (406)
T PRK13393 349 DRYGIYVQPINYPTVPRGTERLRITP-SPLHTDADIEHLVQALSEIWAR 396 (406)
T ss_pred HhCCEEEEeECCCCCCCCCceEEEEE-CCCCCHHHHHHHHHHHHHHHHh
Confidence 74 8654322 1223556899964 4455789999999999988654
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.027 Score=63.82 Aligned_cols=226 Identities=6% Similarity=-0.098 Sum_probs=123.3
Q ss_pred eHHHHHhhcCCCCCCeEEecCC--CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccc---cCchhhhc-----CC
Q psy13453 23 ESFKATHSLSGTPDQVRLSGLP--DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDI---QSLNAPVS-----NG 92 (764)
Q Consensus 23 Sv~KAa~~LGl~~~~v~~Vpvd--~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~i---Dpi~~ia~-----~~ 92 (764)
....++.+.|+.. +.+|++ +++.+|+++|++++++. +.+++-+-++-++|.+ +++.++++ ++
T Consensus 132 ~~~~~~~~~g~~~---~~i~~~~~~~~~~d~~~l~~~~~~~-----~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~ 203 (409)
T PLN02656 132 IYELCAAFRHLEV---RYVDLLPEKGWEVDLDAVEALADQN-----TVALVIINPGNPCGNVYSYQHLKKIAETAEKLKI 203 (409)
T ss_pred cHHHHHHHcCCEE---EEEeCCCcCCCCCCHHHHHHHhccC-----ceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 3456778889887 899985 35689999999988642 3455555578899998 66777665 78
Q ss_pred Cceeccccccc-c-----ceeeeecC-CCc-cccccccc---------cccC----------Cc----c-c-CCCCcccH
Q psy13453 93 PLKVGGVLRRV-Y-----SSCLVPRG-QKS-LRTTVLFH---------FLFQ----------HW----Q-I-PLGRRFRA 139 (764)
Q Consensus 93 wlHVDa~l~~~-y-----~s~ll~rd-~~~-l~~~~s~~---------~d~~----------d~----t-l-e~SRr~~A 139 (764)
|+.+|...... | .+...+.. ... .-.+||=. +-.. .. . . ........
T Consensus 204 ~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRiG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 283 (409)
T PLN02656 204 LVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGWFVTTDPSGSFRDPKIVERIKKYFDILGGPAT 283 (409)
T ss_pred EEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhccCcceeEEEEEEeCcccccccHHHHHHHHHHHhhhcCCCH
Confidence 99999853211 1 11000000 000 00011100 0000 00 0 0 00001233
Q ss_pred HHHHHHHHHc--c-HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHH
Q psy13453 140 LKLWMTLRSY--G-LKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLN 216 (764)
Q Consensus 140 LklWatL~~l--G-~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n 216 (764)
+..+++...+ + .+-+++..+..-+..+++.+.|++++++..+..|+-+..+|--.|.... .+...--
T Consensus 284 ~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~~p~gg~~~w~~l~~~~~----------~~~~~~~ 353 (409)
T PLN02656 284 FIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKEIPCITCPHKPEGSMAVMVKLNLSLL----------EDISDDI 353 (409)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCcCCCeEEEEEEecchhhc----------CCCCCHH
Confidence 3444444444 2 2335555555556666788888887665444567666655522221000 0000001
Q ss_pred HHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 217 KAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 217 ~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
..+.+.+.+.|..+.-........++|++++. .++.+++.++.|+++.+.
T Consensus 354 ~~~~~~l~~~gV~v~pg~~fg~~~~iRi~~~~---~~e~l~eal~rl~~~~~~ 403 (409)
T PLN02656 354 DFCFKLAREESVIILPGTAVGLKNWLRITFAA---DPSSLEEALGRIKSFYLR 403 (409)
T ss_pred HHHHHHHHhCCEEEecchhcCCCCeEEEEeCC---CHHHHHHHHHHHHHHHHH
Confidence 23456667778766655444446789999995 478888888888877654
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.016 Score=65.01 Aligned_cols=217 Identities=10% Similarity=0.084 Sum_probs=121.2
Q ss_pred eeeHHHHHhhcCCCCCCeEEecCCC--CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccC---chhhhc-----
Q psy13453 21 IYESFKATHSLSGTPDQVRLSGLPD--SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQS---LNAPVS----- 90 (764)
Q Consensus 21 ~YSv~KAa~~LGl~~~~v~~Vpvd~--~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDp---i~~ia~----- 90 (764)
+.++..++...|+.. +.+|+++ ++.+|+++|++++++. +.+++-+.++.++|.+=| +.++++
T Consensus 127 y~~~~~~~~~~g~~~---~~v~~~~~~~~~~d~~~l~~~i~~~-----~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~ 198 (391)
T PRK08361 127 FVCYVEDAKIAEAKP---IRIPLREENEFQPDPDELLELITKR-----TRMIVINYPNNPTGATLDKEVAKAIADIAEDY 198 (391)
T ss_pred CcccHHHHHHcCCEE---EEEecCCccCCCCCHHHHHHhcccc-----cEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHc
Confidence 456778888999876 9999975 4689999999998753 235555668999999988 556553
Q ss_pred CCCceeccccccc-c-----ceeeee-cCC----Cccccccc-----cccc------------cCCcccCCCCcccHHHH
Q psy13453 91 NGPLKVGGVLRRV-Y-----SSCLVP-RGQ----KSLRTTVL-----FHFL------------FQHWQIPLGRRFRALKL 142 (764)
Q Consensus 91 ~~wlHVDa~l~~~-y-----~s~ll~-rd~----~~l~~~~s-----~~~d------------~~d~tle~SRr~~ALkl 142 (764)
++++++|.+.... | .+..-. .+. .++...|. ..+- ...++.. ....+..
T Consensus 199 ~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~---~~~~~~q 275 (391)
T PRK08361 199 NIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTGWRLGFVIAPEQVIKDMIKLHAYIIG---NVASFVQ 275 (391)
T ss_pred CeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCcHhhhhhhccCHHHHHHHHHHHhhhcc---CCChHHH
Confidence 7899999854211 0 010000 000 00000000 0000 0000000 1122223
Q ss_pred HHHHHHc--cH--HHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEE-EeeccccccccccccCccCCccHHHH
Q psy13453 143 WMTLRSY--GL--KGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCF-RLKVRFWDKLDNLFGTISFGDNDLNK 217 (764)
Q Consensus 143 WatL~~l--G~--eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~F-ry~P~~~~~~~~~~~~~~~~~d~~n~ 217 (764)
+++...+ |. +.++++.+..-+..+.+.+.+++.+++++ ..|+-+..+| +..+. ..+ ..
T Consensus 276 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~-~~p~g~~~~~~~l~~~--------------~~~--~~ 338 (391)
T PRK08361 276 IAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMPHIKV-FEPKGAFYVFANIDET--------------GMS--SE 338 (391)
T ss_pred HHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCCee-cCCCEEEEEEEECCCC--------------CCC--HH
Confidence 3333333 21 23455555556667778899998888774 5566555444 33210 111 13
Q ss_pred HHHHHHHh-cCcEEEEecee--CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13453 218 AVYDRIIA-RKVIYIVKGSF--QDRLFMRFAICSSQTEESDVQLGWNEIRTATE 268 (764)
Q Consensus 218 ~L~~~L~~-~G~~~vs~t~l--~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~ 268 (764)
++.++|.+ .|..+.....+ .+..++|++++. .+++++..++.|+++.+
T Consensus 339 ~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~---~~~~l~~al~~l~~~l~ 389 (391)
T PRK08361 339 DFAEWLLEKARVVVIPGTAFGKAGEGYIRISYAT---SKEKLIEAMERMEKALE 389 (391)
T ss_pred HHHHHHHHhCCEEEcCchhhCCCCCCEEEEEecC---CHHHHHHHHHHHHHHHh
Confidence 56666654 67755443332 345789999884 46678888777776543
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.032 Score=64.39 Aligned_cols=172 Identities=13% Similarity=-0.006 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
+..+.++.+.|++++..+- ....|+.+|||||-.|++.||.....+ +.. .++-+|.....-
T Consensus 93 ~~~~~~lAe~L~~~~p~~~---------~~v~f~~sGSEAve~AlKlAr~~~~~~-g~~---------~r~~Ii~~~~~Y 153 (461)
T PRK07482 93 TEASITLSKRIIDRAPAGM---------SKVYYGLSGSDANETQIKLVWYYNNVL-GRP---------EKKKIISRWRGY 153 (461)
T ss_pred CHHHHHHHHHHHHhCCCCc---------CEEEEeCchHHHHHHHHHHHHHHHHhc-CCC---------CCceEEEecCcc
Confidence 4566667778888763111 235799999999999999999764221 100 012233334444
Q ss_pred chhHHHHHHhCC------------CceEEEecCCCCc-------------ccHHHHHHHHHHhhhcCCCceEEEEeeccC
Q psy13453 641 NSSVEKSAIIGD------------VPVRQLRSDDNGV-------------LRGDALLTAVKEDLAKGLIPCCLIATLGTT 695 (764)
Q Consensus 641 H~Sv~kAa~~lG------------l~v~~Vp~d~~g~-------------md~~~Le~~I~~~~~~G~~p~~VvataGTT 695 (764)
|=.-.-+..+.| -.+..+|.....+ -++++|++.|.+. .+..+.+|++---..
T Consensus 154 HG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~iAAvi~EPvqg 231 (461)
T PRK07482 154 HGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAE--GPDTIAAFIAEPVLG 231 (461)
T ss_pred CCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHhc--CCCcEEEEEECCccC
Confidence 432222222111 1234443321111 1467778777532 122345555443333
Q ss_pred Ccccc----ccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCC
Q psy13453 696 GTCAF----DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLV 756 (764)
Q Consensus 696 ~~Gai----Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~ 756 (764)
..|.+ +=+++|+++|++||+.|++|-.+.|+-....-+....-|+ ..|-+++ -|.++.
T Consensus 232 ~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv-~PDiv~~--gKgl~g 293 (461)
T PRK07482 232 TGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGI-EPDLITV--AKGLTS 293 (461)
T ss_pred CCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhcCC-CCCEEEE--cccccc
Confidence 33444 3588899999999999999999888644333223333466 4787776 566643
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.017 Score=72.65 Aligned_cols=173 Identities=12% Similarity=-0.029 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
....+..+.|++++..+- ....|+++|||||..|++.||.... + +.+|.....-|
T Consensus 624 ~~~~elae~L~~~~p~~~---------~~v~f~~SGsEA~e~AlklAr~~tg-r---------------~~ii~~~~~yH 678 (972)
T PRK06149 624 AAVAEFSERLAALAPDGL---------DTVFLVNSGSEANDLAIRLAWAASG-R---------------RDVVSVLEAYH 678 (972)
T ss_pred HHHHHHHHHHHHhCCCCc---------CEEEEeCCchHHHHHHHHHHHHhcC-C---------------CeEEEEeCCCC
Confidence 344556667777762111 2468999999999999999997621 1 12444555555
Q ss_pred hhHHHHHHhC-----------CC--ceEEEecCCCCc-----cc-----HHHHHHHHHHhhhcCCCceEEEEeeccCCcc
Q psy13453 642 SSVEKSAIIG-----------DV--PVRQLRSDDNGV-----LR-----GDALLTAVKEDLAKGLIPCCLIATLGTTGTC 698 (764)
Q Consensus 642 ~Sv~kAa~~l-----------Gl--~v~~Vp~d~~g~-----md-----~~~Le~~I~~~~~~G~~p~~VvataGTT~~G 698 (764)
=...-+..+. .. .+..++.....+ -+ .+++++.++...+.+..+.+|++---....|
T Consensus 679 G~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG 758 (972)
T PRK06149 679 GWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRGLAGFICEPVYGNAG 758 (972)
T ss_pred CcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcccccCCC
Confidence 2211111110 00 234444322111 12 3566666765444455566666544334457
Q ss_pred cccc----HHHHHHHHHhcCCEEEEeccccccccccchh-hhhhcCCCcccEEEEcCCccCCCCcCcee
Q psy13453 699 AFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEY-AHLKRGLEYVDSFDFNTHKWLLVNFDCSA 762 (764)
Q Consensus 699 aiDp----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~-r~~l~gie~aDSit~d~HK~l~~P~~~g~ 762 (764)
.+-+ +++|.++|++||+.+++|-.+.|+-..-..+ ...-.|+ ..|-+|+ -|.++.-+..|+
T Consensus 759 ~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv-~PDivt~--gK~lg~G~Pl~a 824 (972)
T PRK06149 759 GIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGV-VPDIITM--AKGMGNGHPLGA 824 (972)
T ss_pred cccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCC-CCCEEEe--cccccCCeeeEE
Confidence 7777 9999999999999999999986542222111 1111355 4787755 676664333444
|
|
| >KOG0258|consensus | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.011 Score=64.86 Aligned_cols=149 Identities=17% Similarity=0.139 Sum_probs=103.8
Q ss_pred cCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCcccccc
Q psy13453 550 IGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIR 629 (764)
Q Consensus 550 n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~ 629 (764)
..+.|..|.....+-+.|.+.+.+-=|.|.+ +.+.++|+|+|.|..+-|.+-... + ..
T Consensus 105 s~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~-------p~dI~LT~GAS~ai~~il~l~~~~--~---~~---------- 162 (475)
T KOG0258|consen 105 SLGAYSDSQGVPGVRKHVAEFIERRDGIPAD-------PEDIFLTTGASPAIRSILSLLIAG--K---KT---------- 162 (475)
T ss_pred cccccccccCChhHHHHHHHHHHhccCCCCC-------HHHeeecCCCcHHHHHHHHHHhcC--C---CC----------
Confidence 6678888888888888888888887786654 357889999999976655443221 1 11
Q ss_pred CceEEEecCCcchhHHHH-HHhCCCceE--EEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccH
Q psy13453 630 NKLVAYTSDQSNSSVEKS-AIIGDVPVR--QLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNL 703 (764)
Q Consensus 630 ~~~vi~~S~~aH~Sv~kA-a~~lGl~v~--~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl 703 (764)
. |+ ...-.|-...| ...+|...+ .+.-..+|.+|.++|++.+++.+ +|..|-++|+.-.-+.||.+ ..|
T Consensus 163 -G--vl-iPiPQYPLYsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~-k~i~~r~lvvINPGNPTGqvls~e~i 237 (475)
T KOG0258|consen 163 -G--VL-IPIPQYPLYSATISLLGGTQVPYYLDEESNWSLDVAELERSVDEAR-KGINPRALVVINPGNPTGQVLSEENI 237 (475)
T ss_pred -c--eE-eecCCCchhHHHHHHhCCcccceeeccccCCCCCHHHHHHHHHHHh-ccCCceEEEEECCCCccchhhcHHHH
Confidence 1 11 12333333333 344555433 33334689999999999999988 78777666666666778988 589
Q ss_pred HHHHHHHHhcCCEEEEeccccc
Q psy13453 704 EELGPICQEYNIWLHVDAAYAG 725 (764)
Q Consensus 704 ~eIa~i~~~~glwLHVDaA~Gg 725 (764)
++|..+|.++++.|.-|-.|=-
T Consensus 238 e~i~~fa~~~~l~llaDEVYQ~ 259 (475)
T KOG0258|consen 238 EGIICFAAEEGLVLLADEVYQD 259 (475)
T ss_pred HHHHHHHHHcCeEEechHHHHh
Confidence 9999999999999999987543
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.004 Score=69.52 Aligned_cols=154 Identities=18% Similarity=0.213 Sum_probs=92.6
Q ss_pred HHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCceecccc
Q psy13453 26 KATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKVGGVL 100 (764)
Q Consensus 26 KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHVDa~l 100 (764)
+.+..+|+.. +.++.+ |+++++++|++. +-+++...++.++|.+-|++++++ +++++||...
T Consensus 98 ~~~~~~g~~~---~~v~~~-----d~~~l~~~i~~~-----~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~ 164 (369)
T cd00614 98 RLLPKLGIEV---TFVDPD-----DPEALEAAIKPE-----TKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTF 164 (369)
T ss_pred HHHhhcCeEE---EEeCCC-----CHHHHHHhcCCC-----CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCC
Confidence 4455677655 677665 588999988642 224556778889999999999886 8899999964
Q ss_pred cccc-------c-eeeeecCCCcccc-------cccccc-c----cCCcccCCCCcccHHHHHHHHHHccHHHHHHHHHH
Q psy13453 101 RRVY-------S-SCLVPRGQKSLRT-------TVLFHF-L----FQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRK 160 (764)
Q Consensus 101 ~~~y-------~-s~ll~rd~~~l~~-------~~s~~~-d----~~d~tle~SRr~~ALklWatL~~lG~eGy~~~i~~ 160 (764)
..++ + -+++..-.+.+.. .....- + ...+.-..+-....+..|+.++.+ +.+..++++
T Consensus 165 ~~~~~~~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l--~tl~~r~~~ 242 (369)
T cd00614 165 ATPYLQRPLELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGL--KTLPLRMER 242 (369)
T ss_pred cchhcCChhhhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCC--CCHHHHHHH
Confidence 2111 0 0111111111110 000000 0 000000011123456677776655 567788999
Q ss_pred HHHHHHHHHHHHhcCCCeEEeCCC-----------------CceeEEEEee
Q psy13453 161 HISLAKKFADLVEQDDRFELVCPP-----------------SMGLVCFRLK 194 (764)
Q Consensus 161 ~i~lA~~l~~~I~~~p~~ell~~P-----------------~l~iV~Fry~ 194 (764)
..++|+++++.|+++|.++-+.-| .-++++|...
T Consensus 243 ~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~ 293 (369)
T cd00614 243 HSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELK 293 (369)
T ss_pred HHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeC
Confidence 999999999999999987655444 2567888764
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.02 Score=63.79 Aligned_cols=211 Identities=9% Similarity=-0.010 Sum_probs=116.2
Q ss_pred eHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-------CCCce
Q psy13453 23 ESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-------NGPLK 95 (764)
Q Consensus 23 Sv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-------~~wlH 95 (764)
.....++..|+.. +.||+++++.+|+++|++++++.. -+++-+-+..++|.+=|.+++.+ +.++.
T Consensus 124 ~~~~~~~~~g~~~---~~v~~~~~~~~~~~~l~~~~~~~~-----~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~ii 195 (371)
T PRK05166 124 LHEDYPTMMGARV---ERVTVTPDLGFDLDALCAAVARAP-----RMLMFSNPSNPVGSWLTADQLARVLDATPPETLIV 195 (371)
T ss_pred HHHHHHHHcCCeE---EEeecCCCCCCCHHHHHHhhhcCC-----CEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEE
Confidence 4567788899877 999999889999999999987532 24545778899999887766443 56777
Q ss_pred eccccccc-cc----eee-eecC--CCc-cccccccccc-------c---CCc-------ccCCCCcccHHHHHHHHHHc
Q psy13453 96 VGGVLRRV-YS----SCL-VPRG--QKS-LRTTVLFHFL-------F---QHW-------QIPLGRRFRALKLWMTLRSY 149 (764)
Q Consensus 96 VDa~l~~~-y~----s~l-l~rd--~~~-l~~~~s~~~d-------~---~d~-------tle~SRr~~ALklWatL~~l 149 (764)
+|...... +. +.+ +... ... .-.+||-.+. | .+. .+...-....+...+++..+
T Consensus 196 ~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~l 275 (371)
T PRK05166 196 VDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSDPELVGLLDRVRTPFNVNGAAQAAALAAL 275 (371)
T ss_pred EECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCCHHHHHHHHHhccCCCCCHHHHHHHHHHh
Confidence 78753100 10 100 0000 000 0011110000 0 000 00000012223333333333
Q ss_pred c-HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCc
Q psy13453 150 G-LKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKV 228 (764)
Q Consensus 150 G-~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~ 228 (764)
- .+-+++..+...+..+++.+.|++. ++.+ .++.-+-+-++.. .+ ..++.+.|.++|.
T Consensus 276 ~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~-~p~~g~fl~~~~~-----------------~~--~~~l~~~l~~~gi 334 (371)
T PRK05166 276 DDEEHLAKGVALALAERERLKKELAEM-GYRI-APSRANFLFFDAR-----------------RP--ASAVAEALLRQGV 334 (371)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHC-cCee-CCCcCCEEEEeCC-----------------CC--HHHHHHHHHHCCe
Confidence 2 2335555666667777888999987 6764 4454433222210 01 2468888888887
Q ss_pred EEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 229 IYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 229 ~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
.+.....-....++|++++. +++.+.+.+.++++
T Consensus 335 ~v~p~~~~~~~~~iRi~~~~----~~~~~~l~~~l~~i 368 (371)
T PRK05166 335 IVKPWKQPGFETFIRVSIGS----PEENDHFVAALDKV 368 (371)
T ss_pred EEecCCCCCCCCeEEEEcCC----HHHHHHHHHHHHHH
Confidence 55443322336789999884 55567777666654
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.053 Score=62.72 Aligned_cols=170 Identities=16% Similarity=0.051 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
+....++.+.|++++..+- ....|+.+|||||-.|++.||.....+ +..+ ++-+|.....-
T Consensus 89 ~~~~~~lae~L~~~~p~~~---------~~v~f~~sGsEAve~AlKlAr~~~~~~-g~t~---------r~~ii~~~~~y 149 (466)
T PRK07030 89 HEPVIELSERLVKITPPGL---------SRCFYADNGSSAIEVALKMSFHYWRNR-GKPR---------KKRFVTLTNSY 149 (466)
T ss_pred CHHHHHHHHHHHHhCCCCc---------CEEEEeCCcHHHHHHHHHHHHHHHHHh-CCCC---------CcEEEEECCCc
Confidence 4556667778888763111 246899999999999999999864322 1000 12244455555
Q ss_pred chhHHHHHHhCCC------------ceEEEecCCCCc------------ccHHHHHHHHHHhhhcCCCceEEEEee-ccC
Q psy13453 641 NSSVEKSAIIGDV------------PVRQLRSDDNGV------------LRGDALLTAVKEDLAKGLIPCCLIATL-GTT 695 (764)
Q Consensus 641 H~Sv~kAa~~lGl------------~v~~Vp~d~~g~------------md~~~Le~~I~~~~~~G~~p~~Vvata-GTT 695 (764)
|=...-+..+.|. .+..+|.....+ -+++.|++.|.+ .+....+|++-- -..
T Consensus 150 HG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~---~~~~iAAvi~EP~iqg 226 (466)
T PRK07030 150 HGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAE---HHDEIAAVIVEPLIQG 226 (466)
T ss_pred CcccHHHHhccCCccccccCCccCCCCEEcCCCCccccccCCCHHHHHHHHHHHHHHHHHh---CCCceEEEEEeccccc
Confidence 6444334333221 234444322111 135667777753 233455555443 123
Q ss_pred Ccccc----ccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCC
Q psy13453 696 GTCAF----DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLL 755 (764)
Q Consensus 696 ~~Gai----Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~ 755 (764)
..|.+ +=+++|+++|++||+.|++|-.+.|+-....-+....-|+ ..|-+++ -|.++
T Consensus 227 ~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv-~PDiv~~--gKgl~ 287 (466)
T PRK07030 227 AGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGI-RPDFLCL--SKALT 287 (466)
T ss_pred CCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccchHHHhcCC-CCCEEee--ehhcc
Confidence 33444 4588999999999999999999877533322222223356 4777777 56544
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.033 Score=63.69 Aligned_cols=168 Identities=12% Similarity=-0.023 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
....++.+.|++++.-+- ....|+.+|||||..|++.||.....+ + .+ . +-+|.....-|
T Consensus 86 ~~~~~la~~L~~~~p~~~---------~~v~f~~SGsEAve~AlklAr~~~~~~-g-~~--------r-~kii~~~~~yH 145 (428)
T PRK07986 86 PPAIELCRKLVAMTPQPL---------ECVFLADSGSVAVEVAMKMALQYWQAK-G-EP--------R-QRFLTLRHGYH 145 (428)
T ss_pred HHHHHHHHHHHhhCCCCc---------CEEEEeCCcHHHHHHHHHHHHHHHHhc-C-CC--------C-cEEEEECCCcC
Confidence 445566777777764211 246899999999999999999763221 0 00 1 12344444455
Q ss_pred hhHHHHHHhCC-----------C--ceEEEecCCC-----C-cccHHHHHHHHHHhhhcCCCceEEEEeec-cCCccc--
Q psy13453 642 SSVEKSAIIGD-----------V--PVRQLRSDDN-----G-VLRGDALLTAVKEDLAKGLIPCCLIATLG-TTGTCA-- 699 (764)
Q Consensus 642 ~Sv~kAa~~lG-----------l--~v~~Vp~d~~-----g-~md~~~Le~~I~~~~~~G~~p~~VvataG-TT~~Ga-- 699 (764)
=...-+..+.| . .+..+|.... . .=|.++|++.|++. +....+|+.--- ....|.
T Consensus 146 G~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~---~~~iaavi~Epi~~g~gg~~~ 222 (428)
T PRK07986 146 GDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAH---RHEIAAVILEPIVQGAGGMRI 222 (428)
T ss_pred CCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHhC---CCcEEEEEEechhcCcCCccc
Confidence 33222222211 1 2334443211 1 12567788877532 223334443221 222233
Q ss_pred --cccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCC
Q psy13453 700 --FDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLL 755 (764)
Q Consensus 700 --iDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~ 755 (764)
-+.+++|+++|++||+.|++|-++.|+-....-+.....|+ ..|-++ +-|.++
T Consensus 223 ~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~~~~gv-~PDi~t--~gK~l~ 277 (428)
T PRK07986 223 YHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGI-APDILC--LGKALT 277 (428)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeeeecccCC-CCCEEE--echhhh
Confidence 24599999999999999999999866311111111112355 357665 467654
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.062 Score=62.03 Aligned_cols=170 Identities=14% Similarity=0.068 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
+..+.++.+.|++++..+- ....|+.+|||||-.|++.||.....+ +..+ ++-+|.....-
T Consensus 98 ~~~~~~lae~L~~~~p~~~---------~~v~f~~SGseAve~AlklAr~~~~~~-g~tg---------r~~ii~~~~~Y 158 (460)
T PRK06916 98 NVPSILLAEKLIEVVPEGL---------KKVFYSDSGATAVEIAIKMAFQYWQNK-GKPK---------KQRFVTLKNAY 158 (460)
T ss_pred CHHHHHHHHHHHHhCCCCC---------CEEEEeCCcHHHHHHHHHHHHHHHHhc-CCCC---------CcEEEEECCcC
Confidence 4455667777888763211 246899999999999999999864321 1000 12245555556
Q ss_pred chhHHHHHHhCCC------------ceEEEecCCCC------------cccHHHHHHHHHHhhhcCCCceEEEEee-ccC
Q psy13453 641 NSSVEKSAIIGDV------------PVRQLRSDDNG------------VLRGDALLTAVKEDLAKGLIPCCLIATL-GTT 695 (764)
Q Consensus 641 H~Sv~kAa~~lGl------------~v~~Vp~d~~g------------~md~~~Le~~I~~~~~~G~~p~~Vvata-GTT 695 (764)
|=...-+..+.|- .+..+|..... .-+++.+++.|+. .+....+|++-- -..
T Consensus 159 HG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~iAAvi~EP~iqg 235 (460)
T PRK06916 159 HGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKE---KHEEIAAIIVEPLVQG 235 (460)
T ss_pred CcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHh---CCCcEEEEEEeccccC
Confidence 6544444443321 23445432100 1245667777753 223445555432 122
Q ss_pred Ccccc----ccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCC
Q psy13453 696 GTCAF----DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLL 755 (764)
Q Consensus 696 ~~Gai----Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~ 755 (764)
..|.+ +=++++.++|++||+.|++|-.+-|+-....-+....-|+ ..|-+++ -|.++
T Consensus 236 ~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~a~~~~gv-~PDiv~~--gK~l~ 296 (460)
T PRK06916 236 AGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENV-TPDIMTA--GKGLT 296 (460)
T ss_pred CCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchhhHHHhcCC-CCCeeee--ehhhh
Confidence 23433 4588999999999999999999876423222222222355 4676665 56444
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.058 Score=60.06 Aligned_cols=219 Identities=6% Similarity=-0.020 Sum_probs=121.3
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCc
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPL 94 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wl 94 (764)
.|.+..+++.+.|... +.++ .+|++++++.|.+... .++-+++-..-.+++|.+.|++++++ ++|+
T Consensus 126 ~~~~~~~~~~~~g~~~---~~~~-----~~d~~~l~~~l~~~~~-~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~~~~~l 196 (385)
T TIGR01825 126 NHASIIDGLRLTKATK---KIYK-----HADMDDLDRVLRENPS-YGKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVT 196 (385)
T ss_pred ccHHHHHHHHhcCCce---EEeC-----CCCHHHHHHHHHhhcc-CCCeEEEEecCCcCCCCccCHHHHHHHHHHhCCEE
Confidence 5777888888877655 4332 6899999999886432 12223333334577899999999876 8899
Q ss_pred eeccccccc-c---c--ee--e-eecCC----Ccccccccc--cc-----c-------cC-CcccCCCC-cccHHHHHHH
Q psy13453 95 KVGGVLRRV-Y---S--SC--L-VPRGQ----KSLRTTVLF--HF-----L-------FQ-HWQIPLGR-RFRALKLWMT 145 (764)
Q Consensus 95 HVDa~l~~~-y---~--s~--l-l~rd~----~~l~~~~s~--~~-----d-------~~-d~tle~SR-r~~ALklWat 145 (764)
.+|.+.... + + +. + +..+. .++...+.. .+ + .. .+...+.- ......+.++
T Consensus 197 i~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a 276 (385)
T TIGR01825 197 YVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIGVVGGYAAGHKELIEYLKNRARPFLFSTAQPPAVVAALAAA 276 (385)
T ss_pred EEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHhhcCCCEEecCHHHHHHHHHhCccccccCCCCHHHHHHHHHH
Confidence 999964211 1 0 00 0 00010 011111110 00 0 11 12211111 1111233334
Q ss_pred HHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHh
Q psy13453 146 LRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIA 225 (764)
Q Consensus 146 L~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~ 225 (764)
+..+-. ..+..++..+..+++.+.|++. ++++. .|+.+++.+...+ ......+.++|.+
T Consensus 277 l~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~-----------------~~~~~~~~~~L~~ 335 (385)
T TIGR01825 277 VDELQR--SPELMERLWDNTRFFKAGLGKL-GYDTG-GSETPITPVVIGD-----------------EKAAQEFSRRLFD 335 (385)
T ss_pred HHHHhc--CHHHHHHHHHHHHHHHHHHHHc-CCCCC-CCCCCEEEEEECC-----------------HHHHHHHHHHHHH
Confidence 433311 2356667778899999999875 77764 3555566654321 0112568888888
Q ss_pred cCcEEEEece---eCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 226 RKVIYIVKGS---FQDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 226 ~G~~~vs~t~---l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
+|........ -.+...+|++ .+-.+++++++.+++.++++.++
T Consensus 336 ~gi~v~~~~~~~~~~~~~~iRi~-~~~~~~~e~i~~~~~~l~~~~~~ 381 (385)
T TIGR01825 336 EGIFAQSIVFPTVPRGTARIRNI-PTAEHTKDDLDQALDAYEKVGKE 381 (385)
T ss_pred CCcEEcccCCCCCCCCCceEEEE-EcCCCCHHHHHHHHHHHHHHHHH
Confidence 8875422111 1234678884 34457899999999999887643
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.013 Score=65.79 Aligned_cols=220 Identities=10% Similarity=0.021 Sum_probs=121.5
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCC-CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCC
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPD-SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGP 93 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~-~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~w 93 (764)
.|.+...++..+|... +.|+++. ++.+|+++|+++|.+.+ -+++ ++-.+|..-|++++++ +++
T Consensus 82 ~~~~~~~~~~~~G~~~---v~vd~~~~~~~~d~~~l~~~i~~~t-----kav~---~~~~~G~~~d~~~i~~~a~~~gi~ 150 (379)
T PRK11658 82 TWVSTLNMIVLLGATP---VMVDVDRDTLMVTPEAIEAAITPRT-----KAII---PVHYAGAPADLDAIRAIGERYGIP 150 (379)
T ss_pred cHHHHHHHHHHcCCEE---EEEecCCCcCCcCHHHHHHhcccCC-----eEEE---EeCCCCCcCCHHHHHHHHHHcCCe
Confidence 3456667888889887 9999985 56799999999997532 1333 3334788888888765 889
Q ss_pred ceeccccc--ccc-------------------------ceeeeecCCCccccc--ccc---ccccCCc------------
Q psy13453 94 LKVGGVLR--RVY-------------------------SSCLVPRGQKSLRTT--VLF---HFLFQHW------------ 129 (764)
Q Consensus 94 lHVDa~l~--~~y-------------------------~s~ll~rd~~~l~~~--~s~---~~d~~d~------------ 129 (764)
+++|++.. ..| +++++..+++..... +.. ..+..+.
T Consensus 151 vi~D~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l~~g~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 230 (379)
T PRK11658 151 VIEDAAHAVGTYYKGRHIGARGTAIFSFHAIKNITCAEGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVL 230 (379)
T ss_pred EEEECCCccCCeECCeecCCCCCEEEeCCCCCcCcccCceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcceee
Confidence 99999531 111 122332222211100 000 0000000
Q ss_pred ccCCCCcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC------ceeEEEEeeccccccccc
Q psy13453 130 QIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS------MGLVCFRLKVRFWDKLDN 203 (764)
Q Consensus 130 tle~SRr~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~------l~iV~Fry~P~~~~~~~~ 203 (764)
.+...-+.. .+=+++-..-.+++.+..++..++++++.+.|++.+. +.+..|. ..+.+|+..+..
T Consensus 231 ~~G~n~~~~--~l~AAl~~~ql~~l~~~~~~r~~~a~~~~~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------ 301 (379)
T PRK11658 231 TPGYKYNLA--DINAAIALVQLAKLEALNARRREIAARYLQALADLPF-QPLSLPAWPHQHAWHLFIIRVDEER------ 301 (379)
T ss_pred ccccccCcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-ccCcCCCCCCceeEEEEEEEECCcc------
Confidence 000001122 2234444555688999999999999999999998864 3333222 134445542110
Q ss_pred cccCccCCccHHHHHHHHHHHhcCcEEE-EeceeC-------------C----eeEEEEec--cCCCCCHHHHHHHHHHH
Q psy13453 204 LFGTISFGDNDLNKAVYDRIIARKVIYI-VKGSFQ-------------D----RLFMRFAI--CSSQTEESDVQLGWNEI 263 (764)
Q Consensus 204 ~~~~~~~~~d~~n~~L~~~L~~~G~~~v-s~t~l~-------------g----~~~LRi~v--~np~Tt~e~i~~~l~~l 263 (764)
.+. -..++.++|.+.|...- ....++ . ..+-|... +++..++++++.+++.|
T Consensus 302 ------~~~--~r~~~~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~~~i 373 (379)
T PRK11658 302 ------CGI--SRDALMEALKERGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVITAL 373 (379)
T ss_pred ------ccC--CHHHHHHHHHHCCCCCcccCcCcccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHH
Confidence 001 12467778887774210 000110 0 11123211 47889999999999999
Q ss_pred HHHH
Q psy13453 264 RTAT 267 (764)
Q Consensus 264 ~~~~ 267 (764)
+++.
T Consensus 374 ~~~~ 377 (379)
T PRK11658 374 QQIA 377 (379)
T ss_pred HHHH
Confidence 8753
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.06 Score=61.91 Aligned_cols=174 Identities=13% Similarity=0.027 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
+..+.++.+.|++++.-+.. ....|+.+|||||..|++.||... .+ +.+|.....-
T Consensus 96 ~~~~~~la~~L~~~~p~~~~--------~~v~f~~sGseA~e~AlklAr~~t-gr---------------~~ii~~~~~y 151 (451)
T PRK06918 96 YEPYIELAEKLAALAPGSFD--------KKVLFLNSGAEAVENAVKIARKYT-KR---------------QGIISFSRGF 151 (451)
T ss_pred cHHHHHHHHHHHHhCCCCCC--------CEEEEcCCcHHHHHHHHHHHHHHh-CC---------------CcEEEECCCc
Confidence 45566777788888742110 146899999999999999999752 11 1133334344
Q ss_pred chhHHHHHHhCC-------------CceEEEecCC-----CCccc--------HHHHHHHHHHhhhcCCCceEEEEeecc
Q psy13453 641 NSSVEKSAIIGD-------------VPVRQLRSDD-----NGVLR--------GDALLTAVKEDLAKGLIPCCLIATLGT 694 (764)
Q Consensus 641 H~Sv~kAa~~lG-------------l~v~~Vp~d~-----~g~md--------~~~Le~~I~~~~~~G~~p~~VvataGT 694 (764)
|=...-+..+.| -.+..+|... .+ +. .+.+++.+.... .+....+|++---.
T Consensus 152 HG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~iAavi~EPi~ 229 (451)
T PRK06918 152 HGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEG-LTEEQYDDFMIEEFKNFFISEV-APETIAAVVMEPVQ 229 (451)
T ss_pred CccchhhhhhcCCCccccccCCCCCCCcEEcCCCcccccccc-CchHHHHHHHHHHHHHHHHhhc-CCCceEEEEECccc
Confidence 433222222211 1234444321 11 11 223444442211 22234455443333
Q ss_pred CCcccc----ccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 695 TGTCAF----DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 695 T~~Gai----Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
...|.+ +-+++|+++|++||+||+.|-.|.+.......+....-++ ..|-+ .+-|.++.-+.+|++
T Consensus 230 g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v-~pDi~--t~sK~l~~G~pig~v 299 (451)
T PRK06918 230 GEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDV-VPDLI--TVSKSLGAGVPISGV 299 (451)
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCC-CCCEE--eeehhhcCCCccEEE
Confidence 333433 3489999999999999999999887533221111111133 35644 567877644445543
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.036 Score=64.80 Aligned_cols=224 Identities=9% Similarity=0.013 Sum_probs=128.8
Q ss_pred eeHHHHHhhcCCCCCCeEEecCCC--CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccC---chhhhc-----C
Q psy13453 22 YESFKATHSLSGTPDQVRLSGLPD--SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQS---LNAPVS-----N 91 (764)
Q Consensus 22 YSv~KAa~~LGl~~~~v~~Vpvd~--~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDp---i~~ia~-----~ 91 (764)
.++..++.+.|... +.+|+++ ++.+|+++|++++... +-++|-+-|+-+||.+=+ +.++++ +
T Consensus 243 ~~y~~~~~~~g~~~---v~~~~~~~~~~~~d~~~l~~~~~~~-----~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~ 314 (517)
T PRK13355 243 PLWTACVNLAGGTA---VHYRCDEQSEWYPDIDDIRSKITSR-----TKAIVIINPNNPTGALYPREVLQQIVDIAREHQ 314 (517)
T ss_pred cCHHHHHHHCCCEE---EEeecCcccCCCCCHHHHHHhcCcC-----ceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcC
Confidence 34566788899876 8889874 5789999999988653 224555568999999877 455543 7
Q ss_pred CCceecccccc------ccceee-eecCCCcc-ccccc---------ccccc--CCc----------c-cCCCC-cccHH
Q psy13453 92 GPLKVGGVLRR------VYSSCL-VPRGQKSL-RTTVL---------FHFLF--QHW----------Q-IPLGR-RFRAL 140 (764)
Q Consensus 92 ~wlHVDa~l~~------~y~s~l-l~rd~~~l-~~~~s---------~~~d~--~d~----------t-le~SR-r~~AL 140 (764)
+|+-+|.+... .+.++. +..+...+ -.+|| ..|-. ++. . +...+ ....+
T Consensus 315 ~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 394 (517)
T PRK13355 315 LIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSHMIAGYRIGWMILSGNKRIAKDYIEGLNMLANMRLCSNVP 394 (517)
T ss_pred cEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEecchhhccCcccceEEEEeeCchhhHHHHHHHHHHHhcCcCCcChH
Confidence 88888875311 111100 00110000 00111 00100 100 0 01111 23445
Q ss_pred HHHHHHHHccH----HHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEE-EeeccccccccccccCccCCccHH
Q psy13453 141 KLWMTLRSYGL----KGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCF-RLKVRFWDKLDNLFGTISFGDNDL 215 (764)
Q Consensus 141 klWatL~~lG~----eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~F-ry~P~~~~~~~~~~~~~~~~~d~~ 215 (764)
..+++...++. +.|.+..++..+..+++.+.|+++|++++ .+|+-+..+| +..+.... ..+.
T Consensus 395 ~q~a~~~aL~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~-~~p~g~fy~~~~l~~~~~~-----------~~~~- 461 (517)
T PRK13355 395 AQSIVQTALGGHQSVKDYLVPGGRVYEQRELVYNALNAIPGISA-VKPKAAFYIFPKIDVKKFN-----------IHDD- 461 (517)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-CCCCeeeEEEeecCcccCC-----------CCCH-
Confidence 55666666632 22333334566777889999999888874 6788877777 33210000 0011
Q ss_pred HHHHHHHHHhcCcEEEEecee--CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 216 NKAVYDRIIARKVIYIVKGSF--QDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 216 n~~L~~~L~~~G~~~vs~t~l--~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
...+.+.|.+.|.+++-.+.+ .+..++|++++ +..+.+++.++.|.+..+.
T Consensus 462 ~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~~---~~~~~l~~a~~rl~~~~~~ 514 (517)
T PRK13355 462 EQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVYL---PRLEDLEDAMDRLADFFSY 514 (517)
T ss_pred HHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEeC---CCHHHHHHHHHHHHHHHHH
Confidence 134456677788876655544 35679999885 5678899988888887654
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0097 Score=65.69 Aligned_cols=145 Identities=14% Similarity=-0.002 Sum_probs=90.8
Q ss_pred HHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhH
Q psy13453 565 VLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV 644 (764)
Q Consensus 565 ~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv 644 (764)
..+.+++++.+|.++. ...++|+|+++++.. +.. .... .+ +++.+-+....
T Consensus 56 ~~L~~~ia~~~~~~~~--------~~I~i~~Gs~e~i~~-l~~----~~~~--------------g~--v~v~~P~y~~y 106 (339)
T PRK06959 56 DGLAACAARYYGAPDA--------AHVLPVAGSQAAIRA-LPA----LLPR--------------GR--VGIAPLAYSEY 106 (339)
T ss_pred HHHHHHHHHHhCCCCc--------ccEEECcCHHHHHHH-HHH----hcCC--------------Ce--EEEcCCCcHHH
Confidence 5677899999999641 257888998887542 221 1110 12 34455566667
Q ss_pred HHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHH---HHHhcCCEEEEec
Q psy13453 645 EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGP---ICQEYNIWLHVDA 721 (764)
Q Consensus 645 ~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~---i~~~~glwLHVDa 721 (764)
..+++..|.+++.||.+. +.+. +.. -+|+.+..++.||.+=+.+++.+ .|++++.|+.+|-
T Consensus 107 ~~~~~~~g~~~~~v~~~~------~~~~----~~~------~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DE 170 (339)
T PRK06959 107 APAFARHGHRVVPLDEAA------DTLP----AAL------THLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDE 170 (339)
T ss_pred HHHHHHCCCEEEeecccc------hhcc----ccC------CEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEC
Confidence 778899999998888764 2221 111 15677778999999966555554 4668899999999
Q ss_pred cccccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 722 AYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 722 A~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
+|.-+.. .+......+ -++ =-+.-++.|.++.|
T Consensus 171 ay~~~~~-~~s~~~~~~-~~~-vi~l~SfSK~~gl~ 203 (339)
T PRK06959 171 AFADTLP-AASLAAHTD-RPG-LVVLRSVGKFFGLA 203 (339)
T ss_pred CCccCCC-cccchhccC-CCC-EEEEecChhhcCCc
Confidence 9987431 121111111 111 13566899988755
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.01 Score=66.16 Aligned_cols=128 Identities=15% Similarity=0.081 Sum_probs=81.5
Q ss_pred HHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhH
Q psy13453 565 VLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV 644 (764)
Q Consensus 565 ~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv 644 (764)
.++.++|+++.+ .. .-.+|+.+|||||=.|++.||.+..+..+ .-+|.+...-|=--
T Consensus 87 ~~la~~L~~~s~-~~---------d~vff~NSGaEA~EaAiKlARk~~~~~~k-------------~~Iia~~nsFHGRT 143 (404)
T COG4992 87 AELAEKLVELSP-FA---------DRVFFCNSGAEANEAALKLARKYTGDPEK-------------SKIIAFENSFHGRT 143 (404)
T ss_pred HHHHHHHHhhCc-cc---------cEEEEcCCcHHHHHHHHHHHHHHcCCCCC-------------cEEEEEcCCcCCcc
Confidence 345567777775 12 23679999999999999999988651100 11233333333111
Q ss_pred HHHH---------HhCC-C--ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc----ccHHHHHH
Q psy13453 645 EKSA---------IIGD-V--PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF----DNLEELGP 708 (764)
Q Consensus 645 ~kAa---------~~lG-l--~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai----Dpl~eIa~ 708 (764)
.-+. .-++ + .++.||-+ |+++|+++|.+++. .|+.=--.-+.|.+ +=+.++++
T Consensus 144 ~galS~t~~~ky~~~F~Pl~~g~~~vpfn-----Di~al~~ai~~~ta------AvivEPIQGEgGV~~~~~~fl~~lr~ 212 (404)
T COG4992 144 LGALSATGQPKYRKGFGPLLPGFRHVPFN-----DIEALEAAIDEDTA------AVIVEPIQGEGGVIPAPPEFLKALRE 212 (404)
T ss_pred ceeeeccCChhhccCCCCCCCCceecCCC-----CHHHHHHHhccCeE------EEEEecccCCCCCCCCCHHHHHHHHH
Confidence 1111 1111 1 46677765 58999999988643 55443333344555 45888999
Q ss_pred HHHhcCCEEEEecccccc
Q psy13453 709 ICQEYNIWLHVDAAYAGS 726 (764)
Q Consensus 709 i~~~~glwLHVDaA~Gg~ 726 (764)
+|++||+.|+.|-.|.|.
T Consensus 213 lCd~~g~LLI~DEVQtG~ 230 (404)
T COG4992 213 LCDEHGALLILDEVQTGL 230 (404)
T ss_pred HHHHhCeEEEEeccccCC
Confidence 999999999999999885
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.09 Score=59.36 Aligned_cols=233 Identities=10% Similarity=0.016 Sum_probs=125.3
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhh---------CCCCcEEEEeeCCcccccccCchhhhc
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRK---------SFLCPMCSGYCGRTLHQDIQSLNAPVS 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~---------~G~~p~~VatAGTT~~G~iDpi~~ia~ 90 (764)
.|.|+..++.+.+... +.++.. |++.+++.++.... ..++.+++.-...-+.|.+-|++++.+
T Consensus 91 ~h~s~~~~~~l~~~~~---~~~~~~-----d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~l~~i~~ 162 (392)
T PLN03227 91 VNEALLVGVSLSRANV---RWFRHN-----DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKELVA 162 (392)
T ss_pred ccHHHHHHHHHcCCeE---EEeCCC-----CHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccCHHHHHH
Confidence 6888888887777543 555543 34455554443221 113344544444557899999998776
Q ss_pred -----CCCceecccccccc-c----e---ee-e-ecCC-Cccccccc-----------cccc---cC-----CcccCCCC
Q psy13453 91 -----NGPLKVGGVLRRVY-S----S---CL-V-PRGQ-KSLRTTVL-----------FHFL---FQ-----HWQIPLGR 135 (764)
Q Consensus 91 -----~~wlHVDa~l~~~y-~----s---~l-l-~rd~-~~l~~~~s-----------~~~d---~~-----d~tle~SR 135 (764)
++++++|..+...+ + + +. + .... +....+++ ..-+ .. .++..+
T Consensus 163 l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g~~gg~v~~~~~~~~~~~~~~~~~~~~~-- 240 (392)
T PLN03227 163 LKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFGSVGGMTVGSEEVVDHQRLSGSGYCFSA-- 240 (392)
T ss_pred HHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhhhccCcEEecCHHHHHHHHHhCcCccccC--
Confidence 88899998653111 0 0 00 0 0000 11111111 0001 00 011111
Q ss_pred cccHHHHHHHHHHc-cHHHHHHHHHHHHHHHHHHHHHHhcC--C-------CeEEeCCCCceeEEEEeeccccccccccc
Q psy13453 136 RFRALKLWMTLRSY-GLKGLQAYLRKHISLAKKFADLVEQD--D-------RFELVCPPSMGLVCFRLKVRFWDKLDNLF 205 (764)
Q Consensus 136 r~~ALklWatL~~l-G~eGy~~~i~~~i~lA~~l~~~I~~~--p-------~~ell~~P~l~iV~Fry~P~~~~~~~~~~ 205 (764)
....+-+|+++..+ ...-..+++++.-+++++|.+.|++. | ++.+...+..+++.+...+.....
T Consensus 241 ~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~----- 315 (392)
T PLN03227 241 SAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTNSSHPYALKLRNRLVITSDPISPIIYLRLSDQEATR----- 315 (392)
T ss_pred CCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCccccccccccccCCCCCCCEEEEEeCCHHHhh-----
Confidence 11134456665443 32224567888889999999999852 2 222233456677888663210000
Q ss_pred cCccCCccHHHHHHHHHHHhcCcEEEEec-------eeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy13453 206 GTISFGDNDLNKAVYDRIIARKVIYIVKG-------SFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVL 271 (764)
Q Consensus 206 ~~~~~~~d~~n~~L~~~L~~~G~~~vs~t-------~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~ 271 (764)
..+.+..-.++.+++.++|.+..... .+-.+..+|+++. ...|+++++++++.++++.+++.
T Consensus 316 ---~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~-~~~t~eei~~~~~~l~~~~~~~~ 384 (392)
T PLN03227 316 ---RTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCLRVVAN-ASHTREDIDKLLTVLGEAVEAIL 384 (392)
T ss_pred ---hhhhhhHHHHHHHHHHHCCCEEEecccccCCcCCCCCCceEEEEec-CCCCHHHHHHHHHHHHHHHHHHH
Confidence 00111233588899999998653211 1122467899655 44568899999999999987764
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.028 Score=69.33 Aligned_cols=171 Identities=10% Similarity=-0.049 Sum_probs=102.8
Q ss_pred eeHHHHHhhcCCCCCCeEEecCC--------CCCcccH--HHHHHHHHH----HhhCCCCc-EEEEeeCCcccccccCch
Q psy13453 22 YESFKATHSLSGTPDQVRLSGLP--------DSEWLAY--LTLRTIYES----FRKSFLCP-MCSGYCGRTLHQDIQSLN 86 (764)
Q Consensus 22 YSv~KAa~~LGl~~~~v~~Vpvd--------~~~rmD~--~aLe~~I~~----~~~~G~~p-~~VatAGTT~~G~iDpi~ 86 (764)
+.+.+.|.-.|+.. +.||++ +++.+|+ ++|++.+.+ ....+.++ +++-++-+..+|.+=||+
T Consensus 136 l~~~~~a~~~G~~v---~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~ 212 (805)
T PLN02724 136 LGIREYALEKGAAA---IAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLD 212 (805)
T ss_pred HHHHHHHHHcCCeE---EeccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHH
Confidence 34455555557665 888887 4555655 667776531 11112223 556888889999999998
Q ss_pred hh---hcC---------C-Cceecccc--------------------cc-----ccc-eeeeecCCC--ccccccc----
Q psy13453 87 AP---VSN---------G-PLKVGGVL--------------------RR-----VYS-SCLVPRGQK--SLRTTVL---- 121 (764)
Q Consensus 87 ~i---a~~---------~-wlHVDa~l--------------------~~-----~y~-s~ll~rd~~--~l~~~~s---- 121 (764)
.+ .+. . +++|||+. .| +.+ ++|++|.+. .+...+.
T Consensus 213 ~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~piDv~~~~~Dfl~~S~HK~~GgP~G~G~L~vr~~~~~~l~p~~~GGg~ 292 (805)
T PLN02724 213 LVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTSPPDLSRYPADFVVVSFYKIFGYPTGLGALLVRRDAAKLLKKKYFGGGT 292 (805)
T ss_pred HHHHHHHhcccccccCcceEEEeehhhhcCCCCCChhhcCCCEEEEecceeccCCCCceEEEEehhhhhhhcCCccCCCc
Confidence 76 221 2 47999931 12 222 456666421 1111110
Q ss_pred ccc-----ccC------CcccC-CCCc-ccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCC------CeEEeC
Q psy13453 122 FHF-----LFQ------HWQIP-LGRR-FRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDD------RFELVC 182 (764)
Q Consensus 122 ~~~-----d~~------d~tle-~SRr-~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p------~~ell~ 182 (764)
..+ ++. ...+| |+.. ...+.+-+++.++=.-|+.++-++..++++++.+.|++++ ++++++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg 372 (805)
T PLN02724 293 VAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYG 372 (805)
T ss_pred eEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcC
Confidence 000 010 01122 2332 2335677788887666888888999999999999999986 588887
Q ss_pred CC--------CceeEEEEeec
Q psy13453 183 PP--------SMGLVCFRLKV 195 (764)
Q Consensus 183 ~P--------~l~iV~Fry~P 195 (764)
+. ...+|+|.+..
T Consensus 373 ~~~~~~~~~~r~~ivsFnv~~ 393 (805)
T PLN02724 373 NHTFKLEFHIQGPIVTFNLKR 393 (805)
T ss_pred CCCCCCCcccccCEEEEEEEc
Confidence 53 46799998763
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.048 Score=62.91 Aligned_cols=165 Identities=16% Similarity=0.101 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
+..+.++.+.|+++++.+. ....|+++|||||-.|++.||... .+ ++ +|.....-
T Consensus 112 ~~~~~~lae~L~~~~p~~~---------~~v~f~~sGseAve~AlklAr~~t-gr--------------~~-ii~~~~~y 166 (459)
T PRK06082 112 NETAIECAEKLTEIAGGEL---------NRVLFAPGGTSAIGMALKLARHIT-GN--------------FK-VVSLWDSF 166 (459)
T ss_pred CHHHHHHHHHHHHhCCCCC---------CEEEECCCcHHHHHHHHHHHHHhc-CC--------------CE-EEEEeCCC
Confidence 4556667777888875321 246899999999999999999651 11 12 34445555
Q ss_pred chhHHHHHHhCCC------------ceEEEecCCCCc-----c------cHHHHHHHHHHhhhcCCCceEEEEeeccCCc
Q psy13453 641 NSSVEKSAIIGDV------------PVRQLRSDDNGV-----L------RGDALLTAVKEDLAKGLIPCCLIATLGTTGT 697 (764)
Q Consensus 641 H~Sv~kAa~~lGl------------~v~~Vp~d~~g~-----m------d~~~Le~~I~~~~~~G~~p~~VvataGTT~~ 697 (764)
|-...-+..+.|- .+..+|.....+ . +++.|++.|++ .+ ...+|+.---...-
T Consensus 167 HG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~---~~-~vAavIvEPv~g~g 242 (459)
T PRK06082 167 HGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEK---EG-GIGAFIAEAVRNTD 242 (459)
T ss_pred cCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhc---CC-CEEEEEECCccCCC
Confidence 6444444443321 234454321111 1 13557777753 12 23344432211111
Q ss_pred ccccc---HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 698 CAFDN---LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 698 GaiDp---l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
+.+-| +++|+++|++||+.|++|-.+.|+-....-+....-|+ ..|-++ +-|.++.-
T Consensus 243 ~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv-~PDiv~--~gKgl~gG 302 (459)
T PRK06082 243 VQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGI-EPDILC--IGKGLGGG 302 (459)
T ss_pred CcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhhCC-CCCEEE--ecccccCC
Confidence 22334 99999999999999999999887433221112222366 578776 57877643
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.069 Score=60.39 Aligned_cols=221 Identities=10% Similarity=0.023 Sum_probs=122.6
Q ss_pred eeHHHHHhhcCCCCCCeEEecCC-----CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchh---hhc---
Q psy13453 22 YESFKATHSLSGTPDQVRLSGLP-----DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNA---PVS--- 90 (764)
Q Consensus 22 YSv~KAa~~LGl~~~~v~~Vpvd-----~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~---ia~--- 90 (764)
....+.++.+|... +.||++ +++.+|+++|++++++. +.+++-+-++.++|.+=+.++ +++
T Consensus 137 ~~~~~~~~~~g~~v---~~v~~~~~~~~~~~~~d~~~l~~~~~~~-----~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~ 208 (405)
T PRK06207 137 FANRKLVEFFEGEM---VPVQLDYLSADKRAGLDLDQLEEAFKAG-----VRVFLFSNPNNPAGVVYSAEEIAQIAALAR 208 (405)
T ss_pred hhHHHHHHHcCCEE---EEEeccccCcccCCCcCHHHHHHhhhhc-----CeEEEECCCCCCCCcCCCHHHHHHHHHHHH
Confidence 45667888899877 888886 36799999999998753 235566778999999977444 443
Q ss_pred --CCCceeccccccc-c-----ceeeee-cCCCc--cccccccccccCCc----cc--------------CCCCcccHHH
Q psy13453 91 --NGPLKVGGVLRRV-Y-----SSCLVP-RGQKS--LRTTVLFHFLFQHW----QI--------------PLGRRFRALK 141 (764)
Q Consensus 91 --~~wlHVDa~l~~~-y-----~s~ll~-rd~~~--l~~~~s~~~d~~d~----tl--------------e~SRr~~ALk 141 (764)
++|+-+|...... | .+..-. .+.+. .-.+||=.+....+ .+ ..+-....+.
T Consensus 209 ~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~ii~~~~l~~~~~~~~~~~~~~~~~~~ 288 (405)
T PRK06207 209 RYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYRLGVAFGSPAIIDRMEKLQAIVSLRAAGYS 288 (405)
T ss_pred HcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccceEEEEcCHHHHHHHHHHHhHhccCCCHHH
Confidence 6777777643211 1 111000 00000 00011100000000 00 0000111122
Q ss_pred HHHHHHHc--cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHH
Q psy13453 142 LWMTLRSY--GLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAV 219 (764)
Q Consensus 142 lWatL~~l--G~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L 219 (764)
..+....+ |..-+.+.+++..+..+++.+.+++.+++++ .+|+-+..+|--.|+. ..+ ...+
T Consensus 289 q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-~~p~gg~fl~~~l~~~-------------~~~--~~~~ 352 (405)
T PRK06207 289 QAVLRTWFSEPDGWMKDRIARHQAIRDDLLRVLRGVEGVFV-RAPQAGSYLFPRLPRL-------------AVS--LHDF 352 (405)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCCcee-cCCCeeEEEEEeCccc-------------CCC--HHHH
Confidence 22222222 3333577777777788889999988878774 4565444444222210 011 1357
Q ss_pred HHHHH-hcCcEEEEecee--CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 220 YDRII-ARKVIYIVKGSF--QDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 220 ~~~L~-~~G~~~vs~t~l--~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
.++|. +.|..+.-...+ .+..++|+++.. ..+++++.++.|.++.++
T Consensus 353 ~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~~---~~~~l~~al~rl~~~l~~ 402 (405)
T PRK06207 353 VKILRLQAGVIVTPGTEFSPHTADSIRLNFSQ---DHAAAVAAAERIAQLIER 402 (405)
T ss_pred HHHHHHhcCEEEeCchHhCCCCCCeEEEEecC---CHHHHHHHHHHHHHHHHH
Confidence 77776 568766544433 235689999985 468888888888776644
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.092 Score=60.60 Aligned_cols=166 Identities=13% Similarity=0.001 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
+....++.+.|++++.-+- ....|+.+|||||-.|++.||...... +.. .++-+|..+..-
T Consensus 89 ~~~~~~lae~L~~~~p~~~---------~~v~f~~sGSEAve~AlKlAr~~~~~~-g~~---------~r~kii~~~~~Y 149 (459)
T PRK05965 89 SEPAIRLAAKLAERAPGSL---------NHVYFTLGGSDAVDSAVRFIRHYWNAT-GRP---------SKKQFISLERGY 149 (459)
T ss_pred CHHHHHHHHHHHhhCCCCc---------CEEEEeCChhHHHHHHHHHHHHHHHhc-CCC---------CccEEEEecCCc
Confidence 3444566777777753111 246899999999999999999864321 100 012244455555
Q ss_pred chhHHHHHHhCCC------------ceEEEecCCCCc----cc--------HHHHHHHHHHhhhcCCCceEEEEeeccCC
Q psy13453 641 NSSVEKSAIIGDV------------PVRQLRSDDNGV----LR--------GDALLTAVKEDLAKGLIPCCLIATLGTTG 696 (764)
Q Consensus 641 H~Sv~kAa~~lGl------------~v~~Vp~d~~g~----md--------~~~Le~~I~~~~~~G~~p~~VvataGTT~ 696 (764)
|=...-+..+.|. .+..+|.....+ -| .++|++.|++.. .....+|++---...
T Consensus 150 HG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~--~~~iAAvIvEPiqg~ 227 (459)
T PRK05965 150 HGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAELG--ADNVAAFFCEPIQGS 227 (459)
T ss_pred CcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhcC--CCceEEEEEeccccC
Confidence 6443333333221 234444321111 12 356777775421 123445554432222
Q ss_pred cccc----ccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEE
Q psy13453 697 TCAF----DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDF 748 (764)
Q Consensus 697 ~Gai----Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~ 748 (764)
.|.+ +=+++++++|++||+.|++|-.+.|+-....-+....-|+ ..|-+++
T Consensus 228 gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv-~PDiv~~ 282 (459)
T PRK05965 228 GGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFACEAEGV-VPDLMTV 282 (459)
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhhhHhhcCC-CCCeEEe
Confidence 3433 5688999999999999999999887633222222222345 3666665
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.041 Score=61.59 Aligned_cols=226 Identities=12% Similarity=0.059 Sum_probs=133.2
Q ss_pred ccccCCcceeeeeHHHHHhhcCCCCCCeEEecCCC--CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCccccc-ccCchh
Q psy13453 11 AYPSETLSLLIYESFKATHSLSGTPDQVRLSGLPD--SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQD-IQSLNA 87 (764)
Q Consensus 11 ~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpvd~--~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~-iDpi~~ 87 (764)
+|.+.+. +---+.|-|..+|. ..++...-+. ..-.|++++ +.+. ....+--+--.|.+|+ +.|+++
T Consensus 99 l~~~~G~--fg~r~~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~v~~~hnETstGv~~~~~~~ 167 (365)
T PLN02452 99 DFVVTGS--WSKKAAKEAKKYCK--TNVIASGKDEKYTKIPSVSEW----ELTP---DAKFVHICANETIHGVEFKDYPD 167 (365)
T ss_pred EEEECCH--HHHHHHHHHHHhCC--CcEEEecCCCCCCCCCChHHc----CCCC---CCcEEEECCCCCCCcEecCcccc
Confidence 6666552 22335566777775 2233221121 114566664 2111 1123337889999999 699999
Q ss_pred hhcCCCceecccc------------------ccc----cc-eeeeecCCCccccccccccccCCcccC-------CCCcc
Q psy13453 88 PVSNGPLKVGGVL------------------RRV----YS-SCLVPRGQKSLRTTVLFHFLFQHWQIP-------LGRRF 137 (764)
Q Consensus 88 ia~~~wlHVDa~l------------------~~~----y~-s~ll~rd~~~l~~~~s~~~d~~d~tle-------~SRr~ 137 (764)
+.+ ..+=||+.- .|+ -+ +++..|++- +...-...+.+.+|..+ .+=..
T Consensus 168 i~~-~~lvVDa~Ss~g~~pidv~~~~v~~~saqK~lGP~Gl~~v~vr~~~-l~~~~~~~~~~~~~~~~~~~~s~~~TP~v 245 (365)
T PLN02452 168 VGN-VPLVADMSSNFLSKPVDVSKYGVIYAGAQKNVGPSGVTIVIIRKDL-IGNARPITPGMLDYKIHAENDSLYNTPPC 245 (365)
T ss_pred cCC-CeEEEECCccccCcccCHHHcCEEEEecccccCCCCeEEEEEcHHH-HhhcccCCCchhhHHHHHhcCCccCChhH
Confidence 864 455677721 111 11 345554322 11110111223333221 12222
Q ss_pred c-HHHHHHHHHHccHH-HHHHHHHHHHHHHHHHHHHHhcCCCeEEe-CCC---CceeEEEEeeccccccccccccCccCC
Q psy13453 138 R-ALKLWMTLRSYGLK-GLQAYLRKHISLAKKFADLVEQDDRFELV-CPP---SMGLVCFRLKVRFWDKLDNLFGTISFG 211 (764)
Q Consensus 138 ~-ALklWatL~~lG~e-Gy~~~i~~~i~lA~~l~~~I~~~p~~ell-~~P---~l~iV~Fry~P~~~~~~~~~~~~~~~~ 211 (764)
- ...+-.+++.+=.+ |+..+.++..++++++.+.|++.++|... .++ ...+|+|++. +
T Consensus 246 ~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~~rs~~~vsF~~~----------------~ 309 (365)
T PLN02452 246 FGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGFYVCPVEKSVRSLMNVPFTLG----------------G 309 (365)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChHHhCCeEEEEEcC----------------C
Confidence 2 23556677777665 89999999999999999999998888222 222 2358899763 2
Q ss_pred ccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 212 DNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 212 ~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
. +.+.++.+.+.++|...+.....-|. +|++ +.+.++.++++.+++.+++..++
T Consensus 310 ~-~~~~~f~~~~~~~g~~~~~G~r~~gg--~R~s-~yna~~~~~v~~L~~~m~~f~~~ 363 (365)
T PLN02452 310 S-ELEAEFVKEAAKAGMVQLKGHRSVGG--MRAS-IYNAMPLAGVEKLVAFMKDFQAK 363 (365)
T ss_pred c-hhHHHHHHHHHHCCCcccCCccccCc--eEEE-CcCCCCHHHHHHHHHHHHHHHHh
Confidence 2 26678999999999855444333333 9996 55566799999999999988653
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.11 Score=59.31 Aligned_cols=167 Identities=14% Similarity=-0.044 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcch
Q psy13453 563 LEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNS 642 (764)
Q Consensus 563 lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~ 642 (764)
.-.+..+.|.+++--+. ..--+|+.+||+||=.|++.||....+ .-+|-....-|=
T Consensus 100 ~~v~~ae~L~~~~p~~~--------~~~~~f~~sGaeA~E~AiKiAr~~Tgr----------------~~viaf~~afHG 155 (447)
T COG0160 100 PYVELAEKLTALAPGSG--------LKKVFFGNSGAEAVEAAIKIARAYTGR----------------PGVIAFDGAFHG 155 (447)
T ss_pred hHHHHHHHHHHhCCccc--------CCeEEecCCcHHHHHHHHHHHHHHhCC----------------CcEEEECCcccc
Confidence 33445556666653321 123579999999999999999987432 124555666665
Q ss_pred hHHHHHHhCC--------C-----ceEEEecCCCC------------cccHHHHHHHHHHhhhcCCCceEEEEeeccCCc
Q psy13453 643 SVEKSAIIGD--------V-----PVRQLRSDDNG------------VLRGDALLTAVKEDLAKGLIPCCLIATLGTTGT 697 (764)
Q Consensus 643 Sv~kAa~~lG--------l-----~v~~Vp~d~~g------------~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~ 697 (764)
...-++.+.| . .+..+|-.... .-..+.++..|......+..|.++++=--..+-
T Consensus 156 ~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgeg 235 (447)
T COG0160 156 RTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEG 235 (447)
T ss_pred cchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCC
Confidence 5555554422 1 37777764222 334566777777776667778888776666666
Q ss_pred cccc----cHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCC
Q psy13453 698 CAFD----NLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLV 756 (764)
Q Consensus 698 GaiD----pl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~ 756 (764)
|.+. =+.++.++|++||+.|++|-.|.|+-.--.-+.+.-.|+ ..|-||+. |-++.
T Consensus 236 G~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv-~PDivt~a--K~ig~ 295 (447)
T COG0160 236 GIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGV-EPDIVTLA--KSLGG 295 (447)
T ss_pred CCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCC-CCCEEEec--ccccC
Confidence 7664 488899999999999999999999754443334444566 56777765 54444
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.032 Score=62.41 Aligned_cols=207 Identities=9% Similarity=0.006 Sum_probs=120.5
Q ss_pred eeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-------CCCc
Q psy13453 22 YESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-------NGPL 94 (764)
Q Consensus 22 YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-------~~wl 94 (764)
++...+++.+|.+. +.||+++++.+|+++|++... ++-+++-+-++.++|.+=+.+++.+ +.|+
T Consensus 130 ~~~~~~~~~~g~~~---~~v~~~~~~~~d~~~l~~~~~------~~~~v~l~nP~NPTG~~~~~~~l~~l~~~~~~~~~l 200 (370)
T PRK09105 130 EAGWRAADAQGAPV---AKVPLRADGAHDVKAMLAADP------NAGLIYICNPNNPTGTVTPRADIEWLLANKPAGSVL 200 (370)
T ss_pred HHHHHHHHHcCCeE---EEecCCCCCCCCHHHHHhcCC------CCCEEEEeCCCCCCCcCcCHHHHHHHHHhCCCCcEE
Confidence 44677899999988 999999889999999987621 2335555668999999987777543 5677
Q ss_pred eeccccccc--cceee-ee-cCCCcc-cccccc---------ccc---------cCCcccCCCCcccHHHHHHHHHHccH
Q psy13453 95 KVGGVLRRV--YSSCL-VP-RGQKSL-RTTVLF---------HFL---------FQHWQIPLGRRFRALKLWMTLRSYGL 151 (764)
Q Consensus 95 HVDa~l~~~--y~s~l-l~-rd~~~l-~~~~s~---------~~d---------~~d~tle~SRr~~ALklWatL~~lG~ 151 (764)
-+|.+.... ..+.. +. .....+ -.+|+= .+- +... ..+ ....+..+++...+..
T Consensus 201 IvDEaY~~f~~~~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~~i~~l~~~--~~~-~~~~~~~~aa~~~L~~ 277 (370)
T PRK09105 201 LVDEAYIHFSDAPSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARPDLLAKLARF--GHN-PLPVPAAAAGLASLRD 277 (370)
T ss_pred EEECchHHhccCcchHHHHhhCCCEEEEecccHhhcCCccceeeeecCHHHHHHHHhc--CCC-CcCHHHHHHHHHHHhC
Confidence 777753110 00100 00 000000 001110 000 0000 111 1333344556655554
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEE
Q psy13453 152 KGLQA-YLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIY 230 (764)
Q Consensus 152 eGy~~-~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~ 230 (764)
+.|.+ ..++.-+..+++.+.|++. ++++ .+|+.+.+.++.. .+ ..++.++|.++|...
T Consensus 278 ~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~-~~~~~~f~~~~~~-----------------~~--~~~l~~~L~~~gI~v 336 (370)
T PRK09105 278 PKLVPQRRAENAAVREDTIAWLKKK-GYKC-TPSQANCFMVDVK-----------------RP--AKAVADAMAKQGVFI 336 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-CCCc-CCCCCcEEEEeCC-----------------CC--HHHHHHHHHHCCcEE
Confidence 55544 4455556777888889885 7765 4566665544321 01 146888888888764
Q ss_pred EEeceeC-CeeEEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13453 231 IVKGSFQ-DRLFMRFAICSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 231 vs~t~l~-g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~ 267 (764)
. .... ...++|+++. ++++++.+++.++++.
T Consensus 337 -~-~~~~~~~~~~Ris~~----~~~~~~~l~~al~~~~ 368 (370)
T PRK09105 337 -G-RSWPIWPNWVRVTVG----SEEEMAAFRSAFAKVM 368 (370)
T ss_pred -e-cCCCCCCCeEEEEcC----CHHHHHHHHHHHHHHh
Confidence 2 2222 3578999877 3678888888887653
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.026 Score=62.42 Aligned_cols=206 Identities=9% Similarity=0.013 Sum_probs=117.5
Q ss_pred ee-HHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc------CCCc
Q psy13453 22 YE-SFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS------NGPL 94 (764)
Q Consensus 22 YS-v~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~------~~wl 94 (764)
|+ +...++.+|+.. +.||+++++.+|++.+++ +. ++-+++-+-++-++|.+=|.+++.+ ++++
T Consensus 112 y~~y~~~~~~~g~~v---~~v~~~~~~~~~~~~l~~-~~------~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~v 181 (354)
T PRK04635 112 YGMYAISAETFNVGV---KALPLTADYQLPLDYIEQ-LD------GAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIV 181 (354)
T ss_pred hHHHHHHHHHcCCEE---EEEecCCCCCCCHHHHHh-cc------CCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEE
Confidence 55 456688999887 999999889999999973 32 2225555689999999988777554 4677
Q ss_pred eeccccccc--cce----------eeeecCCCccccccc-----cccccCCc-------ccCCCCcccHHHHHHHHHHc-
Q psy13453 95 KVGGVLRRV--YSS----------CLVPRGQKSLRTTVL-----FHFLFQHW-------QIPLGRRFRALKLWMTLRSY- 149 (764)
Q Consensus 95 HVDa~l~~~--y~s----------~ll~rd~~~l~~~~s-----~~~d~~d~-------tle~SRr~~ALklWatL~~l- 149 (764)
-+|.+.... ..+ .+..+ ++...|. ..+-+... .+...-...++...+++..+
T Consensus 182 ivDeay~~~~~~~s~~~~~~~~~~~iv~~---S~SK~~~l~GlRlG~~i~~~~~~~~l~~~~~~~~~~~~~~~~a~~~l~ 258 (354)
T PRK04635 182 VVDEAYIEFCPEYSVADLLASYPNLVVLR---TLSKAFALAGARCGFTLANEELIEILMRVIAPYPVPLPVSEIATQALS 258 (354)
T ss_pred EEeCchHhhccCcchHHHHhhCCCEEEEe---chHHHhhhhHHHHhhhhCCHHHHHHHHhhcCCCCCCHHHHHHHHHHHh
Confidence 778753110 001 11111 0111110 00000000 00000111222223333333
Q ss_pred --cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcC
Q psy13453 150 --GLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARK 227 (764)
Q Consensus 150 --G~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G 227 (764)
|.+-+.+.+++..+..+++.+.|++.+++++. +|.-+-+.+++. + ..++.+.|.+.|
T Consensus 259 ~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~~~g~f~~~~~~----------------~----~~~~~~~l~~~g 317 (354)
T PRK04635 259 EAGLARMKFQVLDLNAQGARLQAALSMYGGAKVL-EGNGNYVLAKFD----------------D----VDAVFKALWDAG 317 (354)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEC-CCCCcEEEEECC----------------C----HHHHHHHHHHCC
Confidence 34445666677777778899999988777754 555443333321 1 135677788888
Q ss_pred cEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHH
Q psy13453 228 VIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRT 265 (764)
Q Consensus 228 ~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~ 265 (764)
..+..........++|+++. ++++++.+++.+++
T Consensus 318 v~v~~~~~~~~~~~lRis~~----~~e~~~~l~~al~~ 351 (354)
T PRK04635 318 IVARAYKDPRLANCIRFSFS----NRAETDKLIGLIRN 351 (354)
T ss_pred EEEEECCCCCCCCeEEEEeC----CHHHHHHHHHHHHH
Confidence 75543322223468999864 57899999988865
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.077 Score=59.29 Aligned_cols=216 Identities=10% Similarity=0.067 Sum_probs=117.5
Q ss_pred eeHHHHHhhcCCCCCCeEEecCCC--CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccC---chhhhc-----C
Q psy13453 22 YESFKATHSLSGTPDQVRLSGLPD--SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQS---LNAPVS-----N 91 (764)
Q Consensus 22 YSv~KAa~~LGl~~~~v~~Vpvd~--~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDp---i~~ia~-----~ 91 (764)
.+....++.+|... +.+|+++ .+.+|+++|++++..+ +-+++-+.++.++|.+=+ ++++++ +
T Consensus 115 ~~~~~~~~~~g~~v---~~v~~~~~~~~~~d~~~l~~~~~~~-----~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~ 186 (373)
T PRK07324 115 QQLYDIPESLGAEV---DYWQLKEENGWLPDLDELRRLVRPN-----TKLICINNANNPTGALMDRAYLEEIVEIARSVD 186 (373)
T ss_pred hhHHHHHHHcCCEE---EEEecccccCCCCCHHHHHHhCCCC-----CcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCC
Confidence 35667788899876 9999974 3578999999888642 225556688889998866 666654 8
Q ss_pred CCceeccccccc-cc----eeeeecCCCccccccccccc---------------------cCCcccCCCCcccHHHHHHH
Q psy13453 92 GPLKVGGVLRRV-YS----SCLVPRGQKSLRTTVLFHFL---------------------FQHWQIPLGRRFRALKLWMT 145 (764)
Q Consensus 92 ~wlHVDa~l~~~-y~----s~ll~rd~~~l~~~~s~~~d---------------------~~d~tle~SRr~~ALklWat 145 (764)
+++.+|.+.... |. +..-..+......+|+=.+. +..++ +-....+.-+++
T Consensus 187 ~~ii~De~y~~l~~~~~~~s~~~~~~~~I~~~s~SK~~~~~G~RiG~i~~~~~li~~~~~~~~~~---~~~~~~~~q~~a 263 (373)
T PRK07324 187 AYVLSDEVYRPLDEDGSTPSIADLYEKGISTNSMSKTYSLPGIRVGWIAANEEVIDILRKYRDYT---MICAGVFDDMLA 263 (373)
T ss_pred CEEEEEccccccccCCCCCChhhccCCEEEEecchhhcCCccceeEEEecCHHHHHHHHHHhCcE---EecCChHHHHHH
Confidence 899999853211 10 10000000000001110000 01111 012233444444
Q ss_pred HHHcc-HHHHHHHHHH-HHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHH
Q psy13453 146 LRSYG-LKGLQAYLRK-HISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRI 223 (764)
Q Consensus 146 L~~lG-~eGy~~~i~~-~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L 223 (764)
...+. .+.+.+..++ .-+..+.+.+.+++++++..+ .|+-+...|-..+. ..+ ..++.++|
T Consensus 264 ~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~-~p~gg~~~~i~~~~--------------~~~--~~~~~~~l 326 (373)
T PRK07324 264 SLALEHRDAILERNRKIVRTNLAILDEWVAKEPRVSYV-KPKAVSTSFVKLDV--------------DMP--SEDFCLKL 326 (373)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEE-CCCceEEEEEEeCC--------------CCC--HHHHHHHH
Confidence 44442 2333333333 334456677888887777654 45544444432221 011 23566666
Q ss_pred H-hcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13453 224 I-ARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATE 268 (764)
Q Consensus 224 ~-~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~ 268 (764)
. +.|..+.-........++|++++. .++.+++.++.|.+..+
T Consensus 327 l~~~gv~v~pg~~F~~~~~iRis~~~---~~~~l~~~l~rl~~~l~ 369 (373)
T PRK07324 327 LKETGVLLVPGNRFDLEGHVRIGYCC---DTETLKKGLKKLSEFLR 369 (373)
T ss_pred HHhcCEEEECccccCCCCeEEEEecC---CHHHHHHHHHHHHHHHH
Confidence 5 557755544444345689999875 47788888888777654
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.054 Score=61.52 Aligned_cols=219 Identities=13% Similarity=0.089 Sum_probs=123.2
Q ss_pred eeeHHHHHhhcCCCCCCeEEecCC-CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccC---chhhhc-----C
Q psy13453 21 IYESFKATHSLSGTPDQVRLSGLP-DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQS---LNAPVS-----N 91 (764)
Q Consensus 21 ~YSv~KAa~~LGl~~~~v~~Vpvd-~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDp---i~~ia~-----~ 91 (764)
+.....+++..|... +.||++ +++.+|+++|++++... +-+++-+.+.-++|.+=+ ++++++ +
T Consensus 149 y~~~~~~~~~~g~~~---~~v~~~~~~~~~~~~~l~~~~~~~-----~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~ 220 (413)
T PLN00175 149 YDSYEATLSMAGAKI---KTVTLRPPDFAVPEDELKAAFTSK-----TRAILINTPHNPTGKMFTREELELIASLCKEND 220 (413)
T ss_pred chhHHHHHHHcCCEE---EEEECCcccCCCCHHHHHHhcCcC-----ceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 345677888999877 999997 46899999999998642 224555678889999855 444443 7
Q ss_pred CCceeccccccc-c----ceeeeecC--CCc-cccccccccccCCccc------------------CCCCcccHHHHHHH
Q psy13453 92 GPLKVGGVLRRV-Y----SSCLVPRG--QKS-LRTTVLFHFLFQHWQI------------------PLGRRFRALKLWMT 145 (764)
Q Consensus 92 ~wlHVDa~l~~~-y----~s~ll~rd--~~~-l~~~~s~~~d~~d~tl------------------e~SRr~~ALklWat 145 (764)
+|+.+|...... | .++.-+.. ... .-.+||=.+....+-+ ..+-....+..+++
T Consensus 221 ~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~v~~~~l~~~l~~~~~~~~~~~s~~~Q~a~ 300 (413)
T PLN00175 221 VLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATATPMQWAA 300 (413)
T ss_pred cEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccCcchheeeeEeCHHHHHHHHHHHhhccCCCCHHHHHHH
Confidence 888888853211 1 01100000 000 0001110000000000 00112233334444
Q ss_pred HHHc--cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEE-EeeccccccccccccCccCCccHHHHHHHHH
Q psy13453 146 LRSY--GLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCF-RLKVRFWDKLDNLFGTISFGDNDLNKAVYDR 222 (764)
Q Consensus 146 L~~l--G~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~F-ry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~ 222 (764)
...+ +.+-+.+..++.-+..+.+.+.|++. ++++ .+|+-+...| ++.|.+ .+ -..++.+.
T Consensus 301 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~p~g~~f~~~~~~~~~--------------~~-~~~~~~~~ 363 (413)
T PLN00175 301 VAALRAPESYYEELKRDYSAKKDILVEGLKEV-GFKV-YPSSGTYFVMVDHTPFG--------------FE-NDIAFCEY 363 (413)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCee-cCCCeeEEEEEeccccC--------------CC-CHHHHHHH
Confidence 4444 33335666666677788888999886 6775 4566554333 322111 00 02467777
Q ss_pred HH-hcCcEEEEecee-----CCeeEEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13453 223 II-ARKVIYIVKGSF-----QDRLFMRFAICSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 223 L~-~~G~~~vs~t~l-----~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~ 267 (764)
|. +.|..+.-.+.+ .+..++|++++. .++++++.++.|.+..
T Consensus 364 ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~~---~~e~l~~~~~rL~~~~ 411 (413)
T PLN00175 364 LIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCK---DEETLRAAVERMKTKL 411 (413)
T ss_pred HHHhCCEEEeCchHhCCCCCCCCCEEEEEEcC---CHHHHHHHHHHHHHHH
Confidence 76 458766644433 235689999984 5889999988887654
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.088 Score=59.48 Aligned_cols=219 Identities=11% Similarity=0.065 Sum_probs=124.2
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCc
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPL 94 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wl 94 (764)
.|+|+..++...|... +.++.+ |.+.+++.+++... .++-+++-..+..++|.+=|++++.+ ++++
T Consensus 141 ~h~s~~~~~~~~g~~~---~~~~~~-----d~~~l~~~l~~~~~-~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~~~~~l 211 (410)
T PRK13392 141 NHASMIEGIRRSGAEK---QVFRHN-----DLADLEEQLASVDP-DRPKLIAFESVYSMDGDIAPIEAICDLADRYNALT 211 (410)
T ss_pred hhHHHHHHHHHcCCeE---EEEeCC-----CHHHHHHHHHhccC-CCCEEEEEeCCCCCCcccccHHHHHHHHHHcCCEE
Confidence 6888888888888654 555432 56677777765321 22224467778889999988888775 7899
Q ss_pred eecccccc-cc---ceeee-----ecCCCccccccc----c--cc-----cc----CCc--ccCCCCc---ccHHHHHHH
Q psy13453 95 KVGGVLRR-VY---SSCLV-----PRGQKSLRTTVL----F--HF-----LF----QHW--QIPLGRR---FRALKLWMT 145 (764)
Q Consensus 95 HVDa~l~~-~y---~s~ll-----~rd~~~l~~~~s----~--~~-----d~----~d~--tle~SRr---~~ALklWat 145 (764)
.||.+... .+ +..+. ..+.+....+++ . .+ +. ..+ ..-.+-. .....+.++
T Consensus 212 ivDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~~GG~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aa 291 (410)
T PRK13392 212 YVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCLGGYIAASADLIDFVRSFAPGFIFTTALPPAVAAGATAA 291 (410)
T ss_pred EEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhcccchhhcCHHHHHHHHHhCcchhccCcCCHHHHHHHHHH
Confidence 99986531 11 11111 001111111111 0 00 00 000 0011111 122333455
Q ss_pred HHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHH-
Q psy13453 146 LRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRII- 224 (764)
Q Consensus 146 L~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~- 224 (764)
|+.+-. +.+..++..+..+++.+.+++. ++++. +++.+++.+... .+....++.++|.
T Consensus 292 L~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~i~~~-----------------~~~~~~~~~~~L~~ 350 (410)
T PRK13392 292 IRHLKT--SQTERDAHQDRVAALKAKLNAN-GIPVM-PSPSHIVPVMVG-----------------DPTLCKAISDRLMS 350 (410)
T ss_pred HHHHhc--CHHHHHHHHHHHHHHHHHHHHc-CCCCC-CCCCCEEEEEeC-----------------CHHHHHHHHHHHHH
Confidence 554322 3345577788889999999986 77754 566666655431 1112357888886
Q ss_pred hcCcEEEEec--ee-CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 225 ARKVIYIVKG--SF-QDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 225 ~~G~~~vs~t--~l-~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
+.|....... .+ .+...+|+++.-.+ ++++++.+++.|+++.++
T Consensus 351 ~~GI~v~~~~~p~~~~~~~~lRis~~~~~-t~edid~l~~aL~~~~~~ 397 (410)
T PRK13392 351 EHGIYIQPINYPTVPRGTERLRITPTPLH-DDEDIDALVAALVAIWDR 397 (410)
T ss_pred hCCEEEeeeCCCCCCCCCceEEEEECCCC-CHHHHHHHHHHHHHHHHH
Confidence 5676543221 12 34578999765544 578999999999888654
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.073 Score=60.76 Aligned_cols=166 Identities=13% Similarity=0.006 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
....++.+.|++++..+- ....|+.+|||||-.|++.||.....+ +.. .+.-+|..+..-|
T Consensus 83 ~~~~~lae~L~~~~p~~~---------~~v~f~~SGseA~e~AlklAr~~~~~~-g~~---------~r~~ii~~~~~yH 143 (422)
T PRK05630 83 EPAIKLTRKLLNLTDNGL---------DHVFYSDSGSVSVEVAIKMALQYSKGQ-GHP---------ERTRLLTWRSGYH 143 (422)
T ss_pred HHHHHHHHHHHhhCCCCc---------CEEEEeCCcHHHHHHHHHHHHHHHHhc-CCC---------CCcEEEEECCCcC
Confidence 344556667777763211 246899999999999999999864321 100 0112455555566
Q ss_pred hhHHHHHHhCCC-------------ceEEEecCCCCcccH-------HHHHHHHHHhhhcCCCceEEEEeec-cCCcc--
Q psy13453 642 SSVEKSAIIGDV-------------PVRQLRSDDNGVLRG-------DALLTAVKEDLAKGLIPCCLIATLG-TTGTC-- 698 (764)
Q Consensus 642 ~Sv~kAa~~lGl-------------~v~~Vp~d~~g~md~-------~~Le~~I~~~~~~G~~p~~VvataG-TT~~G-- 698 (764)
=...-+..+.+- ++..+|.......+. +.+++.|.+ ...+|++--. ....|
T Consensus 144 G~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~------~iAAvi~EPi~qg~gG~~ 217 (422)
T PRK05630 144 GDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVRGSSPQEISEYLRSLELLIDE------TVAAIIIEPIVQGAGGMR 217 (422)
T ss_pred CccHHHhccCCCcccccccccccCCCCeEcCCCcccCCChHHHHHHHHHHHHHHhh------ceEEEEEechhcCcCCcc
Confidence 433333332221 234444321111122 333443332 2334443321 12223
Q ss_pred --ccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCC
Q psy13453 699 --AFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLL 755 (764)
Q Consensus 699 --aiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~ 755 (764)
.-+.+++|.++|++||+.|++|-++-|+-....-+.....|+ ..|-+++ -|.++
T Consensus 218 ~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv-~PDi~t~--gK~l~ 273 (422)
T PRK05630 218 FHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAGV-TPDIMCV--GKALT 273 (422)
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhhHHHhcCC-CCCeeee--echhh
Confidence 346899999999999999999999866422111111222355 4676654 67763
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.058 Score=60.74 Aligned_cols=217 Identities=11% Similarity=0.037 Sum_probs=117.4
Q ss_pred eHHHHHhhcCCCCCCeEEecCC--CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccC---chhhhc-----CC
Q psy13453 23 ESFKATHSLSGTPDQVRLSGLP--DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQS---LNAPVS-----NG 92 (764)
Q Consensus 23 Sv~KAa~~LGl~~~~v~~Vpvd--~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDp---i~~ia~-----~~ 92 (764)
...++++.+|+.. +.+|++ +++.+|+++|++++++. +.+++-+.++.++|.+=+ +.++++ ++
T Consensus 131 ~~~~~~~~~g~~v---~~~~~~~~~~~~~d~~~l~~~~~~~-----~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~ 202 (401)
T TIGR01264 131 LYETLAESMGIEV---KLYNLLPDKSWEIDLKQLESLIDEK-----TAALIVNNPSNPCGSVFSRQHLEEILAVAERQCL 202 (401)
T ss_pred hHHHHHHHcCCEE---EEeecCCccCCCCCHHHHHHHhccC-----ceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCC
Confidence 3456788899876 888886 35799999999988653 234545567889998844 555554 78
Q ss_pred Cceeccccccc-c-----ceee-eecCCCc-cccccccccccCCcccCCCC----------------------------c
Q psy13453 93 PLKVGGVLRRV-Y-----SSCL-VPRGQKS-LRTTVLFHFLFQHWQIPLGR----------------------------R 136 (764)
Q Consensus 93 wlHVDa~l~~~-y-----~s~l-l~rd~~~-l~~~~s~~~d~~d~tle~SR----------------------------r 136 (764)
|+.+|.+.... | .++. +..+... .-.+||=. |.+.|-| .
T Consensus 203 ~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~-----~~~~GlRiG~iv~~~~~~~~~~~~~~~~~~~~~~~~ 277 (401)
T TIGR01264 203 PIIADEIYGDMVFSGATFEPLASLSSTVPILSCGGLAKR-----WLVPGWRLGWIIIHDRRGILRDIRDGLVKLSQRILG 277 (401)
T ss_pred EEEEEhhhhhhccCCcccccHHHcCCCCcEEEEccCccc-----CCCccceEEEEEecCcchhHHHHHHHHHHHhhccCC
Confidence 99988853211 1 1100 0000000 00111100 0111111 1
Q ss_pred ccHHHHHHHHHHc--cHHH-HHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEE-EeeccccccccccccCccCCc
Q psy13453 137 FRALKLWMTLRSY--GLKG-LQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCF-RLKVRFWDKLDNLFGTISFGD 212 (764)
Q Consensus 137 ~~ALklWatL~~l--G~eG-y~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~F-ry~P~~~~~~~~~~~~~~~~~ 212 (764)
...+..+++...+ +.++ +.+..+...+..+++.+.|++.+++.. ..|+-+...| ++...... ...
T Consensus 278 ~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~-~~p~~g~f~~~~~~~~~~~----------~~~ 346 (401)
T TIGR01264 278 PCTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAVPGLRP-VMPSGAMYMMVGIEMEHFP----------EFK 346 (401)
T ss_pred CCcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc-cCCCeeeEEEEEecccccC----------CCC
Confidence 1223333332322 2234 444455555566778889988877664 3454444444 32110000 001
Q ss_pred cHHHHHHHHHHH-hcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13453 213 NDLNKAVYDRII-ARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATE 268 (764)
Q Consensus 213 d~~n~~L~~~L~-~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~ 268 (764)
+ ..++.+++. +.|..+..........++|++++.+ ++.++..++.|.++.+
T Consensus 347 ~--~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis~~~~---~~~l~~~l~rl~~~~~ 398 (401)
T TIGR01264 347 N--DVEFTERLVAEQSVFCLPGSCFEYPGFFRVVLTVP---VVMMEEACSRIQEFCE 398 (401)
T ss_pred C--HHHHHHHHHHhCCEEEeCchhcCCCCeEEEEEcCC---HHHHHHHHHHHHHHHh
Confidence 1 245667765 6787665444444457999999864 6788888888877654
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.045 Score=61.01 Aligned_cols=220 Identities=9% Similarity=0.047 Sum_probs=122.2
Q ss_pred eeHHHHHhhcCCCCCCeEEecCC--CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCccccccc---Cchhhhc-----C
Q psy13453 22 YESFKATHSLSGTPDQVRLSGLP--DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQ---SLNAPVS-----N 91 (764)
Q Consensus 22 YSv~KAa~~LGl~~~~v~~Vpvd--~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iD---pi~~ia~-----~ 91 (764)
.....+++.+|... +.+|++ +++.+|+++|++++.+. +-+++-+.++-++|.+= .+.++++ +
T Consensus 116 ~~~~~~~~~~g~~~---~~~~~~~~~~~~~d~~~l~~~~~~~-----~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~ 187 (378)
T PRK07682 116 VSYAPLVTLAGGVP---VPVATTLENEFKVQPAQIEAAITAK-----TKAILLCSPNNPTGAVLNKSELEEIAVIVEKHD 187 (378)
T ss_pred hhhHHHHHHcCCEE---EEeecCCccCCCCCHHHHHhhcCcc-----cEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcC
Confidence 34666788888765 888886 36899999999988652 22444456788999874 3555554 7
Q ss_pred CCceeccccccc-----cceee-eec-CCCc-ccccccc---------ccccC---------CcccCCCCcccHHHHHHH
Q psy13453 92 GPLKVGGVLRRV-----YSSCL-VPR-GQKS-LRTTVLF---------HFLFQ---------HWQIPLGRRFRALKLWMT 145 (764)
Q Consensus 92 ~wlHVDa~l~~~-----y~s~l-l~r-d~~~-l~~~~s~---------~~d~~---------d~tle~SRr~~ALklWat 145 (764)
+++.+|...... ..++. +.. +... .-.+||= .+-.. ...-..+.....+...++
T Consensus 188 ~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~ 267 (378)
T PRK07682 188 LIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAPVYFSEAMLKIHQYSMMCAPTMAQFAA 267 (378)
T ss_pred cEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChhhhhhhhhcCHHHHHHHHHHHHhhccCCCHHHHHHH
Confidence 888888853211 11110 000 0000 0001110 00000 000000112233444444
Q ss_pred HHHc--cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHH
Q psy13453 146 LRSY--GLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRI 223 (764)
Q Consensus 146 L~~l--G~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L 223 (764)
...+ |.+-+.++.++.-+..+++.+.|+++ ++++ ..|+-+...|...++. ..+ ..++.+++
T Consensus 268 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~-~~p~g~~~~~~~~~~~-------------~~~--~~~~~~~l 330 (378)
T PRK07682 268 LEALRAGNDDVIRMRDSYRKRRNFFVTSFNEI-GLTC-HVPGGAFYAFPSISST-------------GLS--SEEFAEQL 330 (378)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHHHHC-CCcc-CCCCeeEEEEEeccCC-------------CCC--HHHHHHHH
Confidence 4444 44445566666677788889999886 7764 5566665555322110 111 24567776
Q ss_pred H-hcCcEEEEecee--CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 224 I-ARKVIYIVKGSF--QDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 224 ~-~~G~~~vs~t~l--~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
. +.|..+...... .+..++|+++++ +.+.+++.++.|+++.+.
T Consensus 331 l~~~gv~v~pg~~f~~~~~~~iRis~~~---~~~~l~~~l~~l~~~l~~ 376 (378)
T PRK07682 331 LLEEKVAVVPGSVFGESGEGFIRCSYAT---SLEQLQEAMKRMKRFVEN 376 (378)
T ss_pred HHhCCEEEcCchhhCcCCCCeEEEEeCC---CHHHHHHHHHHHHHHHhh
Confidence 5 568765543333 235799999885 478899999988876543
|
|
| >KOG1549|consensus | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.023 Score=63.77 Aligned_cols=227 Identities=17% Similarity=0.037 Sum_probs=125.3
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCc
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPL 94 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wl 94 (764)
-|=|+.++++.|-=.--.|+.||+++++-.|++.++++|+.++. ++.-.+=+.+.|+.-|+++|.+ ++.+
T Consensus 140 eH~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~-----lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v 214 (428)
T KOG1549|consen 140 EHPCVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTR-----LVSIMHVNNEIGVLQPVKEIVKICREEGVQV 214 (428)
T ss_pred cCcchhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCce-----EEEEEecccCccccccHHHHHHHhCcCCcEE
Confidence 45666677766633323459999999999999999999998532 4435666788999999999995 8889
Q ss_pred eecccc--------------------ccc-c----ceeeeecC-CCccccccccccccCCcccCCCC-----cccHHHHH
Q psy13453 95 KVGGVL--------------------RRV-Y----SSCLVPRG-QKSLRTTVLFHFLFQHWQIPLGR-----RFRALKLW 143 (764)
Q Consensus 95 HVDa~l--------------------~~~-y----~s~ll~rd-~~~l~~~~s~~~d~~d~tle~SR-----r~~ALklW 143 (764)
|+||+. .|+ | .++|.+|. ..-++-. ..-.+-...++.| -..++.+=
T Consensus 215 ~~DaAQavG~i~vDV~eln~D~~s~s~HK~ygp~~iGaLYvr~~~~~~~~~---p~~~GGgq~r~~rsGT~~~~~~~~~g 291 (428)
T KOG1549|consen 215 HVDAAQAVGKIPVDVQELNADFLSISAHKIYGPPGIGALYVRRKRPRLRVE---PPLSGGGQERGLRSGTVATPLAVGLG 291 (428)
T ss_pred EeehhhhcCCccccHHHcCchheeeecccccCCCcceEEEEccCCCccccc---CcccCCccccccccCCcCchhhhhhH
Confidence 999952 122 2 24566654 2212211 1112223333333 11122222
Q ss_pred HHHHHc--cHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEeCC-----CCceeEEEEeeccccccccccccCccCCccHH
Q psy13453 144 MTLRSY--GLKGLQAYLRKHISLAKKFADLVEQ-DDRFELVCP-----PSMGLVCFRLKVRFWDKLDNLFGTISFGDNDL 215 (764)
Q Consensus 144 atL~~l--G~eGy~~~i~~~i~lA~~l~~~I~~-~p~~ell~~-----P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~ 215 (764)
.+.+.. ...++...+++ +-..+...+.. .++..+.+. |.+..+.|.|. .+.... .+.+++
T Consensus 292 sA~e~~~~~~~~~~~~~~~---~~~~ll~~i~~~~~~~~~~G~~~~~~~~~~~~~~~~~-~g~~~~--------~~~~~~ 359 (428)
T KOG1549|consen 292 SAAEFVNKEMAYDEAIIKR---LSEKLLMGIGQSLPEVTLNGSGKSRYPGLVSLSFPYV-EGESLL--------MDLKDV 359 (428)
T ss_pred HHHHHHHhhcchhHHHHHH---HHHHHHHHHhhhCchhhccCCcccccccceeeecccc-cCcchh--------hhhhhh
Confidence 233332 22233333333 55556666544 566666554 44566667642 221100 011111
Q ss_pred H-----------HHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHc
Q psy13453 216 N-----------KAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLR 272 (764)
Q Consensus 216 n-----------~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~ 272 (764)
. .+..-.|...|. ..-.....+|+.+. -+|++++++.+.+.+.+.+..+..
T Consensus 360 ~l~s~~a~~~~~~epsy~l~~~G~-----~~~~~~~~iRis~G-~y~t~~di~~~~~~i~~~v~~~~~ 421 (428)
T KOG1549|consen 360 ALSSGSACTSASLEPSYVLRAIGV-----DEDLAHSSIRISIG-RYTTEEDIDYLVDAIKKLVSLLRE 421 (428)
T ss_pred hhcccchhhcCCCCcchhhhhcCc-----chhhhcceeEEeee-eeCcHHHHHHHHHHHHHHHHhccc
Confidence 1 122222333332 01113568999655 456788999999999998876543
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.045 Score=63.06 Aligned_cols=161 Identities=19% Similarity=0.127 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
+..|.++.+.++++++++ ...|+.+||||+..|+++||.... + +.++.....-
T Consensus 114 ~~~~~~lAe~l~~~~~~~-----------~v~F~nSGtEA~e~AlrlAR~~TG-r---------------~~ii~~~g~Y 166 (453)
T PRK07046 114 SEDAAWVGEELARRFGLP-----------YWQVATTATDANRFVLRWARAVTG-R---------------PKILVFNGCY 166 (453)
T ss_pred CHHHHHHHHHHHHHhCCC-----------EEEEECCHHHHHHHHHHHHHHhhC-C---------------CEEEEECCCC
Confidence 567788888899888643 358999999999999999997621 1 1122223223
Q ss_pred chhHHHHH------------HhCCC------ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc
Q psy13453 641 NSSVEKSA------------IIGDV------PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN 702 (764)
Q Consensus 641 H~Sv~kAa------------~~lGl------~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp 702 (764)
|=...-.. ...|+ .+..+|-+ |+++|++.+.. + ...+|+.---....|.+-|
T Consensus 167 HG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~n-----d~~~l~~~l~~----~-~vAavi~EPi~g~~G~~~p 236 (453)
T PRK07046 167 HGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEFN-----DLAALEAALAD----G-DVAAVLAEPAMTNIGMVLP 236 (453)
T ss_pred CCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCCC-----CHHHHHHHhCC----C-CeEEEEECCCCCCCCCcCC
Confidence 32110000 01122 12222221 68899988842 2 2445554433333455544
Q ss_pred ----HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 703 ----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 703 ----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
++++.++|++||+.|++|-.+....-+-. .... -|+ ..|-+++ -|.++.=+.+|++
T Consensus 237 ~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg-~~~~-~gv-~PDi~t~--gK~lggG~Pi~av 296 (453)
T PRK07046 237 EPGFHEALRELTRRYGTLLVIDETHTISSGPGG-YTRA-HGL-EPDFLVV--GKPIAGGVPCAVY 296 (453)
T ss_pred CHHHHHHHHHHHHHhCCEEEEEccccCccCCcc-hhHH-hCC-Cccceee--hhhhcCCCcceee
Confidence 89999999999999999998741000001 1111 255 4677664 6766654556654
|
|
| >KOG1357|consensus | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.013 Score=65.41 Aligned_cols=171 Identities=14% Similarity=0.177 Sum_probs=113.1
Q ss_pred CCCCCccccccCCCC-ChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCC-
Q psy13453 519 HWQSPQFNAYFPTGS-SYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQST- 596 (764)
Q Consensus 519 ~~~~P~~~~~~~~~~-~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsG- 596 (764)
+.++-+|++|-.+.. .....+..+-.-.++......+. ..+.+-+++-+.+|+++|.++ .-+|..|
T Consensus 140 NlgSYNYLGFa~~~g~ca~~~~~~~~kygl~~css~~e~--G~~~~hkelE~l~A~f~g~e~----------a~vF~mGf 207 (519)
T KOG1357|consen 140 NLGSYNYLGFAQSVGPCAEASLKSFDKYGLSRCSSRHEA--GTTEEHKELEELVARFLGVED----------AIVFSMGF 207 (519)
T ss_pred eecccccccccccCCcCChHHHHHHHHhcccccccchhc--ccHHHHHHHHHHHHHhcCCcc----------eEEEeccc
Confidence 455677888865433 33333333333334443333333 345666777788999999876 3456554
Q ss_pred hHHH-HHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHH
Q psy13453 597 ASEA-TLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAV 675 (764)
Q Consensus 597 gTeA-Nl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I 675 (764)
||-| |+.++ .-+..-|+-.+..|-|+.-.|++.|..+|.-.-+ |+..||+.|
T Consensus 208 ~TNs~~~p~l----------------------~~~gsLIiSDelNHaSi~~GaRLSgAtiRVfkHN-----dm~~LEr~L 260 (519)
T KOG1357|consen 208 ATNSMNIPSL----------------------LGKGSLIISDELNHASLITGARLSGATTRVFRHN-----DMQGLERLL 260 (519)
T ss_pred cccccCccee----------------------ecCCcceeeccccchheeccccccCceEEEEecC-----CHHHHHHHH
Confidence 1211 11111 1123457788899999999999999988876654 378899999
Q ss_pred HHhhhcCCC----c--eEEEEeecc-CCccccccHHHHHHHHHhcCCEEEEecccccccc
Q psy13453 676 KEDLAKGLI----P--CCLIATLGT-TGTCAFDNLEELGPICQEYNIWLHVDAAYAGSAL 728 (764)
Q Consensus 676 ~~~~~~G~~----p--~~VvataGT-T~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l 728 (764)
++....|.. | .++++.-|= ..-|.++++.++.+++++|..+||+|.|+..+++
T Consensus 261 rd~I~~gqP~Thrp~kki~iivegiysmEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~ 320 (519)
T KOG1357|consen 261 RDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAM 320 (519)
T ss_pred HHHHhcCCCCcCCcchheeeeeccceeccCeecccHHHHHhhccccEEEEeecccccccc
Confidence 888776642 2 233333333 3679999999999999999999999999988876
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.059 Score=61.63 Aligned_cols=171 Identities=15% Similarity=0.043 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
+..+.++.+.|++++..+- ....|+.+|||||-.|++.||.....+ +..+ ++-+|.....-
T Consensus 86 ~~~~~~lae~L~~~~p~~~---------~~v~f~~sGseAve~AlklAr~~~~~~-g~~~---------r~~ii~~~~~y 146 (429)
T PRK06173 86 HEPAVELAQKLLEILPPSL---------NKIFFADSGSVAVEVAMKMALQYQQAK-GEVQ---------RTKFATIRSGY 146 (429)
T ss_pred CHHHHHHHHHHHhhCCCCc---------CEEEEeCCchHHHHHHHHHHHHHHHHh-CCCC---------CcEEEEECCCc
Confidence 3455667777777763211 246899999999999999999764221 1000 11234444444
Q ss_pred chhHHHHHHhCC------------C-ceEEEecCCC------CcccHHHHHHHHHHhhhcCCCceEEEEeec-cCCcccc
Q psy13453 641 NSSVEKSAIIGD------------V-PVRQLRSDDN------GVLRGDALLTAVKEDLAKGLIPCCLIATLG-TTGTCAF 700 (764)
Q Consensus 641 H~Sv~kAa~~lG------------l-~v~~Vp~d~~------g~md~~~Le~~I~~~~~~G~~p~~VvataG-TT~~Gai 700 (764)
|=.-.-+..+.| + .+..+|.... ..-+++.|++.|++. +..+.+|++--- ....|.+
T Consensus 147 HG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i~~~---~~~iAAvi~EPi~qg~gG~~ 223 (429)
T PRK06173 147 HGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLLEQK---GDEIAALILEPVVQGAGGMY 223 (429)
T ss_pred CCcchhhhccCCCchhhhhcccccCCCCeEeCCCCcccchhHHHHHHHHHHHHHHhC---CCcEEEEEEcchhhccCCcc
Confidence 432222221111 1 2334443211 112467777877532 233445444332 2223433
Q ss_pred ----ccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCC
Q psy13453 701 ----DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLV 756 (764)
Q Consensus 701 ----Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~ 756 (764)
+=+++|+++|++||++|++|-++-|+-....-+....-|+ ..|-++ +-|.++.
T Consensus 224 ~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv-~PDiv~--~gK~l~g 280 (429)
T PRK06173 224 FYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAGV-VPDIMC--IGKALTG 280 (429)
T ss_pred cCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcchHHHhcCC-CCCEEE--eehhhhC
Confidence 4688899999999999999999866311111111122355 467666 5777643
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.03 Score=62.71 Aligned_cols=217 Identities=8% Similarity=0.005 Sum_probs=117.0
Q ss_pred eeeHHHHHhhcCCCCCCeEEecCC-CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccc---cCchhhhc-----C
Q psy13453 21 IYESFKATHSLSGTPDQVRLSGLP-DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDI---QSLNAPVS-----N 91 (764)
Q Consensus 21 ~YSv~KAa~~LGl~~~~v~~Vpvd-~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~i---Dpi~~ia~-----~ 91 (764)
+-++.++++..|... +.+|++ +++.+|+++|++++++. +-+++.+.+.-++|.+ ++++++.+ +
T Consensus 125 y~~~~~~~~~~g~~~---~~~~~~~~~~~~d~~~l~~~~~~~-----~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~ 196 (386)
T PRK09082 125 YDSYAPAIELAGGRA---VRVALQPPDFRVDWQRFAAAISPR-----TRLIILNTPHNPSGTVWSAADMRALWQLIAGTD 196 (386)
T ss_pred chhhHHHHHHcCCEE---EEEecCcccccCCHHHHHHhcCcc-----ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCC
Confidence 346778888888766 999997 46899999999998642 1244555677899977 67777664 8
Q ss_pred CCceeccccccc-c-----ceeeeecC-CCccc--cccccccc------------------cCCcccCCCCcccHHHHHH
Q psy13453 92 GPLKVGGVLRRV-Y-----SSCLVPRG-QKSLR--TTVLFHFL------------------FQHWQIPLGRRFRALKLWM 144 (764)
Q Consensus 92 ~wlHVDa~l~~~-y-----~s~ll~rd-~~~l~--~~~s~~~d------------------~~d~tle~SRr~~ALklWa 144 (764)
+|+.+|...... | .++.-... ..... .+|+=.+. +....-........+..++
T Consensus 197 i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv~~~~l~~~~~~~~~~~~~~~~~~~q~~ 276 (386)
T PRK09082 197 IYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCVAPAALSAEFRKVHQYNTFTVNTPAQLA 276 (386)
T ss_pred EEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchhhhhhhhhCCHHHHHHHHHHHhhhcCCCChHHHHH
Confidence 899988863211 1 11100000 00000 01110000 0000000111223333333
Q ss_pred HHHHc--cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEE-EeeccccccccccccCccCCccHHHHHHHH
Q psy13453 145 TLRSY--GLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCF-RLKVRFWDKLDNLFGTISFGDNDLNKAVYD 221 (764)
Q Consensus 145 tL~~l--G~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~F-ry~P~~~~~~~~~~~~~~~~~d~~n~~L~~ 221 (764)
+...+ +.+-++++.+..-+..+++.+.+++. ++++ .+|+-+...| ++. +- .+.+ ..++.+
T Consensus 277 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~-~~~~g~~~~~~~~~-~~------------~~~~--~~~~~~ 339 (386)
T PRK09082 277 LADYLRAEPEHYLELPAFYQAKRDRFRAALANS-RFKL-LPCEGTYFQLVDYS-AI------------SDLD--DVEFCQ 339 (386)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhC-CCcc-cCCCeeEEEEEecc-cc------------CCCC--HHHHHH
Confidence 33333 34444444455556667788888873 6664 4566665444 432 10 0111 145666
Q ss_pred HHH-hcCcEEEEecee----CCeeEEEEeccCCCCCHHHHHHHHHHHHH
Q psy13453 222 RII-ARKVIYIVKGSF----QDRLFMRFAICSSQTEESDVQLGWNEIRT 265 (764)
Q Consensus 222 ~L~-~~G~~~vs~t~l----~g~~~LRi~v~np~Tt~e~i~~~l~~l~~ 265 (764)
.|. +.|.++.....+ .+..++|++++. .++.+++.++.|++
T Consensus 340 ~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~~---~~~~l~~~~~rl~~ 385 (386)
T PRK09082 340 WLTREHGVAAIPLSVFYADPFPHRLVRLCFAK---QEETLDAAAERLCQ 385 (386)
T ss_pred HHHHhCCEEEeCcHHhCCCCCCCCEEEEEecC---CHHHHHHHHHHHhh
Confidence 654 557655443333 124689999875 47888888887764
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.041 Score=60.79 Aligned_cols=210 Identities=5% Similarity=-0.029 Sum_probs=119.1
Q ss_pred eHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-------CCCce
Q psy13453 23 ESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-------NGPLK 95 (764)
Q Consensus 23 Sv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-------~~wlH 95 (764)
....++...|.+. +.+|++ ++.+|+++|++++++. +-+++-+-++-++|.+=|.+++.+ ++++-
T Consensus 117 ~~~~~~~~~g~~~---~~~~~~-~~~~d~~~l~~~~~~~-----~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii 187 (359)
T PRK03158 117 QYRHNAIIEGAEV---REVPLK-DGGHDLEAMLKAIDEQ-----TKIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVV 187 (359)
T ss_pred HHHHHHHHcCCeE---EEEecC-CCCcCHHHHHHhcCCC-----CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEE
Confidence 3567788888876 999998 6889999999888542 235544678999999988777443 56777
Q ss_pred eccccccc-cc--------------eeeeec-CCCccc-cccccccccCC------c-ccCCCCcccHHHHHHHHHHccH
Q psy13453 96 VGGVLRRV-YS--------------SCLVPR-GQKSLR-TTVLFHFLFQH------W-QIPLGRRFRALKLWMTLRSYGL 151 (764)
Q Consensus 96 VDa~l~~~-y~--------------s~ll~r-d~~~l~-~~~s~~~d~~d------~-tle~SRr~~ALklWatL~~lG~ 151 (764)
+|.+.... +. ..+..+ -.+.+. ..+...+-... + .....=....+...++...+-.
T Consensus 188 ~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~ 267 (359)
T PRK03158 188 LDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYGIASEELIEKLNIARPPFNTTRIAQYAAIAALED 267 (359)
T ss_pred EECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhhehhcCCHHHHHHHHHhcCCCCCCHHHHHHHHHHhcC
Confidence 77753111 00 001100 011100 00000000000 0 0000012345555555555544
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEE
Q psy13453 152 KGLQAY-LRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIY 230 (764)
Q Consensus 152 eGy~~~-i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~ 230 (764)
..|.+. .+..-+..+++.+.+++. ++.+. ++.-+.+..+.. .+ ..++.++|.+.|..+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~-~~~g~~i~~~~~-----------------~~--~~~~~~~l~~~gv~v 326 (359)
T PRK03158 268 QAFLKECVEKNAEGLEQYYAFCKEY-GLFYY-PSQTNFIFVDTG-----------------RD--ANELFEALLKKGYIV 326 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-CCeeC-CCcCcEEEEECC-----------------CC--HHHHHHHHHHCCeEE
Confidence 444433 344455566777888776 67654 444433333221 01 246778888888766
Q ss_pred EEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 231 IVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 231 vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
..........++|+++. ++++.+.+++.|+++
T Consensus 327 ~~g~~f~~~~~iRi~~~----~~~~~~~l~~al~~~ 358 (359)
T PRK03158 327 RSGAALGFPTGVRITIG----LKEQNDKIIELLKEL 358 (359)
T ss_pred eeCCCCCCCCeEEEecC----CHHHHHHHHHHHHHh
Confidence 65544444578999866 788999999998764
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.092 Score=60.00 Aligned_cols=168 Identities=14% Similarity=0.012 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcch
Q psy13453 563 LEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNS 642 (764)
Q Consensus 563 lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~ 642 (764)
...++.++|+++++-+- ....|+.+||+||..|++.||.....+ +..+ ++-++..+..-|-
T Consensus 89 ~~~~la~~l~~~~~~~~---------~~v~f~~sGseA~e~AlklAr~~~~~~-~~~~---------r~~il~~~~~yHG 149 (427)
T TIGR00508 89 PAIELCQKLVKMTPNAL---------DCVFLADSGSVAVEVALKMALQYWQAK-GEKN---------RQKFLTIRSGYHG 149 (427)
T ss_pred HHHHHHHHHHhhCCCCC---------CEEEEeCCcHHHHHHHHHHHHHHHHhh-CCCC---------ccEEEEEcCCcCC
Confidence 34556777777764221 246899999999999999999875322 1100 1224555656664
Q ss_pred hHHHHHHhCCC-------------ceEEEecCCC-C-----cccHHHHHHHHHHhhhcCCCceEEEEeec-cCCcc----
Q psy13453 643 SVEKSAIIGDV-------------PVRQLRSDDN-G-----VLRGDALLTAVKEDLAKGLIPCCLIATLG-TTGTC---- 698 (764)
Q Consensus 643 Sv~kAa~~lGl-------------~v~~Vp~d~~-g-----~md~~~Le~~I~~~~~~G~~p~~VvataG-TT~~G---- 698 (764)
...-+..+.|. .+..+|.... . .-|.+++++.+.+. +....+|++--- +...|
T Consensus 150 ~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~---~~~vaavivEPv~~g~gG~~~~ 226 (427)
T TIGR00508 150 DTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQNRFDEEWNEEAITPLAKLMELH---SDEIAAVILEPIVQGAGGMRFY 226 (427)
T ss_pred ccHhhhcccCCcccccccccccCCCCeEcCCCCccccchhHHHHHHHHHHHHHhc---CCcEEEEEEechhcCcCCcccC
Confidence 33323222221 1223322111 1 12567777787642 222333333221 22222
Q ss_pred ccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCC
Q psy13453 699 AFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLL 755 (764)
Q Consensus 699 aiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~ 755 (764)
..+.+.+|+++|++||+.|++|-++.|.-....-+.....|+ ..|-++ .-|.++
T Consensus 227 ~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v-~pDi~~--~gK~l~ 280 (427)
T TIGR00508 227 HPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAGV-VPDILC--VGKALT 280 (427)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCC-CCCEEE--echhhh
Confidence 357999999999999999999999865322111112212344 457565 467654
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.089 Score=58.61 Aligned_cols=215 Identities=8% Similarity=-0.020 Sum_probs=120.0
Q ss_pred eeHH-HHHhhcCCCCCCeEEecCCC---CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-------
Q psy13453 22 YESF-KATHSLSGTPDQVRLSGLPD---SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS------- 90 (764)
Q Consensus 22 YSv~-KAa~~LGl~~~~v~~Vpvd~---~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~------- 90 (764)
|+.. .+++..|... +.||+++ .+++|+++|.+++... ++-+++-+-++.++|.+=+.+++.+
T Consensus 111 y~~~~~~~~~~g~~~---~~v~~~~~~~~~~~d~~~l~~~~~~~----~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~ 183 (364)
T PRK04781 111 FGMYAVCARLQNAPL---VEVPLVDGADGFHADVPAIVAAALAS----NAKLVFLCSPSNPAGSAIALDQIERALQALQG 183 (364)
T ss_pred hHHHHHHHHHcCCEE---EEEecCCCccCCCcCHHHHHHHHhcc----CCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCC
Confidence 5543 4568888877 9999842 3578999987655321 2235544569999999977766443
Q ss_pred CCCceeccccccc-c-c----------eeeeecC-CCccc-cccccccccCCc-------ccCCCCcccHHHHHHHHHHc
Q psy13453 91 NGPLKVGGVLRRV-Y-S----------SCLVPRG-QKSLR-TTVLFHFLFQHW-------QIPLGRRFRALKLWMTLRSY 149 (764)
Q Consensus 91 ~~wlHVDa~l~~~-y-~----------s~ll~rd-~~~l~-~~~s~~~d~~d~-------tle~SRr~~ALklWatL~~l 149 (764)
+.|+.+|.+.... + . .++..+. .+.+- ..+...|-.+.. .....-....+...++...+
T Consensus 184 ~~~iI~Deay~~f~~~~~~~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~v~~~~l~~~l~~~~~~~~~~~~~~~~a~~~l 263 (364)
T PRK04781 184 KALVVVDEAYGEFSDVPSAVGLLARYDNLAVLRTLSKAHALAAARIGSLIANAELIAVLRRCQAPYPVPTPCAALAEQAL 263 (364)
T ss_pred CcEEEEeCcchhhcCCcchHHHHhhCCCEEEEecChhhcccccceeeeeeCCHHHHHHHHhccCCCCCCHHHHHHHHHHH
Confidence 5688888864211 0 0 1111111 00000 000000100000 00000012233333333333
Q ss_pred --c-HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhc
Q psy13453 150 --G-LKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIAR 226 (764)
Q Consensus 150 --G-~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~ 226 (764)
| .+-+.+.+++..+..+++.+.|++.+++..+.++.-+-+-+++. + ..++.++|.+.
T Consensus 264 ~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~----------------~----~~~~~~~l~~~ 323 (364)
T PRK04781 264 SAPALAVTARRVAEVRAERERLHAALAQLPGVRRVYPSQGNFLLVRFD----------------D----AEAAFQALLAA 323 (364)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcC----------------C----HHHHHHHHHHC
Confidence 3 34456667777777888999999988875445555444334331 1 24678888899
Q ss_pred CcEEEEeceeC-CeeEEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13453 227 KVIYIVKGSFQ-DRLFMRFAICSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 227 G~~~vs~t~l~-g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~ 267 (764)
|..+....... ...++|+++. ++++.+.+++.++++.
T Consensus 324 gI~v~~~~~~~~~~~~~Ris~~----~~~~~~~l~~al~~~~ 361 (364)
T PRK04781 324 GVVVRDQRAAPRLSDALRITLG----TPEQNDRVLAALQRTQ 361 (364)
T ss_pred CeEEeeCCCCCCCCCeEEEeCC----CHHHHHHHHHHHHHHH
Confidence 98776554332 2468999887 4678888988887753
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0065 Score=66.07 Aligned_cols=125 Identities=19% Similarity=0.239 Sum_probs=86.2
Q ss_pred EEecCCcchhHHHHH-HhCCCceEEEecC----------CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcc---c
Q psy13453 634 AYTSDQSNSSVEKSA-IIGDVPVRQLRSD----------DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTC---A 699 (764)
Q Consensus 634 i~~S~~aH~Sv~kAa-~~lGl~v~~Vp~d----------~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~G---a 699 (764)
+.+.+..|+-.-++- ...|.-.+.|+++ -.|.+|++.|++.|++...+ .+|.++.....++..| +
T Consensus 126 ~~~~sN~~FdTTr~h~~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~-nvp~I~~tiT~NsagGQpVS 204 (471)
T COG3033 126 MVAFSNYHFDTTRGHIQINGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGAD-NVPYIVLTITNNSAGGQPVS 204 (471)
T ss_pred ccccccceecchhHHHHhcCCccccccccccccccccCCCCCccCHHHHHHHHHHhCcc-cCcEEEEEEeccccCCCcch
Confidence 445567777766663 3345545555553 35789999999999886543 3576655555555555 5
Q ss_pred cccHHHHHHHHHhcCCEEEEeccc-cccccccc----hhhhh------hcCCCcccEEEEcCCccCCCCcC
Q psy13453 700 FDNLEELGPICQEYNIWLHVDAAY-AGSALLLP----EYAHL------KRGLEYVDSFDFNTHKWLLVNFD 759 (764)
Q Consensus 700 iDpl~eIa~i~~~~glwLHVDaA~-Gg~~l~~~----~~r~~------l~gie~aDSit~d~HK~l~~P~~ 759 (764)
.+++.++++||++|++.+..|+|- +=.+.|.. .|+.. -.-++.||-++.|+-|=..++.|
T Consensus 205 m~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~lvnmG 275 (471)
T COG3033 205 MANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGLVNMG 275 (471)
T ss_pred HHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhhhheeeccccceeccc
Confidence 689999999999999999999983 33444442 22221 12245799999999999988876
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.1 Score=60.07 Aligned_cols=172 Identities=13% Similarity=0.024 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
+..+.++.+.|++++.... ....|+++|||||..|++.||.....+ +..+ ++.++.....-
T Consensus 73 ~~~~~~lae~L~~~~p~~~---------~~v~f~~sGsEAve~AlklAr~~~~~r-g~t~---------r~~ii~~~~~y 133 (447)
T PRK06917 73 SEPAEKLAKKLSDLSPGDL---------NWSFFVNSGSEANETAMKIAIQHFQER-GIQG---------KHKILSRWMSY 133 (447)
T ss_pred CHHHHHHHHHHHHhCCCCC---------CEEEEeCChHHHHHHHHHHHHHHHHhc-CCCC---------CCEEEEECCCc
Confidence 4556678888888774321 246899999999999999999865322 1110 12234444445
Q ss_pred chhHHHHHHhCCC------------ceEEEecCCCCc------------ccHHHHHHHHHHhhhcCCCceEEEEeeccCC
Q psy13453 641 NSSVEKSAIIGDV------------PVRQLRSDDNGV------------LRGDALLTAVKEDLAKGLIPCCLIATLGTTG 696 (764)
Q Consensus 641 H~Sv~kAa~~lGl------------~v~~Vp~d~~g~------------md~~~Le~~I~~~~~~G~~p~~VvataGTT~ 696 (764)
|=...-+..+.|. .+..+|.....+ -+.+.|++.+++.. +..+.+|++---...
T Consensus 134 HG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~--~~~iAAvi~EPi~g~ 211 (447)
T PRK06917 134 HGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATELETAIERIG--AEHIAAFIAEPIIGA 211 (447)
T ss_pred CCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChHHHHHHHHHHHHHHHHhcC--CCceEEEEEeccccC
Confidence 5333333333221 123333211111 13456677765321 123455554432222
Q ss_pred cc-c----cccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCC
Q psy13453 697 TC-A----FDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLV 756 (764)
Q Consensus 697 ~G-a----iDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~ 756 (764)
.| . -+=+++|.++|++||+.|++|-.+.|+-....-+....-|+ ..|-+++ -|.++.
T Consensus 212 ~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv-~PDi~~~--gK~l~~ 273 (447)
T PRK06917 212 AGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGV-EPDIMTL--GKGLGA 273 (447)
T ss_pred cCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCC-CCCEEEe--eehhcc
Confidence 22 2 24588999999999999999999887423222222222355 3676555 676654
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.08 Score=59.54 Aligned_cols=224 Identities=8% Similarity=0.026 Sum_probs=122.0
Q ss_pred eeeHHHHHhhcCCCCCCeEEe-cCCC-CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccC---chhhhc-----
Q psy13453 21 IYESFKATHSLSGTPDQVRLS-GLPD-SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQS---LNAPVS----- 90 (764)
Q Consensus 21 ~YSv~KAa~~LGl~~~~v~~V-pvd~-~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDp---i~~ia~----- 90 (764)
+.+...++..+|... +.+ ++++ .+++|+++|++++.+. +.+++-+-++-++|.+=+ ++++++
T Consensus 127 y~~~~~~~~~~g~~~---v~~~~~~~~~~~~d~~~l~~~~~~~-----~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~ 198 (398)
T PRK08363 127 YPPYTGLVKFYGGVP---VEYRTIEEEGWQPDIDDIRKKITEK-----TKAIAVINPNNPTGALYEKKTLKEILDIAGEH 198 (398)
T ss_pred CcchHHHHHHcCCEE---EEeccccccCCcCCHHHHHhhCCcc-----eEEEEEECCCCCCCcCcCHHHHHHHHHHHHHc
Confidence 445667888888765 666 5654 5689999999988642 235544677888998755 666654
Q ss_pred CCCceeccccccc-c----ceee-eecCCCcc-ccccccccccCC----ccc------------------C-CCCcccHH
Q psy13453 91 NGPLKVGGVLRRV-Y----SSCL-VPRGQKSL-RTTVLFHFLFQH----WQI------------------P-LGRRFRAL 140 (764)
Q Consensus 91 ~~wlHVDa~l~~~-y----~s~l-l~rd~~~l-~~~~s~~~d~~d----~tl------------------e-~SRr~~AL 140 (764)
++++.+|.+.... | .++. +....... -.+|+-.+-... |-+ . ..-....+
T Consensus 199 ~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~ 278 (398)
T PRK08363 199 DLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATGWRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTP 278 (398)
T ss_pred CeEEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchhccCCccceEEEEEEeCcHHHHHHHHHHHHHHhcccccCChH
Confidence 7888888853210 0 0100 00000000 001110000000 000 0 00012222
Q ss_pred HHHHHHHHc--cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHH
Q psy13453 141 KLWMTLRSY--GLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKA 218 (764)
Q Consensus 141 klWatL~~l--G~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~ 218 (764)
..+++...+ ..+-+++..++..+..+++.+.+++++++++ ..|+-+.+.|--.|... ..+. ...
T Consensus 279 ~q~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~-~~p~g~~~~~~~l~~~~------------~~~~-~~~ 344 (398)
T PRK08363 279 AQFAAIAGLTGPMDYLEEYMKKLKERRDYIYKRLNEIPGIST-TKPQGAFYIFPRIEEGP------------WKDD-KEF 344 (398)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhcCCCCEe-cCCCeEEEEEEEeccCC------------CCCH-HHH
Confidence 233333333 3455566666777777888899998888774 56777777772222100 0011 123
Q ss_pred HHHHHHhcCcEEEEecee--CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 219 VYDRIIARKVIYIVKGSF--QDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 219 L~~~L~~~G~~~vs~t~l--~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
+.+.|.+.|......+.. .+..++|++++. ++++++..++.|+++.++
T Consensus 345 ~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~---~~~~l~~~l~~l~~~~~~ 394 (398)
T PRK08363 345 VLDVLHEAHVLFVHGSGFGEYGAGHFRLVFLP---PVEILEEAMDRFEEFMRE 394 (398)
T ss_pred HHHHHHhCCEEEeCchhhCCCCCCeEEEEecC---CHHHHHHHHHHHHHHHHH
Confidence 345567788765544433 235689999864 478888888888776543
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.021 Score=65.34 Aligned_cols=134 Identities=16% Similarity=0.120 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
...+.++.+.|.+++... ....|+.+|||||..|+++||.... + +.++.+....
T Consensus 87 ~~~~~~la~~l~~~~p~~----------~~v~f~~sGseA~e~AlklAr~~tg-r---------------~~i~~~~~~~ 140 (431)
T PRK06209 87 SAIELDAAESFLELIDGA----------DMVKFCKNGSDATSAAVRLARAYTG-R---------------DLVARCADHP 140 (431)
T ss_pred CHHHHHHHHHHHHhCCcc----------ceEEEecCHHHHHHHHHHHHHHHhC-C---------------CeEEEeccCc
Confidence 345556777888876321 1367999999999999999997621 1 1111110111
Q ss_pred chhHHHH---HH--hCCCc--eE--EEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHH
Q psy13453 641 NSSVEKS---AI--IGDVP--VR--QLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQ 711 (764)
Q Consensus 641 H~Sv~kA---a~--~lGl~--v~--~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~ 711 (764)
..+.... .. ..|.. +. .+.... =|+++|++.+++. +..+.+|+.-......+..+.+++|.++|+
T Consensus 141 ~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~d~~~l~~~l~~~---~~~~aavi~Epv~g~~~~~~~l~~l~~lc~ 214 (431)
T PRK06209 141 FFSTDDWFIGTTPMSAGIPASVSALTVTFRY---NDIASLEALFEDH---PGRIACVILEPATADEPQDGFLHEVRRLCH 214 (431)
T ss_pred cccccccccccCCCCCCCChhHhccccccCC---CCHHHHHHHHHhC---CCCEEEEEEccccCCCCCHHHHHHHHHHHH
Confidence 1010000 00 01110 00 111111 1789999988642 122334443222222334455999999999
Q ss_pred hcCCEEEEecccccc
Q psy13453 712 EYNIWLHVDAAYAGS 726 (764)
Q Consensus 712 ~~glwLHVDaA~Gg~ 726 (764)
+||+.|++|-++.|.
T Consensus 215 ~~g~lLI~DEv~tG~ 229 (431)
T PRK06209 215 ENGALFILDEMITGF 229 (431)
T ss_pred HcCCEEEEEcccccC
Confidence 999999999998664
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.091 Score=58.61 Aligned_cols=218 Identities=11% Similarity=0.044 Sum_probs=119.2
Q ss_pred eHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-------CCCce
Q psy13453 23 ESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-------NGPLK 95 (764)
Q Consensus 23 Sv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-------~~wlH 95 (764)
++...+..+|... +.||.+++ .+|++++++++.+. ++-+++-+-+..++|.+=|.+++.+ +.|+-
T Consensus 120 ~~~~~~~~~g~~~---~~vp~~~~-~~~~~~l~~~~~~~----~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~lI 191 (369)
T PRK08153 120 TFNYHVAGFGGRL---VTVPYRDD-REDLDALLDAARRE----NAPLVYLANPDNPMGSWHPAADIVAFIEALPETTLLV 191 (369)
T ss_pred HHHHHHHHcCCeE---EEeeCCCC-CCCHHHHHHHhccc----CCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEE
Confidence 3555788888766 88998766 58999988776532 1225544679999999988777543 56776
Q ss_pred eccccccc-c-ceee-eecC-CCc-cccccccccc---------cCCc-------ccCCCCcccHHHHHHHHHHccHHH-
Q psy13453 96 VGGVLRRV-Y-SSCL-VPRG-QKS-LRTTVLFHFL---------FQHW-------QIPLGRRFRALKLWMTLRSYGLKG- 153 (764)
Q Consensus 96 VDa~l~~~-y-~s~l-l~rd-~~~-l~~~~s~~~d---------~~d~-------tle~SRr~~ALklWatL~~lG~eG- 153 (764)
+|-..... + +++. +... +.. .-.+||=.+. .+.. .+...-....+..+++...+..+.
T Consensus 192 ~DE~y~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~v~~~~~~~~l~~~~~~~~~s~~~q~~~~~~l~~~~~ 271 (369)
T PRK08153 192 LDEAYCETAPAGAAPPIDTDDPNVIRMRTFSKAYGLAGARVGYAIGAPGTIKAFDKVRNHFGMNRIAQAAALAALKDQAY 271 (369)
T ss_pred EeCchhhhcCcccchhhhhcCCCEEEEecchHhccCcchheeeeecCHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCHHH
Confidence 66643111 1 1110 0000 000 0001110000 0000 000001234455566555554334
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEe
Q psy13453 154 LQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVK 233 (764)
Q Consensus 154 y~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~ 233 (764)
+++..+..-+..+++.+.+++. ++... ++..+.+-++.. ....+-.++.++|.+.|..+-..
T Consensus 272 ~~~~~~~~~~~r~~~~~~L~~~-g~~~~-p~~~~f~~~~~~----------------~~~~~a~~l~~~l~~~Gi~v~~p 333 (369)
T PRK08153 272 LAEVVGKIAAARDRIAAIARAN-GLTPL-PSATNFVAIDCG----------------RDGAFARAVLDGLIARDIFVRMP 333 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCccC-CCcCcEEEEECC----------------CCcccHHHHHHHHHHCCeEEeeC
Confidence 3444455555666777778765 66533 344443333221 01123468889999999865322
Q ss_pred ceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 234 GSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 234 t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
..-.+..++|+++. ++++++.+++.+++..+.+
T Consensus 334 ~~~~~~~~iRis~~----~~~~~~~~~~al~~~~~~~ 366 (369)
T PRK08153 334 GVAPLDRCIRVSCG----PDEELDLFAEALPEALEAA 366 (369)
T ss_pred CCCCCCCeEEEecC----CHHHHHHHHHHHHHHHHHh
Confidence 22234568999877 5889999999998876543
|
|
| >KOG0634|consensus | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.017 Score=64.25 Aligned_cols=147 Identities=13% Similarity=0.110 Sum_probs=103.1
Q ss_pred cccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCce
Q psy13453 553 SWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKL 632 (764)
Q Consensus 553 ~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~ 632 (764)
.|..+...-++-..+.+.....++.|.. ..-+.++|+|.|.+...++..+.++ ..
T Consensus 95 QYg~s~G~peLl~fik~h~~~~ih~p~~------~~wdiiit~G~t~~l~~~l~~~~N~-------------------gd 149 (472)
T KOG0634|consen 95 QYGQSSGIPELLLFIKDHNRPTIHAPPY------KNWDIIITNGNTDGLFKVLRTLINR-------------------GD 149 (472)
T ss_pred ccccccCcHHHHHHHHHhccccccCCCC------CCceEEEecCCchHHHHHHHHhhcC-------------------CC
Confidence 3444555555555555544444555442 2246789999999998888877654 12
Q ss_pred EEEecCCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhc--C-CCc-eEEEEeeccCCccccccH---HH
Q psy13453 633 VAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAK--G-LIP-CCLIATLGTTGTCAFDNL---EE 705 (764)
Q Consensus 633 vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~--G-~~p-~~VvataGTT~~GaiDpl---~e 705 (764)
.|++-+.+-.+-..+.+.+|+.++.|+.|++| |+++.|++.+..-.-. | ..| ++-.+-.|.+.||.-=.+ ++
T Consensus 150 ~vlie~~ty~~AL~s~~a~gv~~ipv~md~~G-i~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~ 228 (472)
T KOG0634|consen 150 HVLIEEYTYPSALQSMEALGVKIIPVKMDQDG-IDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKK 228 (472)
T ss_pred ceEEecccchHHHHhccccCceEEeccccCCC-CCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHH
Confidence 57888888888888888999888888887776 9999999999754322 2 224 222334477888877554 56
Q ss_pred HHHHHHhcCCEEEEeccccc
Q psy13453 706 LGPICQEYNIWLHVDAAYAG 725 (764)
Q Consensus 706 Ia~i~~~~glwLHVDaA~Gg 725 (764)
|.++|++|++.+.-|--|.-
T Consensus 229 iy~LArKyDfLIVeDdpYy~ 248 (472)
T KOG0634|consen 229 IYQLARKYDFLIVEDDPYYF 248 (472)
T ss_pred HHHHHHHcCEEEEecCccce
Confidence 99999999999999998765
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0017 Score=71.45 Aligned_cols=109 Identities=17% Similarity=0.127 Sum_probs=35.0
Q ss_pred HHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCC-----ccccccHHHHHHHHHhcCCEEE
Q psy13453 644 VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTG-----TCAFDNLEELGPICQEYNIWLH 718 (764)
Q Consensus 644 v~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~-----~GaiDpl~eIa~i~~~~glwLH 718 (764)
+....+..|.+++.|-+ ..+-.+++.+++|.++++ ++.-..-|+. ++.+ +++++++++++||++++
T Consensus 104 ip~vm~~sGa~lvEVGt--tN~t~~~Dye~AI~e~Ta------~ll~Vh~Sn~~i~GFt~~~-~~~el~~la~~~~lp~i 174 (367)
T PF03841_consen 104 IPDVMRQSGARLVEVGT--TNRTHLSDYEKAITENTA------ALLKVHTSNFRIQGFTGEV-SLEELAELAKEHGLPVI 174 (367)
T ss_dssp ------------------------------------------------------------------HHHHHHHHHT--EE
T ss_pred ccccccccccccccccc--cccccccccccccccccc------ccccccccccccccccccc-cHHHHHHHHhhcCCcEE
Confidence 33444456667766654 457778999999998865 4443333332 2333 79999999999999999
Q ss_pred Eeccccccccccchh-----hhhhcCC-CcccEEEEcCCccCCCCcCceee
Q psy13453 719 VDAAYAGSALLLPEY-----AHLKRGL-EYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 719 VDaA~Gg~~l~~~~~-----r~~l~gi-e~aDSit~d~HK~l~~P~~~g~l 763 (764)
+|.+-|...=+ ..+ ....+-+ ..||-+++|+.|.++.|. +|++
T Consensus 175 ~DlgsG~l~dl-~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGPQ-aGiI 223 (367)
T PF03841_consen 175 VDLGSGLLVDL-SPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGPQ-AGII 223 (367)
T ss_dssp EE-TTHHHHHH-HTT----------CCCCT-SEEEEETTSSSSS-S--EEE
T ss_pred EECCCCCCcCc-ccccCccccHHHHHhhcCCCEEEEECCCcCCCCC-eEEE
Confidence 99986653211 111 1111122 247999999999999998 6876
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.11 Score=60.13 Aligned_cols=177 Identities=15% Similarity=0.055 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEe-CChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQ-STASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfT-sGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
..+.++.+.|.+++. ..+. .....+|+ .+|||||-.|++.||... .+ +-+|.....-
T Consensus 106 ~~~~~la~~L~~~~p--~~~~----~~~~v~f~~~SGSEAve~AlklAr~~t-gr---------------~~ii~~~~~y 163 (464)
T PRK06938 106 PVKDQFVQDLFASLP--EAFA----REAKIQFCGPTGTDAVEAALKLVKTAT-GR---------------STVLSFQGGY 163 (464)
T ss_pred HHHHHHHHHHHHhCc--cccc----ccceEEEeCCCcHHHHHHHHHHHHHhh-CC---------------CeEEEECCcc
Confidence 444455566666653 1110 00123465 699999999999999652 11 1234444445
Q ss_pred chhHHHHHHhCC----------C--ceEEEecCCCCc------------ccHHHHHHHHHHhhhcCCCceEEEEeeccCC
Q psy13453 641 NSSVEKSAIIGD----------V--PVRQLRSDDNGV------------LRGDALLTAVKEDLAKGLIPCCLIATLGTTG 696 (764)
Q Consensus 641 H~Sv~kAa~~lG----------l--~v~~Vp~d~~g~------------md~~~Le~~I~~~~~~G~~p~~VvataGTT~ 696 (764)
|=...-+..+.| + ++..+|...+.+ -+.+.+++.+++.......+.+|++---...
T Consensus 164 HG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~ 243 (464)
T PRK06938 164 HGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGE 243 (464)
T ss_pred CCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCC
Confidence 533333333211 1 345565432211 2467788888643211123445554433333
Q ss_pred cccc----ccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 697 TCAF----DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 697 ~Gai----Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
.|.+ +=++++.++|++||+.|++|-.+.|+-....-+....-|+ ..|-+++ -|.++.-+..|++
T Consensus 244 gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv-~PDiv~~--gKglggG~PlsAv 311 (464)
T PRK06938 244 GGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGI-IPDVVVL--SKAIGGSLPLAVV 311 (464)
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCC-CCCEEEe--eccccCCCceEEE
Confidence 3544 3488999999999999999999877533222222222355 4787777 4655543445543
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.15 Score=58.50 Aligned_cols=170 Identities=15% Similarity=0.090 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
....++.+.|++++..+- ....|+.+|||||-.|++.||.....+ +..+ ++-+|.....-|
T Consensus 73 ~~~~~lae~L~~~~p~~~---------~~v~f~~sGsEAve~AlklAr~~~~~~-g~~~---------r~~Ii~~~~~YH 133 (443)
T PRK07483 73 EPAEALADRLVAAAPAGL---------EHVYFVSGGSEAVEAALKLARQYFVEI-GQPQ---------RRHFIARRQSYH 133 (443)
T ss_pred HHHHHHHHHHHHhCCCCC---------CEEEEcCCcHHHHHHHHHHHHHHHHhc-CCCC---------CcEEEEECCCcC
Confidence 344556677777763111 246799999999999999999764321 1100 111333344445
Q ss_pred hhHHHHHHhCC------------CceEEEecCCCCcc-------------cHHHHHHHHHHhhhcCCCceEEEEeeccC-
Q psy13453 642 SSVEKSAIIGD------------VPVRQLRSDDNGVL-------------RGDALLTAVKEDLAKGLIPCCLIATLGTT- 695 (764)
Q Consensus 642 ~Sv~kAa~~lG------------l~v~~Vp~d~~g~m-------------d~~~Le~~I~~~~~~G~~p~~VvataGTT- 695 (764)
=...-+..+.| ..+..+|.....+- .+++|++.+.+. ....+.+|++---.-
T Consensus 134 G~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~iAAvivEPiqg~ 211 (443)
T PRK07483 134 GNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDEAYGQRLADELEAKILEL--GPDTVAAFVAETVVGA 211 (443)
T ss_pred CcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhc--CCCceEEEEEeCcccC
Confidence 33222222211 12344443211111 135666656431 112233333322111
Q ss_pred Ccccccc----HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCC
Q psy13453 696 GTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLL 755 (764)
Q Consensus 696 ~~GaiDp----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~ 755 (764)
.-|.+-+ +++|+++|++||+.|++|-.+.|+-....-+.+..-|+ ..|-+++ -|.++
T Consensus 212 ~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv-~PDiv~~--gK~l~ 272 (443)
T PRK07483 212 TAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGV-APDLVTI--AKGLG 272 (443)
T ss_pred cCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHHhhcCC-CCCeeee--hhhhc
Confidence 1244443 89999999999999999999887533222122222345 3676666 45554
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.069 Score=60.08 Aligned_cols=224 Identities=14% Similarity=0.043 Sum_probs=137.1
Q ss_pred ccccCCcceeeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCc-ccccccCchhhh
Q psy13453 11 AYPSETLSLLIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRT-LHQDIQSLNAPV 89 (764)
Q Consensus 11 ~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT-~~G~iDpi~~ia 89 (764)
+.-|+- |.|.|+..++++.+-.. +.-+ .-|+++||+.|++++..+..+.+|.|=|-+ +.|.+=||.++.
T Consensus 125 li~~D~--lnHASiidG~rls~a~~---~~f~-----HnD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiApL~~l~ 194 (388)
T COG0156 125 LIFSDE--LNHASIIDGIRLSRAEV---RRFK-----HNDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAPLPELV 194 (388)
T ss_pred EEEEec--hhhhhHHHHHHhCCCcE---EEec-----CCCHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCCHHHHH
Confidence 334444 38999999999877655 4433 368999999999976554345666666654 679999999988
Q ss_pred c-----CCCceeccccccc-cc----e---e--eeecCCCcccccccccc-----------ccCCcccCCCC--------
Q psy13453 90 S-----NGPLKVGGVLRRV-YS----S---C--LVPRGQKSLRTTVLFHF-----------LFQHWQIPLGR-------- 135 (764)
Q Consensus 90 ~-----~~wlHVDa~l~~~-y~----s---~--ll~rd~~~l~~~~s~~~-----------d~~d~tle~SR-------- 135 (764)
+ +.|+=||=.+... ++ + . +..++...+..+|+-.+ .+.||-.+-+|
T Consensus 195 ~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~Gg~v~g~~~~~d~L~~~ar~~ifStal 274 (388)
T COG0156 195 ELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSGGYIAGSAALIDYLRNRARPFIFSTAL 274 (388)
T ss_pred HHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhcccCceeeCcHHHHHHHHHhCCceeccCCC
Confidence 7 8888777754222 11 0 1 11122223333332100 11122222222
Q ss_pred -cccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccH
Q psy13453 136 -RFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDND 214 (764)
Q Consensus 136 -r~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~ 214 (764)
+..+...-++++.+= -..++.++.-+++++|...++. -++.+ .+....|+.+-. +.+.
T Consensus 275 pP~~aaa~~~al~~l~--~~~~~r~~L~~~~~~~~~~~~~-~~~~~-~~s~s~I~pv~~-----------------gd~~ 333 (388)
T COG0156 275 PPAVAAAALAALRILE--EGPERRERLQELAAFFRSLLKA-LGLVL-LPSESPIIPVIL-----------------GDEE 333 (388)
T ss_pred CHHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHh-cCCcc-CCCCCCeeeeEe-----------------CCHH
Confidence 333334445555542 4556677777888888866664 35554 455566776643 2334
Q ss_pred HHHHHHHHHHhcCcEEE--E-eceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 215 LNKAVYDRIIARKVIYI--V-KGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 215 ~n~~L~~~L~~~G~~~v--s-~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
...++.+.|.++|.... . .|.-.|..-||+|++--| ++++|+.+++.+.++
T Consensus 334 ~a~~~s~~l~~~Gi~v~~i~~PTVp~gtarlRi~lta~h-t~~~I~~l~~~l~~~ 387 (388)
T COG0156 334 RALEASRALLEEGIYVSAIRPPTVPKGTARLRITLTAAH-TEEDIDRLAEALSEV 387 (388)
T ss_pred HHHHHHHHHHHCCeeEeeecCCCCCCCcceEEEEecCCC-CHHHHHHHHHHHHhh
Confidence 56788899999987432 2 333367788999887777 688999999988764
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.096 Score=59.06 Aligned_cols=226 Identities=10% Similarity=-0.011 Sum_probs=122.4
Q ss_pred eeeHHHHHhhcCCCCCCeEEecCCC--CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccC---chhhhc-----
Q psy13453 21 IYESFKATHSLSGTPDQVRLSGLPD--SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQS---LNAPVS----- 90 (764)
Q Consensus 21 ~YSv~KAa~~LGl~~~~v~~Vpvd~--~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDp---i~~ia~----- 90 (764)
+..+..++..+|... +.+|+|. ++.+|+++|++++++. +-+++-+-++-++|.+=+ ++++++
T Consensus 129 y~~~~~~~~~~g~~~---v~~~~~~~~~~~~d~~~l~~~~~~~-----~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~ 200 (404)
T PRK09265 129 YPLWTAAVSLSGGKP---VHYLCDEEAGWFPDLDDIRSKITPR-----TKAIVIINPNNPTGAVYSKELLEEIVEIARQH 200 (404)
T ss_pred CcChHHHHHHcCCEE---EEEecccccCCCCCHHHHHHhcccc-----ceEEEEECCCCCCCcCCCHHHHHHHHHHHHHC
Confidence 345677788888766 7788863 5789999999988642 224544567889998766 666654
Q ss_pred CCCceecccccc------ccceee-eecCCCcc-ccccc---------ccccc--CCc-----------ccCCC-CcccH
Q psy13453 91 NGPLKVGGVLRR------VYSSCL-VPRGQKSL-RTTVL---------FHFLF--QHW-----------QIPLG-RRFRA 139 (764)
Q Consensus 91 ~~wlHVDa~l~~------~y~s~l-l~rd~~~l-~~~~s---------~~~d~--~d~-----------tle~S-Rr~~A 139 (764)
++++-+|..... .+.++. +..+...+ -.+|+ ..+-. .+. .+... -....
T Consensus 201 ~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (404)
T PRK09265 201 NLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSKAYRVAGFRVGWMVLSGPKKHAKGYIEGLDMLASMRLCANV 280 (404)
T ss_pred CCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecchhhccCcccceEEEEEeCchHHHHHHHHHHHHHhccccCCCc
Confidence 778888874311 111100 00000000 00011 00000 000 00000 02223
Q ss_pred HHHHHHHHHccH-HHHHHHH---HHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHH
Q psy13453 140 LKLWMTLRSYGL-KGLQAYL---RKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDL 215 (764)
Q Consensus 140 LklWatL~~lG~-eGy~~~i---~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~ 215 (764)
+..+++...++. +.+.+.+ ++..+..+++.+.+++.+++++ .+|+-+..+|-..|..... ..+ -
T Consensus 281 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~-~~p~~g~~l~~~~~~~~~~----------~~~-~ 348 (404)
T PRK09265 281 PAQHAIQTALGGYQSINELILPGGRLYEQRDRAWELLNAIPGVSC-VKPKGALYAFPKLDPKVYP----------IHD-D 348 (404)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-cCCCcceEEEEEecccccC----------CCC-H
Confidence 344444444432 2233333 3556667778888888878764 5566565555222211000 001 1
Q ss_pred HHHHHHHHHhcCcEEEEecee--CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 216 NKAVYDRIIARKVIYIVKGSF--QDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 216 n~~L~~~L~~~G~~~vs~t~l--~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
...+.+.+.+.|..+.-.... .+..++|+++. ++.+.+++.++.|.++.+.
T Consensus 349 ~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~~---~~~e~l~~~l~rl~~~l~~ 401 (404)
T PRK09265 349 EQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVTL---PRVDDLEEAIGRIGRFLSG 401 (404)
T ss_pred HHHHHHHHHhCCEEEECchhhCCCCCCeEEEEeC---CCHHHHHHHHHHHHHHHHH
Confidence 235677788888866544433 23568999985 5688999999888876543
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.11 Score=58.59 Aligned_cols=215 Identities=9% Similarity=-0.041 Sum_probs=113.7
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCc
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPL 94 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wl 94 (764)
.|.|+.....+..-+ ..++.+|.+ |+++|++++++. +.++|-+-|..++|.+-|++++.+ ++++
T Consensus 144 ~H~s~~~~~~~~~~~-~~v~~~~~~-----d~~~l~~~~~~~-----~~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~l 212 (402)
T PRK07505 144 AHASLNILKGICADE-TEVETIDHN-----DLDALEDICKTN-----KTVAYVADGVYSMGGIAPVKELLRLQEKYGLFL 212 (402)
T ss_pred hhHhHHhhhhhhhcC-CeEEEeCCC-----CHHHHHHHHhcC-----CCEEEEEecccccCCcCCHHHHHHHHHHcCCEE
Confidence 677764322222211 256777763 899999988642 235566778889999998888775 8889
Q ss_pred eecccccc----ccce-e----ee--ecCCC----cccccccc--------ccc--------cCCcccCCCCc-ccHHHH
Q psy13453 95 KVGGVLRR----VYSS-C----LV--PRGQK----SLRTTVLF--------HFL--------FQHWQIPLGRR-FRALKL 142 (764)
Q Consensus 95 HVDa~l~~----~y~s-~----ll--~rd~~----~l~~~~s~--------~~d--------~~d~tle~SRr-~~ALkl 142 (764)
.+|.+... ..+. + +- ..+.- ++..+|.. ..+ ...++..++.. .....+
T Consensus 213 i~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~Gg~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~ 292 (402)
T PRK07505 213 YIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGASGGVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAI 292 (402)
T ss_pred EEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhccCeEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHH
Confidence 99997411 1111 0 00 01100 01111110 000 11223333432 233344
Q ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHH
Q psy13453 143 WMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDR 222 (764)
Q Consensus 143 WatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~ 222 (764)
.+++..+.++.+.++.+...+..+.+.+.+... ...+-+.++.+.. .......++.++
T Consensus 293 ~a~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~g~~~~i~~~~~-----------------~~~~~~~~~~~~ 350 (402)
T PRK07505 293 LASAEIHLSEELDQLQQKLQNNIALFDSLIPTE-----QSGSFLPIRLIYI-----------------GDEDTAIKAAKQ 350 (402)
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHHHHhc-----CCCCCCCEEEEEe-----------------CCHHHHHHHHHH
Confidence 566666666666666555545444444333221 1112222222211 001123678899
Q ss_pred HHhcCcEEEEec--ee-CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13453 223 IIARKVIYIVKG--SF-QDRLFMRFAICSSQTEESDVQLGWNEIRTATE 268 (764)
Q Consensus 223 L~~~G~~~vs~t--~l-~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~ 268 (764)
|.++|....... .+ .+..+||+++. ...++++++.+++.|+++..
T Consensus 351 l~~~Gi~v~~~~~p~~~~~~~~lRi~~~-~~~t~eei~~~~~~l~~~l~ 398 (402)
T PRK07505 351 LLDRGFYTSPVFFPVVAKGRAGLRIMFR-ASHTNDEIKRLCSLLKEILD 398 (402)
T ss_pred HHHCCCeEeeecCCCCCCCCceEEEecC-ccCCHHHHHHHHHHHHHHHH
Confidence 999998654331 11 23468999644 44578899999999988753
|
|
| >KOG3843|consensus | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.007 Score=63.20 Aligned_cols=121 Identities=22% Similarity=0.187 Sum_probs=87.0
Q ss_pred EEecCCcchhHHHHHHhCCCceEEEec--C-CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCc---cccccHHHHH
Q psy13453 634 AYTSDQSNSSVEKSAIIGDVPVRQLRS--D-DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGT---CAFDNLEELG 707 (764)
Q Consensus 634 i~~S~~aH~Sv~kAa~~lGl~v~~Vp~--d-~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~---GaiDpl~eIa 707 (764)
|+--..-..|..|+.-..|+..+.|.. | +.-+-|++++++.|++... =++.+..-||.. -.-|++++|+
T Consensus 106 iiw~ridqks~~ksi~~agfepiiie~i~d~d~l~tdleav~~~iee~g~-----dcilci~sttscfapr~pd~leaia 180 (432)
T KOG3843|consen 106 IIWLRIDQKSCFKSIIHAGFEPIIIENILDGDELITDLEAVEAIIEELGE-----DCILCIHSTTSCFAPRSPDNLEAIA 180 (432)
T ss_pred EEEEecchHHHHHHHHhcCCCceeeeccccchHHHHhHHHHHHHHHHhCC-----ceEEEEeecccccCCCCCchHHHHH
Confidence 445566778888888889997555553 2 3456799999999987532 244444445543 4569999999
Q ss_pred HHHHhcCCEEEEeccccccccccchhhhhh---cCCCcccEEEEcCCccCCCCcCcee
Q psy13453 708 PICQEYNIWLHVDAAYAGSALLLPEYAHLK---RGLEYVDSFDFNTHKWLLVNFDCSA 762 (764)
Q Consensus 708 ~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l---~gie~aDSit~d~HK~l~~P~~~g~ 762 (764)
.||..|+++-.|.-|||.- +.+.-+++ ....|.|.+.-+..|.+.+|.|-.+
T Consensus 181 aica~~diphivnnayglq---see~i~~iaa~~~~grida~vqsldknf~vpvggai 235 (432)
T KOG3843|consen 181 AICAAHDIPHIVNNAYGLQ---SEECIHKIAAAAECGRIDAFVQSLDKNFMVPVGGAI 235 (432)
T ss_pred HHHHccCchhhhccccccc---hHHHHHHHHHHhhhccHHHHHHHhhhcceeecchhH
Confidence 9999999999999999963 33322222 2345779999999999999988544
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.1 Score=60.48 Aligned_cols=174 Identities=16% Similarity=0.082 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
....++.+.|.+++.-... ..+-....|+.+|||||-.|+++||.....+ +.. .++-+|.....-|
T Consensus 107 ~~~~~lae~L~~~~p~~~~----~~~~~~v~f~~sGSEAvE~AlKlAr~~~~~~-g~~---------~r~~ii~~~~syH 172 (472)
T PRK08742 107 EPAVQLAEQLLAIAPRQDG----RAPLSKVFYADNGSAGVEVALKMAFHYFHNR-GEH---------RRTRFIALENGYH 172 (472)
T ss_pred HHHHHHHHHHHHhCCCccc----CCCCCEEEEeCCchHHHHHHHHHHHHHHHhc-CCC---------CCcEEEEECCCcC
Confidence 4455677778887632100 0000246899999999999999999875332 110 0122444555555
Q ss_pred hhHHHHHHhCCC------------ceEEEecCCCCc------------ccHHHHHHHHHHhhhcCCCceEEEEee-ccCC
Q psy13453 642 SSVEKSAIIGDV------------PVRQLRSDDNGV------------LRGDALLTAVKEDLAKGLIPCCLIATL-GTTG 696 (764)
Q Consensus 642 ~Sv~kAa~~lGl------------~v~~Vp~d~~g~------------md~~~Le~~I~~~~~~G~~p~~Vvata-GTT~ 696 (764)
=...-+..+.|. ++..+|.....+ -+++.+++.++. .+..+.+|+.-- -...
T Consensus 173 G~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~iAAvI~EPviqg~ 249 (472)
T PRK08742 173 GETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQ---SPGEICALILEPRLQCA 249 (472)
T ss_pred CCchhhhhccCCcccccccCCCCCCCEEeCCCCccccccCCCHHHHHHHHHHHHHHHHHh---CCCceEEEEEccccccC
Confidence 333333332221 234444321111 135677777752 122344554432 1222
Q ss_pred cccc----ccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCC
Q psy13453 697 TCAF----DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLL 755 (764)
Q Consensus 697 ~Gai----Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~ 755 (764)
.|.+ +=+++++++|++||+.|++|-.+.|+-....-+....-|+ ..|-+++ -|.++
T Consensus 250 gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv-~PDiv~~--gKgl~ 309 (472)
T PRK08742 250 GGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQAGV-MPDLLCL--SKGLT 309 (472)
T ss_pred CCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchHHHhcCC-CCCEEEE--ccccc
Confidence 3433 4588899999999999999999777533222222222355 4777777 56554
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.1 Score=59.71 Aligned_cols=152 Identities=14% Similarity=0.065 Sum_probs=79.9
Q ss_pred cEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCc-eE----------EE
Q psy13453 590 GGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVP-VR----------QL 658 (764)
Q Consensus 590 ~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~-v~----------~V 658 (764)
...|+.+|||||-.|++.||....+.....|. +...++-++.....-|=...-+..+.|.. .+ .+
T Consensus 105 ~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~----~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~ 180 (431)
T TIGR03251 105 HLFFIEGGALAVENALKTAFDWKSRHNQARGI----PAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRI 180 (431)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHhhcchhhcCC----CCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccC
Confidence 35799999999999999999753211000000 00001224445555554433333332210 00 01
Q ss_pred e-------cCCCC--------cccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc----ccHHHHHHHHHhcCCEEEE
Q psy13453 659 R-------SDDNG--------VLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF----DNLEELGPICQEYNIWLHV 719 (764)
Q Consensus 659 p-------~d~~g--------~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai----Dpl~eIa~i~~~~glwLHV 719 (764)
+ .+.+. .-+++++++.+.. .+..+.+|++.--....|.+ +-+++|.++|++||+.|.+
T Consensus 181 ~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~ 257 (431)
T TIGR03251 181 DNPKLTFPLDAPNLDQVIALEEEALRQARAAFAE---RPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIF 257 (431)
T ss_pred CCCcccCCccccccchhhHHHHHHHHHHHHHHHh---CCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 1 11110 0123445555542 23356677666544444554 6899999999999999999
Q ss_pred eccccccccccchhhhhhcCCCcccEEEEc
Q psy13453 720 DAAYAGSALLLPEYAHLKRGLEYVDSFDFN 749 (764)
Q Consensus 720 DaA~Gg~~l~~~~~r~~l~gie~aDSit~d 749 (764)
|-.+.|+-..-.-+....-|+ ..|-+++.
T Consensus 258 DEV~tG~GrtG~~~a~~~~gv-~PDi~~~g 286 (431)
T TIGR03251 258 DEVQTGVGLTGTAWAYQQLGV-QPDIVAFG 286 (431)
T ss_pred ecchhccCccchHHHHHhcCC-CCCEEEec
Confidence 999887422111111112344 46766653
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.06 Score=60.70 Aligned_cols=133 Identities=20% Similarity=0.099 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCC
Q psy13453 560 CTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQ 639 (764)
Q Consensus 560 ~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~ 639 (764)
-+++|.++.+.+.++++.-+ -.-|+++||||++.|+++||..-.+ +.+|-....
T Consensus 91 Pte~Ei~~Aell~~~~p~~e----------~vrfvnSGTEAtmsAiRlARa~TgR----------------~kIikF~G~ 144 (432)
T COG0001 91 PTELEVELAELLIERVPSIE----------KVRFVNSGTEATMSAIRLARAYTGR----------------DKIIKFEGC 144 (432)
T ss_pred CCHHHHHHHHHHHHhcCccc----------EEEEecchhHHHHHHHHHHHHhhCC----------------CeEEEEcCC
Confidence 46788889999999987632 2469999999999999999976321 123444444
Q ss_pred cchhHHHHHHh-------------CCC------ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc
Q psy13453 640 SNSSVEKSAII-------------GDV------PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF 700 (764)
Q Consensus 640 aH~Sv~kAa~~-------------lGl------~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai 700 (764)
-|-+.+-...- .|+ .++.+|-+ |+++|++++++. |....+|+.=---.+.|.|
T Consensus 145 YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yN-----D~~al~~~~~~~---g~~IAaVIvEPv~gn~g~i 216 (432)
T COG0001 145 YHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYN-----DLEALEEAFEEY---GDDIAAVIVEPVAGNMGVV 216 (432)
T ss_pred CCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecCC-----CHHHHHHHHHHc---CCcEEEEEeccccCCCCCC
Confidence 44333222211 122 24455544 589999998764 3345677766666667887
Q ss_pred cc----HHHHHHHHHhcCCEEEEecccccc
Q psy13453 701 DN----LEELGPICQEYNIWLHVDAAYAGS 726 (764)
Q Consensus 701 Dp----l~eIa~i~~~~glwLHVDaA~Gg~ 726 (764)
-| +++++++|++||.-|+.|-...|+
T Consensus 217 ~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGF 246 (432)
T COG0001 217 PPEPGFLEGLRELTEEHGALLIFDEVITGF 246 (432)
T ss_pred CCCHHHHHHHHHHHHHcCcEEEEecchhhc
Confidence 55 677999999999999999876654
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.16 Score=57.58 Aligned_cols=229 Identities=5% Similarity=-0.122 Sum_probs=122.0
Q ss_pred eeHHHHHhhcCCCCCCeEEecCC--CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchh---hhc-----C
Q psy13453 22 YESFKATHSLSGTPDQVRLSGLP--DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNA---PVS-----N 91 (764)
Q Consensus 22 YSv~KAa~~LGl~~~~v~~Vpvd--~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~---ia~-----~ 91 (764)
......++..|... +.+|++ +++++|+++|++++++. +.+++-+-++-++|.+=+.++ +.+ +
T Consensus 132 ~~~~~~~~~~g~~~---~~~~~~~~~~~~~d~~~l~~~~~~~-----~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~ 203 (409)
T PLN00143 132 PDVETYAIFHHLEI---RHFDLLPEKGWEVDLDAVEAIADEN-----TIAMVIINPGNPCGSVYSYEHLNKIAETARKLG 203 (409)
T ss_pred cCHHHHHHHcCCEE---EEEeccCCCCCcCCHHHHHHhcccC-----CEEEEEECCCCCCCCccCHHHHHHHHHHHHHcC
Confidence 35667788899877 888885 45689999999987542 335554557889999977554 332 7
Q ss_pred CCceeccccccc-c-----ceeeeecCC-Cc-cccccccccc---------cC-Cc---------------ccCCCCccc
Q psy13453 92 GPLKVGGVLRRV-Y-----SSCLVPRGQ-KS-LRTTVLFHFL---------FQ-HW---------------QIPLGRRFR 138 (764)
Q Consensus 92 ~wlHVDa~l~~~-y-----~s~ll~rd~-~~-l~~~~s~~~d---------~~-d~---------------tle~SRr~~ 138 (764)
+|+.+|-+.... | .+...+... .. .-.+||=.+. .. +. ....+--..
T Consensus 204 ~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRvG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 283 (409)
T PLN00143 204 ILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMIPGWGLGWLVTCDPSGLLQICEIADSIKKALNPAPFPP 283 (409)
T ss_pred CeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhcCCCccceEEEEeeCchhhhhhHHHHHHHHHHHhccCCCC
Confidence 888888753211 1 110000000 00 0001110000 00 00 000000012
Q ss_pred HHHHHHHHHHc--c-HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHH
Q psy13453 139 ALKLWMTLRSY--G-LKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDL 215 (764)
Q Consensus 139 ALklWatL~~l--G-~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~ 215 (764)
.+...+....+ + .+-|.+.+++.-+..+++.+.+++.+.+.....|+-+...|--.|.... .....
T Consensus 284 ~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~p~gg~f~w~~l~~~~~----------~~~~~- 352 (409)
T PLN00143 284 TFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKEIPCIMCPQKAEGAFFALVKLNLLLL----------EDIED- 352 (409)
T ss_pred chHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCeeEEEEEecchhhc----------CCCCC-
Confidence 23333333333 2 3445666666666677788888877654434566655544422211000 00000
Q ss_pred HHHHH-HHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHc
Q psy13453 216 NKAVY-DRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLR 272 (764)
Q Consensus 216 n~~L~-~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~ 272 (764)
..++. +.+.+.|..+.-........++|++++. ..+.+++.++.|.++.+...+
T Consensus 353 ~~~~~~~ll~~~gV~v~pg~~f~~~~~iRi~~~~---~~~~l~~al~rl~~~l~~~~~ 407 (409)
T PLN00143 353 DMEFCLKLAKEESLIILPGVTVGLKNWLRITFAV---EQSSLEDGLGRLKSFCGRHAK 407 (409)
T ss_pred HHHHHHHHHHhCCEEEeCccccCCCCeEEEEEcC---CHHHHHHHHHHHHHHHHHhcc
Confidence 23343 4556778766655545556799999984 378888888888887665443
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.056 Score=60.59 Aligned_cols=218 Identities=11% Similarity=0.036 Sum_probs=118.8
Q ss_pred eeeHHHHHhhcCCCCCCeEEecCC-CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccc---cCchhhhc-----C
Q psy13453 21 IYESFKATHSLSGTPDQVRLSGLP-DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDI---QSLNAPVS-----N 91 (764)
Q Consensus 21 ~YSv~KAa~~LGl~~~~v~~Vpvd-~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~i---Dpi~~ia~-----~ 91 (764)
+.+...+++..|... +.||++ +++.+|+++|++++++. +-+++-+-++.++|.+ ++++++++ +
T Consensus 124 y~~~~~~~~~~g~~~---~~v~~~~~~~~~d~~~l~~~l~~~-----~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~ 195 (384)
T PRK12414 124 FDSYAPIVRLQGATP---VAIKLSPEDFRVNWDEVAAAITPR-----TRMIIVNTPHNPSATVFSAADLARLAQLTRNTD 195 (384)
T ss_pred ccchHHHHHHcCCEE---EEEecCccccccCHHHHHhhcCcc-----cEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCC
Confidence 345566778888766 889998 46789999999988642 2244445689999997 66766654 7
Q ss_pred CCceeccccccc-cc-----eeeeecC-C-C-ccccccccccc------------------cCCcccCCCCcccHHHHHH
Q psy13453 92 GPLKVGGVLRRV-YS-----SCLVPRG-Q-K-SLRTTVLFHFL------------------FQHWQIPLGRRFRALKLWM 144 (764)
Q Consensus 92 ~wlHVDa~l~~~-y~-----s~ll~rd-~-~-~l~~~~s~~~d------------------~~d~tle~SRr~~ALklWa 144 (764)
+|+-+|...... |. ++.-..+ . . ..-.+||-.+. +....-........+..++
T Consensus 196 ~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~~~~l~~~l~~~~~~~~~~~s~~~q~a 275 (384)
T PRK12414 196 IVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLAPAELMDEIRKVHQFMVFSADTPMQHA 275 (384)
T ss_pred eEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccceEEEEecCHHHHHHHHHHHhheecCCCcHHHHH
Confidence 788888854211 11 1000000 0 0 00001110000 0000000112233344445
Q ss_pred HHHHccH-HHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEE-EeeccccccccccccCccCCccHHHHHHHHH
Q psy13453 145 TLRSYGL-KGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCF-RLKVRFWDKLDNLFGTISFGDNDLNKAVYDR 222 (764)
Q Consensus 145 tL~~lG~-eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~F-ry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~ 222 (764)
....+-. +.+.+..+...+..+++.+.|+++ ++.+ .+|+-+...| ++.+. . ...+ ...+.+.
T Consensus 276 ~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~-~~~~gg~~~~~~~~~~-~-----------~~~~--~~~~~~~ 339 (384)
T PRK12414 276 FAEALAEPASYLGLGAFYQRKRDLLARELAGS-RFEL-LPSEGSFFMLARFRHF-S-----------DESD--SDFVLRL 339 (384)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHHHHHhC-CCee-cCCCcceEEEEccccc-C-----------CCCH--HHHHHHH
Confidence 4444422 234445555566777788888886 6664 4566555555 43210 0 0001 1233455
Q ss_pred HHhcCcEEEEecee--CC--eeEEEEeccCCCCCHHHHHHHHHHHHH
Q psy13453 223 IIARKVIYIVKGSF--QD--RLFMRFAICSSQTEESDVQLGWNEIRT 265 (764)
Q Consensus 223 L~~~G~~~vs~t~l--~g--~~~LRi~v~np~Tt~e~i~~~l~~l~~ 265 (764)
|.+.|..+...... .+ ..++|++++. .++++++.++.|.+
T Consensus 340 l~~~gV~v~pg~~f~~~~~~~~~iRis~~~---~~~~~~~~~~rl~~ 383 (384)
T PRK12414 340 IRDARVATIPLSAFYTDGTDTGLIRLSFSK---DDATLVEGARRLCS 383 (384)
T ss_pred HHhCCEEEecchhhcCCCCCCCEEEEEecC---CHHHHHHHHHHHhh
Confidence 66788877655433 12 4689999985 37888888877754
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.13 Score=59.08 Aligned_cols=149 Identities=11% Similarity=0.043 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcch
Q psy13453 563 LEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNS 642 (764)
Q Consensus 563 lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~ 642 (764)
...+..+.|+++.+ |..+ ....|+.+|||||-.|++.||.....+....+. . ...++-+|.....-|=
T Consensus 93 ~~~~la~~l~~~~~-p~~~-------~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~--~--~~~r~kii~~~~~yHG 160 (443)
T PRK08297 93 EMARFVDTFARVLG-DPEL-------PHLFFVDGGALAVENALKVAFDWKSRKNEARGI--D--PALGTKVLHLRGAFHG 160 (443)
T ss_pred HHHHHHHHHHhhcC-CCCC-------CEEEEeCchHHHHHHHHHHHHHHhhccccccCC--C--CCCCceEEEECCCcCC
Confidence 33445556666653 2211 246899999999999999999763211000000 0 0001223444444553
Q ss_pred hHHHHHHhCCC-----------ceEEEecCC-C----C-------c---ccHHHHHHHHHHhhhcCCCceEEEEeeccCC
Q psy13453 643 SVEKSAIIGDV-----------PVRQLRSDD-N----G-------V---LRGDALLTAVKEDLAKGLIPCCLIATLGTTG 696 (764)
Q Consensus 643 Sv~kAa~~lGl-----------~v~~Vp~d~-~----g-------~---md~~~Le~~I~~~~~~G~~p~~VvataGTT~ 696 (764)
.-.-+..+.|. ....+|... . + . =+++++++.|.+ .+..+.+|++---...
T Consensus 161 ~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~iAavI~EPi~g~ 237 (443)
T PRK08297 161 RSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLRFPLPGEDLEEVEALEAEALAQARAAFER---HPHDIACFIAEPIQGE 237 (443)
T ss_pred cchhhhhhcCCcccccccCCCCCccccCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHh---CCCcEEEEEEccccCC
Confidence 33333333221 000121100 0 0 0 134555666653 2334666665544444
Q ss_pred cccc----ccHHHHHHHHHhcCCEEEEecccccc
Q psy13453 697 TCAF----DNLEELGPICQEYNIWLHVDAAYAGS 726 (764)
Q Consensus 697 ~Gai----Dpl~eIa~i~~~~glwLHVDaA~Gg~ 726 (764)
.|.+ +-+++|.++|++||+.|.+|-.+.|+
T Consensus 238 ~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGf 271 (443)
T PRK08297 238 GGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGV 271 (443)
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcc
Confidence 4555 78999999999999999999998774
|
|
| >KOG2467|consensus | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.014 Score=63.75 Aligned_cols=174 Identities=18% Similarity=0.157 Sum_probs=110.9
Q ss_pred CchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEE--eCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEE
Q psy13453 557 SPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGII--QSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVA 634 (764)
Q Consensus 557 sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~Gvf--TsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi 634 (764)
.--..++|.-|.+.-.++||++++ .||+- .-+||-||+..-.+-.. +..+.-| +
T Consensus 81 ne~ID~iE~LCq~RALeaF~ldp~--------kWGVNVQp~SGSPANfavYtall~---Ph~RiMG-------------L 136 (477)
T KOG2467|consen 81 NEYIDQIELLCQKRALEAFGLDPE--------KWGVNVQPYSGSPANFAVYTALLK---PHERIMG-------------L 136 (477)
T ss_pred chHHHHHHHHHHHHHHHHhCCCHH--------HCceeeccCCCCchhhHHHhhhcC---CCCeeee-------------c
Confidence 345678999999999999999886 35543 35788898765443221 1111001 1
Q ss_pred EecCCcchhHHHH---HHhCCCc--eEEE--ecC-CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHH
Q psy13453 635 YTSDQSNSSVEKS---AIIGDVP--VRQL--RSD-DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEEL 706 (764)
Q Consensus 635 ~~S~~aH~Sv~kA---a~~lGl~--v~~V--p~d-~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eI 706 (764)
-.++-.|-|---. -.+.... .... .+| +.|-||.|.||+.-..- +|-++| +|++.+.-.-|...+
T Consensus 137 DLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~TG~IDYD~Le~~A~~f-----rPk~ii--aG~SaY~R~~DYaR~ 209 (477)
T KOG2467|consen 137 DLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPSTGYIDYDKLEKTATLF-----RPKLII--AGTSAYSRLIDYARF 209 (477)
T ss_pred cCCCCCccccccccCCceeeeeeeecccCceeeCCCCCceehHHHHHHHHhc-----CCcEEE--eccccchhhccHHHH
Confidence 1122222221000 0000000 1111 245 67999999999875443 465554 677777777789999
Q ss_pred HHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 707 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 707 a~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
++||++.|.+|.+|-|+-.+++...... .-+|.||-+|..-||.|-.|.+.=+||
T Consensus 210 R~Iad~~gA~Lm~DMAHISgLVAA~vip---sPFey~DiVTTTTHKsLRGPRg~mIFy 264 (477)
T KOG2467|consen 210 RKIADKVGAYLMADMAHISGLVAAGVIP---SPFEYCDIVTTTTHKSLRGPRGAMIFY 264 (477)
T ss_pred HHHHHhcCceeehhhhhHHHHHhcccCC---CcccccceeeccccccccCCcceeEEE
Confidence 9999999999999999876554332111 236889999999999999998865554
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.23 Score=57.35 Aligned_cols=176 Identities=16% Similarity=0.024 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcE-EEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCC
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGG-IIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQ 639 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~G-vfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~ 639 (764)
+..+.++.+.|.+++..... ...- +|+++|||||-.|++.||... .+ +.+|.....
T Consensus 100 ~~~~~~lAe~L~~~~p~~~~-------~~~~~f~~~SGsEAve~AlklAr~~t-gr---------------~~Ii~~~~~ 156 (459)
T PRK06931 100 TPLKDAFSEYLLSLLPGQGK-------EYCLQFTGPSGADAVEAAIKLAKTYT-GR---------------SNVISFSGG 156 (459)
T ss_pred CHHHHHHHHHHHHhCCCccc-------cceEEEeCCCcHHHHHHHHHHHHHhc-CC---------------CeEEEECCC
Confidence 45666777888888742210 0123 445899999999999999752 11 123444444
Q ss_pred cchhHHHHHHhCC------------CceEEEecCCCCc--------ccHHHHHHHHHHhhh----cCCCceEEEEeeccC
Q psy13453 640 SNSSVEKSAIIGD------------VPVRQLRSDDNGV--------LRGDALLTAVKEDLA----KGLIPCCLIATLGTT 695 (764)
Q Consensus 640 aH~Sv~kAa~~lG------------l~v~~Vp~d~~g~--------md~~~Le~~I~~~~~----~G~~p~~VvataGTT 695 (764)
-|=...-+..+.| -.+..+|.....+ -+.+++++.+++..+ .+..+.+|++---..
T Consensus 157 yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg 236 (459)
T PRK06931 157 YHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQG 236 (459)
T ss_pred cCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccC
Confidence 4533333332221 1345555432111 134555444443322 122344554432222
Q ss_pred Ccccc----ccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCcee
Q psy13453 696 GTCAF----DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSA 762 (764)
Q Consensus 696 ~~Gai----Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~ 762 (764)
..|.+ +=++++.++|++||+.|++|-.+.|+-....-+....-|+ ..|-+++ -|.++.-+..|+
T Consensus 237 ~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv-~PDivt~--gK~l~gG~Pi~a 304 (459)
T PRK06931 237 EGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGI-EPDIIVM--SKAVGGGLPLAV 304 (459)
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCC-CCCEEEe--cccccCCcceee
Confidence 33444 2389999999999999999999877533222222222355 4777776 455543344444
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.084 Score=59.01 Aligned_cols=222 Identities=11% Similarity=0.041 Sum_probs=121.0
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCC-CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCC
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLP-DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGP 93 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd-~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~w 93 (764)
.+.+..+++...|... +.++++ +++.+|+++|+++|++... .++-+++. +..+|..-|++++++ +++
T Consensus 78 ~~~~~~~~~~~~G~~~---~~~~~~~~~~~~d~~~l~~~i~~~~~-~~t~~v~~---~~~~G~~~~~~~i~~l~~~~~~~ 150 (380)
T TIGR03588 78 TFVATANCALYCGAKV---DFVDIDPDTGNIDEDALEKKLAAAKG-KLPKAIVP---VDFAGKSVDMQAIAALAKKHGLK 150 (380)
T ss_pred chHHHHHHHHHcCCEE---EEEecCCCcCCcCHHHHHHHhhcccC-CCceEEEE---eCCCCccCCHHHHHHHHHHcCCE
Confidence 3566778889999887 999997 4788999999999984311 11223332 234687778888765 788
Q ss_pred ceeccccccc------------cc------------------eeeeecCCCccccc--ccc---cccc--------CCcc
Q psy13453 94 LKVGGVLRRV------------YS------------------SCLVPRGQKSLRTT--VLF---HFLF--------QHWQ 130 (764)
Q Consensus 94 lHVDa~l~~~------------y~------------------s~ll~rd~~~l~~~--~s~---~~d~--------~d~t 130 (764)
+-+|++.... ++ ++++..+++..... +.. ..+. ..+.
T Consensus 151 lI~D~a~a~g~~~~~~~~g~~~~~d~~~~S~~~~K~~~~~~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 230 (380)
T TIGR03588 151 IIEDASHALGAEYGGKPVGNCRYADATVFSFHPVKIITTAEGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWY 230 (380)
T ss_pred EEEECCCcccCccCCEeCCCccccceEEEecCCCCcccccCceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcce
Confidence 8888854210 11 12222221110000 000 0000 0000
Q ss_pred cCCC-----CcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCc-----eeEEEEeecccccc
Q psy13453 131 IPLG-----RRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSM-----GLVCFRLKVRFWDK 200 (764)
Q Consensus 131 le~S-----Rr~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l-----~iV~Fry~P~~~~~ 200 (764)
.+.. -+..-+..-..+. ..+.+.+++++..++++++.+.|..+|++++..++.- .+.++++.+.
T Consensus 231 ~~~~~~g~n~~m~~l~aa~g~~--qL~~l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---- 304 (380)
T TIGR03588 231 YEQQELGFNYRMTDIQAALGLS--QLKKLDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLDQE---- 304 (380)
T ss_pred eeeeccccccCccHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEEEEEEEECCc----
Confidence 0100 0122222111111 1455889999999999999999999988876655321 1122222110
Q ss_pred ccccccCccCCccHHHHHHHHHHHhcCcEEE-EeceeC-------------C-------eeEEEEeccCCCCCHHHHHHH
Q psy13453 201 LDNLFGTISFGDNDLNKAVYDRIIARKVIYI-VKGSFQ-------------D-------RLFMRFAICSSQTEESDVQLG 259 (764)
Q Consensus 201 ~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~v-s~t~l~-------------g-------~~~LRi~v~np~Tt~e~i~~~ 259 (764)
... -..++.+.|.++|...- ....++ . ...|++ -+++..++++++.+
T Consensus 305 ---------~~~--~r~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~l-P~~~~l~~~dv~~i 372 (380)
T TIGR03588 305 ---------FGC--TRKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISL-PLHPALTLEQQQRV 372 (380)
T ss_pred ---------CCC--CHHHHHHHHHHCCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEc-CCCCCCCHHHHHHH
Confidence 001 12477788888776321 000110 0 134555 37888899999999
Q ss_pred HHHHHHH
Q psy13453 260 WNEIRTA 266 (764)
Q Consensus 260 l~~l~~~ 266 (764)
++.|+++
T Consensus 373 ~~~l~~~ 379 (380)
T TIGR03588 373 VETLRKV 379 (380)
T ss_pred HHHHHHh
Confidence 9998764
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.11 Score=59.88 Aligned_cols=77 Identities=10% Similarity=0.029 Sum_probs=53.7
Q ss_pred eeeeHHHH-HhhcCCCCCCeEEecCCC--------CCc--ccHHHHHHHHHHHhhCCCCcEEEEeeCCcccc-c---ccC
Q psy13453 20 LIYESFKA-THSLSGTPDQVRLSGLPD--------SEW--LAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQ-D---IQS 84 (764)
Q Consensus 20 ~~YSv~KA-a~~LGl~~~~v~~Vpvd~--------~~r--mD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G-~---iDp 84 (764)
.||...++ ..+.|... +.||+++ .++ +|+++|+++|.+... .++.+++.+.++-++| . .++
T Consensus 124 p~~~~~~~~i~~~G~~~---v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~-~~tk~Ivl~~p~NptGG~v~s~~~ 199 (460)
T PRK13238 124 YHFDTTRAHIELNGATA---VDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGA-ENVPFIVMTITNNSAGGQPVSMAN 199 (460)
T ss_pred CcccchHHHHHHcCCEE---EEEeccccccccccccccCCcCHHHHHHHHhhcCC-CceeEEEEecCCCCCCCcCCCHHH
Confidence 46766655 66778877 8888863 344 999999999985311 1345667777777776 3 455
Q ss_pred chhhhc-----CCCceecccc
Q psy13453 85 LNAPVS-----NGPLKVGGVL 100 (764)
Q Consensus 85 i~~ia~-----~~wlHVDa~l 100 (764)
++++++ ++|++.|++.
T Consensus 200 l~~I~~ia~~~gi~li~Daa~ 220 (460)
T PRK13238 200 LRAVYEIAKKYGIPVVIDAAR 220 (460)
T ss_pred HHHHHHHHHHcCCEEEEECcc
Confidence 666655 8999999854
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0086 Score=64.65 Aligned_cols=74 Identities=9% Similarity=-0.134 Sum_probs=57.5
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCC--C----CcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc---
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPD--S----EWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS--- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~--~----~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~--- 90 (764)
.|+|+..++.+.|... +.++++. + +.+|++++++++++.. ..-+++-+.+ +++|.+.|++++++
T Consensus 108 ~h~s~~~~~~~~g~~~---~~v~~~~~~~~~~~~~i~~~~l~~~l~~~~---~~k~v~l~~p-~~~G~~~dl~~I~~~~~ 180 (294)
T cd00615 108 CHKSVINGLVLSGAVP---VYLKPERNPYYGIAGGIPPETFKKALIEHP---DAKAAVITNP-TYYGICYNLRKIVEEAH 180 (294)
T ss_pred chHHHHHHHHHCCCEE---EEecCccCcccCcCCCCCHHHHHHHHHhCC---CceEEEEECC-CCCCEecCHHHHHHHHH
Confidence 7899999999998776 7787753 2 4799999999997632 1223445557 56999999999887
Q ss_pred --CCCceecccc
Q psy13453 91 --NGPLKVGGVL 100 (764)
Q Consensus 91 --~~wlHVDa~l 100 (764)
+++++||+++
T Consensus 181 ~~g~~livDeA~ 192 (294)
T cd00615 181 HRGLPVLVDEAH 192 (294)
T ss_pred hcCCeEEEECcc
Confidence 8899999965
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 764 | ||||
| 3rbf_A | 480 | Crystal Structure Of Human Aromatic L-Amino Acid De | 1e-107 | ||
| 3rch_A | 480 | Crystal Structure Of Human Aromatic L-Amino Acid De | 1e-106 | ||
| 3k40_A | 475 | Crystal Structure Of Drosophila 3,4-Dihydroxyphenyl | 1e-106 | ||
| 1js3_A | 486 | Crystal Structure Of Dopa Decarboxylase In Complex | 1e-102 | ||
| 4e1o_A | 481 | Human Histidine Decarboxylase Complex With Histidin | 7e-97 | ||
| 3vp6_A | 511 | Structural Characterization Of Glutamic Acid Decarb | 2e-22 | ||
| 2okj_A | 504 | The X-Ray Crystal Structure Of The 67kda Isoform Of | 2e-22 | ||
| 2jis_A | 515 | Human Cysteine Sulfinic Acid Decarboxylase (Csad) I | 3e-22 | ||
| 2okk_A | 497 | The X-Ray Crystal Structure Of The 65kda Isoform Of | 2e-20 | ||
| 2qma_A | 497 | Crystal Structure Of Glutamate Decarboxylase Domain | 9e-14 | ||
| 3f9t_A | 397 | Crystal Structure Of L-tyrosine Decarboxylase Mfna | 2e-06 |
| >pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid Decarboxylase (Aadc) In The Apo Form Length = 480 | Back alignment and structure |
|
| >pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid Decarboxylase (Aadc) In The Open Conformation With Llp And Plp Bound To Chain-A And Chain- B Respectively Length = 480 | Back alignment and structure |
|
| >pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine Decarboxylase Length = 475 | Back alignment and structure |
|
| >pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With The Inhibitor Carbidopa Length = 486 | Back alignment and structure |
|
| >pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine Methyl Ester (Hme) Length = 481 | Back alignment and structure |
|
| >pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid Decarboxylase; Insights Into The Mechanism Of Autoinactivation Length = 511 | Back alignment and structure |
|
| >pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of Glutamic Acid Decarboxylase (Gad67) Length = 504 | Back alignment and structure |
|
| >pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In Complex With Plp. Length = 515 | Back alignment and structure |
|
| >pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of Glutamic Acid Decarboxylase (Gad65) Length = 497 | Back alignment and structure |
|
| >pdb|2QMA|A Chain A, Crystal Structure Of Glutamate Decarboxylase Domain Of Diaminobutyrate-Pyruvate Transaminase And L-2,4-Diaminobutyrate Decarboxylase From Vibrio Parahaemolyticus Length = 497 | Back alignment and structure |
|
| >pdb|3F9T|A Chain A, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec 4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At 2.11 A Resolution Length = 397 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 764 | |||
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 1e-154 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 8e-49 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 1e-153 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 4e-49 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 1e-152 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 6e-50 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 1e-138 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 8e-40 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 1e-134 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 7e-44 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 1e-132 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 4e-40 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 6e-30 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 3e-08 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 3e-29 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 1e-08 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 1e-28 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 2e-05 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 3e-27 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 5e-06 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 8e-19 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 3e-16 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-04 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 3e-07 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 7e-07 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 4e-06 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 4e-04 |
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* Length = 486 | Back alignment and structure |
|---|
Score = 457 bits (1177), Expect = e-154
Identities = 174/312 (55%), Positives = 229/312 (73%)
Query: 453 EEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTV 512
+FR GK +D++ADY++ I R V P V+PGYL L+P P+E + + I++D+ +
Sbjct: 4 SDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKI 63
Query: 513 IMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLG 572
IMPG+THW SP F AYFPT SSYP+++ DML GA G IGFSW +SPACTELE ++M+WLG
Sbjct: 64 IMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLG 123
Query: 573 KALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKL 632
K L LPE FL G GGG+IQ +ASEATLV++L A+ K++ Q+ +P LT+ + KL
Sbjct: 124 KMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKL 183
Query: 633 VAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATL 692
VAY SDQ++SSVE++ +IG V ++ + SD +R AL A++ D A GLIP ++ATL
Sbjct: 184 VAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATL 243
Query: 693 GTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHK 752
GTT C+FDNL E+GPIC E +IWLHVDAAYAGSA + PE+ HL G+E+ DSF+FN HK
Sbjct: 244 GTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHK 303
Query: 753 WLLVNFDCSAMW 764
WLLVNFDCSAMW
Sbjct: 304 WLLVNFDCSAMW 315
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* Length = 486 | Back alignment and structure |
|---|
Score = 178 bits (453), Expect = 8e-49
Identities = 63/150 (42%), Positives = 91/150 (60%), Gaps = 16/150 (10%)
Query: 126 FQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS 185
++HWQ+PLGRRFR+LK+W R YG+KGLQAY+RKH+ L+ +F V QD RFE+ +
Sbjct: 346 YRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVT 405
Query: 186 MGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFA 245
+GLVCFRLK G + LN+A+ +RI + + I++V + + +RFA
Sbjct: 406 LGLVCFRLK----------------GSDGLNEALLERINSARKIHLVPCRLRGQFVLRFA 449
Query: 246 ICSSQTEESDVQLGWNEIRTATEEVLRGKS 275
ICS + E V+L W IR E+L +
Sbjct: 450 ICSRKVESGHVRLAWEHIRGLAAELLAAEE 479
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} Length = 481 | Back alignment and structure |
|---|
Score = 453 bits (1168), Expect = e-153
Identities = 159/313 (50%), Positives = 220/313 (70%), Gaps = 1/313 (0%)
Query: 453 EEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTV 512
EE+RE G+ +D+I Y+ +RER V P V+PGYL + +P PE+ + W I D+ +
Sbjct: 9 EEYRERGREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDIERI 68
Query: 513 IMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLG 572
IMPG+ HWQSP +AY+P +S+PS++GDML+ A +GF+W SSPACTELE+ VM+WL
Sbjct: 69 IMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLA 128
Query: 573 KALGLPEEFLNCSP-GPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631
K LGLPE FL+ P GGG++QST SE+TL+++L A++ I ++ P E+ + +
Sbjct: 129 KMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNAR 188
Query: 632 LVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIAT 691
LVAY SDQ++SSVEK+ +I V ++ L DDN LRG+AL A++ED +GL+P + AT
Sbjct: 189 LVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCAT 248
Query: 692 LGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTH 751
LGTTG CAFD L ELGPIC +WLH+DAAYAG+A L PE+ +G+EY DSF FN
Sbjct: 249 LGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPS 308
Query: 752 KWLLVNFDCSAMW 764
KW++V+FDC+ W
Sbjct: 309 KWMMVHFDCTGFW 321
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} Length = 481 | Back alignment and structure |
|---|
Score = 179 bits (455), Expect = 4e-49
Identities = 56/146 (38%), Positives = 77/146 (52%), Gaps = 16/146 (10%)
Query: 126 FQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS 185
F HWQIPL RRFR++KLW +RS+G+K LQA++R +AK F LV D FE+
Sbjct: 350 FMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRH 409
Query: 186 MGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFA 245
+GLV FRLK G N L + V I ++++ + QD+L +RF
Sbjct: 410 LGLVVFRLK----------------GPNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFT 453
Query: 246 ICSSQTEESDVQLGWNEIRTATEEVL 271
+ S T D+ WN IR A +L
Sbjct: 454 VTSQFTTRDDILRDWNLIRDAATLIL 479
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} Length = 475 | Back alignment and structure |
|---|
Score = 452 bits (1164), Expect = e-152
Identities = 179/312 (57%), Positives = 240/312 (76%), Gaps = 1/312 (0%)
Query: 453 EEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTV 512
EF++F K +DFIA+Y++NIRER VLP V+PGYL L+P PE+ E W+ +M+D+ V
Sbjct: 4 PEFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIERV 63
Query: 513 IMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLG 572
IMPG+THW SP+F+AYFPT +SYP+IV DMLSGA IGF+W++SPACTELEV++M+WLG
Sbjct: 64 IMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLG 123
Query: 573 KALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKL 632
K L LP EFL CS G GGG+IQ TASE+TLV++L AK K + + +P E+ I KL
Sbjct: 124 KMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKL 183
Query: 633 VAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATL 692
V Y SDQ++SSVE++ ++G V +R ++ +N +RG AL A+++D+A+GLIP + TL
Sbjct: 184 VGYCSDQAHSSVERAGLLGGVKLRSVQ-SENHRMRGAALEKAIEQDVAEGLIPFYAVVTL 242
Query: 693 GTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHK 752
GTT +CAFD L+E GP+ ++N+W+HVDAAYAGSA + PEY HL +G+E DSF+FN HK
Sbjct: 243 GTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHK 302
Query: 753 WLLVNFDCSAMW 764
W+LVNFDCSAMW
Sbjct: 303 WMLVNFDCSAMW 314
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} Length = 475 | Back alignment and structure |
|---|
Score = 181 bits (461), Expect = 6e-50
Identities = 66/147 (44%), Positives = 90/147 (61%), Gaps = 16/147 (10%)
Query: 126 FQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS 185
++HWQIPLGRRFRALKLW LR YG++ LQA++R+H + AK+F DL D RFEL +
Sbjct: 343 YRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEIN 402
Query: 186 MGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFA 245
MGLVCFRLK G N+ N+A+ RI R I++V +D F+R A
Sbjct: 403 MGLVCFRLK----------------GSNERNEALLKRINGRGHIHLVPAKIKDVYFLRMA 446
Query: 246 ICSSQTEESDVQLGWNEIRTATEEVLR 272
ICS T+ D++ W E+ A +E+ +
Sbjct: 447 ICSRFTQSEDMEYSWKEVSAAADEMEQ 473
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* Length = 504 | Back alignment and structure |
|---|
Score = 417 bits (1073), Expect = e-138
Identities = 83/320 (25%), Positives = 145/320 (45%), Gaps = 21/320 (6%)
Query: 453 EEFREFGKAAIDFIADYVDNIRERP--VLPSVEPGYLASLVPG---EMPEEGEDWRHIMR 507
E+ +F +D + +YV +R VL P L + G E+ + E I+
Sbjct: 19 EQTVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILV 78
Query: 508 DMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLV 567
D + G+ P+F TG + G+ L+ F++ +P +E +
Sbjct: 79 DCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQIT 137
Query: 568 MNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTEND 627
+ + + +G + G GI + + + SI+ A+ K ++K
Sbjct: 138 LKKMREIVGWSSKD-------GDGIFSPGGAISNMYSIMAARYKYFPEVKTKG-----MA 185
Query: 628 IRNKLVAYTSDQSNSSVEKSAI---IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLI 684
KLV +TS+QS+ S++K+ G V ++ ++ G + + E KG +
Sbjct: 186 AVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYV 245
Query: 685 PCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVD 744
P + AT GTT AFD ++E+ IC++YN+WLHVDAA+ G L+ ++ H G+E +
Sbjct: 246 PFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERAN 305
Query: 745 SFDFNTHKWLLVNFDCSAMW 764
S +N HK + V CSA+
Sbjct: 306 SVTWNPHKMMGVLLQCSAIL 325
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* Length = 504 | Back alignment and structure |
|---|
Score = 152 bits (387), Expect = 8e-40
Identities = 25/149 (16%), Positives = 51/149 (34%), Gaps = 4/149 (2%)
Query: 126 FQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVC--P 183
I GR K W+ ++ G G + + K + LA+ ++ + FE+V
Sbjct: 356 TGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGE 415
Query: 184 PSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDR-LFM 242
P VCF + + + + + ++ + D+ F
Sbjct: 416 PEHTNVCFWYIPQSLRGVPDSPQRREKLH-KVAPKIKALMMESGTTMVGYQPQGDKANFF 474
Query: 243 RFAICSSQTEESDVQLGWNEIRTATEEVL 271
R I + +SD+ EI +++
Sbjct: 475 RMVISNPAATQSDIDFLIEEIERLGQDLH 503
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} Length = 497 | Back alignment and structure |
|---|
Score = 405 bits (1042), Expect = e-134
Identities = 68/321 (21%), Positives = 137/321 (42%), Gaps = 16/321 (4%)
Query: 449 PPPNEEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPG-EMPEEGEDWRHIMR 507
+ EF + + + ++P L + ++ + + ++
Sbjct: 28 ELGSAEFASVMSHTTSAMKSVFEQVN--APYSGMDPKALEDAINAVDLDNKNAPLKSVID 85
Query: 508 DMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLV 567
D+ ++ Q P A+ T P++ + + A SW + + T +E V
Sbjct: 86 DVAELVAKNAIFTQHPDCIAHLHTPPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKV 145
Query: 568 MNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPS-LTEN 626
+NWL L E+ GI S +++ + +++A+ + + + L
Sbjct: 146 VNWLCDKYDLSEK--------ADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLP 197
Query: 627 DIRNKLVAYTSDQSNSSVEKSAI---IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGL 683
D +KL S +S+ +V+KSA +G+ V + ++ +G + L + + A+GL
Sbjct: 198 DYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAEGL 257
Query: 684 IPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYV 743
IP ++ T GTT A D+L+ + + ++++W+HVD AY G AL+L + +G+E
Sbjct: 258 IPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGG-ALILSSHKSRLKGVERA 316
Query: 744 DSFDFNTHKWLLVNFDCSAMW 764
S + HK C A+
Sbjct: 317 HSISVDFHKLFYQTISCGALL 337
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} Length = 497 | Back alignment and structure |
|---|
Score = 164 bits (418), Expect = 7e-44
Identities = 34/146 (23%), Positives = 66/146 (45%), Gaps = 12/146 (8%)
Query: 126 FQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS 185
I +RF ALK++MT+++ G K L ++ + AD++ +D+FEL+ PS
Sbjct: 364 LVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPS 423
Query: 186 MGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFA 245
+ V FR + D ++LNKA+ + R + + + + ++F
Sbjct: 424 LSTVLFRAT---HETADL---------DELNKALRLEALTRGIAVLGETIVDGKTALKFT 471
Query: 246 ICSSQTEESDVQLGWNEIRTATEEVL 271
I + SD + ++I E++
Sbjct: 472 ILNPCLTTSDFESLLSKINMLAVELV 497
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} Length = 515 | Back alignment and structure |
|---|
Score = 401 bits (1032), Expect = e-132
Identities = 81/339 (23%), Positives = 144/339 (42%), Gaps = 21/339 (6%)
Query: 432 SDLIINSIPLTKASPVTPPPNEEFREFGKAAIDFIADYV---DNIRERPVLPSVEPGYLA 488
+L S+ ++A P +A + D + V EP L
Sbjct: 16 ENLYFQSMADSEALPSLAGDPVAVEALLRAVFGVVVDEAIQKGTSVSQKVCEWKEPEELK 75
Query: 489 SLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFG 548
L+ E+ +GE + I+ VI + P+F +G ++ G +++ +
Sbjct: 76 QLLDLELRSQGESQKQILERCRAVIRYSVKTG-HPRFFNQLFSGLDPHALAGRIITESLN 134
Query: 549 LIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVA 608
+++ +P +E V+ L +G G GI S + + ++ +A
Sbjct: 135 TSQYTYEIAPVFVLMEEEVLRKLRALVGWSS---------GDGIFCPGGSISNMYAVNLA 185
Query: 609 KRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAI---IGDVPVRQLRSDDNGV 665
+ + + + L +TS + + S++K A +G VR +++D+ G
Sbjct: 186 RYQRYPDCKQRGL-----RTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKADERGK 240
Query: 666 LRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAG 725
+ + L + A+G +P + AT GTT AFD LE + +CQ + +WLHVDAA+ G
Sbjct: 241 MVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGG 300
Query: 726 SALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764
S LL + HL G++ DS +N HK L CSA+
Sbjct: 301 SVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALL 339
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} Length = 515 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 4e-40
Identities = 30/148 (20%), Positives = 62/148 (41%), Gaps = 6/148 (4%)
Query: 126 FQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS 185
+ GRR LKLW+ ++ G +GL+ + + LA+ + +++ + FELV P
Sbjct: 371 TGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPE 430
Query: 186 MGLVCFRLKVRFWDKLDNLFGTISFGD--NDLNKAVYDRIIARKVIYIVKGSFQDRL-FM 242
VCF L + + + + + + +R++ + I R F
Sbjct: 431 FVNVCFWFV---PPSLRGKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFF 487
Query: 243 RFAICSSQTEESDVQLGWNEIRTATEEV 270
R + +S +D+ NE+ +++
Sbjct: 488 RVVVANSALTCADMDFLLNELERLGQDL 515
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} Length = 497 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 6e-30
Identities = 45/283 (15%), Positives = 99/283 (34%), Gaps = 39/283 (13%)
Query: 494 EMPEEGEDWRHIMRDMNTVI-MPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGF 552
++P G ++ ++N + + T W+ + + G + + + A+
Sbjct: 37 QLPSNGIPQDDVIEELNKLNDLIPHTQWKEGKVSGAVYHG---GDDLIHLQTIAYEKYCV 93
Query: 553 SWL----SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVA 608
+ PA ++E V++ + + P + G G S +E+ L++ L A
Sbjct: 94 ANQLHPDVFPAVRKMESEVVSMVLRMFNAPSD-------TGCGTTTSGGTESLLLACLSA 146
Query: 609 KRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSD-DNGVLR 667
K ++H P + +++ +K+A + +R + D +
Sbjct: 147 KMYALHHRGITEPEI-----------IAPVTAHAGFDKAAYYFGMKLRHVELDPTTYQVD 195
Query: 668 GDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAG-- 725
+ + ++ L+ + D++E LG I Q+Y + LHVD+
Sbjct: 196 LGKVKKFINKN------TVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFI 249
Query: 726 ----SALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764
L + V S +THK+ S +
Sbjct: 250 VSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIM 292
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} Length = 497 | Back alignment and structure |
|---|
Score = 56.1 bits (135), Expect = 3e-08
Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 135 RRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQD-DRFELVCPPSMGLVCFRL 193
+ W T+ + G G ++ + A KF ++++ +++ P ++ F
Sbjct: 324 PGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVISFSS 383
Query: 194 K 194
K
Sbjct: 384 K 384
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* Length = 514 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 3e-29
Identities = 45/315 (14%), Positives = 97/315 (30%), Gaps = 33/315 (10%)
Query: 455 FREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTVIM 514
+ A D D++ ++R + A L P G I+ ++ +
Sbjct: 36 IQSQPPARRDPTMDWLASLRSQIKPYRDRFPSHARL-----PRAGLPRAEILAEIAAMGA 90
Query: 515 PGITHWQSPQFNAY-FPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGK 573
W+ + + + + + ++ + P+ + E V+
Sbjct: 91 AESPAWRDGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAH 150
Query: 574 ALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633
LG + G G + S +E+ L+++ + P
Sbjct: 151 MLGGDA-----AGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEA---------- 195
Query: 634 AYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLG 693
++++ +K+A + + + D + A+ A+ + + +
Sbjct: 196 -VVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITPN------TVVVAGSAP 248
Query: 694 TTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLK-----RGLEYVDSFDF 748
D + E+ + E+ I HVDA G L E LE V S
Sbjct: 249 GYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSA 308
Query: 749 NTHKWLLVNFDCSAM 763
+THK+ S +
Sbjct: 309 DTHKYGYGAKGTSVI 323
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* Length = 514 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 1e-08
Identities = 9/68 (13%), Positives = 20/68 (29%), Gaps = 3/68 (4%)
Query: 135 RRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLK 194
+ W + S G +G R+ + A + V +++ P L +
Sbjct: 356 PGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDP---LWVIAVA 412
Query: 195 VRFWDKLD 202
+
Sbjct: 413 SDELNIYQ 420
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 Length = 456 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 1e-28
Identities = 47/282 (16%), Positives = 91/282 (32%), Gaps = 39/282 (13%)
Query: 493 GEMPEEGEDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLS------GA 546
++PE G D I + + M +Y I ++ S G
Sbjct: 56 RKIPENGIDDEKIKLFLKFLSMMDTDKDPKSVRIGERE-ARTYSKIHEELSSGFCHGIGR 114
Query: 547 FGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSIL 606
G + + + + L L I ++ ++ L
Sbjct: 115 SGNLVDPQPKASGASIMYALTNKILESFFKQL-------GLNVHAIATPISTGMSISLCL 167
Query: 607 VAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAI---IGDVPVRQLRSDDN 663
A RK + +V Y S+ S K+ + V + D
Sbjct: 168 SAARK---------------KYGSNVVIY-PYASHKSPIKAVSFVGMNMRLVETVLDGDR 211
Query: 664 GVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAY 723
+ + + A+K+++ G PC +++TL D++ E+ IC+ Y+I ++ AY
Sbjct: 212 VYVPVEDIENAIKKEIELGNRPC-VLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAY 270
Query: 724 AGSALLLPEYAHLKRGL--EYVDSFDFNTHKWLLVNFDCSAM 763
A+ Y + VD+ ++ K LL +
Sbjct: 271 ---AIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLV 309
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 Length = 456 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 2e-05
Identities = 8/60 (13%), Positives = 18/60 (30%), Gaps = 5/60 (8%)
Query: 117 RTTVLFHFLFQHWQIPLGRRF--RALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQ 174
+ + GR + ++L S G K ++ + K +L+
Sbjct: 312 TDAEFIKEISLSYP---GRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLND 368
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} Length = 397 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 3e-27
Identities = 54/271 (19%), Positives = 96/271 (35%), Gaps = 34/271 (12%)
Query: 495 MPEEGEDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSW 554
M E+G + I+ ++ ++ + I ++
Sbjct: 5 MQEKGVSEKEILEELKKYRSLD-LKYEDGNIFGSMCSN--VLPITRKIVDIFLETNLGDP 61
Query: 555 LSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMIN 614
LE + LG L + G I S +EA L+++ K N
Sbjct: 62 GLFKGTKLLEEKAVALLGSLLNNKD---------AYGHIVSGGTEANLMALRCIK----N 108
Query: 615 HWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTA 674
W+ K + K++ ++ S EK + D+ ++ + + A
Sbjct: 109 IWREKRRKGLSKNEHPKIIV--PITAHFSFEKGREMMDLEYIYAPIKEDYTIDEKFVKDA 166
Query: 675 VKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYA 734
V++ +I GTT DN+EEL I +E NI++HVDAA+ G + +
Sbjct: 167 VEDY-----DVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDK 221
Query: 735 HLKRGLEYVDSFDFN---------THKWLLV 756
+ K+G+ Y FDF+ HK
Sbjct: 222 YKKKGVNYK--FDFSLGVDSITIDPHKMGHC 250
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} Length = 397 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 5e-06
Identities = 9/59 (15%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 136 RFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLK 194
F + LR G +G + + + + +++++ F+ V P + +V +
Sbjct: 289 GFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKENN-FKPVIEPILNIVAIEDE 346
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} Length = 502 | Back alignment and structure |
|---|
Score = 89.3 bits (221), Expect = 8e-19
Identities = 54/278 (19%), Positives = 100/278 (35%), Gaps = 28/278 (10%)
Query: 494 EMPEEGEDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFS 553
+MPE + +N +M +P+ N + ++ +
Sbjct: 31 KMPENSIPKEAAYQIINDELMLDG----NPRLNLASFVTTWMEPECDKLIMSSINKNYVD 86
Query: 554 WLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMI 613
P TEL+ +N + P E G+ +SEA +++ L KRK
Sbjct: 87 MDEYPVTTELQNRCVNMIAHLFNAPLE----EAETAVGVGTVGSSEAIMLAGLAFKRKWQ 142
Query: 614 NHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNG-VLRGDALL 672
N +++ + + +I T EK A +V +++++ + V+ +
Sbjct: 143 NKRKAEGKPVDKPNI------VTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQQAV 196
Query: 673 TAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYN------IWLHVDAAYAGS 726
V E+ C+ A LG+T F++++ L + E N +HVDAA G
Sbjct: 197 DMVDEN------TICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGF 250
Query: 727 ALLLPEYAHLKR-GLEYVDSFDFNTHKWLLVNFDCSAM 763
L V S + + HK+ LV +
Sbjct: 251 IAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWV 288
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* Length = 452 | Back alignment and structure |
|---|
Score = 80.8 bits (199), Expect = 3e-16
Identities = 39/216 (18%), Positives = 71/216 (32%), Gaps = 33/216 (15%)
Query: 558 PACTELEVLVMNWLGKALGLPEEFLNCSPGPG--GGIIQSTASEATLVSILVAKRKMINH 615
P +++ +N + P + G G SE + ++ M
Sbjct: 77 PQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGS------SE----ACMLGGMAMKWR 126
Query: 616 WQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSD-DNGVLRGDALLTA 674
W+ + + + + LV K A DV +R++ + ++ A
Sbjct: 127 WRKRMEAAGKPTDKPNLVCGPV---QICWHKFARYWDVELREIPMRPGQLFMDPKRMIEA 183
Query: 675 VKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYN------IWLHVDAAYAGSAL 728
E+ ++ T G T T ++ + L ++ I +H+DAA G
Sbjct: 184 CDEN------TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGG--F 235
Query: 729 LLPEYAHLKR---GLEYVDSFDFNTHKWLLVNFDCS 761
L P A L V S + HK+ L C
Sbjct: 236 LAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCG 271
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.3 bits (153), Expect = 2e-10
Identities = 110/634 (17%), Positives = 178/634 (28%), Gaps = 226/634 (35%)
Query: 191 FRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQ 250
F D D +S K D II K V G+ RLF + + S Q
Sbjct: 29 FVDNFDCKDVQDMPKSILS-------KEEIDHIIMSK--DAVSGT--LRLF--WTLLSKQ 75
Query: 251 TEESDVQLGWNEIRTATEEVLRG--KSLGPAGKVMGGAQAIAGTESSGPADQVLGEIQPV 308
++ EEVLR K L I TE P+ I+
Sbjct: 76 E---------EMVQKFVEEVLRINYKFL---------MSPIK-TEQRQPSMMTRMYIEQR 116
Query: 309 ARAESLGPVDELMGDVQAIAGGKNSGP-VETVLNSDTPQEVRSEDTPLGGVL--GEESSG 365
D L D Q A K + ++ L ++ E P VL G
Sbjct: 117 ---------DRLYNDNQVFA--KYNVSRLQPYLKL---RQALLELRPAKNVLIDG---VL 159
Query: 366 GCGQQKLTPPVAKPLTVQGPVNPVDR----SMNKAPPPYSIAIPL--LDHNEVPGNKSFR 419
G G+ + V VQ + ++ P ++ L L + P S
Sbjct: 160 GSGKTWVALDVCLSYKVQ--CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 420 GHSENLITLIIASDLIINSIPLTKASPVTPPPNEEFREFGKAAIDFIADYVDNIRERPVL 479
HS N+ L I+SI E R ++ +P
Sbjct: 218 DHSSNIK-------LRIHSI------------QAELRRL--------------LKSKP-- 242
Query: 480 PSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTG------S 533
Y L+ ++ + V + +NA F +
Sbjct: 243 ------YENCLL-------------VLLN---V-------QNAKAWNA-FNLSCKILLTT 272
Query: 534 SYPSIVGDMLSGA----FGLIGFSWLSSPACTELEVLVMNWLG-KALGLPEEFLNCSPGP 588
+ + D LS A L S +P E++ L++ +L + LP E L +P
Sbjct: 273 RFKQVT-DFLSAATTTHISLDHHSMTLTPD--EVKSLLLKYLDCRPQDLPREVLTTNP-- 327
Query: 589 GGGIIQSTASEATLVSILVAK-RKMINHWQ-SKNPSLTENDIRNKLVAYTSDQSNSSVEK 646
+SI+ R + W K+ D+ + +E
Sbjct: 328 ------------RRLSIIAESIRDGLATWDNWKH--------------VNCDKLTTIIES 361
Query: 647 SAIIGDVPVRQLRSDDN-------GVLRGDALLTA-------------VKEDLAKGLIPC 686
S + L + V A + + L
Sbjct: 362 S-------LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 687 CLIATLGTTGTCAFDNL--EELGPICQEYNIWLH---VDA-----AYAGSALLLPE---- 732
L+ T + ++ E + EY LH VD + L+ P
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYA--LHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 733 ------YAHLKRGLEYVDSFD-FNTHKWLLVNFD 759
+ HLK +E+ + F + ++F
Sbjct: 473 FYSHIGH-HLK-NIEHPERMTLFRM---VFLDFR 501
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 7e-06
Identities = 56/408 (13%), Positives = 111/408 (27%), Gaps = 102/408 (25%)
Query: 406 LLDHNEVPGNKSFR-GHSENLITLIIAS---DLIINSIPLTKASPVTPPPNEEFREFGKA 461
+L E +F +++ I++ D II S
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS----------KDAVSGTLRL--- 67
Query: 462 AIDFIADYVDNIRERPVLPSVEPGY--LASLV------PGEMPEEGEDWRHIMRDMNTVI 513
+ + + ++ V + Y L S + P M + R + + N V
Sbjct: 68 -FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 514 MPGITHWQSPQFNAYFPTG----SSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMN 569
+ Q +++ + G G G +W++ C +V
Sbjct: 127 AKY--NVSRLQPYLKLRQALLELRPAKNVL---IDGVLG-SGKTWVALDVCLSYKVQCKM 180
Query: 570 -----WLGKALGL---PEEFLN-----C---SPGPGGGIIQSTASEATLVSILVAKRKMI 613
WL L PE L P S+ + + SI R+++
Sbjct: 181 DFKIFWLN--LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 614 NHWQSKNPSLTENDIRNK------------LVAYTSDQSNSSVEKSAIIGDVPVRQLRSD 661
+N L +++N L+ T + + +A + +
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT-TRFKQVTDFLSAATTTHISLDHHSM- 296
Query: 662 DNGVLRGDAL------LTAVKEDL---AKGLIP--CCLIATLGTTGTCAFDNLEELGPIC 710
+ + L +DL P +IA G +DN
Sbjct: 297 --TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN-------- 346
Query: 711 QEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNF 758
W HV+ + ++ L ++ ++ L F
Sbjct: 347 -----WKHVNCDKLTTI--------IESSLNVLEPAEYRKMFDRLSVF 381
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 8e-04
Identities = 91/668 (13%), Positives = 169/668 (25%), Gaps = 233/668 (34%)
Query: 59 ESFRKSFLCPMCSGYCGRTLHQDIQSLNAPV-SNGP----LKVGGVLRRVYS--SCLVPR 111
++F +F C +D+Q + + S + + L+ +
Sbjct: 27 DAFVDNFDC------------KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74
Query: 112 GQKSLRT---TVL---FHFLFQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLA 165
++ ++ VL + FL + + ++++ R Q + + ++S
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 166 KKFADL---VEQDDRFELVCPPSMG---------LVCFRLKVR-------FW-------- 198
+ + L + + + V + VC KV+ FW
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 199 -----DKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEE 253
+ L L I + + I + S Q L R + S E
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSN-------IKLRIHSIQAEL--RRLLKSKPYEN 245
Query: 254 S-----DVQLGWNEIRTATEEVLRGKSLGPAGKVMGGAQAIAGTESSGPADQVLG----E 304
+V N + +L + + T D +
Sbjct: 246 CLLVLLNV---QN------AKAWNAFNL--------SCKILLTTRFKQVTDFLSAATTTH 288
Query: 305 IQPVARAESLGPVDELMGDVQAIAGGKNSGPVETVLNSDTPQEVRSEDTPLG-GVLGEES 363
I + +L P DE+ + + D P+EV + + P ++ E
Sbjct: 289 ISLDHHSMTLTP-DEVKSLLLKYLDCR---------PQDLPREVLTTN-PRRLSIIAESI 337
Query: 364 SGGC---------GQQKLTPPVAKPLTVQGP----------------VN-P--------- 388
G KLT + L V P + P
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 389 --------------VDRSM-NKAPPPYSIAIPLLDHNEVPGNKSFRGHSENLITLIIASD 433
S+ K P +I+IP + + EN L
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY-------LELKVKLENEYAL---HR 447
Query: 434 LIINSIPLTKASPVTPPPNEEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLAS---- 489
I++ + K + D I Y+D Y S
Sbjct: 448 SIVDHYNIPKTF----DSD-----------DLIPPYLDQ-------------YFYSHIGH 479
Query: 490 -LVPGEMPEEGEDWRHIMRDM----NTVIMPGITHWQSP--------QFNAY----FPTG 532
L E PE +R + D + T W + Q Y
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS-TAWNASGSILNTLQQLKFYKPYICDND 538
Query: 533 SSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGI 592
Y +V +L I + + S L + +M I
Sbjct: 539 PKYERLVNAILDFLPK-IEENLICSKYTDLLRIALMA------------------EDEAI 579
Query: 593 IQSTASEA 600
+ +
Sbjct: 580 FEEAHKQV 587
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* Length = 450 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 3e-07
Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 5/122 (4%)
Query: 643 SVEKSAIIGD---VPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCA 699
S KS + V + + D A+ ++E + + CL +T
Sbjct: 156 SCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHI--LCLHSTTACFAPRV 213
Query: 700 FDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD 759
D LEEL IC Y+I V+ AY + + +D+F + K +V
Sbjct: 214 PDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVG 273
Query: 760 CS 761
+
Sbjct: 274 GA 275
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} Length = 501 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 7e-07
Identities = 27/122 (22%), Positives = 43/122 (35%), Gaps = 5/122 (4%)
Query: 643 SVEKSAIIGD---VPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCA 699
S KS I V + + D A+ V+E + C+ +T
Sbjct: 174 SCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCI--LCIHSTTSCFAPRV 231
Query: 700 FDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD 759
D LEEL IC Y+I V+ AY + + +D+F + K +V
Sbjct: 232 PDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVG 291
Query: 760 CS 761
+
Sbjct: 292 GA 293
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 Length = 467 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 4e-06
Identities = 37/246 (15%), Positives = 76/246 (30%), Gaps = 47/246 (19%)
Query: 531 TGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGG 590
T + M++G G S +L+ +P
Sbjct: 54 TNAMSDHQWAAMITGDEAYAG-----SRNYYDLKDKAKELFNYDYIIP------------ 96
Query: 591 GIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEK---- 646
Q +E L +L+ + Q + + I N + D + + VE
Sbjct: 97 -AHQGRGAENILFPVLLK------YKQKEGKAKNPVFISN----FHFDTTAAHVELNGCK 145
Query: 647 --SAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF--DN 702
+ + + D G L + + A ++ T + G N
Sbjct: 146 AINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSN 205
Query: 703 LEELGPICQEYNIWLHVDAAYAGSALLL-----PEYAH------LKRGLEYVDSFDFNTH 751
L+E+ I +++ I++ +D+A P+Y + + +Y D+ +
Sbjct: 206 LKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAK 265
Query: 752 KWLLVN 757
K L+N
Sbjct: 266 KDPLLN 271
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* Length = 467 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 4e-04
Identities = 35/218 (16%), Positives = 67/218 (30%), Gaps = 36/218 (16%)
Query: 557 SPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHW 616
S + L V N G +P Q +E + +L+ KR+
Sbjct: 73 SRSYYALAESVKNIFGYQYTIP-------------THQGRGAEQIYIPVLIKKREQEKGL 119
Query: 617 QSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPV-RQLRSDDNGVLRGDALLTAV 675
N + + + + +R D G + L +
Sbjct: 120 DRSKMVAFSNYFFDTTQGH---SQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGI 176
Query: 676 KEDLAKGLIPCCLIATLGTTGTCA-----FDNLEELGPICQEYNIWLHVDAA-YAGSALL 729
+E G I T+ + NL+ + I ++Y+I + +D+A +A +A
Sbjct: 177 EEV---GPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYF 233
Query: 730 L----PEYAH------LKRGLEYVDSFDFNTHKWLLVN 757
+ EY + +Y D + K +V
Sbjct: 234 IKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVP 271
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 764 | |||
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 100.0 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 100.0 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 100.0 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 100.0 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 100.0 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 100.0 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 100.0 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 100.0 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 100.0 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 100.0 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.97 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.97 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.97 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.97 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.96 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.96 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.96 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.95 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.95 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.94 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.91 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.9 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.88 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.87 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.87 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.86 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.82 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.73 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.72 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.72 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.72 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.71 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.71 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.7 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.7 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.7 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.69 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.69 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.68 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.68 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.68 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.67 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.67 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.67 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.65 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.65 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.65 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.65 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.65 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.64 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.64 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.64 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.63 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.63 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.62 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.61 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.61 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.58 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.58 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.56 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.53 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.53 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.53 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.51 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.5 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.5 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.49 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.48 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.48 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.48 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.48 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.47 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.46 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.46 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.46 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.46 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.46 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.46 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.46 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.45 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.45 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.44 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.44 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.44 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.44 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.43 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.43 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.43 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.43 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.42 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.42 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.42 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.42 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.42 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.42 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.41 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.4 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.4 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.4 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.39 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.39 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.39 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.39 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.38 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.38 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.38 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.37 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 99.37 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.36 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.36 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.36 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.36 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.35 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.35 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.35 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 99.35 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.34 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.34 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.34 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.34 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.34 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.34 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.34 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.34 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.33 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.33 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.33 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.33 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.31 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.31 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.31 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.3 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.3 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.29 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.29 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.29 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.29 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.29 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.29 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.28 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.28 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.28 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.28 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.27 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.27 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.27 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.27 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.27 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 99.27 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.26 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.26 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 99.26 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.26 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.26 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.26 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.26 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.25 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.25 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.25 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.25 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.25 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.25 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.24 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.24 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.23 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.23 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.23 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.23 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.22 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.22 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.2 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.2 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.18 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.18 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.17 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.17 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.17 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.17 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.16 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.16 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.16 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.16 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.15 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.15 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.15 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.14 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.14 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.14 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.13 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.13 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.12 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.1 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.1 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.1 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.1 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.09 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.08 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.08 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.08 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.08 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.08 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.07 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.07 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.07 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.06 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.05 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.05 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.05 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.04 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.03 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.0 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.0 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 98.99 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 98.98 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 98.98 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 98.97 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 98.97 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 98.97 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 98.94 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 98.93 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 98.46 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 98.91 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 98.91 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 98.91 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 98.91 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 98.9 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 98.9 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 98.9 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 98.89 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 98.89 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 98.88 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 98.88 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 98.87 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 98.87 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 98.86 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 98.86 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 98.85 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 98.84 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 98.84 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 98.83 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 98.83 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 98.82 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 98.82 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 98.81 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 98.81 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 98.8 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 98.8 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 98.79 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 98.79 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 98.79 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 98.78 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 98.77 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 98.76 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 98.76 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 98.75 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 98.7 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 98.7 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 98.69 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 98.66 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 98.65 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 98.65 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 98.65 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 98.62 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 98.62 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 98.61 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 98.6 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 98.58 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 98.58 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 98.57 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 98.57 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 98.57 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 98.55 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 98.51 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 98.5 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 98.49 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 98.48 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 98.47 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 98.44 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 98.44 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 98.43 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 98.42 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 98.4 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 98.4 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 98.36 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 98.36 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 98.36 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 98.34 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 98.33 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 98.29 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 98.28 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 98.28 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 98.28 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 98.28 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 98.28 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 98.28 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 98.28 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 98.27 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 98.24 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 98.22 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 98.21 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 98.19 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 98.19 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 98.18 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 98.18 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 98.18 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 98.13 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 98.13 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 98.12 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 98.12 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 98.1 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 98.1 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 98.1 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 98.1 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 98.09 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 98.09 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 98.08 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 98.08 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 98.08 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 98.06 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 98.05 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 98.03 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 98.03 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 98.02 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 98.01 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 98.01 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 98.01 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 98.0 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 98.0 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 97.99 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 97.97 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 97.21 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 97.95 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 97.94 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 97.94 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 97.93 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 97.93 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 97.92 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 97.91 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 97.91 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 97.88 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 97.86 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 97.86 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 97.85 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 97.85 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 97.85 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 97.83 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 97.81 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 97.79 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 97.79 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 97.77 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 97.73 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 97.71 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 97.71 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 97.67 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 97.67 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 97.66 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 97.65 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 97.63 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 97.62 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 97.61 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 97.59 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 97.57 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 97.57 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 97.54 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 97.51 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 97.51 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 97.49 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 97.49 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 97.49 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 97.48 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 97.47 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 97.41 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 97.39 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 97.39 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 97.38 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 97.37 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 97.36 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 97.36 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 97.34 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 97.34 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 97.29 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 97.26 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 97.23 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 97.2 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 97.19 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 97.16 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 97.14 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 97.07 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 97.07 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 97.06 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 97.04 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 97.04 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 97.01 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 97.0 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 96.96 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 96.96 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 96.92 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 96.85 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 96.84 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 95.87 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 96.81 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 96.79 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 96.78 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 96.77 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 96.71 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 96.67 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 96.64 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 96.58 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 96.56 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 96.52 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 96.4 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 96.33 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 96.3 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 96.24 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 96.17 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 96.12 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 96.11 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 96.03 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 96.01 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 96.0 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 96.0 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 95.97 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 95.93 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 95.77 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 95.74 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 95.68 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 95.58 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 95.56 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 95.55 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 95.31 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 95.23 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 95.18 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 95.0 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 94.92 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 94.87 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 94.73 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 94.64 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 94.58 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 94.46 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 94.42 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 94.35 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 94.33 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 94.3 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 93.89 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 93.81 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 93.4 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 93.2 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 93.1 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 92.66 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 92.56 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 91.75 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 91.22 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 91.11 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 90.92 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 89.8 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 89.45 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 88.73 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 88.32 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 88.14 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 87.74 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 84.43 |
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-56 Score=504.69 Aligned_cols=319 Identities=50% Similarity=0.969 Sum_probs=295.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCcc
Q psy13453 446 PVTPPPNEEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPQF 525 (764)
Q Consensus 446 ~~~~~~~~~~~~~~~~~v~~i~~y~~~~~~~~v~~~~~p~~l~~~l~~~lP~~g~~~~~il~~l~~~i~~~~~~~~~P~~ 525 (764)
++.+||.++||+++++++|.+++|+++++++||.+.++|+++++.++..+|++|.+++++++++.+.+.++.++|+||+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 81 (481)
T 4e1o_A 2 PLGSMEPEEYRERGREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDIERIIMPGVVHWQSPHM 81 (481)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHHSGGGSCSSCCCCTTTTGGGSCSSCCSSCCCHHHHHHHHHHHTGGGCCCTTSTTB
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCe
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccC-CCCCCCcEEEeCChHHHHHHH
Q psy13453 526 NAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLN-CSPGPGGGIIQSTASEATLVS 604 (764)
Q Consensus 526 ~~~~~~~~~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~-~~~~~~~GvfTsGgTeANl~A 604 (764)
|+|++++.++++++++++.+++|+|...|..+|.++++|+++++|+++++|+|.++.. ...+.++|+||+|||+||++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~a 161 (481)
T 4e1o_A 82 HAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIA 161 (481)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHCCCCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHH
T ss_pred eEeCCCCCCHHHHHHHHHHHHhCcccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999986532 122346899999999999999
Q ss_pred HHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCC
Q psy13453 605 ILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLI 684 (764)
Q Consensus 605 l~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~ 684 (764)
+++||++..++.+..++++.+.+..++.+||+|+.+|+|+.|++++.|.+++.||+|++|+||+++|+++|+++.++|..
T Consensus 162 l~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~ 241 (481)
T 4e1o_A 162 LLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLV 241 (481)
T ss_dssp HHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCC
Confidence 99999988776544445454445567889999999999999999999999999999999999999999999999889999
Q ss_pred ceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 685 PCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 685 p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
|++|++|+|||.+|++|||++|+++|++||+|+|||||||+++++++++++.+.|+++|||+++|+|||+++|++||++|
T Consensus 242 ~~~vv~~~~~t~~G~id~l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~ 321 (481)
T 4e1o_A 242 PVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFW 321 (481)
T ss_dssp EEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEE
T ss_pred cEEEEEecCCCCCcCcCCHHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999975
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-56 Score=503.66 Aligned_cols=314 Identities=57% Similarity=1.065 Sum_probs=292.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCcccccc
Q psy13453 450 PPNEEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPQFNAYF 529 (764)
Q Consensus 450 ~~~~~~~~~~~~~v~~i~~y~~~~~~~~v~~~~~p~~l~~~l~~~lP~~g~~~~~il~~l~~~i~~~~~~~~~P~~~~~~ 529 (764)
||+++||+++++++|.+++|+++++++||.+.++|++|++.++.++|++|++++++++++.+.+.++.++|+||+||+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~p~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 80 (475)
T 3k40_A 1 MEAPEFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIERVIMPGVTHWHSPKFHAYF 80 (475)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTGGGSCSSCSSCTTCSGGGSCSSCCSSCCCHHHHHHHHHHHTGGGCCCTTCTTBCCSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhccCCCCCCcCceeeC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHH
Q psy13453 530 PTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAK 609 (764)
Q Consensus 530 ~~~~~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR 609 (764)
+++.++++++++++.+.+|+|...|..+|.+++||+++++|+++++|+|.+|.....+.++|+||+|||+||++|+++||
T Consensus 81 ~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar 160 (475)
T 3k40_A 81 PTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAK 160 (475)
T ss_dssp CCCCCHHHHHHHHHHHHHCCCSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHhCccccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998764433445689999999999999999999
Q ss_pred HHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEE
Q psy13453 610 RKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLI 689 (764)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~Vv 689 (764)
+++.++.+..++++.+.+..++.+||+|+.+|+|+.|+++++|++++.||+|++| ||+++|+++|+++.++|..|++|+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~g~~~~~v~~d~~~-~d~~~L~~~i~~~~~~~~~~~~v~ 239 (475)
T 3k40_A 161 AKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSENHR-MRGAALEKAIEQDVAEGLIPFYAV 239 (475)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHHTCEEEEECCBTTB-CCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHhhccCcccccccccCCeEEEECCCchHHHHHHHHHcCCceEEEECCCCC-cCHHHHHHHHHHHHHCCCccEEEE
Confidence 9877654433444444445567899999999999999999999999999999999 999999999999988899999999
Q ss_pred EeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 690 ATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 690 ataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
+|+|||.+|.+|||++|+++|++||+|+|||||||++++++++++..+.|++++||+++|+|||+++|++||++|
T Consensus 240 ~~~~~t~~G~~~~l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~ 314 (475)
T 3k40_A 240 VTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMW 314 (475)
T ss_dssp EEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEE
T ss_pred EEecCCCCcCcCCHHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999875
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-50 Score=457.94 Aligned_cols=319 Identities=27% Similarity=0.428 Sum_probs=289.4
Q ss_pred CcchhhhhhhhhhhcccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC--CCCCCCChhhHhhc---CCCCCC
Q psy13453 422 SENLITLIIASDLIINSIPLTKASPVTPPPNEEFREFGKAAIDFIADYVDNIRER--PVLPSVEPGYLASL---VPGEMP 496 (764)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~y~~~~~~~--~v~~~~~p~~l~~~---l~~~lP 496 (764)
.+++|+++++.+++ |.. .+.+++++++++++|.+++|++++.++ +|.++..|+++++. ++.++|
T Consensus 2 ~~~~~~~~~~~~~~----~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~p 70 (511)
T 3vp6_A 2 TETDFSNLFARDLL----PAK-------NGEEQTVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELS 70 (511)
T ss_dssp --CCCTTCCGGGST----TST-------TCHHHHHHHHHHHHHHHHHHHHHHTCTTSCSCCCCCHHHHHHCBTTBCCCCC
T ss_pred cccchhhhcccccC----CCC-------CChHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCHHHHHHHHhhCCCCCC
Confidence 45889999999998 532 468899999999999999999998665 57888999999999 899999
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCCCCCCccccccCCCCChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcC
Q psy13453 497 EEGEDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALG 576 (764)
Q Consensus 497 ~~g~~~~~il~~l~~~i~~~~~~~~~P~~~~~~~~~~~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG 576 (764)
++|++.+++++++.+.+.++. +|+||+||+|++++.++++++++++.+.+|++...|..+|.++++|+++++|+++++|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~-~~~~p~f~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~p~~~~le~~~~~~l~~~~g 149 (511)
T 3vp6_A 71 DHPESLEQILVDCRDTLKYGV-RTGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVG 149 (511)
T ss_dssp SSCCCHHHHHHHHHHHHHTSC-CTTSTTEESSSSCCCCHHHHHHHHHHHHHCCCSSCTTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhhccC-CCCCCCceEeecCCCcHHHHHHHHHHHHhccCCCCcccCchHHHHHHHHHHHHHHHhC
Confidence 999999999999999888775 4899999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCC---
Q psy13453 577 LPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDV--- 653 (764)
Q Consensus 577 ~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl--- 653 (764)
++.+ ..+|+||+|||+||++|+.++|+++.+..+.+| + ...++.+||+|+.+|+|+.++++++|+
T Consensus 150 ~~~~-------~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G--~---~~~~~~~v~~s~~~H~s~~~~~~~~g~g~~ 217 (511)
T 3vp6_A 150 WSSK-------DGDGIFSPGGAISNMYSIMAARYKYFPEVKTKG--M---AAVPKLVLFTSEQSHYSIKKAGAALGFGTD 217 (511)
T ss_dssp CCSS-------SCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHC--G---GGSCCEEEEEETTSCTHHHHHHHHTTSCGG
T ss_pred CCCC-------CCceEECCchHHHHHHHHHHHHHHhhhhhhhcC--c---ccCCCeEEEECCCchHHHHHHHHHcCCCCC
Confidence 9852 257999999999999999999997654322221 1 112467899999999999999999998
Q ss_pred ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchh
Q psy13453 654 PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEY 733 (764)
Q Consensus 654 ~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~ 733 (764)
+++.||+|++|+||+++|+++|+++.++|..|++|++++|+|.+|.+|||++|+++|++||+|+|||+|||+++++++++
T Consensus 218 ~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~ 297 (511)
T 3vp6_A 218 NVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKH 297 (511)
T ss_dssp GEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTT
T ss_pred cEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEEEccchhhHhhChhh
Confidence 89999999999999999999999998999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 734 AHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 734 r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
+..+.|+++|||+++|+|||+++|++||+++
T Consensus 298 ~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~ 328 (511)
T 3vp6_A 298 RHKLNGIERANSVTWNPHKMMGVLLQCSAIL 328 (511)
T ss_dssp GGGGTTGGGCSEEEECTTSTTCCCSCCEEEE
T ss_pred hhhccCCccCCEEEECcccccCCCcCeEEEE
Confidence 9999999999999999999999999999875
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-50 Score=458.08 Aligned_cols=315 Identities=55% Similarity=1.022 Sum_probs=283.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCcccccc
Q psy13453 450 PPNEEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPQFNAYF 529 (764)
Q Consensus 450 ~~~~~~~~~~~~~v~~i~~y~~~~~~~~v~~~~~p~~l~~~l~~~lP~~g~~~~~il~~l~~~i~~~~~~~~~P~~~~~~ 529 (764)
||.++||+++++++|.+++|++++.++||.+..+|+++++.++.++|++|++.+++++++.+.+.++.++|+||+|++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 80 (486)
T 1js3_A 1 MNASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKIIMPGVTHWHSPYFFAYF 80 (486)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTGGGSCSSCCCCTTCSGGGSCSSCCSSCCCHHHHHHHHHHTTGGGCCCTTSTTBCSSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHhccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCceEeC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHH
Q psy13453 530 PTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAK 609 (764)
Q Consensus 530 ~~~~~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR 609 (764)
++++++++.+++++..++|++...|..+|..+++|+++++|+++++|++.+|.....+.++|+||+|||+||++|+.++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~ 160 (486)
T 1js3_A 81 PTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAAR 160 (486)
T ss_dssp CCCCCHHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987543212223579999999999999999999
Q ss_pred HHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEE
Q psy13453 610 RKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLI 689 (764)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~Vv 689 (764)
++..++.+..+.++.+.+..++.+||+|+.+|+|+.++++++|++++.||+|++|+||+++|+++|++++++|..|++|+
T Consensus 161 ~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~vv 240 (486)
T 1js3_A 161 TKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVV 240 (486)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHhhhhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhCCCceEEeecCCCCCCCHHHHHHHHHHHHhCCCCceEEE
Confidence 86544221110011111112356799999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 690 ATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 690 ataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
+|+|||.+|++|||++|+++|++||+|+|||+|||++.+.++++++.+.|++.+||+++|+|||+++|++||+++
T Consensus 241 ~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~l~ 315 (486)
T 1js3_A 241 ATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMW 315 (486)
T ss_dssp EEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEE
T ss_pred EeCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcceEEEE
Confidence 999999999999999999999999999999999999999999899888899999999999999999999999874
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-48 Score=441.21 Aligned_cols=316 Identities=27% Similarity=0.425 Sum_probs=284.3
Q ss_pred hhhhhhhhhhhcccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC--CCCCCCChhhHhhc---CCCCCCCCC
Q psy13453 425 LITLIIASDLIINSIPLTKASPVTPPPNEEFREFGKAAIDFIADYVDNIRER--PVLPSVEPGYLASL---VPGEMPEEG 499 (764)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~y~~~~~~~--~v~~~~~p~~l~~~---l~~~lP~~g 499 (764)
+|++++++|+| |. . |+.++|++++++++|.+++|++++.++ +|.+.+.|+++++. ++.++|++|
T Consensus 2 ~~~~~~~~~~~----~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~p~~~ 70 (504)
T 2okj_A 2 DFSNLFARDLL----PA------K-NGEEQTVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHP 70 (504)
T ss_dssp TTTTCCGGGST----TS------T-TCHHHHHHHHHHHHHHHHHHHHHHTCTTSCSCCCCCHHHHHSCBTTBCCCCCSSC
T ss_pred cchhhhhcccc----CC------C-CCHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHhhccCCCCCCCC
Confidence 67889999998 64 2 899999999999999999999997765 49999999999999 999999999
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCccccccCCCCChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCc
Q psy13453 500 EDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPE 579 (764)
Q Consensus 500 ~~~~~il~~l~~~i~~~~~~~~~P~~~~~~~~~~~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~ 579 (764)
++.+++++++++.+.++.. +.||+||+|++++..+.+++++++.+++|+|...|..+|..+++|+++++|+++++|++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~ 149 (504)
T 2okj_A 71 ESLEQILVDCRDTLKYGVR-TGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSS 149 (504)
T ss_dssp CCHHHHHHHHHHHHHTSCC-TTCTTEESSSSCCCCHHHHHHHHHHHHHCCBSSCTTTCHHHHHHHHHHHHHHHHHHTCCS
T ss_pred CCHHHHHHHHHHHhhccCC-CCCCCEEEEccCCCCHHHHHHHHHHHhhccCCCchhhChHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999998777665 569999999999999999999999999999999999999999999999999999999983
Q ss_pred cccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCC---ceE
Q psy13453 580 EFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDV---PVR 656 (764)
Q Consensus 580 ~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl---~v~ 656 (764)
+ ..+|+||+|||+||++|+.++|++..+..+..| . ...++.+|++|+.+|+|+.|+++++|+ +++
T Consensus 150 ~-------~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G--~---~~~~~~~v~~s~~~h~s~~~~~~~~g~g~~~v~ 217 (504)
T 2okj_A 150 K-------DGDGIFSPGGAISNMYSIMAARYKYFPEVKTKG--M---AAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVI 217 (504)
T ss_dssp S-------SCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHC--G---GGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEE
T ss_pred C-------CCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcC--c---cccCCeEEEECCcchHHHHHHHHHcCCCcccEE
Confidence 1 157999999999999999999986543221111 0 001255899999999999999999887 899
Q ss_pred EEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhh
Q psy13453 657 QLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHL 736 (764)
Q Consensus 657 ~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~ 736 (764)
.||+|++|+||+++|+++|+++.++|..|++|++++|||.+|++||+++|+++|++||+|+|||+||+++.+.+++++..
T Consensus 218 ~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~~~ 297 (504)
T 2okj_A 218 LIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHK 297 (504)
T ss_dssp EECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGG
T ss_pred EEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhHHHhCHhhHhh
Confidence 99999999999999999999988888889999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 737 KRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 737 l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
+.|++.+||+++|+|||+++|++||+++
T Consensus 298 ~~g~~~~D~i~~~~hK~~~~p~~~g~l~ 325 (504)
T 2okj_A 298 LNGIERANSVTWNPHKMMGVLLQCSAIL 325 (504)
T ss_dssp GTTGGGCSEEEECTTSTTCCCSCCEEEE
T ss_pred cCCcccCCEEEECchhhcCCCcceEEEE
Confidence 9999999999999999999999999985
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-47 Score=436.78 Aligned_cols=319 Identities=25% Similarity=0.383 Sum_probs=275.9
Q ss_pred CCcchhhhhhhhhhhcccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHHhcCC--CCCCCCCChhhHhhcCCCCCCC
Q psy13453 421 HSENLITLIIASDLIINSIPLTKASPVTPPPNEEFREFGKAAIDFIAD-YVDNIRE--RPVLPSVEPGYLASLVPGEMPE 497 (764)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~-y~~~~~~--~~v~~~~~p~~l~~~l~~~lP~ 497 (764)
+.+.+|++++++|++ |. .+||.++|++++++++|.+++ |+++..+ +||.+...|++++..++..+|+
T Consensus 15 ~~~~~~~~~~~~~~~----~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~p~~l~~~~~~~~p~ 84 (515)
T 2jis_A 15 TENLYFQSMADSEAL----PS------LAGDPVAVEALLRAVFGVVVDEAIQKGTSVSQKVCEWKEPEELKQLLDLELRS 84 (515)
T ss_dssp --------------C----CC------CSCCHHHHHHHHHHHHHHHHHHTTTGGGCTTSCSCCCCCHHHHHHHHCCCCCS
T ss_pred cccccchhhhhcccc----CC------CCCCHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCHHHHHhhcccCCCC
Confidence 566889999999998 54 458999999999999999999 9988765 4899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCCCCCccccccCCCCChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCC
Q psy13453 498 EGEDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGL 577 (764)
Q Consensus 498 ~g~~~~~il~~l~~~i~~~~~~~~~P~~~~~~~~~~~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~ 577 (764)
+|++.+++++++++.+.++.. +.||+|++|++++..+.+++++++..++|++...|..+|.++++|.++++|+++++|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~s~~~~~le~~~~~~la~l~g~ 163 (515)
T 2jis_A 85 QGESQKQILERCRAVIRYSVK-TGHPRFFNQLFSGLDPHALAGRIITESLNTSQYTYEIAPVFVLMEEEVLRKLRALVGW 163 (515)
T ss_dssp SCCCHHHHHHHHHHHHHHSCC-TTSTTEESSSCCCCCHHHHHHHHHHHHHCCCTTCTTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHhcCCCC-CCCCCeEEEeeCCCCHHHHHHHHHHHHhccCCCchhhchHHHHHHHHHHHHHHHHhCC
Confidence 999999999999998777665 5699999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCC---c
Q psy13453 578 PEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDV---P 654 (764)
Q Consensus 578 p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl---~ 654 (764)
+. .+++||+|||+||++|+.++|++..+..+..| . ...++++|++|+.+|+|+.++++++|+ +
T Consensus 164 ~~---------~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G--~---~~~~~~~vl~s~~~h~s~~~~~~~~g~g~~~ 229 (515)
T 2jis_A 164 SS---------GDGIFCPGGSISNMYAVNLARYQRYPDCKQRG--L---RTLPPLALFTSKECHYSIQKGAAFLGLGTDS 229 (515)
T ss_dssp SS---------CEEEEESSHHHHHHHHHHHHHHHHCTTHHHHC--G---GGSCCEEEEEETTSCTHHHHHHHHTTSCGGG
T ss_pred CC---------CCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcC--c---cccCCeEEEECCCccHHHHHHHHHcCCCCCc
Confidence 74 47999999999999999999986543211110 0 012356899999999999999999988 8
Q ss_pred eEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhh
Q psy13453 655 VRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYA 734 (764)
Q Consensus 655 v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r 734 (764)
++.||+|++|+||+++|+++|+++.++|..|.+|++++|||.+|.+||+++|+++|++||+|+|||+||+++.+.+++++
T Consensus 230 v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~ 309 (515)
T 2jis_A 230 VRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHR 309 (515)
T ss_dssp EEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTG
T ss_pred EEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHHhChhhH
Confidence 99999999999999999999999888888899999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 735 HLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 735 ~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
+.+.|++.+||+++|+|||+++|++||+++
T Consensus 310 ~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~ 339 (515)
T 2jis_A 310 HLLDGIQRADSVAWNPHKLLAAGLQCSALL 339 (515)
T ss_dssp GGGTTGGGCSEEEECTTSTTCCCSCCEEEE
T ss_pred hhcCCCccCCEEEECcccccCCCCCeeEEE
Confidence 889999999999999999999999999875
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-44 Score=412.00 Aligned_cols=304 Identities=21% Similarity=0.369 Sum_probs=270.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHhhcCCC-CCCCCCCCHHHHHHHHHHHHcCCCCCCCCCccc
Q psy13453 448 TPPPNEEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPG-EMPEEGEDWRHIMRDMNTVIMPGITHWQSPQFN 526 (764)
Q Consensus 448 ~~~~~~~~~~~~~~~v~~i~~y~~~~~~~~v~~~~~p~~l~~~l~~-~lP~~g~~~~~il~~l~~~i~~~~~~~~~P~~~ 526 (764)
..++.++||+.+++++|.+++|+++. . ++.+...|+++++.++. .+|++|++++++++++.+.+.++.++|+||+||
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 104 (497)
T 2qma_A 27 GELGSAEFASVMSHTTSAMKSVFEQV-N-APYSGMDPKALEDAINAVDLDNKNAPLKSVIDDVAELVAKNAIFTQHPDCI 104 (497)
T ss_dssp STTTTHHHHHHHHHHHHHHHHHHHHC-C-SSSCCCCHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHTTTTSCCTTSTTBC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhc-c-CCCCCCCHHHHHHhccccCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCee
Confidence 35788999999999999999999987 3 44778899999999886 589999999999999999999999999999999
Q ss_pred cccCCCCChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHH
Q psy13453 527 AYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSIL 606 (764)
Q Consensus 527 ~~~~~~~~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~ 606 (764)
+|+.++..+++++++++...+|++...|..+|.++++|+++++|+++++|+++. ..++||+|||+||++++.
T Consensus 105 ~~~~~~~~~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~--------~~~~~t~ggt~a~~~al~ 176 (497)
T 2qma_A 105 AHLHTPPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLSEK--------ADGIFTSGGTQSNQMGLM 176 (497)
T ss_dssp SSSCCCCBHHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTT--------CEEEEESSHHHHHHHHHH
T ss_pred EeCCCCCcHHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCCCC--------CCeEEcCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999752 479999999999999999
Q ss_pred HHHHHHhhhhccCCCCCccccc---cCceEEEecCCcchhHHHHHHhCCC---ceEEEecCCCCcccHHHHHHHHHHhhh
Q psy13453 607 VAKRKMINHWQSKNPSLTENDI---RNKLVAYTSDQSNSSVEKSAIIGDV---PVRQLRSDDNGVLRGDALLTAVKEDLA 680 (764)
Q Consensus 607 aAR~~~~~~~~~~~~~~~~~~~---~~~~vi~~S~~aH~Sv~kAa~~lGl---~v~~Vp~d~~g~md~~~Le~~I~~~~~ 680 (764)
+||+++..+... ++....+. .++.+|++|+.+|+|+.+++.++|+ +++.||+|++++||+++|+++|+++.+
T Consensus 177 ~ar~~~~~~~~~--~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~ 254 (497)
T 2qma_A 177 LARDWIADKLSG--HSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAKA 254 (497)
T ss_dssp HHHHHHHHHHHC--CCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSSBCGGGHHHHHHHHHH
T ss_pred HHHHHHHHhhcc--cchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEecCCCCcCCHHHHHHHHHHHHH
Confidence 998865421100 00000011 1255899999999999999999987 799999999999999999999998888
Q ss_pred cCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCc
Q psy13453 681 KGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDC 760 (764)
Q Consensus 681 ~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~ 760 (764)
+|.+|++|++|.|+|.+|.+|||++|+++|++||+|+|||+||+++...++ +++.+.|++++||+++|+|||+++|++|
T Consensus 255 ~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~gi~~~D~i~~s~hK~l~~p~~~ 333 (497)
T 2qma_A 255 EGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILSS-HKSRLKGVERAHSISVDFHKLFYQTISC 333 (497)
T ss_dssp TTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGST-TGGGGTTGGGCSEEEEETTTTTCCCSSC
T ss_pred CCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCc-chHhhcCcccCCEEEEcchhccCCCcce
Confidence 888899999999999999999999999999999999999999999988887 7888889999999999999999999999
Q ss_pred eeeC
Q psy13453 761 SAMW 764 (764)
Q Consensus 761 g~l~ 764 (764)
|+++
T Consensus 334 G~l~ 337 (497)
T 2qma_A 334 GALL 337 (497)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9875
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-33 Score=314.10 Aligned_cols=258 Identities=16% Similarity=0.163 Sum_probs=208.3
Q ss_pred hhhHhhcCCCCCCCCCCCHHHHHHHHHHHH-cCCCCCCCCCccccccCCCCChHHHHHHHHHHhhcccCccccCCchHHH
Q psy13453 484 PGYLASLVPGEMPEEGEDWRHIMRDMNTVI-MPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTE 562 (764)
Q Consensus 484 p~~l~~~l~~~lP~~g~~~~~il~~l~~~i-~~~~~~~~~P~~~~~~~~~~~~~~~lad~l~~~lN~n~~~~~~sp~~t~ 562 (764)
...+++.++.++|++|++.+++++++.+.+ .++..+++||+|++.. .. ..+.+++..++|.+...|..+|.+.+
T Consensus 7 ~~~~~~~~~~~lp~~g~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~---~~--~~v~e~~~~a~~~~~~~~~~~~~~~~ 81 (452)
T 2dgk_A 7 KSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTW---DD--ENVHKLMDLSINKNWIDKEEYPQSAA 81 (452)
T ss_dssp --------CCSCCCSCCCHHHHHHHHHHHGGGSCCCTTBCSCCSCCC---CC--HHHHHHHHHTTTCBTTCTTTCHHHHH
T ss_pred hHHhhhccCCCCCCCCCCHHHHHHHHHHHhcCCCCCccCCCCeeCCC---ch--HHHHHHHHHHhccCCCChhhChhHHH
Confidence 344566677899999999999999999988 6888889999998721 11 45789999999999889999999999
Q ss_pred HHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcch
Q psy13453 563 LEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNS 642 (764)
Q Consensus 563 lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~ 642 (764)
+|+++++|+++++|++.+.. +...++||+|||+||++++.++++++.++.+..| .. ..+..|++|+ +|+
T Consensus 82 l~~~~~~~la~l~g~~~~~~----~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G--~~----~~~~~vi~~~-~h~ 150 (452)
T 2dgk_A 82 IDLRCVNMVADLWHAPAPKN----GQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAG--KP----TDKPNLVCGP-VQI 150 (452)
T ss_dssp HHHHHHHHHHHHTTCCCCTT----SCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTT--CC----CSCCEEEESS-CCH
T ss_pred HHHHHHHHHHHHhCCCcccc----cCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcC--CC----CCCcEEEECC-CcH
Confidence 99999999999999986410 0135899999999999999999876543222111 00 0123677888 999
Q ss_pred hHHHHHHhCCCceEEEecCC-CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhc------CC
Q psy13453 643 SVEKSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEY------NI 715 (764)
Q Consensus 643 Sv~kAa~~lGl~v~~Vp~d~-~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~------gl 715 (764)
++.++++++|++++.||+++ +++||+++|+++|+++ |.+|+++.|+|.+|.+||+++|+++|++| |+
T Consensus 151 ~~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~------t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~ 224 (452)
T 2dgk_A 151 CWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDEN------TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDI 224 (452)
T ss_dssp HHHHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCCTT------EEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHcCceEEEEecCCCCCeECHHHHHHHHhhC------CEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCC
Confidence 99999999999999999986 7999999999999653 67999999999999999999999999996 99
Q ss_pred EEEEecccccccc--ccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 716 WLHVDAAYAGSAL--LLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 716 wLHVDaA~Gg~~l--~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
|+|||+||++++. +.++.+..++ ++.+||+++|+|||+++|++||+++
T Consensus 225 ~l~vD~a~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~hK~~~~~~~~G~~~ 274 (452)
T 2dgk_A 225 DMHIDAASGGFLAPFVAPDIVWDFR-LPRVKSISASGHKFGLAPLGCGWVI 274 (452)
T ss_dssp CEEEECTTGGGTHHHHCTTCCCSTT-STTEEEEEEETTTTTCCCSSCEEEE
T ss_pred cEEEEcccHHHHHHhhCccchhhcC-CCCCcEEEECcccccCCCCCeEEEE
Confidence 9999999999865 3444333333 6678999999999999999999874
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=311.93 Aligned_cols=244 Identities=33% Similarity=0.470 Sum_probs=206.8
Q ss_pred cccc-ccccCCcceeeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccC
Q psy13453 7 IPKL-AYPSETLSLLIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQS 84 (764)
Q Consensus 7 ~~~~-~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDp 84 (764)
.|++ +|+|+. .|||+.|+++++|+.. +.||+|+++ ||+++|+++|++++++|..|++ |+|+|||++|++||
T Consensus 180 ~~~~~vi~s~~---~H~s~~~~~~~~g~~~---~~v~~d~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~ 252 (475)
T 3k40_A 180 LGKLVGYCSDQ---AHSSVERAGLLGGVKL---RSVQSENHR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY 252 (475)
T ss_dssp HHHEEEEEETT---SCHHHHHHHHHHTCEE---EEECCBTTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC
T ss_pred cCCeEEEECCC---chHHHHHHHHHcCCce---EEEECCCCC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC
Confidence 4666 889998 8999999999999865 999999999 9999999999999888888887 69999999999999
Q ss_pred chhhhc-----CCCceecccc-------------------------------cccc-ceeeeecCCCcccccccc-----
Q psy13453 85 LNAPVS-----NGPLKVGGVL-------------------------------RRVY-SSCLVPRGQKSLRTTVLF----- 122 (764)
Q Consensus 85 i~~ia~-----~~wlHVDa~l-------------------------------~~~y-~s~ll~rd~~~l~~~~s~----- 122 (764)
|++|++ ++|+||||+. ..++ |++++++++..+..++..
T Consensus 253 l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl 332 (475)
T 3k40_A 253 LDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYL 332 (475)
T ss_dssp HHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC-----------
T ss_pred HHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCcccc
Confidence 999887 9999999942 1122 357888887665433221
Q ss_pred -------ccccCCcccCCCCcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeec
Q psy13453 123 -------HFLFQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKV 195 (764)
Q Consensus 123 -------~~d~~d~tle~SRr~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P 195 (764)
.+++.+|++++||+++++++|++|+++|.+||++++++..++|+++++.|+++|+|+++.+|.+++|||++.+
T Consensus 333 ~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~~~~iv~f~~~~ 412 (475)
T 3k40_A 333 KHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKG 412 (475)
T ss_dssp ----------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCCBTTEEEEEESS
T ss_pred CCCcCCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEeCC
Confidence 1467889999999999999999999999999999999999999999999999999999999999999999852
Q ss_pred cccccccccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHcc
Q psy13453 196 RFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLRG 273 (764)
Q Consensus 196 ~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~~ 273 (764)
.+..+.++.++|+++|+++++.+.++|..++|+|++|++|+++||+.+++.|+++++++.++
T Consensus 413 ----------------~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~~~~ 474 (475)
T 3k40_A 413 ----------------SNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADEMEQE 474 (475)
T ss_dssp ----------------CHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred ----------------chHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 24467899999999999999999999999999999999999999999999999999888653
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=311.18 Aligned_cols=244 Identities=30% Similarity=0.422 Sum_probs=214.4
Q ss_pred cccc-ccccCCcceeeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccC
Q psy13453 7 IPKL-AYPSETLSLLIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQS 84 (764)
Q Consensus 7 ~~~~-~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDp 84 (764)
.|++ +|+|+. .|||+.|++++.|... +.||+|++++||+++|+++|++++++|..|++ |+++|||++|++||
T Consensus 186 ~~~~~v~~s~~---~H~s~~~~~~~~g~~~---~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~ 259 (481)
T 4e1o_A 186 NARLVAYASDQ---AHSSVEKAGLISLVKM---KFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDC 259 (481)
T ss_dssp HTTEEEEEETT---SCHHHHHHHHHHTCEE---EEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC
T ss_pred cCCeEEEEcCc---chHHHHHHHHhCCCce---EEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCC
Confidence 4666 899999 8999999999998765 99999999999999999999999998988887 79999999999999
Q ss_pred chhhhc-----CCCceecccc-------------------------------cccc-ceeeeecCCCcccccccc-----
Q psy13453 85 LNAPVS-----NGPLKVGGVL-------------------------------RRVY-SSCLVPRGQKSLRTTVLF----- 122 (764)
Q Consensus 85 i~~ia~-----~~wlHVDa~l-------------------------------~~~y-~s~ll~rd~~~l~~~~s~----- 122 (764)
|++|++ ++|+||||+. ..++ |++++++++..+..++..
T Consensus 260 l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl 339 (481)
T 4e1o_A 260 LSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYL 339 (481)
T ss_dssp HHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGG
T ss_pred HHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhc
Confidence 999987 9999999842 1122 356777876554332221
Q ss_pred -------ccccCCcccCCCCcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeec
Q psy13453 123 -------HFLFQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKV 195 (764)
Q Consensus 123 -------~~d~~d~tle~SRr~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P 195 (764)
.+++.+|++++||+++++++|++|+.+|.+||++++++.+++|+++++.|+++|+|+++.+|.+++|||++.+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~ 419 (481)
T 4e1o_A 340 RHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKG 419 (481)
T ss_dssp CCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCCCSSEEEEEESS
T ss_pred cCcccCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEeCC
Confidence 1467789999999999999999999999999999999999999999999999999999999999999999852
Q ss_pred cccccccccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHc
Q psy13453 196 RFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLR 272 (764)
Q Consensus 196 ~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~ 272 (764)
.+..+.++.++|.++|+++++.+.+++..++|+++++++|+++||+.+++.|+++++++.+
T Consensus 420 ----------------~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~l~~ 480 (481)
T 4e1o_A 420 ----------------PNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDAATLILS 480 (481)
T ss_dssp ----------------CHHHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred ----------------chHHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 3456789999999999999899999999999999999999999999999999999988764
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-31 Score=307.49 Aligned_cols=259 Identities=17% Similarity=0.224 Sum_probs=216.1
Q ss_pred ccc-ccccCCcceeeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccCc
Q psy13453 8 PKL-AYPSETLSLLIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQSL 85 (764)
Q Consensus 8 ~~~-~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDpi 85 (764)
|+. +|+|+. .|||+.|+++++|++..+++.||+|++++||+++|+++|+++.++|..|.+ |+++|+|++|.+|||
T Consensus 191 ~~~~v~~s~~---~H~s~~~~~~~~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l 267 (511)
T 3vp6_A 191 PKLVLFTSEQ---SHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPI 267 (511)
T ss_dssp CCEEEEEETT---SCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCH
T ss_pred CCeEEEECCC---chHHHHHHHHHcCCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccH
Confidence 565 899999 899999999999998888999999999999999999999999999988888 699999999999999
Q ss_pred hhhhc-----CCCceecccc--------------------------ccc-----c-ceeeeecCCCccccccc-------
Q psy13453 86 NAPVS-----NGPLKVGGVL--------------------------RRV-----Y-SSCLVPRGQKSLRTTVL------- 121 (764)
Q Consensus 86 ~~ia~-----~~wlHVDa~l--------------------------~~~-----y-~s~ll~rd~~~l~~~~s------- 121 (764)
++|++ ++|+|||++. .++ + |++++++++..+...+.
T Consensus 268 ~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~ 347 (511)
T 3vp6_A 268 QEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLF 347 (511)
T ss_dssp HHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTC
T ss_pred HHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCcccc
Confidence 99887 9999999832 112 2 36788888765443221
Q ss_pred -------cccccCCcccCCCCcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeC--CCCceeEEEE
Q psy13453 122 -------FHFLFQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVC--PPSMGLVCFR 192 (764)
Q Consensus 122 -------~~~d~~d~tle~SRr~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~--~P~l~iV~Fr 192 (764)
..+++.+|++++||+++++++|++|+.+|.+|+.+++++.+++|+++++.|+++|+|+++. +|.+++||||
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f~ 427 (511)
T 3vp6_A 348 QQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFW 427 (511)
T ss_dssp CSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEEE
T ss_pred CcccccccccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEE
Confidence 1245678999999999999999999999999999999999999999999999999999999 7999999999
Q ss_pred eeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCe-eEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 193 LKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDR-LFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 193 y~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~-~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
|.|.+.+..... .......+..+.++.++|.++|.++++.+...+. .+||++++||.++.+||+.+++.|+++++++
T Consensus 428 ~~p~~~~~~~~~-~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~~ 505 (511)
T 3vp6_A 428 YIPQSLRGVPDS-PQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 505 (511)
T ss_dssp ECCGGGSSCCCC-HHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred EeCccccccccc-hhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 998765321100 0000123445678999999999988887666654 5899999999999999999999999999775
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-31 Score=301.22 Aligned_cols=265 Identities=24% Similarity=0.265 Sum_probs=218.6
Q ss_pred CCCCCChhhHhhcCCC-CCCCCCCCHHHHHHHHHHHHcCCCCCCCCCccc-cccCCCCChHHHHHHHHHHhhcccCcccc
Q psy13453 478 VLPSVEPGYLASLVPG-EMPEEGEDWRHIMRDMNTVIMPGITHWQSPQFN-AYFPTGSSYPSIVGDMLSGAFGLIGFSWL 555 (764)
Q Consensus 478 v~~~~~p~~l~~~l~~-~lP~~g~~~~~il~~l~~~i~~~~~~~~~P~~~-~~~~~~~~~~~~lad~l~~~lN~n~~~~~ 555 (764)
..|...+.++++.+|. .+|++|.+.+++++++.+.+.. ..||+++ +.+.+ ..+...+.+++...+|.+...|.
T Consensus 14 ~~~~~~~~~~~~~lp~~~~p~~~~~~~~~~~~~~~~i~l----~gnp~~~l~s~~t-~~~~~~v~~~l~~~~~~~~~~~~ 88 (502)
T 3hbx_A 14 VHSTFASRYVRTSLPRFKMPENSIPKEAAYQIINDELML----DGNPRLNLASFVT-TWMEPECDKLIMSSINKNYVDMD 88 (502)
T ss_dssp CSCTTTSSGGGSCCCSSSCCSSCCCHHHHHHHHHHHGGG----SCCGGGBTTCCSC-CCCCHHHHHHHHHTTTCBTTCTT
T ss_pred ccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHhcc----CCCCCceeccccC-CCCCHHHHHHHHHHhccCCCChh
Confidence 4455678899999987 9999999999999999998753 4678853 33322 22334578889999999999999
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
.+|.++++|+++++|+++++|++.+. .....|++|+|||+||++++.+++.++.++.+..|.+ ..+..|+
T Consensus 89 ~~p~~~~le~~~~~~la~l~g~~~~~----~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~------~~~~~vi 158 (502)
T 3hbx_A 89 EYPVTTELQNRCVNMIAHLFNAPLEE----AETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKP------VDKPNIV 158 (502)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCCS----SCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCC------CSCCEEE
T ss_pred cChhHHHHHHHHHHHHHHHhCCCccc----ccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCC------CCCcEEE
Confidence 99999999999999999999998310 1235788999999999999999988766544332211 1244789
Q ss_pred ecCCcchhHHHHHHhCCCceEEEecCCC-CcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhc-
Q psy13453 636 TSDQSNSSVEKSAIIGDVPVRQLRSDDN-GVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEY- 713 (764)
Q Consensus 636 ~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~-g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~- 713 (764)
+|+.+|+|+.++++++|+.++.||++++ ++||+++|+++|.++ |.+|+++.|+|.+|.++|+++|+++|+++
T Consensus 159 ~~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~------t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~ 232 (502)
T 3hbx_A 159 TGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQQAVDMVDEN------TICVAAILGSTLNGEFEDVKLLNDLLVEKN 232 (502)
T ss_dssp EETTCCHHHHHHHHHTTCEEEEECCBTTBCSCCHHHHHHHCCTT------EEEEEEEBSCTTTCCBCCHHHHHHHHHHHH
T ss_pred EcCCchHHHHHHHHHcCceeEEEecCCCcCcCCHHHHHHHHhhC------CEEEEEecCCCCCCcccCHHHHHHHHHHhh
Confidence 9999999999999999999999999865 999999999998764 67999999999999999999999999999
Q ss_pred -----CCEEEEecccccccc--ccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 714 -----NIWLHVDAAYAGSAL--LLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 714 -----glwLHVDaA~Gg~~l--~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
|+|+|||+||++++. +++.++..+. ++++||+++++|||+++|.+||+++
T Consensus 233 ~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~-~~~~D~v~~s~hK~l~~p~g~G~~~ 289 (502)
T 3hbx_A 233 KETGWDTPIHVDAASGGFIAPFLYPELEWDFR-LPLVKSINVSGHKYGLVYAGIGWVI 289 (502)
T ss_dssp HHHCCCCCEEEECTTGGGTHHHHCTTCCCSTT-STTEEEEEEETTTTTCCCSSCEEEE
T ss_pred hccCCCCeEEEECCccchhhhhhCcccccccC-CCCceEEEECcccccCCCCCeEEEE
Confidence 999999999998764 4566655554 6788999999999999999999764
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.9e-31 Score=293.40 Aligned_cols=235 Identities=17% Similarity=0.139 Sum_probs=188.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHcCCCCCCC-----------------CCccccccCCCCChHHHHHHHHHHhhcccCcccc
Q psy13453 493 GEMPEEGEDWRHIMRDMNTVIMPGITHWQ-----------------SPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWL 555 (764)
Q Consensus 493 ~~lP~~g~~~~~il~~l~~~i~~~~~~~~-----------------~P~~~~~~~~~~~~~~~lad~l~~~lN~n~~~~~ 555 (764)
..+|++|.+-++|...+.+.-..+.++|. .||||+|+++. +..+|++.+ |. .|.
T Consensus 21 ~~~p~~g~~~~~i~~~l~~~~~~d~~~~~~~~~~geregrv~~~~~~~r~~g~~hg~----~~~~d~l~~----~~-~~~ 91 (450)
T 3bc8_A 21 GKCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGI----GRSGDISAV----QP-KAA 91 (450)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHTBGGGCTTCCCCSSCCCCCSCHHHHHHTTTCCSCB----CC-----------CC-SBH
T ss_pred ccCCccCCCHHHHHHHHHHHhhCCCCccccccccCcccceEecccccCCccceecch----hHHHHHHHh----Cc-ccc
Confidence 35899999999999999987666666663 27999999886 556688777 34 788
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChH-HHHHHHHHHHHHHHhhhhccCCCCCccccccCceEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTAS-EATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVA 634 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgT-eANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi 634 (764)
.+|.+..+|+.++.|+.+++|+|+. .++++++|+| +++.+++.+||....+ .+ .|
T Consensus 92 ~~~~~~~~e~~~~~~~~~~lGlp~~--------~~~~lV~GaT~~~~a~~L~aar~~~~~---------------~~-~v 147 (450)
T 3bc8_A 92 GSSLLNKITNSLVLNVIKLAGVHSV--------ASCFVVPMATGMSLTLCFLTLRHKRPK---------------AK-YI 147 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTC--------CEEEEESSCHHHHHHHHHHHHHHHCTT---------------CC-EE
T ss_pred CCcHHHHHHHHHHHHHHHhCCCCCC--------ceEEEECCHHHHHHHHHHHHcchhhcC---------------CC-EE
Confidence 9999999999999999999999985 4679999998 8888888888875211 12 35
Q ss_pred EecCCcchhHHHHHHhCCCceEEEec---CCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHH
Q psy13453 635 YTSDQSNSSVEKSAIIGDVPVRQLRS---DDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQ 711 (764)
Q Consensus 635 ~~S~~aH~Sv~kAa~~lGl~v~~Vp~---d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~ 711 (764)
+++..+|.|+.||+.++|+..+.|++ ++.+.||+++|+++|+++..+ .+++|+.|.+++.+|++|||++|+++|+
T Consensus 148 iv~r~aHkSv~kAl~l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~~~--~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~ 225 (450)
T 3bc8_A 148 IWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPE--HILCLHSTTACFAPRVPDRLEELAVICA 225 (450)
T ss_dssp EEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGG--GEEEEEEESSCCTTBCCCCHHHHHHHHH
T ss_pred EEECCcHHHHHHHHHHcCCeeEEEEeeecCccCCcCHHHHHHHHHhcCCC--CEEEEEEECCcCCCceecCHHHHHHHHH
Confidence 55677999999999999997666654 678999999999999987522 4789999998888899999999999999
Q ss_pred hcCCEEEEeccccccccccchhhhhhcCC--CcccEEEEcCCccCCCCcCceeeC
Q psy13453 712 EYNIWLHVDAAYAGSALLLPEYAHLKRGL--EYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 712 ~~glwLHVDaA~Gg~~l~~~~~r~~l~gi--e~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
+||+|+|||+|||+.+.+.++.- ..++ ++||+++.|+|||+++|++||+++
T Consensus 226 ~~gi~l~VD~A~G~~~~~~~~l~--~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~ 278 (450)
T 3bc8_A 226 NYDIPHVVNNAYGLQSSKCMHLI--QQGARVGRIDAFVQSLDKNFMVPVGGAIIA 278 (450)
T ss_dssp HHTCCEEEECTTTTTCHHHHHHH--HHHHHHSCCCEEEEEHHHHHSCCSSCEEEE
T ss_pred HCCCeEEEECCCchhhhhhHhHH--HHHhcccCCCEEEECCccCCCchhccEEEE
Confidence 99999999999999766543221 1334 678999999999999999999874
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=288.57 Aligned_cols=245 Identities=32% Similarity=0.508 Sum_probs=211.6
Q ss_pred ccc-ccccCCcceeeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccCc
Q psy13453 8 PKL-AYPSETLSLLIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQSL 85 (764)
Q Consensus 8 ~~~-~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDpi 85 (764)
|++ +|+|+. .|||+.|+++++|++. +.||+|++++||+++|+++|++++++|..|++ |+++|||++|++|||
T Consensus 181 ~~~~v~~s~~---~h~s~~~~~~~~G~~v---~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l 254 (486)
T 1js3_A 181 EKLVAYASDQ---AHSSVERAGLIGGVKL---KAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNL 254 (486)
T ss_dssp HHEEEEEETT---CCHHHHHHHHHHTCEE---EEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCH
T ss_pred CCEEEEECCC---CcHHHHHHHHhCCCce---EEeecCCCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCH
Confidence 354 788888 8999999999999986 99999999999999999999999999988877 799999999999999
Q ss_pred hhhhc-----CCCceecccc-------------------------------cccc-ceeeeecCCCccccccc-------
Q psy13453 86 NAPVS-----NGPLKVGGVL-------------------------------RRVY-SSCLVPRGQKSLRTTVL------- 121 (764)
Q Consensus 86 ~~ia~-----~~wlHVDa~l-------------------------------~~~y-~s~ll~rd~~~l~~~~s------- 121 (764)
++|++ ++|+|||++. ..++ +++++++++..+...+.
T Consensus 255 ~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~l~~~~~~~l~~~~~~~~~yl~ 334 (486)
T 1js3_A 255 LEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLK 334 (486)
T ss_dssp HHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC-------
T ss_pred HHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcceEEEEEeCHHHHHHHhcCCchhhC
Confidence 99987 9999999942 0112 36788877643322221
Q ss_pred -------cccccCCcccCCCCcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEee
Q psy13453 122 -------FHFLFQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLK 194 (764)
Q Consensus 122 -------~~~d~~d~tle~SRr~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~ 194 (764)
..+++.+|++++||+++++++|++|+.+|.+||++++++..++++++++.|+++|+|+++.+|+++++|||+.
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~ 414 (486)
T 1js3_A 335 HSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLK 414 (486)
T ss_dssp -----CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEEEES
T ss_pred CCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCceeEEEEEec
Confidence 1245677899999999999999999999999999999999999999999999999999999999999999985
Q ss_pred ccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHccC
Q psy13453 195 VRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLRGK 274 (764)
Q Consensus 195 P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~~~ 274 (764)
+ .+.++.++.++|.++|+++++.+.+++..++|++++++++++++++.+++.|+++.+++.++.
T Consensus 415 ~----------------~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~~~~~~ 478 (486)
T 1js3_A 415 G----------------SDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAELLAAE 478 (486)
T ss_dssp S----------------CHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred C----------------hHHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 2 234678899999999998888888889999999999999999999999999999998887655
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-29 Score=284.89 Aligned_cols=257 Identities=17% Similarity=0.222 Sum_probs=210.5
Q ss_pred cccccCCcceeeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccCchhh
Q psy13453 10 LAYPSETLSLLIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQSLNAP 88 (764)
Q Consensus 10 ~~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDpi~~i 88 (764)
.+|+|++ .|||+.|+++++|+|.++|+.||++++++||+++|+++|+++.++|..|.+ |+++|+|++|++||+++|
T Consensus 191 ~v~~s~~---~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I 267 (504)
T 2okj_A 191 VLFTSEQ---SHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEI 267 (504)
T ss_dssp EEEEETT---SCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHH
T ss_pred EEEECCc---chHHHHHHHHHcCCCcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHH
Confidence 4888888 799999999999998778999999999999999999999998888877877 699999999999999998
Q ss_pred hc-----CCCceecccc--------------------------cc-----cc-ceeeeecCCCccccc------cc----
Q psy13453 89 VS-----NGPLKVGGVL--------------------------RR-----VY-SSCLVPRGQKSLRTT------VL---- 121 (764)
Q Consensus 89 a~-----~~wlHVDa~l--------------------------~~-----~y-~s~ll~rd~~~l~~~------~s---- 121 (764)
++ ++|+|||++. .| ++ ++++++|++..+... +.
T Consensus 268 ~~la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~ 347 (504)
T 2okj_A 268 ADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPD 347 (504)
T ss_dssp HHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSC
T ss_pred HHHHHHcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCc
Confidence 87 9999999941 11 22 467888876443321 11
Q ss_pred ----cccccCCcccCCCCcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeC--CCCceeEEEEeec
Q psy13453 122 ----FHFLFQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVC--PPSMGLVCFRLKV 195 (764)
Q Consensus 122 ----~~~d~~d~tle~SRr~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~--~P~l~iV~Fry~P 195 (764)
..+++.+|++++|||++++++|++|+.+|.+||++++++.+++++++++.|+++|+|+++. +|.+++|||++.|
T Consensus 348 ~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~~~ 427 (504)
T 2okj_A 348 KQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIP 427 (504)
T ss_dssp CSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEEEECC
T ss_pred ccccCcCCcccCCCCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeC
Confidence 1245778999999999999999999999999999999999999999999999999999998 6999999999986
Q ss_pred cccccccccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCe-eEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 196 RFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDR-LFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 196 ~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~-~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
........ ........++.+.++.++|.++|+++++.+.+.+. .++|++++|+.|+++|++.+++.|+++++++
T Consensus 428 ~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 502 (504)
T 2okj_A 428 QSLRGVPD-SPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 502 (504)
T ss_dssp GGGSSCCC-CHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred cccccccc-chhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 43211000 00000112345778999999999988887777764 6999999999999999999999999887654
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.8e-29 Score=281.77 Aligned_cols=245 Identities=20% Similarity=0.243 Sum_probs=204.6
Q ss_pred cccccCCcceeeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccCchhh
Q psy13453 10 LAYPSETLSLLIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQSLNAP 88 (764)
Q Consensus 10 ~~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDpi~~i 88 (764)
.+++|++ .|||+.|+++++|+|.++|+.||+|++++||+++|+++|+++.++|..|++ |+++|+|++|.+||+++|
T Consensus 204 ~v~~s~~---~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I 280 (497)
T 2qma_A 204 RIVCSKK---SHFTVQKSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFI 280 (497)
T ss_dssp EEEEETT---SCTHHHHHHHHTTSCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHH
T ss_pred EEEECCC---chHHHHHHHHHcCCCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHH
Confidence 4888887 899999999999998778999999999999999999999998877776766 699999999999999998
Q ss_pred hc-----CCCceecccc-------------------------ccc-----c-ceeeeecCCCcccccccc----------
Q psy13453 89 VS-----NGPLKVGGVL-------------------------RRV-----Y-SSCLVPRGQKSLRTTVLF---------- 122 (764)
Q Consensus 89 a~-----~~wlHVDa~l-------------------------~~~-----y-~s~ll~rd~~~l~~~~s~---------- 122 (764)
++ ++|+|||++. .++ + +++++++++..+.. +..
T Consensus 281 ~~l~~~~~~~l~vD~a~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p~~~G~l~~~~~~~~~~-~~~~~~yl~~~~~ 359 (497)
T 2qma_A 281 ADMAVKHDMWMHVDGAYGGALILSSHKSRLKGVERAHSISVDFHKLFYQTISCGALLVNDKSNFKF-LLHHADYLNREHD 359 (497)
T ss_dssp HHHHHHHTCEEEEEETTGGGGGGSTTGGGGTTGGGCSEEEEETTTTTCCCSSCEEEEESCGGGGGG-GCC----------
T ss_pred HHHHHHcCCEEEEehhhhHHHHhCcchHhhcCcccCCEEEEcchhccCCCcceEEEEEeCHHHHHH-hcCCchhcCCccc
Confidence 87 9999999941 122 2 36777777654321 111
Q ss_pred -ccccCCcccCCCCcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccc
Q psy13453 123 -HFLFQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKL 201 (764)
Q Consensus 123 -~~d~~d~tle~SRr~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~ 201 (764)
.+++.++++++||+++++++|++++.+|.+||++++++..+++++|++.|+++++|+++.+|..++|||++.+..
T Consensus 360 ~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~---- 435 (497)
T 2qma_A 360 ELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSLSTVLFRATHET---- 435 (497)
T ss_dssp ----------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCCSSSEEEEEECCSS----
T ss_pred cCCCccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCCCceEEEEEEcCCc----
Confidence 145667899999999999999999999999999999999999999999999999999999999999999987521
Q ss_pred cccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 202 DNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 202 ~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
...++++.++.++|.++|+++...+.+++..++|++++|+.+++++++.+++.|+++.+++
T Consensus 436 --------~~~~~l~~~l~~~l~~~G~~~~~~~~~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 496 (497)
T 2qma_A 436 --------ADLDELNKALRLEALTRGIAVLGETIVDGKTALKFTILNPCLTTSDFESLLSKINMLAVEL 496 (497)
T ss_dssp --------SCHHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred --------cCHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 1234678899999999999988888888889999999999999999999999999987653
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.7e-29 Score=283.32 Aligned_cols=258 Identities=19% Similarity=0.211 Sum_probs=210.7
Q ss_pred cc-cccccCCcceeeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccCc
Q psy13453 8 PK-LAYPSETLSLLIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQSL 85 (764)
Q Consensus 8 ~~-~~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDpi 85 (764)
|+ .+++|+. .|||+.|+++++|++.++++.||++++++||+++|+++|+++.++|..|.+ |+++|+|++|++||+
T Consensus 202 ~~~~vl~s~~---~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l 278 (515)
T 2jis_A 202 PPLALFTSKE---CHYSIQKGAAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPL 278 (515)
T ss_dssp CCEEEEEETT---SCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCH
T ss_pred CCeEEEECCC---ccHHHHHHHHHcCCCCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCH
Confidence 45 4888988 799999999999998778999999999999999999999998888877777 699999999999999
Q ss_pred hhhhc-----CCCceecccc-------------------------------cccc-ceeeeecCC-Cccccccc------
Q psy13453 86 NAPVS-----NGPLKVGGVL-------------------------------RRVY-SSCLVPRGQ-KSLRTTVL------ 121 (764)
Q Consensus 86 ~~ia~-----~~wlHVDa~l-------------------------------~~~y-~s~ll~rd~-~~l~~~~s------ 121 (764)
++|++ ++|+|||++. ..++ ++++++|++ ..+...+.
T Consensus 279 ~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl 358 (515)
T 2jis_A 279 EAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYL 358 (515)
T ss_dssp HHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC-----
T ss_pred HHHHHHHHHcCCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhc
Confidence 99887 9999999931 1223 468888887 43332111
Q ss_pred --------cccccCCcccCCCCcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEe
Q psy13453 122 --------FHFLFQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRL 193 (764)
Q Consensus 122 --------~~~d~~d~tle~SRr~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry 193 (764)
..+++++++++++||++++++|++|+.+|.+||++++++.+++++++++.|+++|+|+++.+|.+++||||+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~ 438 (515)
T 2jis_A 359 FQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFWF 438 (515)
T ss_dssp ----CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSEEEEEE
T ss_pred cCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeEEEEEE
Confidence 114577889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCC-eeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 194 KVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQD-RLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 194 ~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g-~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
.|++.++... .....+..+++|.++.++|.++|+++++.+.+.+ ..++|++++++.++++|++.+++.|++++++
T Consensus 439 ~p~~~~~~~~-~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~ 514 (515)
T 2jis_A 439 VPPSLRGKQE-SPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQD 514 (515)
T ss_dssp CCGGGTTCTT-STTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred eCcccccccc-chhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 8753221000 0000011233456789999999998888777765 4799999999999999999999999887643
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.3e-28 Score=274.93 Aligned_cols=246 Identities=18% Similarity=0.219 Sum_probs=205.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHcC-CCCCCCCCccccccCCCC-ChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHH
Q psy13453 492 PGEMPEEGEDWRHIMRDMNTVIMP-GITHWQSPQFNAYFPTGS-SYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMN 569 (764)
Q Consensus 492 ~~~lP~~g~~~~~il~~l~~~i~~-~~~~~~~P~~~~~~~~~~-~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~ 569 (764)
...+|++|.+.+++++++++.... ....|.||+|++++..+. ....++.+.+..+.+.+...|..+|...++|.++.+
T Consensus 35 ~~~lp~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 114 (497)
T 3mc6_A 35 FPQLPSNGIPQDDVIEELNKLNDLIPHTQWKEGKVSGAVYHGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVS 114 (497)
T ss_dssp CSSCCSSCCCHHHHHHHHHHHHHSSCCCCGGGTCBSSSCSCCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHH
T ss_pred ccCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCCCEeeecCCCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHH
Confidence 357899999999999999998763 556799999999976554 344566677777777788889999999999999999
Q ss_pred HHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHH
Q psy13453 570 WLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAI 649 (764)
Q Consensus 570 ~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~ 649 (764)
|+++++|++.+ ...++||+|||+||++++.++|++...+.+ .++..|+++..+|+++.+++.
T Consensus 115 ~la~~~g~~~~-------~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g-----------~~~~~Vi~~~~~h~~~~~~~~ 176 (497)
T 3mc6_A 115 MVLRMFNAPSD-------TGCGTTTSGGTESLLLACLSAKMYALHHRG-----------ITEPEIIAPVTAHAGFDKAAY 176 (497)
T ss_dssp HHHHHTTCCTT-------TCCEEEESSHHHHHHHHHHHHHHHHHHHSC-----------CSSCEEEEETTSCHHHHHHHH
T ss_pred HHHHHhCCCCC-------CCeEEEcCcHHHHHHHHHHHHHHHHHhcCC-----------CCCceEEEeCCccHHHHHHHH
Confidence 99999999821 147899999999999999999886543211 113478999999999999999
Q ss_pred hCCCceEEEecCC-CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEecccccccc
Q psy13453 650 IGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSAL 728 (764)
Q Consensus 650 ~lGl~v~~Vp~d~-~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l 728 (764)
.+|++++.||+++ ++++|+++|+++|+++ +.+|+++.+++.+|.++|+++|+++|++||+|+|||+||+++..
T Consensus 177 ~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~------~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~ 250 (497)
T 3mc6_A 177 YFGMKLRHVELDPTTYQVDLGKVKKFINKN------TVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIV 250 (497)
T ss_dssp HSCCEEEEECBCTTTCSBCTTTTGGGCCSS------EEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHH
T ss_pred HcCCeEEEEecCcccCcCCHHHHHHHHhhC------CEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhh
Confidence 9999999999997 8999999999998653 67999999999999999999999999999999999999998765
Q ss_pred c---------cchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 729 L---------LPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 729 ~---------~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
. +|.++....| +|++++++|||++.|.+||+++
T Consensus 251 ~f~~~~~~~~~~~~~~~~~g---~d~~~~s~~K~l~~~~~~g~~~ 292 (497)
T 3mc6_A 251 SFMEKAGYKNLPLLDFRVPG---VTSISCDTHKYGFAPKGSSVIM 292 (497)
T ss_dssp GGGTTTTCCSCCCCSTTSTT---CCEEEEETTTTTCCCSSCEEEE
T ss_pred hhhhhhcccCCccccccCCC---CcEEEECchhhcCCCCCceeEE
Confidence 3 2233333344 5999999999999999999874
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=271.69 Aligned_cols=247 Identities=16% Similarity=0.148 Sum_probs=210.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCccccccCCC-CChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHH
Q psy13453 493 GEMPEEGEDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTG-SSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWL 571 (764)
Q Consensus 493 ~~lP~~g~~~~~il~~l~~~i~~~~~~~~~P~~~~~~~~~-~~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~l 571 (764)
..+|++|.+.+++++++++.+.++...|.+++|++++..+ ......+.+.+...++.+...+..+|....+|.++.+|+
T Consensus 69 ~~lp~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~l 148 (514)
T 3mad_A 69 ARLPRAGLPRAEILAEIAAMGAAESPAWRDGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMT 148 (514)
T ss_dssp SSCCSSCCCHHHHHHHHHHHHHHHHHHHHTTCBSSSCSCCCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHH
Confidence 5689999999999999999888888889999999998654 455678888888889999999999999999999999999
Q ss_pred HHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhC
Q psy13453 572 GKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIG 651 (764)
Q Consensus 572 a~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~l 651 (764)
++++|++.+ .+..+|+||+|||+||..++.+++.....+.+ .++..|+++..+|.++.++++.+
T Consensus 149 a~~~g~~~~-----~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g-----------~~~d~Vi~~~~~~~~~~~~~~~~ 212 (514)
T 3mad_A 149 AHMLGGDAA-----GGTVCGTVTSGGTESLLLAMKTYRDWARATKG-----------ITAPEAVVPVSAHAAFDKAAQYF 212 (514)
T ss_dssp HHHTTGGGG-----TSCCEEEEESSHHHHHHHHHHHHHHHHHHHHC-----------CSSCEEEEETTSCTHHHHHHHHH
T ss_pred HHHcCCCCc-----cCCcceEEcCcHHHHHHHHHHHHHHHhhhhcC-----------CCCCeEEEeCccchHHHHHHHHc
Confidence 999999731 01246799999999999999999876533211 12347899999999999999999
Q ss_pred CCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccc--
Q psy13453 652 DVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALL-- 729 (764)
Q Consensus 652 Gl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~-- 729 (764)
|++++.||++++++||+++|+++|+++ +.+|+++.+++.+|.++|+++|+++|++||+|||||+||+++.+.
T Consensus 213 G~~v~~v~~~~~~~~d~~~Le~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~ 286 (514)
T 3mad_A 213 GIKLVRTPLDADYRADVAAMREAITPN------TVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWA 286 (514)
T ss_dssp TCEEEEECBCTTSCBCHHHHHHHCCTT------EEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHH
T ss_pred CCeeEEeeeCCCCCCCHHHHHHHhccC------CEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhH
Confidence 999999999999999999999998653 568999999999999999999999999999999999999987653
Q ss_pred ------cchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 730 ------LPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 730 ------~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
++.++....| +|++++++|||++.|+++|+++
T Consensus 287 ~~~g~~~~~~~~~~~g---~d~~~~s~~K~l~~~~~~g~~~ 324 (514)
T 3mad_A 287 ERLGYPVPPFDFRLEG---VTSVSADTHKYGYGAKGTSVIL 324 (514)
T ss_dssp HHTTCCCCCCSTTSTT---CCEEEECTTTTTCCCSSCEEEE
T ss_pred HhcCCCCCcccccCCC---CcEEEECchhccCCCCCeEEEE
Confidence 1233333334 5999999999999999999874
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.94 E-value=7.5e-27 Score=263.69 Aligned_cols=266 Identities=16% Similarity=0.163 Sum_probs=197.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCccc
Q psy13453 447 VTPPPNEEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPQFN 526 (764)
Q Consensus 447 ~~~~~~~~~~~~~~~~v~~i~~y~~~~~~~~v~~~~~p~~l~~~l~~~lP~~g~~~~~il~~l~~~i~~~~~~~~~P~~~ 526 (764)
...+=++.|.+.+++.++...++++++-. ...+|++|.+.+++.+.+.+....+. ..|+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~lp~~g~~~~~i~~~~~~~~~~~~-----~~yl 84 (456)
T 2z67_A 26 IEGLIPKNMEKRGELVLNEYLKEIEDVFN----------------HRKIPENGIDDEKIKLFLKFLSMMDT-----DKDP 84 (456)
T ss_dssp CCSSSCHHHHHHHHHHHHHHTHHHHHHHH----------------HCSCCSSCCCHHHHHHHHHHHHTTBG-----GGCT
T ss_pred hhccCcHHHHHHHHHHHHHHHHHHHHhhc----------------cCCCCCCCCCHHHHHHHHHHHHhccc-----cccc
Confidence 44555788999999988877777766311 13578999999999888777543322 2455
Q ss_pred cccCCCCChHHHHHHHHHH----hhc----------ccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEE
Q psy13453 527 AYFPTGSSYPSIVGDMLSG----AFG----------LIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGI 592 (764)
Q Consensus 527 ~~~~~~~~~~~~lad~l~~----~lN----------~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~Gv 592 (764)
++..+++.+..++..+... ++| .|. .|..+|.+..+++++.+|+++++|++. . ++
T Consensus 85 d~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~g~~~---------~-~~ 153 (456)
T 2z67_A 85 KSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQP-KASGASIMYALTNKILESFFKQLGLNV---------H-AI 153 (456)
T ss_dssp TCEECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCT-TBHHHHHHHHHHHHHHHHHHHHTTCCC---------E-EE
T ss_pred cccccccccccccccccCccccccCCCccHHHHHHhhCc-ccccCcHHHHHHHHHHHHHHHHcCCCC---------C-EE
Confidence 5554444333322222211 111 222 455667789999999999999999975 3 89
Q ss_pred EeCChH-HHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEec---CCCCcccH
Q psy13453 593 IQSTAS-EATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRS---DDNGVLRG 668 (764)
Q Consensus 593 fTsGgT-eANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~---d~~g~md~ 668 (764)
||+||| ++|+.++.++|... + +..|++++.+|+|+.++++..|+.++.|+. +++|++|+
T Consensus 154 ~t~g~te~a~~~al~~~~~~~-~----------------~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~~d~ 216 (456)
T 2z67_A 154 ATPISTGMSISLCLSAARKKY-G----------------SNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPV 216 (456)
T ss_dssp EESSCHHHHHHHHHHHHHHHH-C----------------CCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCH
T ss_pred EeCcHHHHHHHHHHHHHHHhc-C----------------CCEEEEECCCcHHHHHHHHHcCCCceEEEEeccCCCCCcCH
Confidence 999999 57777888776532 1 113566667999999999999999988886 78899999
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEecccccccc-ccchhhhhhcCCCcccEEE
Q psy13453 669 DALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSAL-LLPEYAHLKRGLEYVDSFD 747 (764)
Q Consensus 669 ~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l-~~~~~r~~l~gie~aDSit 747 (764)
++|+++|+.+..++ .+++|+.+.++|.+|.++|+++|+++|++||+|+|||+|||+..+ ..+.....+.+ .+|+++
T Consensus 217 ~~l~~~i~~~~~~~-~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~--~~D~~~ 293 (456)
T 2z67_A 217 EDIENAIKKEIELG-NRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKY--RVDAVV 293 (456)
T ss_dssp HHHHHHHHHHHHTT-CCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTS--CCSEEE
T ss_pred HHHHHHHHHHhhCC-CeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCC--CCCEEE
Confidence 99999994332222 478889999999999999999999999999999999999998765 34544444444 689999
Q ss_pred EcCCccCCCCcCceeeC
Q psy13453 748 FNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 748 ~d~HK~l~~P~~~g~l~ 764 (764)
+|+|||+++|.++|+++
T Consensus 294 ~s~hK~~~~p~g~G~l~ 310 (456)
T 2z67_A 294 SSSDKNLLTPIGGGLVY 310 (456)
T ss_dssp EEHHHHHCCCSSCEEEE
T ss_pred EcCCCCcCCCCCeEEEE
Confidence 99999999999999875
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.9e-23 Score=224.68 Aligned_cols=246 Identities=20% Similarity=0.146 Sum_probs=194.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHcCCCCCCCCCccccccCCCCChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHH
Q psy13453 494 EMPEEGEDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGK 573 (764)
Q Consensus 494 ~lP~~g~~~~~il~~l~~~i~~~~~~~~~P~~~~~~~~~~~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~ 573 (764)
.+|+.|.+.+++++++.+.. +...+|.+|+|+++..+++.+ . +.+.+...+..+...+...|....++.++.+|+++
T Consensus 4 ~lp~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~-~-v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~ 80 (397)
T 3f9t_A 4 NMQEKGVSEKEILEELKKYR-SLDLKYEDGNIFGSMCSNVLP-I-TRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGS 80 (397)
T ss_dssp SCCSSCCCHHHHHHHHHHHH-TTSCCGGGTCBCSCSCCCCCT-H-HHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHhh-ccCCCCCCCCeEEEecCCCcH-H-HHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHH
Confidence 57999999999999999865 445568899999999776654 3 34555666655444455567889999999999999
Q ss_pred HcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCC
Q psy13453 574 ALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDV 653 (764)
Q Consensus 574 llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl 653 (764)
++|.+. ...+||+|||+||..++.+++..+....... . +..++..|+++..+|+++.+++...|+
T Consensus 81 ~~~~~~---------~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~---~---~~~~gd~vl~~~~~~~~~~~~~~~~g~ 145 (397)
T 3f9t_A 81 LLNNKD---------AYGHIVSGGTEANLMALRCIKNIWREKRRKG---L---SKNEHPKIIVPITAHFSFEKGREMMDL 145 (397)
T ss_dssp HTTCTT---------CEEEEESCHHHHHHHHHHHHHHHHHHHHHTT---C---CCCSSCEEEEETTCCTHHHHHHHHHTC
T ss_pred HhCCCC---------CCEEEecCcHHHHHHHHHHHHHHHHhhhhhc---c---cCCCCeEEEECCcchhHHHHHHHHcCc
Confidence 999876 3689999999999999999887643221110 0 112345788999999999999999999
Q ss_pred ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchh
Q psy13453 654 PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEY 733 (764)
Q Consensus 654 ~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~ 733 (764)
+++.||+++++.+|+++|+++|++. .+.+|+++.+++.+|.++|+++|+++|++||+|+|+|+||+++.+.....
T Consensus 146 ~~~~v~~~~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~ 220 (397)
T 3f9t_A 146 EYIYAPIKEDYTIDEKFVKDAVEDY-----DVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDD 220 (397)
T ss_dssp EEEEECBCTTSSBCHHHHHHHHHHS-----CCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCG
T ss_pred eeEEEeeCCCCcCCHHHHHHHHhhc-----CCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhccc
Confidence 9999999999999999999999872 25588889999999999999999999999999999999999875532211
Q ss_pred ---------hhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 734 ---------AHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 734 ---------r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
...+. . .+|++++++||+++.|.++|+++
T Consensus 221 ~~~~~~~~~~~~~~-~-~~~~~~~s~~K~~~~~~~~g~~~ 258 (397)
T 3f9t_A 221 KYKKKGVNYKFDFS-L-GVDSITIDPHKMGHCPIPSGGIL 258 (397)
T ss_dssp GGCCTTCCCCCSGG-G-TCSEEECCTTTTTCCCSSCEEEE
T ss_pred cccccccccccccc-c-cCCeEEEccccccCCCCCceEEE
Confidence 11111 1 46999999999999999999763
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.4e-23 Score=231.97 Aligned_cols=232 Identities=13% Similarity=0.163 Sum_probs=185.9
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCC-CCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccCchhhhc-------
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPD-SEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQSLNAPVS------- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~-~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDpi~~ia~------- 90 (764)
.|||+.|+++++|+.. +.||+++ +++||+++|+++|+++ |.+ |++.|++++|++||+++|++
T Consensus 148 ~h~~~~~~~~~~G~~v---~~v~~~~~~~~~d~~~l~~~i~~~------t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~ 218 (452)
T 2dgk_A 148 VQICWHKFARYWDVEL---REIPMRPGQLFMDPKRMIEACDEN------TIGVVPTFGVTYTGNYEFPQPLHDALDKFQA 218 (452)
T ss_dssp CCHHHHHHHHHTTCEE---EECCCBTTBCSCCHHHHHHHCCTT------EEEEECBBSCTTTCBBCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHcCceE---EEEecCCCCCeECHHHHHHHHhhC------CEEEEEEcCCcCCcccCCHHHHHHHHHHHhh
Confidence 6999999999999976 9999987 7999999999999753 455 79999999999999999874
Q ss_pred ----CCCceeccccc---------------------------ccc------ceeeeecCCCcccccccccccc-----CC
Q psy13453 91 ----NGPLKVGGVLR---------------------------RVY------SSCLVPRGQKSLRTTVLFHFLF-----QH 128 (764)
Q Consensus 91 ----~~wlHVDa~l~---------------------------~~y------~s~ll~rd~~~l~~~~s~~~d~-----~d 128 (764)
++|+|||++.. +++ +++++++++..+...+.....| .+
T Consensus 219 ~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (452)
T 2dgk_A 219 DTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGT 298 (452)
T ss_dssp HHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECCTTCCEEE
T ss_pred ccCCCCcEEEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccCCCCCeEEEEEcCHHHHHHHhccCccccCCCCCC
Confidence 68999999521 121 2567777655443333322233 36
Q ss_pred cccCCCCcc-cHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCC----CCceeEEEEeeccccccccc
Q psy13453 129 WQIPLGRRF-RALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCP----PSMGLVCFRLKVRFWDKLDN 203 (764)
Q Consensus 129 ~tle~SRr~-~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~----P~l~iV~Fry~P~~~~~~~~ 203 (764)
++++++|++ .++++|++|+.+|.+||++++++..++++++.+.|+++++|+++.+ +.+++|||++.+..
T Consensus 299 ~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f~~~~~~------ 372 (452)
T 2dgk_A 299 FAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGE------ 372 (452)
T ss_dssp CCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEEEECTTC------
T ss_pred cccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEEEEEEecCcc------
Confidence 678999977 8899999999999999999999999999999999999999999875 78899999986321
Q ss_pred cccCccCCccHHH-HHHHHHHHhcCc---EEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHccCC
Q psy13453 204 LFGTISFGDNDLN-KAVYDRIIARKV---IYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLRGKS 275 (764)
Q Consensus 204 ~~~~~~~~~d~~n-~~L~~~L~~~G~---~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~~~~ 275 (764)
.+.+| .++.++|.++|+ .+.+.+.+++..++|+++++++| +++++.+++.|+++.+++.+.+.
T Consensus 373 --------~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t-~e~id~li~~l~~~~~~~~~~~~ 439 (452)
T 2dgk_A 373 --------DPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFE-MDFAELLLEDYKASLKYLSDHPK 439 (452)
T ss_dssp --------CCSCCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTCC-HHHHHHHHHHHHHHHHHHHHCGG
T ss_pred --------cccCCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCCC-HHHHHHHHHHHHHHHHHHHhCCC
Confidence 11133 578899999998 34444556667899999998885 99999999999999988876553
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7e-23 Score=234.21 Aligned_cols=257 Identities=14% Similarity=0.117 Sum_probs=200.9
Q ss_pred ccccCCcceeeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc
Q psy13453 11 AYPSETLSLLIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS 90 (764)
Q Consensus 11 ~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~ 90 (764)
.+.++. .|+|+.++++.+|++. +.||++++++||+++|+++|+++ +-+++.+.+++++|.++|+++|++
T Consensus 195 Vi~~~~---~~~~~~~~~~~~G~~v---~~v~~~~~~~~d~~~Le~~i~~~-----~~~v~~~~~~nptG~~~~l~~i~~ 263 (514)
T 3mad_A 195 AVVPVS---AHAAFDKAAQYFGIKL---VRTPLDADYRADVAAMREAITPN-----TVVVAGSAPGYPHGVVDPIPEIAA 263 (514)
T ss_dssp EEEETT---SCTHHHHHHHHHTCEE---EEECBCTTSCBCHHHHHHHCCTT-----EEEEEEETTCTTTCCCCCHHHHHH
T ss_pred EEEeCc---cchHHHHHHHHcCCee---EEeeeCCCCCCCHHHHHHHhccC-----CEEEEEeCCCCCCccccCHHHHHH
Confidence 455555 7999999999999986 99999999999999999999753 224478999999999999999886
Q ss_pred -----CCCceeccccc-------------------------------ccc------ceeeeecCCCcccccccccc----
Q psy13453 91 -----NGPLKVGGVLR-------------------------------RVY------SSCLVPRGQKSLRTTVLFHF---- 124 (764)
Q Consensus 91 -----~~wlHVDa~l~-------------------------------~~y------~s~ll~rd~~~l~~~~s~~~---- 124 (764)
++|+|||++.. +++ +++++.+++......+....
T Consensus 264 la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 343 (514)
T 3mad_A 264 LAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPG 343 (514)
T ss_dssp HHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSHHHHTTTCEEESSCTT
T ss_pred HHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEEeCHHHhccccccccccCC
Confidence 99999999621 111 13455555433222211111
Q ss_pred -ccCCcccCCCCccc-HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeecccccccc
Q psy13453 125 -LFQHWQIPLGRRFR-ALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLD 202 (764)
Q Consensus 125 -d~~d~tle~SRr~~-ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~ 202 (764)
.+..+++.++|... ++++|++++.+|.+||.+++++..++++++.+.|++.++++++.++ .+++.|+..
T Consensus 344 ~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~~~~~~~~~-------- 414 (514)
T 3mad_A 344 GLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDP-LWVIAVASD-------- 414 (514)
T ss_dssp CSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCC-SSEEEEECS--------
T ss_pred CcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCC-eEEEEEeCC--------
Confidence 23356778888554 6799999999999999999999999999999999999999998877 456677431
Q ss_pred ccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHccCCCCCCCcc
Q psy13453 203 NLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLRGKSLGPAGKV 282 (764)
Q Consensus 203 ~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~~~~~~~~~~~ 282 (764)
..+ ..++.++|.++|+.+ ...+.+..+|++++++++++++++++++.|+++.+++.+.+...
T Consensus 415 --------~~~--~~~l~~~L~~~Gi~v---~g~~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~~~~~~----- 476 (514)
T 3mad_A 415 --------ELN--IYQVMEEMAGRGWRL---NGLHRPPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRAHPEKA----- 476 (514)
T ss_dssp --------SSC--HHHHHHHHHTTTCBC---EEETTTTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHHCTTCC-----
T ss_pred --------CCC--HHHHHHHHHhcCCEe---ccCCCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhCCCCC-----
Confidence 111 247889999999865 33455668999999999999999999999999998887665431
Q ss_pred cCccchhhccccCCCcchhhccccc
Q psy13453 283 MGGAQAIAGTESSGPADQVLGEIQP 307 (764)
Q Consensus 283 ~~~~~a~~g~~~~~pd~~~~~~~~~ 307 (764)
+|.+++||+++++|| ++|+||+-
T Consensus 477 -~~~~~~yg~~~~~~~-~~~~~~~~ 499 (514)
T 3mad_A 477 -TGMAPVYGMAAAAPP-ELVRQVLT 499 (514)
T ss_dssp -CTTHHHHHHHHHSCH-HHHHHHHH
T ss_pred -CCceehhhhcccCCH-HHHHHHHH
Confidence 567999999999999 99998864
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=224.00 Aligned_cols=238 Identities=14% Similarity=0.151 Sum_probs=190.2
Q ss_pred cccccCCcceeeeeHHHHHhhcCCCCCCeEEecCCCC-CcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccCchh
Q psy13453 10 LAYPSETLSLLIYESFKATHSLSGTPDQVRLSGLPDS-EWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQSLNA 87 (764)
Q Consensus 10 ~~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpvd~~-~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDpi~~ 87 (764)
.+++|+. .|+|+.|+++++|++. +.||++++ ++||+++|+++|+++ |.+ +.+.|+|++|.+||+++
T Consensus 156 ~vi~~~~---~h~s~~~~~~~~G~~~---~~v~~~~~~~~~d~~~l~~~i~~~------t~~v~~~~~~n~tG~~~~l~~ 223 (502)
T 3hbx_A 156 NIVTGAN---VQVCWEKFARYFEVEL---KEVKLSEGYYVMDPQQAVDMVDEN------TICVAAILGSTLNGEFEDVKL 223 (502)
T ss_dssp EEEEETT---CCHHHHHHHHHTTCEE---EEECCBTTBCSCCHHHHHHHCCTT------EEEEEEEBSCTTTCCBCCHHH
T ss_pred EEEEcCC---chHHHHHHHHHcCcee---EEEecCCCcCcCCHHHHHHHHhhC------CEEEEEecCCCCCCcccCHHH
Confidence 3567776 7999999999999987 99999875 999999999999863 455 69999999999999999
Q ss_pred hhc-----------CCCceeccccc---------------------------ccc------ceeeeecCCCccccccccc
Q psy13453 88 PVS-----------NGPLKVGGVLR---------------------------RVY------SSCLVPRGQKSLRTTVLFH 123 (764)
Q Consensus 88 ia~-----------~~wlHVDa~l~---------------------------~~y------~s~ll~rd~~~l~~~~s~~ 123 (764)
|++ ++|+|||++.. ++| +++++++++..+...+...
T Consensus 224 I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g~G~~~~~~~~~l~~~~~~~ 303 (502)
T 3hbx_A 224 LNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFH 303 (502)
T ss_dssp HHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEE
T ss_pred HHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCCCCceEEEECcccccCCCCCeEEEEEeCHHHhhHHhccC
Confidence 774 68999999531 122 2457777766654444333
Q ss_pred ccc-----CCcccCCCCcc-cHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCC-CCceeEEEEeecc
Q psy13453 124 FLF-----QHWQIPLGRRF-RALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCP-PSMGLVCFRLKVR 196 (764)
Q Consensus 124 ~d~-----~d~tle~SRr~-~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~-P~l~iV~Fry~P~ 196 (764)
..| ..+++++||++ .++++|++|+.+|.+||.+++++.++++++|++.|+++++|+++.+ |.+++|+|++.+.
T Consensus 304 ~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~ 383 (502)
T 3hbx_A 304 INYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDS 383 (502)
T ss_dssp ECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSSSSEEEEEESSC
T ss_pred cccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCCceEEEEEecCC
Confidence 232 35678899965 8899999999999999999999999999999999999999999988 8999999998531
Q ss_pred ccccccccccCccCCccHHH-HHHHHHHHhcCcEEEE---eceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHc
Q psy13453 197 FWDKLDNLFGTISFGDNDLN-KAVYDRIIARKVIYIV---KGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLR 272 (764)
Q Consensus 197 ~~~~~~~~~~~~~~~~d~~n-~~L~~~L~~~G~~~vs---~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~ 272 (764)
. .++ .++.++|.++|+++.. .+.+++..++|+++. ..+++++++.++++|+++.+++.+
T Consensus 384 ~----------------~~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~-~~~t~edid~li~~L~~~l~~l~~ 446 (502)
T 3hbx_A 384 S----------------CHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIR-EDFSRTLAERLVIDIEKVMRELDE 446 (502)
T ss_dssp S----------------SCCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred C----------------cCCHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeC-CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 1 122 4789999999997432 334456789999765 566799999999999999998877
Q ss_pred cCCC
Q psy13453 273 GKSL 276 (764)
Q Consensus 273 ~~~~ 276 (764)
.+..
T Consensus 447 ~~~~ 450 (502)
T 3hbx_A 447 LPSR 450 (502)
T ss_dssp CC--
T ss_pred Cccc
Confidence 6643
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.7e-21 Score=216.63 Aligned_cols=244 Identities=16% Similarity=0.129 Sum_probs=181.6
Q ss_pred hhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCccccccCCCCChHHHHHHHHHHhhcccCcccc-CCchHHH
Q psy13453 484 PGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWL-SSPACTE 562 (764)
Q Consensus 484 p~~l~~~l~~~lP~~g~~~~~il~~l~~~i~~~~~~~~~P~~~~~~~~~~~~~~~lad~l~~~lN~n~~~~~-~sp~~t~ 562 (764)
|+.++...+..+| +.+-.++++.+.+....+...+.+..|++- ..+...+.++.++.....+.+..... .++...+
T Consensus 31 p~~~~~~~~~~lp--~~~e~~~~~~~~~l~~~~~~~~~~~~~lg~-~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~g~~~ 107 (474)
T 1wyu_B 31 PKEHLREVPPRLP--EVDELTLVRHYTGLSRRQVGVDTTFYPLGS-CTMKYNPKLHEEAARLFADLHPYQDPRTAQGALR 107 (474)
T ss_dssp CGGGBCSSCCCCC--CCCHHHHHHHHHHHHTTCCCTTTSCCCBTT-TCCCCCCHHHHHHHHTTSSCCTTSCGGGCHHHHH
T ss_pred CHHHhccCCCCCC--CCCHHHHHHHHHHHHhCCCCcccCcccccc-ccccCCHHHHHHHHHHHHhcCCCCchhhChHHHH
Confidence 3445444445688 788899999999977666544556677773 23333355555555443232332333 5888899
Q ss_pred HHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccc-cCceEEEecCCcc
Q psy13453 563 LEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDI-RNKLVAYTSDQSN 641 (764)
Q Consensus 563 lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~-~~~~vi~~S~~aH 641 (764)
++.++.+|+++++|++. ..++|+|||++++.|++++|...... +. .++..|++++.+|
T Consensus 108 l~~~l~~~la~~~g~~~----------~~~~~~ggt~a~~~al~~~~~~~~~~-----------Gd~~~r~~Vlv~~~~h 166 (474)
T 1wyu_B 108 LMWELGEYLKALTGMDA----------ITLEPAAGAHGELTGILIIRAYHEDR-----------GEGRTRRVVLVPDSAH 166 (474)
T ss_dssp HHHHHHHHHHHHHTCSE----------EECCCSSHHHHHHHHHHHHHHHHHHT-----------TCTTTCCEEEEETTSC
T ss_pred HHHHHHHHHHHHHCCCc----------eeecChHHHHHHHHHHHHHHHHHHhc-----------CCccCCCEEEEeCCcC
Confidence 99999999999999864 35688999999999999988653321 11 1234678899999
Q ss_pred hhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc-ccHHHHHHHHHhcCCEEEEe
Q psy13453 642 SSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF-DNLEELGPICQEYNIWLHVD 720 (764)
Q Consensus 642 ~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai-Dpl~eIa~i~~~~glwLHVD 720 (764)
.+..+++...|++++.||++++|++|+++|+++|.++ +.+|+++.++ .+|.+ +|+++|+++|++||+|+|+|
T Consensus 167 ~~~~~~~~~~G~~vv~v~~~~~~~~d~~~L~~~i~~~------t~~v~~~~pn-~~G~~~~~l~~i~~l~~~~g~~li~D 239 (474)
T 1wyu_B 167 GSNPATASMAGYQVREIPSGPEGEVDLEALKRELGPH------VAALMLTNPN-TLGLFERRILEISRLCKEAGVQLYYD 239 (474)
T ss_dssp THHHHHHHHTTCEEEEECBCTTSSBCHHHHHHHCSTT------EEEEEECSSC-TTSCCCTTHHHHHHHHHHHTCEEEEE
T ss_pred hhhHHHHHHCCCEEEEecCCCCCCcCHHHHHHhhCCC------ceEEEEECCC-CCcccCCCHHHHHHHHHHcCCEEEEe
Confidence 9999999999999999999999999999999998654 3477778775 59999 89999999999999999999
Q ss_pred ccccccccccchhhhhhcCCCcccEEEEcCCccCCCCc-----Cceee
Q psy13453 721 AAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNF-----DCSAM 763 (764)
Q Consensus 721 aA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~-----~~g~l 763 (764)
+||+.+.. ...+..-. .+|.+++|+||+++.|+ ++|++
T Consensus 240 ea~~~~~~--g~~~~~~~---g~di~~~s~~K~~~~p~g~gG~~~G~~ 282 (474)
T 1wyu_B 240 GANLNAIM--GWARPGDM---GFDVVHLNLHKTFTVPHGGGGPGSGPV 282 (474)
T ss_dssp GGGGGGTT--TTCCHHHH---TCSEEECCTTTTTCCCCTTSCCCCCCE
T ss_pred Cchhhhhc--cCCCcccC---CCcEEEEeCccccccCCCCCCCCeEEE
Confidence 99976553 11111111 36999999999999997 47765
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.7e-22 Score=224.68 Aligned_cols=259 Identities=16% Similarity=0.145 Sum_probs=183.6
Q ss_pred ccccCCcceeeeeHHHHHhhcCCCCCCeEEecCCC-CCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccCchhh
Q psy13453 11 AYPSETLSLLIYESFKATHSLSGTPDQVRLSGLPD-SEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQSLNAP 88 (764)
Q Consensus 11 ~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpvd~-~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDpi~~i 88 (764)
.+.++. .|+|+.++++++|+.. +.||+++ ++++|+++|+++|+++ |.+ +.+.+++++|.++|+++|
T Consensus 161 Vi~~~~---~h~~~~~~~~~~G~~~---~~v~~~~~~~~~d~~~l~~~i~~~------~~~v~~~~p~nptG~~~~l~~i 228 (497)
T 3mc6_A 161 IIAPVT---AHAGFDKAAYYFGMKL---RHVELDPTTYQVDLGKVKKFINKN------TVLLVGSAPNFPHGIADDIEGL 228 (497)
T ss_dssp EEEETT---SCHHHHHHHHHSCCEE---EEECBCTTTCSBCTTTTGGGCCSS------EEEEEEETTCTTTCCCCSCTTT
T ss_pred EEEeCC---ccHHHHHHHHHcCCeE---EEEecCcccCcCCHHHHHHHHhhC------CEEEEEECCCCCCCcCCCHHHH
Confidence 556666 7999999999999976 9999997 8999999999999753 445 799999999999999998
Q ss_pred hc-----CCCceeccccc--------------------------------ccc------ceeeeecCCCcccccccccc-
Q psy13453 89 VS-----NGPLKVGGVLR--------------------------------RVY------SSCLVPRGQKSLRTTVLFHF- 124 (764)
Q Consensus 89 a~-----~~wlHVDa~l~--------------------------------~~y------~s~ll~rd~~~l~~~~s~~~- 124 (764)
++ ++|+|||++.. +++ +++++++++......+....
T Consensus 229 ~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~ 308 (497)
T 3mc6_A 229 GKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPA 308 (497)
T ss_dssp TTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTT
T ss_pred HHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCCCCceeEEecCHHHHhhhhccccc
Confidence 87 89999999632 011 13444444322221111111
Q ss_pred ----ccCCcccCCCC-cccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEeCCCCceeEEEEeecccc
Q psy13453 125 ----LFQHWQIPLGR-RFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQ-DDRFELVCPPSMGLVCFRLKVRFW 198 (764)
Q Consensus 125 ----d~~d~tle~SR-r~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~-~p~~ell~~P~l~iV~Fry~P~~~ 198 (764)
.+.++++.++| +...+.+|++++.+|.+||.+++++..++++++++.|++ .|+++++.+|..++++|+..
T Consensus 309 ~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~~~~v~~~~~---- 384 (497)
T 3mc6_A 309 WTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVISFSSK---- 384 (497)
T ss_dssp CTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCCSSEEEEECT----
T ss_pred ccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCeeEEEEeCC----
Confidence 23566777777 444567999999999999999999999999999999999 69999999999999999742
Q ss_pred ccccccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHccCCCCC
Q psy13453 199 DKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLRGKSLGP 278 (764)
Q Consensus 199 ~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~~~~~~~ 278 (764)
+.+ ..++.++|.++|+.+- ..+.+..+|++++ .+++++++.+++.|+++.+++.+.+..+
T Consensus 385 ------------~~~--~~~l~~~L~~~Gi~v~---~~~~~~~~ri~~~--~~t~e~i~~~~~~L~~~l~~~~~~~~~~- 444 (497)
T 3mc6_A 385 ------------TLN--IHELSDRLSKKGWHFN---ALQKPVALHMAFT--RLSAHVVDEICDILRTTVQELKSESNSK- 444 (497)
T ss_dssp ------------TTT--HHHHHHHHHTTTCBCE---ECCSSCCEEEECC--TTTTCTHHHHHHHHHHHHHHHTCC-----
T ss_pred ------------CCC--HHHHHHHHHhCCEEEe---cCCCCCeEEEEEe--CCCHHHHHHHHHHHHHHHHHHHhCcCcC-
Confidence 111 2578899999998432 3344557899888 5688999999999999998887655332
Q ss_pred CCcccCccchhhccccCCCcchhhccccc
Q psy13453 279 AGKVMGGAQAIAGTESSGPADQVLGEIQP 307 (764)
Q Consensus 279 ~~~~~~~~~a~~g~~~~~pd~~~~~~~~~ 307 (764)
+..++.+|+||+++++|+|++|++|.-
T Consensus 445 --~~~~~~~a~~~~~~~~~~~~~~~~~~~ 471 (497)
T 3mc6_A 445 --PSPDGTSALYGVAGSVKTAGVADKLIV 471 (497)
T ss_dssp ---------------------CCTHHHHH
T ss_pred --CCCCCCCccccccccCCChHHHHHHHH
Confidence 234667999999999999999988765
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-19 Score=199.50 Aligned_cols=239 Identities=18% Similarity=0.138 Sum_probs=161.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCccccccCCCCCh----HHHHHHH---HHHhhcccCccccCCch------
Q psy13453 493 GEMPEEGEDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSY----PSIVGDM---LSGAFGLIGFSWLSSPA------ 559 (764)
Q Consensus 493 ~~lP~~g~~~~~il~~l~~~i~~~~~~~~~P~~~~~~~~~~~~----~~~lad~---l~~~lN~n~~~~~~sp~------ 559 (764)
..+|++|.+-+.|--.+.+.-..+++++. +++--|--. ..+++.- +...+.-.++.-+.-|.
T Consensus 39 r~~P~~g~~d~~ie~~l~~la~mdsnn~~-----~~~g~GERE~Rv~s~lv~rrh~~~~HGiGRSGd~~~~QPKAaGssl 113 (501)
T 3hl2_A 39 GKCPENGWDESTLELFLHELAIMDSNNFL-----GNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSL 113 (501)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHTTBGGGCS-----SCCCCSSCCCCCSCHHHHHHTTTCCSCBSCSSCTTCCCTTBHHHHH
T ss_pred CCCCccCCCHHHHHHHHHHHHhhccCCCc-----ccCCcccchHHHHHHHHHhhccCcccCCCCccccccCCCCccchHH
Confidence 36899999977777777766555544332 222111111 1112111 11123333444444442
Q ss_pred -HHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecC
Q psy13453 560 -CTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSD 638 (764)
Q Consensus 560 -~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~ 638 (764)
...-|..+++||+.+ |+|.. +..++++|+|-+++..++++..+..+. ...|+++.
T Consensus 114 l~~ltn~l~ld~L~~~-G~~~~--------~~~flVnGsTgg~lamilaa~r~~rpg---------------~d~VIvpR 169 (501)
T 3hl2_A 114 LNKITNSLVLDIIKLA-GVHTV--------ANCFVVPMATGMSLTLCFLTLRHKRPK---------------AKYIIWPR 169 (501)
T ss_dssp HHHHHHHHHHHHHHHT-TCTTC--------CEEEEESSCHHHHHHHHHHHHHHHCTT---------------CCEEEEEC
T ss_pred HHHHHHHHHHHHHHHc-CCCCC--------CcEEEECcHHHHHHHHHHHHcCcccCC---------------CCEEEEec
Confidence 234577888999998 99975 467889999966666665554432110 12466799
Q ss_pred CcchhHHHHHHhCCCceEEEec---CCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCC-ccccccHHHHHHHHHhcC
Q psy13453 639 QSNSSVEKSAIIGDVPVRQLRS---DDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTG-TCAFDNLEELGPICQEYN 714 (764)
Q Consensus 639 ~aH~Sv~kAa~~lGl~v~~Vp~---d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~-~GaiDpl~eIa~i~~~~g 714 (764)
.+|.|+.||+.++|+..+.|+. ++...||+++|+++|++. |...++++++.-|+. .+.+|||++|+++|++||
T Consensus 170 n~HKSv~kAliL~Gl~Pv~V~p~~d~~~~~id~e~le~aI~e~---ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~g 246 (501)
T 3hl2_A 170 IDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQEL---GPDCILCIHSTTSCFAPRVPDRLEELAVICANYD 246 (501)
T ss_dssp CCCHHHHHHHHHTTCEEEEECEEEETTEEEECHHHHHHHHHHH---CGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHcCCeEEEEeeeecccccCCCHHHHHHHHHhc---CCCcEEEEEecCCCCCCcccccHHHHHHHHHHcC
Confidence 9999999999999999888876 456899999999999986 222344444444443 457799999999999999
Q ss_pred CEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 715 IWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 715 lwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
+|+|||.|||+.+.++++.....-...+||.++.|+||++.+|.+++++
T Consensus 247 IpllVDeAhGah~~~~~~lp~sA~~~GrAD~vVqS~HK~llvpIGG~ii 295 (501)
T 3hl2_A 247 IPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAII 295 (501)
T ss_dssp CCEEEECTTCTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHCCCSSCEEE
T ss_pred CeEEEeCcchhhhhhhhhhHHHHHhcCCCcEEEecccccceeecCceEE
Confidence 9999999999987665442221111236899999999999999998875
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-17 Score=180.25 Aligned_cols=203 Identities=18% Similarity=0.087 Sum_probs=157.8
Q ss_pred CCCCCccccccCCCCChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChH
Q psy13453 519 HWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTAS 598 (764)
Q Consensus 519 ~~~~P~~~~~~~~~~~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgT 598 (764)
...+|.++-+.+++...+..+.+.+...+ . ...+|....+..++.+++++++|.+.. ...++|+|||
T Consensus 8 ~~~~~~~~~~~pgp~~~~~~v~~a~~~~~---~--~~~~~~~~~~~~~~~~~la~~~~~~~~--------~~v~~~~sgt 74 (411)
T 3nnk_A 8 QLNPPSRLLMGPGPINADPRVLRAMSSQL---I--GQYDPAMTHYMNEVMALYRGVFRTENR--------WTMLVDGTSR 74 (411)
T ss_dssp SCCCCCCEEESSSCCCCCHHHHHHHTSCC---C--CTTCHHHHHHHHHHHHHHHHHHTCCCS--------EEEEEESCHH
T ss_pred ccCCccceeecCCCCCCCHHHHHHhhccc---c--ccccHHHHHHHHHHHHHHHHHhCCCCC--------cEEEECCCcH
Confidence 35577777787776655554444443322 1 123677778899999999999998753 2367889999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchh--HHHHHHhCCCceEEEecCCCCcccHHHHHHHHH
Q psy13453 599 EATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSS--VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVK 676 (764)
Q Consensus 599 eANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~S--v~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~ 676 (764)
+++..++.+.. . ++..|+++..+|++ +.+++...|.+++.||++.++.+|+++|+++|+
T Consensus 75 ~al~~~~~~~~----~---------------~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~ 135 (411)
T 3nnk_A 75 AGIEAILVSAI----R---------------PGDKVLVPVFGRFGHLLCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVK 135 (411)
T ss_dssp HHHHHHHHHHC----C---------------TTCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhc----C---------------CCCEEEEecCCchHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHh
Confidence 99988887551 1 12257788899988 888889999999999999999999999999998
Q ss_pred HhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCC
Q psy13453 677 EDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLV 756 (764)
Q Consensus 677 ~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~ 756 (764)
+. .+.+|+++.+++.+|.+.|+++|+++|++||+|+|+|+|++.+....+. ... .+|.++.++|||++.
T Consensus 136 ~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~-----~~~-~~d~~~~s~~K~l~~ 204 (411)
T 3nnk_A 136 RI-----RPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGGNPLET-----DVW-GLDAVSAGMQKCLGG 204 (411)
T ss_dssp HH-----CCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBTTBCCCT-----TTT-TCSEEECCSTTTTCC
T ss_pred hC-----CCeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcccCCcccch-----hcc-CCcEEEecCccccCC
Confidence 63 2558888999999999999999999999999999999998875443221 111 369999999999999
Q ss_pred CcCceeeC
Q psy13453 757 NFDCSAMW 764 (764)
Q Consensus 757 P~~~g~l~ 764 (764)
|.++|+++
T Consensus 205 ~~g~g~~~ 212 (411)
T 3nnk_A 205 PSGTSPIT 212 (411)
T ss_dssp CSSEEEEE
T ss_pred CCceEEEE
Confidence 99998864
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-16 Score=175.49 Aligned_cols=202 Identities=16% Similarity=0.082 Sum_probs=154.2
Q ss_pred CCCCCccccccCCCCChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEE-EeCCh
Q psy13453 519 HWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGI-IQSTA 597 (764)
Q Consensus 519 ~~~~P~~~~~~~~~~~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~Gv-fTsGg 597 (764)
...+|+++.+.+++...+..+.+.+.. . .....++....+..++.+++++++|.+.+ ..+ +|+||
T Consensus 6 ~~~~~~~~~~~p~p~~~~~~v~~a~~~---~--~~~~~~~~~~~~~~~l~~~la~~~g~~~~---------~~~~~~~s~ 71 (416)
T 3isl_A 6 ELCTPLRTIMTPGPVEVDPRVLRVMST---P--VVGQFDPAFTGIMNETMEMLRELFQTKNR---------WAYPIDGTS 71 (416)
T ss_dssp CCCCCCCEECSSSSCCCCHHHHHHTTS---C--CCCTTSHHHHHHHHHHHHHHHHHTTCCCS---------EEEEEESCH
T ss_pred ccCcccceeecCCCcCcCHHHHHHhcc---c--CCCCccHHHHHHHHHHHHHHHHHhCCCCC---------cEEEecCcH
Confidence 345667777776665554444333332 1 12234466788899999999999998753 344 88999
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchh--HHHHHHhCCCceEEEecCCCCcccHHHHHHHH
Q psy13453 598 SEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSS--VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAV 675 (764)
Q Consensus 598 TeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~S--v~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I 675 (764)
|+++..++.+. .. ++..|++++.+|++ +.+++...|.+++.||++.++.+|+++|+++|
T Consensus 72 t~al~~~~~~l----~~---------------~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i 132 (416)
T 3isl_A 72 RAGIEAVLASV----IE---------------PEDDVLIPIYGRFGYLLTEIAERYGANVHMLECEWGTVFDPEDIIREI 132 (416)
T ss_dssp HHHHHHHHHHH----CC---------------TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHh----cC---------------CCCEEEEecCCcccHHHHHHHHhcCCeeEEEecCCCCCCCHHHHHHHH
Confidence 99988877644 11 12257778889988 77889999999999999999999999999999
Q ss_pred HHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCC
Q psy13453 676 KEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLL 755 (764)
Q Consensus 676 ~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~ 755 (764)
++. .+.+|+.+..++.+|.+.|+++|+++|++||+|+|+|++|+.+....+- ... .+|.++.++|||++
T Consensus 133 ~~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~-----~~~-~~d~~~~s~~K~l~ 201 (416)
T 3isl_A 133 KKV-----KPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGCEVKV-----DEW-KIDAAIGGTQKCLS 201 (416)
T ss_dssp HHH-----CCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTTTSCCCT-----TTT-TCSEEECCSSSTTC
T ss_pred hhC-----CCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCccccCCCcch-----hhc-CCCEEEecCccccC
Confidence 853 2458889999999999999999999999999999999999865443321 111 36999999999999
Q ss_pred CCcCceeeC
Q psy13453 756 VNFDCSAMW 764 (764)
Q Consensus 756 ~P~~~g~l~ 764 (764)
.|.++|+++
T Consensus 202 g~~g~g~~~ 210 (416)
T 3isl_A 202 VPSGMAPIT 210 (416)
T ss_dssp CCSSEEEEE
T ss_pred CCCCeEEEE
Confidence 999999864
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=7.9e-17 Score=173.90 Aligned_cols=202 Identities=14% Similarity=0.092 Sum_probs=152.8
Q ss_pred cccccCCCCChHHHHHHHHHHh---hcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHH
Q psy13453 525 FNAYFPTGSSYPSIVGDMLSGA---FGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEAT 601 (764)
Q Consensus 525 ~~~~~~~~~~~~~~lad~l~~~---lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeAN 601 (764)
|+++..+++.++.++..+.... +.+....+..+.....+..++.+++++++|.+++ ..+||+|||+++
T Consensus 3 yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---------~i~~~~g~~~a~ 73 (382)
T 4hvk_A 3 YFDYTSAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGG---------TVVFTSGATEAN 73 (382)
T ss_dssp BCBTTTCCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTE---------EEEEESSHHHHH
T ss_pred eecCCCcCCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcC---------eEEEECCchHHH
Confidence 6677666666665544333322 2222223444556778889999999999998653 589999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHh---CCCceEEEecCCCCcccHHHHHHHHHHh
Q psy13453 602 LVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAII---GDVPVRQLRSDDNGVLRGDALLTAVKED 678 (764)
Q Consensus 602 l~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~---lGl~v~~Vp~d~~g~md~~~Le~~I~~~ 678 (764)
..++.+....... ++..|+++..+|.+...++.. .|++++.||+++++.+|+++|+++|++.
T Consensus 74 ~~~~~~~~~~~~~---------------~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~ 138 (382)
T 4hvk_A 74 NLAIIGYAMRNAR---------------KGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRDD 138 (382)
T ss_dssp HHHHHHHHHHHGG---------------GCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCCTT
T ss_pred HHHHHHhhhhhcC---------------CCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhccC
Confidence 9888876543211 123588899999999887766 5999999999999999999999998653
Q ss_pred hhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCc
Q psy13453 679 LAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNF 758 (764)
Q Consensus 679 ~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~ 758 (764)
+.+|+.+..++.+|.+.|+++|+++|++||+ +|+|+||+.+....+... . .+|.++.++||++ .|.
T Consensus 139 ------~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~~~~~~~~---~---~~d~~~~s~~K~~-g~~ 204 (382)
T 4hvk_A 139 ------TILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQIEVDVEK---I---GADMLTISSNDIY-GPK 204 (382)
T ss_dssp ------EEEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTTBCCCHHH---H---TCSEEEEESGGGT-SCT
T ss_pred ------ceEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCCCCCCchh---c---CCCEEEEeHHHhc-CCC
Confidence 4588899999999999999999999999999 999999987654332111 1 2599999999975 477
Q ss_pred CceeeC
Q psy13453 759 DCSAMW 764 (764)
Q Consensus 759 ~~g~l~ 764 (764)
|+|+++
T Consensus 205 g~g~~~ 210 (382)
T 4hvk_A 205 GVGALW 210 (382)
T ss_dssp TCEEEE
T ss_pred ceEEEE
Confidence 888764
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.6e-17 Score=174.94 Aligned_cols=170 Identities=15% Similarity=0.073 Sum_probs=135.8
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
.++.....+.++.+++++++|.+.+ ....+||+|||+++..++.+.+. ..|+
T Consensus 27 ~~~~~~~~~~~l~~~la~~~g~~~~-------~~~v~~t~g~t~a~~~~~~~~~~---------------------d~vl 78 (353)
T 2yrr_A 27 LDPEVLRVNRAIQERLAALFDPGEG-------ALVAALAGSGSLGMEAGLANLDR---------------------GPVL 78 (353)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCCCTT-------CEEEEESSCHHHHHHHHHHTCSC---------------------CCEE
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCCC-------CceEEEcCCcHHHHHHHHHHhcC---------------------CcEE
Confidence 3567778899999999999998621 13588999999999888764421 1266
Q ss_pred ecCCcchh--HHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhc
Q psy13453 636 TSDQSNSS--VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEY 713 (764)
Q Consensus 636 ~S~~aH~S--v~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~ 713 (764)
+++.+|++ +.+++...|++++.||+++++.+|+++|+++|++. .+.+|+.+..++.+|.+.|+++|+++|++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~i~~l~~~~ 153 (353)
T 2yrr_A 79 VLVNGAFSQRVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKRR-----RYRMVALVHGETSTGVLNPAEAIGALAKEA 153 (353)
T ss_dssp EEECSHHHHHHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHHS-----CCSEEEEESEETTTTEECCHHHHHHHHHHH
T ss_pred EEcCCCchHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHhC-----CCCEEEEEccCCCcceecCHHHHHHHHHHc
Confidence 77778887 45667889999999999989999999999999762 245888899999999999999999999999
Q ss_pred CCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 714 NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 714 glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
|+|+|+|+||+.+....+ ... + .+|.+++++|||++.|.|+|+++
T Consensus 154 ~~~li~D~a~~~~~~~~~-~~~----~-~~d~~~~s~~K~~~~~~g~G~~~ 198 (353)
T 2yrr_A 154 GALFFLDAVTTLGMLPFS-MRA----M-GVDYAFTGSQKCLSAPPGLAPIA 198 (353)
T ss_dssp TCEEEEECTTTTTTSCCC-HHH----H-TCSEEECCTTSTTCCCSSCEEEE
T ss_pred CCeEEEEcCccccccccc-ccc----c-CceEEEecCcccccCCCceEEEE
Confidence 999999999975433221 111 1 25999999999999999998864
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-16 Score=172.10 Aligned_cols=202 Identities=13% Similarity=0.066 Sum_probs=150.4
Q ss_pred cccccCCCCChHHHHHHHHHHhhc--ccC-ccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHH
Q psy13453 525 FNAYFPTGSSYPSIVGDMLSGAFG--LIG-FSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEAT 601 (764)
Q Consensus 525 ~~~~~~~~~~~~~~lad~l~~~lN--~n~-~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeAN 601 (764)
|+++-.+++.++.++..+....-+ .+. ..|..++.......++.+++++++|.+++ ..+||+|||+|+
T Consensus 3 yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~---------~v~~~~g~t~a~ 73 (382)
T 4eb5_A 3 YFDYTSAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGG---------TVVFTSGATEAN 73 (382)
T ss_dssp BCBTTTCCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTE---------EEEEESSHHHHH
T ss_pred eeccCCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCC---------eEEEcCchHHHH
Confidence 666666666666654443333221 111 12444456678889999999999998642 589999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHh---CCCceEEEecCCCCcccHHHHHHHHHHh
Q psy13453 602 LVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAII---GDVPVRQLRSDDNGVLRGDALLTAVKED 678 (764)
Q Consensus 602 l~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~---lGl~v~~Vp~d~~g~md~~~Le~~I~~~ 678 (764)
..++.+.+..+... +..|++++.+|.++..++.. .|++++.||+++++.+|+++|+++|+++
T Consensus 74 ~~~~~~l~~~~~~~---------------gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~ 138 (382)
T 4eb5_A 74 NLAIIGYAMRNARK---------------GKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRDD 138 (382)
T ss_dssp HHHHHHHHHHHGGG---------------CCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCCTT
T ss_pred HHHHHHHHhhccCC---------------CCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhcCC
Confidence 99988776432111 22578899999999888765 6889999999989999999999988642
Q ss_pred hhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCc
Q psy13453 679 LAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNF 758 (764)
Q Consensus 679 ~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~ 758 (764)
+.+|+.+..++.+|.+.|+++|+++|++||+| |+|+||+.+....+ ... . .+|.++.++||++ .|.
T Consensus 139 ------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~~~~~-~~~----~-~~di~~~s~sK~~-g~~ 204 (382)
T 4eb5_A 139 ------TILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQIEVD-VEK----I-GADMLTISSNDIY-GPK 204 (382)
T ss_dssp ------EEEEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBTTBCCC-HHH----H-TCSEEEEETGGGT-CCS
T ss_pred ------CeEEEEeccCCCccccCCHHHHHHHHHHCCCE-EEEcchhcCCcccC-ccc----c-CCCEEEeehHHhc-CCC
Confidence 45888899999999999999999999999999 99999985433221 111 1 3599999999985 577
Q ss_pred CceeeC
Q psy13453 759 DCSAMW 764 (764)
Q Consensus 759 ~~g~l~ 764 (764)
|+|+++
T Consensus 205 g~G~~~ 210 (382)
T 4eb5_A 205 GVGALW 210 (382)
T ss_dssp SCEEEE
T ss_pred ceEEEE
Confidence 888763
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-16 Score=173.20 Aligned_cols=199 Identities=12% Similarity=0.013 Sum_probs=152.0
Q ss_pred CccccccCCCCChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHH
Q psy13453 523 PQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATL 602 (764)
Q Consensus 523 P~~~~~~~~~~~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl 602 (764)
..|+++-..+...+.+. +.+...+.. ..++....+..++.+++++++|.++. ...++|+|||+|+.
T Consensus 20 ~~~l~~~~~~~~~~~v~-~a~~~~~~~-----~~~~~~~~~~~~~~~~la~~~g~~~~--------~~v~~~~g~t~a~~ 85 (386)
T 2dr1_A 20 KYKLFTAGPVACFPEVL-EIMKVQMFS-----HRSKEYRKVHMDTVERLREFLEVEKG--------EVLLVPSSGTGIME 85 (386)
T ss_dssp CSEECCSSSCCCCHHHH-HHTTSCCCC-----TTSHHHHHHHHHHHHHHHHHHTCSSS--------EEEEESSCHHHHHH
T ss_pred cceeecCCCcCCcHHHH-HHHhccccc-----ccCHHHHHHHHHHHHHHHHHhCCCCC--------cEEEEeCChHHHHH
Confidence 45677655555454433 333333321 23455688999999999999998721 24789999999998
Q ss_pred HHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchh--HHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhh
Q psy13453 603 VSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSS--VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLA 680 (764)
Q Consensus 603 ~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~S--v~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~ 680 (764)
.++.+.. . ++..|++++.+|++ +.+++...|.+++.+|++.++.+|+++|+++|++.
T Consensus 86 ~~~~~l~----~---------------~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~-- 144 (386)
T 2dr1_A 86 ASIRNGV----S---------------KGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEPGKAVKPEDLDDALRKN-- 144 (386)
T ss_dssp HHHHHHS----C---------------TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHC--
T ss_pred HHHHHhh----c---------------CCCeEEEEcCCchhHHHHHHHHHhCCceEEEecCCCCCCCHHHHHHHHhcC--
Confidence 8887541 1 12257788889988 88888999999999999988999999999999652
Q ss_pred cCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCc
Q psy13453 681 KGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDC 760 (764)
Q Consensus 681 ~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~ 760 (764)
..+.+|+++..++.+|.+.|+++|+++|++||+|+|+|+||+.+....+ +... .+|.++.++||+++.|.++
T Consensus 145 --~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~-----~~~~-~~di~~~s~sK~~~~~~g~ 216 (386)
T 2dr1_A 145 --PDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADIK-----FDKW-GLDVVFSSSQKAFGVPPGL 216 (386)
T ss_dssp --TTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBCCC-----TTTT-TCSEEEEETTSTTCCCSSC
T ss_pred --CCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccCcccc-----cccc-CCcEEEEeccccccCCCce
Confidence 1356888889999999999999999999999999999999987654221 1212 4699999999999999888
Q ss_pred eeeC
Q psy13453 761 SAMW 764 (764)
Q Consensus 761 g~l~ 764 (764)
|+++
T Consensus 217 G~~~ 220 (386)
T 2dr1_A 217 AIGA 220 (386)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8864
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-16 Score=175.63 Aligned_cols=204 Identities=19% Similarity=0.186 Sum_probs=154.1
Q ss_pred CccccccCCCCChHHHHHHHHHHhhc--cc-C---c-cccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeC
Q psy13453 523 PQFNAYFPTGSSYPSIVGDMLSGAFG--LI-G---F-SWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQS 595 (764)
Q Consensus 523 P~~~~~~~~~~~~~~~lad~l~~~lN--~n-~---~-~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTs 595 (764)
..|+++..+++.++.++.. +...+. .. . . .+..+........++.+++++++|.+.+ ..+||+
T Consensus 23 ~iyld~~~~~~~~~~v~~a-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~---------~v~~~~ 92 (423)
T 3lvm_A 23 PIYLDYSATTPVDPRVAEK-MMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPR---------EIVFTS 92 (423)
T ss_dssp SEECBTTTCCCCCHHHHHH-HTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGG---------GEEEES
T ss_pred CEeecCCCcCCCCHHHHHH-HHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCC---------eEEEeC
Confidence 3577777666555555443 333332 11 1 1 2333445667888899999999998753 589999
Q ss_pred ChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhC---CCceEEEecCCCCcccHHHHH
Q psy13453 596 TASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIG---DVPVRQLRSDDNGVLRGDALL 672 (764)
Q Consensus 596 GgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~l---Gl~v~~Vp~d~~g~md~~~Le 672 (764)
|||+|+..++.+.++.+.+ ++..|+++..+|.+...++..+ |++++.+|+++++.+|+++|+
T Consensus 93 ggt~a~~~a~~~l~~~~~~---------------~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~ 157 (423)
T 3lvm_A 93 GATESDNLAIKGAANFYQK---------------KGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELE 157 (423)
T ss_dssp SHHHHHHHHHHHHHHHHTT---------------TCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHH
T ss_pred ChHHHHHHHHHHHHHhhcc---------------CCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHH
Confidence 9999999999877654321 1235888999999998887554 999999999999999999999
Q ss_pred HHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCc
Q psy13453 673 TAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHK 752 (764)
Q Consensus 673 ~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK 752 (764)
++|++. +.+|+++..++.+|.+.|+++|+++|++||+|+++|+||+++..... +... .+|.++.++||
T Consensus 158 ~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~-----~~~~-~~di~~~s~sK 225 (423)
T 3lvm_A 158 AAMRDD------TILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPID-----LSQL-KVDLMSFSGHK 225 (423)
T ss_dssp HHCCTT------EEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCC-----TTTS-CCSEEEEESTT
T ss_pred HhcCCC------cEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCCcC-----hhhc-CCCEEEechHH
Confidence 998653 55888888999999999999999999999999999999988654322 1111 36999999999
Q ss_pred cCCCCcCceeeC
Q psy13453 753 WLLVNFDCSAMW 764 (764)
Q Consensus 753 ~l~~P~~~g~l~ 764 (764)
+ +.|.++|+++
T Consensus 226 ~-~g~~g~G~~~ 236 (423)
T 3lvm_A 226 I-YGPKGIGALY 236 (423)
T ss_dssp T-TSCSSCEEEE
T ss_pred h-cCCCCeEEEE
Confidence 5 4577888764
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-16 Score=171.93 Aligned_cols=200 Identities=14% Similarity=0.042 Sum_probs=149.8
Q ss_pred CCCccccccCCCCChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHH
Q psy13453 521 QSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEA 600 (764)
Q Consensus 521 ~~P~~~~~~~~~~~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeA 600 (764)
.++.|+++...+..++.++. .+...+.. ..++.......++.+++++++|.++ ...+||+|||++
T Consensus 7 ~~~~yl~~~~~~~~~~~v~~-a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~g~~~---------~~v~~t~g~t~a 71 (392)
T 2z9v_A 7 ADPVITLTAGPVNAYPEVLR-GLGRTVLY-----DYDPAFQLLYEKVVDKAQKAMRLSN---------KPVILHGEPVLG 71 (392)
T ss_dssp SCCSEECSSSCCCCCHHHHH-HTTSCCCC-----TTSHHHHHHHHHHHHHHHHHTTCSS---------CCEEESSCTHHH
T ss_pred CCcceeecCCCcCCCHHHHH-HHhccccc-----cccHHHHHHHHHHHHHHHHHhCCCC---------CEEEEeCCchHH
Confidence 35577777655555554443 33333322 1246667788889999999999864 257999999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhH--HHHHHhCCCceEEEecCCCCcccHHHHHHHHHHh
Q psy13453 601 TLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV--EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKED 678 (764)
Q Consensus 601 Nl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv--~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~ 678 (764)
+..++.+.. . ++..|++++.+|++. .+.+...|.+++.+|+++++.+|+++|+++|++.
T Consensus 72 ~~~~~~~~~----~---------------~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~ 132 (392)
T 2z9v_A 72 LEAAAASLI----S---------------PDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAH 132 (392)
T ss_dssp HHHHHHHHC----C---------------TTCCEEEEESSHHHHHHHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHC
T ss_pred HHHHHHHhc----C---------------CCCEEEEecCCcccHHHHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcC
Confidence 988887651 1 112477788888875 3444557999999999988999999999999752
Q ss_pred hhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCc
Q psy13453 679 LAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNF 758 (764)
Q Consensus 679 ~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~ 758 (764)
..+.+|+.+..++.+|.+.|+++|+++|++||+|+|+|+||+.+....+ +... .+|.++.++|||++.|.
T Consensus 133 ----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~-----~~~~-~~d~~~~s~sK~~~~~~ 202 (392)
T 2z9v_A 133 ----PEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKTH-----PEDC-KADIYVTGPNKCLGAPP 202 (392)
T ss_dssp ----TTCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTBSCC-----GGGG-TCSEEEECSSSTTCCCS
T ss_pred ----CCCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCCcccc-----cccc-cceEEEecCcccccCCC
Confidence 1255888899999999999999999999999999999999986544322 1111 35999999999999999
Q ss_pred CceeeC
Q psy13453 759 DCSAMW 764 (764)
Q Consensus 759 ~~g~l~ 764 (764)
|+|+++
T Consensus 203 g~G~l~ 208 (392)
T 2z9v_A 203 GLTMMG 208 (392)
T ss_dssp CCEEEE
T ss_pred ceeEEE
Confidence 988764
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-16 Score=174.27 Aligned_cols=207 Identities=15% Similarity=0.064 Sum_probs=152.7
Q ss_pred CCCCccccccCCCCChHHHHHHHH---HHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCC
Q psy13453 520 WQSPQFNAYFPTGSSYPSIVGDML---SGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQST 596 (764)
Q Consensus 520 ~~~P~~~~~~~~~~~~~~~lad~l---~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsG 596 (764)
..+..|+++...++.++.++..+. ...+.+....+..+.....+..++.+++++++|.+++ ..+||+|
T Consensus 18 ~~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~---------~v~~~~g 88 (400)
T 3vax_A 18 GSHMTYLDAAATTRVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPD---------ELIFTSG 88 (400)
T ss_dssp ----CCCCCCCCSSSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGG---------GEEEESC
T ss_pred cCCcEEecCCCCCCCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCC---------cEEEeCC
Confidence 344567887766665555443332 2222222223344455677788899999999998753 6899999
Q ss_pred hHHHHHHHHHHHHHHHhhhhccCCCCCccccccCce-EEEecCCcchhHHHHHHh---CCCceEEEecCCCCcccHHHHH
Q psy13453 597 ASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKL-VAYTSDQSNSSVEKSAII---GDVPVRQLRSDDNGVLRGDALL 672 (764)
Q Consensus 597 gTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~-vi~~S~~aH~Sv~kAa~~---lGl~v~~Vp~d~~g~md~~~Le 672 (764)
||+++..++.+.+...... +. .|+++..+|.++..++.. .|.+++.||+++++.+|+++|+
T Consensus 89 ~t~al~~~~~~l~~~~~~~---------------gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~ 153 (400)
T 3vax_A 89 ATESNNIALLGLAPYGERT---------------GRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGPSGRISVEGVM 153 (400)
T ss_dssp HHHHHHHHHHTTHHHHHHH---------------TCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCTTCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHhhccC---------------CCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCCCCCcCHHHHH
Confidence 9999999888765322111 22 578889999998777665 5889999999999999999999
Q ss_pred HHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCc
Q psy13453 673 TAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHK 752 (764)
Q Consensus 673 ~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK 752 (764)
++|++. +.+|+.+..++.+|.+.|+++|+++|++||+|+++|+||+.+.... .+..+ +|.++.++||
T Consensus 154 ~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~-----~~~~~--~d~~~~s~~K 220 (400)
T 3vax_A 154 ERLRPD------TLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPG-----DLTTP--IDMISISGHK 220 (400)
T ss_dssp TTCCTT------EEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGG-----GGGSC--CSEEEEETGG
T ss_pred HhcCCC------ceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCc-----Chhhc--CcEEEEeHHH
Confidence 988643 5588889999999999999999999999999999999998654322 22333 7999999999
Q ss_pred cCCCCcCceeeC
Q psy13453 753 WLLVNFDCSAMW 764 (764)
Q Consensus 753 ~l~~P~~~g~l~ 764 (764)
++ .|.++|+++
T Consensus 221 ~~-g~~g~g~~~ 231 (400)
T 3vax_A 221 IG-APKGVGALV 231 (400)
T ss_dssp GT-SCSSCEEEE
T ss_pred hC-CCCceEEEE
Confidence 54 588888764
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.1e-16 Score=170.15 Aligned_cols=206 Identities=11% Similarity=-0.032 Sum_probs=148.2
Q ss_pred CccccccCCCCChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHH
Q psy13453 523 PQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATL 602 (764)
Q Consensus 523 P~~~~~~~~~~~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl 602 (764)
|+++.+.+++......+.+.+...+.. + .+|.......++.++++++++.... ......+||+|||+++.
T Consensus 4 ~~~~~~~p~p~~~~~~v~~a~~~~~~~----~-~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~v~~~~g~t~al~ 73 (385)
T 2bkw_A 4 SVDTLLIPGPIILSGAVQKALDVPSLG----H-TSPEFVSIFQRVLKNTRAVFKSAAA-----SKSQPFVLAGSGTLGWD 73 (385)
T ss_dssp CCCEECSSSSCCCCHHHHHTTSCCCCC----T-TSHHHHHHHHHHHHHHHHHTTCCGG-----GTCEEEEEESCTTHHHH
T ss_pred ccceeecCCCcCchHHHHHHHhccccc----c-CCHHHHHHHHHHHHHHHHHhCCCCC-----CCCceEEEcCchHHHHH
Confidence 455666666555544444444433321 2 2666666777788999999987421 01236789999999999
Q ss_pred HHHHHHHHHHhhhhccCCCCCccccccCceEEEe-cCCcchhHHHHHHhCCCceEEEec-CCCCcccHHHHHHHHHHhhh
Q psy13453 603 VSILVAKRKMINHWQSKNPSLTENDIRNKLVAYT-SDQSNSSVEKSAIIGDVPVRQLRS-DDNGVLRGDALLTAVKEDLA 680 (764)
Q Consensus 603 ~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~-S~~aH~Sv~kAa~~lGl~v~~Vp~-d~~g~md~~~Le~~I~~~~~ 680 (764)
.++.+..... .. ++-+++. +...|.++.+++...|.+++.||+ ++++.+|+++|+++|++.
T Consensus 74 ~~~~~~~~~~-----~~----------gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~-- 136 (385)
T 2bkw_A 74 IFASNFILSK-----AP----------NKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQN-- 136 (385)
T ss_dssp HHHHHHSCTT-----CS----------CCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHS--
T ss_pred HHHHHHhccC-----CC----------CCeEEEEcCCcchHHHHHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhcC--
Confidence 8887652100 00 1223444 445666766778889999999999 888999999999999762
Q ss_pred cCCCceEEEEeeccCCccccccHHHHHHHHHhc--CCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCc
Q psy13453 681 KGLIPCCLIATLGTTGTCAFDNLEELGPICQEY--NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNF 758 (764)
Q Consensus 681 ~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~--glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~ 758 (764)
.+.+|+.+..++.+|.+.|+++|+++|++| |+|+|+|+||+.+....+ +... .+|.++.++|||++.|.
T Consensus 137 ---~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~-----~~~~-~~d~~~~s~~K~~~~~~ 207 (385)
T 2bkw_A 137 ---SYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFE-----FDEW-GVDFALTASQKAIGAPA 207 (385)
T ss_dssp ---CCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCC-----TTTT-TCSEEEEESSSTTCCCS
T ss_pred ---CCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCcccc-----cccc-CceEEEecCccccccCC
Confidence 244788899999999999999999999999 999999999986543221 1222 36999999999999999
Q ss_pred CceeeC
Q psy13453 759 DCSAMW 764 (764)
Q Consensus 759 ~~g~l~ 764 (764)
|+|+++
T Consensus 208 G~G~~~ 213 (385)
T 2bkw_A 208 GLSISL 213 (385)
T ss_dssp CEEEEE
T ss_pred cceEEE
Confidence 988764
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=6.6e-17 Score=181.44 Aligned_cols=240 Identities=11% Similarity=0.039 Sum_probs=162.4
Q ss_pred cccccccCCcceeeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchh
Q psy13453 8 PKLAYPSETLSLLIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNA 87 (764)
Q Consensus 8 ~~~~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ 87 (764)
|+.+|+.+ .|.|+.||+.++|+++..|+.++.++.++||+++|+++|+++.. +.++++|+|++++..|++|||++
T Consensus 145 ~~viv~r~----aHkSv~kAl~l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~~-~~~~~Vv~t~t~~g~g~~ddl~~ 219 (450)
T 3bc8_A 145 KYIIWPRI----DQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGP-EHILCLHSTTACFAPRVPDRLEE 219 (450)
T ss_dssp CEEEEECC----CCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCG-GGEEEEEEESSCCTTBCCCCHHH
T ss_pred CEEEEECC----cHHHHHHHHHHcCCeeEEEEeeecCccCCcCHHHHHHHHHhcCC-CCEEEEEEECCcCCCceecCHHH
Confidence 44577755 59999999999999996666666578899999999999998752 23334479999999999999999
Q ss_pred hhc-----CCCceeccccc-------------------------------ccc-ceeeeecCCCccccccccccccCCcc
Q psy13453 88 PVS-----NGPLKVGGVLR-------------------------------RVY-SSCLVPRGQKSLRTTVLFHFLFQHWQ 130 (764)
Q Consensus 88 ia~-----~~wlHVDa~l~-------------------------------~~y-~s~ll~rd~~~l~~~~s~~~d~~d~t 130 (764)
+++ ++|+|||++++ .++ |+++++||++.+... .. .|.
T Consensus 220 Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~-~~--~~~--- 293 (450)
T 3bc8_A 220 LAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDI-SK--MYP--- 293 (450)
T ss_dssp HHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHH-HH--HSC---
T ss_pred HHHHHHHCCCeEEEECCCchhhhhhHhHHHHHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHH-HH--Hhh---
Confidence 997 99999999642 112 245666665544322 11 121
Q ss_pred cCCCC-cccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCC---CeEEeCCCCceeE-EEEeeccccccccccc
Q psy13453 131 IPLGR-RFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDD---RFELVCPPSMGLV-CFRLKVRFWDKLDNLF 205 (764)
Q Consensus 131 le~SR-r~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p---~~ell~~P~l~iV-~Fry~P~~~~~~~~~~ 205 (764)
+.. ...+|++|++++.+|++||++++++++++|+++++.|++++ +++++..+...+- ++-.. ...
T Consensus 294 --g~~s~SpsL~l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~--~~~------ 363 (450)
T 3bc8_A 294 --GRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLK--TID------ 363 (450)
T ss_dssp --SCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECT--TTS------
T ss_pred --cCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeecc--ccc------
Confidence 111 34469999999999999999999999999999999999999 9999887754332 22110 000
Q ss_pred cCccCCccHHHHHHHHHHHhcC---cEEE-----------Eece------eCCeeEEEEeccCCCCCHHHHHHHHHHHHH
Q psy13453 206 GTISFGDNDLNKAVYDRIIARK---VIYI-----------VKGS------FQDRLFMRFAICSSQTEESDVQLGWNEIRT 265 (764)
Q Consensus 206 ~~~~~~~d~~n~~L~~~L~~~G---~~~v-----------s~t~------l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~ 265 (764)
...+.| . .+|.-.+...| .-.. .... +-....+= +++.+-.++++++.+++.|++
T Consensus 364 --~~~~~D-~-tkl~i~~~~~g~sG~~v~~~~~~~~~~~~~l~~~gi~~E~~~~~~i~-~~~sig~~~~di~~l~~~L~~ 438 (450)
T 3bc8_A 364 --GHHDKA-V-TQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLN-AAAAIGMKMQDVDLFIKRLDK 438 (450)
T ss_dssp --SSSSCH-H-HHHHHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEE-EECCTTCCHHHHHHHHHHHHH
T ss_pred --ccccCC-C-ceeEEEecCCCCccceeeecccccchhHHHHHHcCCeeecCCCCcEE-EEecCCCCHHHHHHHHHHHHH
Confidence 000111 1 23444444444 2222 0000 01122333 256777899999999999999
Q ss_pred HHHHHHcc
Q psy13453 266 ATEEVLRG 273 (764)
Q Consensus 266 ~~~~i~~~ 273 (764)
+.++..++
T Consensus 439 ~~~~~~~~ 446 (450)
T 3bc8_A 439 CLNIVRKE 446 (450)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 97766543
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=4.5e-16 Score=172.62 Aligned_cols=220 Identities=16% Similarity=0.146 Sum_probs=152.2
Q ss_pred CCccccccCCCCChHHHHHHHHHHhhc---ccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChH
Q psy13453 522 SPQFNAYFPTGSSYPSIVGDMLSGAFG---LIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTAS 598 (764)
Q Consensus 522 ~P~~~~~~~~~~~~~~~lad~l~~~lN---~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgT 598 (764)
...|+++..+++.++.++..+....-+ .....|..++....+..++.+++++++|.+++ ..+||+|||
T Consensus 18 ~~~~Ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~---------~v~~~~g~t 88 (432)
T 3a9z_A 18 RKVYMDYNATTPLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQ---------DIIFTSGGT 88 (432)
T ss_dssp CCEECBTTTCCCCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGG---------GEEEESCHH
T ss_pred CcEEeeCCccCCCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcC---------eEEEeCChH
Confidence 346777766555555554433322211 11223344456778889999999999998653 689999999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCC--CccccccCceEEEecCCcchhHHHHHHh----CCCceEEEecCC-CCcccHHHH
Q psy13453 599 EATLVSILVAKRKMINHWQSKNPS--LTENDIRNKLVAYTSDQSNSSVEKSAII----GDVPVRQLRSDD-NGVLRGDAL 671 (764)
Q Consensus 599 eANl~Al~aAR~~~~~~~~~~~~~--~~~~~~~~~~vi~~S~~aH~Sv~kAa~~----lGl~v~~Vp~d~-~g~md~~~L 671 (764)
+++..++.+..+.+.......|.. +..+.-.....|+++..+|.|+.++... .|.+++.||+++ ++.+|+++|
T Consensus 89 ~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l 168 (432)
T 3a9z_A 89 ESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDI 168 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHH
T ss_pred HHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHH
Confidence 999999988753221100000000 0011111224688999999999777543 689999999985 889999999
Q ss_pred HHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcC----------CEEEEeccccccccccchhhhhhcCCC
Q psy13453 672 LTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYN----------IWLHVDAAYAGSALLLPEYAHLKRGLE 741 (764)
Q Consensus 672 e~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~g----------lwLHVDaA~Gg~~l~~~~~r~~l~gie 741 (764)
+++|++. +.+|+++..++.+|.+.|+++|+++|++|| +|+|+|+||+.+....+ ... +
T Consensus 169 ~~~i~~~------~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~~~-~~~----~- 236 (432)
T 3a9z_A 169 LAAVRPT------TCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVD-VED----L- 236 (432)
T ss_dssp HHTCCTT------EEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSCCC-HHH----H-
T ss_pred HHhccCC------ceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCcccC-hhh----c-
Confidence 9988642 558888999999999999999999999999 99999999987543221 111 1
Q ss_pred cccEEEEcCCccCCCCcCceeeC
Q psy13453 742 YVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 742 ~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
.+|.++.++|||++ |. +|+++
T Consensus 237 ~~d~~~~s~~K~~g-~~-~G~~~ 257 (432)
T 3a9z_A 237 GVDFLTIVGHKFYG-PR-IGALY 257 (432)
T ss_dssp CCSEEEEEGGGTTC-CS-CEEEE
T ss_pred CCCEEEEehhHhcC-Cc-ceEEE
Confidence 35999999999886 66 88764
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.68 E-value=4.7e-16 Score=169.88 Aligned_cols=196 Identities=18% Similarity=0.049 Sum_probs=148.9
Q ss_pred cccccCCCCChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHH
Q psy13453 525 FNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVS 604 (764)
Q Consensus 525 ~~~~~~~~~~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~A 604 (764)
|+.+.......+.+ .+.+...+.. ..++....+..++.+++++++|.+++ ...+||+|||+++..+
T Consensus 36 ~l~~~~~~~~~~~v-~~a~~~~~~~-----~~~~~~~~~~~~~~~~la~~~g~~~~--------~~v~~t~g~t~al~~~ 101 (393)
T 1vjo_A 36 LLLGPGPSNAHPSV-LQAMNVSPVG-----HLDPAFLALMDEIQSLLRYVWQTENP--------LTIAVSGTGTAAMEAT 101 (393)
T ss_dssp EECSSSCCCCCHHH-HHHHSSCCCC-----TTSHHHHHHHHHHHHHHHHHHTCCCS--------CEEEESSCHHHHHHHH
T ss_pred eeccCCCCCCCHHH-HHHHhccccc-----ccCHHHHHHHHHHHHHHHHHhCCCCC--------cEEEEeCchHHHHHHH
Confidence 44444344444443 3444443322 23455678888999999999998642 1579999999999988
Q ss_pred HHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchh--HHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcC
Q psy13453 605 ILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSS--VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKG 682 (764)
Q Consensus 605 l~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~S--v~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G 682 (764)
+.++.. ++..|++++.+|++ +..++...|.+++.+|++.++.+|+++|+++|++.
T Consensus 102 ~~~~~~-------------------~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~---- 158 (393)
T 1vjo_A 102 IANAVE-------------------PGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALETH---- 158 (393)
T ss_dssp HHHHCC-------------------TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHH----
T ss_pred HHhccC-------------------CCCEEEEEcCChhHHHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHhhC----
Confidence 876521 11247778888988 88889999999999999988999999999999863
Q ss_pred CCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCcee
Q psy13453 683 LIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSA 762 (764)
Q Consensus 683 ~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~ 762 (764)
.+.+|+.+..++.+|.+.|+++|+++|++||+|+++|++|+.+....+ +... .+|.++.++||+++.|.++|+
T Consensus 159 -~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~-----~~~~-~~di~~~s~sK~l~~~~~~G~ 231 (393)
T 1vjo_A 159 -RPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIF-----LDAW-GVDLAYSCSQKGLGCSPGASP 231 (393)
T ss_dssp -CCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCC-----TTTT-TCSEEECCSSSTTCSCSSCEE
T ss_pred -CceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCccccCcCCc-----cccc-CccEEEEcCcccccCCCceEE
Confidence 144788889999999999999999999999999999999995432211 2222 469999999999999998888
Q ss_pred eC
Q psy13453 763 MW 764 (764)
Q Consensus 763 l~ 764 (764)
++
T Consensus 232 l~ 233 (393)
T 1vjo_A 232 FT 233 (393)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-15 Score=165.75 Aligned_cols=204 Identities=16% Similarity=0.107 Sum_probs=148.3
Q ss_pred ccccccCCCCChHHHHHHHHHHhhcc---cCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHH
Q psy13453 524 QFNAYFPTGSSYPSIVGDMLSGAFGL---IGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEA 600 (764)
Q Consensus 524 ~~~~~~~~~~~~~~~lad~l~~~lN~---n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeA 600 (764)
.|+++-..+..++.++..+....-+. ....+..+........++.+++++++|.+++ ..++|+|||++
T Consensus 3 ~yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~---------~v~~~~g~t~a 73 (384)
T 1eg5_A 3 VYFDNNATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPS---------EIFFTSCATES 73 (384)
T ss_dssp EECBTTTCCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGG---------GEEEESCHHHH
T ss_pred EEEecCccCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCC---------eEEEECCHHHH
Confidence 46666655555555544333322211 1111222344567788899999999998653 58999999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHH---HhCCCceEEEecCCCCcccHHHHHHHHHH
Q psy13453 601 TLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSA---IIGDVPVRQLRSDDNGVLRGDALLTAVKE 677 (764)
Q Consensus 601 Nl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa---~~lGl~v~~Vp~d~~g~md~~~Le~~I~~ 677 (764)
+..++.+++..... ++..|++++.+|.++..++ ...|.+++.||.++++.+|+++|+++|++
T Consensus 74 ~~~~~~~~~~~~~~---------------~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~ 138 (384)
T 1eg5_A 74 INWILKTVAETFEK---------------RKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE 138 (384)
T ss_dssp HHHHHHHHHHHTTT---------------TCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT
T ss_pred HHHHHHhhhhhccC---------------CCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC
Confidence 99998877642100 1225788899999887766 66899999999998999999999999864
Q ss_pred hhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcC--CEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCC
Q psy13453 678 DLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYN--IWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLL 755 (764)
Q Consensus 678 ~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~g--lwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~ 755 (764)
. +.+|+.+..++.+|.+.|+++|.++|++|| +|+|+|+||+.+.... .+..+ .+|.++.++||+++
T Consensus 139 ~------~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~~~-----~~~~~-~~di~~~s~sK~~g 206 (384)
T 1eg5_A 139 D------TFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPF-----SLEKL-EVDYASFSAHKFHG 206 (384)
T ss_dssp T------EEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCC-----CCTTT-CCSEEEEEGGGGTS
T ss_pred C------CeEEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCCccc-----Cchhc-CCCEEEecHHHhcC
Confidence 2 557888899999999999999999999999 9999999987432211 12222 46999999999855
Q ss_pred CCcCceeeC
Q psy13453 756 VNFDCSAMW 764 (764)
Q Consensus 756 ~P~~~g~l~ 764 (764)
|.|+|+++
T Consensus 207 -~~G~G~~~ 214 (384)
T 1eg5_A 207 -PKGVGITY 214 (384)
T ss_dssp -CTTCEEEE
T ss_pred -CCceEEEE
Confidence 66678763
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.4e-16 Score=170.08 Aligned_cols=201 Identities=12% Similarity=0.011 Sum_probs=149.8
Q ss_pred CCCccccccCCCCChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHH
Q psy13453 521 QSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEA 600 (764)
Q Consensus 521 ~~P~~~~~~~~~~~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeA 600 (764)
..|+++.+.+++...+..+.+.+.... .. ...+....+..++.+++++++|.+.. ...+||+|||++
T Consensus 20 ~~~~~~~~~p~p~~~~~~v~~a~~~~~---~~--~~~~~~~~~~~~l~~~la~~~~~~~~--------~~v~~~~gg~~a 86 (393)
T 3kgw_A 20 SVPTRLLLGPGPSNLAPRVLAAGSLRM---IG--HMQKEMLQIMEEIKQGIQYVFQTRNP--------LTLVVSGSGHCA 86 (393)
T ss_dssp CCCCCEECSSSCCCCCHHHHHHTTCCC---CC--TTSHHHHHHHHHHHHHHHHHHTCCCS--------EEEEESCCTTTH
T ss_pred CCccceeccCCCCCCCHHHHHHhcccc---cC--cccHHHHHHHHHHHHHHHHHhCCCCC--------cEEEEeCCcHHH
Confidence 346777777666655444444333311 11 23466678888999999999998653 247899999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcch--hHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHh
Q psy13453 601 TLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNS--SVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKED 678 (764)
Q Consensus 601 Nl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~--Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~ 678 (764)
+..++.+.. . ++..|+++..+|+ .+..++...|.+++.+|.+.++.+|+++|+++|++.
T Consensus 87 l~~~~~~~~----~---------------~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~ 147 (393)
T 3kgw_A 87 METALFNLL----E---------------PGDSFLTGTNGIWGMRAAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQH 147 (393)
T ss_dssp HHHHHHHHC----C---------------TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHhcC----C---------------CCCEEEEEeCCchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhC
Confidence 988877541 1 1124566677776 347778889999999999989999999999999873
Q ss_pred hhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCc
Q psy13453 679 LAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNF 758 (764)
Q Consensus 679 ~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~ 758 (764)
.+-+|+++..++.+|.+.|+++|+++|++||+|+++|++|+.+...... .. ..+|.+++++||+++.|.
T Consensus 148 -----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~-----~~-~~~d~~~~s~sK~~~~~~ 216 (393)
T 3kgw_A 148 -----KPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPIYM-----DQ-QGIDIMYSSSQKVLNAPP 216 (393)
T ss_dssp -----CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTTSCCCT-----TT-TTCCEEEEESSSTTCCCS
T ss_pred -----CCcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCccccCcccch-----hh-cCCCEEEecCcccccCCC
Confidence 2458888889999999999999999999999999999999844332211 11 135999999999999899
Q ss_pred CceeeC
Q psy13453 759 DCSAMW 764 (764)
Q Consensus 759 ~~g~l~ 764 (764)
++|+++
T Consensus 217 g~g~~~ 222 (393)
T 3kgw_A 217 GISLIS 222 (393)
T ss_dssp SCEEEE
T ss_pred ceeEEE
Confidence 988764
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.2e-16 Score=168.82 Aligned_cols=171 Identities=15% Similarity=0.036 Sum_probs=136.4
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
.++....+..++.+++++++|.+.. ....+||+|||+++. ++.+. .. ++..|+
T Consensus 29 ~~~~~~~~~~~~~~~la~~~~~~~~-------~~~v~~~~g~t~al~-~~~~~----~~---------------~gd~vi 81 (384)
T 3zrp_A 29 TSKEFVEALAYSLKGLRYVMGASKN-------YQPLIIPGGGTSAME-SVTSL----LK---------------PNDKIL 81 (384)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTCCTT-------SEEEEEESCHHHHHH-HGGGG----CC---------------TTCEEE
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCCC-------CcEEEEcCCcHHHHH-HHHhh----cC---------------CCCEEE
Confidence 3566788899999999999998752 125799999999998 76432 11 123567
Q ss_pred ecCCcchh--HHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhc
Q psy13453 636 TSDQSNSS--VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEY 713 (764)
Q Consensus 636 ~S~~aH~S--v~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~ 713 (764)
+++.+|++ +...+...|.+++.||++.++.+|+++|+++|++. .+.+|+.+..++.+|.+.|+++|.++|++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~ 156 (384)
T 3zrp_A 82 VVSNGVFGDRWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKS-----EYKLVALTHVETSTGVREPVKDVINKIRKY 156 (384)
T ss_dssp EECSSHHHHHHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHS-----CEEEEEEESEETTTTEECCHHHHHHHHGGG
T ss_pred EecCCcchHHHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhC-----CCcEEEEeCCCCCCceECcHHHHHHHHHhc
Confidence 77788876 55666778999999999999999999999999873 155888889999999999999999999999
Q ss_pred CCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 714 NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 714 glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
|+|+|+|++|+.+....+ +... .+|.++.++||+++.|.++|+++
T Consensus 157 ~~~li~D~a~~~~~~~~~-----~~~~-~~d~~~~s~~K~~~~~~g~g~~~ 201 (384)
T 3zrp_A 157 VELIVVDGVSSVGAEEVK-----AEEW-NVDVYLTASQKALGSAAGLGLLL 201 (384)
T ss_dssp EEEEEEECTTTTTTSCCC-----TTTT-TCSEEEEETTSTTCCCSSEEEEE
T ss_pred CCEEEEECcccccCcccc-----cccc-CCCEEEecCcccccCCCceEEEE
Confidence 999999999986544322 1111 36999999999999899988864
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.4e-16 Score=169.22 Aligned_cols=170 Identities=15% Similarity=0.090 Sum_probs=134.6
Q ss_pred CchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEe
Q psy13453 557 SPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYT 636 (764)
Q Consensus 557 sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~ 636 (764)
++.......++.+++++++|.+.+ ...++|+|||+++..++.+.. . ++..|++
T Consensus 47 ~~~~~~~~~~l~~~la~~~g~~~~--------~~i~~~~g~t~a~~~~~~~~~----~---------------~gd~vl~ 99 (393)
T 2huf_A 47 HPETLKIMDDIKEGVRYLFQTNNI--------ATFCLSASGHGGMEATLCNLL----E---------------DGDVILI 99 (393)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCCS--------EEEEESSCHHHHHHHHHHHHC----C---------------TTCEEEE
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCC--------cEEEEcCcHHHHHHHHHHHHh----C---------------CCCEEEE
Confidence 456678888999999999998642 157899999999998887651 1 1124777
Q ss_pred cCCcchhH--HHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcC
Q psy13453 637 SDQSNSSV--EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYN 714 (764)
Q Consensus 637 S~~aH~Sv--~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~g 714 (764)
++.+|++. .+.+...|.+++.+|+++++.+|+++|+++|++. .+.+|+++..++.+|.+.|+++|+++|++||
T Consensus 100 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~ 174 (393)
T 2huf_A 100 GHTGHWGDRSADMATRYGADVRVVKSKVGQSLSLDEIRDALLIH-----KPSVLFLTQGDSSTGVLQGLEGVGALCHQHN 174 (393)
T ss_dssp EESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECCCTTHHHHHHHTT
T ss_pred ECCCcchHHHHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhcc-----CCcEEEEEccCCCccccCCHHHHHHHHHHcC
Confidence 88888873 3445668999999999988999999999999763 1448888899999999999999999999999
Q ss_pred CEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 715 IWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 715 lwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
+|+|+|+|++.+....+ +... .+|.++.++|||++.|.|+|+++
T Consensus 175 ~~li~D~a~~~~~~~~~-----~~~~-~~d~~~~s~sK~l~g~~G~G~~~ 218 (393)
T 2huf_A 175 CLLIVDTVASLGGAPMF-----MDRW-EIDAMYTGSQKVLGAPPGITPVS 218 (393)
T ss_dssp CEEEEECTTTBTTBCCC-----TTTT-TCSEEECCSSSTTCCCSSCEEEE
T ss_pred CEEEEEcccccCCCCcc-----hhhc-CccEEEECCCcccccCCCeEEEE
Confidence 99999999876433221 1111 36999999999998899988764
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=8.7e-16 Score=164.80 Aligned_cols=204 Identities=17% Similarity=0.115 Sum_probs=144.4
Q ss_pred cccccCCCCChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHH
Q psy13453 525 FNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVS 604 (764)
Q Consensus 525 ~~~~~~~~~~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~A 604 (764)
||++-..+..++. +.+.+...+.. |..+.....+..++.+|+++++|.+. ...+||+|||+++..+
T Consensus 17 ~l~~~~~~~~~~~-v~~a~~~~~~~----~~~~~g~~~~~~~~~~~l~~~~g~~~---------~~v~~~~g~t~a~~~~ 82 (359)
T 1svv_A 17 SFVNDYSVGMHPK-ILDLMARDNMT----QHAGYGQDSHCAKAARLIGELLERPD---------ADVHFISGGTQTNLIA 82 (359)
T ss_dssp ECSCSCSSCCCHH-HHHHHHHHTTC----CCCSTTCSHHHHHHHHHHHHHHTCTT---------SEEEEESCHHHHHHHH
T ss_pred EecCCCcCCCCHH-HHHHHHHHHhh----ccccccccHHHHHHHHHHHHHhCCCC---------ccEEEeCCchHHHHHH
Confidence 4544333333333 34444444442 33344456788899999999999755 3689999999999998
Q ss_pred HHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHH--HHhCCCceEEEecCCCCcccHHHHHHHHHHhh-hc
Q psy13453 605 ILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKS--AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDL-AK 681 (764)
Q Consensus 605 l~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kA--a~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~-~~ 681 (764)
+.+++. ++..|++++.+|.+...+ +...|.+++.+|.+ ++.+|+++|+++|++.. +.
T Consensus 83 ~~~~~~-------------------~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~d~~~l~~~l~~~~~~~ 142 (359)
T 1svv_A 83 CSLALR-------------------PWEAVIATQLGHISTHETGAIEATGHKVVTAPCP-DGKLRVADIESALHENRSEH 142 (359)
T ss_dssp HHHHCC-------------------TTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT-TSCCCHHHHHHHHHHSCSTT
T ss_pred HHHHhC-------------------CCCEEEEcccchHHHHHHHHHhcCCCeeEEEeCC-CCeecHHHHHHHHHHHHhcc
Confidence 876632 123588899999999884 78889999999986 78999999999998652 23
Q ss_pred CCCceEEEEeeccCCcccccc---HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCC-CcccEEEEcCCccCCCC
Q psy13453 682 GLIPCCLIATLGTTGTCAFDN---LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGL-EYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 682 G~~p~~VvataGTT~~GaiDp---l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gi-e~aDSit~d~HK~l~~P 757 (764)
|..+.+|+.+.. +.+|.+.| +++|+++|++||+|+|+|++|+++.+.........-++ ..+|++++++||+++ |
T Consensus 143 ~~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g~-~ 220 (359)
T 1svv_A 143 MVIPKLVYISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGG-M 220 (359)
T ss_dssp SCEEEEEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTC-S
T ss_pred CCCceEEEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccCCC-C
Confidence 444667777776 57999977 99999999999999999999955422111111000001 246999999999855 8
Q ss_pred cCceeeC
Q psy13453 758 FDCSAMW 764 (764)
Q Consensus 758 ~~~g~l~ 764 (764)
.++|+++
T Consensus 221 ~~~g~l~ 227 (359)
T 1svv_A 221 FGEALII 227 (359)
T ss_dssp SCEEEEE
T ss_pred CceEEEE
Confidence 8888764
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=6.2e-16 Score=167.20 Aligned_cols=169 Identities=14% Similarity=0.093 Sum_probs=136.4
Q ss_pred hHHHHHHHHHHH-HHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEec
Q psy13453 559 ACTELEVLVMNW-LGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTS 637 (764)
Q Consensus 559 ~~t~lE~~v~~~-la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S 637 (764)
.......++.++ +++++|.+ ..+||+|||+|+..++.++.. ++..|+++
T Consensus 50 ~~~~~~~~l~~~~la~~~~~~-----------~v~~~~g~t~a~~~~~~~~~~-------------------~gd~vl~~ 99 (371)
T 2e7j_A 50 IKTPPIHDFIHNQLPKFLGCD-----------VARVTNGAREAKFAVMHSLAK-------------------KDAWVVMD 99 (371)
T ss_dssp ---CCHHHHHHTHHHHHTTSS-----------EEEEESSHHHHHHHHHHHHCC-------------------TTCEEEEE
T ss_pred hHHHHHHHHHHHHHHHHcCCC-----------EEEEeCChHHHHHHHHHHHhC-------------------CCCEEEEc
Confidence 344556678889 99999875 378999999999988876521 12358889
Q ss_pred CCcchhHHHHHHhCCCceEEEe--cCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCC
Q psy13453 638 DQSNSSVEKSAIIGDVPVRQLR--SDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNI 715 (764)
Q Consensus 638 ~~aH~Sv~kAa~~lGl~v~~Vp--~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~gl 715 (764)
+.+|++...++...|++++.+| .++++.+|+++|+++|++..++ ..+.+|+.+..++.+|.+.|+++|+++|++||+
T Consensus 100 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~-~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~ 178 (371)
T 2e7j_A 100 ENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKR-GEVVLALITYPDGNYGNLPDVKKIAKVCSEYDV 178 (371)
T ss_dssp TTCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTT-SCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTC
T ss_pred cCcchHHHHHHHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhccc-CCeEEEEEECCCCCCcccCCHHHHHHHHHHcCC
Confidence 9999999999999999999999 8888999999999999865322 246688899999999999999999999999999
Q ss_pred EEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 716 WLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 716 wLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
|+|+|+||+.+....+ ... . .+|.++.++||+++.|.++|+++
T Consensus 179 ~li~D~a~~~~~~~~~-~~~-~----~~di~~~s~sK~~~~~~~~G~~~ 221 (371)
T 2e7j_A 179 PLLVNGAYAIGRMPVS-LKE-I----GADFIVGSGHKSMAASGPIGVMG 221 (371)
T ss_dssp CEEEECTTTBTTBCCC-HHH-H----TCSEEEEEHHHHSSCCSSCEEEE
T ss_pred eEEEECccccCCCCCC-hhh-c----CCCEEEecCCcCCCCCCCcEEEE
Confidence 9999999998654321 111 1 25899999999999999989874
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.65 E-value=8.3e-16 Score=164.74 Aligned_cols=166 Identities=14% Similarity=0.002 Sum_probs=132.5
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
.++.......++.+++++++|.+++ ..++|+|||+++..++.+... ++..|+
T Consensus 28 ~~~~~~~~~~~l~~~la~~~g~~~~---------~i~~~~g~t~a~~~~~~~~~~-------------------~gd~vl 79 (352)
T 1iug_A 28 RTEAAREVFLKARGLLREAFRTEGE---------VLILTGSGTLAMEALVKNLFA-------------------PGERVL 79 (352)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTCSSE---------EEEEESCHHHHHHHHHHHHCC-------------------TTCEEE
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCCc---------eEEEcCchHHHHHHHHHhccC-------------------CCCeEE
Confidence 3566677888899999999998642 589999999999988876521 112577
Q ss_pred ecCCcchhHH--HHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhc
Q psy13453 636 TSDQSNSSVE--KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEY 713 (764)
Q Consensus 636 ~S~~aH~Sv~--kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~ 713 (764)
+++.+|++.. +.+...|.+++.||++.++.+|+++|++ ..+.+|+.+..++.+|.+.|+++|+++|++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~---------~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~ 150 (352)
T 1iug_A 80 VPVYGKFSERFYEIALEAGLVVERLDYPYGDTPRPEDVAK---------EGYAGLLLVHSETSTGALADLPALARAFKEK 150 (352)
T ss_dssp EEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCTTTSCC---------SSCSEEEEESEETTTTEECCHHHHHHHHHHH
T ss_pred EEeCCchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHhc---------cCCcEEEEEEecCCcceecCHHHHHHHHHhh
Confidence 8888998865 4455689999999999889999998876 1355888899999999999999999999999
Q ss_pred --CCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 714 --NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 714 --glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
|+|+|+|+||+.+....+ +... .+|.++.++|||++.|.++|+++
T Consensus 151 ~~~~~li~D~a~~~~~~~~~-----~~~~-~~d~~~~s~~K~~~~~~g~G~~~ 197 (352)
T 1iug_A 151 NPEGLVGADMVTSLLVGEVA-----LEAM-GVDAAASGSQKGLMCPPGLGFVA 197 (352)
T ss_dssp CTTCEEEEECTTTBTTBCCC-----SGGG-TCSEEEEESSSTTCCCSCEEEEE
T ss_pred CCCCEEEEECCccccCccee-----cccc-CeeEEEecCcccccCCCceeEEE
Confidence 999999999985443222 1111 36999999999999999998864
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.2e-16 Score=164.81 Aligned_cols=195 Identities=14% Similarity=0.006 Sum_probs=143.3
Q ss_pred cccccCCCCChH-HHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHH
Q psy13453 525 FNAYFPTGSSYP-SIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLV 603 (764)
Q Consensus 525 ~~~~~~~~~~~~-~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~ 603 (764)
++.+.+++...+ .++..+.....+........++....+.+++.+++++++|.++. ...++|+|||+++..
T Consensus 5 ~~~~~p~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~--------~~v~~~~g~t~al~~ 76 (362)
T 3ffr_A 5 KIYFTPGPSELYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSN--------YEVLFLASATEIWER 76 (362)
T ss_dssp CEEECSSSCCCCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTT--------EEEEEESCHHHHHHH
T ss_pred ceeccCCCcCCCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCC--------cEEEEeCCchHHHHH
Confidence 455555555443 34433333333333223346788889999999999999998642 367899999999988
Q ss_pred HHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchh--HHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhc
Q psy13453 604 SILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSS--VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAK 681 (764)
Q Consensus 604 Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~S--v~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~ 681 (764)
++.+... + .+++....||+ +...+...|++++.|+.+.++.+|+++|+ +.
T Consensus 77 ~~~~l~~-------------------~--~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~--~~----- 128 (362)
T 3ffr_A 77 IIQNCVE-------------------K--KSFHCVNGSFSKRFYEFAGELGREAYKEEAAFGKGFYPADIT--VP----- 128 (362)
T ss_dssp HHHHHCS-------------------S--EEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCGGGCC--CC-----
T ss_pred HHHhccC-------------------C--cEEEEcCcHHHHHHHHHHHHhCCCeEEEecCCCCCCCHHHHh--cc-----
Confidence 8764310 1 24445556666 34466778999999999988999999998 22
Q ss_pred CCCceEEEEeeccCCccccccHHHHHHHHHhc-CCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCc
Q psy13453 682 GLIPCCLIATLGTTGTCAFDNLEELGPICQEY-NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDC 760 (764)
Q Consensus 682 G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~-glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~ 760 (764)
..+-+|+.+..+|.+|.+.|+++|+++|++| |+|+|+|+||+.+....+ +..+|.++.++|||++.|.|+
T Consensus 129 -~~~~~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~~~~--------~~~~d~~~~s~~K~~~~~~G~ 199 (362)
T 3ffr_A 129 -ADAEIICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYPKFD--------WTKIDSVFFSVQKCFGLPAGL 199 (362)
T ss_dssp -TTCCEEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSSCCC--------TTSCSEEEEETTSTTCCCSCC
T ss_pred -CCccEEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCCcccC--------hhHCcEEEEecccccCCCCce
Confidence 2356888889999999999999999999999 999999999886543221 222699999999999989998
Q ss_pred eeeC
Q psy13453 761 SAMW 764 (764)
Q Consensus 761 g~l~ 764 (764)
|+++
T Consensus 200 g~~~ 203 (362)
T 3ffr_A 200 GVWI 203 (362)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8763
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-15 Score=165.89 Aligned_cols=200 Identities=14% Similarity=0.070 Sum_probs=147.2
Q ss_pred CCccccccCCCCChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHH
Q psy13453 522 SPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEAT 601 (764)
Q Consensus 522 ~P~~~~~~~~~~~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeAN 601 (764)
.|+.+.+.+++...+..+.+.+...+.. .| ++.......++.+++++++|.+++ ...++|+|||+++
T Consensus 16 ~~~~~~~~~~p~~~~~~v~~a~~~~~~~---~~--~~~~~~~~~~l~~~la~~~~~~~~--------~~v~~~~g~t~al 82 (396)
T 2ch1_A 16 IPEKIMMGPGPSNCSKRVLTAMTNTVLS---NF--HAELFRTMDEVKDGLRYIFQTENR--------ATMCVSGSAHAGM 82 (396)
T ss_dssp CCCCBCCSSSSCCCCHHHHHHTTSCCCC---TT--CHHHHHHHHHHHHHHHHHHTCCCS--------CEEEESSCHHHHH
T ss_pred CCcceeecCCCCCCCHHHHHHhcccccc---CC--ChhHHHHHHHHHHHHHHHhCCCCC--------cEEEECCcHHHHH
Confidence 3455555555444444444444433321 12 566667788899999999998652 1478999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHH--HHHHhCCCceEEEecCCCCcccHHHHHHHHHHhh
Q psy13453 602 LVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVE--KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDL 679 (764)
Q Consensus 602 l~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~--kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~ 679 (764)
..++.+.. . ++..|++++.+|.+.. +++...|.+++.||++.++.+|+++|+++|++.
T Consensus 83 ~~~~~~~~----~---------------~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~- 142 (396)
T 2ch1_A 83 EAMLSNLL----E---------------EGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPDRPFSLETLARAIELH- 142 (396)
T ss_dssp HHHHHHHC----C---------------TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHH-
T ss_pred HHHHHHhc----C---------------CCCeEEEEcCCcccHHHHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhC-
Confidence 88877651 1 1124677788888864 577889999999999988999999999999863
Q ss_pred hcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcC
Q psy13453 680 AKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD 759 (764)
Q Consensus 680 ~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~ 759 (764)
.+-+|+.+..++.+|.+.|+++|+++|++||+|+++|+||+.+....+ +... .+|.++.++||+++.|.+
T Consensus 143 ----~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~~~~-----~~~~-~~d~~~~s~~K~~~~~~g 212 (396)
T 2ch1_A 143 ----QPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFY-----MDKW-EIDAVYTGAQKVLGAPPG 212 (396)
T ss_dssp ----CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCC-----TTTT-TCCEEECCCC-CCCCCSS
T ss_pred ----CCCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEccccccCCccc-----hhhc-CcCEEEEcCCccccCCCC
Confidence 144788889999999999999999999999999999999985432211 1222 369999999999999999
Q ss_pred ceeeC
Q psy13453 760 CSAMW 764 (764)
Q Consensus 760 ~g~l~ 764 (764)
+|+++
T Consensus 213 ~g~~~ 217 (396)
T 2ch1_A 213 ITPIS 217 (396)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 98763
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-15 Score=169.51 Aligned_cols=228 Identities=11% Similarity=0.047 Sum_probs=154.4
Q ss_pred ChhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCccccccCCCC---ChHHHHHHHH--HHhhcc-cCccccC
Q psy13453 483 EPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTGS---SYPSIVGDML--SGAFGL-IGFSWLS 556 (764)
Q Consensus 483 ~p~~l~~~l~~~lP~~g~~~~~il~~l~~~i~~~~~~~~~P~~~~~~~~~~---~~~~~lad~l--~~~lN~-n~~~~~~ 556 (764)
-|..++.. +..+| +|.+..++++++......+.. +|..|...+. ..+..+.+++ ...+.. +....+.
T Consensus 30 ~p~~~~~~-~~~lp-~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~g~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~ 102 (438)
T 1wyu_A 30 LPKEILSP-PIDLP-EPLPEWKVLEELRRLAAQNLP-----AHKAFLGGGVRSHHVPPVVQALAARGEFLTAYTPYQPEV 102 (438)
T ss_dssp SCGGGSSC-CCCCC-CCCCHHHHHHHHHHHHHTSCC-----CTTCCCCSSCCCCCCCHHHHHHHTSHHHHHCCSCCSGGG
T ss_pred CcHHHhcC-CCCCC-CCCCHHHHHHHHHHHHhcCcC-----ccccccCCCccCCcCcHHHHHHHhcchhhhcCCCCcchh
Confidence 36667666 77899 899999999999886544321 3444443333 1233333333 222222 1111245
Q ss_pred CchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEe
Q psy13453 557 SPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYT 636 (764)
Q Consensus 557 sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~ 636 (764)
++...+++.++.+++++++|.+.. .+++|+|+|.++..++.+.+. . ++..|++
T Consensus 103 ~~g~~~~~~~~~~~la~~~g~~~~---------~i~~~~g~taa~ea~~~a~~~---~---------------~gd~Viv 155 (438)
T 1wyu_A 103 SQGVLQATFEYQTMIAELAGLEIA---------NASMYDGATALAEGVLLALRE---T---------------GRMGVLV 155 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSSEE---------CSCBSSHHHHHHHHHHHHHHH---H---------------TCCEEEE
T ss_pred hhhHHHHHHHHHHHHHHHhCCCcc---------ceEEeCcHHHHHHHHHHHHhc---C---------------CCCEEEE
Confidence 788899999999999999999752 467999999443222222221 1 1225788
Q ss_pred cCCcchhHHHHH----HhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHh
Q psy13453 637 SDQSNSSVEKSA----IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQE 712 (764)
Q Consensus 637 S~~aH~Sv~kAa----~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~ 712 (764)
++.+|.+...++ +..|++++.||+ ++|.+|+++ |.+ .+.+|+++.. +.+|.++|+++|+++|++
T Consensus 156 ~~~~h~s~~~~~~~~a~~~G~~v~~v~~-~~~~~d~~~----i~~------~t~~v~i~~p-n~tG~~~~l~~i~~la~~ 223 (438)
T 1wyu_A 156 SQGVHPEYRAVLRAYLEAVGAKLLTLPL-EGGRTPLPE----VGE------EVGAVVVQNP-NFLGALEDLGPFAEAAHG 223 (438)
T ss_dssp ETTSCHHHHHHHHHHHHHTTCEEEEECC-BTTBCCCCC----CCT------TEEEEEEESS-CTTSBCCCHHHHHHHHHH
T ss_pred cCccCHhHHHHHHHHHHHCCCEEEEEcC-cCCccCHHH----hCC------CeEEEEEECC-CCCeEEecHHHHHHHHHH
Confidence 999999987654 458999999998 578899876 322 3668888887 999999999999999999
Q ss_pred cCCEEEEecc-ccccccccchhhhhhcCCCcccEEEEcCCc-----cCCCCcCceeeC
Q psy13453 713 YNIWLHVDAA-YAGSALLLPEYAHLKRGLEYVDSFDFNTHK-----WLLVNFDCSAMW 764 (764)
Q Consensus 713 ~glwLHVDaA-~Gg~~l~~~~~r~~l~gie~aDSit~d~HK-----~l~~P~~~g~l~ 764 (764)
||+|+|||+. ++.+.+..+ .. ..+|.+++|.|| |++.| ++|+++
T Consensus 224 ~g~~vivd~d~~a~g~~~~~---~~----~g~D~~~~s~kk~~~~~~~~Gp-~~G~l~ 273 (438)
T 1wyu_A 224 AGALFVAVADPLSLGVLKPP---GA----YGADIAVGDGQSLGLPMGFGGP-HFGFLA 273 (438)
T ss_dssp TTCEEEEECCTTGGGTBCCH---HH----HTCSEEEEECTTTTCCCGGGCS-CCEEEE
T ss_pred cCCEEEEEechhhccCcCCC---cc----CCCCEEEECCcccCCCccCCCC-CeeEEE
Confidence 9999997754 322222222 11 136999999888 67778 888764
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.4e-15 Score=163.87 Aligned_cols=203 Identities=12% Similarity=0.033 Sum_probs=146.7
Q ss_pred ccccccCCCCChHHHHHHHHHHhhcc---c--CccccCCchHHHHHHHHHHHHHHHcCC-CccccCCCCCCCcEEEeCCh
Q psy13453 524 QFNAYFPTGSSYPSIVGDMLSGAFGL---I--GFSWLSSPACTELEVLVMNWLGKALGL-PEEFLNCSPGPGGGIIQSTA 597 (764)
Q Consensus 524 ~~~~~~~~~~~~~~~lad~l~~~lN~---n--~~~~~~sp~~t~lE~~v~~~la~llG~-p~~~~~~~~~~~~GvfTsGg 597 (764)
.||++-..+..++.+. +.+...+.. + ...+..++.......++.+++++++|. ++ ...+||+||
T Consensus 30 i~l~~~~~~~~~~~v~-~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~---------~~v~~~~g~ 99 (420)
T 1t3i_A 30 VYLDNAATSQKPRAVL-EKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSP---------REIVYTRNA 99 (420)
T ss_dssp EECBTTTCCCCCHHHH-HHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCG---------GGEEEESSH
T ss_pred EEecCCccCCCCHHHH-HHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCC---------CeEEEcCCh
Confidence 3565554444444443 334443322 1 112222333456677899999999998 33 368999999
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchh----HHHHHHhCCCceEEEecCCCCcccHHHHHH
Q psy13453 598 SEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSS----VEKSAIIGDVPVRQLRSDDNGVLRGDALLT 673 (764)
Q Consensus 598 TeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~S----v~kAa~~lGl~v~~Vp~d~~g~md~~~Le~ 673 (764)
|+|+..++.+++..... ++..|++++.+|.+ +...+...|++++.||+++++.+|+++|++
T Consensus 100 t~a~~~~~~~~~~~~~~---------------~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~ 164 (420)
T 1t3i_A 100 TEAINLVAYSWGMNNLK---------------AGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKT 164 (420)
T ss_dssp HHHHHHHHHHTHHHHCC---------------TTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHH
T ss_pred HHHHHHHHHHhhhcccC---------------CCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHHHH
Confidence 99999998877532111 12257788888988 566777889999999999899999999999
Q ss_pred HHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCcc
Q psy13453 674 AVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKW 753 (764)
Q Consensus 674 ~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~ 753 (764)
+|++. +.+|+.+..++.+|.+.|+++|+++|++||+|+|+|+||+.+....+ .... + +|.++.++||
T Consensus 165 ~l~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~-~~~~--~---~di~~~s~sK- 231 (420)
T 1t3i_A 165 LLSEK------TKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLD-VQLI--D---CDWLVASGHK- 231 (420)
T ss_dssp HCCTT------EEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCC-HHHH--T---CSEEEEEGGG-
T ss_pred hhCCC------ceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCccCc-hhhc--C---CCEEEEehhh-
Confidence 98643 55888899999999999999999999999999999999987654321 1211 2 5999999999
Q ss_pred CCCCcCceeeC
Q psy13453 754 LLVNFDCSAMW 764 (764)
Q Consensus 754 l~~P~~~g~l~ 764 (764)
++.|.|+|+++
T Consensus 232 ~~~~~g~G~~~ 242 (420)
T 1t3i_A 232 MCAPTGIGFLY 242 (420)
T ss_dssp TTSCTTCEEEE
T ss_pred hcCCCceEEEE
Confidence 45677888763
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.3e-16 Score=168.08 Aligned_cols=171 Identities=16% Similarity=0.137 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
..+..++.+|+++++| ++ ...+||+|||++|..++.+++. ++..|+++..+
T Consensus 42 ~~~~~~l~~~la~~~g-~~---------~~v~~~~~gt~a~~~al~~~~~-------------------~gd~vi~~~~~ 92 (356)
T 1v72_A 42 DELTAQVKRKFCEIFE-RD---------VEVFLVPTGTAANALCLSAMTP-------------------PWGNIYCHPAS 92 (356)
T ss_dssp SHHHHHHHHHHHHHHT-SC---------CEEEEESCHHHHHHHHHHTSCC-------------------TTEEEEECTTS
T ss_pred chHHHHHHHHHHHHhC-CC---------CcEEEeCCccHHHHHHHHHhcC-------------------CCCEEEEcCcc
Confidence 4567888899999998 43 2479999999999888875421 12357788899
Q ss_pred chhHHHH--HHhC--CCceEEEecCCCCcccHHHHHH-HHHHhh-hcCCCceEEEEeeccCCccc---cccHHHHHHHHH
Q psy13453 641 NSSVEKS--AIIG--DVPVRQLRSDDNGVLRGDALLT-AVKEDL-AKGLIPCCLIATLGTTGTCA---FDNLEELGPICQ 711 (764)
Q Consensus 641 H~Sv~kA--a~~l--Gl~v~~Vp~d~~g~md~~~Le~-~I~~~~-~~G~~p~~VvataGTT~~Ga---iDpl~eIa~i~~ 711 (764)
|++..++ +..+ |.+++.||.+ ++.+|+++|++ +|++.. ..+..+.+|+++..+ ++|. .+++++|+++|+
T Consensus 93 ~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~-~tG~~~~~~~l~~i~~~~~ 170 (356)
T 1v72_A 93 HINNDECGAPEFFSNGAKLMTVDGP-AAKLDIVRLRERTREKVGDVHTTQPACVSITQAT-EVGSIYTLDEIEAIGDVCK 170 (356)
T ss_dssp HHHHSSTTHHHHHTTSCEEEECCCG-GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSC-TTSCCCCHHHHHHHHHHHH
T ss_pred chhhhhchHHHHHhCCcEEEEecCC-CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCC-CCCccCCHHHHHHHHHHHH
Confidence 9998877 7776 9999999986 58899999999 886521 223346677777754 5999 789999999999
Q ss_pred hcCCEEEEeccccccccccchhhhhhcCC-CcccEEEEcCCccCCCCcCceee
Q psy13453 712 EYNIWLHVDAAYAGSALLLPEYAHLKRGL-EYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 712 ~~glwLHVDaA~Gg~~l~~~~~r~~l~gi-e~aDSit~d~HK~l~~P~~~g~l 763 (764)
+||+|+|+|++|+.+............++ ..+|.+++++||+ +.|.|+|++
T Consensus 171 ~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g~~~G~g~~ 222 (356)
T 1v72_A 171 SSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN-GVLAAEAIV 222 (356)
T ss_dssp HTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-TCSSCEEEE
T ss_pred HcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-CCcCccEEE
Confidence 99999999999986432211111111122 2579999999999 669888776
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-15 Score=166.77 Aligned_cols=201 Identities=10% Similarity=-0.001 Sum_probs=144.5
Q ss_pred CccccccCCCCChHHHHHHHHHHhhcc----cCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChH
Q psy13453 523 PQFNAYFPTGSSYPSIVGDMLSGAFGL----IGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTAS 598 (764)
Q Consensus 523 P~~~~~~~~~~~~~~~lad~l~~~lN~----n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgT 598 (764)
..|+++-..++.++.+.. .+...+.. ....|..++.......++.+++++++|.+++ ..+||+|+|
T Consensus 27 ~~~ld~~~~~~~~~~v~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~---------~v~~~~g~t 96 (406)
T 3cai_A 27 WVHFDAPAGMLIPDSVAT-TVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPG---------GVVLGADRA 96 (406)
T ss_dssp CEECBGGGCCCCCHHHHH-HHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGG---------GEEEESCHH
T ss_pred eEEEeCCCcCCCCHHHHH-HHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCC---------eEEEeCChH
Confidence 357777655555555433 33333321 1223333444567788899999999998653 689999999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHh----CCCceEEEecC-CCCcccHHHHHH
Q psy13453 599 EATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAII----GDVPVRQLRSD-DNGVLRGDALLT 673 (764)
Q Consensus 599 eANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~----lGl~v~~Vp~d-~~g~md~~~Le~ 673 (764)
+++..++.+.... . .++..|+++..+|.+...++.. .|.+++.||++ ++|.+|+++|++
T Consensus 97 ~al~~~~~~l~~~-~---------------~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~ 160 (406)
T 3cai_A 97 VLLSLLAEASSSR-A---------------GLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWES 160 (406)
T ss_dssp HHHHHHHHHTGGG-G---------------BTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHH
T ss_pred HHHHHHHHHHhhc-c---------------CCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHH
Confidence 9877665532110 1 1123578888999887666544 68999999998 789999999999
Q ss_pred HHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCcc
Q psy13453 674 AVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKW 753 (764)
Q Consensus 674 ~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~ 753 (764)
+|+++ +.+|+.+..++.+|.+.|+++|+++|++||+|+|+|+||+.+....+ ... . + +|.++.++|||
T Consensus 161 ~l~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~-~~~-~-~---~d~~~~s~~K~ 228 (406)
T 3cai_A 161 LISKS------TRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLD-IRE-T-D---ADVVTVNAHAW 228 (406)
T ss_dssp HCCTT------EEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCCCC-HHH-H-C---CSEEEEEGGGG
T ss_pred HhCCC------ceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCCC-chh-c-C---CCEEEeehhhh
Confidence 98543 55888899999999999999999999999999999999986544332 111 1 3 59999999998
Q ss_pred CCCCcCce-ee
Q psy13453 754 LLVNFDCS-AM 763 (764)
Q Consensus 754 l~~P~~~g-~l 763 (764)
++ |. +| ++
T Consensus 229 ~g-~~-~G~~~ 237 (406)
T 3cai_A 229 GG-PP-IGAMV 237 (406)
T ss_dssp TS-CS-CEEEE
T ss_pred cC-CC-cCeEE
Confidence 76 65 77 65
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-15 Score=162.25 Aligned_cols=168 Identities=13% Similarity=0.048 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
....++.+++++++|.+.+ ....+||+|||+++..++.+++. + ++-+++++...|
T Consensus 37 ~~~~~l~~~la~~~g~~~~-------~~~v~~~~g~t~a~~~~~~~~~~---~---------------gd~vi~~~~~~~ 91 (366)
T 1m32_A 37 GVVEQIRQQLTALATASEG-------YTSVLLQGSGSYAVEAVLGSALG---P---------------QDKVLIVSNGAY 91 (366)
T ss_dssp TTHHHHHHHHHHHHCSSSS-------EEEEEEESCHHHHHHHHHHHSCC---T---------------TCCEEEEESSHH
T ss_pred HHHHHHHHHHHHHhCCCCc-------CcEEEEecChHHHHHHHHHHhcC---C---------------CCeEEEEeCCCc
Confidence 5566788899999984321 12589999999999988876531 0 123566777888
Q ss_pred hh-HHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEe
Q psy13453 642 SS-VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVD 720 (764)
Q Consensus 642 ~S-v~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVD 720 (764)
.+ +..++...|++++.+|++.++.+|+++|+++|++.. .+.+|+.+..++.+|.+.|+++|+++|++||+|+|+|
T Consensus 92 ~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D 167 (366)
T 1m32_A 92 GARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADP----TISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVD 167 (366)
T ss_dssp HHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCT----TCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEE
T ss_pred cHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCC----CeEEEEEecccCCcceecCHHHHHHHHHHcCCEEEEE
Confidence 76 567778889999999999889999999999998631 2457778888899999999999999999999999999
Q ss_pred ccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 721 AAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 721 aA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
+||+.+....+ +... .+|.++.++|||++.|.++|+++
T Consensus 168 ea~~~~~~~~~-----~~~~-~~di~~~s~~K~~~~~~g~G~~~ 205 (366)
T 1m32_A 168 AMSSFGGIPMD-----IAAL-HIDYLISSANKCIQGVPGFAFVI 205 (366)
T ss_dssp CTTTTTTSCCC-----TTTT-TCSEEEEESSSTTCCCSSEEEEE
T ss_pred CCccccCcCcc-----cccc-CccEEEecCcccccCCCceEEEE
Confidence 99986543221 1111 36999999999998899988764
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.2e-15 Score=168.18 Aligned_cols=207 Identities=10% Similarity=-0.004 Sum_probs=149.5
Q ss_pred ccccccCCCCChHH---HHHHHHHHhhcccCccccC-CchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHH
Q psy13453 524 QFNAYFPTGSSYPS---IVGDMLSGAFGLIGFSWLS-SPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASE 599 (764)
Q Consensus 524 ~~~~~~~~~~~~~~---~lad~l~~~lN~n~~~~~~-sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTe 599 (764)
.||+....+..+.. .+.+.+....+.+...|.. .+....+.+++.+|+++++|.+++ ..+||+|+|+
T Consensus 69 iyld~~~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~---------~v~~t~g~t~ 139 (465)
T 3e9k_A 69 IYFLGNSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEK---------EIALMNALTV 139 (465)
T ss_dssp EECBTTTSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGG---------GEEECSCHHH
T ss_pred EEecCCccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcC---------CEEEECCHHH
Confidence 47776665554433 3555554444443333332 233445667789999999999763 6889999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchh----HHHHHHhCCCc-----eEEEecCCCCcccHHH
Q psy13453 600 ATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSS----VEKSAIIGDVP-----VRQLRSDDNGVLRGDA 670 (764)
Q Consensus 600 ANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~S----v~kAa~~lGl~-----v~~Vp~d~~g~md~~~ 670 (764)
++..++.+... +. .++..|+++..+|.+ +...++..|+. +..+|.++++.+|+++
T Consensus 140 al~~~~~~~~~---~~-------------~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~d~~~ 203 (465)
T 3e9k_A 140 NLHLLMLSFFK---PT-------------PKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIED 203 (465)
T ss_dssp HHHHHHHHHCC---CC-------------SSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSSCCHHH
T ss_pred HHHHHHHHhcc---cc-------------CCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCccCHHH
Confidence 88777665421 10 123468889999987 44467778886 3455777889999999
Q ss_pred HHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcC
Q psy13453 671 LLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNT 750 (764)
Q Consensus 671 Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~ 750 (764)
|+++|++.. ..+.+|+.+..++.+|.+.|+++|+++|++||+|+|+|+||+.+....+-... .+|.+++++
T Consensus 204 l~~~i~~~~---~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~~------~~D~~~~s~ 274 (465)
T 3e9k_A 204 ILEVIEKEG---DSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDW------GVDFACWCS 274 (465)
T ss_dssp HHHHHHHHG---GGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH------TCCEEEECS
T ss_pred HHHHHHhcC---CCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCchhhc------CCCEEEECc
Confidence 999998542 13568899999999999999999999999999999999999987665432111 359999999
Q ss_pred CccCC-CCcCceeeC
Q psy13453 751 HKWLL-VNFDCSAMW 764 (764)
Q Consensus 751 HK~l~-~P~~~g~l~ 764 (764)
||+++ .|.++|++|
T Consensus 275 ~K~l~~gp~~~g~l~ 289 (465)
T 3e9k_A 275 YKYLNAGAGGIAGAF 289 (465)
T ss_dssp SSTTCCCTTCCCEEE
T ss_pred ccccccCCCceEEEE
Confidence 99994 788888764
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=6.3e-15 Score=160.78 Aligned_cols=203 Identities=13% Similarity=0.007 Sum_probs=145.8
Q ss_pred ccccccCCCCChHHHHHHHHHHhhcc-----cCccccCCchHHHHHHHHHHHHHHHcCC-CccccCCCCCCCcEEEeCCh
Q psy13453 524 QFNAYFPTGSSYPSIVGDMLSGAFGL-----IGFSWLSSPACTELEVLVMNWLGKALGL-PEEFLNCSPGPGGGIIQSTA 597 (764)
Q Consensus 524 ~~~~~~~~~~~~~~~lad~l~~~lN~-----n~~~~~~sp~~t~lE~~v~~~la~llG~-p~~~~~~~~~~~~GvfTsGg 597 (764)
.|+++-..++.++.++ +.+...+.. +...+..+........++.+++++++|. ++ ...+||+||
T Consensus 25 i~l~~~~~~~~~~~v~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~---------~~v~~~~g~ 94 (406)
T 1kmj_A 25 AYLDSAASAQKPSQVI-DAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSA---------EELVFVRGT 94 (406)
T ss_dssp EECCTTTCCCCCHHHH-HHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCG---------GGEEEESSH
T ss_pred EEecCCccCCCCHHHH-HHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCC---------CeEEEeCCh
Confidence 4666665555444443 333333322 1111122223566778899999999998 33 368999999
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHH----HHHHhCCCceEEEecCCCCcccHHHHHH
Q psy13453 598 SEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVE----KSAIIGDVPVRQLRSDDNGVLRGDALLT 673 (764)
Q Consensus 598 TeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~----kAa~~lGl~v~~Vp~d~~g~md~~~Le~ 673 (764)
|+++..++.+++..... ++..|++++.+|++.. ..+...|.+++.+|.++++.+|+++|++
T Consensus 95 t~a~~~~~~~~~~~~~~---------------~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~ 159 (406)
T 1kmj_A 95 TEGINLVANSWGNSNVR---------------AGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPT 159 (406)
T ss_dssp HHHHHHHHHHTHHHHCC---------------TTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHH
T ss_pred hHHHHHHHHHhhhhcCC---------------CCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHH
Confidence 99999998877532111 1225777888887653 3466789999999999889999999999
Q ss_pred HHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCcc
Q psy13453 674 AVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKW 753 (764)
Q Consensus 674 ~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~ 753 (764)
+|++. +.+|+.+..++.+|.+.|+++|+++|++||+|+++|++|+.+....+ ... + .+|.++.++||+
T Consensus 160 ~l~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~~~-~~~----~-~~d~~~~s~~K~ 227 (406)
T 1kmj_A 160 LFDEK------TRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVD-VQA----L-DCDFYVFSGHKL 227 (406)
T ss_dssp HCCTT------EEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCC-HHH----H-TCSEEEEEGGGT
T ss_pred HhccC------CeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCCCCc-ccc----c-CCCEEEEEchhc
Confidence 98643 55888899999999999999999999999999999999987654322 111 1 359999999997
Q ss_pred CCCCcCceeeC
Q psy13453 754 LLVNFDCSAMW 764 (764)
Q Consensus 754 l~~P~~~g~l~ 764 (764)
+ .|.|+|+++
T Consensus 228 ~-g~~G~G~~~ 237 (406)
T 1kmj_A 228 Y-GPTGIGILY 237 (406)
T ss_dssp T-SCTTCEEEE
T ss_pred c-CCCCcEEEE
Confidence 7 577788763
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.3e-15 Score=160.37 Aligned_cols=169 Identities=13% Similarity=0.128 Sum_probs=128.5
Q ss_pred CchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEE-eCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 557 SPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGII-QSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 557 sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~Gvf-TsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
++....+..++.+++++++|.+.+ ...+| |+|||+++..++.+... + ++ .|+
T Consensus 47 ~~~~~~~~~~~~~~la~~~g~~~~--------~~~i~~~~ggt~al~~~~~~~~~---~---------------gd-~vi 99 (376)
T 3f0h_A 47 TTEFSSTMLENEKFMLEYAKAPEG--------SKAVFMTCSSTGSMEAVVMNCFT---K---------------KD-KVL 99 (376)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCTT--------CEEEEESSCHHHHHHHHHHHHCC---T---------------TC-CEE
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCC--------ceEEEEcCChhHHHHHHHHhccC---C---------------CC-eEE
Confidence 566778888999999999999753 23444 89999999888765421 0 01 244
Q ss_pred ecCCcchh--HHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhc
Q psy13453 636 TSDQSNSS--VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEY 713 (764)
Q Consensus 636 ~S~~aH~S--v~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~ 713 (764)
++...+++ +.+.+...|..++.+|++.++.+|+++|++++++ .+.+|+.+..++.+|.+.|+++|+++|++|
T Consensus 100 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~ 173 (376)
T 3f0h_A 100 VIDGGSFGHRFVQLCEIHEIPYVALKLEHGKKLTKEKLYEYDNQ------NFTGLLVNVDETSTAVLYDTMMIGEFCKKN 173 (376)
T ss_dssp EEESSHHHHHHHHHHHHTTCCEEEEECCTTCCCCHHHHHTTTTS------CCCEEEEESEETTTTEECCHHHHHHHHHHT
T ss_pred EEeCChhhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHhhcc------CceEEEEecccCCcceecCHHHHHHHHHHc
Confidence 44443433 2345677899999999998899999999987643 255788888899999999999999999999
Q ss_pred CCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 714 NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 714 glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
|+|+|+|++++.+....+- .. .| +|.++.++||+++.|.|+|+++
T Consensus 174 ~~~li~D~~~~~~~~~~~~-~~--~~---~d~~~~s~~K~l~~~~G~g~~~ 218 (376)
T 3f0h_A 174 NMFFVCDCVSAFLADPFNM-NE--CG---ADVMITGSQKVLACPPGISVIV 218 (376)
T ss_dssp TCEEEEECTTTTTTSCCCH-HH--HT---CSEEEEETTTTTCCCSSCEEEE
T ss_pred CCEEEEEcCccccCccccc-cc--cC---ccEEEecCcccccCCCceEEEE
Confidence 9999999999876543221 11 13 4999999999999888988763
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-14 Score=172.63 Aligned_cols=168 Identities=20% Similarity=0.185 Sum_probs=130.7
Q ss_pred HHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhH
Q psy13453 565 VLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV 644 (764)
Q Consensus 565 ~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv 644 (764)
.+..+.+++++|.+. ..++++|+|++|..++.+... +...|+++..+|.|+
T Consensus 208 ~~~ee~la~l~G~d~----------~i~~~~Gtt~a~~~~i~al~~-------------------~GD~Vlv~~~~h~s~ 258 (755)
T 2vyc_A 208 GESEKYAARVFGADR----------SWSVVVGTSGSNRTIMQACMT-------------------DNDVVVVDRNCHKSI 258 (755)
T ss_dssp HHHHHHHHHHHTCSE----------EEEESSHHHHHHHHHHHHHCC-------------------TTCEEEEESSCCHHH
T ss_pred HHHHHHHHHHhCCCc----------eEEECCcHHHHHHHHHHHhcC-------------------CCCEEEECCCchHHH
Confidence 456678999999864 245677778888888765421 123588999999999
Q ss_pred HHHHHhCCCceEEEecCCC-----Ccc-----cHHHHHHHHHHh----hhcCCCceEEEEeeccCCccccccHHHHHHHH
Q psy13453 645 EKSAIIGDVPVRQLRSDDN-----GVL-----RGDALLTAVKED----LAKGLIPCCLIATLGTTGTCAFDNLEELGPIC 710 (764)
Q Consensus 645 ~kAa~~lGl~v~~Vp~d~~-----g~m-----d~~~Le~~I~~~----~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~ 710 (764)
..++...|..++.++++.+ |.| |+++|+++|++. .++|..|.+|+++.+ |.+|.+.|+++|+++|
T Consensus 259 ~~~~~~~G~~~v~v~~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia 337 (755)
T 2vyc_A 259 EQGLMLTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLL 337 (755)
T ss_dssp HHHHHHHCCEEEEECCCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHH
T ss_pred HHHHHHcCCEEEEEeCCCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHH
Confidence 9999999999999988643 346 999999999863 235667778888886 5799999999999999
Q ss_pred HhcCCEEEEeccccccccccchhhhh--hcCCCcccE------EEEcCCccCCCCcCceee
Q psy13453 711 QEYNIWLHVDAAYAGSALLLPEYAHL--KRGLEYVDS------FDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 711 ~~~glwLHVDaA~Gg~~l~~~~~r~~--l~gie~aDS------it~d~HK~l~~P~~~g~l 763 (764)
++||+|+|||+||++.+.+.+.++.. +.| +.+|. ++.++||+++.|.++|++
T Consensus 338 ~~~~~~livDeA~~~~~~~~~~~~~~~~~~g-~~aD~~~~~~iv~~S~hK~L~g~~~g~~i 397 (755)
T 2vyc_A 338 EKTSDRLHFDEAWYGYARFNPIYADHYAMRG-EPGDHNGPTVFATHSTHKLLNALSQASYI 397 (755)
T ss_dssp TTTCSEEEEECTTCTTGGGCGGGTTSSSSCS-CCCCCSSBEEEEEEETTTSSSCCTTCEEE
T ss_pred HHcCCEEEEECcCchhcccCcccCCcchhcC-CcCCccCCCeEEEECccccccCcCCeeee
Confidence 99999999999999876666544211 122 12687 999999999999888876
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.58 E-value=9.9e-16 Score=172.46 Aligned_cols=162 Identities=15% Similarity=0.003 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
+....++.+++++ +|.+. ..+||+|+|+||..++.++.. ++..|+++..+
T Consensus 56 ~~~~~~~~~~la~-~g~~~----------~v~~~~G~t~a~~~~~~a~~~-------------------~gd~Vlv~~~~ 105 (446)
T 2x3l_A 56 EEVILKSMKQVEK-HSDYD----------GYFLVNGTTSGILSVIQSFSQ-------------------KKGDILMARNV 105 (446)
T ss_dssp SSHHHHHHHHHCS-CTTEE----------EEEESSHHHHHHHHHHHTTTT-------------------SSSCEEECTTC
T ss_pred chHHHHHHHHHHh-cCCCc----------eEEEeCCHHHHHHHHHHHhcC-------------------CCCEEEEecCc
Confidence 3456778889999 98753 368899999999988876511 12258889999
Q ss_pred chhHHHHHHhCCCceEEEec--CCC----CcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcC
Q psy13453 641 NSSVEKSAIIGDVPVRQLRS--DDN----GVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYN 714 (764)
Q Consensus 641 H~Sv~kAa~~lGl~v~~Vp~--d~~----g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~g 714 (764)
|.|+..++...|..++.++. +++ +.+|+++| +.+ .+.+|+++. +|.+|.+.|+++|+++|++||
T Consensus 106 h~s~~~~~~~~G~~~~~v~~~~~~~~~~~~~~d~~~l---~~~------~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~ 175 (446)
T 2x3l_A 106 HKSVLHALDISQQEGHFIETHQSPLTNHYNKVNLSRL---NND------GHKLVVLTY-PNYYGETFNVEEVIKSLHQLN 175 (446)
T ss_dssp CHHHHHHHHHHTCCEEECEEEECTTTSSEEEEEC----------------CCEEEEES-SCTTSCCCCHHHHHHHHHHTT
T ss_pred cHHHHHHHHHcCCeEEEEeCeeccccCcCCCCCHHHH---cCC------CceEEEEEC-CCCCeEecCHHHHHHHHHhcC
Confidence 99999999999999999998 765 78999988 222 244777777 666999999999999999999
Q ss_pred CEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 715 IWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 715 lwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
+|+|+|+||++...+.+. ....... .+|.++.++||+++.+.++|+++
T Consensus 176 ~~livDea~~~~~~f~~~-~~~~~~~-g~Di~~~S~~K~l~~~~g~g~l~ 223 (446)
T 2x3l_A 176 IPVLIDEAHGAHFGLQGF-PDSTLNY-QADYVVQSFHKTLPALTMGSVLY 223 (446)
T ss_dssp CCEEEECTTCTTTTSTTS-CCCGGGG-TCSEEEECHHHHSSSCTTCEEEE
T ss_pred CeEEEcchhhhhhccCCC-CCChHHc-CCCEEEECCccccccccccEEEE
Confidence 999999999984333332 1111111 36999999999999999999874
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3e-14 Score=154.80 Aligned_cols=168 Identities=15% Similarity=0.124 Sum_probs=132.1
Q ss_pred chHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEec
Q psy13453 558 PACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTS 637 (764)
Q Consensus 558 p~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S 637 (764)
+.......++.+.+++++|.+.+ ..+||+|||+++..++.+.+ .. ++..|+++
T Consensus 55 ~~~~~~~~~l~~~la~~~g~~~~---------~v~~~~g~t~a~~~~~~~~~---~~---------------~gd~vl~~ 107 (390)
T 1elu_A 55 QHIQQLIAQLRQALAETFNVDPN---------TITITDNVTTGCDIVLWGLD---WH---------------QGDEILLT 107 (390)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCGG---------GEEEESSHHHHHHHHHHHSC---CC---------------TTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCHH---------HEEEeCChHHHHHHHHhCCC---CC---------------CCCEEEEe
Confidence 33346677888999999998653 58999999999988877552 00 12257788
Q ss_pred CCcchhHHHH----HHhCCCceEEEecC--CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHH
Q psy13453 638 DQSNSSVEKS----AIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQ 711 (764)
Q Consensus 638 ~~aH~Sv~kA----a~~lGl~v~~Vp~d--~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~ 711 (764)
..+|.+...+ ++..|.+++.+|.+ +++.+|+++|+++|++. +.+|+.+..++.+|.+.|+++|+++|+
T Consensus 108 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~~~~i~~l~~ 181 (390)
T 1elu_A 108 DCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPK------TRLVILSHLLWNTGQVLPLAEIMAVCR 181 (390)
T ss_dssp TTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTT------EEEEEEESBCTTTCCBCCHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCCC------ceEEEEeccccCCceecCHHHHHHHHh
Confidence 8899886543 56779999999987 68899999999988642 458888999999999999999999999
Q ss_pred ----hcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 712 ----EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 712 ----~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
+||+|+|+|+||+.+....+ +.. ..+|.++.++|||++.|.++|+++
T Consensus 182 ~~~~~~~~~li~Dea~~~g~~~~~-----~~~-~~~d~~~~s~~K~~~~~~g~G~~~ 232 (390)
T 1elu_A 182 RHQGNYPVRVLVDGAQSAGSLPLD-----FSR-LEVDYYAFTGHKWFAGPAGVGGLY 232 (390)
T ss_dssp HCCSSSCCEEEEECTTTBTTBCCC-----TTT-SCCSEEEEESSSTTCCCTTCEEEE
T ss_pred hhhhhcCcEEEEEcccccCCcCCC-----hhh-cCCCEEEccccccccCCCceEEEE
Confidence 99999999999986533221 111 146999999999999999999864
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.6e-14 Score=159.95 Aligned_cols=215 Identities=9% Similarity=0.056 Sum_probs=151.1
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecC---CCCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccCchhhhc-----
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGL---PDSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQSLNAPVS----- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpv---d~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDpi~~ia~----- 90 (764)
.|+|+.|+++.+|++. +.||+ ++++++|+++|+++|++....+ .+++ |.++|++++|.+||+++|++
T Consensus 185 ~h~s~~~~~~~~G~~~---~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~-~~~~vv~~~~nn~tG~i~~l~~I~~la~~~ 260 (456)
T 2z67_A 185 SHKSPIKAVSFVGMNM---RLVETVLDGDRVYVPVEDIENAIKKEIELG-NRPCVLSTLTFFPPRNSDDIVEIAKICENY 260 (456)
T ss_dssp CCHHHHHHHHHTTCEE---EEECCEEETTEEECCHHHHHHHHHHHHHTT-CCEEEEEESSCCTTBCCCCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHcCCCc---eEEEEeccCCCCCcCHHHHHHHHHHHhhCC-CeEEEEEeCCCCCCCCcCCHHHHHHHHHHc
Confidence 6999999999999988 77776 7889999999999994332223 3565 69999999999999999887
Q ss_pred CCCceeccccc-------------------------cc-----c-ceeeeecCCCccccccccccccCCcccCCCC-ccc
Q psy13453 91 NGPLKVGGVLR-------------------------RV-----Y-SSCLVPRGQKSLRTTVLFHFLFQHWQIPLGR-RFR 138 (764)
Q Consensus 91 ~~wlHVDa~l~-------------------------~~-----y-~s~ll~rd~~~l~~~~s~~~d~~d~tle~SR-r~~ 138 (764)
++|+|||++.. ++ + +++++.|+++.+.. + . ....++| ...
T Consensus 261 g~~v~vD~A~~~~~~g~~~~~~~~~~~~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~-l--~-----~~~~g~~~~~~ 332 (456)
T 2z67_A 261 DIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKE-I--S-----LSYPGRASATP 332 (456)
T ss_dssp TCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHH-H--H-----TTSCSCBCSHH
T ss_pred CCcEEEECcchHHHHHhhHHHHHhhCCCCCEEEEcCCCCcCCCCCeEEEEEcCHHHHhh-c--C-----cCCCCCCCCCH
Confidence 99999995321 11 1 13444444322211 0 0 1112333 233
Q ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCC---CeEEeCCCCceeEEEEeeccccccccccccCccCCccHH
Q psy13453 139 ALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDD---RFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDL 215 (764)
Q Consensus 139 ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p---~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~ 215 (764)
++++|+++..+|.+||.+++++..++++++.+.|++.+ ++.++ +|+ ++|+|++..+ +.
T Consensus 333 ~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~-~~~-~~v~~~~~~~--------------~~--- 393 (456)
T 2z67_A 333 VVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFL-DVE-SPIASCISVN--------------SD--- 393 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBC-CCC-CSSEEEEECS--------------SC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCEec-CCC-CeEEEEEecc--------------cH---
Confidence 78999999999999999999999999999999999986 76654 455 9999987311 11
Q ss_pred HHHHHHHHHhcCcE--EEE-------ece--eCCeeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 216 NKAVYDRIIARKVI--YIV-------KGS--FQDRLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 216 n~~L~~~L~~~G~~--~vs-------~t~--l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
..++.++|.++|.. -+. ... .....++|++ ....+++++++.+++.|+++
T Consensus 394 ~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~~~~~~vr~s-~~~~~t~eeid~~l~~L~~~ 454 (456)
T 2z67_A 394 PVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMN-AAIGVRTEDIVNSVSKLEKI 454 (456)
T ss_dssp HHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEE-CCTTCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCcceEEeecCccccccccccCcchhhhh-hhcCCCHHHHHHHHHHHHHH
Confidence 34677778887741 111 000 1112468875 44567899999999999764
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=5.2e-14 Score=153.58 Aligned_cols=193 Identities=9% Similarity=0.010 Sum_probs=140.1
Q ss_pred HHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhcc
Q psy13453 539 VGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQS 618 (764)
Q Consensus 539 lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~ 618 (764)
+.+.+...++.....|...+...++++.+.+|+.+.+|++.+ ....+||+|||+++..++.+...
T Consensus 48 v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~-------~~~v~~~~g~~~a~~~~~~~~~~-------- 112 (388)
T 1j32_A 48 IVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYG-------ADNILVTNGGKQSIFNLMLAMIE-------- 112 (388)
T ss_dssp HHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCC-------GGGEEEESHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCC-------hhhEEEcCCHHHHHHHHHHHhcC--------
Confidence 334444444333334555556788999999999999887432 13689999999999888876521
Q ss_pred CCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCC--CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCC
Q psy13453 619 KNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTG 696 (764)
Q Consensus 619 ~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~--~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~ 696 (764)
++..|++++.+|.++..+++..|.+++.+|.+. ++.+|+++|+++|++. +-+|+.+..++.
T Consensus 113 -----------~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~np 175 (388)
T 1j32_A 113 -----------PGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPK------TKLLVFNTPSNP 175 (388)
T ss_dssp -----------TTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTT------EEEEEEESSCTT
T ss_pred -----------CCCEEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCcC------ceEEEEeCCCCC
Confidence 112578888999999999999999999999874 5789999999998642 447777888899
Q ss_pred cccc---ccHHHHHHHHHhcCCEEEEeccccccccccc---hhhhhhcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 697 TCAF---DNLEELGPICQEYNIWLHVDAAYAGSALLLP---EYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 697 ~Gai---Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~---~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
+|.+ +++++|+++|++||+|+|+|.+|+.+..-.. .......+....|.+..++||+++.| +.+|++
T Consensus 176 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~ 249 (388)
T 1j32_A 176 TGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFL 249 (388)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEE
T ss_pred CCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcccceEEE
Confidence 9998 6799999999999999999999988543111 11111000123589999999998644 236765
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-13 Score=150.67 Aligned_cols=163 Identities=15% Similarity=0.020 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
.....++.+++++++|.+. .+++++||++|+.++.+.. . ++..|+++...
T Consensus 108 ~~~~~~l~~~la~~~g~~~-----------~i~~~sGs~a~~~al~~l~----~---------------~gd~vl~~~~~ 157 (427)
T 2w8t_A 108 FHDHMEVEQALRDFYGTTG-----------AIVFSTGYMANLGIISTLA----G---------------KGEYVILDADS 157 (427)
T ss_dssp CHHHHHHHHHHHHHHTCSE-----------EEEESCHHHHHHHHHHHHS----C---------------TTCEEEEETTC
T ss_pred cHHHHHHHHHHHHHhCCCc-----------eEEecCcHHHHHHHHHHhc----C---------------CCCEEEECCcc
Confidence 3566677788888888753 5788889999988776531 1 12357889999
Q ss_pred chhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEe
Q psy13453 641 NSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVD 720 (764)
Q Consensus 641 H~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVD 720 (764)
|.++..+++..|.+++.+|. +|+++|+++|++... ..+.+|+.+...+.+|.+.|+++|+++|++||+||++|
T Consensus 158 h~~~~~~~~~~g~~~~~~~~-----~d~~~le~~l~~~~~--~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~D 230 (427)
T 2w8t_A 158 HASIYDGCQQGNAEIVRFRH-----NSVEDLDKRLGRLPK--EPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVD 230 (427)
T ss_dssp CHHHHHHHHHSCSEEEEECT-----TCHHHHHHHHHTSCS--SSCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEE
T ss_pred cHHHHHHHHHcCCeeEEeCC-----CCHHHHHHHHHhccC--CCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEE
Confidence 99999999999998888773 689999999976321 14667777888889999999999999999999999999
Q ss_pred ccccccccccchhhhh--hcCC-CcccEEEEcCCccCCCCcCceee
Q psy13453 721 AAYAGSALLLPEYAHL--KRGL-EYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 721 aA~Gg~~l~~~~~r~~--l~gi-e~aDSit~d~HK~l~~P~~~g~l 763 (764)
.||+++.+. ++.+.. .-++ ..+|.+..++||+++.| + |++
T Consensus 231 ea~~~~~~~-~~g~~~~~~~~~~~~~di~~~s~sK~~g~~-g-G~v 273 (427)
T 2w8t_A 231 EAHSMGFFG-PNGRGVYEAQGLEGQIDFVVGTFSKSVGTV-G-GFV 273 (427)
T ss_dssp CTTTTTTSS-TTSCCHHHHTTCTTCCSEEEEESSSTTCSC-C-EEE
T ss_pred CCccccccC-CCCCchHhhcCCCcCCcEEEecchhhhccC-C-CEE
Confidence 999986543 111111 1232 25699999999999843 4 554
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.2e-14 Score=151.64 Aligned_cols=159 Identities=13% Similarity=0.086 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchh
Q psy13453 564 EVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSS 643 (764)
Q Consensus 564 E~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~S 643 (764)
..++.+.+++++|.+ ..+||+|||+|+..++.+++.. . .++..|+++..+|.+
T Consensus 34 ~~~l~~~la~~~~~~-----------~v~~~~ggt~al~~~~~~~~~~-~---------------~~gd~Vl~~~~~~~~ 86 (375)
T 2fnu_A 34 SLLFEEALCEFLGVK-----------HALVFNSATSALLTLYRNFSEF-S---------------ADRNEIITTPISFVA 86 (375)
T ss_dssp HHHHHHHHHHHHTCS-----------EEEEESCHHHHHHHHHHHSSCC-C---------------TTSCEEEECSSSCTH
T ss_pred HHHHHHHHHHHhCCC-----------eEEEeCCHHHHHHHHHHHhccc-C---------------CCCCEEEECCCccHh
Confidence 345666778888864 3789999999998888765210 0 112358889999999
Q ss_pred HHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccc
Q psy13453 644 VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAY 723 (764)
Q Consensus 644 v~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~ 723 (764)
...++...|++++.+|+++++.+|+++|+++|+++ +-+|+.+.. +|.+.|+++|+++|++||+|+|+|+||
T Consensus 87 ~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~------~~~v~~~~~---tG~~~~l~~i~~l~~~~~~~li~D~a~ 157 (375)
T 2fnu_A 87 TANMLLESGYTPVFAGIKNDGNIDELALEKLINER------TKAIVSVDY---AGKSVEVESVQKLCKKHSLSFLSDSSH 157 (375)
T ss_dssp HHHHHHHTTCEEEECCBCTTSSBCGGGSGGGCCTT------EEEEEEECG---GGCCCCHHHHHHHHHHHTCEEEEECTT
T ss_pred HHHHHHHCCCEEEEeccCCCCCCCHHHHHhhcCcC------ceEEEEeCC---cCCccCHHHHHHHHHHcCCEEEEECcc
Confidence 99999999999999999988899999999888543 335555544 899999999999999999999999999
Q ss_pred cccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 724 AGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 724 Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
+.+..... + .+..+..++..++++||+++ | |+|.+
T Consensus 158 ~~~~~~~~--~-~~~~~~~i~~~s~s~~K~~~-~-g~g~~ 192 (375)
T 2fnu_A 158 ALGSEYQN--K-KVGGFALASVFSFHAIKPIT-T-AEGGA 192 (375)
T ss_dssp CTTCEETT--E-ETTSSSSEEEEECCTTSSSC-C-SSCEE
T ss_pred ccCCeECC--e-eccccCCeEEEeCCCCCCcc-c-cCceE
Confidence 87654321 1 12222246788889999985 5 67765
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-13 Score=151.10 Aligned_cols=163 Identities=18% Similarity=0.125 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
....++.+++++++|.++ ...+||+|||+++..++.+++..... +.. ++-+|+++..+|
T Consensus 71 ~~~~~l~~~la~~~g~~~---------~~v~~~~g~t~al~~al~~~~~~~~~--~~~----------gd~vii~~~~~~ 129 (416)
T 1qz9_A 71 DLSERLGNRLATLIGARD---------GEVVVTDTTSINLFKVLSAALRVQAT--RSP----------ERRVIVTETSNF 129 (416)
T ss_dssp GHHHHHHHHHHTTTTCCT---------TSEEECSCHHHHHHHHHHHHHHHHHH--HST----------TCCEEEEETTSC
T ss_pred HHHHHHHHHHHHHcCCCc---------ccEEEeCChhHHHHHHHHhhcccccc--cCC----------CCcEEEEcCCCC
Confidence 455678899999999864 25789999999987788776532100 000 122577888899
Q ss_pred hhHHHHHH----hC--CCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCC
Q psy13453 642 SSVEKSAI----IG--DVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNI 715 (764)
Q Consensus 642 ~Sv~kAa~----~l--Gl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~gl 715 (764)
.+...++. .. |.+++.||. +++|+++|++ .+.+|+.+..++.+|.+.|+++|+++|++||+
T Consensus 130 ~~~~~~~~~~~~~~~~g~~~~~v~~-------~~~l~~~i~~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~ 196 (416)
T 1qz9_A 130 PTDLYIAEGLADMLQQGYTLRLVDS-------PEELPQAIDQ------DTAVVMLTHVNYKTGYMHDMQALTALSHECGA 196 (416)
T ss_dssp HHHHHHHHHHHHHHCSSCEEEEESS-------GGGHHHHCST------TEEEEEEESBCTTTCBBCCHHHHHHHHHHHTC
T ss_pred CchHHHHHHHHHHhcCCceEEEeCc-------HHHHHHHhCC------CceEEEEeccccCcccccCHHHHHHHHHHcCC
Confidence 98766543 23 888888886 6778887753 25688999999999999999999999999999
Q ss_pred EEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCc-eeeC
Q psy13453 716 WLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDC-SAMW 764 (764)
Q Consensus 716 wLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~-g~l~ 764 (764)
|+|+|+||+.+....+ ... . .+|.+++++||+++.+.++ |+++
T Consensus 197 ~li~D~a~~~g~~~~~-~~~-~----~~d~~~~s~~K~l~~g~~~~g~l~ 240 (416)
T 1qz9_A 197 LAIWDLAHSAGAVPVD-LHQ-A----GADYAIGCTYKYLNGGPGSQAFVW 240 (416)
T ss_dssp EEEEECTTTTTTSCCC-HHH-H----TCSEEEECSSSTTCCCTTCCCEEE
T ss_pred EEEEEccccccCcCCC-hhh-c----CCCEEEecCcccCCCCCCCeEEEE
Confidence 9999999986544322 111 1 2599999999998877787 8763
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.4e-13 Score=147.88 Aligned_cols=192 Identities=7% Similarity=-0.035 Sum_probs=138.8
Q ss_pred HHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhcc
Q psy13453 539 VGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQS 618 (764)
Q Consensus 539 lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~ 618 (764)
+.+.+...+......|... ..++++.+.+|+++.+|++.+ ....+||+|||+++..++.+.. .
T Consensus 45 v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~-------~~~i~~~~g~~~a~~~~~~~l~----~---- 107 (391)
T 3dzz_A 45 IMASMEEKLKVAAFGYESV--PAEYYKAVADWEEIEHRARPK-------EDWCVFASGVVPAISAMVRQFT----S---- 107 (391)
T ss_dssp HHHHHHHHHTTCCCCCBCC--CHHHHHHHHHHHHHHHSCCCC-------GGGEEEESCHHHHHHHHHHHHS----C----
T ss_pred HHHHHHHHHhcCcCCCCCC--CHHHHHHHHHHHHHHhCCCCC-------HHHEEECCCHHHHHHHHHHHhC----C----
Confidence 3344444454433333322 678999999999999995432 1468899999999988877541 1
Q ss_pred CCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecC---CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccC
Q psy13453 619 KNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSD---DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTT 695 (764)
Q Consensus 619 ~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d---~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT 695 (764)
++..|+++..+|.++..++...|.+++.+|.+ .++.+|+++|+++|++. .+-+|+.+..++
T Consensus 108 -----------~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~-----~~~~v~i~~p~n 171 (391)
T 3dzz_A 108 -----------PGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATP-----SVRMMVFCNPHN 171 (391)
T ss_dssp -----------TTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTST-----TEEEEEEESSBT
T ss_pred -----------CCCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhcc-----CceEEEEECCCC
Confidence 12258889999999999999999999999985 23459999999999631 244777788899
Q ss_pred Ccccc---ccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhc-CCCccc--EEEEcCCccCC-CCcCceee
Q psy13453 696 GTCAF---DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKR-GLEYVD--SFDFNTHKWLL-VNFDCSAM 763 (764)
Q Consensus 696 ~~Gai---Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~-gie~aD--Sit~d~HK~l~-~P~~~g~l 763 (764)
.+|.+ +++++|+++|++||+|+|+|.+|+++............ +.+..| .+..++||+++ ....+|++
T Consensus 172 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~ 246 (391)
T 3dzz_A 172 PIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACA 246 (391)
T ss_dssp TTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEE
T ss_pred CCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEE
Confidence 99999 99999999999999999999999875533211111111 111246 88999999986 44556654
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-13 Score=148.74 Aligned_cols=193 Identities=15% Similarity=0.046 Sum_probs=140.3
Q ss_pred HHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCc-EEEeCChHHHHHHHHHHHHHHHhhhhc
Q psy13453 539 VGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGG-GIIQSTASEATLVSILVAKRKMINHWQ 617 (764)
Q Consensus 539 lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~-GvfTsGgTeANl~Al~aAR~~~~~~~~ 617 (764)
+.+.+...++.....|.......++++.+.+|+.+.+|++.+ ... .++|+|||+++..++.+.. .
T Consensus 44 v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~-------~~~~v~~~~g~~~a~~~~~~~~~----~--- 109 (389)
T 1gd9_A 44 IKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEAD-------PKTEIMVLLGANQAFLMGLSAFL----K--- 109 (389)
T ss_dssp HHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCC-------TTTSEEEESSTTHHHHHHHTTTC----C---
T ss_pred HHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCC-------CCCeEEEcCChHHHHHHHHHHhC----C---
Confidence 334444444333334544456788999999999998886421 135 8999999999988876431 0
Q ss_pred cCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCC--CCcccHHHHHHHHHHhhhcCCCceEEEEeeccC
Q psy13453 618 SKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTT 695 (764)
Q Consensus 618 ~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~--~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT 695 (764)
++..|++++.+|.++..+++..|.+++.+|.++ ++.+|+++|+++++++ +-+|+.+..++
T Consensus 110 ------------~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~~~n 171 (389)
T 1gd9_A 110 ------------DGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDK------TRALIINSPCN 171 (389)
T ss_dssp ------------TTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTT------EEEEEEESSCT
T ss_pred ------------CCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHhcCcC------ceEEEEECCCC
Confidence 123578888999999999999999999999975 4679999999998642 34667778888
Q ss_pred Cccccc---cHHHHHHHHHhcCCEEEEeccccccccccchhh--hhhcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 696 GTCAFD---NLEELGPICQEYNIWLHVDAAYAGSALLLPEYA--HLKRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 696 ~~GaiD---pl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r--~~l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
.+|.+- ++++|+++|++||+|+++|.+|+++..-..... ..+.+....|.+..++||+++.| +.+|++
T Consensus 172 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~ 245 (389)
T 1gd9_A 172 PTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFV 245 (389)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEE
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccceEEE
Confidence 899885 699999999999999999999998654211011 11223445789999999998744 335665
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.4e-14 Score=153.71 Aligned_cols=163 Identities=15% Similarity=0.038 Sum_probs=120.2
Q ss_pred ccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceE
Q psy13453 554 WLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633 (764)
Q Consensus 554 ~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~v 633 (764)
|..++...++|+ .+++++|.+ ..+||+|||+||..++.+++. .++..
T Consensus 32 ~~~~~~~~~l~~----~la~~~~~~-----------~~i~~~sgt~al~~~l~~l~~------------------~~gd~ 78 (373)
T 3frk_A 32 FILGDEDKKFEQ----EFADYCNVN-----------YCIGCGNGLDALHLILKGYDI------------------GFGDE 78 (373)
T ss_dssp CSSSHHHHHHHH----HHHHHHTSS-----------EEEEESCHHHHHHHHHHHTTC------------------CTTCE
T ss_pred ccCCchHHHHHH----HHHHHhCCC-----------eEEEeCCHHHHHHHHHHHcCC------------------CCcCE
Confidence 444555555555 556666654 379999999999888875410 11235
Q ss_pred EEecCCcchhHHHHHHhCCCceEEEecC-CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHh
Q psy13453 634 AYTSDQSNSSVEKSAIIGDVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQE 712 (764)
Q Consensus 634 i~~S~~aH~Sv~kAa~~lGl~v~~Vp~d-~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~ 712 (764)
|+++..+|.++..++...|.+++.++++ +++.+|+++|+++|+++ +.+|+ .++.+|.+.|+++|+++|++
T Consensus 79 Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v~---~~n~~G~~~~l~~i~~l~~~ 149 (373)
T 3frk_A 79 VIVPSNTFIATALAVSYTGAKPIFVEPDIRTYNIDPSLIESAITEK------TKAII---AVHLYGQPADMDEIKRIAKK 149 (373)
T ss_dssp EEEETTSCTHHHHHHHHHSCEEEEECEETTTTEECGGGTGGGCCTT------EEEEE---EECCTTCCCCHHHHHHHHHH
T ss_pred EEECCCCcHHHHHHHHHcCCEEEEEeccccccCcCHHHHHHhcCCC------CeEEE---EECCCcCcccHHHHHHHHHH
Confidence 8899999999999999999999999998 67899999999988653 33555 45689999999999999999
Q ss_pred cCCEEEEeccccccccccchhhhhhcCCCcccEEEEc--CCccCCCCcCceee
Q psy13453 713 YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFN--THKWLLVNFDCSAM 763 (764)
Q Consensus 713 ~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d--~HK~l~~P~~~g~l 763 (764)
||+|+|+|+||+.+..+..+ . -| ..+|.++++ .||+++.+...|++
T Consensus 150 ~~~~li~D~a~~~g~~~~~~--~--~~-~~~d~~~~S~~~~K~l~~~g~gg~~ 197 (373)
T 3frk_A 150 YNLKLIEDAAQAHGSLYKGM--K--VG-SLGDAAGFSFYPAKNLGSLGDGGAV 197 (373)
T ss_dssp HTCEEEEECTTCTTCEETTE--E--TT-SSSSEEEEECCTTSSSCCSSSCEEE
T ss_pred cCCEEEEECCcccCCEECCE--e--cc-ccccEEEEeCcCCCccCccceeEEE
Confidence 99999999999876543221 1 11 124777777 77999763445554
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.48 E-value=3.3e-13 Score=151.24 Aligned_cols=180 Identities=12% Similarity=0.099 Sum_probs=118.4
Q ss_pred cccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCce
Q psy13453 553 SWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKL 632 (764)
Q Consensus 553 ~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~ 632 (764)
.|...+...++ .+++++++|.+ ..+||+|||+||..++.+++...... +....
T Consensus 71 ~y~~~~~~~~l----~~~la~~~~~~-----------~v~~t~ggt~A~~~al~~~~~~~~~~-----------Gd~~~- 123 (467)
T 1ax4_A 71 AYAGSRNYYDL----KDKAKELFNYD-----------YIIPAHQGRGAENILFPVLLKYKQKE-----------GKAKN- 123 (467)
T ss_dssp CSSSCHHHHHH----HHHHHHHHCCC-----------EEEEESSHHHHHHHHHHHHHHHHHHT-----------TCCSS-
T ss_pred ccccCccHHHH----HHHHHHHcCCC-----------cEEEcCCcHHHHHHHHHHHHHhhccC-----------CCccc-
Confidence 45445554444 45667777753 47999999999999999887632111 00011
Q ss_pred EEEecCCcchh-HHHHHHhCCCceEEEecC----------CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCc-ccc
Q psy13453 633 VAYTSDQSNSS-VEKSAIIGDVPVRQLRSD----------DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGT-CAF 700 (764)
Q Consensus 633 vi~~S~~aH~S-v~kAa~~lGl~v~~Vp~d----------~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~-Gai 700 (764)
.|+++ ..||. ...++...|..++.++.+ .++.+|+++|+++|++.. ...+.+|+.+..++.+ |.+
T Consensus 124 ~viv~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~--~~~~~~vi~~~~~np~gG~~ 200 (467)
T 1ax4_A 124 PVFIS-NFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHG--ADNIVAIVSTVTCNSAGGQP 200 (467)
T ss_dssp CEEEE-SSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBC
T ss_pred eEEEe-ccccchhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcC--CCCeeEEEEeccccCCCccC
Confidence 24555 66744 456677788887766542 156899999999998642 1125577777777777 654
Q ss_pred ---ccHHHHHHHHHhcCCEEEEeccccc-cccccchhhhhhcCC----------CcccEEEEcCCccCCCCcCceee
Q psy13453 701 ---DNLEELGPICQEYNIWLHVDAAYAG-SALLLPEYAHLKRGL----------EYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 701 ---Dpl~eIa~i~~~~glwLHVDaA~Gg-~~l~~~~~r~~l~gi----------e~aDSit~d~HK~l~~P~~~g~l 763 (764)
+++++|+++|++||+|||+|++++. +..+.++......|+ +.+|.+++++||+++.|.| |++
T Consensus 201 ~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G-g~~ 276 (467)
T 1ax4_A 201 VSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIG-GLV 276 (467)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSC-EEE
T ss_pred CChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceEEEeccccCCCCcc-eEE
Confidence 7899999999999999999998654 222111100001111 3469999999999998855 443
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.3e-13 Score=147.41 Aligned_cols=164 Identities=15% Similarity=0.110 Sum_probs=120.1
Q ss_pred ccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceE
Q psy13453 554 WLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633 (764)
Q Consensus 554 ~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~v 633 (764)
+..++...++++ .+++++|.+. .+++++||+|+..++.+.+ .. ++..
T Consensus 34 ~~~~~~~~~l~~----~la~~~~~~~-----------~i~~~sGt~al~~~l~~l~---~~---------------~gd~ 80 (388)
T 1b9h_A 34 RMGGDEVNSFER----EFAAHHGAAH-----------ALAVTNGTHALELALQVMG---VG---------------PGTE 80 (388)
T ss_dssp TTTCSHHHHHHH----HHHHHTTCSE-----------EEEESCHHHHHHHHHHHTT---CC---------------TTCE
T ss_pred ecCCHHHHHHHH----HHHHHhCCCe-----------EEEeCCHHHHHHHHHHHcC---CC---------------CcCE
Confidence 344455555554 5666677642 4666667999988887541 00 1235
Q ss_pred EEecCCcchhHHHHHHhCCCceEEEecCC-CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHh
Q psy13453 634 AYTSDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQE 712 (764)
Q Consensus 634 i~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~-~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~ 712 (764)
|+++..+|.+...++...|..++.+|+++ ++.+|+++|+++|+++ +.+|+ .++.+|.+.|+++|+++|++
T Consensus 81 Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~~------~~~v~---~~n~tG~~~~l~~i~~la~~ 151 (388)
T 1b9h_A 81 VIVPAFTFISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTPR------TKVIM---PVHMAGLMADMDALAKISAD 151 (388)
T ss_dssp EEEESSSCTHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTT------EEEEC---CBCGGGCCCCHHHHHHHHHH
T ss_pred EEECCCccHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCcC------ceEEE---EeCCccCcCCHHHHHHHHHH
Confidence 88899999999999999999999999986 4899999999998543 33444 67789999999999999999
Q ss_pred cCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 713 YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 713 ~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
||+|+|+|+||+.+....... +..+..++..+++.||++..+. +|++
T Consensus 152 ~~~~li~D~a~~~g~~~~~~~---~~~~~~i~~~S~s~~K~l~g~~-~G~~ 198 (388)
T 1b9h_A 152 TGVPLLQDAAHAHGARWQGKR---VGELDSIATFSFQNGKLMTAGE-GGAV 198 (388)
T ss_dssp HTCCBCEECTTCTTCEETTEE---GGGSSSCEEEECCTTSSSCSSS-CEEE
T ss_pred cCCEEEEecchhcCCccCCee---cccccceEEEEccCCCcccCCC-eEEE
Confidence 999999999998654432111 1112246899999999997654 5654
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.9e-13 Score=146.50 Aligned_cols=168 Identities=13% Similarity=0.024 Sum_probs=125.5
Q ss_pred cCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEE
Q psy13453 555 LSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVA 634 (764)
Q Consensus 555 ~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi 634 (764)
..++.+.++.+++.+++++++|.+. ..+||+|||+++..++... .. +-.|
T Consensus 28 h~~~~~~~~~~~~~~~l~~~~~~~~----------~v~~~~sgt~a~~~~~~~~-----~~---------------gd~v 77 (379)
T 3ke3_A 28 HMSKAFQEVMNDLLSNLKTVYNAEA----------AVIIPGSGTYGMEAVARQL-----TI---------------DEDC 77 (379)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHTCSE----------EEEEESCHHHHHHHHHHHH-----CT---------------TCEE
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCC----------EEEEcCChhHHHHHHHHhC-----CC---------------CCeE
Confidence 3477888899999999999999863 4688999999988765321 11 1135
Q ss_pred EecCCcchhH--HHHHHhCCC--ceEEEecCCC---------CcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc
Q psy13453 635 YTSDQSNSSV--EKSAIIGDV--PVRQLRSDDN---------GVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD 701 (764)
Q Consensus 635 ~~S~~aH~Sv--~kAa~~lGl--~v~~Vp~d~~---------g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD 701 (764)
++++.+|++. ...+...|+ .++.++++.. +.+|+++|+++|++. .+-+|+++..+|.+|.+.
T Consensus 78 i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~~~~G~~~ 152 (379)
T 3ke3_A 78 LIIRNGWFSYRWTQILEKGKFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKED-----KSAIVYAPHVETSSGIIL 152 (379)
T ss_dssp EEEECSHHHHHHHHHHHHHCCSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHH-----TCSEEEEESEETTTTEEC
T ss_pred EEEeCCchhHHHHHHHHHhCCCCceEEEeccccccccccCCCCCCCHHHHHHHHhhc-----CCcEEEEEeecCCCceeC
Confidence 5666677653 334455564 6778887542 369999999999653 134788899999999999
Q ss_pred c---HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 702 N---LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 702 p---l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
| +++|+++|++||+++|+|++++ +.....- .-.| +|.++.++|||++.|.++|+++
T Consensus 153 ~~~~l~~i~~~~~~~~~~li~D~~~~-g~~~~~~---~~~~---~d~~~~s~~K~l~~~~g~g~~~ 211 (379)
T 3ke3_A 153 SEEYIKALSEAVHSVGGLLVIDCIAS-GCVWLDM---KELG---IDVLISAPQKGWSSTPCAGLVM 211 (379)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECTTC-TTCCCCH---HHHT---CSEEEECTTTTTCSCCCEEEEE
T ss_pred CHHHHHHHHHHHHHcCCEEEEEeccc-CCccccc---cccC---CCEEEecchhhcCCCCceEEEE
Confidence 9 9999999999999999999998 4332221 1113 4999999999999999998874
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=4.9e-13 Score=146.55 Aligned_cols=193 Identities=10% Similarity=-0.042 Sum_probs=141.4
Q ss_pred HHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhc
Q psy13453 538 IVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQ 617 (764)
Q Consensus 538 ~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~ 617 (764)
.+.+.+...+......|...+...++++.+.+|+.+.+|.+-+ ....++|+|||+++..++.+.. .
T Consensus 58 ~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~-------~~~v~~~~g~t~al~~~~~~l~----~--- 123 (389)
T 1o4s_A 58 PVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDIS-------PDQVVVTNGAKQALFNAFMALL----D--- 123 (389)
T ss_dssp HHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCC-------GGGEEEESHHHHHHHHHHHHHC----C---
T ss_pred HHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCC-------HHHEEEecCHHHHHHHHHHHhC----C---
Confidence 3444555555433334544556788999999999998887421 1368999999999988877541 1
Q ss_pred cCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCC--CCcccHHHHHHHHHHhhhcCCCceEEEEeeccC
Q psy13453 618 SKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTT 695 (764)
Q Consensus 618 ~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~--~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT 695 (764)
++..|++++.+|.++..+++..|.+++.+|.++ ++.+|+++|+++|++. +-+|+.+..++
T Consensus 124 ------------~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~n 185 (389)
T 1o4s_A 124 ------------PGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGK------TKAVLINSPNN 185 (389)
T ss_dssp ------------TTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTT------EEEEEEESSCT
T ss_pred ------------CCCEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccC------ceEEEEcCCCC
Confidence 112577888999999999999999999999974 5689999999988642 34667788888
Q ss_pred Cccccc---cHHHHHHHHHhcCCEEEEecccccccccc--chhhhhhcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 696 GTCAFD---NLEELGPICQEYNIWLHVDAAYAGSALLL--PEYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 696 ~~GaiD---pl~eIa~i~~~~glwLHVDaA~Gg~~l~~--~~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
.+|.+- ++++|+++|++||+|+++|.+|+.+..-. +... .+.+....|.+..++||+++.| +.+|++
T Consensus 186 ptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~-~~~~~~~~~i~~~s~sK~~~~~G~r~G~l 258 (389)
T 1o4s_A 186 PTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSIL-DVSEGFDRIVYINGFSKSHSMTGWRVGYL 258 (389)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHH-HHCSSSTTEEEEEESTTTTTCGGGCCEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHh-hcCCCCCcEEEEeechhhcCCcccceEEE
Confidence 999984 59999999999999999999999765321 1111 2233345699999999999733 236765
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-12 Score=141.46 Aligned_cols=221 Identities=12% Similarity=0.092 Sum_probs=163.9
Q ss_pred ccccCCcceeeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc
Q psy13453 11 AYPSETLSLLIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS 90 (764)
Q Consensus 11 ~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~ 90 (764)
.+.++. .|+++.++++.+|+.. +.||+++++++|+++|+++|++. ++.+++.+.+++++|.++|++++++
T Consensus 126 vl~~~~---~~~~~~~~~~~~g~~~---~~v~~~~~~~~d~~~l~~~i~~~----~~~~v~~~~~~nptG~~~~l~~i~~ 195 (397)
T 3f9t_A 126 IIVPIT---AHFSFEKGREMMDLEY---IYAPIKEDYTIDEKFVKDAVEDY----DVDGIIGIAGTTELGTIDNIEELSK 195 (397)
T ss_dssp EEEETT---CCTHHHHHHHHHTCEE---EEECBCTTSSBCHHHHHHHHHHS----CCCEEEEEBSCTTTCCBCCHHHHHH
T ss_pred EEECCc---chhHHHHHHHHcCcee---EEEeeCCCCcCCHHHHHHHHhhc----CCeEEEEECCCCCCCCCCCHHHHHH
Confidence 344444 6899999999999976 99999999999999999999872 2335577889999999999999886
Q ss_pred -----CCCceecccccc-----------------c----------------c------ceeeeecCCCcccccccccccc
Q psy13453 91 -----NGPLKVGGVLRR-----------------V----------------Y------SSCLVPRGQKSLRTTVLFHFLF 126 (764)
Q Consensus 91 -----~~wlHVDa~l~~-----------------~----------------y------~s~ll~rd~~~l~~~~s~~~d~ 126 (764)
++|+|+|++... . + +++++.+++.... .+.....+
T Consensus 196 l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~~~~g~~~~~~~~~~~-~~~~~~~~ 274 (397)
T 3f9t_A 196 IAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSLGVDSITIDPHKMGHCPIPSGGILFKDIGYKR-YLDVDAPY 274 (397)
T ss_dssp HHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGGTCSEEECCTTTTTCCCSSCEEEEESSGGGGG-GTCEECTT
T ss_pred HHHHhCCeEEEEccccchhhhhcccccccccccccccccccCCeEEEccccccCCCCCceEEEEeCHHHHH-hhccCCcc
Confidence 899999996421 0 0 0122232221111 00000001
Q ss_pred ----CCcccCCCC-cccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccc
Q psy13453 127 ----QHWQIPLGR-RFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKL 201 (764)
Q Consensus 127 ----~d~tle~SR-r~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~ 201 (764)
...++.++| ....+.+|+++..++.+++.+++++..++++++.+.|++. +++++.+|..++++|+..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~------- 346 (397)
T 3f9t_A 275 LTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKEN-NFKPVIEPILNIVAIEDE------- 346 (397)
T ss_dssp SSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCCSSSEEEEECT-------
T ss_pred ccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEcCCCccEEEEEeC-------
Confidence 122344666 4567799999999999999999999999999999999998 999889999999999753
Q ss_pred cccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13453 202 DNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 202 ~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~ 267 (764)
+ ..++.++|.++|..+... ..+.++|+++. ..+++++++.+++.|+++.
T Consensus 347 ---------~----~~~~~~~l~~~gi~v~~~---~~~~~~Ri~~~-~~~~~e~i~~~~~~l~~~l 395 (397)
T 3f9t_A 347 ---------D----YKEVCKKLRDRGIYVSVC---NCVKALRIVVM-PHIKREHIDNFIEILNSIK 395 (397)
T ss_dssp ---------T----HHHHHHHHHHTTCBCEEC---SSSSEEEEECC-TTCCHHHHHHHHHHHHHHC
T ss_pred ---------C----HHHHHHHHHhCCeEEecc---CCCCEEEEEEc-CCCCHHHHHHHHHHHHHhh
Confidence 1 357888888899743322 23478999766 6678999999999998764
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.46 E-value=8.1e-13 Score=144.10 Aligned_cols=167 Identities=13% Similarity=0.012 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
.....++.+++++++|.+. .+++++||+++..++.+.. . ++..|+++..+
T Consensus 87 ~~~~~~l~~~la~~~~~~~-----------~i~~~sGt~a~~~~l~~~~----~---------------~gd~v~~~~~~ 136 (399)
T 3tqx_A 87 QTIHKELEKDISEFLGTDD-----------TILYSSCFDANGGLFETLL----G---------------PEDAIISDELN 136 (399)
T ss_dssp BHHHHHHHHHHHHHHTCSE-----------EEEESCHHHHHHTTHHHHC----C---------------TTCEEEEETTC
T ss_pred chHHHHHHHHHHHHHCCCc-----------EEEECchHHHHHHHHHHhc----C---------------CCCEEEECCcc
Confidence 3556667788888888753 4677778999887765431 1 12368889999
Q ss_pred chhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEe
Q psy13453 641 NSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVD 720 (764)
Q Consensus 641 H~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVD 720 (764)
|.+...+++..|.+++.+|. +|+++|+++|++...+|..+.+|+.+..++.+|.+.|+++|+++|++||+|+|+|
T Consensus 137 ~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D 211 (399)
T 3tqx_A 137 HASIIDGIRLCKAQRYRYKN-----NAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVD 211 (399)
T ss_dssp CHHHHHHHHSCCSEEEEECT-----TCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEE
T ss_pred cHHHHHHHHHcCCceeEeCC-----CCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEE
Confidence 99999999999999988886 5788999999887666667889999999999999999999999999999999999
Q ss_pred ccccccccccc-hhhhhhcCC-CcccEEEEcCCccCCCCcCceee
Q psy13453 721 AAYAGSALLLP-EYAHLKRGL-EYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 721 aA~Gg~~l~~~-~~r~~l~gi-e~aDSit~d~HK~l~~P~~~g~l 763 (764)
.+|+.++.... .......++ ...|.++.++||+++.+.+ |++
T Consensus 212 e~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~ 255 (399)
T 3tqx_A 212 DSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGASG-GYT 255 (399)
T ss_dssp CTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCSSCC-EEE
T ss_pred CCccccccCCCCCchHHhhCCCCCCcEEEecchHhcccCce-EEE
Confidence 99974332111 011112232 4569999999999985544 554
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-13 Score=150.38 Aligned_cols=160 Identities=12% Similarity=0.140 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
.+-.++.+++++++|.+. .+|+++||+++..++.+.+ .. ++..|+++..+|
T Consensus 42 ~l~~~l~~~la~~~g~~~-----------~i~~~~gt~al~~~~~~~~---~~---------------~gd~Vl~~~~~~ 92 (418)
T 2c81_A 42 SMERKFAKAFADFNGVPY-----------CVPTTSGSTALMLALEALG---IG---------------EGDEVIVPSLTW 92 (418)
T ss_dssp CHHHHHHHHHHHHHTCSE-----------EEEESCHHHHHHHHHHHTT---CC---------------TTCEEEEESSSC
T ss_pred HHHHHHHHHHHHHhCCCc-----------EEEeCCHHHHHHHHHHHcC---CC---------------CcCEEEECCCcc
Confidence 344556678888888752 5899999999988877542 00 122588899999
Q ss_pred hhHHHHHHhCCCceEEEecCC-CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEe
Q psy13453 642 SSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVD 720 (764)
Q Consensus 642 ~Sv~kAa~~lGl~v~~Vp~d~-~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVD 720 (764)
.+...++...|.+++.+|+++ ++.+|+++|+++|++. +-+|+. ++.+|...|+++|+++|++||+|+|+|
T Consensus 93 ~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~------~~~v~~---~~~~G~~~~~~~i~~~~~~~~~~li~D 163 (418)
T 2c81_A 93 IATATAVLNVNALPVFVDVEADTYCIDPQLIKSAITDK------TKAIIP---VHLFGSMANMDEINEIAQEHNLFVIED 163 (418)
T ss_dssp THHHHHHHHTTCEEEEECBCTTTCSBCHHHHGGGCCTT------EEEECC---BCCTTCCCCHHHHHHHHHHTTCEEEEE
T ss_pred HhHHHHHHHcCCEEEEEecCCCCCCcCHHHHHHhhCCC------CeEEEE---eCCcCCcccHHHHHHHHHHCCCEEEEE
Confidence 999999999999999999986 7899999999988643 334543 347899999999999999999999999
Q ss_pred ccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 721 AAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 721 aA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
+||+.+..+..+ . +..+..++..++++||+++.. .+|++
T Consensus 164 ~a~~~~~~~~~~--~-~~~~~~~~~~s~s~~K~~~~g-~~g~~ 202 (418)
T 2c81_A 164 CAQSHGSVWNNQ--R-AGTIGDIGAFSCQQGKVLTAG-EGGII 202 (418)
T ss_dssp CTTCTTCEETTE--E-TTSSSSEEEEECCTTSSSCSS-SCEEE
T ss_pred CcccccCccCCE--e-cccccceEEEeccCCcccCCC-CeEEE
Confidence 999987532211 1 112224577777789999863 55554
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-13 Score=150.44 Aligned_cols=176 Identities=14% Similarity=0.044 Sum_probs=125.5
Q ss_pred HHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhcc
Q psy13453 539 VGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQS 618 (764)
Q Consensus 539 lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~ 618 (764)
+.+.+...+... .+..++...++| +.+++++|.+ ..+||+|||+|+..++.+++.
T Consensus 18 v~~a~~~~~~~~--~~~~~~~~~~l~----~~la~~~~~~-----------~~~~~~sGt~al~~al~~~~~-------- 72 (367)
T 3nyt_A 18 IDAGIQRVLRHG--QYILGPEVTELE----DRLADFVGAK-----------YCISCANGTDALQIVQMALGV-------- 72 (367)
T ss_dssp HHHHHHHHHHHC--CCSSCHHHHHHH----HHHHHHHTCS-----------EEEEESCHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHhcC--CccCChHHHHHH----HHHHHHhCCC-----------cEEEeCCHHHHHHHHHHHhCC--------
Confidence 334444444332 233556655555 4566666764 379999999999988876520
Q ss_pred CCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCCC-CcccHHHHHHHHHHhhhcCCCceEEEEeeccCCc
Q psy13453 619 KNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDN-GVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGT 697 (764)
Q Consensus 619 ~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~-g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~ 697 (764)
.++..|+++..+|.+...++...|..++.++++++ +.+|+++|+++|+++ +.+|+ .++.+
T Consensus 73 ----------~~gd~Vi~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~------~~~v~---~~~~~ 133 (367)
T 3nyt_A 73 ----------GPGDEVITPGFTYVATAETVALLGAKPVYVDIDPRTYNLDPQLLEAAITPR------TKAII---PVSLY 133 (367)
T ss_dssp ----------CTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGTGGGCCTT------EEEEC---CBCGG
T ss_pred ----------CCcCEEEECCCccHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHhcCcC------CcEEE---eeCCc
Confidence 11235888999999999999999999999999865 899999999998543 33444 56789
Q ss_pred cccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEc--CCccCCCCcCceee
Q psy13453 698 CAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFN--THKWLLVNFDCSAM 763 (764)
Q Consensus 698 GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d--~HK~l~~P~~~g~l 763 (764)
|...|+++|+++|++||+++|+|+||+.+.....+.. |. ..|.++++ +||+++.+-..|++
T Consensus 134 G~~~~~~~i~~la~~~~~~li~D~a~~~g~~~~~~~~----~~-~~di~~~Sf~~~K~l~~~g~gg~~ 196 (367)
T 3nyt_A 134 GQCADFDAINAIASKYGIPVIEDAAQSFGASYKGKRS----CN-LSTVACTSFFPSAPLGCYGDGGAI 196 (367)
T ss_dssp GCCCCHHHHHHHHHHTTCCBEEECTTTTTCEETTEET----TS-SSSEEEEECCTTSSSCCSSCCEEE
T ss_pred cChhhHHHHHHHHHHcCCEEEEECccccCCeECCeec----cC-CCCEEEEECCCCCcCCCcCceeEE
Confidence 9999999999999999999999999986544322111 11 12667777 59999873335554
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.2e-13 Score=146.35 Aligned_cols=176 Identities=14% Similarity=0.106 Sum_probs=128.3
Q ss_pred HHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhcc
Q psy13453 539 VGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQS 618 (764)
Q Consensus 539 lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~ 618 (764)
+.+.+...+... .|...+...++ .+.+++++|.+ ..+||+|||+|+..++.+++ .
T Consensus 21 ~~~~~~~~~~~~--~~~~~~~~~~l----~~~la~~~~~~-----------~~~~~~~gt~a~~~~~~~~~---~----- 75 (374)
T 3uwc_A 21 YLNDLREFIKTA--DFTLGAELEKF----EKRFAALHNAP-----------HAIGVGTGTDALAMSFKMLN---I----- 75 (374)
T ss_dssp HHHHHHHHHHHT--CCSSCHHHHHH----HHHHHHHTTCS-----------EEEEESCHHHHHHHHHHHTT---C-----
T ss_pred HHHHHHHHHHcC--CcccChhHHHH----HHHHHHHhCCC-----------cEEEeCCHHHHHHHHHHHcC---C-----
Confidence 555555544432 23344544444 45677777764 37899999999888776542 0
Q ss_pred CCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcc
Q psy13453 619 KNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTC 698 (764)
Q Consensus 619 ~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~G 698 (764)
.++..|+++..+|.+...++...|++++.+|+++++.+|+++|++++++. +.+|+ .++.+|
T Consensus 76 ----------~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~---~~n~~G 136 (374)
T 3uwc_A 76 ----------GAGDEVITCANTFIASVGAIVQAGATPVLVDSENGYVIDPEKIEAAITDK------TKAIM---PVHYTG 136 (374)
T ss_dssp ----------CTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTSSBCGGGTGGGCCTT------EEEEC---CBCGGG
T ss_pred ----------CCCCEEEECCCccHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHhCCCC------ceEEE---EeCCcC
Confidence 11235788999999999999999999999999988999999999988653 33444 677899
Q ss_pred ccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCC--ccCCCCcCceee
Q psy13453 699 AFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTH--KWLLVNFDCSAM 763 (764)
Q Consensus 699 aiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~H--K~l~~P~~~g~l 763 (764)
.+.|+++|+++|++||+|+|+|+||+.+..+..+.. + ..+|.+++++| |+++.+-.+|++
T Consensus 137 ~~~~~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~----~-~~~d~~~~s~~~~K~l~~~g~~g~~ 198 (374)
T 3uwc_A 137 NIADMPALAKIAKKHNLHIVEDACQTILGRINDKFV----G-SWGQFACFSLHPLKNLNVWSDAGVI 198 (374)
T ss_dssp CCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEET----T-SSSSEEEEECSSSSSSCCSSCCEEE
T ss_pred CcCCHHHHHHHHHHcCCEEEEeCCCccCceeCCeec----c-ccccEEEEeCCCCCcCCccceeEEE
Confidence 999999999999999999999999987654322111 1 12599999988 999863335554
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-13 Score=155.11 Aligned_cols=175 Identities=17% Similarity=0.071 Sum_probs=120.7
Q ss_pred ccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceE
Q psy13453 554 WLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633 (764)
Q Consensus 554 ~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~v 633 (764)
|..++...++|+.+.+++++++|.+.+ .+...++.++|+++|+.++.+.. . +...
T Consensus 82 y~~~~~~~~le~~~~~~~a~~~g~~~~------~~~~~V~~~sGs~an~~~~~all----~---------------pGD~ 136 (483)
T 1rv3_A 82 YGGTEHIDELETLCQKRALQAYGLDPQ------CWGVNVQPYSGSPANFAVYTALV----E---------------PHGR 136 (483)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHTTCCTT------TEEEECCCSSHHHHHHHHHHHHT----C---------------TTCE
T ss_pred cCcchhHHHHHHHHHHHHHHHhCCCcc------cCceEEEECCcHHHHHHHHHHhc----C---------------CCCE
Confidence 445667789999999999999998742 00022444445588877665431 1 1225
Q ss_pred EEecCCcchhHHHH--------HHhCCCceEEEec--C-CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc
Q psy13453 634 AYTSDQSNSSVEKS--------AIIGDVPVRQLRS--D-DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN 702 (764)
Q Consensus 634 i~~S~~aH~Sv~kA--------a~~lGl~v~~Vp~--d-~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp 702 (764)
|++++.+|.+.... +...|..++.|+. | +++.+|+++|++++++. .|-+|++ ..++.+ .+.|
T Consensus 137 Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~~-----~tklIi~-~~sn~~-~~~d 209 (483)
T 1rv3_A 137 IMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLF-----HPKLIIA-GTSCYS-RNLD 209 (483)
T ss_dssp EEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHH-----CCSEEEE-CCSSCC-SCCC
T ss_pred EEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHHHHHhhc-----CCcEEEE-eCCcCC-CcCC
Confidence 77788778766432 2233433555554 6 67899999999999843 2446666 444444 8889
Q ss_pred HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 703 LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 703 l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
+++|++||++||+|+|+|+||+.+......+...+ +.+|.++.++||++..|.+ |+++
T Consensus 210 l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~---~~~div~~s~~K~l~Gprg-G~i~ 267 (483)
T 1rv3_A 210 YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPF---EHCHVVTTTTHKTLRGCRA-GMIF 267 (483)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGG---GTCSEEEEESSGGGCCCSC-EEEE
T ss_pred HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCC---CCCcEEEecCcccCCCCCc-eEEE
Confidence 99999999999999999999886655433222222 2579999999999988988 7763
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=5e-13 Score=147.26 Aligned_cols=156 Identities=11% Similarity=0.048 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCC
Q psy13453 560 CTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQ 639 (764)
Q Consensus 560 ~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~ 639 (764)
......++.+++++++|.+. .+++++||+|+..++.+... ++..|+++..
T Consensus 62 ~~~~~~~l~~~la~~~g~~~-----------~i~~~sG~~a~~~~l~~~~~-------------------~gd~vi~~~~ 111 (398)
T 2rfv_A 62 GNPTTDALEKKLAVLERGEA-----------GLATASGISAITTTLLTLCQ-------------------QGDHIVSASA 111 (398)
T ss_dssp CCHHHHHHHHHHHHHHTCSE-----------EEEESSHHHHHHHHHHHHCC-------------------TTCEEEEESS
T ss_pred CChHHHHHHHHHHHHhCCCc-----------EEEECCHHHHHHHHHHHHhC-------------------CCCEEEEcCC
Confidence 34556667788999988752 57888899999888876521 1225788899
Q ss_pred cchhHHHHH----HhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCC
Q psy13453 640 SNSSVEKSA----IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNI 715 (764)
Q Consensus 640 aH~Sv~kAa----~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~gl 715 (764)
+|.+...++ ...|..++.+|.+ |+++|+++|+++ +.+|+++..++.+|.+.|+++|+++|++||+
T Consensus 112 ~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~ 180 (398)
T 2rfv_A 112 IYGCTHAFLSHSMPKFGINVRFVDAA-----KPEEIRAAMRPE------TKVVYIETPANPTLSLVDIETVAGIAHQQGA 180 (398)
T ss_dssp SCHHHHHHHHTHHHHTTCEEEEECTT-----SHHHHHHHCCTT------EEEEEEESSBTTTTBCCCHHHHHHHHHHTTC
T ss_pred CcccHHHHHHHHHHHcCCEEEEeCCC-----CHHHHHHhcCCC------CeEEEEECCCCCCCcccCHHHHHHHHHHcCC
Confidence 999988876 7789999999875 799999888643 4588889999999999999999999999999
Q ss_pred EEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcC--ceee
Q psy13453 716 WLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD--CSAM 763 (764)
Q Consensus 716 wLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~--~g~l 763 (764)
|+|+|.+|+.+....+. .+ .+|.++.++||+++.|.+ +|++
T Consensus 181 ~li~De~~~~~~~~~~~---~~----~~di~~~s~sK~~~~~g~~~~G~~ 223 (398)
T 2rfv_A 181 LLVVDNTFMSPYCQQPL---QL----GADIVVHSVTKYINGHGDVIGGII 223 (398)
T ss_dssp EEEEECTTTCTTTCCGG---GG----TCSEEEEETTTTTTCSSCCCCEEE
T ss_pred EEEEECCCcccccCCch---hh----CCcEEEEeCcccccCCCCceEEEE
Confidence 99999999976543321 11 369999999999988876 5765
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.8e-13 Score=145.29 Aligned_cols=179 Identities=11% Similarity=0.051 Sum_probs=134.2
Q ss_pred ccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceE
Q psy13453 554 WLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633 (764)
Q Consensus 554 ~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~v 633 (764)
|...+....+.+++.+++++.+|.+.+ .....+||+|||+++..++.+.. . ++..
T Consensus 74 y~~~~g~~~l~~~l~~~l~~~~g~~~~------~~~~i~~~~g~~~a~~~~~~~l~----~---------------~gd~ 128 (407)
T 3nra_A 74 YTEYRGDLGIRDLLAPRLAAFTGAPVD------ARDGLIITPGTQGALFLAVAATV----A---------------RGDK 128 (407)
T ss_dssp SCCTTCCHHHHHHHHHHHHHHHTSCCC------TTTSEEEESHHHHHHHHHHHTTC----C---------------TTCE
T ss_pred cCCCCCCHHHHHHHHHHHHHHhCCCCC------CCCcEEEeCCcHHHHHHHHHHhC----C---------------CCCE
Confidence 444556778999999999999998521 01358999999999988776431 0 1235
Q ss_pred EEecCCcchhHHHHHHhCCCceEEEec------CCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc---HH
Q psy13453 634 AYTSDQSNSSVEKSAIIGDVPVRQLRS------DDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN---LE 704 (764)
Q Consensus 634 i~~S~~aH~Sv~kAa~~lGl~v~~Vp~------d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp---l~ 704 (764)
|+++..+|.++..+++..|.+++.+|. ++++.+|+++|+++|++. +.+|+.+..++.+|.+-| ++
T Consensus 129 vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~nptG~~~~~~~l~ 202 (407)
T 3nra_A 129 VAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAG------ARVFLFSNPNNPAGVVYSAEEIG 202 (407)
T ss_dssp EEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTT------CCEEEEESSCTTTCCCCCHHHHH
T ss_pred EEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhhC------CcEEEEcCCCCCCCcccCHHHHH
Confidence 788899999999999999999999998 478899999999999763 346777888999999977 99
Q ss_pred HHHHHHHhcCCEEEEeccccccccccchhhhh--hc-CCCcccEEEEcCCccCCCC-cCceee
Q psy13453 705 ELGPICQEYNIWLHVDAAYAGSALLLPEYAHL--KR-GLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 705 eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~--l~-gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
+|+++|++||+|+++|.||+++..-...+... +. .....+-+..++||+++.| ..+|++
T Consensus 203 ~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~ 265 (407)
T 3nra_A 203 QIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVA 265 (407)
T ss_dssp HHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEE
T ss_pred HHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEE
Confidence 99999999999999999998754321111110 11 1123467888999999844 455654
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-13 Score=163.19 Aligned_cols=170 Identities=14% Similarity=0.027 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchh
Q psy13453 564 EVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSS 643 (764)
Q Consensus 564 E~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~S 643 (764)
-.++.+.+++++|.+. ..++++|+|++|..++.+... +...|+++..+|.|
T Consensus 175 i~e~e~~lA~~~gae~----------~i~v~nGtt~an~~ai~al~~-------------------pGD~VLv~~~~H~S 225 (730)
T 1c4k_A 175 AVAAEKHAARVYNADK----------TYFVLGGSSNANNTVTSALVS-------------------NGDLVLFDRNNHKS 225 (730)
T ss_dssp HHHHHHHHHHHTTCSE----------EEEESSHHHHHHHHHHHHHCC-------------------TTCEEEEETTCCHH
T ss_pred HHHHHHHHHHHHCCCc----------EEEECCHHHHHHHHHHHHhcC-------------------CCCEEEEcCCchHH
Confidence 3456678899999865 245677777998888765311 12358899999999
Q ss_pred HHHH-HHhCCCceEEEecCCC-----CcccHHHH-----HHHHHHh-hh--cCCCc-eEEEEeeccCCccccccHHHHHH
Q psy13453 644 VEKS-AIIGDVPVRQLRSDDN-----GVLRGDAL-----LTAVKED-LA--KGLIP-CCLIATLGTTGTCAFDNLEELGP 708 (764)
Q Consensus 644 v~kA-a~~lGl~v~~Vp~d~~-----g~md~~~L-----e~~I~~~-~~--~G~~p-~~VvataGTT~~GaiDpl~eIa~ 708 (764)
+..+ +...|..++.++.+.+ |.+|+++| +++|++. .+ ....| -+|+++.+| .+|.+.|+++|++
T Consensus 226 ~~~~~~~l~Ga~~v~v~~~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn-~~G~v~dl~~I~~ 304 (730)
T 1c4k_A 226 VYNSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGT-YDGTIYNAHEVVK 304 (730)
T ss_dssp HHHHHTTTTCCEEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBC-TTSEEECHHHHHH
T ss_pred HHHHHHHHCCCEEEEEeCCccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCC-CCCeecCHHHHHH
Confidence 9998 7888999888887532 56899999 7776543 11 01123 467777764 6999999999999
Q ss_pred HHHhcCCEEEEeccccccccccchhhh--hhcC-CCccc----EEEEcCCccCCCCcCceee
Q psy13453 709 ICQEYNIWLHVDAAYAGSALLLPEYAH--LKRG-LEYVD----SFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 709 i~~~~glwLHVDaA~Gg~~l~~~~~r~--~l~g-ie~aD----Sit~d~HK~l~~P~~~g~l 763 (764)
+|++||+|+|||+||++++.+.+.++. .+.- -..+| .++.++||+++.|.++|++
T Consensus 305 la~~~g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I 366 (730)
T 1c4k_A 305 RIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQI 366 (730)
T ss_dssp HHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEE
T ss_pred HHHHcCCeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEE
Confidence 999999999999999876666554431 1110 01357 9999999999998888876
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3e-13 Score=148.07 Aligned_cols=156 Identities=11% Similarity=0.036 Sum_probs=117.3
Q ss_pred HHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHH
Q psy13453 566 LVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVE 645 (764)
Q Consensus 566 ~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~ 645 (764)
++.+.+++++|.+ .++||+|||+|+..++.+++ . .++..|+++..+|.+..
T Consensus 60 ~l~~~la~~~~~~-----------~~i~~~~gt~al~~~l~~~~---~---------------~~gd~vl~~~~~~~~~~ 110 (391)
T 3dr4_A 60 EFEKAFADYCGVK-----------HAIACNNGTTALHLALVAMG---I---------------GPGDEVIVPSLTYIASA 110 (391)
T ss_dssp HHHHHHHHHHTCS-----------EEEEESSHHHHHHHHHHHHT---C---------------CTTCEEEEESSSCTHHH
T ss_pred HHHHHHHHHhCCC-----------cEEEeCCHHHHHHHHHHHcC---C---------------CCcCEEEECCCchHHHH
Confidence 3445566666664 37999999999988887652 0 01235888999999999
Q ss_pred HHHHhCCCceEEEecC-CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEecccc
Q psy13453 646 KSAIIGDVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYA 724 (764)
Q Consensus 646 kAa~~lGl~v~~Vp~d-~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~G 724 (764)
.++...|.+++.++++ +++.+|+++|+++++++ +.+|+ .++.+|.+.|+++|+++|++||+|+++|+||+
T Consensus 111 ~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~---~~n~tG~~~~~~~i~~l~~~~~~~li~D~a~~ 181 (391)
T 3dr4_A 111 NSVTYCGATPVLVDNDPRTFNLDAAKLEALITPR------TKAIM---PVHLYGQICDMDPILEVARRHNLLVIEDAAEA 181 (391)
T ss_dssp HHHHHTTCEEEEECBCTTTCSBCGGGSGGGCCTT------EEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTC
T ss_pred HHHHHCCCEEEEEecCccccCcCHHHHHHhcCCC------ceEEE---EECCCCChhhHHHHHHHHHHcCCEEEEECccc
Confidence 9999999999999998 67899999999988643 33444 35689999999999999999999999999998
Q ss_pred ccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 725 GSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 725 g~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
.+....+... ..+..++.++++.||+++.+. .|++
T Consensus 182 ~g~~~~~~~~---~~~~di~~~S~s~~K~l~~g~-gg~~ 216 (391)
T 3dr4_A 182 VGATYRGKKS---GSLGDCATFSFFGNAIITTGE-GGMI 216 (391)
T ss_dssp TTCEETTEET---TSSSSEEEEECBTTSSSCCBS-CEEE
T ss_pred ccceECCeee---cccCCEEEEECCCCCcCCcCC-eEEE
Confidence 7655443211 112235777777999997644 4443
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=3e-13 Score=149.33 Aligned_cols=190 Identities=14% Similarity=0.043 Sum_probs=139.5
Q ss_pred HHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhcc
Q psy13453 539 VGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQS 618 (764)
Q Consensus 539 lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~ 618 (764)
+.+.+ ..+......|...+...++++.+.+|+.+.+|++.+ ....++|+|||+++..++.+.. .
T Consensus 61 v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~-------~~~v~~~~g~t~a~~~~~~~~~----~---- 124 (409)
T 2gb3_A 61 FFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVK-------PENVLVTNGGSEAILFSFAVIA----N---- 124 (409)
T ss_dssp HHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCC-------GGGEEEESHHHHHHHHHHHHHC----C----
T ss_pred HHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCC-------HHHEEEeCCHHHHHHHHHHHhC----C----
Confidence 33444 555443334555556789999999999998886532 1468999999999998887641 1
Q ss_pred CCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCC--CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCC
Q psy13453 619 KNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTG 696 (764)
Q Consensus 619 ~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~--~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~ 696 (764)
++..|++++.+|.++..++...|.+++.+|.++ ++.+ +++|+++|++. +-+|+.+..++.
T Consensus 125 -----------~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~l~~~l~~~------~~~v~~~~p~np 186 (409)
T 2gb3_A 125 -----------PGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQNLESFINER------TKGIVLSNPCNP 186 (409)
T ss_dssp -----------TTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCC-CTTGGGGCCTT------EEEEEEESSCTT
T ss_pred -----------CCCEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCcc-HHHHHHhhCcC------CeEEEECCCCCC
Confidence 122578888999999999999999999999974 4455 88888877542 446777888888
Q ss_pred cccc---ccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 697 TCAF---DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 697 ~Gai---Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
+|.+ +++++|+++|++||+|+++|.+|+++..-. +....+.++...|.++.++||+++.| +.+|++
T Consensus 187 tG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~ 256 (409)
T 2gb3_A 187 TGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRG-EFASALSIESDKVVVIDSVSKKFSACGARVGCL 256 (409)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEE
T ss_pred CCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCC-CCCCccccCCCCEEEEecchhccCCccceEEEE
Confidence 9988 579999999999999999999999854321 11111345555699999999999744 236665
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.5e-12 Score=141.13 Aligned_cols=182 Identities=19% Similarity=0.084 Sum_probs=131.6
Q ss_pred ccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceE
Q psy13453 554 WLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633 (764)
Q Consensus 554 ~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~v 633 (764)
|...+...++++.+.+|+.+.+|++.+ ....+||+|||+++..++.+++. ++..
T Consensus 71 y~~~~~~~~l~~~la~~~~~~~g~~~~-------~~~v~~t~g~t~a~~~~~~~~~~-------------------~gd~ 124 (407)
T 2zc0_A 71 YTPANGIPELREELAAFLKKYDHLEVS-------PENIVITIGGTGALDLLGRVLID-------------------PGDV 124 (407)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHSCCCCC-------GGGEEEESHHHHHHHHHHHHHCC-------------------TTCE
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCC-------cceEEEecCHHHHHHHHHHHhcC-------------------CCCE
Confidence 544456788999999999988886422 13678999999999888876521 0124
Q ss_pred EEecCCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEE-EEeeccCCccccccHH---HHHHH
Q psy13453 634 AYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCL-IATLGTTGTCAFDNLE---ELGPI 709 (764)
Q Consensus 634 i~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~V-vataGTT~~GaiDpl~---eIa~i 709 (764)
|++...+|.+...++...|.+++.+|.++++ +|+++|+++|++...++..+-+| +....++.+|.+-|++ +|+++
T Consensus 125 vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~ 203 (407)
T 2zc0_A 125 VITENPSYINTLLAFEQLGAKIEGVPVDNDG-MRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEI 203 (407)
T ss_dssp EEEEESCCHHHHHHHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHH
T ss_pred EEEeCCChHHHHHHHHHcCCEEEEcccCCCC-CCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHH
Confidence 7788889999999999999999999998766 99999999998433232234454 4567788899998887 99999
Q ss_pred HHhcCCEEEEeccccccccccchhhhhhcCC--CcccEEEEcCCccCCCCcCceee
Q psy13453 710 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGL--EYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 710 ~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gi--e~aDSit~d~HK~l~~P~~~g~l 763 (764)
|++||+|+|+|.+|+++..-..... .+..+ ...+-+..++||+++.-+.+|++
T Consensus 204 ~~~~~~~li~De~~~~~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~ 258 (407)
T 2zc0_A 204 ASKYDLLIIEDTAYNFMRYEGGDIV-PLKALDNEGRVIVAGTLSKVLGTGFRIGWI 258 (407)
T ss_dssp HHHHTCEEEEECTTTTSBSSCSSCC-CGGGGCSSCCEEEEEESTTTTCTTSCCEEE
T ss_pred HHHcCCEEEEECCCcccccCCCCCC-ChhhcCCCCCEEEEcccccccCCCcceEEE
Confidence 9999999999999998643211100 01111 11235677899999932347765
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.6e-13 Score=147.35 Aligned_cols=155 Identities=14% Similarity=0.096 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCC
Q psy13453 560 CTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQ 639 (764)
Q Consensus 560 ~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~ 639 (764)
......++.+++++++|.+ ..+||+|||+||..++.+.. . ++..|+++..
T Consensus 54 ~~~~~~~l~~~la~~~g~~-----------~~~~~~~gt~a~~~al~~l~----~---------------~gd~vi~~~~ 103 (412)
T 2cb1_A 54 KDPTAKALEERLKALEGAL-----------EAVVLASGQAATFAALLALL----R---------------PGDEVVAAKG 103 (412)
T ss_dssp CCHHHHHHHHHHHHHHTCS-----------EEEEESSHHHHHHHHHHTTC----C---------------TTCEEEEETT
T ss_pred CChHHHHHHHHHHHHhCCC-----------cEEEECCHHHHHHHHHHHHh----C---------------CCCEEEEeCC
Confidence 3344556667888888864 37899999999998887541 1 1225778889
Q ss_pred cchhHHHHHH----hCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCC
Q psy13453 640 SNSSVEKSAI----IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNI 715 (764)
Q Consensus 640 aH~Sv~kAa~----~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~gl 715 (764)
+|.+...++. ..|++++.+++| +++|+++|+++ +.+|+.+..++.+|.+.|+++|+++|++||+
T Consensus 104 ~~~~~~~~~~~~~~~~g~~~~~~~~~------~~~l~~~i~~~------~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~ 171 (412)
T 2cb1_A 104 LFGQTIGLFGQVLSLMGVTVRYVDPE------PEAVREALSAK------TRAVFVETVANPALLVPDLEALATLAEEAGV 171 (412)
T ss_dssp CCHHHHHHHHHTTTTTTCEEEEECSS------HHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHTC
T ss_pred CchhHHHHHHHHHHHcCCEEEEECCC------HHHHHHHhccC------CeEEEEeCCCCCCcccccHHHHHHHHHHcCC
Confidence 9988777643 468888888864 88898888653 4588889999999999999999999999999
Q ss_pred EEEEecccccc-ccccchhhhhhcCCCcccEEEEcCCccCCCCcC-ceee
Q psy13453 716 WLHVDAAYAGS-ALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD-CSAM 763 (764)
Q Consensus 716 wLHVDaA~Gg~-~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~-~g~l 763 (764)
|+|+|++|+.+ ....+ . -. .+|.++.++||+++.|.+ .|.+
T Consensus 172 ~li~D~~~~~~~~~~~~-~---~~---~~di~~~S~~K~~~~~~~~~G~~ 214 (412)
T 2cb1_A 172 ALVVDNTFGAAGALCRP-L---AW---GAHVVVESLTKWASGHGSVLGGA 214 (412)
T ss_dssp EEEEECGGGTTTTSCCG-G---GG---TCSEEEEETTTTTTCSSCCCCEE
T ss_pred EEEEECCCccccccCCc-c---cc---CCeEEEECCcccccCCCCcEEEE
Confidence 99999999886 32222 1 11 369999999999998876 5544
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-12 Score=143.93 Aligned_cols=160 Identities=17% Similarity=0.091 Sum_probs=120.2
Q ss_pred HHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHH
Q psy13453 566 LVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVE 645 (764)
Q Consensus 566 ~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~ 645 (764)
++.+.+++++|.+ ..+||+|||+|+..++.+.+ .. ++..|+++..+|.+..
T Consensus 36 ~l~~~la~~~~~~-----------~v~~~~ggt~al~~~~~~l~---~~---------------~gd~Vl~~~~~~~~~~ 86 (394)
T 1o69_A 36 RFEQSVKDYSKSE-----------NALALNSATAALHLALRVAG---VK---------------QDDIVLASSFTFIASV 86 (394)
T ss_dssp HHHHHHHHHHCCS-----------EEEEESCHHHHHHHHHHHTT---CC---------------TTCEEEEESSSCGGGT
T ss_pred HHHHHHHHHhCCC-----------cEEEeCCHHHHHHHHHHHcC---CC---------------CCCEEEECCCccHHHH
Confidence 3445566666652 47999999999988887641 00 1225888999999999
Q ss_pred HHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccc
Q psy13453 646 KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAG 725 (764)
Q Consensus 646 kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg 725 (764)
.++...|..++.+|+++++.+|+++|+++|++.. ..+-+|+++. .+|..+|+++|+++|++||+|+|+|+||+.
T Consensus 87 ~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~---~~~~~v~~~~---~~G~~~~l~~i~~l~~~~~~~li~Dea~~~ 160 (394)
T 1o69_A 87 APICYLKAKPVFIDCDETYNIDVDLLKLAIKECE---KKPKALILTH---LYGNAAKMDEIVEICKENDIVLIEDAAEAL 160 (394)
T ss_dssp HHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCS---SCCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCT
T ss_pred HHHHHcCCEEEEEEeCCCCCcCHHHHHHHHhccc---CCceEEEEEC---CCCChhhHHHHHHHHHHcCCEEEEECcCcc
Confidence 9999999999999999889999999999997631 1233555553 689999999999999999999999999984
Q ss_pred cccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 726 SALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 726 ~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
+..+.... ...+..+|.++++.||.++ |.++|+++
T Consensus 161 g~~~~~~~---~~~~~~~~~~s~s~~K~l~-~~~~G~~~ 195 (394)
T 1o69_A 161 GSFYKNKA---LGTFGEFGVYSYNGNKIIT-TSGGGMLI 195 (394)
T ss_dssp TCEETTEE---TTSSSSEEEEECCTTSSSC-CSSCEEEE
T ss_pred cceeCCcc---cccccCcEEEEEeCCccCC-CCCceEEE
Confidence 33332211 1112347999999999776 77888763
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.7e-13 Score=147.61 Aligned_cols=193 Identities=14% Similarity=0.042 Sum_probs=139.5
Q ss_pred HHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCC-cEEEeCChHHHHHHHHHHHHHHHhhhhc
Q psy13453 539 VGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPG-GGIIQSTASEATLVSILVAKRKMINHWQ 617 (764)
Q Consensus 539 lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~-~GvfTsGgTeANl~Al~aAR~~~~~~~~ 617 (764)
+.+.+...++.....|.......++++.+.+|+.+.+|++.+ .. ..+||+|||+++..++.+...
T Consensus 43 v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~-------~~~~v~~t~g~~~al~~~~~~~~~------- 108 (411)
T 2o0r_A 43 MLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYD-------PETEVLVTVGATEAIAAAVLGLVE------- 108 (411)
T ss_dssp HHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCC-------TTTSEEEEEHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCC-------CCceEEEeCCHHHHHHHHHHHhcC-------
Confidence 444444444432334544455688999999999999887532 13 589999999999888775421
Q ss_pred cCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCC---CCcccHHHHHHHHHHhhhcCCCceEEEEeecc
Q psy13453 618 SKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDD---NGVLRGDALLTAVKEDLAKGLIPCCLIATLGT 694 (764)
Q Consensus 618 ~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~---~g~md~~~Le~~I~~~~~~G~~p~~VvataGT 694 (764)
++..|+++..+|.++..++...|.+++.+|.+. ++.+|+++|+++|++. +-+|+.+..+
T Consensus 109 ------------~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~------~~~v~l~~~~ 170 (411)
T 2o0r_A 109 ------------PGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTPR------TRALIINSPH 170 (411)
T ss_dssp ------------TTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHHHCCTT------EEEEEEESSC
T ss_pred ------------CCCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHHHHHhhccC------ceEEEEeCCC
Confidence 112578888999999999999999999999875 3679999999998542 4477777888
Q ss_pred CCcccc---ccHHHHHHHHHhcCCEEEEeccccccccccchhh--hhhcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 695 TGTCAF---DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYA--HLKRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 695 T~~Gai---Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r--~~l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
+.+|.+ +++++|+++|++||+|+++|.+|+++..-..... ..+.+....|.+..++||+++.| +.+|++
T Consensus 171 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~ 245 (411)
T 2o0r_A 171 NPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWA 245 (411)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEEEE
Confidence 999998 4579999999999999999999987543211100 11122235699999999988733 236765
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=7.7e-13 Score=144.35 Aligned_cols=194 Identities=11% Similarity=0.027 Sum_probs=138.9
Q ss_pred HHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCC-cEEEeCChHHHHHHHHHHHHHHHhhhh
Q psy13453 538 IVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPG-GGIIQSTASEATLVSILVAKRKMINHW 616 (764)
Q Consensus 538 ~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~-~GvfTsGgTeANl~Al~aAR~~~~~~~ 616 (764)
.+.+.+...++.....|...+...++++.+.+|+.+.+|.+.+ .. ..+||+|||+++..++.+.. .
T Consensus 47 ~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~-------~~~~v~~~~g~~~a~~~~~~~~~----~-- 113 (386)
T 1u08_A 47 YLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPD-------ADSDITVTAGATEALYAAITALV----R-- 113 (386)
T ss_dssp HHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCC-------TTTTEEEESSHHHHHHHHHHHHC----C--
T ss_pred HHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCC-------CCCCEEEcCChHHHHHHHHHHhC----C--
Confidence 3444555544432334444445788999999999999887532 13 68999999999988876541 1
Q ss_pred ccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCC-CCcccHHHHHHHHHHhhhcCCCceEEEEeeccC
Q psy13453 617 QSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTT 695 (764)
Q Consensus 617 ~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~-~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT 695 (764)
++..|++++.+|.++..+++..|.+++.+|.+. ++.+|+++|+++|++. +-+|+.+..++
T Consensus 114 -------------~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~------~~~v~l~~p~n 174 (386)
T 1u08_A 114 -------------NGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSER------TRLVILNTPHN 174 (386)
T ss_dssp -------------TTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTT------EEEEEEESSCT
T ss_pred -------------CCCEEEEeCCCchhHHHHHHHcCCEEEEeecCcccCcCCHHHHHHhhccc------CEEEEEeCCCC
Confidence 112477888899999999999999999999975 5889999999988532 44777778889
Q ss_pred Cccccc---cHHHHHHHHHhcCCEEEEeccccccccccchhhhh--hcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 696 GTCAFD---NLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHL--KRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 696 ~~GaiD---pl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~--l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
.+|.+- ++++|+++|++||+|+++|.+|+.+..-...+... +.+....|.+..++||+++.| +.+|++
T Consensus 175 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~ 248 (386)
T 1u08_A 175 PSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYC 248 (386)
T ss_dssp TTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEE
T ss_pred CCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceEEE
Confidence 999986 57999999999999999999998753311111000 111123589999999999743 236665
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-12 Score=142.82 Aligned_cols=165 Identities=15% Similarity=0.051 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCC
Q psy13453 560 CTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQ 639 (764)
Q Consensus 560 ~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~ 639 (764)
...+..++.+++++++|.+ ..++|+|||+++..++.+... ++..|+++..
T Consensus 86 ~~~~~~~l~~~la~~~g~~-----------~v~~~~ggt~a~~~~~~~~~~-------------------~gd~V~~~~p 135 (398)
T 3a2b_A 86 TLDIHVELEEKLSAYVGKE-----------AAILFSTGFQSNLGPLSCLMG-------------------RNDYILLDER 135 (398)
T ss_dssp CCHHHHHHHHHHHHHHTCS-----------EEEEESSHHHHHHHHHHHSSC-------------------TTCEEEEETT
T ss_pred CcHHHHHHHHHHHHHhCCC-----------cEEEECCHHHHHHHHHHHHhC-------------------CCCEEEECCc
Confidence 3467778889999999863 379999999999888775411 1235788999
Q ss_pred cchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEE
Q psy13453 640 SNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHV 719 (764)
Q Consensus 640 aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHV 719 (764)
+|.+...++...|.+++.+|. +|+++|++++++... + .+.+|+.+..++.+|.+.|+++|+++|++||+|+++
T Consensus 136 ~~~~~~~~~~~~g~~~~~v~~-----~d~~~l~~~l~~~~~-~-~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~ 208 (398)
T 3a2b_A 136 DHASIIDGSRLSFSKVIKYGH-----NNMEDLRAKLSRLPE-D-SAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMV 208 (398)
T ss_dssp CCHHHHHHHHHSSSEEEEECT-----TCHHHHHHHHHTSCS-S-SCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEE
T ss_pred cCHHHHHHHHHcCCceEEeCC-----CCHHHHHHHHHhhcc-C-CceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEE
Confidence 999999999999999998886 689999999976321 1 355777777888899999999999999999999999
Q ss_pred eccccccccc-cchhhhhhcCC-CcccEEEEcCCccCCCCcCceee
Q psy13453 720 DAAYAGSALL-LPEYAHLKRGL-EYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 720 DaA~Gg~~l~-~~~~r~~l~gi-e~aDSit~d~HK~l~~P~~~g~l 763 (764)
|.+|+.+..- ....-....|+ +++|.++.++||+++ |.| |++
T Consensus 209 De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~G-G~~ 252 (398)
T 3a2b_A 209 DDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLA-SLG-GFV 252 (398)
T ss_dssp ECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTC-SSC-EEE
T ss_pred ECCCcccccCCCCCchHhhcCCCcCCeEEEeccccccc-CCC-cEE
Confidence 9999765431 11100111233 246999999999998 656 665
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.1e-12 Score=144.62 Aligned_cols=207 Identities=16% Similarity=0.132 Sum_probs=122.3
Q ss_pred CccccccCCCCChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHH
Q psy13453 523 PQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATL 602 (764)
Q Consensus 523 P~~~~~~~~~~~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl 602 (764)
-.|++|..+.+. +.+ .+.+...+......|..++...+++ +++++++|.+ ..+||+|||+||.
T Consensus 41 ~~ylD~~~~~~~-~~v-~~a~~~~l~~~~~~y~~~~~~~~l~----~~la~~~~~~-----------~v~~t~~gt~A~~ 103 (467)
T 2oqx_A 41 DVFIDLLTDSGT-GAV-TQSMQAAMMRGDEAYSGSRSYYALA----ESVKNIFGYQ-----------YTIPTHQGRGAEQ 103 (467)
T ss_dssp GCSEECSCCSSC-SCC-CHHHHHHTTSCCCCSSSCHHHHHHH----HHHHHHHCCS-----------EEEEEC--CCSHH
T ss_pred CeeEecccCCCc-HHH-HHHHHHHhccCcceeccCchhHHHH----HHHHHHhCcC-----------cEEEcCCcHHHHH
Confidence 357777654443 222 2233344433223455556555554 5667777763 4799999999999
Q ss_pred HHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHH-HHhCCCceEEE------ecC----CCCcccHHHH
Q psy13453 603 VSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKS-AIIGDVPVRQL------RSD----DNGVLRGDAL 671 (764)
Q Consensus 603 ~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kA-a~~lGl~v~~V------p~d----~~g~md~~~L 671 (764)
.|+.+++.......+.. .++ .|+++ ..|+....+ ....|..+... +++ .+|.+|+++|
T Consensus 104 ~al~~~~~~~~~~~G~~---------~~d-~Ii~~-~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~L 172 (467)
T 2oqx_A 104 IYIPVLIKKREQEKGLD---------RSK-MVAFS-NYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGL 172 (467)
T ss_dssp HHHHHHHHHHHHHHCCC---------TTT-CEEEE-SSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHH
T ss_pred HHHHHHhccccccCCCC---------ccc-eEEec-ccccccchhhhhccCcceeeccccccccCCCCCCccCCcCHHHH
Confidence 99999875421110100 001 24455 578654333 33445543332 233 4678999999
Q ss_pred HHHHHHhhhcCCCceEEEEeeccCCc-ccc---ccHHHHHHHHHhcCCEEEEeccccc-ccc--------ccch-hhhhh
Q psy13453 672 LTAVKEDLAKGLIPCCLIATLGTTGT-CAF---DNLEELGPICQEYNIWLHVDAAYAG-SAL--------LLPE-YAHLK 737 (764)
Q Consensus 672 e~~I~~~~~~G~~p~~VvataGTT~~-Gai---Dpl~eIa~i~~~~glwLHVDaA~Gg-~~l--------~~~~-~r~~l 737 (764)
+++|++.. ...+.+|+.+..++.+ |.+ +++++|+++|++||+|||+|+|++. ... .... .....
T Consensus 173 e~~i~~~~--~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~ 250 (467)
T 2oqx_A 173 ERGIEEVG--PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQIT 250 (467)
T ss_dssp HHHHHHHC--GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHH
T ss_pred HHHHHhcC--CCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHh
Confidence 99998631 1124567777666666 553 7899999999999999999988765 221 1110 11110
Q ss_pred -cCCCcccEEEEcCCccCCCCcC
Q psy13453 738 -RGLEYVDSFDFNTHKWLLVNFD 759 (764)
Q Consensus 738 -~gie~aDSit~d~HK~l~~P~~ 759 (764)
...+.+|.+++++||+++.|.|
T Consensus 251 ~~~~~~~d~~~~s~sK~~g~~~G 273 (467)
T 2oqx_A 251 RETYKYADMLAMSAKKDAMVPMG 273 (467)
T ss_dssp HHHGGGCSEEEEESSSTTCCSSC
T ss_pred hhhhccCCeEEEecccccCCCCc
Confidence 0123468999999999998866
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-12 Score=144.38 Aligned_cols=189 Identities=14% Similarity=0.008 Sum_probs=137.0
Q ss_pred HHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccC
Q psy13453 540 GDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSK 619 (764)
Q Consensus 540 ad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~ 619 (764)
.+.+...+......|...+...++++.+.+|+.+..|++.+ ....++|+|||+++..++.+.. .
T Consensus 60 ~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~-------~~~v~~t~g~~~al~~~~~~l~----~----- 123 (406)
T 1xi9_A 60 KEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDIT-------PDDVRVTAAVTEALQLIFGALL----D----- 123 (406)
T ss_dssp HHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCC-------GGGEEEESHHHHHHHHHHHHHC----C-----
T ss_pred HHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCC-------HHHEEEcCChHHHHHHHHHHhC----C-----
Confidence 33344444332234544455688999999999998886542 1468999999999988887641 1
Q ss_pred CCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCC--CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCc
Q psy13453 620 NPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGT 697 (764)
Q Consensus 620 ~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~--~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~ 697 (764)
++..|++++.+|.++..++...|.+++.+|.++ .+.+|+++|+++|++. +-+|+.+..++.+
T Consensus 124 ----------~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~i~~p~npt 187 (406)
T 1xi9_A 124 ----------PGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDR------TKAIAVINPNNPT 187 (406)
T ss_dssp ----------TTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTT------EEEEEEESSCTTT
T ss_pred ----------CCCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhCcC------ceEEEEECCCCCC
Confidence 122578888999999999999999999999874 5679999999998642 4466777888999
Q ss_pred cccc---cHHHHHHHHHhcCCEEEEeccccccccccchh--hhhhcCCCcc-cEEEEcCCccCCCC-cCceee
Q psy13453 698 CAFD---NLEELGPICQEYNIWLHVDAAYAGSALLLPEY--AHLKRGLEYV-DSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 698 GaiD---pl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~--r~~l~gie~a-DSit~d~HK~l~~P-~~~g~l 763 (764)
|.+- ++++|+++|++||+|+++|.+|+++.. .... -..+. ... |-++.++||+++.| +.+|++
T Consensus 188 G~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~-~~~~~~~~~~~--~~~~~i~~~s~sK~~~~~G~r~G~~ 257 (406)
T 1xi9_A 188 GALYDKKTLEEILNIAGEYEIPVISDEIYDLMTY-EGEHISPGSLT--KDVPVIVMNGLSKVYFATGWRLGYM 257 (406)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBS-SSCCCCHHHHC--SSSCEEEEEESTTTTCCGGGCCEEE
T ss_pred CCCcCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHcC--CCceEEEEeccccccCCCccEEEEE
Confidence 9874 599999999999999999999998654 2111 01122 234 66788999999733 236665
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.42 E-value=3e-12 Score=140.22 Aligned_cols=166 Identities=13% Similarity=0.012 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
....++.+.+++++|.+. .+++++||+++..++.+.. . ++..|+++..+|
T Consensus 90 ~~~~~l~~~la~~~g~~~-----------~i~~~sGs~a~~~~~~~~~----~---------------~gd~v~~~~~~~ 139 (401)
T 1fc4_A 90 DSHKELEQKLAAFLGMED-----------AILYSSCFDANGGLFETLL----G---------------AEDAIISDALNH 139 (401)
T ss_dssp HHHHHHHHHHHHHHTCSE-----------EEEESCHHHHHHTTHHHHC----C---------------TTCEEEEETTCC
T ss_pred HHHHHHHHHHHHHhCCCc-----------EEEeCChHHHHHHHHHHHc----C---------------CCCEEEEcchhH
Confidence 455667778888888752 4677888999888766531 1 122577888999
Q ss_pred hhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEec
Q psy13453 642 SSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 721 (764)
Q Consensus 642 ~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDa 721 (764)
.+...++...|..++.+|. +|+++|+++|++...+|..+.+|+.+..++.+|.+.|+++|+++|++||+|+++|.
T Consensus 140 ~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De 214 (401)
T 1fc4_A 140 ASIIDGVRLCKAKRYRYAN-----NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDD 214 (401)
T ss_dssp HHHHHHHHTSCSEEEEECT-----TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEEC
T ss_pred HHHHHHHHHcCCceEEECC-----CCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEEC
Confidence 9999999999999888873 58999999998754444356688888899999999999999999999999999999
Q ss_pred ccccccc-ccchhhhhhcCC-CcccEEEEcCCccCCCCcCceee
Q psy13453 722 AYAGSAL-LLPEYAHLKRGL-EYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 722 A~Gg~~l-~~~~~r~~l~gi-e~aDSit~d~HK~l~~P~~~g~l 763 (764)
+|+.++. ...+......++ ..+|.++.++||+++.+.+ |++
T Consensus 215 ~~~~g~~~~~g~~~~~~~~~~~~~di~~~s~sK~~~~~~g-G~~ 257 (401)
T 1fc4_A 215 SHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASG-GYT 257 (401)
T ss_dssp TTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSC-EEE
T ss_pred cccccccCCCCCccHHHcCCCcCCcEEEecchhhccCCCC-EEE
Confidence 9973332 111111111222 2469999999999966665 665
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.4e-14 Score=158.55 Aligned_cols=195 Identities=9% Similarity=-0.067 Sum_probs=126.4
Q ss_pred ccccccCCCCChHHHHHHHHH---HhhcccCcc---ccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEE-eCC
Q psy13453 524 QFNAYFPTGSSYPSIVGDMLS---GAFGLIGFS---WLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGII-QST 596 (764)
Q Consensus 524 ~~~~~~~~~~~~~~~lad~l~---~~lN~n~~~---~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~Gvf-TsG 596 (764)
.|+.+-.+++.++.++..+.. ...++.... ...++.+.++-.++.+.+++++|.++. ...+| |+|
T Consensus 28 ~yl~~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~--------~evif~t~~ 99 (386)
T 3qm2_A 28 VFNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSN--------YKVLFCHGG 99 (386)
T ss_dssp CEECCSSSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTT--------EEEEEEESC
T ss_pred CccccCCCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCC--------ceEEEEcCC
Confidence 455555455555555544422 223333322 224667778888999999999999752 25788 699
Q ss_pred hHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecC--CCCc-ccHHHHHH
Q psy13453 597 ASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSD--DNGV-LRGDALLT 673 (764)
Q Consensus 597 gTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d--~~g~-md~~~Le~ 673 (764)
||+++..++... ... + ..-+++.++..+|.++ +.++..| .++.||++ ++|. ++++++++
T Consensus 100 ~T~a~n~ai~~l----~~~-----------g-d~v~~~~~~~~~~~~~-~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~ 161 (386)
T 3qm2_A 100 GRGQFAGVPLNL----LGD-----------K-TTADYVDAGYWAASAI-KEAKKYC-APQIIDAKITVDGKRAVKPMREW 161 (386)
T ss_dssp TTHHHHHHHHHH----CTT-----------C-CEEEEEESSHHHHHHH-HHHTTTS-EEEEEECEEEETTEEEECCGGGC
T ss_pred chHHHHHHHHhc----cCC-----------C-CeEEEEeCCHHHHHHH-HHHHHhC-CeEEEecCcccCCCCCCchHHHh
Confidence 999988776533 111 0 0012344445555433 3344568 89999998 7786 89988877
Q ss_pred HHHHhhhcCCCceEEEEeeccCCcccc-ccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCc
Q psy13453 674 AVKEDLAKGLIPCCLIATLGTTGTCAF-DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHK 752 (764)
Q Consensus 674 ~I~~~~~~G~~p~~VvataGTT~~Gai-Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK 752 (764)
+|.++ +.+|+.+..+|.+|.+ +||++|+ +|+++||||+++.+....+- +.+ |-+++++||
T Consensus 162 ~l~~~------t~lV~~~h~et~tG~~i~pi~~i~-----~g~~~~vDa~qs~g~~pidv-----~~~---~~~~~s~hK 222 (386)
T 3qm2_A 162 QLSDN------AAYLHYCPNETIDGIAIDETPDFG-----PEVVVTADFSSTILSAPLDV-----SRY---GVIYAGAQK 222 (386)
T ss_dssp CCCTT------CSCEEECSEETTTTEECCCCCCCC-----TTCCEEEECTTTTTSSCCCG-----GGC---SEEEEETTT
T ss_pred hcCCC------CcEEEEECCcCCcCEecCchhhhc-----CCCEEEEEcccccCCCCCCc-----ccc---CEEEEeccc
Confidence 76554 4478899999999995 9999986 89999999999988776642 222 457799999
Q ss_pred cCCCCcCceeeC
Q psy13453 753 WLLVNFDCSAMW 764 (764)
Q Consensus 753 ~l~~P~~~g~l~ 764 (764)
|++ |.|+|++|
T Consensus 223 ~lG-P~G~g~l~ 233 (386)
T 3qm2_A 223 NIG-PAGLTLVI 233 (386)
T ss_dssp TTC-CTTEEEEE
T ss_pred ccC-CCccEEEE
Confidence 996 99999986
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=5.5e-13 Score=145.27 Aligned_cols=162 Identities=15% Similarity=0.065 Sum_probs=121.3
Q ss_pred HHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHH
Q psy13453 567 VMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEK 646 (764)
Q Consensus 567 v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~k 646 (764)
+.+.+++++|.+++ ..+||+|||+++..++.+... ++..|++++.+|.++..
T Consensus 66 l~~~la~~~~~~~~---------~v~~~~g~~~a~~~~~~~~~~-------------------~gd~Vl~~~~~~~~~~~ 117 (381)
T 1v2d_A 66 LREALAEEFAVEPE---------SVVVTSGATEALYVLLQSLVG-------------------PGDEVVVLEPFFDVYLP 117 (381)
T ss_dssp HHHHHHHHHTSCGG---------GEEEESSHHHHHHHHHHHHCC-------------------TTCEEEEEESCCTTHHH
T ss_pred HHHHHHHhcCCChh---------hEEEcCChHHHHHHHHHHhCC-------------------CCCEEEEcCCCchhHHH
Confidence 44455666777653 589999999999888876521 12257788889999999
Q ss_pred HHHhCCCceEEEecC---CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc---cHHHHHHHHHhcCCEEEEe
Q psy13453 647 SAIIGDVPVRQLRSD---DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD---NLEELGPICQEYNIWLHVD 720 (764)
Q Consensus 647 Aa~~lGl~v~~Vp~d---~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD---pl~eIa~i~~~~glwLHVD 720 (764)
+++..|.+++.+|.+ +++.+|+++|+++|++. +-+|+++..++.+|.+- ++++|+++|++||+|+|+|
T Consensus 118 ~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~D 191 (381)
T 1v2d_A 118 DAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPR------TRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISD 191 (381)
T ss_dssp HHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcCcC------CEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEE
Confidence 999999999999987 56889999999888532 45777788899999984 5999999999999999999
Q ss_pred ccccccccccchhhhhhcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 721 AAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 721 aA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
.+|+++.. .........-....|.+..++||+++.| +.+|++
T Consensus 192 e~~~~~~~-g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~ 234 (381)
T 1v2d_A 192 EVYDELYY-GERPRRLREFAPERTFTVGSAGKRLEATGYRVGWI 234 (381)
T ss_dssp CTTTTCBS-SSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEE
T ss_pred cCcccccc-CCCCCCHHHhcCCCEEEEeechhhcCCcccceEEE
Confidence 99987654 1111111100234699999999998755 236765
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.42 E-value=7.6e-13 Score=150.86 Aligned_cols=172 Identities=16% Similarity=0.128 Sum_probs=107.2
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
..+...++|+.+++++++++|.+.++. +.-+++++||+||+.++.+.. . +...|+
T Consensus 94 G~~~~~~lE~~a~~~~a~l~g~~~~~~------~~~v~~~sGt~An~~al~al~----~---------------pGD~Vl 148 (490)
T 2a7v_A 94 GAEVVDEIELLCQRRALEAFDLDPAQW------GVNVQPYSGSPANLAVYTALL----Q---------------PHDRIM 148 (490)
T ss_dssp ----CTHHHHHHHHHHHHHTTCCTTTE------EEECCCSSHHHHHHHHHHHHC----C---------------SCEECC
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcccC------ceEEeCCchHHHHHHHHHHHc----C---------------CCCEec
Confidence 345556899999999999999875310 124667799999998887541 1 122455
Q ss_pred ecCCcchh------HHH--HHHhCCCce--EEEecC-CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHH
Q psy13453 636 TSDQSNSS------VEK--SAIIGDVPV--RQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLE 704 (764)
Q Consensus 636 ~S~~aH~S------v~k--Aa~~lGl~v--~~Vp~d-~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~ 704 (764)
++..+|.+ +.. ++...|..+ ..+++| ++|.+|+++|++++.+.+ |-+|++ +.+.+|...|++
T Consensus 149 ~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~~~-----~klIi~--~~s~~~~~~dl~ 221 (490)
T 2a7v_A 149 GLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFR-----PRLIIA--GTSAYARLIDYA 221 (490)
T ss_dssp C-------------------------------CCBCTTTCSBCHHHHHHHHHHHC-----CSEEEE--CCSSCCSCCCHH
T ss_pred ccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHHHHHHHhhcC-----CcEEEE--cCCCCCCcccHH
Confidence 66655533 211 334556544 344455 579999999999997642 334543 455567888999
Q ss_pred HHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 705 ELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 705 eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
+|++||++||++||||+||+.++...+.+...+ +.+|.++.++||+++.|.+ |++
T Consensus 222 ~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~---~~aDiv~~S~hK~l~Gp~G-G~i 276 (490)
T 2a7v_A 222 RMREVCDEVKAHLLADMAHISGLVAAKVIPSPF---KHADIVTTTTHKTLRGARS-GLI 276 (490)
T ss_dssp HHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGG---GTCSEEEEESSGGGCSCSC-EEE
T ss_pred HHHHHHHHcCCEEEEccccccccccCCcCCCCC---CCCCEEEECCcccCccccc-hhe
Confidence 999999999999999999876654432222222 3579999999999988876 654
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.41 E-value=2.1e-13 Score=149.71 Aligned_cols=191 Identities=13% Similarity=-0.059 Sum_probs=132.5
Q ss_pred ccccccCCCCChHHHHHHHHHHhh----cccCccc---cCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEE-eC
Q psy13453 524 QFNAYFPTGSSYPSIVGDMLSGAF----GLIGFSW---LSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGII-QS 595 (764)
Q Consensus 524 ~~~~~~~~~~~~~~~lad~l~~~l----N~n~~~~---~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~Gvf-Ts 595 (764)
+.+.|.+++...+.-+-+.+...+ ++....+ ..++.+.++-.++.+.+++++|.++. ...+| |+
T Consensus 5 ~~~~f~pgpt~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~--------~~v~f~t~ 76 (361)
T 3m5u_A 5 RKINFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDD--------YEVLFLQG 76 (361)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTT--------EEEEEESS
T ss_pred ceEeecCCCCCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCC--------ceEEEEcC
Confidence 334555555544443334444332 2323322 23667888999999999999999753 35788 99
Q ss_pred ChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCCCCc--ccHHHHHH
Q psy13453 596 TASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGV--LRGDALLT 673 (764)
Q Consensus 596 GgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~--md~~~Le~ 673 (764)
|||+++..++.... +. . ...+++++..+|..+.. ++..|+.++.|+++.+|. ++++. +
T Consensus 77 ~~T~a~n~~~~~~~----~~--~-----------~~~~i~~~~~~~~~~~~-a~~~G~~v~~~~~~~~g~~~~~~~~-~- 136 (361)
T 3m5u_A 77 GASLQFAMIPMNLA----LN--G-----------VCEYANTGVWTKKAIKE-AQILGVNVKTVASSEESNFDHIPRV-E- 136 (361)
T ss_dssp HHHHHHHHHHHHHC----CS--S-----------CEEEEECSHHHHHHHHH-HHHTTCCEEEEEECTTTTSCSCCCC-C-
T ss_pred cHHHHHHHHHHhcC----CC--C-----------eEEEEeCCHHHHHHHHH-HHHcCCceEEEecccCcCCCcCChh-h-
Confidence 99999887766331 11 0 12357777788865544 455689999999998875 57766 3
Q ss_pred HHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCcc
Q psy13453 674 AVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKW 753 (764)
Q Consensus 674 ~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~ 753 (764)
|.++ +.+|..+..+|.+|.+.|. |++ +|+++||||+++.+....+ ++..|.+++++|||
T Consensus 137 -l~~~------t~lv~~~~~e~~tG~~~~~-----i~~-~~~~~~vD~~q~~g~~~id--------~~~~d~~~~s~~K~ 195 (361)
T 3m5u_A 137 -FSDN------ADYAYICSNNTIYGTQYQN-----YPK-TKTPLIVDASSDFFSRKVD--------FSNIALFYGGVQKN 195 (361)
T ss_dssp -CCTT------SSEEEEESEETTTTEECSS-----CCC-CSSCEEEECGGGTTSSCCC--------CTTEEEEEEETTTT
T ss_pred -cCCC------CCEEEEeCCCCCcceeCCc-----ccc-cCCEEEEEcccccCCCCCC--------cccCCEEEEechhc
Confidence 5443 4488889999999998541 454 4999999999998776654 22359999999999
Q ss_pred CCCCcCceeeC
Q psy13453 754 LLVNFDCSAMW 764 (764)
Q Consensus 754 l~~P~~~g~l~ 764 (764)
++ |.|+|++|
T Consensus 196 ~g-p~G~g~l~ 205 (361)
T 3m5u_A 196 AG-ISGLSCIF 205 (361)
T ss_dssp SS-CTTCEEEE
T ss_pred cC-CCccEEEE
Confidence 96 99999986
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.3e-12 Score=141.13 Aligned_cols=168 Identities=15% Similarity=0.071 Sum_probs=116.9
Q ss_pred cCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEE
Q psy13453 555 LSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVA 634 (764)
Q Consensus 555 ~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi 634 (764)
...+...++|+ .+++++|.+ ..+|+++||+||..++.+++... . . +..++..|
T Consensus 31 ~~~~~~~~l~~----~la~~~~~~-----------~~i~~~sGt~a~~~al~~~~~~~--~---~-------~~~~g~~V 83 (390)
T 3b8x_A 31 TMGEYVKQYET----QFAKTFGSK-----------YAVMVSSGSTANLLMIAALFFTK--K---P-------RLKKGDEI 83 (390)
T ss_dssp SSCHHHHHHHH----HHHHHHTCS-----------EEEEESCHHHHHHHHHHHTTSSS--S---C-------SCCTTCEE
T ss_pred CCChHHHHHHH----HHHHHHCCC-----------cEEEECCHHHHHHHHHHHHHhhh--h---c-------CCCCcCEE
Confidence 34555555554 566666764 36899999999999887663110 0 0 01123468
Q ss_pred EecCCcchhHHHHHHhCCCceEEEecCCC-CcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhc
Q psy13453 635 YTSDQSNSSVEKSAIIGDVPVRQLRSDDN-GVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEY 713 (764)
Q Consensus 635 ~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~-g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~ 713 (764)
+++..+|.+...++...|..++.+|++++ +.+|+++|+++|+++ +.+|+++ +.+|..+|+++|+++|++|
T Consensus 84 i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~------~~~v~~~---~~~g~~~~~~~i~~l~~~~ 154 (390)
T 3b8x_A 84 IVPAVSWSTTYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVTDS------TKAILTV---NLLGNPNNFDEINKIIGGR 154 (390)
T ss_dssp EEESSSCHHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHCCTT------EEEEEEE---CGGGCCCCHHHHHHHHTTS
T ss_pred EECCCCcHHHHHHHHHcCCEEEEEecCccccCcCHHHHHHHhCcC------CeEEEEE---CCccChhhHHHHHHHHHHc
Confidence 88999999999999999999999999865 999999999998653 3355554 3578899999999999999
Q ss_pred CCEEEEeccccccccccchhhhhhcCC-CcccEEEEcCCccCCCCcCceee
Q psy13453 714 NIWLHVDAAYAGSALLLPEYAHLKRGL-EYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 714 glwLHVDaA~Gg~~l~~~~~r~~l~gi-e~aDSit~d~HK~l~~P~~~g~l 763 (764)
|+|+|+|+||+.+..... +. -|. ....+++...+|.++.+.+ |++
T Consensus 155 ~~~li~D~a~~~g~~~~~--~~--~g~~~~~~~~s~~~~k~~~~g~g-G~~ 200 (390)
T 3b8x_A 155 DIILLEDNCESMGATFNN--KC--AGTFGLMGTFSSFYSNHIATMEG-GCI 200 (390)
T ss_dssp CCEEEEECTTCTTCEETT--EE--TTSSSSEEEEECCTTSSSCSSSC-EEE
T ss_pred CCEEEEECcCcccCEECC--cc--cccccceEEEEccCCCCCccCCc-eEE
Confidence 999999999996544321 11 121 1234555444444555655 655
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-12 Score=145.23 Aligned_cols=230 Identities=12% Similarity=0.106 Sum_probs=147.9
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecC---CCCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcc-cccccCchhhhc----
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGL---PDSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTL-HQDIQSLNAPVS---- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpv---d~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~-~G~iDpi~~ia~---- 90 (764)
.|-|+.||+.++|+.+ +.|+. ++...||+++||++|++... ..++ |.+..|+. .|++|||+++++
T Consensus 171 ~HKSv~kAliL~Gl~P---v~V~p~~d~~~~~id~e~le~aI~e~ga---~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~ 244 (501)
T 3hl2_A 171 DQKSCFKSMITAGFEP---VVIENVLEGDELRTDLKAVEAKVQELGP---DCILCIHSTTSCFAPRVPDRLEELAVICAN 244 (501)
T ss_dssp CCHHHHHHHHHTTCEE---EEECEEEETTEEEECHHHHHHHHHHHCG---GGEEEEEEECSCCTTBCCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCeE---EEEeeeecccccCCCHHHHHHHHHhcCC---CcEEEEEecCCCCCCcccccHHHHHHHHHH
Confidence 6999999999999999 77766 56789999999999998621 2333 54444444 467799999997
Q ss_pred -CCCceeccccccc-------------------------------cce-eeeecCCCccccccccccccCCcccCCCC-c
Q psy13453 91 -NGPLKVGGVLRRV-------------------------------YSS-CLVPRGQKSLRTTVLFHFLFQHWQIPLGR-R 136 (764)
Q Consensus 91 -~~wlHVDa~l~~~-------------------------------y~s-~ll~rd~~~l~~~~s~~~d~~d~tle~SR-r 136 (764)
++|+|||.+++.. .++ +++.++++.+... .....|.| +
T Consensus 245 ~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD~vVqS~HK~llvpIGG~ii~~~d~e~l~~~--------~~~yPGr~S~ 316 (501)
T 3hl2_A 245 YDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEI--------SKMYPGRASA 316 (501)
T ss_dssp HTCCEEEECTTCTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHCCCSSCEEEEESCHHHHHHH--------HHTSCSCBCS
T ss_pred cCCeEEEeCcchhhhhhhhhhHHHHHhcCCCcEEEecccccceeecCceEEEeCCHHHHHHH--------HHhCCCCCCC
Confidence 9999999964211 112 3334444333221 11223445 7
Q ss_pred ccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCC---CeEEeCCCCceeEEEEeeccccccccccccCccCCcc
Q psy13453 137 FRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDD---RFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDN 213 (764)
Q Consensus 137 ~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p---~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d 213 (764)
+.++++|++++++|++||+++++++++++++|+++|++.. +-+++..| .|-+.+-..-.... .+...
T Consensus 317 Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~~~-~n~is~a~tl~~~~---------~~~~~ 386 (501)
T 3hl2_A 317 SPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTP-HNPISLAMTLKTLD---------EHRDK 386 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCCCT-TCSSEEEEECTTSC---------TTTSC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCCC-CCceeEEEeccccc---------ccccc
Confidence 8888999999999999999999999999999999999953 46666555 22233322111110 00111
Q ss_pred HHHHHHHHHHHhcCc---EEEEece---eCC--------------eeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHcc
Q psy13453 214 DLNKAVYDRIIARKV---IYIVKGS---FQD--------------RLFMRFAICSSQTEESDVQLGWNEIRTATEEVLRG 273 (764)
Q Consensus 214 ~~n~~L~~~L~~~G~---~~vs~t~---l~g--------------~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~~ 273 (764)
.+ ..|--.|..++. -++.... +.| ..+|-+ .+-.-++++||+.|++.++++..++.++
T Consensus 387 ~~-t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~~~~yl~~-a~aiG~~~~~v~~~~~~l~~~~~~~~~~ 464 (501)
T 3hl2_A 387 AV-TQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNA-ASAIGMKMQDVDLFIKRLDRCLKAVRKE 464 (501)
T ss_dssp HH-HHHHHHHHHTTCCSCEEECTTCCEEETTEEESSTTTTSSCCSSCEEEE-ECCTTCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred cH-HHHHHHHHhcCCCcceeecCCCceEECCeeecCcccCCCCCCchHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 12 245555555443 2222111 111 123433 3455678999999999999999888766
Q ss_pred CC
Q psy13453 274 KS 275 (764)
Q Consensus 274 ~~ 275 (764)
..
T Consensus 465 ~~ 466 (501)
T 3hl2_A 465 RS 466 (501)
T ss_dssp --
T ss_pred hc
Confidence 53
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-12 Score=144.38 Aligned_cols=154 Identities=12% Similarity=0.028 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
....++.+.+++++|.+ ..+++++||+||..++.+.. . ++..|+++..+|
T Consensus 65 ~~~~~l~~~la~~~g~~-----------~~i~~~sG~~a~~~~l~~~~----~---------------~gd~vl~~~~~~ 114 (398)
T 1gc0_A 65 PTLNLLEARMASLEGGE-----------AGLALASGMGAITSTLWTLL----R---------------PGDEVLLGNTLY 114 (398)
T ss_dssp HHHHHHHHHHHHHHTCS-----------EEEEESSHHHHHHHHHHHHC----C---------------TTCEEEEESSCC
T ss_pred hHHHHHHHHHHHHhCCC-----------cEEEECCHHHHHHHHHHHHh----c---------------CCCEEEEeCCCc
Confidence 34445556777888764 25788888999988887651 1 122578889999
Q ss_pred hhHHHHH----HhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEE
Q psy13453 642 SSVEKSA----IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWL 717 (764)
Q Consensus 642 ~Sv~kAa----~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwL 717 (764)
.+....+ ...|+.++.++.+ |+++|+++|+++ +.+|+++..++.+|.+.|+++|+++|++||+|+
T Consensus 115 ~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~l 183 (398)
T 1gc0_A 115 GCTFAFLHHGIGEFGVKLRHVDMA-----DLQALEAAMTPA------TRVIYFESPANPNMHMADIAGVAKIARKHGATV 183 (398)
T ss_dssp SHHHHHHHHTGGGGTCEEEEECTT-----CHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEE
T ss_pred hhHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcCCC------CeEEEEECCCCCCcccccHHHHHHHHHHcCCEE
Confidence 9887776 4568888888764 799999988643 558888899999999999999999999999999
Q ss_pred EEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcC--ceee
Q psy13453 718 HVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD--CSAM 763 (764)
Q Consensus 718 HVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~--~g~l 763 (764)
|+|++|+.+....+. -. .+|.++.++||+++.|.+ +|++
T Consensus 184 i~D~~~~~~~~~~~~----~~---~~d~~~~S~sK~~~~~~~~~~G~l 224 (398)
T 1gc0_A 184 VVDNTYCTPYLQRPL----EL---GADLVVHSATKYLSGHGDITAGIV 224 (398)
T ss_dssp EEECTTTHHHHCCGG----GG---TCSEEEEETTTTTTCSSSCCCEEE
T ss_pred EEECCCcccccCCch----hh---CceEEEECCccccCCCCCCeEEEE
Confidence 999999976543321 11 369999999999999876 5765
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-12 Score=140.65 Aligned_cols=189 Identities=12% Similarity=0.059 Sum_probs=134.8
Q ss_pred HHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhcc
Q psy13453 539 VGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQS 618 (764)
Q Consensus 539 lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~ 618 (764)
+.+.+...+......|.. ...++++++.+++++++|.+.+ ....+||+|||+++..++.+...
T Consensus 50 v~~a~~~~~~~~~~~y~~--~~~~~~~~l~~~l~~~~g~~~~-------~~~v~~~~g~~~a~~~~~~~~~~-------- 112 (391)
T 4dq6_A 50 IIDSLKNRLEQEIYGYTT--RPDSYNESIVNWLYRRHNWKIK-------SEWLIYSPGVIPAISLLINELTK-------- 112 (391)
T ss_dssp HHHHHHHHHTTCCCCCBC--CCHHHHHHHHHHHHHHHCCCCC-------GGGEEEESCHHHHHHHHHHHHSC--------
T ss_pred HHHHHHHHHhCCCCCCCC--CCHHHHHHHHHHHHHHhCCCCc-------HHHeEEcCChHHHHHHHHHHhCC--------
Confidence 334444445433333333 3478999999999999995321 13689999999999888775421
Q ss_pred CCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecC--C--CCcccHHHHHHHHHHhhhcCCCceEEEEeecc
Q psy13453 619 KNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSD--D--NGVLRGDALLTAVKEDLAKGLIPCCLIATLGT 694 (764)
Q Consensus 619 ~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d--~--~g~md~~~Le~~I~~~~~~G~~p~~VvataGT 694 (764)
++..|++...+|.+...++...|.+++.+|.+ + ++.+|+++|+++|++ +-+|+.+..+
T Consensus 113 -----------~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-------~~~v~i~~p~ 174 (391)
T 4dq6_A 113 -----------ANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD-------VKLFILCNPH 174 (391)
T ss_dssp -----------TTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT-------EEEEEEESSB
T ss_pred -----------CCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc-------CCEEEEECCC
Confidence 11257888999999999999999999999987 3 346999999999865 3477778889
Q ss_pred CCcccc---ccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCC----cccEEEEcCCccCCCC-cCceee
Q psy13453 695 TGTCAF---DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLE----YVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 695 T~~Gai---Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie----~aDSit~d~HK~l~~P-~~~g~l 763 (764)
+.+|.+ +++++|+++|++||+|+++|.+|+++..--... ..+..+. ...-+..++||+++.| ..+|++
T Consensus 175 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~-~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~ 250 (391)
T 4dq6_A 175 NPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKH-IPMASISKEFEKNTITCMAPTKTFNIAGLQSSYV 250 (391)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCC-CCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEE
T ss_pred CCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCc-cCHHHcCccccCcEEEEEechhhccCcccceEEE
Confidence 999999 899999999999999999999998754221100 0111110 1136678999998633 455554
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-13 Score=151.28 Aligned_cols=194 Identities=10% Similarity=-0.117 Sum_probs=135.8
Q ss_pred ccccCCCCChHHHHHHHHHHhh---cccCcc---ccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEE-eCChH
Q psy13453 526 NAYFPTGSSYPSIVGDMLSGAF---GLIGFS---WLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGII-QSTAS 598 (764)
Q Consensus 526 ~~~~~~~~~~~~~lad~l~~~l---N~n~~~---~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~Gvf-TsGgT 598 (764)
++..++.+.++.++..+..... ++.... ...++.+.++-+++++.+++++|.++. ...+| |+|||
T Consensus 16 ~n~at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~--------~evif~t~~~T 87 (377)
T 3e77_A 16 ENLYFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDN--------YKVIFLQGGGC 87 (377)
T ss_dssp CCEECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTT--------EEEEEESSHHH
T ss_pred ccccccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCC--------CeEEEEcCchH
Confidence 4555566666676655554433 333332 334678889999999999999999753 35788 58999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhH--HHHHHhCCCceEEEecCCCCcccHHHHHHHHH
Q psy13453 599 EATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV--EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVK 676 (764)
Q Consensus 599 eANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv--~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~ 676 (764)
+++..++..... +. +...+.+....|++. .+.++..|..++.+|++.++..++++++.++.
T Consensus 88 ~a~n~a~~~l~~---~~--------------~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~i~ 150 (377)
T 3e77_A 88 GQFSAVPLNLIG---LK--------------AGRCADYVVTGAWSAKAAEEAKKFGTINIVHPKLGSYTKIPDPSTWNLN 150 (377)
T ss_dssp HHHHHHHHHHGG---GS--------------TTCEEEECCCSHHHHHHHHHHTTTSEEEECSCCCSSSCSCCCGGGCCCC
T ss_pred HHHHHHHHhccC---CC--------------CCCeEEEEECCHHHHHHHHHHHHhCCceEEeccCCCcCCCCChHHhccC
Confidence 998777653311 10 011244455556653 23344467777888888777788887765554
Q ss_pred HhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCC
Q psy13453 677 EDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLV 756 (764)
Q Consensus 677 ~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~ 756 (764)
++ +.+|..+..+|.+|.+.|+ ||+++|+++||||+++.+....+- +.+ |-+++++|||++
T Consensus 151 ~~------t~lV~~~h~et~tG~~~pi-----i~~~~~~~~~vD~~q~~g~~~id~-----~~~---~~~~~s~~K~~g- 210 (377)
T 3e77_A 151 PD------ASYVYYCANETVHGVEFDF-----IPDVKGAVLVCDMSSNFLSKPVDV-----SKF---GVIFAGAQKNVG- 210 (377)
T ss_dssp TT------CSCEEEESEETTTTEECSS-----CCCCTTCCEEEECTTTTTSSCCCG-----GGC---SEEEEEGGGTTS-
T ss_pred CC------ccEEEEeCccCchheEchh-----hhccCCCEEEEEcccccCCCCCch-----hhc---CEEEEecccccC-
Confidence 43 4478899999999999999 588999999999999988776642 122 458999999996
Q ss_pred CcCceeeC
Q psy13453 757 NFDCSAMW 764 (764)
Q Consensus 757 P~~~g~l~ 764 (764)
|.|+|++|
T Consensus 211 p~G~g~l~ 218 (377)
T 3e77_A 211 SAGVTVVI 218 (377)
T ss_dssp CTTCEEEE
T ss_pred CCccEEEE
Confidence 99999986
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.2e-12 Score=141.76 Aligned_cols=169 Identities=14% Similarity=0.076 Sum_probs=113.7
Q ss_pred cCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEE
Q psy13453 555 LSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVA 634 (764)
Q Consensus 555 ~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi 634 (764)
...+....+|+.+.+++++++|.+.+ -+++++||++|..++.+.. . +...|
T Consensus 64 ~~~~~~~~~~~~~~~~la~~~g~~~~----------~i~~~sGt~a~~~~~~~~~----~---------------~gd~v 114 (417)
T 3n0l_A 64 GGCEFVDEIETLAIERCKKLFNCKFA----------NVQPNSGSQANQGVYAALI----N---------------PGDKI 114 (417)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTCSEE----------ECCCSSHHHHHHHHHHHHS----C---------------TTCEE
T ss_pred ccchHHHHHHHHHHHHHHHHhCCCCc----------ceEeccHHHHHHHHHHHhc----C---------------CCCEE
Confidence 34466778999999999999998652 2445556999988876551 1 12247
Q ss_pred EecCCcchhHHH---HHHhCCC--ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHH
Q psy13453 635 YTSDQSNSSVEK---SAIIGDV--PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPI 709 (764)
Q Consensus 635 ~~S~~aH~Sv~k---Aa~~lGl--~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i 709 (764)
+++..+|.+... .....|. .++.+++++++.+|+++|+++|++. .+-+|+.+.++ .|.+.|+++|+++
T Consensus 115 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~--~G~~~~l~~i~~l 187 (417)
T 3n0l_A 115 LGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKE-----KPKLIVCGASA--YARVIDFAKFREI 187 (417)
T ss_dssp EEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHHH-----CCSEEEECCSS--CCSCCCHHHHHHH
T ss_pred EecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHhc-----CCeEEEECCcc--cCccCCHHHHHHH
Confidence 778888877654 3333444 4566677778899999999999753 13366666555 4999999999999
Q ss_pred HHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 710 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 710 ~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
|++||+|+++|.||+.+......+... +..+|.++.++||++..|.+ |++
T Consensus 188 ~~~~~~~li~Dea~~~g~~~~~~~~~~---~~~~di~~~s~sK~l~g~~~-G~~ 237 (417)
T 3n0l_A 188 ADEIGAYLFADIAHIAGLVVAGEHPSP---FPYAHVVSSTTHKTLRGPRG-GII 237 (417)
T ss_dssp HHHHTCEEEEECTTTHHHHHTTSSCCC---TTTCSEEEEESSTTTCSCSC-EEE
T ss_pred HHHcCCEEEEECccchhhhhcccCCCc---cccceEEEeeCccccCCCCe-eEE
Confidence 999999999999986555433222211 22469999999999977764 654
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-11 Score=134.78 Aligned_cols=172 Identities=14% Similarity=0.008 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCC
Q psy13453 560 CTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQ 639 (764)
Q Consensus 560 ~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~ 639 (764)
..++++.+.+|+.+.+|++.+ ....++|+|+|+++..++.+.. . ++..|++.+.
T Consensus 71 ~~~l~~~la~~l~~~~g~~~~-------~~~v~~~~G~~~al~~~~~~l~----~---------------~gd~Vl~~~~ 124 (369)
T 3cq5_A 71 AVELRDELAAYITKQTGVAVT-------RDNLWAANGSNEILQQLLQAFG----G---------------PGRTALGFQP 124 (369)
T ss_dssp CHHHHHHHHHHHHHHHCCCCC-------GGGEEEESHHHHHHHHHHHHHC----S---------------TTCEEEEEES
T ss_pred HHHHHHHHHHhhhhcccCCCC-------hHhEEECCChHHHHHHHHHHhc----C---------------CCCEEEEcCC
Confidence 368999999999998776521 1357899999999877766431 1 1125778889
Q ss_pred cchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEE
Q psy13453 640 SNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHV 719 (764)
Q Consensus 640 aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHV 719 (764)
+|.++..++...|.+++.+|.++++.+|+++|++++++. .+-+|+.+..++.+|.+-|++++.++|+.+++|+++
T Consensus 125 ~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~ 199 (369)
T 3cq5_A 125 SYSMHPILAKGTHTEFIAVSRGADFRIDMDVALEEIRAK-----QPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIV 199 (369)
T ss_dssp SCTHHHHHHHHTTCEEEEEECCTTSSCCHHHHHHHHHHH-----CCSEEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEE
T ss_pred ChHHHHHHHHHcCCEEEEecCCcCCCCCHHHHHHHhhcc-----CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999888899999999999762 134666788899999999999999999999999999
Q ss_pred eccccccccccchhhhhhcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 720 DAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 720 DaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
|.+|+.+..- +......+.....+.+..++||+++.| +.+|++
T Consensus 200 De~~~~~~~~-~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~ 243 (369)
T 3cq5_A 200 DEAYAEFSPS-PSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYF 243 (369)
T ss_dssp ECTTGGGCCS-CCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEE
T ss_pred ECCchhhcCC-cchHHHHhhCCCCEEEEEechHhcCCcccceEEE
Confidence 9999986532 111222222211358889999999754 235655
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-12 Score=143.58 Aligned_cols=168 Identities=13% Similarity=0.105 Sum_probs=118.8
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
..+...++|+.+.+++++++|.+.. -+++++||+++..++.++.. ++..|+
T Consensus 63 ~~~~~~~l~~~~r~~la~~~g~~~~----------~i~~~sGt~a~~~a~~~~~~-------------------~gd~Vl 113 (405)
T 2vi8_A 63 GCEYVDIVEELARERAKQLFGAEHA----------NVQPHSGAQANMAVYFTVLE-------------------HGDTVL 113 (405)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSEE----------ECCCSSHHHHHHHHHHHHCC-------------------TTCEEE
T ss_pred cchHHHHHHHHHHHHHHHHhCCCce----------EEEecCcHHHHHHHHHHhcC-------------------CCCEEE
Confidence 4467788999999999999998642 34455669999988876521 112466
Q ss_pred ecCCcchhHHH-H--HHhCCC--ceEEEecC-CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHH
Q psy13453 636 TSDQSNSSVEK-S--AIIGDV--PVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPI 709 (764)
Q Consensus 636 ~S~~aH~Sv~k-A--a~~lGl--~v~~Vp~d-~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i 709 (764)
++..+|.+... + +...|. .++.++++ +++.+|+++|+++|++.. +-+|++ ..++.|...++++|+++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~-----~~~v~~--~~~~~~~~~~l~~i~~l 186 (405)
T 2vi8_A 114 GMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHR-----PKLIVA--AAAAYPRIIDFAKFREI 186 (405)
T ss_dssp EECGGGTCCTTTTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHC-----CSEEEE--CCSSCCSCCCHHHHHHH
T ss_pred EecccccchhcccchhhhccceeEEEecccccccCCcCHHHHHHHHHhcC-----CeEEEE--eCCCCCccCCHHHHHHH
Confidence 77778877643 1 122333 66667765 578999999999997631 234544 23456788899999999
Q ss_pred HHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 710 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 710 ~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
|++||+|+|+|++|+.+....+... .+++.+|.++.++||+++.|.| |++
T Consensus 187 ~~~~~~~li~Dea~~~g~~~~~~~~---~~~~~~di~~~s~sK~~~g~~g-G~~ 236 (405)
T 2vi8_A 187 ADEVGAYLMVDMAHIAGLVAAGLHP---NPVPYAHFVTTTTHKTLRGPRG-GMI 236 (405)
T ss_dssp HHHHTCEEEEECTTTHHHHHTTSSC---CSTTTCSEEEEESSSTTCCCSC-EEE
T ss_pred HHHcCCEEEEEccccccccccCcCC---CccccCCEEEEeccccCCCCCC-eEE
Confidence 9999999999999985433222111 2234679999999999988888 775
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.1e-12 Score=141.78 Aligned_cols=183 Identities=12% Similarity=0.049 Sum_probs=130.9
Q ss_pred ccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCc
Q psy13453 552 FSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631 (764)
Q Consensus 552 ~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~ 631 (764)
..|.......++++.+.+|+.+.+|++-+ ....+||+|||+++..++.+... .. +.
T Consensus 76 ~~y~~~~g~~~lr~~la~~~~~~~g~~~~-------~~~i~~t~g~t~al~~~~~~l~~--~~---------------~g 131 (437)
T 3g0t_A 76 SIYPNLDGLPELKQEASRFAKLFVNIDIP-------ARACVPTVGSMQGCFVSFLVANR--TH---------------KN 131 (437)
T ss_dssp GSCCCTTCCHHHHHHHHHHHHHHHCCCCC-------GGGEEEESHHHHHHHHHHHHHTT--SC---------------TT
T ss_pred cCCCCCCChHHHHHHHHHHHHHhhCCCCC-------cccEEEeCCHHHHHHHHHHHHhc--CC---------------CC
Confidence 33444444578999999999988887532 24689999999999888765420 00 11
Q ss_pred e--EEEecCCcchhHHHHHHhCCCceEEEecCC-CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc---HHH
Q psy13453 632 L--VAYTSDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN---LEE 705 (764)
Q Consensus 632 ~--vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~-~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp---l~e 705 (764)
. .|+++.-+|.++..++...|.+++.+|+++ .+.+|+++|+++|+.. .+-+|+.+..++.+|.+-+ +++
T Consensus 132 d~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~-----~~~~v~l~~p~nptG~~~~~~~l~~ 206 (437)
T 3g0t_A 132 REYGTLFIDPGFNLNKLQCRILGQKFESFDLFEYRGEKLREKLESYLQTG-----QFCSIIYSNPNNPTWQCMTDEELRI 206 (437)
T ss_dssp CSCCEEEEESCCHHHHHHHHHHTCCCEEEEGGGGCTTHHHHHHHHHHTTT-----CCCEEEEESSCTTTCCCCCHHHHHH
T ss_pred CccEEEEeCCCcHhHHHHHHHcCCEEEEEeecCCCCccCHHHHHHHHhcC-----CceEEEEeCCCCCCCCcCCHHHHHH
Confidence 1 477788999999999999999999999974 4579999999998421 2446777788999998865 777
Q ss_pred HHHHHHhcCCEEEEeccccccccccchhh-------hhhcCCCcccEEEEcCCccCC-CCcCceee
Q psy13453 706 LGPICQEYNIWLHVDAAYAGSALLLPEYA-------HLKRGLEYVDSFDFNTHKWLL-VNFDCSAM 763 (764)
Q Consensus 706 Ia~i~~~~glwLHVDaA~Gg~~l~~~~~r-------~~l~gie~aDSit~d~HK~l~-~P~~~g~l 763 (764)
|+++|++||+|+++|.+|+.+..-....- ..+.+....+.+..++||+++ ....+|++
T Consensus 207 i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~ 272 (437)
T 3g0t_A 207 IGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQRIGVL 272 (437)
T ss_dssp HHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGGCCEEE
T ss_pred HHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCccceeEEE
Confidence 89999999999999999986433210000 111222234688889999987 33446654
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=3.1e-12 Score=141.26 Aligned_cols=153 Identities=14% Similarity=0.044 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcch
Q psy13453 563 LEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNS 642 (764)
Q Consensus 563 lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~ 642 (764)
.-.++.+.+++++|.+ ..++|+|||+||..++.+.. . ++..|+++..+|.
T Consensus 67 ~~~~l~~~la~~~g~~-----------~~~~~~sGt~A~~~al~~~~----~---------------~gd~Vi~~~~~y~ 116 (392)
T 3qhx_A 67 TRTALEAALAAVEDAA-----------FGRAFSSGMAAADCALRAML----R---------------PGDHVVIPDDAYG 116 (392)
T ss_dssp HHHHHHHHHHHHTTCS-----------EEEEESSHHHHHHHHHHHHC----C---------------TTCEEEEETTCCH
T ss_pred HHHHHHHHHHHHhCCC-----------cEEEECCHHHHHHHHHHHHh----C---------------CCCEEEEeCCCcc
Confidence 3445566788888764 36899999999988887541 1 1225788899998
Q ss_pred hHHHHH----HhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEE
Q psy13453 643 SVEKSA----IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLH 718 (764)
Q Consensus 643 Sv~kAa----~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLH 718 (764)
+....+ ...|+.++.+|.+ |+++|+++|+++ +.+|++...++.+|.+.|+++|+++|++||+|+|
T Consensus 117 ~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li 185 (392)
T 3qhx_A 117 GTFRLIDKVFTGWNVEYTPVALA-----DLDAVRAAIRPT------TRLIWVETPTNPLLSIADIAGIAQLGADSSAKVL 185 (392)
T ss_dssp HHHHHHHHTGGGGTCEEEEECTT-----CHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEE
T ss_pred hHHHHHHHHHHhcCcEEEEeCCC-----CHHHHHHhhCCC------CeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEE
Confidence 877665 4568888888875 899999998653 4588888899999999999999999999999999
Q ss_pred EeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcC--ceee
Q psy13453 719 VDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD--CSAM 763 (764)
Q Consensus 719 VDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~--~g~l 763 (764)
+|.+|+.+....+. . . .+|.++.++||+++.+.+ +|++
T Consensus 186 ~D~~~~~~~~~~~~-~---~---~~di~~~S~sK~lg~~g~~~~G~v 225 (392)
T 3qhx_A 186 VDNTFASPALQQPL-S---L---GADVVLHSTTKYIGGHSDVVGGAL 225 (392)
T ss_dssp EECTTTCTTTCCGG-G---G---TCSEEEEETTTTTTCSSCCCCEEE
T ss_pred EECCCcccccCChH-H---h---CCcEEEEcCccccCCCCCceEEEE
Confidence 99999865433221 1 1 359999999999987643 6655
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.37 E-value=4e-12 Score=140.90 Aligned_cols=172 Identities=10% Similarity=0.031 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
.++++++.+|+++.+|++.+ ....+||+|+++||..++.+++. +...|++...+
T Consensus 99 ~~l~~~l~~~l~~~~g~~~~-------~~~v~~~~g~~ea~~~a~~~~~~-------------------~gd~Vi~~~~~ 152 (421)
T 3l8a_A 99 DDLYQAVIDWERKEHDYAVV-------KEDILFIDGVVPAISIALQAFSE-------------------KGDAVLINSPV 152 (421)
T ss_dssp HHHHHHHHHHHHHHHCCCCC-------GGGEEEESCHHHHHHHHHHHHSC-------------------TEEEEEEEESC
T ss_pred HHHHHHHHHHHHHHhCCCCC-------HHHEEEcCCHHHHHHHHHHHhcC-------------------CCCEEEECCCC
Confidence 78999999999999996432 14689999999999998876521 12357788899
Q ss_pred chhHHHHHHhCCCceEEEecC-C--CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccHHHHHHHHHhcC
Q psy13453 641 NSSVEKSAIIGDVPVRQLRSD-D--NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLEELGPICQEYN 714 (764)
Q Consensus 641 H~Sv~kAa~~lGl~v~~Vp~d-~--~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~eIa~i~~~~g 714 (764)
|.++..++...|.+++.+|.+ . ++.+|+++|+++|++. .+.+|+.+..++.+|.+ +++++|+++|++||
T Consensus 153 y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~-----~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~ 227 (421)
T 3l8a_A 153 YYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDN-----NVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHG 227 (421)
T ss_dssp CHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHT-----TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhcc-----CCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcC
Confidence 999999999999999999975 3 3479999999999742 24477778889999999 89999999999999
Q ss_pred CEEEEeccccccccccchhhhhh---cCCCcccEEEEcCCccCCC-CcCceee
Q psy13453 715 IWLHVDAAYAGSALLLPEYAHLK---RGLEYVDSFDFNTHKWLLV-NFDCSAM 763 (764)
Q Consensus 715 lwLHVDaA~Gg~~l~~~~~r~~l---~gie~aDSit~d~HK~l~~-P~~~g~l 763 (764)
++|++|.+|+++..-...+.... ......+-+..+++|+++. .+.+|++
T Consensus 228 ~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~ 280 (421)
T 3l8a_A 228 VILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFA 280 (421)
T ss_dssp CEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEE
T ss_pred CEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeE
Confidence 99999999987543211111110 1111235778899999973 3555654
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-11 Score=134.52 Aligned_cols=160 Identities=14% Similarity=0.038 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
....++.+.+++++|.+. .+++++||+++..++.+.. . ++..|+++...|
T Consensus 84 ~~~~~l~~~la~~~g~~~-----------~i~~~sGt~a~~~~~~~~~----~---------------~gd~v~~~~~~~ 133 (384)
T 1bs0_A 84 VVHQALEEELAEWLGYSR-----------ALLFISGFAANQAVIAAMM----A---------------KEDRIAADRLSH 133 (384)
T ss_dssp HHHHHHHHHHHHHHTCSE-----------EEEESCHHHHHHHHHHHHC----C---------------TTCEEEEETTCC
T ss_pred HHHHHHHHHHHHHhCCCc-----------EEEeCCcHHHHHHHHHHhC----C---------------CCcEEEEccccc
Confidence 455667778888888753 5777888999988776431 1 122578889999
Q ss_pred hhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEec
Q psy13453 642 SSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 721 (764)
Q Consensus 642 ~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDa 721 (764)
.+...+++..|.+++.+|. +|+++|+++|++... .+.+|+....++.+|.+.|+++|+++|++||+|+++|.
T Consensus 134 ~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~---~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De 205 (384)
T 1bs0_A 134 ASLLEAASLSPSQLRRFAH-----NDVTHLARLLASPCP---GQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDD 205 (384)
T ss_dssp HHHHHHHHTSSSEEEEECT-----TCHHHHHHHHHSCCS---SCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHcCCCEEEeCC-----CCHHHHHHHHHhcCC---CCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEEC
Confidence 9999999999999988884 579999999875321 24577777788899999999999999999999999999
Q ss_pred cccccccc-cch-hhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 722 AYAGSALL-LPE-YAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 722 A~Gg~~l~-~~~-~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
+|+.+... ... ....+ + ...|.++.++||+++ |.+ |++
T Consensus 206 ~~~~~~~~~~~~~~~~~~-~-~~~di~~~s~sK~~~-~~G-G~~ 245 (384)
T 1bs0_A 206 AHGTGVIGEQGRGSCWLQ-K-VKPELLVVTFGKGFG-VSG-AAV 245 (384)
T ss_dssp TTTTTTSSGGGCCHHHHT-T-CCCSEEEEESSSTTS-SCC-EEE
T ss_pred CcccceecCCCCchHHhc-C-CCCcEEEeeccchhh-ccC-cEE
Confidence 99754421 101 11111 2 246999999999998 555 654
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=3.9e-12 Score=140.17 Aligned_cols=153 Identities=15% Similarity=0.101 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcch
Q psy13453 563 LEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNS 642 (764)
Q Consensus 563 lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~ 642 (764)
...++.+++++++|.+ ..+++++||+|+..++.+.. . ++..|+++..+|.
T Consensus 60 ~~~~l~~~la~~~g~~-----------~~i~~~sG~~ai~~~~~~~~----~---------------~gd~vl~~~~~y~ 109 (389)
T 3acz_A 60 TVEQFEEMVCSIEGAA-----------GSAAFGSGMGAISSSTLAFL----Q---------------KGDHLIAGDTLYG 109 (389)
T ss_dssp HHHHHHHHHHHHHTCS-----------EEEEESSHHHHHHHHHTTTC----C---------------TTCEEEEESSCCH
T ss_pred HHHHHHHHHHHHhCCC-----------eEEEeCCHHHHHHHHHHHHh----C---------------CCCEEEEeCCCch
Confidence 3445556788888865 25788889999888776431 0 1225778888998
Q ss_pred hHHHH----HHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEE
Q psy13453 643 SVEKS----AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLH 718 (764)
Q Consensus 643 Sv~kA----a~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLH 718 (764)
+...+ +...|++++.+|. .|+++|+++|+++ +-+|+++..++.+|.+.|+++|+++|++||+|++
T Consensus 110 ~~~~~~~~~~~~~g~~~~~v~~-----~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li 178 (389)
T 3acz_A 110 CTVSLFTHWLPRFGIEVDLIDT-----SDVEKVKAAWKPN------TKMVYLESPANPTCKVSDIKGIAVVCHERGARLV 178 (389)
T ss_dssp HHHHHHHHHHHHTTCEEEEECT-----TCHHHHHHTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHcCCEEEEECC-----CCHHHHHHhcCCC------CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEE
Confidence 87666 5678999999887 3799999888653 4488888999999999999999999999999999
Q ss_pred EeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcC--ceee
Q psy13453 719 VDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD--CSAM 763 (764)
Q Consensus 719 VDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~--~g~l 763 (764)
||.+|+.+....+ .. . .+|.++.++||+++.|.+ +|++
T Consensus 179 vD~~~~~~~~~~~-~~-----~-~~di~~~S~sK~~~~~~~~~~G~v 218 (389)
T 3acz_A 179 VDATFTSPCFLKP-LE-----L-GADIALHSVSKYINGHGDVIGGVS 218 (389)
T ss_dssp EECTTTCTTTCCG-GG-----T-TCSEEEEETTTTTTCSSCCCCEEE
T ss_pred EECCCccccccCc-cc-----c-CCeEEEECChhhccCCCCceeEEE
Confidence 9999987654222 11 1 469999999999999987 6765
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-11 Score=131.70 Aligned_cols=169 Identities=14% Similarity=0.007 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcch
Q psy13453 563 LEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNS 642 (764)
Q Consensus 563 lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~ 642 (764)
...++.+++++++|.+++ ..++|+|||+++..++.+.. . ++..|+++..+|.
T Consensus 52 ~~~~l~~~la~~~~~~~~---------~i~~~~g~~~a~~~~~~~l~----~---------------~gd~vl~~~~~~~ 103 (354)
T 3ly1_A 52 EILMLGNKLAAHHQVEAP---------SILLTAGSSEGIRAAIEAYA----S---------------LEAQLVIPELTYG 103 (354)
T ss_dssp HHHHHHHHHHHHTTSCGG---------GEEEESHHHHHHHHHHHHHC----C---------------TTCEEEEESSSCT
T ss_pred chHHHHHHHHHHhCCChH---------HEEEeCChHHHHHHHHHHHh----C---------------CCCeEEECCCCch
Confidence 345678899999987653 68999999999988876541 1 1124778889999
Q ss_pred hHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHh--cCCEEEEe
Q psy13453 643 SVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQE--YNIWLHVD 720 (764)
Q Consensus 643 Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~--~glwLHVD 720 (764)
++..++...|.+++.+|.++++.+|+++|+++|++. ..+-+|+.+..++.+|.+-|++++.++|+. ||+++++|
T Consensus 104 ~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~D 179 (354)
T 3ly1_A 104 DGEHFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAAY----SGPSIVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVD 179 (354)
T ss_dssp HHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHHHTC----SSCEEEEEESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEE
T ss_pred HHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhccC----CCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEe
Confidence 999999999999999999988999999999999731 125577778899999999998888888877 99999999
Q ss_pred ccccccccccc--hhhhhhcCCCcccEEEEcCCccCC-CCcCceee
Q psy13453 721 AAYAGSALLLP--EYAHLKRGLEYVDSFDFNTHKWLL-VNFDCSAM 763 (764)
Q Consensus 721 aA~Gg~~l~~~--~~r~~l~gie~aDSit~d~HK~l~-~P~~~g~l 763 (764)
.+|+.+..-.. .....+......+-+..++||+++ ....+|++
T Consensus 180 e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~ 225 (354)
T 3ly1_A 180 EAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYA 225 (354)
T ss_dssp CTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEE
T ss_pred ccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheee
Confidence 99997543211 111112211123577889999997 44556654
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.36 E-value=6.8e-12 Score=139.87 Aligned_cols=150 Identities=15% Similarity=0.121 Sum_probs=114.0
Q ss_pred HHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhH
Q psy13453 565 VLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV 644 (764)
Q Consensus 565 ~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv 644 (764)
.++.+.+++++|.+. .+++++||+||..++.+.. . ++..|+++..+|.+.
T Consensus 61 ~~l~~~la~~~g~~~-----------~v~~~sGt~A~~~~l~~~~----~---------------~gd~vi~~~~~~~~~ 110 (421)
T 2ctz_A 61 DVLEKRLAALEGGKA-----------ALATASGHAAQFLALTTLA----Q---------------AGDNIVSTPNLYGGT 110 (421)
T ss_dssp HHHHHHHHHHHTCSE-----------EEEESSHHHHHHHHHHHHC----C---------------TTCEEEECSCCCHHH
T ss_pred HHHHHHHHHHhCCCc-----------eEEecCHHHHHHHHHHHHh----C---------------CCCEEEEeCCCchHH
Confidence 344556777777643 4677778999988887541 1 123588899999998
Q ss_pred HHHH----HhCCCceEEE-ecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEE
Q psy13453 645 EKSA----IIGDVPVRQL-RSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHV 719 (764)
Q Consensus 645 ~kAa----~~lGl~v~~V-p~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHV 719 (764)
..++ ...|++++.+ +.+ |+++|+++|++. +.+|+++..++.+|.+.|+++|+++|++||+|+|+
T Consensus 111 ~~~~~~~~~~~g~~~~~~~~~~-----d~~~l~~~i~~~------~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~liv 179 (421)
T 2ctz_A 111 FNQFKVTLKRLGIEVRFTSREE-----RPEEFLALTDEK------TRAWWVESIGNPALNIPDLEALAQAAREKGVALIV 179 (421)
T ss_dssp HHHHHTHHHHTTCEEEECCTTC-----CHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHcCCEEEEECCCC-----CHHHHHHhhccC------CeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEE
Confidence 8775 6789999888 664 799999988653 45788899999999999999999999999999999
Q ss_pred eccc-cccccccchhhhhhcCCCcccEEEEcCCccCCCCcC-cee
Q psy13453 720 DAAY-AGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD-CSA 762 (764)
Q Consensus 720 DaA~-Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~-~g~ 762 (764)
|++| +.+.. ... . +. .+|.++.++||+++.|.+ .|.
T Consensus 180 D~~~~~~g~~-~~~---~--~~-~~Di~~~s~~K~l~~~g~~~G~ 217 (421)
T 2ctz_A 180 DNTFGMGGYL-LRP---L--AW-GAALVTHSLTKWVGGHGAVIAG 217 (421)
T ss_dssp ECGGGGGGTS-CCG---G--GG-TCSEEEEETTTTTTCSSCCCCE
T ss_pred ECCccccccc-CCc---c--cc-CCeEEEECCcccccCCCCcEEE
Confidence 9999 65532 111 1 11 369999999999998764 443
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.7e-12 Score=136.43 Aligned_cols=195 Identities=13% Similarity=0.115 Sum_probs=128.0
Q ss_pred CccccccCCCCChHHHHHHHHHHhh-cccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHH
Q psy13453 523 PQFNAYFPTGSSYPSIVGDMLSGAF-GLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEAT 601 (764)
Q Consensus 523 P~~~~~~~~~~~~~~~lad~l~~~l-N~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeAN 601 (764)
-.|++.-.. +....++.+++.... ......|...|...++| +++++++|.+. .++++|||+++
T Consensus 12 ~~~l~~~~~-p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~----~~la~~~~~~~-----------~i~~~~G~~a~ 75 (357)
T 3lws_A 12 TTGQISGHG-KRNVGVLKTAFAAVADEMASDQYGTGAIIEPFE----QKFADVLGMDD-----------AVFFPSGTMAQ 75 (357)
T ss_dssp CSEESSBSS-CCBHHHHHHHHTTSCTTCBCEETTEETTHHHHH----HHHHHHHTCSE-----------EEEESCHHHHH
T ss_pred hcccccCCC-CCCHHHHHHHHHHhhcccCcccccCChHHHHHH----HHHHHHhCCCc-----------EEEecCcHHHH
Confidence 345554433 334455555544321 11123344445555555 57788888743 57889999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHH---HHHhCCCceEEEecCCCCcccHHHHHHHHHHh
Q psy13453 602 LVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEK---SAIIGDVPVRQLRSDDNGVLRGDALLTAVKED 678 (764)
Q Consensus 602 l~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~k---Aa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~ 678 (764)
..++.+....- .+.+|+++...|++..+ .+...|+.++.||. +++.+|+++|+++. +
T Consensus 76 ~~al~~~~~~g-----------------d~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~d~~~l~~~~--~ 135 (357)
T 3lws_A 76 QVALRIWSDET-----------------DNRTVAYHPLCHLEIHEQDGLKELHPIETILVGA-ADRLMTLDEIKALP--D 135 (357)
T ss_dssp HHHHHHHHHHH-----------------TCCEEEECTTCHHHHSSTTHHHHHSSCEEEECSC-TTSCCCHHHHHTCC--S
T ss_pred HHHHHHHhhcC-----------------CCcEEEecccceeeeeccchhhhccCcEEEEecC-CCCCcCHHHHhcCc--C
Confidence 98887665431 01257788899988765 34567888888885 56889999998872 1
Q ss_pred hhcCCCceEEEEeeccCCc-cccc---cHHHHHHHHHhcCCEEEEecccccccc--ccchhhhhhcCCCcccEEEEcCCc
Q psy13453 679 LAKGLIPCCLIATLGTTGT-CAFD---NLEELGPICQEYNIWLHVDAAYAGSAL--LLPEYAHLKRGLEYVDSFDFNTHK 752 (764)
Q Consensus 679 ~~~G~~p~~VvataGTT~~-GaiD---pl~eIa~i~~~~glwLHVDaA~Gg~~l--~~~~~r~~l~gie~aDSit~d~HK 752 (764)
+-+|+++..++.+ |.+- ++++|+++|++||+|+|+|+||+.... ......... +.+|.++.++||
T Consensus 136 ------~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~---~~~d~~~~s~sK 206 (357)
T 3lws_A 136 ------IACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA---GLFDSIYISFYK 206 (357)
T ss_dssp ------CSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH---TTSSEEEEESSS
T ss_pred ------cceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH---hcCCEEEEeccc
Confidence 3366666666665 7765 599999999999999999999862211 111122222 346999999999
Q ss_pred cCCCCcCceee
Q psy13453 753 WLLVNFDCSAM 763 (764)
Q Consensus 753 ~l~~P~~~g~l 763 (764)
+++.|.+ |++
T Consensus 207 ~~~~~~g-g~~ 216 (357)
T 3lws_A 207 GLGGIAG-AIL 216 (357)
T ss_dssp TTCCSSC-EEE
T ss_pred cCCCCce-EEE
Confidence 9988887 654
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.35 E-value=7.3e-12 Score=135.46 Aligned_cols=164 Identities=14% Similarity=0.037 Sum_probs=121.6
Q ss_pred HHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhH
Q psy13453 565 VLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV 644 (764)
Q Consensus 565 ~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv 644 (764)
.++.+++++++|.++. ...+||+|||+++..++.+.. . +...|+++..+|.++
T Consensus 70 ~~l~~~la~~~g~~~~--------~~i~~~~g~t~a~~~~~~~~~----~---------------~gd~Vl~~~~~~~~~ 122 (367)
T 3euc_A 70 EALRAKLKEVMQVPAG--------MEVLLGNGSDEIISMLALAAA----R---------------PGAKVMAPVPGFVMY 122 (367)
T ss_dssp HHHHHHHHHHHTCCTT--------CEEEEEEHHHHHHHHHHHHTC----C---------------TTCEEEEEESCSCCS
T ss_pred HHHHHHHHHHhCCCCc--------ceEEEcCCHHHHHHHHHHHHc----C---------------CCCEEEEcCCCHHHH
Confidence 4566678888888321 368999999999888776431 1 122477888899999
Q ss_pred HHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccHHHHHHHHHhc--CCEEEE
Q psy13453 645 EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLEELGPICQEY--NIWLHV 719 (764)
Q Consensus 645 ~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~eIa~i~~~~--glwLHV 719 (764)
..++...|.+++.+|.++++.+|+++|+++|++. .+-+|+.+..++.+|.+ +++++|+++|++| |+++|+
T Consensus 123 ~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~ 197 (367)
T 3euc_A 123 AMSAQFAGLEFVGVPLRADFTLDRGAMLAAMAEH-----QPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVV 197 (367)
T ss_dssp CHHHHTTTCEEEEEECCTTSCCCHHHHHHHHHHH-----CCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEE
T ss_pred HHHHHHcCCeEEEecCCCCCCCCHHHHHHHhhcc-----CCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEE
Confidence 9999999999999999999999999999999873 13477778889999998 6788899999999 999999
Q ss_pred eccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 720 DAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 720 DaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
|.+|+.+.. ......+.. ...+-+..++||++.....+|++
T Consensus 198 De~~~~~~~--~~~~~~~~~-~~~~i~~~s~sK~~~~G~r~G~~ 238 (367)
T 3euc_A 198 DEAYQPFAQ--ESWMSRLTD-FGNLLVMRTVSKLGLAGIRLGYV 238 (367)
T ss_dssp ECTTCCSSS--CCSGGGGGT-CTTEEEEEECCCTTSCSCCEEEE
T ss_pred eCcchhhcc--cchHHHHhh-CCCEEEEecchhhcccccCceee
Confidence 999987431 111112211 12356778999994444556654
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=5.3e-12 Score=140.41 Aligned_cols=185 Identities=14% Similarity=0.099 Sum_probs=133.0
Q ss_pred cCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEE
Q psy13453 555 LSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVA 634 (764)
Q Consensus 555 ~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi 634 (764)
.......++++.+.+|+.+..|..-. ......+||+|||++|..++.+.+. +...|
T Consensus 83 ~~~~g~~~l~~~la~~~~~~~~~~~~-----~~~~~v~~~~gg~~a~~~~~~~l~~-------------------~gd~v 138 (435)
T 3piu_A 83 QDYHGLPAFKKAMVDFMAEIRGNKVT-----FDPNHLVLTAGATSANETFIFCLAD-------------------PGEAV 138 (435)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTTSSC-----CCGGGEEEEEHHHHHHHHHHHHHCC-------------------TTCEE
T ss_pred CCCCCcHHHHHHHHHHHHHhhCCCCC-----CCHHHEEEcCChHHHHHHHHHHhcC-------------------CCCeE
Confidence 33444578999999999887763211 0124689999999999888875421 11257
Q ss_pred EecCCcchhHHHHHH-hCCCceEEEecCC--CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccHHHHHH
Q psy13453 635 YTSDQSNSSVEKSAI-IGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLEELGP 708 (764)
Q Consensus 635 ~~S~~aH~Sv~kAa~-~lGl~v~~Vp~d~--~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~eIa~ 708 (764)
++.+.+|.+...++. ..|.+++.+|.++ ++.+|+++|+++|++..+++..+.+|+.+..++.+|.+ +++++|++
T Consensus 139 l~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~ 218 (435)
T 3piu_A 139 LIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLS 218 (435)
T ss_dssp EEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred EECCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHH
Confidence 788889999998887 6899999999875 45699999999998876666667788888889999988 56788999
Q ss_pred HHHhcCCEEEEeccccccccccch---hhhhhc--CC------CcccEEEEcCCccCCCC-cCceee
Q psy13453 709 ICQEYNIWLHVDAAYAGSALLLPE---YAHLKR--GL------EYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 709 i~~~~glwLHVDaA~Gg~~l~~~~---~r~~l~--gi------e~aDSit~d~HK~l~~P-~~~g~l 763 (764)
+|++||+|+++|.+|+++.+-... ...... ++ ..-.-+..++||.++.| +.+|++
T Consensus 219 ~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~ 285 (435)
T 3piu_A 219 FVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAI 285 (435)
T ss_dssp HHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEE
T ss_pred HHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEE
Confidence 999999999999999875432211 111111 11 11126688999999743 455654
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=4.2e-12 Score=140.65 Aligned_cols=193 Identities=12% Similarity=0.022 Sum_probs=137.9
Q ss_pred HHHHHHHhhcc---cCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCC-cEEEeCChHHHHHHHHHHHHHHHhh
Q psy13453 539 VGDMLSGAFGL---IGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPG-GGIIQSTASEATLVSILVAKRKMIN 614 (764)
Q Consensus 539 lad~l~~~lN~---n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~-~GvfTsGgTeANl~Al~aAR~~~~~ 614 (764)
+.+.+...++. ....|.......++++.+.+|+.+.+|.+.+ .. ..+||+|||+++..++.+...
T Consensus 55 v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~-------~~~~v~~~~g~~~a~~~~~~~~~~---- 123 (429)
T 1yiz_A 55 ALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTIN-------PMTEVLVTVGAYEALYATIQGHVD---- 123 (429)
T ss_dssp HHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCC-------TTTSEEEESHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCC-------CcCCEEEecChHHHHHHHHHHhcC----
Confidence 34444544443 2233444445678999999999998886432 13 589999999999888876421
Q ss_pred hhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCC----------CCcccHHHHHHHHHHhhhcCCC
Q psy13453 615 HWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDD----------NGVLRGDALLTAVKEDLAKGLI 684 (764)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~----------~g~md~~~Le~~I~~~~~~G~~ 684 (764)
++..|++..-+|.+...++...|.+++.+|.+. ++.+|+++|+++|++.
T Consensus 124 ---------------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~------ 182 (429)
T 1yiz_A 124 ---------------EGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEK------ 182 (429)
T ss_dssp ---------------TTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTT------
T ss_pred ---------------CCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhccC------
Confidence 112477788889999999999999999999875 4689999999988532
Q ss_pred ceEEEEeeccCCccccc---cHHHHHHHHHhcCCEEEEeccccccccccchhhh--hhcCCCcccEEEEcCCccCCCC-c
Q psy13453 685 PCCLIATLGTTGTCAFD---NLEELGPICQEYNIWLHVDAAYAGSALLLPEYAH--LKRGLEYVDSFDFNTHKWLLVN-F 758 (764)
Q Consensus 685 p~~VvataGTT~~GaiD---pl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~--~l~gie~aDSit~d~HK~l~~P-~ 758 (764)
+-+|+.+..++.+|.+- ++++|+++|++||+|+++|.+|+++..-...+.. .+.+....|.+..++||+++.| +
T Consensus 183 ~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~ 262 (429)
T 1yiz_A 183 TKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGW 262 (429)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGG
T ss_pred ceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCc
Confidence 44677778889999986 5999999999999999999999875432111111 1112234689999999988733 2
Q ss_pred Cceee
Q psy13453 759 DCSAM 763 (764)
Q Consensus 759 ~~g~l 763 (764)
.+|++
T Consensus 263 r~G~~ 267 (429)
T 1yiz_A 263 KIGWA 267 (429)
T ss_dssp CCEEE
T ss_pred ceEEE
Confidence 26665
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=7.2e-12 Score=137.09 Aligned_cols=192 Identities=8% Similarity=-0.065 Sum_probs=134.2
Q ss_pred HHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhc
Q psy13453 538 IVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQ 617 (764)
Q Consensus 538 ~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~ 617 (764)
.+.+.+...+......|... ..++++.+.+|+.+.+|++.+ ....++|+|||+++..++.+.. .
T Consensus 48 ~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~-------~~~v~~t~g~~~a~~~~~~~l~----~--- 111 (399)
T 1c7n_A 48 ELIEGLKKYLDETVLGYTGP--TEEYKKTVKKWMKDRHQWDIQ-------TDWIINTAGVVPAVFNAVREFT----K--- 111 (399)
T ss_dssp HHHHHHHHHHHHCCCSSBCC--CHHHHHHHHHHHHHHHCCCCC-------GGGEEEESSHHHHHHHHHHHHC----C---
T ss_pred HHHHHHHHHHhcCCCCCCCC--cHHHHHHHHHHHHHHhCCCCC-------hhhEEEcCCHHHHHHHHHHHhc----C---
Confidence 34444444443323334332 778899999999988885421 1368899999999988876542 1
Q ss_pred cCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecC-CC--CcccHHHHHHHHHHhhhcCCCceEEEEeecc
Q psy13453 618 SKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSD-DN--GVLRGDALLTAVKEDLAKGLIPCCLIATLGT 694 (764)
Q Consensus 618 ~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d-~~--g~md~~~Le~~I~~~~~~G~~p~~VvataGT 694 (764)
++..|++..-+|.+...++...|.+++.+|.+ ++ +.+|+++|+++|++. .+-+|+.+..+
T Consensus 112 ------------~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~-----~~~~v~~~~~~ 174 (399)
T 1c7n_A 112 ------------PGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDK-----NNKALLFCSPH 174 (399)
T ss_dssp ------------TTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCT-----TEEEEEEESSB
T ss_pred ------------CCCEEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccC-----CCcEEEEcCCC
Confidence 11257788889999999999999999999986 43 369999999998631 24466678889
Q ss_pred CCcccccc---HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCC----CcccEEEEcCCccCCCC-cCceee
Q psy13453 695 TGTCAFDN---LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGL----EYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 695 T~~GaiDp---l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gi----e~aDSit~d~HK~l~~P-~~~g~l 763 (764)
+.+|.+-| +++|+++|++||+|+++|.+|+++..-..... .+..+ ...+-+..++||+++.| +.+|++
T Consensus 175 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~-~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~ 250 (399)
T 1c7n_A 175 NPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHT-VFQSIDEQLADKTITFTAPSKTFNIAGMGMSNI 250 (399)
T ss_dssp TTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCC-CGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEE
T ss_pred CCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcc-cHHHcCccccCcEEEEEeChhhccccchheEEE
Confidence 99999977 99999999999999999999997543211110 11111 12246778999998744 335654
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=4.6e-12 Score=135.79 Aligned_cols=168 Identities=18% Similarity=0.182 Sum_probs=115.7
Q ss_pred ccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceE
Q psy13453 554 WLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633 (764)
Q Consensus 554 ~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~v 633 (764)
|...+...+++ +++++++|.+. .++|+|||++|..++.+.. . ++..
T Consensus 34 y~~~~~~~~l~----~~la~~~g~~~-----------~~~~~~gt~a~~~~~~~~~----~---------------~gd~ 79 (347)
T 1jg8_A 34 YGEDPTINELE----RLAAETFGKEA-----------ALFVPSGTMGNQVSIMAHT----Q---------------RGDE 79 (347)
T ss_dssp GTCCHHHHHHH----HHHHHHHTCSE-----------EEEESCHHHHHHHHHHHHC----C---------------TTCE
T ss_pred cCCChHHHHHH----HHHHHHhCCce-----------EEEecCcHHHHHHHHHHhc----C---------------CCCE
Confidence 44455544444 57777777643 5899999999987765431 1 1225
Q ss_pred EEecCCcchhHHH---HHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCc-ccc---ccHHHH
Q psy13453 634 AYTSDQSNSSVEK---SAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGT-CAF---DNLEEL 706 (764)
Q Consensus 634 i~~S~~aH~Sv~k---Aa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~-Gai---Dpl~eI 706 (764)
|++++.+|.+... ++...|.+++.| .++++.+|+++|+++|++....+..+.+|+.+..++.+ |.+ +++++|
T Consensus 80 Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i 158 (347)
T 1jg8_A 80 VILEADSHIFWYEVGAMAVLSGVMPHPV-PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEI 158 (347)
T ss_dssp EEEETTCHHHHSSTTHHHHHTCCEEEEE-CEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHH
T ss_pred EEEcCcchhhhccccchhhccCeEEEEe-cCCCCccCHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHH
Confidence 7778899987654 566789988888 55678899999999986421111235677777788888 887 456789
Q ss_pred HHHHHhcCCEEEEeccccccccc-cc-hhhhhhcCCCcccEEEEcCCccCCCCcC
Q psy13453 707 GPICQEYNIWLHVDAAYAGSALL-LP-EYAHLKRGLEYVDSFDFNTHKWLLVNFD 759 (764)
Q Consensus 707 a~i~~~~glwLHVDaA~Gg~~l~-~~-~~r~~l~gie~aDSit~d~HK~l~~P~~ 759 (764)
+++|++||+++|+|+||.-+... .+ ....... .+|++++++||+++.|.|
T Consensus 159 ~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~---~~d~~~~s~sK~l~~~~G 210 (347)
T 1jg8_A 159 CTIAKEHGINVHIDGARIFNASIASGVPVKEYAG---YADSVMFCLSKGLCAPVG 210 (347)
T ss_dssp HHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHH---TCSEEEEESSSTTCCSSC
T ss_pred HHHHHHCCCEEEeehhhhhcchhhcCCChHHhcc---cccEEEEecccccCCCce
Confidence 99999999999999986432111 11 1122222 359999999999998865
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-11 Score=133.32 Aligned_cols=185 Identities=9% Similarity=-0.053 Sum_probs=134.2
Q ss_pred HHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhcc
Q psy13453 539 VGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQS 618 (764)
Q Consensus 539 lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~ 618 (764)
+.+.+...+......|...+...++++.+.+|+.+..|++.+ ....++|+|||+++..++.+.. .
T Consensus 47 v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~-------~~~v~~~~g~~~a~~~~~~~~~----~---- 111 (370)
T 2z61_A 47 IVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADII-------PDNIIITGGSSLGLFFALSSII----D---- 111 (370)
T ss_dssp HHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCC-------GGGEEEESSHHHHHHHHHHHHC----C----
T ss_pred HHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCC-------hhhEEECCChHHHHHHHHHHhc----C----
Confidence 344444444332334444455788999999999998886432 1368999999999988887642 1
Q ss_pred CCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcc
Q psy13453 619 KNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTC 698 (764)
Q Consensus 619 ~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~G 698 (764)
++..|++++.+|.+...++...|.+++.+| +|+++|++++++. +-+|+.+..++.+|
T Consensus 112 -----------~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~------~d~~~l~~~l~~~------~~~v~~~~p~nptG 168 (370)
T 2z61_A 112 -----------DGDEVLIQNPCYPCYKNFIRFLGAKPVFCD------FTVESLEEALSDK------TKAIIINSPSNPLG 168 (370)
T ss_dssp -----------TTCEEEEESSCCTHHHHHHHHTTCEEEEEC------SSHHHHHHHCCSS------EEEEEEESSCTTTC
T ss_pred -----------CCCEEEEeCCCchhHHHHHHHcCCEEEEeC------CCHHHHHHhcccC------ceEEEEcCCCCCcC
Confidence 112578888999999999999999988887 7899999988542 44677788889999
Q ss_pred ccccHHHHHHHHHhcCCEEEEeccccccccccc--hhhhhhcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 699 AFDNLEELGPICQEYNIWLHVDAAYAGSALLLP--EYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 699 aiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~--~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
.+-|++ |+++|++||+++++|.+|+.+..-.+ ... .+.+....|.+..++||+++.| +.+|++
T Consensus 169 ~~~~~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~-~~~~~~~~~i~~~s~sK~~~~~G~r~G~~ 234 (370)
T 2z61_A 169 EVIDRE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAI-EFDENLEKTILINGFSKLYAMTGWRIGYV 234 (370)
T ss_dssp CCCCHH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGG-GTCTTCSSEEEEEESTTTTTCGGGCCEEE
T ss_pred cccCHH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHH-HccCCCCcEEEEecChhccCCccceEEEE
Confidence 999999 99999999999999999997543211 111 1122335688999999999744 225654
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-11 Score=135.92 Aligned_cols=198 Identities=9% Similarity=-0.011 Sum_probs=136.5
Q ss_pred HHHHHHHHHhhccc---CccccCCchHHHHHHHHHHHHHHHcCCC-ccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHH
Q psy13453 537 SIVGDMLSGAFGLI---GFSWLSSPACTELEVLVMNWLGKALGLP-EEFLNCSPGPGGGIIQSTASEATLVSILVAKRKM 612 (764)
Q Consensus 537 ~~lad~l~~~lN~n---~~~~~~sp~~t~lE~~v~~~la~llG~p-~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~ 612 (764)
..+.+.+...+..+ ...|...+...++++.+.+|+.+.+|++ .+ ....+||+|||+++..++.+..
T Consensus 61 ~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~-------~~~v~~t~G~~~al~~~~~~l~--- 130 (425)
T 1vp4_A 61 KELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLD-------EDNLIFTVGSQQALDLIGKLFL--- 130 (425)
T ss_dssp HHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCC-------GGGEEEEEHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCC-------cccEEEeccHHHHHHHHHHHhC---
Confidence 34445555544332 2345444567889999999998887854 21 1368999999999887776431
Q ss_pred hhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhc--CCCceEE-E
Q psy13453 613 INHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAK--GLIPCCL-I 689 (764)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~--G~~p~~V-v 689 (764)
. ++..|++..-+|.+...++...|.+++.+|.++++ +|+++|+++|++..++ +..+-+| +
T Consensus 131 -~---------------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~v~~ 193 (425)
T 1vp4_A 131 -D---------------DESYCVLDDPAYLGAINAFRQYLANFVVVPLEDDG-MDLNVLERKLSEFDKNGKIKQVKFIYV 193 (425)
T ss_dssp -C---------------TTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCGGGEEEEEE
T ss_pred -C---------------CCCEEEEeCCCcHHHHHHHHHcCCEEEEeccCCCC-CCHHHHHHHHHhhhhcccCCCceEEEE
Confidence 1 11247778889999999999999999999998766 9999999999863221 1234455 5
Q ss_pred EeeccCCccccc---cHHHHHHHHHhcCCEEEEeccccccccccc---hhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 690 ATLGTTGTCAFD---NLEELGPICQEYNIWLHVDAAYAGSALLLP---EYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 690 ataGTT~~GaiD---pl~eIa~i~~~~glwLHVDaA~Gg~~l~~~---~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
.+..++.+|.+- ++++|+++|++||+|+++|.+|+.+..-.. .... +. ....+-+..++||+++.-+.+|++
T Consensus 194 ~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~-~~-~~~~~i~~~s~sK~~~~G~r~G~~ 271 (425)
T 1vp4_A 194 VSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFK-IG-GPERVVLLNTFSKVLAPGLRIGMV 271 (425)
T ss_dssp ECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHH-HH-CTTTEEEEEESTTTTCGGGCEEEE
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHH-hC-CCCCEEEEeccccccccccceEEE
Confidence 677888899885 477899999999999999999987543111 1111 11 112356788999999822335665
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.4e-11 Score=134.64 Aligned_cols=188 Identities=11% Similarity=0.003 Sum_probs=130.7
Q ss_pred HHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhcc
Q psy13453 539 VGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQS 618 (764)
Q Consensus 539 lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~ 618 (764)
+.+.+...+......|.......++.+.+.+++.+.+|++.+ ....+||+|||+++..++.+...
T Consensus 49 v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~-------~~~v~~t~g~~~al~~~~~~l~~-------- 113 (391)
T 3h14_A 49 AVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLD-------PGRVVITPGSSGGFLLAFTALFD-------- 113 (391)
T ss_dssp HHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCC-------GGGEEEESSHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCC-------HHHEEEecChHHHHHHHHHHhcC--------
Confidence 444455555443344544445678999999999999886532 24689999999999887765421
Q ss_pred CCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCCC--CcccHHHHHHHHHHhhhcCCCceEEEEeeccCC
Q psy13453 619 KNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDN--GVLRGDALLTAVKEDLAKGLIPCCLIATLGTTG 696 (764)
Q Consensus 619 ~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~--g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~ 696 (764)
+...|++..-+|.+...++...|.+++.+|.+.+ +.+|+++|+++ .+-+|+.+..++.
T Consensus 114 -----------~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~---------~~~~v~i~~p~np 173 (391)
T 3h14_A 114 -----------SGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGL---------DLAGLMVASPANP 173 (391)
T ss_dssp -----------TTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS---------CCSEEEEESSCTT
T ss_pred -----------CCCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhc---------CCeEEEECCCCCC
Confidence 1125778889999999999999999999999854 47899999876 2447777888999
Q ss_pred cccccc---HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCC-CCcCceee
Q psy13453 697 TCAFDN---LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLL-VNFDCSAM 763 (764)
Q Consensus 697 ~GaiDp---l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~-~P~~~g~l 763 (764)
+|.+-| +++|+++|++||+++++|.+|+.+..-.. .... ..+...+-+..+++|+++ ....+|++
T Consensus 174 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~-~~~~-~~~~~~~i~~~s~sK~~g~~G~r~G~~ 242 (391)
T 3h14_A 174 TGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAK-AVTA-LELTDECYVINSFSKYFSMTGWRVGWM 242 (391)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC-CCCG-GGTCSSSEEEEESSSTTCCTTSCCEEE
T ss_pred CCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCC-CcCh-hhcCCCEEEEEechhccCCccceeEEE
Confidence 999876 88899999999999999999987543211 1111 112233566779999997 44556654
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-12 Score=143.07 Aligned_cols=168 Identities=14% Similarity=0.107 Sum_probs=118.3
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
..+....+|..+.+++++++|.+.. -+++++||+|+..++.++. . ++..|+
T Consensus 63 g~~~~~~~e~~ar~~la~~~g~~~~----------~i~~~sGt~a~~~~~~~~~----~---------------~gd~Vl 113 (407)
T 2dkj_A 63 GCEVIDRVESLAIERAKALFGAAWA----------NVQPHSGSQANMAVYMALM----E---------------PGDTLM 113 (407)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSEE----------ECCCSSHHHHHHHHHHHHC----C---------------TTCEEE
T ss_pred CchHHHHHHHHHHHHHHHHhCCCcc----------eEEecchHHHHHHHHHHhc----C---------------CCCEEE
Confidence 3444557888888999999998642 3566667889888877652 1 112577
Q ss_pred ecCCcchhH---HHHHHhCCCceEEEec--C-CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHH
Q psy13453 636 TSDQSNSSV---EKSAIIGDVPVRQLRS--D-DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPI 709 (764)
Q Consensus 636 ~S~~aH~Sv---~kAa~~lGl~v~~Vp~--d-~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i 709 (764)
+++.+|.+. ..++...|..++.++. + +++.+|+++|+++|++. .+-+|+++ +...|.+.|+++|+++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~-----~~~~v~~~--~p~~~~~~~l~~i~~l 186 (407)
T 2dkj_A 114 GMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEH-----RPKVIVAG--ASAYPRFWDFKAFREI 186 (407)
T ss_dssp EECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHHH-----CCSEEEEC--CSSCCSCCCHHHHHHH
T ss_pred EecccccCccchHHHHHhcCceEEEEecCCCcccCccCHHHHHHHHhhc-----CCeEEEEe--ccccCCCCCHHHHHHH
Confidence 788888776 3455555664455555 4 37899999999999752 13355553 3334688899999999
Q ss_pred HHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 710 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 710 ~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
|++||+|+++|++|+.++...+... ..++.+|.++.++||+++.+.+ |++
T Consensus 187 ~~~~~~~li~Dea~~~g~~~~~~~~---~~~~~~di~~~s~sK~l~g~~~-G~~ 236 (407)
T 2dkj_A 187 ADEVGAYLVVDMAHFAGLVAAGLHP---NPLPYAHVVTSTTHKTLRGPRG-GLI 236 (407)
T ss_dssp HHHHTCEEEEECTTTHHHHHTTCSC---CCTTTCSEEEEESSGGGCCCSC-EEE
T ss_pred HHHcCCEEEEEccccccccccCccC---CccccccEEEEeccccCCCCCc-eEE
Confidence 9999999999999998554333211 1123479999999999987876 765
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=6.3e-12 Score=138.34 Aligned_cols=156 Identities=11% Similarity=-0.044 Sum_probs=116.0
Q ss_pred HHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhH
Q psy13453 565 VLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV 644 (764)
Q Consensus 565 ~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv 644 (764)
.++.+.+++++|.+ ..+++++||+++..++.+++ .. ++..|+++..+|.+.
T Consensus 66 ~~l~~~la~~~~~~-----------~~v~~~~Gt~a~~~~l~~~~---~~---------------~gd~vl~~~~~~~~~ 116 (399)
T 2oga_A 66 EGFEAEFAAYCETD-----------HAVGVNSGMDALQLALRGLG---IG---------------PGDEVIVPSHTYIAS 116 (399)
T ss_dssp HHHHHHHHHHTTSS-----------EEEEESCHHHHHHHHHHHTT---CC---------------TTCEEEEESSSCTHH
T ss_pred HHHHHHHHHHHCCC-----------eEEEecCHHHHHHHHHHHhC---CC---------------CcCEEEECCCccHHH
Confidence 34455677777764 36899999999988876542 00 122577888899999
Q ss_pred HHHHHhCCCceEEEecCC-CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccc
Q psy13453 645 EKSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAY 723 (764)
Q Consensus 645 ~kAa~~lGl~v~~Vp~d~-~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~ 723 (764)
..++...|.+++.+|+++ ++.+|+++|+++|++. +-+|+ .++.+|.+.|+++|+++|+++|+|+++|++|
T Consensus 117 ~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~------~~~v~---~~n~tG~~~~l~~i~~l~~~~~~~li~Dea~ 187 (399)
T 2oga_A 117 WLAVSATGATPVPVEPHEDHPTLDPLLVEKAITPR------TRALL---PVHLYGHPADMDALRELADRHGLHIVEDAAQ 187 (399)
T ss_dssp HHHHHHTTCEEEEECBCSSSSSBCHHHHHHHCCTT------EEEEC---CBCGGGCCCCHHHHHHHHHHHTCEECEECTT
T ss_pred HHHHHHCCCEEEEEecCCCCCCcCHHHHHHhcCCC------CeEEE---EeCCcCCccCHHHHHHHHHHcCCEEEEECcc
Confidence 999999999999999986 5899999999998643 33444 3577999999999999999999999999999
Q ss_pred cccccccchhhhhhcCCCcccEEEEcCC--ccCCCCcCceee
Q psy13453 724 AGSALLLPEYAHLKRGLEYVDSFDFNTH--KWLLVNFDCSAM 763 (764)
Q Consensus 724 Gg~~l~~~~~r~~l~gie~aDSit~d~H--K~l~~P~~~g~l 763 (764)
+.+..... +. + + ..+|.+++++| |+++.|-.+|++
T Consensus 188 ~~g~~~~~--~~-~-~-~~~di~~~S~~~sK~~~~~G~~g~~ 224 (399)
T 2oga_A 188 AHGARYRG--RR-I-G-AGSSVAAFSFYPGKNLGCFGDGGAV 224 (399)
T ss_dssp CTTCEETT--EE-T-T-CTTCEEEEECCTTSSSCCSSCCEEE
T ss_pred cccCccCC--ee-c-c-cccCEEEEeCCCCccCCcCCceEEE
Confidence 86543321 11 1 1 12589999985 999864344543
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-11 Score=136.99 Aligned_cols=180 Identities=14% Similarity=0.106 Sum_probs=130.4
Q ss_pred hHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecC
Q psy13453 559 ACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSD 638 (764)
Q Consensus 559 ~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~ 638 (764)
...++++.+.+|+.+.+|++.. ......++|+|+|+++..++.+.+. ++..|+++.
T Consensus 84 g~~~lr~~la~~~~~~~g~~~~-----~~~~~i~~~~G~~~ai~~~~~~~~~-------------------~gd~Vl~~~ 139 (428)
T 1iay_A 84 GLPEFRKAIAKFMEKTRGGRVR-----FDPERVVMAGGATGANETIIFCLAD-------------------PGDAFLVPS 139 (428)
T ss_dssp CCHHHHHHHHHHHHHHTTTCSC-----CCTTSCEEEEHHHHHHHHHHHHHCC-------------------TTCEEEEES
T ss_pred CcHHHHHHHHHHHHHhcCCCCC-----CChhhEEEccChHHHHHHHHHHhCC-------------------CCCeEEEcc
Confidence 4678999999999998885411 0113578999999999888775421 112477788
Q ss_pred CcchhHHHHH-HhCCCceEEEecCC--CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc---HHHHHHHHHh
Q psy13453 639 QSNSSVEKSA-IIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN---LEELGPICQE 712 (764)
Q Consensus 639 ~aH~Sv~kAa-~~lGl~v~~Vp~d~--~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp---l~eIa~i~~~ 712 (764)
-+|.+...++ ...|++++.+|.+. ++.+|+++|+++|++..+.+..+-+|+.+..++.+|.+-| +++|+++|++
T Consensus 140 p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~ 219 (428)
T 1iay_A 140 PYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQ 219 (428)
T ss_dssp SCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHT
T ss_pred CCCcchHHHHHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHH
Confidence 8898887755 46799999999873 4589999999999876555555667777888889999988 9999999999
Q ss_pred cCCEEEEeccccccccccc---hhhhhhc-----CCCccc--EEEEcCCccCCCC-cCceee
Q psy13453 713 YNIWLHVDAAYAGSALLLP---EYAHLKR-----GLEYVD--SFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 713 ~glwLHVDaA~Gg~~l~~~---~~r~~l~-----gie~aD--Sit~d~HK~l~~P-~~~g~l 763 (764)
||+|+++|.||+++..-.. ....... ++ .+| -+..++||+++.| +-+|++
T Consensus 220 ~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~viv~~s~sK~~g~~Glr~G~~ 280 (428)
T 1iay_A 220 HNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYC-NKDLVHIVYSLSKDMGLPGFRVGII 280 (428)
T ss_dssp TTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTS-CTTSEEEEEESTTTSSCGGGCEEEE
T ss_pred CCeEEEEeccccccccCCCCccCHHHhccccccccC-CCCcEEEEecchhhcCCCCceEEEE
Confidence 9999999999998533211 1111111 11 157 5789999999754 234554
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.9e-11 Score=135.08 Aligned_cols=170 Identities=12% Similarity=0.051 Sum_probs=118.0
Q ss_pred cccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCce
Q psy13453 553 SWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKL 632 (764)
Q Consensus 553 ~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~ 632 (764)
.|..++...++++ .+++++|.+ ..+||+|||+|+..++.++. . . ++
T Consensus 70 ~y~~~~~~~~l~~----~la~~~~~~-----------~~~~~~~gt~a~~~al~~l~----~----~----------gd- 115 (456)
T 2ez2_A 70 AYAGSENFYHLER----TVQELFGFK-----------HIVPTHQGRGAENLLSQLAI----K----P----------GQ- 115 (456)
T ss_dssp CSSSCHHHHHHHH----HHHHHHCCS-----------EEEEESSHHHHHHHHHHHHC----C----T----------TC-
T ss_pred hcccChhHHHHHH----HHHHHhCCC-----------cEEEeCCcHHHHHHHHHHhC----C----C----------CC-
Confidence 3445566666655 556666653 47999999999998887651 1 0 13
Q ss_pred EEEecCCcc-hhHHHHHHhCCCceEEEecCC----------CCcccHHHHHHHHHHhhhcCCCceEEEEeeccC-Ccccc
Q psy13453 633 VAYTSDQSN-SSVEKSAIIGDVPVRQLRSDD----------NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTT-GTCAF 700 (764)
Q Consensus 633 vi~~S~~aH-~Sv~kAa~~lGl~v~~Vp~d~----------~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT-~~Gai 700 (764)
+++..+| .+...++...|..++.+++++ ++.+|+++|+++|++... ..+.+|+.+..++ .+|.+
T Consensus 116 --i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~--~~~~~v~l~~p~n~ptG~~ 191 (456)
T 2ez2_A 116 --YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGA--ENIAYICLAVTVNLAGGQP 191 (456)
T ss_dssp --EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCG--GGEEEEEEESSBTTTTSBC
T ss_pred --EeccccccchhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccc--cceeEEEEeccCCCCCCcc
Confidence 3456667 787888999999999999873 278999999999986531 1234666665665 78877
Q ss_pred cc---HHHHHHHHHhcCCEEEEecccccc---------ccccchhh-h---hhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 701 DN---LEELGPICQEYNIWLHVDAAYAGS---------ALLLPEYA-H---LKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 701 Dp---l~eIa~i~~~~glwLHVDaA~Gg~---------~l~~~~~r-~---~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
-+ +++|+++|++||+|+|+|.+|+.+ ..+....- . .+ + ..+|.+++++||+++.| ..|++
T Consensus 192 ~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~-~-~~~d~~~~S~kk~~~~~-~gG~~ 267 (456)
T 2ez2_A 192 VSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEM-F-SYADGCTMSGKKDCLVN-IGGFL 267 (456)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHH-H-TTCSEEEEETTTTTCCS-SCEEE
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhh-c-ccCCEEEEeCcccCCCC-ceeEE
Confidence 54 999999999999999999999864 11211100 0 01 1 23689999999998866 35654
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-11 Score=134.53 Aligned_cols=178 Identities=10% Similarity=0.016 Sum_probs=131.8
Q ss_pred cccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCc-
Q psy13453 553 SWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK- 631 (764)
Q Consensus 553 ~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~- 631 (764)
.|...+...++.+.+.+|+.+.+|++.+ ....+||+|||+++..++.+... +.
T Consensus 71 ~y~~~~g~~~lr~~la~~l~~~~g~~~~-------~~~i~~~~g~~~al~~~~~~l~~-------------------~g~ 124 (398)
T 3ele_A 71 GYTSAQGDVETRAAIAEFLNNTHGTHFN-------ADNLYMTMGAAASLSICFRALTS-------------------DAY 124 (398)
T ss_dssp SCCCTTCCHHHHHHHHHHHHHHHCCCCC-------GGGEEEESSHHHHHHHHHHHHCC-------------------STT
T ss_pred CcCCCCCcHHHHHHHHHHHHHHhCCCCC-------hHHEEEccCHHHHHHHHHHHHcC-------------------CCC
Confidence 3444455578999999999999986432 24689999999999888775411 12
Q ss_pred eEEEecCCcchhHHHHHHhCCCceEEEecCC-CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc---HHHHH
Q psy13453 632 LVAYTSDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN---LEELG 707 (764)
Q Consensus 632 ~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~-~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp---l~eIa 707 (764)
..|++..-+|.++..++...|.+++.+|.++ ++.+|+++|++++++. +-+|+.+..++.+|.+-+ +.+|+
T Consensus 125 d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~nptG~~~~~~~l~~l~ 198 (398)
T 3ele_A 125 DEFITIAPYFPEYKVFVNAAGARLVEVPADTEHFQIDFDALEERINAH------TRGVIINSPNNPSGTVYSEETIKKLS 198 (398)
T ss_dssp CEEEEESSCCTHHHHHHHHTTCEEEEECCCTTTSSCCHHHHHHTCCTT------EEEEEECSSCTTTCCCCCHHHHHHHH
T ss_pred CEEEEeCCCchhhHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhCcC------CCEEEEcCCCCCCCCCCCHHHHHHHH
Confidence 2577888899999999999999999999985 5689999999988643 447777788999999876 77777
Q ss_pred HHHHh------cCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCC-CCcCceee
Q psy13453 708 PICQE------YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLL-VNFDCSAM 763 (764)
Q Consensus 708 ~i~~~------~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~-~P~~~g~l 763 (764)
++|++ ||+|+++|.+|+.+..-........ .....+-+..++||+++ ....+|.+
T Consensus 199 ~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~G~r~G~~ 260 (398)
T 3ele_A 199 DLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVT-KYYDNTLVCYSYSKSLSLPGERIGYV 260 (398)
T ss_dssp HHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGG-GTCSSEEEEEESTTTSSCTTTCCEEE
T ss_pred HHHHhhhhccCCCeEEEEeccccccccCCCCcCChH-hhcCCeEEEEehhhcCCCccceeEEE
Confidence 89999 9999999999987543211111111 11123677889999997 44556665
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=6.1e-12 Score=137.19 Aligned_cols=154 Identities=14% Similarity=0.093 Sum_probs=116.1
Q ss_pred HHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhH
Q psy13453 565 VLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV 644 (764)
Q Consensus 565 ~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv 644 (764)
.++.+.+++++|.+ ..++|+|||+|+..++.+.+ . .++..|++++.+|.+.
T Consensus 42 ~~l~~~la~~~~~~-----------~~~~~~~gt~al~~~~~~~~---~---------------~~gd~Vl~~~~~~~~~ 92 (393)
T 1mdo_A 42 QELEAAFCRLTGNQ-----------YAVAVSSATAGMHIALMALG---I---------------GEGDEVITPSMTWVST 92 (393)
T ss_dssp HHHHHHHHHHHCCS-----------EEEEESCHHHHHHHHHHHTT---C---------------CTTCEEEEESSSCHHH
T ss_pred HHHHHHHHHHhCCC-----------cEEEecChHHHHHHHHHHcC---C---------------CCCCEEEeCCCccHhH
Confidence 34445666666653 37899999999988887542 0 0123588899999999
Q ss_pred HHHHHhCCCceEEEecCCC-CcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccc
Q psy13453 645 EKSAIIGDVPVRQLRSDDN-GVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAY 723 (764)
Q Consensus 645 ~kAa~~lGl~v~~Vp~d~~-g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~ 723 (764)
..+++..|++++.+|++++ +.+|+++|+++|++. +-+|+.+ +.+|.+.|+++|+++|++||+|+++|+||
T Consensus 93 ~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~------~~~v~~~---~~~G~~~~~~~i~~l~~~~~~~li~D~a~ 163 (393)
T 1mdo_A 93 LNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQ------TKAIIPV---HYAGAPADLDAIYALGERYGIPVIEDAAH 163 (393)
T ss_dssp HHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTT------EEEECCB---CGGGCCCCHHHHHHHHHHHTCCBCEECTT
T ss_pred HHHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCCC------ceEEEEe---CCCCCcCCHHHHHHHHHHcCCeEEEECcc
Confidence 9999999999999999865 789999999998643 3355543 46899999999999999999999999999
Q ss_pred cccccccchhhhhhcCCCcccEEEEcCC--ccCCCCcCceee
Q psy13453 724 AGSALLLPEYAHLKRGLEYVDSFDFNTH--KWLLVNFDCSAM 763 (764)
Q Consensus 724 Gg~~l~~~~~r~~l~gie~aDSit~d~H--K~l~~P~~~g~l 763 (764)
+.+..+.. +. + +. .|.++.++| |+++.+ .+|++
T Consensus 164 ~~g~~~~~--~~-~-~~--~d~~~~S~~k~K~l~~~-~~g~~ 198 (393)
T 1mdo_A 164 ATGTSYKG--RH-I-GA--RGTAIFSFHAIKNITCA-EGGIV 198 (393)
T ss_dssp CTTCEETT--EE-T-TS--SSEEEEECCTTSSSCSS-SCEEE
T ss_pred ccCCeECC--ee-c-CC--CCeEEEeCCCCCccccc-cceEE
Confidence 86443321 11 1 21 699999999 999754 44544
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-11 Score=135.52 Aligned_cols=191 Identities=7% Similarity=-0.082 Sum_probs=133.1
Q ss_pred HHHHHHHHhhcccCccccCCchHHH-HHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhh
Q psy13453 538 IVGDMLSGAFGLIGFSWLSSPACTE-LEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHW 616 (764)
Q Consensus 538 ~lad~l~~~lN~n~~~~~~sp~~t~-lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~ 616 (764)
.+.+.+...++.....|... ..+ +++.+.+|+.+.+|++.+ ....++|+|||+++..++.+...
T Consensus 45 ~v~~a~~~~~~~~~~~y~~~--~~~~lr~~la~~l~~~~g~~~~-------~~~v~~t~g~~~al~~~~~~l~~------ 109 (390)
T 1d2f_A 45 CIIEALNQRLMHGVFGYSRW--KNDEFLAAIAHWFSTQHYTAID-------SQTVVYGPSVIYMVSELIRQWSE------ 109 (390)
T ss_dssp HHHHHHHHHHTTCCCCCCCS--CCHHHHHHHHHHHHHHSCCCCC-------GGGEEEESCHHHHHHHHHHHSSC------
T ss_pred HHHHHHHHHHhCCCCCCCCC--ChHHHHHHHHHHHHHhcCCCCC-------HHHEEEcCCHHHHHHHHHHHhcC------
Confidence 34445555554333334332 556 888899999988885432 13679999999998887764311
Q ss_pred ccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCCC---CcccHHHHHHHHHHhhhcCCCceEEEEeec
Q psy13453 617 QSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDN---GVLRGDALLTAVKEDLAKGLIPCCLIATLG 693 (764)
Q Consensus 617 ~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~---g~md~~~Le~~I~~~~~~G~~p~~VvataG 693 (764)
++..|++..-+|.+...++...|.+++.+|.+.+ +.+|+++|+++|++. .+-+|+.+..
T Consensus 110 -------------~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~-----~~~~v~l~~p 171 (390)
T 1d2f_A 110 -------------TGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKP-----ECKIMLLCSP 171 (390)
T ss_dssp -------------TTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTST-----TEEEEEEESS
T ss_pred -------------CCCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhccC-----CCeEEEEeCC
Confidence 1124777888999999999999999999998743 369999999998641 2446677788
Q ss_pred cCCcccccc---HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCC-c-ccEEEEcCCccCCCC-cCceee
Q psy13453 694 TTGTCAFDN---LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLE-Y-VDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 694 TT~~GaiDp---l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie-~-aDSit~d~HK~l~~P-~~~g~l 763 (764)
++.+|.+-| +++|+++|++||+|+++|.+|+.+..-...... +.++. . .|. ..++||+++.| +.+|++
T Consensus 172 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~-~~~~~~~~~d~-~~s~sK~~~~~G~r~G~~ 245 (390)
T 1d2f_A 172 QNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIP-WSNVARGDWAL-LTSGSKSFNIPALTGAYG 245 (390)
T ss_dssp CTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCC-GGGTCCSSEEE-EECSHHHHTCGGGCCEEE
T ss_pred CCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcC-HHHcchhhHhh-ccCccHhhcccChhheEE
Confidence 899999855 899999999999999999999985432111111 11221 1 255 99999999743 345654
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.31 E-value=8.2e-12 Score=134.49 Aligned_cols=160 Identities=14% Similarity=0.110 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchh
Q psy13453 564 EVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSS 643 (764)
Q Consensus 564 E~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~S 643 (764)
..++.+++++++|.+. .+|++|||+++..++.++...- .+.+|+++...|++
T Consensus 50 ~~~l~~~la~~~~~~~-----------~i~~~~g~~a~~~a~~~~~~~g-----------------~~~vvi~~~~~~~~ 101 (359)
T 3pj0_A 50 IEDFETKIAKILGKQS-----------AVFFPSGTMAQQIALRIWADRK-----------------ENRRVAYHPLSHLE 101 (359)
T ss_dssp HHHHHHHHHHHHTCSE-----------EEEESCHHHHHHHHHHHHHHHH-----------------TCCEEEECTTCHHH
T ss_pred HHHHHHHHHHHhCCCc-----------EEEeCCHHHHHHHHHHHHHhcC-----------------CCcEEEEeccceee
Confidence 3445568888888754 4788999999998888765431 02257778888887
Q ss_pred HHHH---HHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCc-ccccc---HHHHHHHHHhcCCE
Q psy13453 644 VEKS---AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGT-CAFDN---LEELGPICQEYNIW 716 (764)
Q Consensus 644 v~kA---a~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~-GaiDp---l~eIa~i~~~~glw 716 (764)
.... +...|..++.+|. +++.+|+++|+++ .+ .+-+|+.+..++.+ |.+-| +++|+++|++||+|
T Consensus 102 ~~~~~~~~~~~g~~~~~v~~-~~~~~d~~~l~~~-~~------~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~ 173 (359)
T 3pj0_A 102 IHEQDGLKELQQITPLLLGT-ANQLLTIDDIKSL-RE------PVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGIS 173 (359)
T ss_dssp HSSTTHHHHHHCCEEEECSC-TTSCCCHHHHHTC-SS------CCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCE
T ss_pred ehhcchHHHhcCceEEecCC-cCCCcCHHHHHhc-cC------CceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCE
Confidence 6543 2456888888887 5789999999887 21 24466666665555 67755 55559999999999
Q ss_pred EEEecccccccccc--chhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 717 LHVDAAYAGSALLL--PEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 717 LHVDaA~Gg~~l~~--~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
+|+|+||..+.... ....... ..+|.+++++||+++.|.+ |++
T Consensus 174 li~D~a~~~~~~~~~~~~~~~~~---~~~d~~~~s~sK~~~~~~g-g~~ 218 (359)
T 3pj0_A 174 LHLDGARLWEITPFYQKSAEEIC---ALFDSVYVSFYKGIGGIAG-AIL 218 (359)
T ss_dssp EEEEETTCGGGHHHHTCCHHHHH---TTCSEEEEESSSTTCCSSC-EEE
T ss_pred EEEECcchhcchhhhCCCHHHhh---ccCCEEEEeccccCCCcce-EEE
Confidence 99999986543211 1112222 3459999999999998866 554
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-11 Score=137.14 Aligned_cols=152 Identities=9% Similarity=0.009 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchh
Q psy13453 564 EVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSS 643 (764)
Q Consensus 564 E~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~S 643 (764)
-.++.+++++++|.+ ..++++||++++..++.+.. . ++..|+++..+|.+
T Consensus 64 ~~~l~~~ia~~~g~~-----------~~i~~~~g~~ai~~~~~~l~----~---------------~gd~Vl~~~~~y~~ 113 (404)
T 1e5e_A 64 VSNLEGKIAFLEKTE-----------ACVATSSGMGAIAATVLTIL----K---------------AGDHLISDECLYGC 113 (404)
T ss_dssp HHHHHHHHHHHHTCS-----------EEEEESSHHHHHHHHHHHHC----C---------------TTCEEEEESCCCHH
T ss_pred HHHHHHHHHHHhCCC-----------cEEEeCChHHHHHHHHHHHh----C---------------CCCEEEEeCCCchh
Confidence 334556677777774 36788899999888776431 1 12257788999998
Q ss_pred HHH----HHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHh-cCCEEE
Q psy13453 644 VEK----SAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQE-YNIWLH 718 (764)
Q Consensus 644 v~k----Aa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~-~glwLH 718 (764)
... .+...|+.++.+|.+ |+++|+++|++. +-+|+.+..++.+|.+.|+++|+++|++ ||+|++
T Consensus 114 ~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~------t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li 182 (404)
T 1e5e_A 114 THALFEHALTKFGIQVDFINTA-----IPGEVKKHMKPN------TKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVI 182 (404)
T ss_dssp HHHHHHTHHHHTTCEEEEECTT-----STTHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEE
T ss_pred HHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcCCC------CcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEE
Confidence 888 677889999999876 788999888643 4588888999999999999999999999 999999
Q ss_pred EeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcC--ceee
Q psy13453 719 VDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD--CSAM 763 (764)
Q Consensus 719 VDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~--~g~l 763 (764)
+|.+|+.+....+- . + .+|.+..++||+++.|.+ +|++
T Consensus 183 ~De~~~~~~~~~~~-~--~----~~di~~~S~sK~~~~~g~ri~G~~ 222 (404)
T 1e5e_A 183 ADNTFCSPMITNPV-D--F----GVDVVVHSATKYINGHTDVVAGLI 222 (404)
T ss_dssp EECTTTCTTTCCGG-G--G----TCSEEEEETTTTTTCSSCCCCEEE
T ss_pred EECCCchhhhCCcc-c--c----CCEEEEEcCccccCCCCCCeEEEE
Confidence 99999987643221 1 1 369999999999998876 5765
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.1e-11 Score=133.62 Aligned_cols=152 Identities=16% Similarity=0.097 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchh
Q psy13453 564 EVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSS 643 (764)
Q Consensus 564 E~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~S 643 (764)
..++.+.+++++|.++ .+++++||+|+..++.++. . ++..|+++..+|.+
T Consensus 54 ~~~l~~~la~~~~~~~-----------~i~~~sGt~a~~~~~~~~~----~---------------~g~~vl~~~~~~~~ 103 (386)
T 1cs1_A 54 RDVVQRALAELEGGAG-----------AVLTNTGMSAIHLVTTVFL----K---------------PGDLLVAPHDCYGG 103 (386)
T ss_dssp HHHHHHHHHHHHTCSE-----------EEEESSHHHHHHHHHHHHC----C---------------TTCEEEEETTCCHH
T ss_pred HHHHHHHHHHHhCCCc-----------EEEeCCHHHHHHHHHHHHh----C---------------CCCEEEEecCCcHh
Confidence 3344556677777642 4555666999988877651 1 11247778888887
Q ss_pred HHHH----HHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEE
Q psy13453 644 VEKS----AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHV 719 (764)
Q Consensus 644 v~kA----a~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHV 719 (764)
+..+ +...|++++.+|.+ |+++|+++|+++ +.+|+.+..++.+|.+.|+++|+++|++||+|+|+
T Consensus 104 ~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~ 172 (386)
T 1cs1_A 104 SYRLFDSLAKRGCYRVLFVDQG-----DEQALRAALAEK------PKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVV 172 (386)
T ss_dssp HHHHHHHHHTTTSCEEEEECTT-----CHHHHHHHHHTC------CSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHhcCCEEEEeCCC-----CHHHHHHhhccC------CcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEE
Confidence 6554 35578888888874 899999999753 45788889999999999999999999999999999
Q ss_pred eccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCc--eee
Q psy13453 720 DAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDC--SAM 763 (764)
Q Consensus 720 DaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~--g~l 763 (764)
|.+|+++....+. . . .+|.++.++||+++.|.+. |++
T Consensus 173 De~~~~~~~~~~~-~---~---~~di~~~s~sK~~~~~~~~~~G~~ 211 (386)
T 1cs1_A 173 DNTFLSPALQNPL-A---L---GADLVLHSCTKYLNGHSDVVAGVV 211 (386)
T ss_dssp ECTTTCTTTCCGG-G---G---TCSEEEEETTTTTTCSSCCCCEEE
T ss_pred ECCCcccccCCcc-c---c---CceEEEEcCcccccCCCCceeEEE
Confidence 9999987654321 1 1 3599999999999999874 765
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.30 E-value=4e-11 Score=131.86 Aligned_cols=165 Identities=14% Similarity=0.083 Sum_probs=118.1
Q ss_pred CchHHHHHHHHHHHH-HHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 557 SPACTELEVLVMNWL-GKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 557 sp~~t~lE~~v~~~l-a~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
+|...++|+. + ++++|.. ...++|+|||+|+..++.+.. . .+.-.|+
T Consensus 35 ~~~~~~l~~~----~~a~~~g~~----------~~~v~~~sgt~al~~al~~l~---~---------------~~Gd~Vi 82 (377)
T 3ju7_A 35 GPINQRFEQT----IMSGFFQNR----------GAVTTVANATLGLMAAIQLKK---R---------------KKGKYAL 82 (377)
T ss_dssp CHHHHHHHHH----HHHHTSTTC----------SEEEEESCHHHHHHHHHHHHS---C---------------TTCCEEE
T ss_pred CHHHHHHHHH----HHHHHhCCC----------CeEEEeCCHHHHHHHHHHHcC---C---------------CCcCEEE
Confidence 5666666664 5 7777722 247999999999988876530 0 1123588
Q ss_pred ecCCcchhHHHHHHhCCCceEEEecC-CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcC
Q psy13453 636 TSDQSNSSVEKSAIIGDVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYN 714 (764)
Q Consensus 636 ~S~~aH~Sv~kAa~~lGl~v~~Vp~d-~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~g 714 (764)
++..+|.+...++...|..++.++++ +++.+|+++|+++|..... .+-+|+ .++.+|...|+++|+++|+ ||
T Consensus 83 ~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~---~tk~v~---~~~~~G~~~~~~~i~~la~-~~ 155 (377)
T 3ju7_A 83 MPSFTFPATPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKE---EVAIVV---PYATFGSWMNLEEYEELEK-KG 155 (377)
T ss_dssp EESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGG---GEEEEC---CBCGGGBCCCCHHHHHHHH-TT
T ss_pred ECCCCcHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCC---CceEEE---EECCCCCccCHHHHHHHHh-cC
Confidence 99999999999999999999999998 6789999999999943210 122444 3566899999999999999 99
Q ss_pred CEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 715 IWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 715 lwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
+++|+|+||+.+...-. +..-..+..++.+++++||+++.+ ..|++
T Consensus 156 ~~vi~D~a~a~g~~~~~--~~~g~~~~d~~~~S~~~~K~l~~g-~gG~~ 201 (377)
T 3ju7_A 156 VPVVVDAAPGFGLMNGG--MHYGQDFSGMIIYSFHATKPFGIG-EGGLI 201 (377)
T ss_dssp CCBEEECTTCTTCEETT--EETTTTCSSEEEEECBTTSSSCCB-SCEEE
T ss_pred CEEEEECCCccCCeECC--EeccCCCCcEEEEECCCCCcCCCC-CcEEE
Confidence 99999999986543221 111011224567777789999874 44443
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-11 Score=135.83 Aligned_cols=165 Identities=13% Similarity=0.127 Sum_probs=111.0
Q ss_pred hHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecC
Q psy13453 559 ACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSD 638 (764)
Q Consensus 559 ~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~ 638 (764)
....+|..+.+++++++|.+.. -+++++||++|..++.+... ++..|+++.
T Consensus 73 ~~~~~~~~~~~~la~~~~~~~~----------~v~~~sGs~a~~~a~~~~~~-------------------~gd~v~~~~ 123 (420)
T 3gbx_A 73 YVDVVEQLAIDRAKELFGADYA----------NVQPHSGSQANFAVYTALLQ-------------------PGDTVLGMN 123 (420)
T ss_dssp -CHHHHHHHHHHHHHHHTCSEE----------ECCCSSHHHHHHHHHHHHCC-------------------TTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCc----------eeEecCcHHHHHHHHHHhcC-------------------CCCEEEecc
Confidence 3456788888999999998653 34456669998888765411 122577788
Q ss_pred CcchhHHHHH---HhCCC--ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhc
Q psy13453 639 QSNSSVEKSA---IIGDV--PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEY 713 (764)
Q Consensus 639 ~aH~Sv~kAa---~~lGl--~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~ 713 (764)
.+|.+..... ...|. ....++.++++.+|+++|+++|++. .+.+|+.+.++ .|...|+++|+++|++|
T Consensus 124 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~--~~~~~~l~~l~~l~~~~ 196 (420)
T 3gbx_A 124 LAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKEH-----KPKMIIGGFSA--YSGVVDWAKMREIADSI 196 (420)
T ss_dssp EC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHHH-----CCSEEEECCTT--CCSCCCHHHHHHHHHHT
T ss_pred hhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHhc-----CCeEEEEecCc--cCCccCHHHHHHHHHHc
Confidence 8887744221 22333 4456677888999999999999874 13466665544 36788999999999999
Q ss_pred CCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 714 NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 714 glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
|+|+++|.+|+.+......+... ++.+|.++.++||+++.|.+ |++
T Consensus 197 ~~~li~De~~~~~~~~~~~~~~~---~~~~di~~~s~sK~~~g~~g-g~~ 242 (420)
T 3gbx_A 197 GAYLFVDMAHVAGLIAAGVYPNP---VPHAHVVTTTTHKTLAGPRG-GLI 242 (420)
T ss_dssp TCEEEEECTTTHHHHHTTSSCCS---TTTSSEEEEESSGGGCSCSC-EEE
T ss_pred CCEEEEECCcchhceecccCCcc---cccCCEEEeecccCCCCCCc-eEE
Confidence 99999999987655433222222 23479999999999977775 554
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2e-12 Score=139.13 Aligned_cols=162 Identities=14% Similarity=-0.034 Sum_probs=120.0
Q ss_pred CchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCCh-HHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 557 SPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTA-SEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 557 sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGg-TeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
++....+..++.+++++++|.++. ...+||+|+ |+++..++.+.... + .+...|+
T Consensus 43 ~~~~~~~~~~l~~~la~~~g~~~~--------~~v~~~~g~gt~al~~~~~~l~~~---------------~-~~g~~vi 98 (360)
T 1w23_A 43 SQSYEEVHEQAQNLLRELLQIPND--------YQILFLQGGASLQFTMLPMNLLTK---------------G-TIGNYVL 98 (360)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCTT--------EEEEEESSHHHHHHHHHHHHHCCT---------------T-CEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCC--------ceEEEECCcchHHHHHHHHHhcCC---------------C-CcccEEE
Confidence 677777888899999999998631 257899998 99987766533210 0 1133678
Q ss_pred ecCCcchhHHHHHHhCCCceEEEecCC-CCcccHHHHHH-HHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhc
Q psy13453 636 TSDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLT-AVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEY 713 (764)
Q Consensus 636 ~S~~aH~Sv~kAa~~lGl~v~~Vp~d~-~g~md~~~Le~-~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~ 713 (764)
++..+|++.. .+...| +++.||+++ +|.+|+++|++ +|++ .+-+|+.+..++.+|.+-| +|+++|
T Consensus 99 ~~~~~~~~~~-~~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~~------~~k~v~~~~~~nptG~~~~-----~i~~~~ 165 (360)
T 1w23_A 99 TGSWSEKALK-EAKLLG-ETHIAASTKANSYQSIPDFSEFQLNE------NDAYLHITSNNTIYGTQYQ-----NFPEIN 165 (360)
T ss_dssp CSHHHHHHHH-HHHTTS-EEEEEEECGGGTSCSCCCGGGCCCCT------TEEEEEEESEETTTTEECS-----SCCCCC
T ss_pred ecchhHHHHH-HHHHhC-CeEEeecccccCcCCccchHhhccCC------CCCEEEEeCCCCCcceecc-----cccccC
Confidence 8888998854 456789 999999985 77899999988 7633 2457888888999999844 344589
Q ss_pred CCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 714 NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 714 glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
|+|+++|+||+.+....+ +..+ |.++.++||+++ |.|+|+++
T Consensus 166 ~~~li~D~a~~~~~~~~~-----~~~~---di~~~s~sK~~~-~~G~G~~~ 207 (360)
T 1w23_A 166 HAPLIADMSSDILSRPLK-----VNQF---GMIYAGAQKNLG-PSGVTVVI 207 (360)
T ss_dssp SSCEEEECTTTTTSSCCC-----GGGC---SEEEEETTTTTS-CTTCEEEE
T ss_pred CceEEEechhhcCCCCcC-----cccC---CEEEEEcccccC-CCCcEEEE
Confidence 999999999987653321 1222 899999999887 77888764
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.29 E-value=2.3e-11 Score=131.35 Aligned_cols=163 Identities=13% Similarity=0.061 Sum_probs=122.8
Q ss_pred HHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhH
Q psy13453 565 VLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV 644 (764)
Q Consensus 565 ~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv 644 (764)
.++.+++++++|.+++ ..+||+|||+++..++.+.. . ++..|+++..+|.++
T Consensus 70 ~~lr~~la~~~~~~~~---------~v~~~~g~t~a~~~~~~~~~----~---------------~gd~vl~~~~~~~~~ 121 (363)
T 3ffh_A 70 SSLRKEVADFYQLEEE---------ELIFTAGVDELIELLTRVLL----D---------------TTTNTVMATPTFVQY 121 (363)
T ss_dssp HHHHHHHHHHHTCCGG---------GEEEESSHHHHHHHHHHHHC----S---------------TTCEEEEEESSCHHH
T ss_pred HHHHHHHHHHhCCChh---------hEEEeCCHHHHHHHHHHHHc----c---------------CCCEEEEcCCChHHH
Confidence 4566788888887653 68999999999988876531 1 112577788899999
Q ss_pred HHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhc--CCEEEEecc
Q psy13453 645 EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEY--NIWLHVDAA 722 (764)
Q Consensus 645 ~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~--glwLHVDaA 722 (764)
..++...|.+++.+|.++++.+|+++|++++++. +-+|+.+..++.+|.+-|+++|.++|+.+ |+|+|+|.+
T Consensus 122 ~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~------~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~ 195 (363)
T 3ffh_A 122 RQNALIEGAEVREIPLLQDGEHDLEGMLNAIDEK------TTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEA 195 (363)
T ss_dssp HHHHHHHTCEEEEEECCTTSCCCHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECT
T ss_pred HHHHHHcCCEEEEecCCCCCCcCHHHHHHhcccC------CCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCc
Confidence 9999999999999999988999999999998643 45777888999999999999999999888 999999999
Q ss_pred ccccccccchhhhhh--cCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 723 YAGSALLLPEYAHLK--RGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 723 ~Gg~~l~~~~~r~~l--~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
|+.+.. .+....+ .+...-+-+..+++|+++.| ..+|++
T Consensus 196 ~~~~~~--~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~ 237 (363)
T 3ffh_A 196 YIEYVT--PQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYG 237 (363)
T ss_dssp TGGGCS--SCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEE
T ss_pred hHhhcC--ccccCHHHHhhcCCCEEEEeechhhhcCchhceeee
Confidence 996543 1111111 01112245677999998733 334654
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.29 E-value=5.9e-11 Score=135.31 Aligned_cols=154 Identities=12% Similarity=0.099 Sum_probs=125.4
Q ss_pred cCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCcccccc
Q psy13453 550 IGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIR 629 (764)
Q Consensus 550 n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~ 629 (764)
....|..++....+.+.+.+|+.+..|++.+ ....++|+|+|+++..++.+... .
T Consensus 126 ~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~-------~~~i~~t~G~~~al~~~~~~l~~----~-------------- 180 (500)
T 3tcm_A 126 ATGAYSHSQGIHGLRDAIASGIASRDGFPAN-------ADDIFLTDGASPGVHLMMQLLIR----N-------------- 180 (500)
T ss_dssp CSSSCCCTTCCHHHHHHHHHHHHHHHSSCCC-------GGGEEEESSSHHHHHHHHHHHCC----S--------------
T ss_pred cCCCcCCCcChHHHHHHHHHHHHhhcCCCCC-------cccEEEcCCHHHHHHHHHHHHcC----C--------------
Confidence 3456677777889999999999998886532 24689999999998877764310 0
Q ss_pred CceEEEecCCcchhHHHHHHhCCCceEEEecCCC--CcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccHH
Q psy13453 630 NKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDN--GVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLE 704 (764)
Q Consensus 630 ~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~--g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~ 704 (764)
+...|+++.-+|.++..++...|.+++.+|++++ +.+|+++|+++|++..++|..+-+|+.+..++.||.+ ++++
T Consensus 181 ~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~ 260 (500)
T 3tcm_A 181 EKDGILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQY 260 (500)
T ss_dssp TTEEEEEEESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHH
T ss_pred CCCEEEEeCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHH
Confidence 1236888999999999999999999999999854 5899999999999877777677777888889999998 6688
Q ss_pred HHHHHHHhcCCEEEEecccccccc
Q psy13453 705 ELGPICQEYNIWLHVDAAYAGSAL 728 (764)
Q Consensus 705 eIa~i~~~~glwLHVDaA~Gg~~l 728 (764)
+|+++|++||+|+++|.+|+....
T Consensus 261 ~i~~la~~~~~~li~Deay~~~~~ 284 (500)
T 3tcm_A 261 DIVKFCKNEGLVLLADEVYQENIY 284 (500)
T ss_dssp HHHHHHHHHTCEEEEECTTTTCBC
T ss_pred HHHHHHHHcCCEEEEecCcccccc
Confidence 888889999999999999987543
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3e-11 Score=132.39 Aligned_cols=188 Identities=13% Similarity=0.057 Sum_probs=124.6
Q ss_pred HHHHHHHHHhhccc---CccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHh
Q psy13453 537 SIVGDMLSGAFGLI---GFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMI 613 (764)
Q Consensus 537 ~~lad~l~~~lN~n---~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~ 613 (764)
..+.+.+...+... ...|...+...++++.+.+|+ |.++ ...++|+|+|+++..++.+..
T Consensus 50 ~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~----g~~~---------~~v~~~~g~~~al~~~~~~~~---- 112 (397)
T 2zyj_A 50 EEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEWI----GVRP---------EEVLITTGSQQALDLVGKVFL---- 112 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHH----TSCG---------GGEEEESHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHHHh----CCCh---------hhEEEeccHHHHHHHHHHHhC----
Confidence 34444444444321 233433344556666555554 6544 367899999999888776541
Q ss_pred hhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEE-EEee
Q psy13453 614 NHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCL-IATL 692 (764)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~V-vata 692 (764)
. ++..|++..-+|.+...++...|.+++.+|.++++ +|+++|+++|++. .+-+| +.+.
T Consensus 113 ~---------------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~-~d~~~l~~~l~~~-----~~~~v~~~~~ 171 (397)
T 2zyj_A 113 D---------------EGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEEG-PDLDALEEVLKRE-----RPRFLYLIPS 171 (397)
T ss_dssp C---------------TTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTE-ECHHHHHHHHHHC-----CCSCEEECCB
T ss_pred C---------------CCCEEEEeCCCcHHHHHHHHHcCCEEEecCcCCCC-CCHHHHHHHHhhc-----CCeEEEECCC
Confidence 1 11246778888999999999999999999998766 9999999999762 12244 4567
Q ss_pred ccCCcccccc---HHHHHHHHHhcCCEEEEeccccccccccc---hhhhh-hcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 693 GTTGTCAFDN---LEELGPICQEYNIWLHVDAAYAGSALLLP---EYAHL-KRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 693 GTT~~GaiDp---l~eIa~i~~~~glwLHVDaA~Gg~~l~~~---~~r~~-l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
.++.+|.+-| +++|+++|++||+|+++|.+|+.+..-.. ..... ......-.-+..++||+++ | +.+|++
T Consensus 172 ~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~ 249 (397)
T 2zyj_A 172 FQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLS-PGLRVAFA 249 (397)
T ss_dssp SCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTC-GGGCCEEE
T ss_pred CcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEeccccccc-ccceeEEE
Confidence 7788898865 55899999999999999999998543111 11111 1100011366789999999 5 567765
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.5e-11 Score=143.75 Aligned_cols=166 Identities=15% Similarity=0.135 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchh
Q psy13453 564 EVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSS 643 (764)
Q Consensus 564 E~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~S 643 (764)
-.++.+.+++++|.+.. -++++|+|.||+.++.+.. .+...|+++..+|.|
T Consensus 197 i~eaE~~lA~~fGa~~a----------~~v~nGts~An~~ai~al~-------------------~pGD~VLv~r~~H~S 247 (715)
T 3n75_A 197 HKEAEQYIARVFNADRS----------YMVTNGTSTANKIVGMYSA-------------------PAGSTILIDRNCHKS 247 (715)
T ss_dssp HHHHHHHHHHHHTCSEE----------EEESSHHHHHHHHHHHHHC-------------------CTTCEEEEESSCCHH
T ss_pred HHHHHHHHHHHhCCCCc----------eEECcHHHHHHHHHHHHhC-------------------CCCCEEEECCCccHH
Confidence 44556688999998653 2445665788877766431 123368899999999
Q ss_pred HHHHHHhCCCceEEEecCCC-Cc----c-----cHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhc
Q psy13453 644 VEKSAIIGDVPVRQLRSDDN-GV----L-----RGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEY 713 (764)
Q Consensus 644 v~kAa~~lGl~v~~Vp~d~~-g~----m-----d~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~ 713 (764)
+..++.+.|..++.++++.+ +. + |+++|+++|++... -+.|.+|++|.+ |.+|.+-|+++|+++|+++
T Consensus 248 ~~~~l~lsGa~pv~v~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~-~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~ 325 (715)
T 3n75_A 248 LTHLMMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPN-ATWPVHAVITNS-TYDGLLYNTDFIKKTLDVK 325 (715)
T ss_dssp HHHHHHHSCCEEEEECCCBCTTCCBCCCCGGGGSHHHHHHHHHHSTT-CCSCSEEEEESS-CTTSEEECHHHHHHHCCCS
T ss_pred HHHHHHHcCCEEEEEeccccccccccCcccccCCHHHHHHHHhhCcC-ccCceEEEEECC-CCCCccCCHHHHHHHhCcC
Confidence 99999999999999887532 22 4 89999999987432 123567888888 8899999999999999876
Q ss_pred CCEEEEeccccccccccchhhhhhcCCC---cccEE---EEcCCccCCCCcCceee
Q psy13453 714 NIWLHVDAAYAGSALLLPEYAHLKRGLE---YVDSF---DFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 714 glwLHVDaA~Gg~~l~~~~~r~~l~gie---~aDSi---t~d~HK~l~~P~~~g~l 763 (764)
++|||.||++++.+.|.++.. .++. .+|.+ +.++||+|+++.++|++
T Consensus 326 --~livDEAH~~~~~f~~~~~~~-~al~~g~~aD~vii~~~S~hKtL~gltqgs~i 378 (715)
T 3n75_A 326 --SIHFDSAWVPYTNFSPIYEGK-CGMSGGRVEGKVIYETQSTHKLLAAFSQASMI 378 (715)
T ss_dssp --EEEEECTTCTTGGGSGGGTTS-STTSSSCCTTCEEEEEECHHHHSSCCTTCEEE
T ss_pred --cEEEccccccccccCCccccc-cccccCcCCCEEEEEEecccccccCCCCeeEE
Confidence 489999999887666654321 1221 36876 99999999999888876
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.5e-11 Score=133.86 Aligned_cols=193 Identities=13% Similarity=0.101 Sum_probs=131.7
Q ss_pred HHHHHHHhhccc-CccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCC-CcEEEeCChHHHHHHHHHHHHHHHhhhh
Q psy13453 539 VGDMLSGAFGLI-GFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGP-GGGIIQSTASEATLVSILVAKRKMINHW 616 (764)
Q Consensus 539 lad~l~~~lN~n-~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~-~~GvfTsGgTeANl~Al~aAR~~~~~~~ 616 (764)
+.+.+...+... ...|...+...++++.+.+|+.+.+|.+.+ . ...++|+|||+++..++.+.. .
T Consensus 55 v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~-------~~~~v~~t~g~~~a~~~~~~~~~----~-- 121 (412)
T 2x5d_A 55 IVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQID-------PESEAIVTIGSKEGLAHLMLATL----D-- 121 (412)
T ss_dssp HHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCC-------TTTSEEEESCHHHHHHHHHHHHC----C--
T ss_pred HHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCC-------CCcCEEEcCChHHHHHHHHHHhC----C--
Confidence 444455444332 223443455678999999999888886421 1 258999999999988877541 1
Q ss_pred ccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCCC--CcccHHHHHHHHHHhhhcCCCceEEEEeecc
Q psy13453 617 QSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDN--GVLRGDALLTAVKEDLAKGLIPCCLIATLGT 694 (764)
Q Consensus 617 ~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~--g~md~~~Le~~I~~~~~~G~~p~~VvataGT 694 (764)
++..|++..-+|.+...++...|.+++.+|.+++ +.+|+++|++++++. +-+|+.+..+
T Consensus 122 -------------~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~------~~~v~l~~p~ 182 (412)
T 2x5d_A 122 -------------HGDTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRESIPK------PRMMILGFPS 182 (412)
T ss_dssp -------------TTCEEEEEESCCHHHHHHHHHHTCEEEEEECSTTSCHHHHHHHHHHTEESC------CSEEEEESSC
T ss_pred -------------CCCEEEEcCCCchhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHhcccC------ceEEEECCCC
Confidence 1125778889999999999999999999999864 358999999887532 3466667788
Q ss_pred CCccccc---cHHHHHHHHHhcCCEEEEeccccccccccchhh--hhhcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 695 TGTCAFD---NLEELGPICQEYNIWLHVDAAYAGSALLLPEYA--HLKRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 695 T~~GaiD---pl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r--~~l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
+.+|.+- ++++|+++|++||+|+++|.+|+.+..-..... ..+.+....|-+..++||+++.| +.+|++
T Consensus 183 nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~ 257 (412)
T 2x5d_A 183 NPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFM 257 (412)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEEE
T ss_pred CCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcccceEEE
Confidence 8899884 578899999999999999999998653211111 11122224578899999999743 346665
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=6.1e-11 Score=133.64 Aligned_cols=156 Identities=13% Similarity=0.055 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
..-.++.+++++++|.+. .+++++|++|+..++.+.. . ++..|+++...|
T Consensus 114 ~~~~~l~~~lA~l~g~~~-----------~v~~~sG~~Ai~~al~~l~----~---------------~Gd~Vi~~~~~y 163 (445)
T 1qgn_A 114 PTTVVLEEKISALEGAES-----------TLLMASGMCASTVMLLALV----P---------------AGGHIVTTTDCY 163 (445)
T ss_dssp HHHHHHHHHHHHHHTCSE-----------EEEESCHHHHHHHHHHHHS----C---------------SSCEEEEETTSC
T ss_pred hHHHHHHHHHHHHhCCCc-----------EEEeCCHHHHHHHHHHHHh----C---------------CCCEEEEcCCCc
Confidence 344455567788888742 4677777899888876431 1 112477788888
Q ss_pred hhHHHH----HHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEE
Q psy13453 642 SSVEKS----AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWL 717 (764)
Q Consensus 642 ~Sv~kA----a~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwL 717 (764)
.+.... +...|+.++.||.+ |+++|+++|++++ +-+|++...++.+|.+.|+++|+++|++||+++
T Consensus 164 ~~~~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~ai~~~t-----v~lV~le~p~NptG~v~dl~~I~~la~~~g~~l 233 (445)
T 1qgn_A 164 RKTRIFIETILPKMGITATVIDPA-----DVGALELALNQKK-----VNLFFTESPTNPFLRCVDIELVSKLCHEKGALV 233 (445)
T ss_dssp HHHHHHHHHTGGGGTCEEEEECSS-----CHHHHHHHHHHSC-----EEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEE
T ss_pred hhHHHHHHHHHHHcCCEEEEeCCC-----CHHHHHHHhccCC-----CCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEE
Confidence 877664 34578889988875 8999999998642 248888899999999999999999999999999
Q ss_pred EEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCc--CceeeC
Q psy13453 718 HVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNF--DCSAMW 764 (764)
Q Consensus 718 HVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~--~~g~l~ 764 (764)
|||.+|+.+....+ . .+ .+|.++.++||+++.+. ..|+++
T Consensus 234 ivD~a~~~~~~~~~----~--~~-g~Div~~S~sK~~gg~gd~~~G~l~ 275 (445)
T 1qgn_A 234 CIDGTFATPLNQKA----L--AL-GADLVLHSATKFLGGHNDVLAGCIS 275 (445)
T ss_dssp EEECTTTCTTTCCT----T--TT-TCSEEEECTTTTTTCSSSCCCEEEE
T ss_pred EEECCCcccccCCc----c--cc-CCEEEEECCcccccccccceEEEEE
Confidence 99999987643322 1 11 46999999999998543 267653
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-11 Score=132.03 Aligned_cols=150 Identities=13% Similarity=0.012 Sum_probs=115.2
Q ss_pred HHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHH
Q psy13453 566 LVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVE 645 (764)
Q Consensus 566 ~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~ 645 (764)
++.+.+++++|.+. .+++++||+|+..++.+.. . ++..|+++..+|.+..
T Consensus 2 ~l~~~la~~~g~~~-----------~i~~~sG~~a~~~~~~~~~----~---------------~g~~v~~~~~~~~~~~ 51 (331)
T 1pff_A 2 ALEGKIAKLEHAEA-----------CAATASGMGAIAASVWTFL----K---------------AGDHLISDDCLYGCTH 51 (331)
T ss_dssp HHHHHHHHHHTCSE-----------EEEESSHHHHHHHHHHHHC----C---------------TTCEEEEESCCCHHHH
T ss_pred hHHHHHHHHhCCCe-----------EEEeCChHHHHHHHHHHhc----C---------------CCCEEEEcCCCcchHH
Confidence 34567888888752 4677777999888876541 1 1224778889999887
Q ss_pred HHH----HhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHh-cCCEEEEe
Q psy13453 646 KSA----IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQE-YNIWLHVD 720 (764)
Q Consensus 646 kAa----~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~-~glwLHVD 720 (764)
.++ ...|+.++.+|. +|+++|+++|+++ +-+|+.+..++.+|.+.|+++|+++|++ ||+++|+|
T Consensus 52 ~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~i~~~------~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D 120 (331)
T 1pff_A 52 ALFEHQLRKFGVEVDFIDM-----AVPGNIEKHLKPN------TRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVD 120 (331)
T ss_dssp HHHHTHHHHTTCEEEEECT-----TSTTHHHHTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEE
T ss_pred HHHHHHHHhcCCEEEEeCC-----CCHHHHHHhhcCC------CeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEE
Confidence 765 447888888876 4788898887643 4588889999999999999999999999 99999999
Q ss_pred ccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcC--ceee
Q psy13453 721 AAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD--CSAM 763 (764)
Q Consensus 721 aA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~--~g~l 763 (764)
+||+.+....+. . . .+|.++.++||+++.|.+ +|++
T Consensus 121 ~a~~~~~~~~~~-~---~---~~d~~~~s~~K~~~~~~~r~~G~~ 158 (331)
T 1pff_A 121 NTFASPILTNPL-D---L---GVDIVVHSATKYINGHTDVVAGLV 158 (331)
T ss_dssp CTTTHHHHCCGG-G---G---TCSEEEEETTTTTSSSSSCCCEEE
T ss_pred CCCcccccCChh-h---c---CCcEEEEECccccCCCCCceEEEE
Confidence 999876543321 1 1 369999999999998877 6665
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.2e-11 Score=131.85 Aligned_cols=175 Identities=13% Similarity=0.030 Sum_probs=127.6
Q ss_pred ccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceE
Q psy13453 554 WLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633 (764)
Q Consensus 554 ~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~v 633 (764)
|.......++.+.+.+|+....|.+-+ ....++|+|||+++..++.+.. . ++..
T Consensus 64 y~~~~g~~~lr~~ia~~~~~~~g~~~~-------~~~i~~t~g~~~al~~~~~~l~----~---------------~gd~ 117 (385)
T 1b5p_A 64 YAPPAGIPELREALAEKFRRENGLSVT-------PEETIVTVGGSQALFNLFQAIL----D---------------PGDE 117 (385)
T ss_dssp CCCTTCCHHHHHHHHHHHHHTTCCCCC-------GGGEEEESHHHHHHHHHHHHHC----C---------------TTCE
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCC-------hHHEEEcCChHHHHHHHHHHhc----C---------------CCCE
Confidence 433344678888899999888886421 1368999999999888776431 1 1224
Q ss_pred EEecCCcchhHHHHHHhCCCceEEEecCC--CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccHHHHHH
Q psy13453 634 AYTSDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLEELGP 708 (764)
Q Consensus 634 i~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~--~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~eIa~ 708 (764)
|+++.-+|.++..+++..|.+++.||+++ ++.+|+++|+++|++. +-+|+.+..++.+|.+ +++++|++
T Consensus 118 Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~p~NPtG~~~~~~~l~~i~~ 191 (385)
T 1b5p_A 118 VIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPR------TKALVVNSPNNPTGAVYPKEVLEALAR 191 (385)
T ss_dssp EEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred EEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCCC------CEEEEEeCCCCCCCCCcCHHHHHHHHH
Confidence 77788889999999999999999999974 5689999999888543 3467777889999998 56999999
Q ss_pred HHHhcCCEEEEecccccccccc--chhhhhhcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 709 ICQEYNIWLHVDAAYAGSALLL--PEYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 709 i~~~~glwLHVDaA~Gg~~l~~--~~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
+|++||+|+++|.+|+.+..-. ..... +.+ ..+-+..+++|+++.| +-+|.+
T Consensus 192 ~~~~~~~~li~De~~~~~~~~~~~~~~~~-~~~--~~~i~~~s~SK~~~~~G~RiG~~ 246 (385)
T 1b5p_A 192 LAVEHDFYLVSDEIYEHLLYEGEHFSPGR-VAP--EHTLTVNGAAKAFAMTGWRIGYA 246 (385)
T ss_dssp HHHHTTCEEEEECTTTTCBSSSCCCCGGG-TCT--TTEEEEEESTTTTTCGGGCCEEE
T ss_pred HHHHcCCEEEEEccchhcccCCCCCCHHH-cCC--CCEEEEEechhhcCCcccceEEE
Confidence 9999999999999998753311 11111 111 2356778999998754 226654
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.4e-10 Score=126.59 Aligned_cols=199 Identities=13% Similarity=-0.023 Sum_probs=133.0
Q ss_pred HHHHHHHHHH-hhcc-cCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCC--cEEEeCChHHHHHHHHHHHHHH
Q psy13453 536 PSIVGDMLSG-AFGL-IGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPG--GGIIQSTASEATLVSILVAKRK 611 (764)
Q Consensus 536 ~~~lad~l~~-~lN~-n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~--~GvfTsGgTeANl~Al~aAR~~ 611 (764)
+.+. +.+.. .+.. ....|...+...++.+.+.+|+....+.+-+ .. ..++|+|||+++..++......
T Consensus 47 ~~v~-~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~-------~~~~~i~~t~g~~~a~~~~~~~~~~~ 118 (397)
T 3fsl_A 47 QAVA-EAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLK-------QQRVATIQTLGGSGALKVGADFLKRY 118 (397)
T ss_dssp HHHH-HHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH-------TTCEEEEEESHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCccccc-------ccceEEEEcCCcHHHHHHHHHHHHhc
Confidence 4444 34444 4443 2334444455567777777777554332100 12 5789999999998876433211
Q ss_pred HhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEec--CCCCcccHHHHHHHHHHhhhcCCCceEEE
Q psy13453 612 MINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRS--DDNGVLRGDALLTAVKEDLAKGLIPCCLI 689 (764)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~--d~~g~md~~~Le~~I~~~~~~G~~p~~Vv 689 (764)
. ++..|++..-+|.+...++...|.+++.+|. ++++.+|+++|++++++. +..+.+|+
T Consensus 119 --~---------------~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~ 178 (397)
T 3fsl_A 119 --F---------------PESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTL---QAGSIVLL 178 (397)
T ss_dssp --C---------------TTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTC---CTTCEEEE
T ss_pred --C---------------CCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhC---CCCCEEEE
Confidence 1 1124778889999999999999999999998 467899999999999742 12356777
Q ss_pred EeeccCCcccc---ccHHHHHHHHHhcCCEEEEecccccccccc----chhhhhhcCCCcccEEEEcCCccCCCC-cCce
Q psy13453 690 ATLGTTGTCAF---DNLEELGPICQEYNIWLHVDAAYAGSALLL----PEYAHLKRGLEYVDSFDFNTHKWLLVN-FDCS 761 (764)
Q Consensus 690 ataGTT~~Gai---Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~----~~~r~~l~gie~aDSit~d~HK~l~~P-~~~g 761 (764)
.+..++.+|.+ +++++|+++|++||+|+++|.+|+.+..-. ....... +...-.-+..+++|.++.| ..+|
T Consensus 179 ~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~~~~G~riG 257 (397)
T 3fsl_A 179 HPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIA-SAGLPALVSNSFSKIFSLYGERVG 257 (397)
T ss_dssp CSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHH-HTTCCEEEEEECTTTTTCGGGCCE
T ss_pred eCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHH-hcCCCEEEEecccccccCcCCCee
Confidence 78889999998 778899999999999999999998755321 1111111 1222246677899988743 2345
Q ss_pred ee
Q psy13453 762 AM 763 (764)
Q Consensus 762 ~l 763 (764)
.+
T Consensus 258 ~~ 259 (397)
T 3fsl_A 258 GL 259 (397)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.27 E-value=4.6e-11 Score=132.51 Aligned_cols=173 Identities=16% Similarity=0.066 Sum_probs=120.8
Q ss_pred HHHHHHHhhcccCccccC-CchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhc
Q psy13453 539 VGDMLSGAFGLIGFSWLS-SPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQ 617 (764)
Q Consensus 539 lad~l~~~lN~n~~~~~~-sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~ 617 (764)
+.+.+...+... .|.. ++...++++ .+++++|.+ ..+||+|||+++..++.+.+ +
T Consensus 34 ~~~a~~~~~~~~--~y~~~~~~~~~l~~----~la~~~~~~-----------~v~~~~ggt~al~~~l~~l~----~--- 89 (424)
T 2po3_A 34 LYERLDRALDSQ--WLSNGGPLVREFEE----RVAGLAGVR-----------HAVATCNATAGLQLLAHAAG----L--- 89 (424)
T ss_dssp HHHHHHHHHHHT--CCSSSCHHHHHHHH----HHHHHHTSS-----------EEEEESCHHHHHHHHHHHHT----C---
T ss_pred HHHHHHHHHhcC--CcccCCHHHHHHHH----HHHHHhCCC-----------eEEEeCCHHHHHHHHHHHcC----C---
Confidence 334444444332 2333 444455554 556666653 47999999999998887652 1
Q ss_pred cCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCC-CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCC
Q psy13453 618 SKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTG 696 (764)
Q Consensus 618 ~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~-~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~ 696 (764)
+..|++++.+|.+...++...|+.++.+|+++ ++.+|+++|+++|++. +-+|+.+ +.
T Consensus 90 -------------gd~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~------~~~v~~~---~~ 147 (424)
T 2po3_A 90 -------------TGEVIMPSMTFAATPHALRWIGLTPVFADIDPDTGNLDPDQVAAAVTPR------TSAVVGV---HL 147 (424)
T ss_dssp -------------CSEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTSSBCHHHHGGGCCTT------EEEEEEE---CG
T ss_pred -------------CCEEEECCCccHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhhCcC------CcEEEEE---CC
Confidence 11478899999999999999999999999985 7889999999888542 3355543 36
Q ss_pred ccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCC--ccCCCCcCceee
Q psy13453 697 TCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTH--KWLLVNFDCSAM 763 (764)
Q Consensus 697 ~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~H--K~l~~P~~~g~l 763 (764)
+|..+++++|+++|++||+|+++|+||+.+..+.. +. +. ..+|-++.++| |+++. ..+|++
T Consensus 148 tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~~~~--~~-~~--~~~di~~~S~sk~K~l~~-~~~G~~ 210 (424)
T 2po3_A 148 WGRPCAADQLRKVADEHGLRLYFDAAHALGCAVDG--RP-AG--SLGDAEVFSFHATKAVNA-FEGGAV 210 (424)
T ss_dssp GGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETT--EE-TT--SSSSEEEEECCTTSSSCC-SSCEEE
T ss_pred CCCcCCHHHHHHHHHHcCCEEEEECccccCCeECC--ee-cc--cccCEEEEeCCCCCCccC-CCCeEE
Confidence 89999999999999999999999999994333321 11 11 12466666766 98875 555654
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.27 E-value=4e-11 Score=130.29 Aligned_cols=193 Identities=13% Similarity=0.084 Sum_probs=133.4
Q ss_pred HHHHHHHhhccc-CccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhc
Q psy13453 539 VGDMLSGAFGLI-GFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQ 617 (764)
Q Consensus 539 lad~l~~~lN~n-~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~ 617 (764)
+.+.+...+... ...|...+...++++.+.+|+.+.+|.+.+ .....+||+|+|+++..++.+...
T Consensus 43 v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~------~~~~v~~~~g~~~a~~~~~~~l~~------- 109 (376)
T 2dou_A 43 PLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLD------PRREALALIGSQEGLAHLLLALTE------- 109 (376)
T ss_dssp HHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCC------TTTSEEEESSHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCC------CCccEEEcCCcHHHHHHHHHHhcC-------
Confidence 344444444321 223333335678888888888888898621 012579999999999887765421
Q ss_pred cCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCc
Q psy13453 618 SKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGT 697 (764)
Q Consensus 618 ~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~ 697 (764)
++..|++..-+|.+...++...|.+++.+|.++.+.+|+++|+++|++. +-+|+.+..++.+
T Consensus 110 ------------~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v~l~~p~npt 171 (376)
T 2dou_A 110 ------------PEDLLLLPEVAYPSYFGAARVASLRTFLIPLREDGLADLKAVPEGVWRE------AKVLLLNYPNNPT 171 (376)
T ss_dssp ------------TTCEEEEESSCCHHHHHHHHHTTCEEEEECBCTTSSBCGGGSCHHHHHH------EEEEEECSSCTTT
T ss_pred ------------CCCEEEECCCCcHhHHHHHHHcCCEEEEeeCCCCCCCCHHHHHHhhccC------ceEEEECCCCCCc
Confidence 1124777888999999999999999999998555579999999999643 3477777788889
Q ss_pred ccccc---HHHHHHHHHhcCCEEEEeccccccccccchhhhhhc--CCCcccEEEEcCCccCCCC-cCceee
Q psy13453 698 CAFDN---LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKR--GLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 698 GaiDp---l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~--gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
|.+-| +++|+++|++||+|+++|.+|+.+..-. +....+. +....+-+..++||+++.| +.+|++
T Consensus 172 G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~ 242 (376)
T 2dou_A 172 GAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEG-EAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFA 242 (376)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSS-CCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEE
T ss_pred CccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCChhhcCCCCCcEEEEecchhhcCChhheeEEE
Confidence 98854 7889999999999999999998754321 1111111 1112366778999998744 345654
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.5e-11 Score=132.76 Aligned_cols=164 Identities=16% Similarity=0.031 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
....++.+++++++|.+. ...+||+|||+++..++.+++... + ++-+|+.+...|
T Consensus 87 ~~~~~l~~~la~~~~~~~---------~~v~~~~gg~~a~~~al~~~~~~~-~---------------~~~vi~~~~~y~ 141 (395)
T 1vef_A 87 PMRGEFYRTLTAILPPEL---------NRVFPVNSGTEANEAALKFARAHT-G---------------RKKFVAAMRGFS 141 (395)
T ss_dssp HHHHHHHHHHHHTSCTTE---------EEEEEESSHHHHHHHHHHHHHHHH-S---------------CCEEEEETTCCC
T ss_pred HHHHHHHHHHHHhcCCCc---------CEEEEcCcHHHHHHHHHHHHHHHh-C---------------CCeEEEEcCCcC
Confidence 456677788888887654 257999999999999998765321 1 123566666667
Q ss_pred hhHHHHHHhCCCc------------eEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc----HHH
Q psy13453 642 SSVEKSAIIGDVP------------VRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN----LEE 705 (764)
Q Consensus 642 ~Sv~kAa~~lGl~------------v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp----l~e 705 (764)
.+...++...|.. +..+|. .|+++|+++|++. +.+|+++..++.+|.+.| +++
T Consensus 142 ~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-----~d~~~l~~~i~~~------~~~v~~~~~~~~tG~~~~~~~~l~~ 210 (395)
T 1vef_A 142 GRTMGSLSVTWEPKYREPFLPLVEPVEFIPY-----NDVEALKRAVDEE------TAAVILEPVQGEGGVRPATPEFLRA 210 (395)
T ss_dssp CSSHHHHHTCCCHHHHGGGCSCSSCEEEECT-----TCHHHHHHHCCTT------EEEEEECSEETTTTSEECCHHHHHH
T ss_pred CCchhhhhhcCCcccccccCCCCCCeeEeCC-----CcHHHHHHHhccC------EEEEEEeCccCCCCccCCCHHHHHH
Confidence 7777777777764 333332 4899999988632 457777766677998877 999
Q ss_pred HHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 706 LGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 706 Ia~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
|+++|++||+|||+|++|++.......+.....++ .+|.++ +||+++.++.+|+++
T Consensus 211 i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~-~~d~~s--~sK~~~~g~~~G~~~ 266 (395)
T 1vef_A 211 AREITQEKGALLILDEIQTGMGRTGKRFAFEHFGI-VPDILT--LAKALGGGVPLGVAV 266 (395)
T ss_dssp HHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTC-CCSEEE--ECGGGGTTSSCEEEE
T ss_pred HHHHHHHcCCEEEEEecccCCccCCchhHhhhcCC-CCCEEE--EcccccCCCceEEEE
Confidence 99999999999999999996321111111122233 368764 599999888888763
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.4e-11 Score=134.27 Aligned_cols=152 Identities=11% Similarity=-0.001 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchh
Q psy13453 564 EVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSS 643 (764)
Q Consensus 564 E~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~S 643 (764)
-.++.+++++++|.+ ..++++||++|+..++.+.. . +...|+++..+|.+
T Consensus 83 ~~~l~~~la~~~g~~-----------~~~~~~sG~~Ai~~al~~l~----~---------------~Gd~Vi~~~~~y~~ 132 (414)
T 3ndn_A 83 VSVFEERLRLIEGAP-----------AAFATASGMAAVFTSLGALL----G---------------AGDRLVAARSLFGS 132 (414)
T ss_dssp HHHHHHHHHHHHTCS-----------EEEEESSHHHHHHHHHHTTC----C---------------TTCEEEEESCCCHH
T ss_pred HHHHHHHHHHHHCCC-----------cEEEECCHHHHHHHHHHHHh----C---------------CCCEEEEcCCccch
Confidence 344556778888763 36899999999887776431 0 12257788888988
Q ss_pred HHHHHHh----CCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEE
Q psy13453 644 VEKSAII----GDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHV 719 (764)
Q Consensus 644 v~kAa~~----lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHV 719 (764)
...++.. .|+.++.||.+ |+++|+++|++. +-+|++...++.+|.+.|+++|+++|++||+++++
T Consensus 133 ~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~ai~~~------t~~v~le~p~NptG~~~~l~~i~~la~~~g~~liv 201 (414)
T 3ndn_A 133 CFVVCSEILPRWGVQTVFVDGD-----DLSQWERALSVP------TQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVL 201 (414)
T ss_dssp HHHHHHTHHHHTTCEEEEECTT-----CHHHHHHHTSSC------CSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHcCcEEEEeCCC-----CHHHHHHhcCCC------CeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEE
Confidence 7776644 89999999876 799999988653 34788889999999999999999999999999999
Q ss_pred eccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcC--ceee
Q psy13453 720 DAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD--CSAM 763 (764)
Q Consensus 720 DaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~--~g~l 763 (764)
|.+|+.+....+. -.| +|.++.++||+++.+-. +|++
T Consensus 202 De~~~~~~~~~~~----~~g---~div~~S~sK~l~~~G~~~~G~v 240 (414)
T 3ndn_A 202 DNVFATPLLQQGF----PLG---VDVVVYSGTKHIDGQGRVLGGAI 240 (414)
T ss_dssp ECTTTHHHHCCCG----GGT---CSEEEEETTTTTTCSSCCCCEEE
T ss_pred ECCCcccccCCch----hcC---CCeEeccCCccccCCCCceEEEE
Confidence 9999865433321 123 59999999999976542 5654
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.27 E-value=5e-11 Score=131.29 Aligned_cols=152 Identities=15% Similarity=0.080 Sum_probs=115.8
Q ss_pred HHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhH
Q psy13453 565 VLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV 644 (764)
Q Consensus 565 ~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv 644 (764)
.++.+++++++|.+. .+++++||++|..++.+... ++..|+++..+|.+.
T Consensus 107 ~~l~~~la~~~g~~~-----------~i~~~sGt~a~~~~l~~~~~-------------------~gd~Vl~~~~~~~~~ 156 (409)
T 3kki_A 107 PMIEKRLAKFTGFDE-----------CLLSQSGWNANVGLLQTICQ-------------------PNTNVYIDFFAHMSL 156 (409)
T ss_dssp CHHHHHHHHHHTCSE-----------EEEESCHHHHHHHHHHHHCC-------------------TTCEEEEETTSCHHH
T ss_pred HHHHHHHHHHhCCCe-----------EEEecchHHHHHHHHHHhcC-------------------CCCEEEECCCcCHHH
Confidence 445667888888754 47778889999888774321 123578899999999
Q ss_pred HHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEecccc
Q psy13453 645 EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYA 724 (764)
Q Consensus 645 ~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~G 724 (764)
..++...|..++.++. +|+++|+++|++.. +.+|+.+..++.+|.+.|+++|+++|++||+||++|.+|+
T Consensus 157 ~~~~~~~g~~~~~~~~-----~d~~~le~~l~~~~-----~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~ 226 (409)
T 3kki_A 157 WEGARYANAQAHPFMH-----NNCDHLRMLIQRHG-----PGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHS 226 (409)
T ss_dssp HHHHHHTTCEEEEECT-----TCHHHHHHHHHHHC-----SCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTT
T ss_pred HHHHHHcCCeEEEecC-----CCHHHHHHHHHhcC-----CeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCcc
Confidence 9999999998877764 68999999998642 3478888888899999999999999999999999999998
Q ss_pred cccccc--chhhhhhcCC-CcccEEEEcCCccCCCC
Q psy13453 725 GSALLL--PEYAHLKRGL-EYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 725 g~~l~~--~~~r~~l~gi-e~aDSit~d~HK~l~~P 757 (764)
++.+-- ...... .++ ..+|.++.++||+++.+
T Consensus 227 ~g~~g~~g~~~~~~-~~~~~~~di~~~s~sK~~~~~ 261 (409)
T 3kki_A 227 LGTHGPNGAGLLAE-LGLTREVHFMTASLAKTFAYR 261 (409)
T ss_dssp TTTSSGGGCCHHHH-HTCGGGCSEEEEESSSTTCSS
T ss_pred ccccCCCCCcchhh-cCCCCCCCEEEeecchhhCCC
Confidence 754311 001111 122 35699999999999876
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=9.8e-11 Score=131.52 Aligned_cols=197 Identities=17% Similarity=0.114 Sum_probs=135.2
Q ss_pred HHHHHHHHHhhccc---CccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHh
Q psy13453 537 SIVGDMLSGAFGLI---GFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMI 613 (764)
Q Consensus 537 ~~lad~l~~~lN~n---~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~ 613 (764)
..+.+.+...+... ...|.......++++.+.+++.+..|.+ + ....++|+|+|+++..++.+..+
T Consensus 94 ~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~-~-------~~~v~~t~G~~~al~~~~~~l~~--- 162 (448)
T 3aow_A 94 EIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGIS-Q-------DNDIMITSGSQQALDLIGRVFLN--- 162 (448)
T ss_dssp HHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCC-T-------TSEEEEESSHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcC-C-------hhhEEEeCcHHHHHHHHHHHHcC---
Confidence 33444444444321 2344444566788888888888888884 2 13689999999998887765421
Q ss_pred hhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEE-EEee
Q psy13453 614 NHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCL-IATL 692 (764)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~V-vata 692 (764)
++..|++.+-+|.+...++...|.+++.||.|++| +|+++|+++|+.+..++..+-+| +...
T Consensus 163 ----------------~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~g-~d~~~L~~~l~~~~~~~~~~k~v~~~~~ 225 (448)
T 3aow_A 163 ----------------PGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDDEG-MKVEILEEKLKELKSQGKKVKVVYTVPT 225 (448)
T ss_dssp ----------------TTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred ----------------CCCEEEEeCCChHHHHHHHHHcCCEEEEeccCCCC-CCHHHHHHHHhhhhccCCCCeEEEECCC
Confidence 11257788889999999999999999999998776 99999999997432222245555 4567
Q ss_pred ccCCcccccc---HHHHHHHHHhcCCEEEEeccccccccccc---hhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 693 GTTGTCAFDN---LEELGPICQEYNIWLHVDAAYAGSALLLP---EYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 693 GTT~~GaiDp---l~eIa~i~~~~glwLHVDaA~Gg~~l~~~---~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
+++.+|.+-+ +++|+++|++||+|+++|.+|+.+..-.. .... ++ -...+-...+++|+++.-+-+|++
T Consensus 226 ~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~-~~-~~~~vi~~~S~SK~~~~GlriG~v 300 (448)
T 3aow_A 226 FQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKA-LD-NEGRVIYLGTFSKILAPGFRIGWM 300 (448)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGG-GC-TTSCEEEEEESTTTTCGGGCCEEE
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHh-cC-CCCCEEEEccchhhccccccEEEE
Confidence 7888998854 67899999999999999999988543111 1111 11 112356778899999822235665
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.26 E-value=3e-11 Score=135.50 Aligned_cols=150 Identities=20% Similarity=0.141 Sum_probs=116.6
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
..|...++| +++++++|.+. .+++++|++|+..++.+.. . ++..|+
T Consensus 80 ~~p~~~~le----~~lA~l~g~~~-----------~v~~~sG~~Ai~~al~al~----~---------------~Gd~Vi 125 (430)
T 3ri6_A 80 SNPTVEDLE----QRLKNLTGALG-----------VLALGSGMAAISTAILTLA----R---------------AGDSVV 125 (430)
T ss_dssp CCHHHHHHH----HHHHHHHTCSE-----------EEEESCHHHHHHHHHHHHC----C---------------TTCEEE
T ss_pred CCHHHHHHH----HHHHHHHCCCc-----------EEEECCHHHHHHHHHHHHh----C---------------CCCEEE
Confidence 345555555 46777877643 5788899999888776541 1 122578
Q ss_pred ecCCcchhHHH----HHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHH
Q psy13453 636 TSDQSNSSVEK----SAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQ 711 (764)
Q Consensus 636 ~S~~aH~Sv~k----Aa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~ 711 (764)
+++.+|.+... .+...|+.++.|+.+ |+++|+++|++. +-+|+....++.+|.+.|+++|+++|+
T Consensus 126 ~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~-----d~~~l~~ai~~~------t~~v~~e~p~NptG~~~dl~~i~~la~ 194 (430)
T 3ri6_A 126 TTDRLFGHTLSLFQKTLPSFGIEVRFVDVM-----DSLAVEHACDET------TKLLFLETISNPQLQVADLEALSKVVH 194 (430)
T ss_dssp EETTCCHHHHHHHHTHHHHTTCEEEEECTT-----CHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred EcCCCchhHHHHHHHHHHHcCCEEEEeCCC-----CHHHHHHhhCCC------CeEEEEECCCCCCCeecCHHHHHHHHH
Confidence 88999988777 566789999999876 899999998653 448888889999999999999999999
Q ss_pred hcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 712 EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 712 ~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
++|++++||.+|+.+.+..+. -.| +|.++.++||+++.|
T Consensus 195 ~~g~~livD~a~~~~~~~~~~----~~g---~div~~S~sK~l~g~ 233 (430)
T 3ri6_A 195 AKGIPLVVDTTMTPPYLLEAK----RLG---VDIEVLSSTKFISGG 233 (430)
T ss_dssp TTTCCEEEECTTSCTTTCCGG----GGT---CSEEEEECCCEEETT
T ss_pred HcCCEEEEECCCcccccCChH----HcC---CEEEEECCcccccCC
Confidence 999999999999876553332 123 599999999999876
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-11 Score=135.91 Aligned_cols=159 Identities=12% Similarity=-0.003 Sum_probs=113.6
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEE-eCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGII-QSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVA 634 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~Gvf-TsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi 634 (764)
.+|....+.+++.+++++++|.++. ...+| |+|||+++..++.+.. . ++ ++
T Consensus 72 ~~~~~~~~~~~~~~~la~~~g~~~~--------~~i~~~t~g~t~al~~~~~~l~----~---------------~g-v~ 123 (398)
T 2fyf_A 72 RQAPVKNLVGRVRSGLAELFSLPDG--------YEVILGNGGATAFWDAAAFGLI----D---------------KR-SL 123 (398)
T ss_dssp TSHHHHHHHHHHHHHHHHHTTCCTT--------CEEEEEETCHHHHHHHHHHHTC----S---------------SC-EE
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCC--------ceEEEeCCchhHHHHHHHHHhc----C---------------CC-eE
Confidence 4677777888999999999999741 25778 9999999988876541 0 12 23
Q ss_pred EecCCcchh-HHHHHHhC--CCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHH
Q psy13453 635 YTSDQSNSS-VEKSAIIG--DVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQ 711 (764)
Q Consensus 635 ~~S~~aH~S-v~kAa~~l--Gl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~ 711 (764)
+++...|.. ..+.+... |..++.||++ +|.++..+ + ...+-+|+++..+|.+|.+.|+++|.++
T Consensus 124 ~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~g~~~~~~----i------~~~~~~v~~~~~~nptG~~~~~~~i~~~-- 190 (398)
T 2fyf_A 124 HLTYGEFSAKFASAVSKNPFVGEPIIITSD-PGSAPEPQ----T------DPSVDVIAWAHNETSTGVAVAVRRPEGS-- 190 (398)
T ss_dssp EEECSHHHHHHHHHHHHCTTSCCCEEEECC-TTCCCCCC----C------CTTCSEEEEESEETTTTEECCCCCCTTC--
T ss_pred EEeCCHHHHHHHHHHHHhCCCCceEEEecC-CCCCCCcc----c------cCCCCEEEEeCcCCCcceecchHHhhhh--
Confidence 346666643 23345555 7888999988 45443221 2 1235688888899999999999999887
Q ss_pred hcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 712 EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 712 ~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
+|+|+|+|+||+.+....+ ++.+|.++.++||+++.|.++|+++
T Consensus 191 -~~~~vivD~a~~~~~~~~~--------~~~~di~~~s~sK~~~~~gg~g~l~ 234 (398)
T 2fyf_A 191 -DDALVVIDATSGAGGLPVD--------IAETDAYYFAPQKNFASDGGLWLAI 234 (398)
T ss_dssp -C-CEEEEECTTTTTTSCCC--------GGGCSEEEECTTSTTCSCSSEEEEE
T ss_pred -cCCeEEEEeccccCCcccC--------cccCcEEEEecCcccCCCCceEEEE
Confidence 8999999999987653321 2236999999999999886787653
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.6e-11 Score=129.35 Aligned_cols=166 Identities=9% Similarity=-0.034 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
.++++.+.+++.+.+|.+.+ ....+||+|||+++..++.+... ++..|++...+
T Consensus 61 ~~lr~~la~~~~~~~~~~~~-------~~~i~~t~g~~~a~~~~~~~~~~-------------------~gd~vl~~~~~ 114 (377)
T 3fdb_A 61 SLLSQATAEFYADRYGYQAR-------PEWIFPIPDVVRGLYIAIDHFTP-------------------AQSKVIVPTPA 114 (377)
T ss_dssp CCHHHHHHHHHHHHHCCCCC-------GGGEEEESCHHHHHHHHHHHHSC-------------------TTCCEEEEESC
T ss_pred HHHHHHHHHHHHHHhCCCCC-------HHHEEEeCChHHHHHHHHHHhcC-------------------CCCEEEEcCCC
Confidence 67888888999988886532 24689999999999887765421 11246778889
Q ss_pred chhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc---cHHHHHHHHHhcCCEE
Q psy13453 641 NSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD---NLEELGPICQEYNIWL 717 (764)
Q Consensus 641 H~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD---pl~eIa~i~~~~glwL 717 (764)
|.++..++...|.+++.+|.+++ +|+++|+++|++. +.+|+.+..++.+|.+- ++++|+++|++||+++
T Consensus 115 ~~~~~~~~~~~g~~~~~~~~~~~--~d~~~l~~~l~~~------~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~l 186 (377)
T 3fdb_A 115 YPPFFHLLSATQREGIFIDATGG--INLHDVEKGFQAG------ARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARV 186 (377)
T ss_dssp CTHHHHHHHHHTCCEEEEECTTS--CCHHHHHHHHHTT------CCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEE
T ss_pred cHhHHHHHHHcCCEEEEccCCCC--CCHHHHHHHhccC------CCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 99999999999999999999876 9999999999764 33777788899999985 5777888899999999
Q ss_pred EEecccccccccc-chhhhhhcCC--CcccEEEEcCCccCCCC-cCce
Q psy13453 718 HVDAAYAGSALLL-PEYAHLKRGL--EYVDSFDFNTHKWLLVN-FDCS 761 (764)
Q Consensus 718 HVDaA~Gg~~l~~-~~~r~~l~gi--e~aDSit~d~HK~l~~P-~~~g 761 (764)
++|.+|+.+..-. .... .+..+ ...+-+..++||+++.| ..+|
T Consensus 187 i~De~~~~~~~~g~~~~~-~~~~~~~~~~~i~~~s~sK~~g~~G~r~G 233 (377)
T 3fdb_A 187 LVDEIHAPLVFDGQHTVA-AGVSDTAASVCITITAPSKAWNIAGLKCA 233 (377)
T ss_dssp EEECTTGGGBSSSCCCCG-GGSCHHHHHHEEEEECSTTTTTCGGGCCE
T ss_pred EEEcccchhhcCCCCCcc-cHHHccCCCcEEEEEeChHhccCcchhhe
Confidence 9999998844322 1111 11111 11246678999999643 4455
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-10 Score=125.30 Aligned_cols=194 Identities=9% Similarity=-0.071 Sum_probs=134.2
Q ss_pred HHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhc
Q psy13453 538 IVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQ 617 (764)
Q Consensus 538 ~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~ 617 (764)
.+.+.+...+ .....|.......++.+.+.+|+.+.+|.+-+ ....+||+|||+++..++.+... + .
T Consensus 40 ~v~~a~~~~~-~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~-------~~~i~~t~g~~~al~~~~~~~~~---~-~- 106 (376)
T 3ezs_A 40 FIQDALKNHT-HSLNIYPKSAFEESLRAAQRGFFKRRFKIELK-------ENELISTLGSREVLFNFPSFVLF---D-Y- 106 (376)
T ss_dssp HHHHHHHTTG-GGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCC-------GGGEEEESSSHHHHHHHHHHHTT---T-C-
T ss_pred HHHHHHHHhh-hhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCC-------HHHEEECcCcHHHHHHHHHHHcC---C-C-
Confidence 3444454444 22333444444678999999999999997321 13689999999999888775421 0 0
Q ss_pred cCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCc
Q psy13453 618 SKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGT 697 (764)
Q Consensus 618 ~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~ 697 (764)
++..|++..-+|.++..++...|.+++.+|.++++.+++ +|++++.+. +-+|+.+..++.+
T Consensus 107 ------------~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~l~~~~~~~------~~~v~~~~p~npt 167 (376)
T 3ezs_A 107 ------------QNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKENDFTP-SLNEKELQE------VDLVILNSPNNPT 167 (376)
T ss_dssp ------------SSCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTSCC-CCCHHHHHH------CSEEEECSSCTTT
T ss_pred ------------CCCEEEEecCCcHhHHHHHHHcCCEEEEcccCCCCCcch-hHHhhhccC------CCEEEEcCCCCCc
Confidence 012577888999999999999999999999987666666 788888764 3377777889999
Q ss_pred ccccc---HHHHHHHHHhcCCEEEEeccccccccccch--hhhhhc--C--CCcccEEEEcCCccCC-CCcCceee
Q psy13453 698 CAFDN---LEELGPICQEYNIWLHVDAAYAGSALLLPE--YAHLKR--G--LEYVDSFDFNTHKWLL-VNFDCSAM 763 (764)
Q Consensus 698 GaiDp---l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~--~r~~l~--g--ie~aDSit~d~HK~l~-~P~~~g~l 763 (764)
|.+-+ +++|+++|++||+|+++|.+|+.+..-... ...... + -...+-+..++||+++ ....+|.+
T Consensus 168 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~ 243 (376)
T 3ezs_A 168 GRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFI 243 (376)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEE
T ss_pred CCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCccceeEEE
Confidence 99855 777888899999999999999985432110 111100 0 1234678889999996 34455654
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.26 E-value=7.1e-11 Score=127.61 Aligned_cols=161 Identities=14% Similarity=-0.026 Sum_probs=120.3
Q ss_pred HHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHH
Q psy13453 566 LVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVE 645 (764)
Q Consensus 566 ~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~ 645 (764)
++.+++++++|.+.+ ..+||+|||+++..++.+.. . +...|+++..+|.++.
T Consensus 69 ~lr~~la~~~~~~~~---------~v~~~~g~~~a~~~~~~~l~----~---------------~gd~vl~~~~~~~~~~ 120 (365)
T 3get_A 69 ELKSTLAQKYKVQNE---------NIIIGAGSDQVIEFAIHSKL----N---------------SKNAFLQAGVTFAMYE 120 (365)
T ss_dssp HHHHHHHHHHTCCGG---------GEEEESSHHHHHHHHHHHHC----C---------------TTCEEEECSSCCTHHH
T ss_pred HHHHHHHHHhCCCcc---------eEEECCCHHHHHHHHHHHHh----C---------------CCCEEEEeCCChHHHH
Confidence 456677888887653 68999999999888776431 1 1225778889999999
Q ss_pred HHHHhCCCceEEEec-CCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHH--hcCCEEEEecc
Q psy13453 646 KSAIIGDVPVRQLRS-DDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQ--EYNIWLHVDAA 722 (764)
Q Consensus 646 kAa~~lGl~v~~Vp~-d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~--~~glwLHVDaA 722 (764)
.++...|.+++.+|+ ++++ +|+++|+++++++ +-+|+.+..++.+|.+-|++++.++|+ ++|+|+++|.+
T Consensus 121 ~~~~~~g~~~~~v~~~~~~~-~d~~~l~~~l~~~------~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~ 193 (365)
T 3get_A 121 IYAKQCGAKCYKTQSITHNL-DEFKKLYETHKDE------IKLIFLCLPNNPLGECLDASEATEFIKGVNEDCLVVIDAA 193 (365)
T ss_dssp HHHHHHTCEEEECSSSSCCH-HHHHHHHHHTTTT------EEEEEEESSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECT
T ss_pred HHHHHcCCEEEEEecCCCCC-CCHHHHHHHhCCC------CCEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCc
Confidence 999999999999998 6788 9999999998643 447777889999999999999888888 77999999999
Q ss_pred cccccc--c----cchhhhhhcCCCcccEEEEcCCccCC-CCcCceee
Q psy13453 723 YAGSAL--L----LPEYAHLKRGLEYVDSFDFNTHKWLL-VNFDCSAM 763 (764)
Q Consensus 723 ~Gg~~l--~----~~~~r~~l~gie~aDSit~d~HK~l~-~P~~~g~l 763 (764)
|+.+.. . .+.. .... ....+-+..++||+++ ....+|.+
T Consensus 194 ~~~~~~~~~~~~~~~~~-~~~~-~~~~~i~~~s~sK~~~~~G~r~G~~ 239 (365)
T 3get_A 194 YNEFASFKDSKKHLEPC-ELIK-EFDNVLYLGTFSKLYGLGGLRIGYG 239 (365)
T ss_dssp THHHHHHHCGGGCCCHH-HHHH-HCTTEEEEEESSSTTSCTTTCCEEE
T ss_pred cHHHhcccCCcccccHh-HHhc-cCCCEEEEeecchHhcCcchheEEE
Confidence 986542 1 1111 1111 1123577889999987 34456654
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.7e-11 Score=137.30 Aligned_cols=195 Identities=10% Similarity=0.026 Sum_probs=137.8
Q ss_pred HHHHHHHHHhhcc-cCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhh
Q psy13453 537 SIVGDMLSGAFGL-IGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINH 615 (764)
Q Consensus 537 ~~lad~l~~~lN~-n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~ 615 (764)
..+.+.+...+.. ....|.......++++.+.+|+.+.+|.+.+ ....++|+|||+++..++.+..+
T Consensus 73 ~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~-------~~~v~~t~G~~~al~~~~~~l~~----- 140 (447)
T 3b46_A 73 QFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELK-------AENVTVTTGANEGILSCLMGLLN----- 140 (447)
T ss_dssp HHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCC-------GGGEEEESHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCC-------hhhEEEeCCHHHHHHHHHHHHcC-----
Confidence 3444555555543 2233444445678899999999888886432 13689999999999888776421
Q ss_pred hccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCC------------CCcccHHHHHHHHHHhhhcCC
Q psy13453 616 WQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDD------------NGVLRGDALLTAVKEDLAKGL 683 (764)
Q Consensus 616 ~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~------------~g~md~~~Le~~I~~~~~~G~ 683 (764)
++..|++.+-+|.+...++...|.+++.||.+. ++.+|+++|+++|++.
T Consensus 141 --------------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~----- 201 (447)
T 3b46_A 141 --------------AGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSK----- 201 (447)
T ss_dssp --------------TTCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCTT-----
T ss_pred --------------CCCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhccC-----
Confidence 112477778889999999999999999999864 4689999999988532
Q ss_pred CceEEEEeeccCCcccc---ccHHHHHHHHHhcCCEEEEeccccccccccc--hhhhhhcCCCcccEEEEcCCccCCCC-
Q psy13453 684 IPCCLIATLGTTGTCAF---DNLEELGPICQEYNIWLHVDAAYAGSALLLP--EYAHLKRGLEYVDSFDFNTHKWLLVN- 757 (764)
Q Consensus 684 ~p~~VvataGTT~~Gai---Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~--~~r~~l~gie~aDSit~d~HK~l~~P- 757 (764)
+-+|+++..++.+|.+ +++++|+++|++||+|+++|.+|+....-.+ .....-.+....|-+..++||+++.|
T Consensus 202 -~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G 280 (447)
T 3b46_A 202 -TKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATG 280 (447)
T ss_dssp -EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTT
T ss_pred -CeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcc
Confidence 4477778889999998 6899999999999999999999987443111 11111011123488999999998743
Q ss_pred cCceee
Q psy13453 758 FDCSAM 763 (764)
Q Consensus 758 ~~~g~l 763 (764)
+-+|++
T Consensus 281 ~riG~~ 286 (447)
T 3b46_A 281 WRIGWV 286 (447)
T ss_dssp SCCEEE
T ss_pred hhhEEE
Confidence 336654
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.3e-11 Score=131.97 Aligned_cols=171 Identities=12% Similarity=0.022 Sum_probs=122.6
Q ss_pred ccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCc
Q psy13453 552 FSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631 (764)
Q Consensus 552 ~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~ 631 (764)
..|...+...++++.+.+|+. +.++ ...++|+|||+++..++.+.. . ++
T Consensus 57 ~~y~~~~g~~~l~~~la~~~~---~~~~---------~~v~~~~g~~~a~~~~~~~l~----~---------------~g 105 (375)
T 3op7_A 57 LNYGWIEGSPAFKKSVSQLYT---GVKP---------EQILQTNGATGANLLVLYSLI----E---------------PG 105 (375)
T ss_dssp CSSCCTTCCHHHHHHHHTTSS---SCCG---------GGEEEESHHHHHHHHHHHHHC----C---------------TT
T ss_pred cCCCCCCChHHHHHHHHHHhc---cCCh---------hhEEEcCChHHHHHHHHHHhc----C---------------CC
Confidence 344444445566665554432 3433 368999999999988876541 1 12
Q ss_pred eEEEecCCcchhHHHHHHhCCCceEEEecC--CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc---HHHH
Q psy13453 632 LVAYTSDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN---LEEL 706 (764)
Q Consensus 632 ~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d--~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp---l~eI 706 (764)
..|++...+|.+...++...|.+++.+|++ ..+.+|+++|++++++. +-+|+.+..++.+|.+-| +++|
T Consensus 106 d~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~~~~l~~i 179 (375)
T 3op7_A 106 DHVISLYPTYQQLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRPT------TKMICINNANNPTGAVMDRTYLEEL 179 (375)
T ss_dssp CEEEEEESSCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTT------CCEEEEESSCTTTCCCCCHHHHHHH
T ss_pred CEEEEeCCCchhHHHHHHHcCCEEEEEeccccCCCCCCHHHHHHhhccC------CeEEEEcCCCCCCCCCCCHHHHHHH
Confidence 257788899999999999999999999987 34569999999998643 447777888899999999 9999
Q ss_pred HHHHHhcCCEEEEeccccccccc-cchhhhhhcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 707 GPICQEYNIWLHVDAAYAGSALL-LPEYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 707 a~i~~~~glwLHVDaA~Gg~~l~-~~~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
+++|++||+|+++|.+|+.+..- .+.... .. ..+-+..+++|.++.| ..+|++
T Consensus 180 ~~la~~~~~~li~De~~~~~~~~~~~~~~~-~~---~~~i~~~s~sK~~~~~G~r~G~v 234 (375)
T 3op7_A 180 VEIASEVGAYILSDEVYRSFSELDVPSIIE-VY---DKGIAVNSLSKTYSLPGIRIGWV 234 (375)
T ss_dssp HHHHHTTTCEEEEECCSCCCSSSCCCCHHH-HC---TTEEEEEESSSSSSCGGGCCEEE
T ss_pred HHHHHHcCCEEEEEcccccccccCCCchhh-hc---CCEEEEeEChhhcCCcccceEEE
Confidence 99999999999999999875432 111111 11 2256788999999744 445554
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.25 E-value=5.1e-11 Score=128.21 Aligned_cols=159 Identities=13% Similarity=-0.008 Sum_probs=117.4
Q ss_pred HHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhH
Q psy13453 565 VLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV 644 (764)
Q Consensus 565 ~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv 644 (764)
.++.+++++++|.++ ...+||+|||+++..++.++ ..|+++..+|.++
T Consensus 64 ~~l~~~la~~~~~~~---------~~i~~~~g~t~al~~~~~~~-----------------------d~vi~~~~~~~~~ 111 (361)
T 3ftb_A 64 RRLNKSIENYLKLKD---------IGIVLGNGASEIIELSISLF-----------------------EKILIIVPSYAEY 111 (361)
T ss_dssp HHHHHHHHHHHTCCS---------CEEEEESSHHHHHHHHHTTC-----------------------SEEEEEESCCTHH
T ss_pred HHHHHHHHHHhCCCc---------ceEEEcCCHHHHHHHHHHHc-----------------------CcEEEecCChHHH
Confidence 445667777778754 35789999999998887643 1367788899999
Q ss_pred HHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc---cHHHHHHHHHhcCCEEEEec
Q psy13453 645 EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD---NLEELGPICQEYNIWLHVDA 721 (764)
Q Consensus 645 ~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD---pl~eIa~i~~~~glwLHVDa 721 (764)
..++...|.+++.+|.++++.+++++|++++++ +-+|+.+..++.+|.+- ++++|+++|++||+++++|.
T Consensus 112 ~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~-------~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De 184 (361)
T 3ftb_A 112 EINAKKHGVSVVFSYLDENMCIDYEDIISKIDD-------VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDE 184 (361)
T ss_dssp HHHHHHTTCEEEEEECCTTSCCCHHHHHHHTTT-------CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHcCCeEEEeecCcccCCCHHHHHHhccC-------CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEEC
Confidence 999999999999999998889999999988865 33777888899999885 47778888889999999999
Q ss_pred cccccccccchhh-hhhcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 722 AYAGSALLLPEYA-HLKRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 722 A~Gg~~l~~~~~r-~~l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
+|+.+..- .... ....+.....-+..++||.++.| ..+|.+
T Consensus 185 ~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~ 227 (361)
T 3ftb_A 185 AFIEFTGD-PSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYG 227 (361)
T ss_dssp SSGGGTCC-TTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEE
T ss_pred cchhhcCC-cccchhHhcccCCCEEEEeeChhhcCCCCcceeEE
Confidence 99875542 1100 01111112235567999998743 445553
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=3.3e-11 Score=135.10 Aligned_cols=148 Identities=9% Similarity=0.004 Sum_probs=110.4
Q ss_pred HHHHHHcCCCccccCCCCCCCcEEE---eCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecC-CcchhH
Q psy13453 569 NWLGKALGLPEEFLNCSPGPGGGII---QSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSD-QSNSSV 644 (764)
Q Consensus 569 ~~la~llG~p~~~~~~~~~~~~Gvf---TsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~-~aH~Sv 644 (764)
+.+++++|.+. .++ +++||+||..++.+.. . +...|++++ ..|...
T Consensus 80 ~~lA~l~g~e~-----------alv~p~~~sGt~Ai~~al~all----~---------------pGD~Vl~~~~~~y~~~ 129 (427)
T 3i16_A 80 AVYARVFNTES-----------ALVRPHFVNGTHALGAALFGNL----R---------------PGNTMLSVCGEPYDTL 129 (427)
T ss_dssp HHHHHHHTCSE-----------EEEETTCCSHHHHHHHHHHHHC----C---------------TTCEEEESSSSCCGGG
T ss_pred HHHHHHhCCcc-----------eEEeCCCccHHHHHHHHHHHHh----C---------------CCCEEEEeCCCccHHH
Confidence 46888998754 255 8999999987776431 1 122466666 566544
Q ss_pred H-----------HHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEee----ccCCccccccHHHHHHH
Q psy13453 645 E-----------KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATL----GTTGTCAFDNLEELGPI 709 (764)
Q Consensus 645 ~-----------kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~Vvata----GTT~~GaiDpl~eIa~i 709 (764)
. +.+...|++++.+|.+++|.+|+++|+++|++. ..+-+|+++. .++.+|.+.|+++|+++
T Consensus 130 ~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~----~~tklV~i~~s~~~p~nptg~i~dl~~i~~l 205 (427)
T 3i16_A 130 HDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKED----ESITLVHIQRSTGYGWRRALLIEDIKSIVDC 205 (427)
T ss_dssp HHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTC----TTEEEEEEECSCCSSSSCCCCHHHHHHHHHH
T ss_pred HHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCC----CCCEEEEEEcCCCCCCCCcccHHHHHHHHHH
Confidence 4 344556889999999989999999999999731 1244777766 78899999999999999
Q ss_pred HHh--cCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCC
Q psy13453 710 CQE--YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLV 756 (764)
Q Consensus 710 ~~~--~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~ 756 (764)
|++ +|+|+|||.||+.+........ . .+|.++.++||+++.
T Consensus 206 a~~~~~g~~livD~a~~~~~~~~~p~~---~---gaDiv~~S~sK~lgg 248 (427)
T 3i16_A 206 VKNIRKDIICFVDNCYGEFMDTKEPTD---V---GADLIAGSLIKNIGG 248 (427)
T ss_dssp HHHHCTTSEEEEECTTTTTSSSSCGGG---G---TCSEEEEETTSGGGT
T ss_pred HHHhCCCCEEEEECCCccccccCCccc---c---CCeEEEecCcccCCC
Confidence 999 9999999999987653221111 1 369999999999986
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=3.8e-11 Score=132.24 Aligned_cols=177 Identities=15% Similarity=0.088 Sum_probs=124.4
Q ss_pred ccCCchHHHHHHHHHHHHHHHc------CCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCcccc
Q psy13453 554 WLSSPACTELEVLVMNWLGKAL------GLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTEND 627 (764)
Q Consensus 554 ~~~sp~~t~lE~~v~~~la~ll------G~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~ 627 (764)
|.......++++.+.+|+.+.+ |++- .....++|+|||+++..++.+.. .
T Consensus 71 y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~-------~~~~v~~~~g~~~al~~~~~~l~----~------------- 126 (416)
T 1bw0_A 71 YFPTVGSPEAREAVATWWRNSFVHKEELKSTI-------VKDNVVLCSGGSHGILMAITAIC----D------------- 126 (416)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGC-------CGGGEEEESHHHHHHHHHHHHHC----C-------------
T ss_pred cCCCCCCHHHHHHHHHHHHhhhcccccCCCCC-------CcceEEEeCChHHHHHHHHHHhC----C-------------
Confidence 4333456778888888887533 3221 11368999999999888776541 1
Q ss_pred ccCceEEEecCCcchhHHHHHHhCCCceEEEecCC--CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc---
Q psy13453 628 IRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN--- 702 (764)
Q Consensus 628 ~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~--~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp--- 702 (764)
++..|+++.-+|.++..++...|.+++.+|.++ .+.+|+++|++++++. +.+|+.+..++.+|.+-|
T Consensus 127 --~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~v~i~~p~nptG~~~~~~~ 198 (416)
T 1bw0_A 127 --AGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDK------TKLLIVTNPSNPCGSNFSRKH 198 (416)
T ss_dssp --TTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHH
T ss_pred --CCCEEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCCCHHHHHHHhccC------CeEEEEeCCCCCCCcccCHHH
Confidence 112577788889999999999999999999864 3679999999988642 336666778889999988
Q ss_pred HHHHHHHHHhcCCEEEEeccccccccccch----hhhhhcCCCc-c-cEEEEcCCccCCCC-cCceee
Q psy13453 703 LEELGPICQEYNIWLHVDAAYAGSALLLPE----YAHLKRGLEY-V-DSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 703 l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~----~r~~l~gie~-a-DSit~d~HK~l~~P-~~~g~l 763 (764)
+++|+++|++||+|+++|.+|+.+.. ..+ ....+.++.. . +-+..++||+++.| +.+|++
T Consensus 199 l~~i~~~~~~~~~~li~De~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~Glr~G~~ 265 (416)
T 1bw0_A 199 VEDIVRLAEELRLPLFSDEIYAGMVF-KGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWL 265 (416)
T ss_dssp HHHHHHHHHHHTCCEEEECTTTTCBC-CSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEE
T ss_pred HHHHHHHHHHcCCEEEEEcccccccc-CCCCCCCCccCHHHccCCCcEEEEecchhhCCCCCceEEEE
Confidence 99999999999999999999998432 211 0111222221 1 34567999998766 345554
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.1e-11 Score=132.18 Aligned_cols=178 Identities=7% Similarity=-0.014 Sum_probs=129.3
Q ss_pred ccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceE
Q psy13453 554 WLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633 (764)
Q Consensus 554 ~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~v 633 (764)
|...+...++++.+.+|+.+.+|.+.+ .....+||+|+|+++..++.+... ++..
T Consensus 81 y~~~~g~~~lr~~ia~~~~~~~g~~~~------~~~~v~~t~G~~~al~~~~~~l~~-------------------~gd~ 135 (404)
T 2o1b_A 81 YGAFHGKEAFKQAIVDFYQRQYNVTLD------KEDEVCILYGTKNGLVAVPTCVIN-------------------PGDY 135 (404)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHCCCCC------TTTSEEEESSHHHHHHHHHHHHCC-------------------TTCE
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCC------CcccEEEcCCcHHHHHHHHHHhcC-------------------CCCE
Confidence 444446678999999999998897521 002579999999999888775421 1124
Q ss_pred EEecCCcchhHHHHHHhCCCceEEEecCC-CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc---cHHHHHHH
Q psy13453 634 AYTSDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD---NLEELGPI 709 (764)
Q Consensus 634 i~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~-~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD---pl~eIa~i 709 (764)
|++..-+|.+...++...|.+++.+|.++ .+.+|+++|++++++. +-+|+.+..++.+|.+- ++++|+++
T Consensus 136 Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~------~~~v~l~~p~nptG~~~~~~~l~~l~~~ 209 (404)
T 2o1b_A 136 VLLPDPGYTDYLAGVLLADGKPVPLNLEPPHYLPDWSKVDSQIIDK------TKLIYLTYPNNPTGSTATKEVFDEAIAK 209 (404)
T ss_dssp EEEEESCCSSHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHH------EEEEEECSSCTTTCCCCCHHHHHHHHHH
T ss_pred EEEcCCCchhHHHHHHHCCCEEEEeccCcccCcCCHHHHHHhhccC------ceEEEEcCCCCCCCccCCHHHHHHHHHH
Confidence 77788889999999999999999999986 3468999999999654 33677777888899885 58899999
Q ss_pred HHhcCCEEEEeccccccccccchhhhh--hcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 710 CQEYNIWLHVDAAYAGSALLLPEYAHL--KRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 710 ~~~~glwLHVDaA~Gg~~l~~~~~r~~--l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
|++||+|+++|.+|+.+..-. +.... +.+....|-+..++||+++.| +.+|++
T Consensus 210 ~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~ 265 (404)
T 2o1b_A 210 FKGTDTKIVHDFAYGAFGFDA-KNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFA 265 (404)
T ss_dssp HTTSSCEEEEECTTTTCBSSS-CCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEE
T ss_pred HHHcCCEEEEEccchhcccCC-CCCChhhcCCCCCCEEEEEecchhccCchhheEeE
Confidence 999999999999998754311 11111 111112467889999999754 346665
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.9e-11 Score=132.18 Aligned_cols=158 Identities=14% Similarity=-0.029 Sum_probs=111.7
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcE-EEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGG-IIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVA 634 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~G-vfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi 634 (764)
.+|....+.+++.+++++++|.+++ ... ++|+|||+++..++.+.. .. +..|
T Consensus 43 ~~~~~~~~~~~~~~~la~~~g~~~~--------~~~i~~t~g~t~a~~~~~~~l~----~~---------------gd~v 95 (362)
T 2c0r_A 43 RGAVYEAVHNEAQARLLALLGNPTG--------YKVLFIQGGASTQFAMIPMNFL----KE---------------GQTA 95 (362)
T ss_dssp TSHHHHHHHHHHHHHHHHHTTCCSS--------EEEEEESSHHHHHHHHHHHHHC----CT---------------TCEE
T ss_pred CcHHHHHHHHHHHHHHHHHhCCCCC--------cEEEEECCCchHHHHHHHHhcC----CC---------------CCeE
Confidence 3566777888999999999999752 133 578999999887776431 10 1134
Q ss_pred EecCCcchh--HHHHHHhCCCceEEEecCC---CC-cccHHHHHHHHHHhhhcCCCceEEEEeeccCCccc-cccHHHHH
Q psy13453 635 YTSDQSNSS--VEKSAIIGDVPVRQLRSDD---NG-VLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCA-FDNLEELG 707 (764)
Q Consensus 635 ~~S~~aH~S--v~kAa~~lGl~v~~Vp~d~---~g-~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Ga-iDpl~eIa 707 (764)
++....|++ +...++..| +++.||++. .+ .+|.++++ |.+ .+-+|+++..+|.+|. ++|+++|
T Consensus 96 l~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~------~t~~v~~~~~~n~tG~~~~~l~~i- 165 (362)
T 2c0r_A 96 NYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQD------NAAYLHLTSNETIEGAQFKAFPDT- 165 (362)
T ss_dssp EEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCT------TEEEEEEESEETTTTEECSSCCCC-
T ss_pred EEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cCC------CcCEEEEeCCcCccceeccccccc-
Confidence 444455665 345667779 999999872 22 35666553 322 3568888888999999 5888887
Q ss_pred HHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 708 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 708 ~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
+|+|+|||+||+.+....+ ++..|.++.++|||++ |.|+|+++
T Consensus 166 -----~~~~vivD~a~~~~~~~~~--------~~~~d~~~~s~~K~~g-~~G~G~l~ 208 (362)
T 2c0r_A 166 -----GSVPLIGDMSSDILSRPFD--------LNQFGLVYAGAQKNLG-PSGVTVVI 208 (362)
T ss_dssp -----TTSCEEEECTTTTTSSCCC--------GGGCSEEEEETTTTTC-CSSCEEEE
T ss_pred -----CCCEEEEEChhhccCCccc--------hhHCcEEEEecccccc-CcCcEEEE
Confidence 8999999999987643221 2233999999999997 88888874
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.1e-11 Score=132.62 Aligned_cols=163 Identities=14% Similarity=0.085 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
..+++.+.+++++++|.+.. -++++|||+++..++.++. . ++..|++++.+
T Consensus 77 ~~~~~~a~~~~~~~~~~~~~----------~v~~~~Gs~a~~~al~~~~----~---------------~gd~Vi~~~~~ 127 (425)
T 3ecd_A 77 DEVEALAIERVKRLFNAGHA----------NVQPHSGAQANGAVMLALA----K---------------PGDTVLGMSLD 127 (425)
T ss_dssp CHHHHHHHHHHHHHHTCSEE----------ECCCSSHHHHHHHHHHHHC----C---------------TTCEEEEECC-
T ss_pred HHHHHHHHHHHHHHhCCCCc----------eeecCchHHHHHHHHHHcc----C---------------CCCEEEEcccc
Confidence 35666677889999988652 3568999999988876541 1 12257778888
Q ss_pred chhHH-HHHH--hCCCce--EEEecC-CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcC
Q psy13453 641 NSSVE-KSAI--IGDVPV--RQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYN 714 (764)
Q Consensus 641 H~Sv~-kAa~--~lGl~v--~~Vp~d-~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~g 714 (764)
|.++. ..+. ..|..+ +.++.+ +++.+|+++|+++|++.. +-+|+.+. +..|...++++|+++|++||
T Consensus 128 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~-----~~~v~~~~--~~~~~~~~l~~i~~l~~~~~ 200 (425)
T 3ecd_A 128 AGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHK-----PSLIIAGF--SAYPRKLDFARFRAIADSVG 200 (425)
T ss_dssp -----------------CEEEEECCCTTTSSCCHHHHHHHHHHHC-----CSEEEEEC--SCCCSCCCHHHHHHHHHHHT
T ss_pred cccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhcC-----CcEEEEcc--ccCCCcCCHHHHHHHHHHcC
Confidence 87732 3332 345544 455555 458999999999997531 33666553 33489999999999999999
Q ss_pred CEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 715 IWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 715 lwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
+|+++|.+|+.+....+.+... ++.+|.++.++||++..|.+ |++
T Consensus 201 ~~li~De~~~~g~~~~~~~~~~---~~~~di~~~s~sK~l~g~~~-g~~ 245 (425)
T 3ecd_A 201 AKLMVDMAHIAGVIAAGRHANP---VEHAHVVTSTTHKTLRGPRG-GFV 245 (425)
T ss_dssp CEEEEECGGGHHHHHTTSSCCG---GGTCSEEEEESSGGGCCCSC-EEE
T ss_pred CEEEEECcChHhhhhcccccCc---hhcCcEEEecCCcccCCCCc-EEE
Confidence 9999999976655443322222 22369999999999977764 544
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.1e-11 Score=129.37 Aligned_cols=197 Identities=10% Similarity=-0.008 Sum_probs=133.7
Q ss_pred HHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCC-ccccCCCCCCC-cEEEeCChHHHHHHHHHHHHHHHhhhh
Q psy13453 539 VGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLP-EEFLNCSPGPG-GGIIQSTASEATLVSILVAKRKMINHW 616 (764)
Q Consensus 539 lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p-~~~~~~~~~~~-~GvfTsGgTeANl~Al~aAR~~~~~~~ 616 (764)
+.+.+...+. ....|.......++.+.+.+|+.+.+|.+ -+ .. ..+||+|+|+++..++.+.+..
T Consensus 48 v~~a~~~~~~-~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~-------~~~~i~~t~g~~~al~~~~~~~~~~----- 114 (396)
T 3jtx_A 48 ITDALTASLH-ELEKYPLTAGLPELRQACANWLKRRYDGLTVD-------ADNEILPVLGSREALFSFVQTVLNP----- 114 (396)
T ss_dssp HHHHHHHTGG-GGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCC-------TTTSEEEESSHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhh-hccCCCCCCCcHHHHHHHHHHHHHhcCCCCCC-------CCCeEEEcCCcHHHHHHHHHHHhCC-----
Confidence 3344444443 22334333445789999999999999975 11 13 6899999999998887655210
Q ss_pred ccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCCCC-cccHHHHHHHHHHhhhcCCCceEEEEeeccC
Q psy13453 617 QSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNG-VLRGDALLTAVKEDLAKGLIPCCLIATLGTT 695 (764)
Q Consensus 617 ~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g-~md~~~Le~~I~~~~~~G~~p~~VvataGTT 695 (764)
+. ...+..|+++.-+|.+...++...|.+++.+|.+++| .+|+++|++++.+. +-+|+.+..++
T Consensus 115 g~---------~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~~------~~~v~l~~p~n 179 (396)
T 3jtx_A 115 VS---------DGIKPAIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEVWKR------TKLVFVCSPNN 179 (396)
T ss_dssp ------------CCCCEEEEEESCCHHHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHHT------EEEEEEESSCT
T ss_pred CC---------ccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeecCCCCCccCHHHHHHhhccC------cEEEEEECCCC
Confidence 00 0001357788889999999999999999999997554 68999999999764 34777778899
Q ss_pred Ccccccc---HHHHHHHHHhcCCEEEEeccccccccccchhhhh---h---cCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 696 GTCAFDN---LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHL---K---RGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 696 ~~GaiDp---l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~---l---~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
.+|.+-+ +++|+++|++||+|+++|.+|+.+..-....... . ..-...+-+..+++|.++.| ..+|++
T Consensus 180 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~ 257 (396)
T 3jtx_A 180 PSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFV 257 (396)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEE
T ss_pred CCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcccceEEE
Confidence 9999855 5559999999999999999998753321000000 0 00023467888999965544 445554
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=4.3e-10 Score=123.14 Aligned_cols=161 Identities=16% Similarity=0.093 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
....++.+.+++++|.+. ..+||+ |+++|+.++.+.... .+ +..|+++..+|
T Consensus 91 ~~~~~l~~~la~~~~~~~----------~i~~~s-G~~a~~~~~~~l~~~-~~----------------gd~Vl~~~~~~ 142 (401)
T 2bwn_A 91 AYHRRLEAEIAGLHQKEA----------ALVFSS-AYNANDATLSTLRVL-FP----------------GLIIYSDSLNH 142 (401)
T ss_dssp HHHHHHHHHHHHHTTCSE----------EEEESC-HHHHHHHHHHHHHHH-ST----------------TCEEEEETTCC
T ss_pred HHHHHHHHHHHHHhCCCc----------EEEECC-cHHHHHHHHHHHhcC-CC----------------CCEEEECchhh
Confidence 344556777888888643 345544 555887776653221 01 12578888999
Q ss_pred hhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEec
Q psy13453 642 SSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 721 (764)
Q Consensus 642 ~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDa 721 (764)
.+...+++..|..++.+|.+ |+++|++.+++... ..+.+|+.+..++.+|.+.|+++|+++|++||+|+++|+
T Consensus 143 ~~~~~~~~~~g~~~~~v~~~-----d~~~le~~l~~~~~--~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De 215 (401)
T 2bwn_A 143 ASMIEGIKRNAGPKRIFRHN-----DVAHLRELIAADDP--AAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDE 215 (401)
T ss_dssp HHHHHHHHHSCCCEEEECTT-----CHHHHHHHHHHSCT--TSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHHcCCeEEEEcCC-----CHHHHHHHHHhhcc--CCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEec
Confidence 99999999999999999975 79999999875321 236688889999999999999999999999999999999
Q ss_pred cccccccccchhhh--hhcCC-CcccEEEEcCCccCCCCc
Q psy13453 722 AYAGSALLLPEYAH--LKRGL-EYVDSFDFNTHKWLLVNF 758 (764)
Q Consensus 722 A~Gg~~l~~~~~r~--~l~gi-e~aDSit~d~HK~l~~P~ 758 (764)
||+.+.+ .+.... ...++ +..|-+..+++|.++.|-
T Consensus 216 a~~~g~~-~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G 254 (401)
T 2bwn_A 216 VHAVGMY-GPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG 254 (401)
T ss_dssp TTTTTTS-STTSCCHHHHHTCGGGCSEEEEESSSTTCSCC
T ss_pred ccccccc-CCCCceeeeccCccccCcEEEeechhhccCCC
Confidence 9994432 111110 11122 345888889999998653
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.8e-11 Score=132.69 Aligned_cols=194 Identities=10% Similarity=-0.064 Sum_probs=135.1
Q ss_pred HHHHHHHhhccc-CccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhc
Q psy13453 539 VGDMLSGAFGLI-GFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQ 617 (764)
Q Consensus 539 lad~l~~~lN~n-~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~ 617 (764)
+.+.+...+... ...|.......++++.+.+|+.+.+|++.+ .....++|+|||+++..++.+...
T Consensus 41 v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~------~~~~i~~~~g~~~a~~~~~~~~~~------- 107 (410)
T 3e2y_A 41 VKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQID------PNEEILVAVGAYGSLFNSIQGLVD------- 107 (410)
T ss_dssp HHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCC------TTTSEEEESHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCC------CCCCEEEeCCcHHHHHHHHHHhcC-------
Confidence 334444444322 223443344678899999999999887542 113689999999999888765411
Q ss_pred cCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecC-----------CCCcccHHHHHHHHHHhhhcCCCce
Q psy13453 618 SKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSD-----------DNGVLRGDALLTAVKEDLAKGLIPC 686 (764)
Q Consensus 618 ~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d-----------~~g~md~~~Le~~I~~~~~~G~~p~ 686 (764)
++-.|++..-+|.+....+...|.+++.+|.+ .++.+|+++|++++++. +-
T Consensus 108 ------------~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~~------~~ 169 (410)
T 3e2y_A 108 ------------PGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSK------TK 169 (410)
T ss_dssp ------------TTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCTT------EE
T ss_pred ------------CCCEEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcCCC------ce
Confidence 11247778888999999999999999999886 35679999999988542 44
Q ss_pred EEEEeeccCCcccc---ccHHHHHHHHHhcCCEEEEeccccccccccchhhh--hhcCCCcccEEEEcCCccCCC-CcCc
Q psy13453 687 CLIATLGTTGTCAF---DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAH--LKRGLEYVDSFDFNTHKWLLV-NFDC 760 (764)
Q Consensus 687 ~VvataGTT~~Gai---Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~--~l~gie~aDSit~d~HK~l~~-P~~~ 760 (764)
+|+.+..++.+|.+ +++++|+++|++||+++++|.+|+.+..-...... .+.+....+-+..+++|.++. .+.+
T Consensus 170 ~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~ 249 (410)
T 3e2y_A 170 AIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWKL 249 (410)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGGCC
T ss_pred EEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCCceE
Confidence 77778889999999 78999999999999999999999865432111000 111111234667789999873 3456
Q ss_pred eee
Q psy13453 761 SAM 763 (764)
Q Consensus 761 g~l 763 (764)
|++
T Consensus 250 G~~ 252 (410)
T 3e2y_A 250 GWS 252 (410)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.7e-10 Score=126.12 Aligned_cols=232 Identities=10% Similarity=-0.041 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCccccccCCCCChHHHHHHHHHHhhcc-cCccccCCchHHHHHHHHHHHHHHHcCCCcc
Q psy13453 502 WRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGL-IGFSWLSSPACTELEVLVMNWLGKALGLPEE 580 (764)
Q Consensus 502 ~~~il~~l~~~i~~~~~~~~~P~~~~~~~~~~~~~~~lad~l~~~lN~-n~~~~~~sp~~t~lE~~v~~~la~llG~p~~ 580 (764)
.-.+.+.+.+.-.++..+.....|++.-...+.++.+ .+.+...+.. ....|.......++.+.+.+|+....+.+-+
T Consensus 36 i~~~~~~~~~~~~~~~i~l~~G~y~d~~~~~~~~~~v-~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~ 114 (420)
T 4f4e_A 36 ILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAV-RDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIA 114 (420)
T ss_dssp HHHHHHHHHHCCCSSCEECCCCSCCCTTSCCCCCHHH-HHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHhcCCCCcEEeeeeeeECCCCCccCcHHH-HHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccc
Confidence 3445555544322333333333333322222222343 3334444433 2234444445567777777777554332100
Q ss_pred ccCCCCCCC--cEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEE
Q psy13453 581 FLNCSPGPG--GGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQL 658 (764)
Q Consensus 581 ~~~~~~~~~--~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~V 658 (764)
.. ..++|+|||+++..++...... . ++..|++++-+|.+....+...|.+++.+
T Consensus 115 -------~~~~~i~~t~G~t~al~~~~~~~~~~--~---------------~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v 170 (420)
T 4f4e_A 115 -------AGRVVTAQALGGTGALKIGADFLRTL--N---------------PKAKVAISDPSWENHRALFDMAGFEVVAY 170 (420)
T ss_dssp -------TTCEEEEEEEHHHHHHHHHHHHHHHH--C---------------TTCCEEEEESCCHHHHHHHHHTTCCEEEE
T ss_pred -------cCceEEEECCccHHHHHHHHHHHHHh--C---------------CCCEEEEeCCCcHhHHHHHHHcCCeEEEe
Confidence 12 5799999999998875432211 1 11247788899999999999999999999
Q ss_pred ec--CCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccHHHHHHHHHhcCCEEEEecccccccccc---
Q psy13453 659 RS--DDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLEELGPICQEYNIWLHVDAAYAGSALLL--- 730 (764)
Q Consensus 659 p~--d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~--- 730 (764)
|. ++++.+|+++|++.|++. ...+.+|+.+..++.+|.+ +++++|+++|++||+|+++|.+|++...-.
T Consensus 171 ~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~ 247 (420)
T 4f4e_A 171 PYYDAKTNGVNFDGMLAALNGY---EPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEAD 247 (420)
T ss_dssp ECEETTTTEECHHHHHHHHTTC---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGG
T ss_pred eeeccccCccCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchh
Confidence 98 457899999999999742 1235688888899999998 678899999999999999999998765321
Q ss_pred -chhhhhhcCCCcccEEEEcCCccCCCC-cCcee
Q psy13453 731 -PEYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSA 762 (764)
Q Consensus 731 -~~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~ 762 (764)
..... +.+...-+-+..+++|.++.| ..+|.
T Consensus 248 ~~~~~~-~~~~~~~~i~~~S~SK~~~~~G~RiG~ 280 (420)
T 4f4e_A 248 AAAVRL-FAAANLNVFVSSSFSKSFSLYGERVGA 280 (420)
T ss_dssp GHHHHH-HHHTTCCEEEEEECTTTTTCGGGCEEE
T ss_pred hHHHHH-HHhcCCCEEEEEeCCccCcCcCCCcEE
Confidence 11111 112223356778999988743 23554
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.23 E-value=5.8e-11 Score=134.43 Aligned_cols=152 Identities=13% Similarity=0.100 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcch
Q psy13453 563 LEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNS 642 (764)
Q Consensus 563 lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~ 642 (764)
.-.++.+|+++++|.+ ..++++||++|+..++. ... ++..|+++..+|.
T Consensus 134 ~~~~l~~~la~~~g~~-----------~~i~~~sGt~al~~~l~-----~~~---------------~Gd~Vi~~~~~y~ 182 (464)
T 1ibj_A 134 TRDALESLLAKLDKAD-----------RAFCFTSGMAALSAVTH-----LIK---------------NGEEIVAGDDVYG 182 (464)
T ss_dssp HHHHHHHHHHHHHTCS-----------EEEEESSHHHHHHHHHT-----TSC---------------TTCEEEEESSCCH
T ss_pred HHHHHHHHHHHHhCCC-----------eEEEECCHHHHHHHHHH-----HhC---------------CCCEEEEECCCch
Confidence 4566778999999874 35788999988754432 111 1224677888888
Q ss_pred hHHHH----HHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEE
Q psy13453 643 SVEKS----AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLH 718 (764)
Q Consensus 643 Sv~kA----a~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLH 718 (764)
+...+ +...|..++.+|.+ |+++|+++|++. +-+|+.+..++.+|.+.|+++|+++|++||++++
T Consensus 183 ~~~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~~i~~~------tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~li 251 (464)
T 1ibj_A 183 GSDRLLSQVVPRSGVVVKRVNTT-----KLDEVAAAIGPQ------TKLVWLESPTNPRQQISDIRKISEMAHAQGALVL 251 (464)
T ss_dssp HHHHHHHHTSGGGTCEEEEECTT-----SHHHHHHHCCSS------EEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEE
T ss_pred hHHHHHHHHHHHcCCEEEEeCCC-----CHHHHHHHhccC------ceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEE
Confidence 87654 34568888888875 799999988643 4588889999999999999999999999999999
Q ss_pred EeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCc--eee
Q psy13453 719 VDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDC--SAM 763 (764)
Q Consensus 719 VDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~--g~l 763 (764)
+|.+|+.+....+- . + .+|.++.++||+++.|.|+ |++
T Consensus 252 vDea~~~g~~~~~~-~-----~-~~div~~S~sK~~~g~~Gl~~G~l 291 (464)
T 1ibj_A 252 VDNSIMSPVLSRPL-E-----L-GADIVMHSATKFIAGHSDVMAGVL 291 (464)
T ss_dssp EECTTTCTTTCCGG-G-----T-TCSEEEEETTTTTTCSSCCCCEEE
T ss_pred EECCCcccccCChh-h-----c-CCEEEEECCcccccCCCCCcEEEE
Confidence 99999865432221 1 1 3699999999999988765 765
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=5.4e-11 Score=132.80 Aligned_cols=156 Identities=12% Similarity=0.076 Sum_probs=115.2
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
..|...++|+ .+++++|.+ ..++++|||+||..++.+. .. +...|+
T Consensus 80 ~~p~~~~le~----~lA~l~g~~-----------~~i~~ssGt~Ai~~al~~l----~~---------------~Gd~Vi 125 (415)
T 2fq6_A 80 GTLTHFSLQQ----AMCELEGGA-----------GCVLFPCGAAAVANSILAF----IE---------------QGDHVL 125 (415)
T ss_dssp CCHHHHHHHH----HHHHHHTCS-----------EEEEESSHHHHHHHHHHTT----CC---------------TTCEEE
T ss_pred CCchHHHHHH----HHHHHhCCC-----------eEEEeCCHHHHHHHHHHHH----hC---------------CCCEEE
Confidence 4455555555 667777764 2578899999998877632 11 122577
Q ss_pred ecCCcchhHHHHHH----hCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHH
Q psy13453 636 TSDQSNSSVEKSAI----IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQ 711 (764)
Q Consensus 636 ~S~~aH~Sv~kAa~----~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~ 711 (764)
++...|.+....+. ..|+.++.++.+ |+++|+++|+++ +-+|+....++.+|.+-|+++|+++|+
T Consensus 126 ~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~-----d~~~le~ai~~~------tklV~~e~~~NptG~v~dl~~I~~la~ 194 (415)
T 2fq6_A 126 MTNTAYEPSQDFCSKILSKLGVTTSWFDPL-----IGADIVKHLQPN------TKIVFLESPGSITMEVHDVPAIVAAVR 194 (415)
T ss_dssp EETTSCHHHHHHHHHTGGGGTCEEEEECTT-----CGGGGGGGCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred EeCCCchHHHHHHHHHHHHcCcEEEEECCC-----CHHHHHHhhccC------CcEEEEECCCCCCCEeecHHHHHHHHH
Confidence 88889988776653 368888888764 788898888653 447888889999999999999999999
Q ss_pred h--cCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcC--ceee
Q psy13453 712 E--YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD--CSAM 763 (764)
Q Consensus 712 ~--~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~--~g~l 763 (764)
+ ||+++|||++|+.+....| .. . .+|.++.++||+++.+-+ .|++
T Consensus 195 ~~~~g~~livD~a~a~~~~~~p-~~---~---g~Div~~S~sK~lg~~g~~~~G~l 243 (415)
T 2fq6_A 195 SVVPDAIIMIDNTWAAGVLFKA-LD---F---GIDVSIQAATKYLVGHSDAMIGTA 243 (415)
T ss_dssp HHCTTCEEEEECTTTTTTSSCG-GG---G---TCSEEEEETTTTTTCSSSCCCEEE
T ss_pred hhcCCCEEEEECCCcccccCCc-cc---c---CCeEEEEeCccccCCCCCceEEEE
Confidence 9 9999999999986533222 11 1 359999999999987754 5665
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.3e-11 Score=132.80 Aligned_cols=179 Identities=11% Similarity=0.032 Sum_probs=130.1
Q ss_pred cccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCC-CcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCc
Q psy13453 553 SWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGP-GGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631 (764)
Q Consensus 553 ~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~-~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~ 631 (764)
.|........+.+.+.+|+.+.+|++-+ . ...+||+|||+++..++.+.. . ++
T Consensus 62 ~y~~~~g~~~lr~~la~~~~~~~g~~~~-------~~~~i~~~~g~~~a~~~~~~~~~----~---------------~g 115 (422)
T 3fvs_A 62 QYTKTFGYPPLTKILASFFGELLGQEID-------PLRNVLVTVGGYGALFTAFQALV----D---------------EG 115 (422)
T ss_dssp SCCCTTCCHHHHHHHHHHHHHHHTCCCC-------HHHHEEEESHHHHHHHHHHHHHC----C---------------TT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCCC-------CCCcEEEECChHHHHHHHHHHHc----C---------------CC
Confidence 3444445678899999999999987532 1 258999999999988876541 1 12
Q ss_pred eEEEecCCcchhHHHHHHhCCCceEEEecCC------------CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccc
Q psy13453 632 LVAYTSDQSNSSVEKSAIIGDVPVRQLRSDD------------NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCA 699 (764)
Q Consensus 632 ~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~------------~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Ga 699 (764)
..|++..-+|.+...++...|.+++.+|.+. ++.+|+++|+++++++ +-+|+.+..++.+|.
T Consensus 116 d~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~~------~~~v~~~~p~nptG~ 189 (422)
T 3fvs_A 116 DEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSR------TKALVLNTPNNPLGK 189 (422)
T ss_dssp CEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCTT------EEEEEEESSCTTTCC
T ss_pred CEEEEcCCCchhhHHHHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhhcCCC------ceEEEECCCCCCCCc
Confidence 2477788889999999999999999999875 3479999999988643 447777888999999
Q ss_pred cc---cHHHHHHHHHhcCCEEEEeccccccccccchhhh--hhcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 700 FD---NLEELGPICQEYNIWLHVDAAYAGSALLLPEYAH--LKRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 700 iD---pl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~--~l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
+- ++++|+++|++||+++++|.+|+.+..-...... .+.+....+-+..++||.++.| ..+|++
T Consensus 190 ~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~ 259 (422)
T 3fvs_A 190 VFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWV 259 (422)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEE
T ss_pred CCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCccceEEEE
Confidence 87 6999999999999999999999874322111000 1111112346677899999744 456654
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=5e-11 Score=132.93 Aligned_cols=147 Identities=8% Similarity=-0.030 Sum_probs=111.2
Q ss_pred HHHHHHcCCCccccCCCCCCCcEEE---eCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecC-CcchhH
Q psy13453 569 NWLGKALGLPEEFLNCSPGPGGGII---QSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSD-QSNSSV 644 (764)
Q Consensus 569 ~~la~llG~p~~~~~~~~~~~~Gvf---TsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~-~aH~Sv 644 (764)
+.+++++|.+. .++ +++||+||..++.+.. . +...|++++ ..|...
T Consensus 66 ~~lA~l~g~e~-----------alv~p~~~sGt~Ai~~al~all----~---------------~GD~Vl~~~~~~y~~~ 115 (409)
T 3jzl_A 66 RVYATVFKTEA-----------ALVRPQIISGTHAISTVLFGIL----R---------------PDDELLYITGQPYDTL 115 (409)
T ss_dssp HHHHHHHTCSE-----------EEEETTSCSHHHHHHHHHHHHC----C---------------TTCEEEECSSSCCTTH
T ss_pred HHHHHHhCCCc-----------EEEECCCccHHHHHHHHHHHhc----C---------------CCCEEEEeCCCCcHhH
Confidence 46788888754 355 8999999988776431 1 122466666 677666
Q ss_pred HH----------HHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEee----ccCCccccccHHHHHHHH
Q psy13453 645 EK----------SAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATL----GTTGTCAFDNLEELGPIC 710 (764)
Q Consensus 645 ~k----------Aa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~Vvata----GTT~~GaiDpl~eIa~i~ 710 (764)
.. .+...|+.++.++.+++|.+|+++|+++|++. +-+|+... .++.+|.+.|+++|+++|
T Consensus 116 ~~~~~~~g~~~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~~------tklV~i~~s~g~p~nptg~v~~l~~I~~la 189 (409)
T 3jzl_A 116 EEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTPK------TKMIGIQRSRGYADRPSFTIEKIKEMIVFV 189 (409)
T ss_dssp HHHHTSSSSSSSCTGGGTCEEEECCCCTTSCCCHHHHHHHCCTT------EEEEEEECSCTTSSSCCCCHHHHHHHHHHH
T ss_pred HHHHhcccchhhHHHHcCCEEEEeCCCCCCCcCHHHHHHhccCC------CeEEEEECCCCCCCCCcCccccHHHHHHHH
Confidence 64 33456889999999989999999999998653 44777777 889999999999999999
Q ss_pred Hh--cCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 711 QE--YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 711 ~~--~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
++ ||+|+|||.||+.+...... .-. .+|.++.++||+++.+
T Consensus 190 ~~~~~~~~livD~a~~~~~~~~~p---~~~---g~Div~~S~sK~lgg~ 232 (409)
T 3jzl_A 190 KNINPEVIVFVDNCYGEFVEYQEP---PEV---GADIIAGSLIKNPGGG 232 (409)
T ss_dssp HHHCTTCEEEEECTTCTTTSSCCS---GGG---TCSEEEEETTSGGGTT
T ss_pred HhhCCCCEEEEeCCcccccccCCc---ccc---CCeEEEECccccCCcc
Confidence 99 99999999999875432211 111 3699999999998864
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=8.2e-11 Score=130.83 Aligned_cols=177 Identities=14% Similarity=0.047 Sum_probs=120.7
Q ss_pred cccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCce
Q psy13453 553 SWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKL 632 (764)
Q Consensus 553 ~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~ 632 (764)
.|.......++++.+.+++... |.+- .....++|+|||+|+..++.+.+. ++.
T Consensus 91 ~y~~~~g~~~lr~~la~~~~~~-~~~~-------~~~~v~~t~g~t~al~~~~~~l~~-------------------~gd 143 (427)
T 3dyd_A 91 GYAPSIGFLSSREEIASYYHCP-EAPL-------EAKDVILTSGCSQAIDLCLAVLAN-------------------PGQ 143 (427)
T ss_dssp SCCCTTCCHHHHHHHHHHHCBT-TBCC-------CGGGEEEESSHHHHHHHHHHHHCC-------------------TTC
T ss_pred CCCCCCCcHHHHHHHHHHHhhc-CCCC-------ChHHEEEecCcHHHHHHHHHHhcC-------------------CCC
Confidence 3433444555665555554432 3221 114679999999999888776421 122
Q ss_pred EEEecCCcchhHHHHHHhCCCceEEEecC--CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc---HHHHH
Q psy13453 633 VAYTSDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN---LEELG 707 (764)
Q Consensus 633 vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d--~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp---l~eIa 707 (764)
.|+++.-+|.....++...|++++.+|.+ .++.+|+++|+++|++. +.+|+.+..++.+|.+-+ +++|+
T Consensus 144 ~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~------~~~v~i~~p~nptG~~~~~~~l~~i~ 217 (427)
T 3dyd_A 144 NILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDEK------TACLIVNNPSNPCGSVFSKRHLQKIL 217 (427)
T ss_dssp EEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCCTT------EEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred EEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccC------CCEEEEECCCCCCCCCCCHHHHHHHH
Confidence 57788889999999999999999999986 46789999999988543 447777888999999988 99999
Q ss_pred HHHHhcCCEEEEeccccccccccchhhhhhcCC-CcccEE-EEcCCccCCCC-cCceee
Q psy13453 708 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGL-EYVDSF-DFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 708 ~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gi-e~aDSi-t~d~HK~l~~P-~~~g~l 763 (764)
++|++||+++++|.||+++..-...+.. +..+ ...+.| ..++||.++.| ..+|++
T Consensus 218 ~~~~~~~~~~i~Deay~~~~~~g~~~~~-~~~~~~~~~vi~~~S~sK~~~~~G~riG~~ 275 (427)
T 3dyd_A 218 AVAARQCVPILADEIYGDMVFSDCKYEP-LATLSTDVPILSCGGLAKRWLVPGWRLGWI 275 (427)
T ss_dssp HHHHHTTCCEEEECTTTTCBCSSCCCCC-GGGGCSSCCEEEEEESTTTSSCGGGCCEEE
T ss_pred HHHHHCCCEEEEEcCchhhccCCCcCcc-HHHhCCCCcEEEEeeccccCCCcCcceEEE
Confidence 9999999999999999985432111100 0111 112334 45999976544 335554
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.4e-11 Score=136.31 Aligned_cols=160 Identities=9% Similarity=0.024 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecC-Ccch
Q psy13453 564 EVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSD-QSNS 642 (764)
Q Consensus 564 E~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~-~aH~ 642 (764)
.+++.+++++++|.+... .-+++++||+||..++.+.. . +...|++++ ..|.
T Consensus 67 ~~~l~~~la~~~g~~~~~--------~~i~~~sGt~Ai~~al~al~----~---------------~Gd~Vl~~~~~~y~ 119 (431)
T 3ht4_A 67 RDTLEKVYADVFGAEAGL--------VRPQIISGTHAISTALFGIL----R---------------PGDELLYITGKPYD 119 (431)
T ss_dssp HHHHHHHHHHHTTCSEEC--------CBTTSCSHHHHHHHHHHTTC----C---------------TTCEEEECSSSCCT
T ss_pred HHHHHHHHHHHhCCCccc--------ccceeeCHHHHHHHHHHHhC----C---------------CCCEEEEeCCCCch
Confidence 455667899999987531 11224578999888875321 0 122466666 7888
Q ss_pred hHHHHHHh----------CCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEee----ccCCccccccHHHHHH
Q psy13453 643 SVEKSAII----------GDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATL----GTTGTCAFDNLEELGP 708 (764)
Q Consensus 643 Sv~kAa~~----------lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~Vvata----GTT~~GaiDpl~eIa~ 708 (764)
+....+.+ .|++++.+|.+++|.+|+++|+++|++. +-+|+.+. .++.+|..+++++|++
T Consensus 120 ~~~~~~~l~g~~~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~~~------tk~V~i~~sp~np~~~~~~~~~l~~i~~ 193 (431)
T 3ht4_A 120 TLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIHSN------TKMIGIQRSKGYATRPSFTISQIKEMIA 193 (431)
T ss_dssp THHHHTTSSSCSSSCSGGGTCEEEECCBCTTSSBCHHHHHHHCCTT------EEEEEEECSCTTSSSCCCCHHHHHHHHH
T ss_pred hHHHHHhhcccccchHHHcCCEEEEeCCCCCCCcCHHHHHhhcCCC------CeEEEEECCCCCCCCCcCCHHHHHHHHH
Confidence 88766543 6889999999989999999999998653 44777776 7788899999999999
Q ss_pred HHHh--cCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCC---CcCceee
Q psy13453 709 ICQE--YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLV---NFDCSAM 763 (764)
Q Consensus 709 i~~~--~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~---P~~~g~l 763 (764)
+|++ +|+|++||.||+.+........ -| +|.++.++||+++. |.| |++
T Consensus 194 la~~~~~~~~livDea~~~~~~~~~~~~---~g---~Di~~~S~sK~lgg~~~~~G-G~v 246 (431)
T 3ht4_A 194 FVKEIKPDVVVFVDNCYGEFIEEQEPCH---VG---ADLMAGSLIKNPGGGIVKTG-GYI 246 (431)
T ss_dssp HHHHHCTTCEEEEECTTCTTSSSCCGGG---TT---CSEEEEETTSGGGTTTCSSC-EEE
T ss_pred HHHhhCCCCEEEEeCCChhhccCCCccc---cC---CeEEEcCccccCCCCCCCce-EEE
Confidence 9999 9999999999998754222111 13 59999999999654 555 554
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.5e-10 Score=126.73 Aligned_cols=166 Identities=17% Similarity=0.126 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
....++.+++++++|. + ..+||+|||+|+..++.+++..... +..+ ++-+|+.+...|
T Consensus 82 ~~~~~l~~~la~~~g~-~----------~v~~~~gg~~a~~~al~~~~~~~~~--~~~~---------~~~vi~~~~~yh 139 (397)
T 2ord_A 82 RPQMELAELLSKNTFG-G----------KVFFANTGTEANEAAIKIARKYGKK--KSEK---------KYRILSAHNSFH 139 (397)
T ss_dssp HHHHHHHHHHHHTTTS-C----------EEEEESSHHHHHHHHHHHHHHHHHH--HCTT---------CCEEEEEBTCCC
T ss_pred HHHHHHHHHHHHhcCC-C----------eEEEeCCHHHHHHHHHHHHHHHhhc--CCCC---------CceEEEEcCCcC
Confidence 4556677788888873 2 4789999999999999887643211 0000 123566667778
Q ss_pred hhHHHHHHhCCCc------------eEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccc----cccHHH
Q psy13453 642 SSVEKSAIIGDVP------------VRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCA----FDNLEE 705 (764)
Q Consensus 642 ~Sv~kAa~~lGl~------------v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Ga----iDpl~e 705 (764)
.+...++...|.. ++.+|.+ |+++|+++|++ .+.+|+.+..++.+|. .+++++
T Consensus 140 ~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~-----d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~~l~~ 208 (397)
T 2ord_A 140 GRTLGSLTATGQPKYQKPFEPLVPGFEYFEFN-----NVEDLRRKMSE------DVCAVFLEPIQGESGIVPATKEFLEE 208 (397)
T ss_dssp CSSHHHHHHSBCHHHHGGGCSCCTTEEEECTT-----CHHHHHHHCCT------TEEEEEECSEECTTTCEECCHHHHHH
T ss_pred CCchhhhhccCChhhccccCCCCCCeeEecCC-----CHHHHHHHhhc------CeEEEEEecccCCCCcccCCHHHHHH
Confidence 8887788887765 7777753 89999998864 2558888889999998 489999
Q ss_pred HHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 706 LGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 706 Ia~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
|+++|++||+|+++|.+|++............-++ .+|.+++ +|+++.++.+|++
T Consensus 209 l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~d~~s~--sK~~~~G~r~G~~ 263 (397)
T 2ord_A 209 ARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGV-VPDVLTT--AKGLGGGVPIGAV 263 (397)
T ss_dssp HHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTC-CCSEEEE--CGGGGTTSCCEEE
T ss_pred HHHHHHHcCCEEEEEecccCCccCccchhhhhhCC-CCCeeee--ccccCCCcCeEEE
Confidence 99999999999999999986322111111111132 3686655 8999976777775
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.18 E-value=4.2e-11 Score=134.33 Aligned_cols=168 Identities=14% Similarity=0.038 Sum_probs=112.4
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
..+....+|..+.+++++++|.+.. -+++++||+||..++.++++ +...|+
T Consensus 85 g~~~~~~~e~~a~~~la~~~g~~~~----------~v~~~sGs~a~~~a~~~~~~-------------------~Gd~Vl 135 (447)
T 3h7f_A 85 GCEHVDVVENLARDRAKALFGAEFA----------NVQPHSGAQANAAVLHALMS-------------------PGERLL 135 (447)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSEE----------ECCCSSHHHHHHHHHHHHCC-------------------TTCEEE
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCce----------EEEeCCHHHHHHHHHHHhcC-------------------CCCEEE
Confidence 3445556777777999999998652 34478899999888775421 112466
Q ss_pred ecCCcchh-HHHH--HHhC--CCceEEEecC-CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHH
Q psy13453 636 TSDQSNSS-VEKS--AIIG--DVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPI 709 (764)
Q Consensus 636 ~S~~aH~S-v~kA--a~~l--Gl~v~~Vp~d-~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i 709 (764)
+++.+|.+ +... .... +..+..++++ +++.+|+++|++++++.. |-+|+.+.+++.++. ++++|+++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~-----~~~i~~~~~~~~~~~--~l~~i~~l 208 (447)
T 3h7f_A 136 GLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFR-----PKVIIAGWSAYPRVL--DFAAFRSI 208 (447)
T ss_dssp EECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHHHHC-----CSEEEEECSSCCSCC--CHHHHHHH
T ss_pred ecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHHHHHHHhcC-----CeEEEEcCCCCCCcc--CHHHHHHH
Confidence 77777755 2111 1111 3345556666 568899999999997642 335555555554443 99999999
Q ss_pred HHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 710 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 710 ~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
|++||++||+|.+|+.++.....+... ++.+|.++.++||+++.|.+ |++
T Consensus 209 ~~~~g~lli~Dea~~~g~~~~g~~~~~---~~~~di~~~s~sK~l~G~~g-G~i 258 (447)
T 3h7f_A 209 ADEVGAKLLVDMAHFAGLVAAGLHPSP---VPHADVVSTTVHKTLGGGRS-GLI 258 (447)
T ss_dssp HHHHTCEEEEECTTTHHHHHTTSSCCS---TTTCSEEEEESSGGGCCCSC-EEE
T ss_pred HHHcCCEEEEECCchhhhhcCCCCCCC---CCCCcEEEecCCcCCCCCCe-EEE
Confidence 999999999999986554332221111 24569999999999987866 654
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=4.8e-10 Score=123.28 Aligned_cols=202 Identities=9% Similarity=0.007 Sum_probs=130.4
Q ss_pred HHHHHHHHhh-c-ccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEE--eCChHHHHHHHHHHHHHHHh
Q psy13453 538 IVGDMLSGAF-G-LIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGII--QSTASEATLVSILVAKRKMI 613 (764)
Q Consensus 538 ~lad~l~~~l-N-~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~Gvf--TsGgTeANl~Al~aAR~~~~ 613 (764)
.+.+.+...+ + .....|...+...++.+.+.+|+....|.+-. ....+| |+|||+|+..++..++..
T Consensus 52 ~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~-------~~~v~~~~t~gg~~a~~~~~~~~~~~-- 122 (412)
T 1ajs_A 52 VVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQ-------EKRVGGVQSLGGTGALRIGAEFLARW-- 122 (412)
T ss_dssp HHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH-------TTCEEEEEEEHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHhhhChhhccCCCCCCCCHHHHHHHHHHHhcCCCCccC-------CCcEEEEECCCcHHHHHHHHHHHHHh--
Confidence 3444445444 2 12233434445567777777776544333100 125788 999999998887544321
Q ss_pred hhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCc-eEEEecC--CCCcccHHHHHHHHHHhhhcCCCceEEEE
Q psy13453 614 NHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVP-VRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLIA 690 (764)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~-v~~Vp~d--~~g~md~~~Le~~I~~~~~~G~~p~~Vva 690 (764)
.. +.. ..+..|++..-+|.+...++...|.+ ++.+|.+ +++.+|+++|++++++. +....+|+.
T Consensus 123 ~~-g~~---------~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~~ 189 (412)
T 1ajs_A 123 YN-GTN---------NKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENA---PEFSIFVLH 189 (412)
T ss_dssp SS-SSS---------CCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHS---CTTCEEEEE
T ss_pred Cc-CcC---------CCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeecCCCCccCHHHHHHHHHhC---CCCcEEEEE
Confidence 11 000 00024677788899999999999999 9999984 57889999999999753 223557777
Q ss_pred eeccCCcccc---ccHHHHHHHHHhcCCEEEEecccccccccc---c--hhhhhhcCCCcccEEEEcCCccCCCCcC--c
Q psy13453 691 TLGTTGTCAF---DNLEELGPICQEYNIWLHVDAAYAGSALLL---P--EYAHLKRGLEYVDSFDFNTHKWLLVNFD--C 760 (764)
Q Consensus 691 taGTT~~Gai---Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~---~--~~r~~l~gie~aDSit~d~HK~l~~P~~--~ 760 (764)
+..++.+|.+ +++++|+++|++||+|+++|.+|.++..-. + .... +.+...-+-+..++||.++. .| +
T Consensus 190 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~~~-~G~ri 267 (412)
T 1ajs_A 190 ACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRY-FVSEGFELFCAQSFSKNFGL-YNERV 267 (412)
T ss_dssp SSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHH-HHHTTCCEEEEEECTTTSCC-GGGCE
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHH-HhccCCcEEEEEecccccCC-CCcce
Confidence 8889999998 677889999999999999999988754321 1 1111 11111113668899998764 34 5
Q ss_pred eee
Q psy13453 761 SAM 763 (764)
Q Consensus 761 g~l 763 (764)
|++
T Consensus 268 G~~ 270 (412)
T 1ajs_A 268 GNL 270 (412)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=6.5e-10 Score=121.73 Aligned_cols=227 Identities=9% Similarity=-0.041 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHcCCCCCCCCCccccccCCCCChHHHHHHHHHHhhc-ccCccccCCchHHHHHHHHHHHHHHHcCCCccc
Q psy13453 503 RHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFG-LIGFSWLSSPACTELEVLVMNWLGKALGLPEEF 581 (764)
Q Consensus 503 ~~il~~l~~~i~~~~~~~~~P~~~~~~~~~~~~~~~lad~l~~~lN-~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~ 581 (764)
-.+.+.+...-.++..+.....|+++...+...+.+ .+.+..... .....|.......++-+.+.+|+....|++-+
T Consensus 16 ~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v-~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~- 93 (401)
T 7aat_A 16 LGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCV-RKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFK- 93 (401)
T ss_dssp HHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHH-HHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH-
T ss_pred HHHHHHHhhCCCCCceeeeeeeEECCCCCEechHHH-HHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCccccc-
Confidence 344444444322333334444454555444433333 333333332 22333444444556666677777655554211
Q ss_pred cCCCCCCCcEEE--eCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEe
Q psy13453 582 LNCSPGPGGGII--QSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLR 659 (764)
Q Consensus 582 ~~~~~~~~~Gvf--TsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp 659 (764)
....+| |+|||+|+..++.+.+... . +.-.|++++-+|.+....++..|.+++.+|
T Consensus 94 ------~~~i~~v~t~G~~~al~~~~~~l~~~~-~---------------~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~ 151 (401)
T 7aat_A 94 ------SGRYVTVQGISGTGSLRVGANFLQRFF-K---------------FSRDVYLPKPSWGNHTPIFRDAGLQLQAYR 151 (401)
T ss_dssp ------TTCEEEEEEEHHHHHHHHHHHHHHHHC-T---------------TCCEEEEEESCCTTHHHHHHHTTCEEEEEE
T ss_pred ------cCceEEEecCcchHHHHHHHHHHHHhc-c---------------CCCEEEEcCCCchhHHHHHHHcCCeeEeee
Confidence 124556 9999999988876654321 1 122577888999999999999999999999
Q ss_pred cC--CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccHHHHHHHHHhcCCEEEEeccccccccccc---
Q psy13453 660 SD--DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLEELGPICQEYNIWLHVDAAYAGSALLLP--- 731 (764)
Q Consensus 660 ~d--~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~--- 731 (764)
.+ +++.+|+++|++.+++. ...+.+|+.+..++.||.+ +++++|+++|++||+|+++|.||+....-..
T Consensus 152 ~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~ 228 (401)
T 7aat_A 152 YYDPKTCSLDFTGAMEDISKI---PEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRD 228 (401)
T ss_dssp CEETTTTEECHHHHHHHHTTS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHH
T ss_pred eeccccCccCHHHHHHHHHhC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCcccc
Confidence 85 47899999999988752 2245688888899999954 6789999999999999999999987543211
Q ss_pred --hhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 732 --EYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 732 --~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
..+... ....-.-+..++||.++.|
T Consensus 229 ~~~~~~~~-~~~~~~i~~~S~sK~~~~~ 255 (401)
T 7aat_A 229 AWALRHFI-EQGIDVVLSQSYAKNMGLY 255 (401)
T ss_dssp THHHHHHH-HTTCCCEEEEECTTTSCCG
T ss_pred HHHHHHHH-hcCCcEEEEecCCcccccc
Confidence 011111 1112246779999988744
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=7.5e-10 Score=120.82 Aligned_cols=179 Identities=12% Similarity=0.027 Sum_probs=121.9
Q ss_pred cccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEE--eCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccC
Q psy13453 553 SWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGII--QSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRN 630 (764)
Q Consensus 553 ~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~Gvf--TsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~ 630 (764)
.|.......++.+.+.+|+... +.++ ...+| |+|||+|+..++.+.+... +
T Consensus 64 ~y~~~~g~~~lr~~la~~~~~~-~~~~---------~~v~~~~~~g~~~a~~~~~~~~~~~~-~---------------- 116 (394)
T 2ay1_A 64 TYAGLSGEPEFQKAMGELILGD-GLKS---------ETTATLATVGGTGALRQALELARMAN-P---------------- 116 (394)
T ss_dssp CCCCSSCCHHHHHHHHHHHHGG-GCCG---------GGEEEEEEEHHHHHHHHHHHHHHHHC-T----------------
T ss_pred CCCCCCCcHHHHHHHHHHHhCC-CCCc---------ccEEEEecCCchhHHHHHHHHHHhcC-C----------------
Confidence 3433444566777777766322 2233 25677 9999999998887665321 1
Q ss_pred ceEEEecCCcchhHHHHHHhCCCceEEEecC--CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc---cHHH
Q psy13453 631 KLVAYTSDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD---NLEE 705 (764)
Q Consensus 631 ~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d--~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD---pl~e 705 (764)
+..|++..-+|.+...++...|.+++.+|.+ +++.+|+++|++++++. .....+++.+..++.+|.+- ++++
T Consensus 117 gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~~~~~~~~nptG~~~~~~~l~~ 193 (394)
T 2ay1_A 117 DLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAA---KKGDMVLLHGCCHNPTGANLTLDQWAE 193 (394)
T ss_dssp TCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTC---CTTCEEEEESSSCTTTCCCCCHHHHHH
T ss_pred CCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHH
Confidence 1136677888999999999999999999986 57889999999999753 11245677788889999885 5678
Q ss_pred HHHHHHhcCCEEEEecccccccccc--c--hhhhhhcCCCccc-EEEEcCCccCCCC-cCceee
Q psy13453 706 LGPICQEYNIWLHVDAAYAGSALLL--P--EYAHLKRGLEYVD-SFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 706 Ia~i~~~~glwLHVDaA~Gg~~l~~--~--~~r~~l~gie~aD-Sit~d~HK~l~~P-~~~g~l 763 (764)
|+++|++||+++++|.+|+++..-. + .... +... ..| -+..++||+++.| ..+|.+
T Consensus 194 i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~-~~~~-~~~~i~~~s~sK~~~~~G~riG~~ 255 (394)
T 2ay1_A 194 IASILEKTGALPLIDLAYQGFGDGLEEDAAGTRL-IASR-IPEVLIAASCSKNFGIYRERTGCL 255 (394)
T ss_dssp HHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHH-HHHH-CSSEEEEEECTTTTTCGGGCEEEE
T ss_pred HHHHHHHCCCEEEEecCccccccCcccchHHHHH-Hhhc-CCCEEEEEeccCCCcCcCCccceE
Confidence 8999999999999999998754311 0 1111 1111 113 4466899998743 334654
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-10 Score=125.50 Aligned_cols=165 Identities=17% Similarity=0.126 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchh
Q psy13453 564 EVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSS 643 (764)
Q Consensus 564 E~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~S 643 (764)
..++.+++++++|.++ ..++|+|||+++..++.++|..... +..+ ++-+++.+..-|.+
T Consensus 72 ~~~l~~~la~~~g~~~----------~v~~~~g~t~a~~~~~~~~~~~~~~--~~~g---------~~~vl~~~~~y~~~ 130 (375)
T 2eh6_A 72 QEELAHKLVKHFWTEG----------KVFFANSGTESVEAAIKLARKYWRD--KGKN---------KWKFISFENSFHGR 130 (375)
T ss_dssp HHHHHHHHHHTSSSCE----------EEEEESSHHHHHHHHHHHHHHHHHH--TTCC---------CCEEEEEBTCCCCS
T ss_pred HHHHHHHHHhhcCCCC----------eEEEeCchHHHHHHHHHHHHHHhcc--CCCC---------CCEEEEECCCcCCC
Confidence 3456688888888842 4789999999999998876532210 0000 02244444445766
Q ss_pred HHHHHHhCCCc------------eEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc----HHHHH
Q psy13453 644 VEKSAIIGDVP------------VRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN----LEELG 707 (764)
Q Consensus 644 v~kAa~~lGl~------------v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp----l~eIa 707 (764)
...+....|.. +..+|. +|+++|+++|+++ +.+|+.+..++.+|.+.| +++|+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~------~~~v~~~~~~~~tG~~~~~~~~l~~i~ 199 (375)
T 2eh6_A 131 TYGSLSATGQPKFHKGFEPLVPGFSYAKL-----NDIDSVYKLLDEE------TAGIIIEVIQGEGGVNEASEDFLSKLQ 199 (375)
T ss_dssp SHHHHHHCBCGGGTTTTCSCCSSEEEECT-----TCHHHHHTTCCTT------EEEEEECSEETTTTSEECCHHHHHHHH
T ss_pred chhhhhhcCCccccCCCCCCCCCceeCCC-----chHHHHHHHhcCC------eEEEEEeCccCCCCCcCCCHHHHHHHH
Confidence 66555554332 344433 5899999888642 457777888888999977 99999
Q ss_pred HHHHhcCCEEEEeccccccccccch-hhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 708 PICQEYNIWLHVDAAYAGSALLLPE-YAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 708 ~i~~~~glwLHVDaA~Gg~~l~~~~-~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
++|++||+|+|+|.+|++... .+. .....-|. .+|.++++ |+++.++++|+++
T Consensus 200 ~~~~~~~~~li~De~~~~~~~-~~~~~~~~~~~~-~~d~~s~S--K~~~~g~~~G~~~ 253 (375)
T 2eh6_A 200 EICKEKDVLLIIDEVQTGIGR-TGEFYAYQHFNL-KPDVIALA--KGLGGGVPIGAIL 253 (375)
T ss_dssp HHHHHHTCEEEEECTTTTTTT-TSSSSGGGGGTC-CCSEEEEC--GGGGTTSCCEEEE
T ss_pred HHHHHhCCEEEEeccccCCCC-CCcchhhhhcCC-CCCEEEEc--ccccCCCCeEEEE
Confidence 999999999999999996321 111 11111232 36888877 8888888888763
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=5.1e-10 Score=123.17 Aligned_cols=231 Identities=10% Similarity=-0.086 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHcCCCCCCCCCccccccCCCCChHHHHHHHHHH-hhcc-cCccccCCchHHHHHHHHHHHHHHHcCCCcc
Q psy13453 503 RHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSG-AFGL-IGFSWLSSPACTELEVLVMNWLGKALGLPEE 580 (764)
Q Consensus 503 ~~il~~l~~~i~~~~~~~~~P~~~~~~~~~~~~~~~lad~l~~-~lN~-n~~~~~~sp~~t~lE~~v~~~la~llG~p~~ 580 (764)
..+.+.+.+.-.++.....+..++++.......+. +.+.+.. .+.. ....|...+...++.+.+.+|+.+..|.+-+
T Consensus 17 ~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~-v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~ 95 (412)
T 1yaa_A 17 FGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPS-VKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQ 95 (412)
T ss_dssp HHHHHHHHTCCCSSCEECSSCCCBCTTSCBCCCHH-HHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHhcCCCCCeEEEeeeeeeCCCCCCCCcHH-HHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCC
Confidence 44555444321122333444444444322222333 4444444 4432 2223434445667777777777655453211
Q ss_pred ccCCCCCCCcEEE--eCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEE
Q psy13453 581 FLNCSPGPGGGII--QSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQL 658 (764)
Q Consensus 581 ~~~~~~~~~~Gvf--TsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~V 658 (764)
....+| |+|||+|+..++..++.. .+ +..|+++.-+|.+...+++..|.+++.+
T Consensus 96 -------~~~i~~~~t~g~~~a~~~~~~~~~~~-~~----------------gd~Vl~~~p~~~~~~~~~~~~g~~~~~v 151 (412)
T 1yaa_A 96 -------EDRVISVQSLSGTGALHISAKFFSKF-FP----------------DKLVYLSKPTWANHMAIFENQGLKTATY 151 (412)
T ss_dssp -------TTCEEEEEEEHHHHHHHHHHHHHHHH-CT----------------TCCEEEEESCCTTHHHHHHTTTCCEEEE
T ss_pred -------cceEEEEeccchHhHHHHHHHHHHHh-CC----------------CCEEEEeCCCCccHHHHHHHcCceEEEE
Confidence 125788 999999988775443321 11 1136777888999999999999999999
Q ss_pred ec-C-CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccHHHHHHHHHhcCCEEEEecccccccccc---
Q psy13453 659 RS-D-DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLEELGPICQEYNIWLHVDAAYAGSALLL--- 730 (764)
Q Consensus 659 p~-d-~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~--- 730 (764)
|. + +++.+|+++|++++++.. ....+++.+..++.+|.+ +++++|+++|++||+++++|.+|+....-.
T Consensus 152 ~~~~~~~~~~d~~~l~~~l~~~~---~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~ 228 (412)
T 1yaa_A 152 PYWANETKSLDLNGFLNAIQKAP---EGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDK 228 (412)
T ss_dssp ECEETTTTEECHHHHHHHHHHSC---TTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHH
T ss_pred eeecCCCCccCHHHHHHHHHhCC---CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccc
Confidence 98 5 378899999999997531 123456668889999998 467789999999999999999997643211
Q ss_pred c--hhhhhhcCCCc---ccEEEEcCCccCCCCcC--ceee
Q psy13453 731 P--EYAHLKRGLEY---VDSFDFNTHKWLLVNFD--CSAM 763 (764)
Q Consensus 731 ~--~~r~~l~gie~---aDSit~d~HK~l~~P~~--~g~l 763 (764)
+ .... +..... -+-+..++||.++ |.| +|.+
T Consensus 229 ~~~~~~~-~~~~~~~~~~~i~~~s~sK~~~-~~GlriG~~ 266 (412)
T 1yaa_A 229 DAYAVRL-GVEKLSTVSPVFVCQSFAKNAG-MYGERVGCF 266 (412)
T ss_dssp HTHHHHH-HHHHTTTTCCEEEEEECTTTSC-CGGGCEEEE
T ss_pred hhHHHHH-HHhcCCCCcceEEEeccCCCCC-CcCCcceEE
Confidence 0 1111 111111 1456789999887 544 4654
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.8e-10 Score=130.27 Aligned_cols=226 Identities=8% Similarity=-0.025 Sum_probs=147.6
Q ss_pred ccccCCcceeeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccc-cCchhhh
Q psy13453 11 AYPSETLSLLIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDI-QSLNAPV 89 (764)
Q Consensus 11 ~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~i-Dpi~~ia 89 (764)
...++. .|.|..++++++|+.. +.||+++++++|+++|+++|+++ +.+++.+.++ ++|.+ ||+++++
T Consensus 159 Vlv~~~---~h~~~~~~~~~~G~~v---v~v~~~~~~~~d~~~L~~~i~~~-----t~~v~~~~pn-~~G~~~~~l~~i~ 226 (474)
T 1wyu_B 159 VLVPDS---AHGSNPATASMAGYQV---REIPSGPEGEVDLEALKRELGPH-----VAALMLTNPN-TLGLFERRILEIS 226 (474)
T ss_dssp EEEETT---SCTHHHHHHHHTTCEE---EEECBCTTSSBCHHHHHHHCSTT-----EEEEEECSSC-TTSCCCTTHHHHH
T ss_pred EEEeCC---cChhhHHHHHHCCCEE---EEecCCCCCCcCHHHHHHhhCCC-----ceEEEEECCC-CCcccCCCHHHHH
Confidence 444555 7999999999999976 99999999999999999999753 2344566676 59999 8999988
Q ss_pred c-----CCCceeccccc---------------------cc-----c------ceeeeecCCCcccccccccc---ccCCc
Q psy13453 90 S-----NGPLKVGGVLR---------------------RV-----Y------SSCLVPRGQKSLRTTVLFHF---LFQHW 129 (764)
Q Consensus 90 ~-----~~wlHVDa~l~---------------------~~-----y------~s~ll~rd~~~l~~~~s~~~---d~~d~ 129 (764)
+ ++|+|+|++.. ++ + +++++.+++ ... .+...+ +-..+
T Consensus 227 ~l~~~~g~~li~Dea~~~~~~g~~~~~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~-l~~-~l~~~~~~~~g~~~ 304 (474)
T 1wyu_B 227 RLCKEAGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAH-LAP-YLPVPLVERGEEGF 304 (474)
T ss_dssp HHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGG-GGG-GCCSCEEEECSSCE
T ss_pred HHHHHcCCEEEEeCchhhhhccCCCcccCCCcEEEEeCccccccCCCCCCCCeEEEEEcHH-HHH-hCCCCeeeccCCee
Confidence 6 89999999531 11 0 123333321 100 000000 00001
Q ss_pred ----ccC---------CCCcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC-CceeEEEEeec
Q psy13453 130 ----QIP---------LGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPP-SMGLVCFRLKV 195 (764)
Q Consensus 130 ----tle---------~SRr~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P-~l~iV~Fry~P 195 (764)
+.+ +.-.....+.|+.++.+|.++++++.++..++++++.+.|++. ++++..++ .+..+.+.+ +
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~-~ 382 (474)
T 1wyu_B 305 YLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK-GYRVPYDGPSMHEFVAQP-P 382 (474)
T ss_dssp EEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCSSCSSCCSCEEEBC-S
T ss_pred EecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcEecCCCCcceEEEEEc-C
Confidence 001 1111234577999999999999999999999999999999997 88874433 332223322 1
Q ss_pred cccccccccccCccCCccHHHHHHHHHHHhcCcEEEEece-eCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 196 RFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGS-FQDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 196 ~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~-l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
. +.+ ..++.++|.++|+....... .....++|++++. .+++++++.+++.|+++.++
T Consensus 383 ~--------------~~~--~~~l~~~L~~~Gi~~~~~~~~~~~~~~lRis~~~-~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 383 E--------------GFR--ALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTE-TEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp T--------------TCC--HHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCT-TSCHHHHHHHHHHHHHHHTS
T ss_pred C--------------CCC--HHHHHHHHHHCCccccccccccccCCEEEEEeec-CCCHHHHHHHHHHHHHHHHh
Confidence 1 111 25688888888986322110 1124679997663 45789999999999887643
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-10 Score=129.94 Aligned_cols=147 Identities=10% Similarity=-0.005 Sum_probs=107.8
Q ss_pred HHHHHHcCCCccccCCCCCCCcEEE---eCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecC-CcchhH
Q psy13453 569 NWLGKALGLPEEFLNCSPGPGGGII---QSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSD-QSNSSV 644 (764)
Q Consensus 569 ~~la~llG~p~~~~~~~~~~~~Gvf---TsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~-~aH~Sv 644 (764)
+.+++++|.+. .++ +++||+||..++.+. .. +...|++++ ..|...
T Consensus 81 ~~lA~l~g~e~-----------alv~p~~~sGt~A~~~al~al----l~---------------pGD~Vl~~~~~~y~~~ 130 (427)
T 3hvy_A 81 RVYANIFNTES-----------AFVRPHFVNGTHAIGAALFGN----LR---------------PNDTMMSICGMPYDTL 130 (427)
T ss_dssp HHHHHHHTCSE-----------EEEETTCCSHHHHHHHHHHHT----CC---------------TTCEEEECSSSCCGGG
T ss_pred HHHHHHhCCCc-----------eEEeCCCCcHHHHHHHHHHHh----cC---------------CCCEEEEeCCCCchhH
Confidence 56788888754 355 889999998776542 11 122466665 555443
Q ss_pred H-----------HHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEee----ccCCccccccHHHHHHH
Q psy13453 645 E-----------KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATL----GTTGTCAFDNLEELGPI 709 (764)
Q Consensus 645 ~-----------kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~Vvata----GTT~~GaiDpl~eIa~i 709 (764)
. ..+...|++++.|+. ++|.+|+++|+++|++. ..+-+|+++. .++.+|.+.|+++|+++
T Consensus 131 ~~~~g~~~~~~~~~l~~~G~~~~~v~~-~~~~~d~e~l~~~i~~~----~~tklV~i~~s~gyp~nptg~v~dl~~i~~i 205 (427)
T 3hvy_A 131 HDIIGMDDSKKVGSLREYGVKYKMVDL-KDGKVDINTVKEELKKD----DSIKLIHIQRSTGYGWRKSLRIAEIAEIIKS 205 (427)
T ss_dssp HHHHTCCTTCCSCCTGGGTCEEEECCC-BTTBCCHHHHHHHHHHC----TTEEEEEEESSCCSSSSCCCCHHHHHHHHHH
T ss_pred HHHhccccchhhhHHHHcCCEEEEecC-CCCCcCHHHHHHHhhCC----CCCEEEEEECCCCCCCCccccHHHHHHHHHH
Confidence 3 334456889999998 78999999999999741 1244777777 78899999999999999
Q ss_pred HHh--cCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCC
Q psy13453 710 CQE--YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLV 756 (764)
Q Consensus 710 ~~~--~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~ 756 (764)
|++ +|+|++||.||+.+....... -. .+|.++.++||+++.
T Consensus 206 a~~~~~g~~livD~a~~~~~~~~~p~---~~---gaDiv~~S~sK~lgg 248 (427)
T 3hvy_A 206 IREVNENVIVFVDNCYGEFVEEKEPT---DV---GADIIAGSLIKNIGG 248 (427)
T ss_dssp HHHHCSSSEEEEECTTCTTTSSSCGG---GG---TCSEEEEETTSGGGT
T ss_pred HHHhCCCCEEEEECCccccccCCCCc---cc---CCeEEEECCcccccc
Confidence 999 899999999998765322111 11 369999999999986
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.15 E-value=2.2e-10 Score=125.36 Aligned_cols=166 Identities=16% Similarity=0.125 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
....++.+++++++|.+ ..+||+|||+||..++.+++.....+ +.. .++-+++.+...|
T Consensus 81 ~~~~~l~~~la~~~~~~-----------~v~~~~gg~~a~~~al~~~~~~~~~~-~~~---------g~~~vi~~~~~y~ 139 (406)
T 4adb_A 81 EPVLRLAKKLIDATFAD-----------RVFFCNSGAEANEAALKLARKFAHDR-YGS---------HKSGIVAFKNAFH 139 (406)
T ss_dssp HHHHHHHHHHHHHSSCS-----------EEEEESSHHHHHHHHHHHHHHHHHHH-TCT---------TCCEEEEETTCCC
T ss_pred HHHHHHHHHHHhhCCCC-----------eEEEeCcHHHHHHHHHHHHHHHHHhc-CCC---------CCcEEEEECCCcC
Confidence 34566778899998754 47899999999999999887643221 000 1134677788888
Q ss_pred hhHHHHHHhCCC------------ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcc-----ccccHH
Q psy13453 642 SSVEKSAIIGDV------------PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTC-----AFDNLE 704 (764)
Q Consensus 642 ~Sv~kAa~~lGl------------~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~G-----aiDpl~ 704 (764)
.+...+....|. ++..+|. .|+++|+++|++. +.+|+.+ .++.+| ..++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~------~~~v~~~-p~np~g~~~~~~~~~l~ 207 (406)
T 4adb_A 140 GRTLFTVSAGGQPAYSQDFAPLPADIRHAAY-----NDINSASALIDDS------TCAVIVE-PIQGEGGVVPASNAFLQ 207 (406)
T ss_dssp CSSHHHHHHSSCGGGTGGGCSCCSSEEEECT-----TCHHHHHTTCSTT------EEEEEEC-SEETTTTSEECCHHHHH
T ss_pred CCcHHHhhccCCccccccCCCCCCCceEeCC-----CcHHHHHHHhcCC------eEEEEEe-CCcCCCCCccCCHHHHH
Confidence 777777666552 3444443 3799999888632 4477777 666666 446899
Q ss_pred HHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 705 ELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 705 eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
+|+++|++||+|+|+|.+|+++......+.....++ ..|.+++ ||+++..+.+|++
T Consensus 208 ~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~d~~t~--sK~~~~G~r~G~~ 263 (406)
T 4adb_A 208 GLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGV-TPDLLTT--AKALGGGFPVGAL 263 (406)
T ss_dssp HHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTC-CCSEEEE--CGGGGTTSCCEEE
T ss_pred HHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCC-CCCEEEe--chhhcCCCCeEEE
Confidence 999999999999999999985422221122222233 3577765 9999854456665
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-09 Score=120.33 Aligned_cols=175 Identities=12% Similarity=-0.033 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchh
Q psy13453 564 EVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSS 643 (764)
Q Consensus 564 E~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~S 643 (764)
..++.+.++++++.+. ...+||+|||+||..++.+++.....+ +. .++-+++.....|.+
T Consensus 88 ~~~l~~~la~~~~~~~---------~~v~~~~ggtea~~~ai~~~~~~~~~~-g~----------~~~~vi~~~~~yh~~ 147 (429)
T 1s0a_A 88 AIELCRKLVAMTPQPL---------ECVFLADSGSVAVEVAMKMALQYWQAK-GE----------ARQRFLTFRNGYHGD 147 (429)
T ss_dssp HHHHHHHHHHHSCTTC---------CEEEEESSHHHHHHHHHHHHHHHHHHH-TC----------CCCEEEEETTCCCCS
T ss_pred HHHHHHHHHHhCCCCC---------CEEEEeCCHHHHHHHHHHHHHHHhccc-CC----------CCCeEEEECCCCCCC
Confidence 3445567888887644 368999999999999999876432110 00 012345555567766
Q ss_pred HHHHHHhCC-------------CceEEEecCC------CCcccHHHHHHHHHHhhhcCCCceEEEEeec-cCCcccccc-
Q psy13453 644 VEKSAIIGD-------------VPVRQLRSDD------NGVLRGDALLTAVKEDLAKGLIPCCLIATLG-TTGTCAFDN- 702 (764)
Q Consensus 644 v~kAa~~lG-------------l~v~~Vp~d~------~g~md~~~Le~~I~~~~~~G~~p~~VvataG-TT~~GaiDp- 702 (764)
..-++.+.| ..++.++++. .+.+|+++|+++|++. +..+.+|+++-. ++.+|.+-+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~vi~~p~~~n~tG~~~~~ 224 (429)
T 1s0a_A 148 TFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAH---RHEIAAVIIEPIVQGAGGMRMYH 224 (429)
T ss_dssp SHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHH---TTTEEEEEECSSEECTTTCEEBC
T ss_pred chhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhC---CCCEEEEEEeecccCCCCcccCC
Confidence 555544433 1466677642 2469999999999753 112446665555 577998766
Q ss_pred ---HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC-cCceeeC
Q psy13453 703 ---LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSAMW 764 (764)
Q Consensus 703 ---l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~l~ 764 (764)
+++|+++|++||++||+|.+|.++......+.....++ ..|.++++ |+++.+ +.+|+++
T Consensus 225 ~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~~~~~-~~d~~t~s--K~l~~G~~~iG~~~ 287 (429)
T 1s0a_A 225 PEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEI-APDILCLG--KALTGGTMTLSATL 287 (429)
T ss_dssp THHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEEEC--GGGGTSSSCCEEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhhhcCC-CCCEEEec--ccccCCCccceEEE
Confidence 99999999999999999999986321111111111233 35877765 988866 7778753
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-10 Score=127.86 Aligned_cols=145 Identities=12% Similarity=0.081 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcch
Q psy13453 563 LEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNS 642 (764)
Q Consensus 563 lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~ 642 (764)
...++.+.+++++|.+. .+++++||+||..++. . .. ++..|+++..+|.
T Consensus 56 ~~~~lr~~la~~~g~~~-----------~i~~~sGt~a~~~al~-~----~~---------------~gd~Vi~~~~~y~ 104 (393)
T 1n8p_A 56 NRENLERAVAALENAQY-----------GLAFSSGSATTATILQ-S----LP---------------QGSHAVSIGDVYG 104 (393)
T ss_dssp HHHHHHHHHHHHTTCSE-----------EEEESCHHHHHHHHHH-T----SC---------------SSCEEEEESSCCH
T ss_pred hHHHHHHHHHHHhCCCc-----------EEEECChHHHHHHHHH-H----cC---------------CCCEEEEeCCCch
Confidence 34456677888888652 4677777999888775 2 11 1124667778887
Q ss_pred hHHHH----HHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhc----C
Q psy13453 643 SVEKS----AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEY----N 714 (764)
Q Consensus 643 Sv~kA----a~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~----g 714 (764)
+.... +...|++++.+|++ | ++|+++|++. +.+|+....++.+|.+-|+++|+++|++| |
T Consensus 105 ~~~~~~~~~~~~~G~~v~~v~~~-----d-~~l~~~i~~~------t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~ 172 (393)
T 1n8p_A 105 GTHRYFTKVANAHGVETSFTNDL-----L-NDLPQLIKEN------TKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQD 172 (393)
T ss_dssp HHHHHHHHTSTTTCSCCEEESSH-----H-HHHHHHSCSS------EEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHcCcEEEEeCCC-----h-HHHHHhcccC------ceEEEEECCCCCcceecCHHHHHHHHHHhCCCCC
Confidence 65553 34568899999876 7 8888887542 45888888999999999999999999999 9
Q ss_pred CEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 715 IWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 715 lwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
+++|+|++|+.+....+ .. + .+|.++.++||+++.+
T Consensus 173 ~~livD~a~~~~~~~~~--~~----~-~~di~~~S~sK~~g~~ 208 (393)
T 1n8p_A 173 VILVVDNTFLSPYISNP--LN----F-GADIVVHSATKYINGH 208 (393)
T ss_dssp CEEEEECTTTHHHHCCG--GG----G-TCSEEEEETTTTTTCS
T ss_pred CEEEEeCCccccccCCH--HH----c-CCeEEEEECcccccCC
Confidence 99999999998754311 11 1 3699999999988844
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.4e-10 Score=128.96 Aligned_cols=196 Identities=10% Similarity=0.043 Sum_probs=121.7
Q ss_pred ccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCcccccc-C
Q psy13453 552 FSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIR-N 630 (764)
Q Consensus 552 ~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~-~ 630 (764)
..|.......++++.+.+|+.+..|++-+ ....+||+|||+++..++.+... +.. ..+. +...+.. .
T Consensus 77 ~~y~~~~g~~~lr~~ia~~l~~~~g~~~~-------~~~i~~t~G~t~al~~~~~~l~~---~gd-~~~~-~~~~~~g~~ 144 (444)
T 3if2_A 77 ANYSNPQGDSAFIDALVGFFNRHYDWNLT-------SENIALTNGSQNAFFYLFNLFGG---AFV-NEHS-QDKESKSVD 144 (444)
T ss_dssp HSCCCTTCCHHHHHHHHHHHHHHHCCCCC-------GGGEEEESSHHHHHHHHHHHSSE---EEE-CC--------CEEE
T ss_pred hccCCCCCCHHHHHHHHHHHHhhcCCCCC-------HHHEEEecCcHHHHHHHHHHHhC---CCc-cccc-ccccccccc
Confidence 34555555678999999999988876532 24689999999999888765421 100 0000 0000000 0
Q ss_pred ceEEEecCCcchhHHHHH------HhCCCceEEEecCC-CC----cccHHHHHHHHHHhhhcCCCceEEEEeeccCCccc
Q psy13453 631 KLVAYTSDQSNSSVEKSA------IIGDVPVRQLRSDD-NG----VLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCA 699 (764)
Q Consensus 631 ~~vi~~S~~aH~Sv~kAa------~~lGl~v~~Vp~d~-~g----~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Ga 699 (764)
+-++++..-+|.....++ ...|..+..+|+|+ +| .+|+++|++++++.. ..+.+|+.+..++.+|.
T Consensus 145 ~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~---~~~~~v~i~~p~nptG~ 221 (444)
T 3if2_A 145 KSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKE---GRIGAICCSRPTNPTGN 221 (444)
T ss_dssp EEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHT---TCEEEEEEESSCTTTCC
T ss_pred ceEEEeCCCCccchhhcccccchhhccCceEEecccccccCccccCCCHHHHHHHHHhcC---CCceEEEeCCCCCCCCC
Confidence 023433244454443322 22466788888875 33 799999999865421 12557777888899999
Q ss_pred ccc---HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 700 FDN---LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 700 iDp---l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
+-| +++|+++|++||+|+|+|.+|+...... .+..........+-+..++||++.....+|++
T Consensus 222 ~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~ 287 (444)
T 3if2_A 222 VLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNI-IYSDAHLNWDNNTILCFSLSKIGLPGMRTGII 287 (444)
T ss_dssp CCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCC-BCSCCCCCCCTTEEEEEESTTTTCGGGCCEEE
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEECCCCCccccc-ccccccccCCCCEEEEechhhccCCCCceEEE
Confidence 987 8889999999999999999998532111 01111111223478889999985544666654
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=5.4e-10 Score=127.42 Aligned_cols=155 Identities=15% Similarity=0.077 Sum_probs=117.2
Q ss_pred CccccCCchHHHHHHHHHHHHHHHcC-CCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCcccccc
Q psy13453 551 GFSWLSSPACTELEVLVMNWLGKALG-LPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIR 629 (764)
Q Consensus 551 ~~~~~~sp~~t~lE~~v~~~la~llG-~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~ 629 (764)
...|..+.....+.+.+.+|+.+..| ++.+ ....++|+|+++++.+++.+... . +..
T Consensus 122 ~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~-------~~~i~~t~G~~~ai~~~~~~l~~----~-----------gd~ 179 (498)
T 3ihj_A 122 LGSYSASQGVNCIREDVAAYITRRDGGVPAD-------PDNIYLTTGASDGISTILKILVS----G-----------GGK 179 (498)
T ss_dssp ------CCSCHHHHHHHHHHHHHHTTTCCCC-------GGGEEEESSHHHHHHHHHHHHCC----C-----------CGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhcCCCCCC-------cccEEEcCCHHHHHHHHHHHHcC----C-----------CCC
Confidence 35566677778899999999999885 6432 14689999999998877664311 0 111
Q ss_pred CceEEEecCCcchhHHHHHHhCCCceEEEecCC--CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccHH
Q psy13453 630 NKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLE 704 (764)
Q Consensus 630 ~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~--~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~ 704 (764)
++..|+++.-.|.++..++...|..++.+++++ ++.+|+++|+++|++... +..+-+|+.+..++.||.+ ++++
T Consensus 180 ~~d~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~-~~~~k~i~l~np~NPTG~v~s~~~l~ 258 (498)
T 3ihj_A 180 SRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKD-HCDPKVLCIINPGNPTGQVQSRKCIE 258 (498)
T ss_dssp GSEEEEEEESCCTHHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTT-TSEEEEEEEESSCTTTCCCCCHHHHH
T ss_pred CCCEEEEeCCCchhHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhc-cCCCeEEEEECCCCCCCCcCCHHHHH
Confidence 234688899999999999999999999999985 468999999999987533 2235577777889999998 6788
Q ss_pred HHHHHHHhcCCEEEEecccccccc
Q psy13453 705 ELGPICQEYNIWLHVDAAYAGSAL 728 (764)
Q Consensus 705 eIa~i~~~~glwLHVDaA~Gg~~l 728 (764)
+|+++|++||+|+++|.+|+....
T Consensus 259 ~i~~la~~~~~~li~De~y~~~~~ 282 (498)
T 3ihj_A 259 DVIHFAWEEKLFLLADEVYQDNVY 282 (498)
T ss_dssp HHHHHHHHHTCEEEEECTTTTCBC
T ss_pred HHHHHHHHcCcEEEEEcCcccccc
Confidence 899999999999999999987543
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.4e-10 Score=122.91 Aligned_cols=226 Identities=8% Similarity=-0.038 Sum_probs=152.8
Q ss_pred eeee--HHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CC
Q psy13453 20 LIYE--SFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NG 92 (764)
Q Consensus 20 ~~YS--v~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~ 92 (764)
.||| +.+++...|... +.||+++++.+|+++|+++|++. ++-+++.+.+++++|.+.|++++++ ++
T Consensus 97 ~~~~~~~~~~~~~~g~~~---~~v~~~~~~~~d~~~l~~~i~~~----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~ 169 (411)
T 3nnk_A 97 GRFGHLLCEIARRCRAEV---HTIEVPWGEVFTPDQVEDAVKRI----RPRLLLTVQGDTSTTMLQPLAELGEICRRYDA 169 (411)
T ss_dssp SHHHHHHHHHHHHTTCEE---EEEECCTTCCCCHHHHHHHHHHH----CCSEEEEESEETTTTEECCCTTHHHHHHHHTC
T ss_pred CchHHHHHHHHHHcCCeE---EEEecCCCCCCCHHHHHHHHhhC----CCeEEEEeCCCCCcceeccHHHHHHHHHHcCC
Confidence 4677 889999999876 99999999999999999999863 2235567778999999999999886 89
Q ss_pred Cceeccccc--------------------cc--cc----eeeeecCCCc--ccccc-----------------ccccccC
Q psy13453 93 PLKVGGVLR--------------------RV--YS----SCLVPRGQKS--LRTTV-----------------LFHFLFQ 127 (764)
Q Consensus 93 wlHVDa~l~--------------------~~--y~----s~ll~rd~~~--l~~~~-----------------s~~~d~~ 127 (764)
|+++|++.. ++ ++ ++++.++.-. +.... .....|.
T Consensus 170 ~li~Dea~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~ 249 (411)
T 3nnk_A 170 LFYTDATASLGGNPLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYF 249 (411)
T ss_dssp EEEEECTTTBTTBCCCTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTT
T ss_pred EEEEECCcccCCcccchhccCCcEEEecCccccCCCCceEEEEECHHHHHHHhhcccccccccccccccccCCCCccccc
Confidence 999999531 11 00 2222221100 00000 0000000
Q ss_pred C-----------cccCCCC-cccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC---ceeEEEE
Q psy13453 128 H-----------WQIPLGR-RFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS---MGLVCFR 192 (764)
Q Consensus 128 d-----------~tle~SR-r~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~---l~iV~Fr 192 (764)
+ ....++. ......+++++..+..+|+.++.++..++++++.+.|++. +++++.++. .++++|+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~ 328 (411)
T 3nnk_A 250 DLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAM-GLETFGDLKHKMNNVLGVV 328 (411)
T ss_dssp CHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGBCSSEEEEE
T ss_pred chHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeCCCcccccccEEEEE
Confidence 0 0011122 2233466788888888899999999999999999999986 888876543 5677776
Q ss_pred eeccccccccccccCccCCccHHHHHHHHHHHhc-CcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 193 LKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIAR-KVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 193 y~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~-G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
+. . +.+ ..++.++|.++ |..+..........++|++++...+++++++.+++.|+++.+++
T Consensus 329 ~~-~--------------~~~--~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~ 390 (411)
T 3nnk_A 329 IP-Q--------------GIN--GDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYL 390 (411)
T ss_dssp CC-T--------------TCC--HHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred CC-C--------------CCC--HHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHc
Confidence 52 1 111 24677888776 87554332222345899988788889999999999999987664
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.13 E-value=3.1e-10 Score=125.87 Aligned_cols=154 Identities=16% Similarity=0.092 Sum_probs=112.9
Q ss_pred CchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEe
Q psy13453 557 SPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYT 636 (764)
Q Consensus 557 sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~ 636 (764)
.|...++|+ .+++++|.+. .+++++|++|+..++. . .. ++..|++
T Consensus 66 ~p~~~~l~~----~la~~~g~~~-----------~i~~~sG~~ai~~~~~-l----~~---------------~gd~Vl~ 110 (403)
T 3cog_A 66 NPTRNCLEK----AVAALDGAKY-----------CLAFASGLAATVTITH-L----LK---------------AGDQIIC 110 (403)
T ss_dssp CHHHHHHHH----HHHHHHTCSE-----------EEEESCHHHHHHHHHT-T----SC---------------TTCEEEE
T ss_pred CchHHHHHH----HHHHHhCCCc-----------EEEECCHHHHHHHHHH-H----hC---------------CCCEEEE
Confidence 344455554 5566666542 4666777888776654 2 11 1225778
Q ss_pred cCCcchhHHHH----HHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHh
Q psy13453 637 SDQSNSSVEKS----AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQE 712 (764)
Q Consensus 637 S~~aH~Sv~kA----a~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~ 712 (764)
+..+|.+.... +...|++++.+|.+ |+++|+++|++. +-+|++...++.+|.+-|+++|+++|++
T Consensus 111 ~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~~i~~~------t~~v~~~~p~nptG~~~~l~~i~~la~~ 179 (403)
T 3cog_A 111 MDDVYGGTNRYFRQVASEFGLKISFVDCS-----KIKLLEAAITPE------TKLVWIETPTNPTQKVIDIEGCAHIVHK 179 (403)
T ss_dssp ESSCCHHHHHHHHHTGGGGTCEEEEECTT-----SHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHTS
T ss_pred eCCCcchHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcCcC------CeEEEEECCCCCCCeeeCHHHHHHHHHH
Confidence 88889875554 34578899998876 799999888643 4478888999999999999999999999
Q ss_pred cC-CEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcC--ceee
Q psy13453 713 YN-IWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD--CSAM 763 (764)
Q Consensus 713 ~g-lwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~--~g~l 763 (764)
|| +|++||.+|+.+....+ .. + .+|.+..++||+++.|.+ +|++
T Consensus 180 ~g~~~livD~~~~~~~~~~~-~~-----~-~~div~~S~sK~~~g~~~~~~G~v 226 (403)
T 3cog_A 180 HGDIILVVDNTFMSPYFQRP-LA-----L-GADISMYSATKYMNGHSDVVMGLV 226 (403)
T ss_dssp SSCCEEEEECTTTCTTTCCT-TT-----T-TCSEEEEETTTTTTCSSCCCCEEE
T ss_pred cCCCEEEEECCCcccccCCc-cc-----c-CCeEEEEcChhhccCCCCCeEEEE
Confidence 99 99999999998654222 11 1 469999999999998876 3765
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.13 E-value=1e-09 Score=119.73 Aligned_cols=183 Identities=14% Similarity=-0.005 Sum_probs=122.8
Q ss_pred cccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEE--eCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccC
Q psy13453 553 SWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGII--QSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRN 630 (764)
Q Consensus 553 ~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~Gvf--TsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~ 630 (764)
.|...+...++.+.+.+|+.+.-+.+-+ ....+| |+|||+|+..++.+++.. . +
T Consensus 64 ~y~~~~g~~~lr~~la~~~~~~~~~~~~-------~~~v~~~~~~g~~~a~~~~~~~~~~~--~---------------~ 119 (396)
T 2q7w_A 64 NYLGIDGIPEFGRCTQELLFGKGSALIN-------DKRARTAQTPGGTGALRVAADFLAKN--T---------------S 119 (396)
T ss_dssp CCCCTTCCHHHHHHHHHHHHCTTCHHHH-------TTCEEEEEESHHHHHHHHHHHHHHHH--S---------------C
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCccc-------cccEEEEecccchhhHHHHHHHHHHh--C---------------C
Confidence 3444445667777777776443221100 124566 999999998888765431 1 1
Q ss_pred ceEEEecCCcchhHHHHHHhCCCceEEEecC--CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc---cHHH
Q psy13453 631 KLVAYTSDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD---NLEE 705 (764)
Q Consensus 631 ~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d--~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD---pl~e 705 (764)
+..|++..-+|.+...++...|.+++.+|.+ +++.+|+++|++++++. .....+++.+..++.+|.+- ++++
T Consensus 120 gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~ 196 (396)
T 2q7w_A 120 VKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEA---QAGDVVLFHGCCHNPTGIDPTLEQWQT 196 (396)
T ss_dssp CCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTC---CTTCEEEEECSSCTTTCCCCCHHHHHH
T ss_pred CCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHH
Confidence 1246777888999999999999999999985 57889999999998642 11245777788899999884 5778
Q ss_pred HHHHHHhcCCEEEEecccccccccc--c--hhhhhhcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 706 LGPICQEYNIWLHVDAAYAGSALLL--P--EYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 706 Ia~i~~~~glwLHVDaA~Gg~~l~~--~--~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
|+++|++||+++++|.+|+++..-. + .... +.....-+-+..++||.++.| +.+|.+
T Consensus 197 l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~~~~G~riG~~ 258 (396)
T 2q7w_A 197 LAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRA-FAAMHKELIVASSYSXNFGLYNERVGAC 258 (396)
T ss_dssp HHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHH-HHHHCSCEEEEEECTTTTTCGGGCCEEE
T ss_pred HHHHHHHCCCEEEEecccccccCCccchhHHHHH-HHhcCCcEEEEEeccccccccccccceE
Confidence 9999999999999999998754311 0 1111 111111246688999988743 224554
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-09 Score=120.90 Aligned_cols=196 Identities=11% Similarity=-0.057 Sum_probs=128.9
Q ss_pred HHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhcc
Q psy13453 539 VGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQS 618 (764)
Q Consensus 539 lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~ 618 (764)
+.+.+....+.....|.......++.+.+.+|+.+..+.+. ....++|+|||+++..++.+.. .
T Consensus 61 v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~--------~~~i~~t~g~~~al~~~~~~l~----~---- 124 (418)
T 3rq1_A 61 VKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEG--------HIRSIATAGGTGGIHHLIHNYT----E---- 124 (418)
T ss_dssp HHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSS--------EEEEEEESHHHHHHHHHHHHHS----C----
T ss_pred HHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhcccCccc--------cccEEECCchHHHHHHHHHHhc----C----
Confidence 34444443332333444444567888888888877665321 1257899999999988776431 1
Q ss_pred CCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecC-CCCcccHHHHHHHHHHhhhcCCCceEEEEeec-cCC
Q psy13453 619 KNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLIATLG-TTG 696 (764)
Q Consensus 619 ~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d-~~g~md~~~Le~~I~~~~~~G~~p~~VvataG-TT~ 696 (764)
+...|+++.-+|.+...++...|.+++.+|++ +++.+|+++|++++++....+ ...+|+.+.. ++.
T Consensus 125 -----------~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~-~~~~vi~~~p~~NP 192 (418)
T 3rq1_A 125 -----------PGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQ-TNVVVIFNTPGNNP 192 (418)
T ss_dssp -----------TTCEEEEESSCCTHHHHHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHHC-SEEEEEEECSSCTT
T ss_pred -----------CCCEEEECCCCchhHHHHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhccC-CCEEEEEeCCCCCC
Confidence 12257788889999999999999999999984 567999999999998642211 2335666666 899
Q ss_pred ccccccHHHHH---HHHH------hcCCEEEEeccccccccccchhh---hhhcCCCccc---EEEEcCCccCCCC-cCc
Q psy13453 697 TCAFDNLEELG---PICQ------EYNIWLHVDAAYAGSALLLPEYA---HLKRGLEYVD---SFDFNTHKWLLVN-FDC 760 (764)
Q Consensus 697 ~GaiDpl~eIa---~i~~------~~glwLHVDaA~Gg~~l~~~~~r---~~l~gie~aD---Sit~d~HK~l~~P-~~~ 760 (764)
+|.+-+.+++. ++|+ +||+|+++|.+|.++..-..... ....++ .-| -+..++||.++.| ..+
T Consensus 193 tG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~sK~~~~~G~r~ 271 (418)
T 3rq1_A 193 TGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHL-PKEILTCVCYSLSKGFTMYGQRV 271 (418)
T ss_dssp TCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTC-CTTEEEEEEEESTTTTTCCSSCC
T ss_pred CCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhc-CCCceEEEEEeCCCCCcCcCCcc
Confidence 99997765555 5555 89999999999976542211111 122222 113 4456999988744 334
Q ss_pred eee
Q psy13453 761 SAM 763 (764)
Q Consensus 761 g~l 763 (764)
|.+
T Consensus 272 G~~ 274 (418)
T 3rq1_A 272 GAM 274 (418)
T ss_dssp EEE
T ss_pred eEE
Confidence 543
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=7.4e-10 Score=122.93 Aligned_cols=150 Identities=13% Similarity=0.073 Sum_probs=110.1
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
..|...++|+ .++++.|.+ ..+++++|++|+..++. ... ++..|+
T Consensus 65 ~~p~~~~l~~----~la~l~g~~-----------~~~~~~sG~~Ai~~~~~-----l~~---------------~gd~Vi 109 (400)
T 3nmy_A 65 HNPTRFAYER----CVAALEGGT-----------RAFAFASGMAATSTVME-----LLD---------------AGSHVV 109 (400)
T ss_dssp CCHHHHHHHH----HHHHHHTCS-----------EEEEESSHHHHHHHHHT-----TSC---------------TTCEEE
T ss_pred CCHHHHHHHH----HHHHHhCCC-----------CEEEecCHHHHHHHHHH-----HcC---------------CCCEEE
Confidence 3455555555 567777764 35788888988765321 111 122577
Q ss_pred ecCCcchhHHHHHHh-----CCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHH
Q psy13453 636 TSDQSNSSVEKSAII-----GDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPIC 710 (764)
Q Consensus 636 ~S~~aH~Sv~kAa~~-----lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~ 710 (764)
++...|.+....+.. .|+.++.++.+ |+++|+++|++. +.+|++...++.+|.+.|+++|+++|
T Consensus 110 ~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~------~~~v~~e~~~np~G~~~~l~~i~~la 178 (400)
T 3nmy_A 110 AMDDLYGGTFRLFERVRRRTAGLDFSFVDLT-----DPAAFKAAIRAD------TKMVWIETPTNPMLKLVDIAAIAVIA 178 (400)
T ss_dssp EESSCCHHHHHHHHHTHHHHHCCEEEEECTT-----SHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred EeCCCchHHHHHHHHhhHhhcCeEEEEECCC-----CHHHHHHHhccC------CCEEEEECCCCCCCeeecHHHHHHHH
Confidence 888888866665443 48888888875 799999998653 45888888999999999999999999
Q ss_pred HhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCc
Q psy13453 711 QEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNF 758 (764)
Q Consensus 711 ~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~ 758 (764)
++||++++||.+|+.+....+. . . .+|.++.++||+++.|.
T Consensus 179 ~~~g~~livDe~~~~~~~~~~~-~---~---g~div~~S~sK~l~g~g 219 (400)
T 3nmy_A 179 RKHGLLTVVDNTFASPMLQRPL-S---L---GADLVVHSATKYLNGHS 219 (400)
T ss_dssp HHTTCEEEEECTTTHHHHCCGG-G---G---TCSEEEEETTTTTTCSS
T ss_pred HHcCCEEEEECCCcccccCChh-h---c---CCcEEEecCccccCCCC
Confidence 9999999999999865443321 1 1 36999999999999873
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=5.8e-10 Score=120.67 Aligned_cols=161 Identities=12% Similarity=0.055 Sum_probs=111.2
Q ss_pred HHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHH
Q psy13453 566 LVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVE 645 (764)
Q Consensus 566 ~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~ 645 (764)
++.+.+++++|.+.+ ..+||+|+|+++..++.+. +. ..|++..-+|.+..
T Consensus 63 ~l~~~la~~~~~~~~---------~v~~~~g~~~al~~~~~~~-----~g----------------d~vl~~~p~y~~~~ 112 (364)
T 1lc5_A 63 HLHQALARHHQVPAS---------WILAGNGETESIFTVASGL-----KP----------------RRAMIVTPGFAEYG 112 (364)
T ss_dssp HHHHHHHHHHTSCGG---------GEEEESSHHHHHHHHHHHH-----CC----------------SEEEEEESCCTHHH
T ss_pred HHHHHHHHHHCcCHH---------HEEECCCHHHHHHHHHHHc-----CC----------------CeEEEeCCCcHHHH
Confidence 445566666677643 5789999999998887755 11 13667778899999
Q ss_pred HHHHhCCCceEEEecCCCCcccH-HHHHHHHHHhhhcCCCceEEEEeeccCCcccccc---HHHHHHHHHhcCCEEEEec
Q psy13453 646 KSAIIGDVPVRQLRSDDNGVLRG-DALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN---LEELGPICQEYNIWLHVDA 721 (764)
Q Consensus 646 kAa~~lGl~v~~Vp~d~~g~md~-~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp---l~eIa~i~~~~glwLHVDa 721 (764)
.++...|.+++.+|.+.+..+++ +++.+.+. ..+-+|+.+..++.+|.+-| +++|+++|++||+|+++|.
T Consensus 113 ~~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~------~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De 186 (364)
T 1lc5_A 113 RALAQSGCEIRRWSLREADGWQLTDAILEALT------PDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDE 186 (364)
T ss_dssp HHHHHTTCEEEEEECCGGGTTCCCTTHHHHCC------TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHcCCeEEEEeCCcccccchhHHHHHhcc------CCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEEC
Confidence 99999999999999875323443 43333321 12446677778889999877 9999999999999999999
Q ss_pred cccccccccchhhhhhcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 722 AYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 722 A~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
+|+.+..-.......+ +....|-+..++||+++.| +.+|++
T Consensus 187 ~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~G~r~G~~ 228 (364)
T 1lc5_A 187 AFIDFIPHETGFIPAL-KDNPHIWVLRSLTKFYAIPGLRLGYL 228 (364)
T ss_dssp TTGGGSTTCCCSGGGC-TTCTTEEEEEESTTTTTCTTTCCEEE
T ss_pred cChhhccCccchhhHh-ccCCCEEEEEECchhhcCCccceEEE
Confidence 9987543111111111 1123477889999999755 345665
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.10 E-value=5e-10 Score=120.98 Aligned_cols=157 Identities=13% Similarity=-0.034 Sum_probs=112.2
Q ss_pred HHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHH
Q psy13453 566 LVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVE 645 (764)
Q Consensus 566 ~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~ 645 (764)
++.+++++++|.+.+ ..+||+|||+++..++.+.. . +...|++..-+|.+..
T Consensus 69 ~lr~~la~~~g~~~~---------~i~~t~g~~~al~~~~~~l~----~---------------~gd~Vl~~~p~~~~~~ 120 (360)
T 3hdo_A 69 KLREVAGELYGFDPS---------WIIMANGSDEVLNNLIRAFA----A---------------EGEEIGYVHPSYSYYG 120 (360)
T ss_dssp HHHHHHHHHHTCCGG---------GEEEESSHHHHHHHHHHHHC----C---------------TTCEEEEESSSCTHHH
T ss_pred HHHHHHHHHhCcCcc---------eEEEcCCHHHHHHHHHHHHh----C---------------CCCEEEEcCCChHHHH
Confidence 456677777786553 68999999999988876431 1 1124778889999999
Q ss_pred HHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccc
Q psy13453 646 KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAG 725 (764)
Q Consensus 646 kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg 725 (764)
.++...|.+++.+|.++++.+ ++|++.+ .+-+|+.+..++.+|.+-|+++|.++|+++|+|+++|.+|+.
T Consensus 121 ~~~~~~g~~~~~v~~~~~~~~--~~l~~~~--------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~ 190 (360)
T 3hdo_A 121 TLAEVQGARVRTFGLTGDFRI--AGFPERY--------EGKVFFLTTPNAPLGPSFPLEYIDELARRCAGMLVLDETYAE 190 (360)
T ss_dssp HHHHHHTCEEEEECBCTTSSB--TTCCSSB--------CSSEEEEESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGG
T ss_pred HHHHHCCCEEEEeeCCCCCCH--HHHHhhc--------CCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHh
Confidence 999999999999999887777 4433221 133777788899999999999999999999999999999986
Q ss_pred cccccchhhhhhcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 726 SALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 726 ~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
+.-- ........ ...+-+..++||+++.| ..+|++
T Consensus 191 ~~~~--~~~~~~~~-~~~~i~~~s~sK~~g~~G~r~G~~ 226 (360)
T 3hdo_A 191 FAES--NALELVRR-HENVVVTRTLSKSYSLAGMRIGLA 226 (360)
T ss_dssp GSSC--CCTHHHHH-CSSEEEEEESTTTTSCTTSCCEEE
T ss_pred hCCc--chhHHhcc-CCCEEEEecchHhhcCCccceeeE
Confidence 3110 11111111 12246677999998744 455654
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.4e-09 Score=112.74 Aligned_cols=157 Identities=13% Similarity=0.035 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchh
Q psy13453 564 EVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSS 643 (764)
Q Consensus 564 E~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~S 643 (764)
..++.+.+++++|.+++ ..+||+|+|+++..++.+. + +..|+++.-+|.+
T Consensus 53 ~~~lr~~la~~~~~~~~---------~i~~t~G~~~~l~~~~~~~-----~----------------gd~vl~~~p~~~~ 102 (337)
T 3p1t_A 53 EPRVMRKLAEHFSCPED---------NLMLVRGIDECFDRISAEF-----S----------------SMRFVTAWPGFDG 102 (337)
T ss_dssp HHHHHHHHHHHHTSCGG---------GEEEESHHHHHHHHHHHHS-----T----------------TSEEEEESSSCSH
T ss_pred hHHHHHHHHHHhCcCHH---------HEEEeCCHHHHHHHHHHhc-----C----------------CCeEEEeCCCcHH
Confidence 34566677788887653 6799999999987766543 1 1247788899999
Q ss_pred HHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccc
Q psy13453 644 VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAY 723 (764)
Q Consensus 644 v~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~ 723 (764)
...++...|++++.+|.++++.+|+++|+++. .+.+|+.+..++.+|.+-|+++|.++|+++++ +++|.||
T Consensus 103 ~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~--------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~ 173 (337)
T 3p1t_A 103 YRARIAVSGLRHFEIGLTDDLLLDPNDLAQVS--------RDDCVVLANPSNPTGQALSAGELDQLRQRAGK-LLIDETY 173 (337)
T ss_dssp HHHHHTTSCCEEEEECBCTTSSBCHHHHTTCC--------TTEEEEEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTT
T ss_pred HHHHHHHcCCEEEEecCCCCCCCCHHHHHhhc--------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCC
Confidence 99999999999999999988999999998751 24588888899999999999999999999997 5669999
Q ss_pred cccccccchhhhhhcCCCcccEEEEcCCccCC-CCcCceee
Q psy13453 724 AGSALLLPEYAHLKRGLEYVDSFDFNTHKWLL-VNFDCSAM 763 (764)
Q Consensus 724 Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~-~P~~~g~l 763 (764)
+.+....+ ...+....+-+..++||+++ ....+|++
T Consensus 174 ~~~~~~~~----~~~~~~~~~i~~~S~sK~~g~~G~r~G~~ 210 (337)
T 3p1t_A 174 VDYSSFRA----RGLAYGENELVFRSFSKSYGLAGLRLGAL 210 (337)
T ss_dssp GGGSSCSS----SCCCCBTTEEEEEESSSTTCCTTTCCEEE
T ss_pred hhhccccc----cccccCCCEEEEeeCchhccCcchheEEE
Confidence 86322111 11122344778899999997 44556654
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=9e-10 Score=123.69 Aligned_cols=223 Identities=11% Similarity=0.058 Sum_probs=153.6
Q ss_pred eeHHHHHhhcCCCCCC--eEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCc
Q psy13453 22 YESFKATHSLSGTPDQ--VRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPL 94 (764)
Q Consensus 22 YSv~KAa~~LGl~~~~--v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wl 94 (764)
|.+.++++..|+.... +..+|.++++.+|+++|+++|++... ++-+++-+.++.++|.+.|+++|.+ ++++
T Consensus 170 ~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~--~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~v 247 (465)
T 3e9k_A 170 YAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILEVIEKEGD--SIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYV 247 (465)
T ss_dssp HHHHHHHHHTTCCHHHHEEEECCCTTCSSCCHHHHHHHHHHHGG--GEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHcCCcceeeeEEEecCCCCCccCHHHHHHHHHhcCC--CeEEEEEeCcccCcceeecHHHHHHHHHHcCCEE
Confidence 5577788999988633 45668888999999999999986421 1223467888999999999999886 8999
Q ss_pred eecccc--------------------cccc------c-eeeeecCCC--cccccccc---c-----cccC-Cc-------
Q psy13453 95 KVGGVL--------------------RRVY------S-SCLVPRGQK--SLRTTVLF---H-----FLFQ-HW------- 129 (764)
Q Consensus 95 HVDa~l--------------------~~~y------~-s~ll~rd~~--~l~~~~s~---~-----~d~~-d~------- 129 (764)
++|++. ++++ + ++++.+.+. .+...+.. + +.+. .+
T Consensus 248 i~D~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 327 (465)
T 3e9k_A 248 GFDLAHAVGNVELYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVC 327 (465)
T ss_dssp EEECTTTTTTSCCCHHHHTCCEEEECSSSTTCCCTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGG
T ss_pred EEEhhhhcCCcCCchhhcCCCEEEECcccccccCCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChH
Confidence 999742 1121 1 233333211 01000000 0 0000 01
Q ss_pred ccCCCC--cccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcC----------CCeEEeCCCC----ceeEEEEe
Q psy13453 130 QIPLGR--RFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQD----------DRFELVCPPS----MGLVCFRL 193 (764)
Q Consensus 130 tle~SR--r~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~----------p~~ell~~P~----l~iV~Fry 193 (764)
.++.+- -...+.+++++..+...|+.++.++..++++++.+.|++. ++++++.+.+ .++++|++
T Consensus 328 ~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~ 407 (465)
T 3e9k_A 328 GFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITF 407 (465)
T ss_dssp GGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEE
T ss_pred HhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEe
Confidence 111111 2235678999999988899999999999999999999985 8999987653 67888976
Q ss_pred eccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 194 KVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 194 ~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
.. .. .++.++|.++|.+.. ..++.++|+++++..++.++++.+++.|+++.++
T Consensus 408 ~~---------------~~----~~l~~~L~~~Gi~v~----~~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~ 460 (465)
T 3e9k_A 408 SV---------------PN----KDVFQELEKRGVVCD----KRNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDS 460 (465)
T ss_dssp CC---------------TT----CCHHHHHHTTTEECE----EETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC
T ss_pred cC---------------CH----HHHHHHHHHCCEEEe----cCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHh
Confidence 31 11 257788888997543 4456789999889999999999999999887643
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.9e-09 Score=115.89 Aligned_cols=223 Identities=9% Similarity=-0.050 Sum_probs=144.1
Q ss_pred eeeeHHHHHhhc---CCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----C
Q psy13453 20 LIYESFKATHSL---SGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----N 91 (764)
Q Consensus 20 ~~YSv~KAa~~L---Gl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~ 91 (764)
.|+|+..++.++ |... +.||+++++.+|+++|+++|+++ +-+++.+.+++++|.+.|++++.+ +
T Consensus 97 ~~~~~~~~~~~~~~~g~~~---~~v~~~~~~~~d~~~l~~~i~~~-----~~~v~~~~~~nptG~~~~~~~i~~l~~~~~ 168 (382)
T 4hvk_A 97 EHMSVINPAKFLQKQGFEV---EYIPVGKYGEVDVSFIDQKLRDD-----TILVSVQHANNEIGTIQPVEEISEVLAGKA 168 (382)
T ss_dssp CCHHHHHHHHHHHHTTCEE---EEECBCTTSCBCHHHHHHHCCTT-----EEEEECCSBCTTTCBBCCHHHHHHHHSSSS
T ss_pred CcHHHHHHHHHHHhcCCEE---EEeccCCCCCcCHHHHHHHhccC-----ceEEEEECCCCCceeeCCHHHHHHHHHHcC
Confidence 577888877775 7665 99999999999999999999753 224468889999999999999876 8
Q ss_pred CCceeccccccc---------------------c----ceeeeecCCCccccccccccccCCccc-CCCCc-ccHHHHHH
Q psy13453 92 GPLKVGGVLRRV---------------------Y----SSCLVPRGQKSLRTTVLFHFLFQHWQI-PLGRR-FRALKLWM 144 (764)
Q Consensus 92 ~wlHVDa~l~~~---------------------y----~s~ll~rd~~~l~~~~s~~~d~~d~tl-e~SRr-~~ALklWa 144 (764)
+ +++|++.... + .++++.++...+...+.. ... .... .++-. .....+.+
T Consensus 169 ~-li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~ 245 (382)
T 4hvk_A 169 A-LHIDATASVGQIEVDVEKIGADMLTISSNDIYGPKGVGALWIRKEAKLQPVILG-GGQ-ENGLRSGSENVPSIVGFGK 245 (382)
T ss_dssp E-EEEECTTTBTTBCCCHHHHTCSEEEEESGGGTSCTTCEEEEEETTCCCCCSSCS-SCT-GGGTSCSCCCHHHHHHHHH
T ss_pred E-EEEEhHHhcCCCCCCchhcCCCEEEEeHHHhcCCCceEEEEEcCccCcCccccc-CCC-cCccccCCcCHHHHHHHHH
Confidence 8 9999953111 0 012222221111100000 000 0000 01111 11223334
Q ss_pred HHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC---ceeEEEEeeccccccccccccCccCCccHHHHHHHH
Q psy13453 145 TLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS---MGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYD 221 (764)
Q Consensus 145 tL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~---l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~ 221 (764)
++. +..+++.++.++..++++++.+.|++.|++++..++. .++++|++.. .+ ..++.+
T Consensus 246 al~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~--~~~~~~ 306 (382)
T 4hvk_A 246 AAE-ITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSY----------------IE--GESIVL 306 (382)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETT----------------CC--HHHHHH
T ss_pred HHH-HHHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEECC----------------CC--HHHHHH
Confidence 444 4467899999999999999999999999999887654 3578887631 11 146778
Q ss_pred HHHhcCcEEEEeceeC-------------C------eeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHcc
Q psy13453 222 RIIARKVIYIVKGSFQ-------------D------RLFMRFAICSSQTEESDVQLGWNEIRTATEEVLRG 273 (764)
Q Consensus 222 ~L~~~G~~~vs~t~l~-------------g------~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~~ 273 (764)
.|.++|..+....... + ..++|+++. +.+++++++.+++.|+++.+++.+.
T Consensus 307 ~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~-~~~t~e~i~~~~~~l~~~~~~~~~~ 376 (382)
T 4hvk_A 307 SLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLG-RYNTDEDVDRLLEVLPGVIERLRSM 376 (382)
T ss_dssp HHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECC-TTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcC-CCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 8888887433211000 0 468999765 4567899999999999998877653
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.08 E-value=8.9e-09 Score=115.35 Aligned_cols=228 Identities=9% Similarity=-0.068 Sum_probs=138.5
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCCccccccCCCCChHHHHHHHHHHhh---cccCccccCCchHHHHHHHHHHHHHHHcCC
Q psy13453 501 DWRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAF---GLIGFSWLSSPACTELEVLVMNWLGKALGL 577 (764)
Q Consensus 501 ~~~~il~~l~~~i~~~~~~~~~P~~~~~~~~~~~~~~~lad~l~~~l---N~n~~~~~~sp~~t~lE~~v~~~la~llG~ 577 (764)
..-.+.+.++..-.+...+..-..|+++-..+....++ .+.+.... +.....|.......++.+.+.+|+ +|.
T Consensus 35 ~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~av-~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l---~g~ 110 (448)
T 3meb_A 35 AILNLTVLYNADTNPKKVNLGVGAYRDESGKPWILPAV-KEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLM---FGK 110 (448)
T ss_dssp TTHHHHHHHHHCCCTTCEEESSCCCCCTTSCCCCCHHH-HHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHH---HCT
T ss_pred hHHHHHHHHHhCCCCCeEEeecccccCCCCCEechHHH-HHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHh---cCC
Confidence 34555556655433333344445555655444444433 33322222 112223333334445555555554 365
Q ss_pred CccccCCCCCCCcEEE--eCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHH----hC
Q psy13453 578 PEEFLNCSPGPGGGII--QSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAI----IG 651 (764)
Q Consensus 578 p~~~~~~~~~~~~Gvf--TsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~----~l 651 (764)
+.... .....+| |+|||+|+..+....... .+ ...|++++-+|.+....+. ..
T Consensus 111 ~~~~~----~~~~i~~~~t~ggt~al~l~~~~~~~~-~~----------------gd~Vlv~~p~~~~~~~~~~~~~~~~ 169 (448)
T 3meb_A 111 DSKAA----QEGRIASCQSLSGTGSLHIGFEFLHLW-MP----------------KAEFYMPSTTWPNHYGIYDKVFNKL 169 (448)
T ss_dssp TCHHH----HTTCEEEEEESHHHHHHHHHHHHHHHH-CT----------------TCCEEEESSCCTHHHHHHHHHHCTT
T ss_pred Ccccc----CcCcEEEEECCcHHHHHHHHHHHHHHh-CC----------------CCEEEECCCCCHhHHHHHHhhHHhC
Confidence 41000 0135778 999999987754332211 11 1247888899999999999 89
Q ss_pred CCceEEEec-CCC--CcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc---cHHHHHHHHHhcCCEEEEeccccc
Q psy13453 652 DVPVRQLRS-DDN--GVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD---NLEELGPICQEYNIWLHVDAAYAG 725 (764)
Q Consensus 652 Gl~v~~Vp~-d~~--g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD---pl~eIa~i~~~~glwLHVDaA~Gg 725 (764)
|.+++.+|. |++ +.+|+++|+++|++. .....+|+.+..++.+|.+- ++++|+++|++||+++++|.||++
T Consensus 170 G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~---~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~ 246 (448)
T 3meb_A 170 KVPYKEYTYLRKDGELEIDFSNTKKDIQSA---PEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQG 246 (448)
T ss_dssp TSCCEEECCBCTTSCSSBCHHHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTT
T ss_pred CCeEEEEeccccccCCCcCHHHHHHHHHhC---CCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEeccccc
Confidence 999999998 664 899999999999762 12356777788899999885 466699999999999999999987
Q ss_pred ccccc-----chhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 726 SALLL-----PEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 726 ~~l~~-----~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
+..-. ...+.... ...-.-++.++||.++.|
T Consensus 247 ~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~g~~ 282 (448)
T 3meb_A 247 FATGSFEADAFAVRMFVD-AGVEVLVAQSFSKNFGLY 282 (448)
T ss_dssp TSSSCHHHHTHHHHHHHH-TTCCEEEEEECTTTSCCG
T ss_pred ccCCCcccCchhHHHHhh-cCCcEEEEecccccCCCc
Confidence 54321 01111111 111134588999988744
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.08 E-value=7.7e-10 Score=121.15 Aligned_cols=224 Identities=10% Similarity=0.026 Sum_probs=152.7
Q ss_pred eeee--HHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CC
Q psy13453 20 LIYE--SFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NG 92 (764)
Q Consensus 20 ~~YS--v~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~ 92 (764)
.||| +.++++..|... +.||++.++.+|+++|+++|++. ++-+++.+.+++++|.+.|++++++ ++
T Consensus 95 ~~~~~~~~~~~~~~g~~~---~~v~~~~~~~~d~~~l~~~i~~~----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~ 167 (416)
T 3isl_A 95 GRFGYLLTEIAERYGANV---HMLECEWGTVFDPEDIIREIKKV----KPKIVAMVHGETSTGRIHPLKAIGEACRTEDA 167 (416)
T ss_dssp SHHHHHHHHHHHHTTCEE---EEEECCTTCCCCHHHHHHHHHHH----CCSEEEEESEETTTTEECCCHHHHHHHHHTTC
T ss_pred CcccHHHHHHHHhcCCee---EEEecCCCCCCCHHHHHHHHhhC----CCcEEEEEccCCCCceecCHHHHHHHHHHcCC
Confidence 4677 888999999876 99999999999999999999853 1235567788999999999999886 89
Q ss_pred Cceeccccc--------------------cc--cc----eeeeecCCCccccccc-----------------------cc
Q psy13453 93 PLKVGGVLR--------------------RV--YS----SCLVPRGQKSLRTTVL-----------------------FH 123 (764)
Q Consensus 93 wlHVDa~l~--------------------~~--y~----s~ll~rd~~~l~~~~s-----------------------~~ 123 (764)
|+++|+... ++ ++ ++++.++. .... +. ..
T Consensus 168 ~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~l~g~~g~g~~~~~~~-~~~~-~~~~~~~~~Gw~~~~~~~~~~gg~~~~ 245 (416)
T 3isl_A 168 LFIVDAVATIGGCEVKVDEWKIDAAIGGTQKCLSVPSGMAPITYNER-VADV-IAARKKVERGIATQADRAALSGNRPIT 245 (416)
T ss_dssp EEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCCCSSEEEEEECHH-HHHH-HHTC------------------CCCCS
T ss_pred EEEEECCccccCCCcchhhcCCCEEEecCccccCCCCCeEEEEECHH-HHHH-hhccccccccccccccchhccCCCCCC
Confidence 999998531 11 00 22222211 0000 00 00
Q ss_pred ccc----------CCccc-CCCC-cccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC---cee
Q psy13453 124 FLF----------QHWQI-PLGR-RFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS---MGL 188 (764)
Q Consensus 124 ~d~----------~d~tl-e~SR-r~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~---l~i 188 (764)
..+ ....+ .++. ......+++++..+...|+.++.++..++++++.+.|++. +++++.++. .++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~ 324 (416)
T 3isl_A 246 SNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAM-GLRLFGDDSCKMPVV 324 (416)
T ss_dssp CSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGBCTTE
T ss_pred ccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeccCccccCCcE
Confidence 000 01111 1222 2233466788888888889999999999999999999995 888876654 467
Q ss_pred EEEEeeccccccccccccCccCCccHHHHHHHHHHHhc-CcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13453 189 VCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIAR-KVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 189 V~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~-G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~ 267 (764)
++|++. . ..+ ..++.++|.++ |........-.+..++|+++....|++++++.+++.|+++.
T Consensus 325 ~~~~~~-~--------------~~~--~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~ 387 (416)
T 3isl_A 325 TCVEIP-G--------------GID--GESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVL 387 (416)
T ss_dssp EEEECC-T--------------TCC--HHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred EEEeCC-C--------------CCC--HHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcHHHHHHHHHHHHHHH
Confidence 788753 1 111 24678888776 86443222222356899998777888888999999999987
Q ss_pred HHH
Q psy13453 268 EEV 270 (764)
Q Consensus 268 ~~i 270 (764)
+++
T Consensus 388 ~~~ 390 (416)
T 3isl_A 388 LRH 390 (416)
T ss_dssp HHT
T ss_pred HHc
Confidence 664
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=5.1e-10 Score=122.58 Aligned_cols=156 Identities=17% Similarity=0.068 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCC-
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQ- 639 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~- 639 (764)
..+|+.+.+++++++|.++. ...++|+|||+++..++.+. +. + .|+++..
T Consensus 57 ~~~~~~~~~~~a~~~g~~~~--------~~~~~~~ggt~a~~~~~~~~-----~g---------------d-~Vl~~~~~ 107 (374)
T 2aeu_A 57 SYFAEKVNEYGLKHLGGDEN--------DKCVGFNRTSSAILATILAL-----KP---------------K-KVIHYLPE 107 (374)
T ss_dssp HHHHHHHHHHHHHHHTCCTT--------EEEEEESSHHHHHHHHHHHH-----CC---------------S-EEEEECSS
T ss_pred hHHHHHHHHHHHHHhCCCCc--------ceEEEEcChHHHHHHHHHhC-----CC---------------C-EEEEecCC
Confidence 35667788888899988311 24689999999998888754 21 1 3455555
Q ss_pred --cchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceE-EEEeeccCCcc-ccccHHHHHHHHHhcCC
Q psy13453 640 --SNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCC-LIATLGTTGTC-AFDNLEELGPICQEYNI 715 (764)
Q Consensus 640 --aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~-VvataGTT~~G-aiDpl~eIa~i~~~~gl 715 (764)
.|+++.+++...|..++.+ +|+++|+++ .+ .+-+ |+.+..++.+| ...++++|+++|++||+
T Consensus 108 y~~~~~~~~~~~~~g~~~~~v-------~d~~~l~~~-~~------~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~ 173 (374)
T 2aeu_A 108 LPGHPSIERSCKIVNAKYFES-------DKVGEILNK-ID------KDTLVIITGSTMDLKVIELENFKKVINTAKNKEA 173 (374)
T ss_dssp SSCCTHHHHHHHHTTCEEEEE-------SCHHHHHTT-CC------TTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTC
T ss_pred CCccHHHHHHHHHcCcEEEEe-------CCHHHHHhc-CC------CccEEEEEccCCCCCCCCcccHHHHHHHHHHcCC
Confidence 5777767788889988777 378888776 21 2446 77777888899 89999999999999999
Q ss_pred EEEEeccccccccccchhhh-hhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 716 WLHVDAAYAGSALLLPEYAH-LKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 716 wLHVDaA~Gg~~l~~~~~r~-~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
++|+|.+|+.+.. .+.... .+. + .+|.++.++||+++.| ..|++
T Consensus 174 ~li~De~~~~~~~-~~~~~~~~~~-~-~~di~~~S~sK~l~g~-~~G~~ 218 (374)
T 2aeu_A 174 IVFVDDASGARVR-LLFNQPPALK-L-GADLVVTSTDKLMEGP-RGGLL 218 (374)
T ss_dssp CEEEECTTHHHHH-HHTTCCCHHH-H-TCSEEEEETTSSSSSC-SCEEE
T ss_pred EEEEECCcccccc-cccccCCccc-c-CCcEEEecCcccccCc-ceEEE
Confidence 9999999987531 011110 111 1 3489999999998754 77765
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=7.3e-10 Score=120.03 Aligned_cols=160 Identities=13% Similarity=0.001 Sum_probs=114.2
Q ss_pred HHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCc-eEEEecCCcchhH
Q psy13453 566 LVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK-LVAYTSDQSNSSV 644 (764)
Q Consensus 566 ~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~-~vi~~S~~aH~Sv 644 (764)
++.+.+++++|.+++ ..++|+|+|+++..++.+... ++ ..|+++.-+|.+.
T Consensus 62 ~lr~~la~~~~~~~~---------~v~~~~G~~~ai~~~~~~~~~-------------------~g~d~Vl~~~p~~~~~ 113 (356)
T 1fg7_A 62 AVIENYAQYAGVKPE---------QVLVSRGADEGIELLIRAFCE-------------------PGKDAILYCPPTYGMY 113 (356)
T ss_dssp HHHHHHHHHHTSCGG---------GEEEESHHHHHHHHHHHHHCC-------------------TTTCEEEECSSSCTHH
T ss_pred HHHHHHHHHhCCChH---------HEEEcCCHHHHHHHHHHHHhC-------------------CCCCEEEEeCCChHHH
Confidence 455566777787653 578999999998877765421 11 2577888899999
Q ss_pred HHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHH---HHHHHhcCCEEEEec
Q psy13453 645 EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEEL---GPICQEYNIWLHVDA 721 (764)
Q Consensus 645 ~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eI---a~i~~~~glwLHVDa 721 (764)
..++...|.+++.+|.++++.+|+++|+++++ . +-+|+.+..++.+|.+-|.++| +++|+ +|+++++|.
T Consensus 114 ~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-~------~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De 185 (356)
T 1fg7_A 114 SVSAETIGVECRTVPTLDNWQLDLQGISDKLD-G------VKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADE 185 (356)
T ss_dssp HHHHHHHTCEEEECCCCTTSCCCHHHHHTSCT-T------EEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEEC
T ss_pred HHHHHHcCCEEEEeeCCCCCCCCHHHHHHHhc-C------CCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEc
Confidence 99999999999999998888999999998875 2 3477778889999999665555 55566 999999999
Q ss_pred cccccccccchhhhhhcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 722 AYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 722 A~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
+|+.+.. .......... ...+-+..++||+++.| ..+|.+
T Consensus 186 ~~~~~~~-~~~~~~~~~~-~~~~i~~~s~sK~~g~~G~r~G~~ 226 (356)
T 1fg7_A 186 AYIEFCP-QASLAGWLAE-YPHLAILRTLSKAFALAGLRCGFT 226 (356)
T ss_dssp TTGGGSG-GGCSGGGTTT-CTTEEEEEESSSTTCCGGGCCEEE
T ss_pred cchhhcC-CCcHHHHHhh-CCCEEEEecchHhhcCchhhhEEE
Confidence 9987541 1111111111 12367788999998743 235654
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=9.1e-10 Score=122.31 Aligned_cols=167 Identities=16% Similarity=0.127 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
....++.+++++++|.+ ..+||+|||+||..++.+++.....+ +..+ ++-+|+.+...|
T Consensus 99 ~~~~~l~~~la~~~g~~-----------~v~~~~ggteA~~~al~~~~~~~~~~-~~~g---------~~~vi~~~~~yh 157 (420)
T 2pb2_A 99 EPALRLGRKLIDATFAE-----------RVLFMNSGTEANETAFKLARHYACVR-HSPF---------KTKIIAFHNAFH 157 (420)
T ss_dssp HHHHHHHHHHHHHSSCS-----------EEEEESSHHHHHHHHHHHHHHHHHHH-TCTT---------CCEEEEETTCCC
T ss_pred HHHHHHHHHHHhhCCCC-----------eEEEeCCHHHHHHHHHHHHHHHhhhc-cCCC---------CCEEEEEeCCcC
Confidence 45566777888888742 47899999999999999988643221 1000 123566667778
Q ss_pred hhHHHHHHhCCCc------------eEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccc----cccHHH
Q psy13453 642 SSVEKSAIIGDVP------------VRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCA----FDNLEE 705 (764)
Q Consensus 642 ~Sv~kAa~~lGl~------------v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Ga----iDpl~e 705 (764)
.+...++...|.. +..+|.+ |+++|+++|++. +.+|+++..++..|. .+++++
T Consensus 158 ~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~-----d~~~le~~i~~~------~~~vi~~p~~~~gG~~~~~~~~l~~ 226 (420)
T 2pb2_A 158 GRSLFTVSVGGQPKYSDGFGPKPADIIHVPFN-----DLHAVKAVMDDH------TCAVVVEPIQGEGGVQAATPEFLKG 226 (420)
T ss_dssp CSSHHHHHHSSCHHHHTTSSSCCSCEEEECTT-----CHHHHHHHCCTT------EEEEEECSEETTTTSEECCHHHHHH
T ss_pred CcCHHHHHhcCCccccccCCCCCCCeEEecCC-----CHHHHHHHhccC------ceEEEEeCCcCCCCeecCCHHHHHH
Confidence 7777777666643 5566643 799999988642 446666555554554 479999
Q ss_pred HHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 706 LGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 706 Ia~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
|+++|++||++|++|.+|.+.......+.....|+ ..|.++ ++|+++..+.+|++
T Consensus 227 l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~-~~diit--~sK~l~~G~~iG~~ 281 (420)
T 2pb2_A 227 LRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGV-TPDILT--SAKALGGGFPVSAM 281 (420)
T ss_dssp HHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTC-CCSEEE--ECGGGGTTSCCEEE
T ss_pred HHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCC-CCCeEE--ecccccCCCceEEE
Confidence 99999999999999999976322111111112244 368775 47999876667765
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-09 Score=119.62 Aligned_cols=167 Identities=15% Similarity=0.043 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcch
Q psy13453 563 LEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNS 642 (764)
Q Consensus 563 lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~ 642 (764)
...++.+++++++|. + ..+||+|||+||..++.+++.......+.. .++..|++...+|+
T Consensus 79 ~~~~l~~~la~~~g~-~----------~v~~~~~gt~a~~~al~~~~~~~~~~~~~~---------~~~~~vi~~~~~~~ 138 (392)
T 3ruy_A 79 QLGPWYEKVAKLTNK-E----------MVLPMNTGAEAVETAIKTARRWAYDVKKVE---------ANRAEIIVCEDNFH 138 (392)
T ss_dssp THHHHHHHHHHHHTC-S----------EEEEESSHHHHHHHHHHHHHHHHHHTSCCC---------TTCCEEEEETTCCC
T ss_pred HHHHHHHHHHHhcCC-C----------EEEEeCcHHHHHHHHHHHHHHhhhhccCCC---------CCCcEEEEEcCCcC
Confidence 345566788888883 2 478999999999999998876522111100 11224555555554
Q ss_pred hHH-HHHHhCCC------------ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc----HHH
Q psy13453 643 SVE-KSAIIGDV------------PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN----LEE 705 (764)
Q Consensus 643 Sv~-kAa~~lGl------------~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp----l~e 705 (764)
+.. .+....+. .+..++.+ |+++|+++|+++ +.+|+.+..++.+|.+-| +++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~------~~~v~~~~~~nptG~~~~~~~~l~~ 207 (392)
T 3ruy_A 139 GRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYG-----DLEALKAAITPN------TAAFILEPIQGEAGINIPPAGFLKE 207 (392)
T ss_dssp CSSHHHHHTCSCTTTTTTCCSCCSSEEEECTT-----CHHHHHHHCCTT------EEEEEECSSBSTTTSBCCCTTHHHH
T ss_pred CCCHhhhhccCChhhccccCCCCCCCeeeCcc-----cHHHHHHHhccC------eEEEEEeCccCCCCCccCCHHHHHH
Confidence 443 33333221 24444432 799999998633 458888888999999998 999
Q ss_pred HHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 706 LGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 706 Ia~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
|+++|++||+++|+|.+|++.............++ ..|.++++ |.++.- +..|++
T Consensus 208 i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~d~~~~S--K~l~gG~~~~G~~ 263 (392)
T 3ruy_A 208 ALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNV-TPDMYILG--KALGGGVFPISCA 263 (392)
T ss_dssp HHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEEEC--GGGGTTTSCCEEE
T ss_pred HHHHHHHcCCEEEEeechhCCCccccchhhhccCC-CCCEEEEc--hhhhCChhhhEEE
Confidence 99999999999999999975322111111222233 45888876 976542 345554
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.06 E-value=5.5e-10 Score=123.76 Aligned_cols=180 Identities=12% Similarity=0.001 Sum_probs=128.1
Q ss_pred cccCCchHHHHHHHHHHHHHHHc-CCCccccCCCCCCCc---EEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccc
Q psy13453 553 SWLSSPACTELEVLVMNWLGKAL-GLPEEFLNCSPGPGG---GIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDI 628 (764)
Q Consensus 553 ~~~~sp~~t~lE~~v~~~la~ll-G~p~~~~~~~~~~~~---GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~ 628 (764)
.|.......++++.+.+|+.+.. +.++ .. .++|+|||+++..++.+..+
T Consensus 83 ~y~~~~g~~~lr~~ia~~~~~~~~~~~~---------~~~~~i~~t~g~~~al~~~~~~l~~------------------ 135 (430)
T 2x5f_A 83 PYAPPQGIEELRDLWQQKMLRDNPELSI---------DNMSRPIVTNALTHGLSLVGDLFVN------------------ 135 (430)
T ss_dssp SCCCTTCCHHHHHHHHHHHHHHCTTCCG---------GGBCCCEEESHHHHHHHHHHHHHCC------------------
T ss_pred ccCCCCCCHHHHHHHHHHHhccCcccCC---------CccceEEEcCCchHHHHHHHHHHhC------------------
Confidence 34333346778888888887663 3333 34 78999999999888765421
Q ss_pred cCceEEEecCCcchhHHHHHHh-CCCceEEEecCC-CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc---H
Q psy13453 629 RNKLVAYTSDQSNSSVEKSAII-GDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN---L 703 (764)
Q Consensus 629 ~~~~vi~~S~~aH~Sv~kAa~~-lGl~v~~Vp~d~-~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp---l 703 (764)
++..|++..-+|.+....+.. .|.+++.+|.++ ++.+|+++|+++|++. +..+.+|+.+..++.+|.+-+ +
T Consensus 136 -~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~i~~p~nptG~~~~~~~l 211 (430)
T 2x5f_A 136 -QDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSY---NKDKVIMILNYPNNPTGYTPTHKEV 211 (430)
T ss_dssp -TTCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCTTSCBCSHHHHHHHHHC---CSSEEEEEECSSCTTTCCCCCHHHH
T ss_pred -CCCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCccCCcCHHHHHHHHHhc---CCCCEEEEEcCCCCCCCCcCCHHHH
Confidence 112477788899999999998 999999999875 4789999999999752 223557777888999999977 8
Q ss_pred HHHHHHHHh-----cCCEEEEeccccccccccc---hhhhhhcCCCcc---cEEEEcCCccCCCC-cCceee
Q psy13453 704 EELGPICQE-----YNIWLHVDAAYAGSALLLP---EYAHLKRGLEYV---DSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 704 ~eIa~i~~~-----~glwLHVDaA~Gg~~l~~~---~~r~~l~gie~a---DSit~d~HK~l~~P-~~~g~l 763 (764)
++|+++|++ ||+++++|.+|+.+..-.. .....+.+.... +-+..++||+++.| +.+|++
T Consensus 212 ~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~ 283 (430)
T 2x5f_A 212 TTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFM 283 (430)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCCEEE
T ss_pred HHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCeEEE
Confidence 999999999 9999999999987543211 111022232223 45578999999755 235654
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.6e-09 Score=117.75 Aligned_cols=174 Identities=13% Similarity=0.044 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
....++.+.++++++-+. ....+||+|||+|+..++..||... . ++-+++.+...|
T Consensus 84 ~~~~~l~~~la~~~~~~~--------~~~v~~~~g~~~a~~~~~~~a~~~~-~---------------~~~vi~~~p~y~ 139 (426)
T 1sff_A 84 EPYLELCEIMNQKVPGDF--------AKKTLLVTTGSEAVENAVKIARAAT-K---------------RSGTIAFSGAYH 139 (426)
T ss_dssp HHHHHHHHHHHHHSSCSS--------CEEEEEESSHHHHHHHHHHHHHHHH-T---------------CCEEEEETTCCC
T ss_pred HHHHHHHHHHHHhCCccc--------ccEEEEeCchHHHHHHHHHHHHHhh-C---------------CCeEEEECCCcC
Confidence 345566777888873121 0257899999999999998776432 1 123566777888
Q ss_pred hhHHHHHHhCCCc-------------eEEEecCC-----CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc-
Q psy13453 642 SSVEKSAIIGDVP-------------VRQLRSDD-----NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN- 702 (764)
Q Consensus 642 ~Sv~kAa~~lGl~-------------v~~Vp~d~-----~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp- 702 (764)
.+...++...|.. ++.+|.+. ++.+|+++|+++|++.. .+..+.+|+++.-.+++|.+.+
T Consensus 140 ~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~~~v~~~p~~~ntG~~~~~ 218 (426)
T 1sff_A 140 GRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDA-APEDIAAIVIEPVQGEGGFYASS 218 (426)
T ss_dssp CSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTC-CGGGEEEEEECSBCTTTTSCBCC
T ss_pred CCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhcc-CCCceEEEEEecccCCCCcccCC
Confidence 7777777776643 77788763 34689999999997521 1113446666543334897777
Q ss_pred ---HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 703 ---LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 703 ---l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
+++|+++|++||+||++|.+|++.....+.+.....++ ..|.+ +++|+++..+.+|++
T Consensus 219 ~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~di~--s~sK~~~~GlriG~~ 279 (426)
T 1sff_A 219 PAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGV-APDLT--TFAKSIAGGFPLAGV 279 (426)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTS-CCSEE--EECGGGGTSSCCEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhhhcCC-CCCEE--EEcccccCCCceEEE
Confidence 99999999999999999999996321111111112232 35755 557998853335665
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1e-09 Score=122.45 Aligned_cols=217 Identities=13% Similarity=0.057 Sum_probs=138.5
Q ss_pred ccccCCcceeeeeHH----HHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCch
Q psy13453 11 AYPSETLSLLIYESF----KATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLN 86 (764)
Q Consensus 11 ~~~~~~~~~~~YSv~----KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~ 86 (764)
.+.++. .|.|.. +.|+.+|+.. +.||+ +++++|+++ |++ ++-+++.+.+ +++|.++|++
T Consensus 153 Viv~~~---~h~s~~~~~~~~a~~~G~~v---~~v~~-~~~~~d~~~----i~~-----~t~~v~i~~p-n~tG~~~~l~ 215 (438)
T 1wyu_A 153 VLVSQG---VHPEYRAVLRAYLEAVGAKL---LTLPL-EGGRTPLPE----VGE-----EVGAVVVQNP-NFLGALEDLG 215 (438)
T ss_dssp EEEETT---SCHHHHHHHHHHHHHTTCEE---EEECC-BTTBCCCCC----CCT-----TEEEEEEESS-CTTSBCCCHH
T ss_pred EEEcCc---cCHhHHHHHHHHHHHCCCEE---EEEcC-cCCccCHHH----hCC-----CeEEEEEECC-CCCeEEecHH
Confidence 344454 576666 4456689866 88998 568999877 432 2223356777 9999999999
Q ss_pred hhhc-----CCCceecc--c-cc-----------------ccc----------ceeeeecCCCcccccccc-----cccc
Q psy13453 87 APVS-----NGPLKVGG--V-LR-----------------RVY----------SSCLVPRGQKSLRTTVLF-----HFLF 126 (764)
Q Consensus 87 ~ia~-----~~wlHVDa--~-l~-----------------~~y----------~s~ll~rd~~~l~~~~s~-----~~d~ 126 (764)
++++ ++|+|||+ . +. ++| +++++.++. .... +.. ..+.
T Consensus 216 ~i~~la~~~g~~vivd~d~~a~g~~~~~~~~g~D~~~~s~kk~~~~~~~~Gp~~G~l~~~~~-~~~~-l~~~~~g~~~~~ 293 (438)
T 1wyu_A 216 PFAEAAHGAGALFVAVADPLSLGVLKPPGAYGADIAVGDGQSLGLPMGFGGPHFGFLATKKA-FVRQ-LPGRLVSETVDV 293 (438)
T ss_dssp HHHHHHHHTTCEEEEECCTTGGGTBCCHHHHTCSEEEEECTTTTCCCGGGCSCCEEEEECGG-GGGG-CCSCCEEEEEBT
T ss_pred HHHHHHHHcCCEEEEEechhhccCcCCCccCCCCEEEECCcccCCCccCCCCCeeEEEEcHH-HHHh-CCCceecccccc
Confidence 9886 89999543 2 10 111 134444322 1111 000 0000
Q ss_pred ---CCccc------------CCCCcc---cH-HHH--HHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCC-C
Q psy13453 127 ---QHWQI------------PLGRRF---RA-LKL--WMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCP-P 184 (764)
Q Consensus 127 ---~d~tl------------e~SRr~---~A-Lkl--WatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~-P 184 (764)
..|.+ .++... .+ ..+ |+.+..+|.+|+.++.++..++++++.+.|++.++++++.+ +
T Consensus 294 ~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~ 373 (438)
T 1wyu_A 294 EGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKP 373 (438)
T ss_dssp TSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSS
T ss_pred CCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCCC
Confidence 00111 011111 22 234 44488999999999999999999999999999999999876 5
Q ss_pred CceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEE-EEeceeCCeeEEEEeccCCCCCHHHHHHHHHHH
Q psy13453 185 SMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIY-IVKGSFQDRLFMRFAICSSQTEESDVQLGWNEI 263 (764)
Q Consensus 185 ~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~-vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l 263 (764)
.+.+++|+.. .+ ..++.++|.++|+.. +......+..++|+++. +.+++++++.+++.|
T Consensus 374 ~~~~~~~~~~-----------------~~--~~~~~~~L~~~gi~v~~~~~~~~~~~~lRis~~-~~~t~edi~~~~~~l 433 (438)
T 1wyu_A 374 FFNEFALALP-----------------KD--PEAVRRALAERGFHGATPVPREYGENLALFAAT-ELHEEEDLLALREAL 433 (438)
T ss_dssp BCSEEEEECS-----------------SC--HHHHHHHHHHTTCCCCEECCTTSCSSEEEEECC-TTCCHHHHHHHHHHH
T ss_pred eEEEEEEeCC-----------------CC--HHHHHHHHHHCCceeccccccccCCCeEEEEec-ccCCHHHHHHHHHHH
Confidence 5666777531 01 246888888889854 12222223568999877 678899999999999
Q ss_pred HHH
Q psy13453 264 RTA 266 (764)
Q Consensus 264 ~~~ 266 (764)
+++
T Consensus 434 ~~~ 436 (438)
T 1wyu_A 434 KEV 436 (438)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=3.3e-09 Score=117.89 Aligned_cols=175 Identities=11% Similarity=-0.068 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCC
Q psy13453 560 CTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQ 639 (764)
Q Consensus 560 ~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~ 639 (764)
......++.++++++++.... ...+||+|||+||..++.++|... + ++-+|+....
T Consensus 84 ~~~~~~~l~~~la~~~~~~~~--------~~v~~~~ggsea~~~al~~~~~~~-~---------------~~~vi~~~~~ 139 (439)
T 3dxv_A 84 SNAPAVTLAERLLASFPGEGT--------HKIWFGHSGSDANEAAYRAIVKAT-G---------------RSGVIAFAGA 139 (439)
T ss_dssp EEHHHHHHHHHHHHTTTCTTT--------EEEEEESSHHHHHHHHHHHHHHHH-S---------------CCEEEEETTC
T ss_pred CCHHHHHHHHHHHHhCCCCCC--------CEEEEeCCHHHHHHHHHHHHHHHh-C---------------CCEEEEECCC
Confidence 345667788899998854320 257999999999999999887532 1 1235667777
Q ss_pred cchhHHHHHHhCCCc--------------eEEEecCCCCcc-----cHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc
Q psy13453 640 SNSSVEKSAIIGDVP--------------VRQLRSDDNGVL-----RGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF 700 (764)
Q Consensus 640 aH~Sv~kAa~~lGl~--------------v~~Vp~d~~g~m-----d~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai 700 (764)
.|.+...++...|.. +..+|.+..+.- |+++|+++|++. ....+.+|+.....+.+|.+
T Consensus 140 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~~~~~vi~~p~~~~~G~~ 217 (439)
T 3dxv_A 140 YHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAV--PAGSIGAAFIEPIQSDGGLI 217 (439)
T ss_dssp CCCSSHHHHCC-------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTS--CTTCEEEEEECSSBSTTTSB
T ss_pred CCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhc--CCCCEEEEEEccccCCCCCc
Confidence 787776665554432 234454433333 799999999521 12245577777777778998
Q ss_pred cc----HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 701 DN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 701 Dp----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
-+ +++|+++|++||++|++|.+|++.......+.....++ ..|.+++ .|.++.-+..|++
T Consensus 218 ~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~-~~di~s~--sK~~~~G~riG~~ 281 (439)
T 3dxv_A 218 VPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGF-VPDILVL--GKGLGGGLPLSAV 281 (439)
T ss_dssp CCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTC-CCSEEEE--CGGGGTTSCCEEE
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCC-CCCEEEE--cchhcCCcceEEE
Confidence 88 99999999999999999999986321111111112233 3576654 5988754445654
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.2e-09 Score=117.37 Aligned_cols=167 Identities=16% Similarity=0.105 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
.....++.+++++++|. + ..+||+|||+||..|+.+++...... +. .++-+|+.+..-
T Consensus 77 ~~~~~~l~~~la~~~~~-~----------~v~~~~gg~ea~~~al~~~~~~~~~~-g~----------~~~~vi~~~~~y 134 (395)
T 3nx3_A 77 NENIAAAAKNLAKASAL-E----------RVFFTNSGTESIEGAMKTARKYAFNK-GV----------KGGQFIAFKHSF 134 (395)
T ss_dssp CHHHHHHHHHHHHHHTC-S----------EEEEESSHHHHHHHHHHHHHHHHHHT-TC----------TTCEEEEETTCC
T ss_pred CHHHHHHHHHHHHhcCC-C----------eEEEeCCHHHHHHHHHHHHHHHhhcc-CC----------CCCEEEEEcCCc
Confidence 34556677788888873 2 47999999999999999887654321 10 113356666666
Q ss_pred chhHHHHHHhCC------------CceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc----HH
Q psy13453 641 NSSVEKSAIIGD------------VPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN----LE 704 (764)
Q Consensus 641 H~Sv~kAa~~lG------------l~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp----l~ 704 (764)
|.+...+....+ .++..+|.+ |+++|+++|++. +.+|++....+.+|.+-+ ++
T Consensus 135 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~------~~~v~~~~~~~~~G~~~~~~~~l~ 203 (395)
T 3nx3_A 135 HGRTLGALSLTANEKYQKPFKPLISGVKFAKYN-----DISSVEKLVNEK------TCAIILESVQGEGGINPANKDFYK 203 (395)
T ss_dssp CCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTT-----CHHHHHTTCCTT------EEEEEEESEECTTSCEECCHHHHH
T ss_pred CCCCHHHHhhcCCcccccccCCCCCCcEEeCCC-----CHHHHHHhccCC------eEEEEEeCccCCCCcccCCHHHHH
Confidence 655544443332 345556543 699999888532 446666666777888877 99
Q ss_pred HHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 705 ELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 705 eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
+|+++|++||++||+|.+|.+.......+.....++ ..|.++++ |.++..+.+|++
T Consensus 204 ~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~-~~d~~t~s--K~~~~G~~~G~~ 259 (395)
T 3nx3_A 204 ALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQI-LPDIMTSA--KALGCGLSVGAF 259 (395)
T ss_dssp HHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEEEC--GGGTTTSCCEEE
T ss_pred HHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCC-CCCEEEec--ccccCCCceEEE
Confidence 999999999999999999986422211111122233 35777765 887766667765
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=3e-09 Score=113.24 Aligned_cols=223 Identities=11% Similarity=0.001 Sum_probs=144.7
Q ss_pred eeee--HHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CC
Q psy13453 20 LIYE--SFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NG 92 (764)
Q Consensus 20 ~~YS--v~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~ 92 (764)
.||| +.++++..|+.. +.||+++++.+|+++|+++|++. ++-+++.+.+++++|.+.|++++.+ ++
T Consensus 83 ~~~~~~~~~~~~~~g~~~---~~v~~~~~~~~d~~~l~~~l~~~----~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~ 155 (353)
T 2yrr_A 83 GAFSQRVAEMAALHGLDP---EVLDFPPGEPVDPEAVARALKRR----RYRMVALVHGETSTGVLNPAEAIGALAKEAGA 155 (353)
T ss_dssp SHHHHHHHHHHHHTTCCE---EEEECCTTSCCCHHHHHHHHHHS----CCSEEEEESEETTTTEECCHHHHHHHHHHHTC
T ss_pred CCchHHHHHHHHHcCCce---EEEeCCCCCCCCHHHHHHHHHhC----CCCEEEEEccCCCcceecCHHHHHHHHHHcCC
Confidence 3566 467888899876 99999999999999999999862 1224567889999999999999876 89
Q ss_pred Cceeccccccc--------cc-eeeeecCCCccccc----cc-cc---cc-cC-----------------CcccCCCCcc
Q psy13453 93 PLKVGGVLRRV--------YS-SCLVPRGQKSLRTT----VL-FH---FL-FQ-----------------HWQIPLGRRF 137 (764)
Q Consensus 93 wlHVDa~l~~~--------y~-s~ll~rd~~~l~~~----~s-~~---~d-~~-----------------d~tle~SRr~ 137 (764)
|+++|++.... +. .++...-.+.+..- +- .. .+ +. .....++...
T Consensus 156 ~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (353)
T 2yrr_A 156 LFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRGWYLDLARVAEHWERGGYHHTTPV 235 (353)
T ss_dssp EEEEECTTTTTTSCCCHHHHTCSEEECCTTSTTCCCSSCEEEEECHHHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCH
T ss_pred eEEEEcCcccccccccccccCceEEEecCcccccCCCceEEEEECHHHHHHhccCCCccccHHHHhhhhhcCCCCCCCCH
Confidence 99999964210 00 11111111111100 00 00 00 00 0111222222
Q ss_pred -cHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC--CceeEEEEeeccccccccccccCccCCccH
Q psy13453 138 -RALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPP--SMGLVCFRLKVRFWDKLDNLFGTISFGDND 214 (764)
Q Consensus 138 -~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P--~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~ 214 (764)
....+++++..+..+|+.++.++..++++++.+.|++. +++++.++ ...+++|++. . +.+
T Consensus 236 ~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-~--------------~~~- 298 (353)
T 2yrr_A 236 LLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR-GFRPYPKASPLPTVLVVRPP-E--------------GVD- 298 (353)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSSBCTTEEEEECC-T--------------TCC-
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCccccCccCCCeEEEEECC-C--------------CCC-
Confidence 22355778888888889999999999999999999997 89987754 3456678752 1 111
Q ss_pred HHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHH-HHHHHHHHHHH
Q psy13453 215 LNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQ-LGWNEIRTATE 268 (764)
Q Consensus 215 ~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~-~~l~~l~~~~~ 268 (764)
..++.++|.++|..+..........++|+++....+ +++++ .+++.|+++.+
T Consensus 299 -~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~~~~-~~~~~~~~~~~l~~~l~ 351 (353)
T 2yrr_A 299 -ADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGA-RREAYQAFLKALDRALA 351 (353)
T ss_dssp -HHHHHHHHHHTTEECEECCGGGTTTCEEEECSGGGS-CHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHCCEEEeCCccccCCCeEEEecCccCC-HHHHHHHHHHHHHHHHh
Confidence 246888888888755443322334679998655554 55666 99999887653
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=4.3e-09 Score=116.73 Aligned_cols=183 Identities=13% Similarity=0.018 Sum_probs=122.5
Q ss_pred chHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEec
Q psy13453 558 PACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTS 637 (764)
Q Consensus 558 p~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S 637 (764)
.....+-+.+.+|+.+..|.+..-.....+....++|+|+++++..++.+..+ ++..|++.
T Consensus 78 ~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~-------------------~gd~Vlv~ 138 (425)
T 2r2n_A 78 AGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIIN-------------------PGDNVLLD 138 (425)
T ss_dssp TCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCC-------------------TTCEEEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCC-------------------CCCEEEEe
Confidence 33456777888899888887541000000013678999999998877765421 11257778
Q ss_pred CCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhh------hcCCCceEEEE-eeccCCccccccHH---HHH
Q psy13453 638 DQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDL------AKGLIPCCLIA-TLGTTGTCAFDNLE---ELG 707 (764)
Q Consensus 638 ~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~------~~G~~p~~Vva-taGTT~~GaiDpl~---eIa 707 (764)
+-+|.....+++..|.+++.||.+++| +|+++|++++++.. ..+..+-+|++ ...++.+|.+-+.+ +|+
T Consensus 139 ~p~y~~~~~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~ 217 (425)
T 2r2n_A 139 EPAYSGTLQSLHPLGCNIINVASDESG-IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIY 217 (425)
T ss_dssp SSCCHHHHHHHGGGTCEEEEECEETTE-ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHH
T ss_pred CCCcHHHHHHHHHcCCEEEEeCcCCCC-CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHH
Confidence 889999999999999999999998765 99999999986321 01123445544 56788899987655 999
Q ss_pred HHHHhcCCEEEEeccccccccccc---hhhhhhcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 708 PICQEYNIWLHVDAAYAGSALLLP---EYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 708 ~i~~~~glwLHVDaA~Gg~~l~~~---~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
++|++||+|+++|.+|+....-.. .... +. -..-+-+..+++|+++ | +-+|.+
T Consensus 218 ~~a~~~~~~li~De~~~~~~~~g~~~~~~~~-~~-~~~~~i~~~s~SK~~~-~GlRiG~~ 274 (425)
T 2r2n_A 218 ELARKYDFLIIEDDPYYFLQFNKFRVPTFLS-MD-VDGRVIRADSFSKIIS-SGLRIGFL 274 (425)
T ss_dssp HHHHHTTCEEEEECTTGGGBSSSSCCCCTGG-GC-TTSCEEEEEESTTTTC-STTCCEEE
T ss_pred HHHHHcCCEEEEECCcccccCCCCCCCCccc-cC-CCCCEEEEccchhhcc-CccceEEE
Confidence 999999999999999986432111 1111 11 1112466779999997 4 235654
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.5e-09 Score=118.52 Aligned_cols=175 Identities=14% Similarity=-0.016 Sum_probs=115.5
Q ss_pred HHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHH--HHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhH
Q psy13453 567 VMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATL--VSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV 644 (764)
Q Consensus 567 v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl--~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv 644 (764)
+.+.++++++.+++ ..++|+|+++++. .++.+..+. .+... . .+. ..++..|++.+-+|.+.
T Consensus 83 lr~~ia~~~~~~~~---------~i~~t~G~~~al~~~~~~~~l~~~-~~g~~-~--~~~---~~~gd~V~v~~p~y~~~ 146 (427)
T 3ppl_A 83 IRQIWADLLGVPVE---------QVLAGDASSLNIMFDVISWSYIFG-NNDSV-Q--PWS---KEETVKWICPVPGYDRH 146 (427)
T ss_dssp HHHHHHHHHTSCGG---------GEEECSSCHHHHHHHHHHHHHHHC-CTTCS-S--CGG---GSSCCEEEEEESCCHHH
T ss_pred HHHHHHHHhCCCcc---------eEEEeCCcHHHHHHHHHHHHHhcc-CCccc-c--ccc---CCCCCEEEEcCCCcHHH
Confidence 33445555577653 6899999999984 444433220 01000 0 000 00123577888999999
Q ss_pred HHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEe-eccCCccccccHH---HHHHHH-HhcCCEEEE
Q psy13453 645 EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIAT-LGTTGTCAFDNLE---ELGPIC-QEYNIWLHV 719 (764)
Q Consensus 645 ~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~Vvat-aGTT~~GaiDpl~---eIa~i~-~~~glwLHV 719 (764)
..+++..|.+++.||++++| +|+++|+++++.. .+-+|+++ ..++.+|.+-+.+ +|+++| ++||+|+|+
T Consensus 147 ~~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~~-----~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~ 220 (427)
T 3ppl_A 147 FSITERFGFEMISVPMNEDG-PDMDAVEELVKNP-----QVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVW 220 (427)
T ss_dssp HHHHHHTTCEEEEEEEETTE-ECHHHHHHHTTST-----TEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEE
T ss_pred HHHHHHcCCEEEEeCCCCCC-CCHHHHHHHHhcC-----CCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEE
Confidence 99999999999999999877 9999999998421 23355555 6789999997666 888899 999999999
Q ss_pred eccccccccccc-----hhhhhh--cCCCcccEEEEcCCccCCCCcCceee
Q psy13453 720 DAAYAGSALLLP-----EYAHLK--RGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 720 DaA~Gg~~l~~~-----~~r~~l--~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
|.+|+...+-.. ...... .+....+-+..+++|+++....+|.+
T Consensus 221 De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~ 271 (427)
T 3ppl_A 221 DNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFF 271 (427)
T ss_dssp ECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEE
T ss_pred ECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEE
Confidence 999987432211 111110 11223367788999997666677764
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.2e-09 Score=116.18 Aligned_cols=223 Identities=10% Similarity=0.043 Sum_probs=146.7
Q ss_pred HHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCceecc
Q psy13453 24 SFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKVGG 98 (764)
Q Consensus 24 v~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHVDa 98 (764)
+.+++...|... +.+|++.++.+|+++|+++|++. ++-+++.+.+++++|.+.|++++.+ ++|+++|+
T Consensus 113 ~~~~~~~~g~~~---~~~~~~~~~~~d~~~l~~~i~~~----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De 185 (393)
T 3kgw_A 113 AAEIADRIGARV---HQMIKKPGEHYTLQEVEEGLAQH----KPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDS 185 (393)
T ss_dssp HHHHHHHTTCEE---EEEECCTTCCCCHHHHHHHHHHH----CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHcCCce---EEEeCCCCCCCCHHHHHHHHhhC----CCcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEEC
Confidence 378888999876 99999999999999999999873 1235567778999999999999886 89999999
Q ss_pred cccc---c-----cc-eeeeecCCCccccc----cc-cccc---------------cCCc-------c------c-CCCC
Q psy13453 99 VLRR---V-----YS-SCLVPRGQKSLRTT----VL-FHFL---------------FQHW-------Q------I-PLGR 135 (764)
Q Consensus 99 ~l~~---~-----y~-s~ll~rd~~~l~~~----~s-~~~d---------------~~d~-------t------l-e~SR 135 (764)
+... . +. .++...-.+.+..- +- ...+ +.+. . . .++-
T Consensus 186 ~~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (393)
T 3kgw_A 186 VASLGGVPIYMDQQGIDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTT 265 (393)
T ss_dssp TTTTTTSCCCTTTTTCCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCC
T ss_pred CccccCcccchhhcCCCEEEecCcccccCCCceeEEEECHHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCC
Confidence 6320 0 00 11111111111100 00 0000 0000 0 0 0111
Q ss_pred -cccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC----ceeEEEEeeccccccccccccCccC
Q psy13453 136 -RFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS----MGLVCFRLKVRFWDKLDNLFGTISF 210 (764)
Q Consensus 136 -r~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~----l~iV~Fry~P~~~~~~~~~~~~~~~ 210 (764)
......+++++..+..+++.++.++..++++++.+.|++. +++++.++. ..+++|++. .+
T Consensus 266 ~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-~~------------- 330 (393)
T 3kgw_A 266 PVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEM-GLKFFVKDPEIRLPTITTVTVP-AG------------- 330 (393)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSSSGGGBCSSEEEEECC-TT-------------
T ss_pred CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcCCeEEEEeCC-CC-------------
Confidence 2223355777888888899999999999999999999998 888764322 245556542 11
Q ss_pred CccHHHHHHHHHHHhc-CcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy13453 211 GDNDLNKAVYDRIIAR-KVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVL 271 (764)
Q Consensus 211 ~~d~~n~~L~~~L~~~-G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~ 271 (764)
.+ ..++.++|.++ |..+.......+..++|++++...+++++++.+++.|+++.+++.
T Consensus 331 -~~--~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~ 389 (393)
T 3kgw_A 331 -YN--WRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQHCP 389 (393)
T ss_dssp -BC--HHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSC
T ss_pred -CC--HHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhh
Confidence 11 24678888877 865443332234568999876777799999999999999887653
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=98.98 E-value=2e-09 Score=118.82 Aligned_cols=175 Identities=11% Similarity=-0.009 Sum_probs=115.5
Q ss_pred HHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHH--HHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhH
Q psy13453 567 VMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATL--VSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV 644 (764)
Q Consensus 567 v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl--~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv 644 (764)
+.+.++++++.+++ ..++|+|+|+++. .++.+.... .+. .. ..+. .++..|++..-+|...
T Consensus 75 lr~~ia~~~~~~~~---------~i~~t~G~~~al~~~~~~~~l~~~-~~g--~~-~~~~----~~gd~Vlv~~p~y~~~ 137 (423)
T 3ez1_A 75 ARALFAGYLDVKAE---------NVLVWNNSSLELQGLVLTFALLHG-VRG--ST-GPWL----SQTPKMIVTVPGYDRH 137 (423)
T ss_dssp HHHHHHHHTTSCGG---------GEEECSSCHHHHHHHHHHHHHHTC-CTT--CS-SCGG----GGCCEEEEEESCCHHH
T ss_pred HHHHHHHHhCCChh---------hEEEeCCcHHHHHHHHHHHHHhcc-CCC--cc-cccc----CCCCEEEEcCCCcHHH
Confidence 44455666677653 6899999999986 555443210 010 00 0000 0023577888999999
Q ss_pred HHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEe-eccCCccccccHH---HHHHHH-HhcCCEEEE
Q psy13453 645 EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIAT-LGTTGTCAFDNLE---ELGPIC-QEYNIWLHV 719 (764)
Q Consensus 645 ~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~Vvat-aGTT~~GaiDpl~---eIa~i~-~~~glwLHV 719 (764)
..++...|.+++.||.+++| +|+++|+++|++. ..+-+|+++ ..++.+|.+-+.+ +|+++| ++||+|+++
T Consensus 138 ~~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~~----~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~ 212 (423)
T 3ez1_A 138 FLLLQTLGFELLTVDMQSDG-PDVDAVERLAGTD----PSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFA 212 (423)
T ss_dssp HHHHHHHTCEEEEEEEETTE-ECHHHHHHHHHSC----TTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEE
T ss_pred HHHHHHcCCEEEeccCCCCC-CCHHHHHHHHhhC----CCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEE
Confidence 99999999999999998776 9999999999621 124455544 6788999997666 888888 999999999
Q ss_pred ecccccccccc-c-----hhhhhh--cCCCcccEEEEcCCccCCCCcCceee
Q psy13453 720 DAAYAGSALLL-P-----EYAHLK--RGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 720 DaA~Gg~~l~~-~-----~~r~~l--~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
|.+|+...+.. . ...... .+....+-+..+++|+++....+|++
T Consensus 213 De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~ 264 (423)
T 3ez1_A 213 DDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAGAGLGFV 264 (423)
T ss_dssp ECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSSSSCEEE
T ss_pred ECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhccCCcceEEE
Confidence 99998532221 0 111110 01223367788999987666777765
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=4.2e-09 Score=113.63 Aligned_cols=222 Identities=11% Similarity=0.032 Sum_probs=149.0
Q ss_pred eeee--HHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CC
Q psy13453 20 LIYE--SFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NG 92 (764)
Q Consensus 20 ~~YS--v~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~ 92 (764)
.||| +.+.+...|... +.||++.++.+|+++|+++|++. ++-+++.+.+++++|.+.|++++.+ ++
T Consensus 86 ~~~~~~~~~~~~~~g~~~---~~v~~~~~~~~d~~~l~~~i~~~----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~ 158 (384)
T 3zrp_A 86 GVFGDRWEQIFKRYPVNV---KVLRPSPGDYVKPGEVEEEVRKS----EYKLVALTHVETSTGVREPVKDVINKIRKYVE 158 (384)
T ss_dssp SHHHHHHHHHHTTSSCEE---EEECCSTTCCCCHHHHHHHHHHS----CEEEEEEESEETTTTEECCHHHHHHHHGGGEE
T ss_pred CcchHHHHHHHHHcCCcE---EEecCCCCCCCCHHHHHHHHHhC----CCcEEEEeCCCCCCceECcHHHHHHHHHhcCC
Confidence 4555 667778888876 99999999999999999999873 1224457788999999999999876 88
Q ss_pred Cceecccccc--------------------c-c-----ceeeeecCCCcccccc----ccc---cc---cC---------
Q psy13453 93 PLKVGGVLRR--------------------V-Y-----SSCLVPRGQKSLRTTV----LFH---FL---FQ--------- 127 (764)
Q Consensus 93 wlHVDa~l~~--------------------~-y-----~s~ll~rd~~~l~~~~----s~~---~d---~~--------- 127 (764)
|+++|++... + + .++++.++.. +. .+ ... .+ +.
T Consensus 159 ~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (384)
T 3zrp_A 159 LIVVDGVSSVGAEEVKAEEWNVDVYLTASQKALGSAAGLGLLLLSPKA-LS-ILDSQNSIAGYYLDLRNWLPVMRGAEEG 236 (384)
T ss_dssp EEEEECTTTTTTSCCCTTTTTCSEEEEETTSTTCCCSSEEEEEECHHH-HH-HHHHCCCSCCSTTCHHHHHHHHHHHHTT
T ss_pred EEEEECcccccCccccccccCCCEEEecCcccccCCCceEEEEECHHH-HH-HhcCCCCCCcccccHHHHHHHHHhhccc
Confidence 9999985310 1 0 0222222110 00 00 000 00 00
Q ss_pred CcccCCCC-cccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC----CceeEEEEeecccccccc
Q psy13453 128 HWQIPLGR-RFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPP----SMGLVCFRLKVRFWDKLD 202 (764)
Q Consensus 128 d~tle~SR-r~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P----~l~iV~Fry~P~~~~~~~ 202 (764)
..+.-++. ......+++++..+..+|+.++.++..++++++.+.|+++ +++++.++ ...+++|++..
T Consensus 237 ~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~------- 308 (384)
T 3zrp_A 237 KAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL-GLEIVARRPESYSNTVTGVILKV------- 308 (384)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSCSSGGGBCSSEEEEECSS-------
T ss_pred CCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCeEccCcccccCccEEEEECCC-------
Confidence 00000122 2234466788888888889999999999999999999998 88877655 35677786531
Q ss_pred ccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy13453 203 NLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVL 271 (764)
Q Consensus 203 ~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~ 271 (764)
.+ ..++.++|.++|.......... ..++|+++... +++++++.+++.|+++.+++.
T Consensus 309 ---------~~--~~~~~~~l~~~gi~v~~g~~~~-~~~iRi~~~~~-~~~e~i~~~~~~l~~~l~~~~ 364 (384)
T 3zrp_A 309 ---------AD--PQKVLAGTVNEGVEFAPGVHPA-FKYFRIGHMGW-VTPNDAIIAISVIERTLRKLG 364 (384)
T ss_dssp ---------SC--HHHHHHHHHTTTCCCEECCCTT-CCEEEEECCSS-CCHHHHHHHHHHHHHHHHHHT
T ss_pred ---------CC--HHHHHHHHHHCCEEEecCCCCC-cCEEEEecccc-CCHHHHHHHHHHHHHHHHHcC
Confidence 11 2468888888887544222111 16899976655 789999999999999987764
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.97 E-value=7.1e-09 Score=114.88 Aligned_cols=170 Identities=13% Similarity=-0.063 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHcCCC-ccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcch
Q psy13453 564 EVLVMNWLGKALGLP-EEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNS 642 (764)
Q Consensus 564 E~~v~~~la~llG~p-~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~ 642 (764)
..++.+.+++++|.+ + ...+||+|||++|..++.+++... ++-+|+....-|.
T Consensus 88 ~~~l~~~la~~~~~~~~---------~~v~~~~gg~ea~~~ai~~~~~~~-----------------~~~vi~~~p~yh~ 141 (419)
T 2eo5_A 88 QLELAKKLVTYSPGNFQ---------KKVFFSNSGTEAIEASIKVVKNTG-----------------RKYIIAFLGGFHG 141 (419)
T ss_dssp HHHHHHHHHHHSSCSSC---------EEEEEESSHHHHHHHHHHHHHTTS-----------------CCEEEEETTCCCC
T ss_pred HHHHHHHHHHhCCCCcC---------CEEEEeCchHHHHHHHHHHHHHhh-----------------CCcEEEECCCcCC
Confidence 345667888888875 3 257999999999999998875321 1235666667786
Q ss_pred hHHHHHHhCC-------------CceEEEecCCCCc----------------ccHHHHH-HHHHHhhhcCCCceEEEEee
Q psy13453 643 SVEKSAIIGD-------------VPVRQLRSDDNGV----------------LRGDALL-TAVKEDLAKGLIPCCLIATL 692 (764)
Q Consensus 643 Sv~kAa~~lG-------------l~v~~Vp~d~~g~----------------md~~~Le-~~I~~~~~~G~~p~~Vvata 692 (764)
+...++...| .+++.+|.+++++ +|+++|+ ++|++.. ....+.+|+++-
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~-~~~~~~~vi~~p 220 (419)
T 2eo5_A 142 RTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLV-PPEEVAGIFFEP 220 (419)
T ss_dssp SSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTC-CGGGEEEEEECS
T ss_pred CCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhcc-CCCCEEEEEEeC
Confidence 6665554432 2678888865543 5789999 9887421 001244555554
Q ss_pred ccCCcccccc----HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 693 GTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 693 GTT~~GaiDp----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
-++.+|.+-+ +++|+++|++||++||+|.+|.+....-..+.....++ ..|.+|+ -|.++.+ +.+|.+
T Consensus 221 ~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~-~~d~~t~--sK~~~~G~~riG~~ 293 (419)
T 2eo5_A 221 IQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNT-VPDVITL--AKALGGGIMPIGAT 293 (419)
T ss_dssp SBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEEE--CGGGGTTTSCCEEE
T ss_pred ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCC-CCCEEEe--cccccCCccceEEE
Confidence 4455797655 99999999999999999999986432111111111233 3577765 4888765 667765
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=98.97 E-value=5.5e-09 Score=114.31 Aligned_cols=218 Identities=9% Similarity=0.015 Sum_probs=145.8
Q ss_pred HHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCceecc
Q psy13453 24 SFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKVGG 98 (764)
Q Consensus 24 v~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHVDa 98 (764)
+.++++..|... +.||+++++.+|+++|+++|+++ +-+++.+.+++++|.+.|++++++ ++|+++|+
T Consensus 135 ~~~~~~~~g~~~---~~v~~~~~~~~d~~~l~~~l~~~-----~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~ 206 (420)
T 1t3i_A 135 WQMVAAKTGAVL---KFVQLDEQESFDLEHFKTLLSEK-----TKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDA 206 (420)
T ss_dssp HHHHHHHHCCEE---EEECBCTTSSBCHHHHHHHCCTT-----EEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHhcCcEE---EEeccCCCCCcCHHHHHHhhCCC-----ceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEh
Confidence 677888899876 99999999999999999999642 224467889999999999999876 89999999
Q ss_pred cccc--------------------c-c----ceeeeecCCCccccccccccccC----------------CcccC-CCCc
Q psy13453 99 VLRR--------------------V-Y----SSCLVPRGQKSLRTTVLFHFLFQ----------------HWQIP-LGRR 136 (764)
Q Consensus 99 ~l~~--------------------~-y----~s~ll~rd~~~l~~~~s~~~d~~----------------d~tle-~SRr 136 (764)
+... + + +++++.++ +.... +......+ .+.++ ++..
T Consensus 207 a~~~~~~~~~~~~~~~di~~~s~sK~~~~~g~G~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (420)
T 1t3i_A 207 CQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKE-EILEA-MPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPA 284 (420)
T ss_dssp TTTTTTSCCCHHHHTCSEEEEEGGGTTSCTTCEEEEECH-HHHHH-SCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCC
T ss_pred hhccCCccCchhhcCCCEEEEehhhhcCCCceEEEEEch-HHHhh-cCceecCCCccccccccccCCCCchhhccCCCcc
Confidence 5311 0 0 02222221 10000 00000000 00111 1222
Q ss_pred c-cHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC-----CceeEEEEeeccccccccccccCccC
Q psy13453 137 F-RALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPP-----SMGLVCFRLKVRFWDKLDNLFGTISF 210 (764)
Q Consensus 137 ~-~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P-----~l~iV~Fry~P~~~~~~~~~~~~~~~ 210 (764)
. .++.++++++.+...|+.++.++..++++++.+.|++.++++++.++ ..++++|++. .
T Consensus 285 ~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~-~-------------- 349 (420)
T 1t3i_A 285 IAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVA-G-------------- 349 (420)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEET-T--------------
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEEEEC-C--------------
Confidence 2 22345557888877789999999999999999999999999988765 3678888742 1
Q ss_pred CccHHHHHHHHHHHhcCcEEEEec--------eeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 211 GDNDLNKAVYDRIIARKVIYIVKG--------SFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 211 ~~d~~n~~L~~~L~~~G~~~vs~t--------~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
.+ ..++.+.|.+.|..+.... .+....++|+++. ..+++++++.+++.|+++.+++
T Consensus 350 -~~--~~~~~~~l~~~gi~v~~~~~~~~~~~~~~g~~~~iRis~~-~~~~~~~i~~~~~~l~~~~~~~ 413 (420)
T 1t3i_A 350 -LH--ASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLY-FYNTKEEIDLFLQSLQATIRFF 413 (420)
T ss_dssp -BC--HHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECC-TTCCHHHHHHHHHHHHHHHHHT
T ss_pred -CC--HHHHHHHHHHCCeEEeeccccchHHHHhcCCCCeEEEecC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 11 1357788888887543221 1111568999765 5568999999999999988765
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.97 E-value=7.3e-09 Score=111.98 Aligned_cols=225 Identities=12% Similarity=0.020 Sum_probs=149.8
Q ss_pred eeee--HHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CC
Q psy13453 20 LIYE--SFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NG 92 (764)
Q Consensus 20 ~~YS--v~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~ 92 (764)
.|+| +.+++...|... +.||++.++.+|+++|+++|++.. ++-+++.+.+++++|.+.|++++++ ++
T Consensus 104 ~~~~~~~~~~~~~~g~~~---~~v~~~~~~~~d~~~l~~~l~~~~---~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~ 177 (386)
T 2dr1_A 104 GAFGKRYKEVVESNGRKA---VVLEYEPGKAVKPEDLDDALRKNP---DVEAVTITYNETSTGVLNPLPELAKVAKEHDK 177 (386)
T ss_dssp SHHHHHHHHHHHHTTCEE---EEEECCTTCCCCHHHHHHHHHHCT---TCCEEEEESEETTTTEECCHHHHHHHHHHTTC
T ss_pred CchhHHHHHHHHHhCCce---EEEecCCCCCCCHHHHHHHHhcCC---CCcEEEEEeecCCcchhCCHHHHHHHHHHcCC
Confidence 4566 889999999876 999999989999999999997521 2234567788999999999999886 89
Q ss_pred Cceeccccccc--------cc------------------eeeeecCCCcccccccc----c--cc-------cC-CcccC
Q psy13453 93 PLKVGGVLRRV--------YS------------------SCLVPRGQKSLRTTVLF----H--FL-------FQ-HWQIP 132 (764)
Q Consensus 93 wlHVDa~l~~~--------y~------------------s~ll~rd~~~l~~~~s~----~--~d-------~~-d~tle 132 (764)
++++|++.... +. ++++.++. ... .+.. . .+ +. .....
T Consensus 178 ~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~g~G~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (386)
T 2dr1_A 178 LVFVDAVSAMGGADIKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSER-FLE-IAEKMPERGWYFDIPLYVKYLKEKESTP 255 (386)
T ss_dssp EEEEECTTTBTTBCCCTTTTTCSEEEEETTSTTCCCSSCEEEEECHH-HHH-HHTTCTTCCSTTCHHHHHHHHHHHSSCS
T ss_pred eEEEEccccccCccccccccCCcEEEEeccccccCCCceEEEEECHH-HHH-HHhcCCCCceEEeHHHHHHhhccCCCCC
Confidence 99999953100 00 12222211 000 0000 0 00 00 00111
Q ss_pred CCC-cccHHHHHHHHHHccHH-HHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC---CceeEEEEeeccccccccccccC
Q psy13453 133 LGR-RFRALKLWMTLRSYGLK-GLQAYLRKHISLAKKFADLVEQDDRFELVCPP---SMGLVCFRLKVRFWDKLDNLFGT 207 (764)
Q Consensus 133 ~SR-r~~ALklWatL~~lG~e-Gy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P---~l~iV~Fry~P~~~~~~~~~~~~ 207 (764)
++. ......++++|+.+... |+.++.++..++++++.+.|++. +++++.++ ..++++|++..
T Consensus 256 ~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~------------ 322 (386)
T 2dr1_A 256 STPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREI-GLDILAEPGHESPTITAVLTPP------------ 322 (386)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCTTCBCSSEEEEECCT------------
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCeeCcCccccCCceEEEEcCC------------
Confidence 222 22234567778777666 78999999999999999999998 88876543 35677786531
Q ss_pred ccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy13453 208 ISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVL 271 (764)
Q Consensus 208 ~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~ 271 (764)
+.+ ..++.++|.++|..........+..++|+++.. .+++++++.+++.|+++.+++.
T Consensus 323 ---~~~--~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~-~~~~~~i~~~~~~l~~~~~~~~ 380 (386)
T 2dr1_A 323 ---GIK--GDEVYEAMRKRGFELAKGYGSVKEKTFRIGHMG-YMKFEDIQEMLDNLREVINELK 380 (386)
T ss_dssp ---TCC--HHHHHHHHHHTTEECEECCGGGTTTEEEEECCS-SCCHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCC--HHHHHHHHHHCCeEEecCccccCCCEEEEECCC-CCCHHHHHHHHHHHHHHHHHcC
Confidence 111 256888888888754443322234689998765 6689999999999999887764
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.3e-08 Score=112.88 Aligned_cols=177 Identities=17% Similarity=0.113 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
....++.+|+++.++.+. ...+||+|||+||..|+.+++...... +.. .++.+|+....-|
T Consensus 72 ~~~~~l~~~la~~~~~~~---------~~v~~~~gg~ea~~~al~~~~~~~~~~-g~~---------~~~~vi~~~~~yh 132 (430)
T 3i4j_A 72 DVLEEYAGRLARFVGLPT---------FRFWAVSGGSEATESAVKLARQYHVER-GEP---------GRFKVITRVPSYH 132 (430)
T ss_dssp HHHHHHHHHHHHHTTCTT---------CEEEEESSHHHHHHHHHHHHHHHHHHT-TCT---------TCCEEEEETTC--
T ss_pred HHHHHHHHHHHHhCCCCC---------CEEEEeCcHHHHHHHHHHHHHHHHHhc-CCC---------CCcEEEEEeCCcC
Confidence 455667788999988654 268999999999999999988754332 110 1133455555555
Q ss_pred hhHHHHHHhCCC--------------ceEEEecCCC---CcccHHHHHHHHHHhhhcCCCceEEEEeeccC-Ccccccc-
Q psy13453 642 SSVEKSAIIGDV--------------PVRQLRSDDN---GVLRGDALLTAVKEDLAKGLIPCCLIATLGTT-GTCAFDN- 702 (764)
Q Consensus 642 ~Sv~kAa~~lGl--------------~v~~Vp~d~~---g~md~~~Le~~I~~~~~~G~~p~~VvataGTT-~~GaiDp- 702 (764)
....-+....+. .+..+|.++. +..|+++|+++|++... ..+.+|++.--+. .+|.+-+
T Consensus 133 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~--~~~~~vi~~p~~~~~~G~~~~~ 210 (430)
T 3i4j_A 133 GASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGP--ETVAAFMAEPVVGASDAALAPA 210 (430)
T ss_dssp -----------------------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCG--GGEEEEEECSSCCGGGTTCCCC
T ss_pred CCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCC--CCEEEEEEcCcccCcCCcccCC
Confidence 544333333221 4455665544 56788999999975310 2345666666565 7787766
Q ss_pred ---HHHHHHHHHhcCCEEEEeccccccccccchhhhhhc-CCCcccEEEEcCCccCCCC-cCcee
Q psy13453 703 ---LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKR-GLEYVDSFDFNTHKWLLVN-FDCSA 762 (764)
Q Consensus 703 ---l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~-gie~aDSit~d~HK~l~~P-~~~g~ 762 (764)
+++|+++|++||++||+|-+|.+.......+..... ++ ..|.++++ |.++.- +..|.
T Consensus 211 ~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~~~-~~di~t~s--K~l~~G~~r~G~ 272 (430)
T 3i4j_A 211 PGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGV-TPDIAVLG--KGLAAGYAPLAG 272 (430)
T ss_dssp TTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTTC-CCSEEEEC--GGGTTTSSCCEE
T ss_pred HHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhhhcCC-CCcEEEEc--ccccCCccccEE
Confidence 999999999999999999999875322111111111 33 35777765 987743 33444
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.8e-08 Score=108.80 Aligned_cols=222 Identities=9% Similarity=-0.061 Sum_probs=142.1
Q ss_pred eeeeHHHHHhh---cCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----C
Q psy13453 20 LIYESFKATHS---LSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----N 91 (764)
Q Consensus 20 ~~YSv~KAa~~---LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~ 91 (764)
.|.|+.+++.+ .|+.. +.||+++++++|+++|+++|+++ +-+++.+.+++++|.+.|++++++ +
T Consensus 97 ~~~~~~~~~~~~~~~g~~~---~~v~~~~~~~~d~~~l~~~i~~~-----~~~v~~~~~~nptG~~~~l~~i~~l~~~~~ 168 (382)
T 4eb5_A 97 EHMSVINPAKFLQKQGFEV---EYIPVGKYGEVDVSFIDQKLRDD-----TILVSVQHANNEIGTIQPVEEISEVLAGKA 168 (382)
T ss_dssp CCHHHHHHHHHHTTTTCEE---EEECBCTTSCBCHHHHHHHCCTT-----EEEEECCSBCTTTCBBCCHHHHHHHHTTSS
T ss_pred cchHHHHHHHHHHhCCcEE---EEeccCCCCccCHHHHHHHhcCC-----CeEEEEeccCCCccccCCHHHHHHHHHHCC
Confidence 46778777776 46544 99999999999999999998642 224467889999999999999876 8
Q ss_pred CCceeccccccc---------------------c----ceeeeecCCCccccccccccccCCcccC-CCCc-ccHHHHHH
Q psy13453 92 GPLKVGGVLRRV---------------------Y----SSCLVPRGQKSLRTTVLFHFLFQHWQIP-LGRR-FRALKLWM 144 (764)
Q Consensus 92 ~wlHVDa~l~~~---------------------y----~s~ll~rd~~~l~~~~s~~~d~~d~tle-~SRr-~~ALklWa 144 (764)
+| ++|++.... + .++++.++...+...+.. .. ...... ++-. .....+++
T Consensus 169 ~~-i~D~a~~~g~~~~~~~~~~~di~~~s~sK~~g~~g~G~~~~~~~~~l~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~ 245 (382)
T 4eb5_A 169 AL-HIDATASVGQIEVDVEKIGADMLTISSNDIYGPKGVGALWIRKEAKLQPVILG-GG-QENGLRSGSENVPSIVGFGK 245 (382)
T ss_dssp EE-EEECTTTBTTBCCCHHHHTCSEEEEETGGGTCCSSCEEEEEETTCCCCCSSCS-SC-TGGGTSCSCCCHHHHHHHHH
T ss_pred CE-EEEcchhcCCcccCccccCCCEEEeehHHhcCCCceEEEEEccccccCceecC-CC-ccccccCCCccHHHHHHHHH
Confidence 89 999964210 0 012222221101000000 00 000011 1111 11234455
Q ss_pred HHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC---ceeEEEEeeccccccccccccCccCCccHHHHHHHH
Q psy13453 145 TLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS---MGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYD 221 (764)
Q Consensus 145 tL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~---l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~ 221 (764)
++..+ .+++.++.++..++++++.+.|++.|+++++.++. .++++|++.+ .+ ..++.+
T Consensus 246 al~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~--~~~~~~ 306 (382)
T 4eb5_A 246 AAEIT-AMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSY----------------IE--GESIVL 306 (382)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETT----------------SC--HHHHHH
T ss_pred HHHHH-HHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeCC----------------cC--HHHHHH
Confidence 55544 45899999999999999999999999999876542 4577887531 11 135777
Q ss_pred HHHhcCcEEEEecee-------------------CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHc
Q psy13453 222 RIIARKVIYIVKGSF-------------------QDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLR 272 (764)
Q Consensus 222 ~L~~~G~~~vs~t~l-------------------~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~ 272 (764)
+|.+.|..+...... .+..++|++ ..+.+++++++.+++.|+++.+++.+
T Consensus 307 ~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~-~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (382)
T 4eb5_A 307 SLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLT-LGRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp HHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEE-CCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEE-CCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 777778744322110 124689997 55667899999999999999887654
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.1e-10 Score=127.75 Aligned_cols=172 Identities=12% Similarity=0.029 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCC
Q psy13453 560 CTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQ 639 (764)
Q Consensus 560 ~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~ 639 (764)
..++++.+.+|+.+.+|++.+ ....++|+|||+++..++.+.... +..|++..-
T Consensus 68 ~~~l~~~la~~l~~~~g~~~~-------~~~v~~~~g~~~a~~~~~~~~~~~-------------------gd~vl~~~p 121 (392)
T 3b1d_A 68 SDELLQAVLDWEKSEHQYSFD-------KEDIVFVEGVVPAISIAIQAFTKE-------------------GEAVLINSP 121 (392)
Confidence 677888889999888885432 135789999999998887765321 124677788
Q ss_pred cchhHHHHHHhCCCceEEEecC-C--CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc---cHHHHHHHHHhc
Q psy13453 640 SNSSVEKSAIIGDVPVRQLRSD-D--NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD---NLEELGPICQEY 713 (764)
Q Consensus 640 aH~Sv~kAa~~lGl~v~~Vp~d-~--~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD---pl~eIa~i~~~~ 713 (764)
+|.+...++...|.+++.+|.+ + ++.+|+++|++++++. .+-+|+.+..++.+|.+- ++++|+++|++|
T Consensus 122 ~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~ 196 (392)
T 3b1d_A 122 VYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVEN-----DVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKH 196 (392)
Confidence 8988888888899999999985 3 3569999999998632 133555677788899885 499999999999
Q ss_pred CCEEEEeccccccccccchhhhhhcCC----CcccEEEEcCCccCC-CCcCceee
Q psy13453 714 NIWLHVDAAYAGSALLLPEYAHLKRGL----EYVDSFDFNTHKWLL-VNFDCSAM 763 (764)
Q Consensus 714 glwLHVDaA~Gg~~l~~~~~r~~l~gi----e~aDSit~d~HK~l~-~P~~~g~l 763 (764)
|+++++|.+|+.+..--..... +.++ ...+-+..+++|+++ ..+.+|.+
T Consensus 197 ~~~li~De~~~~~~~~g~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~ 250 (392)
T 3b1d_A 197 HVILVSDEIHQDLTLFGHEHVS-FNTVSPDFKDFALVLSSATKTFNIAGTKNSYA 250 (392)
Confidence 9999999999875432111111 1111 122456778999987 33345543
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=98.91 E-value=5.4e-09 Score=120.19 Aligned_cols=191 Identities=8% Similarity=0.031 Sum_probs=132.0
Q ss_pred hHHHHHHHHHHhhcccCcccc-CCchHHHHHHHHHHHHHHHc-C-CCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHH
Q psy13453 535 YPSIVGDMLSGAFGLIGFSWL-SSPACTELEVLVMNWLGKAL-G-LPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRK 611 (764)
Q Consensus 535 ~~~~lad~l~~~lN~n~~~~~-~sp~~t~lE~~v~~~la~ll-G-~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~ 611 (764)
++.++.++....... .|. .......+++.+.+++.+.. + .+.. .....++|+|||+++.+++.+...+
T Consensus 117 ~~~~v~a~~~~~~~~---~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~------~~~~i~~t~G~t~al~~~~~~l~~~ 187 (533)
T 3f6t_A 117 RDKVVAEWVNGAVAN---NYPVPDRCLVNTEKIINYFLQELSYKDANLA------EQTDLFPTEGGTAAIVYAFHSLAEN 187 (533)
T ss_dssp HHHHHHHHHHHHHTC---SCCSSSSCCHHHHHHHHHHHHHHHTTTCCCG------GGEEEEEEEHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHhC---CCCCCcccHHHHHHHHHHHHHHhcCCCCCCC------CcceEEEECCHHHHHHHHHHHhhhh
Confidence 456666665555432 232 34456789999999997773 3 3221 0135789999999998887653222
Q ss_pred HhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecC----CCCcccHHHHHHHHHHhhhcCCCceE
Q psy13453 612 MINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSD----DNGVLRGDALLTAVKEDLAKGLIPCC 687 (764)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d----~~g~md~~~Le~~I~~~~~~G~~p~~ 687 (764)
.+- .+...|+++.-+|.+...++...|.+++.+|++ +++.+|+++|++++.+. +-+
T Consensus 188 ~l~--------------~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~~------~k~ 247 (533)
T 3f6t_A 188 HLL--------------KKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDPS------IKA 247 (533)
T ss_dssp TSS--------------CTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCTT------EEE
T ss_pred hcc--------------CCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCCC------CeE
Confidence 111 122368889999999998888899999999885 46889999999988543 447
Q ss_pred EEEeeccCCccccccHH---HHHHHHH-hcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 688 LIATLGTTGTCAFDNLE---ELGPICQ-EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 688 VvataGTT~~GaiDpl~---eIa~i~~-~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
|+.+..++.+|.+-+.+ +|+++|+ +||+++++|.+|+.+..-........ ...+-+..+++|.++.|
T Consensus 248 v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~---~~~~i~~~S~SK~~g~~ 318 (533)
T 3f6t_A 248 LIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVV---PYNTMLVYSYSKLFGCT 318 (533)
T ss_dssp EEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHS---GGGEEEEEESHHHHTCG
T ss_pred EEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcC---CCCEEEEecCcccCCCc
Confidence 77778889999995555 8888888 68999999999997543222222211 12357889999988744
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=98.91 E-value=7.9e-09 Score=112.45 Aligned_cols=220 Identities=14% Similarity=0.063 Sum_probs=148.1
Q ss_pred eeee--HHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CC
Q psy13453 20 LIYE--SFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NG 92 (764)
Q Consensus 20 ~~YS--v~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~ 92 (764)
.|++ +.++++..|... +.||+++++.+|+++|+++|++. ++-+++.+.+++++|.+.|++++++ ++
T Consensus 118 ~~~~~~~~~~~~~~g~~~---~~v~~~~~~~~d~~~l~~~l~~~----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~ 190 (393)
T 1vjo_A 118 GYFGNRLVDMAGRYGADV---RTISKPWGEVFSLEELRTALETH----RPAILALVHAETSTGARQPLEGVGELCREFGT 190 (393)
T ss_dssp SHHHHHHHHHHHHTTCEE---EEEECCTTCCCCHHHHHHHHHHH----CCSEEEEESEETTTTEECCCTTHHHHHHHHTC
T ss_pred ChhHHHHHHHHHHcCCce---EEEecCCCCCCCHHHHHHHHhhC----CceEEEEeccCCCcceeccHHHHHHHHHHcCC
Confidence 3556 889999999876 99999998999999999999873 1235567888999999999999886 89
Q ss_pred Cceecccccc--------------------c-c-----ceeeeecCCCcccccccc-ccccCCc--------------cc
Q psy13453 93 PLKVGGVLRR--------------------V-Y-----SSCLVPRGQKSLRTTVLF-HFLFQHW--------------QI 131 (764)
Q Consensus 93 wlHVDa~l~~--------------------~-y-----~s~ll~rd~~~l~~~~s~-~~d~~d~--------------tl 131 (764)
|+++|++... + + .++++.++. .+. .+.. ......+ ..
T Consensus 191 ~li~Dea~~~g~~~~~~~~~~~di~~~s~sK~l~~~~~~G~l~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (393)
T 1vjo_A 191 LLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSR-AIE-KLQRRRTKVANWYLDMNLLGKYWGSERV 268 (393)
T ss_dssp EEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHH-HHH-HHHTCSSCCSCSTTCHHHHHHHHSTTCC
T ss_pred EEEEECCccccCcCCcccccCccEEEEcCcccccCCCceEEEEECHH-HHH-HHhccCCCCCceecCcHhhhhhhccCCC
Confidence 9999996430 0 0 012222111 000 0000 0000011 11
Q ss_pred CC-CC-cccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC---ceeEEEEeecccccccccccc
Q psy13453 132 PL-GR-RFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS---MGLVCFRLKVRFWDKLDNLFG 206 (764)
Q Consensus 132 e~-SR-r~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~---l~iV~Fry~P~~~~~~~~~~~ 206 (764)
.+ +. ......++++++.+..+++.++.++..++++++.+.|++. +++++.+.. .++++|++. .
T Consensus 269 ~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~-~---------- 336 (393)
T 1vjo_A 269 YHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI-GLSLHVEKEYRLPTLTTVCIP-D---------- 336 (393)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECC-T----------
T ss_pred CCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc-CCcccCCccccCCcEEEEEcC-C----------
Confidence 11 22 2223356777877767788999999999999999999997 888766432 356777652 1
Q ss_pred CccCCccHHHHHHHHHHHhc-CcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 207 TISFGDNDLNKAVYDRIIAR-KVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 207 ~~~~~~d~~n~~L~~~L~~~-G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
+.+ ..++.++|.++ |..+.......+..++|+++....+++++++.+++.|+++
T Consensus 337 ----~~~--~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~~~ 391 (393)
T 1vjo_A 337 ----GVD--GKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQV 391 (393)
T ss_dssp ----TCC--HHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHH
T ss_pred ----CCC--HHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHHHH
Confidence 111 24688888887 8765544433345789998777788899999999999875
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.7e-08 Score=112.73 Aligned_cols=169 Identities=15% Similarity=0.097 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccC-ceEEEecCCc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRN-KLVAYTSDQS 640 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~-~~vi~~S~~a 640 (764)
....++.+.+++++|.+ ..+||+|||+||..|+.++|.......+.. .+ +-+|+....-
T Consensus 107 ~~~~~l~~~la~~~g~~-----------~v~~~~sGseA~~~al~~a~~~~~~~~g~~---------~gr~~vi~~~~~y 166 (433)
T 1z7d_A 107 VPLGICERYLTNLLGYD-----------KVLMMNTGAEANETAYKLCRKWGYEVKKIP---------ENMAKIVVCKNNF 166 (433)
T ss_dssp HHHHHHHHHHHHHHTCS-----------EEEEESSHHHHHHHHHHHHHHHHHHTSCCC---------TTCCEEEEETTC-
T ss_pred HHHHHHHHHHHhhcCCC-----------eEEEeCCHHHHHHHHHHHHHHHhhhccCCC---------CCCCeEEEEeCCc
Confidence 34455556777777642 478999999999999999885432110000 01 2355555567
Q ss_pred chhHHHHHHhCC------------CceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc----cHH
Q psy13453 641 NSSVEKSAIIGD------------VPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD----NLE 704 (764)
Q Consensus 641 H~Sv~kAa~~lG------------l~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD----pl~ 704 (764)
|.+...++.+.| ..+..+|.+ |+++|+++|+. ..+.+|++.--...+|.+- +++
T Consensus 167 hg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~-----d~~~le~~l~~-----~~~~~vi~ep~~~~~G~~~~~~~~l~ 236 (433)
T 1z7d_A 167 SGRTLGCISASTTKKCTSNFGPFAPQFSKVPYD-----DLEALEEELKD-----PNVCAFIVEPIQGEAGVIVPSDNYLQ 236 (433)
T ss_dssp -------------------------CEEEECTT-----CHHHHHHHHTS-----TTEEEEEECSSBSTTTSBCCCTTHHH
T ss_pred CCcchhhhcccCCccccccCCCCCCCeEEeCCC-----CHHHHHHHhCC-----CCEEEEEEECCCCCCCccCCCHHHHH
Confidence 776665555544 245556542 89999999851 1244666655445578764 899
Q ss_pred HHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 705 ELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 705 eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
+|+++|++||++|++|.+|.++......+.....|+ ..|.+| +.|+++.. +..|++
T Consensus 237 ~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~-~~di~t--~sK~l~~G~~~~G~v 293 (433)
T 1z7d_A 237 GVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNV-KPDVIL--LGKALSGGHYPISAV 293 (433)
T ss_dssp HHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEE--ECGGGGTTSSCCEEE
T ss_pred HHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCC-CCCEEE--ECccccCCCCCeEEE
Confidence 999999999999999999986322111111112233 468765 56998854 456665
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=98.91 E-value=4.5e-08 Score=108.53 Aligned_cols=164 Identities=14% Similarity=0.093 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
....++.++++++++- . ...+||+|||+||..|+.+||... + ++.+|......|
T Consensus 93 ~~~~~la~~l~~~~~~-~---------~~v~~~~sGsea~~~al~~a~~~~-~---------------~~~ii~~~~~yh 146 (429)
T 4e77_A 93 EMEVKMAQLVTDLVPT-M---------DMVRMVNSGTEATMSAIRLARGYT-G---------------RDKIIKFEGCYH 146 (429)
T ss_dssp HHHHHHHHHHHHHSTT-C---------SEEEEESSHHHHHHHHHHHHHHHH-C---------------CCEEEEETTCCC
T ss_pred HHHHHHHHHHHhhCCC-C---------CEEEEeCcHHHHHHHHHHHHHHhh-C---------------CCEEEEEcCccC
Confidence 4556667788888862 2 257999999999999999887542 1 123455555666
Q ss_pred hhHHHHHHhCC-------------C------ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc
Q psy13453 642 SSVEKSAIIGD-------------V------PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN 702 (764)
Q Consensus 642 ~Sv~kAa~~lG-------------l------~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp 702 (764)
-....+....| + .+..+|.+ |+++|+++|++. +..+.+|++.--+...|.+.+
T Consensus 147 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~---~~~~~~vi~ep~~~~~g~~~~ 218 (429)
T 4e77_A 147 GHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYN-----DLASVRQAFEQY---PQEVACIIVEPVAGNMNCIPP 218 (429)
T ss_dssp C------------------CCCTTSCGGGGTTEEEECTT-----CHHHHHHHHHHS---TTTEEEEEECSSBCTTSCBCC
T ss_pred CCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCC-----CHHHHHHHHHhc---CCCEEEEEECCccCCCCCcCC
Confidence 55443222111 1 12222221 799999999753 123456666655566788887
Q ss_pred ----HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 703 ----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 703 ----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
+++|+++|++||++|++|.+|+++ .....+.....|+ ..|-++++ |.++..+..|++
T Consensus 219 ~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~~~~~~~~~~-~pdi~t~s--K~~~~G~~~G~~ 279 (429)
T 4e77_A 219 LPEFLPGLRALCDEFGALLIIDEVMTGF-RVALAGAQDYYHV-IPDLTCLG--KIIGGGMPVGAF 279 (429)
T ss_dssp CTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBTTCHHHHTTC-CCSEEEEE--GGGGTTSCCEEE
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccccCc-ccCcchHHHhcCC-CCCeeeec--ccccCCCCeEEE
Confidence 999999999999999999999965 3222222222344 34766555 988865666654
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=7.5e-09 Score=114.64 Aligned_cols=166 Identities=13% Similarity=0.007 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCC
Q psy13453 560 CTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQ 639 (764)
Q Consensus 560 ~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~ 639 (764)
......++.+++++.++ +. ...+||+|||+||..|+++||... . ++-+|+....
T Consensus 90 ~~~~~~~la~~l~~~~~-~~---------~~v~~~~ggsea~~~al~~a~~~~--~--------------~~~vi~~~~~ 143 (427)
T 3fq8_A 90 PCALENVLAEMVNDAVP-SI---------EMVRFVNSGTEACMAVLRIMRAYT--G--------------RDKIIKFEGC 143 (427)
T ss_dssp CCHHHHHHHHHHHHHST-TC---------SEEEEESSHHHHHHHHHHHHHHHH--C--------------CCEEEEEETC
T ss_pred CCHHHHHHHHHHHHhCC-CC---------CEEEEeCCHHHHHHHHHHHHHHhh--C--------------CCEEEEECCC
Confidence 34566777889999887 22 357999999999999999887542 1 1224444445
Q ss_pred cchhHHHHHHhCCC-------------------ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc
Q psy13453 640 SNSSVEKSAIIGDV-------------------PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF 700 (764)
Q Consensus 640 aH~Sv~kAa~~lGl-------------------~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai 700 (764)
-|.+...+....|. .+..+|.+ |+++|++++++.. ..+.+|++...++.+|.+
T Consensus 144 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~---~~~~~vi~~p~~~~~G~~ 215 (427)
T 3fq8_A 144 YHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN-----DLEAVKALFAENP---GEIAGVILEPIVGNSGFI 215 (427)
T ss_dssp CCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETT-----CHHHHHHHHHHST---TTEEEEEECSSBCTTSCB
T ss_pred cCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCC-----CHHHHHHHHHhCC---CCEEEEEEcCCcCCCCCc
Confidence 55333222111111 13444432 8999999997632 235677777777778999
Q ss_pred cc----HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 701 DN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 701 Dp----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
-+ +++|+++|++||++|++|.+|+++ .....+.....++ ..|-++++ |.++.-+..|++
T Consensus 216 ~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~-~~di~t~s--K~~~~G~~~G~~ 278 (427)
T 3fq8_A 216 VPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGGVQEKFGV-TPDLTTLG--KIIGGGLPVGAY 278 (427)
T ss_dssp CCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTTHHHHHTTC-CCSEEEEC--GGGGTTSSCEEE
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchhhHhcCC-CCChhhhh--hhhhCCcceEEE
Confidence 88 999999999999999999999965 3222222223344 35777766 988754446654
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.7e-08 Score=110.98 Aligned_cols=177 Identities=13% Similarity=0.043 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcch
Q psy13453 563 LEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNS 642 (764)
Q Consensus 563 lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~ 642 (764)
...++.+.++++++.+. ...+||+|||+||..++.+++.....+ +.. .++-+|+.+...|.
T Consensus 94 ~~~~l~~~la~~~~~~~---------~~v~~~~ggsea~~~al~~~~~~~~~~-g~~---------~~~~vi~~~~~yhg 154 (449)
T 3a8u_X 94 LSFQLAEKITDLTPGNL---------NHVFFTDSGSECALTAVKMVRAYWRLK-GQA---------TKTKMIGRARGYHG 154 (449)
T ss_dssp HHHHHHHHHHTTSSTTE---------EEEEEESSHHHHHHHHHHHHHHHHHHT-TCT---------TCCEEEEETTCCCC
T ss_pred HHHHHHHHHHHhCCCCC---------CEEEEcCcHHHHHHHHHHHHHHHHHhc-CCC---------CCCEEEEECCCcCC
Confidence 34456677777776543 257899999999999999887643211 000 01335666778887
Q ss_pred hHHHHHHhCCC------------ceEEEecCCCCc-----cc--------HHHHHHHHHHhhhcCCCceEEEEeeccCCc
Q psy13453 643 SVEKSAIIGDV------------PVRQLRSDDNGV-----LR--------GDALLTAVKEDLAKGLIPCCLIATLGTTGT 697 (764)
Q Consensus 643 Sv~kAa~~lGl------------~v~~Vp~d~~g~-----md--------~~~Le~~I~~~~~~G~~p~~VvataGTT~~ 697 (764)
+...++...|. .++.|+++..++ +| +++|+++|++.. ...+.+|+++--.+.+
T Consensus 155 ~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~--~~~~~~vi~~p~~~~t 232 (449)
T 3a8u_X 155 VNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHD--ASNIAAVFVEPLAGSA 232 (449)
T ss_dssp SSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHC--GGGEEEEEECSSBTTT
T ss_pred CChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcC--CCCEEEEEEcCccCCC
Confidence 76666666542 456676543222 56 999999997531 0124566665545568
Q ss_pred ccccc----HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 698 CAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 698 GaiDp----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
|.+-| +++|+++|++||++|++|.+|.++...-..+.....++ ..|.+++ .|+++.- +..|++
T Consensus 233 G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~-~~di~s~--sK~l~~G~~~~G~~ 300 (449)
T 3a8u_X 233 GVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFGV-TPDLMCI--AKQVTNGAIPMGAV 300 (449)
T ss_dssp TCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTC-CCSEEEE--CGGGGTTSSCCEEE
T ss_pred CCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcchhhhhcCC-CCCEEEE--cccccCCCCceEEE
Confidence 98877 99999999999999999999965322111111112233 3576655 5988742 235654
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.6e-08 Score=108.18 Aligned_cols=218 Identities=12% Similarity=0.047 Sum_probs=142.9
Q ss_pred HHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCceecc
Q psy13453 24 SFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKVGG 98 (764)
Q Consensus 24 v~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHVDa 98 (764)
+..++...|... +.||+++++.+|+++|+++|++. +-+++.+.+++++|.+.|++++++ ++++++|+
T Consensus 130 ~~~~~~~~g~~~---~~~~~~~~~~~d~~~l~~~l~~~-----~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~ 201 (406)
T 1kmj_A 130 WQMLCARVGAEL---RVIPLNPDGTLQLETLPTLFDEK-----TRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDG 201 (406)
T ss_dssp HHHHHHHHTCEE---EEECBCTTSCBCGGGHHHHCCTT-----EEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHhCCCEE---EEEecCCCCCcCHHHHHHHhccC-----CeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEc
Confidence 345678888876 99999988999999999999642 224467788999999999999876 88999999
Q ss_pred cccc--------------------c----cc-eeeeecCCCccccccccccccC--------C---------cccC-CCC
Q psy13453 99 VLRR--------------------V----YS-SCLVPRGQKSLRTTVLFHFLFQ--------H---------WQIP-LGR 135 (764)
Q Consensus 99 ~l~~--------------------~----y~-s~ll~rd~~~l~~~~s~~~d~~--------d---------~tle-~SR 135 (764)
+... + .+ ++++.++ +... .+......+ . +.++ ++.
T Consensus 202 ~~~~g~~~~~~~~~~~d~~~~s~~K~~g~~G~G~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (406)
T 1kmj_A 202 AQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKE-ALLQ-EMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTP 279 (406)
T ss_dssp TTTTTTSCCCHHHHTCSEEEEEGGGTTSCTTCEEEEECH-HHHH-HCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSC
T ss_pred hhhcCCCCCcccccCCCEEEEEchhccCCCCcEEEEEeH-HHHh-hcCCcccCCCceeecccccccccCCCchhccCCCC
Confidence 5311 0 01 2332221 1000 000000000 0 0111 112
Q ss_pred cc-cHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC-CceeEEEEeeccccccccccccCccCCcc
Q psy13453 136 RF-RALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPP-SMGLVCFRLKVRFWDKLDNLFGTISFGDN 213 (764)
Q Consensus 136 r~-~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P-~l~iV~Fry~P~~~~~~~~~~~~~~~~~d 213 (764)
.. .++.+.+++..+..+++.++.++..++++++.+.|++.|+++++.++ ..++++|++. +.+
T Consensus 280 ~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~----------------~~~ 343 (406)
T 1kmj_A 280 NTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLG----------------KHH 343 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEEEET----------------TCC
T ss_pred CHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcCCEEEEEEC----------------CCC
Confidence 11 12234466677766788889999999999999999999999987653 6778888642 111
Q ss_pred HHHHHHHHHHHhcCcEEEEece--------eCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 214 DLNKAVYDRIIARKVIYIVKGS--------FQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 214 ~~n~~L~~~L~~~G~~~vs~t~--------l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
..++.+.|.+.|..+..... +....++|+++. ..+++++++.+++.|+++.+.+
T Consensus 344 --~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~-~~~t~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 344 --AYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLA-MYNTHEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp --HHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECC-TTCCHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHhhCCcEEEeccccchHHHHhcCCCCeEEEEee-cCCCHHHHHHHHHHHHHHHHhh
Confidence 23577888888876543321 222468999766 4568999999999999887653
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.2e-08 Score=109.19 Aligned_cols=216 Identities=9% Similarity=-0.025 Sum_probs=142.5
Q ss_pred eee--HHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc------CC
Q psy13453 21 IYE--SFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS------NG 92 (764)
Q Consensus 21 ~YS--v~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~------~~ 92 (764)
+|| +...+...|... +.||++.++.+|+++|+ +++ ++-+++.+.+++++|.+.|++++++ ++
T Consensus 93 ~~~~~~~~~~~~~g~~~---~~v~~~~~~~~d~~~l~--~~~-----~~~~v~~~~~~nptG~~~~l~~i~~la~~~p~~ 162 (362)
T 3ffr_A 93 SFSKRFYEFAGELGREA---YKEEAAFGKGFYPADIT--VPA-----DAEIICLTHNETSSGVSMPVEDINTFRDKNKDA 162 (362)
T ss_dssp HHHHHHHHHHHHTTCEE---EEEECCTTCCCCGGGCC--CCT-----TCCEEEEESEETTTTEECCHHHHTTSGGGSTTS
T ss_pred HHHHHHHHHHHHhCCCe---EEEecCCCCCCCHHHHh--ccC-----CccEEEEEcCCCCcceeCCHHHHHHHHHhCCCC
Confidence 566 445677788766 99999989999999998 322 2335567788999999999999775 68
Q ss_pred Cceeccccccc---c----ceeeeecCCCccc---c-cc-ccccc-----------------cCC----------cccCC
Q psy13453 93 PLKVGGVLRRV---Y----SSCLVPRGQKSLR---T-TV-LFHFL-----------------FQH----------WQIPL 133 (764)
Q Consensus 93 wlHVDa~l~~~---y----~s~ll~rd~~~l~---~-~~-s~~~d-----------------~~d----------~tle~ 133 (764)
|+++|++.... + ..++...-.+.+. + .+ ....+ +.+ ....+
T Consensus 163 ~li~D~a~~~~~~~~~~~~~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~ 242 (362)
T 3ffr_A 163 LIFVDAVSSLPYPKFDWTKIDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPE 242 (362)
T ss_dssp EEEEECTTTTTSSCCCTTSCSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSS
T ss_pred EEEEecccccCCcccChhHCcEEEEecccccCCCCceEEEEECHHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCC
Confidence 99999853110 0 1111111111111 0 00 00000 000 01122
Q ss_pred CC-cccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCC-C---CceeEEEEeeccccccccccccCc
Q psy13453 134 GR-RFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCP-P---SMGLVCFRLKVRFWDKLDNLFGTI 208 (764)
Q Consensus 134 SR-r~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~-P---~l~iV~Fry~P~~~~~~~~~~~~~ 208 (764)
+. ......++++++.+..+|+.++.++..++++++.+.|+++|+++++.+ + ...+++|+..
T Consensus 243 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~-------------- 308 (362)
T 3ffr_A 243 TPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTT-------------- 308 (362)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEES--------------
T ss_pred CchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEEEecC--------------
Confidence 22 233346678888888888999999999999999999999999999862 2 2456777653
Q ss_pred cCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 209 SFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 209 ~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
+ -..++.++|.++|..........+..++|+++.. .+++++++.+++.|+++
T Consensus 309 --~---~~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~~~-~~~~e~i~~l~~~l~~~ 360 (362)
T 3ffr_A 309 --M---LPGEINKILEPFDMAVGAGYGSKKETQIRIANFP-AHSLEQVHKLVQTLKEK 360 (362)
T ss_dssp --S---CHHHHHHHHGGGTEEEEECSGGGTTTEEEEECCT-TSCHHHHHHHHHHHHHH
T ss_pred --C---CHHHHHHHHHHCCeEEecCccccCCCEEEEECCC-CCCHHHHHHHHHHHHHH
Confidence 1 1257888999998765543333345689998766 56789999999999875
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=98.89 E-value=5.8e-08 Score=106.67 Aligned_cols=183 Identities=14% Similarity=0.019 Sum_probs=119.1
Q ss_pred ccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcE--EEeCChHHHHHHHHHHHHHHHhhhhccCCCCCcccccc
Q psy13453 552 FSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGG--IIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIR 629 (764)
Q Consensus 552 ~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~G--vfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~ 629 (764)
..|...+...++.+.+.+|+. |...... ..... ..|.|||+++..+..+++... .
T Consensus 73 ~~y~~~~g~~~lr~~ia~~~~---~~~~~~~----~~~~i~~~~~~~g~ga~~~~~~~~~~~~----------------~ 129 (409)
T 4eu1_A 73 MDYAPVTGIASFVEEAQKLCF---GPTCAAL----RDGRIASCQTLGGTGALRIGGDLLNRFV----------------A 129 (409)
T ss_dssp CCCCCTTCCHHHHHHHHHHHH---CSSCHHH----HTTCEEEEEESHHHHHHHHHHHHGGGTS----------------S
T ss_pred ccCCCCCCcHHHHHHHHHHHc---CCCchhh----ccCceeeeecccchHHHHHHHHHHHHhc----------------C
Confidence 444444555677777777773 4321000 00123 358999999866544332110 1
Q ss_pred CceEEEecCCcchhHHHHHHhCCCceEEEec--CCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc---HH
Q psy13453 630 NKLVAYTSDQSNSSVEKSAIIGDVPVRQLRS--DDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN---LE 704 (764)
Q Consensus 630 ~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~--d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp---l~ 704 (764)
+...|++..-+|.+....++..|.+++.+|. ++++.+|+++|++++++.. ..+.+++.+..++.+|.+-+ ++
T Consensus 130 ~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~---~~~~~i~~~~p~NPtG~~~~~~~l~ 206 (409)
T 4eu1_A 130 NCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAP---EGSVILVHACAHNPTGVDPTHDDWR 206 (409)
T ss_dssp SCCEEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHSC---TTCEEEEESSSCTTTCCCCCHHHHH
T ss_pred CCCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhCC---CCcEEEEECCCCCCCCCCCCHHHHH
Confidence 1235788889999999999999999999998 3568999999999997531 13456666778899998855 66
Q ss_pred HHHHHHHhcCCEEEEeccccccccccc-----hhhhhhcCCCccc-EEEEcCCccCCCC-cCcee
Q psy13453 705 ELGPICQEYNIWLHVDAAYAGSALLLP-----EYAHLKRGLEYVD-SFDFNTHKWLLVN-FDCSA 762 (764)
Q Consensus 705 eIa~i~~~~glwLHVDaA~Gg~~l~~~-----~~r~~l~gie~aD-Sit~d~HK~l~~P-~~~g~ 762 (764)
+|+++|++||+|+++|.+|+.+..--. ...... +. ..+ -+..+++|.++.| ..+|.
T Consensus 207 ~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~-~~-~~~~i~~~S~SK~~g~~G~riG~ 269 (409)
T 4eu1_A 207 QVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLV-DM-VPNLIVAQSFSKNFGLYGHRCGA 269 (409)
T ss_dssp HHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHH-TT-SSCCEEEEECTTTSSCGGGCCEE
T ss_pred HHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHH-hh-CCcEEEEecCcccccCccCCceE
Confidence 699999999999999999987543210 111111 11 123 3455888988754 23444
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.5e-08 Score=111.58 Aligned_cols=168 Identities=11% Similarity=-0.023 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchh
Q psy13453 564 EVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSS 643 (764)
Q Consensus 564 E~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~S 643 (764)
..++.+++++++|.+ ..+||+|||+||..|+.++|.......+.. + .++-+|+....-|.+
T Consensus 120 ~~~l~~~la~~~g~~-----------~v~~~~sGseA~~~al~~~~~~~~~~~g~~-~-------g~~~vi~~~~~yhg~ 180 (439)
T 2oat_A 120 LGEYEEYITKLFNYH-----------KVLPMNTGVEAGETACKLARKWGYTVKGIQ-K-------YKAKIVFAAGNFWGR 180 (439)
T ss_dssp HHHHHHHHHHHHTCS-----------EEEEESSHHHHHHHHHHHHHHHHHHTTCCC-T-------TCCEEEEETTCCCCS
T ss_pred HHHHHHHHHHhcCCC-----------EEEEeCCHHHHHHHHHHHHHHHhhhccCCC-C-------CCCeEEEEcCCCCCC
Confidence 344455666666632 478999999999999999886432110000 0 012356666677877
Q ss_pred HHHHHHhCC------------CceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc----cHHHHH
Q psy13453 644 VEKSAIIGD------------VPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD----NLEELG 707 (764)
Q Consensus 644 v~kAa~~lG------------l~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD----pl~eIa 707 (764)
...++...| ..+..+|.+ |+++|+++|+. ..+.+|++.--...+|.+- ++++|+
T Consensus 181 ~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~-----d~~~le~~l~~-----~~~~~vi~ep~~~~~G~~~~~~~~l~~l~ 250 (439)
T 2oat_A 181 TLSAISSSTDPTSYDGFGPFMPGFDIIPYN-----DLPALERALQD-----PNVAAFMVEPIQGEAGVVVPDPGYLMGVR 250 (439)
T ss_dssp SHHHHTTCCCHHHHTTSCSCCTTEEEECSS-----CHHHHHHHTTS-----TTEEEEEECSSBTTTTSBCCCTTHHHHHH
T ss_pred CHhHhhcCCChhcccCCCCCCCCeEEeCCC-----CHHHHHHHhCC-----CCEEEEEEECCCCCCCCcCCCHHHHHHHH
Confidence 776666655 356677653 79999998852 1244666555445578665 899999
Q ss_pred HHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 708 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 708 ~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
++|++||++|++|.+|.++......+.....|+ ..|.+ +++|+++.. +..|++
T Consensus 251 ~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~-~~Di~--t~sK~l~~G~~~~G~v 304 (439)
T 2oat_A 251 ELCTRHQVLFIADEIQTGLARTGRWLAVDYENV-RPDIV--LLGKALSGGLYPVSAV 304 (439)
T ss_dssp HHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEE--EECGGGGTTSSCCEEE
T ss_pred HHHHHcCCEEEEeccccCCccCCcchhHHHhCC-CCcEE--EecccccCCCCCeEEE
Confidence 999999999999999976321111111112244 45866 556998865 456665
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.1e-08 Score=108.96 Aligned_cols=224 Identities=14% Similarity=0.059 Sum_probs=146.3
Q ss_pred eeeH--HHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCC
Q psy13453 21 IYES--FKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGP 93 (764)
Q Consensus 21 ~YSv--~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~w 93 (764)
|+|. .+.+...|... +.||+++++++|+++|+++|++.. ++-+++.+.+++++|.+.|++++.+ ++|
T Consensus 93 ~~~~~~~~~~~~~g~~~---~~v~~~~~~~~d~~~l~~~l~~~~---~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~ 166 (392)
T 2z9v_A 93 VYGKGFGYWAKRYSPHL---LEIEVPYNEAIDPQAVADMLKAHP---EITVVSVCHHDTPSGTINPIDAIGALVSAHGAY 166 (392)
T ss_dssp HHHHHHHHHHHHHCSCE---EEEECCTTSCCCHHHHHHHHHHCT---TCCEEEEESEEGGGTEECCHHHHHHHHHHTTCE
T ss_pred cccHHHHHHHHHcCCce---EEeeCCCCCCCCHHHHHHHHhcCC---CCcEEEEeccCCCCceeccHHHHHHHHHHcCCe
Confidence 5554 35556678865 999999889999999999997521 2234567889999999999999876 899
Q ss_pred ceecccccc--------------------c--cc----eeeeecCCCcccccccc-c--c--ccCC-------c----cc
Q psy13453 94 LKVGGVLRR--------------------V--YS----SCLVPRGQKSLRTTVLF-H--F--LFQH-------W----QI 131 (764)
Q Consensus 94 lHVDa~l~~--------------------~--y~----s~ll~rd~~~l~~~~s~-~--~--d~~d-------~----tl 131 (764)
+++|++... + ++ ++++.++. ... .+.. . . .+.+ + ..
T Consensus 167 li~D~a~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~~-~~~-~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 244 (392)
T 2z9v_A 167 LIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSER-AWA-KMKANPLAPRASMLSIVDWENAWSRDKPF 244 (392)
T ss_dssp EEEECTTTBTTBSCCGGGGTCSEEEECSSSTTCCCSCCEEEEECHH-HHH-HHHTCTTSCCSSTTCSGGGTTTTSTTSCC
T ss_pred EEEEcccccCCcccccccccceEEEecCcccccCCCceeEEEECHH-HHH-HhhhccCCCCceeccHHHHHhhhcccCCC
Confidence 999996321 1 00 12222211 000 0000 0 0 0000 0 01
Q ss_pred CCCCccc-HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC----CceeEEEEeecccccccccccc
Q psy13453 132 PLGRRFR-ALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPP----SMGLVCFRLKVRFWDKLDNLFG 206 (764)
Q Consensus 132 e~SRr~~-ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P----~l~iV~Fry~P~~~~~~~~~~~ 206 (764)
.++.... .+.+++++..+...|+.++.++..++++++.+.|++. +++++.++ ..++++|++. .
T Consensus 245 ~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-~---------- 312 (392)
T 2z9v_A 245 PFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAM-GLSVWAASDSIASPTTTAVRTP-D---------- 312 (392)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSSSGGGBCTTEEEEECC-T----------
T ss_pred CCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-CCeeccCCccccCCceEEEECC-C----------
Confidence 1122111 2355777887777779999999999999999999987 88877633 3567788752 1
Q ss_pred CccCCccHHHHHHHHHHHhc-CcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 207 TISFGDNDLNKAVYDRIIAR-KVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 207 ~~~~~~d~~n~~L~~~L~~~-G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
+.+ ..++.++|.++ |..+.......+..++|+++..+.+++++++.+++.|+++.+++
T Consensus 313 ----~~~--~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~ 371 (392)
T 2z9v_A 313 ----GVD--EKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAALTALGGAMNAA 371 (392)
T ss_dssp ----TCC--HHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred ----CCC--HHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHHHHHHHHHHHHHHHHc
Confidence 111 24678888887 87654433223456899986666789999999999999887654
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=98.87 E-value=2.3e-08 Score=110.92 Aligned_cols=163 Identities=13% Similarity=0.051 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcch
Q psy13453 563 LEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNS 642 (764)
Q Consensus 563 lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~ 642 (764)
...++.+++++.++ +. ...+||+|||+||..|+.+++... + ++-+|.....-|.
T Consensus 96 ~~~~l~~~la~~~~-~~---------~~v~~~~sGsea~~~ai~~a~~~~-~---------------~~~vi~~~~~yhg 149 (434)
T 3l44_A 96 LEVKFAKMLKEAMP-AL---------DKVRFVNSGTEAVMTTIRVARAYT-G---------------RTKIMKFAGCYHG 149 (434)
T ss_dssp HHHHHHHHHHHHCT-TC---------SEEEEESSHHHHHHHHHHHHHHHH-C---------------CCEEEEETTCCCC
T ss_pred HHHHHHHHHHHhCC-CC---------CEEEEeCchHHHHHHHHHHHHHhh-C---------------CCEEEEEcCccCC
Confidence 44556667888875 22 257999999999999999887642 1 1224444555554
Q ss_pred hHHHHHHhCCC-------------------ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc-
Q psy13453 643 SVEKSAIIGDV-------------------PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN- 702 (764)
Q Consensus 643 Sv~kAa~~lGl-------------------~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp- 702 (764)
+...+....|. .+..+|.+ |+++|+++|++... .+.+|++.-.++.+|.+-+
T Consensus 150 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~---~~~~vi~ep~~~~~G~~~~~ 221 (434)
T 3l44_A 150 HSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFN-----NVETLKEALDKWGH---EVAAILVEPIVGNFGIVEPK 221 (434)
T ss_dssp SSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTT-----CHHHHHHHHHHHGG---GEEEEEECSSBCTTSCBCCC
T ss_pred CcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcc-----cHHHHHHHHHhCCC---CEEEEEEcCCCCCCCCccCC
Confidence 33322222221 23333322 79999999976321 2456666666667788887
Q ss_pred ---HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 703 ---LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 703 ---l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
+++|+++|++||++||+|.+|.++ .....+.....++ ..|.++++ |.++.++.+|.+
T Consensus 222 ~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~~~~~~~~~~-~~di~t~s--K~~~~G~~iG~~ 281 (434)
T 3l44_A 222 PGFLEKVNELVHEAGALVIYDEVITAF-RFMYGGAQDLLGV-TPDLTALG--KVIGGGLPIGAY 281 (434)
T ss_dssp TTHHHHHHHHHHTTTCEEEEECTTTTT-TSSSSCHHHHHTC-CCSEEEEE--GGGGTTSSCEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEeccccce-eccccHHHHHcCC-CCCeeehh--hhhcCCcCeeeE
Confidence 999999999999999999999875 3222111122244 35766655 888776777764
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.6e-08 Score=112.23 Aligned_cols=163 Identities=12% Similarity=0.012 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcch
Q psy13453 563 LEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNS 642 (764)
Q Consensus 563 lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~ 642 (764)
...++.++++++++ .. ...+||+|||+||..|+.+++... + ++.+|+.....|.
T Consensus 94 ~~~~l~~~la~~~~-~~---------~~v~~~~~Gsea~~~ai~~a~~~~-~---------------~~~vi~~~~~yhg 147 (429)
T 3k28_A 94 IENKLAKLVIERVP-SI---------EIVRMVNSGTEATMSALRLARGYT-G---------------RNKILKFIGCYHG 147 (429)
T ss_dssp HHHHHHHHHHHHST-TC---------SEEEEESSHHHHHHHHHHHHHHHH-T---------------CCEEEEEETCCCC
T ss_pred HHHHHHHHHHHhCC-CC---------CEEEEeCChHHHHHHHHHHHHHhh-C---------------CCEEEEECCCcCC
Confidence 34455667777775 22 257899999999999999987642 1 1224555555564
Q ss_pred hHHHHHHhCCCc-------------------eEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc-
Q psy13453 643 SVEKSAIIGDVP-------------------VRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN- 702 (764)
Q Consensus 643 Sv~kAa~~lGl~-------------------v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp- 702 (764)
+...+....|.. +..+|.+ |+++|++++++.. ..+.+|++.-.++..|.+-+
T Consensus 148 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~---~~~~~vi~ep~~~~~G~~~~~ 219 (429)
T 3k28_A 148 HGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYN-----DLESVKYAFEQFG---DDIACVIVEPVAGNMGVVPPQ 219 (429)
T ss_dssp SCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETT-----CHHHHHHHHHHHG---GGEEEEEECSSBCTTSCBCCC
T ss_pred CcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCC-----CHHHHHHHHHhCC---CCEEEEEEcCCCCCCCcccCC
Confidence 443333323322 2233322 7999999997632 13456666666667888888
Q ss_pred ---HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 703 ---LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 703 ---l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
+++|+++|++||++||+|.+|.++ ...........|+ ..|-++++ |.++..+.+|++
T Consensus 220 ~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~-~~di~t~s--K~~~~G~~iG~~ 279 (429)
T 3k28_A 220 PGFLEGLREVTEQNGALLIFDEVMTGF-RVAYNCGQGYYGV-TPDLTCLG--KVIGGGLPVGAY 279 (429)
T ss_dssp TTHHHHHHHHHHHHTCEEEEECTTTTT-TSSTTHHHHHHTC-CCSEEEEC--GGGGTTSCCEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEecccccc-ccCcchHHHHhCC-CCceehhh--hhhcCCCCeEEE
Confidence 999999999999999999999875 2221111122243 35766654 888766666654
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.2e-08 Score=110.87 Aligned_cols=223 Identities=15% Similarity=0.068 Sum_probs=141.6
Q ss_pred HHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCceecc
Q psy13453 24 SFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKVGG 98 (764)
Q Consensus 24 v~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHVDa 98 (764)
+.+.+...|... +.||+++++.+|+++|+++|++. ++-+++.+.+++++|.+.|++++++ ++|+++|+
T Consensus 109 ~~~~~~~~g~~~---~~v~~~~~~~~d~~~l~~~i~~~----~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~ 181 (393)
T 2huf_A 109 SADMATRYGADV---RVVKSKVGQSLSLDEIRDALLIH----KPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDT 181 (393)
T ss_dssp HHHHHHHTTCEE---EEEECCTTCCCCHHHHHHHHHHH----CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHcCCee---EEEeCCCCCCCCHHHHHHHHhcc----CCcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEc
Confidence 345566678765 99999988999999999999863 1235567788999999999999876 89999999
Q ss_pred ccccc--------cc-eeeeecCCCccc---cc-c-ccccc-------c----CCcc---------c-----C----CCC
Q psy13453 99 VLRRV--------YS-SCLVPRGQKSLR---TT-V-LFHFL-------F----QHWQ---------I-----P----LGR 135 (764)
Q Consensus 99 ~l~~~--------y~-s~ll~rd~~~l~---~~-~-s~~~d-------~----~d~t---------l-----e----~SR 135 (764)
+.... +. .++...-.+.+. .. + ....+ . ..|. . . ++-
T Consensus 182 a~~~~~~~~~~~~~~~d~~~~s~sK~l~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (393)
T 2huf_A 182 VASLGGAPMFMDRWEIDAMYTGSQKVLGAPPGITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTI 261 (393)
T ss_dssp TTTBTTBCCCTTTTTCSEEECCSSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCC
T ss_pred ccccCCCCcchhhcCccEEEECCCcccccCCCeEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCC
Confidence 63110 00 111111111111 00 0 00000 0 0110 0 0 111
Q ss_pred ccc-HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC--ce-eEEEEeeccccccccccccCccCC
Q psy13453 136 RFR-ALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS--MG-LVCFRLKVRFWDKLDNLFGTISFG 211 (764)
Q Consensus 136 r~~-ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~--l~-iV~Fry~P~~~~~~~~~~~~~~~~ 211 (764)
... ...+.++++.+..+|+.++.++..++++++.+.|++. +++++.++. .+ +++|++.. .
T Consensus 262 ~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~---------------~ 325 (393)
T 2huf_A 262 SSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDA-GFELYADPKDRLSTVTTIKVPQ---------------G 325 (393)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCTTEEEEECCT---------------T
T ss_pred CHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-CCeeccCccccCCcEEEEEcCC---------------C
Confidence 111 2234557777766788999999999999999999998 888766542 33 77776521 1
Q ss_pred ccHHHHHHHHHHHhc-CcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy13453 212 DNDLNKAVYDRIIAR-KVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVL 271 (764)
Q Consensus 212 ~d~~n~~L~~~L~~~-G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~ 271 (764)
.+ ..++.++|.++ |..........+..++|+++....+++++++.+++.|+++.+++.
T Consensus 326 ~~--~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~~ 384 (393)
T 2huf_A 326 VD--WLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVFQEAVAAVK 384 (393)
T ss_dssp CC--HHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred CC--HHHHHHHHHHhCCEEEecCcccccCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHcC
Confidence 11 24677788765 864332222123568999887778899999999999999887763
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.8e-08 Score=107.77 Aligned_cols=152 Identities=11% Similarity=-0.023 Sum_probs=110.8
Q ss_pred HHHHHHHHHHcC---CCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 565 VLVMNWLGKALG---LPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 565 ~~v~~~la~llG---~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
.++.+.+++++| .++ ...+||+|+|+++..++.+. . ..|++. -+|
T Consensus 59 ~~lr~~la~~~~~~~~~~---------~~v~~~~G~~~al~~~~~~~-----g-----------------d~Vl~~-p~y 106 (335)
T 1uu1_A 59 EELIEKILSYLDTDFLSK---------NNVSVGNGADEIIYVMMLMF-----D-----------------RSVFFP-PTY 106 (335)
T ss_dssp HHHHHHHHHHHTCSSCCG---------GGEEEESSHHHHHHHHHHHS-----S-----------------EEEECS-SSC
T ss_pred HHHHHHHHHHcCCCCCCH---------HHEEEcCChHHHHHHHHHHh-----C-----------------CcEEEC-CCc
Confidence 345556666666 543 36899999999988777654 1 136677 889
Q ss_pred hhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEec
Q psy13453 642 SSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 721 (764)
Q Consensus 642 ~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDa 721 (764)
.+....+...|.+++.+|.++++.+|+++| + .+-+|+.+..++.+|.+-|.+++.++++.+| ++++|.
T Consensus 107 ~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l-----~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~li~De 174 (335)
T 1uu1_A 107 SCYRIFAKAVGAKFLEVPLTKDLRIPEVNV-----G------EGDVVFIPNPNNPTGHVFEREEIERILKTGA-FVALDE 174 (335)
T ss_dssp HHHHHHHHHHTCEEEECCCCTTSCCCCCCC-----C------TTEEEEEESSCTTTCCCCCHHHHHHHHHTTC-EEEEEC
T ss_pred HHHHHHHHHcCCeEEEeccCCCCCCCHHHc-----C------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-EEEEEC
Confidence 899899999999999999988888998887 1 2446776788999999999999999999989 999999
Q ss_pred cccccccccchhhhhhcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 722 AYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 722 A~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
+|+.+..- .....+. ....+-+..++||+++.| ..+|++
T Consensus 175 ~~~~~~~~--~~~~~~~-~~~~~i~~~s~sK~~g~~G~r~G~~ 214 (335)
T 1uu1_A 175 AYYEFHGE--SYVDFLK-KYENLAVIRTFSKAFSLAAQRVGYV 214 (335)
T ss_dssp TTHHHHCC--CCGGGGG-TCSSEEEEEESTTTTTCGGGCCEEE
T ss_pred cchhhcch--hHHHHhh-hCCCEEEEecchhhcCCcccCeEEE
Confidence 99864311 1111111 112467888999998744 335665
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=5e-08 Score=105.14 Aligned_cols=217 Identities=8% Similarity=-0.015 Sum_probs=138.8
Q ss_pred eeeeHHHHH---hhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----C
Q psy13453 20 LIYESFKAT---HSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----N 91 (764)
Q Consensus 20 ~~YSv~KAa---~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~ 91 (764)
.|.|+.+++ ...|... +.||+++++.+|+++|+++|++. +-+++.+.++.++|.+.|++++.+ +
T Consensus 98 ~~~~~~~~~~~~~~~g~~~---~~v~~~~~~~~d~~~l~~~i~~~-----~~~v~~~~~~nptG~~~~~~~i~~l~~~~~ 169 (384)
T 1eg5_A 98 EHKAVLETMKYLSMKGFKV---KYVPVDSRGVVKLEELEKLVDED-----TFLVSIMAANNEVGTIQPVEDVTRIVKKKN 169 (384)
T ss_dssp SCHHHHHHHHHHHHTTCEE---EECCBCTTSCBCHHHHHHHCCTT-----EEEEEEESBCTTTCBBCCHHHHHHHHHHHC
T ss_pred CchHHHHHHHHHHhcCCEE---EEEccCCCCccCHHHHHHHhCCC-----CeEEEEECCCCCcccccCHHHHHHHHHhcC
Confidence 466666655 6677765 89999989999999999998642 224456789999999999999876 7
Q ss_pred --CCceecccccc--c------c----------------c-eeeeecCCCccccccccccccCCc-----ccCCCC-ccc
Q psy13453 92 --GPLKVGGVLRR--V------Y----------------S-SCLVPRGQKSLRTTVLFHFLFQHW-----QIPLGR-RFR 138 (764)
Q Consensus 92 --~wlHVDa~l~~--~------y----------------~-s~ll~rd~~~l~~~~s~~~d~~d~-----tle~SR-r~~ 138 (764)
+|+++|++... . + + ++++.++.-.+... +..+ ...++- ...
T Consensus 170 ~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~G~G~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 243 (384)
T 1eg5_A 170 KETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGVPIRPL------IHGGGQERGLRSGTQNVPG 243 (384)
T ss_dssp TTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTSCTTCEEEEECTTSCCCCS------BCSSCTTTTTBCSCCCHHH
T ss_pred CceEEEEEhhhhcCCcccCchhcCCCEEEecHHHhcCCCceEEEEEcCCCccccc------cccCcccccccCCCCChHH
Confidence 99999996310 0 0 0 22222221000000 0000 011111 111
Q ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC---CceeEEEEeeccccccccccccCccCCccHH
Q psy13453 139 ALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPP---SMGLVCFRLKVRFWDKLDNLFGTISFGDNDL 215 (764)
Q Consensus 139 ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P---~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~ 215 (764)
...++++++. +.+++.++.++..++++++.+.|++ ++++++.++ ..+.+.|++. +.+
T Consensus 244 ~~a~~~al~~-~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~~~----------------~~~-- 303 (384)
T 1eg5_A 244 IVGAARAMEI-AVEELSEAAKHMEKLRSKLVSGLMN-LGAHIITPLEISLPNTLSVSFP----------------NIR-- 303 (384)
T ss_dssp HHHHHHHHHH-HHHTHHHHHHHHHHHHHHHHHHHHT-TTCEECSCTTSBCTTEEEEECT----------------TCC--
T ss_pred HHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHhCC-CCeEEeCCcccCCCCEEEEEeC----------------CCC--
Confidence 2234555555 3567889999999999999999998 799987764 2356777653 111
Q ss_pred HHHHHHHHHhcCcEEEEecee-------------------CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy13453 216 NKAVYDRIIARKVIYIVKGSF-------------------QDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVL 271 (764)
Q Consensus 216 n~~L~~~L~~~G~~~vs~t~l-------------------~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~ 271 (764)
..++.+.|.+.|..+...... .+..++|+++ .+.+++++++.+++.|+++.+++.
T Consensus 304 ~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~-~~~~~~~~i~~~~~~l~~~~~~~~ 377 (384)
T 1eg5_A 304 GSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISL-CKYNTEEEVDYFLKKIEEILSFLD 377 (384)
T ss_dssp HHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEEC-CTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEEC-CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 246778888888754322111 0146899974 456789999999999999877653
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=98.84 E-value=7.8e-08 Score=105.63 Aligned_cols=218 Identities=8% Similarity=-0.005 Sum_probs=139.5
Q ss_pred eeeeHHHHHhhc---CCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----C
Q psy13453 20 LIYESFKATHSL---SGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----N 91 (764)
Q Consensus 20 ~~YSv~KAa~~L---Gl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~ 91 (764)
.|.|+..++..+ |... +.||+++++.+|+++|+++|+++ +-+++.+.++.++|.+.|++++++ +
T Consensus 122 ~~~~~~~~~~~~~~~g~~~---~~v~~~~~~~~d~~~l~~~i~~~-----~~~v~~~~~~nptG~~~~l~~i~~l~~~~~ 193 (423)
T 3lvm_A 122 EHKAVLDTCRQLEREGFEV---TYLAPQRNGIIDLKELEAAMRDD-----TILVSIMHVNNEIGVVQDIAAIGEMCRARG 193 (423)
T ss_dssp SCHHHHHHHHHHHHTTCEE---EEECCCTTSCCCHHHHHHHCCTT-----EEEEECCSBCTTTCBBCCHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHcCCEE---EEeccCCCCccCHHHHHHhcCCC-----cEEEEEeCCCCCCccccCHHHHHHHHHHcC
Confidence 567888888766 7766 99999999999999999999753 123367778899999999999876 8
Q ss_pred CCceeccccccc--------c-----------------ceeeeecCCCccccccccccccCCc----cc-CCCCccc-HH
Q psy13453 92 GPLKVGGVLRRV--------Y-----------------SSCLVPRGQKSLRTTVLFHFLFQHW----QI-PLGRRFR-AL 140 (764)
Q Consensus 92 ~wlHVDa~l~~~--------y-----------------~s~ll~rd~~~l~~~~s~~~d~~d~----tl-e~SRr~~-AL 140 (764)
+|+++|++.... + .++++.++... .. +. .-...+ .. .++-... ..
T Consensus 194 ~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~g~G~~~~~~~~~-~~-~~--~~~~~~~~~~~~~~~~~~~~~~~ 269 (423)
T 3lvm_A 194 IIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPR-VR-IE--AQMHGGGHERGMRSGTLPVHQIV 269 (423)
T ss_dssp CEEEEECTTTTTTSCCCTTTSCCSEEEEESTTTTSCSSCEEEEECBTTB-CC-CC--CSSCSSCTTTTTCCSCCCHHHHH
T ss_pred CEEEEEhhhhcCCCCcChhhcCCCEEEechHHhcCCCCeEEEEEecccc-CC-CC--ccccCCcccccccCCCCCHHHHH
Confidence 999999963111 0 01222221100 00 00 000000 00 1111111 22
Q ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC---ceeEEEEeeccccccccccccCccCCccHHHH
Q psy13453 141 KLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS---MGLVCFRLKVRFWDKLDNLFGTISFGDNDLNK 217 (764)
Q Consensus 141 klWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~---l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~ 217 (764)
.+.+++..+.. .+.++.++..++++++.+.|++.|+++++.++. .++++|++.. .+ ..
T Consensus 270 a~~~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~--~~ 330 (423)
T 3lvm_A 270 GMGEAYRIAKE-EMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNY----------------VE--GE 330 (423)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTTBCTTEEEEEETT----------------SC--HH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEeCC----------------CC--HH
Confidence 33455554433 388999999999999999999999999987765 4678887621 11 12
Q ss_pred HHHHHHHhcCcEEEEece-----------------eC---CeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHc
Q psy13453 218 AVYDRIIARKVIYIVKGS-----------------FQ---DRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLR 272 (764)
Q Consensus 218 ~L~~~L~~~G~~~vs~t~-----------------l~---g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~ 272 (764)
++.+.|.+ ..+.... +. ...++|+++. ..+++++++.+++.|+++.+++.+
T Consensus 331 ~l~~~l~~---i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~-~~~t~e~i~~~~~~l~~~~~~~~~ 401 (423)
T 3lvm_A 331 SLIMALKD---LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLG-RFTTEEEIDYTIELVRKSIGRLRD 401 (423)
T ss_dssp HHHHHTTT---EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECC-TTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhh---heeccCccccCCCccccHHHHHhCCCccccCceEEEECC-CCCCHHHHHHHHHHHHHHHHHhhc
Confidence 45555544 2222110 00 1468999765 567899999999999999888754
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.84 E-value=6.2e-09 Score=114.25 Aligned_cols=197 Identities=13% Similarity=0.049 Sum_probs=120.6
Q ss_pred HHHHHHHHHhhccc-----CccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHH
Q psy13453 537 SIVGDMLSGAFGLI-----GFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRK 611 (764)
Q Consensus 537 ~~lad~l~~~lN~n-----~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~ 611 (764)
..+.+.+...+.++ ...|.......++.+.+.+|+.+..|++-+ ....+||+|||+++..++.+....
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~-------~~~i~~t~G~t~al~~~~~~l~~~ 121 (417)
T 3g7q_A 49 DYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIE-------PQNIALTNGSQSAFFYLFNLFAGR 121 (417)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCC-------GGGEEEESCHHHHHHHHHHHHSBC
T ss_pred HHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCC-------cccEEEeCCcHHHHHHHHHHHcCC
Confidence 44555555544322 124555556678888899999888776532 246899999999998887765211
Q ss_pred HhhhhccCCCCCccccccCceEEEec-CCcchhHHHHHHhC----C--CceEEEecCC-CCcccHHHHHHHHHHhhhcCC
Q psy13453 612 MINHWQSKNPSLTENDIRNKLVAYTS-DQSNSSVEKSAIIG----D--VPVRQLRSDD-NGVLRGDALLTAVKEDLAKGL 683 (764)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~vi~~S-~~aH~Sv~kAa~~l----G--l~v~~Vp~d~-~g~md~~~Le~~I~~~~~~G~ 683 (764)
. .. ..+..|+++ .-+|.....++... + ..+..++.+. ++.+|+++|+ +.+
T Consensus 122 ---g--d~---------~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~------ 179 (417)
T 3g7q_A 122 ---R--AD---------GSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLH--IGE------ 179 (417)
T ss_dssp ------------------CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGEEEEECCGGGCC--CCT------
T ss_pred ---C--cc---------CCcceEEEeCCCccccchhhccchhhhccccCcccccCCcccccccCHHHhc--ccc------
Confidence 0 00 001145665 55555555444322 2 2344444432 4578999987 322
Q ss_pred CceEEEEeeccCCcccccc---HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCc
Q psy13453 684 IPCCLIATLGTTGTCAFDN---LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDC 760 (764)
Q Consensus 684 ~p~~VvataGTT~~GaiDp---l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~ 760 (764)
.+.+|+.+..++.+|.+-+ +++|+++|++||+++++|.+|+...... .+..........+-+..+++|++.....+
T Consensus 180 ~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~~~G~r~ 258 (417)
T 3g7q_A 180 ETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGI-IFSEARPLWNPNIILCMSLSKLGLPGSRC 258 (417)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCC-BCSCCCCCCCTTEEEEEESGGGTCTTSCC
T ss_pred CceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccc-cccccccCCCCCEEEEEechhccCCCcce
Confidence 2557888888999999977 8999999999999999999998532111 01111111223467788999976555556
Q ss_pred eee
Q psy13453 761 SAM 763 (764)
Q Consensus 761 g~l 763 (764)
|++
T Consensus 259 G~~ 261 (417)
T 3g7q_A 259 GII 261 (417)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=98.83 E-value=5.4e-08 Score=108.78 Aligned_cols=166 Identities=13% Similarity=0.008 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCC
Q psy13453 560 CTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQ 639 (764)
Q Consensus 560 ~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~ 639 (764)
...++.++.+|++++++ .. ...+||+|||+||..|+.+||... + ++-+|+....
T Consensus 95 ~~~~~~~la~~l~~~~~-~~---------~~v~~~~gg~eA~~~al~~ar~~~-~---------------~~~vi~~~~~ 148 (453)
T 2cy8_A 95 SHPLEVRWAERIVAAFP-SI---------RKLRFTGSGTETTLLALRVARAFT-G---------------RRMILRFEGH 148 (453)
T ss_dssp SCHHHHHHHHHHHHHCT-TC---------SEEEEESCHHHHHHHHHHHHHHHH-C---------------CCEEEEECC-
T ss_pred CCHHHHHHHHHHHhhCC-CC---------CEEEEeCCHHHHHHHHHHHHHHhh-C---------------CCEEEEEcCC
Confidence 45788999999999985 22 257899999999999999987532 1 1224444444
Q ss_pred cchhHHHHHH----------hCCC------ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc-
Q psy13453 640 SNSSVEKSAI----------IGDV------PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN- 702 (764)
Q Consensus 640 aH~Sv~kAa~----------~lGl------~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp- 702 (764)
-|....-+.. ..|+ .+..+|. .|+++|+++|++.. ..+.+|+++--.+.+|.+-|
T Consensus 149 yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~---~~~~~vi~ep~~~~tG~~~~~ 220 (453)
T 2cy8_A 149 YHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP-----DDIEGMREVFANHG---SDIAAFIAEPVGSHFGVTPVS 220 (453)
T ss_dssp ---------------------------CGGGEEEECT-----TCHHHHHHHHHHHG---GGEEEEEECSSEHHHHTEECC
T ss_pred cCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-----CCHHHHHHHHHhcC---CCEEEEEECCCCCCCCCcCCC
Confidence 5532221111 1233 2344443 38999999997531 12446665554455898776
Q ss_pred ---HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 703 ---LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 703 ---l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
+++|+++|++||++|++|.+|++. ...+.+.....|+ ..|.++ +.|+++..+..|++
T Consensus 221 ~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~-~~di~s--~sK~l~~G~~~G~v 280 (453)
T 2cy8_A 221 DSFLREGAELARQYGALFILDEVISGF-RVGNHGMQALLDV-QPDLTC--LAKASAGGLPGGIL 280 (453)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECTTTTT-TTCTTHHHHHHTC-CCSEEE--EEGGGGTTSSCEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEecCcccc-ccCchhhhHHhCC-CCcEEE--EChhhhCCcceEEE
Confidence 999999999999999999999965 3222111112233 357654 55999876667765
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.83 E-value=5.1e-08 Score=104.58 Aligned_cols=153 Identities=8% Similarity=-0.071 Sum_probs=112.5
Q ss_pred HHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHH
Q psy13453 566 LVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVE 645 (764)
Q Consensus 566 ~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~ 645 (764)
++.+++++++|.+++ ..+||+|+|+++..++.+.. . ..|+++.-+|.+..
T Consensus 54 ~lr~~la~~~~~~~~---------~i~~t~g~~~al~~~~~~l~-----g----------------d~Vi~~~p~~~~~~ 103 (350)
T 3fkd_A 54 TLRQMLAKRNSVDNN---------AILVTNGPTAAFYQIAQAFR-----G----------------SRSLIAIPSFAEYE 103 (350)
T ss_dssp HHHHHHHHHTTCCGG---------GEEEESHHHHHHHHHHHHTT-----T----------------CEEEEEESCCHHHH
T ss_pred HHHHHHHHHhCcCHH---------HEEEcCCHHHHHHHHHHHHC-----C----------------CEEEEeCCCcHHHH
Confidence 567788888988653 68999999999888776543 1 14678889999999
Q ss_pred HHHHhCCCceEEEec-CCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcC-CEEEEeccc
Q psy13453 646 KSAIIGDVPVRQLRS-DDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYN-IWLHVDAAY 723 (764)
Q Consensus 646 kAa~~lGl~v~~Vp~-d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~g-lwLHVDaA~ 723 (764)
.++...|.+++.+|+ ++.+.+++ + .+-+|+.+..++.+|.+-|+++|.++|+.++ .++++|.||
T Consensus 104 ~~~~~~g~~~~~v~~~~~~~~~~~--------~------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~ 169 (350)
T 3fkd_A 104 DACRMYEHEVCFYPSNEDIGEADF--------S------NMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSY 169 (350)
T ss_dssp HHHHHTTCEEEEEETTSCGGGSCC--------T------TCSEEEEESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTT
T ss_pred HHHHHcCCeEEEEecCCccccCcc--------C------CCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECch
Confidence 999999999999999 76556665 1 2447777889999999999999999998876 799999999
Q ss_pred cccccccchhhhhhcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 724 AGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 724 Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
+.+..-.+.....+.. ...+-+..+++|+++.| ..+|.+
T Consensus 170 ~~~~~~~~~~~~~~~~-~~~~i~~~S~sK~~~~~G~r~G~~ 209 (350)
T 3fkd_A 170 VSFTTEEVIRPADIKG-RKNLVMVYSFSHAYGIPGLRIGYI 209 (350)
T ss_dssp TTSCSSCCCCGGGGTT-CSSEEEEEESHHHHSCGGGCCEEE
T ss_pred hhhccCcchhhHHhhc-CCCEEEEecCchhccCcchheEeE
Confidence 7643221111112211 12346778999998744 556654
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.82 E-value=8.8e-08 Score=107.01 Aligned_cols=178 Identities=12% Similarity=0.022 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCC
Q psy13453 560 CTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQ 639 (764)
Q Consensus 560 ~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~ 639 (764)
......++.+|++++++.+. . .+||+|||+||..|+.+++...... +.. .++-+++....
T Consensus 89 ~~~~~~~la~~l~~~~~~~~---------~-v~~~~ggseA~~~al~~~~~~~~~~-g~~---------~~~~vi~~~~~ 148 (452)
T 3n5m_A 89 SHEPAIKLAEKLNEWLGGEY---------V-IFFSNSGSEANETAFKIARQYYAQK-GEP---------HRYKFMSRYRG 148 (452)
T ss_dssp EEHHHHHHHHHHHHHHTSCE---------E-EEEESSHHHHHHHHHHHHHHHHHTT-TCT---------TCCEEEEETTC
T ss_pred CCHHHHHHHHHHHHhCCCCc---------e-EEEeCchHHHHHHHHHHHHHHHHhc-CCC---------CCCEEEEECCC
Confidence 34566778889999987654 2 7899999999999999998653221 000 11345666667
Q ss_pred cchhHHHHHHhCCC------------ceEEEecCCCC------------cccHHHHHHHHHHhhhcCCCceEEEEeec-c
Q psy13453 640 SNSSVEKSAIIGDV------------PVRQLRSDDNG------------VLRGDALLTAVKEDLAKGLIPCCLIATLG-T 694 (764)
Q Consensus 640 aH~Sv~kAa~~lGl------------~v~~Vp~d~~g------------~md~~~Le~~I~~~~~~G~~p~~VvataG-T 694 (764)
-|-...-+....|. .+..++..... ..++++|+++|++. .+..+.+|++.-. .
T Consensus 149 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~~~vi~ep~~~ 226 (452)
T 3n5m_A 149 YHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWE--LSETIAAFIMEPIIT 226 (452)
T ss_dssp CCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHH--CGGGEEEEEECSSBT
T ss_pred cCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhc--CCCCEEEEEEccccC
Confidence 77555444444332 24555542211 12289999999732 1123445665555 5
Q ss_pred CCcccccc----HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 695 TGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 695 T~~GaiDp----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
+ +|.+-| +++|+++|++||++|++|-+|.++......+.....|+ ..|.++++ |.++.. +..|++
T Consensus 227 n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~-~~di~t~s--K~l~~G~~~ig~~ 296 (452)
T 3n5m_A 227 G-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDV-KPDIITMA--KGITSAYLPLSAT 296 (452)
T ss_dssp T-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTC-CCSEEEEC--GGGGTTSSCCEEE
T ss_pred C-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccchhhhcCC-CCCEEeec--ccccCCCcceEEE
Confidence 7 898776 99999999999999999999887432211111222344 35777765 776644 445543
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=98.82 E-value=3e-08 Score=110.44 Aligned_cols=172 Identities=13% Similarity=-0.001 Sum_probs=114.4
Q ss_pred cccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCce
Q psy13453 553 SWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKL 632 (764)
Q Consensus 553 ~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~ 632 (764)
.|...+...++++.+.+|+. .|++.+ ....+||+|+++++..+ .+. .. ++.
T Consensus 106 ~y~~~~g~~~lr~~ia~~~~--~g~~~~-------~~~i~~t~G~~~al~~~-~~l----~~---------------~gd 156 (449)
T 3qgu_A 106 GYGAEQGQGALREAVASTFY--GHAGRA-------ADEIFISDGSKCDIARI-QMM----FG---------------SKP 156 (449)
T ss_dssp CSTTTTCCHHHHHHHHHHHH--TTTTCC-------GGGEEEESCHHHHHHHH-HHH----HC---------------SSS
T ss_pred CCCCCCCcHHHHHHHHHHHH--cCCCCC-------HHHEEEccCHHHHHHHH-HHH----hC---------------CCC
Confidence 34333456778888888877 555321 24689999999987654 211 11 112
Q ss_pred EEEecCCcchhHHHHHHhCCCc----------eEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc-
Q psy13453 633 VAYTSDQSNSSVEKSAIIGDVP----------VRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD- 701 (764)
Q Consensus 633 vi~~S~~aH~Sv~kAa~~lGl~----------v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD- 701 (764)
.|++.+-+|.+...++...|.. ++.+|.++++.++++ +++. ..+-+|+++..++.+|.+-
T Consensus 157 ~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--------~~~~~v~l~~p~NPtG~~~~ 227 (449)
T 3qgu_A 157 TVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPD-LSKA--------KRTDIIFFCSPNNPTGAAAT 227 (449)
T ss_dssp CEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCC-GGGC--------CCCSEEEEESSCTTTCCCCC
T ss_pred EEEEcCCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCC-hhHc--------CCCCEEEEeCCCCCCCCcCC
Confidence 4778889999999999999988 999999864333322 1110 2244666678889999884
Q ss_pred --cHHHHHHHHHhcCCEEEEeccccccccccchhhh---hhcCCCcccEEEEcCCccCC-CCcCceee
Q psy13453 702 --NLEELGPICQEYNIWLHVDAAYAGSALLLPEYAH---LKRGLEYVDSFDFNTHKWLL-VNFDCSAM 763 (764)
Q Consensus 702 --pl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~---~l~gie~aDSit~d~HK~l~-~P~~~g~l 763 (764)
++++|+++|++||+++++|.+|+++..-- .... .+.+....+-+..+++|+++ ....+|++
T Consensus 228 ~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~ 294 (449)
T 3qgu_A 228 RAQLTELVNFARKNGSILVYDAAYALYISNP-DCPKTIYEIPGADEVAIETCSFSKYAGFTGVRLGWT 294 (449)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECTTGGGCCCT-TSCSSGGGSTTGGGTEEEEEECSGGGTCTTCCCEEE
T ss_pred HHHHHHHHHHHHHCCcEEEEEcchHhhhcCC-CCCCCHhhccCCCCcEEEEecchhhcCCccceeEEE
Confidence 58889999999999999999999854321 1111 11222234678899999997 44556665
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=9e-08 Score=107.00 Aligned_cols=178 Identities=10% Similarity=-0.013 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
.....++.+|++++++... ...+||+|||+||..|+++++...... +.. .++-+|+....-
T Consensus 86 ~~~~~~la~~l~~~~~~~~---------~~v~~~~sGseA~~~al~~~~~~~~~~-G~~---------~~~~vi~~~~~y 146 (448)
T 3dod_A 86 NVPATQLAETLIDISPKKL---------TRVFYSDSGAEAMEIALKMAFQYWKNI-GKP---------EKQKFIAMKNGY 146 (448)
T ss_dssp EHHHHHHHHHHHHHSCTTE---------EEEEEESSHHHHHHHHHHHHHHHHHHT-TCT---------TCCEEEEEC---
T ss_pred CHHHHHHHHHHHHhCCCCC---------CEEEEeCchHHHHHHHHHHHHHHHHhh-CCC---------CCCEEEEECCCC
Confidence 3455677789999986543 257899999999999999998753221 100 012345555555
Q ss_pred chhHHHHHHhCC------------CceEEEecCCCCcc-----------cHHHHHHHHHHhhhcCCCceEEEEeecc-CC
Q psy13453 641 NSSVEKSAIIGD------------VPVRQLRSDDNGVL-----------RGDALLTAVKEDLAKGLIPCCLIATLGT-TG 696 (764)
Q Consensus 641 H~Sv~kAa~~lG------------l~v~~Vp~d~~g~m-----------d~~~Le~~I~~~~~~G~~p~~VvataGT-T~ 696 (764)
|-+..-+....| ..+..+|....++. |+++|+++|++.. ..+.+|++.--. +.
T Consensus 147 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~---~~~a~vi~ep~~~~~ 223 (448)
T 3dod_A 147 HGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHH---EEIAALSIESMVQGA 223 (448)
T ss_dssp --------------------------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHG---GGEEEEEEESSEEST
T ss_pred CCccHHHHHhcCCccccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCC---CCEEEEEEeCcccCC
Confidence 654443333322 13556666554443 5899999997321 124455555444 55
Q ss_pred cccccc----HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCc-Cceee
Q psy13453 697 TCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNF-DCSAM 763 (764)
Q Consensus 697 ~GaiDp----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~-~~g~l 763 (764)
.|.+-+ +++|+++|++||++|++|-+|.+.......+.....|+ ..|.++++ |.++..+ ..|++
T Consensus 224 ~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~-~~di~t~s--K~l~~G~~~ig~v 292 (448)
T 3dod_A 224 SGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENV-QPDLMAAG--KGITGGYLPIAVT 292 (448)
T ss_dssp TTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEEEC--GGGGTTSSCCEEE
T ss_pred CCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccchhhhhhcCC-CCCEEEec--ccccCCcCceEEE
Confidence 676655 99999999999999999999886432211111222344 35777765 9887553 55544
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=3.2e-08 Score=107.61 Aligned_cols=221 Identities=11% Similarity=0.041 Sum_probs=144.5
Q ss_pred HHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCceeccc
Q psy13453 25 FKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKVGGV 99 (764)
Q Consensus 25 ~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHVDa~ 99 (764)
.++++..|... +.||++.++.+|+++|+++|++. ++-+++.+.+++++|.+.|++++.+ ++++++|++
T Consensus 109 ~~~~~~~g~~~---~~v~~~~~~~~d~~~l~~~l~~~----~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea 181 (396)
T 2ch1_A 109 VEMSERYGADV---RTIEGPPDRPFSLETLARAIELH----QPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAV 181 (396)
T ss_dssp HHHHHHTTCEE---EEEECCTTSCCCHHHHHHHHHHH----CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECT
T ss_pred HHHHHHcCCce---EEecCCCCCCCCHHHHHHHHHhC----CCCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEcc
Confidence 46888999876 99999998999999999999863 1235556788899999999999876 889999996
Q ss_pred cccc--------cc------------------eeeeecCCCcccccccc-----ccccCC-------cc-------cCCC
Q psy13453 100 LRRV--------YS------------------SCLVPRGQKSLRTTVLF-----HFLFQH-------WQ-------IPLG 134 (764)
Q Consensus 100 l~~~--------y~------------------s~ll~rd~~~l~~~~s~-----~~d~~d-------~t-------le~S 134 (764)
.... ++ ++++.++ +.+. .+.. .+-+.+ |. ..++
T Consensus 182 ~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (396)
T 2ch1_A 182 ASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISP-KALD-VIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHT 259 (396)
T ss_dssp TTBTTBCCCTTTTTCCEEECCCC-CCCCCSSCEEEEECH-HHHH-HHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCC
T ss_pred ccccCCccchhhcCcCEEEEcCCccccCCCCeEEEEECH-HHHH-hhhhccCcccceEechHHHHHhhhhhcccCCCCCC
Confidence 4200 00 1121111 0000 0000 000000 10 1112
Q ss_pred Ccc-cHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC----ceeEEEEeeccccccccccccCcc
Q psy13453 135 RRF-RALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS----MGLVCFRLKVRFWDKLDNLFGTIS 209 (764)
Q Consensus 135 Rr~-~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~----l~iV~Fry~P~~~~~~~~~~~~~~ 209 (764)
-.. ....+.+++..+..+++.++.++..+.++++.+.|++. +++++.+.. -.+++|++. .
T Consensus 260 ~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-~------------- 324 (396)
T 2ch1_A 260 VASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM-GLDIFVKDPRHRLPTVTGIMIP-K------------- 324 (396)
T ss_dssp CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCBSSCSGGGBCTTEEEEECC-T-------------
T ss_pred CcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCeeccCCccccCCceEEEEcC-C-------------
Confidence 211 22355667777777889999999999999999999988 888765432 136777652 1
Q ss_pred CCccHHHHHHHHHHHhc-CcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHc
Q psy13453 210 FGDNDLNKAVYDRIIAR-KVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLR 272 (764)
Q Consensus 210 ~~~d~~n~~L~~~L~~~-G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~ 272 (764)
+.+ ..++.++|.++ |.............++|++++...+++++++.+++.|+++.+++..
T Consensus 325 -~~~--~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~~ 385 (396)
T 2ch1_A 325 -GVD--WWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATHP 385 (396)
T ss_dssp -TCC--HHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCT
T ss_pred -CCC--HHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHhCc
Confidence 111 24677788765 8754322222234689998877788999999999999999877643
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=5.2e-08 Score=107.89 Aligned_cols=172 Identities=15% Similarity=0.057 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
....++.+.+++++|.+. ...+||+|||+||..++.+++... . ++-+++.+..-|
T Consensus 85 ~~~~~l~~~la~~~~~~~---------~~v~~~~gg~ea~~~a~~~~~~~~--~--------------~~~vi~~~~~yh 139 (433)
T 1zod_A 85 RPVVDLATRLANITPPGL---------DRALLLSTGAESNEAAIRMAKLVT--G--------------KYEIVGFAQSWH 139 (433)
T ss_dssp HHHHHHHHHHHHHSCTTC---------CEEEEESCHHHHHHHHHHHHHHHH--T--------------CCEEEEETTCCC
T ss_pred HHHHHHHHHHHHhCCCCc---------CEEEEeCchHHHHHHHHHHHHHhh--C--------------CCeEEEECCCcC
Confidence 344566677888887644 257899999999999999876421 1 022555666777
Q ss_pred hhHHHHHHhCC-----------CceEEEecCCC------------CcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcc
Q psy13453 642 SSVEKSAIIGD-----------VPVRQLRSDDN------------GVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTC 698 (764)
Q Consensus 642 ~Sv~kAa~~lG-----------l~v~~Vp~d~~------------g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~G 698 (764)
.+..-+....+ ..++.+++... +.+|+++|+++|++. .+..+.+|++.--++.+|
T Consensus 140 g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~~~~~vi~~p~~~~~G 217 (433)
T 1zod_A 140 GMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQ--SSGNLAAFIAEPILSSGG 217 (433)
T ss_dssp CSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHH--CCSCEEEEEECSEETTTT
T ss_pred CCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhc--CCCCeEEEEEccccCCCC
Confidence 66655554321 25666665321 246899999999753 112344555544345578
Q ss_pred cccc----HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 699 AFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 699 aiDp----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
.+-+ +++|+++|++||++|++|.+|++.....+.+.....++ ..|.++++ |.++..+.+|++
T Consensus 218 ~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~-~~di~s~s--K~~~~G~~ig~~ 283 (433)
T 1zod_A 218 IIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGV-TPDILTLS--KTLGAGLPLAAI 283 (433)
T ss_dssp CEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTC-CCSEEEEC--HHHHTTSSCEEE
T ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCC-CCCEEEec--ccccCCCCeeEE
Confidence 7655 99999999999999999999986432211111111233 34666554 988766667765
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=3.1e-08 Score=109.66 Aligned_cols=173 Identities=14% Similarity=0.043 Sum_probs=112.7
Q ss_pred cccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCce
Q psy13453 553 SWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKL 632 (764)
Q Consensus 553 ~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~ 632 (764)
.|.......++++.+.+|+.+-++.++ ...+||+|+++++.. +.. ... ++.
T Consensus 93 ~y~~~~g~~~l~~~ia~~~~~~~~~~~---------~~i~~t~G~~~al~~-l~~----l~~---------------~gd 143 (432)
T 3ei9_A 93 GYGAEQGAKPLRAAIAKTFYGGLGIGD---------DDVFVSDGAKCDISR-LQV----MFG---------------SNV 143 (432)
T ss_dssp CCCCTTCCHHHHHHHHHHHHTTTTCCG---------GGEEEESCHHHHHHH-HHH----HHC---------------TTC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCCc---------ceEEECCChHHHHHH-HHH----HcC---------------CCC
Confidence 344445568899999999886445444 368999999998654 221 111 112
Q ss_pred EEEecCCcchhHHHHHHhCC------------CceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc
Q psy13453 633 VAYTSDQSNSSVEKSAIIGD------------VPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF 700 (764)
Q Consensus 633 vi~~S~~aH~Sv~kAa~~lG------------l~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai 700 (764)
.|++++-+|.++..++...| .+++.+|++.++.++.+ |++ ...+-+|+.+..++.+|.+
T Consensus 144 ~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~--------~~~~~~v~l~~p~NPtG~~ 214 (432)
T 3ei9_A 144 TIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPD-LST--------VGRTDIIFFCSPNNPTGAA 214 (432)
T ss_dssp CEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCC-GGG--------CCCCSEEEEESSCTTTCCC
T ss_pred EEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCC-hhh--------CCCCCEEEEeCCCCCCCCC
Confidence 47788999999999888877 36888998754333222 221 1124466667888999987
Q ss_pred ---ccHHHHHHHHHhcCCEEEEeccccccccccchh-hhhhcCCCcccEEEEcCCccCC-CCcCceee
Q psy13453 701 ---DNLEELGPICQEYNIWLHVDAAYAGSALLLPEY-AHLKRGLEYVDSFDFNTHKWLL-VNFDCSAM 763 (764)
Q Consensus 701 ---Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~-r~~l~gie~aDSit~d~HK~l~-~P~~~g~l 763 (764)
+++++|+++|++||+|+++|.+|+.+..--... -..+.+....+-+..+++|.++ ....+|++
T Consensus 215 ~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G~~ 282 (432)
T 3ei9_A 215 ATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGWT 282 (432)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTTTCCEEE
T ss_pred CCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcccceEEE
Confidence 467788888999999999999999754321100 0111222234677889999987 33445654
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=6.2e-08 Score=107.53 Aligned_cols=165 Identities=18% Similarity=0.037 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
.....++.++++++++ .. ...+||+|||+||..|+.+||... ++ +-+|+....-
T Consensus 95 ~~~~~~l~~~la~~~~-~~---------~~v~~~~sgseA~~~al~~ar~~~-~~---------------~~vi~~~~~y 148 (434)
T 2epj_A 95 GEAEVLLAEKILGYVK-RG---------GMIRFVNSGTEATMTAIRLARGYT-GR---------------DLILKFDGCY 148 (434)
T ss_dssp CHHHHHHHHHHHHHHC-TT---------CEEEEESSHHHHHHHHHHHHHHHH-CC---------------CEEEEEETCC
T ss_pred CHHHHHHHHHHHHhCC-CC---------CEEEEeCCHHHHHHHHHHHHHHhh-CC---------------CeEEEEcCCc
Confidence 3455667778888874 12 247899999999999999987532 11 1244444444
Q ss_pred chhHHHHH-------------HhCCC------ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc
Q psy13453 641 NSSVEKSA-------------IIGDV------PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD 701 (764)
Q Consensus 641 H~Sv~kAa-------------~~lGl------~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD 701 (764)
|....-+. ...|+ .+..+|. .|+++|+++|++.. ..+.+|+++--.+.+|.+-
T Consensus 149 hg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~---~~~~~vi~ep~~~~~G~~~ 220 (434)
T 2epj_A 149 HGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY-----NDVEALERVFAEYG---DRIAGVIVEPVIANAGVIP 220 (434)
T ss_dssp CCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET-----TCHHHHHHHHHHHG---GGEEEEEECSSBCSSSCBC
T ss_pred CCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC-----CCHHHHHHHHHhCC---CCEEEEEEeCCcCCCCccC
Confidence 53222111 01243 3555554 28999999997531 1355666665556689887
Q ss_pred c----HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 702 N----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 702 p----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
| +++|+++|++||++|++|.+|+++ ...+.+.....|+ ..|-+++ +|+++..+..|++
T Consensus 221 ~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~-~~di~s~--sK~l~~G~~~G~v 282 (434)
T 2epj_A 221 PRREFLAALQRLSRESGALLILDEVVTGF-RLGLEGAQGYFNI-EGDIIVL--GKIIGGGFPVGAV 282 (434)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSSTTHHHHHHTC-CCSEEEE--EGGGGTTSSCEEE
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCcchhhHHhCC-CCCeeee--cchhcCCcceeee
Confidence 7 999999999999999999999965 3222122112243 3576654 5998874456654
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.3e-08 Score=109.49 Aligned_cols=125 Identities=13% Similarity=-0.082 Sum_probs=88.1
Q ss_pred EEEecCCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEE-EeeccCCccccccHH---HHHH
Q psy13453 633 VAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLI-ATLGTTGTCAFDNLE---ELGP 708 (764)
Q Consensus 633 vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~Vv-ataGTT~~GaiDpl~---eIa~ 708 (764)
.|++.+-+|.....+++..|.+++.||.+++| +|+++|++++++. .+-+|+ ....++.+|.+-+.+ +|++
T Consensus 133 ~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~~-----~~~~v~~~~~~~NPtG~~~~~~~l~~l~~ 206 (422)
T 3d6k_A 133 KWLCPVPGYDRHFTITEHFGFEMINVPMTDEG-PDMGVVRELVKDP-----QVKGMWTVPVFGNPTGVTFSEQTCRELAE 206 (422)
T ss_dssp EEEEEESCCHHHHHHHHHHTCEEEEEEEETTE-ECHHHHHHHHTST-----TEEEEEECCSSCTTTCCCCCHHHHHHHHH
T ss_pred EEEEeCCccHHHHHHHHHcCCEEEecCCCCCC-CCHHHHHHHHhcC-----CCeEEEEcCCCCCCCCCCCCHHHHHHHHH
Confidence 47778888999999999999999999998776 9999999998541 133544 566788899997766 7888
Q ss_pred HHH-hcCCEEEEeccccc-cccccc----hhhhhh--cCCCcccEEEEcCCccCCCCcCceee
Q psy13453 709 ICQ-EYNIWLHVDAAYAG-SALLLP----EYAHLK--RGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 709 i~~-~~glwLHVDaA~Gg-~~l~~~----~~r~~l--~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
+|+ +||+++++|.+|+. .+.... ...... .+...-+-+..+++|+++.-+.+|.+
T Consensus 207 ~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~GlriG~~ 269 (422)
T 3d6k_A 207 MSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKITHAGSGVSFF 269 (422)
T ss_dssp CCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTTSCTTSSCEEE
T ss_pred HHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhhcCcccceEEE
Confidence 888 99999999999974 221111 111110 11222367788999984432446665
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=4e-08 Score=107.77 Aligned_cols=165 Identities=13% Similarity=-0.034 Sum_probs=105.1
Q ss_pred chHHHHHHHHHHHHHHHcC-CCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEe
Q psy13453 558 PACTELEVLVMNWLGKALG-LPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYT 636 (764)
Q Consensus 558 p~~t~lE~~v~~~la~llG-~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~ 636 (764)
+...++++.+.+++. .| .++ ...++|+|+|+++..++.+ +.. +..|++
T Consensus 75 ~g~~~lr~~la~~l~--~g~~~~---------~~v~~~~G~~~al~~~~~~-----~~~---------------gd~Vl~ 123 (400)
T 3asa_A 75 FGLPALRQKLSEDFY--RGFVDA---------KEIFISDGAKVDLFRLLSF-----FGP---------------NQTVAI 123 (400)
T ss_dssp TCCHHHHHHHHHTTS--TTSSCG---------GGEEEESCHHHHHHHHHHH-----HCS---------------SCEEEE
T ss_pred CCCHHHHHHHHHHHH--cCCCCH---------HHEEEccChHHHHHHHHHH-----cCC---------------CCEEEE
Confidence 344555555555432 46 333 3688999999987653321 111 124677
Q ss_pred cCCcchhHHHHHHhCCCc-eEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc---HHHHHHHHHh
Q psy13453 637 SDQSNSSVEKSAIIGDVP-VRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN---LEELGPICQE 712 (764)
Q Consensus 637 S~~aH~Sv~kAa~~lGl~-v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp---l~eIa~i~~~ 712 (764)
..-+|.+...++...|.. ++.+|.++++.++.+ +++. ..+-+|+.+..++.+|.+-| +++|+++|++
T Consensus 124 ~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-l~~~--------~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~ 194 (400)
T 3asa_A 124 QDPSYPAYLDIARLTGAKEIIALPCLQENAFFPE-FPED--------THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIE 194 (400)
T ss_dssp EESCCHHHHHHHHHTTCSEEEEEECCGGGTTCCC-CCTT--------CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHcCCcceEecccchhcCcccC-hhhc--------cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHH
Confidence 778898998899999998 999998754433321 2210 12446666788899999865 6678899999
Q ss_pred cCCEEEEeccccccccccchhhhhhcCCC---cccEEEEcCCccCCCC-cCceee
Q psy13453 713 YNIWLHVDAAYAGSALLLPEYAHLKRGLE---YVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 713 ~glwLHVDaA~Gg~~l~~~~~r~~l~gie---~aDSit~d~HK~l~~P-~~~g~l 763 (764)
||+++++|.+|+.+..- +.....+..+. ..+-+..+++|+++.| +.+|++
T Consensus 195 ~~~~li~De~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~~ 248 (400)
T 3asa_A 195 HEILILFDAAYSTFISD-PSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWT 248 (400)
T ss_dssp TTCEEEEECTTGGGCCC-TTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEEE
T ss_pred cCCEEEEEchhhhhhcC-CCCCCchhhCCCCCCceEEEecchhhcCCcchheeEE
Confidence 99999999999964321 11111122222 1236688999998743 345654
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=98.78 E-value=5.5e-08 Score=103.97 Aligned_cols=220 Identities=9% Similarity=0.025 Sum_probs=140.2
Q ss_pred HHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCceecc
Q psy13453 24 SFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKVGG 98 (764)
Q Consensus 24 v~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHVDa 98 (764)
+.+++...|+.. +.||+++++.+|+++|+++|+++. ++-+++.+.+++++|.+.|++++++ ++|+++|+
T Consensus 95 ~~~~~~~~g~~~---~~v~~~~~~~~d~~~l~~~l~~~~---~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De 168 (366)
T 1m32_A 95 MVEMAGLMGIAH---HAYDCGEVARPDVQAIDAILNADP---TISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDA 168 (366)
T ss_dssp HHHHHHHHTCCE---EEEECCTTSCCCHHHHHHHHHHCT---TCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHhCCce---EEEeCCCCCCCCHHHHHHHHhcCC---CeEEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEC
Confidence 467888899876 999999989999999999998731 1224457778889999999999876 89999999
Q ss_pred ccccc---c------ceeeeecCCCccccc----cc-cc---cc-c----CCccc------------CCCC--ccc---H
Q psy13453 99 VLRRV---Y------SSCLVPRGQKSLRTT----VL-FH---FL-F----QHWQI------------PLGR--RFR---A 139 (764)
Q Consensus 99 ~l~~~---y------~s~ll~rd~~~l~~~----~s-~~---~d-~----~d~tl------------e~SR--r~~---A 139 (764)
+.... + ..+++..-.+.+..- +- .. .+ + ..+.. .+.| ... .
T Consensus 169 a~~~~~~~~~~~~~~~di~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (366)
T 1m32_A 169 MSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTV 248 (366)
T ss_dssp TTTTTTSCCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHH
T ss_pred CccccCcCccccccCccEEEecCcccccCCCceEEEEECHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHH
Confidence 64210 0 011111111111000 00 00 00 0 00000 0221 112 2
Q ss_pred HHHHHHHHHccHHH-HHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC--Cce-eEEEEeeccccccccccccCccCCccHH
Q psy13453 140 LKLWMTLRSYGLKG-LQAYLRKHISLAKKFADLVEQDDRFELVCPP--SMG-LVCFRLKVRFWDKLDNLFGTISFGDNDL 215 (764)
Q Consensus 140 LklWatL~~lG~eG-y~~~i~~~i~lA~~l~~~I~~~p~~ell~~P--~l~-iV~Fry~P~~~~~~~~~~~~~~~~~d~~ 215 (764)
..+.+++..+...| +.++.++..++++++.+.|++. +++++.++ ..+ ++.|++... . ..+
T Consensus 249 ~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~--~-----------~~~-- 312 (366)
T 1m32_A 249 LAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL-GFNTLLDDELHSPIITAFYSPED--P-----------QYR-- 312 (366)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCCC--T-----------TCC--
T ss_pred HHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC-CCeeccCchhcCceEEEEEcCcc--C-----------CCC--
Confidence 34567777777777 8999999999999999999987 88876652 344 677765310 0 011
Q ss_pred HHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13453 216 NKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 216 n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~ 267 (764)
..++.++|.++|....... ..+..++|+++.. .+++++++.+++.|+++.
T Consensus 313 ~~~~~~~l~~~gi~v~~~~-~~~~~~iRi~~~~-~~~~~~i~~~~~~l~~~~ 362 (366)
T 1m32_A 313 FSEFYRRLKEQGFVIYPGK-VSQSDCFRIGNIG-EVYAADITALLTAIRTAM 362 (366)
T ss_dssp HHHHHHHHHHTTEECEECC-CSSSCEEEEECCS-SCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCEEEECCc-CCCCCEEEEecCC-CCCHHHHHHHHHHHHHHH
Confidence 2468888888886543322 2245689997654 467999999999998764
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=98.77 E-value=2.7e-08 Score=107.44 Aligned_cols=219 Identities=11% Similarity=0.008 Sum_probs=141.7
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecC-CCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-------C
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGL-PDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-------N 91 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpv-d~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-------~ 91 (764)
.|+++.++++..|... +.||+ ++++++|+++|+++|++. ++-+++.+.+++++|.+.|++++++ +
T Consensus 97 ~~~~~~~~~~~~g~~~---~~v~~~~~~~~~d~~~l~~~l~~~----~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~ 169 (385)
T 2bkw_A 97 FSDRFADCLRSYGAQV---DVVRPLKIGESVPLELITEKLSQN----SYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPE 169 (385)
T ss_dssp HHHHHHHHHHHTTCEE---EEECCSSTTSCCCHHHHHHHHHHS----CCSEEEEESEETTTTEECCHHHHHHHHHHHCTT
T ss_pred chHHHHHHHHHcCCce---EEEecCCCCCCCCHHHHHHHHhcC----CCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCC
Confidence 4566668888889866 99999 889999999999999862 2235567789999999999999874 6
Q ss_pred CCceeccccc--------------------cc-c----c-eeeeecCCCcccccccc-----ccc-------c----CCc
Q psy13453 92 GPLKVGGVLR--------------------RV-Y----S-SCLVPRGQKSLRTTVLF-----HFL-------F----QHW 129 (764)
Q Consensus 92 ~wlHVDa~l~--------------------~~-y----~-s~ll~rd~~~l~~~~s~-----~~d-------~----~d~ 129 (764)
+|+|+|++.. ++ + + ++++.+++. +...+.. ... + ..+
T Consensus 170 ~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~G~G~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (385)
T 2bkw_A 170 TFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRF-MDYALNDSKNGHVHGYFSSLRRWTPIMENY 248 (385)
T ss_dssp SEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHH-HHHHTCHHHHCCCSCSTTCHHHHHHHHHHH
T ss_pred CEEEEECccccCCccccccccCceEEEecCccccccCCcceEEEEcHHH-HHHHHhhccCCCCCceeecHHHHhhHHHhh
Confidence 8999999531 11 0 0 223222211 0000000 000 0 000
Q ss_pred cc-----CCCCc-ccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHH-hcCCCeEEeCC-C----CceeEEEEeeccc
Q psy13453 130 QI-----PLGRR-FRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLV-EQDDRFELVCP-P----SMGLVCFRLKVRF 197 (764)
Q Consensus 130 tl-----e~SRr-~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I-~~~p~~ell~~-P----~l~iV~Fry~P~~ 197 (764)
.. .++.. ...+.+.+++..+...|+.++.++..++++++.+.| ++. +++++.+ + ..++++|++.
T Consensus 249 ~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~~~~~~~~~~~~~~~--- 324 (385)
T 2bkw_A 249 EAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL-QLTSVSRYPSNMSAHGLTAVYVA--- 324 (385)
T ss_dssp HTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT-CCEESSCSSSTTBCSSCEEEECS---
T ss_pred hccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc-CceecccCcccccCCceEEEecC---
Confidence 00 01121 122355667777766778899999999999999999 887 8988752 2 3567888652
Q ss_pred cccccccccCccCCccHHHHHHHHHHHhcCcEEEEece-eCCeeEEEEe-cc-CC-CCCHHHHHHHHHHHHHHH
Q psy13453 198 WDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGS-FQDRLFMRFA-IC-SS-QTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 198 ~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~-l~g~~~LRi~-v~-np-~Tt~e~i~~~l~~l~~~~ 267 (764)
+ ..++.++|.+.|..+..... ..+..++|++ +. ++ .+++++++.+++.|+++.
T Consensus 325 -------------~----~~~~~~~l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~ 381 (385)
T 2bkw_A 325 -------------D----PPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLAL 381 (385)
T ss_dssp -------------C----HHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHT
T ss_pred -------------C----HHHHHHHHHHCCeEEeCCCCcccCCCEEEEEccccccccCCHHHHHHHHHHHHHHH
Confidence 1 34678888888864332211 1235789998 43 22 468999999999998764
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=6.7e-08 Score=108.84 Aligned_cols=177 Identities=13% Similarity=0.020 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
....++.++++++++.+.+ ..+||+|||+||..|++++|..+..+ +.. ..+.+|.....-|
T Consensus 118 ~~~~~L~e~la~~~~~~~~---------~v~~~~sGseA~~~Alk~a~~~~~~~-g~~---------g~~~ii~~~~~yh 178 (457)
T 3tfu_A 118 EPAARLAKLLVDITPAGLD---------TVFFSDSGSVSVEVAAKMALQYWRGR-GLP---------GKRRLMTWRGGYH 178 (457)
T ss_dssp HHHHHHHHHHHHHSSTTEE---------EEEEESSHHHHHHHHHHHHHHHHHHT-TCT---------TCCEEEEETTCCC
T ss_pred HHHHHHHHHHHHhCCCCcC---------EEEEeCcHHHHHHHHHHHHHHHHHhc-CCC---------CCceEEEEcCCcC
Confidence 4455677888999875442 57899999999999999998764332 100 0123555566666
Q ss_pred hhHHHHHHhCC-------------CceEEEecC--CCCcccHHHHHHHHHHhhhcCCCceEEEEee-ccCCcccccc---
Q psy13453 642 SSVEKSAIIGD-------------VPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLIATL-GTTGTCAFDN--- 702 (764)
Q Consensus 642 ~Sv~kAa~~lG-------------l~v~~Vp~d--~~g~md~~~Le~~I~~~~~~G~~p~~Vvata-GTT~~GaiDp--- 702 (764)
-+..-+..+.+ ..+..+|.. ..+..|+++|+++|++.. ..+.+|++.- -++.+|.+-+
T Consensus 179 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~---~~~aavi~ep~~~~~~G~~~~~~~ 255 (457)
T 3tfu_A 179 GDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHA---GELAAVVVEPVVQGAGGMRFHDPR 255 (457)
T ss_dssp CSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHG---GGEEEEEECSSEECTTTCEECCTH
T ss_pred CccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCC---CCEEEEEEeCCCcCCCCcccCCHH
Confidence 54443333311 134444443 334479999999998532 1345666655 5667787765
Q ss_pred -HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCc-Cceee
Q psy13453 703 -LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNF-DCSAM 763 (764)
Q Consensus 703 -l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~-~~g~l 763 (764)
+++|+++|++||++|++|.+|.++......+.....|+ ..|-+|++ |.++..+ ..|++
T Consensus 256 ~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~~~~-~pdiit~s--K~l~gG~~~lG~v 315 (457)
T 3tfu_A 256 YLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGV-SPDIMCVG--KALTGGYLSLAAT 315 (457)
T ss_dssp HHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTC-CCSEEEEC--GGGGTTSSCCEEE
T ss_pred HHHHHHHHHHHcCCEEEEEcCccCCccccchhHhHhcCC-CceEEEEC--hhhhCCCcceEEE
Confidence 99999999999999999999987422111111112244 45777664 8776642 45543
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.8e-07 Score=105.00 Aligned_cols=178 Identities=15% Similarity=0.084 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
.....++.+|++++++.+. ...+||+|||+||..|+++++...... +.. .++.+|.....-
T Consensus 93 ~~~~~~la~~l~~~~~~~~---------~~v~~~~ggseA~~~al~~~~~~~~~~-g~~---------~~~~vi~~~~~y 153 (459)
T 4a6r_A 93 HPAVVELSSLLAEVTPAGF---------DRVFYTNSGSESVDTMIRMVRRYWDVQ-GKP---------EKKTLIGRWNGY 153 (459)
T ss_dssp CHHHHHHHHHHHHHSCTTC---------CEEEEESSHHHHHHHHHHHHHHHHHHT-TCT---------TCCEEEEETTCC
T ss_pred CHHHHHHHHHHHHhCCCCC---------CEEEEeCchHHHHHHHHHHHHHHHHhc-CCC---------CCCEEEEECCCc
Confidence 3455677789999987644 257899999999999999998764322 100 123456666677
Q ss_pred chhHHHHHHhCCC------------ceEEEecCC-----CCccc--------HHHHHHHHHHhhhcCCCceEEEEeeccC
Q psy13453 641 NSSVEKSAIIGDV------------PVRQLRSDD-----NGVLR--------GDALLTAVKEDLAKGLIPCCLIATLGTT 695 (764)
Q Consensus 641 H~Sv~kAa~~lGl------------~v~~Vp~d~-----~g~md--------~~~Le~~I~~~~~~G~~p~~VvataGTT 695 (764)
|-...-+....|. .+..++... ++ +| +++|+++|++... ..+.+|++.--..
T Consensus 154 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~~~--~~~~~vi~ep~~~ 230 (459)
T 4a6r_A 154 HGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEIGA--DKVAAFVGEPIQG 230 (459)
T ss_dssp CCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCG--GGEEEEEECSSBT
T ss_pred CCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHcCC--CCEEEEEECCccC
Confidence 7555444444331 455566321 22 55 7889998875211 2345666666666
Q ss_pred Ccccccc----HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 696 GTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 696 ~~GaiDp----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
..|.+-+ +++|+++|++||++|++|-+|.++......+.....|+ ..|.++++ |.++.. +..|++
T Consensus 231 ~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~-~pdi~t~s--K~l~gg~~~lg~v 300 (459)
T 4a6r_A 231 AGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGF-QPDLFTAA--KGLSSGYLPIGAV 300 (459)
T ss_dssp TTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTC-CCSEEEEC--GGGGTTSSCCEEE
T ss_pred CCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCC-CCCeeehh--hhhcCCCCCccce
Confidence 6777776 99999999999999999999887432221111122244 45888776 877644 345543
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.4e-07 Score=103.90 Aligned_cols=178 Identities=12% Similarity=0.031 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
....++.++++++++.+. ...+||+|||+||..|++++|...... +.. .++.+|.....-|
T Consensus 95 ~~~~~la~~l~~~~~~~~---------~~v~~~~gGseA~~~al~~~~~~~~~~-g~~---------~~~~vi~~~~~yh 155 (460)
T 3gju_A 95 EASITLAKMIIDRAPKGM---------SRVYFGLSGSDANETNIKLIWYYNNVL-GRP---------EKKKIISRWRGYH 155 (460)
T ss_dssp HHHHHHHHHHHHHSCTTE---------EEEEEESSHHHHHHHHHHHHHHHHHHT-TCT---------TCCEEEEETTCCC
T ss_pred HHHHHHHHHHHhhCCCCc---------CEEEEeCchHHHHHHHHHHHHHHHHhc-CCC---------CCCEEEEECCCcC
Confidence 455667788888876543 257899999999999999998754322 100 1134566677777
Q ss_pred hhHHHHHHhCCC------------ceEEEecCC-----CCccc--------HHHHHHHHHHhhhcCCCceEEEEeeccCC
Q psy13453 642 SSVEKSAIIGDV------------PVRQLRSDD-----NGVLR--------GDALLTAVKEDLAKGLIPCCLIATLGTTG 696 (764)
Q Consensus 642 ~Sv~kAa~~lGl------------~v~~Vp~d~-----~g~md--------~~~Le~~I~~~~~~G~~p~~VvataGTT~ 696 (764)
-+..-+....|. .+..+|... +..++ +++|+++|++.. ...+.+|++.--++.
T Consensus 156 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~--~~~~aaii~ep~~~~ 233 (460)
T 3gju_A 156 GSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEG--PETIAAFIGEPILGT 233 (460)
T ss_dssp CSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBST
T ss_pred CCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcC--CCCEEEEEECCccCC
Confidence 665555554332 466676432 11233 688999887521 123456666666666
Q ss_pred cccccc----HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 697 TCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 697 ~GaiDp----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
.|.+-+ +++|+++|++||++|++|-+|.++......+.....|+ ..|-++++ |.++.. +..|.+
T Consensus 234 ~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~-~pdi~t~s--K~l~gG~~~lg~v 302 (460)
T 3gju_A 234 GGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGI-KPDLITIA--KGLTSAYAPLSGV 302 (460)
T ss_dssp TTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTC-CCSEEEEC--GGGTTTSSCCEEE
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCC-CCCeeeee--hhhcCCCCCeEEE
Confidence 677655 99999999999999999999987532211111112244 35777765 988764 345543
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=98.70 E-value=3e-07 Score=103.02 Aligned_cols=175 Identities=13% Similarity=0.041 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
.....++.++++++++.+. ....+||+|||+||..|+++||.... ++.+|.....-
T Consensus 103 ~~~~~~la~~l~~~~~~~~--------~~~v~~~~sGseA~~~Alk~a~~~~g----------------~~~ii~~~~~y 158 (451)
T 3oks_A 103 YEGYVAVCEQLNRLTPVRG--------DKRSALFNSGSEAVENAVKIARSHTH----------------KPAVVAFDHAY 158 (451)
T ss_dssp CHHHHHHHHHHHHHSSCCS--------SEEEEEESSHHHHHHHHHHHHHHHHC----------------CCEEEEETTCC
T ss_pred CHHHHHHHHHHHHhCCcCC--------CCEEEEeCcHHHHHHHHHHHHHHhcC----------------CCeEEEEcCCc
Confidence 3455677889999886331 12579999999999999999886421 12355566666
Q ss_pred chhHHHHHHhCC-------------CceEEEecCCCC-------------cccHHHHHHHHHHhhhcCCCceEEEEeecc
Q psy13453 641 NSSVEKSAIIGD-------------VPVRQLRSDDNG-------------VLRGDALLTAVKEDLAKGLIPCCLIATLGT 694 (764)
Q Consensus 641 H~Sv~kAa~~lG-------------l~v~~Vp~d~~g-------------~md~~~Le~~I~~~~~~G~~p~~VvataGT 694 (764)
|-...-+..+.| ..+..+|..... .-+.+.+++.|++... +..+.+|++.--+
T Consensus 159 hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~-~~~~aavi~ep~~ 237 (451)
T 3oks_A 159 HGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIG-ADNLAAVVIEPIQ 237 (451)
T ss_dssp CCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTC-GGGEEEEEECSSB
T ss_pred CCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcC-CCCEEEEEEcCCc
Confidence 755544444422 156777765211 1245556666654321 2235566665555
Q ss_pred CCcccccc----HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 695 TGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 695 T~~GaiDp----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
...|.+-+ +++|+++|++||++|++|-+|.+.......+.....|+ ..|.++++ |.++..+..|++
T Consensus 238 ~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~-~pdi~t~s--K~l~~G~~iG~v 307 (451)
T 3oks_A 238 GEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGI-DPDLIVTA--KGIAGGLPLSAV 307 (451)
T ss_dssp TTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEEEC--GGGGTTSSCEEE
T ss_pred CCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCC-CCCeeeeh--hhhhCCcceEEE
Confidence 55677755 99999999999999999999987432211111122243 45777665 988765556654
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=98.70 E-value=3.1e-07 Score=103.92 Aligned_cols=177 Identities=15% Similarity=0.108 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
.....++.++++++++.+. ...+|++||||||..|++++|...... +.. .++.+|.....-
T Consensus 98 ~~~~~~lae~l~~~~~~~~---------~~v~~~~sGseA~~~aik~a~~~~~~~-g~~---------~~~~ii~~~~~y 158 (472)
T 3hmu_A 98 HVPAIALAQKLAELAPGDL---------NHVFFAGGGSEANDTNIRMVRTYWQNK-GQP---------EKTVIISRKNAY 158 (472)
T ss_dssp CHHHHHHHHHHHHHSCTTE---------EEEEEESSHHHHHHHHHHHHHHHHHHT-TCT---------TCCEEEEETTCC
T ss_pred CHHHHHHHHHHHHhCCCCC---------CEEEEeCCHHHHHHHHHHHHHHHHHhc-CCC---------CCCEEEEEcCcC
Confidence 3455566678888876543 257899999999999999999764322 110 113456666677
Q ss_pred chhHHHHHHhCCC-----------ceEEEecCC-----CCccc--------HHHHHHHHHHhhhcCCCceEEEEeeccCC
Q psy13453 641 NSSVEKSAIIGDV-----------PVRQLRSDD-----NGVLR--------GDALLTAVKEDLAKGLIPCCLIATLGTTG 696 (764)
Q Consensus 641 H~Sv~kAa~~lGl-----------~v~~Vp~d~-----~g~md--------~~~Le~~I~~~~~~G~~p~~VvataGTT~ 696 (764)
|-...-+....|. .+..+|... ++ +| +++|+++|++... ..+.+|++.--...
T Consensus 159 Hg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~~--~~~aavi~epv~~~ 235 (472)
T 3hmu_A 159 HGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLARARELEEAILELGE--NRVAAFIAEPVQGA 235 (472)
T ss_dssp CCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCG--GGEEEEEECSSBST
T ss_pred CCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHhcCC--CCEEEEEEcCccCC
Confidence 7555555444432 456666432 22 44 7889998875311 23556666666666
Q ss_pred cccccc----HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC-cCcee
Q psy13453 697 TCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSA 762 (764)
Q Consensus 697 ~GaiDp----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~ 762 (764)
.|.+-+ +++|+++|++||++|++|-+|.|+......+.....|+ ..|-++++ |.++.. +..|+
T Consensus 236 gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v-~pdi~t~s--K~l~gg~~plG~ 303 (472)
T 3hmu_A 236 GGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGI-RPHIMTIA--KGLSSGYAPIGG 303 (472)
T ss_dssp TTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTC-CCSEEEEC--GGGTTTSSCCEE
T ss_pred CCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCC-CCceeeec--hhhhcCCcceEE
Confidence 788777 99999999999999999999987532221111122344 46888776 987754 24444
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=98.69 E-value=8.9e-08 Score=107.30 Aligned_cols=173 Identities=12% Similarity=0.027 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHcC-CCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 563 LEVLVMNWLGKALG-LPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 563 lE~~v~~~la~llG-~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
...++.+.++++++ .+. ...+||+|||+||..|+.++|.....+....+ .. ...++-+|+....-|
T Consensus 102 ~~~~la~~la~~~~~~~~---------~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~--~~--~~~~~~Vi~~~~~yh 168 (449)
T 2cjg_A 102 AMARFVETFARVLGDPAL---------PHLFFVEGGALAVENALKAAFDWKSRHNQAHG--ID--PALGTQVLHLRGAFH 168 (449)
T ss_dssp HHHHHHHHHHHHHCCTTC---------CEEEEESSHHHHHHHHHHHHHHHHHHHHHHTT--SC--TTCCCEEEEETTCCC
T ss_pred HHHHHHHHHHHhcCCCCC---------CEEEEeCchHHHHHHHHHHHHHHhcccccccc--cc--cCCCCEEEEECCCcC
Confidence 34455566777776 222 35799999999999999988754321000000 00 000123444444556
Q ss_pred hhHHHHHHh--------CCC-----ceEEEecCC--CC--------cccHHHHHHHHHHhhhcCCCceEEEEeeccCCcc
Q psy13453 642 SSVEKSAII--------GDV-----PVRQLRSDD--NG--------VLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTC 698 (764)
Q Consensus 642 ~Sv~kAa~~--------lGl-----~v~~Vp~d~--~g--------~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~G 698 (764)
.+..-+... .+. .+..+|.++ .. ..++++|+++|++. +..+.+|++.--++.+|
T Consensus 169 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~---~~~~~~vi~ep~~~~~G 245 (449)
T 2cjg_A 169 GRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETR---PHDIACFVAEPIQGEGG 245 (449)
T ss_dssp CSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHS---TTTEEEEEECSEETTTT
T ss_pred CcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhc---CCceEEEEEeCcCCCCC
Confidence 433322221 222 567777654 22 36788899998642 12355666665556689
Q ss_pred cccc----HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccC
Q psy13453 699 AFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWL 754 (764)
Q Consensus 699 aiDp----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l 754 (764)
.+-+ +++|+++|++||++|++|.+|.+.......+.....++ ..|.++++ |++
T Consensus 246 ~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~-~~di~t~s--K~l 302 (449)
T 2cjg_A 246 DRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDV-APDIVAFG--KKT 302 (449)
T ss_dssp CEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTC-CCSEEEEC--GGG
T ss_pred CccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCcceeecccCC-CceEEEec--Ccc
Confidence 7666 99999999999999999999997422211111111233 35877765 987
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.7e-07 Score=101.37 Aligned_cols=212 Identities=11% Similarity=0.012 Sum_probs=139.0
Q ss_pred HHHHHhhcCCCCCCeEEecCC--CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhh--------c-CC
Q psy13453 24 SFKATHSLSGTPDQVRLSGLP--DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPV--------S-NG 92 (764)
Q Consensus 24 v~KAa~~LGl~~~~v~~Vpvd--~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia--------~-~~ 92 (764)
+.+.++..|... +.||++ +++.+|+++|+++|++. +-+++.+.+++++|.+-|++++. + ++
T Consensus 118 ~~~~~~~~g~~~---~~v~~~~~~~~~~d~~~l~~~i~~~-----~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~ 189 (390)
T 1elu_A 118 VQAIAARFGITY---RFFPVAATLNQGDAAAVLANHLGPK-----TRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPV 189 (390)
T ss_dssp HHHHHHHHCCEE---EEECCGGGSSSSCHHHHHHTTCCTT-----EEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCC
T ss_pred HHHHHHHhCcEE---EEEcCCCCCCccchHHHHHHhcCCC-----ceEEEEeccccCCceecCHHHHHHHHhhhhhhcCc
Confidence 344577888866 999997 68899999999998642 22446788899999999998865 3 67
Q ss_pred Cceeccccc--------------------cc-----cc-eeeeecCCCccccccccc---------------cccCC--c
Q psy13453 93 PLKVGGVLR--------------------RV-----YS-SCLVPRGQKSLRTTVLFH---------------FLFQH--W 129 (764)
Q Consensus 93 wlHVDa~l~--------------------~~-----y~-s~ll~rd~~~l~~~~s~~---------------~d~~d--~ 129 (764)
++++|++.. ++ ++ ++++.++. .... +... +++.+ .
T Consensus 190 ~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~-~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~ 267 (390)
T 1elu_A 190 RVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGD-CLGE-INPTYVGWRSITYGAKGEPTGWAEGGK 267 (390)
T ss_dssp EEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTT-TGGG-CCCCSCCTTTEEECTTSCEEEECSGGG
T ss_pred EEEEEcccccCCcCCChhhcCCCEEEccccccccCCCceEEEEECHH-hHhh-cCCccccCCcccccccCcccccccchH
Confidence 899997421 11 11 34443321 1110 0000 00000 0
Q ss_pred ccC-CCCc-ccHHHHHHHHHHccHHH-HHHHHHHHHHHHHHHHHHHhcCCCeEEeCC--CCceeEEEEeecccccccccc
Q psy13453 130 QIP-LGRR-FRALKLWMTLRSYGLKG-LQAYLRKHISLAKKFADLVEQDDRFELVCP--PSMGLVCFRLKVRFWDKLDNL 204 (764)
Q Consensus 130 tle-~SRr-~~ALklWatL~~lG~eG-y~~~i~~~i~lA~~l~~~I~~~p~~ell~~--P~l~iV~Fry~P~~~~~~~~~ 204 (764)
.+. ++-. .....+++++..+..+| +.++.++..++++++.+.|++.++++++.+ +..++++|++. +
T Consensus 268 ~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~-~-------- 338 (390)
T 1elu_A 268 RFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVD-S-------- 338 (390)
T ss_dssp GGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEEC-S--------
T ss_pred hhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCccccccEEEEEcC-C--------
Confidence 111 1222 12234567787776667 888999999999999999999999998863 46778888653 1
Q ss_pred ccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 205 FGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 205 ~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
+.+ ..++.++|.+.|..+.... +..++|+++ +..+++++++.+++.|+++
T Consensus 339 ------~~~--~~~~~~~l~~~gi~v~~~~---~~~~iRis~-~~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 339 ------PLG--HRAIVQKLEEQRIYLRTIA---DPDCIRACC-HYITDEEEINHLLARLADF 388 (390)
T ss_dssp ------SSC--HHHHHHHHHHTTEECEEET---TTTEEEEEC-CTTCCHHHHHHHHHHHTTC
T ss_pred ------CCC--HHHHHHHHHHCCEEEEecC---CCCeEEEec-ccCCCHHHHHHHHHHHHhh
Confidence 111 2467888888887544432 446899975 5567899999999988653
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.2e-07 Score=107.19 Aligned_cols=182 Identities=9% Similarity=-0.081 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhh-hcc---CC------CCCcccccc
Q psy13453 560 CTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINH-WQS---KN------PSLTENDIR 629 (764)
Q Consensus 560 ~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~-~~~---~~------~~~~~~~~~ 629 (764)
..++++.+.+.++++++... ...+||+||||||..|+++||.....+ .+. .+ ..-..++-.
T Consensus 108 ~~~l~~~la~~l~~~~~~~~---------~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~ 178 (472)
T 1ohv_A 108 PENFVEKLRESLLSVAPKGM---------SQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCP 178 (472)
T ss_dssp BTTHHHHHHHTGGGGCCTTC---------CEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSC
T ss_pred HHHHHHHHHHHHHHhCCCCc---------CEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCC
Confidence 34677777777777664322 257899999999999999998653210 000 00 000000000
Q ss_pred CceEEEecCCcchhHHHHHHhCCCc-----------eEEEecCC-CC-------------cccHHHHHHHHHHhhhcCCC
Q psy13453 630 NKLVAYTSDQSNSSVEKSAIIGDVP-----------VRQLRSDD-NG-------------VLRGDALLTAVKEDLAKGLI 684 (764)
Q Consensus 630 ~~~vi~~S~~aH~Sv~kAa~~lGl~-----------v~~Vp~d~-~g-------------~md~~~Le~~I~~~~~~G~~ 684 (764)
++-+|.....-|-+..-+..+.|.. +..++... .+ ..|+++|+++|++....+..
T Consensus 179 r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~ 258 (472)
T 1ohv_A 179 DYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKT 258 (472)
T ss_dssp CCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCC
Confidence 1345666667787666665554421 12233211 11 34789999999764322223
Q ss_pred ceEEEEeeccCCcccccc----HHHHHHHHHhcCCEEEEeccccccccccch-hhhhhcCCC-cccEEEEcCCcc
Q psy13453 685 PCCLIATLGTTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPE-YAHLKRGLE-YVDSFDFNTHKW 753 (764)
Q Consensus 685 p~~VvataGTT~~GaiDp----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~-~r~~l~gie-~aDSit~d~HK~ 753 (764)
+.+|++..-.+++|.+-| +++|+++|++||++||+|.+|.|+-. ... +.....|+. ..|.++++ |+
T Consensus 259 ~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~-~g~~~~~~~~gv~~~~Di~t~s--K~ 330 (472)
T 1ohv_A 259 VAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGS-TGKFWAHEHWGLDDPADVMTFS--KK 330 (472)
T ss_dssp EEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTT-TSSSSGGGGGCCSSCCSEEEEC--GG
T ss_pred EEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCC-CCCchhccccCCCCCCCEEEEc--cc
Confidence 557777666677898877 99999999999999999999986221 111 111112442 36888776 98
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=9.6e-08 Score=102.72 Aligned_cols=221 Identities=11% Similarity=0.032 Sum_probs=139.2
Q ss_pred eeeeHHHHHhhcCCCCCCeEEec--CCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CC
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSG--LPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NG 92 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vp--vd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~ 92 (764)
.|+|...+++..|+.. +.|| +++++.+|+++|+++|++.....++-+++.+.+++++|.+.|++++.+ ++
T Consensus 102 ~~~~~~~~~~~~g~~~---~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~ 178 (371)
T 2e7j_A 102 CHYSSYVAAERAGLNI---ALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDV 178 (371)
T ss_dssp CCHHHHHHHHHTTCEE---EEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTC
T ss_pred cchHHHHHHHHcCCeE---EEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccCCHHHHHHHHHHcCC
Confidence 5789999999999876 9999 888899999999999986533223334468889999999999999876 88
Q ss_pred Cceeccccc--------------------cc-----c-ceeeeecCCCccccccccccc-c-CCccc-CCCCccc-HHHH
Q psy13453 93 PLKVGGVLR--------------------RV-----Y-SSCLVPRGQKSLRTTVLFHFL-F-QHWQI-PLGRRFR-ALKL 142 (764)
Q Consensus 93 wlHVDa~l~--------------------~~-----y-~s~ll~rd~~~l~~~~s~~~d-~-~d~tl-e~SRr~~-ALkl 142 (764)
|+++|++.. ++ . +++++.+++ .....+..... + .++.. .++-... ...+
T Consensus 179 ~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 257 (371)
T 2e7j_A 179 PLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEE-WAEIVLRRSEKYKNKEVELLGCTARGATIITL 257 (371)
T ss_dssp CEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTT-TTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHH
T ss_pred eEEEECccccCCCCCChhhcCCCEEEecCCcCCCCCCCcEEEEEech-hhhhhccccccCcccccccccCCcCHHHHHHH
Confidence 999999531 11 1 134444432 11110000000 0 00000 1222222 2234
Q ss_pred HHHHHHccHHHHHHHHHHH--HHHHHHHHHHHhcCCCeEEeCCC--CceeEEEEeeccccccccccccCccCCccHHHHH
Q psy13453 143 WMTLRSYGLKGLQAYLRKH--ISLAKKFADLVEQDDRFELVCPP--SMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKA 218 (764)
Q Consensus 143 WatL~~lG~eGy~~~i~~~--i~lA~~l~~~I~~~p~~ell~~P--~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~ 218 (764)
.++++.+.. ++.++. .++++++.+.|++. +++++.++ ..++++|++. -..+
T Consensus 258 ~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~--------------------~~~~ 312 (371)
T 2e7j_A 258 MASFPHVRE----RIKRWDEEVEKARRFAAEMEKL-GIKQLGDNPHNHDLMFFHAE--------------------VLYE 312 (371)
T ss_dssp HHHHHHHHH----HGGGHHHHHHHHHHHHHHHHHT-TCEEESSSSCCSSEEEEECH--------------------HHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHc-CcEEecCCCccCceEEEECC--------------------CHHH
Confidence 455555433 566667 78999999999988 99988754 4667777642 0134
Q ss_pred HHHHHHhcCcEEEE-ecee--CC--eeEEE-EeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 219 VYDRIIARKVIYIV-KGSF--QD--RLFMR-FAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 219 L~~~L~~~G~~~vs-~t~l--~g--~~~LR-i~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
+.++|.+.|..... .... ++ ..++| +++....+++++++.+++.|+++.++
T Consensus 313 ~~~~l~~~gi~~~~~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~~ 369 (371)
T 2e7j_A 313 ISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEK 369 (371)
T ss_dssp HHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCEEEEeccccccccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHHh
Confidence 55566655653211 0001 02 46799 87765547899999999999887654
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=98.65 E-value=1.4e-07 Score=100.47 Aligned_cols=220 Identities=11% Similarity=-0.019 Sum_probs=138.2
Q ss_pred eeeeHH--HHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-------
Q psy13453 20 LIYESF--KATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS------- 90 (764)
Q Consensus 20 ~~YSv~--KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~------- 90 (764)
.|+|.. +.+...|... +.||+++++.+|+++|++ + ++-+++.+.+++++|.+.|++++++
T Consensus 84 ~~~~~~~~~~~~~~g~~~---~~v~~~~~~~~d~~~l~~---~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~ 152 (352)
T 1iug_A 84 GKFSERFYEIALEAGLVV---ERLDYPYGDTPRPEDVAK---E-----GYAGLLLVHSETSTGALADLPALARAFKEKNP 152 (352)
T ss_dssp SHHHHHHHHHHHHTTCEE---EEEECCTTCCCCTTTSCC---S-----SCSEEEEESEETTTTEECCHHHHHHHHHHHCT
T ss_pred CchhHHHHHHHHHcCCce---EEEeCCCCCCCCHHHHhc---c-----CCcEEEEEEecCCcceecCHHHHHHHHHhhCC
Confidence 366643 5556678765 999999889999999887 1 2235567889999999999999874
Q ss_pred CCCceeccccccc--------cc-eeeeecCCCccccc----c-ccccc---c----------C-------CcccCCCCc
Q psy13453 91 NGPLKVGGVLRRV--------YS-SCLVPRGQKSLRTT----V-LFHFL---F----------Q-------HWQIPLGRR 136 (764)
Q Consensus 91 ~~wlHVDa~l~~~--------y~-s~ll~rd~~~l~~~----~-s~~~d---~----------~-------d~tle~SRr 136 (764)
++|+++|++.... +. .++...-.+.+... + ....+ . . .....++-.
T Consensus 153 ~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (352)
T 1iug_A 153 EGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPA 232 (352)
T ss_dssp TCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCC
T ss_pred CCEEEEECCccccCcceeccccCeeEEEecCcccccCCCceeEEEECHHHHHHhhCCCceeeHHHHHhhcccCCCCCCCC
Confidence 6899999863200 00 01111111111100 0 00000 0 0 000111111
Q ss_pred cc-HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC-CceeEEEEeeccccccccccccCccCCccH
Q psy13453 137 FR-ALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPP-SMGLVCFRLKVRFWDKLDNLFGTISFGDND 214 (764)
Q Consensus 137 ~~-ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P-~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~ 214 (764)
.. ...+.+++..+... +.++.++..++++++.+.|++. +++++.++ ..++++|++.. +.+
T Consensus 233 ~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~---------------~~~- 294 (352)
T 1iug_A 233 INLVLAVAAVLEEVLPR-LEEHLALKAWQNALLYGVGEEG-GLRPVPKRFSPAVAAFYLPE---------------GVP- 294 (352)
T ss_dssp HHHHHHHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHT-TCEESCSSBCTTCEEEECCT---------------TCC-
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHC-CCcccccccCCeEEEEEcCC---------------CCC-
Confidence 11 22445666665555 8899999999999999999998 89987654 45678887531 111
Q ss_pred HHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 215 LNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 215 ~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
..++.++|.++|........-.+..++|+++.. .+++++++.+++.|+++.+++
T Consensus 295 -~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~-~~~~~~i~~~~~~l~~~~~~~ 348 (352)
T 1iug_A 295 -YARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMG-AYDRYEALGVAGMFREVLEEI 348 (352)
T ss_dssp -HHHHHHHHHTTTEECEECCGGGTTTEEEECCCS-SCCHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHCCEEEEeCCCccCCCEEEEEccc-cCCHHHHHHHHHHHHHHHHHh
Confidence 246888888888755443322235689997655 567999999999999987765
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=98.62 E-value=7.6e-07 Score=99.88 Aligned_cols=176 Identities=15% Similarity=0.045 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
.....++.++++++++.+.. ...+||+||||||..|+++||... . ++.+|.....-
T Consensus 106 ~~~~~~la~~l~~~~~~~~~--------~~v~~~~sGseA~~~alk~a~~~~-g---------------~~~ii~~~~~y 161 (453)
T 4ffc_A 106 YEQYVQVAELLNALTPGDHD--------KRTALFNSGAEAVENAIKVARLAT-G---------------RPAVVAFDNAY 161 (453)
T ss_dssp CHHHHHHHHHHHHHSSCSSC--------EEEEEESSHHHHHHHHHHHHHHHH-C---------------CCEEEEETTCC
T ss_pred CHHHHHHHHHHHHhCCCCCC--------cEEEEeCcHHHHHHHHHHHHHHhc-C---------------CCEEEEEcCcc
Confidence 45556778899999874321 257999999999999999988642 1 12356666777
Q ss_pred chhHHHHHHhCCC-------------ceEEEecCC----CCccc-HHHHHHHHHHhhh--cCCCceEEEEeeccCCcccc
Q psy13453 641 NSSVEKSAIIGDV-------------PVRQLRSDD----NGVLR-GDALLTAVKEDLA--KGLIPCCLIATLGTTGTCAF 700 (764)
Q Consensus 641 H~Sv~kAa~~lGl-------------~v~~Vp~d~----~g~md-~~~Le~~I~~~~~--~G~~p~~VvataGTT~~Gai 700 (764)
|-...-+..+.|. .+..+|... ...++ .+.++..++...+ ....+.+|+..--+...|.+
T Consensus 162 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~ 241 (453)
T 4ffc_A 162 HGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFI 241 (453)
T ss_dssp CCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSB
T ss_pred CCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcc
Confidence 7555555444321 467777641 11122 2333322221111 11234455555555555666
Q ss_pred cc----HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 701 DN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 701 Dp----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
-+ +++|+++|++||++|++|-+|.++......+.....|+ ..|-++++ |.++..+..|.+
T Consensus 242 ~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~-~pdi~t~s--K~~~~G~~~G~~ 305 (453)
T 4ffc_A 242 VPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGI-VPDIVTMA--KGIAGGMPLSAV 305 (453)
T ss_dssp CCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTC-CCSEEEEC--GGGGTTSSCEEE
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCC-CcchHhhh--hhhcCCcCeEEE
Confidence 55 99999999999999999999987432211111112233 35777765 887664555554
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=8.1e-07 Score=96.55 Aligned_cols=218 Identities=11% Similarity=0.013 Sum_probs=139.1
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCC-CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCC
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPD-SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGP 93 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~-~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~w 93 (764)
.|.++..++..+|... +.||+++ ++.+|+++|+++|++. +-+|. ++.++|.+.|++++++ +++
T Consensus 87 ~~~~~~~~~~~~g~~~---~~v~~~~~~~~~d~~~l~~~i~~~------~~~v~--~~n~tG~~~~l~~i~~la~~~~~~ 155 (388)
T 1b9h_A 87 TFISSSQAAQRLGAVT---VPVDVDAATYNLDPEAVAAAVTPR------TKVIM--PVHMAGLMADMDALAKISADTGVP 155 (388)
T ss_dssp SCTHHHHHHHHTTCEE---EEECBCTTTCCBCHHHHHHHCCTT------EEEEC--CBCGGGCCCCHHHHHHHHHHHTCC
T ss_pred ccHHHHHHHHHcCCEE---EEEecCCCcCCCCHHHHHHhcCcC------ceEEE--EeCCccCcCCHHHHHHHHHHcCCE
Confidence 5888999999999876 9999986 5899999999999642 23332 7888999999999886 899
Q ss_pred ceecccccc--cc--------------------------ceeeeecCCCc--cccccccccccC---------CcccCCC
Q psy13453 94 LKVGGVLRR--VY--------------------------SSCLVPRGQKS--LRTTVLFHFLFQ---------HWQIPLG 134 (764)
Q Consensus 94 lHVDa~l~~--~y--------------------------~s~ll~rd~~~--l~~~~s~~~d~~---------d~tle~S 134 (764)
+|+|++... .+ +++++.++... +... .....++ ......+
T Consensus 156 li~D~a~~~g~~~~~~~~~~~~~i~~~S~s~~K~l~g~~~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~ 234 (388)
T 1b9h_A 156 LLQDAAHAHGARWQGKRVGELDSIATFSFQNGKLMTAGEGGAVVFPDGETEKYETA-FLRHSCGRPRDDRRYFHKIAGSN 234 (388)
T ss_dssp BCEECTTCTTCEETTEEGGGSSSCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHH-HHHTBTTCCTTCSSCCCCSCCCB
T ss_pred EEEecchhcCCccCCeecccccceEEEEccCCCcccCCCeEEEEECCHHHHHHHHH-HHHHhCCCCccCccceeeccccc
Confidence 999995321 01 12333222211 1100 0000000 0011112
Q ss_pred CcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCC-----CC-ceeEEEEeeccccccccccccCc
Q psy13453 135 RRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCP-----PS-MGLVCFRLKVRFWDKLDNLFGTI 208 (764)
Q Consensus 135 Rr~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~-----P~-l~iV~Fry~P~~~~~~~~~~~~~ 208 (764)
-+...+..|+.+.. .+.+.+.+++..++++++.+.|++.|++++..+ +. .+++.|++..
T Consensus 235 ~~~~~~~~a~~~~~--~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 299 (388)
T 1b9h_A 235 MRLNEFSASVLRAQ--LARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPG------------- 299 (388)
T ss_dssp CBCBHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTT-------------
T ss_pred CCcCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCC-------------
Confidence 23455555654433 455777888888999999999999999998763 22 4577776531
Q ss_pred cCCccHH-HHHHHHHHHhcCcEEEEec-eeC-C---------------------------eeEEEEeccCCCC-CHHHHH
Q psy13453 209 SFGDNDL-NKAVYDRIIARKVIYIVKG-SFQ-D---------------------------RLFMRFAICSSQT-EESDVQ 257 (764)
Q Consensus 209 ~~~~d~~-n~~L~~~L~~~G~~~vs~t-~l~-g---------------------------~~~LRi~v~np~T-t~e~i~ 257 (764)
.+.. ..++.++|.++|....... ..+ . ...||+. +++.+ ++++++
T Consensus 300 ---~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~-~~~~~~t~edi~ 375 (388)
T 1b9h_A 300 ---LTEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLH-HRVLLAGEPELH 375 (388)
T ss_dssp ---CCHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEE-GGGGGSCHHHHH
T ss_pred ---cCcccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEec-CCCCCCCHHHHH
Confidence 1111 2578888888897553321 110 0 1368985 45555 999999
Q ss_pred HHHHHHHHHHH
Q psy13453 258 LGWNEIRTATE 268 (764)
Q Consensus 258 ~~l~~l~~~~~ 268 (764)
.+++.|+++.+
T Consensus 376 ~~~~~l~~~~~ 386 (388)
T 1b9h_A 376 ATAEIIADAVA 386 (388)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988764
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=98.61 E-value=9.6e-07 Score=99.92 Aligned_cols=178 Identities=11% Similarity=-0.024 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
.....++.+|++++++.+. ...+||+|||+||..|++++|.....+ +.. .++.+|.....-
T Consensus 96 ~~~~~~la~~l~~~~~~~~---------~~v~~~~sGseA~~~Aik~a~~~~~~~-g~~---------~~~~vi~~~~~y 156 (476)
T 3i5t_A 96 TSPAARLAEKIATLTPGDL---------NRIFFTTGGSTAVDSALRFSEFYNNVL-GRP---------QKKRIIVRYDGY 156 (476)
T ss_dssp CHHHHHHHHHHHTTSSTTC---------CEEEEESSHHHHHHHHHHHHHHHHHHT-TCT---------TCCEEEEETTCC
T ss_pred CHHHHHHHHHHHhcCCCCc---------CEEEEeCchHHHHHHHHHHHHHHHHhc-CCC---------CCCEEEEEcCCc
Confidence 4566677889999886543 257899999999999999999865332 110 123466667777
Q ss_pred chhHHHHHHhCCC------------ceEEEecCCC--C-ccc--------HHHHHHHHHHhhhcCCCceEEEEeeccCCc
Q psy13453 641 NSSVEKSAIIGDV------------PVRQLRSDDN--G-VLR--------GDALLTAVKEDLAKGLIPCCLIATLGTTGT 697 (764)
Q Consensus 641 H~Sv~kAa~~lGl------------~v~~Vp~d~~--g-~md--------~~~Le~~I~~~~~~G~~p~~VvataGTT~~ 697 (764)
|-+..-+....|. .+..++.... + ..| +++|+++|++.. ...+.+|++.--....
T Consensus 157 Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~--~~~~aavi~ep~~~~~ 234 (476)
T 3i5t_A 157 HGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLG--PDTIAAFLAEPILASG 234 (476)
T ss_dssp CCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBTTT
T ss_pred CcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcC--CCCEEEEEECCccCCC
Confidence 7666555554432 2445553221 1 122 789999887531 1234566666666667
Q ss_pred ccccc----HHHHHHHHHhcCCEEEEeccccccccccchhhhh-hcCCCcccEEEEcCCccCCCC-cCcee
Q psy13453 698 CAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHL-KRGLEYVDSFDFNTHKWLLVN-FDCSA 762 (764)
Q Consensus 698 GaiDp----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~-l~gie~aDSit~d~HK~l~~P-~~~g~ 762 (764)
|.+-+ |++|+++|++||++|++|-+|.++......+... ..|+ ..|-++++ |.++.. +..|+
T Consensus 235 G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v-~pdi~t~s--K~l~~G~~plg~ 302 (476)
T 3i5t_A 235 GVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGV-VPDIITFA--KGVTSGYVPLGG 302 (476)
T ss_dssp TSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCC-CCSEEEEC--GGGGTTSSCCEE
T ss_pred CcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCceeeecccCC-Ccchhhhh--hhhcCCCcCeEE
Confidence 76555 9999999999999999999998743222111122 2344 46888776 887754 34444
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.8e-07 Score=102.23 Aligned_cols=218 Identities=7% Similarity=-0.030 Sum_probs=134.2
Q ss_pred eeeeHHHHHhh----cCCCCCCeEEecCC-CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc----
Q psy13453 20 LIYESFKATHS----LSGTPDQVRLSGLP-DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS---- 90 (764)
Q Consensus 20 ~~YSv~KAa~~----LGl~~~~v~~Vpvd-~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~---- 90 (764)
.|.|+..+... .|... +.||++ +++.+|+++|+++|+++ +-+++.+.+++++|.+.|++++++
T Consensus 122 ~~~~~~~~~~~~~~~~g~~v---~~v~~~~~~~~~d~~~l~~~l~~~-----~~~v~~~~~~nptG~~~~l~~i~~l~~~ 193 (406)
T 3cai_A 122 DDEANIAPWLRAAHRYGAKV---KWAEVDIETGELPTWQWESLISKS-----TRLVAVNSASGTLGGVTDLRAMTKLVHD 193 (406)
T ss_dssp SCGGGTHHHHHHHHHHBCEE---EEECCCTTTCCCCGGGHHHHCCTT-----EEEEEEESBCTTTCBBCCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCeE---EEEecCcccCCcCHHHHHHHhCCC-----ceEEEEeCCcCCccccCCHHHHHHHHHH
Confidence 34455444444 68765 999998 78999999999999642 224467889999999999999876
Q ss_pred -CCCceecccccc--------------------c----cce-eeeecCCCcccccccc-ccccCC---ccc-CCCCcccH
Q psy13453 91 -NGPLKVGGVLRR--------------------V----YSS-CLVPRGQKSLRTTVLF-HFLFQH---WQI-PLGRRFRA 139 (764)
Q Consensus 91 -~~wlHVDa~l~~--------------------~----y~s-~ll~rd~~~l~~~~s~-~~d~~d---~tl-e~SRr~~A 139 (764)
++++++|++... + .++ +++.++ +... .+.. ...++. ..+ .++....+
T Consensus 194 ~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~~g~~~G~~~~~~~-~~~~-~l~~~~~~~~~~~~~~~~~~t~~~~~ 271 (406)
T 3cai_A 194 VGALVVVDHSAAAPYRLLDIRETDADVVTVNAHAWGGPPIGAMVFRDP-SVMN-SFGSVSTNPYATGPARLEIGVHQFGL 271 (406)
T ss_dssp TTCEEEEECTTTTTTCCCCHHHHCCSEEEEEGGGGTSCSCEEEEESCH-HHHH-TSCCCCSCTTCCGGGGGCCSCCCHHH
T ss_pred cCCEEEEEcccccCCCCCCchhcCCCEEEeehhhhcCCCcCeEEEEeh-HHHh-hcCCcccCCCCCccccccCCCccHHH
Confidence 899999995321 0 012 333221 1000 0000 000000 001 12221111
Q ss_pred H-HHHHHHHHc---cH-----------HHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC--CceeEEEEeecccccccc
Q psy13453 140 L-KLWMTLRSY---GL-----------KGLQAYLRKHISLAKKFADLVEQDDRFELVCPP--SMGLVCFRLKVRFWDKLD 202 (764)
Q Consensus 140 L-klWatL~~l---G~-----------eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P--~l~iV~Fry~P~~~~~~~ 202 (764)
+ .+-+++..+ |. +++.++.++..++++++.+.|++.++++++.++ ..++++|++..
T Consensus 272 ~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~------- 344 (406)
T 3cai_A 272 LAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLIGRPEAQIPVVSFAVHK------- 344 (406)
T ss_dssp HHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECCCCSSBCSEEEEEETT-------
T ss_pred HHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCccccCCEEEEEECC-------
Confidence 1 223334332 31 157888899999999999999999999987653 36678887531
Q ss_pred ccccCccCCccHHHHHHHHHHHhcCcEEEEec--------ee-CCeeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 203 NLFGTISFGDNDLNKAVYDRIIARKVIYIVKG--------SF-QDRLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 203 ~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t--------~l-~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
.+ ..++.++|.+.|....... .+ .+..++|+++. ..+++++++.+++.|+++
T Consensus 345 ---------~~--~~~~~~~L~~~gi~v~~g~~~~~~~~~g~~~~~~~iRis~~-~~~t~e~i~~~~~~l~~~ 405 (406)
T 3cai_A 345 ---------VP--ADRVVQRLADNGILAIANTGSRVLDVLGVNDVGGAVTVGLA-HYSTMAEVDQLVRALASL 405 (406)
T ss_dssp ---------BC--HHHHHHHHHHTTEECEECCSCHHHHHHTTTTTTCCEEEECC-TTCCHHHHHHHHHHHHTC
T ss_pred ---------cC--HHHHHHHHHHCCcEEecCChHHHHHHcCCCCCCCeEEEEee-cCCCHHHHHHHHHHHHHh
Confidence 11 2467788888887554332 11 12468999764 556899999999988753
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=98.58 E-value=8.8e-08 Score=104.25 Aligned_cols=225 Identities=8% Similarity=-0.066 Sum_probs=117.4
Q ss_pred eeeeHHHHHhhc---CCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----C
Q psy13453 20 LIYESFKATHSL---SGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----N 91 (764)
Q Consensus 20 ~~YSv~KAa~~L---Gl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~ 91 (764)
.|.|+..++..+ |... +.||+++++.+|+++|+++|+++ +-+++.+.++.++|.+.|++++.+ +
T Consensus 118 ~~~~~~~~~~~~~~~g~~~---~~v~~~~~~~~d~~~l~~~i~~~-----~~~v~~~~~~nptG~~~~l~~i~~la~~~~ 189 (400)
T 3vax_A 118 EHKAVLEPLEHLAGRGFEV---DFLTPGPSGRISVEGVMERLRPD-----TLLVSLMHVNNETGVIQPVAELAQQLRATP 189 (400)
T ss_dssp SCHHHHHHHHHHHTTTCEE---EEECCCTTCCCCHHHHHTTCCTT-----EEEEECCSBCTTTCBBCCHHHHHHHHTTSS
T ss_pred ccHhHHHHHHHHHhcCCeE---EEEccCCCCCcCHHHHHHhcCCC-----ceEEEEECCCCCceeeCcHHHHHHHHHhcC
Confidence 366777766665 6655 99999999999999999998753 224467788999999999999876 8
Q ss_pred CCceeccccccc--------------------c----ceeee-ecCCCccccccccccccCCcccC-C--CCcccHHHHH
Q psy13453 92 GPLKVGGVLRRV--------------------Y----SSCLV-PRGQKSLRTTVLFHFLFQHWQIP-L--GRRFRALKLW 143 (764)
Q Consensus 92 ~wlHVDa~l~~~--------------------y----~s~ll-~rd~~~l~~~~s~~~d~~d~tle-~--SRr~~ALklW 143 (764)
+++++|++.... + .++++ .+++............+..++.. . +.......++
T Consensus 190 ~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (400)
T 3vax_A 190 TYLHVDAAQGYGKVPGDLTTPIDMISISGHKIGAPKGVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIM 269 (400)
T ss_dssp CEEEEECTTTTTTSGGGGGSCCSEEEEETGGGTSCSSCEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHH
T ss_pred CEEEEEhhhhcCCCCcChhhcCcEEEEeHHHhCCCCceEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHH
Confidence 899999853210 0 01222 32211000000000000000000 0 0011222222
Q ss_pred ---HHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC---ceeEEEEeeccccccccccccCccCCccHHHH
Q psy13453 144 ---MTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS---MGLVCFRLKVRFWDKLDNLFGTISFGDNDLNK 217 (764)
Q Consensus 144 ---atL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~---l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~ 217 (764)
+++.. ..+++.++.++..++++++.+.|+ .+++++..++. .+++.|+... . +.+++-.
T Consensus 270 a~~~al~~-~~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~--~------------~~~~l~~ 333 (400)
T 3vax_A 270 GLAEAAKI-FEAEHAQWQVAAQDLRSRLLAGLA-STSFQVNGDQDHVVPHILNLSFED--V------------DAEAFLV 333 (400)
T ss_dssp HHHHHHHH-HHHSHHHHHHHHHHHHHHHHHHHT-TTTCEECSCTTSBCTTEEEEECTT--C------------CHHHHHH
T ss_pred HHHHHHHH-HHhhHHHHHHHHHHHHHHHHHhhC-CCCEEEeCCcccCCCCEEEEEeCC--C------------CHHHHHH
Confidence 33332 356789999999999999999999 89999987665 3577886531 0 1222322
Q ss_pred HH-HHHHHhcCcEEEEec----------eeC---CeeEEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13453 218 AV-YDRIIARKVIYIVKG----------SFQ---DRLFMRFAICSSQTEESDVQLGWNEIRTATE 268 (764)
Q Consensus 218 ~L-~~~L~~~G~~~vs~t----------~l~---g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~ 268 (764)
++ ..-+...|..+.... .+. ...++|++++...+++++++.+++.|+++.+
T Consensus 334 ~L~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~ 398 (400)
T 3vax_A 334 TLKDLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKP 398 (400)
T ss_dssp HHHHHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC-------------------
T ss_pred HHhcCcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhc
Confidence 22 222233444333221 011 1368999885666778999999999987653
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=1.3e-07 Score=100.88 Aligned_cols=220 Identities=15% Similarity=0.073 Sum_probs=134.3
Q ss_pred eeeeHHHH--Hhhc--CCCCCCeEEecCCCCCcccHHHHHH-HHHHHh-hCCCCcEE-EEeeCCccccc---ccCchhhh
Q psy13453 20 LIYESFKA--THSL--SGTPDQVRLSGLPDSEWLAYLTLRT-IYESFR-KSFLCPMC-SGYCGRTLHQD---IQSLNAPV 89 (764)
Q Consensus 20 ~~YSv~KA--a~~L--Gl~~~~v~~Vpvd~~~rmD~~aLe~-~I~~~~-~~G~~p~~-VatAGTT~~G~---iDpi~~ia 89 (764)
.||+..++ +..+ |... +.||++ ++.+|+++|++ +|++.. ..+..+-+ +.+.++ ++|. .+++++++
T Consensus 92 ~~~~~~~~~~~~~~~~g~~~---~~v~~~-~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~-~tG~~~~~~~l~~i~ 166 (356)
T 1v72_A 92 SHINNDECGAPEFFSNGAKL---MTVDGP-AAKLDIVRLRERTREKVGDVHTTQPACVSITQAT-EVGSIYTLDEIEAIG 166 (356)
T ss_dssp SHHHHSSTTHHHHHTTSCEE---EECCCG-GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSC-TTSCCCCHHHHHHHH
T ss_pred cchhhhhchHHHHHhCCcEE---EEecCC-CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCC-CCCccCCHHHHHHHH
Confidence 57777777 7777 8765 888886 58999999999 886421 11223444 344454 6999 77788777
Q ss_pred c-----CCCceecccccc--------c---c-----ceeeeecCCCc-c-cc-ccc-cccccC----Cc-ccCCC-Cccc
Q psy13453 90 S-----NGPLKVGGVLRR--------V---Y-----SSCLVPRGQKS-L-RT-TVL-FHFLFQ----HW-QIPLG-RRFR 138 (764)
Q Consensus 90 ~-----~~wlHVDa~l~~--------~---y-----~s~ll~rd~~~-l-~~-~~s-~~~d~~----d~-tle~S-Rr~~ 138 (764)
+ ++|+|+|++... . + ..++.+.-.+. . .+ .+- ...+.. .. ...++ ....
T Consensus 167 ~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~g~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (356)
T 1v72_A 167 DVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATEMSYRRKRAGHLSSKM 246 (356)
T ss_dssp HHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCSSCEEEEESSGGGHHHHHHHHHHTTCCCSST
T ss_pred HHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccCCCcCccEEEEECHHHHhhHHHHhhccCchhhhH
Confidence 5 889999985310 0 0 00111110110 0 00 000 000000 00 00111 1112
Q ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHH
Q psy13453 139 ALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKA 218 (764)
Q Consensus 139 ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~ 218 (764)
.+....++..+..+.|.+++++..++++++.+.|++.+++++..++..+.+.+++. .+
T Consensus 247 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~----------------------~~ 304 (356)
T 1v72_A 247 RFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLD----------------------SA 304 (356)
T ss_dssp HHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEEC----------------------HH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCcEEccCCCccEEEEEcC----------------------HH
Confidence 23333455666556688888999999999999999989999987777777776541 15
Q ss_pred HHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 219 VYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 219 L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
+.++|.++|..+.... +. ..++|++ .+..+++++++.+++.|+++.++
T Consensus 305 ~~~~l~~~gi~v~~g~-~~-~~~iRi~-~~~~~~~~~i~~~~~~l~~~l~~ 352 (356)
T 1v72_A 305 MIDALLKAGFGFYHDR-WG-PNVVRFV-TSFATTAEDVDHLLNQVRLAADR 352 (356)
T ss_dssp HHHHHHHTTCBCBCSS-SS-TTEEEEE-CCTTCCHHHHHHHHHHHHHTC--
T ss_pred HHHHHHhcCeEEeccc-cC-CCeEEEE-ecCCCCHHHHHHHHHHHHHHHHh
Confidence 7778888887543222 22 5689996 66778999999999999877543
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=98.57 E-value=4.2e-07 Score=99.52 Aligned_cols=212 Identities=17% Similarity=0.089 Sum_probs=136.2
Q ss_pred eeeeHHHHHh----hc--CCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc---
Q psy13453 20 LIYESFKATH----SL--SGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS--- 90 (764)
Q Consensus 20 ~~YSv~KAa~----~L--Gl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~--- 90 (764)
.|.|+..+.. .. |... +.||+ +++|+++|++. +-+++.+.+++++|.+.|++++++
T Consensus 128 ~~~~~~~~~~~~~~~~~~g~~~---~~v~~-------~~~l~~~i~~~-----~~~v~~~~~~nptG~~~~l~~i~~l~~ 192 (416)
T 1qz9_A 128 NFPTDLYIAEGLADMLQQGYTL---RLVDS-------PEELPQAIDQD-----TAVVMLTHVNYKTGYMHDMQALTALSH 192 (416)
T ss_dssp SCHHHHHHHHHHHHHHCSSCEE---EEESS-------GGGHHHHCSTT-----EEEEEEESBCTTTCBBCCHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHhcCCceE---EEeCc-------HHHHHHHhCCC-----ceEEEEeccccCcccccCHHHHHHHHH
Confidence 4555555433 33 7654 77776 78888888542 224468889999999999999876
Q ss_pred --CCCceeccccc--------------------cc-----c-c-eeeeecCCC--cccccccc---c---ccc-CCc---
Q psy13453 91 --NGPLKVGGVLR--------------------RV-----Y-S-SCLVPRGQK--SLRTTVLF---H---FLF-QHW--- 129 (764)
Q Consensus 91 --~~wlHVDa~l~--------------------~~-----y-~-s~ll~rd~~--~l~~~~s~---~---~d~-~d~--- 129 (764)
++|+++|++.. ++ . + ++++.++.- .+...... . +++ .++
T Consensus 193 ~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~g~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~ 272 (416)
T 1qz9_A 193 ECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPS 272 (416)
T ss_dssp HHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBC
T ss_pred HcCCEEEEEccccccCcCCChhhcCCCEEEecCcccCCCCCCCeEEEEECHHHHhccCCCccccCccccccCCCCccCCC
Confidence 89999999531 11 0 1 333333221 01100000 0 000 000
Q ss_pred ----ccC-CCCc-ccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcC-C--CeEEeCCC----CceeEEEEeecc
Q psy13453 130 ----QIP-LGRR-FRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQD-D--RFELVCPP----SMGLVCFRLKVR 196 (764)
Q Consensus 130 ----tle-~SRr-~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~-p--~~ell~~P----~l~iV~Fry~P~ 196 (764)
... ++.. .....+++++..+..+++.++.++..++++++.+.|++. | +++++.++ ..++++|++.
T Consensus 273 ~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-- 350 (416)
T 1qz9_A 273 NGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP-- 350 (416)
T ss_dssp SSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT--
T ss_pred cchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecC--
Confidence 111 1121 122356778888877889999999999999999999985 6 89987764 3567777642
Q ss_pred ccccccccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 197 FWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 197 ~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
+ ..++.++|.++|... ...+..++|+++.++.+++++++.+++.|+++.++.
T Consensus 351 --------------~----~~~l~~~l~~~gi~~----~~~~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~~ 402 (416)
T 1qz9_A 351 --------------E----GYAVIQALIDRGVIG----DYREPRIMRFGFTPLYTTFTEVWDAVQILGEILDRK 402 (416)
T ss_dssp --------------T----HHHHHHHHHTTTEEC----EEETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred --------------C----HHHHHHHHHhCCcEe----ccCCCCeEEEeCcccCCCHHHHHHHHHHHHHHHhcc
Confidence 1 246888888888642 223456899988766889999999999999887653
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.9e-07 Score=98.26 Aligned_cols=216 Identities=12% Similarity=0.017 Sum_probs=135.3
Q ss_pred HHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCceeccc
Q psy13453 25 FKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKVGGV 99 (764)
Q Consensus 25 ~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHVDa~ 99 (764)
.+.+...|... +.||++.++.+|+++|++++++ ++-+++.+.+++++|.+.|++++++ ++++++|+.
T Consensus 111 ~~~~~~~g~~~---~~v~~~~~~~~d~~~l~~~~~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~ 182 (376)
T 3f0h_A 111 VQLCEIHEIPY---VALKLEHGKKLTKEKLYEYDNQ-----NFTGLLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCV 182 (376)
T ss_dssp HHHHHHTTCCE---EEEECCTTCCCCHHHHHTTTTS-----CCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECT
T ss_pred HHHHHHcCCce---EEEeCCCCCCCCHHHHHHhhcc-----CceEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEcC
Confidence 35677778776 9999999999999999987643 2234466778899999999999876 899999985
Q ss_pred ccc---cc-----c-eeeeecCCCccccc----c-ccccc-------------cCCcc------c-CCCC-cccH---HH
Q psy13453 100 LRR---VY-----S-SCLVPRGQKSLRTT----V-LFHFL-------------FQHWQ------I-PLGR-RFRA---LK 141 (764)
Q Consensus 100 l~~---~y-----~-s~ll~rd~~~l~~~----~-s~~~d-------------~~d~t------l-e~SR-r~~A---Lk 141 (764)
... .+ + .+++..-.+.+..- + ....+ +.++. . .++. .... ..
T Consensus 183 ~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 262 (376)
T 3f0h_A 183 SAFLADPFNMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQ 262 (376)
T ss_dssp TTTTTSCCCHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHH
T ss_pred ccccCccccccccCccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHH
Confidence 311 00 0 01111111111100 0 00000 00000 0 0111 1122 45
Q ss_pred HHHHHHHccHH-HHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCce-eEEEEeeccccccccccccCccCCccHHHHHH
Q psy13453 142 LWMTLRSYGLK-GLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMG-LVCFRLKVRFWDKLDNLFGTISFGDNDLNKAV 219 (764)
Q Consensus 142 lWatL~~lG~e-Gy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~-iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L 219 (764)
+.+++..+..+ |+.++.++..++++++.+.|++. ++++..++... +++|. |++ .+ ..++
T Consensus 263 ~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~--~~~--------------~~--~~~l 323 (376)
T 3f0h_A 263 INERLKEIKKHGGADAEVARIASQAADFRAKIKDL-PFELVSESPANGVTSVH--PTT--------------AN--AYDI 323 (376)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTS-SEEECCSSBBTTEEEEE--ESS--------------SC--HHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCccCccccCceEEEEe--CCC--------------CC--HHHH
Confidence 67777777777 79999999999999999999987 68877654333 34443 221 11 2468
Q ss_pred HHHHHhc-CcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13453 220 YDRIIAR-KVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATE 268 (764)
Q Consensus 220 ~~~L~~~-G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~ 268 (764)
.++|.++ |..+.......+..++|+++.. .+++++++++++.|+++.+
T Consensus 324 ~~~l~~~~gi~v~~g~~~~~~~~lRis~~~-~~t~e~i~~~~~~l~~~l~ 372 (376)
T 3f0h_A 324 FLKLKDEYGIWICPNGGEMKDTIFRVGHIG-ALTHEDNTTLVNAFKDLQK 372 (376)
T ss_dssp HHHHHHHSSEECEECCGGGTTTCEEEECCS-SCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEecCccccCCCEEEEecCC-CCCHHHHHHHHHHHHHHHH
Confidence 8888888 8754443222345689997544 4689999999999988753
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.57 E-value=6.6e-07 Score=98.93 Aligned_cols=164 Identities=16% Similarity=0.067 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
..+..++.++++++++ .. ...+||+|||+||..|+.+||... + ++-+|+....-
T Consensus 91 ~~~~~~l~~~l~~~~~-~~---------~~v~~~~~g~ea~~~al~~ar~~~-~---------------~~~vi~~~~~y 144 (424)
T 2e7u_A 91 SPLEVALAKKVKRAYP-FV---------DLVRFVNSGTEATMSALRLARGYT-G---------------RPYIVKFRGNY 144 (424)
T ss_dssp CHHHHHHHHHHHHHCT-TC---------CEEEEESSHHHHHHHHHHHHHHHH-C---------------CCEEEEETTCC
T ss_pred CHHHHHHHHHHHHhCC-CC---------CEEEEeCCHHHHHHHHHHHHHHhh-C---------------CCEEEEECCCc
Confidence 4556667778888875 22 257899999999999999887532 1 12245555555
Q ss_pred chhHHHHHH-------------hCCC------ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc
Q psy13453 641 NSSVEKSAI-------------IGDV------PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD 701 (764)
Q Consensus 641 H~Sv~kAa~-------------~lGl------~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD 701 (764)
|....-+.. ..|+ .+..+|. .|+++|+++|++.. ..+.+|+++--...+|.+-
T Consensus 145 hg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~---~~~~~vi~ep~~~~~G~~~ 216 (424)
T 2e7u_A 145 HGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY-----NDPEGLREVLKRRG---EEIAAIIFEPVVGNAGVLV 216 (424)
T ss_dssp CCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT-----TCHHHHHHHHHHHG---GGEEEEEECSSBCTTSCBC
T ss_pred CCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC-----CCHHHHHHHHHhCC---CCEEEEEEeCCCCCCCCcC
Confidence 543222211 1232 2444543 38999999997531 1244566555444589877
Q ss_pred c----HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 702 N----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 702 p----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
| +++|+++ ++||++|++|.+|+++ ...+.+.....|+ ..|-+ +++|+++..+.+|++
T Consensus 217 ~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~-~~di~--s~sK~l~~G~~~G~~ 277 (424)
T 2e7u_A 217 PTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAFGGATELLGL-KPDLV--TLGKILGGGLPAAAY 277 (424)
T ss_dssp CCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSSTTHHHHHHTC-CCSEE--EECGGGGTTSSCEEE
T ss_pred CCHHHHHHHHHH-HHcCCEEEEecCcccc-ccchhHHHHHhCC-Ccchh--hhhhhhhCCcceEEE
Confidence 6 9999999 9999999999999975 3322222222243 35755 557999875556654
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-07 Score=104.97 Aligned_cols=205 Identities=9% Similarity=-0.075 Sum_probs=131.7
Q ss_pred eEEecCC--CCCc-ccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccc-cCchhhhcCCCceecccc-------------
Q psy13453 38 VRLSGLP--DSEW-LAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDI-QSLNAPVSNGPLKVGGVL------------- 100 (764)
Q Consensus 38 v~~Vpvd--~~~r-mD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~i-Dpi~~ia~~~wlHVDa~l------------- 100 (764)
|..||++ +.|+ .|+++++++|++++ -++..+--.|.+|++ .||++++.++++||||.-
T Consensus 140 v~~v~~~~~~~G~~~~~~~~~~~l~~~t-----~lV~~~h~et~tG~~i~pi~~i~~g~~~~vDa~qs~g~~pidv~~~~ 214 (386)
T 3qm2_A 140 PQIIDAKITVDGKRAVKPMREWQLSDNA-----AYLHYCPNETIDGIAIDETPDFGPEVVVTADFSSTILSAPLDVSRYG 214 (386)
T ss_dssp EEEEECEEEETTEEEECCGGGCCCCTTC-----SCEEECSEETTTTEECCCCCCCCTTCCEEEECTTTTTSSCCCGGGCS
T ss_pred eEEEecCcccCCCCCCchHHHhhcCCCC-----cEEEEECCcCCcCEecCchhhhcCCCEEEEEcccccCCCCCCccccC
Confidence 6999999 6776 89998888776532 234466778899995 999999888999999931
Q ss_pred -----cc----ccc-eeeeecCCCccccccccccccCCcc---cCCCC-----cccHHHHHHHHHHccHH-HHHHHHHHH
Q psy13453 101 -----RR----VYS-SCLVPRGQKSLRTTVLFHFLFQHWQ---IPLGR-----RFRALKLWMTLRSYGLK-GLQAYLRKH 161 (764)
Q Consensus 101 -----~~----~y~-s~ll~rd~~~l~~~~s~~~d~~d~t---le~SR-----r~~ALklWatL~~lG~e-Gy~~~i~~~ 161 (764)
.| +.+ ++++.|++- +...-...+.+.+|. -.+.| -..+..+-++++.+-.+ |+.++.++.
T Consensus 215 ~~~~s~hK~lGP~G~g~l~v~~~~-~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~ 293 (386)
T 3qm2_A 215 VIYAGAQKNIGPAGLTLVIVREDL-LGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKIN 293 (386)
T ss_dssp EEEEETTTTTCCTTEEEEEEEGGG-CSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred EEEEecccccCCCccEEEEECHHH-HhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 11 122 345554322 111000011111111 01222 12344667788888777 899999999
Q ss_pred HHHHHHHHHHHhcCCCe-EEeCCCC---ceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEeceeC
Q psy13453 162 ISLAKKFADLVEQDDRF-ELVCPPS---MGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQ 237 (764)
Q Consensus 162 i~lA~~l~~~I~~~p~~-ell~~P~---l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~ 237 (764)
.++++++.+.|++. ++ ....++. ..+++|++... .++..+..+|.+.|.+.. ...+
T Consensus 294 ~~l~~~l~~~l~~~-~~~~~~~~~~~rs~~iv~f~~~~~-----------------~~~~~~~~~L~~~gI~~~--~g~~ 353 (386)
T 3qm2_A 294 QQKAELLYGVIDNS-DFYRNDVAQANRSRMNVPFQLADN-----------------TLDKVFLEESFAAGLHAL--KGHR 353 (386)
T ss_dssp HHHHHHHHHHHHTC-SSEECCBCGGGBCSSEEEEEESSG-----------------GGHHHHHHHHHHTTEECC--BCCT
T ss_pred HHHHHHHHHHHHHC-CCcccCCCHHHcCceEEEEECCCc-----------------cccHHHHHHHHHCCCEEe--CCCC
Confidence 99999999999998 55 3333332 35899987411 122456677888886432 2222
Q ss_pred CeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 238 DRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 238 g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
....+|+++ ...+|+++|+.+++.|+++.++
T Consensus 354 ~~~~iRiS~-~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 354 VVGGMRASI-YNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp TTCSEEEEC-CTTSCHHHHHHHHHHHHHHHHH
T ss_pred CcCeEEEEc-CCCCCHHHHHHHHHHHHHHHHh
Confidence 223499985 5667899999999999998754
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.9e-07 Score=101.38 Aligned_cols=216 Identities=11% Similarity=0.018 Sum_probs=134.9
Q ss_pred HHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc--CCCceecccc----
Q psy13453 27 ATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS--NGPLKVGGVL---- 100 (764)
Q Consensus 27 Aa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~--~~wlHVDa~l---- 100 (764)
.|+-.|.. ++.+|++.++..+++.++.+|+++ +-++..+--.|.+|++-|+ +++ ++++||||.-
T Consensus 121 ~a~~~G~~---~~~~~~~~~~~~~~~~~~~~i~~~-----t~lV~~~h~et~tG~~~pi--i~~~~~~~~~vD~~q~~g~ 190 (377)
T 3e77_A 121 EAKKFGTI---NIVHPKLGSYTKIPDPSTWNLNPD-----ASYVYYCANETVHGVEFDF--IPDVKGAVLVCDMSSNFLS 190 (377)
T ss_dssp HHTTTSEE---EECSCCCSSSCSCCCGGGCCCCTT-----CSCEEEESEETTTTEECSS--CCCCTTCCEEEECTTTTTS
T ss_pred HHHHhCCc---eEEeccCCCcCCCCChHHhccCCC-----ccEEEEeCccCchheEchh--hhccCCCEEEEEcccccCC
Confidence 34444543 366788877788888777666543 2244466777899999999 555 7899999931
Q ss_pred --------------ccc----cc-eeeeecCCCccccccccccccCCccc---CCCCc-----ccHHHHHHHHHHccHH-
Q psy13453 101 --------------RRV----YS-SCLVPRGQKSLRTTVLFHFLFQHWQI---PLGRR-----FRALKLWMTLRSYGLK- 152 (764)
Q Consensus 101 --------------~~~----y~-s~ll~rd~~~l~~~~s~~~d~~d~tl---e~SRr-----~~ALklWatL~~lG~e- 152 (764)
.|+ .+ ++++.|++- +...-...+.+.+|.. ..+|. +.+..+-++++++=.+
T Consensus 191 ~~id~~~~~~~~~s~~K~~gp~G~g~l~~~~~~-l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~G 269 (377)
T 3e77_A 191 KPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDL-LGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNG 269 (377)
T ss_dssp SCCCGGGCSEEEEEGGGTTSCTTCEEEEEETTS-CSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCchhhcCEEEEecccccCCCccEEEEEcHHH-HhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHcc
Confidence 111 11 355555432 2111000112222211 12221 1233566778877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEeC-CCC--c-eeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCc
Q psy13453 153 GLQAYLRKHISLAKKFADLVEQDDRFELVC-PPS--M-GLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKV 228 (764)
Q Consensus 153 Gy~~~i~~~i~lA~~l~~~I~~~p~~ell~-~P~--l-~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~ 228 (764)
|+.++.++..++++++.+.|+++|++++.. +++ . .+++|++.. .. ...+++..+.+.+.+.|.
T Consensus 270 G~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~--~~-----------~~~~~~~~~l~~l~~~Gi 336 (377)
T 3e77_A 270 GAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIGN--AK-----------GDDALEKRFLDKALELNM 336 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEEEESS--TT-----------CCHHHHHHHHHHHHHTTE
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEEEcCC--CC-----------CchhHHHHHHHHHHHCCc
Confidence 899999999999999999999999998643 222 3 369998741 00 012355567788888887
Q ss_pred EEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 229 IYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 229 ~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
+... ..+....+|+++.+ .+++++|+.+++.|+++.++
T Consensus 337 ~~~~--g~~~~g~iRiS~~~-~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 337 LSLK--GHRSVGGIRASLYN-AVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp ESCB--CCTTTCSEEEECCT-TSCHHHHHHHHHHHHHHHHH
T ss_pred EEeC--CCCcCCEEEEECCC-CCCHHHHHHHHHHHHHHHHH
Confidence 4322 22223459998654 67899999999999988754
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=9.4e-07 Score=94.20 Aligned_cols=216 Identities=9% Similarity=-0.024 Sum_probs=129.8
Q ss_pred eeeeHHH--HHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHh-hCCCCcEE-EEeeCCcccccccC---chhhhc--
Q psy13453 20 LIYESFK--ATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFR-KSFLCPMC-SGYCGRTLHQDIQS---LNAPVS-- 90 (764)
Q Consensus 20 ~~YSv~K--Aa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~-~~G~~p~~-VatAGTT~~G~iDp---i~~ia~-- 90 (764)
.|+++.+ +++..|... +.||++ ++.+|+++|+++|++.. ..|..+-+ +.+.+ +++|.+-| ++++.+
T Consensus 99 ~~~~~~~~~~~~~~g~~~---~~v~~~-~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~ 173 (359)
T 1svv_A 99 GHISTHETGAIEATGHKV---VTAPCP-DGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGTQYTKQELEDISASC 173 (359)
T ss_dssp SHHHHSSTTHHHHTTCCE---EEECCT-TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHhcCCCee---EEEeCC-CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCceecCHHHHHHHHHHH
Confidence 4666666 477888865 999987 78999999999998741 12222434 34445 58999988 666654
Q ss_pred ---CCCceecccc-----ccc-c-c----------eeeeecCCCc-ccc--cccccccc----------CCcccCCCCcc
Q psy13453 91 ---NGPLKVGGVL-----RRV-Y-S----------SCLVPRGQKS-LRT--TVLFHFLF----------QHWQIPLGRRF 137 (764)
Q Consensus 91 ---~~wlHVDa~l-----~~~-y-~----------s~ll~rd~~~-l~~--~~s~~~d~----------~d~tle~SRr~ 137 (764)
++|+|+|++. ... . . .+.+...+-. ... .+....+. ..++.. ...
T Consensus 174 ~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~--~~~ 251 (359)
T 1svv_A 174 KEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHLIKQRGALMA--KGW 251 (359)
T ss_dssp HHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEEEECSGGGCTTHHHHHHHTTCCCT--TTH
T ss_pred HHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccCCCCCceEEEEEcccHHHHHHHHHhcCCcccc--cch
Confidence 8999999964 100 0 0 0111000000 000 00000000 111111 111
Q ss_pred cHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHH
Q psy13453 138 RALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNK 217 (764)
Q Consensus 138 ~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~ 217 (764)
.....++ ..+..+++.++.++..++++++.+.| +.++++++.+...+.+.++.. .
T Consensus 252 ~~~~~~~--~~l~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~~~~----------------------~ 306 (359)
T 1svv_A 252 LLGIQFE--VLMKDNLFFELGAHSNKMAAILKAGL-EACGIRLAWPSASNQLFPILE----------------------N 306 (359)
T ss_dssp HHHHHHH--HHTSTTHHHHHHHHHHHHHHHHHHHH-HHTTCCBSSCCSSSEECBEEE----------------------H
T ss_pred hhHHHHH--HHHhhhhHHHHHHHHHHHHHHHHHHh-ccCCeEEccCCccceEEEEcC----------------------H
Confidence 1111122 23555678899999999999999999 568998876666665555321 2
Q ss_pred HHHHHHHhc-CcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 218 AVYDRIIAR-KVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 218 ~L~~~L~~~-G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
++.++|.++ |..+.... -.+..++|++ .+..+++++++.+++.|+++.++
T Consensus 307 ~~~~~l~~~~gi~v~~~~-~~~~~~iRi~-~~~~~~~~~i~~~~~~l~~~~~~ 357 (359)
T 1svv_A 307 TMIAELNNDFDMYTVEPL-KDGTCIMRLC-TSWATEEKECHRFVEVLKRLVAS 357 (359)
T ss_dssp HHHHHHTTTEECEEEEEE-TTTEEEEEEE-CCTTCCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHhcCEEEEecc-cCCCceEEEE-ccCcCCHHHHHHHHHHHHHHHhc
Confidence 678888888 88663221 2356789997 55567899999999999887543
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=7.6e-07 Score=96.66 Aligned_cols=224 Identities=11% Similarity=0.076 Sum_probs=138.2
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCC--CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccc---cCchhhhc----
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPD--SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDI---QSLNAPVS---- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~--~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~i---Dpi~~ia~---- 90 (764)
.|.++.++++..|... +.||+++ ++.+|+++|+++|++. +-+++-+.++.++|.+ ++++++++
T Consensus 123 ~~~~~~~~~~~~g~~~---~~v~~~~~~~~~~d~~~l~~~l~~~-----~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~ 194 (388)
T 1j32_A 123 FWVSYPEMVKLAEGTP---VILPTTVETQFKVSPEQIRQAITPK-----TKLLVFNTPSNPTGMVYTPDEVRAIAQVAVE 194 (388)
T ss_dssp CCTHHHHHHHHTTCEE---EEECCCGGGTTCCCHHHHHHHCCTT-----EEEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHcCCEE---EEecCCcccCCCCCHHHHHHhcCcC-----ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHH
Confidence 5778899999999866 9999985 6789999999999642 2244456688899998 66777765
Q ss_pred -CCCceeccccccc-c-----ce------------eeeecCCCccc-cccccccccC---------CcccCCCCcccHHH
Q psy13453 91 -NGPLKVGGVLRRV-Y-----SS------------CLVPRGQKSLR-TTVLFHFLFQ---------HWQIPLGRRFRALK 141 (764)
Q Consensus 91 -~~wlHVDa~l~~~-y-----~s------------~ll~rd~~~l~-~~~s~~~d~~---------d~tle~SRr~~ALk 141 (764)
++|+++|...... + .+ +++..-.+.+- ..+...+-+. ...-.++-....+.
T Consensus 195 ~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~ 274 (388)
T 1j32_A 195 AGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFA 274 (388)
T ss_dssp HTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCHHHHHHHHHHHHTTTCSCCHHH
T ss_pred cCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcccceEEEEeCHHHHHHHHHHHhhcccCCCHHH
Confidence 8999999864211 0 00 11111111110 0000000000 00001111233455
Q ss_pred HHHHHHHc--cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHH
Q psy13453 142 LWMTLRSY--GLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAV 219 (764)
Q Consensus 142 lWatL~~l--G~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L 219 (764)
.++++..+ +.+.+.++.++..+.++++.+.|++.|+++++. |.-+.++|-..+.. +.+ ..++
T Consensus 275 ~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~~~~~~~~~~~~-------------~~~--~~~~ 338 (388)
T 1j32_A 275 QYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPK-PDGAFYMFPSIAKT-------------GRS--SLDF 338 (388)
T ss_dssp HHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCC-CCBTTEECCBCGGG-------------TCC--HHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhCCCCcccC-CCeeEEEEEecCCC-------------CCC--HHHH
Confidence 55544443 567788889999999999999999988988654 44444433211100 011 2467
Q ss_pred HHHHHh-cCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 220 YDRIIA-RKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 220 ~~~L~~-~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
.++|.+ .|..+..........++|+++. +++++++++++.|+++.+++
T Consensus 339 ~~~l~~~~gi~v~~g~~~~~~~~iRis~~---~~~~~i~~~~~~l~~~l~~~ 387 (388)
T 1j32_A 339 CSELLDQHQVATVPGAAFGADDCIRLSYA---TDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp HHHHHHHHCEECEEGGGGTCTTBEEEECC---SCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEeChhhhCCCCcEEEEec---CCHHHHHHHHHHHHHHHHHh
Confidence 788876 6876554433333468999875 57999999999998887654
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=6.7e-07 Score=98.69 Aligned_cols=223 Identities=8% Similarity=-0.018 Sum_probs=131.0
Q ss_pred eeeeHHHHHhh----cCCCCCCeEEecCCC-CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc----
Q psy13453 20 LIYESFKATHS----LSGTPDQVRLSGLPD-SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS---- 90 (764)
Q Consensus 20 ~~YSv~KAa~~----LGl~~~~v~~Vpvd~-~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~---- 90 (764)
.|+|+.++... .|... +.||+++ ++++|+++|+++|++. +-+++.+.+++++|.+.|++++++
T Consensus 132 ~h~s~~~~~~~~~~~~g~~v---~~v~~~~~~~~~d~~~l~~~i~~~-----~~~v~~~~~~nptG~~~~~~~i~~l~~~ 203 (432)
T 3a9z_A 132 EHDSIRLPLEHLVEDQVAEV---TFVPVSKVNGQVEVEDILAAVRPT-----TCLVTIMLANNETGVIMPISEISRRIKA 203 (432)
T ss_dssp CCHHHHHHHHHHHHTTSCEE---EEECCCTTTSSCCHHHHHHTCCTT-----EEEEECCSBCTTTCBBCCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhcCcEE---EEEecCcccCCcCHHHHHHhccCC-----ceEEEEECcccCcccccCHHHHHHHHHh
Confidence 68888776654 46655 8999986 8899999999998642 224468889999999999999875
Q ss_pred -C----------CCceeccccc--------------------cc----cceeeeecCCCccccccccccccCCc----cc
Q psy13453 91 -N----------GPLKVGGVLR--------------------RV----YSSCLVPRGQKSLRTTVLFHFLFQHW----QI 131 (764)
Q Consensus 91 -~----------~wlHVDa~l~--------------------~~----y~s~ll~rd~~~l~~~~s~~~d~~d~----tl 131 (764)
+ +|+|+|++.. ++ .+++++.++..... .+. ..+..+ ..
T Consensus 204 ~~~~~~~~~~~~~~livDea~~~~~~~~~~~~~~~d~~~~s~~K~~g~~~G~~~~~~~~~~~-~~~--~~~~~~~~~~~~ 280 (432)
T 3a9z_A 204 LNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYGPRIGALYVRGVGKLT-PLY--PMLFGGGQERNF 280 (432)
T ss_dssp HHHHHHHHTCCCCEEEEECTTTTTTSCCCHHHHCCSEEEEEGGGTTCCSCEEEEETTBTTTB-CCC--CSCCSSCGGGGT
T ss_pred cCcccccccCCceEEEEEchhhhCCcccChhhcCCCEEEEehhHhcCCcceEEEEccccccC-CcC--ceeecCCccccc
Confidence 6 9999999531 11 01334333221000 000 000000 00
Q ss_pred -CCCCcccHH-HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe--CCC----C-ceeEEEEeecccccccc
Q psy13453 132 -PLGRRFRAL-KLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELV--CPP----S-MGLVCFRLKVRFWDKLD 202 (764)
Q Consensus 132 -e~SRr~~AL-klWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell--~~P----~-l~iV~Fry~P~~~~~~~ 202 (764)
.++-...++ .+.+++..+ .+++.++.++..++++++.+.|++.+++++. .++ . -++++|.+...+
T Consensus 281 ~~~~~~~~~~~a~~aal~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 354 (432)
T 3a9z_A 281 RPGTENTPMIAGLGKAADLV-SENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQ----- 354 (432)
T ss_dssp SCSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTT-----
T ss_pred cCCCcCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCC-----
Confidence 011111122 334445544 5688999999999999999999987665443 331 1 237888764211
Q ss_pred ccccCccCCccHHHHHHHHHHH----hcCcEEEEe-----------cee---CCeeEEEEeccCCCCCHHHHHHHHHHHH
Q psy13453 203 NLFGTISFGDNDLNKAVYDRII----ARKVIYIVK-----------GSF---QDRLFMRFAICSSQTEESDVQLGWNEIR 264 (764)
Q Consensus 203 ~~~~~~~~~~d~~n~~L~~~L~----~~G~~~vs~-----------t~l---~g~~~LRi~v~np~Tt~e~i~~~l~~l~ 264 (764)
.+ ...+.+++. +.|..+... ..+ .+..++|+++. ..+++++++.+++.|+
T Consensus 355 ---------~~--~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~-~~~t~eei~~~~~~l~ 422 (432)
T 3a9z_A 355 ---------LR--GYMVLAQCQTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVG-RSTTRAEVDLIVQDLK 422 (432)
T ss_dssp ---------CC--HHHHHHHCSSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECC-TTCCHHHHHHHHHHHH
T ss_pred ---------Cc--HHHHHHHhcCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcC-CCCCHHHHHHHHHHHH
Confidence 00 012222221 111100000 000 01258999765 5678999999999999
Q ss_pred HHHHHHH
Q psy13453 265 TATEEVL 271 (764)
Q Consensus 265 ~~~~~i~ 271 (764)
++.+++.
T Consensus 423 ~~~~~~~ 429 (432)
T 3a9z_A 423 QAVNQLE 429 (432)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9877654
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=98.47 E-value=8.3e-07 Score=96.08 Aligned_cols=222 Identities=7% Similarity=-0.014 Sum_probs=137.6
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCC---CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccc---cCchhhhc---
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLP---DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDI---QSLNAPVS--- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd---~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~i---Dpi~~ia~--- 90 (764)
.|.++..++..+|... +.+|++ .++++|+++|+++|++. ++-+++-+.++.++|.+ ++++++++
T Consensus 118 ~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~d~~~l~~~l~~~----~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~ 190 (391)
T 3dzz_A 118 VYNMFYSVIEGNGRRV---ISSDLIYENSKYSVNWADLEEKLATP----SVRMMVFCNPHNPIGYAWSEEEVKRIAELCA 190 (391)
T ss_dssp CCHHHHHHHHHTTCEE---EECCCEEETTEEECCHHHHHHHHTST----TEEEEEEESSBTTTTBCCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHcCCEE---EEeeeeecCCceeecHHHHHHHHhcc----CceEEEEECCCCCCCcccCHHHHHHHHHHHH
Confidence 5778889999999877 899985 34469999999999731 12244457789999999 88888875
Q ss_pred --CCCceeccccccc-c-----ce------------eeeecCCCcc--cc---ccccc--cc----cCC----cccCCCC
Q psy13453 91 --NGPLKVGGVLRRV-Y-----SS------------CLVPRGQKSL--RT---TVLFH--FL----FQH----WQIPLGR 135 (764)
Q Consensus 91 --~~wlHVDa~l~~~-y-----~s------------~ll~rd~~~l--~~---~~s~~--~d----~~d----~tle~SR 135 (764)
++++++|.+.... + .+ +++..-.+.+ .+ .+-.. .+ +.. .+.-+.-
T Consensus 191 ~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (391)
T 3dzz_A 191 KHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESFFLAGIGEPN 270 (391)
T ss_dssp HTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHHHHHTCSSCC
T ss_pred HCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEEEECCHHHHHHHHHHHHhhccCCCC
Confidence 8999999964211 0 00 1111101110 00 00000 00 000 0111111
Q ss_pred cccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEeCCCCceeEE-EEeeccccccccccccCccCCcc
Q psy13453 136 RFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQ-DDRFELVCPPSMGLVC-FRLKVRFWDKLDNLFGTISFGDN 213 (764)
Q Consensus 136 r~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~-~p~~ell~~P~l~iV~-Fry~P~~~~~~~~~~~~~~~~~d 213 (764)
......+.+++.. +.+.+.++.++..+.++++.+.|++ .|++++.. |.-+.+. +++... ..+
T Consensus 271 ~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~--------------~~~ 334 (391)
T 3dzz_A 271 LLAIPAAIAAYEE-GHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLD-SNASYLAWVDISAL--------------GMN 334 (391)
T ss_dssp TTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECC-CCBSSEEEEECGGG--------------CSC
T ss_pred HHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEec-cCceEEEEEehhhc--------------CCC
Confidence 2222333444544 6677889999999999999999999 89999765 4444444 444211 011
Q ss_pred HHHHHHHHHHH-hcCcEEEEecee--CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 214 DLNKAVYDRII-ARKVIYIVKGSF--QDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 214 ~~n~~L~~~L~-~~G~~~vs~t~l--~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
..++.++|. +.|..+...... .+..++|+++. +++++++.+++.|.++.++
T Consensus 335 --~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~---~~~~~i~~~l~~l~~~l~~ 388 (391)
T 3dzz_A 335 --AEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLA---CPKELVIDGMQRLKQGVLN 388 (391)
T ss_dssp --HHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECC---SCHHHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec---CCHHHHHHHHHHHHHHHHH
Confidence 246788885 788765543333 23578999877 5789999999999887654
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=98.44 E-value=2.7e-06 Score=91.52 Aligned_cols=214 Identities=9% Similarity=0.018 Sum_probs=135.1
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccc---cCchhhhc----C-
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDI---QSLNAPVS----N- 91 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~i---Dpi~~ia~----~- 91 (764)
.|.++..++..+|... +.||+++++.+|+++|+++|++. ++-+++-+.++.++|.+ +++.++++ +
T Consensus 118 ~~~~~~~~~~~~g~~~---~~v~~~~~~~~d~~~l~~~l~~~----~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~ 190 (367)
T 3euc_A 118 GFVMYAMSAQFAGLEF---VGVPLRADFTLDRGAMLAAMAEH----QPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSV 190 (367)
T ss_dssp CSCCSCHHHHTTTCEE---EEEECCTTSCCCHHHHHHHHHHH----CCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTS
T ss_pred CHHHHHHHHHHcCCeE---EEecCCCCCCCCHHHHHHHhhcc----CCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcC
Confidence 4567778889999877 99999999999999999999873 12245456788999998 55666643 3
Q ss_pred --CCceecccccccc-----------ce-eeeecCCCcccccccccc-----c----cCCcccCCCCcccHHHHHHHHHH
Q psy13453 92 --GPLKVGGVLRRVY-----------SS-CLVPRGQKSLRTTVLFHF-----L----FQHWQIPLGRRFRALKLWMTLRS 148 (764)
Q Consensus 92 --~wlHVDa~l~~~y-----------~s-~ll~rd~~~l~~~~s~~~-----d----~~d~tle~SRr~~ALklWatL~~ 148 (764)
+++++|.+..... .. +++..-.+.....+...+ + +....... ....+..+++...
T Consensus 191 ~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~ 268 (367)
T 3euc_A 191 CRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKLGLAGIRLGYVAGDPQWLEQLDKVRPPY--NVNVLTEATALFA 268 (367)
T ss_dssp CBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCTTSCSCCEEEEEECHHHHHHHGGGCCSS--CCCHHHHHHHHHH
T ss_pred CCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhhcccccCceeeeeCHHHHHHHHHhCCCC--CCCHHHHHHHHHH
Confidence 8999998642110 00 111111111110000000 0 00000001 1334444444333
Q ss_pred cc-HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcC
Q psy13453 149 YG-LKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARK 227 (764)
Q Consensus 149 lG-~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G 227 (764)
+- .+.+.++.++..++++++.+.+++.|++++ .++.-+.+.+++. + ..++.++|.+.|
T Consensus 269 l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~-~~~~~~~~~~~~~------------------~--~~~l~~~l~~~g 327 (367)
T 3euc_A 269 LEHVAVLDEQAAQLRAERSRVAEGMAAHGGVTV-FPSAANFLLARVP------------------D--AAQTFDRLLARK 327 (367)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHTSTTCEE-CCCSSSEEEEECS------------------C--HHHHHHHHHTTT
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEE-CCCCCeEEEEECC------------------C--HHHHHHHHHHCC
Confidence 32 566788999999999999999999999994 4555555655441 0 246788888899
Q ss_pred cEEEEecee--CCeeEEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13453 228 VIYIVKGSF--QDRLFMRFAICSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 228 ~~~vs~t~l--~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~ 267 (764)
..+...... .+..++|+++. ++++++.+++.|+++.
T Consensus 328 i~v~~~~~~~~~~~~~iRis~~----~~~~i~~~~~~l~~~l 365 (367)
T 3euc_A 328 VLIKNVSKMHPLLANCLRVTVS----TPEENAQFLEAFAASL 365 (367)
T ss_dssp EECEECGGGCGGGTTEEEEECC----CHHHHHHHHHHHHHHT
T ss_pred eEEEECCccCCCCCCEEEEecC----CHHHHHHHHHHHHHHh
Confidence 865543332 23468999865 7999999999998763
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.5e-06 Score=93.49 Aligned_cols=216 Identities=10% Similarity=0.059 Sum_probs=130.6
Q ss_pred eee--HHHHHhhcCCCCCCeEEecCCC--CC--cccHHHHHHHHHHHhhCCCCcEEEEeeCCccccc-ccCchhhhcCCC
Q psy13453 21 IYE--SFKATHSLSGTPDQVRLSGLPD--SE--WLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQD-IQSLNAPVSNGP 93 (764)
Q Consensus 21 ~YS--v~KAa~~LGl~~~~v~~Vpvd~--~~--rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~-iDpi~~ia~~~w 93 (764)
+|+ +...++.+| .. +.||++. ++ ..|.++++ |++ ++-+++-+.+++++|. ++||+++ .++|
T Consensus 102 ~~~~~~~~~~~~~g-~~---~~v~~~~~~~~~~~~~~~~~~--i~~-----~t~~v~~~~~~n~tG~~~~~l~~i-~~~~ 169 (362)
T 2c0r_A 102 SWASKALKEAKLIG-DT---HVAASSEASNYMTLPKLQEIQ--LQD-----NAAYLHLTSNETIEGAQFKAFPDT-GSVP 169 (362)
T ss_dssp HHHHHHHHHHHHHS-CE---EEEEECGGGTTCSCCCGGGCC--CCT-----TEEEEEEESEETTTTEECSSCCCC-TTSC
T ss_pred cHhHHHHHHHHHhC-Ce---EEEecccccccccCCCHHHcc--cCC-----CcCEEEEeCCcCccceeccccccc-CCCE
Confidence 455 346777788 66 8899872 23 35666554 422 2223456777999999 5999999 7899
Q ss_pred ceeccccc------------------cc-c---c-eeeeecCCCccccccccccccCCc-------ccCCCC-cccHHHH
Q psy13453 94 LKVGGVLR------------------RV-Y---S-SCLVPRGQKSLRTTVLFHFLFQHW-------QIPLGR-RFRALKL 142 (764)
Q Consensus 94 lHVDa~l~------------------~~-y---~-s~ll~rd~~~l~~~~s~~~d~~d~-------tle~SR-r~~ALkl 142 (764)
+|||++.. ++ | + ++++.+.. ...........+.++ ...++- ......+
T Consensus 170 vivD~a~~~~~~~~~~~~~d~~~~s~~K~~g~~G~G~l~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~ 248 (362)
T 2c0r_A 170 LIGDMSSDILSRPFDLNQFGLVYAGAQKNLGPSGVTVVIVRED-LVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMV 248 (362)
T ss_dssp EEEECTTTTTSSCCCGGGCSEEEEETTTTTCCSSCEEEEEEGG-GSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHH
T ss_pred EEEEChhhccCCccchhHCcEEEEeccccccCcCcEEEEEcHH-HHhhccccCchHHhHHHHhhccCcCCCchHHHHHHH
Confidence 99999521 11 1 1 23333221 110000000000100 111222 1223455
Q ss_pred HHHHHHccHH-HHHHHHHHHHHHHHHHHHHHhcCCCe-EEeCCC---CceeEEEEeeccccccccccccCccCCccHHHH
Q psy13453 143 WMTLRSYGLK-GLQAYLRKHISLAKKFADLVEQDDRF-ELVCPP---SMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNK 217 (764)
Q Consensus 143 WatL~~lG~e-Gy~~~i~~~i~lA~~l~~~I~~~p~~-ell~~P---~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~ 217 (764)
.++++.+-.+ |+.++.++..++++++.+.|++.+++ ++..++ ...+++|++.. ..-..
T Consensus 249 ~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~ 311 (362)
T 2c0r_A 249 NEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLAS-----------------EELEK 311 (362)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSC-----------------HHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCChHHcCCcEEEEEcCC-----------------cchHH
Confidence 6667666555 89999999999999999999998656 876543 34567776521 11235
Q ss_pred HHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 218 AVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 218 ~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
++.++|.+.|.+... .......+|+++.+.+ ++++++.+++.|+++.++
T Consensus 312 ~~~~~L~~~gi~~~~--g~~~~~~iRis~~~~~-~~e~i~~l~~~l~~~~~~ 360 (362)
T 2c0r_A 312 EFVKASEQEGFVGLK--GHRSVGGLRASIYNAV-PYESCEALVQFMEHFKRS 360 (362)
T ss_dssp HHHHHHHHTTEESCB--CCTTTCSEEEECCTTS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeecc--CCCCCCEEEEECCCCC-CHHHHHHHHHHHHHHHHh
Confidence 788888888874322 2222346999887644 599999999999987654
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.43 E-value=3.1e-06 Score=91.85 Aligned_cols=220 Identities=10% Similarity=-0.023 Sum_probs=143.3
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccCchhhhc-----CCC
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQSLNAPVS-----NGP 93 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDpi~~ia~-----~~w 93 (764)
.|.++..+++..|... +.+|. +|+++|+++|++....|..+-+ +-+.++.++|.+.|++++++ ++|
T Consensus 136 ~~~~~~~~~~~~g~~~---~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~ 207 (399)
T 3tqx_A 136 NHASIIDGIRLCKAQR---YRYKN-----NAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLADKYNAL 207 (399)
T ss_dssp CCHHHHHHHHSCCSEE---EEECT-----TCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTCE
T ss_pred ccHHHHHHHHHcCCce---eEeCC-----CCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCE
Confidence 6888999999999866 77776 5789999999987665544555 67778899999999999886 899
Q ss_pred ceeccccccc-cc----e------------eeeecCCCccc---ccccc-ccc--------cCCcccCCCCcccHH---H
Q psy13453 94 LKVGGVLRRV-YS----S------------CLVPRGQKSLR---TTVLF-HFL--------FQHWQIPLGRRFRAL---K 141 (764)
Q Consensus 94 lHVDa~l~~~-y~----s------------~ll~rd~~~l~---~~~s~-~~d--------~~d~tle~SRr~~AL---k 141 (764)
+++|.+.... ++ + +++..-.+.+- ..+-. ..+ ...+...+ ....+ .
T Consensus 208 li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~gG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 285 (399)
T 3tqx_A 208 VMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGASGGYTSGHKEIIEWLRNRSRPYLFSN--TVAPVIVAT 285 (399)
T ss_dssp EEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCSSCCEEEEECHHHHHHHHHHCHHHHSSC--CCCHHHHHH
T ss_pred EEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcccCceEEEEcCHHHHHHHHHhCcceeccC--CCcHHHHHH
Confidence 9999965211 10 0 11111111111 10000 000 00111111 22222 3
Q ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHH
Q psy13453 142 LWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYD 221 (764)
Q Consensus 142 lWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~ 221 (764)
+.+++..+. +++.++.++..+.++++.+.|++. +++++ ++..+++.|++.. ..-..++.+
T Consensus 286 ~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~-----------------~~~~~~~~~ 345 (399)
T 3tqx_A 286 SLKVLELLK-TEGPQLRKQLQENSRYFRAGMEKL-GFQLV-PGNHPIIPVMLGD-----------------AQLATNMAD 345 (399)
T ss_dssp HHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCSSSEEEEEEEC-----------------HHHHHHHHH
T ss_pred HHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHc-CCCcC-CCCCCEEEEEeCC-----------------HHHHHHHHH
Confidence 344454443 668888999999999999999987 77765 6777777776531 112367888
Q ss_pred HHHhcCcEEEEece---eCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 222 RIIARKVIYIVKGS---FQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 222 ~L~~~G~~~vs~t~---l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
+|.++|..+..... -.+..++|+++.. .+++++++.+++.|+++.+++
T Consensus 346 ~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~-~~~~~~i~~~~~~l~~~~~~~ 396 (399)
T 3tqx_A 346 HLLQEGIYVVGFSYPVVPMGKARIRVQMSA-VHTQQQLDRAIEAFGQVGKKL 396 (399)
T ss_dssp HHHHTTEECCEECTTTSCTTCEEEEEECCT-TCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCEEeeeCCCCCCCCCceEEEEeec-CCCHHHHHHHHHHHHHHHHHh
Confidence 89998875443211 2345799997654 668999999999999887653
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=98.42 E-value=4.7e-06 Score=89.53 Aligned_cols=215 Identities=7% Similarity=-0.043 Sum_probs=137.5
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-------CC
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-------NG 92 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-------~~ 92 (764)
.|.++.+++...|... +.||+++++.+|+++|+++|++. +-+++-+.++.++|.+-|++++.+ ++
T Consensus 117 ~~~~~~~~~~~~g~~~---~~v~~~~~~~~d~~~l~~~i~~~-----~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~ 188 (363)
T 3ffh_A 117 TFVQYRQNALIEGAEV---REIPLLQDGEHDLEGMLNAIDEK-----TTIVWICNPNNPTGNYIELADIQAFLDRVPSDV 188 (363)
T ss_dssp SCHHHHHHHHHHTCEE---EEEECCTTSCCCHHHHHHHCCTT-----EEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTS
T ss_pred ChHHHHHHHHHcCCEE---EEecCCCCCCcCHHHHHHhcccC-----CCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCc
Confidence 4677889999999877 99999988999999999999643 224445778999999988887654 67
Q ss_pred Cceeccccccc-cc---e-----------eeeecCCCccc-cccccccccCCc-------ccCCCCcccHHHHHHHHHHc
Q psy13453 93 PLKVGGVLRRV-YS---S-----------CLVPRGQKSLR-TTVLFHFLFQHW-------QIPLGRRFRALKLWMTLRSY 149 (764)
Q Consensus 93 wlHVDa~l~~~-y~---s-----------~ll~rd~~~l~-~~~s~~~d~~d~-------tle~SRr~~ALklWatL~~l 149 (764)
++++|...... ++ + +++..-.+.+- .-+...+-+.+. ....+-....+..++....+
T Consensus 189 ~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 268 (363)
T 3ffh_A 189 LVVLDEAYIEYVTPQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADKEIIRQLNIVRPPFNTTSIGQKLAIEAI 268 (363)
T ss_dssp EEEEECTTGGGCSSCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEECHHHHHHHHHTCCSCCCBHHHHHHHHHHH
T ss_pred EEEEeCchHhhcCccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecCHHHHHHHHHhCCCCCCCHHHHHHHHHHh
Confidence 89999864310 00 0 00111111110 000000000000 00001124445555554444
Q ss_pred c-HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCc
Q psy13453 150 G-LKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKV 228 (764)
Q Consensus 150 G-~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~ 228 (764)
. .+.+.++.++..+..+++.+.++++++++++ ++.-+.+.|++. . + ..++.++|.++|.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~~~~~~~~~~----------------~-~--~~~~~~~l~~~gi 328 (363)
T 3ffh_A 269 KDQAFIGECRTSNANGIKQYEAFAKRFEKVKLY-PANGNFVLIDLG----------------I-E--AGTIFSYLEKNGY 328 (363)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEC-CCCSSEEEEECS----------------S-C--HHHHHHHHHHTTE
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhhCCCceEC-CCCCeEEEEECC----------------C-C--HHHHHHHHHHCCe
Confidence 2 3667888888999999999999998899975 455566666542 1 1 2467888888887
Q ss_pred EEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 229 IYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 229 ~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
.+..........++|+++. ++++++.+++.|+++
T Consensus 329 ~v~~g~~~~~~~~iRis~~----~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 329 ITRSGAALGFPTAVRITIG----KEEDNSAVIALLEKL 362 (363)
T ss_dssp ECEETTTTTCTTEEEEECC----CHHHHHHHHHHHHHH
T ss_pred EEEeCccCCCCCeEEEECC----CHHHHHHHHHHHHHh
Confidence 6554443333578999865 889999999998764
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.6e-06 Score=94.44 Aligned_cols=224 Identities=10% Similarity=0.033 Sum_probs=137.3
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecC------CCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccC---chhhhc
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGL------PDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQS---LNAPVS 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpv------d~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDp---i~~ia~ 90 (764)
.|.++..+++..|... +.+|+ ++++.+|+++|+++|++. +-+++-+.++.++|.+=| ++++++
T Consensus 135 ~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~d~~~l~~~l~~~-----~~~v~~~~p~nptG~~~~~~~l~~i~~ 206 (407)
T 3nra_A 135 DYFANRKLVEFFEGEM---VPVQLDYVSADETRAGLDLTGLEEAFKAG-----ARVFLFSNPNNPAGVVYSAEEIGQIAA 206 (407)
T ss_dssp CCTHHHHHHHHTTCEE---EEEEBCCCSSCCSSCCBCHHHHHHHHHTT-----CCEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred cccchHHHHHHcCCEE---EEeecccccccCcCCCcCHHHHHHHHhhC-----CcEEEEcCCCCCCCcccCHHHHHHHHH
Confidence 5778899999999877 89998 478899999999999862 234555667899999977 666665
Q ss_pred -----CCCceeccccccc-cc-----e------------eeeecCCCccc-cccccccccCC---------cccCCCCcc
Q psy13453 91 -----NGPLKVGGVLRRV-YS-----S------------CLVPRGQKSLR-TTVLFHFLFQH---------WQIPLGRRF 137 (764)
Q Consensus 91 -----~~wlHVDa~l~~~-y~-----s------------~ll~rd~~~l~-~~~s~~~d~~d---------~tle~SRr~ 137 (764)
++++++|.+.... |. + +++..-.+.+- .-+...+-..+ ..-..+-..
T Consensus 207 ~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~ 286 (407)
T 3nra_A 207 LAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRA 286 (407)
T ss_dssp HHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEECHHHHHHHHHHHHHHTSSS
T ss_pred HHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEcCHHHHHHHHHHHhhhccCC
Confidence 8999999965321 11 1 01111111110 00000000000 000000111
Q ss_pred cHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHH
Q psy13453 138 RALKLWMTLRSY--GLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDL 215 (764)
Q Consensus 138 ~ALklWatL~~l--G~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~ 215 (764)
..+..++....+ +.+.+.++.++..++++++.+.++++++++++.+..-..+.+++... ..+
T Consensus 287 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~-- 350 (407)
T 3nra_A 287 AGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKL--------------AVA-- 350 (407)
T ss_dssp CHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCCCSBSSEECCBCCCB--------------SSC--
T ss_pred ChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEEEEEeCCCC--------------CCC--
Confidence 233444444444 44667888899999999999999999898876544333333332210 111
Q ss_pred HHHHHHHHHh-cCcEEEEecee--CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 216 NKAVYDRIIA-RKVIYIVKGSF--QDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 216 n~~L~~~L~~-~G~~~vs~t~l--~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
..++.++|.+ .|..+...... .+..++|++++. ++++++.+++.|+++.+++
T Consensus 351 ~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~---~~~~i~~~~~~l~~~~~~~ 405 (407)
T 3nra_A 351 PAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQ---DHEAAVAAARRIVTLVERY 405 (407)
T ss_dssp HHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCS---CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCC---CHHHHHHHHHHHHHHHHHh
Confidence 2467777765 48755443322 246789998874 7999999999999887664
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=8e-07 Score=95.63 Aligned_cols=222 Identities=12% Similarity=0.045 Sum_probs=135.3
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCc
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPL 94 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wl 94 (764)
.|+++.+++...|+.. +.+|+++++.+|+++|+++|+++ +-+++.+-+ +|.+.|++++.+ ++++
T Consensus 83 ~~~~~~~~~~~~g~~~---~~~~~~~~~~~d~~~l~~~i~~~-----~~~v~~~~~---tG~~~~l~~i~~l~~~~~~~l 151 (375)
T 2fnu_A 83 SFVATANMLLESGYTP---VFAGIKNDGNIDELALEKLINER-----TKAIVSVDY---AGKSVEVESVQKLCKKHSLSF 151 (375)
T ss_dssp SCTHHHHHHHHTTCEE---EECCBCTTSSBCGGGSGGGCCTT-----EEEEEEECG---GGCCCCHHHHHHHHHHHTCEE
T ss_pred ccHhHHHHHHHCCCEE---EEeccCCCCCCCHHHHHhhcCcC-----ceEEEEeCC---cCCccCHHHHHHHHHHcCCEE
Confidence 6888999999999876 99999988899999999988642 223333323 899999999876 8999
Q ss_pred eeccccccc-------c---ceeeeecCC--Cccccc---cccc--cc-------cCCcc------------cCCCC-cc
Q psy13453 95 KVGGVLRRV-------Y---SSCLVPRGQ--KSLRTT---VLFH--FL-------FQHWQ------------IPLGR-RF 137 (764)
Q Consensus 95 HVDa~l~~~-------y---~s~ll~rd~--~~l~~~---~s~~--~d-------~~d~t------------le~SR-r~ 137 (764)
++|++.... + +-+.+..-. +.+... +-.. .+ +...+ ..+.+ +.
T Consensus 152 i~D~a~~~~~~~~~~~~~~~~~i~~~s~s~~K~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (375)
T 2fnu_A 152 LSDSSHALGSEYQNKKVGGFALASVFSFHAIKPITTAEGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRL 231 (375)
T ss_dssp EEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCC
T ss_pred EEECccccCCeECCeeccccCCeEEEeCCCCCCccccCceEEEeCCHHHHHHHHHHHhcCCccccccccccccccccCCC
Confidence 999963110 0 001111000 111100 0000 00 00000 01111 33
Q ss_pred cHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC-----CceeEEEEeeccccccccccccCccCCc
Q psy13453 138 RALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPP-----SMGLVCFRLKVRFWDKLDNLFGTISFGD 212 (764)
Q Consensus 138 ~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P-----~l~iV~Fry~P~~~~~~~~~~~~~~~~~ 212 (764)
..+...+.+ ...+++.+++++..++++++.+.|++.|++++..++ ...++.+++.+. ..
T Consensus 232 ~~~~~a~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~ 295 (375)
T 2fnu_A 232 NEIQSALGL--SQLKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQK--------------FF 295 (375)
T ss_dssp CHHHHHHHH--HHHTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGG--------------GG
T ss_pred CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCcc--------------cc
Confidence 344333333 345788899999999999999999999999987642 123344544311 00
Q ss_pred cHHHHHHHHHHHhcCcEEEEec-eeC--------------------CeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 213 NDLNKAVYDRIIARKVIYIVKG-SFQ--------------------DRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 213 d~~n~~L~~~L~~~G~~~vs~t-~l~--------------------g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
. -..++.++|.+.|....... ... ...++|++ .++.+++++++.+++.|+++.+++
T Consensus 296 ~-~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~-~~~~~t~~~i~~~~~~l~~~~~~~ 372 (375)
T 2fnu_A 296 T-CKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLP-CHANLNLESVQNIAHSVLKTFESF 372 (375)
T ss_dssp G-GHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEEC-CCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred c-hHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEec-CCCCCCHHHHHHHHHHHHHHHHHh
Confidence 0 12468888888886433110 000 12579996 556778999999999999887654
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=4.8e-07 Score=98.58 Aligned_cols=218 Identities=10% Similarity=0.014 Sum_probs=138.1
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCC-CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCC
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLP-DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGP 93 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd-~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~w 93 (764)
.|.++..++..+|... +.||++ +++.+|+++|+++|+++ +-+|. .+.++|.+.|++++++ +++
T Consensus 105 ~~~~~~~~~~~~g~~~---~~~~~~~~~~~~d~~~l~~~~~~~------~~~v~--~~n~tG~~~~~~~i~~l~~~~~~~ 173 (391)
T 3dr4_A 105 TYIASANSVTYCGATP---VLVDNDPRTFNLDAAKLEALITPR------TKAIM--PVHLYGQICDMDPILEVARRHNLL 173 (391)
T ss_dssp SCTHHHHHHHHTTCEE---EEECBCTTTCSBCGGGSGGGCCTT------EEEEC--CBCGGGCCCCHHHHHHHHHHTTCE
T ss_pred chHHHHHHHHHCCCEE---EEEecCccccCcCHHHHHHhcCCC------ceEEE--EECCCCChhhHHHHHHHHHHcCCE
Confidence 6788999999999877 999998 67899999999988642 22321 3568999999999886 899
Q ss_pred ceeccccc--ccc--------------------------ceeeeecCCCccccccccccccC------CcccCCCCcccH
Q psy13453 94 LKVGGVLR--RVY--------------------------SSCLVPRGQKSLRTTVLFHFLFQ------HWQIPLGRRFRA 139 (764)
Q Consensus 94 lHVDa~l~--~~y--------------------------~s~ll~rd~~~l~~~~s~~~d~~------d~tle~SRr~~A 139 (764)
+++|++.. ..+ +++++.+++..... +......+ .+....+.....
T Consensus 174 li~D~a~~~g~~~~~~~~~~~~di~~~S~s~~K~l~~g~gg~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~g~~~~~ 252 (391)
T 3dr4_A 174 VIEDAAEAVGATYRGKKSGSLGDCATFSFFGNAIITTGEGGMITTNDDDLAAK-MRLLRGQGMDPNRRYWFPIVGFNYRM 252 (391)
T ss_dssp EEEECTTCTTCEETTEETTSSSSEEEEECBTTSSSCCBSCEEEEESCHHHHHH-HHHHHBTTCCTTSTTCCSSCCCBCBC
T ss_pred EEEECcccccceECCeeecccCCEEEEECCCCCcCCcCCeEEEEECCHHHHHH-HHHHHhcCCCCCCcccccccccccCC
Confidence 99999531 111 01121111110000 00000000 011111223344
Q ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCC--CC-----ceeEEEEeeccccccccccccCccCCc
Q psy13453 140 LKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCP--PS-----MGLVCFRLKVRFWDKLDNLFGTISFGD 212 (764)
Q Consensus 140 LklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~--P~-----l~iV~Fry~P~~~~~~~~~~~~~~~~~ 212 (764)
..+.+++.....+++.+++++..++++++.+.+++. ++++... +. ..++.++.... .+.
T Consensus 253 ~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~i~~~~~-------------~~~ 318 (391)
T 3dr4_A 253 TNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARL-GNRVTKPHVALTGRHVFWMYTVRLGEG-------------LST 318 (391)
T ss_dssp CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGGG-TTSEECCCCCTTSCCCCSSEEEEECSS-------------CSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CccccCcCCCCCCcceeEEEEEEECCc-------------cch
Confidence 456666666667889999999999999999999998 8888765 22 22345544210 011
Q ss_pred cHHHHHHHHHHHhcCcEEEEec-eeC-------------------CeeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 213 NDLNKAVYDRIIARKVIYIVKG-SFQ-------------------DRLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 213 d~~n~~L~~~L~~~G~~~vs~t-~l~-------------------g~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
+ ..++.++|.++|....... .++ ....+|+ .+++.+++++++.+++.|+++
T Consensus 319 ~--~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl-~~~~~~t~edi~~~~~~l~~~ 389 (391)
T 3dr4_A 319 T--RDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNL-PTHAGLTEADIDRVIAALDQV 389 (391)
T ss_dssp C--HHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEE-CCCTTCCHHHHHHHHHHHHTT
T ss_pred h--HHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEc-cCCCCCCHHHHHHHHHHHHHH
Confidence 1 2578888999997543221 000 1357898 578888999999999988764
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.36 E-value=5.5e-06 Score=92.31 Aligned_cols=169 Identities=17% Similarity=0.134 Sum_probs=109.4
Q ss_pred cCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcE--EEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCce
Q psy13453 555 LSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGG--IIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKL 632 (764)
Q Consensus 555 ~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~G--vfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~ 632 (764)
...-...++|..+++...++||.+.. .+| +=.-+||.||+.+..+..+. . .
T Consensus 93 gGce~vD~iE~la~~rak~lF~a~~A--------~w~VNVQP~SGs~AN~avy~All~P---G----------------D 145 (490)
T 3ou5_A 93 GGAEVVDEIELLCQRRALEAFDLDPA--------QWGVNVQPYSGSPANLAVYTALLQP---H----------------D 145 (490)
T ss_dssp ---CHHHHHHHHHHHHHHHHTTCCTT--------TEEEECCCSSHHHHHHHHHHHHCC----C----------------C
T ss_pred CCChHHHHHHHHHHHHHHHHhCCCcc--------ccCCCCCcCCHHHHHHHHHHHHcCC---C----------------C
Confidence 34456789999999999999998753 233 23358999998776644221 1 1
Q ss_pred EEE---ecCCcchhHH-----HHHHhCCC--ceEEEecC-CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc
Q psy13453 633 VAY---TSDQSNSSVE-----KSAIIGDV--PVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD 701 (764)
Q Consensus 633 vi~---~S~~aH~Sv~-----kAa~~lGl--~v~~Vp~d-~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD 701 (764)
.|+ .+.-.|.|-- +.....|. +...-++| +++.||.+++++...+. +|-+|+ +|.+.+--.-
T Consensus 146 ~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~-----kPklIi--~G~SaY~r~i 218 (490)
T 3ou5_A 146 RIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLF-----RPRLII--AGTSAYARLI 218 (490)
T ss_dssp CEECBC----------------------------CBCEETTTTEECHHHHHHHHHHH-----CCSEEE--ECCSSCCSCC
T ss_pred EEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHhhc-----CCCeEE--ECCccCcccc
Confidence 122 2344454433 22233444 33444456 67999999999998876 376665 4666666777
Q ss_pred cHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCc
Q psy13453 702 NLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDC 760 (764)
Q Consensus 702 pl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~ 760 (764)
|++++++||++.|.+|.+|.||-.+++....+..- ++.||.+|.+.||.|..|.|.
T Consensus 219 d~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP---~~~ADvVTtTTHKTLrGPrGG 274 (490)
T 3ou5_A 219 DYARMREVCDEVKAHLLADMAHISGLVAAKVIPSP---FKHADIVTTTTHKTLRGARSG 274 (490)
T ss_dssp CHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCG---GGTCSEEEEESSSTTCSCSCE
T ss_pred CHHHHHHHHhhcccEEEechhhhhhhhcccccCCc---cccceEEeccccccccCCCce
Confidence 89999999999999999999998877665444433 456899999999999999873
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=3.1e-06 Score=92.40 Aligned_cols=221 Identities=10% Similarity=-0.039 Sum_probs=140.9
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCc
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPL 94 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wl 94 (764)
.|.|+..+++..|... +.||++ |+++|++.|++... .++-+++-+.++.++|.+.|++++++ ++++
T Consensus 141 ~~~~~~~~~~~~g~~~---~~v~~~-----d~~~le~~l~~~~~-~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~l 211 (401)
T 2bwn_A 141 NHASMIEGIKRNAGPK---RIFRHN-----DVAHLRELIAADDP-AAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALT 211 (401)
T ss_dssp CCHHHHHHHHHSCCCE---EEECTT-----CHHHHHHHHHHSCT-TSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEE
T ss_pred hhHHHHHHHHHcCCeE---EEEcCC-----CHHHHHHHHHhhcc-CCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEE
Confidence 6889999999999866 888886 89999999985321 12224467889999999999999886 8999
Q ss_pred eeccccccc-c---c-eeeeecC----CCccccccc------ccc-----cc-------C-CcccCCCC-cccHHHHHHH
Q psy13453 95 KVGGVLRRV-Y---S-SCLVPRG----QKSLRTTVL------FHF-----LF-------Q-HWQIPLGR-RFRALKLWMT 145 (764)
Q Consensus 95 HVDa~l~~~-y---~-s~ll~rd----~~~l~~~~s------~~~-----d~-------~-d~tle~SR-r~~ALklWat 145 (764)
++|++.... | + +++...+ ......+++ ..+ ++ . .+....+- ......+.++
T Consensus 212 i~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~a 291 (401)
T 2bwn_A 212 YIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQAS 291 (401)
T ss_dssp EEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCCEEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHH
T ss_pred EEeccccccccCCCCceeeeccCccccCcEEEeechhhccCCCCEEecCHHHHHHHHHhCcCceecCCCCHHHHHHHHHH
Confidence 999975421 1 1 1110000 000000000 000 00 0 01111111 2233455778
Q ss_pred HHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHH-
Q psy13453 146 LRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRII- 224 (764)
Q Consensus 146 L~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~- 224 (764)
+..+...|+.++.++..++++++.+.|++. +++++. |..+++.|++.. ..-..++.++|.
T Consensus 292 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~-----------------~~~~~~~~~~L~~ 352 (401)
T 2bwn_A 292 IAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-GMPIID-HGSHIVPVVIGD-----------------PVHTKAVSDMLLS 352 (401)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCC-CSSSCEEEECCC-----------------HHHHHHHHHHHHH
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHC-CCcccC-CCCCeEEEEeCC-----------------hHHHHHHHHHHHh
Confidence 888877788999999999999999999987 887764 556777776521 111356888886
Q ss_pred hcCcEEEEece--e-CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 225 ARKVIYIVKGS--F-QDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 225 ~~G~~~vs~t~--l-~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
+.|..+..... . ++..++|+++. ..+++++++.+++.|+++.++
T Consensus 353 ~~gi~v~~~~~~~~~~~~~~iRis~~-~~~t~~~i~~~~~~l~~~~~~ 399 (401)
T 2bwn_A 353 DYGVYVQPINFPTVPRGTERLRFTPS-PVHDLKQIDGLVHAMDLLWAR 399 (401)
T ss_dssp HHCEECCEECTTTSCTTCCEEEECCC-TTSCHHHHHHHHHHHHHHC--
T ss_pred cCCEEEeecCCCCCCCCCceEEEEee-CCCCHHHHHHHHHHHHHHHHh
Confidence 67875432221 1 13468999766 345899999999999887543
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.7e-06 Score=92.87 Aligned_cols=229 Identities=13% Similarity=0.101 Sum_probs=136.8
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCc-EE-EEeeCCcccccccCch---hhhc----
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCP-MC-SGYCGRTLHQDIQSLN---APVS---- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p-~~-VatAGTT~~G~iDpi~---~ia~---- 90 (764)
.|+++.++++..|... +.||+++++ +|+++|+++|++....+..+ ++ +-..++.++|.+-|++ ++++
T Consensus 131 ~~~~~~~~~~~~g~~~---~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~ 206 (407)
T 2zc0_A 131 SYINTLLAFEQLGAKI---EGVPVDNDG-MRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASK 206 (407)
T ss_dssp CCHHHHHHHHTTTCEE---EEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHcCCEE---EEcccCCCC-CCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHH
Confidence 4678889999999866 889998765 99999999998543232223 44 4566889999998887 5544
Q ss_pred -CCCceeccccccc-cc-----e----------eeeecCCCcccccccccc-----c----cCCcccCCCCcccHHHHHH
Q psy13453 91 -NGPLKVGGVLRRV-YS-----S----------CLVPRGQKSLRTTVLFHF-----L----FQHWQIPLGRRFRALKLWM 144 (764)
Q Consensus 91 -~~wlHVDa~l~~~-y~-----s----------~ll~rd~~~l~~~~s~~~-----d----~~d~tle~SRr~~ALklWa 144 (764)
++++++|.+.... +. + +++..-.+.+..-+...+ + +.......+.+...+..++
T Consensus 207 ~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (407)
T 2zc0_A 207 YDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLGTGFRIGWIIAEGEILKKVLMQKQPIDFCAPAISQYI 286 (407)
T ss_dssp HTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTCTTSCCEEEECCHHHHHHHHHHHTTTTSSSCHHHHHH
T ss_pred cCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccCCCcceEEEecCHHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 8999999964211 10 0 011110111110000000 0 0000001111223443433
Q ss_pred HHHHc--c--H-HHHHHHHHHHHHHHHHHHHHHhc-CCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHH
Q psy13453 145 TLRSY--G--L-KGLQAYLRKHISLAKKFADLVEQ-DDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKA 218 (764)
Q Consensus 145 tL~~l--G--~-eGy~~~i~~~i~lA~~l~~~I~~-~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~ 218 (764)
+...+ + . +.+.++.++..+.++++.+.|++ .|+++++.+.....+.|++.+ +.+ ..+
T Consensus 287 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~--~~~ 349 (407)
T 2zc0_A 287 ALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPIAGMFVMFFLPE---------------GAD--GIS 349 (407)
T ss_dssp HHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCCCSBSSEEEEECST---------------TCC--HHH
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEecCCCcEEEEEEcCC---------------CCC--HHH
Confidence 33332 3 2 44666777777888999999987 578876554444456665421 111 246
Q ss_pred HHHHHHhc-CcEEEEecee----CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy13453 219 VYDRIIAR-KVIYIVKGSF----QDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVL 271 (764)
Q Consensus 219 L~~~L~~~-G~~~vs~t~l----~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~ 271 (764)
+.++|.++ |..+...... .+..++|+++..+ ++++++.+++.|+++.+++.
T Consensus 350 l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~--~~~~i~~~~~~l~~~l~~~~ 405 (407)
T 2zc0_A 350 FANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRP--SKEEIPIGIKKLAKLYKEKF 405 (407)
T ss_dssp HHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSS--CTTHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCC--CHHHHHHHHHHHHHHHHHHh
Confidence 88888888 8754433222 1357899988766 68999999999999877653
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.33 E-value=3.2e-07 Score=98.95 Aligned_cols=219 Identities=9% Similarity=0.033 Sum_probs=137.1
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCc
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPL 94 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wl 94 (764)
.|.++..++...|+.. +.+|+++++.+|+++|+++|++. +-+|- ++.++|.+.|++++++ ++++
T Consensus 87 ~~~~~~~~~~~~g~~~---~~~~~~~~~~~d~~~l~~~~~~~------~~~v~--~~n~~G~~~~~~~i~~~~~~~~~~l 155 (374)
T 3uwc_A 87 TFIASVGAIVQAGATP---VLVDSENGYVIDPEKIEAAITDK------TKAIM--PVHYTGNIADMPALAKIAKKHNLHI 155 (374)
T ss_dssp SCHHHHHHHHHTTCEE---EEECBCTTSSBCGGGTGGGCCTT------EEEEC--CBCGGGCCCCHHHHHHHHHHTTCEE
T ss_pred ccHHHHHHHHHcCCEE---EEEecCCCCCcCHHHHHHhCCCC------ceEEE--EeCCcCCcCCHHHHHHHHHHcCCEE
Confidence 5788999999999877 99999988999999999988652 22322 7779999999999886 8999
Q ss_pred eecccccc--cc--------ceeeeec--CCCcccc----cccc--ccc-------cC------Ccc-cCCCCcccHHHH
Q psy13453 95 KVGGVLRR--VY--------SSCLVPR--GQKSLRT----TVLF--HFL-------FQ------HWQ-IPLGRRFRALKL 142 (764)
Q Consensus 95 HVDa~l~~--~y--------~s~ll~r--d~~~l~~----~~s~--~~d-------~~------d~t-le~SRr~~ALkl 142 (764)
++|++... .+ +-++.+. ..+.+.. .+-. ..+ +. .+. ...+.......+
T Consensus 156 i~D~~~~~g~~~~~~~~~~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (374)
T 3uwc_A 156 VEDACQTILGRINDKFVGSWGQFACFSLHPLKNLNVWSDAGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTI 235 (374)
T ss_dssp EEECTTCTTCEETTEETTSSSSEEEEECSSSSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHH
T ss_pred EEeCCCccCceeCCeeccccccEEEEeCCCCCcCCccceeEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCCCHH
Confidence 99995321 11 1111111 0011111 0000 000 00 010 011112222344
Q ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCC-eEEeCCCCceeE---EEEeeccccccccccccCccCCccHHHHH
Q psy13453 143 WMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDR-FELVCPPSMGLV---CFRLKVRFWDKLDNLFGTISFGDNDLNKA 218 (764)
Q Consensus 143 WatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~-~ell~~P~l~iV---~Fry~P~~~~~~~~~~~~~~~~~d~~n~~ 218 (764)
.+++.....+++.++.++..++++++.+.+++.++ +++...++-... .|.... . + ..+
T Consensus 236 ~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~-~--~~~ 297 (374)
T 3uwc_A 236 QAVIANRLMNQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRV---------------K-Y--RDQ 297 (374)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEE---------------T-T--HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEc---------------C-C--HHH
Confidence 55555555677888999999999999999999988 888655543222 222110 0 1 246
Q ss_pred HHHHHHhcCcEEEEec--eeC---------------------CeeEEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13453 219 VYDRIIARKVIYIVKG--SFQ---------------------DRLFMRFAICSSQTEESDVQLGWNEIRTATE 268 (764)
Q Consensus 219 L~~~L~~~G~~~vs~t--~l~---------------------g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~ 268 (764)
+.++|.++|....... ..+ ....+|+ .+++.+++++++.+++.|+++.+
T Consensus 298 l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl-~~~~~~t~edi~~~~~~l~~~l~ 369 (374)
T 3uwc_A 298 LFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITL-PAHPYLTEEEINYIIKKVREFYL 369 (374)
T ss_dssp HHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEE-CCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEc-cCCCCCCHHHHHHHHHHHHHHHH
Confidence 7888888887432211 000 1267898 47778899999999999988764
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=98.29 E-value=2e-06 Score=94.11 Aligned_cols=211 Identities=12% Similarity=0.052 Sum_probs=129.3
Q ss_pred HHHhhcCCCCCCeEEecCCCCCc--ccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccc-cCchhhhcCCCceecccc--
Q psy13453 26 KATHSLSGTPDQVRLSGLPDSEW--LAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDI-QSLNAPVSNGPLKVGGVL-- 100 (764)
Q Consensus 26 KAa~~LGl~~~~v~~Vpvd~~~r--mD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~i-Dpi~~ia~~~wlHVDa~l-- 100 (764)
+.|.-.|+.. ..||++.++. .+++. + |+++ +-++..+--.|.+|++ |+|.+ .++++||||.-
T Consensus 109 ~~a~~~G~~v---~~~~~~~~g~~~~~~~~-~--l~~~-----t~lv~~~~~e~~tG~~~~~i~~--~~~~~~vD~~q~~ 175 (361)
T 3m5u_A 109 KEAQILGVNV---KTVASSEESNFDHIPRV-E--FSDN-----ADYAYICSNNTIYGTQYQNYPK--TKTPLIVDASSDF 175 (361)
T ss_dssp HHHHHTTCCE---EEEEECTTTTSCSCCCC-C--CCTT-----SSEEEEESEETTTTEECSSCCC--CSSCEEEECGGGT
T ss_pred HHHHHcCCce---EEEecccCcCCCcCChh-h--cCCC-----CCEEEEeCCCCCcceeCCcccc--cCCEEEEEccccc
Confidence 3445557655 9999998774 57766 3 5442 2244456777889997 65543 28899999931
Q ss_pred ----------------ccc----cc-eeeeecCCCccccccc-cccccCCccc---CCCCc-----ccHHHHHHHHHHcc
Q psy13453 101 ----------------RRV----YS-SCLVPRGQKSLRTTVL-FHFLFQHWQI---PLGRR-----FRALKLWMTLRSYG 150 (764)
Q Consensus 101 ----------------~~~----y~-s~ll~rd~~~l~~~~s-~~~d~~d~tl---e~SRr-----~~ALklWatL~~lG 150 (764)
.|+ .+ ++++.|++ .+...-. ..+.+.+|.. ..+|. ...+.+-++++++=
T Consensus 176 g~~~id~~~~d~~~~s~~K~~gp~G~g~l~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~ 254 (361)
T 3m5u_A 176 FSRKVDFSNIALFYGGVQKNAGISGLSCIFIRKD-MLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLL 254 (361)
T ss_dssp TSSCCCCTTEEEEEEETTTTSSCTTCEEEEEEHH-HHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCcccCCEEEEechhccCCCccEEEEEcHH-HHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHH
Confidence 111 22 34444432 1110000 0011222211 12221 12335667777776
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHhcCCCe-EEeCCCC---ceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHh
Q psy13453 151 LK-GLQAYLRKHISLAKKFADLVEQDDRF-ELVCPPS---MGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIA 225 (764)
Q Consensus 151 ~e-Gy~~~i~~~i~lA~~l~~~I~~~p~~-ell~~P~---l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~ 225 (764)
.+ |+.++.++..++++++.+.|++.+++ ++..+++ ..+++|++. +...++..+.+.|.+
T Consensus 255 ~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~----------------~~~~~~~~~~~~L~~ 318 (361)
T 3m5u_A 255 NQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADKKDRSLMNVSFNIA----------------KNKDLEPLFVKEAEE 318 (361)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSCGGGBCSSEEEEEES----------------SCTTHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCCHHHcCCeEEEEECC----------------CchhhhHHHHHHHHH
Confidence 66 79999999999999999999999876 6665543 358999864 101133467788888
Q ss_pred cCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 226 RKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 226 ~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
.|.... ...+....+|+++.+ .++++||+.+++.|+++.++
T Consensus 319 ~gI~~~--~g~~~~g~iRiS~~~-~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 319 AGMIGL--KGHRILGGIRASIYN-ALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp TTEECC--BCCTTTCSEEEECCT-TSCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEe--cCCCccCeEEEEccC-CCCHHHHHHHHHHHHHHHHh
Confidence 887532 222222359998655 56899999999999988754
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=3.4e-06 Score=97.28 Aligned_cols=184 Identities=9% Similarity=-0.004 Sum_probs=115.3
Q ss_pred cccCCchH-HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCc
Q psy13453 553 SWLSSPAC-TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631 (764)
Q Consensus 553 ~~~~sp~~-t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~ 631 (764)
.|...... ...|..+..|+.+-.+..... ......++|+|+++++..++.+...+.+- .++
T Consensus 133 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~----~~~~~I~~t~G~~eal~~~~~~l~~~~l~--------------~~G 194 (546)
T 2zy4_A 133 NYPVPPRMLNISEKIVRQYIIREMGADAIP----SESVNLFAVEGGTAAMAYIFESLKLNGLL--------------KAG 194 (546)
T ss_dssp SCCSSSSCCHHHHHHHHHHHHHHTTCTTSC----GGGEEEEEEEHHHHHHHHHHHHHHHTTSS--------------CTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHHhccCCCCC----CCcceEEEECCHHHHHHHHHHHhhhhhcC--------------CCC
Confidence 34443333 344555666777765431000 00135789999999987776542211110 112
Q ss_pred eEEEecCCcchhHHHHHHhC--CCceEEEecCC--CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc---HH
Q psy13453 632 LVAYTSDQSNSSVEKSAIIG--DVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN---LE 704 (764)
Q Consensus 632 ~vi~~S~~aH~Sv~kAa~~l--Gl~v~~Vp~d~--~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp---l~ 704 (764)
..|++.+-+|.....++.+. |+.++.+|+++ ++.+|+++|++.+.. .+-+|+.+..++.+|.+-+ ++
T Consensus 195 d~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~k~v~l~~p~NPtG~~~~~~~l~ 268 (546)
T 2zy4_A 195 DKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKDP------AIKIFFCVNPSNPPSVKMDQRSLE 268 (546)
T ss_dssp CEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGST------TEEEEEEESSCSSSCBCCCHHHHH
T ss_pred CEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCC------CCeEEEEECCCCCCCccCCHHHHH
Confidence 35677778888888877664 56788888874 357999999887532 2446666788999999854 66
Q ss_pred HHHHHH--HhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 705 ELGPIC--QEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 705 eIa~i~--~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
+|+++| +++|+++++|.+|+.+..-.+...... ...+-+..+++|+++.| +-+|.+
T Consensus 269 ~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~---~~~~i~~~S~SK~~g~~GlRiG~~ 327 (546)
T 2zy4_A 269 RVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAIC---PENTLLVYSFSKYFGATGWRLGVV 327 (546)
T ss_dssp HHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHC---GGGEEEEEESTTTTTCGGGCEEEE
T ss_pred HHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhC---CCCEEEEEeCccccCCCCcceEEE
Confidence 788888 789999999999997542111111111 12356788999998755 224543
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=2.1e-06 Score=91.85 Aligned_cols=213 Identities=12% Similarity=0.042 Sum_probs=129.9
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCC-CCcccHHHHHH-HHHHHhhCCCCcEEEEeeCCcccccc-cCchhhhcCCCcee
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPD-SEWLAYLTLRT-IYESFRKSFLCPMCSGYCGRTLHQDI-QSLNAPVSNGPLKV 96 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~-~~rmD~~aLe~-~I~~~~~~G~~p~~VatAGTT~~G~i-Dpi~~ia~~~wlHV 96 (764)
.||+. ..+..+| .. +.||+++ ++.+|+++|++ +|++. +-+++-+.+++++|.+ |+|.+ ..++++++
T Consensus 103 ~~~~~-~~~~~~g-~~---~~v~~~~~~~~~d~~~l~~~~i~~~-----~k~v~~~~~~nptG~~~~~i~~-~~~~~li~ 171 (360)
T 1w23_A 103 SEKAL-KEAKLLG-ET---HIAASTKANSYQSIPDFSEFQLNEN-----DAYLHITSNNTIYGTQYQNFPE-INHAPLIA 171 (360)
T ss_dssp HHHHH-HHHHTTS-EE---EEEEECGGGTSCSCCCGGGCCCCTT-----EEEEEEESEETTTTEECSSCCC-CCSSCEEE
T ss_pred hHHHH-HHHHHhC-Ce---EEeecccccCcCCccchHhhccCCC-----CCEEEEeCCCCCcceecccccc-cCCceEEE
Confidence 34553 4456667 54 9999985 77899999998 77432 2244566789999998 65655 33899999
Q ss_pred ccccccc--------c--------------c-eeeeecCCCccccccccccccCCccc-------C----CCC-cccHHH
Q psy13453 97 GGVLRRV--------Y--------------S-SCLVPRGQKSLRTTVLFHFLFQHWQI-------P----LGR-RFRALK 141 (764)
Q Consensus 97 Da~l~~~--------y--------------~-s~ll~rd~~~l~~~~s~~~d~~d~tl-------e----~SR-r~~ALk 141 (764)
|++.... + + ++++.++. .... +. ....+.+ . ++- ......
T Consensus 172 D~a~~~~~~~~~~~~~di~~~s~sK~~~~~G~G~~~~~~~-~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (360)
T 1w23_A 172 DMSSDILSRPLKVNQFGMIYAGAQKNLGPSGVTVVIVKKD-LLNT-KV---EQVPTMLQYATHIKSDSLYNTPPTFSIYM 246 (360)
T ss_dssp ECTTTTTSSCCCGGGCSEEEEETTTTTSCTTCEEEEEEHH-HHCS-CC---TTCCGGGCHHHHHHTTTCSSCCCHHHHHH
T ss_pred echhhcCCCCcCcccCCEEEEEcccccCCCCcEEEEEcHH-HHhh-cc---cCCcchhhhhhhhhccCCCCCCCHHHHHH
Confidence 9963110 0 0 12222111 0000 00 0000111 0 111 112234
Q ss_pred HHHHHHHccHH-HHHHHHHHHHHHHHHHHHHHhcCCCe-EEeCCC--Cce-eEEEEeeccccccccccccCccCCccHHH
Q psy13453 142 LWMTLRSYGLK-GLQAYLRKHISLAKKFADLVEQDDRF-ELVCPP--SMG-LVCFRLKVRFWDKLDNLFGTISFGDNDLN 216 (764)
Q Consensus 142 lWatL~~lG~e-Gy~~~i~~~i~lA~~l~~~I~~~p~~-ell~~P--~l~-iV~Fry~P~~~~~~~~~~~~~~~~~d~~n 216 (764)
+.+++..+..+ ++.++.++..++++++.+.|++.+++ ....+| ..+ ++.|++.. ....
T Consensus 247 ~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~ 309 (360)
T 1w23_A 247 LRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRN-----------------EELN 309 (360)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSS-----------------HHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCCchhccCcEEEEEcCC-----------------CccH
Confidence 56667766555 78999999999999999999998765 654334 234 77776521 0112
Q ss_pred HHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13453 217 KAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATE 268 (764)
Q Consensus 217 ~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~ 268 (764)
.++.++|.+.|....... ....++|+++.. .+++++++.+++.|+++.+
T Consensus 310 ~~~~~~l~~~gi~~~~~~--~~~~~iRis~~~-~~~~~~i~~~~~~l~~~~~ 358 (360)
T 1w23_A 310 QQFLAKAKEQGFVGLNGH--RSVGGCRASIYN-AVPIDACIALRELMIQFKE 358 (360)
T ss_dssp HHHHHHHHHTTEESCBCC--TTTCSEEEECCT-TSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCeeeecCC--CCCCeEEEEecC-CCCHHHHHHHHHHHHHHHh
Confidence 467788888887542221 124579998764 4578999999999988754
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=5.4e-06 Score=90.29 Aligned_cols=214 Identities=8% Similarity=0.013 Sum_probs=134.9
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCC-CcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCC
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDS-EWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGP 93 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~-~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~w 93 (764)
.|.|+..+++..|... +.+|++++ +.+|+++|+++|++. +-+++.+ .++|..+|++++++ +++
T Consensus 89 ~~~~~~~~~~~~g~~~---~~~~~~~~~~~~d~~~l~~~i~~~-----~~~v~~~---~~~g~~~~~~~i~~l~~~~~~~ 157 (390)
T 3b8x_A 89 SWSTTYYPLQQYGLRV---KFVDIDINTLNIDIESLKEAVTDS-----TKAILTV---NLLGNPNNFDEINKIIGGRDII 157 (390)
T ss_dssp SCHHHHHHHHHTTCEE---EEECBCTTTCSBCHHHHHHHCCTT-----EEEEEEE---CGGGCCCCHHHHHHHHTTSCCE
T ss_pred CcHHHHHHHHHcCCEE---EEEecCccccCcCHHHHHHHhCcC-----CeEEEEE---CCccChhhHHHHHHHHHHcCCE
Confidence 6889999999999876 99999865 999999999999652 1233332 25788899999876 889
Q ss_pred ceeccccc------------------------ccc----ceeeeecCCCccccccccccccC------------------
Q psy13453 94 LKVGGVLR------------------------RVY----SSCLVPRGQKSLRTTVLFHFLFQ------------------ 127 (764)
Q Consensus 94 lHVDa~l~------------------------~~y----~s~ll~rd~~~l~~~~s~~~d~~------------------ 127 (764)
+|+|++.. +++ +++++.+++..... +....+.+
T Consensus 158 li~D~a~~~g~~~~~~~~g~~~~~~~~s~~~~k~~~~g~gG~~~~~~~~l~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~ 236 (390)
T 3b8x_A 158 LLEDNCESMGATFNNKCAGTFGLMGTFSSFYSNHIATMEGGCIVTDDEEIYHI-LLCIRAHGWTRNLPKKNKVTGVKSDD 236 (390)
T ss_dssp EEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHH-HHHHTBTTBSTTSCSEETTTEECCSC
T ss_pred EEEECcCcccCEECCcccccccceEEEEccCCCCCccCCceEEEeCCHHHHHH-HHHHHhcCCCcccccccccccccccc
Confidence 99998531 001 13333333211000 00000000
Q ss_pred ------CcccCCCC-cccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC-CceeEEE--Eeeccc
Q psy13453 128 ------HWQIPLGR-RFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPP-SMGLVCF--RLKVRF 197 (764)
Q Consensus 128 ------d~tle~SR-r~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P-~l~iV~F--ry~P~~ 197 (764)
.+...+.+ +...+..++.+..+ +.+.+.+++..++++++.+.|+++|++++..++ ..+.+.| ++.+.
T Consensus 237 ~~~~~~~~~~~g~~~~~~~~~aa~~l~~l--~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~- 313 (390)
T 3b8x_A 237 QFEESFKFVLPGYNVRPLEMSGAIGIEQL--KKLPRFISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIKKD- 313 (390)
T ss_dssp TTTSSSCBCSCCCBCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCSSEEECCCCSBCCCCEEEEEECTT-
T ss_pred ccccccceeccccccCcCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCCCCcccEEEEEEecCc-
Confidence 01111222 46678888887764 788999999999999999999999999987653 3333333 43210
Q ss_pred cccccccccCccCCccHHHHHHHHHHHhcCcEEEEe---------ceeCC----------------eeEEEEeccCCCCC
Q psy13453 198 WDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVK---------GSFQD----------------RLFMRFAICSSQTE 252 (764)
Q Consensus 198 ~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~---------t~l~g----------------~~~LRi~v~np~Tt 252 (764)
.+.+ ..++.+.|.+.|...-.. ..++. ...||+. +++.++
T Consensus 314 ------------~~~~--~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~-~~~~~t 378 (390)
T 3b8x_A 314 ------------SGVI--RKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVG-NHQIEL 378 (390)
T ss_dssp ------------SCCC--HHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEE-CCSSCC
T ss_pred ------------Cccc--HHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEee-CCCCCC
Confidence 0111 246788888888643220 00110 1368884 788899
Q ss_pred HHHHHHHHHHH
Q psy13453 253 ESDVQLGWNEI 263 (764)
Q Consensus 253 ~e~i~~~l~~l 263 (764)
+++++.+++.|
T Consensus 379 ~~di~~i~~~l 389 (390)
T 3b8x_A 379 FDEIDYLREVL 389 (390)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 99999998765
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=3.7e-06 Score=90.96 Aligned_cols=217 Identities=10% Similarity=0.052 Sum_probs=133.3
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCC----CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccc---cCchhhhc--
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLP----DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDI---QSLNAPVS-- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd----~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~i---Dpi~~ia~-- 90 (764)
.|.++..++..+|... +.+|++ .++++|+++|+++|++ . -+++-+.++.++|.+ +++.++++
T Consensus 123 ~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~d~~~l~~~l~~-~-----~~v~i~~p~nptG~~~~~~~l~~i~~~~ 193 (391)
T 4dq6_A 123 VYSPFNSVVKNNNREL---IISPLQKLENGNYIMDYEDIENKIKD-V-----KLFILCNPHNPVGRVWTKDELKKLGDIC 193 (391)
T ss_dssp CCTHHHHHHHHTTCEE---EECCCEECTTSCEECCHHHHHHHCTT-E-----EEEEEESSBTTTTBCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCeE---EeeeeeecCCCceEeeHHHHHHHhhc-C-----CEEEEECCCCCCCcCcCHHHHHHHHHHH
Confidence 5678888999999877 899987 3457999999999975 2 234556689999999 78888765
Q ss_pred ---CCCceeccccccc-cc-----e------------eeeecCCCccc-ccccccc------c----cC----CcccCCC
Q psy13453 91 ---NGPLKVGGVLRRV-YS-----S------------CLVPRGQKSLR-TTVLFHF------L----FQ----HWQIPLG 134 (764)
Q Consensus 91 ---~~wlHVDa~l~~~-y~-----s------------~ll~rd~~~l~-~~~s~~~------d----~~----d~tle~S 134 (764)
++++++|.+.... +. + +++..-.+.+- ..+...+ + +. .++..+.
T Consensus 194 ~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (391)
T 4dq6_A 194 LKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRIDIKRN 273 (391)
T ss_dssp HHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTCCCC
T ss_pred HHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHHHHhhcCCCC
Confidence 8999999964211 00 0 11111111110 0000000 0 00 0111111
Q ss_pred CcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEeCCCCceeEE-EEeeccccccccccccCccCCc
Q psy13453 135 RRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQ-DDRFELVCPPSMGLVC-FRLKVRFWDKLDNLFGTISFGD 212 (764)
Q Consensus 135 Rr~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~-~p~~ell~~P~l~iV~-Fry~P~~~~~~~~~~~~~~~~~ 212 (764)
-......+.+++.. +.+.+.++.++..+.++++.+.|++ .|+++++. |+-+.+. +++...+ .
T Consensus 274 ~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~--------------~ 337 (391)
T 4dq6_A 274 NCFSLVATEASYNN-GESWLESFLEYLESNIDFAIKYINENMPKLKVRK-PEGTYLLWVDFSALG--------------L 337 (391)
T ss_dssp CHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECC-CSBSSEEEEECGGGC--------------C
T ss_pred CHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecC-CCccEEEEEEhhhcC--------------C
Confidence 11122233344443 5566788888999999999999998 79999765 4444444 4442100 1
Q ss_pred cHHHHHHHHHHHhc-CcEEEEecee--CCeeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 213 NDLNKAVYDRIIAR-KVIYIVKGSF--QDRLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 213 d~~n~~L~~~L~~~-G~~~vs~t~l--~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
+ ..++.++|.++ |......... .+..++|+++. +++++++.+++.|+++
T Consensus 338 ~--~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~---~~~~~i~~~l~~l~~~ 389 (391)
T 4dq6_A 338 S--DEELESILVQKGKVALNQGNSFGIGGSGYQRINLA---CPRSMLEEALIRIKNA 389 (391)
T ss_dssp C--HHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECC---SCHHHHHHHHHHHHHH
T ss_pred C--HHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEc---CCHHHHHHHHHHHHHH
Confidence 1 24688888888 8755443333 23578999877 5789999999988775
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=4.6e-06 Score=91.38 Aligned_cols=218 Identities=12% Similarity=0.041 Sum_probs=136.6
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCC-CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCC
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPD-SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGP 93 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~-~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~w 93 (764)
.|.++.+++...|... +.||+++ ++.+|+++|+++|++. +-+|. .+.++|.+.|++++++ +++
T Consensus 112 ~~~~~~~~~~~~g~~~---~~~~~~~~~~~~d~~~l~~~i~~~------~~~v~--~~n~tG~~~~l~~i~~l~~~~~~~ 180 (399)
T 2oga_A 112 TYIASWLAVSATGATP---VPVEPHEDHPTLDPLLVEKAITPR------TRALL--PVHLYGHPADMDALRELADRHGLH 180 (399)
T ss_dssp SCTHHHHHHHHTTCEE---EEECBCSSSSSBCHHHHHHHCCTT------EEEEC--CBCGGGCCCCHHHHHHHHHHHTCE
T ss_pred ccHHHHHHHHHCCCEE---EEEecCCCCCCcCHHHHHHhcCCC------CeEEE--EeCCcCCccCHHHHHHHHHHcCCE
Confidence 5778889999999876 8999986 6899999999999742 22321 4678999999999886 899
Q ss_pred ceeccccccc--c--------ceeeeecC--CCcccc----ccccc--cc----------c------CCcccCCCCcccH
Q psy13453 94 LKVGGVLRRV--Y--------SSCLVPRG--QKSLRT----TVLFH--FL----------F------QHWQIPLGRRFRA 139 (764)
Q Consensus 94 lHVDa~l~~~--y--------~s~ll~rd--~~~l~~----~~s~~--~d----------~------~d~tle~SRr~~A 139 (764)
+++|++.... + +-++.+.- .+.+.. .+-.. .+ . ......++.+...
T Consensus 181 li~Dea~~~g~~~~~~~~~~~~di~~~S~~~sK~~~~~G~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~ 260 (399)
T 2oga_A 181 IVEDAAQAHGARYRGRRIGAGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDE 260 (399)
T ss_dssp ECEECTTCTTCEETTEETTCTTCEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCH
T ss_pred EEEECcccccCccCCeecccccCEEEEeCCCCccCCcCCceEEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCH
Confidence 9999954211 1 11111110 111111 00000 00 0 0001122235567
Q ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCcee---EEEEeeccccccccccccCccCCccHHH
Q psy13453 140 LKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGL---VCFRLKVRFWDKLDNLFGTISFGDNDLN 216 (764)
Q Consensus 140 LklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~i---V~Fry~P~~~~~~~~~~~~~~~~~d~~n 216 (764)
+..|+.+..+ +.+.++.++..++++++.+.|++.+++++...|+-.. +.|.... .+ .
T Consensus 261 ~~~a~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~----------------~~--~ 320 (399)
T 2oga_A 261 MQAAVLRIRL--AHLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRT----------------ER--R 320 (399)
T ss_dssp HHHHHHHHHH--HTHHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEECCCSSEEEEC----------------SS--H
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCcceeEEEEEEC----------------CC--H
Confidence 7777766543 4466778888899999999999999988766554322 1233210 01 2
Q ss_pred HHHHHHHHhcCcEEEEec--eeC--------C-------------eeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 217 KAVYDRIIARKVIYIVKG--SFQ--------D-------------RLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 217 ~~L~~~L~~~G~~~vs~t--~l~--------g-------------~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
.++.++|.++|....... ..+ + ..++|++ .++.+++++++.+++.|+++.++
T Consensus 321 ~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~-~~~~~t~edi~~~~~~l~~~~~~ 395 (399)
T 2oga_A 321 DELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLP-IGPHLERPQALRVIDAVREWAER 395 (399)
T ss_dssp HHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEEC-CSTTCCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEcc-CCCCCCHHHHHHHHHHHHHHHHH
Confidence 467888888887543211 100 0 2579995 66778999999999999987654
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.5e-05 Score=87.29 Aligned_cols=234 Identities=9% Similarity=0.017 Sum_probs=133.1
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCc
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPL 94 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wl 94 (764)
.|.++..++...|... +.+|+++++.+|+++|+++|++.. +++-+++.+- ++|..+|++++++ ++++
T Consensus 81 ~~~~~~~~~~~~g~~~---~~v~~~~~~~~d~~~l~~~i~~~~--~~~~~v~~~~---~~G~~~~l~~i~~l~~~~~~~l 152 (394)
T 1o69_A 81 TFIASVAPICYLKAKP---VFIDCDETYNIDVDLLKLAIKECE--KKPKALILTH---LYGNAAKMDEIVEICKENDIVL 152 (394)
T ss_dssp SCGGGTHHHHHTTCEE---EEECBCTTSSBCHHHHHHHHHHCS--SCCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEE
T ss_pred ccHHHHHHHHHcCCEE---EEEEeCCCCCcCHHHHHHHHhccc--CCceEEEEEC---CCCChhhHHHHHHHHHHcCCEE
Confidence 5778888999999876 999999889999999999998631 1222443322 7899999999886 8899
Q ss_pred eecccccc--cc--------------------------ceeeeecCCCccccccccccccC----C-c-ccCCCC--ccc
Q psy13453 95 KVGGVLRR--VY--------------------------SSCLVPRGQKSLRTTVLFHFLFQ----H-W-QIPLGR--RFR 138 (764)
Q Consensus 95 HVDa~l~~--~y--------------------------~s~ll~rd~~~l~~~~s~~~d~~----d-~-tle~SR--r~~ 138 (764)
++|++... .+ +++++.++++.... +.....+. . + ..+.+. +..
T Consensus 153 i~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~~~~~G~~~~~~~~l~~~-l~~~~~~~~~~~~~~~~~~~g~~~~~~ 231 (394)
T 1o69_A 153 IEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIITTSGGGMLIGKNKEKIEK-ARFYSTQARENCLHYEHLDYGYNYRLS 231 (394)
T ss_dssp EEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHH-HHHHTBTCCCSSSSCCCSSCCCBCBCC
T ss_pred EEECcCcccceeCCcccccccCcEEEEEeCCccCCCCCceEEEECCHHHHHH-HHHHHHhccccCccccccccCcccCcC
Confidence 99995421 01 01222222111000 00000000 0 0 001111 223
Q ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC-----CceeEEEEeecccc----ccccccccCcc
Q psy13453 139 ALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPP-----SMGLVCFRLKVRFW----DKLDNLFGTIS 209 (764)
Q Consensus 139 ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P-----~l~iV~Fry~P~~~----~~~~~~~~~~~ 209 (764)
.+...+.+.. .+-+.+.+++..++++++.+.|++. +++..++ .+.+++|++.+... .+.........
T Consensus 232 ~~~aa~~l~~--l~~l~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 307 (394)
T 1o69_A 232 NVLGAIGVAQ--MEVLEQRVLKKREIYEWYKEFLGEY--FSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKN 307 (394)
T ss_dssp HHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHTTT--EECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCC
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccc--ccccCCCCCCcceeEEEEEEecchhhccccccccccccccc
Confidence 3433343333 3457788999999999999999987 7766543 23367777642100 00000000000
Q ss_pred CCccHHHHHHHHHHHhcCcEEEEe-------ceeCC-------------eeEEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13453 210 FGDNDLNKAVYDRIIARKVIYIVK-------GSFQD-------------RLFMRFAICSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 210 ~~~d~~n~~L~~~L~~~G~~~vs~-------t~l~g-------------~~~LRi~v~np~Tt~e~i~~~l~~l~~~~ 267 (764)
+....-..++.+.|.+.|...... ..++. ...+|+. +++.+++++++.+++.|+++.
T Consensus 308 ~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~t~edi~~~~~~l~~~~ 384 (394)
T 1o69_A 308 ITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLP-SGTAMSKDDVYEISKLILKSI 384 (394)
T ss_dssp CCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEEC-CCTTCCHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEcc-CCCCCCHHHHHHHHHHHHHHH
Confidence 000111357888998888743222 01111 0345554 489999999999999998764
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=7.3e-06 Score=89.61 Aligned_cols=212 Identities=8% Similarity=-0.064 Sum_probs=128.3
Q ss_pred HHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc--CCCceecccccc
Q psy13453 25 FKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS--NGPLKVGGVLRR 102 (764)
Q Consensus 25 ~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~--~~wlHVDa~l~~ 102 (764)
.+.+..++++. .++.||++.....|. + +++ ++-+++.+.+++++|.+.|++++.+ ++|+|+|++...
T Consensus 135 ~~~~~~~~~g~-~~~~v~~~~g~~~~~-~----i~~-----~~~~v~~~~~~nptG~~~~~~~i~~~~~~~vivD~a~~~ 203 (398)
T 2fyf_A 135 ASAVSKNPFVG-EPIIITSDPGSAPEP-Q----TDP-----SVDVIAWAHNETSTGVAVAVRRPEGSDDALVVIDATSGA 203 (398)
T ss_dssp HHHHHHCTTSC-CCEEEECCTTCCCCC-C----CCT-----TCSEEEEESEETTTTEECCCCCCTTCC-CEEEEECTTTT
T ss_pred HHHHHHhCCCC-ceEEEecCCCCCCCc-c----ccC-----CCCEEEEeCcCCCcceecchHHhhhhcCCeEEEEecccc
Confidence 34566663332 248899984333332 1 221 2234456678999999999999987 899999995310
Q ss_pred ------------------c-c-----ceeeeecCCCcccccccc-----c--cccCC-----------cccCCCC-cccH
Q psy13453 103 ------------------V-Y-----SSCLVPRGQKSLRTTVLF-----H--FLFQH-----------WQIPLGR-RFRA 139 (764)
Q Consensus 103 ------------------~-y-----~s~ll~rd~~~l~~~~s~-----~--~d~~d-----------~tle~SR-r~~A 139 (764)
+ + .++++.++ +.+.. +.. . ..+.+ ++. ++- ....
T Consensus 204 ~~~~~~~~~~di~~~s~sK~~~~~gg~g~l~~~~-~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~t~~~~~~ 280 (398)
T 2fyf_A 204 GGLPVDIAETDAYYFAPQKNFASDGGLWLAIMSP-AALSR-IEAIAATGRWVPDFLSLPIAVENSLKNQTY-NTPAIATL 280 (398)
T ss_dssp TTSCCCGGGCSEEEECTTSTTCSCSSEEEEEECH-HHHHH-HHHHHHTTCCCCGGGCHHHHHHHHTTTCCS-SCCCHHHH
T ss_pred CCcccCcccCcEEEEecCcccCCCCceEEEEECH-HHHHH-hhcccccCCCCCcEEehHHHhhhcccCCCC-CCCCHHHH
Confidence 0 0 01222221 11000 000 0 00010 111 111 1122
Q ss_pred HHHHHHHHHccHHH-HHHHHHHHHHHHHHHHHHHhcCCCeEEeC-CC--Cce-eEEEEeeccccccccccccCccCCccH
Q psy13453 140 LKLWMTLRSYGLKG-LQAYLRKHISLAKKFADLVEQDDRFELVC-PP--SMG-LVCFRLKVRFWDKLDNLFGTISFGDND 214 (764)
Q Consensus 140 LklWatL~~lG~eG-y~~~i~~~i~lA~~l~~~I~~~p~~ell~-~P--~l~-iV~Fry~P~~~~~~~~~~~~~~~~~d~ 214 (764)
..+.++++.+..+| +.++.++..++++++.+.|++.++++++. +| ..+ +++|++.+ +.+
T Consensus 281 ~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~---------------~~~- 344 (398)
T 2fyf_A 281 ALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVD---------------DVD- 344 (398)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCSSEEEEEECT---------------TSC-
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCCcEEEEECCC---------------CCC-
Confidence 35677888777777 99999999999999999999999999875 34 356 78887631 111
Q ss_pred HHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13453 215 LNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATE 268 (764)
Q Consensus 215 ~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~ 268 (764)
..++.++|.++|..+......-+..++|+++.. .+++++++.+++.|+++.+
T Consensus 345 -~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~~~-~~t~e~i~~~~~~l~~~l~ 396 (398)
T 2fyf_A 345 -AGTVAKILRANGIVDTEPYRKLGRNQLRVAMFP-AVEPDDVSALTECVDWVVE 396 (398)
T ss_dssp -HHHHHHHHHHTTCBCCSCCTTTCSSEEEEECCT-TSCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHCCcEEecCcccCCCCEEEEEecC-CCCHHHHHHHHHHHHHHHH
Confidence 246888888888754322111124689998765 6679999999999988754
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.5e-05 Score=88.20 Aligned_cols=225 Identities=10% Similarity=0.015 Sum_probs=138.9
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCc
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPL 94 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wl 94 (764)
.|.|+..+++..|... +.+| .+|+++|+++|++... +++-+++-+....++|.+.|++++.+ ++|+
T Consensus 157 ~h~~~~~~~~~~g~~~---~~~~-----~~d~~~le~~l~~~~~-~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~l 227 (427)
T 2w8t_A 157 SHASIYDGCQQGNAEI---VRFR-----HNSVEDLDKRLGRLPK-EPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMV 227 (427)
T ss_dssp CCHHHHHHHHHSCSEE---EEEC-----TTCHHHHHHHHHTSCS-SSCEEEEEESEETTTTEECCHHHHHHHHHHTTCEE
T ss_pred ccHHHHHHHHHcCCee---EEeC-----CCCHHHHHHHHHhccC-CCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEE
Confidence 6889999999998755 6666 3799999999986321 13334455566688999999999886 8999
Q ss_pred eeccccccc-cc----e------------eeeecCCCccc--ccccc-ccccC--------CcccCCCCc-ccHHHHHHH
Q psy13453 95 KVGGVLRRV-YS----S------------CLVPRGQKSLR--TTVLF-HFLFQ--------HWQIPLGRR-FRALKLWMT 145 (764)
Q Consensus 95 HVDa~l~~~-y~----s------------~ll~rd~~~l~--~~~s~-~~d~~--------d~tle~SRr-~~ALklWat 145 (764)
++|.+.... ++ + +++..-.+.+- ..+-. ..++. .+...++-. .....+.++
T Consensus 228 i~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g~~gG~v~~~~~l~~~l~~~~~~~~~~~~~~~~~~aa~~~a 307 (427)
T 2w8t_A 228 LVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVGTVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTS 307 (427)
T ss_dssp EEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSCCEEEEECCTTGGGGGGTCHHHHSSCCCCHHHHHHHHHH
T ss_pred EEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhccCCCEEEeCHHHHHHHHHhcccccccCCCCHHHHHHHHHH
Confidence 999964211 10 0 00111111110 00000 00000 111112221 122233455
Q ss_pred HHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC-CceeEEEEeeccccccccccccCccCCccHHHHHHHHHHH
Q psy13453 146 LRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPP-SMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRII 224 (764)
Q Consensus 146 L~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P-~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~ 224 (764)
|+.+- .+.++.++..++++++.+.|++. ++++..++ ..+++.|++.. .....++.++|.
T Consensus 308 l~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-----------------~~~~~~l~~~L~ 367 (427)
T 2w8t_A 308 IRKLM--TAHEKRERLWSNARALHGGLKAM-GFRLGTETCDSAIVAVMLED-----------------QEQAAMMWQALL 367 (427)
T ss_dssp HHHHT--SCHHHHHHHHHHHHHHHHHHHHH-TCEESCSSCCSSEEEEEESS-----------------HHHHHHHHHHHH
T ss_pred HHHHh--cCHHHHHHHHHHHHHHHHHHHHc-CCcccCCCCCCCEEEEEECC-----------------HHHHHHHHHHHH
Confidence 55543 24678888889999999999987 88887566 67788776521 112357889999
Q ss_pred hcCcEEEEecee---CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHccC
Q psy13453 225 ARKVIYIVKGSF---QDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLRGK 274 (764)
Q Consensus 225 ~~G~~~vs~t~l---~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~~~ 274 (764)
++|..+...... .+..++|+++.. .+++++++.+++.|+++.+++.+..
T Consensus 368 ~~Gi~v~~~~~~~~~~~~~~lRi~~~~-~~t~e~i~~~~~~l~~~l~~~~~~~ 419 (427)
T 2w8t_A 368 DGGLYVNMARPPATPAGTFLLRCSICA-EHTPAQIQTVLGMFQAAGRAVGVIG 419 (427)
T ss_dssp HTTEECEEECTTTSCTTCEEEEEECCT-TCCHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HCCeEEeeeCCCCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHHHHHHHhCccc
Confidence 998754433211 234689997654 4578999999999999887764433
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=5.6e-06 Score=91.69 Aligned_cols=227 Identities=13% Similarity=0.017 Sum_probs=140.0
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCC--CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccC---chhhhc----
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLP--DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQS---LNAPVS---- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd--~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDp---i~~ia~---- 90 (764)
.+.+...++...|+.. +.+|++ .++.+|+++|+++|++. +.+++-+-++.++|.+-| ++++++
T Consensus 151 ~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~d~~~l~~~l~~~-----~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~ 222 (427)
T 3dyd_A 151 GFSLYKTLAESMGIEV---KLYNLLPEKSWEIDLKQLEYLIDEK-----TACLIVNNPSNPCGSVFSKRHLQKILAVAAR 222 (427)
T ss_dssp CCTHHHHHHHHTTCEE---EEEEEEGGGTTEECHHHHHSSCCTT-----EEEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHcCCEE---EEEecccccCCCCCHHHHHHHhccC-----CCEEEEECCCCCCCCCCCHHHHHHHHHHHHH
Confidence 3456778889999877 888886 46789999999998652 234455566889999988 777665
Q ss_pred -CCCceeccccccc------cce---------ee-eecCCCc--cccccccccccC-C---------------c--ccCC
Q psy13453 91 -NGPLKVGGVLRRV------YSS---------CL-VPRGQKS--LRTTVLFHFLFQ-H---------------W--QIPL 133 (764)
Q Consensus 91 -~~wlHVDa~l~~~------y~s---------~l-l~rd~~~--l~~~~s~~~d~~-d---------------~--tle~ 133 (764)
++++++|.+.... +.+ ++ +..-.+. +.+ +...+-.. + . ..-+
T Consensus 223 ~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G-~riG~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 301 (427)
T 3dyd_A 223 QCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPG-WRLGWILIHDRRDIFGNEIRDGLVKLSQRILG 301 (427)
T ss_dssp TTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGG-GCCEEEEEECSTTSSHHHHHHHHHHHHHHHCC
T ss_pred CCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCCCcC-cceEEEEecCcchhhHHHHHHHHHHHHhccCC
Confidence 8899999853211 100 01 0000110 000 00000000 0 0 0001
Q ss_pred CCcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCcc
Q psy13453 134 GRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDN 213 (764)
Q Consensus 134 SRr~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d 213 (764)
.-......+..+|.....+.+.++.++..+.++++.+.|+++|+++++.+.....+.++....... ...+
T Consensus 302 ~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p~~g~~~~~~l~~~~~~----------~~~~ 371 (427)
T 3dyd_A 302 PCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPSGAMYLMVGIEMEHFP----------EFEN 371 (427)
T ss_dssp SCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCSBTTEEEEEECGGGCT----------TCSS
T ss_pred CCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEecCHhhcC----------CCCC
Confidence 111222233444555568889999999999999999999999999876554444444444311000 0011
Q ss_pred HHHHHHHHHHH-hcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 214 DLNKAVYDRII-ARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 214 ~~n~~L~~~L~-~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
..++.++|. +.|.++..........++|++++ +++++++.+++.|.++.+++
T Consensus 372 --~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~~---~~~e~i~~~l~~l~~~l~~~ 424 (427)
T 3dyd_A 372 --DVEFTERLVAEQSVHCLPATCFEYPNFIRVVIT---VPEVMMLEACSRIQEFCEQH 424 (427)
T ss_dssp --HHHHHHHHHHHHCEECEEGGGGTCTTEEEEESC---SCHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHCCEEEECCcccCCCCeEEEEEC---CCHHHHHHHHHHHHHHHHHh
Confidence 245677775 67876665555555679999875 67899999999999887664
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=98.22 E-value=7.1e-06 Score=89.41 Aligned_cols=223 Identities=10% Similarity=0.027 Sum_probs=133.7
Q ss_pred HHHHHhhcCCCCCCeEEecCCCC---------CcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccC---chhhhc-
Q psy13453 24 SFKATHSLSGTPDQVRLSGLPDS---------EWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQS---LNAPVS- 90 (764)
Q Consensus 24 v~KAa~~LGl~~~~v~~Vpvd~~---------~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDp---i~~ia~- 90 (764)
+.+.+...|++. .++.+|++.. +.+|+++|+++|++. ++-+++.+...+++|.+-| ++++++
T Consensus 89 ~~~~~~~~g~~~-~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~----~~~~v~~~~~~~~~G~~~~~~~l~~i~~~ 163 (379)
T 3ke3_A 89 WTQILEKGKFAK-SSTVLTAERTEDTEAPKPFAPVDIETAVAKIKED----KSAIVYAPHVETSSGIILSEEYIKALSEA 163 (379)
T ss_dssp HHHHHHHHCCSS-EEEEEECEESSCCSSCCCEECCCHHHHHHHHHHH----TCSEEEEESEETTTTEECCHHHHHHHHHH
T ss_pred HHHHHHHhCCCC-ceEEEeccccccccccCCCCCCCHHHHHHHHhhc----CCcEEEEEeecCCCceeCCHHHHHHHHHH
Confidence 445666777643 3467777542 269999999999753 1224456778889999999 888775
Q ss_pred ----CCCceeccccc-------------------cc-cc-----eeeeecCCC--cccc--ccccccccCCcc-----c-
Q psy13453 91 ----NGPLKVGGVLR-------------------RV-YS-----SCLVPRGQK--SLRT--TVLFHFLFQHWQ-----I- 131 (764)
Q Consensus 91 ----~~wlHVDa~l~-------------------~~-y~-----s~ll~rd~~--~l~~--~~s~~~d~~d~t-----l- 131 (764)
++++|+|+... ++ ++ ++++.++.- .+.. ..+..+++..|. .
T Consensus 164 ~~~~~~~li~D~~~~g~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 243 (379)
T 3ke3_A 164 VHSVGGLLVIDCIASGCVWLDMKELGIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYE 243 (379)
T ss_dssp HHHTTCEEEEECTTCTTCCCCHHHHTCSEEEECTTTTTCSCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHH
T ss_pred HHHcCCEEEEEecccCCccccccccCCCEEEecchhhcCCCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhh
Confidence 89999997521 11 00 233322210 0000 000000000000 0
Q ss_pred CCCCc------c-cHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC--ceeEEEEeecccccccc
Q psy13453 132 PLGRR------F-RALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS--MGLVCFRLKVRFWDKLD 202 (764)
Q Consensus 132 e~SRr------~-~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~--l~iV~Fry~P~~~~~~~ 202 (764)
.++|. . ....+-+++..+-.+|+.++.++..++++++.+.|++. +++++.++. .+++.+...+
T Consensus 244 ~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~-g~~~~~~~~~~~~~i~~~~~~------- 315 (379)
T 3ke3_A 244 NGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDK-GIESVAAEGFEAPGVVVSYTE------- 315 (379)
T ss_dssp TTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSBCTTCBCSSEEEEECS-------
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCEecCCccccCceEEEEccC-------
Confidence 12221 1 11244566777778889999999999999999999987 888877653 4434332211
Q ss_pred ccccCccCCccHHHHHHHHHHHhcCcEEEEece-----eCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy13453 203 NLFGTISFGDNDLNKAVYDRIIARKVIYIVKGS-----FQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVL 271 (764)
Q Consensus 203 ~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~-----l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~ 271 (764)
+ . .....+.|.++|........ ..+...+|++++.. +++++|+.+++.|+++.+++.
T Consensus 316 --------~-~--~~~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~-~t~~di~~~~~~l~~~l~~~~ 377 (379)
T 3ke3_A 316 --------R-D--DMHKGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGL-DKLTDIDGTVERFEKALDEVL 377 (379)
T ss_dssp --------C-H--HHHSSHHHHHTTCCCEECCCCSSCCCTTCCEEEEECCSH-HHHTCHHHHHHHHHHHHHHHH
T ss_pred --------C-c--chHHHHHHHHCCeEEeCCccccccccCcCCEEEEeCCcC-CCHHHHHHHHHHHHHHHHHhc
Confidence 1 1 11225667788875433321 11246899976544 478999999999999887764
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.21 E-value=5.1e-06 Score=99.41 Aligned_cols=236 Identities=9% Similarity=-0.078 Sum_probs=142.3
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCC-----Ccc-----cHHHHHHHHHHH--h--hCCCCc-EEEEeeCCcccccccC
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDS-----EWL-----AYLTLRTIYESF--R--KSFLCP-MCSGYCGRTLHQDIQS 84 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~-----~rm-----D~~aLe~~I~~~--~--~~G~~p-~~VatAGTT~~G~iDp 84 (764)
.|+|+..++.+.|... +.+|++.+ +.+ |+++|+++|+++ . +.|.+| +++.+.+ +++|.+.|
T Consensus 254 ~h~s~~~~~~~~G~~~---v~v~~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~d 329 (755)
T 2vyc_A 254 CHKSIEQGLMLTGAKP---VYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYN 329 (755)
T ss_dssp CCHHHHHHHHHHCCEE---EEECCCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEEC
T ss_pred chHHHHHHHHHcCCEE---EEEeCCCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecC
Confidence 6999999999999877 88888643 346 999999999874 1 245555 4456667 57999999
Q ss_pred chhhhc-----CCCceecccccc--ccc-------ee-------------eeecCCCccccc--cc-ccc--c--cCCc-
Q psy13453 85 LNAPVS-----NGPLKVGGVLRR--VYS-------SC-------------LVPRGQKSLRTT--VL-FHF--L--FQHW- 129 (764)
Q Consensus 85 i~~ia~-----~~wlHVDa~l~~--~y~-------s~-------------ll~rd~~~l~~~--~s-~~~--d--~~d~- 129 (764)
++++++ ++++|||+++.. .+. .+ +...-.+.+..- .+ ... + +.+.
T Consensus 330 l~~I~~ia~~~~~~livDeA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~ 409 (755)
T 2vyc_A 330 AKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFS 409 (755)
T ss_dssp HHHHHHHHTTTCSEEEEECTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHH
T ss_pred HHHHHHHHHHcCCEEEEECcCchhcccCcccCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHH
Confidence 999886 889999997531 111 00 111111111100 00 000 0 0000
Q ss_pred -------ccCCCCc--ccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCC---------eEEeCCCCc-----
Q psy13453 130 -------QIPLGRR--FRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDR---------FELVCPPSM----- 186 (764)
Q Consensus 130 -------tle~SRr--~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~---------~ell~~P~l----- 186 (764)
.++.+-. .....+-++++.+-.+|..+++++.+++++++++.|+++++ |++++++..
T Consensus 410 ~~~~~~~~~~s~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (755)
T 2vyc_A 410 RFNQAYMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQT 489 (755)
T ss_dssp HHHHHHHHTSCSSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTT
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhcccccc
Confidence 1111111 11124455666666676788999999999999999999888 888886532
Q ss_pred --------------------------------------------eeEEEEeeccccccccccccCccCCccHHHHHHHHH
Q psy13453 187 --------------------------------------------GLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDR 222 (764)
Q Consensus 187 --------------------------------------------~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~ 222 (764)
..|.|...+-+..+. -...+.+ ...+.+.
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~-----~~~~g~~--~~~l~~~ 562 (755)
T 2vyc_A 490 GKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGE-----LEETGVP--AALVTAW 562 (755)
T ss_dssp CCEEEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSS-----BCSSCCC--HHHHHHH
T ss_pred ccccccccccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCC-----ccccCCc--HHHHHHH
Confidence 123332211000000 0000111 1467777
Q ss_pred HHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy13453 223 IIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVL 271 (764)
Q Consensus 223 L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~ 271 (764)
|.+.|.. . ...+...+|+ +.++.+|+++++.+++.|+++.+...
T Consensus 563 L~~~gI~---~-e~~~~~~v~~-~~~~g~t~~~~~~l~~al~~~~~~~~ 606 (755)
T 2vyc_A 563 LGRHGIV---P-TRTTDFQIMF-LFSMGVTRGKWGTLVNTLCSFKRHYD 606 (755)
T ss_dssp HHTTTCC---C-SEECSSEEEE-ECCTTCCTTTTHHHHHHHHHHHHHHH
T ss_pred HHHCCCE---E-eecCCCeEEE-EECCCCCHHHHHHHHHHHHHHHHhhh
Confidence 8777752 1 2224567887 45677799999999999999987653
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=98.19 E-value=2e-05 Score=84.22 Aligned_cols=215 Identities=9% Similarity=-0.026 Sum_probs=134.1
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-------CC
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-------NG 92 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-------~~ 92 (764)
.|.++..+++..|... +.+|+++++.+|+++|+++|++. .++-+++-+.++.++|.+=|++++.+ ++
T Consensus 101 ~~~~~~~~~~~~g~~~---~~~~~~~~~~~d~~~l~~~l~~~---~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~ 174 (354)
T 3ly1_A 101 TYGDGEHFAKIAGMKV---TKVKMLDNWAFDIEGLKAAVAAY---SGPSIVYLVNPNNPTGTITPADVIEPWIASKPANT 174 (354)
T ss_dssp SCTHHHHHHHHTTCEE---EEECCCTTSCCCHHHHHHHHHTC---SSCEEEEEESSCTTTCCCCCHHHHHHHHHTCCTTE
T ss_pred CchHHHHHHHHcCCEE---EEecCCCCCCCCHHHHHHHhccC---CCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCe
Confidence 5678889999999877 99999988999999999999831 12224445778999999977776443 67
Q ss_pred Cceeccccccc-cc----e------------eeeecCCCccc-ccccccc-----c----cCCcccCCCCcccHHHHHHH
Q psy13453 93 PLKVGGVLRRV-YS----S------------CLVPRGQKSLR-TTVLFHF-----L----FQHWQIPLGRRFRALKLWMT 145 (764)
Q Consensus 93 wlHVDa~l~~~-y~----s------------~ll~rd~~~l~-~~~s~~~-----d----~~d~tle~SRr~~ALklWat 145 (764)
++++|...... +. + +++..-.+.+- ..+...+ + +....-.+ ....+..+++
T Consensus 175 ~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~ 252 (354)
T 3ly1_A 175 MFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAHPTVIALMGRYVAGE--KINFSGVDAA 252 (354)
T ss_dssp EEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECCHHHHHHHGGGTTCS--CCCHHHHHHH
T ss_pred EEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecCHHHHHHHHHhcCCC--CCCHHHHHHH
Confidence 89999864211 00 0 11111111111 0000000 0 00000001 2334444444
Q ss_pred HHHcc-HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHH
Q psy13453 146 LRSYG-LKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRII 224 (764)
Q Consensus 146 L~~lG-~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~ 224 (764)
...+- .+.+.++.++..+.++++.+.+++. ++++. ++.-+.+.+++. . + ..++.+.|.
T Consensus 253 ~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~-~~~~~~~~~~~~----------------~-~--~~~~~~~l~ 311 (354)
T 3ly1_A 253 LASMNDSAFITYSKKSNDVSRQILLKALEDL-KLPYL-PSEGNFVFHQLV----------------V-P--LKDYQTHMA 311 (354)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCCSSEEEEECS----------------S-C--HHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeEC-CCCceEEEEECC----------------C-C--HHHHHHHHH
Confidence 44442 2667888888899999999999987 77765 455555666542 1 1 246788888
Q ss_pred hcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13453 225 ARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATE 268 (764)
Q Consensus 225 ~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~ 268 (764)
+.|.... .....+..++|+++. ++++++.+++.|+++.+
T Consensus 312 ~~gi~v~-g~~~~~~~~iRis~~----~~~~i~~~~~~l~~~l~ 350 (354)
T 3ly1_A 312 DAGVLIG-RAFPPADNWCRISLG----TPQEMQWVADTMREFRK 350 (354)
T ss_dssp HTTEECC-CCCTTCTTEEEEECC----CHHHHHHHHHHHHHHHH
T ss_pred HCCEEEe-ecCCCCCCEEEEEcC----CHHHHHHHHHHHHHHHH
Confidence 8887543 222234678999865 68999999999988753
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=1.3e-05 Score=86.43 Aligned_cols=222 Identities=9% Similarity=0.048 Sum_probs=131.2
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCC--CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccC---chhhhc----
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLP--DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQS---LNAPVS---- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd--~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDp---i~~ia~---- 90 (764)
.|.+...++..+|... +.||++ ..+.+|+++|+++|+++ +-+++-+.+..++|.+-| ++++++
T Consensus 114 ~~~~~~~~~~~~g~~~---~~v~~~~~~~~~~d~~~l~~~l~~~-----~~~v~~~~~~nptG~~~~~~~l~~i~~la~~ 185 (375)
T 3op7_A 114 TYQQLYDIPKSLGAEV---DLWQIEEENGWLPDLEKLRQLIRPT-----TKMICINNANNPTGAVMDRTYLEELVEIASE 185 (375)
T ss_dssp SCTHHHHHHHHTTCEE---EEEEEEGGGTTEECHHHHHHHCCTT-----CCEEEEESSCTTTCCCCCHHHHHHHHHHHHT
T ss_pred CchhHHHHHHHcCCEE---EEEeccccCCCCCCHHHHHHhhccC-----CeEEEEcCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4567888899999877 889987 35679999999999742 235556678899999999 777665
Q ss_pred -CCCceeccccccc----cc--------eeeeecCCCccc-ccccccc-----c----cCCcccCCCCcccHHHHHHHHH
Q psy13453 91 -NGPLKVGGVLRRV----YS--------SCLVPRGQKSLR-TTVLFHF-----L----FQHWQIPLGRRFRALKLWMTLR 147 (764)
Q Consensus 91 -~~wlHVDa~l~~~----y~--------s~ll~rd~~~l~-~~~s~~~-----d----~~d~tle~SRr~~ALklWatL~ 147 (764)
++++++|.+.... .. .+.+..-.+.+- ..+...+ + +....-..+-....+..+++..
T Consensus 186 ~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (375)
T 3op7_A 186 VGAYILSDEVYRSFSELDVPSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAANHQVTDILRDYRDYTMICAGVFDDLVAQL 265 (375)
T ss_dssp TTCEEEEECCSCCCSSSCCCCHHHHCTTEEEEEESSSSSSCGGGCCEEEECCHHHHHHHTTTGGGTTSCCCHHHHHHHHH
T ss_pred cCCEEEEEcccccccccCCCchhhhcCCEEEEeEChhhcCCcccceEEEEeCHHHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 8999999864221 00 011111112211 0000000 0 0111000111122333333333
Q ss_pred Hc--cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHH-H
Q psy13453 148 SY--GLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRI-I 224 (764)
Q Consensus 148 ~l--G~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L-~ 224 (764)
.+ ..+.+.++.++.-+.++++.+.+++.++++++.+.....+.+++. . ..+ ..++.+++ .
T Consensus 266 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~--------------~~~--~~~~~~~ll~ 328 (375)
T 3op7_A 266 ALAHYQEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIA-V--------------DMP--MEDFCLQLLQ 328 (375)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEEC-C--------------SSC--HHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcC-C--------------CCC--HHHHHHHHHH
Confidence 32 234456666666888999999999989998765443333333332 1 111 24566666 5
Q ss_pred hcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 225 ARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 225 ~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
+.|..+..........++|++++.+ .++++.+++.|.++.++
T Consensus 329 ~~gi~v~~g~~~~~~~~iRi~~~~~---~~~i~~~l~~l~~~l~~ 370 (375)
T 3op7_A 329 EHGVLLVPGNRFERDGYVRLGFACE---QETLIKGLEKLSQFLRR 370 (375)
T ss_dssp HHCEECEEGGGGTCTTEEEECCCSC---HHHHHHHHHHHHHHHGG
T ss_pred hCCEEEeChhhhCCCCeEEEEecCC---HHHHHHHHHHHHHHHHH
Confidence 6787665554444467899986653 48999999999887654
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=6.2e-06 Score=89.32 Aligned_cols=218 Identities=13% Similarity=0.054 Sum_probs=129.5
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCC---CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccC---chhhhc---
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLP---DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQS---LNAPVS--- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd---~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDp---i~~ia~--- 90 (764)
.|.++.++++..|... +.||++ +++.+|+++|+++|++. +-+++-+.++.++|.+=| ++++++
T Consensus 111 ~~~~~~~~~~~~g~~~---~~v~~~~~~~~~~~d~~~l~~~l~~~-----~~~v~~~~~~nptG~~~~~~~l~~i~~~~~ 182 (381)
T 1v2d_A 111 FFDVYLPDAFLAGAKA---RLVRLDLTPEGFRLDLSALEKALTPR-----TRALLLNTPMNPTGLVFGERELEAIARLAR 182 (381)
T ss_dssp CCTTHHHHHHHTTCEE---EEEECEEETTEEECCHHHHHTTCCTT-----EEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred CchhHHHHHHHcCCEE---EEEeCCCCCccCCcCHHHHHHhcCcC-----CEEEEECCCCCCCCCccCHHHHHHHHHHHH
Confidence 5678888999999876 999997 57899999999988532 224455678899999844 666654
Q ss_pred --CCCceeccccccc-c----cee---------eeecCCCccc-cccccccccCCccc---------CCCCcccHHHHHH
Q psy13453 91 --NGPLKVGGVLRRV-Y----SSC---------LVPRGQKSLR-TTVLFHFLFQHWQI---------PLGRRFRALKLWM 144 (764)
Q Consensus 91 --~~wlHVDa~l~~~-y----~s~---------ll~rd~~~l~-~~~s~~~d~~d~tl---------e~SRr~~ALklWa 144 (764)
++++++|.+.... + .++ ++..-.+.+- ..+...+-+.+..+ ..+-....+..++
T Consensus 183 ~~~~~li~De~~~~~~~g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 262 (381)
T 1v2d_A 183 AHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAG 262 (381)
T ss_dssp HTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHHHHHHHHHTSSCCHHHHHH
T ss_pred HcCCEEEEEcCccccccCCCCCCHHHhcCCCEEEEeechhhcCCcccceEEEEeCHHHHHHHHHHHhhcccCCCcHHHHH
Confidence 8899999964211 0 010 0000000000 00000000000000 0000112233333
Q ss_pred HHHHc--c--HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHH
Q psy13453 145 TLRSY--G--LKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVY 220 (764)
Q Consensus 145 tL~~l--G--~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~ 220 (764)
....+ + .+++.++.++..+.++++.+.|++ .+++++.+..-..+.+++. ..+ +.
T Consensus 263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~~~----------------~~~-----~~ 320 (381)
T 1v2d_A 263 VAEALKLARREGFYEALREGYRRRRDLLAGGLRA-MGLRVYVPEGTYFLMAELP----------------GWD-----AF 320 (381)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH-TTCCEECCSBSSEEEEECT----------------TCC-----HH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHH-CCCEecCCCcceEEEEecC----------------hHh-----HH
Confidence 32222 2 566788889999999999999998 4888776443334555432 111 56
Q ss_pred HHHHhcCcEEEEeceeC----CeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 221 DRIIARKVIYIVKGSFQ----DRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 221 ~~L~~~G~~~vs~t~l~----g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
+.+.+.|..+....... +..++|+++.. ++++++.+++.|+++.++.
T Consensus 321 ~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~---~~~~i~~~~~~l~~~l~~~ 371 (381)
T 1v2d_A 321 RLVEEARVALIPASAFYLEDPPKDLFRFAFCK---TEEELHLALERLGRVVNSP 371 (381)
T ss_dssp HHHHHTCEECEEGGGGCSSSCCTTEEEEECCS---CHHHHHHHHHHHHHHC---
T ss_pred HHHHhCCEEEecchHhCCCCCCCCEEEEEeCC---CHHHHHHHHHHHHHHHhhc
Confidence 66778887655443332 35689998876 7899999999998876554
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=2.2e-05 Score=86.05 Aligned_cols=228 Identities=9% Similarity=-0.021 Sum_probs=136.0
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCC--CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccC---chhhhc----
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPD--SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQS---LNAPVS---- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~--~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDp---i~~ia~---- 90 (764)
.|.++..++...|... +.||+++ ++.+|+++|+++|++. +.+++-+-+..++|.+-| ++++++
T Consensus 137 ~y~~~~~~~~~~g~~~---~~v~~~~~~~~~~d~~~l~~~l~~~-----~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~ 208 (416)
T 1bw0_A 137 GFPHYETVCKAYGIGM---HFYNCRPENDWEADLDEIRRLKDDK-----TKLLIVTNPSNPCGSNFSRKHVEDIVRLAEE 208 (416)
T ss_dssp CCTHHHHHHHHTTCEE---EEEEEEGGGTTEECHHHHHHHCCTT-----EEEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHcCcEE---EEeecCcccCCCCCHHHHHHHhccC-----CeEEEEeCCCCCCCcccCHHHHHHHHHHHHH
Confidence 3556788899999876 8888874 4789999999998642 234444447889999988 666665
Q ss_pred -CCCceecccccc----------cccee---------e-eecCCCccc-cccccccccC-Cc-----ccC--------CC
Q psy13453 91 -NGPLKVGGVLRR----------VYSSC---------L-VPRGQKSLR-TTVLFHFLFQ-HW-----QIP--------LG 134 (764)
Q Consensus 91 -~~wlHVDa~l~~----------~y~s~---------l-l~rd~~~l~-~~~s~~~d~~-d~-----tle--------~S 134 (764)
++++++|..... .+.++ + +..-.+.+- .-+...+-.. +. .+. .+
T Consensus 209 ~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (416)
T 1bw0_A 209 LRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLV 288 (416)
T ss_dssp HTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHH
T ss_pred cCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhCCCCCceEEEEEeeCchhhHHHHHHHHHHHhccc
Confidence 889999996422 11110 0 000011100 0000000000 00 000 00
Q ss_pred CcccHHHH---HHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCC
Q psy13453 135 RRFRALKL---WMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFG 211 (764)
Q Consensus 135 Rr~~ALkl---WatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~ 211 (764)
-....+.. ..+|...+.+++.++.++..+.++++.+.|++.|+++++.+...+.+.+++...... ..
T Consensus 289 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~----------~~ 358 (416)
T 1bw0_A 289 CGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYR----------DI 358 (416)
T ss_dssp TCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGGBS----------SC
T ss_pred cCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEEEEEeCCHHHcC----------CC
Confidence 01222322 333444467888999999999999999999998899876543344455555311000 00
Q ss_pred ccHHHHHHHHHHH-hcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 212 DNDLNKAVYDRII-ARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 212 ~d~~n~~L~~~L~-~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
.+ ..++.++|. +.|..+..........++|+++. +++++++..++.|.++.++.
T Consensus 359 ~~--~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~~---~~~e~l~~~l~~l~~~l~~~ 413 (416)
T 1bw0_A 359 KT--DVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTT---RPVEVYREAVERIKAFCQRH 413 (416)
T ss_dssp CS--HHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC---SCHHHHHHHHHHHHHHHHHH
T ss_pred CC--HHHHHHHHHHHCCEEEecccccCCCCeEEEEec---CCHHHHHHHHHHHHHHHHHh
Confidence 11 246777774 77876655444433568999884 57889999999998876553
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.18 E-value=6.9e-06 Score=90.60 Aligned_cols=220 Identities=10% Similarity=0.018 Sum_probs=134.2
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCC-C--CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccc---cCchhhhc---
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLP-D--SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDI---QSLNAPVS--- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd-~--~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~i---Dpi~~ia~--- 90 (764)
.|+++..++..+|... +.+|++ . ++++|+++|+++|++. ++-+++-..+..++|.+ ++++++++
T Consensus 152 ~y~~~~~~~~~~g~~~---~~~~~~~~~~~~~~d~~~le~~i~~~----~~~~vil~~p~nptG~~~~~~~l~~l~~l~~ 224 (421)
T 3l8a_A 152 VYYPFARTIRLNDHRL---VENSLQIINGRFEIDFEQLEKDIIDN----NVKIYLLCSPHNPGGRVWDNDDLIKIAELCK 224 (421)
T ss_dssp CCHHHHHHHHHTTEEE---EEEECEEETTEEECCHHHHHHHHHHT----TEEEEEEESSBTTTTBCCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHCCCEE---EeccccccCCCeeeCHHHHHHHhhcc----CCeEEEECCCCCCCCCcCCHHHHHHHHHHHH
Confidence 4677888999998876 889986 3 4589999999999842 12244456789999999 88888776
Q ss_pred --CCCceeccccccc------cce------------eeeecCCCccc-cccccc----c--cc--------CCcccCCCC
Q psy13453 91 --NGPLKVGGVLRRV------YSS------------CLVPRGQKSLR-TTVLFH----F--LF--------QHWQIPLGR 135 (764)
Q Consensus 91 --~~wlHVDa~l~~~------y~s------------~ll~rd~~~l~-~~~s~~----~--d~--------~d~tle~SR 135 (764)
++++++|...... +.+ +.+..-.+.+- .-+... . +. ..++..+.-
T Consensus 225 ~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~~~~~~~~~n 304 (421)
T 3l8a_A 225 KHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQLANNQHEVP 304 (421)
T ss_dssp HHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTCSCCC
T ss_pred HcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHHHHhcccCCCC
Confidence 8999999964210 000 01110011110 000000 0 00 011111222
Q ss_pred cccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEE-EEeeccccccccccccCccCCccH
Q psy13453 136 RFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVC-FRLKVRFWDKLDNLFGTISFGDND 214 (764)
Q Consensus 136 r~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~-Fry~P~~~~~~~~~~~~~~~~~d~ 214 (764)
......+.+++.. +.+.+.++.++..++.+++.+.|++.|+++++.+. -+.+. +.+...+. +
T Consensus 305 ~~~~~a~~aal~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~~~-~~~~~~v~~~~~~~------------~--- 367 (421)
T 3l8a_A 305 TVGMIATQAAFQY-GKPWLEELKTVIEGNIKLVIKELEAKTKIKVMEPE-GTYLVWLDFSAYAI------------A--- 367 (421)
T ss_dssp HHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSCEEECCS-BSSEEEEECGGGTC------------C---
T ss_pred HHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhCCCceEeCCC-eeEEEEEeccccCC------------C---
Confidence 2233344455553 67778888899999999999999988899887544 34444 44321100 1
Q ss_pred HHHHHHHHHHh-cCcEEEEecee--CCeeEEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13453 215 LNKAVYDRIIA-RKVIYIVKGSF--QDRLFMRFAICSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 215 ~n~~L~~~L~~-~G~~~vs~t~l--~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~ 267 (764)
..++.++|.+ .|......... .+..++|+++. +++++++++++.|+++.
T Consensus 368 -~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~---~~~~~i~~~l~~l~~~l 419 (421)
T 3l8a_A 368 -QPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVA---TPKNTVQEALSRIISVF 419 (421)
T ss_dssp -TTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC---SCHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEec---CCHHHHHHHHHHHHHHH
Confidence 1357777865 47654443322 34578999866 57899999999988764
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=1.2e-05 Score=88.60 Aligned_cols=222 Identities=9% Similarity=-0.008 Sum_probs=135.5
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCC-CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCC
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPD-SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGP 93 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~-~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~w 93 (764)
.|.++..++...|... +.||+++ ++.+|+++|+++|++. +-+++. +.++|.+.|++++++ +++
T Consensus 91 ~~~~~~~~~~~~g~~~---~~~~~~~~~~~~d~~~l~~~i~~~-----~~~v~~---~~~~G~~~~~~~i~~~~~~~~~~ 159 (418)
T 2c81_A 91 TWIATATAVLNVNALP---VFVDVEADTYCIDPQLIKSAITDK-----TKAIIP---VHLFGSMANMDEINEIAQEHNLF 159 (418)
T ss_dssp SCTHHHHHHHHTTCEE---EEECBCTTTCSBCHHHHGGGCCTT-----EEEECC---BCCTTCCCCHHHHHHHHHHTTCE
T ss_pred ccHhHHHHHHHcCCEE---EEEecCCCCCCcCHHHHHHhhCCC-----CeEEEE---eCCcCCcccHHHHHHHHHHCCCE
Confidence 5788999999999876 9999986 8899999999998642 113322 347899999999886 889
Q ss_pred ceeccccccc--c-----c---------------------eeeeecCCCccccccccccccCC------------c----
Q psy13453 94 LKVGGVLRRV--Y-----S---------------------SCLVPRGQKSLRTTVLFHFLFQH------------W---- 129 (764)
Q Consensus 94 lHVDa~l~~~--y-----~---------------------s~ll~rd~~~l~~~~s~~~d~~d------------~---- 129 (764)
+++|++.... + . ++++.++++.... +.....++. +
T Consensus 160 li~D~a~~~~~~~~~~~~~~~~~~~~~s~s~~K~~~~g~~g~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (418)
T 2c81_A 160 VIEDCAQSHGSVWNNQRAGTIGDIGAFSCQQGKVLTAGEGGIIVTKNPRLFEL-IQQLRADSRVYCDDSSELMHGDMQLV 238 (418)
T ss_dssp EEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHH-HHHHHBTTEEECSCGGGCCTTCBSEE
T ss_pred EEEECcccccCccCCEecccccceEEEeccCCcccCCCCeEEEEECCHHHHHH-HHHHHHhCccccccccccccchhhcc
Confidence 9999953111 1 0 1222211110000 000000000 1
Q ss_pred ---cc-CCCCcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCc------eeEEEEeeccccc
Q psy13453 130 ---QI-PLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSM------GLVCFRLKVRFWD 199 (764)
Q Consensus 130 ---tl-e~SRr~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l------~iV~Fry~P~~~~ 199 (764)
.+ ....+...+..++.+. ..+++.++.++..++++++.+.|++.|++++..+|+- .+++|++.....
T Consensus 239 ~~~~~~g~~~~~~~~~aa~~~~--~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~- 315 (418)
T 2c81_A 239 KKGDIQGSNYCLSEFQSAILLD--QLQELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYYGYVFRFDPVKF- 315 (418)
T ss_dssp ECCSSCCCBCCCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCCSEEEEEECGGGT-
T ss_pred ccccccCcCCCcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcccccEEEEEEEccccc-
Confidence 11 1122344444433332 3456788889999999999999999999999866543 255566531000
Q ss_pred cccccccCccCCccHHHHHHHHHHHhc-CcE---EEEec-eeC--------------------------C---------e
Q psy13453 200 KLDNLFGTISFGDNDLNKAVYDRIIAR-KVI---YIVKG-SFQ--------------------------D---------R 239 (764)
Q Consensus 200 ~~~~~~~~~~~~~d~~n~~L~~~L~~~-G~~---~vs~t-~l~--------------------------g---------~ 239 (764)
.+.+ ..++.+.|.++ |.. .-... .++ + .
T Consensus 316 ----------~~~~--~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (418)
T 2c81_A 316 ----------GGLN--ADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASG 383 (418)
T ss_dssp ----------TTCC--HHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHH
T ss_pred ----------cccC--HHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCChHHHHHHh
Confidence 0111 14677888888 875 32211 000 1 1
Q ss_pred eEEEEeccCCCC-CHHHHHHHHHHHHHHHHH
Q psy13453 240 LFMRFAICSSQT-EESDVQLGWNEIRTATEE 269 (764)
Q Consensus 240 ~~LRi~v~np~T-t~e~i~~~l~~l~~~~~~ 269 (764)
..||++ +++.+ ++++++.+++.|+++.++
T Consensus 384 ~~lrl~-~~~~~gt~edi~~~~~~l~~~~~~ 413 (418)
T 2c81_A 384 QSIVIH-HAILLAEPSHLSLLVDAVAELARK 413 (418)
T ss_dssp HEEEEE-GGGGGSCHHHHHHHHHHHHHHHHT
T ss_pred CEEEec-CCccCCCHHHHHHHHHHHHHHHHh
Confidence 489985 66777 999999999999988654
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.2e-06 Score=94.86 Aligned_cols=217 Identities=9% Similarity=0.034 Sum_probs=133.6
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCC-CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCC
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLP-DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGP 93 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd-~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~w 93 (764)
.|.|+..++...|... +.+|++ +++.+|+++|+++|++. +-+|. .+.++|.+.|++++.+ +++
T Consensus 85 ~~~~~~~~~~~~g~~~---~~~~~~~~~~~~d~~~l~~~l~~~------~~~v~--~~n~~G~~~~l~~i~~l~~~~~~~ 153 (373)
T 3frk_A 85 TFIATALAVSYTGAKP---IFVEPDIRTYNIDPSLIESAITEK------TKAII--AVHLYGQPADMDEIKRIAKKYNLK 153 (373)
T ss_dssp SCTHHHHHHHHHSCEE---EEECEETTTTEECGGGTGGGCCTT------EEEEE--EECCTTCCCCHHHHHHHHHHHTCE
T ss_pred CcHHHHHHHHHcCCEE---EEEeccccccCcCHHHHHHhcCCC------CeEEE--EECCCcCcccHHHHHHHHHHcCCE
Confidence 6889999999999877 999998 68899999999988652 22322 5568999999999886 899
Q ss_pred ceecccccc--cc-----c---eeeeec--CCCcccc----ccccc--c----------ccC---Ccc-cCCCCcccHHH
Q psy13453 94 LKVGGVLRR--VY-----S---SCLVPR--GQKSLRT----TVLFH--F----------LFQ---HWQ-IPLGRRFRALK 141 (764)
Q Consensus 94 lHVDa~l~~--~y-----~---s~ll~r--d~~~l~~----~~s~~--~----------d~~---d~t-le~SRr~~ALk 141 (764)
+++|++... .+ + -++.+. ..+.+.. .+-.. . ..+ .++ ...+.......
T Consensus 154 li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~ 233 (373)
T 3frk_A 154 LIEDAAQAHGSLYKGMKVGSLGDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRLDE 233 (373)
T ss_dssp EEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSSCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCH
T ss_pred EEEECCcccCCEECCEeccccccEEEEeCcCCCccCccceeEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCCCCH
Confidence 999996321 11 1 111111 0111111 00000 0 000 000 01111222234
Q ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCce---eEEEEeeccccccccccccCccCCccHHHHH
Q psy13453 142 LWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMG---LVCFRLKVRFWDKLDNLFGTISFGDNDLNKA 218 (764)
Q Consensus 142 lWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~---iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~ 218 (764)
+.+++.....+++.++.++..++++++.+.+++.+ +++...+.-. .+.|.... . + ..+
T Consensus 234 ~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~-~--~~~ 294 (373)
T 3frk_A 234 LQAGFLRVKLKYLDKWNEERRKIAQKYIAGINNPN-VIIPVEADYAKHVWYTFVIRS---------------E-K--RDE 294 (373)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEECCCSSEEEEE---------------S-S--HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-eEeccCCCCCceeeEEEEEEe---------------C-C--HHH
Confidence 55555555677888999999999999999999987 7765443321 12232211 0 1 246
Q ss_pred HHHHHHhcCcEEEEec--eeC---------------------CeeEEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13453 219 VYDRIIARKVIYIVKG--SFQ---------------------DRLFMRFAICSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 219 L~~~L~~~G~~~vs~t--~l~---------------------g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~ 267 (764)
+.++|.++|...-... ..+ ....+|+ .+++.+|++|++.+++.|++..
T Consensus 295 l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl-~~~~~~t~~di~~~~~~l~~~~ 365 (373)
T 3frk_A 295 LQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSI-PIWYGMKNEEIEYVIDKINAWK 365 (373)
T ss_dssp HHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEE-CCCTTCCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEc-cCCCCCCHHHHHHHHHHHHHHh
Confidence 8888888887432111 110 0167998 5788889999999999887653
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.12 E-value=9.7e-06 Score=89.50 Aligned_cols=223 Identities=9% Similarity=-0.028 Sum_probs=138.0
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCC-CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCC
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPD-SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGP 93 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~-~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~w 93 (764)
.|.++..++...|+.. +.||+++ ++.+|+++|+++|++. +-+++.+ .++|.+++++++++ +++
T Consensus 99 ~~~~~~~~~~~~G~~~---~~v~~~~~~~~~d~~~l~~~i~~~-----~~~v~~~---~~tG~~~~l~~i~~la~~~~~~ 167 (424)
T 2po3_A 99 TFAATPHALRWIGLTP---VFADIDPDTGNLDPDQVAAAVTPR-----TSAVVGV---HLWGRPCAADQLRKVADEHGLR 167 (424)
T ss_dssp SCTHHHHHHHHTTCEE---EEECBCTTTSSBCHHHHGGGCCTT-----EEEEEEE---CGGGCCCCHHHHHHHHHHTTCE
T ss_pred ccHHHHHHHHHcCCEE---EEEecCCCcCCcCHHHHHHhhCcC-----CcEEEEE---CCCCCcCCHHHHHHHHHHcCCE
Confidence 5778888999999877 9999986 7899999999988642 1233322 27899999999876 889
Q ss_pred ceecccccc--cc--------c------------------eeeeecCCCccccccccccccC---Ccc---cCCCCcccH
Q psy13453 94 LKVGGVLRR--VY--------S------------------SCLVPRGQKSLRTTVLFHFLFQ---HWQ---IPLGRRFRA 139 (764)
Q Consensus 94 lHVDa~l~~--~y--------~------------------s~ll~rd~~~l~~~~s~~~d~~---d~t---le~SRr~~A 139 (764)
+++|++... .+ + ++++.++++.... +......+ .++ .....+...
T Consensus 168 li~Dea~~~g~~~~~~~~~~~~di~~~S~sk~K~l~~~~~G~~v~~~~~l~~~-l~~~~~~~~~~~~~~~~~g~~~~~~~ 246 (424)
T 2po3_A 168 LYFDAAHALGCAVDGRPAGSLGDAEVFSFHATKAVNAFEGGAVVTDDADLAAR-IRALHNFGFDLPGGSPAGGTNAKMSE 246 (424)
T ss_dssp EEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHH-HHHHHBTTTTCTTCCTTCCCBCCCCH
T ss_pred EEEECccccCCeECCeecccccCEEEEeCCCCCCccCCCCeEEEeCCHHHHHH-HHHHHhcCccccccccccCcCCCcCH
Confidence 999996421 11 0 1111111110000 00000000 111 112235556
Q ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC-----ceeEEEEeeccccccccccccCccCCccH
Q psy13453 140 LKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS-----MGLVCFRLKVRFWDKLDNLFGTISFGDND 214 (764)
Q Consensus 140 LklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~-----l~iV~Fry~P~~~~~~~~~~~~~~~~~d~ 214 (764)
+..++.+.. .+++.++.++..++++++.+.|++.+++++..+|+ ..++.|++.+... +.+
T Consensus 247 ~~aa~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~------------~~~- 311 (424)
T 2po3_A 247 AAAAMGLTS--LDAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVEIDEATT------------GIH- 311 (424)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCCEEEEECHHHH------------SSC-
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccEEEEEEECCccc------------hhh-
Confidence 666666653 56788889999999999999999999999886443 2456565431000 011
Q ss_pred HHHHHHHHHHhcCcEEEEec--eeC------------CeeE-------EEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy13453 215 LNKAVYDRIIARKVIYIVKG--SFQ------------DRLF-------MRFAICSSQTEESDVQLGWNEIRTATEEVL 271 (764)
Q Consensus 215 ~n~~L~~~L~~~G~~~vs~t--~l~------------g~~~-------LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~ 271 (764)
..++.+.|.+.|....... .++ .+.. ||+. ++..+++++++.+++.|+++.+...
T Consensus 312 -~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~-~~~~~t~e~i~~~~~~L~~~~~~~~ 387 (424)
T 2po3_A 312 -RDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLP-TGTAIGDDDIRRVADLLRLCATRGR 387 (424)
T ss_dssp -HHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEEC-CSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEee-CCCCCCHHHHHHHHHHHHHHHhhhH
Confidence 2467788888887543211 110 0122 5653 5788899999999999988876654
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=98.12 E-value=6.2e-05 Score=80.42 Aligned_cols=218 Identities=11% Similarity=0.102 Sum_probs=136.6
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchh---hhc-----C
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNA---PVS-----N 91 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~---ia~-----~ 91 (764)
.|.++..++...|... +.+|+++++.+|+++|+++|++ +-+++-+.++.++|.+=|.++ +++ +
T Consensus 107 ~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~l~~~l~~------~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~ 177 (361)
T 3ftb_A 107 SYAEYEINAKKHGVSV---VFSYLDENMCIDYEDIISKIDD------VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKK 177 (361)
T ss_dssp CCTHHHHHHHHTTCEE---EEEECCTTSCCCHHHHHHHTTT------CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHcCCeE---EEeecCcccCCCHHHHHHhccC------CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcC
Confidence 4667888999999877 9999998889999999998864 224556677899999866444 443 8
Q ss_pred CCceecccccc-------ccc-------e-eeeecCCCccc-ccccccccc-CCcc----c---CCCCcccHHHHHHHHH
Q psy13453 92 GPLKVGGVLRR-------VYS-------S-CLVPRGQKSLR-TTVLFHFLF-QHWQ----I---PLGRRFRALKLWMTLR 147 (764)
Q Consensus 92 ~wlHVDa~l~~-------~y~-------s-~ll~rd~~~l~-~~~s~~~d~-~d~t----l---e~SRr~~ALklWatL~ 147 (764)
+++++|.+... ... . +++..-.+.+- ..+...+-. .+.. + ..+-....+..++...
T Consensus 178 ~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (361)
T 3ftb_A 178 KTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQNPWNINCFAEMAAIN 257 (361)
T ss_dssp CEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHHTTSCTTCSCHHHHHHHHH
T ss_pred CEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHHHHHHhhCCCCCCCHHHHHHHHH
Confidence 99999986421 100 0 11111111111 000000000 0000 0 0001334455555544
Q ss_pred Hcc-HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhc
Q psy13453 148 SYG-LKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIAR 226 (764)
Q Consensus 148 ~lG-~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~ 226 (764)
.+- .+.+.++.++..++++++.+.+++.|+++.+.+|.-+.+.|++.. .+ ..++.++|.++
T Consensus 258 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~----------------~~--~~~l~~~l~~~ 319 (361)
T 3ftb_A 258 CLKDTNYIEESLLWIKKERKRFIEELNKIGFIKRVFSPHANFVLCRLEN----------------IS--GEKLYDSLLKE 319 (361)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCSSSEEEEEESS----------------SC--HHHHHHHHHTT
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCCceecCCCCeEEEEEcCC----------------CC--HHHHHHHHHHC
Confidence 443 466788888899999999999999999983345566666676531 01 24688889888
Q ss_pred CcEEEEeceeC--CeeEEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13453 227 KVIYIVKGSFQ--DRLFMRFAICSSQTEESDVQLGWNEIRTATE 268 (764)
Q Consensus 227 G~~~vs~t~l~--g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~ 268 (764)
|..+....... +..++|+++. ++++++.+++.++++.+
T Consensus 320 gi~v~~g~~~~~~~~~~iRis~~----~~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 320 DIVIRRCCNFIGLDDSFVRFAIK----DEKKNTKFLRALKGVEN 359 (361)
T ss_dssp TEECEECTTSTTCCTTEEEEECC----CHHHHHHHHHHHHHHHH
T ss_pred CeEEeeCccCCCCCCCEEEEEcC----CHHHHHHHHHHHHHHHh
Confidence 87655443332 3578999865 77888999988887754
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=2.5e-05 Score=85.41 Aligned_cols=222 Identities=9% Similarity=0.042 Sum_probs=136.0
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCC--CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCccccccc---Cchhhhc----
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPD--SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQ---SLNAPVS---- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~--~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iD---pi~~ia~---- 90 (764)
.|.++..++...|... +.||+++ .+.+|+++|+++|++. +-+++-+.++.++|.+= +++++++
T Consensus 134 ~~~~~~~~~~~~g~~~---~~v~~~~~~~~~~d~~~l~~~l~~~-----~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~ 205 (406)
T 1xi9_A 134 SYPPYTGLVKFYGGKP---VEYRTIEEEDWQPDIDDIRKKITDR-----TKAIAVINPNNPTGALYDKKTLEEILNIAGE 205 (406)
T ss_dssp CCHHHHHHHHHTTCEE---EEEEEEGGGTSEECHHHHHHHCCTT-----EEEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHcCCEE---EEeecCCCcCCcCCHHHHHHhhCcC-----ceEEEEECCCCCCCCCcCHHHHHHHHHHHHH
Confidence 5678889999999876 8899874 5789999999999752 22444556788999873 4666664
Q ss_pred -CCCceeccccccc-c------------ce-ee-eecCCCccc-ccccccccc--CCc----cc----------CCCCcc
Q psy13453 91 -NGPLKVGGVLRRV-Y------------SS-CL-VPRGQKSLR-TTVLFHFLF--QHW----QI----------PLGRRF 137 (764)
Q Consensus 91 -~~wlHVDa~l~~~-y------------~s-~l-l~rd~~~l~-~~~s~~~d~--~d~----tl----------e~SRr~ 137 (764)
++|+++|.+.... + .. .+ +..-.+.+- ..+...+-+ .+. .+ .++ .
T Consensus 206 ~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~l~~~l~~~~~~~~~--~ 283 (406)
T 1xi9_A 206 YEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLC--P 283 (406)
T ss_dssp HTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHTCC--S
T ss_pred cCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccCCCccEEEEEEEecCchhHHHHHHHHHHHHHhhcC--C
Confidence 8999999864211 0 00 11 111111111 000000001 110 00 011 1
Q ss_pred cHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEE-EeeccccccccccccCccCCccH
Q psy13453 138 RALKLWMTLRSY--GLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCF-RLKVRFWDKLDNLFGTISFGDND 214 (764)
Q Consensus 138 ~ALklWatL~~l--G~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~F-ry~P~~~~~~~~~~~~~~~~~d~ 214 (764)
..+..++....+ +.+++.++.++..+..+++.+.|++.|+++++ .|+-+.++| ++. ... +.+
T Consensus 284 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~-~~~------------~~~- 348 (406)
T 1xi9_A 284 NTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGISTT-KPQGAFYIFPKIE-VGP------------WKN- 348 (406)
T ss_dssp CSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTSTTEECC-CCCBSSEECCEEC-SCS------------CSS-
T ss_pred CHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCeee-cCCeeEEEEEecC-ccC------------CCC-
Confidence 223333333333 56678888899999999999999999899875 455555555 332 100 011
Q ss_pred HHHHHHHHHH-hcCcEEEEeceeC--CeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 215 LNKAVYDRII-ARKVIYIVKGSFQ--DRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 215 ~n~~L~~~L~-~~G~~~vs~t~l~--g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
..++.++|. +.|..+.....+. +..++|+++. +++++++.+++.|.++.+++
T Consensus 349 -~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~---~~~~~i~~~~~~l~~~l~~~ 403 (406)
T 1xi9_A 349 -DKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL---PPIEILEEAMDRFEKFMKER 403 (406)
T ss_dssp -HHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC---SCHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEec---CCHHHHHHHHHHHHHHHHHH
Confidence 246777876 7787655443332 2568999886 78999999999998887654
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=4.6e-05 Score=82.96 Aligned_cols=221 Identities=11% Similarity=0.087 Sum_probs=135.5
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccCch---hhhc-----
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQSLN---APVS----- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDpi~---~ia~----- 90 (764)
.|.++..++...|... +.+|+++++ +|+++|+++|++. ++-++ +-..+..++|.+=|.+ ++++
T Consensus 124 ~y~~~~~~~~~~g~~~---~~~~~~~~~-~d~~~l~~~l~~~----~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~ 195 (397)
T 2zyj_A 124 SYMGAIQAFRLQGPRF---LTVPAGEEG-PDLDALEEVLKRE----RPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMER 195 (397)
T ss_dssp CCHHHHHHHHTTCCEE---EEEEEETTE-ECHHHHHHHHHHC----CCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHcCCEE---EecCcCCCC-CCHHHHHHHHhhc----CCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHc
Confidence 4567888888888766 889998765 9999999999862 12243 5567788999986655 4443
Q ss_pred CCCceeccccccc-cc-----e-------------eeeecCCCccccccccccccC-------------CcccCCCCccc
Q psy13453 91 NGPLKVGGVLRRV-YS-----S-------------CLVPRGQKSLRTTVLFHFLFQ-------------HWQIPLGRRFR 138 (764)
Q Consensus 91 ~~wlHVDa~l~~~-y~-----s-------------~ll~rd~~~l~~~~s~~~d~~-------------d~tle~SRr~~ 138 (764)
++++++|...... +. + +++..-.+.+-.-+...+-+. .++. ...
T Consensus 196 ~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~----~~~ 271 (397)
T 2zyj_A 196 GLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPGLRVAFAVAHPEALQKLVQAKQGADL----HTP 271 (397)
T ss_dssp TCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGGGCCEEEECCHHHHHHHHHHHHHHHS----SCC
T ss_pred CCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEecccccccccceeEEEecCHHHHHHHHHHHHhhcC----CCC
Confidence 8999999965321 10 0 111111111110000000000 0011 113
Q ss_pred HHHHHHHHHHc--cH-HHHHHHHHHHHHHHHHHHHHHhc-CC-CeEEeCCCCceeEEEEeeccccccccccccCccCCcc
Q psy13453 139 ALKLWMTLRSY--GL-KGLQAYLRKHISLAKKFADLVEQ-DD-RFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDN 213 (764)
Q Consensus 139 ALklWatL~~l--G~-eGy~~~i~~~i~lA~~l~~~I~~-~p-~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d 213 (764)
.+..+++...+ +. +.+.++.++..+..+++.+.|++ .| ++++..+.....+.+++.. +.+
T Consensus 272 ~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~~g~~~~~~~~~---------------~~~ 336 (397)
T 2zyj_A 272 MLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMFVWMELPK---------------GLS 336 (397)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCSBSSEEEEECST---------------TCC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCCccEEEEEEcCC---------------CCC
Confidence 33344443333 32 45677777778889999999987 57 6887654444556665421 111
Q ss_pred HHHHHHHHHHHhcCcEEEEecee----CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy13453 214 DLNKAVYDRIIARKVIYIVKGSF----QDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVL 271 (764)
Q Consensus 214 ~~n~~L~~~L~~~G~~~vs~t~l----~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~ 271 (764)
..++.++|.++|..+...... .+..++|+++..+ ++++++++++.|+++.++++
T Consensus 337 --~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~--~~~~i~~~~~~l~~~l~~~~ 394 (397)
T 2zyj_A 337 --AEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYATL--DREGIAEGVRRLGRALKGLL 394 (397)
T ss_dssp --HHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECSSS--CHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcCCC--CHHHHHHHHHHHHHHHHHHH
Confidence 247888888898766544333 1457899998775 89999999999999887764
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00017 Score=79.56 Aligned_cols=234 Identities=8% Similarity=-0.012 Sum_probs=134.5
Q ss_pred eeeeHHHHHh-hcCCCCCCeEEecCCC--CCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccC---chhhhc--
Q psy13453 20 LIYESFKATH-SLSGTPDQVRLSGLPD--SEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQS---LNAPVS-- 90 (764)
Q Consensus 20 ~~YSv~KAa~-~LGl~~~~v~~Vpvd~--~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDp---i~~ia~-- 90 (764)
.|.++..++. ..|... +.+|+++ .+++|+++|+++|++....+..+-+ +-+.++.++|.+=| +.++++
T Consensus 144 ~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~ 220 (435)
T 3piu_A 144 YYPGFDRDLKWRTGVEI---VPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFV 220 (435)
T ss_dssp CCTTHHHHTTTTTCCEE---EEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHH
T ss_pred ccccHHHHHHHhcCCEE---EEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHH
Confidence 4557777777 678766 8999985 5679999999999986655544544 56668889999844 455543
Q ss_pred ---CCCceecccccc------ccce--------------------eeeecCCCccc-cccccccccC-Cccc----C-CC
Q psy13453 91 ---NGPLKVGGVLRR------VYSS--------------------CLVPRGQKSLR-TTVLFHFLFQ-HWQI----P-LG 134 (764)
Q Consensus 91 ---~~wlHVDa~l~~------~y~s--------------------~ll~rd~~~l~-~~~s~~~d~~-d~tl----e-~S 134 (764)
++++++|.+... .+.+ +++..-.+.+- .-+...+-.. +..+ . ..
T Consensus 221 ~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~ 300 (435)
T 3piu_A 221 EDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS 300 (435)
T ss_dssp HHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHG
T ss_pred HHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHHHh
Confidence 899999996421 1111 11111111110 0000000000 0000 0 00
Q ss_pred C--cccHHHHHHHHHHcc-----HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccC
Q psy13453 135 R--RFRALKLWMTLRSYG-----LKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGT 207 (764)
Q Consensus 135 R--r~~ALklWatL~~lG-----~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~ 207 (764)
+ ....+..++....+. .+.+.++.++..+..+++.+.+++. +++++.+..-..+.+++.. ...
T Consensus 301 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~l~~-~~~-------- 370 (435)
T 3piu_A 301 SFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-GISCLNGNAGLFCWVDMRH-LLR-------- 370 (435)
T ss_dssp GGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCEECCCCSSSEEEEECGG-GSS--------
T ss_pred hcCCCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCCeeEEEEEEccc-ccc--------
Confidence 0 112333333222222 2345667777888899999999986 8887654332455555421 100
Q ss_pred ccCCccHHHHHHHHHHHhc-CcEEEEecee--CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 208 ISFGDNDLNKAVYDRIIAR-KVIYIVKGSF--QDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 208 ~~~~~d~~n~~L~~~L~~~-G~~~vs~t~l--~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
.....-..++.++|.++ |..+...... .+..++|+++... ++++++.+++.|+++.+++
T Consensus 371 --~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~--~~e~i~~~l~~l~~~l~~~ 432 (435)
T 3piu_A 371 --SNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANL--PERTLDLAMQRLKAFVGEY 432 (435)
T ss_dssp --SSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSS--CHHHHHHHHHHHHHHHHHH
T ss_pred --cCCchhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEeeCC--CHHHHHHHHHHHHHHHHHH
Confidence 01111235788888777 8755443332 3567899987443 8999999999999887665
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=98.10 E-value=4.7e-05 Score=82.15 Aligned_cols=211 Identities=10% Similarity=-0.014 Sum_probs=134.0
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCc
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPL 94 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wl 94 (764)
.|.++..++..+|... +.+|.++++.+|+++|+++|++. ++-+++.+.++.++|.+-|++++.+ ++++
T Consensus 125 ~y~~~~~~~~~~g~~~---~~v~~~~~~~~d~~~l~~~i~~~----~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~l 197 (369)
T 3cq5_A 125 SYSMHPILAKGTHTEF---IAVSRGADFRIDMDVALEEIRAK----QPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIV 197 (369)
T ss_dssp SCTHHHHHHHHTTCEE---EEEECCTTSSCCHHHHHHHHHHH----CCSEEEEESSCTTTCCCCCHHHHHHHHHHCSSEE
T ss_pred ChHHHHHHHHHcCCEE---EEecCCcCCCCCHHHHHHHhhcc----CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEE
Confidence 4667888999999876 89999988899999999999862 1235545778899999999888765 6889
Q ss_pred eecccccccc--ce------------eeeecCCCccc-ccccccc-----c----cCCcccCCCCcccHHHHHHHHHHcc
Q psy13453 95 KVGGVLRRVY--SS------------CLVPRGQKSLR-TTVLFHF-----L----FQHWQIPLGRRFRALKLWMTLRSYG 150 (764)
Q Consensus 95 HVDa~l~~~y--~s------------~ll~rd~~~l~-~~~s~~~-----d----~~d~tle~SRr~~ALklWatL~~lG 150 (764)
++|....... .+ +++..-.+.+- ..+...+ + +....... ....+..+++...+-
T Consensus 198 i~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~a~~~~l~ 275 (369)
T 3cq5_A 198 IVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANPAFIDAVMLVRLPY--HLSALSQAAAIVALR 275 (369)
T ss_dssp EEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEECTHHHHHHHTTSCTT--CSCHHHHHHHHHHHH
T ss_pred EEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeCHHHHHHHHHcCCCC--CCCHHHHHHHHHHhc
Confidence 9999642110 01 11111111110 0000000 0 00000001 244555555554442
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcE
Q psy13453 151 -LKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVI 229 (764)
Q Consensus 151 -~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~ 229 (764)
.+.+.++.++..+.++++.+.+++ .++++. ++..+.+.|++. . + ..++.++|.+.|..
T Consensus 276 ~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~-~~~~~~~~~~~~-~--------------~----~~~l~~~l~~~gi~ 334 (369)
T 3cq5_A 276 HSADTLGTVEKLSVERVRVAARLEE-LGYAVV-PSESNFVFFGDF-S--------------D----QHAAWQAFLDRGVL 334 (369)
T ss_dssp THHHHHTHHHHHHHHHHHHHHHHHH-HTCEEE-CCSSSEEEEECC-S--------------S----HHHHHHHHHHTTEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh-CCCEEC-CCCCeEEEEECC-C--------------C----HHHHHHHHHHCCEE
Confidence 345677888888999999999988 488876 556666777542 0 1 14677888888864
Q ss_pred EEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13453 230 YIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 230 ~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~ 267 (764)
+... ....++|+++. ++++++.+++.|+++.
T Consensus 335 v~~~---~~~~~iRis~~----~~~~i~~~~~~l~~~~ 365 (369)
T 3cq5_A 335 IRDV---GIAGHLRTTIG----VPEENDAFLDAAAEII 365 (369)
T ss_dssp CBCC---SCTTEEEEECC----CHHHHHHHHHHHHHHH
T ss_pred EEEC---CCCCeEEEEeC----CHHHHHHHHHHHHHHH
Confidence 4322 23468999876 6899999999988764
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=98.09 E-value=2.4e-05 Score=86.72 Aligned_cols=149 Identities=13% Similarity=0.013 Sum_probs=104.9
Q ss_pred ccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCc
Q psy13453 552 FSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631 (764)
Q Consensus 552 ~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~ 631 (764)
..|.......++-+.+.+|+.+.-+.+-. .+.-..++|.||++|...++.+..+. .+
T Consensus 66 ~~Y~~~~G~~~lr~aia~~~~~~~~~~~~-----~~~i~i~~t~G~~~al~~~~~~l~~~-----------------~~- 122 (405)
T 3k7y_A 66 KPYLLGNGTEDFSTLTQNLIFGNNSKYIE-----DKKICTIQCIGGTGAIFVLLEFLKML-----------------NV- 122 (405)
T ss_dssp CCCCTTSSCHHHHHHHHHHHHCSSCTTTT-----TTCEEEEEEEHHHHHHHHHHHHHHTT-----------------TC-
T ss_pred CCCCCCCCcHHHHHHHHHHHcCCCCcccc-----ccceEEEEcCchHHHHHHHHHHHHhc-----------------CC-
Confidence 34555556677777788887544333211 01113689999999887766543211 02
Q ss_pred eEEEecCCcchhHHHHHHhCCCceEEEec-CC-CCcccHHHHHHHHHHhhhcCCCceEEEEee-ccCCcccc---ccHHH
Q psy13453 632 LVAYTSDQSNSSVEKSAIIGDVPVRQLRS-DD-NGVLRGDALLTAVKEDLAKGLIPCCLIATL-GTTGTCAF---DNLEE 705 (764)
Q Consensus 632 ~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~-d~-~g~md~~~Le~~I~~~~~~G~~p~~Vvata-GTT~~Gai---Dpl~e 705 (764)
-.|++.+=+......+++..|.+++.+|+ ++ ++.+|+++|++++++.. .+-+|+.+. .++.||.+ +.+++
T Consensus 123 d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~----~~~~i~l~~~~~NPTG~~~s~~~~~~ 198 (405)
T 3k7y_A 123 ETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNIP----NGSSVILQISCYNPCSVNIEEKYFDE 198 (405)
T ss_dssp CEEEEESSCCHHHHHHHHTTTCEEEEECCEETTTTEECHHHHHHHHHHSC----SSCEEEECCSSCTTTCCCCCHHHHHH
T ss_pred CEEEEeCCCCHhHHHHHHHcCCeEEEEeccccccCCcCHHHHHHHHHhCC----CCeEEEEeCCCCCCCCCCCCHHHHHH
Confidence 24677777777888888999999999998 43 58999999999997531 123555555 47999988 56777
Q ss_pred HHHHHHhcCCEEEEeccccccc
Q psy13453 706 LGPICQEYNIWLHVDAAYAGSA 727 (764)
Q Consensus 706 Ia~i~~~~glwLHVDaA~Gg~~ 727 (764)
|+++|++|++|+.+|-+|....
T Consensus 199 l~~~~~~~~~~vi~De~Y~~l~ 220 (405)
T 3k7y_A 199 IIEIVLHKKHVIIFDIAYQGFG 220 (405)
T ss_dssp HHHHHHHHCCEEEEEESCTTTS
T ss_pred HHHHHHHCCeEEEEecCccccc
Confidence 8899999999999999998754
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=1.7e-05 Score=86.00 Aligned_cols=221 Identities=11% Similarity=0.056 Sum_probs=132.8
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCC--CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCccccccc---Cchhhhc----
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPD--SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQ---SLNAPVS---- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~--~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iD---pi~~ia~---- 90 (764)
.|.++.++++.+|... +.||+++ ++.+|+++|+++|++. +-+++-+.++.++|.+= +++++++
T Consensus 120 ~~~~~~~~~~~~g~~~---~~v~~~~~~~~~~d~~~l~~~l~~~-----~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~ 191 (389)
T 1gd9_A 120 AFVSYAPAVILAGGKP---VEVPTYEEDEFRLNVDELKKYVTDK-----TRALIINSPCNPTGAVLTKKDLEEIADFVVE 191 (389)
T ss_dssp CCTTHHHHHHHHTCEE---EEEECCGGGTTCCCHHHHHHHCCTT-----EEEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHCCCEE---EEeccCCccCCCCCHHHHHHhcCcC-----ceEEEEECCCCCCCcCCCHHHHHHHHHHHHH
Confidence 5778899999999876 9999985 5789999999999642 22444567888999884 4666664
Q ss_pred -CCCceeccccccc-c--------ce--------eeeecCCCccc-cccccccccC---------CcccCCCCcccHHHH
Q psy13453 91 -NGPLKVGGVLRRV-Y--------SS--------CLVPRGQKSLR-TTVLFHFLFQ---------HWQIPLGRRFRALKL 142 (764)
Q Consensus 91 -~~wlHVDa~l~~~-y--------~s--------~ll~rd~~~l~-~~~s~~~d~~---------d~tle~SRr~~ALkl 142 (764)
++++++|...... + .. +++..-.+.+- ..+...+-+. ......+-....+..
T Consensus 192 ~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 271 (389)
T 1gd9_A 192 HDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQ 271 (389)
T ss_dssp TTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHTTTTCSCCHHHH
T ss_pred cCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccceEEEEECHHHHHHHHHHHhhhccCCCHHHH
Confidence 8899999854211 0 00 11111111110 0000000000 000000112233333
Q ss_pred HHHHHHc--cHH--HHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCcee-EEEEeeccccccccccccCccCCccHHHH
Q psy13453 143 WMTLRSY--GLK--GLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGL-VCFRLKVRFWDKLDNLFGTISFGDNDLNK 217 (764)
Q Consensus 143 WatL~~l--G~e--Gy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~i-V~Fry~P~~~~~~~~~~~~~~~~~d~~n~ 217 (764)
+++...+ +.+ .+.++.++..+.++++.+.|++. +++++. |+-+. +.+++.+. +.+ ..
T Consensus 272 ~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~~~--------------~~~--~~ 333 (389)
T 1gd9_A 272 YAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM-GLPTVK-PKGAFYIFPRIRDT--------------GLT--SK 333 (389)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCCC-CCBTTEECCBCGGG--------------TCC--HH
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc-CCeecC-CCeeeEEEEeccCC--------------CCC--HH
Confidence 3333333 455 78888889999999999999987 787654 44443 33333210 111 24
Q ss_pred HHHHHHH-hcCcEEEEecee--CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 218 AVYDRII-ARKVIYIVKGSF--QDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 218 ~L~~~L~-~~G~~~vs~t~l--~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
++.++|. +.|..+...... .+..++|+++.+ ++++++.+++.|+++.++
T Consensus 334 ~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~---~~~~i~~~l~~l~~~~~~ 385 (389)
T 1gd9_A 334 KFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT---AYEKLEEAMDRMERVLKE 385 (389)
T ss_dssp HHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS---CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC---CHHHHHHHHHHHHHHHHh
Confidence 6788887 788765544322 235689999774 789999999999887654
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.08 E-value=9.5e-06 Score=88.29 Aligned_cols=221 Identities=14% Similarity=0.053 Sum_probs=130.1
Q ss_pred HHHHhhcCCCCCCeEEecCC-CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCceecc
Q psy13453 25 FKATHSLSGTPDQVRLSGLP-DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKVGG 98 (764)
Q Consensus 25 ~KAa~~LGl~~~~v~~Vpvd-~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHVDa 98 (764)
.+++...|... ..+.++++ +++.+|+++|+++|++. ++-+++.+.+. .|.+.|++++.+ ++++++|+
T Consensus 126 ~~~~~~~g~~~-~~~~~~~~~~~~~~d~~~l~~~l~~~----~~~~v~~~~p~--~~~~~~l~~i~~l~~~~~~~li~De 198 (407)
T 2dkj_A 126 GSRVNFSGKLY-KVVSYGVRPDTELIDLEEVRRLALEH----RPKVIVAGASA--YPRFWDFKAFREIADEVGAYLVVDM 198 (407)
T ss_dssp TCTTSHHHHHS-EEEEECCCTTTSSCCHHHHHHHHHHH----CCSEEEECCSS--CCSCCCHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHhcCceE-EEEecCCCcccCccCHHHHHHHHhhc----CCeEEEEeccc--cCCCCCHHHHHHHHHHcCCEEEEEc
Confidence 35556666544 11334445 37899999999999853 12244333343 357888888876 89999999
Q ss_pred cccc--c----------cceeeeecCCCcccc---cccc-c-cc-------cCCcccCCCCcccHH-HHHHHHHHccHHH
Q psy13453 99 VLRR--V----------YSSCLVPRGQKSLRT---TVLF-H-FL-------FQHWQIPLGRRFRAL-KLWMTLRSYGLKG 153 (764)
Q Consensus 99 ~l~~--~----------y~s~ll~rd~~~l~~---~~s~-~-~d-------~~d~tle~SRr~~AL-klWatL~~lG~eG 153 (764)
+... . ...+++..-.+.+.+ .+-. . .+ .......++-....+ .+.+++..+..++
T Consensus 199 a~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~ 278 (407)
T 2dkj_A 199 AHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRGGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPE 278 (407)
T ss_dssp TTTHHHHHTTCSCCCTTTCSEEEEESSGGGCCCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHH
T ss_pred cccccccccCccCCccccccEEEEeccccCCCCCceEEEECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhh
Confidence 6321 0 001111111111110 0000 0 00 000111112111122 4566677665678
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEeCC-CCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEE
Q psy13453 154 LQAYLRKHISLAKKFADLVEQDDRFELVCP-PSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIV 232 (764)
Q Consensus 154 y~~~i~~~i~lA~~l~~~I~~~p~~ell~~-P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs 232 (764)
+.++.++..++++++.+.|++. +++++.+ ...+.++|++... +.+ ..++.+.|.+.|.....
T Consensus 279 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~--------------~~~--~~~~~~~l~~~gi~v~~ 341 (407)
T 2dkj_A 279 FKEYSRLVVENAKRLAEELARR-GYRIVTGGTDNHLFLVDLRPK--------------GLT--GKEAEERLDAVGITVNK 341 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGG--------------TCC--HHHHHHHHHHTTEECEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CceeecCCCCceEEEEECccc--------------CCC--HHHHHHHHHHcCceecC
Confidence 9999999999999999999998 8998864 4566777766311 011 24677888888875543
Q ss_pred ece------eCCeeEEEEeccCC---CCCHHHHHHHHHHHHHHHHH
Q psy13453 233 KGS------FQDRLFMRFAICSS---QTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 233 ~t~------l~g~~~LRi~v~np---~Tt~e~i~~~l~~l~~~~~~ 269 (764)
... .....++|+++..+ .+++++++.+++.|+++.++
T Consensus 342 ~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 342 NAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp CCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred CcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 321 11245799987543 47899999999999888654
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=98.08 E-value=2e-05 Score=86.99 Aligned_cols=232 Identities=14% Similarity=0.098 Sum_probs=137.4
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhC--C-CCcEE-EEeeCCcccccccCc---hhhhc--
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKS--F-LCPMC-SGYCGRTLHQDIQSL---NAPVS-- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~--G-~~p~~-VatAGTT~~G~iDpi---~~ia~-- 90 (764)
.+.++.+++..+|... +.||+++++ +|+++|+++|++..++ | ++-++ +-+.+..++|.+=|. +++++
T Consensus 142 ~y~~~~~~~~~~g~~~---~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~ 217 (425)
T 1vp4_A 142 AYLGAINAFRQYLANF---VVVPLEDDG-MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIA 217 (425)
T ss_dssp CCHHHHHHHHTTTCEE---EEEEEETTE-ECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHcCCEE---EEeccCCCC-CCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHH
Confidence 4568889999988866 889998765 9999999999873221 1 12243 456788899998654 44443
Q ss_pred ---CCCceeccccccc-c-----ce----------eeeecCCCccccccccccccCCc---------ccCCCCcccHHHH
Q psy13453 91 ---NGPLKVGGVLRRV-Y-----SS----------CLVPRGQKSLRTTVLFHFLFQHW---------QIPLGRRFRALKL 142 (764)
Q Consensus 91 ---~~wlHVDa~l~~~-y-----~s----------~ll~rd~~~l~~~~s~~~d~~d~---------tle~SRr~~ALkl 142 (764)
++++++|.+.... | .+ +++..-.+.+-.-+...+-+... ....+-....+..
T Consensus 218 ~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 297 (425)
T 1vp4_A 218 EKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLAPGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITH 297 (425)
T ss_dssp HHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTCGGGCEEEEECCHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccccccceEEEeeCHHHHHHHHHHhhhhcCCCCHHHH
Confidence 8899999964221 1 00 11111111111000000000000 0000112244555
Q ss_pred HHHHHHcc----HHHHHHHHHHHHHHHHHHHHHHhcC-C---CeEEeCCCCceeEEEEeeccccccccccccCccCCccH
Q psy13453 143 WMTLRSYG----LKGLQAYLRKHISLAKKFADLVEQD-D---RFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDND 214 (764)
Q Consensus 143 WatL~~lG----~eGy~~~i~~~i~lA~~l~~~I~~~-p---~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~ 214 (764)
+++...+. .+.+.++.++..+.++++.+.|++. | +++++.+.....+.+++. .+. +.
T Consensus 298 ~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g~~~~~~~~-~~~------------~~-- 362 (425)
T 1vp4_A 298 RLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLP-EGF------------DT-- 362 (425)
T ss_dssp HHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECC-TTC------------CT--
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccEEEEEEcC-CCC------------CH--
Confidence 55555542 3445666666778889999999874 5 688765444445666653 110 11
Q ss_pred HHHHHHHHHHhcCcEEEEecee----CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHccC
Q psy13453 215 LNKAVYDRIIARKVIYIVKGSF----QDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLRGK 274 (764)
Q Consensus 215 ~n~~L~~~L~~~G~~~vs~t~l----~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~~~ 274 (764)
.++.++|.++|..+...... .+..++|+++..+ ++++++.+++.|+++.+++.++.
T Consensus 363 --~~l~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~--~~e~i~~~l~~l~~~l~~~~~~~ 422 (425)
T 1vp4_A 363 --WEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLP--PDEKIVEGIKRLREVVLEYGKEK 422 (425)
T ss_dssp --TTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSS--CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHCCCEEECchhhcCCCCCCCeEEEEeCCC--CHHHHHHHHHHHHHHHHHHHhhc
Confidence 24677777788765544333 2357899998764 89999999999999887776543
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=1.3e-05 Score=86.78 Aligned_cols=219 Identities=11% Similarity=0.046 Sum_probs=132.1
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCC-CcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCC
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDS-EWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGP 93 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~-~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~w 93 (764)
.|.++.++++..|+.. +.||++++ +.+|+++|+++|++. +-+++. +.++|.+.|++++++ +++
T Consensus 88 ~~~~~~~~~~~~g~~~---~~v~~~~~~~~~d~~~l~~~l~~~-----~~~v~~---~~~~G~~~~~~~i~~l~~~~~~~ 156 (393)
T 1mdo_A 88 TWVSTLNMIVLLGANP---VMVDVDRDTLMVTPEHIEAAITPQ-----TKAIIP---VHYAGAPADLDAIYALGERYGIP 156 (393)
T ss_dssp SCHHHHHHHHHTTCEE---EEECBCTTTCCBCHHHHHHHCCTT-----EEEECC---BCGGGCCCCHHHHHHHHHHHTCC
T ss_pred ccHhHHHHHHHCCCEE---EEEeccCCcCCCCHHHHHHhcCCC-----ceEEEE---eCCCCCcCCHHHHHHHHHHcCCe
Confidence 5788899999999876 99999864 789999999999742 112322 237899999999876 899
Q ss_pred ceeccccccc--c-----c--------------------eeeeecCCCccccccccccccC-------------CcccC-
Q psy13453 94 LKVGGVLRRV--Y-----S--------------------SCLVPRGQKSLRTTVLFHFLFQ-------------HWQIP- 132 (764)
Q Consensus 94 lHVDa~l~~~--y-----~--------------------s~ll~rd~~~l~~~~s~~~d~~-------------d~tle- 132 (764)
+++|++.... + + ++++.++++.... +......+ .+..+
T Consensus 157 li~D~a~~~g~~~~~~~~~~~d~~~~S~~k~K~l~~~~~g~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (393)
T 1mdo_A 157 VIEDAAHATGTSYKGRHIGARGTAIFSFHAIKNITCAEGGIVVTDNPQFADK-LRSLKFHGLGVDAWDRQSGGRAPQAEV 235 (393)
T ss_dssp BCEECTTCTTCEETTEETTSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHH-HHHHTBTTEECC-----------CCEE
T ss_pred EEEECccccCCeECCeecCCCCeEEEeCCCCCccccccceEEEeCCHHHHHH-HHHHHhcCCcccchhhhcccccccccc
Confidence 9999964210 1 1 1222211110000 00000000 01111
Q ss_pred ---CC-CcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC------CceeEEEEeecccccccc
Q psy13453 133 ---LG-RRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPP------SMGLVCFRLKVRFWDKLD 202 (764)
Q Consensus 133 ---~S-Rr~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P------~l~iV~Fry~P~~~~~~~ 202 (764)
|. -+...+...+.+. ..+++++.+++..++++++.+.|++.+ +++...| ...+++|++.++..
T Consensus 236 ~~~g~~~~~~~~~~a~~~~--~l~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~---- 308 (393)
T 1mdo_A 236 LAPGYKYNLPDLNAAIALA--QLQKLDALNARRAAIAAQYHQAMADLP-FQPLSLPSWEHIHAWHLFIIRVDEARC---- 308 (393)
T ss_dssp SSCCCBCCCCHHHHHHHHH--HHHTHHHHHHHHHHHHHHHHHHHHTSS-CEECCCCSSCEECCCSCEEEECCHHHH----
T ss_pred cccCccCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCC-cccccCCCCCCCceeEEEEEEeccccc----
Confidence 11 1234444333333 345688889999999999999999987 8887544 22356776531000
Q ss_pred ccccCccCCccHHHHHHHHHHHhcCcEEEEec-e---------------eC-----CeeEEEEeccCCCCCHHHHHHHHH
Q psy13453 203 NLFGTISFGDNDLNKAVYDRIIARKVIYIVKG-S---------------FQ-----DRLFMRFAICSSQTEESDVQLGWN 261 (764)
Q Consensus 203 ~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t-~---------------l~-----g~~~LRi~v~np~Tt~e~i~~~l~ 261 (764)
+.+ ..++.++|.+.|....... . +. +...+|++ ..+.+++++++.+++
T Consensus 309 --------~~~--~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~-~~~~~t~~~i~~~~~ 377 (393)
T 1mdo_A 309 --------GIT--RDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLP-LFPDMTESDFDRVIT 377 (393)
T ss_dssp --------SSC--HHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEEC-CCTTCCHHHHHHHHH
T ss_pred --------ccC--HHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEec-CCCCCCHHHHHHHHH
Confidence 011 2468888888887432211 0 00 12379996 566778999999999
Q ss_pred HHHHHHH
Q psy13453 262 EIRTATE 268 (764)
Q Consensus 262 ~l~~~~~ 268 (764)
.|+++.+
T Consensus 378 ~l~~~~~ 384 (393)
T 1mdo_A 378 ALHQIAG 384 (393)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9988753
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=7e-06 Score=90.12 Aligned_cols=221 Identities=8% Similarity=-0.067 Sum_probs=136.8
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCC--CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccc---cCchhhhc----
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPD--SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDI---QSLNAPVS---- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~--~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~i---Dpi~~ia~---- 90 (764)
.|.++.+++...|... +.||+++ ++.+ +++|+++|++. +-+++-+.++.++|.+ ++++++++
T Consensus 135 ~~~~~~~~~~~~g~~~---~~v~~~~~~~~~~-~~~l~~~l~~~-----~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~ 205 (409)
T 2gb3_A 135 FYANYNAFAKIAGVKL---IPVTRRMEEGFAI-PQNLESFINER-----TKGIVLSNPCNPTGVVYGKDEMRYLVEIAER 205 (409)
T ss_dssp CCTHHHHHHHHHTCEE---EEEECCGGGTSCC-CTTGGGGCCTT-----EEEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHcCCEE---EEeccCCCCCCcc-HHHHHHhhCcC-----CeEEEECCCCCCCCCCcCHHHHHHHHHHHHH
Confidence 5678889999999876 8999985 4566 89999888642 2244556788899987 45677665
Q ss_pred -CCCceeccccccc-c----cee---------eeecCCCccc-cccccccccCCc----------ccCCCCcccHHHHHH
Q psy13453 91 -NGPLKVGGVLRRV-Y----SSC---------LVPRGQKSLR-TTVLFHFLFQHW----------QIPLGRRFRALKLWM 144 (764)
Q Consensus 91 -~~wlHVDa~l~~~-y----~s~---------ll~rd~~~l~-~~~s~~~d~~d~----------tle~SRr~~ALklWa 144 (764)
++++++|.+.... + .+. ++..-.+.+- ..+...+-+... .-..+ ....+..++
T Consensus 206 ~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~a 284 (409)
T 2gb3_A 206 HGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMKLAQGRL-APPLLEQIG 284 (409)
T ss_dssp TTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHHHHHHHSC-CCCHHHHHH
T ss_pred cCCEEEEECcccccccCCCCCCccccCCCCEEEEecchhccCCccceEEEEEECcHHHHHHHHHHHhccC-CCCHHHHHH
Confidence 8999999964221 1 011 0100011110 000000000000 00011 233444444
Q ss_pred HHHHc--cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEE-EeeccccccccccccCccCCccHHHHHHHH
Q psy13453 145 TLRSY--GLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCF-RLKVRFWDKLDNLFGTISFGDNDLNKAVYD 221 (764)
Q Consensus 145 tL~~l--G~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~F-ry~P~~~~~~~~~~~~~~~~~d~~n~~L~~ 221 (764)
+...+ |.+++.++.++..+.++++.+.|++. +++++..|+-+.++| ++. + .+ ..++.+
T Consensus 285 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~--~--------------~~--~~~l~~ 345 (409)
T 2gb3_A 285 SVGLLNLDDSFFDFVRETYRERVETVLKKLEEH-GLKRFTKPSGAFYITAELP--V--------------ED--AEEFAR 345 (409)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCBCCCSBSSEEEEECS--S--------------SC--HHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHc-CceeeeCCCeeEEEEEEeC--C--------------CC--HHHHHH
Confidence 44444 78888999999999999999999987 887734455555554 331 0 11 246778
Q ss_pred HHHhc------CcEEEEecee-----CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHc
Q psy13453 222 RIIAR------KVIYIVKGSF-----QDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLR 272 (764)
Q Consensus 222 ~L~~~------G~~~vs~t~l-----~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~ 272 (764)
+|.++ |..+...... .+..++|+++. +++++++.+++.|+++.+++.+
T Consensus 346 ~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~---~~~e~i~~~~~~l~~~l~~~~~ 404 (409)
T 2gb3_A 346 WMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV---LEKDLLSRAIDVLMEGLKMFCS 404 (409)
T ss_dssp HHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC---SCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC---CCHHHHHHHHHHHHHHHHHhhh
Confidence 88876 7655443322 23578999876 7899999999999998877643
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.05 E-value=5.9e-05 Score=83.01 Aligned_cols=221 Identities=8% Similarity=-0.092 Sum_probs=135.2
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCC-CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccC---chhhhc-----
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLP-DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQS---LNAPVS----- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd-~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDp---i~~ia~----- 90 (764)
.|.++..++..+|... +.||++ +.+.+|+++|+++|++. ++-+++-+.++.++|.+=| +.++++
T Consensus 142 ~~~~~~~~~~~~g~~~---~~v~~~~~~~~~d~~~l~~~l~~~----~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~ 214 (437)
T 3g0t_A 142 GFNLNKLQCRILGQKF---ESFDLFEYRGEKLREKLESYLQTG----QFCSIIYSNPNNPTWQCMTDEELRIIGELATKH 214 (437)
T ss_dssp CCHHHHHHHHHHTCCC---EEEEGGGGCTTHHHHHHHHHHTTT----CCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHT
T ss_pred CcHhHHHHHHHcCCEE---EEEeecCCCCccCHHHHHHHHhcC----CceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHC
Confidence 5678899999999988 999996 45689999999999421 2334545677999999876 444443
Q ss_pred CCCceeccccccc-cc---ee------------------eeecCCCccc-ccccccc-----ccCC-c------c-----
Q psy13453 91 NGPLKVGGVLRRV-YS---SC------------------LVPRGQKSLR-TTVLFHF-----LFQH-W------Q----- 130 (764)
Q Consensus 91 ~~wlHVDa~l~~~-y~---s~------------------ll~rd~~~l~-~~~s~~~-----d~~d-~------t----- 130 (764)
++++++|.+.... +. ++ ++..-.+.+. ..+...+ +..+ . .
T Consensus 215 ~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~ 294 (437)
T 3g0t_A 215 DVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLR 294 (437)
T ss_dssp TCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGGCCEEEEECHHHHHCBCGGGHHHHSCSB
T ss_pred CcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCccceeEEEEECHHHhhhhhhcccccccccc
Confidence 8999999965211 10 00 0111111110 0000000 0001 0 0
Q ss_pred -----cCCC-----CcccHHHHHHHHHHccHHH-----HHHHHHHHHHHHHHHHHHHhcCCCeEEe------CC-CCcee
Q psy13453 131 -----IPLG-----RRFRALKLWMTLRSYGLKG-----LQAYLRKHISLAKKFADLVEQDDRFELV------CP-PSMGL 188 (764)
Q Consensus 131 -----le~S-----Rr~~ALklWatL~~lG~eG-----y~~~i~~~i~lA~~l~~~I~~~p~~ell------~~-P~l~i 188 (764)
+.-. -....+..+++...+.... +.++.++..+..+++.+.|++. +++++ .+ .....
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~ 373 (437)
T 3g0t_A 295 FGEALSSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDN-GFNIVYDKDGNEPLADGFY 373 (437)
T ss_dssp HHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT-TEEESSCEETTEECCSSSE
T ss_pred hhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCEEeccccCCCCCceeEE
Confidence 1110 1233455556555554433 7888899999999999999998 89887 34 33344
Q ss_pred EEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCC--eeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 189 VCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQD--RLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 189 V~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g--~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
+.+++. + .+ ..++.++|.++|..+........ ..++|+++.. .++++++.+++.|+++
T Consensus 374 ~~~~~~--~--------------~~--~~~l~~~L~~~gi~v~~~~~~~~~~~~~iRis~~~--~~~e~i~~~~~~l~~~ 433 (437)
T 3g0t_A 374 FTVGYK--G--------------MD--SSKLIEKFVRYGMCAITLKTTGSKRNEAMRICTSL--LPESQFPDLEKRLQML 433 (437)
T ss_dssp EEEEET--T--------------CC--HHHHHHHHHHTTEECEESTTTTCCCTTCEEEECSS--SCGGGHHHHHHHHHHH
T ss_pred EEEecC--C--------------CC--HHHHHHHHHHcCeEEeeccccCCCCCCEEEEEEec--CCHHHHHHHHHHHHHH
Confidence 445442 1 11 24688888888876554332211 2579998873 3789999999999887
Q ss_pred HH
Q psy13453 267 TE 268 (764)
Q Consensus 267 ~~ 268 (764)
.+
T Consensus 434 ~~ 435 (437)
T 3g0t_A 434 NA 435 (437)
T ss_dssp HH
T ss_pred Hh
Confidence 64
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=98.03 E-value=5.6e-05 Score=82.21 Aligned_cols=221 Identities=6% Similarity=-0.033 Sum_probs=133.5
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCc-EEEEeeCCcccccccCchhhhc-----CCC
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCP-MCSGYCGRTLHQDIQSLNAPVS-----NGP 93 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p-~~VatAGTT~~G~iDpi~~ia~-----~~w 93 (764)
.|.++.++++..|... +.+| .+|+++|+++|++....|..+ +++-+.++.++|.+.|++++.+ +++
T Consensus 138 ~~~~~~~~~~~~g~~~---~~~~-----~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~ 209 (401)
T 1fc4_A 138 NHASIIDGVRLCKAKR---YRYA-----NNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDAL 209 (401)
T ss_dssp CCHHHHHHHHTSCSEE---EEEC-----TTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEE
T ss_pred hHHHHHHHHHHcCCce---EEEC-----CCCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCE
Confidence 5668889999988766 6666 358999999998754433234 4456778899999999999876 889
Q ss_pred ceeccccc-cc-c-ce--------------eeeecCCCccccc---cc-cccc----c---C-CcccCCCCcccHHHHHH
Q psy13453 94 LKVGGVLR-RV-Y-SS--------------CLVPRGQKSLRTT---VL-FHFL----F---Q-HWQIPLGRRFRALKLWM 144 (764)
Q Consensus 94 lHVDa~l~-~~-y-~s--------------~ll~rd~~~l~~~---~s-~~~d----~---~-d~tle~SRr~~ALklWa 144 (764)
+++|.+.. .. + .+ +++..-.+.+... +- ...+ + . .+...+ ....+..++
T Consensus 210 li~De~~~~g~~~~~g~~~~~~~~~~~~~di~~~s~sK~~~~~~gG~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~a 287 (401)
T 1fc4_A 210 VMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSN--SLAPAIVAA 287 (401)
T ss_dssp EEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSCEEEEECHHHHHHHHHHCHHHHHSC--CCCHHHHHH
T ss_pred EEEECcccccccCCCCCccHHHcCCCcCCcEEEecchhhccCCCCEEEEcCHHHHHHHHHhCcCceeCC--CCCHHHHHH
Confidence 99999752 11 1 00 0100111111000 00 0000 0 0 011111 222333333
Q ss_pred HHHHccH-HHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHH
Q psy13453 145 TLRSYGL-KGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRI 223 (764)
Q Consensus 145 tL~~lG~-eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L 223 (764)
.+..+.. +...++.++..++++++.+.|++. +++++ ++..+++.|++.. ..-..++.++|
T Consensus 288 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~-----------------~~~~~~l~~~l 348 (401)
T 1fc4_A 288 SIKVLEMVEAGSELRDRLWANARQFREQMSAA-GFTLA-GADHAIIPVMLGD-----------------AVVAQKFAREL 348 (401)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT-TCCBC-CSSSSEEEEEEEC-----------------HHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCccc-CCCCCEEEEEcCC-----------------hHHHHHHHHHH
Confidence 3322211 114677888889999999999987 77766 5566777776531 01235788888
Q ss_pred HhcCcEEEEecee---CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 224 IARKVIYIVKGSF---QDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 224 ~~~G~~~vs~t~l---~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
.++|......... .+..++|+++. ..+++++++.+++.|+++.+++
T Consensus 349 ~~~gi~v~~~~~~~~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~~~~ 397 (401)
T 1fc4_A 349 QKEGIYVTGFFYPVVPKGQARIRTQMS-AAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp HHTTEECCEECTTSSCTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHCCcEEeeecCCCCCCCCceEEEEeC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 8888754333211 13468999754 4457999999999999887654
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=98.03 E-value=5.6e-05 Score=81.27 Aligned_cols=218 Identities=9% Similarity=-0.006 Sum_probs=130.9
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccC---chhhhc-----C
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQS---LNAPVS-----N 91 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDp---i~~ia~-----~ 91 (764)
.|.++..++...|... +.+|++++ +|+++|+++|++. +.+++-+.++.++|.+=| +.++++ +
T Consensus 114 ~~~~~~~~~~~~g~~~---~~~~~~~~--~d~~~l~~~l~~~-----~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~ 183 (377)
T 3fdb_A 114 AYPPFFHLLSATQREG---IFIDATGG--INLHDVEKGFQAG-----ARSILLCNPYNPLGMVFAPEWLNELCDLAHRYD 183 (377)
T ss_dssp CCTHHHHHHHHHTCCE---EEEECTTS--CCHHHHHHHHHTT-----CCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTT
T ss_pred CcHhHHHHHHHcCCEE---EEccCCCC--CCHHHHHHHhccC-----CCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 4677889999999877 99999976 9999999999863 235556667889999854 444533 8
Q ss_pred CCceecccccc-------c---cce-------eeeecCCCccc-ccccccccc-CCc-------ccC--CCCcccHHHHH
Q psy13453 92 GPLKVGGVLRR-------V---YSS-------CLVPRGQKSLR-TTVLFHFLF-QHW-------QIP--LGRRFRALKLW 143 (764)
Q Consensus 92 ~wlHVDa~l~~-------~---y~s-------~ll~rd~~~l~-~~~s~~~d~-~d~-------tle--~SRr~~ALklW 143 (764)
+++++|.+... . +.+ +++..-.+.+- ..+...+-. .+. ... .+-....+..+
T Consensus 184 ~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (377)
T 3fdb_A 184 ARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLI 263 (377)
T ss_dssp CEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGCCEEEECCSHHHHHHHHHSCHHHHCCCCHHHHH
T ss_pred CEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhccCcchhheEEEeCCHHHHHHHHHHHHhhcCCCCHHHHH
Confidence 99999986421 1 100 11111111110 000000000 000 000 00122334444
Q ss_pred HHHHH--ccHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEeCCCCceeEE-EEeeccccccccccccCccCCccHHHHHH
Q psy13453 144 MTLRS--YGLKGLQAYLRKHISLAKKFADLVEQ-DDRFELVCPPSMGLVC-FRLKVRFWDKLDNLFGTISFGDNDLNKAV 219 (764)
Q Consensus 144 atL~~--lG~eGy~~~i~~~i~lA~~l~~~I~~-~p~~ell~~P~l~iV~-Fry~P~~~~~~~~~~~~~~~~~d~~n~~L 219 (764)
++... .+.+.+.++.++..+..+++.+.+++ .|++++.. |+-+.+. +++... ..+ .++
T Consensus 264 a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~--------------~~~---~~~ 325 (377)
T 3fdb_A 264 AAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITP-MQATYLMWIDFRDT--------------TIE---GSP 325 (377)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECC-CSBCSEEEEECTTS--------------CCC---SCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEec-CCeeEEEEEECccc--------------CCC---HHH
Confidence 43333 34567888899999999999999998 89999864 4444443 443210 011 235
Q ss_pred HHHHHhc-CcEEEEeceeC--CeeEEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13453 220 YDRIIAR-KVIYIVKGSFQ--DRLFMRFAICSSQTEESDVQLGWNEIRTATE 268 (764)
Q Consensus 220 ~~~L~~~-G~~~vs~t~l~--g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~ 268 (764)
.++|.++ |..+....... +..++|+++.. ++++++.+++.|+++.+
T Consensus 326 ~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~---~~e~i~~~l~~l~~~l~ 374 (377)
T 3fdb_A 326 SEFFIEKAKVAMNDGAWFGEDGTGFCRLNFAT---SREVLEEAIDRMAKAVS 374 (377)
T ss_dssp HHHHHHHHCEECEEGGGGCGGGTTEEEEECCS---CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCEEecCChhccCCCCCEEEEEeCC---CHHHHHHHHHHHHHHHh
Confidence 5666655 76554333222 35789998773 78999999999887653
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00014 Score=80.03 Aligned_cols=231 Identities=11% Similarity=0.014 Sum_probs=132.4
Q ss_pred eeeHHHHH-hhcCCCCCCeEEecCC--CCCcccHHHHHHHHHHHhhCCCCcE-EEEeeCCcccccccC---chhhhc---
Q psy13453 21 IYESFKAT-HSLSGTPDQVRLSGLP--DSEWLAYLTLRTIYESFRKSFLCPM-CSGYCGRTLHQDIQS---LNAPVS--- 90 (764)
Q Consensus 21 ~YSv~KAa-~~LGl~~~~v~~Vpvd--~~~rmD~~aLe~~I~~~~~~G~~p~-~VatAGTT~~G~iDp---i~~ia~--- 90 (764)
|.++..++ ...|+.. +.||++ +++.+|+++|+++|++....+..+- ++-+-++.++|.+-| ++++++
T Consensus 142 y~~~~~~~~~~~g~~~---~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~ 218 (428)
T 1iay_A 142 YPAFNRDLRWRTGVQL---IPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTN 218 (428)
T ss_dssp CTTHHHHTTTTTCCEE---EEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred CcchHHHHHHhcCCEE---EEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHH
Confidence 33455544 4677765 889987 3568999999999987654443343 345668889999988 666654
Q ss_pred --CCCceecccccc------cccee------------------eeecCCCccc-cccccccccC-Ccc-------cCCCC
Q psy13453 91 --NGPLKVGGVLRR------VYSSC------------------LVPRGQKSLR-TTVLFHFLFQ-HWQ-------IPLGR 135 (764)
Q Consensus 91 --~~wlHVDa~l~~------~y~s~------------------ll~rd~~~l~-~~~s~~~d~~-d~t-------le~SR 135 (764)
++++++|.+... .+.++ ++..-.+.+- ..+...+-+. +.. ....-
T Consensus 219 ~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~~~~~ 298 (428)
T 1iay_A 219 QHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFG 298 (428)
T ss_dssp TTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHTTS
T ss_pred HCCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHHHhcc
Confidence 789999996432 11111 1111111110 0000000000 000 00000
Q ss_pred cccHHHHHHHHHHccH-----HHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccC
Q psy13453 136 RFRALKLWMTLRSYGL-----KGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISF 210 (764)
Q Consensus 136 r~~ALklWatL~~lG~-----eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~ 210 (764)
....+...++...+-. +.+.++.++..+..+++.+.|++. +++++.+..-+.+.+++... .. .
T Consensus 299 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~-~~----------~ 366 (428)
T 1iay_A 299 LVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-GIKCLKNNAGLFCWMDLRPL-LR----------E 366 (428)
T ss_dssp CCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCCCSSSSEEEEECGGG-CS----------S
T ss_pred cCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCCeeEEEEEechhh-cC----------C
Confidence 1233444444444432 356677788889999999999987 77754432444555655311 00 0
Q ss_pred CccHHHHHHHHHHHhc-CcEEEEeceeC--CeeEEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13453 211 GDNDLNKAVYDRIIAR-KVIYIVKGSFQ--DRLFMRFAICSSQTEESDVQLGWNEIRTATE 268 (764)
Q Consensus 211 ~~d~~n~~L~~~L~~~-G~~~vs~t~l~--g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~ 268 (764)
.......++.++|.++ |..+....... +..++|+++. .+++++++.+++.|+++.+
T Consensus 367 ~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~--~~~~e~i~~~~~~l~~~l~ 425 (428)
T 1iay_A 367 STFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFA--NMDDGTVDIALARIRRFVG 425 (428)
T ss_dssp SSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECS--SSCHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe--cCCHHHHHHHHHHHHHHHh
Confidence 0111235788899876 87655443332 2468999887 3689999999999988753
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=2.6e-05 Score=84.80 Aligned_cols=225 Identities=11% Similarity=0.015 Sum_probs=136.5
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCC-CC--CcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccC---chhhhc---
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLP-DS--EWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQS---LNAPVS--- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd-~~--~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDp---i~~ia~--- 90 (764)
.|.++..++..+|... +.+|++ ++ +++|+++|+++|++. ++-+++-+.++.++|.+-| ++++++
T Consensus 122 ~~~~~~~~~~~~g~~~---~~~~~~~~~g~~~~d~~~l~~~l~~~----~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~ 194 (399)
T 1c7n_A 122 VYYPFFMAIKNQERKI---IECELLEKDGYYTIDFQKLEKLSKDK----NNKALLFCSPHNPVGRVWKKDELQKIKDIVL 194 (399)
T ss_dssp CCTHHHHHHHTTTCEE---EECCCEEETTEEECCHHHHHHHHTCT----TEEEEEEESSBTTTTBCCCHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHcCCEE---EecccccCCCCEEEcHHHHHHHhccC----CCcEEEEcCCCCCCCcCcCHHHHHHHHHHHH
Confidence 5677888899888766 888886 43 479999999999731 1224445778999999987 666664
Q ss_pred --CCCceeccccccc-cc-----ee------------eeecCCCccc-cccccccccC-Cc---------ccCCC-Cccc
Q psy13453 91 --NGPLKVGGVLRRV-YS-----SC------------LVPRGQKSLR-TTVLFHFLFQ-HW---------QIPLG-RRFR 138 (764)
Q Consensus 91 --~~wlHVDa~l~~~-y~-----s~------------ll~rd~~~l~-~~~s~~~d~~-d~---------tle~S-Rr~~ 138 (764)
++++++|.+.... +. ++ ++..-.+.+- .-+...+-+. +. ....+ -...
T Consensus 195 ~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~ 274 (399)
T 1c7n_A 195 KSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFT 274 (399)
T ss_dssp HSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCC
T ss_pred HcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhccccchheEEEEECCHHHHHHHHHHHhhcccCCCC
Confidence 8899999864211 10 00 0100011110 0000000000 00 00000 0223
Q ss_pred HHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEeCCCCceeEE-EEeeccccccccccccCccCCccH
Q psy13453 139 ALKLWMTLRSY--GLKGLQAYLRKHISLAKKFADLVEQ-DDRFELVCPPSMGLVC-FRLKVRFWDKLDNLFGTISFGDND 214 (764)
Q Consensus 139 ALklWatL~~l--G~eGy~~~i~~~i~lA~~l~~~I~~-~p~~ell~~P~l~iV~-Fry~P~~~~~~~~~~~~~~~~~d~ 214 (764)
.+..+++...+ +.+.+.++.++..+..+++.+.|++ .|+++++ .|+-+.++ +++... +.+
T Consensus 275 ~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~~~~--------------~~~- 338 (399)
T 1c7n_A 275 TLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAP-LIEGTYLQWIDFRAL--------------KMD- 338 (399)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCC-CCSBSSEEEEECGGG--------------CCC-
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEe-cCCceEEEEEEcccC--------------CCC-
Confidence 44444443333 5677888888899999999999998 8898765 45555554 454210 011
Q ss_pred HHHHHHHHHH-hcCcEEEEeceeC--CeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy13453 215 LNKAVYDRII-ARKVIYIVKGSFQ--DRLFMRFAICSSQTEESDVQLGWNEIRTATEEVL 271 (764)
Q Consensus 215 ~n~~L~~~L~-~~G~~~vs~t~l~--g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~ 271 (764)
..++.++|. +.|..+....... +..++|+++..+ +++++++++.+.++.+++.
T Consensus 339 -~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~---~~~l~~~l~~l~~~l~~~~ 394 (399)
T 1c7n_A 339 -HKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAP---SSVIQESLERLNKALKDLK 394 (399)
T ss_dssp -HHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSC---HHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEeccC---HHHHHHHHHHHHHHHHHHH
Confidence 246788887 6787655433322 356899988764 7899999999998887764
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=98.01 E-value=6.4e-05 Score=80.63 Aligned_cols=212 Identities=7% Similarity=0.024 Sum_probs=132.9
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecC-CCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-------C
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGL-PDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-------N 91 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpv-d~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-------~ 91 (764)
.|.++..++...|... +.||+ ++++ +|+++|+++|+++ +-+++-+.++.++|.+=|++++.+ +
T Consensus 115 ~~~~~~~~~~~~g~~~---~~v~~~~~~~-~d~~~l~~~l~~~-----~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~ 185 (365)
T 3get_A 115 TFAMYEIYAKQCGAKC---YKTQSITHNL-DEFKKLYETHKDE-----IKLIFLCLPNNPLGECLDASEATEFIKGVNED 185 (365)
T ss_dssp CCTHHHHHHHHHTCEE---EECSSSSCCH-HHHHHHHHHTTTT-----EEEEEEESSCTTTCCCCCHHHHHHHHHTSCTT
T ss_pred ChHHHHHHHHHcCCEE---EEEecCCCCC-CCHHHHHHHhCCC-----CCEEEEcCCCCCCCCCcCHHHHHHHHHhCCCC
Confidence 4678888999999877 99998 6788 9999999999742 224445778999999977766443 7
Q ss_pred CCceeccccc------c--ccce-----------eeeecCCCccc-ccccccc-----c----cCCcccCCCCcccHHHH
Q psy13453 92 GPLKVGGVLR------R--VYSS-----------CLVPRGQKSLR-TTVLFHF-----L----FQHWQIPLGRRFRALKL 142 (764)
Q Consensus 92 ~wlHVDa~l~------~--~y~s-----------~ll~rd~~~l~-~~~s~~~-----d----~~d~tle~SRr~~ALkl 142 (764)
+++++|.+.. . ...+ +++..-.+.+- ..+...+ + +....-.. ....+..
T Consensus 186 ~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~ 263 (365)
T 3get_A 186 CLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIANANIISAFYKLRAPF--NVSNLAL 263 (365)
T ss_dssp SEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEECHHHHHHHHHHSCTT--CSCHHHH
T ss_pred cEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEcCHHHHHHHHHhcCCC--CcCHHHH
Confidence 8999999642 1 0000 11111111110 0000000 0 00000001 1334444
Q ss_pred HHHHHHc-cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHH
Q psy13453 143 WMTLRSY-GLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYD 221 (764)
Q Consensus 143 WatL~~l-G~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~ 221 (764)
++....+ -.+.+.++.++..+.++++.+.++++ ++++. ++.-+.+.+++.. . + ..++.+
T Consensus 264 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~-~~~~~~~~~~~~~---------------~-~--~~~~~~ 323 (365)
T 3get_A 264 KAAVAAMDDDEFTEKTLENNFSQMELYKEFAKKH-NIKII-DSYTNFITYFFDE---------------K-N--STDLSE 323 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEC-CCSSSEEEEECSS---------------S-C--HHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEEC-CCCCeEEEEECCC---------------C-C--HHHHHH
Confidence 4443333 23678888889999999999999998 88864 4555556565421 1 1 246788
Q ss_pred HHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13453 222 RIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 222 ~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~ 267 (764)
+|.++|..+....... ..++|+++. ++++++.+++.|+++.
T Consensus 324 ~l~~~gi~v~~g~~~~-~~~iRis~~----~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 324 KLLKKGIIIRNLKSYG-LNAIRITIG----TSYENEKFFTEFDKIL 364 (365)
T ss_dssp HHHTTTEECEECGGGT-CSEEEEECC----CHHHHHHHHHHHHHHH
T ss_pred HHHHCCEEEEECccCC-CCEEEEEcC----CHHHHHHHHHHHHHHh
Confidence 8888887654443333 578999876 7899999999998753
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00014 Score=81.16 Aligned_cols=230 Identities=12% Similarity=0.061 Sum_probs=130.9
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCc-EE-EEeeCCcccccccCch---hhhc----
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCP-MC-SGYCGRTLHQDIQSLN---APVS---- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p-~~-VatAGTT~~G~iDpi~---~ia~---- 90 (764)
.+.+...+++.+|... +.||+++++ +|+++|+++|+.+...+..| ++ +-..+..++|.+=|.+ ++++
T Consensus 173 ~y~~~~~~~~~~g~~~---~~v~~~~~g-~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~ 248 (448)
T 3aow_A 173 TYLAALQAFNFYEPQY---IQIPLDDEG-MKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASE 248 (448)
T ss_dssp CCHHHHHHHHTTCCEE---EEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHcCCEE---EEeccCCCC-CCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHH
Confidence 4567888889888766 889998765 99999999998432222223 33 4566788999885543 4443
Q ss_pred -CCCceeccccccc-cc-----ee----------eeecCCCccccccccccccCCc---------ccCCCCcccHHHHHH
Q psy13453 91 -NGPLKVGGVLRRV-YS-----SC----------LVPRGQKSLRTTVLFHFLFQHW---------QIPLGRRFRALKLWM 144 (764)
Q Consensus 91 -~~wlHVDa~l~~~-y~-----s~----------ll~rd~~~l~~~~s~~~d~~d~---------tle~SRr~~ALklWa 144 (764)
++++++|...... |. ++ .+..-.+.+-.-+...+-.... .-..+-....+..++
T Consensus 249 ~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~~GlriG~v~~~~~l~~~l~~~~~~~~~~~~~~~q~a 328 (448)
T 3aow_A 249 YDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILAPGFRIGWMVGDPGIIRKMEIAKQSTDLCTNVFGQVV 328 (448)
T ss_dssp HTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTCGGGCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred cCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhccccccEEEEEeCHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 8899999864211 10 00 1111111111000000000000 000001123343344
Q ss_pred HHHHc--c--HHHHHHHHHHHHHHHHHHHHHHhc-CC-CeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHH
Q psy13453 145 TLRSY--G--LKGLQAYLRKHISLAKKFADLVEQ-DD-RFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKA 218 (764)
Q Consensus 145 tL~~l--G--~eGy~~~i~~~i~lA~~l~~~I~~-~p-~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~ 218 (764)
+...+ | .+.+.++.++..+..+++.+.|++ .| ++++..+..-..+.+++. . ..+ ..+
T Consensus 329 ~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p~~g~~~~v~~~-~--------------~~~--~~~ 391 (448)
T 3aow_A 329 AWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIWVTLP-D--------------GID--SKK 391 (448)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEEEECS-T--------------TCC--HHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCCCccEEEEEEcC-C--------------CCC--HHH
Confidence 33333 2 233444455555788899999987 57 688654433344445442 1 111 246
Q ss_pred HHHHHHhcCcEEEEecee----CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHc
Q psy13453 219 VYDRIIARKVIYIVKGSF----QDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLR 272 (764)
Q Consensus 219 L~~~L~~~G~~~vs~t~l----~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~ 272 (764)
+.++|.++|..+...... .+..++|+++..+ ++++++.+++.|.++.++..+
T Consensus 392 l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~~~~--~~e~i~~~~~~L~~~l~~~~~ 447 (448)
T 3aow_A 392 MLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTYV--DEDKIMEGIKRLAETIKEELK 447 (448)
T ss_dssp HHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSSS--CTHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCcEEEcchhhcCCCCCCCEEEEEeCCC--CHHHHHHHHHHHHHHHHHHHh
Confidence 888888888766554433 2457899998764 789999999999998776543
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00014 Score=82.20 Aligned_cols=217 Identities=11% Similarity=0.001 Sum_probs=126.2
Q ss_pred HHhhcCCCCCCeEEecC--C-CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCceecc
Q psy13453 27 ATHSLSGTPDQVRLSGL--P-DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKVGG 98 (764)
Q Consensus 27 Aa~~LGl~~~~v~~Vpv--d-~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHVDa 98 (764)
++.+.|... +.||+ + +++++|+++|+++|++. ++-+++. +.+..+.+.|++++++ ++++++|+
T Consensus 158 ~v~~~G~~~---~~v~~~~~~~~~~iD~d~le~~i~~~----~tklIi~--~~sn~~~~~dl~~i~~ia~~~g~~livD~ 228 (483)
T 1rv3_A 158 KISATSIFF---ESMAYKVNPDTGYIDYDRLEENARLF----HPKLIIA--GTSCYSRNLDYGRLRKIADENGAYLMADM 228 (483)
T ss_dssp BCSHHHHHS---EEEEECBCTTTCSBCHHHHHHHHHHH----CCSEEEE--CCSSCCSCCCHHHHHHHHHHTTCEEEEEC
T ss_pred CcccccceE---EEEECccccCCCcCCHHHHHHHHhhc----CCcEEEE--eCCcCCCcCCHHHHHHHHHHcCCEEEEEc
Confidence 344445333 45554 6 67999999999999843 1224444 2233337888988776 89999998
Q ss_pred ccc-----------------------cc-----cceeeeecCCCc-cc---c-----ccccccccC-CcccCCCCccc-H
Q psy13453 99 VLR-----------------------RV-----YSSCLVPRGQKS-LR---T-----TVLFHFLFQ-HWQIPLGRRFR-A 139 (764)
Q Consensus 99 ~l~-----------------------~~-----y~s~ll~rd~~~-l~---~-----~~s~~~d~~-d~tle~SRr~~-A 139 (764)
++. ++ .+++++.++... +. . .+....+.. ....+++-... .
T Consensus 229 ah~~g~~~~~~~~~p~~~~div~~s~~K~l~GprgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~i 308 (483)
T 1rv3_A 229 AHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAI 308 (483)
T ss_dssp TTTHHHHHHTSSCCGGGTCSEEEEESSGGGCCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHH
T ss_pred cchhcccccCCCCCCCCCCcEEEecCcccCCCCCceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHH
Confidence 531 11 113444443210 00 0 000000000 11224443222 3
Q ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC-ceeEEEEeeccccccccccccCccCCccHHHHH
Q psy13453 140 LKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS-MGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKA 218 (764)
Q Consensus 140 LklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~-l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~ 218 (764)
..+.++++.+..+++.++.++..++++++.+.|++. +++++.+.. ...+.+.+.+. +.+ ..+
T Consensus 309 aal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~v~~~~~--------------g~~--~~~ 371 (483)
T 1rv3_A 309 AGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL-GYKIVTGGSDNHLILVDLRSK--------------GTD--GGR 371 (483)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEEGGGG--------------TCC--HHH
T ss_pred HHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhc-CCEeccCCCCCceEEEeccCC--------------CCC--HHH
Confidence 355677888777899999999999999999999997 999886532 22333333221 111 134
Q ss_pred HHHHHHhcCcEEEEe--cee---CCeeEEEEeccCC---CCCHHHHHHHHHHHHHHHHH
Q psy13453 219 VYDRIIARKVIYIVK--GSF---QDRLFMRFAICSS---QTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 219 L~~~L~~~G~~~vs~--t~l---~g~~~LRi~v~np---~Tt~e~i~~~l~~l~~~~~~ 269 (764)
+.+.|.+.|...... ..- -+..++|+++... ..++++++.+++.|+++.+.
T Consensus 372 ~~~~L~~~gI~v~~~~~pg~~~~~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 372 AEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp HHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcEEecCCCCCCCcCCCCceEEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 667777778643311 110 1346899987642 33499999999999888654
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=97.99 E-value=6e-05 Score=81.87 Aligned_cols=207 Identities=13% Similarity=0.029 Sum_probs=124.4
Q ss_pred eEEecCC-CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCceeccccccc--------
Q psy13453 38 VRLSGLP-DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKVGGVLRRV-------- 103 (764)
Q Consensus 38 v~~Vpvd-~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHVDa~l~~~-------- 103 (764)
++.+|++ +++.+|+++|+++|++.. +-+++.+ .+..|...+++++.+ ++++++|++....
T Consensus 138 ~~~~~~~~~~~~~d~~~l~~~i~~~~----~~~v~~~--~~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~ 211 (405)
T 2vi8_A 138 FVAYGVDPETHVIDYDDVREKARLHR----PKLIVAA--AAAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHP 211 (405)
T ss_dssp EEEECBCTTTCSBCHHHHHHHHHHHC----CSEEEEC--CSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSC
T ss_pred EEecccccccCCcCHHHHHHHHHhcC----CeEEEEe--CCCCCccCCHHHHHHHHHHcCCEEEEEccccccccccCcCC
Confidence 4667776 678999999999998631 2233332 244577778888775 8999999964210
Q ss_pred ----cceeeeecCCCccc---ccccc-ccc-------c-CCcccCCCC-cccHHHHHHHHHHccHHHHHHHHHHHHHHHH
Q psy13453 104 ----YSSCLVPRGQKSLR---TTVLF-HFL-------F-QHWQIPLGR-RFRALKLWMTLRSYGLKGLQAYLRKHISLAK 166 (764)
Q Consensus 104 ----y~s~ll~rd~~~l~---~~~s~-~~d-------~-~d~tle~SR-r~~ALklWatL~~lG~eGy~~~i~~~i~lA~ 166 (764)
...+++..-.+.+. ..+-. ..+ . ..++ .++- ......+.+++..+..+++.++.++..++++
T Consensus 212 ~~~~~~di~~~s~sK~~~g~~gG~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~ 290 (405)
T 2vi8_A 212 NPVPYAHFVTTTTHKTLRGPRGGMILCQEQFAKQIDKAIFPGI-QGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAK 290 (405)
T ss_dssp CSTTTCSEEEEESSSTTCCCSCEEEEECHHHHHHHHHHHTTTT-CSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred CccccCCEEEEeccccCCCCCCeEEEEcHHHHHHHHhhhcccc-cCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 00111111111111 00000 000 0 0111 1221 1222344566666555788999999999999
Q ss_pred HHHHHHhcCCCeEEeCCC-CceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEec------eeCCe
Q psy13453 167 KFADLVEQDDRFELVCPP-SMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKG------SFQDR 239 (764)
Q Consensus 167 ~l~~~I~~~p~~ell~~P-~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t------~l~g~ 239 (764)
++.+.|++. +++++.++ ..+.+.+++.+. +.+ ...+.+.|.+.|....... .....
T Consensus 291 ~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~--------------~~~--~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~ 353 (405)
T 2vi8_A 291 RLASALQNE-GFTLVSGGTDNHLLLVDLRPQ--------------QLT--GKTAEKVLDEVGITVNKNTIPYDPESPFVT 353 (405)
T ss_dssp HHHHHHHHT-TCEEGGGSCSSSEEEEECGGG--------------TCC--HHHHHHHHHHHTEECEEECCTTCSSCTTTC
T ss_pred HHHHHHHhC-CCeEecCCCCceEEEEEccCC--------------CCC--HHHHHHHHHHcCceeccCcCccccCCCCCC
Confidence 999999998 89987653 466677765321 111 2457778888887654322 11123
Q ss_pred eEEEEeccC---CCCCHHHHHHHHHHHHHHHH
Q psy13453 240 LFMRFAICS---SQTEESDVQLGWNEIRTATE 268 (764)
Q Consensus 240 ~~LRi~v~n---p~Tt~e~i~~~l~~l~~~~~ 268 (764)
.++|+++.. +.+++++++.+++.|+++.+
T Consensus 354 ~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~ 385 (405)
T 2vi8_A 354 SGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLK 385 (405)
T ss_dssp SEEEEECHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred CceEEeeeeeeecCCCHHHHHHHHHHHHHHHh
Confidence 579998764 35789999999999988754
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=7.7e-05 Score=81.28 Aligned_cols=207 Identities=11% Similarity=-0.009 Sum_probs=121.9
Q ss_pred EEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCceeccccccc-------c--
Q psy13453 39 RLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKVGGVLRRV-------Y-- 104 (764)
Q Consensus 39 ~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHVDa~l~~~-------y-- 104 (764)
+.+|+++++.+|+++|+++|++.+ +-+++.+.+++ |...|++++++ ++++++|.+.... .
T Consensus 146 ~~~~~~~~~~~d~~~l~~~i~~~~----~~~v~~~~~~~--~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~ 219 (420)
T 3gbx_A 146 VPYGIDESGKIDYDEMAKLAKEHK----PKMIIGGFSAY--SGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNP 219 (420)
T ss_dssp EEEEECTTCSCCHHHHHHHHHHHC----CSEEEECCTTC--CSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCS
T ss_pred EeccCCccCCcCHHHHHHHHHhcC----CeEEEEecCcc--CCccCHHHHHHHHHHcCCEEEEECCcchhceecccCCcc
Confidence 455677889999999999998741 22444444443 56888988876 8999999963100 0
Q ss_pred ---ceeeeecCCCccc---ccccccc----cc-------CCcccCCCC-cccHHHHHHHHHHccHHHHHHHHHHHHHHHH
Q psy13453 105 ---SSCLVPRGQKSLR---TTVLFHF----LF-------QHWQIPLGR-RFRALKLWMTLRSYGLKGLQAYLRKHISLAK 166 (764)
Q Consensus 105 ---~s~ll~rd~~~l~---~~~s~~~----d~-------~d~tle~SR-r~~ALklWatL~~lG~eGy~~~i~~~i~lA~ 166 (764)
..+++..-.+.+. ..+-... .+ ...+..++- ......+++++.....+++.++.++..+.++
T Consensus 220 ~~~~di~~~s~sK~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~ 299 (420)
T 3gbx_A 220 VPHAHVVTTTTHKTLAGPRGGLILAKGGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAK 299 (420)
T ss_dssp TTTSSEEEEESSGGGCSCSCEEEEESSCCHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred cccCCEEEeecccCCCCCCceEEEEcCCcHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 0011111111111 0000000 00 000111111 2222355666766667889999999999999
Q ss_pred HHHHHHhcCCCeEEeCC-CCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEe------ceeCCe
Q psy13453 167 KFADLVEQDDRFELVCP-PSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVK------GSFQDR 239 (764)
Q Consensus 167 ~l~~~I~~~p~~ell~~-P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~------t~l~g~ 239 (764)
++.+.|++ .+++++.+ +..+.+.+.+.+.+ .+ ...+.+.|.+.|..+... ...-+.
T Consensus 300 ~l~~~L~~-~g~~~~~~~~~~~~~~~~~~~~~--------------~~--~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~ 362 (420)
T 3gbx_A 300 AMVEVFLN-RGYKVVSGGTENHLFLLDLVDKN--------------LT--GKEADAALGRANITVNKNSVPNDPKSPFVT 362 (420)
T ss_dssp HHHHHHHH-TTCEEGGGSCSSSEEEEECGGGT--------------CC--HHHHHHHHHHTTEECEEECCTTCSSCTTTC
T ss_pred HHHHHHHh-cCCeeccCCCCCeEEEEEcCCCC--------------CC--HHHHHHHHHHCCcEeccccCCCCccccCCC
Confidence 99999998 68998764 34556666543211 11 246677787888765441 111233
Q ss_pred eEEEEeccCCC---CCHHHHHHHHHHHHHHHH
Q psy13453 240 LFMRFAICSSQ---TEESDVQLGWNEIRTATE 268 (764)
Q Consensus 240 ~~LRi~v~np~---Tt~e~i~~~l~~l~~~~~ 268 (764)
..+|+++.... .++++++.+++.|+++.+
T Consensus 363 ~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~ 394 (420)
T 3gbx_A 363 SGIRIGSPAVTRRGFKEAEVKELAGWMCDVLD 394 (420)
T ss_dssp SEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred cceEEecchhcccCCCHHHHHHHHHHHHHHHh
Confidence 46999875443 468999999999887653
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=1e-06 Score=99.69 Aligned_cols=164 Identities=15% Similarity=0.028 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
+..+.++.+.|+++++ .. ...+|+++||+||..|+.+||... .+ +-+|.....-
T Consensus 139 ~~~~~~Lae~L~~~~p-~~---------~~v~~~nSGseA~~~Aik~ar~~t-gr---------------~~ii~~~~~y 192 (465)
T 2yky_A 139 TENEALFAEAVCDRFP-SI---------DLVRFTNSGTEANLMALATATAIT-GR---------------KTVLAFDGGY 192 (465)
Confidence 4556666677777773 11 136799999999999999987531 10 1134444445
Q ss_pred chhHHHHH---HhCCC--ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc----HHHHHHHHH
Q psy13453 641 NSSVEKSA---IIGDV--PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN----LEELGPICQ 711 (764)
Q Consensus 641 H~Sv~kAa---~~lGl--~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp----l~eIa~i~~ 711 (764)
|-+..-+. ...|+ .+..+|- -|+++|+++|++. +..+.+|++.--..++|.+-+ +++|+++|+
T Consensus 193 HG~~~~~~sg~~~~g~~~~~~~~~~-----~d~~~l~~~l~~~---~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~ 264 (465)
T 2yky_A 193 HGGLLNFASGHAPTNAPYHVVLGVY-----NDVEGTADLLKRH---GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEAS 264 (465)
Confidence 54333222 11233 2233332 3789999999752 122435554433344787666 999999999
Q ss_pred hcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 712 EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 712 ~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
+||++|++|.+|. + ...+.+.....|+ ..|-+ .+.|+++..+..|++
T Consensus 265 ~~g~llI~DEv~~-~-r~g~~~a~~~~gv-~pDi~--t~sK~lg~G~piG~v 311 (465)
T 2yky_A 265 RCGALLIFDEVMT-S-RLSGGGAQEMLGI-SADLT--TLGKYIGGGMSFGAF 311 (465)
Confidence 9999999999999 4 2211111111233 34655 456999875555654
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=97.95 E-value=2.9e-05 Score=84.51 Aligned_cols=215 Identities=11% Similarity=0.065 Sum_probs=130.6
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCC--CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccC---chhhhc----
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPD--SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQS---LNAPVS---- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~--~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDp---i~~ia~---- 90 (764)
.|.++..++...|... +.||+++ ++.+|+++|+++|++. +-+++-+.++.++|.+=| ++++++
T Consensus 134 ~~~~~~~~~~~~g~~~---~~v~~~~~~~~~~d~~~l~~~l~~~-----~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~ 205 (389)
T 1o4s_A 134 VWVSYIPQIILAGGTV---NVVETFMSKNFQPSLEEVEGLLVGK-----TKAVLINSPNNPTGVVYRREFLEGLVRLAKK 205 (389)
T ss_dssp CCTTHHHHHHHTTCEE---EEEECCGGGTTCCCHHHHHHTCCTT-----EEEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHcCCEE---EEEecCCccCCCCCHHHHHHhcccC-----ceEEEEcCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 5678889999999876 8999984 5789999999998642 224445677889999844 777665
Q ss_pred -CCCceeccccccc-cc----e-----------eeeecCCCccc-cccccccccCCc---------ccCCCCcccHHHHH
Q psy13453 91 -NGPLKVGGVLRRV-YS----S-----------CLVPRGQKSLR-TTVLFHFLFQHW---------QIPLGRRFRALKLW 143 (764)
Q Consensus 91 -~~wlHVDa~l~~~-y~----s-----------~ll~rd~~~l~-~~~s~~~d~~d~---------tle~SRr~~ALklW 143 (764)
++++++|.+.... +. + +++..-.+.+- ..+...+-+.+. ...++-....+..+
T Consensus 206 ~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~ 285 (389)
T 1o4s_A 206 RNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEKVATAVSKIQSHTTSCINTVAQY 285 (389)
T ss_dssp HTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHH
T ss_pred cCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccceEEEEeCHHHHHHHHHHhhhcccCCCHHHHH
Confidence 8899999964311 10 1 01111111110 000000000000 00001122344555
Q ss_pred HHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEE-EeeccccccccccccCccCCccHHHHHHHHH
Q psy13453 144 MTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCF-RLKVRFWDKLDNLFGTISFGDNDLNKAVYDR 222 (764)
Q Consensus 144 atL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~F-ry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~ 222 (764)
++...+.. ++.++.++..+.++++.+.|++. +++++. |+-+.++| ++ | . + ..++.++
T Consensus 286 a~~~~l~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~-~--~------------~----~~~l~~~ 343 (389)
T 1o4s_A 286 AALKALEV-DNSYMVQTFKERKNFVVERLKKM-GVKFVE-PEGAFYLFFKV-R--G------------D----DVKFCER 343 (389)
T ss_dssp HHHHHTTC-CCHHHHHHHHHHHHHHHHHHHHT-TCCCCC-CSBSSEEEEEC-S--S------------C----HHHHHHH
T ss_pred HHHHHHhc-cHHHHHHHHHHHHHHHHHHHHhc-CCeeec-CCcceEEEEeC-C--C------------C----HHHHHHH
Confidence 55555543 27788888889999999999987 787654 55454443 33 1 0 1 2467788
Q ss_pred HH-hcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13453 223 II-ARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 223 L~-~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~ 267 (764)
|. +.|..+..........++|+++.+ ++++++.+++.|.++.
T Consensus 344 l~~~~gi~v~~g~~f~~~~~~Ris~~~---~~~~l~~~l~~l~~~l 386 (389)
T 1o4s_A 344 LLEEKKVALVPGSAFLKPGFVRLSFAT---SIERLTEALDRIEDFL 386 (389)
T ss_dssp HHHHHCEECEEGGGGTCTTEEEEECCS---CHHHHHHHHHHHHHHH
T ss_pred HHHHCCEEEeCchhcCCCCeEEEEEeC---CHHHHHHHHHHHHHHH
Confidence 86 778765544333223489998873 7889999998887654
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00013 Score=79.39 Aligned_cols=219 Identities=10% Similarity=-0.011 Sum_probs=133.7
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCc
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPL 94 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wl 94 (764)
.|.+...+++..|... +.||+ +|+++|+++|++... +++-+++-+....++|.+.|++++++ ++++
T Consensus 136 ~~~~~~~~~~~~g~~~---~~v~~-----~d~~~l~~~l~~~~~-~~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~l 206 (398)
T 3a2b_A 136 DHASIIDGSRLSFSKV---IKYGH-----NNMEDLRAKLSRLPE-DSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAV 206 (398)
T ss_dssp CCHHHHHHHHHSSSEE---EEECT-----TCHHHHHHHHHTSCS-SSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEE
T ss_pred cCHHHHHHHHHcCCce---EEeCC-----CCHHHHHHHHHhhcc-CCceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEE
Confidence 6888999999999876 77876 689999999986321 22234455666788999999999886 8999
Q ss_pred eeccccccc-cc----e------------eeeecCCCccc--ccccc-ccc----c----CCcccCCCCcccHH-HHHHH
Q psy13453 95 KVGGVLRRV-YS----S------------CLVPRGQKSLR--TTVLF-HFL----F----QHWQIPLGRRFRAL-KLWMT 145 (764)
Q Consensus 95 HVDa~l~~~-y~----s------------~ll~rd~~~l~--~~~s~-~~d----~----~d~tle~SRr~~AL-klWat 145 (764)
++|.+.... ++ + +++..-.+.+. +.+-. ..+ + ..+...++-..... .+..+
T Consensus 207 i~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~ 286 (398)
T 3a2b_A 207 MVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLASLGGFVAGDADVIDFLKHNARSVMFSASMTPASVASTLKA 286 (398)
T ss_dssp EEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHH
T ss_pred EEECCCcccccCCCCCchHhhcCCCcCCeEEEecccccccCCCcEEEeCHHHHHHHHHhcccceecCCCCHHHHHHHHHH
Confidence 999965211 11 0 01101111111 00000 000 0 00111111111111 23445
Q ss_pred HHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHh
Q psy13453 146 LRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIA 225 (764)
Q Consensus 146 L~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~ 225 (764)
|+.+ +.+.++.++..+.++++.+.|++. +++++ +|..+++.+++. . ..-..++.++|.+
T Consensus 287 l~~~--~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~g~~~~~~~~-~----------------~~~~~~l~~~l~~ 345 (398)
T 3a2b_A 287 LEII--QNEPEHIEKLWKNTDYAKAQLLDH-GFDLG-ATESPILPIFIR-S----------------NEKTFWVTKMLQD 345 (398)
T ss_dssp HHHH--HHCTHHHHHHHHHHHHHHHHHHHT-TCCBC-SCCSSEEEEECC-C----------------HHHHHHHHHHHHH
T ss_pred HHHH--hhCHHHHHHHHHHHHHHHHHHHhc-CCCcC-CCCCCEEEEEcC-C----------------HHHHHHHHHHHHH
Confidence 5543 335677888889999999999987 77765 455666666542 1 1113578889998
Q ss_pred cCcEEEEecee---CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 226 RKVIYIVKGSF---QDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 226 ~G~~~vs~t~l---~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
+|......... .+..++|+++.. .+++++++.+++.|+++.++
T Consensus 346 ~gi~v~~~~~~~~~~~~~~iRis~~~-~~~~e~i~~~~~~l~~~l~~ 391 (398)
T 3a2b_A 346 DGVFVNPVVSPAVPAEESLIRFSLMA-THTYDQIDEAIEKMVKVFKQ 391 (398)
T ss_dssp TTEECEEECTTTSCGGGCEEEEECCT-TCCHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEeeCCCCCCCCCceEEEEEeC-CCCHHHHHHHHHHHHHHHHH
Confidence 98765443322 135689997664 45789999999999988755
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00014 Score=78.23 Aligned_cols=213 Identities=8% Similarity=0.013 Sum_probs=131.5
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhh---c----CC
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPV---S----NG 92 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia---~----~~ 92 (764)
.+.+...++...|... +.||+++++.+|+++|+++|+ . +-+++-+.++.++|.+=|.+++. + ++
T Consensus 109 ~~~~~~~~~~~~g~~~---~~v~~~~~~~~d~~~l~~~i~-~-----~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~ 179 (356)
T 1fg7_A 109 TYGMYSVSAETIGVEC---RTVPTLDNWQLDLQGISDKLD-G-----VKVVYVCSPNNPTGQLINPQDFRTLLELTRGKA 179 (356)
T ss_dssp SCTHHHHHHHHHTCEE---EECCCCTTSCCCHHHHHTSCT-T-----EEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTC
T ss_pred ChHHHHHHHHHcCCEE---EEeeCCCCCCCCHHHHHHHhc-C-----CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCC
Confidence 4566778888899876 889998888999999999885 2 22444467899999997665543 2 67
Q ss_pred Cceecccccccc--ce-----------eeeecCCCccc-cccccccccCCc-------ccCCCCcccHHHHHHHHHHccH
Q psy13453 93 PLKVGGVLRRVY--SS-----------CLVPRGQKSLR-TTVLFHFLFQHW-------QIPLGRRFRALKLWMTLRSYGL 151 (764)
Q Consensus 93 wlHVDa~l~~~y--~s-----------~ll~rd~~~l~-~~~s~~~d~~d~-------tle~SRr~~ALklWatL~~lG~ 151 (764)
++++|.+..... .+ +++..-.+.+- .-+...+-+.+. .....-....+..+++...+..
T Consensus 180 ~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~l~~ 259 (356)
T 1fg7_A 180 IVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVIAPYPLSTPVADIAAQALSP 259 (356)
T ss_dssp EEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHHHHHHHHSCSSCSCHHHHHHHHHHTSH
T ss_pred EEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeCHHHHHHHHHhcCCCCCCHHHHHHHHHHhcC
Confidence 889998642110 01 11111111110 000000000000 0000013556777888888877
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCc
Q psy13453 152 KG---LQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKV 228 (764)
Q Consensus 152 eG---y~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~ 228 (764)
.+ +.++.++..+..+++.+.|++.+++..+.++.-+.+.++.. + ..++.++|.+.|.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~------------------~--~~~l~~~L~~~gI 319 (356)
T 1fg7_A 260 QGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK------------------A--SSAVFKSLWDQGI 319 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET------------------T--HHHHHHHHHHTTE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEECCCCCeEEEEECC------------------C--HHHHHHHHHHCCE
Confidence 66 57777888889999999999987754455555556655541 0 1467888888887
Q ss_pred EEEE-eceeCCeeEEEEeccCCCCCHHHHHHHHHHHHH
Q psy13453 229 IYIV-KGSFQDRLFMRFAICSSQTEESDVQLGWNEIRT 265 (764)
Q Consensus 229 ~~vs-~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~ 265 (764)
.... ........++|+++. ++++++.+++.+++
T Consensus 320 ~v~~~g~~~~~~~~iRis~~----~~~e~~~~~~~l~~ 353 (356)
T 1fg7_A 320 ILRDQNKQPSLSGCLRITVG----TREESQRVIDALRA 353 (356)
T ss_dssp ECEECTTSTTCTTEEEEECC----CHHHHHHHHHHHHT
T ss_pred EEEECCCCCCCCCeEEEEeC----CHHHHHHHHHHHHh
Confidence 6544 222211348999875 47899999888764
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00012 Score=83.08 Aligned_cols=242 Identities=8% Similarity=-0.054 Sum_probs=138.9
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCC--CCcccHHHHHHHHHHHhhCCCCc-EEEEeeCCcccccc---cCchhhhc---
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPD--SEWLAYLTLRTIYESFRKSFLCP-MCSGYCGRTLHQDI---QSLNAPVS--- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~--~~rmD~~aLe~~I~~~~~~G~~p-~~VatAGTT~~G~i---Dpi~~ia~--- 90 (764)
.|.++..++..+|... +.+|+++ ++.+|+++|+++|++....|..+ ++|-+.++.++|.+ +.+.++++
T Consensus 191 ~y~~~~~~~~~~g~~~---~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~ 267 (500)
T 3tcm_A 191 QYPLYSASIALHGGAL---VPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCK 267 (500)
T ss_dssp CCTHHHHHHHHTTCEE---EEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHcCCEE---EEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHH
Confidence 5678888999999876 9999985 46999999999999876666555 34566788899998 55666643
Q ss_pred --CCCceeccccccc-c------ce----------------ee-eecCCCccc--cccccccccC---Cccc--------
Q psy13453 91 --NGPLKVGGVLRRV-Y------SS----------------CL-VPRGQKSLR--TTVLFHFLFQ---HWQI-------- 131 (764)
Q Consensus 91 --~~wlHVDa~l~~~-y------~s----------------~l-l~rd~~~l~--~~~s~~~d~~---d~tl-------- 131 (764)
++++++|...... | .+ ++ +..-.+.+. ..+...+-.. +..+
T Consensus 268 ~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~ 347 (500)
T 3tcm_A 268 NEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKIA 347 (500)
T ss_dssp HHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHHHHHHH
T ss_pred HcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHHHHHHH
Confidence 8999999864211 1 11 01 111111110 0000000000 0000
Q ss_pred CCCCcccHHHHHHHHHHcc------------HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEE-Eee-ccc
Q psy13453 132 PLGRRFRALKLWMTLRSYG------------LKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCF-RLK-VRF 197 (764)
Q Consensus 132 e~SRr~~ALklWatL~~lG------------~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~F-ry~-P~~ 197 (764)
...-....+..+++...+. .+-..++.++.-+.++++.+.|+++|++++. +|+-+..+| +.. |..
T Consensus 348 ~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~-~~~g~~~~~~~~~lp~~ 426 (500)
T 3tcm_A 348 SVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCN-EAEGAMYVFPQICLPQK 426 (500)
T ss_dssp HTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECC-CCCBTTEECCEECCCHH
T ss_pred hcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEe-cCCeEEEEeeeecCchh
Confidence 0000112222333332221 1234455566778888999999999999864 677776666 221 111
Q ss_pred cccccccccCccCCccHHHHHHHHHHHhcCcEEEEecee---CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHcc
Q psy13453 198 WDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSF---QDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLRG 273 (764)
Q Consensus 198 ~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l---~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~~ 273 (764)
...... ..+...-...+.+.|.+.|.+++..+.. .+...+|++++ +++++++.+++.|.++.++++++
T Consensus 427 ~~~~~~-----~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~---~~~e~i~~~i~~l~~~~~~~~~~ 497 (500)
T 3tcm_A 427 AIEAAK-----AANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL---PQEDKIPAVISRFTVFHEAFMSE 497 (500)
T ss_dssp HHHHHH-----HHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC---SCTTTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHH-----hcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC---CCHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0001111122346666778876654332 45678999988 57789999999999988877653
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0002 Score=78.01 Aligned_cols=218 Identities=12% Similarity=0.004 Sum_probs=125.0
Q ss_pred HHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCceeccccc
Q psy13453 27 ATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKVGGVLR 101 (764)
Q Consensus 27 Aa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHVDa~l~ 101 (764)
.....|.+. .++.+++++++.+|+++|+++|++.. +-+++.+-++ .|.+.|++++++ ++++++|.+..
T Consensus 130 ~~~~~g~~~-~~~~~~~~~~~~~d~~~l~~~i~~~~----~~~v~~~~~~--~G~~~~l~~i~~l~~~~~~~li~Dea~~ 202 (417)
T 3n0l_A 130 KVSSSGKMY-ESCFYGVELDGRIDYEKVREIAKKEK----PKLIVCGASA--YARVIDFAKFREIADEIGAYLFADIAHI 202 (417)
T ss_dssp ------CCS-EEEEECCCTTSSCCHHHHHHHHHHHC----CSEEEECCSS--CCSCCCHHHHHHHHHHHTCEEEEECTTT
T ss_pred hhhhhccee-eeEeccCCCCCCcCHHHHHHHHHhcC----CeEEEECCcc--cCccCCHHHHHHHHHHcCCEEEEECccc
Confidence 344555444 23566788889999999999998531 2244444444 499999999876 89999999631
Q ss_pred c--------c----cceeeeecCCCcccc---cccccc--c-------cCCcccCCCCc-ccHHHHHHHHHHccHHHHHH
Q psy13453 102 R--------V----YSSCLVPRGQKSLRT---TVLFHF--L-------FQHWQIPLGRR-FRALKLWMTLRSYGLKGLQA 156 (764)
Q Consensus 102 ~--------~----y~s~ll~rd~~~l~~---~~s~~~--d-------~~d~tle~SRr-~~ALklWatL~~lG~eGy~~ 156 (764)
. + ...++...-.+.+.. .+-... + ....+..++-. .....+++++.....+++.+
T Consensus 203 ~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~ 282 (417)
T 3n0l_A 203 AGLVVAGEHPSPFPYAHVVSSTTHKTLRGPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKV 282 (417)
T ss_dssp HHHHHTTSSCCCTTTCSEEEEESSTTTCSCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHH
T ss_pred hhhhhcccCCCccccceEEEeeCccccCCCCeeEEEECCHHHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHH
Confidence 0 0 001222211122211 000000 0 01112222221 22235566777767788999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEeCC-CCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEece
Q psy13453 157 YLRKHISLAKKFADLVEQDDRFELVCP-PSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGS 235 (764)
Q Consensus 157 ~i~~~i~lA~~l~~~I~~~p~~ell~~-P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~ 235 (764)
+.++..++++++.+.|++ .+++++.. ...+.+.+.+.+.+ .+ ...+.+.|.+.|........
T Consensus 283 ~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~~~~--------------~~--~~~~~~~l~~~gi~v~~~~~ 345 (417)
T 3n0l_A 283 YAKQVRTNAQVLANVLMD-RKFKLVSDGTDNHLVLMSFLDRE--------------FS--GKDADLALGNAGITANKNTV 345 (417)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTCEEGGGSCSSSEEEEECTTSS--------------SC--HHHHHHHHHHTTEECEECCC
T ss_pred HHHHHHHHHHHHHHHHHh-CCceeccCCCCceEEEEEcccCC--------------CC--HHHHHHHHHHcCeEEecccc
Confidence 999999999999999998 78988763 33444555443211 11 14677778888875432210
Q ss_pred -e-----CCeeEEEEeccC---CCCCHHHHHHHHHHHHHHHH
Q psy13453 236 -F-----QDRLFMRFAICS---SQTEESDVQLGWNEIRTATE 268 (764)
Q Consensus 236 -l-----~g~~~LRi~v~n---p~Tt~e~i~~~l~~l~~~~~ 268 (764)
. -....+|+.... ...++++++.+++.|+++.+
T Consensus 346 ~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~ 387 (417)
T 3n0l_A 346 PGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILD 387 (417)
T ss_dssp TTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHh
Confidence 0 113568987532 23578999999999987754
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=6.4e-05 Score=84.71 Aligned_cols=162 Identities=13% Similarity=0.051 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
..|.++.+.+++++..- ....|+++|||||..|+++||....+ +-+|.....-|
T Consensus 127 ~~~~~lae~l~~~~p~~----------~~v~f~~SGsEA~e~AiklAr~~tgr----------------~~ii~~~~~yH 180 (454)
T 4ao9_A 127 LLEGRLARLICERFPQI----------EQLRFTNSGTEANLMALTAALHFTGR----------------RKIVVFSGGYH 180 (454)
T ss_dssp SSHHHHHHHHHHHSTTC----------SEEEEESSHHHHHHHHHHHHHHHHTC----------------CEEEEETTCBC
T ss_pred HHHHHHHHHHHHhCCCC----------CEEEEeCchHHHHHHHHHHHHhcccC----------------CeEEEEeCCcC
Confidence 35566677788877432 24689999999999999999976421 11333333444
Q ss_pred hhHHHHHHhC---CC--ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc----HHHHHHHHHh
Q psy13453 642 SSVEKSAIIG---DV--PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN----LEELGPICQE 712 (764)
Q Consensus 642 ~Sv~kAa~~l---Gl--~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp----l~eIa~i~~~ 712 (764)
-...-+.... +. ....+|-+ |++++++.|++... ...+|++=--..+.|.+-| |++|+++|++
T Consensus 181 G~t~~~~~~~~~~~~~~~~~~~p~n-----d~~~l~~~l~~~~~---~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~ 252 (454)
T 4ao9_A 181 GGVLGFGARPSPTTVPFDFLVLPYN-----DAQTARAQIERHGP---EIAVVLVEPMQGASGCIPGQPDFLQALRESATQ 252 (454)
T ss_dssp STTCBBSSSBCTTSCCSEEEEECTT-----CHHHHHHHHHHTGG---GEEEEEECSEESTTTCEECCHHHHHHHHHHHHH
T ss_pred CccccccccccCccCCCCcccCCCc-----hHHHHHHHHhhcCC---ceEEEEeccccCCCCccCCchhhHHHHHHHHhh
Confidence 3211110000 11 23334432 68899999976432 2445544333344577766 9999999999
Q ss_pred cCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCcee
Q psy13453 713 YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSA 762 (764)
Q Consensus 713 ~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~ 762 (764)
||++|++|-.+.| ....-+....-|+ ..|-+|+. |.++.-+..|+
T Consensus 253 ~g~lLI~DEV~tG--R~G~~~a~e~~gv-~PDi~t~g--K~lggG~Piga 297 (454)
T 4ao9_A 253 VGALLVFDEVMTS--RLAPHGLANKLGI-RSDLTTLG--KYIGGGMSFGA 297 (454)
T ss_dssp HTCEEEEECTTGG--GGSTTCHHHHHTC-CCSEEEEE--GGGGTTSSCEE
T ss_pred cCCEEEEECCCcC--CCccccchhccCC-CCcEEEec--cccCCCCccee
Confidence 9999999988865 2222222223366 46887765 44443344444
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00014 Score=82.63 Aligned_cols=219 Identities=14% Similarity=0.015 Sum_probs=123.8
Q ss_pred HHhhcCCCCCCeEEecCC-CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCceecccc
Q psy13453 27 ATHSLSGTPDQVRLSGLP-DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKVGGVL 100 (764)
Q Consensus 27 Aa~~LGl~~~~v~~Vpvd-~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHVDa~l 100 (764)
++.+.|... .++.+++| +++.+|+++|+++|.+.+ .-+++. +.+.+|.+.|++++++ ++++|+|+++
T Consensus 168 ~i~~~g~~~-~~~~~~vd~~~~~iD~d~le~~l~~~~----~klIi~--~~s~~~~~~dl~~i~~ia~~~g~~livD~Ah 240 (490)
T 2a7v_A 168 RISATSIFF-ESMPYKLNPKTGLIDYNQLALTARLFR----PRLIIA--GTSAYARLIDYARMREVCDEVKAHLLADMAH 240 (490)
T ss_dssp --------------CCBCTTTCSBCHHHHHHHHHHHC----CSEEEE--CCSSCCSCCCHHHHHHHHHHTTCEEEEECGG
T ss_pred hHHHcCCeE-EEEecccccccCCcCHHHHHHHHhhcC----CcEEEE--cCCCCCCcccHHHHHHHHHHcCCEEEEcccc
Confidence 455666554 12344556 579999999999997642 124443 3344566777888775 8999999963
Q ss_pred c-----------------------cc-----cceeeeecCCCcc---------ccccccccc-cCCcccCCCCcccHH-H
Q psy13453 101 R-----------------------RV-----YSSCLVPRGQKSL---------RTTVLFHFL-FQHWQIPLGRRFRAL-K 141 (764)
Q Consensus 101 ~-----------------------~~-----y~s~ll~rd~~~l---------~~~~s~~~d-~~d~tle~SRr~~AL-k 141 (764)
. ++ .+++++.++.... ...+...++ ....+++++.....+ .
T Consensus 241 ~~glv~~g~~~~~~~~aDiv~~S~hK~l~Gp~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaA 320 (490)
T 2a7v_A 241 ISGLVAAKVIPSPFKHADIVTTTTHKTLRGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAA 320 (490)
T ss_dssp GHHHHHTTSSCCGGGTCSEEEEESSGGGCSCSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHH
T ss_pred ccccccCCcCCCCCCCCCEEEECCcccCccccchheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHH
Confidence 1 11 1234444432000 000000001 112334555433333 3
Q ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCC-CCceeEEEEeeccccccccccccCccCCccHHHHHHH
Q psy13453 142 LWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCP-PSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVY 220 (764)
Q Consensus 142 lWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~-P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~ 220 (764)
+-++++..-.+++.++.++..+++++|++.|++. +|+++.. .+..++.+...+.+ .+ -.++.
T Consensus 321 la~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~-G~~v~~~~t~t~lv~vdl~~~g--------------~~--~~~~~ 383 (490)
T 2a7v_A 321 VAVALKQACTPMFREYSLQVLKNARAMADALLER-GYSLVSGGTDNHLVLVDLRPKG--------------LD--GARAE 383 (490)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECTTTT--------------CC--HHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHc-CcEEecCCCCCeEEEEEeCCCC--------------CC--HHHHH
Confidence 3445665545677889999999999999999985 9999853 45566666554321 11 14577
Q ss_pred HHHHhcCcEEEEeceeC------CeeEEEEec---cCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 221 DRIIARKVIYIVKGSFQ------DRLFMRFAI---CSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 221 ~~L~~~G~~~vs~t~l~------g~~~LRi~v---~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
+.|.+.|.. ++...+- .+..||+.+ ++...+++|++.+.+.|.++....
T Consensus 384 ~~L~~~GI~-v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~~ 441 (490)
T 2a7v_A 384 RVLELVSIT-ANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIG 441 (490)
T ss_dssp HHHHHTTEE-CEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCeE-EecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHHHHHhh
Confidence 778778864 3322211 136799943 344568999999999998876543
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=97.91 E-value=6.6e-05 Score=81.29 Aligned_cols=216 Identities=11% Similarity=0.042 Sum_probs=127.5
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCC-CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccC---chhhhc-----
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPD-SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQS---LNAPVS----- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~-~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDp---i~~ia~----- 90 (764)
.|.++..+++..|... +.||+++ ++.+|+++|+++|++. +-+++-+.++.++|.+=| ++++++
T Consensus 124 ~~~~~~~~~~~~g~~~---~~v~~~~~~~~~d~~~l~~~l~~~-----~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~ 195 (386)
T 1u08_A 124 SYDSYAPAIALSGGIV---KRMALQPPHFRVDWQEFAALLSER-----TRLVILNTPHNPSATVWQQADFAALWQAIAGH 195 (386)
T ss_dssp CCTTHHHHHHHTTCEE---EEEECCTTTCCCCHHHHHHHCCTT-----EEEEEEESSCTTTCCCCCHHHHHHHHHHHTTS
T ss_pred CchhHHHHHHHcCCEE---EEeecCcccCcCCHHHHHHhhccc-----CEEEEEeCCCCCCCccCCHHHHHHHHHHHHHc
Confidence 4678888999999876 8999986 6899999999998532 224445578889999865 455543
Q ss_pred CCCceeccccccc-cc-----eeeee---cCCC----ccccccc-----cccccCCc-----------ccCCCCcccHHH
Q psy13453 91 NGPLKVGGVLRRV-YS-----SCLVP---RGQK----SLRTTVL-----FHFLFQHW-----------QIPLGRRFRALK 141 (764)
Q Consensus 91 ~~wlHVDa~l~~~-y~-----s~ll~---rd~~----~l~~~~s-----~~~d~~d~-----------tle~SRr~~ALk 141 (764)
++|+++|...... |. ++.-. .+.. ++...+. ..+-+... .... ....+.
T Consensus 196 ~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~--~~~~~~ 273 (386)
T 1u08_A 196 EIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPISAEIRKVHQYLTF--SVNTPA 273 (386)
T ss_dssp CCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCHHHHHHHHHHHHHHTS--SCCHHH
T ss_pred CcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceEEEEcCHHHHHHHHHHHHhhcc--CCChHH
Confidence 7899999965321 10 11000 0000 0000010 00000000 0001 112222
Q ss_pred ---HHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHH
Q psy13453 142 ---LWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKA 218 (764)
Q Consensus 142 ---lWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~ 218 (764)
+..+|+. +.+.+.++.++..+.++++.+.|++. ++++..+..-..+.+++...+ ..+ ..+
T Consensus 274 ~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~-------------~~~--~~~ 336 (386)
T 1u08_A 274 QLALADMLRA-EPEHYLALPDFYRQKRDILVNALNES-RLEILPCEGTYFLLVDYSAVS-------------TLD--DVE 336 (386)
T ss_dssp HHHHHHHHHH-CTHHHHTHHHHHHHHHHHHHHHTTSS-SCEECCCCBSSEEEEECTTTC-------------CSC--HHH
T ss_pred HHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCceEEEEEecCCCC-------------CCC--HHH
Confidence 2233332 36678888888999999999999987 888765433345666552100 011 246
Q ss_pred HHHHHH-hcCcEEEEecee----CCeeEEEEeccCCCCCHHHHHHHHHHHHH
Q psy13453 219 VYDRII-ARKVIYIVKGSF----QDRLFMRFAICSSQTEESDVQLGWNEIRT 265 (764)
Q Consensus 219 L~~~L~-~~G~~~vs~t~l----~g~~~LRi~v~np~Tt~e~i~~~l~~l~~ 265 (764)
+.++|. +.|..+...... .+..++|+++.+ ++++++.+++.|++
T Consensus 337 ~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~---~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 337 FCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAK---KESTLLAAAERLRQ 385 (386)
T ss_dssp HHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCS---CHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcC---CHHHHHHHHHHHhh
Confidence 777776 568765543333 246789998863 78999999888753
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=3.4e-05 Score=91.88 Aligned_cols=243 Identities=8% Similarity=-0.050 Sum_probs=133.2
Q ss_pred eeeeHHHH-HhhcCCCCCCeEEecCCCC-----CcccHHHH-----HHHHHHH-hh---CCCC-cEEEEeeCCccccccc
Q psy13453 20 LIYESFKA-THSLSGTPDQVRLSGLPDS-----EWLAYLTL-----RTIYESF-RK---SFLC-PMCSGYCGRTLHQDIQ 83 (764)
Q Consensus 20 ~~YSv~KA-a~~LGl~~~~v~~Vpvd~~-----~rmD~~aL-----e~~I~~~-~~---~G~~-p~~VatAGTT~~G~iD 83 (764)
.|+|+..+ +.+.|... +.++.+.+ +.+|+++| +++|+++ .. .++. -+++.+.+| ++|.+.
T Consensus 222 ~H~S~~~~~~~l~Ga~~---v~v~~~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn-~~G~v~ 297 (730)
T 1c4k_A 222 NHKSVYNSALAMAGGRP---VYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGT-YDGTIY 297 (730)
T ss_dssp CCHHHHHHHTTTTCCEE---EEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBC-TTSEEE
T ss_pred chHHHHHHHHHHCCCEE---EEEeCCccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCC-CCCeec
Confidence 68999998 88888766 77777532 45899999 7777643 11 1111 245556675 699999
Q ss_pred Cchhhhc-----CCCceecccccc--ccce------eeee----cCCCccccccccccccC-----------CcccCCC-
Q psy13453 84 SLNAPVS-----NGPLKVGGVLRR--VYSS------CLVP----RGQKSLRTTVLFHFLFQ-----------HWQIPLG- 134 (764)
Q Consensus 84 pi~~ia~-----~~wlHVDa~l~~--~y~s------~ll~----rd~~~l~~~~s~~~d~~-----------d~tle~S- 134 (764)
|++++++ ++++|||+++.. .++. .+-. -+....-..++.+-.++ +-.+.++
T Consensus 298 dl~~I~~la~~~g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g~~ 377 (730)
T 1c4k_A 298 NAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQL 377 (730)
T ss_dssp CHHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTST
T ss_pred CHHHHHHHHHHcCCeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhcCcc
Confidence 9999886 889999997531 1110 0100 00000000001100000 0011111
Q ss_pred ------------------Ccc-c-HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEeCCCCc-------
Q psy13453 135 ------------------RRF-R-ALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQ-DDRFELVCPPSM------- 186 (764)
Q Consensus 135 ------------------Rr~-~-ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~-~p~~ell~~P~l------- 186 (764)
-.. . ...+-+++..+-.++..+++++..++++++++.|++ +++|+++.+...
T Consensus 378 ~~i~~~~~~~~~~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~ 457 (730)
T 1c4k_A 378 RYCDHKHFNNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWED 457 (730)
T ss_dssp TCCCHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGG
T ss_pred cccCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccc
Confidence 100 0 112333455555545577889999999999999999 899999765320
Q ss_pred -------eeEEEEeeccccccc------------cc---cccCc--------cCCccHHHHHHHHHHHhcCcEEEEecee
Q psy13453 187 -------GLVCFRLKVRFWDKL------------DN---LFGTI--------SFGDNDLNKAVYDRIIARKVIYIVKGSF 236 (764)
Q Consensus 187 -------~iV~Fry~P~~~~~~------------~~---~~~~~--------~~~~d~~n~~L~~~L~~~G~~~vs~t~l 236 (764)
+-.+|++.|++.... +. ..... -.+...-...+.+.|.++|... . .
T Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v-~---~ 533 (730)
T 1c4k_A 458 GDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIP-E---K 533 (730)
T ss_dssp SCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCC-S---E
T ss_pred cccccccccchhhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEE-E---E
Confidence 001111111111000 00 00000 0000001257888888888632 1 1
Q ss_pred CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy13453 237 QDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVL 271 (764)
Q Consensus 237 ~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~ 271 (764)
-+...+|+ ++++.+++++++.+++.|+++.+++.
T Consensus 534 ~~~~~ir~-~~s~g~t~e~i~~Ll~aL~~i~~~~~ 567 (730)
T 1c4k_A 534 SDLNSILF-LMTPAETPAKMNNLITQLLQLQRLIE 567 (730)
T ss_dssp ECSSEEEE-ECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEE-EeCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 23456887 46777899999999999999987763
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=8.2e-05 Score=80.39 Aligned_cols=217 Identities=12% Similarity=0.010 Sum_probs=129.2
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCc
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPL 94 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wl 94 (764)
.|.++..+++..|... +.+|. +|+++|+++|++... .+-+++-..++.++|.+.|++++++ ++++
T Consensus 132 ~~~~~~~~~~~~g~~~---~~~~~-----~d~~~l~~~l~~~~~--~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~l 201 (384)
T 1bs0_A 132 SHASLLEAASLSPSQL---RRFAH-----NDVTHLARLLASPCP--GQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWL 201 (384)
T ss_dssp CCHHHHHHHHTSSSEE---EEECT-----TCHHHHHHHHHSCCS--SCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEE
T ss_pred ccHHHHHHHHHcCCCE---EEeCC-----CCHHHHHHHHHhcCC--CCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEE
Confidence 5778888999988766 77774 589999999975321 1223356667889999999999876 8899
Q ss_pred eeccccccc-cc----e----------eeeecCCCcccc--ccc-cccc----cCC--cccCCCCcccHHH---HHHHHH
Q psy13453 95 KVGGVLRRV-YS----S----------CLVPRGQKSLRT--TVL-FHFL----FQH--WQIPLGRRFRALK---LWMTLR 147 (764)
Q Consensus 95 HVDa~l~~~-y~----s----------~ll~rd~~~l~~--~~s-~~~d----~~d--~tle~SRr~~ALk---lWatL~ 147 (764)
++|...... +. + +++..-.+.+.. .+- ...+ +.. .....+-....+. +.++++
T Consensus 202 i~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~ 281 (384)
T 1bs0_A 202 MVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLA 281 (384)
T ss_dssp EEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSCCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHH
T ss_pred EEECCcccceecCCCCchHHhcCCCCcEEEeeccchhhccCcEEEeCHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHH
Confidence 999964211 10 0 111011111100 000 0000 000 0000111222333 334455
Q ss_pred HccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcC
Q psy13453 148 SYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARK 227 (764)
Q Consensus 148 ~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G 227 (764)
.+....+.++.++..+.++++.+.|++. ++++. ++..+++.|++.. ..-..++.++|.++|
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~-----------------~~~~~~l~~~l~~~g 342 (384)
T 1bs0_A 282 VIRSDEGDARREKLAALITRFRAGVQDL-PFTLA-DSCSAIQPLIVGD-----------------NSRALQLAEKLRQQG 342 (384)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHHHHTTS-SCEEC-SCCSSBCCEEEES-----------------HHHHHHHHHHHHHTT
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHhc-CCccc-CCCCCEEEEEeCC-----------------HHHHHHHHHHHHHCC
Confidence 4422255678888899999999999987 68876 3555566665521 011357888888888
Q ss_pred cEEEEecee---CCeeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 228 VIYIVKGSF---QDRLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 228 ~~~vs~t~l---~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
......... .+..++|+++. ..+++++++.+++.|+++
T Consensus 343 i~v~~~~~~~~~~~~~~~Ri~~~-~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 343 CWVTAIRPPTVPAGTARLRLTLT-AAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp EECCEECTTSSCTTCEEECCBCC-TTCCHHHHHHHHHHHHHH
T ss_pred cEEEeecCCCCCCCCceEEEEEc-CCCCHHHHHHHHHHHHhh
Confidence 754333211 23478999765 455799999999998765
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00019 Score=75.85 Aligned_cols=210 Identities=11% Similarity=-0.013 Sum_probs=128.4
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc----CCCce
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS----NGPLK 95 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~----~~wlH 95 (764)
.|.++..+++..|+.. +.||+++++.+|+++|+++. ++-+++-+.++.++|.+=|++++.+ +.++.
T Consensus 99 ~~~~~~~~~~~~g~~~---~~v~~~~~~~~d~~~l~~~~-------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~i 168 (337)
T 3p1t_A 99 GFDGYRARIAVSGLRH---FEIGLTDDLLLDPNDLAQVS-------RDDCVVLANPSNPTGQALSAGELDQLRQRAGKLL 168 (337)
T ss_dssp SCSHHHHHHTTSCCEE---EEECBCTTSSBCHHHHTTCC-------TTEEEEEESSCTTTCCCCCHHHHHHHHHHCSEEE
T ss_pred CcHHHHHHHHHcCCEE---EEecCCCCCCCCHHHHHhhc-------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCcEE
Confidence 5677888999999877 99999999999999998762 1224467778899999999988775 33344
Q ss_pred eccccccc-c-c---------eeeeecCCCccc-ccccccc-----c----cCCcccCCCCcccHHHHHHHHHHcc-HHH
Q psy13453 96 VGGVLRRV-Y-S---------SCLVPRGQKSLR-TTVLFHF-----L----FQHWQIPLGRRFRALKLWMTLRSYG-LKG 153 (764)
Q Consensus 96 VDa~l~~~-y-~---------s~ll~rd~~~l~-~~~s~~~-----d----~~d~tle~SRr~~ALklWatL~~lG-~eG 153 (764)
+|.+.... + . .+++..-.+.+- .-+...+ + +... ...-....+...+....+- .+.
T Consensus 169 vDea~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~l~~~--~~~~~~~~~~~~a~~~~l~~~~~ 246 (337)
T 3p1t_A 169 IDETYVDYSSFRARGLAYGENELVFRSFSKSYGLAGLRLGALFGPSELIAAMKRK--QWFCNVGTLDLHALEAALDNDRA 246 (337)
T ss_dssp EECTTGGGSSCSSSCCCCBTTEEEEEESSSTTCCTTTCCEEEECCHHHHHHHHTT--SCTTCSCHHHHHHHHHHHTCHHH
T ss_pred EECCChhhccccccccccCCCEEEEeeCchhccCcchheEEEEeCHHHHHHHHhh--cCCCCCCHHHHHHHHHHhCCHHH
Confidence 46643110 0 0 011111111110 0000000 0 0000 0001223333333333332 345
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEe
Q psy13453 154 LQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVK 233 (764)
Q Consensus 154 y~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~ 233 (764)
+.+.+++..+..+++.+.|++. ++++ .+|+.+.+.|+.. +. ..+.+.|.+.|......
T Consensus 247 ~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~~~~~~----------------~~----~~~~~~l~~~gi~v~~g 304 (337)
T 3p1t_A 247 REAHIAKTLAQRRRVADALRGL-GYRV-ASSEANFVLVENA----------------AG----ERTLRFLRERGIQVKDA 304 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCCB-CCCSSSEEEEECT----------------TT----HHHHHHHHHTTEECEEG
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-cCEE-CCCCCeEEEEEcC----------------CH----HHHHHHHHHCCeEEEEC
Confidence 7888888899999999999987 7775 4566666666432 11 35667788889765555
Q ss_pred ceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13453 234 GSFQDRLFMRFAICSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 234 t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~ 267 (764)
.......++|+++. ++++++.+++.|+++.
T Consensus 305 ~~~~~~~~iRis~~----~~~~~~~l~~al~~~~ 334 (337)
T 3p1t_A 305 GQFGLHHHIRISIG----REEDNDRLLAALAEYS 334 (337)
T ss_dssp GGGTCCSEEEEECC----CHHHHHHHHHHHHHHT
T ss_pred ccCCCCCeEEEecC----CHHHHHHHHHHHHHHh
Confidence 44433568999876 6899999999988764
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.85 E-value=2.5e-05 Score=85.57 Aligned_cols=219 Identities=11% Similarity=0.014 Sum_probs=130.7
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCC---CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccC---chhhhc---
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPD---SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQS---LNAPVS--- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~---~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDp---i~~ia~--- 90 (764)
.|.++..++..+|... +.||+++ ++.+|+++|+++|++. +-+++-+.++.++|.+=| ++++++
T Consensus 119 ~y~~~~~~~~~~g~~~---~~v~~~~~~~~~~~d~~~l~~~l~~~-----~~~v~l~~~~nptG~~~~~~~l~~i~~~~~ 190 (411)
T 2o0r_A 119 FYDSYSPVVAMAGAHR---VTVPLVPDGRGFALDADALRRAVTPR-----TRALIINSPHNPTGAVLSATELAAIAEIAV 190 (411)
T ss_dssp CCTTHHHHHHHTTCEE---EEEECEEETTEEECCHHHHHHHCCTT-----EEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHcCCEE---EEeeccccccCCCCCHHHHHHhhccC-----ceEEEEeCCCCCCCCCCCHHHHHHHHHHHH
Confidence 4677888999999876 8999975 4789999999999642 223445678899999844 455554
Q ss_pred --CCCceeccccccc-cc-----ee-----------eeecCCCccc-ccccccc-----c-------cCC-cccCCCCcc
Q psy13453 91 --NGPLKVGGVLRRV-YS-----SC-----------LVPRGQKSLR-TTVLFHF-----L-------FQH-WQIPLGRRF 137 (764)
Q Consensus 91 --~~wlHVDa~l~~~-y~-----s~-----------ll~rd~~~l~-~~~s~~~-----d-------~~d-~tle~SRr~ 137 (764)
++++++|...... +. ++ ++..-.+.+- ..+...+ + ... .+...+ ..
T Consensus 191 ~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~-~~ 269 (411)
T 2o0r_A 191 AANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWACGPAELIAGVRAAKQYLSYVGG-AP 269 (411)
T ss_dssp HTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEECCHHHHHHHHHHHHHHTSCCC-TT
T ss_pred HcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEEEEeeCHHHHHHHHHHHhhccCCCC-hH
Confidence 8899999964211 10 00 0000000000 0000000 0 000 011111 12
Q ss_pred cHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCce-eEEEEeeccccccccccccCccCCccHHH
Q psy13453 138 RALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMG-LVCFRLKVRFWDKLDNLFGTISFGDNDLN 216 (764)
Q Consensus 138 ~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~-iV~Fry~P~~~~~~~~~~~~~~~~~d~~n 216 (764)
....+..+|.. +.+.+.++.++..+.++++.+.|++. ++++.. |+-+ .+.|++.... ..+ .
T Consensus 270 ~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~g~~~~~~~~~~~-------------~~~--~ 331 (411)
T 2o0r_A 270 FQPAVALALDT-EDAWVAALRNSLRARRDRLAAGLTEI-GFAVHD-SYGTYFLCADPRPLG-------------YDD--S 331 (411)
T ss_dssp HHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHH-TCEECC-CCBSSEEEEECGGGT-------------CCC--H
T ss_pred HHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHHc-CCEecC-CCeeEEEEEecCCCC-------------CCC--H
Confidence 22233444443 47778888999999999999999987 888754 4444 5666653100 011 2
Q ss_pred HHHHHHHH-hcCcEEEEecee---C----------CeeEEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13453 217 KAVYDRII-ARKVIYIVKGSF---Q----------DRLFMRFAICSSQTEESDVQLGWNEIRTATE 268 (764)
Q Consensus 217 ~~L~~~L~-~~G~~~vs~t~l---~----------g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~ 268 (764)
.++.++|. +.|..+...... . +..++|+++.+ ++++++.+++.|+++.+
T Consensus 332 ~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~---~~e~i~~~~~~l~~~~~ 394 (411)
T 2o0r_A 332 TEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCK---RDDTLDEAIRRLSVLAE 394 (411)
T ss_dssp HHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCS---CHHHHHHHHHHHGGGGC
T ss_pred HHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecC---CHHHHHHHHHHHHHHHh
Confidence 46777776 568765543322 1 35689999864 68899999999877543
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.85 E-value=7.3e-05 Score=81.12 Aligned_cols=223 Identities=11% Similarity=0.044 Sum_probs=130.7
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCC--CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccC---chhhhc----
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPD--SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQS---LNAPVS---- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~--~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDp---i~~ia~---- 90 (764)
.|.++..++..+|... +.||+++ ++.+|+++|+++ ++-+++-+.++.++|.+=| +.++++
T Consensus 124 ~~~~~~~~~~~~g~~~---~~v~~~~~~~~~~d~~~l~~~--------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~ 192 (391)
T 3h14_A 124 GYPSYRQILRALGLVP---VDLPTAPENRLQPVPADFAGL--------DLAGLMVASPANPTGTMLDHAAMGALIEAAQA 192 (391)
T ss_dssp CCHHHHHHHHHTTCEE---EEEECCGGGTTSCCHHHHTTS--------CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHcCCEE---EEeecCcccCCCCCHHHHHhc--------CCeEEEECCCCCCCCccCCHHHHHHHHHHHHH
Confidence 4667888999999877 9999985 458899999886 1235555577889999877 555554
Q ss_pred -CCCceeccccccc-cc----e--------eeeecCCCccc-cccccccccCCc---------ccCCCCcccHHHHHHHH
Q psy13453 91 -NGPLKVGGVLRRV-YS----S--------CLVPRGQKSLR-TTVLFHFLFQHW---------QIPLGRRFRALKLWMTL 146 (764)
Q Consensus 91 -~~wlHVDa~l~~~-y~----s--------~ll~rd~~~l~-~~~s~~~d~~d~---------tle~SRr~~ALklWatL 146 (764)
++++++|...... +. + +++..-.+.+- .-+...+-..+. .-..+-....+..++++
T Consensus 193 ~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 272 (391)
T 3h14_A 193 QGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMTGWRVGWMVVPEDQVRVVERIAQNMFICAPHASQVAAL 272 (391)
T ss_dssp TTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCTTSCCEEEECCGGGHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred cCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCccceeEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHH
Confidence 8999999864211 10 0 11111111110 000000000000 00001122233333332
Q ss_pred HHc-cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEE-EeeccccccccccccCccCCccHHHHHHHHHHH
Q psy13453 147 RSY-GLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCF-RLKVRFWDKLDNLFGTISFGDNDLNKAVYDRII 224 (764)
Q Consensus 147 ~~l-G~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~F-ry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~ 224 (764)
..+ +.+.+.++.++..+..+++.+.|++. ++..+..|+-+...| ++... ..+ ..++.++|.
T Consensus 273 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~--------------~~~--~~~~~~~l~ 335 (391)
T 3h14_A 273 AALDCDAELQANLDVYKANRKLMLERLPKA-GFTRIAPPDGAFYVYADVSDL--------------TDD--SRAFAAEIL 335 (391)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCBCCCCBTTEEEEECTTT--------------CSC--HHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHHHHc-CCCcccCCCeeEEEEEecCcc--------------CCC--HHHHHHHHH
Confidence 222 67888899999999999999999987 455555666544443 33210 011 246777777
Q ss_pred hc-CcEEEEecee---CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHcc
Q psy13453 225 AR-KVIYIVKGSF---QDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLRG 273 (764)
Q Consensus 225 ~~-G~~~vs~t~l---~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~~ 273 (764)
++ |..+...... .+..++|+++.. ++++++++++.|+++.++....
T Consensus 336 ~~~gi~v~~g~~~~~~~~~~~iRis~~~---~~~~i~~~l~~l~~~~~~~~~~ 385 (391)
T 3h14_A 336 EKAGVAVTPGLDFDPERGAGTLRFSYAR---ATADIEEGLDRLEAFMQARGEG 385 (391)
T ss_dssp HHHCEECEEGGGTCTTTGGGEEEEECCS---CHHHHHHHHHHHHHHHHHC---
T ss_pred HHCCEEEcCchhhCCCCCCCeEEEEecC---CHHHHHHHHHHHHHHHHHhccc
Confidence 65 8765543333 236799998776 6799999999999887664433
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00037 Score=76.14 Aligned_cols=215 Identities=12% Similarity=-0.003 Sum_probs=129.3
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCc
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPL 94 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wl 94 (764)
.|.|...++.+.|... +.++. +|+++|+++|++.. +-+++...+..++|.+.|++++.+ ++|+
T Consensus 152 ~~~~~~~~~~~~g~~~---~~~~~-----~d~~~le~~l~~~~----~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~l 219 (409)
T 3kki_A 152 AHMSLWEGARYANAQA---HPFMH-----NNCDHLRMLIQRHG----PGIIVVDSIYSTLGTIAPLAELVNISKEFGCAL 219 (409)
T ss_dssp SCHHHHHHHHHTTCEE---EEECT-----TCHHHHHHHHHHHC----SCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEE
T ss_pred cCHHHHHHHHHcCCeE---EEecC-----CCHHHHHHHHHhcC----CeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEE
Confidence 5778899999988765 55554 68999999998742 224566777888999999999887 8999
Q ss_pred eeccccccc-c---c-eeee----ecCCC----cccccccc-------ccccC--------CcccCCCCc-ccHHHHHHH
Q psy13453 95 KVGGVLRRV-Y---S-SCLV----PRGQK----SLRTTVLF-------HFLFQ--------HWQIPLGRR-FRALKLWMT 145 (764)
Q Consensus 95 HVDa~l~~~-y---~-s~ll----~rd~~----~l~~~~s~-------~~d~~--------d~tle~SRr-~~ALklWat 145 (764)
++|.+.... + + +... ..+.+ ++...+.. ..+.. .++..++-. ..+..+.++
T Consensus 220 i~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aa 299 (409)
T 3kki_A 220 LVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYRAGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETT 299 (409)
T ss_dssp EEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSCEEEEESSSGGGTHHHHCHHHHHSBCCCHHHHHHHHHH
T ss_pred EEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCCCceEEEECHHHHHHHHHhCcCccccCCCcHHHHHHHHHH
Confidence 999864211 1 0 0000 00000 00111100 00000 011111111 111233444
Q ss_pred HHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHh
Q psy13453 146 LRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIA 225 (764)
Q Consensus 146 L~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~ 225 (764)
+..+-. ..++.++..++++++.+.|++. ++++. +...++.++... ..-..++.++|.+
T Consensus 300 l~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~~-----------------~~~~~~~~~~L~~ 357 (409)
T 3kki_A 300 LEIIES--ADNRRQHLDRMARKLRIGLSQL-GLTIR--SESQIIGLETGD-----------------ERNTEKVRDYLES 357 (409)
T ss_dssp HHHHHH--CHHHHHHHHHHHHHHHHHHHTT-TCCCC--CSSSEEEEEEES-----------------HHHHHHHHHHHHH
T ss_pred HHHHhc--CHHHHHHHHHHHHHHHHHHHHc-CCccC--CCCCEEEEEeCC-----------------HHHHHHHHHHHHH
Confidence 444322 2567777888999999999987 67765 355666666531 1123568888999
Q ss_pred cCcEEEEec---eeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 226 RKVIYIVKG---SFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 226 ~G~~~vs~t---~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
+|.+..... .-.+..++|+++.. .+++++++++++.|+++.+.
T Consensus 358 ~Gv~v~~~~~~~~~~~~~~iRi~~~~-~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 358 NGVFGSVFCRPATSKNKNIIRLSLNS-DVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp TTEECEEECTTSSCTTCEEEEEECCT-TCCHHHHHHHHHHHHHHHHH
T ss_pred CCceEeeeCCCCcCCCCcEEEEEccC-CCCHHHHHHHHHHHHHHHhc
Confidence 987543221 12356799997654 56789999999999887653
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.83 E-value=2.1e-05 Score=88.05 Aligned_cols=207 Identities=8% Similarity=-0.009 Sum_probs=122.1
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecC--CCC----CcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc---
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGL--PDS----EWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS--- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpv--d~~----~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~--- 90 (764)
.|.|+.+++.+.|... +.||+ +++ +.+|+++| +.. ++-+++.+. .+++|.+.|++++++
T Consensus 105 ~h~s~~~~~~~~G~~~---~~v~~~~~~~~~~~~~~d~~~l---~~~-----~~~~v~~~~-~n~~G~~~~l~~I~~l~~ 172 (446)
T 2x3l_A 105 VHKSVLHALDISQQEG---HFIETHQSPLTNHYNKVNLSRL---NND-----GHKLVVLTY-PNYYGETFNVEEVIKSLH 172 (446)
T ss_dssp CCHHHHHHHHHHTCCE---EECEEEECTTTSSEEEEEC---------------CCEEEEES-SCTTSCCCCHHHHHHHHH
T ss_pred ccHHHHHHHHHcCCeE---EEEeCeeccccCcCCCCCHHHH---cCC-----CceEEEEEC-CCCCeEecCHHHHHHHHH
Confidence 6899999999999887 88988 665 78999988 322 223445555 455999999999886
Q ss_pred --CCCceecccccc-c-cc-----------eeeeecCCCccccccccc-----cccCC--------ccc-CCCCcccH-H
Q psy13453 91 --NGPLKVGGVLRR-V-YS-----------SCLVPRGQKSLRTTVLFH-----FLFQH--------WQI-PLGRRFRA-L 140 (764)
Q Consensus 91 --~~wlHVDa~l~~-~-y~-----------s~ll~rd~~~l~~~~s~~-----~d~~d--------~tl-e~SRr~~A-L 140 (764)
++|+|+|++... . |. .++...-.+.+..-.... -+..+ ... .+|....+ .
T Consensus 173 ~~~~~livDea~~~~~~f~~~~~~~~~~g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~~~~~~~~~~~~~~~s~~~~~~a 252 (446)
T 2x3l_A 173 QLNIPVLIDEAHGAHFGLQGFPDSTLNYQADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMA 252 (446)
T ss_dssp HTTCCEEEECTTCTTTTSTTSCCCGGGGTCSEEEECHHHHSSSCTTCEEEEEETTCTTHHHHHHHHHHHSCSSCCHHHHH
T ss_pred hcCCeEEEcchhhhhhccCCCCCChHHcCCCEEEECCccccccccccEEEEEcCCcCCHHHHHHHHHHHcCCCchHHHHH
Confidence 899999997432 0 10 011110001000000000 00100 011 12222222 3
Q ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHH
Q psy13453 141 KLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVY 220 (764)
Q Consensus 141 klWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~ 220 (764)
.++++++++...|..++.++..++++++.+. +++++.+.+-+.+.|+.. +.+ ..++.
T Consensus 253 al~~a~~~l~~~g~~~~~~~~~~l~~~l~~~-----g~~~~~~~~~~~l~i~~~----------------~~~--~~~l~ 309 (446)
T 2x3l_A 253 SLESAAQFYKTYDSTLFFAKRAQLIECLENK-----GFEMLQVDDPLKLLIKYE----------------GFT--GHDIQ 309 (446)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-----TCEEEECSSTTEEEEECT----------------TSC--HHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-----CCEECcCCCCeEEEEEeC----------------CcC--HHHHH
Confidence 5566777776667667888888889888887 788876443334666542 111 14678
Q ss_pred HHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13453 221 DRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 221 ~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~ 267 (764)
+.|.++|+... ..+..++|+++. +.++++++ .+++.|+++.
T Consensus 310 ~~L~~~GI~v~----~~g~~~iRi~~~-~~~t~e~i-~l~~aL~~~~ 350 (446)
T 2x3l_A 310 NWFMNAHIYLE----LADDYQALAILP-LWHHDDTY-LFDSLLRKIE 350 (446)
T ss_dssp HHHHHTTEEES----EECSSCEEEECC-CCCTTCCC-CHHHHHHHHH
T ss_pred HHHHHCCCEEE----ecCCCEEEEEee-cCCCHHHH-HHHHHHHHHH
Confidence 88888887542 124467999765 44467788 9999888775
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=2.6e-05 Score=84.27 Aligned_cols=211 Identities=10% Similarity=0.067 Sum_probs=130.1
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCC-CcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCC
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDS-EWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGP 93 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~-~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~w 93 (764)
.|.++..++..+|... +.+|++++ +.+|+++|+++|+++ +-+|- ++.++|...|++++.+ +++
T Consensus 84 ~~~~~~~~~~~~G~~~---~~~~~~~~~~~~d~~~l~~~i~~~------~~~v~--~~~~~G~~~~~~~i~~la~~~~~~ 152 (367)
T 3nyt_A 84 TYVATAETVALLGAKP---VYVDIDPRTYNLDPQLLEAAITPR------TKAII--PVSLYGQCADFDAINAIASKYGIP 152 (367)
T ss_dssp SCTHHHHHHHHTTCEE---EEECBCTTTCSBCGGGTGGGCCTT------EEEEC--CBCGGGCCCCHHHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHcCCEE---EEEecCCccCCcCHHHHHHhcCcC------CcEEE--eeCCccChhhHHHHHHHHHHcCCE
Confidence 5788999999999877 99999864 899999999998542 22322 6678999999999876 899
Q ss_pred ceeccccc--ccc-----c---eeeeec--CCCcccc----ccccc--c----------------ccCCcccCCCCcccH
Q psy13453 94 LKVGGVLR--RVY-----S---SCLVPR--GQKSLRT----TVLFH--F----------------LFQHWQIPLGRRFRA 139 (764)
Q Consensus 94 lHVDa~l~--~~y-----~---s~ll~r--d~~~l~~----~~s~~--~----------------d~~d~tle~SRr~~A 139 (764)
+++|++.. ..+ + -++.+. ..+.+.. .+-.. . .|....+..+-+...
T Consensus 153 li~D~a~~~g~~~~~~~~~~~~di~~~Sf~~~K~l~~~g~gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~ 232 (367)
T 3nyt_A 153 VIEDAAQSFGASYKGKRSCNLSTVACTSFFPSAPLGCYGDGGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDT 232 (367)
T ss_dssp BEEECTTTTTCEETTEETTSSSSEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCH
T ss_pred EEEECccccCCeECCeeccCCCCEEEEECCCCCcCCCcCceeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccH
Confidence 99999631 111 0 111111 0111111 00000 0 000011122335666
Q ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCc-----eeEEEEeeccccccccccccCccCCccH
Q psy13453 140 LKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSM-----GLVCFRLKVRFWDKLDNLFGTISFGDND 214 (764)
Q Consensus 140 LklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l-----~iV~Fry~P~~~~~~~~~~~~~~~~~d~ 214 (764)
+..++.+..+ +.+.+.+++..++++++.+.|++. ++++...+.- .++.++.. +
T Consensus 233 ~~aa~~~~~l--~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~----------------~--- 290 (367)
T 3nyt_A 233 LQAAILLPKL--EIFEEEIALRQKVAAEYDLSLKQV-GIGTPFIEVNNISVYAQYTVRMD----------------N--- 290 (367)
T ss_dssp HHHHHHHHHH--HTHHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCTTEECCCSSEEEECS----------------S---
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccC-CeeccCCCCCCceeeEEEEEEeC----------------C---
Confidence 7666666554 456788889999999999999987 4555433322 12223211 1
Q ss_pred HHHHHHHHHHhcCcEEEEec--eeC------------------CeeEEEEeccCCCCCHHHHHHHHHHHHH
Q psy13453 215 LNKAVYDRIIARKVIYIVKG--SFQ------------------DRLFMRFAICSSQTEESDVQLGWNEIRT 265 (764)
Q Consensus 215 ~n~~L~~~L~~~G~~~vs~t--~l~------------------g~~~LRi~v~np~Tt~e~i~~~l~~l~~ 265 (764)
...+.++|.++|...-... .++ ....||+ -+++.+++++++.+++.|++
T Consensus 291 -~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l-p~~~~~t~~~i~~v~~~~~~ 359 (367)
T 3nyt_A 291 -RESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSL-PMHPYLDTASIKIICAALTN 359 (367)
T ss_dssp -HHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEE-CCCTTCCHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEc-cCCCCCCHHHHHHHHHHHHH
Confidence 2467788888886321111 110 1357887 57889999999999888765
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00029 Score=76.76 Aligned_cols=209 Identities=10% Similarity=0.027 Sum_probs=122.5
Q ss_pred EEecCC-CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCceecccccc-------cc-
Q psy13453 39 RLSGLP-DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKVGGVLRR-------VY- 104 (764)
Q Consensus 39 ~~Vpvd-~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHVDa~l~~-------~y- 104 (764)
+.+|++ +++.+|+++|+++|++.. +-+++.+.+ ..|...+++++++ ++++++|.+... ..
T Consensus 148 ~~~~~~~~~~~~d~~~l~~~i~~~~----~~~v~~~~~--~~~~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~ 221 (425)
T 3ecd_A 148 LQYGVSRDTMLIDYDQVEALAQQHK----PSLIIAGFS--AYPRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHAN 221 (425)
T ss_dssp EEECCCTTTSSCCHHHHHHHHHHHC----CSEEEEECS--CCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCC
T ss_pred eecCCCcccCccCHHHHHHHHhhcC----CcEEEEccc--cCCCcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccC
Confidence 455665 458999999999998531 123433323 3478899988876 899999997210 00
Q ss_pred ----ceeeeecCCCcccc---cccccc--c-------cCCcccCCCC-cccHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Q psy13453 105 ----SSCLVPRGQKSLRT---TVLFHF--L-------FQHWQIPLGR-RFRALKLWMTLRSYGLKGLQAYLRKHISLAKK 167 (764)
Q Consensus 105 ----~s~ll~rd~~~l~~---~~s~~~--d-------~~d~tle~SR-r~~ALklWatL~~lG~eGy~~~i~~~i~lA~~ 167 (764)
..+++..-.+.+.. .+-... + ....+..++- ......+++++..+..+++.++.++..+++++
T Consensus 222 ~~~~~di~~~s~sK~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~ 301 (425)
T 3ecd_A 222 PVEHAHVVTSTTHKTLRGPRGGFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQA 301 (425)
T ss_dssp GGGTCSEEEEESSGGGCCCSCEEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred chhcCcEEEecCCcccCCCCcEEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 01111111122210 000000 0 0011111222 22334556677777778899999999999999
Q ss_pred HHHHHhcCCCeEEeCC-CCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEec-e-----eCCee
Q psy13453 168 FADLVEQDDRFELVCP-PSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKG-S-----FQDRL 240 (764)
Q Consensus 168 l~~~I~~~p~~ell~~-P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t-~-----l~g~~ 240 (764)
+.+.|++ .+++++.+ +..+++.+.+.+.+ .+ ...+.+.|.+.|..+.... . .....
T Consensus 302 l~~~L~~-~g~~~~~~~~~~~~~~~~~~~~~--------------~~--~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~ 364 (425)
T 3ecd_A 302 LGDVLKA-GGVDLVTGGTDNHLLLVDLRPKG--------------LK--GAQVEQALERAGITCNKNGIPFDPEKPTITS 364 (425)
T ss_dssp HHHHHHH-TTCEEGGGSCSSSEEEEECGGGT--------------CC--HHHHHHHHHHTTEECEECCCTTCSSCTTTCS
T ss_pred HHHHHHh-CCCeeccCCCCceEEEEEeCCCC--------------CC--HHHHHHHHHHcCCEecccccCCCCCCCCCcc
Confidence 9999998 58888764 35556666553211 11 2467777888887554221 1 11234
Q ss_pred EEEEecc---CCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 241 FMRFAIC---SSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 241 ~LRi~v~---np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
.+|++.. ....++++++.+++.|+++.++.
T Consensus 365 ~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 365 GIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp EEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence 7999743 23346899999999998887664
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00018 Score=78.05 Aligned_cols=223 Identities=14% Similarity=0.095 Sum_probs=132.3
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCC---CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccC---chhhhc---
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPD---SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQS---LNAPVS--- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~---~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDp---i~~ia~--- 90 (764)
.|.++..++..+|... +.||++. ++.+|+++|+++|++. ++-+++-+.++.++|.+=| ++++++
T Consensus 120 ~y~~~~~~~~~~g~~~---~~v~~~~~~~~~~~d~~~l~~~l~~~----~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~ 192 (390)
T 1d2f_A 120 AYDAFYKAIEGNQRTV---MPVALEKQADGWFCDMGKLEAVLAKP----ECKIMLLCSPQNPTGKVWTCDELEIMADLCE 192 (390)
T ss_dssp CCHHHHHHHHHTTCEE---EEEECEECSSSEECCHHHHHHHHTST----TEEEEEEESSCTTTCCCCCTTHHHHHHHHHH
T ss_pred CcHHHHHHHHHCCCEE---EEeecccCCCccccCHHHHHHHhccC----CCeEEEEeCCCCCCCcCcCHHHHHHHHHHHH
Confidence 4567888899999866 8899974 3479999999999641 1123444678999999866 555554
Q ss_pred --CCCceeccccccc-cc-----eee-eecC----CCccccccc-----cccccC-Cc--------ccC-C-C-CcccHH
Q psy13453 91 --NGPLKVGGVLRRV-YS-----SCL-VPRG----QKSLRTTVL-----FHFLFQ-HW--------QIP-L-G-RRFRAL 140 (764)
Q Consensus 91 --~~wlHVDa~l~~~-y~-----s~l-l~rd----~~~l~~~~s-----~~~d~~-d~--------tle-~-S-Rr~~AL 140 (764)
++++++|...... +. ++. +..+ -.++...+. ..+-+. +. ... . + -....+
T Consensus 193 ~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (390)
T 1d2f_A 193 RHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVL 272 (390)
T ss_dssp HTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHH
T ss_pred HcCCEEEEEccccccccCCCCCcCHHHcchhhHhhccCccHhhcccChhheEEEECCHHHHHHHHHHHhhhcccCCCCHH
Confidence 8899999964221 10 100 0000 001111111 000000 00 000 0 0 022344
Q ss_pred HHHHHHHHc--cHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEeCCCCceeEE-EEeeccccccccccccCccCCccHHH
Q psy13453 141 KLWMTLRSY--GLKGLQAYLRKHISLAKKFADLVEQ-DDRFELVCPPSMGLVC-FRLKVRFWDKLDNLFGTISFGDNDLN 216 (764)
Q Consensus 141 klWatL~~l--G~eGy~~~i~~~i~lA~~l~~~I~~-~p~~ell~~P~l~iV~-Fry~P~~~~~~~~~~~~~~~~~d~~n 216 (764)
..+++...+ +.+.+.++.++..+..+++.+.|++ .|+++++ .|+-+.+. +++... +.+ .
T Consensus 273 ~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~~~~--------------~~~--~ 335 (390)
T 1d2f_A 273 ALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQ-IPQSTYLAWLDLRPL--------------NID--D 335 (390)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCC-CCSBCSEEEEECGGG--------------CCC--H
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEe-cCCccEEEEEEcccc--------------CCC--H
Confidence 444443333 4667788888888999999999998 7888764 45555554 444210 011 2
Q ss_pred HHHHHHHH-hcCcEEEEeceeC--CeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 217 KAVYDRII-ARKVIYIVKGSFQ--DRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 217 ~~L~~~L~-~~G~~~vs~t~l~--g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
.++.++|. +.|..+....... +..++|+++.. +++++++.++.+.++.++
T Consensus 336 ~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~---~~~~l~~~l~~l~~~l~~ 388 (390)
T 1d2f_A 336 NALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC---PRSKLEKGVAGLINAIRA 388 (390)
T ss_dssp HHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS---CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC---CHHHHHHHHHHHHHHHHh
Confidence 46888888 5787655443332 34689998876 368899999888887654
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=7.8e-05 Score=81.02 Aligned_cols=217 Identities=11% Similarity=0.015 Sum_probs=127.1
Q ss_pred eeeHHHHHhhcCCCCCCeEEecCCC--CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccc---cCchhhhc-----
Q psy13453 21 IYESFKATHSLSGTPDQVRLSGLPD--SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDI---QSLNAPVS----- 90 (764)
Q Consensus 21 ~YSv~KAa~~LGl~~~~v~~Vpvd~--~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~i---Dpi~~ia~----- 90 (764)
|.++..+++..|... +.||+++ ++.+|+++|+++|++. +-+++-+-++.++|.+ +++.++++
T Consensus 125 y~~~~~~~~~~g~~~---~~v~~~~~~~~~~d~~~l~~~l~~~-----~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~ 196 (385)
T 1b5p_A 125 WVSYPEMVRFAGGVV---VEVETLPEEGFVPDPERVRRAITPR-----TKALVVNSPNNPTGAVYPKEVLEALARLAVEH 196 (385)
T ss_dssp CTHHHHHHHHTTCEE---EEEECCGGGTTCCCHHHHHTTCCTT-----EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHcCCEE---EEeecCcccCCCCCHHHHHHhcCCC-----CEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHc
Confidence 456777888889876 9999984 6789999999988642 2244455688899997 44666664
Q ss_pred CCCceeccccccc-c----cee--------e-eecCCCccc-cccccccccCC---------cccCCCCcccHHHHHHHH
Q psy13453 91 NGPLKVGGVLRRV-Y----SSC--------L-VPRGQKSLR-TTVLFHFLFQH---------WQIPLGRRFRALKLWMTL 146 (764)
Q Consensus 91 ~~wlHVDa~l~~~-y----~s~--------l-l~rd~~~l~-~~~s~~~d~~d---------~tle~SRr~~ALklWatL 146 (764)
++++++|...... | .++ + +..-.+.+- ..+...+-+.+ ..-.++-....+..+++.
T Consensus 197 ~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~ 276 (385)
T 1b5p_A 197 DFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATL 276 (385)
T ss_dssp TCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHH
T ss_pred CCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcCCcccceEEEEeCHHHHHHHHHHHhhccCCCCHHHHHHHH
Confidence 7899999864221 1 011 0 000011100 00000000000 000111233445555554
Q ss_pred HHc-----cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEE-EeeccccccccccccCccCCccHHHHHHH
Q psy13453 147 RSY-----GLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCF-RLKVRFWDKLDNLFGTISFGDNDLNKAVY 220 (764)
Q Consensus 147 ~~l-----G~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~F-ry~P~~~~~~~~~~~~~~~~~d~~n~~L~ 220 (764)
..+ |.+.+.++.++..+..+++.+.+++. ++++. .|+-+...| +. +. .+.+ ..++.
T Consensus 277 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~-~~-------------~~~~--~~~l~ 338 (385)
T 1b5p_A 277 EALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL-GLKAV-RPSGAFYVLMDT-SP-------------IAPD--EVRAA 338 (385)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCSBTTEEEEEC-TT-------------TCSS--HHHHH
T ss_pred HHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC-CCeec-CCCeeEEEEEec-CC-------------CCCC--HHHHH
Confidence 444 45556777788888889999999887 77754 444333233 22 10 0111 24678
Q ss_pred HHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 221 DRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 221 ~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
++|.+.|..+..........++|+++. ++++++++.++.|.++
T Consensus 339 ~~l~~~gv~v~~g~~f~~~~~iRis~~---~~~~~i~~~l~~l~~~ 381 (385)
T 1b5p_A 339 ERLLEAGVAVVPGTDFAAFGHVRLSYA---TSEENLRKALERFARV 381 (385)
T ss_dssp HHHHHTTEECEESGGGTCTTEEEEECC---SCHHHHHHHHHHGGGG
T ss_pred HHHHHCCeEEecccccCCCCeEEEEec---CCHHHHHHHHHHHHHH
Confidence 888888876654443322458999976 6788888888877654
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00016 Score=79.62 Aligned_cols=207 Identities=9% Similarity=0.024 Sum_probs=123.2
Q ss_pred eeeHHHH----HhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----C
Q psy13453 21 IYESFKA----THSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----N 91 (764)
Q Consensus 21 ~YSv~KA----a~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~ 91 (764)
|.|+..+ +...|+.. +.+|+| +++|+++|+++ +-+++.+.++.++|.+.|++++++ +
T Consensus 105 ~~~~~~~~~~~~~~~g~~~---~~~~~~------~~~l~~~i~~~-----~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~ 170 (412)
T 2cb1_A 105 FGQTIGLFGQVLSLMGVTV---RYVDPE------PEAVREALSAK-----TRAVFVETVANPALLVPDLEALATLAEEAG 170 (412)
T ss_dssp CHHHHHHHHHTTTTTTCEE---EEECSS------HHHHHHHCCTT-----EEEEEEESSCTTTCCCCCHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHcCCEE---EEECCC------HHHHHHHhccC-----CeEEEEeCCCCCCcccccHHHHHHHHHHcC
Confidence 4455544 44566655 777764 88999888653 224457888999999999999886 8
Q ss_pred CCceecccccc--------------------c-cc------eeeeecCCCc-cc--ccccc---------------c-c-
Q psy13453 92 GPLKVGGVLRR--------------------V-YS------SCLVPRGQKS-LR--TTVLF---------------H-F- 124 (764)
Q Consensus 92 ~wlHVDa~l~~--------------------~-y~------s~ll~rd~~~-l~--~~~s~---------------~-~- 124 (764)
+|+|+|++... + ++ ++++..++.. .. ..+.. . +
T Consensus 171 ~~li~D~~~~~~~~~~~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 250 (412)
T 2cb1_A 171 VALVVDNTFGAAGALCRPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPE 250 (412)
T ss_dssp CEEEEECGGGTTTTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHH
T ss_pred CEEEEECCCccccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHH
Confidence 99999995311 1 00 2233322110 00 00000 0 0
Q ss_pred ccCCcccC-CCCcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC-----------------Cc
Q psy13453 125 LFQHWQIP-LGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPP-----------------SM 186 (764)
Q Consensus 125 d~~d~tle-~SRr~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P-----------------~l 186 (764)
.+..+++. .+-...++..|+.+..+ +.+.+++++..++++++.+.|+++++++++..| .-
T Consensus 251 ~~r~~~~~~~g~~~~~~~a~~~~~~l--~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~ 328 (412)
T 2cb1_A 251 RVRTLGLSLCGMALSPFNAYLLFQGL--ETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGG 328 (412)
T ss_dssp HHHHHHTTTTCCCCCHHHHHHHHHHG--GGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSC
T ss_pred HHHHHHHHhcCCCCChHHhHHHHcCC--chHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCc
Confidence 01111111 12244566667766543 556788888899999999999999999866433 24
Q ss_pred eeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEec----------e-------eC-------C--ee
Q psy13453 187 GLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKG----------S-------FQ-------D--RL 240 (764)
Q Consensus 187 ~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t----------~-------l~-------g--~~ 240 (764)
++++|++ .+ ...+.+.|.+.|.+. ..+ . +. | ..
T Consensus 329 ~iv~~~~-~~-------------------~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~ 387 (412)
T 2cb1_A 329 PILTLDL-GD-------------------LERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPG 387 (412)
T ss_dssp SEEEEEC-SS-------------------HHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTT
T ss_pred eEEEEEe-CC-------------------HHHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCC
Confidence 5888876 21 124455555667654 321 0 00 1 46
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHH
Q psy13453 241 FMRFAICSSQTEESDVQLGWNEIRT 265 (764)
Q Consensus 241 ~LRi~v~np~Tt~e~i~~~l~~l~~ 265 (764)
.+|+++.-- +++++++.+.+.|++
T Consensus 388 ~iR~s~g~~-~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 388 LVRVSVGLE-DPLDLLALFEEALEA 411 (412)
T ss_dssp EEEEECCSS-CHHHHHHHHHHHHHC
T ss_pred eEEEEeccC-CHHHHHHHHHHHHhh
Confidence 899976554 458888888887753
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=97.71 E-value=9.7e-05 Score=82.56 Aligned_cols=145 Identities=14% Similarity=0.135 Sum_probs=92.7
Q ss_pred HHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCceeccccc
Q psy13453 27 ATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKVGGVLR 101 (764)
Q Consensus 27 Aa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHVDa~l~ 101 (764)
.+..+|+.. +.||.+ |+++|+++|+++ +-+++...++.++|.+.|++++++ +++++||....
T Consensus 141 ~~~~~G~~~---~~v~~~-----d~~~l~~ai~~~-----t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~ 207 (430)
T 3ri6_A 141 TLPSFGIEV---RFVDVM-----DSLAVEHACDET-----TKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMT 207 (430)
T ss_dssp HHHHTTCEE---EEECTT-----CHHHHHHHCCTT-----EEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTS
T ss_pred HHHHcCCEE---EEeCCC-----CHHHHHHhhCCC-----CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCc
Confidence 777888876 888877 899999999753 224457788999999999999886 89999998532
Q ss_pred ccc---------------------------ceeeeecCCCcccc--cccc------c---cc--cCCcccCCCCcccHHH
Q psy13453 102 RVY---------------------------SSCLVPRGQKSLRT--TVLF------H---FL--FQHWQIPLGRRFRALK 141 (764)
Q Consensus 102 ~~y---------------------------~s~ll~rd~~~l~~--~~s~------~---~d--~~d~tle~SRr~~ALk 141 (764)
.++ +++++.+....... .+.. . .. ...+....+-....+.
T Consensus 208 ~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~~~~~ 287 (430)
T 3ri6_A 208 PPYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLSPHN 287 (430)
T ss_dssp CTTTCCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCCCHHH
T ss_pred ccccCChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCCCHHH
Confidence 111 11222111111000 0000 0 00 0000001122234556
Q ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCc
Q psy13453 142 LWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSM 186 (764)
Q Consensus 142 lWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l 186 (764)
.|+.++ |.+.+..++++..++|+++++.|+++|.++-+.-|.+
T Consensus 288 a~l~l~--~l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l 330 (430)
T 3ri6_A 288 AYLQSL--GLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSL 330 (430)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTS
T ss_pred HHHHHh--hhhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCC
Confidence 676655 7788999999999999999999999999987776663
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00015 Score=77.37 Aligned_cols=98 Identities=8% Similarity=0.064 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEe-CCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEE
Q psy13453 154 LQAYLRKHISLAKKFADLVEQDDRFELV-CPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIV 232 (764)
Q Consensus 154 y~~~i~~~i~lA~~l~~~I~~~p~~ell-~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs 232 (764)
+.+.+++..+.++++.+.|++++++++. .++..+.+.+++... ...-..++.+.|.++|.++..
T Consensus 254 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~~~Gi~v~~ 318 (357)
T 3lws_A 254 RKDRMGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQ---------------AADISPKLEQVQEETGLGFVG 318 (357)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEESC---------------HHHHHHHHHHHHHHHCEESCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEEecCC---------------hHHHHHHHHHHHHhcCeEEec
Confidence 5566677788999999999999999985 677788887776421 011135778888888875432
Q ss_pred ece-eCCeeEEEEeccCCC--CCHHHHHHHHHHHHHH
Q psy13453 233 KGS-FQDRLFMRFAICSSQ--TEESDVQLGWNEIRTA 266 (764)
Q Consensus 233 ~t~-l~g~~~LRi~v~np~--Tt~e~i~~~l~~l~~~ 266 (764)
... ..+..++|+++..++ ++++.+++.++.|.++
T Consensus 319 g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~a 355 (357)
T 3lws_A 319 YLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQA 355 (357)
T ss_dssp CCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHH
T ss_pred ccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHh
Confidence 211 145678999987665 6788888888887654
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00031 Score=77.96 Aligned_cols=226 Identities=8% Similarity=-0.035 Sum_probs=123.7
Q ss_pred eeHHHHHhhcCCCCCCeEEecCCC----------CCcccHHHHHHHHHHHhhCCCCcEEEEeeCC-cccccccC---chh
Q psy13453 22 YESFKATHSLSGTPDQVRLSGLPD----------SEWLAYLTLRTIYESFRKSFLCPMCSGYCGR-TLHQDIQS---LNA 87 (764)
Q Consensus 22 YSv~KAa~~LGl~~~~v~~Vpvd~----------~~rmD~~aLe~~I~~~~~~G~~p~~VatAGT-T~~G~iDp---i~~ 87 (764)
-++..++...|... +.||+++ ++.+|+++|+++|++.+. +...+++-+.++ +++|.+=| +++
T Consensus 124 ~~~~~~~~~~G~~~---~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~-~~~~~v~l~~p~n~ptG~~~~~~~l~~ 199 (456)
T 2ez2_A 124 TTTRYHQEKNGAVF---VDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGA-ENIAYICLAVTVNLAGGQPVSMANMRA 199 (456)
T ss_dssp HHHHHHHHHTTCEE---EECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCG-GGEEEEEEESSBTTTTSBCCCHHHHHH
T ss_pred chhHHHHHHcCCEE---EEecccccccccccccccCCCCHHHHHHHHHhccc-cceeEEEEeccCCCCCCccCCHHHHHH
Confidence 34478899999876 8888873 278999999999987531 111233334344 47887644 777
Q ss_pred hhc-----CCCceecccccc-----------ccc---------------eeeeecCCCccc-c--cccc--ccc------
Q psy13453 88 PVS-----NGPLKVGGVLRR-----------VYS---------------SCLVPRGQKSLR-T--TVLF--HFL------ 125 (764)
Q Consensus 88 ia~-----~~wlHVDa~l~~-----------~y~---------------s~ll~rd~~~l~-~--~~s~--~~d------ 125 (764)
+++ ++|+++|.+... .|. -++.+.-++..- . .+-. ..+
T Consensus 200 i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~~~~gG~~~~~~~~~~~~~~ 279 (456)
T 2ez2_A 200 VRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDDEMFSSAK 279 (456)
T ss_dssp HHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSCEEEEESCHHHHHHHH
T ss_pred HHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeCcccCCCCceeEEEECCHHHHHHHH
Confidence 665 899999996321 111 111111111100 0 0000 000
Q ss_pred -c----CCcccCCCCcccHH-H-HHHHHHHccHHHH-HHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeec--
Q psy13453 126 -F----QHWQIPLGRRFRAL-K-LWMTLRSYGLKGL-QAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKV-- 195 (764)
Q Consensus 126 -~----~d~tle~SRr~~AL-k-lWatL~~lG~eGy-~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P-- 195 (764)
+ ..+.-.++-....+ . ..+.+ +.+ .+.+++..++++++.+.|++. +++++.+.....+.++...
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~a~a~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~p~~~~~~~~~~~~~~ 353 (456)
T 2ez2_A 280 ELVVVYEGMPSYGGLAGRDMEAMAIGLR-----EAMQYEYIEHRVKQVRYLGDKLKAA-GVPIVEPVGGHAVFLDARRFC 353 (456)
T ss_dssp HHHHHHTCCTTTTTCCHHHHHHHHHHHH-----HHTCHHHHHHHHHHHHHHHHHHHHT-TCCBCSSCCSSEEEEEHHHHT
T ss_pred HHHhhccCcccccCcchhHHHHHHHHHH-----HHhHHHHHHHHHHHHHHHHHHHhcC-CCccccCCCceEEEEEhHHhc
Confidence 0 00000011111111 1 11112 223 456677778888999999884 7776554444444444320
Q ss_pred cccccccccccCccCCccHH-HHHHHHHH-HhcCcEEEEece-------------eCCeeEEEEeccCCCCCHHHHHHHH
Q psy13453 196 RFWDKLDNLFGTISFGDNDL-NKAVYDRI-IARKVIYIVKGS-------------FQDRLFMRFAICSSQTEESDVQLGW 260 (764)
Q Consensus 196 ~~~~~~~~~~~~~~~~~d~~-n~~L~~~L-~~~G~~~vs~t~-------------l~g~~~LRi~v~np~Tt~e~i~~~l 260 (764)
++. +.+++ ...+.++| .+.|...+.... ..+...+|+++....+++++++.++
T Consensus 354 ~~~------------~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~ 421 (456)
T 2ez2_A 354 EHL------------TQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVA 421 (456)
T ss_dssp TTS------------CGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHHHH
T ss_pred CCC------------ChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCCCCCCHHHHHHHH
Confidence 110 12234 45667777 567775443221 1223679998887658899999999
Q ss_pred HHHHHHHHH
Q psy13453 261 NEIRTATEE 269 (764)
Q Consensus 261 ~~l~~~~~~ 269 (764)
+.|+++.++
T Consensus 422 ~~l~~~l~~ 430 (456)
T 2ez2_A 422 DGIIKLYQH 430 (456)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 999988654
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00015 Score=79.36 Aligned_cols=149 Identities=11% Similarity=0.031 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
.++.+.+.+|+. ..|++-. .....++|+|+++++..++.+..+ + +...+..|++++-+
T Consensus 71 ~~lr~aia~~~~-~~g~~~~------~~~~i~~t~G~~~al~~~~~~l~~---~------------Gd~~~~~Vlv~~P~ 128 (391)
T 3bwn_A 71 PELEDAIKDLHG-VVGNAAT------EDRYIVVGTGSTQLCQAAVHALSS---L------------ARSQPVSVVAAAPF 128 (391)
T ss_dssp HHHHHHHHHHHH-HHCSBCC------SSSEEEEEEHHHHHHHHHHHHHHH---T------------SSSSSEEEEECSSC
T ss_pred HHHHHHHHHHHH-hcCCCCC------CCCeEEEeCChHHHHHHHHHHhcC---C------------CCCCcceEEEcCCC
Confidence 677777777776 4455321 113688999999998777665421 1 00011257889999
Q ss_pred chhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHh-cC--CEE
Q psy13453 641 NSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQE-YN--IWL 717 (764)
Q Consensus 641 H~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~-~g--lwL 717 (764)
|.+...+++..|.+++.+++|.++ ++ . ..+-+|+.+..++.||.+-+ +| |++ |+ +|+
T Consensus 129 y~~~~~~~~~~g~~~~~~~~d~~~-l~---------~-----~~~k~v~l~~p~NPtG~~~~--~l---~~~~~~~~~~i 188 (391)
T 3bwn_A 129 YSTYVEETTYVRSGMYKWEGDAWG-FD---------K-----KGPYIELVTSPNNPDGTIRE--TV---VNRPDDDEAKV 188 (391)
T ss_dssp CTHHHHHHHTTCBTTEEEEEESTT-CC---------C-----CSCEEEEEESSCTTTCCCCC--CC---C-----CCCEE
T ss_pred chhHHHHHHHcCCeEEEecCCHHH-cC---------C-----CCCEEEEECCCCCCCchhHH--HH---HHHhhcCCCEE
Confidence 999999999999999999987543 22 0 12446767888999999975 44 444 55 999
Q ss_pred EEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 718 HVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 718 HVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
++|.+|+.. .+. .+......+-+..++||.++.|
T Consensus 189 i~De~y~~~-----~~~-~l~~~~~~~i~~~S~SK~~g~~ 222 (391)
T 3bwn_A 189 IHDFAYYWP-----HYT-PITRRQDHDIMLFTFSKITGHA 222 (391)
T ss_dssp EEECTTCST-----TTS-CCCCCBCCSEEEEEHHHHHSCG
T ss_pred EEeCCCCCC-----CCC-ccccCCCCeEEEEechhhcCCC
Confidence 999999741 111 1111223467888999988744
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00035 Score=75.78 Aligned_cols=217 Identities=9% Similarity=0.019 Sum_probs=124.9
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCC-CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchh---hh------
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPD-SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNA---PV------ 89 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~-~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~---ia------ 89 (764)
.|.++..++..+|... +.||+++ ++.+|+++|+++|++. +-+++-+.++.++|.+=|.++ ++
T Consensus 133 ~~~~~~~~~~~~g~~~---~~v~~~~~~~~~d~~~l~~~l~~~-----~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~ 204 (398)
T 3ele_A 133 YFPEYKVFVNAAGARL---VEVPADTEHFQIDFDALEERINAH-----TRGVIINSPNNPSGTVYSEETIKKLSDLLEKK 204 (398)
T ss_dssp CCTHHHHHHHHTTCEE---EEECCCTTTSSCCHHHHHHTCCTT-----EEEEEECSSCTTTCCCCCHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHcCCEE---EEEecCCcCCcCCHHHHHHHhCcC-----CCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhh
Confidence 4667888999999877 9999985 6799999999998642 224445678999999977444 32
Q ss_pred -----cCCCceeccccccc-cce-------------eeeecCCCccc-cccccccccCCccc----------------CC
Q psy13453 90 -----SNGPLKVGGVLRRV-YSS-------------CLVPRGQKSLR-TTVLFHFLFQHWQI----------------PL 133 (764)
Q Consensus 90 -----~~~wlHVDa~l~~~-y~s-------------~ll~rd~~~l~-~~~s~~~d~~d~tl----------------e~ 133 (764)
.++++++|...... |.+ +++..-.+.+- .-+...+-+....+ .+
T Consensus 205 ~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (398)
T 3ele_A 205 SKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAELYAAVCGAGRALG 284 (398)
T ss_dssp HHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTSSCTTTCCEEEECCTTSTTHHHHHHHHHHHHHHTT
T ss_pred hhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcCCCccceeEEEEEcchhhhHHHHHHHHHHHhhhcc
Confidence 25788999864211 100 01100011110 00000000000000 00
Q ss_pred CCcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCcee-EEEEeeccccccccccccCccCCc
Q psy13453 134 GRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGL-VCFRLKVRFWDKLDNLFGTISFGD 212 (764)
Q Consensus 134 SRr~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~i-V~Fry~P~~~~~~~~~~~~~~~~~ 212 (764)
.-....+..++....+-... ..++..+..+++.+.|++. ++++.. |+-+. +.++.. ..
T Consensus 285 ~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~----------------~~ 343 (398)
T 3ele_A 285 YVCAPSLFQKMIVKCQGATG---DINAYKENRDLLYEGLTRI-GYHCFK-PDGAFYMFVKAL----------------ED 343 (398)
T ss_dssp CCCSCHHHHHHHTTCTTCCC---CHHHHHHHHHHHHHHHHHH-TCCEEC-CSBSSEEEEECS----------------SS
T ss_pred ccCCCHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHHHc-CCeecC-CCeeEEEEEEcC----------------CC
Confidence 11112233333322221111 2455566777888888876 677654 44444 444431 11
Q ss_pred cHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 213 NDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 213 d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
+ ..++.+.|.+.|..+..........++|+++. +++++++.+++.|+++.+++
T Consensus 344 ~--~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~e~i~~~l~~l~~~l~~~ 396 (398)
T 3ele_A 344 D--SNAFCEKAKEEDVLIVAADGFGCPGWVRISYC---VDREMIKHSMPAFEKIYKKY 396 (398)
T ss_dssp C--HHHHHHHHHTTTEECEESGGGTCTTEEEEECC---SCHHHHHHHHHHHHHHHHHH
T ss_pred C--HHHHHHHHHHCCEEEeCccccCCCCeEEEEec---CCHHHHHHHHHHHHHHHHHh
Confidence 1 24677888888976655544444568999875 58999999999999887664
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00049 Score=74.09 Aligned_cols=216 Identities=17% Similarity=0.094 Sum_probs=126.1
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccC---chhhhc-----C
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQS---LNAPVS-----N 91 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDp---i~~ia~-----~ 91 (764)
.|.++..+++.+|... +.+|+++.+.+|+++|+++|++.. -+++-+.++.++|.+=| ++++++ +
T Consensus 120 ~y~~~~~~~~~~g~~~---~~~~~~~~~~~d~~~l~~~l~~~~-----~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~ 191 (376)
T 2dou_A 120 AYPSYFGAARVASLRT---FLIPLREDGLADLKAVPEGVWREA-----KVLLLNYPNNPTGAVADWGYFEEALGLARKHG 191 (376)
T ss_dssp CCHHHHHHHHHTTCEE---EEECBCTTSSBCGGGSCHHHHHHE-----EEEEECSSCTTTCCCCCHHHHHHHHHHHHHTT
T ss_pred CcHhHHHHHHHcCCEE---EEeeCCCCCCCCHHHHHHhhccCc-----eEEEECCCCCCcCccCCHHHHHHHHHHHHHcC
Confidence 4567888899999876 889986566899999999997532 24444568889999865 444443 8
Q ss_pred CCceeccccccc-cc----eeeeecC--CC-----ccccccc-----cccccCCc---------ccCCCCcccHHHHHHH
Q psy13453 92 GPLKVGGVLRRV-YS----SCLVPRG--QK-----SLRTTVL-----FHFLFQHW---------QIPLGRRFRALKLWMT 145 (764)
Q Consensus 92 ~wlHVDa~l~~~-y~----s~ll~rd--~~-----~l~~~~s-----~~~d~~d~---------tle~SRr~~ALklWat 145 (764)
+++++|...... +. +++-.-+ .. ++...+. ..+-+.+. ....+-....+..+++
T Consensus 192 ~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~ 271 (376)
T 2dou_A 192 LWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGSEEALARLERVKGVIDFNQYAGVLRMG 271 (376)
T ss_dssp CEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEECHHHHHHHHHHHHHHCCCSCHHHHHHH
T ss_pred CEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChhheeEEEecCHHHHHHHHHHHHhcccCCCHHHHHHH
Confidence 899999864211 11 1000000 00 0000010 00000000 0000011223333333
Q ss_pred HHHc--cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCcee-EEEEeeccccccccccccCccCCccHHHHHHHHH
Q psy13453 146 LRSY--GLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGL-VCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDR 222 (764)
Q Consensus 146 L~~l--G~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~i-V~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~ 222 (764)
...+ +.+.+.++.++..+..+++.+.|++. +++. .|+.+. +.+++. . ..+ ..++.++
T Consensus 272 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~-~~~~~~~~~~~~~-~--------------~~~--~~~~~~~ 331 (376)
T 2dou_A 272 VEALKTPKEVVRGYARVYRERALGMAEALKGV--LSLL-PPRATMYLWGRLP-E--------------GVD--DLEFGLR 331 (376)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTT--SEEC-CCCBSSEEEEECC-T--------------TCC--HHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHh--cCcc-CCCeeEEEEEECC-C--------------CCC--HHHHHHH
Confidence 3333 46778888888889999999999987 7765 444443 445542 1 111 2468888
Q ss_pred HHhcCcEEEEeceeC--CeeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 223 IIARKVIYIVKGSFQ--DRLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 223 L~~~G~~~vs~t~l~--g~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
|.++|..+....... +..++|+++.. ++++++.+++.|+++
T Consensus 332 l~~~gi~v~~g~~f~~~~~~~~Ris~~~---~~~~i~~~l~~l~~~ 374 (376)
T 2dou_A 332 LVERGVALAPGRGFGPGGKGFVRIALVR---PLEELLEAAKRIREA 374 (376)
T ss_dssp HHHTTEECEEGGGGCGGGTTEEEEECCS---CHHHHHHHHHHHHHT
T ss_pred HHHCCEEEcCchhhCCCCCCeEEEEecC---CHHHHHHHHHHHHHH
Confidence 888887655433322 34689998764 688999999888764
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00029 Score=77.07 Aligned_cols=233 Identities=11% Similarity=0.041 Sum_probs=132.2
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCC------------CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCccccccc---C
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPD------------SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQ---S 84 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~------------~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iD---p 84 (764)
.|.++..++...|... +.+|++. ++++|+++|+++++++ +-+++-+.++.++|.+= +
T Consensus 124 ~~~~~~~~~~~~g~~~---~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~~-----~~~v~~~~p~nptG~~~~~~~ 195 (422)
T 3fvs_A 124 FFDCYEPMTMMAGGRP---VFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSR-----TKALVLNTPNNPLGKVFSREE 195 (422)
T ss_dssp CCTTHHHHHHHTTCEE---EEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCTT-----EEEEEEESSCTTTCCCCCHHH
T ss_pred CchhhHHHHHHcCCEE---EEEecccccccccccccccCCCCCHHHHHhhcCCC-----ceEEEECCCCCCCCcCCCHHH
Confidence 4567888899999876 8999875 4589999999988642 22444556888999986 4
Q ss_pred chhhhc-----CCCceeccccccc-cc-----eeeeecC--CC-----ccccccc-----cccccCC---------cccC
Q psy13453 85 LNAPVS-----NGPLKVGGVLRRV-YS-----SCLVPRG--QK-----SLRTTVL-----FHFLFQH---------WQIP 132 (764)
Q Consensus 85 i~~ia~-----~~wlHVDa~l~~~-y~-----s~ll~rd--~~-----~l~~~~s-----~~~d~~d---------~tle 132 (764)
++++++ ++++++|...... |. ++.-... .. ++...|. ..+-... ..-.
T Consensus 196 l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~ 275 (422)
T 3fvs_A 196 LELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQN 275 (422)
T ss_dssp HHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEECCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCccceEEEEEeCHHHHHHHHHHHhh
Confidence 666654 8999999964311 10 1000000 00 0000010 0000000 0000
Q ss_pred CCCcccHHHHHHHHHHc---------cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccc
Q psy13453 133 LGRRFRALKLWMTLRSY---------GLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDN 203 (764)
Q Consensus 133 ~SRr~~ALklWatL~~l---------G~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~ 203 (764)
.+-....+..++....+ ..+.+.++.++..+..+++.+.|++. +++++.+.....+.+.+...... ...
T Consensus 276 ~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~-~~~ 353 (422)
T 3fvs_A 276 SVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GLKPIIPQGSYFLITDISDFKRK-MPD 353 (422)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBCSBSSEEEEECHHHHHH-CCC
T ss_pred ccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCCeeeEEEEechhhccc-ccc
Confidence 01122334444444433 34567788888889999999999987 88876654444444444211000 000
Q ss_pred cccCccCCccHHHHHHHHHHHh-cCcEEEEecee-------CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13453 204 LFGTISFGDNDLNKAVYDRIIA-RKVIYIVKGSF-------QDRLFMRFAICSSQTEESDVQLGWNEIRTATE 268 (764)
Q Consensus 204 ~~~~~~~~~d~~n~~L~~~L~~-~G~~~vs~t~l-------~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~ 268 (764)
......+....++.++|.+ .|.++...... .+..++|++++. ++++++.+++.|+++.+
T Consensus 354 ---~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~---~~e~i~~~l~~l~~~l~ 420 (422)
T 3fvs_A 354 ---LPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK---DEATLQAMDEKLRKWKV 420 (422)
T ss_dssp ---CCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCC---CHHHHHHHHHHHHHHHH
T ss_pred ---cccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEecC---CHHHHHHHHHHHHHHHh
Confidence 0000011113456666554 68755544433 346799998765 89999999999988754
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00029 Score=77.11 Aligned_cols=206 Identities=12% Similarity=0.091 Sum_probs=119.2
Q ss_pred eeeeHHHHH----hhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----
Q psy13453 20 LIYESFKAT----HSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS----- 90 (764)
Q Consensus 20 ~~YSv~KAa----~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~----- 90 (764)
.|.++..++ ...|+.. +.+|++ |+++|+++|+++ +-+++.+.++.++|.+.|++++++
T Consensus 113 ~~~~~~~~~~~~~~~~g~~~---~~~~~~-----d~~~l~~~i~~~-----~~~v~~~~~~nptG~~~~l~~i~~l~~~~ 179 (398)
T 1gc0_A 113 LYGCTFAFLHHGIGEFGVKL---RHVDMA-----DLQALEAAMTPA-----TRVIYFESPANPNMHMADIAGVAKIARKH 179 (398)
T ss_dssp CCSHHHHHHHHTGGGGTCEE---EEECTT-----CHHHHHHHCCTT-----EEEEEEESSCTTTCCCCCHHHHHHHHGGG
T ss_pred CchhHHHHHHHHHHHcCCEE---EEECCC-----CHHHHHHhcCCC-----CeEEEEECCCCCCcccccHHHHHHHHHHc
Confidence 455555554 6667755 777764 899999998752 224456788899999999999886
Q ss_pred CCCceeccccccc-------c--------------------ceeeeecCCCccccccccccccCCcccCCCCcccHHHHH
Q psy13453 91 NGPLKVGGVLRRV-------Y--------------------SSCLVPRGQKSLRTTVLFHFLFQHWQIPLGRRFRALKLW 143 (764)
Q Consensus 91 ~~wlHVDa~l~~~-------y--------------------~s~ll~rd~~~l~~~~s~~~d~~d~tle~SRr~~ALklW 143 (764)
++++|+|+..... + +++++.++. .+...+. .....+ .+-....+..|
T Consensus 180 ~~~li~D~~~~~~~~~~~~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~-~~~~~~~----~~~~~~-~~~~~~~~~~~ 253 (398)
T 1gc0_A 180 GATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQA-LVDRIRL----QGLKDM-TGAVLSPHDAA 253 (398)
T ss_dssp TCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHH-HHHHHHH----THHHHH-TCCCCCHHHHH
T ss_pred CCEEEEECCCcccccCCchhhCceEEEECCccccCCCCCCeEEEEEEChH-HHHHHHH----HHhhcc-CCCCCCHHHHH
Confidence 8999999953111 0 122222111 0000000 000000 11123456667
Q ss_pred HHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe--------------CC---CCceeEEEEeecccccccccccc
Q psy13453 144 MTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELV--------------CP---PSMGLVCFRLKVRFWDKLDNLFG 206 (764)
Q Consensus 144 atL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell--------------~~---P~l~iV~Fry~P~~~~~~~~~~~ 206 (764)
+.++.+ +.+..++++..+.++++++.|++++.++-+ .+ ...++++|++..
T Consensus 254 ~~~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~----------- 320 (398)
T 1gc0_A 254 LLMRGI--KTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG----------- 320 (398)
T ss_dssp HHHHHH--TTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETT-----------
T ss_pred HHHhcc--chHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECC-----------
Confidence 766544 456778888889999999999887765432 11 135677776531
Q ss_pred CccCCccHHHHHHHHHHHhcCcEEEEe--c------------e----------eCC--eeEEEEeccCCCCCHHHHHHHH
Q psy13453 207 TISFGDNDLNKAVYDRIIARKVIYIVK--G------------S----------FQD--RLFMRFAICSSQTEESDVQLGW 260 (764)
Q Consensus 207 ~~~~~~d~~n~~L~~~L~~~G~~~vs~--t------------~----------l~g--~~~LRi~v~np~Tt~e~i~~~l 260 (764)
. ...+.+.+.+.|...... . . ..| ..++|+++.. .+++++++.+.
T Consensus 321 -----~---~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~-~~~~~~i~~l~ 391 (398)
T 1gc0_A 321 -----G---IGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGL-EDIDDLLADVQ 391 (398)
T ss_dssp -----H---HHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCS-SCHHHHHHHHH
T ss_pred -----C---HHHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCc-CCHHHHHHHHH
Confidence 1 123344444444432220 0 0 011 3689998876 56788888888
Q ss_pred HHHHHH
Q psy13453 261 NEIRTA 266 (764)
Q Consensus 261 ~~l~~~ 266 (764)
+.|+++
T Consensus 392 ~al~~~ 397 (398)
T 1gc0_A 392 QALKAS 397 (398)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 887654
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00053 Score=73.15 Aligned_cols=96 Identities=8% Similarity=0.012 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEe-CCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEe
Q psy13453 155 QAYLRKHISLAKKFADLVEQDDRFELV-CPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVK 233 (764)
Q Consensus 155 ~~~i~~~i~lA~~l~~~I~~~p~~ell-~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~ 233 (764)
.+.+++..+.++++.+.|++++++++. .++..+.+.+++..+ ...-...+.++|.++|..+...
T Consensus 257 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~l~~~GV~v~~g 321 (359)
T 3pj0_A 257 IGKMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFHVYFENS---------------ADEIGAILTKIQDETGVGISGY 321 (359)
T ss_dssp GGGHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEESSC---------------HHHHHHHHHHHHHHHCEECCSC
T ss_pred HHHhHHHHHHHHHHHHHHhhCCCceeeccCCcceEEEEEecCc---------------cchhHHHHHHHHHhcCcEecCC
Confidence 366777888999999999999999986 566777777766421 0111357888899889754432
Q ss_pred c--eeCCeeEEEEeccCCC--CCHHHHHHHHHHHHH
Q psy13453 234 G--SFQDRLFMRFAICSSQ--TEESDVQLGWNEIRT 265 (764)
Q Consensus 234 t--~l~g~~~LRi~v~np~--Tt~e~i~~~l~~l~~ 265 (764)
. ...+..++|+++..++ .+.+.+++.++.|.+
T Consensus 322 ~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~ 357 (359)
T 3pj0_A 322 LQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEK 357 (359)
T ss_dssp CEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHH
T ss_pred ccccCCCceEEEEEecCccccCCHHHHHHHHHHHHh
Confidence 2 2356788999887665 467888888887765
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00069 Score=73.56 Aligned_cols=199 Identities=11% Similarity=0.075 Sum_probs=116.4
Q ss_pred HHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCceecccc
Q psy13453 26 KATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKVGGVL 100 (764)
Q Consensus 26 KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHVDa~l 100 (764)
+.+...|... +.+|.+ |+++|+++|+++ +-+++.+.++.++|.+-|++++++ ++++++|...
T Consensus 110 ~~~~~~g~~~---~~~~~~-----d~~~l~~~i~~~-----~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~ 176 (386)
T 1cs1_A 110 SLAKRGCYRV---LFVDQG-----DEQALRAALAEK-----PKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTF 176 (386)
T ss_dssp HHHTTTSCEE---EEECTT-----CHHHHHHHHHTC-----CSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTT
T ss_pred HHHHhcCCEE---EEeCCC-----CHHHHHHhhccC-----CcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCC
Confidence 3456677765 778775 899999999742 235566779999999999999876 8999999964
Q ss_pred ccccc---------------------------eeeeecCCCccccccccccccCCcccCCCCcccHHHHHHHHHHccHHH
Q psy13453 101 RRVYS---------------------------SCLVPRGQKSLRTTVLFHFLFQHWQIPLGRRFRALKLWMTLRSYGLKG 153 (764)
Q Consensus 101 ~~~y~---------------------------s~ll~rd~~~l~~~~s~~~d~~d~tle~SRr~~ALklWatL~~lG~eG 153 (764)
..... ++++.++++... .+ ..+....+-....+..|+.++. .+.
T Consensus 177 ~~~~~~~~~~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~-~l------~~~~~~~~~~~~~~~~~~~~~~--l~~ 247 (386)
T 1cs1_A 177 LSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVT-EL------AWWANNIGVTGGAFDSYLLLRG--LRT 247 (386)
T ss_dssp TCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHH-HH------HHHHHHHTCBCCHHHHHHHHHH--HTT
T ss_pred cccccCCccccCceEEEEcCcccccCCCCceeEEEEeCcHHHHH-HH------HHHHHhcCCCCCHHHHHHHHhc--ccH
Confidence 21110 111111100000 00 0000000111233344444332 234
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC-----------------CceeEEEEeeccccccccccccCccCCccHHH
Q psy13453 154 LQAYLRKHISLAKKFADLVEQDDRFELVCPP-----------------SMGLVCFRLKVRFWDKLDNLFGTISFGDNDLN 216 (764)
Q Consensus 154 y~~~i~~~i~lA~~l~~~I~~~p~~ell~~P-----------------~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n 216 (764)
+.++.++..+.++++.+.+++.+.+.-+.-| ..++++|++. +. .
T Consensus 248 ~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~---~ 308 (386)
T 1cs1_A 248 LVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELD----------------GD---E 308 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEES----------------SC---H
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEEC----------------CC---H
Confidence 5667788888899999999998776544222 2567778653 11 2
Q ss_pred HHHHHHHHhcCcEEEEe-ce------------e-------------CCeeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 217 KAVYDRIIARKVIYIVK-GS------------F-------------QDRLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 217 ~~L~~~L~~~G~~~vs~-t~------------l-------------~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
..+.+.|.+.|.+.... .. . -...++|+++.. ..++++++.+.+.++++
T Consensus 309 ~~~~~~l~~~gi~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~-~~~~~~i~~l~~al~~~ 383 (386)
T 1cs1_A 309 QTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI-EDGEDLIADLENGFRAA 383 (386)
T ss_dssp HHHHHHHHTCSSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCS-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEcc-CCHHHHHHHHHHHHHHh
Confidence 35667777788744310 00 0 013689998776 55677777777776654
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00039 Score=75.96 Aligned_cols=221 Identities=9% Similarity=0.011 Sum_probs=129.1
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCC-CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc----CCCc
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLP-DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS----NGPL 94 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd-~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~----~~wl 94 (764)
.|.++..++..+|... +.||++ +++.+|+++|+++|..... ++-+++ ++.++|.+-|++++++ ++++
T Consensus 87 ~~~~~~~~~~~~G~~~---~~v~~~~~~~~~d~~~l~~~i~~~~~--~tk~v~---~~~~~G~~~~~~~i~~la~~~~~v 158 (377)
T 3ju7_A 87 TFPATPLAAIWCGLEP---YFIDISIDDWYMDKTVLWDKIEELKE--EVAIVV---PYATFGSWMNLEEYEELEKKGVPV 158 (377)
T ss_dssp SCTHHHHHHHHTTCEE---EEECBCTTTCSBCHHHHHHHHHHHGG--GEEEEC---CBCGGGBCCCCHHHHHHHHTTCCB
T ss_pred CcHHHHHHHHHcCCEE---EEEecCCccCCcCHHHHHHHHhcCCC--CceEEE---EECCCCCccCHHHHHHHHhcCCEE
Confidence 4677888999999877 999998 6889999999999943210 111322 4567899989988775 8899
Q ss_pred eeccccc--ccc---------ceeeeec--CCCccccc---c--ccccc-------cCCcc--------cCCCC-cccHH
Q psy13453 95 KVGGVLR--RVY---------SSCLVPR--GQKSLRTT---V--LFHFL-------FQHWQ--------IPLGR-RFRAL 140 (764)
Q Consensus 95 HVDa~l~--~~y---------~s~ll~r--d~~~l~~~---~--s~~~d-------~~d~t--------le~SR-r~~AL 140 (764)
|+|++.. ..+ +.+.++. ..+.+... + ..+.+ +.+++ ..+.+ +...+
T Consensus 159 i~D~a~a~g~~~~~~~~g~~~~d~~~~S~~~~K~l~~g~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~ 238 (377)
T 3ju7_A 159 VVDAAPGFGLMNGGMHYGQDFSGMIIYSFHATKPFGIGEGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEY 238 (377)
T ss_dssp EEECTTCTTCEETTEETTTTCSSEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHH
T ss_pred EEECCCccCCeECCEeccCCCCcEEEEECCCCCcCCCCCcEEEEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHH
Confidence 9999641 111 1011110 01111100 0 00000 11111 11222 55566
Q ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC-C-----ceeEEEEeeccccccccccccCccCCccH
Q psy13453 141 KLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPP-S-----MGLVCFRLKVRFWDKLDNLFGTISFGDND 214 (764)
Q Consensus 141 klWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P-~-----l~iV~Fry~P~~~~~~~~~~~~~~~~~d~ 214 (764)
..|+.+.. .+.+.+++++..++++++.+.|++++++.+...| . ...+.++.. . ..+
T Consensus 239 ~aa~~~~~--l~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------------~~~- 300 (377)
T 3ju7_A 239 AAAIGIAT--MKKWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCP-E--------------EVR- 300 (377)
T ss_dssp HHHHHHHH--HHTHHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECC-T--------------TSC-
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeC-C--------------hhh-
Confidence 66665554 3778889999999999999999998754221111 1 112334321 0 000
Q ss_pred HHHHHHHHHHhcCcEEEEec--eeC-------------------CeeEEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13453 215 LNKAVYDRIIARKVIYIVKG--SFQ-------------------DRLFMRFAICSSQTEESDVQLGWNEIRTATE 268 (764)
Q Consensus 215 ~n~~L~~~L~~~G~~~vs~t--~l~-------------------g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~ 268 (764)
..++.+.|.++|...-... .++ ....||+ -+++.+++++++.+++.|+++.+
T Consensus 301 -~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~l-p~~~~~t~~di~~v~~~l~~~~~ 373 (377)
T 3ju7_A 301 -NKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSL-PLWEGMTKEIVEQIVICLGQKVV 373 (377)
T ss_dssp -HHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEE-CCCTTCCHHHHHHHHHHHTC---
T ss_pred -HHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEEC-CCCCCCCHHHHHHHHHHHHHHHh
Confidence 2478889998886322111 110 1357888 47888999999999999877653
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00049 Score=75.60 Aligned_cols=229 Identities=9% Similarity=0.014 Sum_probs=128.5
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCC----------CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccC---ch
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPD----------SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQS---LN 86 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~----------~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDp---i~ 86 (764)
.+.++..+++..|... +.||++. ++.+|+++|+++|++. +-+++-+.++.++|.+=| ++
T Consensus 134 ~y~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~-----~~~v~~~~p~nptG~~~~~~~l~ 205 (429)
T 1yiz_A 134 FFDCYEPMVKAAGGIP---RFIPLKPNKTGGTISSADWVLDNNELEALFNEK-----TKMIIINTPHNPLGKVMDRAELE 205 (429)
T ss_dssp CCTTHHHHHHHTTCEE---EEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTT-----EEEEEEESSCTTTCCCCCHHHHH
T ss_pred CchhHHHHHHHcCCEE---EEEeCCcccccccccccCcccCHHHHHHHhccC-----ceEEEECCCCCCCCccCCHHHHH
Confidence 4567788888888866 8899975 4689999999998632 223445678889999864 66
Q ss_pred hhhc-----CCCceeccccccc-c-----ceeeeec---CCC----ccccccc-----ccc-----c----c---C-Ccc
Q psy13453 87 APVS-----NGPLKVGGVLRRV-Y-----SSCLVPR---GQK----SLRTTVL-----FHF-----L----F---Q-HWQ 130 (764)
Q Consensus 87 ~ia~-----~~wlHVDa~l~~~-y-----~s~ll~r---d~~----~l~~~~s-----~~~-----d----~---~-d~t 130 (764)
++++ ++++++|...... | .++.-.. +.. ++...+. ..+ + + . ..+
T Consensus 206 ~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~ 285 (429)
T 1yiz_A 206 VVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCV 285 (429)
T ss_dssp HHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEESCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCcceEEEEeCHHHHHHHHHHHhhcc
Confidence 6654 8899999964321 1 0110000 000 0000010 000 0 0 0 001
Q ss_pred cCCCCcccHHHHHHHHHHc----c--HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeecccccccccc
Q psy13453 131 IPLGRRFRALKLWMTLRSY----G--LKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNL 204 (764)
Q Consensus 131 le~SRr~~ALklWatL~~l----G--~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~ 204 (764)
...+ ......+..+|... | .+.+.++.++..+..+++.+.|++. ++++..+..-..+.+++...... .+
T Consensus 286 ~~~~-~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~~--~~- 360 (429)
T 1yiz_A 286 YTCA-TPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV-GMNPTVPQGGYFMVADWSSLDSK--VD- 360 (429)
T ss_dssp CCCC-HHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHH-TCEEEECSBSSEEEEECCSSCTT--TT-
T ss_pred cCCC-hHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEEccccccc--cc-
Confidence 1111 11111233344441 4 5557777788888899999999887 78876544344666665321000 00
Q ss_pred ccCccCCccHHHHHHHHHHH-hcCcEEEEeceeC-------CeeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 205 FGTISFGDNDLNKAVYDRII-ARKVIYIVKGSFQ-------DRLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 205 ~~~~~~~~d~~n~~L~~~L~-~~G~~~vs~t~l~-------g~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
. .......-..++.++|. +.|..+....... +..++|+++.+ ++++++.+++.|+++
T Consensus 361 ~--~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~---~~e~i~~~l~~l~~~ 425 (429)
T 1yiz_A 361 L--TQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFK---KDENLQKAAEILRKW 425 (429)
T ss_dssp C--CSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECCS---CHHHHHHHHHHHHHH
T ss_pred c--cccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEecC---CHHHHHHHHHHHHHh
Confidence 0 00000011356777776 6787544332221 25689998873 789999999999875
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0007 Score=75.26 Aligned_cols=104 Identities=18% Similarity=0.191 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHH-HhcCcEEEEece
Q psy13453 157 YLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRI-IARKVIYIVKGS 235 (764)
Q Consensus 157 ~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L-~~~G~~~vs~t~ 235 (764)
.+++..+.++++.+.|++ ++++++.+.....+.++... -.... ..... -..++.++| .+.|..+.....
T Consensus 324 ~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~--~~~~l~~~L~~~~gv~v~~~g~ 393 (467)
T 1ax4_A 324 YLHYRIGQVKYLGDRLRE-AGIPIQYPTGGHAVFVDCKK-LVPQI------PGDQF--PAQAVINALYLESGVRAVEIGS 393 (467)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTCCBCSSCCSSEEEEESTT-TCTTS------CGGGC--HHHHHHHHHHHHHCEECEEESH
T ss_pred HHHHHHHHHHHHHHHHHh-CCCCcccCCCceEEEEehhh-hcccc------ccCCC--CHHHHHHHHHHhcCceeeecCc
Confidence 455666788899999988 68887655444445454210 00000 00011 135688888 778876544111
Q ss_pred e-------CC------eeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 236 F-------QD------RLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 236 l-------~g------~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
. .+ ..++|+++....+++++++.+++.|+++.+++
T Consensus 394 ~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~ 441 (467)
T 1ax4_A 394 FLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKF 441 (467)
T ss_dssp HHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHH
T ss_pred cccccccccccccccccceEEEecccccCCHHHHHHHHHHHHHHHHhh
Confidence 0 01 36899988766689999999999999887664
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00065 Score=74.78 Aligned_cols=213 Identities=11% Similarity=0.076 Sum_probs=126.4
Q ss_pred eeeHHH----HHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc------
Q psy13453 21 IYESFK----ATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS------ 90 (764)
Q Consensus 21 ~YSv~K----Aa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~------ 90 (764)
|.+... ++...|... +.||++ |+++|+++|+++ +-+++.+.++.++|.+-|++++++
T Consensus 111 y~~~~~~~~~~~~~~g~~~---~~v~~~-----d~~~l~~~i~~~-----t~~v~l~~p~NptG~v~~l~~i~~la~~~~ 177 (404)
T 1e5e_A 111 YGCTHALFEHALTKFGIQV---DFINTA-----IPGEVKKHMKPN-----TKIVYFETPANPTLKIIDMERVCKDAHSQE 177 (404)
T ss_dssp CHHHHHHHHTHHHHTTCEE---EEECTT-----STTHHHHHCCTT-----EEEEEEESSCTTTCCCCCHHHHHHHHHTST
T ss_pred chhHHHHHHHHHHHcCCEE---EEECCC-----CHHHHHHhcCCC-----CcEEEEECCCCCCCcccCHHHHHHHHHhhc
Confidence 445555 688888876 888876 889999988642 224456778999999999999764
Q ss_pred CCCceecccccccc-------c-eeeeecCCCcccc------cccc-c---cc--cCCcccCC-CCcccHHHHHHHHHHc
Q psy13453 91 NGPLKVGGVLRRVY-------S-SCLVPRGQKSLRT------TVLF-H---FL--FQHWQIPL-GRRFRALKLWMTLRSY 149 (764)
Q Consensus 91 ~~wlHVDa~l~~~y-------~-s~ll~rd~~~l~~------~~s~-~---~d--~~d~tle~-SRr~~ALklWatL~~l 149 (764)
++++++|....... + .+++..-.+.+.. .+-. . .+ +....... +-....+..|+++..+
T Consensus 178 ~~~li~De~~~~~~~~~~~~~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l 257 (404)
T 1e5e_A 178 GVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGL 257 (404)
T ss_dssp TCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHH
T ss_pred CCEEEEECCCchhhhCCccccCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhH
Confidence 57899999542111 1 1111111111110 0000 0 00 00011111 1234556778777766
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC-----------------CceeEEEEeeccccccccccccCccCCc
Q psy13453 150 GLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPP-----------------SMGLVCFRLKVRFWDKLDNLFGTISFGD 212 (764)
Q Consensus 150 G~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P-----------------~l~iV~Fry~P~~~~~~~~~~~~~~~~~ 212 (764)
- .+..++++..+.++++.+.+++.+.++-+.-| .-++++|++. +.
T Consensus 258 ~--~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~----------------~~ 319 (404)
T 1e5e_A 258 S--TLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILK----------------SG 319 (404)
T ss_dssp T--THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEET----------------TH
T ss_pred h--HHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeC----------------CC
Confidence 3 35667888889999999999988765422211 1567778542 11
Q ss_pred cHHHHHHHHHHHhcCcEEEEecee-------------------------CC--eeEEEEeccCCCCCHHHHHHHHHHHHH
Q psy13453 213 NDLNKAVYDRIIARKVIYIVKGSF-------------------------QD--RLFMRFAICSSQTEESDVQLGWNEIRT 265 (764)
Q Consensus 213 d~~n~~L~~~L~~~G~~~vs~t~l-------------------------~g--~~~LRi~v~np~Tt~e~i~~~l~~l~~ 265 (764)
...+.+.+.+.|.+.. ...+ .| ..++|+++.. ++++.+++.|++
T Consensus 320 ---~~~~~~~l~~~~i~~~-~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~-----e~~~~li~~l~~ 390 (404)
T 1e5e_A 320 ---FEGAKKLLDNLKLITL-AVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI-----EDADELIADFKQ 390 (404)
T ss_dssp ---HHHHHHHHHTCSSSEE-SSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS-----SCHHHHHHHHHH
T ss_pred ---HHHHHHHHHhCCCcee-ccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC-----CCHHHHHHHHHH
Confidence 1234455556665222 1111 22 4689999877 789999999999
Q ss_pred HHHHHHcc
Q psy13453 266 ATEEVLRG 273 (764)
Q Consensus 266 ~~~~i~~~ 273 (764)
+.+.+++.
T Consensus 391 al~~~~~~ 398 (404)
T 1e5e_A 391 GLDALLRS 398 (404)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHh
Confidence 88776653
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00017 Score=78.92 Aligned_cols=215 Identities=13% Similarity=0.098 Sum_probs=119.5
Q ss_pred eeeeHHHHH----hhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----
Q psy13453 20 LIYESFKAT----HSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS----- 90 (764)
Q Consensus 20 ~~YSv~KAa----~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~----- 90 (764)
.|.++.+++ ...|... +.+|++ |+++|+++|+++ +-+++.+.++.++|.+.|++++++
T Consensus 112 ~~~~~~~~~~~~~~~~g~~~---~~v~~~-----d~~~l~~~i~~~-----~~~v~~~~~~nptG~~~~l~~i~~l~~~~ 178 (398)
T 2rfv_A 112 IYGCTHAFLSHSMPKFGINV---RFVDAA-----KPEEIRAAMRPE-----TKVVYIETPANPTLSLVDIETVAGIAHQQ 178 (398)
T ss_dssp SCHHHHHHHHTHHHHTTCEE---EEECTT-----SHHHHHHHCCTT-----EEEEEEESSBTTTTBCCCHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHHcCCEE---EEeCCC-----CHHHHHHhcCCC-----CeEEEEECCCCCCCcccCHHHHHHHHHHc
Confidence 455666665 7778766 888875 899999988642 224456788999999999999886
Q ss_pred CCCceecccccccc-------c-eeeeecCCCcccc------cccc-c---cc--cCCcccCC-CCcccHHHHHHHHHHc
Q psy13453 91 NGPLKVGGVLRRVY-------S-SCLVPRGQKSLRT------TVLF-H---FL--FQHWQIPL-GRRFRALKLWMTLRSY 149 (764)
Q Consensus 91 ~~wlHVDa~l~~~y-------~-s~ll~rd~~~l~~------~~s~-~---~d--~~d~tle~-SRr~~ALklWatL~~l 149 (764)
++++|+|......+ . .+++..-.+.+.. .+-. . .+ ...+.... +-....+..|+.+..+
T Consensus 179 ~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 258 (398)
T 2rfv_A 179 GALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGV 258 (398)
T ss_dssp TCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHH
T ss_pred CCEEEEECCCcccccCCchhhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhhh
Confidence 89999999642111 0 0111111111110 0000 0 00 00000001 1123455667766655
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe--------------CC---CCceeEEEEeeccccccccccccCccCCc
Q psy13453 150 GLKGLQAYLRKHISLAKKFADLVEQDDRFELV--------------CP---PSMGLVCFRLKVRFWDKLDNLFGTISFGD 212 (764)
Q Consensus 150 G~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell--------------~~---P~l~iV~Fry~P~~~~~~~~~~~~~~~~~ 212 (764)
+.+.+++++..+.++++.+.+++++.++-+ .+ ...++++|++.. .
T Consensus 259 --~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~----------------~ 320 (398)
T 2rfv_A 259 --KTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAG----------------G 320 (398)
T ss_dssp --TTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT----------------H
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC----------------C
Confidence 335666777788888888888886544332 11 246678886531 1
Q ss_pred cHHHHHHHHHHHhcCcEEEEec-----------e----------eCC--eeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 213 NDLNKAVYDRIIARKVIYIVKG-----------S----------FQD--RLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 213 d~~n~~L~~~L~~~G~~~vs~t-----------~----------l~g--~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
.....++.+++...|....... . ..| ..++|+++.. .+++++++.+.+.++++
T Consensus 321 ~~~~~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~-~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 321 LEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGL-EDPEDIINDLEHAIRKA 396 (398)
T ss_dssp HHHHHHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCS-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecC-CCHHHHHHHHHHHHHhh
Confidence 1112334444433332110000 0 012 4689998876 66788888888888764
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0017 Score=73.57 Aligned_cols=230 Identities=10% Similarity=-0.056 Sum_probs=137.2
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCC--CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccc---cCchhhhc----
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPD--SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDI---QSLNAPVS---- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~--~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~i---Dpi~~ia~---- 90 (764)
.|.++..++..+|... +.+|+++ ++.+|+++|+++|++.....++-++|-+.++-++|.+ +.++++++
T Consensus 190 ~y~~~~~~~~~~g~~~---v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~ 266 (498)
T 3ihj_A 190 QYPLYSAVISELDAIQ---VNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWE 266 (498)
T ss_dssp CCTHHHHHHHHTTCEE---EEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHcCCEE---EEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHH
Confidence 3557788899999877 9999985 4699999999999985432122344556888899999 55666654
Q ss_pred -CCCceeccccccc-c------cee-----------------e-eecCCCccccccccccccCCcccCCCC---------
Q psy13453 91 -NGPLKVGGVLRRV-Y------SSC-----------------L-VPRGQKSLRTTVLFHFLFQHWQIPLGR--------- 135 (764)
Q Consensus 91 -~~wlHVDa~l~~~-y------~s~-----------------l-l~rd~~~l~~~~s~~~d~~d~tle~SR--------- 135 (764)
++++++|...... | .++ + +..-.+.+. ++.|-|
T Consensus 267 ~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~------------G~~G~R~G~~~~~~~ 334 (498)
T 3ihj_A 267 EKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYM------------GECGYRGGYMEVINL 334 (498)
T ss_dssp HTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTT------------CCSSSCCEEEEEESC
T ss_pred cCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccc------------cCcccceEEEEEecC
Confidence 8999999864211 1 110 0 101111110 001111
Q ss_pred ----------------cccHHHHHHHHHHcc------------HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCce
Q psy13453 136 ----------------RFRALKLWMTLRSYG------------LKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMG 187 (764)
Q Consensus 136 ----------------r~~ALklWatL~~lG------------~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~ 187 (764)
....+..++....+. .+-..++.++..+.++++.+.|+++|++++ .+|+-+
T Consensus 335 ~~~l~~~l~~~~~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~-~~p~gg 413 (498)
T 3ihj_A 335 HPEIKGQLVKLLSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHC-NPLQGA 413 (498)
T ss_dssp CHHHHHHHHHHHHHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEC-CCCCBS
T ss_pred CHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEe-cCCCeE
Confidence 112233333333332 112244556677889999999999999886 567777
Q ss_pred eEEE-Eee-ccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEecee---CCeeEEEEeccCCCCCHHHHHHHHHH
Q psy13453 188 LVCF-RLK-VRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSF---QDRLFMRFAICSSQTEESDVQLGWNE 262 (764)
Q Consensus 188 iV~F-ry~-P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l---~g~~~LRi~v~np~Tt~e~i~~~l~~ 262 (764)
...| ++. |........ ..+.+.-...+.+.|.+.|.+++..... .+...+|+++. .++++++.+++.
T Consensus 414 ~~~~~~l~~p~~~~~~~~-----~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~---~~~e~l~~~i~~ 485 (498)
T 3ihj_A 414 MYAFPRIFIPAKAVEAAQ-----AHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTIL---PPVEKLKTVLQK 485 (498)
T ss_dssp SEECCEECCCHHHHHHHH-----HTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECC---SCHHHHHHHHHH
T ss_pred EEEEEeccCchhhhHHHH-----hcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeC---CCHHHHHHHHHH
Confidence 7776 332 111000000 0011111112456667789876654433 45678999984 579999999999
Q ss_pred HHHHHHHHHcc
Q psy13453 263 IRTATEEVLRG 273 (764)
Q Consensus 263 l~~~~~~i~~~ 273 (764)
|.++.++++++
T Consensus 486 L~~~~~~~~~~ 496 (498)
T 3ihj_A 486 VKDFHINFLEK 496 (498)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887654
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00048 Score=73.97 Aligned_cols=209 Identities=10% Similarity=0.083 Sum_probs=125.1
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCc
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPL 94 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wl 94 (764)
.|.++..+++..|... +.|| +|+++|+++|++. +-+++-+.++.++|.+-|++ +.+ ++++
T Consensus 122 ~~~~~~~~~~~~g~~~---~~v~------~d~~~l~~~l~~~-----~~~v~~~~p~nptG~~~~~~-l~~~~~~~~~~l 186 (370)
T 2z61_A 122 CYPCYKNFIRFLGAKP---VFCD------FTVESLEEALSDK-----TKAIIINSPSNPLGEVIDRE-IYEFAYENIPYI 186 (370)
T ss_dssp CCTHHHHHHHHTTCEE---EEEC------SSHHHHHHHCCSS-----EEEEEEESSCTTTCCCCCHH-HHHHHHHHCSEE
T ss_pred CchhHHHHHHHcCCEE---EEeC------CCHHHHHHhcccC-----ceEEEEcCCCCCcCcccCHH-HHHHHHHcCCEE
Confidence 4678888899988765 7777 8999999988642 22444567888999998877 654 8899
Q ss_pred eeccccccc-cc----ee-----------eeecCCCccc-cccccccccCCc---------ccCCCCcccHHHHHHHHHH
Q psy13453 95 KVGGVLRRV-YS----SC-----------LVPRGQKSLR-TTVLFHFLFQHW---------QIPLGRRFRALKLWMTLRS 148 (764)
Q Consensus 95 HVDa~l~~~-y~----s~-----------ll~rd~~~l~-~~~s~~~d~~d~---------tle~SRr~~ALklWatL~~ 148 (764)
++|...... +. ++ ++..-.+.+- ..+...+-+... ....+-....+..+++...
T Consensus 187 i~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 266 (370)
T 2z61_A 187 ISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISNDEIIEAILKLQQNLFISAPTISQYAALKA 266 (370)
T ss_dssp EEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHHHTSSSCHHHHHHHGGG
T ss_pred EEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccceEEEEEECHHHHHHHHHHHhhcccCCCHHHHHHHHHH
Confidence 999965321 11 10 0100011110 000000000000 0000012334445555555
Q ss_pred c---cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEE-EeeccccccccccccCccCCccHHHHHHHHHHH
Q psy13453 149 Y---GLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCF-RLKVRFWDKLDNLFGTISFGDNDLNKAVYDRII 224 (764)
Q Consensus 149 l---G~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~F-ry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~ 224 (764)
+ |.+.+.++.++..+..+++.+.|++. ++++.. |+-+.+.| ++. + + ..++.++|.
T Consensus 267 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~----------------~-~--~~~~~~~l~ 325 (370)
T 2z61_A 267 FEKETEREINSMIKEFDRRRRLVLKYVKDF-GWEVNN-PIGAYYVFPNIG----------------E-D--GREFAYKLL 325 (370)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCCC-CCBTTEECCBCS----------------S-C--HHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHHc-CCeecC-CCcceEEEEecC----------------C-C--HHHHHHHHH
Confidence 5 56677888888899999999999987 777643 44444333 221 1 1 246778886
Q ss_pred -hcCcEEEEeceeC--CeeEEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13453 225 -ARKVIYIVKGSFQ--DRLFMRFAICSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 225 -~~G~~~vs~t~l~--g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~ 267 (764)
+.|.......... +..++|+++. +++++++.+++.|.++.
T Consensus 326 ~~~gi~v~~g~~f~~~~~~~~Ri~~~---~~~~~i~~~~~~l~~~l 368 (370)
T 2z61_A 326 KEKFVALTPGIGFGSKGKNYIRISYA---NSYENIKEGLERIKEFL 368 (370)
T ss_dssp HHHCEECEEGGGGCGGGSSBEEEECC---SCHHHHHHHHHHHHHHH
T ss_pred HhCCEEEeCchhhCCCCCCEEEEEEe---CCHHHHHHHHHHHHHHH
Confidence 6787654433222 3568999887 57889999999887764
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00026 Score=75.97 Aligned_cols=212 Identities=13% Similarity=0.024 Sum_probs=128.1
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCc
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPL 94 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wl 94 (764)
.|.++..++..+|... +.+|+++++.+ ++++++++ .. +++-+.+..++|.+=|++++.+ ++++
T Consensus 115 ~~~~~~~~~~~~g~~~---~~v~~~~~~~~--~~l~~~~~------~~-~v~i~~p~nptG~~~~~~~l~~l~~~~~~~l 182 (360)
T 3hdo_A 115 SYSYYGTLAEVQGARV---RTFGLTGDFRI--AGFPERYE------GK-VFFLTTPNAPLGPSFPLEYIDELARRCAGML 182 (360)
T ss_dssp SCTHHHHHHHHHTCEE---EEECBCTTSSB--TTCCSSBC------SS-EEEEESSCTTTCCCCCHHHHHHHHHHBSSEE
T ss_pred ChHHHHHHHHHCCCEE---EEeeCCCCCCH--HHHHhhcC------CC-EEEEeCCCCCCCCCcCHHHHHHHHHHCCCEE
Confidence 4567888999999877 99999887777 44433221 12 5555678899999999888775 8899
Q ss_pred eeccccccccc-----------e-eeeecCCCccc-cccccccccCCc-------ccCCCCcccHHHHHHHHHHcc-HHH
Q psy13453 95 KVGGVLRRVYS-----------S-CLVPRGQKSLR-TTVLFHFLFQHW-------QIPLGRRFRALKLWMTLRSYG-LKG 153 (764)
Q Consensus 95 HVDa~l~~~y~-----------s-~ll~rd~~~l~-~~~s~~~d~~d~-------tle~SRr~~ALklWatL~~lG-~eG 153 (764)
++|.+...... . +++..-.+.+- ..+...+-..+. ....+-....+..+++...+- .+.
T Consensus 183 i~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~ 262 (360)
T 3hdo_A 183 VLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAGMRIGLAIARPEVIAALDKIRDHYNLDRLAQAACVAALRDQAY 262 (360)
T ss_dssp EEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTTSCCEEEECCHHHHHHHHHHSCSCCSCHHHHHHHHHHHHCHHH
T ss_pred EEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCccceeeEeeCHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCHHH
Confidence 99986431100 0 11111111110 000000000000 000001233444444433332 455
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEe
Q psy13453 154 LQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVK 233 (764)
Q Consensus 154 y~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~ 233 (764)
+.++.++..+..+++.+.|++. ++++. ++..+.+.|+.. +.+ ..++.++|.++|......
T Consensus 263 ~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~----------------~~~--~~~l~~~l~~~gi~v~~~ 322 (360)
T 3hdo_A 263 LSECCRRIRETREWFTTELRSI-GYDVI-PSQGNYLFATPP----------------DRD--GKRVYDGLYARKVLVRHF 322 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCEEC-CCSSSEEEEECT----------------TCC--HHHHHHHHHHTTEECBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCEEc-CCCccEEEEECC----------------CCC--HHHHHHHHHHCCEEEEEC
Confidence 7888889999999999999988 88864 555666666432 111 246778888889754332
Q ss_pred ceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13453 234 GSFQDRLFMRFAICSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 234 t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~ 267 (764)
....+..++|+++. ++++++.+++.++++.
T Consensus 323 ~~~~~~~~iRis~~----~~~e~~~l~~al~~~~ 352 (360)
T 3hdo_A 323 SDPLLAHGMRISIG----TREEMEQTLAALKEIG 352 (360)
T ss_dssp CSTTTTTSEEEECC----CHHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEcC----CHHHHHHHHHHHHHHh
Confidence 22233578999876 7899999999998876
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00076 Score=75.66 Aligned_cols=153 Identities=14% Similarity=0.150 Sum_probs=92.1
Q ss_pred HHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCC-cEEEEeeCCcccccccCchhhhc-----CCCceecccc
Q psy13453 27 ATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLC-PMCSGYCGRTLHQDIQSLNAPVS-----NGPLKVGGVL 100 (764)
Q Consensus 27 Aa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~-p~~VatAGTT~~G~iDpi~~ia~-----~~wlHVDa~l 100 (764)
.+..+|+.. +.||++ |+++|+++|+++ + -+++...++.++|.+-|++++++ +++++||+..
T Consensus 173 ~~~~~G~~v---~~v~~~-----d~~~l~~ai~~~-----tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~ 239 (445)
T 1qgn_A 173 ILPKMGITA---TVIDPA-----DVGALELALNQK-----KVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTF 239 (445)
T ss_dssp TGGGGTCEE---EEECSS-----CHHHHHHHHHHS-----CEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTT
T ss_pred HHHHcCCEE---EEeCCC-----CHHHHHHHhccC-----CCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCC
Confidence 456678765 788775 899999999864 2 24456778889999999999886 8899999965
Q ss_pred ccccc--------eeeeecCCCcccccc--cccc-----c----cCCcccCCCCcccHHHHHHHHHHccHHHHHHHHHHH
Q psy13453 101 RRVYS--------SCLVPRGQKSLRTTV--LFHF-----L----FQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKH 161 (764)
Q Consensus 101 ~~~y~--------s~ll~rd~~~l~~~~--s~~~-----d----~~d~tle~SRr~~ALklWatL~~lG~eGy~~~i~~~ 161 (764)
...+. -+++..-.+.+-..- ...+ + +..+....+-....+..|+.++ |.+.+..++++.
T Consensus 240 ~~~~~~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~~~g~~~~~~~a~~~~~--~l~~l~~r~~~~ 317 (445)
T 1qgn_A 240 ATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIR--GMKTLHLRVQQQ 317 (445)
T ss_dssp TCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHH--HGGGHHHHHHHH
T ss_pred cccccCCccccCCEEEEECCcccccccccceEEEEEECHHHHHHHHHHHHHhCCCCCHHHHHHHHH--hHHHHHHHHHHH
Confidence 32210 112111111111000 0000 0 0000000001123445566554 335567788899
Q ss_pred HHHHHHHHHHHhcCCCeE-EeCC-----C-----------CceeEEEEee
Q psy13453 162 ISLAKKFADLVEQDDRFE-LVCP-----P-----------SMGLVCFRLK 194 (764)
Q Consensus 162 i~lA~~l~~~I~~~p~~e-ll~~-----P-----------~l~iV~Fry~ 194 (764)
.+.++++++.|+++|+++ +..+ | .-++++|.+.
T Consensus 318 ~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~ 367 (445)
T 1qgn_A 318 NSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVD 367 (445)
T ss_dssp HHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEES
T ss_pred HHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEEC
Confidence 999999999999999984 4433 1 3568888764
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00017 Score=76.69 Aligned_cols=215 Identities=10% Similarity=0.014 Sum_probs=114.3
Q ss_pred HHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCccc-ccccC---chhhhc-----CCCcee
Q psy13453 27 ATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLH-QDIQS---LNAPVS-----NGPLKV 96 (764)
Q Consensus 27 Aa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~-G~iDp---i~~ia~-----~~wlHV 96 (764)
++...|... +.| .++++.+|+++|+++|++....+..+-+ +-+-++-++ |.+=| ++++++ ++++++
T Consensus 96 ~~~~~g~~~---~~v-~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~ 171 (347)
T 1jg8_A 96 MAVLSGVMP---HPV-PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHI 171 (347)
T ss_dssp HHHHTCCEE---EEE-CEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred hhhccCeEE---EEe-cCCCCccCHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEe
Confidence 567778765 777 5567889999999998641100112333 345566677 98744 444443 899999
Q ss_pred ccccc--------cc------cceeeeecCCCccccc---ccc-cccc----CC--cccCCCCcccHHHHHHHHHHccHH
Q psy13453 97 GGVLR--------RV------YSSCLVPRGQKSLRTT---VLF-HFLF----QH--WQIPLGRRFRALKLWMTLRSYGLK 152 (764)
Q Consensus 97 Da~l~--------~~------y~s~ll~rd~~~l~~~---~s~-~~d~----~d--~tle~SRr~~ALklWatL~~lG~e 152 (764)
|+... .. ++..+.+.-.+.+... +-. ..++ .. ....++-+..++..++....+ +
T Consensus 172 D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~ 249 (347)
T 1jg8_A 172 DGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIAL--T 249 (347)
T ss_dssp EETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHH--H
T ss_pred ehhhhhcchhhcCCChHHhcccccEEEEecccccCCCceEEEEcCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH--H
Confidence 98421 00 0011111111111100 000 0000 00 000011111222222222111 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEe-CCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEE
Q psy13453 153 GLQAYLRKHISLAKKFADLVEQDDRFELV-CPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYI 231 (764)
Q Consensus 153 Gy~~~i~~~i~lA~~l~~~I~~~p~~ell-~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~v 231 (764)
.+.+.+++..+.++++.+.|++. ++++. .++..+.+.|++... +.+ ..++.++|.+.|..+.
T Consensus 250 ~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~--------------~~~--~~~~~~~l~~~gi~v~ 312 (347)
T 1jg8_A 250 KMVDRLKEDHENARFLALKLKEI-GYSVNPEDVKTNMVILRTDNL--------------KVN--AHGFIEALRNSGVLAN 312 (347)
T ss_dssp HSSTTHHHHHHHHHHHHHHHHHH-TCBCCGGGCCSSEEEEECTTS--------------SSC--HHHHHHHHHHHTEECE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-CceeccCCCcceEEEEEcccc--------------cCC--HHHHHHHHHHCCCEEe
Confidence 22234556667888999999887 77753 345667777765210 111 2467788888887544
Q ss_pred EeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 232 VKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 232 s~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
.. +...+|+++ ...+++++++.+++.|+++.++
T Consensus 313 ~~----~~~~iRl~~-~~~~~~e~i~~~~~~l~~~l~~ 345 (347)
T 1jg8_A 313 AV----SDTEIRLVT-HKDVSRNDIEEALNIFEKLFRK 345 (347)
T ss_dssp EE----ETTEEEEEC-CTTSCHHHHHHHHHHHHHHHHH
T ss_pred cC----CCCeEEEEe-CCCCCHHHHHHHHHHHHHHHHh
Confidence 32 135799954 4567899999999999887654
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0039 Score=68.55 Aligned_cols=228 Identities=9% Similarity=0.074 Sum_probs=126.1
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHh-------hCCCCcEEEE-eeCCcccccccCch---hh
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFR-------KSFLCPMCSG-YCGRTLHQDIQSLN---AP 88 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~-------~~G~~p~~Va-tAGTT~~G~iDpi~---~i 88 (764)
.+.++..+++..|... +.||+++++ +|+++|+++|++.. ...++-+++. ..+..++|.+=|.+ ++
T Consensus 141 ~y~~~~~~~~~~g~~~---~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l 216 (425)
T 2r2n_A 141 AYSGTLQSLHPLGCNI---INVASDESG-IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEI 216 (425)
T ss_dssp CCHHHHHHHGGGTCEE---EEECEETTE-ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHH
T ss_pred CcHHHHHHHHHcCCEE---EEeCcCCCC-CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHH
Confidence 3457788888999876 889998764 99999999997321 0012234434 56788999987666 55
Q ss_pred hc-----CCCceeccccccc-cc-----ee----------eeecCCCcccccccccc-----c----cCCcccCCCCccc
Q psy13453 89 VS-----NGPLKVGGVLRRV-YS-----SC----------LVPRGQKSLRTTVLFHF-----L----FQHWQIPLGRRFR 138 (764)
Q Consensus 89 a~-----~~wlHVDa~l~~~-y~-----s~----------ll~rd~~~l~~~~s~~~-----d----~~d~tle~SRr~~ 138 (764)
++ ++++++|...... |. ++ ++..-.+.+-..+...+ + +....-..+-...
T Consensus 217 ~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~~l~~~l~~~~~~~~~~~~ 296 (425)
T 2r2n_A 217 YELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPKPLIERVILHIQVSTLHPS 296 (425)
T ss_dssp HHHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEHHHHHHHHHHHHTTTCSSC
T ss_pred HHHHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhccCccceEEEecCHHHHHHHHHHHHHhcCCCC
Confidence 43 8899999864211 11 10 11111111110000000 0 0000000011223
Q ss_pred HHHHHHH---HHHccHHHHHHH----HHHHHHHHHHHHHHHhc-CCCeEEeCCCCceeEE-EEeeccccccccccccCcc
Q psy13453 139 ALKLWMT---LRSYGLKGLQAY----LRKHISLAKKFADLVEQ-DDRFELVCPPSMGLVC-FRLKVRFWDKLDNLFGTIS 209 (764)
Q Consensus 139 ALklWat---L~~lG~eGy~~~----i~~~i~lA~~l~~~I~~-~p~~ell~~P~l~iV~-Fry~P~~~~~~~~~~~~~~ 209 (764)
.+..+++ |..++.++|.+. .++..+..+++.+.|++ .|++..+..|.-+... +++ |...
T Consensus 297 ~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~-~~~~----------- 364 (425)
T 2r2n_A 297 TFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKV-KGIN----------- 364 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEE-TTCS-----------
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEe-CCCC-----------
Confidence 3433333 333343444443 34455677788888887 6787544555555433 443 2110
Q ss_pred CCccHHHHHHHHHHHhcCcEEEEeceeC-----CeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 210 FGDNDLNKAVYDRIIARKVIYIVKGSFQ-----DRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 210 ~~~d~~n~~L~~~L~~~G~~~vs~t~l~-----g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
+. ...+.+.|.+.|..+....... +..++|++++. .++++++.+++.|+++.++
T Consensus 365 -~~---~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~--~~~~~i~~~~~~l~~~l~~ 423 (425)
T 2r2n_A 365 -DV---KELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSS--ASPEQMDVAFQVLAQLIKE 423 (425)
T ss_dssp -CC---HHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSS--CCHHHHHHHHHHHHHHHHH
T ss_pred -CH---HHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCC--CCHHHHHHHHHHHHHHHHH
Confidence 11 1235777888887665443331 24689998774 4899999999999887654
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0019 Score=70.77 Aligned_cols=226 Identities=8% Similarity=-0.033 Sum_probs=123.0
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEe-eCCcccccccCch---hh---h-c-
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGY-CGRTLHQDIQSLN---AP---V-S- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~Vat-AGTT~~G~iDpi~---~i---a-~- 90 (764)
.+.+...++...|... +.||+++++ +|+++|+++|++. .++-+++.+ .+..++|.+=|.+ ++ + .
T Consensus 133 ~y~~~~~~~~~~g~~~---~~v~~~~~g-~d~~~l~~~l~~~---~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~ 205 (423)
T 3ez1_A 133 GYDRHFLLLQTLGFEL---LTVDMQSDG-PDVDAVERLAGTD---PSVKGILFVPTYSNPGGETISLEKARRLAGLQAAA 205 (423)
T ss_dssp CCHHHHHHHHHHTCEE---EEEEEETTE-ECHHHHHHHHHSC---TTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSS
T ss_pred CcHHHHHHHHHcCCEE---EeccCCCCC-CCHHHHHHHHhhC---CCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhc
Confidence 4567778899999877 999998765 9999999999621 111233333 6789999997666 43 3 2
Q ss_pred -CCCceecccccc--ccc-------eee--------------eecCCCccccccccccc---------cCCcccCCCCcc
Q psy13453 91 -NGPLKVGGVLRR--VYS-------SCL--------------VPRGQKSLRTTVLFHFL---------FQHWQIPLGRRF 137 (764)
Q Consensus 91 -~~wlHVDa~l~~--~y~-------s~l--------------l~rd~~~l~~~~s~~~d---------~~d~tle~SRr~ 137 (764)
++++++|.+... .+. +++ +..-.+.+-.-+...+- +....-..+-..
T Consensus 206 ~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~ 285 (423)
T 3ez1_A 206 PDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAGAGLGFVASSEDNIRWLSKYLGAQSIGP 285 (423)
T ss_dssp TTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSSSSCEEEEECHHHHHHHHHHHHHSCSCC
T ss_pred cCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhccCCcceEEEEeCHHHHHHHHHHHhhhccCC
Confidence 778899985431 011 100 00000100000000000 000000111233
Q ss_pred cHHHHHHHHHHccH--HHHHHHHHHHHH----H----HHHHHHHHhcCC-CeEEeCCCCceeEEEEeecccccccccccc
Q psy13453 138 RALKLWMTLRSYGL--KGLQAYLRKHIS----L----AKKFADLVEQDD-RFELVCPPSMGLVCFRLKVRFWDKLDNLFG 206 (764)
Q Consensus 138 ~ALklWatL~~lG~--eGy~~~i~~~i~----l----A~~l~~~I~~~p-~~ell~~P~l~iV~Fry~P~~~~~~~~~~~ 206 (764)
..+..+++...+.. +.+.+.+++..+ . .+++.+.+.+.+ .+++..+..-..+.+++..
T Consensus 286 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~----------- 354 (423)
T 3ez1_A 286 NKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAE----------- 354 (423)
T ss_dssp CHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESS-----------
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCC-----------
Confidence 44555555555444 334444333322 2 334444455454 4666544334445555421
Q ss_pred CccCCccHHHHHHHHHHHhcCcEEEE-ecee-----CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHc
Q psy13453 207 TISFGDNDLNKAVYDRIIARKVIYIV-KGSF-----QDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLR 272 (764)
Q Consensus 207 ~~~~~~d~~n~~L~~~L~~~G~~~vs-~t~l-----~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~ 272 (764)
. + ...+.+.|.+.|..+.. .... .+..++|+++... ++++++.+++.|.++.+++..
T Consensus 355 ----~-~--~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~--~~~~i~~~~~~l~~~l~~~~~ 417 (423)
T 3ez1_A 355 ----P-V--ADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRP--PVEEVRTAMQVVAACIRLATE 417 (423)
T ss_dssp ----S-C--HHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSS--CHHHHHHHHHHHHHHHHHHHH
T ss_pred ----C-c--HHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCC--CHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 24677888888875543 2111 2457899988544 899999999999998877644
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00039 Score=76.26 Aligned_cols=142 Identities=13% Similarity=0.082 Sum_probs=88.5
Q ss_pred hhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCceeccccccc
Q psy13453 29 HSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKVGGVLRRV 103 (764)
Q Consensus 29 ~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHVDa~l~~~ 103 (764)
..+|+.. +.||++ |+++|+++|+++ +-+++...++.++|.+.|++++++ ++++|+|......
T Consensus 127 ~~~g~~~---~~v~~~-----d~~~l~~~i~~~-----~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~ 193 (392)
T 3qhx_A 127 TGWNVEY---TPVALA-----DLDAVRAAIRPT-----TRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASP 193 (392)
T ss_dssp GGGTCEE---EEECTT-----CHHHHHHHCCTT-----EEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCT
T ss_pred HhcCcEE---EEeCCC-----CHHHHHHhhCCC-----CeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCccc
Confidence 6677765 778776 899999999753 224456778889999999999886 8999999964211
Q ss_pred cc--------eeeeecCCCcccc------cccccc--c----cCCcccCCCCcccHHHHHHHHHHccHHHHHHHHHHHHH
Q psy13453 104 YS--------SCLVPRGQKSLRT------TVLFHF--L----FQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHIS 163 (764)
Q Consensus 104 y~--------s~ll~rd~~~l~~------~~s~~~--d----~~d~tle~SRr~~ALklWatL~~lG~eGy~~~i~~~i~ 163 (764)
+. -+++..-.|.+-. .+-... + +....-..+.+...+..|+.++.+ +.+..++++..+
T Consensus 194 ~~~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l--~~l~~~~~~~~~ 271 (392)
T 3qhx_A 194 ALQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRGL--KTLVLRMQRHSE 271 (392)
T ss_dssp TTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH--TTHHHHHHHHHH
T ss_pred ccCChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhh--hHHHHHHHHHHH
Confidence 10 0111111111110 000000 0 000111123445667778777644 447788999999
Q ss_pred HHHHHHHHHhcCCCeEEeCCCC
Q psy13453 164 LAKKFADLVEQDDRFELVCPPS 185 (764)
Q Consensus 164 lA~~l~~~I~~~p~~ell~~P~ 185 (764)
.++++++.++++|.+.-+..|.
T Consensus 272 ~~~~l~~~L~~~~~v~~v~~p~ 293 (392)
T 3qhx_A 272 NAAAVAEFLAEHPAISTVLYPG 293 (392)
T ss_dssp HHHHHHHHHHTCTTEEEEECTT
T ss_pred HHHHHHHHHhcCCCcceEECCC
Confidence 9999999999999987665443
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0042 Score=69.85 Aligned_cols=173 Identities=14% Similarity=0.014 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcch
Q psy13453 563 LEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNS 642 (764)
Q Consensus 563 lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~ 642 (764)
.+.++.+.|++++..+.- ...+|+++|||||-.|++.||....+ +-+|.....-|=
T Consensus 108 ~~~~lae~L~~~~p~~~~--------~~v~f~~sGsEA~e~AlklAr~~t~r----------------~~ii~~~~~yHG 163 (456)
T 4atq_A 108 GYVAVTEQLNRLTPGDHA--------KRTVLFNSGAEAVENAVKVARLATGR----------------DAVVAFDHAYHG 163 (456)
T ss_dssp HHHHHHHHHHHHSSCSSC--------EEEEEESSHHHHHHHHHHHHHHHHCC----------------CEEEEETTCCCC
T ss_pred HHHHHHHHHHHhCCCCCC--------cEEEEeCChHHHHHHHHHHHhhhhcC----------------CeEEEEecccCC
Confidence 444566778888743211 23578999999999999999976321 123444455554
Q ss_pred hHHHHHHhCC-------------CceEEEecCC------CCcccHHHHHHHHHHhhh--cCCCceEEEEeeccCCccccc
Q psy13453 643 SVEKSAIIGD-------------VPVRQLRSDD------NGVLRGDALLTAVKEDLA--KGLIPCCLIATLGTTGTCAFD 701 (764)
Q Consensus 643 Sv~kAa~~lG-------------l~v~~Vp~d~------~g~md~~~Le~~I~~~~~--~G~~p~~VvataGTT~~GaiD 701 (764)
...-+..+.+ -.+..+|... ...-+.+.+++.++...+ .+..+.+|++=--....|.+-
T Consensus 164 ~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~ 243 (456)
T 4atq_A 164 RTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIV 243 (456)
T ss_dssp SSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBC
T ss_pred ccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccc
Confidence 4333333321 1466777531 122345566655543221 233445555433333345553
Q ss_pred ----cHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCcee
Q psy13453 702 ----NLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSA 762 (764)
Q Consensus 702 ----pl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~ 762 (764)
=+++|+++|++||+.|++|-.+.|+.....-+.+..-|+ ..|-+|+. |.++.-+..|+
T Consensus 244 p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv-~PDivt~g--K~lggg~P~~a 305 (456)
T 4atq_A 244 PAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGV-VPDIITMA--KGIAGGLPLSA 305 (456)
T ss_dssp CCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTC-CCSEEEEC--GGGGTTSSCEE
T ss_pred cchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCC-CCchhhhh--hcccCcCCcee
Confidence 499999999999999999999988544333333333466 57988886 54444344444
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0023 Score=68.55 Aligned_cols=219 Identities=11% Similarity=0.005 Sum_probs=126.6
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCccc-HHHHHHHHHHHhhCCCCcEEEEeeCCcccccccC---chhhhc-----
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLA-YLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQS---LNAPVS----- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD-~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDp---i~~ia~----- 90 (764)
.|.++..+++.+|... +.||++....++ ++++.+++. .++-+++-+-++.++|.+=| ++++++
T Consensus 107 ~y~~~~~~~~~~g~~~---~~v~~~~~~~~~~l~~~~~~~~-----~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~ 178 (364)
T 1lc5_A 107 GFAEYGRALAQSGCEI---RRWSLREADGWQLTDAILEALT-----PDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSL 178 (364)
T ss_dssp CCTHHHHHHHHTTCEE---EEEECCGGGTTCCCTTHHHHCC-----TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHcCCeE---EEEeCCcccccchhHHHHHhcc-----CCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhc
Confidence 4567888899999876 889998522344 344444332 12234445667889999877 666654
Q ss_pred CCCceeccccccc-cc--e-----------eeeecCCCccc-ccccccccc-CCcc-------cCCCCcccHHHHHHHHH
Q psy13453 91 NGPLKVGGVLRRV-YS--S-----------CLVPRGQKSLR-TTVLFHFLF-QHWQ-------IPLGRRFRALKLWMTLR 147 (764)
Q Consensus 91 ~~wlHVDa~l~~~-y~--s-----------~ll~rd~~~l~-~~~s~~~d~-~d~t-------le~SRr~~ALklWatL~ 147 (764)
++++++|...... +. + +++..-.+.+- .-+...+-+ .+.. ...+-....+..+++..
T Consensus 179 ~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 258 (364)
T 1lc5_A 179 NINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQMPWSVNALAALAGEV 258 (364)
T ss_dssp TCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHSCTTCSCHHHHHHHHH
T ss_pred CcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCccceEEEEECCHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 8899999964211 10 0 11111111110 000000000 1000 00011344566666666
Q ss_pred HccH-HHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhc
Q psy13453 148 SYGL-KGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIAR 226 (764)
Q Consensus 148 ~lG~-eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~ 226 (764)
.+-. +.+.++.++..+..+++.+.+++.|++++. ++.-+.+.|++. . + ..++.++|.++
T Consensus 259 ~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~g~~~~~~~~-~--------------~----~~~l~~~l~~~ 318 (364)
T 1lc5_A 259 ALQDSAWQQATWHWLREEGARFYQALCQLPLLTVY-PGRANYLLLRCE-R--------------E----DIDLQRRLLTQ 318 (364)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEC-CCSSSEEEEEES-C--------------T----TCCHHHHHHTT
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHhcCCCCEEC-CCCCeEEEEECC-C--------------c----HHHHHHHHHHC
Confidence 6543 456777777888899999999998899875 556666666542 1 1 12467778888
Q ss_pred CcEEEEeceeC--CeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 227 KVIYIVKGSFQ--DRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 227 G~~~vs~t~l~--g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
|..+....... +..++|+++. ++++++.+++.++++.+++
T Consensus 319 gi~v~~g~~~~~~~~~~iRis~~----~~~~~~~l~~~l~~~~~~~ 360 (364)
T 1lc5_A 319 RILIRSCANYPGLDSRYYRVAIR----SAAQNERLLAALRNVLTGI 360 (364)
T ss_dssp TEECEECTTSTTCCTTEEEEECC----CHHHHHHHHHHHHHHC---
T ss_pred CcEEeeCcccCCCCCCEEEEEeC----CHHHHHHHHHHHHHHhhcc
Confidence 87655443332 3568999864 5788999999888875543
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0035 Score=69.72 Aligned_cols=207 Identities=13% Similarity=-0.006 Sum_probs=115.4
Q ss_pred EEecCC-CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCceeccccccc---------
Q psy13453 39 RLSGLP-DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKVGGVLRRV--------- 103 (764)
Q Consensus 39 ~~Vpvd-~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHVDa~l~~~--------- 103 (764)
+.+|++ +++.+|+++|++++++.+ .-+++.+.+.++++. +++++++ ++++++|......
T Consensus 161 ~~~~~~~~~~~~d~~~l~~~i~~~~----~~~i~~~~~~~~~~~--~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~ 234 (447)
T 3h7f_A 161 GFYGVDPATHLIDMDAVRATALEFR----PKVIIAGWSAYPRVL--DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPS 234 (447)
T ss_dssp EEECCCTTTCSCCHHHHHHHHHHHC----CSEEEEECSSCCSCC--CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC
T ss_pred EEcCcCcccCCcCHHHHHHHHHhcC----CeEEEEcCCCCCCcc--CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCC
Confidence 456776 578999999999997642 124444455555554 7777765 8999999963110
Q ss_pred ---cceeeeecCCCcccc---cccc-cccc-------CCcccCCCCc-ccHHHHHHHHHHccHHHHHHHHHHHHHHHHHH
Q psy13453 104 ---YSSCLVPRGQKSLRT---TVLF-HFLF-------QHWQIPLGRR-FRALKLWMTLRSYGLKGLQAYLRKHISLAKKF 168 (764)
Q Consensus 104 ---y~s~ll~rd~~~l~~---~~s~-~~d~-------~d~tle~SRr-~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l 168 (764)
...+++..-.+.+.+ .+-. ..++ ......++-. .....+.+++...-.+++.++.++..+.++++
T Consensus 235 ~~~~~di~~~s~sK~l~G~~gG~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l 314 (447)
T 3h7f_A 235 PVPHADVVSTTVHKTLGGGRSGLIVGKQQYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARII 314 (447)
T ss_dssp STTTCSEEEEESSGGGCCCSCEEEEECGGGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcEEEecCCcCCCCCCeEEEEECHHHHHHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 011222111122210 0000 0000 0111122221 12345556666666678899999999999999
Q ss_pred HHHHhcC----CCeEEeCCC-CceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEE----e--ceeC
Q psy13453 169 ADLVEQD----DRFELVCPP-SMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIV----K--GSFQ 237 (764)
Q Consensus 169 ~~~I~~~----p~~ell~~P-~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs----~--t~l~ 237 (764)
.+.|++. ++++++..+ ..+.+.+.+.+.+ .+ ...+.+.|.+.|..... . ...-
T Consensus 315 ~~~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--------------~~--~~~~~~~l~~~GI~v~~~~i~~~~~~p~ 378 (447)
T 3h7f_A 315 ADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDSP--------------LD--GQAAEDLLHEVGITVNRNAVPNDPRPPM 378 (447)
T ss_dssp HHHHTSHHHHHTTCEEGGGSCSSSEEEEECTTSS--------------CC--HHHHHHHHHHTTEECBC-----------
T ss_pred HHHHHhccccCCCeEEecCCCCCCEEEEEcCCCC--------------CC--HHHHHHHHHHCCeEEecccCCCCCCCCC
Confidence 9999986 589987633 4445555443211 11 13455566666764320 0 0111
Q ss_pred CeeEEEEeccC---CCCCHHHHHHHHHHHHHHH
Q psy13453 238 DRLFMRFAICS---SQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 238 g~~~LRi~v~n---p~Tt~e~i~~~l~~l~~~~ 267 (764)
....+|+.... ...++++++++++.|+++.
T Consensus 379 ~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l 411 (447)
T 3h7f_A 379 VTSGLRIGTPALATRGFGDTEFTEVADIIATAL 411 (447)
T ss_dssp --CEEEEECHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCceeccCHHHhhCCCCHHHHHHHHHHHHHHH
Confidence 24569985422 2367899999999988765
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00035 Score=75.99 Aligned_cols=227 Identities=9% Similarity=0.014 Sum_probs=127.1
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCC-----------CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccc---cCc
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLP-----------DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDI---QSL 85 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd-----------~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~i---Dpi 85 (764)
.|.++..++...|... +.+|++ .++.+|+++|++++++. +-+++-+.++.++|.+ +++
T Consensus 118 ~~~~~~~~~~~~g~~~---~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~~-----~~~v~~~~p~nptG~~~~~~~l 189 (410)
T 3e2y_A 118 FYDCYEPMVRMAGAVP---VFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSK-----TKAIILNTPHNPLGKVYTRQEL 189 (410)
T ss_dssp CCTTHHHHHHHTTCEE---EEEECEECCCCSSCCBGGGEECCHHHHHTTCCTT-----EEEEEEESSCTTTCCCCCHHHH
T ss_pred CchhhHHHHHHcCCEE---EEEeccccccccccccccCCcCCHHHHHhhcCCC-----ceEEEEeCCCCCCCcCcCHHHH
Confidence 3467788889999876 888886 46679999999988642 2244456788999999 778
Q ss_pred hhhhc-----CCCceeccccccc-cc-----ee----------eeec-CCCccc-cccccccccC---------CcccCC
Q psy13453 86 NAPVS-----NGPLKVGGVLRRV-YS-----SC----------LVPR-GQKSLR-TTVLFHFLFQ---------HWQIPL 133 (764)
Q Consensus 86 ~~ia~-----~~wlHVDa~l~~~-y~-----s~----------ll~r-d~~~l~-~~~s~~~d~~---------d~tle~ 133 (764)
+++++ ++++++|...... |. ++ +... -.+.+- .-+...+-.. ...-..
T Consensus 190 ~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~ 269 (410)
T 3e2y_A 190 QVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWKLGWSIGPAHLIKHLQTVQQNS 269 (410)
T ss_dssp HHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGGCCEEEECCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCCceEEEEEECHHHHHHHHHHHHhh
Confidence 88775 8999999964211 10 10 0000 000000 0000000000 000000
Q ss_pred CCcccHHHHHHHHHHc---------cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeecccccccccc
Q psy13453 134 GRRFRALKLWMTLRSY---------GLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNL 204 (764)
Q Consensus 134 SRr~~ALklWatL~~l---------G~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~ 204 (764)
+-....+..+++...+ ..+.+.++.++..+..+++.+.|++. ++++..+..-..+.+.+.... ...+
T Consensus 270 ~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~-~~~~-- 345 (410)
T 3e2y_A 270 FYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSV-GLKPIVPDGGYFIIADVSSLG-ADLS-- 345 (410)
T ss_dssp TCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBCSBSSEEEEECGGGC-CCCT--
T ss_pred ccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCccEEEEEEchhhh-cccc--
Confidence 1112233333333332 35567788888888999999999987 888765444334444432100 0000
Q ss_pred ccCccCCccH-HHHHHHHHHH-hcCcEEEEeceeC-------CeeEEEEeccCCCCCHHHHHHHHHHHHH
Q psy13453 205 FGTISFGDND-LNKAVYDRII-ARKVIYIVKGSFQ-------DRLFMRFAICSSQTEESDVQLGWNEIRT 265 (764)
Q Consensus 205 ~~~~~~~~d~-~n~~L~~~L~-~~G~~~vs~t~l~-------g~~~LRi~v~np~Tt~e~i~~~l~~l~~ 265 (764)
....+. -..++.+++. +.|.++....... +..++|++++. ++++++++++.|++
T Consensus 346 ----~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~---~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 346 ----DMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIK---KDSTLDAAEEIFRA 408 (410)
T ss_dssp ----TCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCC---CHHHHHHHHHHHHT
T ss_pred ----cccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcC---CHHHHHHHHHHHHh
Confidence 000011 1235555554 5687655444332 24789998765 89999999998864
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00092 Score=73.07 Aligned_cols=224 Identities=8% Similarity=-0.056 Sum_probs=129.5
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCC--CcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccC---chhhhc----
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDS--EWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQS---LNAPVS---- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~--~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDp---i~~ia~---- 90 (764)
.|.++..++..+|... +.+|++++ +.+|+++|+++|++ ++-+++-+.++.++|.+=| ++++++
T Consensus 132 ~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~d~~~l~~~i~~-----~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~ 203 (412)
T 2x5d_A 132 SYPIHIYGAVIAGAQV---RSVPLVPGIDFFNELERAIRESIP-----KPRMMILGFPSNPTAQCVELDFFERVVALAKQ 203 (412)
T ss_dssp CCHHHHHHHHHHTCEE---EEEECSTTSCHHHHHHHHHHTEES-----CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHcCCEE---EEeecCCccCCCCCHHHHHHhccc-----CceEEEECCCCCCCCCcCCHHHHHHHHHHHHH
Confidence 4567888889999876 88999864 46899999998863 2234544677888999855 455544
Q ss_pred -CCCceeccccccc-c-c----ee-----------eeecCCCccc-cccccccccCCc---------ccCCCCcccHHHH
Q psy13453 91 -NGPLKVGGVLRRV-Y-S----SC-----------LVPRGQKSLR-TTVLFHFLFQHW---------QIPLGRRFRALKL 142 (764)
Q Consensus 91 -~~wlHVDa~l~~~-y-~----s~-----------ll~rd~~~l~-~~~s~~~d~~d~---------tle~SRr~~ALkl 142 (764)
++++++|...... + + ++ ++..-.+.+- .-+...+-+.+. ....+-....+..
T Consensus 204 ~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 283 (412)
T 2x5d_A 204 YDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVGNPELVSALARIKSYHDYGTFTPLQ 283 (412)
T ss_dssp HTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEEEEECHHHHHHHHHHHHHHCCCCCHHHH
T ss_pred cCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcccceEEEEcCHHHHHHHHHHHhhhccCCCHHHH
Confidence 8899999964221 1 0 10 0110011110 000000000000 0000112233444
Q ss_pred HHHHHH--ccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCcee-EEEEeeccccccccccccCccCCccHHHHHH
Q psy13453 143 WMTLRS--YGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGL-VCFRLKVRFWDKLDNLFGTISFGDNDLNKAV 219 (764)
Q Consensus 143 WatL~~--lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~i-V~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L 219 (764)
+++... .+.+.+.++.++..+..+++.+.|++. +++++ .|+.+. +.+++. .+.. ..+ ..++
T Consensus 284 ~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~g~~~~~~~~-~~~~-----------~~~--~~~~ 347 (412)
T 2x5d_A 284 VAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREA-GWMVE-NPKASMYVWAKIP-EPYA-----------HLG--SLEF 347 (412)
T ss_dssp HHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHH-TCCCC-CCSBSSEEEEECC-TTTG-----------GGC--HHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEec-CCCeeeEEEEEcC-CccC-----------CCC--HHHH
Confidence 443333 355678888888889999999999987 77754 455453 445442 1100 001 2467
Q ss_pred HHHHHh-cCcEEEEeceeC--CeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 220 YDRIIA-RKVIYIVKGSFQ--DRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 220 ~~~L~~-~G~~~vs~t~l~--g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
.++|.+ .|..+....... +..++|+++.. ++++++.+++.+.++.+++
T Consensus 348 ~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~---~~~~l~~~l~~l~~~l~~~ 398 (412)
T 2x5d_A 348 AKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE---NRDRLRQAVRGIKAMFRAD 398 (412)
T ss_dssp HHHHHHHHCEECEEGGGGCGGGTTEEEEECCS---CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCEEEeCchhhCCCCCCeEEEEecC---CHHHHHHHHHHHHHHHHhc
Confidence 778765 587655443332 34689998875 6889999999998877653
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0015 Score=71.35 Aligned_cols=218 Identities=7% Similarity=0.038 Sum_probs=127.6
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCC-CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccC---chhhhc-----
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPD-SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQS---LNAPVS----- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~-~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDp---i~~ia~----- 90 (764)
.+.++..++...|... +.||+++ .+.+|+++|+++|+... -+++-+.++.++|.+=| ++++++
T Consensus 142 ~y~~~~~~~~~~g~~~---~~v~~~~~~~~~d~~~l~~~l~~~~-----~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~ 213 (404)
T 2o1b_A 142 GYTDYLAGVLLADGKP---VPLNLEPPHYLPDWSKVDSQIIDKT-----KLIYLTYPNNPTGSTATKEVFDEAIAKFKGT 213 (404)
T ss_dssp CCSSHHHHHHHTTCEE---EEEECCTTTCCCCGGGSCHHHHHHE-----EEEEECSSCTTTCCCCCHHHHHHHHHHHTTS
T ss_pred CchhHHHHHHHCCCEE---EEeccCcccCcCCHHHHHHhhccCc-----eEEEEcCCCCCCCccCCHHHHHHHHHHHHHc
Confidence 4677888999999876 8899986 55799999999997532 24434568889999855 445543
Q ss_pred CCCceeccccccc-cc----e-----------eeeecCCCccc-cccccccccCCc---------ccCCCCcccHHHHHH
Q psy13453 91 NGPLKVGGVLRRV-YS----S-----------CLVPRGQKSLR-TTVLFHFLFQHW---------QIPLGRRFRALKLWM 144 (764)
Q Consensus 91 ~~wlHVDa~l~~~-y~----s-----------~ll~rd~~~l~-~~~s~~~d~~d~---------tle~SRr~~ALklWa 144 (764)
++++++|...... +. + +++..-.+.+- ..+...+-+.+. ....+-....+..++
T Consensus 214 ~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a 293 (404)
T 2o1b_A 214 DTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVGNKDMIQALKKYQTHTNAGMFGALQDA 293 (404)
T ss_dssp SCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_pred CCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCchhheEeEecCHHHHHHHHHHHhhccCCCCHHHHHH
Confidence 7899999864211 10 0 11111111110 000000000000 000001223344444
Q ss_pred HHHHc--cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCcee-EEEEeeccccccccccccCccCCccHHHHHHHH
Q psy13453 145 TLRSY--GLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGL-VCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYD 221 (764)
Q Consensus 145 tL~~l--G~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~i-V~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~ 221 (764)
+...+ |.+.+.++.++..+..+++.+.|++. ++++.. |+.+. +.+++. . ..+ ..++.+
T Consensus 294 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~g~~~~~~~~-~--------------~~~--~~~l~~ 354 (404)
T 2o1b_A 294 AIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKA-DLPFVH-AKGGIYVWLETP-P--------------GYD--SEQFEQ 354 (404)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEC-CCBSSEEEEECC-T--------------TCC--HHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc-CCeecC-CCcceEEEEeCC-C--------------CCC--HHHHHH
Confidence 44443 45667778888888999999999987 787654 55554 445442 1 111 246777
Q ss_pred HHH-hcCcEEEEeceeC--CeeEEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13453 222 RII-ARKVIYIVKGSFQ--DRLFMRFAICSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 222 ~L~-~~G~~~vs~t~l~--g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~ 267 (764)
+|. +.|..+....... +..++|+++.. ++++++.+++.|+++.
T Consensus 355 ~l~~~~gi~v~~g~~f~~~~~~~iRis~~~---~~e~l~~~l~~l~~~l 400 (404)
T 2o1b_A 355 FLVQEKSILVAPGKPFGENGNRYVRISLAL---DDQKLDEAAIRLTELA 400 (404)
T ss_dssp HHHHHHCEECEESGGGCGGGTTEEEEECCS---CTTHHHHHHHHHHGGG
T ss_pred HHHHHCCEEEeCchhhCcCCCCeEEEEEcC---CHHHHHHHHHHHHHHH
Confidence 776 4687654433222 35689998875 5678998888887654
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0073 Score=68.24 Aligned_cols=170 Identities=12% Similarity=0.063 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
+..+.++.+.|+++...+- ....|+.+|||||-.|+++||.....+.+. ..+.+|-....-
T Consensus 110 ~~~~~~lAe~L~~~~p~~~---------~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~----------~r~~ii~~~~~y 170 (473)
T 4e3q_A 110 SDQTVMLSEKLVEVSPFDS---------GRVFYTNSGSEANDTMVKMLWFLHAAEGKP----------QKRKILTRWNAY 170 (473)
T ss_dssp EHHHHHHHHHHHHHSSCSS---------CEEEEESSHHHHHHHHHHHHHHHHHHTTCT----------TCCEEEEETTCC
T ss_pred CHHHHHHHHHHHhhCCCCc---------cEEEEeCchHHHHHHHHHHHHHHHHhcCCC----------CcceEEEeeceE
Confidence 3445567778888875432 246799999999999999999765433111 112234444555
Q ss_pred chhHHHHHHhCCC-----------ceEEEecC------CCCcc-------cHHHHHHHHHHhhhcCCCceEEEEeeccCC
Q psy13453 641 NSSVEKSAIIGDV-----------PVRQLRSD------DNGVL-------RGDALLTAVKEDLAKGLIPCCLIATLGTTG 696 (764)
Q Consensus 641 H~Sv~kAa~~lGl-----------~v~~Vp~d------~~g~m-------d~~~Le~~I~~~~~~G~~p~~VvataGTT~ 696 (764)
|=...-++.+.|- .+..++.. ..+.. ..++|++.|.+.. .....+|++=--...
T Consensus 171 HG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~--~~~iAavi~EPiqg~ 248 (473)
T 4e3q_A 171 HGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREG--ADTIAGFFAEPVMGA 248 (473)
T ss_dssp CCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBST
T ss_pred CCCccccccccccccccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhC--CCceEEEEeCCccCC
Confidence 6444444444331 34455532 22222 1345566665431 123444444333333
Q ss_pred ccccc----cHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccC
Q psy13453 697 TCAFD----NLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWL 754 (764)
Q Consensus 697 ~GaiD----pl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l 754 (764)
.|.+- =+++|+++|++||+.|++|=.+.|+-....-+....-|+ ..|-+++. |.+
T Consensus 249 gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv-~PDi~t~~--K~l 307 (473)
T 4e3q_A 249 GGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDF-TPDAIISS--KNL 307 (473)
T ss_dssp TTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTC-CCSEEEEC--GGG
T ss_pred CCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchhHHHhcCC-CCChHHhc--ccc
Confidence 45553 489999999999999999999888643333233333455 46877764 544
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00079 Score=74.66 Aligned_cols=150 Identities=12% Similarity=0.121 Sum_probs=91.8
Q ss_pred eeeHHHHHh----hcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----C
Q psy13453 21 IYESFKATH----SLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----N 91 (764)
Q Consensus 21 ~YSv~KAa~----~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~ 91 (764)
|.+...++. .+|+.. +.||++ |+++|+++|+++ +-+++...++.++|.+.|++++++ +
T Consensus 130 y~~~~~~~~~~~~~~g~~~---~~v~~~-----d~~~l~~ai~~~-----t~~v~le~p~NptG~~~~l~~i~~la~~~g 196 (414)
T 3ndn_A 130 FGSCFVVCSEILPRWGVQT---VFVDGD-----DLSQWERALSVP-----TQAVFFETPSNPMQSLVDIAAVTELAHAAG 196 (414)
T ss_dssp CHHHHHHHHTHHHHTTCEE---EEECTT-----CHHHHHHHTSSC-----CSEEEEESSCTTTCCCCCHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHcCcEE---EEeCCC-----CHHHHHHhcCCC-----CeEEEEECCCCCCCccccHHHHHHHHHHcC
Confidence 334444443 378766 888876 899999998653 235556889999999999999886 8
Q ss_pred CCceeccccccc-------cc-eeeeecCCCccccc------ccc-ccccCC-----cccCCCCcccHHHHHHHHHHccH
Q psy13453 92 GPLKVGGVLRRV-------YS-SCLVPRGQKSLRTT------VLF-HFLFQH-----WQIPLGRRFRALKLWMTLRSYGL 151 (764)
Q Consensus 92 ~wlHVDa~l~~~-------y~-s~ll~rd~~~l~~~------~s~-~~d~~d-----~tle~SRr~~ALklWatL~~lG~ 151 (764)
+++++|...... ++ -+++..-.|.+-.. +-. ..+... +.-..+-....+..|+.++ |.
T Consensus 197 ~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~--~l 274 (414)
T 3ndn_A 197 AKVVLDNVFATPLLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLK--GL 274 (414)
T ss_dssp CEEEEECTTTHHHHCCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCCCCHHHHHHHHH--HG
T ss_pred CEEEEECCCcccccCCchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HH
Confidence 899999954211 11 11221111111110 000 000000 0000122335566677665 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC
Q psy13453 152 KGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS 185 (764)
Q Consensus 152 eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~ 185 (764)
+.+..++++..+.++++++.|+++|.+.-+.-|.
T Consensus 275 ~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~ 308 (414)
T 3ndn_A 275 ETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPY 308 (414)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCC
Confidence 6678889999999999999999999987665554
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0023 Score=71.04 Aligned_cols=100 Identities=11% Similarity=0.094 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeec--cccccccccccCccCCccHH-HHHHHHHH-HhcCcEEE
Q psy13453 156 AYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKV--RFWDKLDNLFGTISFGDNDL-NKAVYDRI-IARKVIYI 231 (764)
Q Consensus 156 ~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P--~~~~~~~~~~~~~~~~~d~~-n~~L~~~L-~~~G~~~v 231 (764)
+.+++..+.++++.+.|++. +++++ ++....+.|.+.. ++. +.+++ ..++.++| .+.|..+.
T Consensus 325 ~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~L~~~~gv~~~ 390 (467)
T 2oqx_A 325 DWLAYRIAQVQYLVDGLEEI-GVVCQ-QAGGHAAFVDAGKLLPHI------------PADQFPAQALACELYKVAGIRAV 390 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-TCCEE-EECSSCEEEEHHHHSTTS------------CGGGCHHHHHHHHHHHHHCEECE
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCeee-cCCceEEEEechhhcccC------------CcccccHHHHHHHHHHhcCceec
Confidence 35666778899999999987 88877 5445556665421 010 11233 46778888 78887654
Q ss_pred Eecee-------------CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 232 VKGSF-------------QDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 232 s~t~l-------------~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
..... .+..++|+++....+++++++.+++.|+++.++
T Consensus 391 ~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~ 441 (467)
T 2oqx_A 391 EIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_dssp EESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHS
T ss_pred ccccccccccccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhh
Confidence 32210 013689997654437899999999999888654
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0033 Score=69.08 Aligned_cols=224 Identities=8% Similarity=-0.002 Sum_probs=122.2
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEe-eCCcccccccCch---hh---h-c-
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGY-CGRTLHQDIQSLN---AP---V-S- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~Vat-AGTT~~G~iDpi~---~i---a-~- 90 (764)
.+.+...+++..|... +.||+++++ +|+++|+++|++. ++-+++.+ .++.++|.+=|.+ ++ + .
T Consensus 142 ~y~~~~~~~~~~g~~~---~~v~~~~~g-~d~~~l~~~l~~~----~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~ 213 (427)
T 3ppl_A 142 GYDRHFSITERFGFEM---ISVPMNEDG-PDMDAVEELVKNP----QVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAA 213 (427)
T ss_dssp CCHHHHHHHHHTTCEE---EEEEEETTE-ECHHHHHHHTTST----TEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSS
T ss_pred CcHHHHHHHHHcCCEE---EEeCCCCCC-CCHHHHHHHHhcC----CCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhc
Confidence 4566788899999877 999999876 9999999998421 12234444 7789999996666 43 3 3
Q ss_pred -CCCceeccccccc-cc-------eee--------------eecCCCccccccccccccCC---------cccCCCCccc
Q psy13453 91 -NGPLKVGGVLRRV-YS-------SCL--------------VPRGQKSLRTTVLFHFLFQH---------WQIPLGRRFR 138 (764)
Q Consensus 91 -~~wlHVDa~l~~~-y~-------s~l--------------l~rd~~~l~~~~s~~~d~~d---------~tle~SRr~~ 138 (764)
++++++|...... |. ++. +..-.+.+-.-+...+-... ..-..+.+..
T Consensus 214 ~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~~~ 293 (427)
T 3ppl_A 214 PDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSAENRKWYTGHAGIRGIGPN 293 (427)
T ss_dssp TTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCHHHHHHHHHHHHHHCSCCC
T ss_pred CCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCHHHHHHHHHHhhcccCCCC
Confidence 6789999864221 11 000 00000100000000000000 0000112334
Q ss_pred HHHHHHHHHHccH-HHHHHHHH----HHHHHHHHHHHHHh----cCCCeEEeCCCCceeEEEEeeccccccccccccCcc
Q psy13453 139 ALKLWMTLRSYGL-KGLQAYLR----KHISLAKKFADLVE----QDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTIS 209 (764)
Q Consensus 139 ALklWatL~~lG~-eGy~~~i~----~~i~lA~~l~~~I~----~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~ 209 (764)
.+..++....+.. +.+.+.++ ..-+..+++.+.|+ ..+++.+..+..-..+.+++..
T Consensus 294 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~-------------- 359 (427)
T 3ppl_A 294 KVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVP-------------- 359 (427)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECST--------------
T ss_pred HHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCc--------------
Confidence 4555555555543 33333332 23333344444443 3345665544344445554421
Q ss_pred CCccHHHHHHHHHHHhcCcEEEE-ecee-----CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy13453 210 FGDNDLNKAVYDRIIARKVIYIV-KGSF-----QDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVL 271 (764)
Q Consensus 210 ~~~d~~n~~L~~~L~~~G~~~vs-~t~l-----~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~ 271 (764)
. + ..++.+.|.+.|.++.. .... .+..++|+++..+ ++++++.+++.|.++.+++.
T Consensus 360 -~-~--~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~--~~~~i~~~~~~l~~~l~~~~ 421 (427)
T 3ppl_A 360 -G-T--ASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLP--PVEELEVAMDGVATCVLLAA 421 (427)
T ss_dssp -T-C--HHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSS--CHHHHHHHHHHHHHHHHHHH
T ss_pred -c-h--HHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCC--CHHHHHHHHHHHHHHHHHHH
Confidence 1 1 24677888888875543 1111 2467899988554 88999999999998877654
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00097 Score=73.77 Aligned_cols=148 Identities=13% Similarity=0.094 Sum_probs=90.0
Q ss_pred eeeeHHHHH----hhcCCCCCCeEEe-cCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc----
Q psy13453 20 LIYESFKAT----HSLSGTPDQVRLS-GLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS---- 90 (764)
Q Consensus 20 ~~YSv~KAa----~~LGl~~~~v~~V-pvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~---- 90 (764)
.|.+...++ ...|+.. +.+ |++ |+++|+++|+++ +-+++.+.++.++|.+.|++++++
T Consensus 106 ~~~~~~~~~~~~~~~~g~~~---~~~~~~~-----d~~~l~~~i~~~-----~~~v~~~~~~n~~G~~~~l~~i~~~a~~ 172 (421)
T 2ctz_A 106 LYGGTFNQFKVTLKRLGIEV---RFTSREE-----RPEEFLALTDEK-----TRAWWVESIGNPALNIPDLEALAQAARE 172 (421)
T ss_dssp CCHHHHHHHHTHHHHTTCEE---EECCTTC-----CHHHHHHHCCTT-----EEEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHcCCEE---EEECCCC-----CHHHHHHhhccC-----CeEEEEECCCCCCCcccCHHHHHHHHHH
Confidence 455555554 6677765 777 665 899999999753 224457788889999999999886
Q ss_pred -CCCceecccc-cccc--------------------c------eeeeec-CCCcc----cccccc-ccccCCc-------
Q psy13453 91 -NGPLKVGGVL-RRVY--------------------S------SCLVPR-GQKSL----RTTVLF-HFLFQHW------- 129 (764)
Q Consensus 91 -~~wlHVDa~l-~~~y--------------------~------s~ll~r-d~~~l----~~~~s~-~~d~~d~------- 129 (764)
++++++|++. ...+ + ++++.+ +...+ ...+.. ...+...
T Consensus 173 ~g~~livD~~~~~~g~~~~~~~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~ 252 (421)
T 2ctz_A 173 KGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFG 252 (421)
T ss_dssp HTCEEEEECGGGGGGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHG
T ss_pred cCCEEEEECCcccccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcc
Confidence 8999999965 2111 0 122222 11100 000000 0000000
Q ss_pred -----------c-cCCCCcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeC
Q psy13453 130 -----------Q-IPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVC 182 (764)
Q Consensus 130 -----------t-le~SRr~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~ 182 (764)
. ...+-+...+..|+.++ |.+-+.+++++..++++++.+.|+++|+++.+.
T Consensus 253 ~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~--~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~ 315 (421)
T 2ctz_A 253 ELAFIVKARVDGLRDQGQALGPFEAWVVLL--GMETLSLRAERHVENTLHLAHWLLEQPQVAWVN 315 (421)
T ss_dssp GGHHHHHHHHTHHHHHCCCCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEE
T ss_pred hhHHHHHHHHHHHHhcCCCCCHHHHHHHHc--CcchHHHHHHHHHHhHHHHHHHHHhCCCeeEEE
Confidence 0 00122445556676655 344567788888999999999999999999875
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0066 Score=66.80 Aligned_cols=214 Identities=9% Similarity=0.023 Sum_probs=109.0
Q ss_pred eEEecCCC-C----CcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccC---chhhhc-----CCCceecccccccc
Q psy13453 38 VRLSGLPD-S----EWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQS---LNAPVS-----NGPLKVGGVLRRVY 104 (764)
Q Consensus 38 v~~Vpvd~-~----~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDp---i~~ia~-----~~wlHVDa~l~~~y 104 (764)
++.+|+|+ + +.+|+++|++++++... ++-+++-+.++.++|.+=| +.++++ ++++|+|......+
T Consensus 175 ~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~--~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~ 252 (444)
T 3if2_A 175 IDEVTHDGEEGFFKYRVDFEALENLPALKEG--RIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPF 252 (444)
T ss_dssp EEEEEETTEEEEEEEECCHHHHHTCHHHHTT--CEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTT
T ss_pred EEecccccccCccccCCCHHHHHHHHHhcCC--CceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCcc
Confidence 36677775 3 48999999999654211 2223345667889999877 555543 89999999753211
Q ss_pred ce--------------eeeecCCCccccccccccccCC---------cccCCCCcccHHHHHHHHHHccHHHHHH-----
Q psy13453 105 SS--------------CLVPRGQKSLRTTVLFHFLFQH---------WQIPLGRRFRALKLWMTLRSYGLKGLQA----- 156 (764)
Q Consensus 105 ~s--------------~ll~rd~~~l~~~~s~~~d~~d---------~tle~SRr~~ALklWatL~~lG~eGy~~----- 156 (764)
.+ +++..-.+.....+...+-..+ ..-..+.+...+..+++...+-...+.+
T Consensus 253 ~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 332 (444)
T 3if2_A 253 PNIIYSDAHLNWDNNTILCFSLSKIGLPGMRTGIIVADAKVIEAVSAMNAVVNLAPTRFGAAIATPLVANDRIKQLSDNE 332 (444)
T ss_dssp TCCBCSCCCCCCCTTEEEEEESTTTTCGGGCCEEEECCHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHTSHHHHHHHHT
T ss_pred cccccccccccCCCCEEEEechhhccCCCCceEEEEECHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcCchhHHHHHH
Confidence 11 0011001111000000000000 0000001112222333222222222222
Q ss_pred HHHHHHHHHHHHHHHHhc-CC--CeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEe
Q psy13453 157 YLRKHISLAKKFADLVEQ-DD--RFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVK 233 (764)
Q Consensus 157 ~i~~~i~lA~~l~~~I~~-~p--~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~ 233 (764)
+.++..+..+++.+.+++ .+ ++++..+..-..+.+++... ..+ ..++.++|.+.|.++...
T Consensus 333 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~--------------~~~--~~~l~~~l~~~gi~v~~g 396 (444)
T 3if2_A 333 IKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDL--------------PIS--TLDLYERLKAKGTLIVPS 396 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTC--------------SSC--HHHHHHHHHHTTEECEEG
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCC--------------CCC--HHHHHHHHHHCCeEEecc
Confidence 222334455566666655 44 35655443333444444210 111 246778888889765543
Q ss_pred cee--C--------CeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHc
Q psy13453 234 GSF--Q--------DRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLR 272 (764)
Q Consensus 234 t~l--~--------g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~ 272 (764)
... . +..++|+++.. ++++++.+++.|.++.+++.+
T Consensus 397 ~~~~~~~~~~~~~~~~~~iRis~~~---~~e~i~~~l~~l~~~~~~~~~ 442 (444)
T 3if2_A 397 EYFFPGVDVSDYQHAHECIRMSIAA---DEQTLIDGIKVIGEVVRELYD 442 (444)
T ss_dssp GGSCTTCCCTTCSGGGSEEEEESSS---CHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhcCCCCCcccccCCCeEEEEEeC---CHHHHHHHHHHHHHHHHHHHc
Confidence 322 1 13589998875 899999999999999887764
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0026 Score=69.46 Aligned_cols=219 Identities=8% Similarity=-0.058 Sum_probs=124.2
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCC-CCCcccHHHHHHHHHHHhhCCCCc-EEEEeeC-CcccccccCchhhh---c---
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLP-DSEWLAYLTLRTIYESFRKSFLCP-MCSGYCG-RTLHQDIQSLNAPV---S--- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd-~~~rmD~~aLe~~I~~~~~~G~~p-~~VatAG-TT~~G~iDpi~~ia---~--- 90 (764)
.+.+...++...|... +.+|++ +++.+|+++|+++|++....+ +. +++-+.+ ..++|.+=|.+++. +
T Consensus 135 ~~~~~~~~~~~~g~~~---~~v~~~~~~~~~d~~~l~~~l~~~~~~~-~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~ 210 (418)
T 3rq1_A 135 YWGAYRVICSDTGRTL---VTYSLFDEHNNFNHEAFQNRVNELAAKQ-TNVVVIFNTPGNNPTGYSIEDKDWDSILNFLK 210 (418)
T ss_dssp CCTHHHHHHHHTTCEE---EEECSBCTTSSBCHHHHHHHHHHHHHHC-SEEEEEEECSSCTTTCCCCCHHHHHHHHHHHH
T ss_pred CchhHHHHHHHcCCEE---EEEeeeCCCCCcCHHHHHHHHHHhhccC-CCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 3456778899999877 999995 568999999999998743222 23 3455556 89999998876633 2
Q ss_pred --------CCCceeccccccc-cc-----e--------------eeeecCCCccc-cccccccccC---Cc---------
Q psy13453 91 --------NGPLKVGGVLRRV-YS-----S--------------CLVPRGQKSLR-TTVLFHFLFQ---HW--------- 129 (764)
Q Consensus 91 --------~~wlHVDa~l~~~-y~-----s--------------~ll~rd~~~l~-~~~s~~~d~~---d~--------- 129 (764)
++++.+|.+.... +. + +++..-.+.+- ..+...+-.. +.
T Consensus 211 ~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~ 290 (418)
T 3rq1_A 211 DLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEV 290 (418)
T ss_dssp HHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHH
T ss_pred HhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHH
Confidence 6788999864111 10 0 01101111110 0000000000 00
Q ss_pred ---ccCCC-CcccHHHHHHHHHHccHH----HHH----HHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccc
Q psy13453 130 ---QIPLG-RRFRALKLWMTLRSYGLK----GLQ----AYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRF 197 (764)
Q Consensus 130 ---tle~S-Rr~~ALklWatL~~lG~e----Gy~----~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~ 197 (764)
...++ -....+..++....+... .|. ++.++.-+..+++.+.+++. ++++. +|+-+...|--.+
T Consensus 291 ~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~-- 366 (418)
T 3rq1_A 291 NKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQV-GLPML-PYRGGFFITIPTD-- 366 (418)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCC-CCCSSSEEEEECT--
T ss_pred HHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCC-CCCceEEEEcCCC--
Confidence 00000 012233334444444322 132 34455566777888888876 77654 5555555542110
Q ss_pred cccccccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 198 WDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 198 ~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
+ ..++.+.|.+.|.++... ..++|++++ .+++++++.+++.|+++.+++
T Consensus 367 -------------~----~~~~~~~l~~~gi~v~~g-----~~~iRis~~--~~~~~~i~~~~~~l~~~l~~~ 415 (418)
T 3rq1_A 367 -------------S----ANAICEELKKEHIYVIAL-----ANGIRIAAC--GIPKCQMTGLAEKIYNAMKSL 415 (418)
T ss_dssp -------------T----HHHHHHHHHHTTEECEEC-----SSEEEEEGG--GSCHHHHTTHHHHHHHHHHHT
T ss_pred -------------C----HHHHHHHHHhCCEEEecC-----CCCeEEEEe--cCCHHHHHHHHHHHHHHHHHH
Confidence 1 135677888888755432 356999866 458899999999999887654
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00084 Score=72.91 Aligned_cols=210 Identities=10% Similarity=0.010 Sum_probs=118.6
Q ss_pred eeeeHHHHHhhcCCC---------CCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCccccc----ccCch
Q psy13453 20 LIYESFKATHSLSGT---------PDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQD----IQSLN 86 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~---------~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~----iDpi~ 86 (764)
.|-+...++.+.|.. ...++.+|.+ |+++|+++|++. +-+++.+-++.++|. .++++
T Consensus 138 yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~-----d~~~l~~~l~~~-----~~~v~~~~~~nptG~~~~~~~~l~ 207 (397)
T 2ord_A 138 FHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFN-----NVEDLRRKMSED-----VCAVFLEPIQGESGIVPATKEFLE 207 (397)
T ss_dssp CCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECTT-----CHHHHHHHCCTT-----EEEEEECSEECTTTCEECCHHHHH
T ss_pred cCCCchhhhhccCChhhccccCCCCCCeeEecCC-----CHHHHHHHhhcC-----eEEEEEecccCCCCcccCCHHHHH
Confidence 455556677777754 1235777764 899999988642 224455568889998 37888
Q ss_pred hhhc-----CCCceeccccccc-cc-------------eeeeecCCCccccccccc-----cccCCcccC---CCC--cc
Q psy13453 87 APVS-----NGPLKVGGVLRRV-YS-------------SCLVPRGQKSLRTTVLFH-----FLFQHWQIP---LGR--RF 137 (764)
Q Consensus 87 ~ia~-----~~wlHVDa~l~~~-y~-------------s~ll~rd~~~l~~~~s~~-----~d~~d~tle---~SR--r~ 137 (764)
++++ ++++++|.+.... +. .++.+ .+.+..-+... .+.. .+. .+. ..
T Consensus 208 ~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~s~--sK~~~~G~r~G~~~~~~~~~--~l~~~~~~~~~~~ 283 (397)
T 2ord_A 208 EARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVLTT--AKGLGGGVPIGAVIVNERAN--VLEPGDHGTTFGG 283 (397)
T ss_dssp HHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEE--CGGGGTTSCCEEEEECSTTC--CCCTTSSCCSSTT
T ss_pred HHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCCeeee--ccccCCCcCeEEEEEchHhc--ccCCCCcCCCCCC
Confidence 8775 8999999965311 10 01111 11111000000 0111 111 011 22
Q ss_pred cHHHH---HHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcC----CCeEEeCCCCceeEEEEeeccccccccccccCccC
Q psy13453 138 RALKL---WMTLRSYGLKGLQAYLRKHISLAKKFADLVEQD----DRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISF 210 (764)
Q Consensus 138 ~ALkl---WatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~----p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~ 210 (764)
..+.. .++|+.+.. .++.++..++++++.+.|++. +.+.. .++.-+++.|++..
T Consensus 284 ~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~g~~~~~~~~~--------------- 344 (397)
T 2ord_A 284 NPLACRAGVTVIKELTK---EGFLEEVEEKGNYLMKKLQEMKEEYDVVAD-VRGMGLMIGIQFRE--------------- 344 (397)
T ss_dssp CHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEE-EEEETTEEEEEECT---------------
T ss_pred CHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHhCCceEE-EEEEeEEEEEEECC---------------
Confidence 33433 444554443 356677777888888888764 32221 23344566665531
Q ss_pred CccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 211 GDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 211 ~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
..+ ..++.++|.+.|...... +..++|+++ ...+++++++.+++.|+++.++
T Consensus 345 ~~~--~~~l~~~l~~~gi~v~~~----~~~~iRis~-~~~~~~e~i~~~~~~l~~~l~~ 396 (397)
T 2ord_A 345 EVS--NREVATKCFENKLLVVPA----GNNTIRFLP-PLTVEYGEIDLAVETLKKVLQG 396 (397)
T ss_dssp TSC--HHHHHHHHHHTTEECEEE----TTTEEEECC-CTTCCHHHHHHHHHHHHHHHHT
T ss_pred hHH--HHHHHHHHHHCCCEEccC----CCCEEEEEC-CcCCCHHHHHHHHHHHHHHHhh
Confidence 001 246788888888754332 356899975 3467899999999999887643
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0059 Score=73.70 Aligned_cols=176 Identities=14% Similarity=-0.029 Sum_probs=91.7
Q ss_pred HHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCC-CCCccccccCceEEEecCCcchhH
Q psy13453 566 LVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKN-PSLTENDIRNKLVAYTSDQSNSSV 644 (764)
Q Consensus 566 ~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~-~~~~~~~~~~~~vi~~S~~aH~Sv 644 (764)
++.+.|+++++-+. ....+|+++|||||-.|+++|+.++....+... ++ .++..+.-+|.....-|-+.
T Consensus 428 ~Lae~L~~~~p~~~--------l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~--~~~~~r~~iI~~~~syHG~T 497 (831)
T 4a0g_A 428 KCAELLLDGVGKGW--------ASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATE--EEKHIVVKVIALRGSYHGDT 497 (831)
T ss_dssp HHHHHHHHTTTTTT--------CCEEEEESSHHHHHHHHHHHHHHHHHHTTTC-----------CCEEEEEETTCCCCSS
T ss_pred HHHHHHHHhCCCCC--------CCEEEECCChhHHHHHHHHHHHHHHHhhcCCCcccc--ccccCccEEEEecCCcccCc
Confidence 45566777765220 024689999999999999999543322211100 00 00001123555667778777
Q ss_pred HHHHHhCCCc----------------------------eEEEecCCCCc---------cc------------------HH
Q psy13453 645 EKSAIIGDVP----------------------------VRQLRSDDNGV---------LR------------------GD 669 (764)
Q Consensus 645 ~kAa~~lGl~----------------------------v~~Vp~d~~g~---------md------------------~~ 669 (764)
.-++.+.|.. +..+++....+ -+ .+
T Consensus 498 ~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (831)
T 4a0g_A 498 LGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSA 577 (831)
T ss_dssp HHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHH
T ss_pred eeeeeccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHH
Confidence 7777765531 11222211000 01 25
Q ss_pred HHHHHHHHhh--hcCCCceEEEEeec--cCCcccccc----HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCC
Q psy13453 670 ALLTAVKEDL--AKGLIPCCLIATLG--TTGTCAFDN----LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLE 741 (764)
Q Consensus 670 ~Le~~I~~~~--~~G~~p~~VvataG--TT~~GaiDp----l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie 741 (764)
+|++.|++.. ..+..+.+|+ .=+ ....|.+-+ +++|+++|++||++|++|-++.|+-..-..+.....|+
T Consensus 578 ~le~~l~~~~~~~~~~~iaavi-~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv- 655 (831)
T 4a0g_A 578 YLSKHLQEHSGVRQSAHVGALI-IEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGC- 655 (831)
T ss_dssp HHHHHC---------CEEEEEE-ECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSS-
T ss_pred HHHHHHHhhhhhcCCCcEEEEE-EecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCC-
Confidence 6777765421 1122333333 222 233455544 99999999999999999988776422222222222355
Q ss_pred cccEEEEcCCccCC
Q psy13453 742 YVDSFDFNTHKWLL 755 (764)
Q Consensus 742 ~aDSit~d~HK~l~ 755 (764)
..|.+| +-|.++
T Consensus 656 ~PDiit--lsK~L~ 667 (831)
T 4a0g_A 656 KPDIAC--FAKLLT 667 (831)
T ss_dssp CCSEEE--ECGGGG
T ss_pred CCcEEE--Eecccc
Confidence 468776 457764
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.019 Score=62.57 Aligned_cols=234 Identities=12% Similarity=-0.011 Sum_probs=122.3
Q ss_pred eeeeHHHHHhhcCCC----------CCCeEEecCCC-----CCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCccccccc
Q psy13453 20 LIYESFKATHSLSGT----------PDQVRLSGLPD-----SEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQ 83 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~----------~~~v~~Vpvd~-----~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iD 83 (764)
.|-+...++.+.|.. ...++.||++. ++.+|+++|+++|++.. .+..+-+ +.+.-..++|.+-
T Consensus 138 y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~~~v~~~p~~~ntG~~~ 216 (426)
T 1sff_A 138 YHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDA-APEDIAAIVIEPVQGEGGFYA 216 (426)
T ss_dssp CCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTC-CGGGEEEEEECSBCTTTTSCB
T ss_pred cCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhcc-CCCceEEEEEecccCCCCccc
Confidence 444455666666653 12478899874 34689999999997521 0112333 3433223389655
Q ss_pred C----chhhhc-----CCCceeccccccc-cce-ee---eec-CCC--cccccccc----cc--------c-cCCcccCC
Q psy13453 84 S----LNAPVS-----NGPLKVGGVLRRV-YSS-CL---VPR-GQK--SLRTTVLF----HF--------L-FQHWQIPL 133 (764)
Q Consensus 84 p----i~~ia~-----~~wlHVDa~l~~~-y~s-~l---l~r-d~~--~l~~~~s~----~~--------d-~~d~tle~ 133 (764)
| ++++++ ++++++|...... +.+ .. ... ..+ ++...+.. .+ + +.......
T Consensus 217 ~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~GlriG~~~~~~~~~~~l~~~~~~~ 296 (426)
T 1sff_A 217 SSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGG 296 (426)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEEEECGGGGTSSCCEEEEEEHHHHTTSCTTSBCC
T ss_pred CCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhhhcCCCCCEEEEcccccCCCceEEEEEcHHHHhhhccCCcCc
Confidence 5 666655 8999999965311 100 00 000 000 01111110 00 0 11001111
Q ss_pred CCcccHH---HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhc----CCCeEEeCCCCceeEEEEeecccccccccccc
Q psy13453 134 GRRFRAL---KLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQ----DDRFELVCPPSMGLVCFRLKVRFWDKLDNLFG 206 (764)
Q Consensus 134 SRr~~AL---klWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~----~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~ 206 (764)
+-....+ .+.++|+.+..+ +..++..++.+++.+.+++ .+.+.. .+|.-+.+.|++.+....
T Consensus 297 ~~~~~~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~------- 365 (426)
T 1sff_A 297 TYAGNPIACVAALEVLKVFEQE---NLLQKANDLGQKLKDGLLAIAEKHPEIGD-VRGLGAMIAIELFEDGDH------- 365 (426)
T ss_dssp SSSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHTCTTEEE-EEEETTEEEEEEBGGGCT-------
T ss_pred CCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCeEE-EEEEEEEEEEEEecCccc-------
Confidence 2223334 345555665444 3455666677777777765 443332 234455666766421000
Q ss_pred CccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 207 TISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 207 ~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
......-..++.++|.++|.++..... ...++|+++ ...+++++++.+++.|+++.+++
T Consensus 366 --~~~~~~~~~~l~~~l~~~gi~v~~~~~--~~~~iRi~~-~~~~~~~~i~~~~~~l~~~l~~~ 424 (426)
T 1sff_A 366 --NKPDAKLTAEIVARARDKGLILLSCGP--YYNVLRILV-PLTIEDAQIRQGLEIISQCFDEA 424 (426)
T ss_dssp --TSBCHHHHHHHHHHHHHTTEECEEEST--TSCEEEECC-CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred --cCCChHHHHHHHHHHHHCCcEEecCCC--CCCEEEEEC-CccCCHHHHHHHHHHHHHHHHHH
Confidence 000111235788889889875544332 346899964 34678999999999999887664
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.007 Score=66.40 Aligned_cols=219 Identities=9% Similarity=-0.000 Sum_probs=127.5
Q ss_pred eeeeHHHHHhh-cCCCCCCeEEecCCC-CCcccHHHHHHHHHHHhhCCCCc-EEEEeeCCcccccccC---chhhhc---
Q psy13453 20 LIYESFKATHS-LSGTPDQVRLSGLPD-SEWLAYLTLRTIYESFRKSFLCP-MCSGYCGRTLHQDIQS---LNAPVS--- 90 (764)
Q Consensus 20 ~~YSv~KAa~~-LGl~~~~v~~Vpvd~-~~rmD~~aLe~~I~~~~~~G~~p-~~VatAGTT~~G~iDp---i~~ia~--- 90 (764)
.+.++..++.. .|... +.+|+++ ++.+|+++|+++|++. +..+ +++-+.++.++|.+=| ++++++
T Consensus 146 ~y~~~~~~~~~~~g~~~---~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~ 219 (430)
T 2x5f_A 146 NWGNYKLVFNTRNGANL---QTYPIFDKDGHYTTDSLVEALQSY---NKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIK 219 (430)
T ss_dssp CCTHHHHHHTTTTCCEE---EEECCBCTTSCBCSHHHHHHHHHC---CSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHH
T ss_pred cCccHHHHHHHhcCCeE---EEEeccCccCCcCHHHHHHHHHhc---CCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHH
Confidence 45677788888 88766 8899975 5789999999999862 1123 3455677999999877 555542
Q ss_pred -------CCCceeccccccc-cc-----eee-ee-c-CCC--------ccccccc-----cccccC---Cccc-------
Q psy13453 91 -------NGPLKVGGVLRRV-YS-----SCL-VP-R-GQK--------SLRTTVL-----FHFLFQ---HWQI------- 131 (764)
Q Consensus 91 -------~~wlHVDa~l~~~-y~-----s~l-l~-r-d~~--------~l~~~~s-----~~~d~~---d~tl------- 131 (764)
++++++|...... |. ++. -+ . ... ++...|. ..+-+. +..+
T Consensus 220 ~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~ 299 (430)
T 2x5f_A 220 ALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAK 299 (430)
T ss_dssp HHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHHHHHHH
T ss_pred hhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCeEEEEEecCCHHHHHHHHHH
Confidence 5688999864211 11 111 00 0 001 0000110 000011 1000
Q ss_pred --C----CCCcccHHHHHHHHHHcc-H----HHHHHHHHHHHHHHHHHHHHHh----cCCCeEEeCCCCcee-EEEEeec
Q psy13453 132 --P----LGRRFRALKLWMTLRSYG-L----KGLQAYLRKHISLAKKFADLVE----QDDRFELVCPPSMGL-VCFRLKV 195 (764)
Q Consensus 132 --e----~SRr~~ALklWatL~~lG-~----eGy~~~i~~~i~lA~~l~~~I~----~~p~~ell~~P~l~i-V~Fry~P 195 (764)
. .+-....+..+++...+- . +.+.++.++..+..+++.+.|+ +. ++++. .|+.+. +.+++.
T Consensus 300 ~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-g~~~~-~~~~g~~~~~~~~- 376 (430)
T 2x5f_A 300 VKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHS-HWQAY-DFNSGYFMAIKVH- 376 (430)
T ss_dssp HHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTT-TEEEC-CCCBSSEEEEEES-
T ss_pred HhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-Cceee-CCCceEEEEeCCC-
Confidence 0 111234444455544443 2 2223356666777888999998 43 68765 455554 445442
Q ss_pred cccccccccccCccCCccHHHHHHHHHHHh-cCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 196 RFWDKLDNLFGTISFGDNDLNKAVYDRIIA-RKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 196 ~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~-~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
+ .+ ..++.++|.+ .|..+... +..++|+++.. +++++++.+++.|+++.+++
T Consensus 377 -~--------------~~--~~~~~~~l~~~~gi~v~~g----~~~~iRis~~~--~~~e~i~~~~~~l~~~l~~~ 429 (430)
T 2x5f_A 377 -D--------------VD--PEALRKHLIDKYSIGVIAL----NATDIRIAFSC--VEKDDIPHVFDSIAKAIDDL 429 (430)
T ss_dssp -S--------------SC--HHHHHHHHHHHHCEECEEC----SSSEEEEEGGG--SCGGGHHHHHHHHHHHHHHH
T ss_pred -C--------------CC--HHHHHHHHHHhCCEEEecC----CCCeEEEEEec--CCHHHHHHHHHHHHHHHHhc
Confidence 1 01 2467888887 78754432 45689999874 48889999999999887654
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0037 Score=66.44 Aligned_cols=209 Identities=11% Similarity=0.059 Sum_probs=123.8
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecC-CCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc------CC
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGL-PDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS------NG 92 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpv-d~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~------~~ 92 (764)
.+.++..++..+|... +.||+ ++...+++ . ++-+++-+.++.++|.+=|++++.+ ..
T Consensus 98 ~~~~~~~~~~~~g~~~---~~v~~~~~~~~~~~--------~-----~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~ 161 (350)
T 3fkd_A 98 SFAEYEDACRMYEHEV---CFYPSNEDIGEADF--------S-----NMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDT 161 (350)
T ss_dssp CCHHHHHHHHHTTCEE---EEEETTSCGGGSCC--------T-----TCSEEEEESSCTTTCCCCCHHHHHHHHHHCTTS
T ss_pred CcHHHHHHHHHcCCeE---EEEecCCccccCcc--------C-----CCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCC
Confidence 4567788999999877 99999 76566666 1 1234545788999999988877654 35
Q ss_pred Cceeccccccc-c-ce------------eeeecCCCccc-cccccccccCCc-------ccCCCCcccHHHHHHHHHHcc
Q psy13453 93 PLKVGGVLRRV-Y-SS------------CLVPRGQKSLR-TTVLFHFLFQHW-------QIPLGRRFRALKLWMTLRSYG 150 (764)
Q Consensus 93 wlHVDa~l~~~-y-~s------------~ll~rd~~~l~-~~~s~~~d~~d~-------tle~SRr~~ALklWatL~~lG 150 (764)
++.+|.+.... + .. +++..-.+.+- ..+...+-..+. ....+-....+..+++...+-
T Consensus 162 ~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 241 (350)
T 3fkd_A 162 TFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIVANKDFMKRVAAFSTPWAVNALAIEAAKFILI 241 (350)
T ss_dssp EEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGGGCCEEEECCHHHHHHHHTTCCTTCSCHHHHHHHHHHHH
T ss_pred EEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhccCcchheEeEEeCHHHHHHHHHhCCCCCCCHHHHHHHHHHHh
Confidence 88888864211 0 00 00000001000 000000000000 000011334555565555543
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHh-cCc
Q psy13453 151 LKG-LQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIA-RKV 228 (764)
Q Consensus 151 ~eG-y~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~-~G~ 228 (764)
... |.+.+++..+.++++.+.|+++|++++. ++..+.+.++... . + ..++.++|.+ .|.
T Consensus 242 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~---------------~-~--~~~l~~~L~~~~gi 302 (350)
T 3fkd_A 242 HPAQFTLPIRKWQRNTVDFITALNRLDGVEVH-PSGTTFFLLRLKK---------------G-T--AAELKKYMLEEYNM 302 (350)
T ss_dssp CTTTTCCCHHHHHHHHHHHHHHHHHSTTEEEC-CCSSSEEEEEESS---------------S-C--HHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEC-CCCCcEEEEECCC---------------C-C--HHHHHHHHHHHCCE
Confidence 333 6666777779999999999999999974 5555666565531 1 1 2468888888 887
Q ss_pred EEEEeceeC--CeeEEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13453 229 IYIVKGSFQ--DRLFMRFAICSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 229 ~~vs~t~l~--g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~ 267 (764)
......... +..++|+++. ++++++.+++.|+++.
T Consensus 303 ~v~~g~~f~~~~~~~iRis~~----~~~~~~~l~~al~~~~ 339 (350)
T 3fkd_A 303 LIRDASNFRGLDESYVRITTQ----RPAQNQLFIKALETFL 339 (350)
T ss_dssp ECEECTTSTTCCTTEEEEECC----CHHHHHHHHHHHHHHH
T ss_pred EEEeCccCCCCCCCEEEEEcC----CHHHHHHHHHHHHHHH
Confidence 655443332 3578999865 6788999998888765
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0035 Score=67.15 Aligned_cols=210 Identities=10% Similarity=-0.031 Sum_probs=121.7
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccC---chhhhc-----C
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQS---LNAPVS-----N 91 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDp---i~~ia~-----~ 91 (764)
.|.++..++...|... +.+|+++++.+++ +|++++.+.. -+++-+.++.++|.+=| +.++++ +
T Consensus 117 ~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~-~l~~~~~~~~-----~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~ 187 (376)
T 3ezs_A 117 FYQIYEGAAKFIKAKS---LLMPLTKENDFTP-SLNEKELQEV-----DLVILNSPNNPTGRTLSLEELISWVKLALKHD 187 (376)
T ss_dssp CCTHHHHHHHHTTCEE---EEEECCGGGTSCC-CCCHHHHHHC-----SEEEECSSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred CcHhHHHHHHHcCCEE---EEcccCCCCCcch-hHHhhhccCC-----CEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcC
Confidence 4667888999999877 9999987666777 8888887642 24544578999999866 444533 8
Q ss_pred CCceeccccccc-cc----e----------------eeeecCCCccc-ccccccc-----c----cCCcccCCCCcccHH
Q psy13453 92 GPLKVGGVLRRV-YS----S----------------CLVPRGQKSLR-TTVLFHF-----L----FQHWQIPLGRRFRAL 140 (764)
Q Consensus 92 ~wlHVDa~l~~~-y~----s----------------~ll~rd~~~l~-~~~s~~~-----d----~~d~tle~SRr~~AL 140 (764)
+++++|.+.... +. + +++..-.+.+- ..+...+ + +....-..+-....+
T Consensus 188 ~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (376)
T 3ezs_A 188 FILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGDSRLLEKYKAFRAYLGYTSANA 267 (376)
T ss_dssp CEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHHTTTCCCCCHH
T ss_pred cEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCccceeEEEeeCHHHHHHHHHHHhhhcCCCChH
Confidence 999999964321 10 0 11111111110 0000000 0 000000011123334
Q ss_pred HHHHHHHHcc-HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEE-EEeeccccccccccccCccCCccHHHHH
Q psy13453 141 KLWMTLRSYG-LKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVC-FRLKVRFWDKLDNLFGTISFGDNDLNKA 218 (764)
Q Consensus 141 klWatL~~lG-~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~-Fry~P~~~~~~~~~~~~~~~~~d~~n~~ 218 (764)
..++....+- .+.+.++.++..+..+++.+.++ ++. .|.-+... +++. + ..+
T Consensus 268 ~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~---~~~---~~~~~~~~~~~~~------------------~--~~~ 321 (376)
T 3ezs_A 268 IQKASEAAWLDDRHAEFFRNIYANNLKLARKIFK---NTL---IYPYSFYVYLPVQ------------------N--GEN 321 (376)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHST---TCC---CCSBSSEEEEECS------------------C--HHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhc---CCC---CCCcceEEEEECC------------------C--HHH
Confidence 3444333332 33467777778888888888887 444 44444333 3321 0 246
Q ss_pred HHHHHHh-cCcEEEEecee----CCeeEEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13453 219 VYDRIIA-RKVIYIVKGSF----QDRLFMRFAICSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 219 L~~~L~~-~G~~~vs~t~l----~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~ 267 (764)
+.++|.+ .|..+...... .+..++|+++.. ++++++.+++.|+++.
T Consensus 322 ~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~---~~~~i~~~l~~l~~~l 372 (376)
T 3ezs_A 322 FAKTLYQNEGIITLPALYLGRNRIGADYVRLALVY---DTPLLEKPLEIIETYR 372 (376)
T ss_dssp HHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCS---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcC---CHHHHHHHHHHHHHHH
Confidence 7777877 78765543332 245789998763 8999999999998765
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0075 Score=66.20 Aligned_cols=225 Identities=10% Similarity=-0.004 Sum_probs=123.0
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEE-EeeCCcccccccCch---hhhc-----
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCS-GYCGRTLHQDIQSLN---APVS----- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~V-atAGTT~~G~iDpi~---~ia~----- 90 (764)
.+.+...+++..|... +.||+++++ +|+++|+++|++. ++-+++ -..+..++|.+=|.+ ++++
T Consensus 140 ~y~~~~~~~~~~g~~~---~~v~~~~~g-~d~~~l~~~l~~~----~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~ 211 (422)
T 3d6k_A 140 GYDRHFTITEHFGFEM---INVPMTDEG-PDMGVVRELVKDP----QVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAA 211 (422)
T ss_dssp CCHHHHHHHHHHTCEE---EEEEEETTE-ECHHHHHHHHTST----TEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSS
T ss_pred ccHHHHHHHHHcCCEE---EecCCCCCC-CCHHHHHHHHhcC----CCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhc
Confidence 4566778888999876 899998776 9999999999641 112344 456888999987766 4432
Q ss_pred -CCCceecccccc--c-cc-----eeee------ecCCCccccccc--------cccccCCc---------ccCCCCccc
Q psy13453 91 -NGPLKVGGVLRR--V-YS-----SCLV------PRGQKSLRTTVL--------FHFLFQHW---------QIPLGRRFR 138 (764)
Q Consensus 91 -~~wlHVDa~l~~--~-y~-----s~ll------~rd~~~l~~~~s--------~~~d~~d~---------tle~SRr~~ 138 (764)
++++++|..... . +. +++- ..+....-.+|+ ..+-+... .-..+-...
T Consensus 212 ~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~GlriG~~~~~~~l~~~l~~~~~~~~~~~~ 291 (422)
T 3d6k_A 212 PDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKITHAGSGVSFFASSKENIEWYASHANVRGIGPN 291 (422)
T ss_dssp TTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTTSCTTSSCEEEECCHHHHHHHHHHHHHHCSCCC
T ss_pred cCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhhcCcccceEEEEeCHHHHHHHHHHHHhhcCCCC
Confidence 678899986531 1 11 1100 000000000010 00000000 000011233
Q ss_pred HHHHHHHHHHccH-HHHHHHHHHH----HHHHHHHHHHHhc----CCCeEEeCCCCceeEEEEeeccccccccccccCcc
Q psy13453 139 ALKLWMTLRSYGL-KGLQAYLRKH----ISLAKKFADLVEQ----DDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTIS 209 (764)
Q Consensus 139 ALklWatL~~lG~-eGy~~~i~~~----i~lA~~l~~~I~~----~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~ 209 (764)
.+..+++...+-. ..+.+.+++. -+..+++.+.|++ .+++++..+..-..+.+++..
T Consensus 292 ~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~-------------- 357 (422)
T 3d6k_A 292 KLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVP-------------- 357 (422)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEEEST--------------
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEECCC--------------
Confidence 4555555555544 3333333332 2344455555543 344665443333344554421
Q ss_pred CCccHHHHHHHHHHHhcCcEEEE-ecee-----CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHc
Q psy13453 210 FGDNDLNKAVYDRIIARKVIYIV-KGSF-----QDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLR 272 (764)
Q Consensus 210 ~~~d~~n~~L~~~L~~~G~~~vs-~t~l-----~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~ 272 (764)
. + ...+.+.|.+.|.++.. .... .+..++|+++.. +++++++.+++.|+++.+++..
T Consensus 358 -~-~--~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~--~~~e~i~~~~~~l~~~l~~~~~ 420 (422)
T 3d6k_A 358 -G-T--ASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSL--PPVAELEVAMDGFATCVLMAAL 420 (422)
T ss_dssp -T-C--HHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSS--SCHHHHHHHHHHHHHHHHHHHH
T ss_pred -C-C--HHHHHHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCC--CCHHHHHHHHHHHHHHHHHHHh
Confidence 1 1 24577788888875543 1212 135789998876 7899999999999998876643
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0016 Score=72.46 Aligned_cols=232 Identities=8% Similarity=0.042 Sum_probs=123.3
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCC------------CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccc---cC
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPD------------SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDI---QS 84 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~------------~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~i---Dp 84 (764)
.|.++..++...|... +.||+++ ++.+|+++|+++|++. +-+++-+.++.++|.+ ++
T Consensus 151 ~y~~~~~~~~~~g~~~---~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~-----~~~v~l~~p~nptG~~~~~~~ 222 (447)
T 3b46_A 151 FFDQYIPNIELCGGKV---VYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSK-----TKAVIINTPHNPIGKVFTREE 222 (447)
T ss_dssp CCTTHHHHHHHTTCEE---EEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCTT-----EEEEEEESSCTTTCCCCCHHH
T ss_pred CchhHHHHHHHcCCEE---EEEeCCCccccccccccccCcccCHHHHHHhhccC-----CeEEEEeCCCCCCCcccCHHH
Confidence 4567788889999866 8899864 4689999999998632 2244456788999998 67
Q ss_pred chhhhc-----CCCceeccccccc-cc----eeeee----cCCC----ccccccc-----cccccC-Cccc---------
Q psy13453 85 LNAPVS-----NGPLKVGGVLRRV-YS----SCLVP----RGQK----SLRTTVL-----FHFLFQ-HWQI--------- 131 (764)
Q Consensus 85 i~~ia~-----~~wlHVDa~l~~~-y~----s~ll~----rd~~----~l~~~~s-----~~~d~~-d~tl--------- 131 (764)
++++++ ++++++|...... |+ ++.-+ .+.. ++...|. ..+-.. +..+
T Consensus 223 l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~riG~~~~~~~~l~~~l~~~~~ 302 (447)
T 3b46_A 223 LTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATGWRIGWVLSLNAELLSYAAKAHT 302 (447)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTTSCCEEEECSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcchhhEEEEeCCHHHHHHHHHHHh
Confidence 777765 8899999865321 11 10000 0000 0000000 000000 0000
Q ss_pred CCCCcccHHHHHH---HHHHcc-HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccC
Q psy13453 132 PLGRRFRALKLWM---TLRSYG-LKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGT 207 (764)
Q Consensus 132 e~SRr~~ALklWa---tL~~lG-~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~ 207 (764)
..+-....+..++ +|.... .+.+.++.++.-+..+++.+.|++. ++++..+..-..+.+++.............
T Consensus 303 ~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~- 380 (447)
T 3b46_A 303 RICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDEL-GLPYTAPEGTYFVLVDFSKVKIPEDYPYPE- 380 (447)
T ss_dssp HHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH-TCCEECCSBSSEEEEECTTCCCCTTCCCCG-
T ss_pred hccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeEEEEEecccccCcccccccc-
Confidence 0000112222223 333222 2336667777888889999999886 777664332333444442100000000000
Q ss_pred ccCCccHHHHHHHHHHH-hcCcEEEEeceeC-------CeeEEEEeccCCCCCHHHHHHHHHHHHH
Q psy13453 208 ISFGDNDLNKAVYDRII-ARKVIYIVKGSFQ-------DRLFMRFAICSSQTEESDVQLGWNEIRT 265 (764)
Q Consensus 208 ~~~~~d~~n~~L~~~L~-~~G~~~vs~t~l~-------g~~~LRi~v~np~Tt~e~i~~~l~~l~~ 265 (764)
......-..++.++|. +.|.++....... +..++|++++. +++++++.++.|++
T Consensus 381 -~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~~---~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 381 -EILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCK---DDAYLENAVERLKL 442 (447)
T ss_dssp -GGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECCS---CHHHHHHHHHHGGG
T ss_pred -ccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEeC---CHHHHHHHHHHHHH
Confidence 0000011256777776 4687544332221 24689999874 68899998888865
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0018 Score=71.49 Aligned_cols=140 Identities=17% Similarity=0.103 Sum_probs=87.6
Q ss_pred cCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCceecccccccc-
Q psy13453 31 LSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKVGGVLRRVY- 104 (764)
Q Consensus 31 LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHVDa~l~~~y- 104 (764)
+|+.. +.||.+ |+++|+++|+++ +-+++...++.++|.+-|++++++ +++++||......+
T Consensus 130 ~g~~~---~~v~~~-----d~~~l~~~i~~~-----~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~ 196 (400)
T 3nmy_A 130 AGLDF---SFVDLT-----DPAAFKAAIRAD-----TKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPML 196 (400)
T ss_dssp HCCEE---EEECTT-----SHHHHHHHCCTT-----EEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHH
T ss_pred cCeEE---EEECCC-----CHHHHHHHhccC-----CCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCccccc
Confidence 57765 777765 899999999753 224456778999999999999886 89999999542111
Q ss_pred ------c-eeeeecCCCcccc--------cccc-ccc----cCCcccCCCCcccHHHHHHHHHHccHHHHHHHHHHHHHH
Q psy13453 105 ------S-SCLVPRGQKSLRT--------TVLF-HFL----FQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISL 164 (764)
Q Consensus 105 ------~-s~ll~rd~~~l~~--------~~s~-~~d----~~d~tle~SRr~~ALklWatL~~lG~eGy~~~i~~~i~l 164 (764)
+ -+++..-.|.+.. .+.. ..+ +..+.-..+-....+..|+.++ |.+.+..++++..+.
T Consensus 197 ~~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~--~l~~l~~r~~~~~~~ 274 (400)
T 3nmy_A 197 QRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALR--GLKTLPLRMRAHCEN 274 (400)
T ss_dssp CCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHH--HHTTHHHHHHHHHHH
T ss_pred CChhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH--hHhHHHHHHHHHHHH
Confidence 0 1111111111110 0000 000 0000001122345567777776 456688899999999
Q ss_pred HHHHHHHHhcCCCeEEeCCCC
Q psy13453 165 AKKFADLVEQDDRFELVCPPS 185 (764)
Q Consensus 165 A~~l~~~I~~~p~~ell~~P~ 185 (764)
++++++.|+++|.++-+.-|.
T Consensus 275 a~~l~~~L~~~p~v~~V~~p~ 295 (400)
T 3nmy_A 275 ALALAQWLETHPAIEKVIYPG 295 (400)
T ss_dssp HHHHHHHHTTCTTEEEEECTT
T ss_pred HHHHHHHHHcCCCEeEEECCC
Confidence 999999999999988776554
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0081 Score=63.52 Aligned_cols=203 Identities=5% Similarity=-0.029 Sum_probs=117.9
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCc
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPL 94 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wl 94 (764)
.+.++..++..+|... +.+|+++++.+|+++| + ++-+++-+.++.++|.+=|.+++.+ + ++
T Consensus 105 ~y~~~~~~~~~~g~~~---~~v~~~~~~~~d~~~l-----~-----~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~l 170 (335)
T 1uu1_A 105 TYSCYRIFAKAVGAKF---LEVPLTKDLRIPEVNV-----G-----EGDVVFIPNPNNPTGHVFEREEIERILKTGA-FV 170 (335)
T ss_dssp SCHHHHHHHHHHTCEE---EECCCCTTSCCCCCCC-----C-----TTEEEEEESSCTTTCCCCCHHHHHHHHHTTC-EE
T ss_pred CcHHHHHHHHHcCCeE---EEeccCCCCCCCHHHc-----C-----CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-EE
Confidence 3556777888889876 8899988889999888 1 2224444667899999988777554 5 88
Q ss_pred eeccccccc-cce-----------eeeecCCCccc-cccccccccCCc-------ccCCCCcccHHHHHHHHHHcc-HHH
Q psy13453 95 KVGGVLRRV-YSS-----------CLVPRGQKSLR-TTVLFHFLFQHW-------QIPLGRRFRALKLWMTLRSYG-LKG 153 (764)
Q Consensus 95 HVDa~l~~~-y~s-----------~ll~rd~~~l~-~~~s~~~d~~d~-------tle~SRr~~ALklWatL~~lG-~eG 153 (764)
++|.+.... +.+ +++..-.+.+- .-+...+-+.+. ....+-....+..+++...+- .+.
T Consensus 171 i~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 250 (335)
T 1uu1_A 171 ALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVRLPFNVSYVSQMFAKVALDHREI 250 (335)
T ss_dssp EEECTTHHHHCCCCGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHSCTTCSCHHHHHHHHHHHHTHHH
T ss_pred EEECcchhhcchhHHHHhhhCCCEEEEecchhhcCCcccCeEEEEeCHHHHHHHHHhcCCCCcCHHHHHHHHHHhCCHHH
Confidence 999864210 000 11111111110 000000000000 000001233344444433332 246
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEe
Q psy13453 154 LQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVK 233 (764)
Q Consensus 154 y~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~ 233 (764)
+.++.++..+.++++.+.+++. ++++ .++..+.+.+++. . .-..++.++|.++|..+..
T Consensus 251 ~~~~~~~~~~~~~~l~~~L~~~-g~~~-~~~~~~~~~~~~~----------------~--~~~~~~~~~l~~~gi~v~~- 309 (335)
T 1uu1_A 251 FEERTKFIVEERERMKSALREM-GYRI-TDSRGNFVFVFME----------------K--EEKERLLEHLRTKNVAVRS- 309 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TCCB-CCCCSSEEEEECC----------------T--HHHHHHHHHHHHHTEEEEE-
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CcEE-cCCCCeEEEEECC----------------C--CCHHHHHHHHHHCCEEEEE-
Confidence 7788888889999999999987 6764 3445555555432 1 0124678888888875443
Q ss_pred ceeCCeeEEEEeccCCCCCHHHHHHHHHHHHH
Q psy13453 234 GSFQDRLFMRFAICSSQTEESDVQLGWNEIRT 265 (764)
Q Consensus 234 t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~ 265 (764)
+..++|+++. ++++++.+++.|++
T Consensus 310 ----~~~~iRis~~----~~~~i~~~~~~l~~ 333 (335)
T 1uu1_A 310 ----FREGVRITIG----KREENDMILRELEV 333 (335)
T ss_dssp ----ETTEEEEECC----CHHHHHHHHHHHHC
T ss_pred ----CCCeEEEEeC----CHHHHHHHHHHHHh
Confidence 2357999874 35778888887764
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.012 Score=63.34 Aligned_cols=214 Identities=8% Similarity=0.057 Sum_probs=120.2
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCC-CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchh---hhc-----
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPD-SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNA---PVS----- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~-~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~---ia~----- 90 (764)
.|.++..++..+|... +.||+++ .+.+|+++|+++|.+.. -+++-+.+..++|.+=|.++ +++
T Consensus 129 ~~~~~~~~~~~~g~~~---~~v~~~~~g~~~d~~~l~~~~~~~~-----~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~ 200 (396)
T 3jtx_A 129 FYQIYEGATLLGGGEI---HFANCPAPSFNPDWRSISEEVWKRT-----KLVFVCSPNNPSGSVLDLDGWKEVFDLQDKY 200 (396)
T ss_dssp CCHHHHHHHHHTTCEE---EEEECCTTTCCCCGGGSCHHHHHTE-----EEEEEESSCTTTCCCCCHHHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHcCCEE---EEeecCCCCCccCHHHHHHhhccCc-----EEEEEECCCCCCCCcCCHHHHHHHHHHHHHc
Confidence 3456777889999877 9999965 45799999999998632 24444578899999966555 443
Q ss_pred CCCceeccccccc-cc-----e---------------eeeecCCCc--cccccccccccCC---------cccCCCCccc
Q psy13453 91 NGPLKVGGVLRRV-YS-----S---------------CLVPRGQKS--LRTTVLFHFLFQH---------WQIPLGRRFR 138 (764)
Q Consensus 91 ~~wlHVDa~l~~~-y~-----s---------------~ll~rd~~~--l~~~~s~~~d~~d---------~tle~SRr~~ 138 (764)
++++++|...... +. + +++..-.+. +.+ +...+-..+ .....+-...
T Consensus 201 ~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~ 279 (396)
T 3jtx_A 201 GFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPG-LRSGFVAGDAELLKNFLLYRTYHGSAMS 279 (396)
T ss_dssp CCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGG-GCCEEEEECHHHHHHHHHHHHHHTCCCC
T ss_pred CCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcc-cceEEEEeCHHHHHHHHHHHhhcccCCC
Confidence 8899999964321 10 0 000000010 000 000000000 0000001122
Q ss_pred HHHHHHHHHHcc-HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCcee-EEEEeeccccccccccccCccCCccHHH
Q psy13453 139 ALKLWMTLRSYG-LKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGL-VCFRLKVRFWDKLDNLFGTISFGDNDLN 216 (764)
Q Consensus 139 ALklWatL~~lG-~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~i-V~Fry~P~~~~~~~~~~~~~~~~~d~~n 216 (764)
.+..+++...+- .+.+.++.++.-+..+++.+.+++. +.+ ..|.-+. +.+++. ..+ .
T Consensus 280 ~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~-~~~~~~~~~~~~~~----------------~~~--~ 338 (396)
T 3jtx_A 280 IPVQRASIAAWDDEQHVIDNRRLYQEKFERVIPILQQV--FDV-KLPDASFYIWLKVP----------------DGD--D 338 (396)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTT--SCC-CCCSSSSEEEEECT----------------TSC--H
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc--CCc-cCCCeeEEEEEECC----------------CCC--H
Confidence 233333332221 3556777777788888899999875 332 3444443 333331 001 2
Q ss_pred HHHHHHHHh-cCcEEEEecee--------CCeeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 217 KAVYDRIIA-RKVIYIVKGSF--------QDRLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 217 ~~L~~~L~~-~G~~~vs~t~l--------~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
.++.++|.+ .|..+...... .+..++|+++.. ++++++.+++.|.++
T Consensus 339 ~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~---~~~~i~~~l~~l~~~ 394 (396)
T 3jtx_A 339 LAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA---DVATCVKAAEDIVSL 394 (396)
T ss_dssp HHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC---CHHHHHHHHHHHHHH
Confidence 456677754 58755443322 235789998765 789999999988764
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.00018 Score=78.19 Aligned_cols=221 Identities=12% Similarity=0.007 Sum_probs=123.1
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCC-C--CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccC---chhhhc---
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLP-D--SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQS---LNAPVS--- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd-~--~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDp---i~~ia~--- 90 (764)
.|.+...++..+|... +.+|++ + ++++|+++|+++|++.. +-+++-+.++.++|.+=| ++++++
T Consensus 122 ~~~~~~~~~~~~g~~~---~~~~~~~~~g~~~~d~~~l~~~l~~~~----~~~v~~~~~~nptG~~~~~~~l~~l~~~~~ 194 (392)
T 3b1d_A 122 VYPPFARSVRLNNRKL---VSNSLKEENGLFQIDFEQLENDIVEND----VKLYLLCNPHNPGGRVWEREVLEQIGHLCQ 194 (392)
Confidence 4567778888888877 888885 3 36799999999997321 123434677888998744 565554
Q ss_pred --CCCceeccccccc-c-----ceeeee-c---CC----Cccccccc-----ccc------ccCC----cccCCC-Cccc
Q psy13453 91 --NGPLKVGGVLRRV-Y-----SSCLVP-R---GQ----KSLRTTVL-----FHF------LFQH----WQIPLG-RRFR 138 (764)
Q Consensus 91 --~~wlHVDa~l~~~-y-----~s~ll~-r---d~----~~l~~~~s-----~~~------d~~d----~tle~S-Rr~~ 138 (764)
++++++|...... + .++.-+ . +. .++...+. ..+ ++.+ .....+ -...
T Consensus 195 ~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (392)
T 3b1d_A 195 KHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVNNHHEVS 274 (392)
Confidence 7889999854211 1 011000 0 00 00111110 000 0000 000000 0112
Q ss_pred HHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEeCCCCceeEE-EEeeccccccccccccCccCCccH
Q psy13453 139 ALKLWMTLRSY--GLKGLQAYLRKHISLAKKFADLVEQ-DDRFELVCPPSMGLVC-FRLKVRFWDKLDNLFGTISFGDND 214 (764)
Q Consensus 139 ALklWatL~~l--G~eGy~~~i~~~i~lA~~l~~~I~~-~p~~ell~~P~l~iV~-Fry~P~~~~~~~~~~~~~~~~~d~ 214 (764)
.+..+++...+ +.+.+.++.++..+..+++.+.+++ .|++++. .|+-+.+. +++...+ .
T Consensus 275 ~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~i~~~~~~--------------~-- 337 (392)
T 3b1d_A 275 SLGYIATETAYRYGKPWLVALKAVLEENIQFAVEYFAQEAPRLKVM-KPQGTYLIWLDFSDYG--------------L-- 337 (392)
Confidence 33344333333 4556777777788888899999988 7888764 45555444 3332100 0
Q ss_pred HHHHHHHHHH-hcCcEEEEecee--CCeeEEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13453 215 LNKAVYDRII-ARKVIYIVKGSF--QDRLFMRFAICSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 215 ~n~~L~~~L~-~~G~~~vs~t~l--~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~ 267 (764)
-..++.++|. +.|..+...... .+..++|++++. +++++++.++.|+++.
T Consensus 338 ~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~---~~e~i~~~l~~l~~~l 390 (392)
T 3b1d_A 338 TDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAA---PKSLVEEICKRIVCCL 390 (392)
Confidence 1235677775 567755433222 245789998765 3678888888887653
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.01 Score=64.20 Aligned_cols=209 Identities=10% Similarity=-0.051 Sum_probs=113.6
Q ss_pred eeeeHHHHHhhcCCCC---------CCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccC----ch
Q psy13453 20 LIYESFKATHSLSGTP---------DQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQS----LN 86 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~---------~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDp----i~ 86 (764)
.|.+...++.+.|... ..++.+|. .|+++|+++|++. +-+++.+....++|.+-| ++
T Consensus 140 y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-----~d~~~l~~~i~~~-----~~~v~~~~~~~~tG~~~~~~~~l~ 209 (395)
T 1vef_A 140 FSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY-----NDVEALKRAVDEE-----TAAVILEPVQGEGGVRPATPEFLR 209 (395)
T ss_dssp CCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT-----TCHHHHHHHCCTT-----EEEEEECSEETTTTSEECCHHHHH
T ss_pred cCCCchhhhhhcCCcccccccCCCCCCeeEeCC-----CcHHHHHHHhccC-----EEEEEEeCccCCCCccCCCHHHHH
Confidence 4445556677666541 11333433 4899999998642 223345555667998766 77
Q ss_pred hhhc-----CCCceeccccccc-c-ce---eeee---cCCCcccccccc----c--------cc-cCCcccCCCCcccHH
Q psy13453 87 APVS-----NGPLKVGGVLRRV-Y-SS---CLVP---RGQKSLRTTVLF----H--------FL-FQHWQIPLGRRFRAL 140 (764)
Q Consensus 87 ~ia~-----~~wlHVDa~l~~~-y-~s---~ll~---rd~~~l~~~~s~----~--------~d-~~d~tle~SRr~~AL 140 (764)
++++ ++++++|++.... + +. +-.. .|--++...+.. . .+ +.......+-....+
T Consensus 210 ~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~g~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~ 289 (395)
T 1vef_A 210 AAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPL 289 (395)
T ss_dssp HHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTTSSCEEEEEEHHHHHTSCTTSSCCSSTTCHH
T ss_pred HHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCCEEEEcccccCCCceEEEEehHHHHhhhccCCcCCCcCCCHH
Confidence 7775 8999999975310 0 00 0000 000011111110 0 00 111001111122333
Q ss_pred ---HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCC--eEEeCCCCceeEEEEeeccccccccccccCccCCccHH
Q psy13453 141 ---KLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDR--FELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDL 215 (764)
Q Consensus 141 ---klWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~--~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~ 215 (764)
.+.++++.+.. .++.++..++++++.+.+++.+. +.. .++.-+++.|++.. .
T Consensus 290 ~~~a~~~al~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~g~~~~~~~~~---------------~---- 346 (395)
T 1vef_A 290 AMAAGVAAIRYLER---TRLWERAAELGPWFMEKLRAIPSPKIRE-VRGMGLMVGLELKE---------------K---- 346 (395)
T ss_dssp HHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHTSCCTTEEE-EEEETTEEEEEESS---------------C----
T ss_pred HHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHhhcCceEE-EEEEEEEEEEEEcC---------------h----
Confidence 34555665544 34667777889999999988643 111 12233456665421 1
Q ss_pred HHHHHHHHH-hcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 216 NKAVYDRII-ARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 216 n~~L~~~L~-~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
..++.++|. +.|..+... +..++|+++ +..+++++++.+++.|+++
T Consensus 347 ~~~l~~~l~~~~gi~v~~~----~~~~iRi~~-~~~~~~~~i~~~~~~l~~~ 393 (395)
T 1vef_A 347 AAPYIARLEKEHRVLALQA----GPTVIRFLP-PLVIEKEDLERVVEAVRAV 393 (395)
T ss_dssp SHHHHHHHHHHHCEECEES----STTEEEECC-CTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCeEEecC----CCCEEEEeC-CCCCCHHHHHHHHHHHHHH
Confidence 246777887 788654332 456899964 4577899999999998775
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.01 Score=65.92 Aligned_cols=120 Identities=11% Similarity=0.036 Sum_probs=84.1
Q ss_pred cEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCc-eEEEec--CCCCcc
Q psy13453 590 GGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVP-VRQLRS--DDNGVL 666 (764)
Q Consensus 590 ~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~-v~~Vp~--d~~g~m 666 (764)
..+-|.|||.|...|+........ .+.-.|++++=+-.+-....+..|.. |...+. ++++.+
T Consensus 111 ~~~qt~ggtga~~~a~~~l~~~~~---------------~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~~~ 175 (420)
T 4h51_A 111 VAVQTLSGTGAVSLGAKLLTRVFD---------------AETTPIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTVSL 175 (420)
T ss_dssp EEEEEEHHHHHHHHHHHHHTTTSC---------------TTTSCEEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGTEE
T ss_pred ceeeecCchHHHHHHHHHHHHhcC---------------CCCCEEEEecCCchhHHHHHHHcCCeEEEeeccccccccCC
Confidence 456689999998777654432211 12224666665555555556778886 444333 256779
Q ss_pred cHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccHHHHHHHHHhcCCEEEEeccccccc
Q psy13453 667 RGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLEELGPICQEYNIWLHVDAAYAGSA 727 (764)
Q Consensus 667 d~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~eIa~i~~~~glwLHVDaA~Gg~~ 727 (764)
|.+.+.+.++... ....+++.+..++.||.. +.+++|+++|+++++|+..|-+|.+..
T Consensus 176 d~~~~~~~l~~~~---~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~ 236 (420)
T 4h51_A 176 NFEGMKKDILAAP---DGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYA 236 (420)
T ss_dssp CHHHHHHHHHHSC---SSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTT
T ss_pred CHHHHHHHHhccC---CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhc
Confidence 9999999887643 235677777888999988 678889999999999999999998854
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.002 Score=70.11 Aligned_cols=213 Identities=10% Similarity=0.010 Sum_probs=122.9
Q ss_pred eeeeHHHHHhhcCCC-CCCeEEecCC--CCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccc---cCchhhhc--
Q psy13453 20 LIYESFKATHSLSGT-PDQVRLSGLP--DSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDI---QSLNAPVS-- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~-~~~v~~Vpvd--~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~i---Dpi~~ia~-- 90 (764)
.|.++..++..+|.. . +.+|++ +++.+|+++|+++|++. +..+.+ +-+.+..++|.+ +.++++++
T Consensus 139 ~y~~~~~~~~~~g~~~~---~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~ 212 (412)
T 1ajs_A 139 TWENHNGVFTTAGFKDI---RSYRYWDTEKRGLDLQGFLSDLENA---PEFSIFVLHACAHNPTGTDPTPEQWKQIASVM 212 (412)
T ss_dssp CCTHHHHHHHHTTCSCE---EEEECEETTTTEECHHHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHcCCcee---EEEeeecCCCCccCHHHHHHHHHhC---CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHH
Confidence 456778889999886 5 889994 67899999999999763 112345 468888999998 44555554
Q ss_pred ---CCCceeccccccc-cc-------e-----------eeeecCCCcccc-ccccccccC---Ccc------------cC
Q psy13453 91 ---NGPLKVGGVLRRV-YS-------S-----------CLVPRGQKSLRT-TVLFHFLFQ---HWQ------------IP 132 (764)
Q Consensus 91 ---~~wlHVDa~l~~~-y~-------s-----------~ll~rd~~~l~~-~~s~~~d~~---d~t------------le 132 (764)
++++++|.+.... +. + +++..-.+.+-. -+...+-+. +.. ..
T Consensus 213 ~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~ 292 (412)
T 1ajs_A 213 KRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVR 292 (412)
T ss_dssp HHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred HHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 8899999863111 10 1 011111111100 000000010 100 00
Q ss_pred C-CCcccHHHHHHHHHHc--c------HHHHHHHHHHHHHHHHHHHHHHhcCC---CeEEeCCCCceeEEEEeecccccc
Q psy13453 133 L-GRRFRALKLWMTLRSY--G------LKGLQAYLRKHISLAKKFADLVEQDD---RFELVCPPSMGLVCFRLKVRFWDK 200 (764)
Q Consensus 133 ~-SRr~~ALklWatL~~l--G------~eGy~~~i~~~i~lA~~l~~~I~~~p---~~ell~~P~l~iV~Fry~P~~~~~ 200 (764)
. .-....+..+++...+ + .+.+.++.++..+..+++.+.|++.. +++++ .|.-+...|-
T Consensus 293 ~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~-------- 363 (412)
T 1ajs_A 293 VTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHI-TDQIGMFSFT-------- 363 (412)
T ss_dssp TTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHH-HHCCSSEEEC--------
T ss_pred cccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEE-cCCCceEEEe--------
Confidence 0 0112333344443333 2 34677788888889999999999864 46543 3444455551
Q ss_pred ccccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 201 LDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 201 ~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
+.+ ...+...+.+.|..+. . .+|+++.. +++++++.+++.|+++.++
T Consensus 364 ----------~~~--~~~~~~~l~~~gv~v~-~-------~~Ris~~~--~~~~~i~~~~~~l~~~l~~ 410 (412)
T 1ajs_A 364 ----------GLN--PKQVEYLINQKHIYLL-P-------SGRINMCG--LTTKNLDYVATSIHEAVTK 410 (412)
T ss_dssp ----------CCC--HHHHHHHHHTTCEECC-T-------TSEEEGGG--CCTTTHHHHHHHHHHHHHH
T ss_pred ----------CCC--HHHHHHHHHhCCEEec-C-------CcEEEeee--CCHHHHHHHHHHHHHHHHh
Confidence 111 2345555667786432 1 26998873 4788999999999887654
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0012 Score=71.30 Aligned_cols=75 Identities=4% Similarity=-0.109 Sum_probs=57.8
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecC--CCCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccc---cCchhhhc---
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGL--PDSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDI---QSLNAPVS--- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpv--d~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~i---Dpi~~ia~--- 90 (764)
.|.++..++...|... +.+|+ ++++.+|+++|+++|++.. ..+.+ +-+.+..++|.+ +++.++++
T Consensus 130 ~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~d~~~l~~~l~~~~---~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~ 203 (397)
T 3fsl_A 130 TWENHVAIFAGAGFEV---STYPWYDEATNGVRFNDLLATLKTLQ---AGSIVLLHPCCHNPTGADLTNDQWDAVIEILK 203 (397)
T ss_dssp CCHHHHHHHHHTTCCE---EEECCEETTTTEECHHHHHHHHTTCC---TTCEEEECSSSCTTTCCCCCHHHHHHHHHHHH
T ss_pred CchhHHHHHHHcCCce---EEEeeeeccCCcCcHHHHHHHHHhCC---CCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHH
Confidence 4567788899999877 99999 4688999999999997531 12344 567788999998 66667665
Q ss_pred --CCCceecccc
Q psy13453 91 --NGPLKVGGVL 100 (764)
Q Consensus 91 --~~wlHVDa~l 100 (764)
++++++|...
T Consensus 204 ~~~~~li~De~~ 215 (397)
T 3fsl_A 204 ARELIPFLDIAY 215 (397)
T ss_dssp HTTCEEEEEESC
T ss_pred hCCEEEEEecCc
Confidence 8899999853
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0049 Score=68.71 Aligned_cols=174 Identities=10% Similarity=-0.031 Sum_probs=101.3
Q ss_pred HHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEee----CCcccccccCchhhhc-------CCCc
Q psy13453 26 KATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYC----GRTLHQDIQSLNAPVS-------NGPL 94 (764)
Q Consensus 26 KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatA----GTT~~G~iDpi~~ia~-------~~wl 94 (764)
+++...|+.. +.||+++++++|+++|+++|++. .++-+++... ++-++|.+.|++++++ ++++
T Consensus 142 ~~l~~~G~~~---~~v~~~~~g~~D~e~l~~~l~~~---~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~l 215 (427)
T 3i16_A 142 GSLKEFGINY---KQVDLKEDGKPNLEEIEKVLKED---ESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIIC 215 (427)
T ss_dssp CCTGGGTCEE---EECCCCTTSSCCHHHHHHHHHTC---TTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEE
T ss_pred HHHHHcCCEE---EEecCccCCCcCHHHHHHHhhCC---CCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEE
Confidence 5566678766 89999999999999999999831 0122443333 7889999999999764 6899
Q ss_pred eecccccccc--------c-eeeeecCCCccccc------cc-cccc----cCC--cccCCCCcccH-HH-HHHHHHHcc
Q psy13453 95 KVGGVLRRVY--------S-SCLVPRGQKSLRTT------VL-FHFL----FQH--WQIPLGRRFRA-LK-LWMTLRSYG 150 (764)
Q Consensus 95 HVDa~l~~~y--------~-s~ll~rd~~~l~~~------~s-~~~d----~~d--~tle~SRr~~A-Lk-lWatL~~lG 150 (764)
+||.+....+ + -+++..-.+.+-.. +- ...+ ... +....+....+ +. .|+.++ |
T Consensus 216 ivD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~l~--g 293 (427)
T 3i16_A 216 FVDNCYGEFMDTKEPTDVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGGECGSTFGVVRSMYQ--G 293 (427)
T ss_dssp EEECTTTTTSSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHH--H
T ss_pred EEECCCccccccCCccccCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccCccCccCCccHHHHHHHHH--H
Confidence 9999642221 0 11221111221110 00 0000 000 00011110111 22 455544 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCce-----eEEEEeeccccccccccccCccCCccHHHHHHHHHHHh
Q psy13453 151 LKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMG-----LVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIA 225 (764)
Q Consensus 151 ~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~-----iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~ 225 (764)
.+-...++++..+.|+++++.++++ ++++... ... +++|... ..+-..++.+.|+.
T Consensus 294 l~~~~~r~~~~~~~a~~la~~L~~~-g~~V~p~-~~~~~~~~i~~i~l~-----------------~~~~~~~f~~~l~~ 354 (427)
T 3i16_A 294 LFLAPHISMEALKGAILCSRIMELA-GFEVMPK-YDEKRSDIIQSIKFN-----------------DKDKLIEFCKGIQT 354 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-TCEEESC-TTSCCSSSCEEEECS-----------------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CCeecCC-CCCCCccEEEEEEEC-----------------CHHHHHHHHHHHhh
Confidence 4566789999999999999999997 4577432 333 7777652 22334577777775
Q ss_pred c
Q psy13453 226 R 226 (764)
Q Consensus 226 ~ 226 (764)
.
T Consensus 355 ~ 355 (427)
T 3i16_A 355 G 355 (427)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0018 Score=71.92 Aligned_cols=161 Identities=6% Similarity=-0.110 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCC
Q psy13453 560 CTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQ 639 (764)
Q Consensus 560 ~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~ 639 (764)
..++++.+.+|+.+.-+..- .....++|+|+++++..++.+.... ... . ...+...|+++.-
T Consensus 102 ~~~lr~aia~~~~~~~~~~~-------~~~~iv~t~G~~~al~~~~~~l~~~-~~~----~------~~~~Gd~Vlv~~P 163 (427)
T 2hox_A 102 SFELEKTIKELHEVVGNAAA-------KDRYIVFGVGVTQLIHGLVISLSPN-MTA----T------PDAPESKVVAHAP 163 (427)
T ss_dssp CHHHHHHHHHHHHHHTCBCC-------TTCEEEEESHHHHHHHHHHHHHSCC-TTT----C------TTSCCEEEEECSS
T ss_pred hHHHHHHHHHHHHHhCCcCC-------CCCEEEEeCCHHHHHHHHHHHHhhc-ccc----c------cCCCCCEEEEeCC
Confidence 57788888888877543211 1136799999999987776543100 000 0 0112346888999
Q ss_pred cchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEE
Q psy13453 640 SNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHV 719 (764)
Q Consensus 640 aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHV 719 (764)
.|......++..|.+++. +.+|+++|++++++. +-+|+.+..++.+|.+-+ + +++ +++...
T Consensus 164 ~y~~~~~~~~~~g~~~~~------~~~d~~~l~~~~~~~------~k~v~l~~p~NPtG~~~~-~----~l~--~~~~i~ 224 (427)
T 2hox_A 164 FYPVFREQTKYFDKKGYV------WAGNAANYVNVSNPE------QYIEMVTSPNNPEGLLRH-A----VIK--GCKSIY 224 (427)
T ss_dssp CCHHHHHHHHHSCBTTEE------EEEEGGGGTTCSCGG------GEEEEEESSCTTTCCCCC-C----SST--TCEEEE
T ss_pred CcccHHHHHHHcCCeeee------ecCCHHHHHHhhcCC------ceEEEEcCCCCCcccccH-H----HHc--CCCEEE
Confidence 999999999999988653 457888888777542 346777888999999887 3 333 568888
Q ss_pred eccccccccccchhhhhhcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 720 DAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 720 DaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
|.++-... ..... +. ...+-+..++||.++.| .-+|.+
T Consensus 225 d~~~~~~~---~s~~~-~~--~~~~i~~~S~SK~~g~~G~RiG~~ 263 (427)
T 2hox_A 225 DMVYYWPH---YTPIK-YK--ADEDILLFTMSKFTGHSGSRFGWA 263 (427)
T ss_dssp ECTTCSTT---TSCCC-SC--BCCSEEEEEHHHHTSCGGGCCEEE
T ss_pred eecccCCC---CCccc-cC--CCceEEEEeChhcCCCCCceEEEE
Confidence 87764210 00000 11 23588999999988755 224544
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.015 Score=62.73 Aligned_cols=186 Identities=9% Similarity=0.020 Sum_probs=106.7
Q ss_pred cHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccC----chhhhc-----CCCceeccccccc------cc--------e
Q psy13453 50 AYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQS----LNAPVS-----NGPLKVGGVLRRV------YS--------S 106 (764)
Q Consensus 50 D~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDp----i~~ia~-----~~wlHVDa~l~~~------y~--------s 106 (764)
|+++|+++|+.+ +-+++-+....++|.+-| ++++++ ++++++|.+.... ++ -
T Consensus 171 d~~~l~~~l~~~-----~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d 245 (392)
T 3ruy_A 171 DLEALKAAITPN-----TAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPD 245 (392)
T ss_dssp CHHHHHHHCCTT-----EEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCCCS
T ss_pred cHHHHHHHhccC-----eEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCCCC
Confidence 899999999732 224445558899999988 888775 8999999865211 10 0
Q ss_pred eeeecCCCccccc-ccccc--------c-cCCcccCCCCcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcC-
Q psy13453 107 CLVPRGQKSLRTT-VLFHF--------L-FQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQD- 175 (764)
Q Consensus 107 ~ll~rd~~~l~~~-~s~~~--------d-~~d~tle~SRr~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~- 175 (764)
++.+ .+.+..- +...+ + +.......+-....+..+++...+-.-...+..++..++++++.+.|++.
T Consensus 246 ~~~~--SK~l~gG~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~ 323 (392)
T 3ruy_A 246 MYIL--GKALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQLKEID 323 (392)
T ss_dssp EEEE--CGGGGTTTSCCEEEEECHHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEE--chhhhCChhhhEEEEECHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhc
Confidence 1111 1122221 01110 1 11111111123344444444333322222677788889999999999986
Q ss_pred -CCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHH
Q psy13453 176 -DRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEES 254 (764)
Q Consensus 176 -p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e 254 (764)
+.+.. .++.-+.+.|.+.. + ..++.++|.++|..+... +..++|+++ ...++++
T Consensus 324 ~~~~~~-~~~~g~~~~~~~~~---------------~----~~~l~~~l~~~gi~v~~~----~~~~iRi~~-~~~~~~~ 378 (392)
T 3ruy_A 324 NPMITE-VRGKGLFIGIELNE---------------P----ARPYCEQLKAAGLLCKET----HENVIRIAP-PLVISEE 378 (392)
T ss_dssp CTTEEE-EEEETTEEEEEESS---------------C----SHHHHHHHHTTTEECCCB----TTTEEEECC-CTTCCHH
T ss_pred CCCceE-EEeeeeEEEEEEcc---------------h----HHHHHHHHHHCCcEEecC----CCCEEEEEC-CCCCCHH
Confidence 33433 23445556665321 0 146788888888643221 246899964 3456899
Q ss_pred HHHHHHHHHHHHH
Q psy13453 255 DVQLGWNEIRTAT 267 (764)
Q Consensus 255 ~i~~~l~~l~~~~ 267 (764)
+++.+++.|+++.
T Consensus 379 ~i~~~~~~l~~~l 391 (392)
T 3ruy_A 379 DLEWAFQKIKAVL 391 (392)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998753
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.015 Score=63.40 Aligned_cols=146 Identities=10% Similarity=0.054 Sum_probs=85.2
Q ss_pred eeeHHHH----HhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----C
Q psy13453 21 IYESFKA----THSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----N 91 (764)
Q Consensus 21 ~YSv~KA----a~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~ 91 (764)
|.+..++ +..+|+.. +.||. .|+++|+++|+++ +-+++...++.++|.+.|++++++ +
T Consensus 108 y~~~~~~~~~~~~~~g~~~---~~v~~-----~d~~~l~~~i~~~-----~~~v~~~~~~nptG~~~~l~~i~~~~~~~~ 174 (389)
T 3acz_A 108 YGCTVSLFTHWLPRFGIEV---DLIDT-----SDVEKVKAAWKPN-----TKMVYLESPANPTCKVSDIKGIAVVCHERG 174 (389)
T ss_dssp CHHHHHHHHHHHHHTTCEE---EEECT-----TCHHHHHHTCCTT-----EEEEEEESSCTTTCCCCCHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHcCCEE---EEECC-----CCHHHHHHhcCCC-----CeEEEEECCCCCCCeecCHHHHHHHHHHcC
Confidence 4444554 57788766 77877 3899999988753 224456789999999999999886 8
Q ss_pred CCceecccccccc-------c-eeeeecCCCccccc-------ccccc-cc----CCcccCCCCcccHHHHHHHHHHccH
Q psy13453 92 GPLKVGGVLRRVY-------S-SCLVPRGQKSLRTT-------VLFHF-LF----QHWQIPLGRRFRALKLWMTLRSYGL 151 (764)
Q Consensus 92 ~wlHVDa~l~~~y-------~-s~ll~rd~~~l~~~-------~s~~~-d~----~d~tle~SRr~~ALklWatL~~lG~ 151 (764)
+++++|......+ . -+++..-.|.+... ....- ++ ..+.-..+-....+..|+.++.+
T Consensus 175 ~~livD~~~~~~~~~~~~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l-- 252 (389)
T 3acz_A 175 ARLVVDATFTSPCFLKPLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGM-- 252 (389)
T ss_dssp CEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH--
T ss_pred CEEEEECCCccccccCccccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcCc--
Confidence 9999999642111 0 01111111111100 00000 00 00000001113345567666554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Q psy13453 152 KGLQAYLRKHISLAKKFADLVEQDDRFELV 181 (764)
Q Consensus 152 eGy~~~i~~~i~lA~~l~~~I~~~p~~ell 181 (764)
+.+..++++..+.++.+++.+++++.++-+
T Consensus 253 ~~l~~r~~~~~~~~~~l~~~l~~~~~v~~~ 282 (389)
T 3acz_A 253 KTLPIRMQIHMENGLKVAKFLEQHEKIVKV 282 (389)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCCeeEE
Confidence 446677888889999999999988765544
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.012 Score=62.99 Aligned_cols=183 Identities=8% Similarity=-0.060 Sum_probs=102.8
Q ss_pred ccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccC----chhhhc-----CCCceecccccc-cc-c------------
Q psy13453 49 LAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQS----LNAPVS-----NGPLKVGGVLRR-VY-S------------ 105 (764)
Q Consensus 49 mD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDp----i~~ia~-----~~wlHVDa~l~~-~y-~------------ 105 (764)
.|+++|+++|+++ +-+++.+..+.++|.+.| ++++++ ++++++|..... .+ +
T Consensus 160 ~d~~~l~~~l~~~-----~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 234 (375)
T 2eh6_A 160 NDIDSVYKLLDEE-----TAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKP 234 (375)
T ss_dssp TCHHHHHTTCCTT-----EEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCC
T ss_pred chHHHHHHHhcCC-----eEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCC
Confidence 5899999988642 224445668888999966 777765 899999996531 00 0
Q ss_pred eeeeecCCCcccccccccc-----c----cCCcccCCCCcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy13453 106 SCLVPRGQKSLRTTVLFHF-----L----FQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDD 176 (764)
Q Consensus 106 s~ll~rd~~~l~~~~s~~~-----d----~~d~tle~SRr~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p 176 (764)
.++.+. +.+..-+...+ + +.......+-+...+..++++..+-.- .+..++..++++++.+.|++.+
T Consensus 235 d~~s~S--K~~~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~~ 310 (375)
T 2eh6_A 235 DVIALA--KGLGGGVPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEV--EKLLPHVREVGNYFKEKLKELG 310 (375)
T ss_dssp SEEEEC--GGGGTTSCCEEEEEEHHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEc--ccccCCCCeEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 011111 11111000000 0 111001111233445444443332211 1677788888999999998875
Q ss_pred CeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHH
Q psy13453 177 RFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDV 256 (764)
Q Consensus 177 ~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i 256 (764)
...+ ++.-+.+.|++.. + ..++.++|.++|...... +..++|+++ ...++++++
T Consensus 311 ~~~~--~~~g~~~~~~~~~---------------~----~~~~~~~l~~~gi~~~~~----~~~~iRi~~-~~~~~~~~i 364 (375)
T 2eh6_A 311 KGKV--KGRGLMLGLELER---------------E----CKDYVLKALEKGLLINCT----AGKVLRFLP-PLIIQKEHI 364 (375)
T ss_dssp SSEE--EEETTEEEEECSS---------------C----CHHHHHHHHHTTEECEEE----TTTEEEECC-CTTCCHHHH
T ss_pred cCCc--eEEEEEEEEEEcC---------------c----HHHHHHHHHHCCCEEecC----CCCEEEEEC-CCCCCHHHH
Confidence 4222 2334455554420 1 136777788888744322 356899965 346789999
Q ss_pred HHHHHHHHHH
Q psy13453 257 QLGWNEIRTA 266 (764)
Q Consensus 257 ~~~l~~l~~~ 266 (764)
+.+++.|+++
T Consensus 365 ~~~~~~l~~~ 374 (375)
T 2eh6_A 365 DRAISVLREI 374 (375)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988764
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=96.40 E-value=0.021 Score=62.74 Aligned_cols=64 Identities=6% Similarity=-0.096 Sum_probs=49.3
Q ss_pred HHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----C-CCceec
Q psy13453 24 SFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----N-GPLKVG 97 (764)
Q Consensus 24 v~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~-~wlHVD 97 (764)
+.+.+..+|+.. +.||++ |+++|+++|+++ +-+++...++.++|.+-|++++++ + +++++|
T Consensus 122 ~~~~~~~~G~~v---~~v~~~-----d~~~l~~~i~~~-----t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD 188 (403)
T 3cog_A 122 FRQVASEFGLKI---SFVDCS-----KIKLLEAAITPE-----TKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVD 188 (403)
T ss_dssp HHHTGGGGTCEE---EEECTT-----SHHHHHHHCCTT-----EEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEE
T ss_pred HHHHHHHcCCEE---EEECCC-----CHHHHHHhcCcC-----CeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEE
Confidence 334456778766 888876 899999988743 224456789999999999999886 7 999999
Q ss_pred ccc
Q psy13453 98 GVL 100 (764)
Q Consensus 98 a~l 100 (764)
...
T Consensus 189 ~~~ 191 (403)
T 3cog_A 189 NTF 191 (403)
T ss_dssp CTT
T ss_pred CCC
Confidence 964
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0043 Score=68.07 Aligned_cols=76 Identities=3% Similarity=-0.212 Sum_probs=56.9
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecC--CCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccc---cCchhhhc----
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGL--PDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDI---QSLNAPVS---- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpv--d~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~i---Dpi~~ia~---- 90 (764)
.+.+...+++..|... +.||+ ++++.+|+++|+++|++.. .++-+++-+.++.++|.+ +.+.++++
T Consensus 152 ~~~~~~~~~~~~g~~~---~~v~~~~~~~~~~d~~~l~~~l~~~~--~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~ 226 (420)
T 4f4e_A 152 SWENHRALFDMAGFEV---VAYPYYDAKTNGVNFDGMLAALNGYE--PGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKA 226 (420)
T ss_dssp CCHHHHHHHHHTTCCE---EEEECEETTTTEECHHHHHHHHTTCC--TTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHcCCeE---EEeeeeccccCccCHHHHHHHHHhCC--CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 3566778889999877 99999 3578999999999997431 122233677788999998 55566654
Q ss_pred -CCCceecccc
Q psy13453 91 -NGPLKVGGVL 100 (764)
Q Consensus 91 -~~wlHVDa~l 100 (764)
++++++|.+.
T Consensus 227 ~~~~li~De~y 237 (420)
T 4f4e_A 227 RRLVPFLDIAY 237 (420)
T ss_dssp HTCEEEEEESC
T ss_pred CCcEEEEcccc
Confidence 8899999863
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.018 Score=62.51 Aligned_cols=94 Identities=16% Similarity=0.190 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHhc-CC--CeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEecee
Q psy13453 160 KHISLAKKFADLVEQ-DD--RFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSF 236 (764)
Q Consensus 160 ~~i~lA~~l~~~I~~-~p--~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l 236 (764)
+.-+..+++.+.|++ .+ ++++..+..-..+.+++... ..+ ..++.++|.+.|..+......
T Consensus 310 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~--------------~~~--~~~l~~~l~~~gi~v~~g~~f 373 (417)
T 3g7q_A 310 FYYQRVQQTIAIIRRYLSEERCLIHKPEGAIFLWLWFKDL--------------PIT--TELLYQRLKARGVLMVPGHYF 373 (417)
T ss_dssp HHHHHHHHHHHHHHHHCCTTTCEEECCCBSSEEEEECTTC--------------SSC--HHHHHHHHHHTTEECEEGGGG
T ss_pred HHHHHHHHHHHHHHHhcccCCceeeCCCcceEEEEEcCCC--------------CCC--HHHHHHHHHHCCEEEECchhh
Confidence 344556667777766 45 36665443333333443210 111 246778888889765543322
Q ss_pred C-C--------eeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHc
Q psy13453 237 Q-D--------RLFMRFAICSSQTEESDVQLGWNEIRTATEEVLR 272 (764)
Q Consensus 237 ~-g--------~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~ 272 (764)
. + ..++|+++.. ++++++++++.|.++.+++.+
T Consensus 374 ~~~~~~~~~~~~~~iRis~~~---~~~~i~~~~~~l~~~l~~~~~ 415 (417)
T 3g7q_A 374 FPGLDKPWPHTHQCMRMNYVP---EPDKIEAGVKILAEEIERAWR 415 (417)
T ss_dssp CTTBSSCCGGGGGEEEEESCS---CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccccccCCCeEEEEecC---CHHHHHHHHHHHHHHHHHHHh
Confidence 1 1 4689998864 899999999999998877653
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0042 Score=69.94 Aligned_cols=61 Identities=5% Similarity=-0.087 Sum_probs=47.9
Q ss_pred HHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCceecccc
Q psy13453 27 ATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKVGGVL 100 (764)
Q Consensus 27 Aa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHVDa~l 100 (764)
.+...|... +.||++ |+++|+++|+++ +-+++-+.++.++|.+-|++++++ ++++++|...
T Consensus 191 ~~~~~G~~v---~~v~~~-----d~~~l~~~i~~~-----tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~ 256 (464)
T 1ibj_A 191 VVPRSGVVV---KRVNTT-----KLDEVAAAIGPQ-----TKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSI 256 (464)
T ss_dssp TSGGGTCEE---EEECTT-----SHHHHHHHCCSS-----EEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTT
T ss_pred HHHHcCCEE---EEeCCC-----CHHHHHHHhccC-----ceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCC
Confidence 456778765 888875 899999998642 224457888899999999999886 8899999965
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.01 Score=65.65 Aligned_cols=153 Identities=8% Similarity=-0.065 Sum_probs=90.2
Q ss_pred HHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEee----CCcccccccCchhhhc-------CCCce
Q psy13453 27 ATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYC----GRTLHQDIQSLNAPVS-------NGPLK 95 (764)
Q Consensus 27 Aa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatA----GTT~~G~iDpi~~ia~-------~~wlH 95 (764)
.+...|+.. +.||+++++++|+++|+++|+++ +-+++... ++-++|.+.|++++++ ++++|
T Consensus 128 ~l~~~G~~~---~~v~~~~~g~~d~e~l~~ai~~~-----tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~li 199 (409)
T 3jzl_A 128 SLKDFHIGY---SSVPLLENGDVDFPRIAKKMTPK-----TKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVF 199 (409)
T ss_dssp CTGGGTCEE---EECCCCTTSCCCHHHHHHHCCTT-----EEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEE
T ss_pred HHHHcCCEE---EEeCCCCCCCcCHHHHHHhccCC-----CeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEE
Confidence 445567766 89999999999999999999753 22444444 7889999999999774 68999
Q ss_pred ecccccccc--------c-eeeeecCCCccccc------cc-cccc------c--CCccc--CCCCcccHHHHHHHHHHc
Q psy13453 96 VGGVLRRVY--------S-SCLVPRGQKSLRTT------VL-FHFL------F--QHWQI--PLGRRFRALKLWMTLRSY 149 (764)
Q Consensus 96 VDa~l~~~y--------~-s~ll~rd~~~l~~~------~s-~~~d------~--~d~tl--e~SRr~~ALklWatL~~l 149 (764)
||.+....+ + -++...-.|.+-.. +- ...+ . ....+ .++-... ..|+.++
T Consensus 200 vD~a~~~~~~~~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~g~~~~--~~~~~l~-- 275 (409)
T 3jzl_A 200 VDNCYGEFVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGIGREAGASLY--SLLEMYQ-- 275 (409)
T ss_dssp EECTTCTTTSSCCSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTT--CHHHHHH--
T ss_pred EeCCcccccccCCccccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhccccccccccccHH--HHHHHHH--
Confidence 999743221 0 11111111211100 00 0000 0 00011 1111110 1344433
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCce-----eEEEEe
Q psy13453 150 GLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMG-----LVCFRL 193 (764)
Q Consensus 150 G~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~-----iV~Fry 193 (764)
|.+-...++++..+.|+++++.++++ ++++... ... +++|..
T Consensus 276 gl~~~~~r~~~~~~~a~~la~~L~~~-g~~v~p~-~~~~~~~~i~~i~l 322 (409)
T 3jzl_A 276 GFFLAPHVTAQAIKGARFTAAMLAEF-GVEADPV-WDAPRTDLIQSVSF 322 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEESC-TTSCCSSSCCEEEC
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhC-CCcccCC-CCCCCccEEEEEEe
Confidence 44556788999999999999999997 5677433 233 667754
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=96.12 E-value=0.034 Score=60.03 Aligned_cols=191 Identities=14% Similarity=0.044 Sum_probs=103.2
Q ss_pred cHHHHHHHHHHHhhCCCCcEE-EEeeCCccccc-----ccCchhhhc-----CCCceeccccccc------cc-------
Q psy13453 50 AYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQD-----IQSLNAPVS-----NGPLKVGGVLRRV------YS------- 105 (764)
Q Consensus 50 D~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~-----iDpi~~ia~-----~~wlHVDa~l~~~------y~------- 105 (764)
|+++|+++|++. +-+ +.+ +..++|. .++++++++ ++++++|.+.... +.
T Consensus 172 d~~~l~~~l~~~------~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 244 (406)
T 4adb_A 172 DINSASALIDDS------TCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVT 244 (406)
T ss_dssp CHHHHHTTCSTT------EEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCC
T ss_pred cHHHHHHHhcCC------eEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCC
Confidence 799999988632 334 444 7777774 456777665 8999999865211 10
Q ss_pred -eeeeecCCCcccccccccc--------c-cCCcccCCCCcccHHHHHHH---HHHccHHHHHHHHHHHHHHHHHHHHHH
Q psy13453 106 -SCLVPRGQKSLRTTVLFHF--------L-FQHWQIPLGRRFRALKLWMT---LRSYGLKGLQAYLRKHISLAKKFADLV 172 (764)
Q Consensus 106 -s~ll~rd~~~l~~~~s~~~--------d-~~d~tle~SRr~~ALklWat---L~~lG~eGy~~~i~~~i~lA~~l~~~I 172 (764)
-++.+ .+.+..-+...+ + +.......+-....+..+++ |+.+.. .++.++..++++++.+.+
T Consensus 245 ~d~~t~--sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l 319 (406)
T 4adb_A 245 PDLLTT--AKALGGGFPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINT---PEMLNGVKQRHDWFVERL 319 (406)
T ss_dssp CSEEEE--CGGGGTTSCCEEEEECHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHH
T ss_pred CCEEEe--chhhcCCCCeEEEEEcHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHH
Confidence 01111 111111000100 0 11111111123344444444 444433 466667777788888888
Q ss_pred hcCCC-eEEeC--CCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCC
Q psy13453 173 EQDDR-FELVC--PPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSS 249 (764)
Q Consensus 173 ~~~p~-~ell~--~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np 249 (764)
++... +.++. ...-.++.|.... .......++.++|.++|..+.. .+..++|++ .+.
T Consensus 320 ~~~~~~~~~~~~~~~~g~~~~~~~~~---------------~~~~~~~~~~~~l~~~gi~v~~----~~~~~iRi~-~~~ 379 (406)
T 4adb_A 320 NTINHRYGLFSEVRGLGLLIGCVLNA---------------DYAGQAKQISQEAAKAGVMVLI----AGGNVVRFA-PAL 379 (406)
T ss_dssp HHHHHHHCCEEEEEEETTEEEEEECT---------------TTTTCHHHHHHHHHHTTEECEE----SSTTEEEEC-CCT
T ss_pred HHHHHhCCCceEEEEEEEEEEEEEeC---------------CcHHHHHHHHHHHHHCCcEEee----cCCCeEEEE-CCC
Confidence 76421 11111 1122344554421 0000135788888889875433 235689995 455
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHc
Q psy13453 250 QTEESDVQLGWNEIRTATEEVLR 272 (764)
Q Consensus 250 ~Tt~e~i~~~l~~l~~~~~~i~~ 272 (764)
.+++++++.+++.|+++.+++.+
T Consensus 380 ~~~~e~i~~~~~~l~~~l~~~~~ 402 (406)
T 4adb_A 380 NVSEEEVTTGLDRFAAACEHFVS 402 (406)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHh
Confidence 67899999999999999887654
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.047 Score=59.74 Aligned_cols=216 Identities=7% Similarity=0.000 Sum_probs=119.9
Q ss_pred eeeeHHHHHhhcCCCC---------CCeEEecCCCC--CcccHHHHHHHHHHHhhCCCCcEEEEeeCCccccccc---Cc
Q psy13453 20 LIYESFKATHSLSGTP---------DQVRLSGLPDS--EWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQ---SL 85 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~---------~~v~~Vpvd~~--~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iD---pi 85 (764)
.|.++..++..+|... ..++.+|+++. +..|+++ ..++-+++-+.+..++|.+= .+
T Consensus 151 ~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~v~l~~p~NPtG~~~~~~~l 220 (432)
T 3ei9_A 151 SYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST----------VGRTDIIFFCSPNNPTGAAATREQL 220 (432)
T ss_dssp CCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG----------CCCCSEEEEESSCTTTCCCCCHHHH
T ss_pred CCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCChhh----------CCCCCEEEEeCCCCCCCCCCCHHHH
Confidence 5677788888888532 24689999853 3455332 11233554457889999874 45
Q ss_pred hhhhc-----CCCceeccccccc-cc----eeeeecC-CC--cccccccc---------ccccCCccc------------
Q psy13453 86 NAPVS-----NGPLKVGGVLRRV-YS----SCLVPRG-QK--SLRTTVLF---------HFLFQHWQI------------ 131 (764)
Q Consensus 86 ~~ia~-----~~wlHVDa~l~~~-y~----s~ll~rd-~~--~l~~~~s~---------~~d~~d~tl------------ 131 (764)
.++++ ++++.+|.+.... ++ ++.-... .. ..-.+|+= .+-+..-.+
T Consensus 221 ~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~ 300 (432)
T 3ei9_A 221 TQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDF 300 (432)
T ss_dssp HHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTTTCCEEEECCTTCBCTTSCBHHHHH
T ss_pred HHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcccceEEEEEChHHhhcchHHHHHHH
Confidence 55543 8899999864311 10 0000000 00 00000000 000000000
Q ss_pred -----CCCCcccHHHHHHHHHHcc---HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccc
Q psy13453 132 -----PLGRRFRALKLWMTLRSYG---LKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDN 203 (764)
Q Consensus 132 -----e~SRr~~ALklWatL~~lG---~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~ 203 (764)
...-....+...+++..+- .+.+.++.++..+..+++.+.|++. ++++..+.....+.+.+.
T Consensus 301 ~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~--------- 370 (432)
T 3ei9_A 301 NRIICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL-GYDVYGGKNAPYVWVHFP--------- 370 (432)
T ss_dssp HHHHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEECSSSSEEEEECT---------
T ss_pred HHHhccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHC-CceecCCCcceEEEEECC---------
Confidence 0001233455555555554 3456778888889999999999987 888776555555555432
Q ss_pred cccCccCCccHHHHHHHHHHHhc-CcEEEEecee--CCeeEEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13453 204 LFGTISFGDNDLNKAVYDRIIAR-KVIYIVKGSF--QDRLFMRFAICSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 204 ~~~~~~~~~d~~n~~L~~~L~~~-G~~~vs~t~l--~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~ 267 (764)
+.+ ..++.++|.++ |.++...... .+..++|+++.+ +++++++.++.|++..
T Consensus 371 -------~~~--~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~~---~~e~l~~~l~rl~~~~ 425 (432)
T 3ei9_A 371 -------NQS--SWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFG---HRENILEACRRFKQLY 425 (432)
T ss_dssp -------TSC--HHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS---CHHHHHHHHHHHHHHH
T ss_pred -------CCC--HHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEecC---CHHHHHHHHHHHHHHh
Confidence 111 23566666654 7654443322 245789998743 7899999999887754
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.14 Score=55.84 Aligned_cols=203 Identities=10% Similarity=-0.030 Sum_probs=107.6
Q ss_pred CeEEecCCCCCc----------------ccHHHHH-HHHHHHhhCCCCcEE-EEeeCCcccccc-cC---chhhhc----
Q psy13453 37 QVRLSGLPDSEW----------------LAYLTLR-TIYESFRKSFLCPMC-SGYCGRTLHQDI-QS---LNAPVS---- 90 (764)
Q Consensus 37 ~v~~Vpvd~~~r----------------mD~~aLe-~~I~~~~~~G~~p~~-VatAGTT~~G~i-Dp---i~~ia~---- 90 (764)
.++.||.+++++ +|+++|+ ++|++... ...+.+ +.+--..++|.+ .+ ++++++
T Consensus 166 ~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~-~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~ 244 (419)
T 2eo5_A 166 GVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVP-PEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKK 244 (419)
T ss_dssp TEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCC-GGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHH
T ss_pred CCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccC-CCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHH
Confidence 578999987654 4799999 99985210 012334 343323457964 43 555554
Q ss_pred -CCCceeccccccc-c-c---e---------eeeecCCCccccc-ccccc-----ccCCcc-cC-CCCcccHHHHHHHHH
Q psy13453 91 -NGPLKVGGVLRRV-Y-S---S---------CLVPRGQKSLRTT-VLFHF-----LFQHWQ-IP-LGRRFRALKLWMTLR 147 (764)
Q Consensus 91 -~~wlHVDa~l~~~-y-~---s---------~ll~rd~~~l~~~-~s~~~-----d~~d~t-le-~SRr~~ALklWatL~ 147 (764)
++++++|...... + + + ++.+. +.+..- +...+ +...+. .. .+=....+...+++.
T Consensus 245 ~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~t~s--K~~~~G~~riG~~~~~~~~~~~~~~~~~t~~~n~~~~~aa~a 322 (419)
T 2eo5_A 245 YGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITLA--KALGGGIMPIGATIFRKDLDFKPGMHSNTFGGNALACAIGSK 322 (419)
T ss_dssp HTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTTSCCEEEEEEGGGCCC------CCCCCHHHHHHHHH
T ss_pred cCCEEEEeccccCCccCcchhhHHhcCCCCCEEEec--ccccCCccceEEEEEchHhhcCCcccCCCCCCCHHHHHHHHH
Confidence 8899999964210 0 0 0 11010 111100 00000 111110 00 011224444444433
Q ss_pred HccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcC
Q psy13453 148 SYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARK 227 (764)
Q Consensus 148 ~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G 227 (764)
.+-. +.++.++.-++.++|.+.|++. +..+ ++.-+.+.|.+.|. ..... +.++|.+.|
T Consensus 323 al~~--~~~~~~~~~~~~~~l~~~L~~~--~~~~-~~~g~~~~i~~~~~----------------~~~~~-~~~~l~~~G 380 (419)
T 2eo5_A 323 VIDI--VKDLLPHVNEIGKIFAEELQGL--ADDV-RGIGLAWGLEYNEK----------------KVRDR-IIGESFKRG 380 (419)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHTTS--SSEE-EEETTEEEEECSCH----------------HHHHH-HHHHHHHTT
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHh--hhhe-EeeeEEEEEEEecC----------------ccHHH-HHHHHHHCC
Confidence 3311 2236677778889999999875 2111 23344555554210 01234 888888889
Q ss_pred cEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 228 VIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 228 ~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
.++.... ..++|+++ +..+++++++.+++.|+++.++
T Consensus 381 v~v~~~~----~~~lRis~-~~~~t~e~i~~~l~~l~~~l~~ 417 (419)
T 2eo5_A 381 LLLLPAG----RSAIRVIP-PLVISEEEAKQGLDILKKVIKV 417 (419)
T ss_dssp EECEEET----TTEEEECC-CTTCCHHHHHHHHHHHHHHHHH
T ss_pred CEEecCC----CCEEEEEC-CCCCCHHHHHHHHHHHHHHHHh
Confidence 7554432 45799943 5567899999999999887654
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.014 Score=61.51 Aligned_cols=68 Identities=4% Similarity=-0.088 Sum_probs=48.3
Q ss_pred eeeeHHHHH----hhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----
Q psy13453 20 LIYESFKAT----HSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS----- 90 (764)
Q Consensus 20 ~~YSv~KAa----~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~----- 90 (764)
.|.+...++ ...|... +.+|+ +|+++|+++|+++ +-+++.+.++.++|.+-|++++++
T Consensus 46 ~~~~~~~~~~~~~~~~g~~~---~~~~~-----~d~~~l~~~i~~~-----~~~v~~~~~~nptG~~~~~~~i~~~~~~~ 112 (331)
T 1pff_A 46 LYGCTHALFEHQLRKFGVEV---DFIDM-----AVPGNIEKHLKPN-----TRIVYFETPANPTLKVIDIEDAVKQARKQ 112 (331)
T ss_dssp CCHHHHHHHHTHHHHTTCEE---EEECT-----TSTTHHHHTCCTT-----EEEEEEESSCTTTCCCCCHHHHHHHHTTS
T ss_pred CcchHHHHHHHHHHhcCCEE---EEeCC-----CCHHHHHHhhcCC-----CeEEEEECCCCCcCcccCHHHHHHHHhhh
Confidence 344555554 4467655 77776 4888999988642 224456788999999999998764
Q ss_pred -CCCceecccc
Q psy13453 91 -NGPLKVGGVL 100 (764)
Q Consensus 91 -~~wlHVDa~l 100 (764)
++++++|++.
T Consensus 113 ~~~~li~D~a~ 123 (331)
T 1pff_A 113 KDILVIVDNTF 123 (331)
T ss_dssp SSCEEEEECTT
T ss_pred cCCEEEEECCC
Confidence 5788999954
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.074 Score=58.49 Aligned_cols=216 Identities=9% Similarity=-0.026 Sum_probs=123.0
Q ss_pred eeeeHHHHHhhcCCC-------CCCeEEecCCCC--CcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccC---chh
Q psy13453 20 LIYESFKATHSLSGT-------PDQVRLSGLPDS--EWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQS---LNA 87 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~-------~~~v~~Vpvd~~--~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDp---i~~ 87 (764)
.|.++..++...|.. ..+++.+|++++ +..|++++ .++-+++-+.+..++|.+=+ +++
T Consensus 164 ~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~v~l~~p~NPtG~~~~~~~l~~ 233 (449)
T 3qgu_A 164 SYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA----------KRTDIIFFCSPNNPTGAAATRAQLTE 233 (449)
T ss_dssp CCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC----------CCCSEEEEESSCTTTCCCCCHHHHHH
T ss_pred CChhHHHHHHHcCCcccccccccceeEEEecccccCCcCChhHc----------CCCCEEEEeCCCCCCCCcCCHHHHHH
Confidence 567788889999976 012499999854 45554322 12235544478899999844 555
Q ss_pred hhc-----CCCceeccccccc-cc-----e-----------eeeecCCCccc-ccccccc-----ccCCc-------cc-
Q psy13453 88 PVS-----NGPLKVGGVLRRV-YS-----S-----------CLVPRGQKSLR-TTVLFHF-----LFQHW-------QI- 131 (764)
Q Consensus 88 ia~-----~~wlHVDa~l~~~-y~-----s-----------~ll~rd~~~l~-~~~s~~~-----d~~d~-------tl- 131 (764)
+++ ++++.+|.+.... +. + +++..-.+.+- .-+...+ +..+. .+
T Consensus 234 l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~ 313 (449)
T 3qgu_A 234 LVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVVPKALKYANGEPVHADWN 313 (449)
T ss_dssp HHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTCCCEEEECCTTCBCTTSCBHHHHHH
T ss_pred HHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCccceeEEEecCHHHHhhhhhhHHHHHH
Confidence 544 8899999864211 00 1 01111111110 0000000 01110 00
Q ss_pred ----CCCCcccHHHHHHHHHHcc---HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeecccccccccc
Q psy13453 132 ----PLGRRFRALKLWMTLRSYG---LKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNL 204 (764)
Q Consensus 132 ----e~SRr~~ALklWatL~~lG---~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~ 204 (764)
...-....+..+++...+- .+.+.++.++..+..+++.+.|++. ++++..+.....+.+.+. +
T Consensus 314 ~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~--~------- 383 (449)
T 3qgu_A 314 RVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEM-GFSVYGGDDAPYIWVGFP--G------- 383 (449)
T ss_dssp HHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEESSSSSEEEEECT--T-------
T ss_pred HHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeeeCCCCeeEEEEECC--C-------
Confidence 0001234455566655554 3557788888899999999999987 788765444444544431 1
Q ss_pred ccCccCCccHHHHHHHHHHHhc-CcEEEEecee--CCeeEEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13453 205 FGTISFGDNDLNKAVYDRIIAR-KVIYIVKGSF--QDRLFMRFAICSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 205 ~~~~~~~~d~~n~~L~~~L~~~-G~~~vs~t~l--~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~ 267 (764)
.+ ..++.++|.++ |.++...... .+..++|+++.. ++++++.+++.|+++.
T Consensus 384 -------~~--~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~---~~e~i~~~l~~l~~~~ 437 (449)
T 3qgu_A 384 -------KP--SWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFG---SRENILEAVRRFKEAY 437 (449)
T ss_dssp -------SC--HHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS---CHHHHHHHHHHHHHHH
T ss_pred -------CC--HHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecC---CHHHHHHHHHHHHHHH
Confidence 01 24677777775 8754433322 345789998654 7899999999998765
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.028 Score=61.75 Aligned_cols=107 Identities=18% Similarity=0.137 Sum_probs=66.3
Q ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcC----CCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHH
Q psy13453 141 KLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQD----DRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLN 216 (764)
Q Consensus 141 klWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~----p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n 216 (764)
...++|+.+..+ ++.++..++++++.+.|++. |.+..+ ++.-+++.|.+.... .. ..
T Consensus 309 a~~a~L~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~v~~~~~~-------------~~--~~ 369 (420)
T 2pb2_A 309 VAGAAFDIINTP---EVLQGIHTKRQQFVQHLQAIDEQFDIFSDI-RGMGLLIGAELKPKY-------------KG--RA 369 (420)
T ss_dssp HHHHHHHHHSSH---HHHHHHHHHHHHHHHHHHHHHHHHCCEEEE-EEETTEEEEEECGGG-------------TT--CH
T ss_pred HHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-EecceEEEEEECCCc-------------hH--HH
Confidence 345556665544 45666677788888888764 333222 234455666553100 00 12
Q ss_pred HHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy13453 217 KAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVL 271 (764)
Q Consensus 217 ~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~ 271 (764)
.++.++|.+.|..+... +..++|+++ ...+++++++.+++.|+++.+++.
T Consensus 370 ~~l~~~l~~~Gi~v~~~----~~~~iRl~~-~~~~t~eei~~~~~~l~~~l~~~~ 419 (420)
T 2pb2_A 370 RDFLYAGAEAGVMVLNA----GADVMRFAP-SLVVEEADIHEGMQRFAQAVGKVV 419 (420)
T ss_dssp HHHHHHHHHTTEECEES----STTEEEECC-CTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEeC----CCCEEEEEC-CCCCCHHHHHHHHHHHHHHHHHHh
Confidence 46888888888654332 246899964 346789999999999999876653
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0066 Score=65.49 Aligned_cols=211 Identities=9% Similarity=-0.017 Sum_probs=119.5
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCC--CCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccCch---hhhc---
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLP--DSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQSLN---APVS--- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd--~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDpi~---~ia~--- 90 (764)
.+.++..++...|... +.+|++ +++.+|+++|+++|++. ...+.+ +-+.++.++|.+=|.+ ++++
T Consensus 126 ~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~ 199 (394)
T 2ay1_A 126 TWPNHVSIMNFMGLPV---QTYRYFDAETRGVDFEGMKADLAAA---KKGDMVLLHGCCHNPTGANLTLDQWAEIASILE 199 (394)
T ss_dssp CCHHHHHHHHHHTCCE---EEEECEETTTTEECHHHHHHHHHTC---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHH
T ss_pred CChhHHHHHHHcCCce---EEEecccccCCccCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 4567788889999876 899996 67899999999999753 112344 5677888999885544 4443
Q ss_pred --CCCceeccccccc-cc----------------eee-eecCCCccc-cccccccccC---Cc--------cc-----CC
Q psy13453 91 --NGPLKVGGVLRRV-YS----------------SCL-VPRGQKSLR-TTVLFHFLFQ---HW--------QI-----PL 133 (764)
Q Consensus 91 --~~wlHVDa~l~~~-y~----------------s~l-l~rd~~~l~-~~~s~~~d~~---d~--------tl-----e~ 133 (764)
++++++|...... ++ ..+ +..-.+.+- .-+...+-+. +. .+ ..
T Consensus 200 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~ 279 (394)
T 2ay1_A 200 KTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQT 279 (394)
T ss_dssp HHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred HCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhh
Confidence 8899999864211 10 011 111111111 0000000000 00 00 00
Q ss_pred CCcccHHHHHHHHHHc--c------HHHHHHHHHHHHHHHHHHHHHHhcCC---CeEEeCCCCceeEEEEeecccccccc
Q psy13453 134 GRRFRALKLWMTLRSY--G------LKGLQAYLRKHISLAKKFADLVEQDD---RFELVCPPSMGLVCFRLKVRFWDKLD 202 (764)
Q Consensus 134 SRr~~ALklWatL~~l--G------~eGy~~~i~~~i~lA~~l~~~I~~~p---~~ell~~P~l~iV~Fry~P~~~~~~~ 202 (764)
.-....+..+++...+ + .+.+.++.++..+..+++.+.+++.. ++++. .|..+...|-
T Consensus 280 ~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~g~~~~~---------- 348 (394)
T 2ay1_A 280 YSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFV-AEHRGMFSRL---------- 348 (394)
T ss_dssp TSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHH-HHCCSSEEEC----------
T ss_pred cCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEE-cCCceEEEee----------
Confidence 0011334444444333 2 24667777777888888988888753 35543 2333444441
Q ss_pred ccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13453 203 NLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 203 ~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~ 267 (764)
+.+ ...+.+.+.+.|..+.. .+|+++. .+++++++.+++.|++++
T Consensus 349 --------~~~--~~~~~~~l~~~gi~v~~--------~~Ris~~--~~~~~~i~~~~~~l~~~~ 393 (394)
T 2ay1_A 349 --------GAT--PEQVKRIKEEFGIYMVG--------DSRINIA--GLNDNTIPILARAIIEVG 393 (394)
T ss_dssp --------CCC--HHHHHHHHHHHCEECCT--------TCEEEGG--GCCTTTHHHHHHHHHHHT
T ss_pred --------CCC--HHHHHHHHHhCCEEecC--------CCeEEee--cCCHhhHHHHHHHHHHcc
Confidence 111 13466666677864321 2699876 467899999999998763
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.018 Score=62.37 Aligned_cols=219 Identities=10% Similarity=-0.019 Sum_probs=109.2
Q ss_pred eeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcE-EEEeeCCcccc-cccCchhhhc-----CCC
Q psy13453 21 IYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPM-CSGYCGRTLHQ-DIQSLNAPVS-----NGP 93 (764)
Q Consensus 21 ~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~-~VatAGTT~~G-~iDpi~~ia~-----~~w 93 (764)
||++.+++...|... +.| +|+++|+++ ++ ++-+ ++-..++-++| ...+++++++ +++
T Consensus 111 ~~~~~~~~~~~g~~~---~~v-------~d~~~l~~~-~~-----~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~ 174 (374)
T 2aeu_A 111 HPSIERSCKIVNAKY---FES-------DKVGEILNK-ID-----KDTLVIITGSTMDLKVIELENFKKVINTAKNKEAI 174 (374)
T ss_dssp CTHHHHHHHHTTCEE---EEE-------SCHHHHHTT-CC-----TTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHHcCcEE---EEe-------CCHHHHHhc-CC-----CccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCE
Confidence 567666788888765 555 388998887 32 2335 43456777888 8888988876 899
Q ss_pred ceecccccccc------------c-eeeeecCCCcccccccccc-----cc----CCcccCCCCcccHHHH---HHHHHH
Q psy13453 94 LKVGGVLRRVY------------S-SCLVPRGQKSLRTTVLFHF-----LF----QHWQIPLGRRFRALKL---WMTLRS 148 (764)
Q Consensus 94 lHVDa~l~~~y------------~-s~ll~rd~~~l~~~~s~~~-----d~----~d~tle~SRr~~ALkl---WatL~~ 148 (764)
+++|......+ . .+++..-.+.+.. ....+ +. ..+....+-....+.. -.++..
T Consensus 175 li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g-~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~ 253 (374)
T 2aeu_A 175 VFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEG-PRGGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKN 253 (374)
T ss_dssp EEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSS-CSCEEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHH
T ss_pred EEEECCcccccccccccCCccccCCcEEEecCcccccC-cceEEEEECHHHHHHHHHhhccccCCCCHHHHHHHHHHHHH
Confidence 99999532111 0 1111111121111 00000 00 0000001112222333 333444
Q ss_pred ccHHHHHHHHHHHHHH----HHHHHHHHhcC---CCeEEeCCCCceeEEEEeeccccccccccccCccCCccH-HHHHHH
Q psy13453 149 YGLKGLQAYLRKHISL----AKKFADLVEQD---DRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDND-LNKAVY 220 (764)
Q Consensus 149 lG~eGy~~~i~~~i~l----A~~l~~~I~~~---p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~-~n~~L~ 220 (764)
+..+.+++..++...+ .+++.+.+... +++.+...|.-. +.++...+. ..+. -..++.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~-~~~~~~~~~-------------~~~~~~~~~~~ 319 (374)
T 2aeu_A 254 FNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGF-VIKRVYKDD-------------TINIKKLIEIG 319 (374)
T ss_dssp CCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEE-EEEEEESSH-------------HHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCceE-EEEeecccc-------------cccccchHHHH
Confidence 4333344444444444 34555555544 456665555432 222211000 0000 012243
Q ss_pred -HHHHhcCcEEEEecee-CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 221 -DRIIARKVIYIVKGSF-QDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 221 -~~L~~~G~~~vs~t~l-~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
+.+.+.|.++...... .+..++|++++.+...+.+++.+.+.+++..+++
T Consensus 320 ~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~~ 371 (374)
T 2aeu_A 320 FNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKMA 371 (374)
T ss_dssp HHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 4444568754332222 2345799999877776667889888888877665
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.063 Score=61.22 Aligned_cols=73 Identities=5% Similarity=-0.164 Sum_probs=54.1
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCC----CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCch---hhhc--
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLP----DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLN---APVS-- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd----~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~---~ia~-- 90 (764)
.|.++..++...|.+. +.+|++ +++.+|+++|+++++.. +-+++-+.++.++|.+=|.+ ++++
T Consensus 202 ~~~~~~~~~~~~g~~~---~~v~~~~~~~~~~~~d~~~l~~~l~~~-----~k~v~l~~p~NPtG~~~~~~~l~~l~~la 273 (533)
T 3f6t_A 202 IFTPYLRIPELKDYEL---VEVDLHSYEKNDWEIEPNEIEKLKDPS-----IKALIVVNPTNPTSKEFDTNALNAIKQAV 273 (533)
T ss_dssp CCHHHHTSGGGGGSEE---EEECCCEETTTTSEECHHHHHHHSCTT-----EEEEEEESSCTTTCBCCCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHcCCeE---EEEEecCCcccCCCCCHHHHHHHhCCC-----CeEEEEeCCCCCCccccCHHHHHHHHHHH
Confidence 5677788888888876 899985 46899999999988642 22444557888999986555 4443
Q ss_pred ----CCCceecccc
Q psy13453 91 ----NGPLKVGGVL 100 (764)
Q Consensus 91 ----~~wlHVDa~l 100 (764)
++++++|.+.
T Consensus 274 ~~~~~~~li~De~y 287 (533)
T 3f6t_A 274 EKNPKLMIISDEVY 287 (533)
T ss_dssp HHCTTCEEEEECTT
T ss_pred HhCCCCEEEEcCCc
Confidence 6888999853
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.13 Score=56.30 Aligned_cols=216 Identities=7% Similarity=-0.143 Sum_probs=110.0
Q ss_pred EEecCCCCCcc-----cHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccC----chhhhc-----CCCceeccccccc
Q psy13453 39 RLSGLPDSEWL-----AYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQS----LNAPVS-----NGPLKVGGVLRRV 103 (764)
Q Consensus 39 ~~Vpvd~~~rm-----D~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDp----i~~ia~-----~~wlHVDa~l~~~ 103 (764)
+.+|.+..+.- |+++|+++|++. ....+.+ +......+.|.+-| ++++++ ++++++|......
T Consensus 170 ~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~ 247 (439)
T 3dxv_A 170 YPDPYRPYRNDPTGDAILTLLTEKLAAV--PAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGL 247 (439)
T ss_dssp CCCSSSCBTTBTTSHHHHHHHHHHHHTS--CTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCT
T ss_pred EEcCCCcccccccHHHHHHHHHHHHHhc--CCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 44565543333 899999999521 1122334 45555566788877 777765 8899999754311
Q ss_pred -c-c---eee---eecCCCcccccccc----c--------cc-cCCcccCCCCcccHHHHHHHHHHccHHHHHHHHHHHH
Q psy13453 104 -Y-S---SCL---VPRGQKSLRTTVLF----H--------FL-FQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHI 162 (764)
Q Consensus 104 -y-~---s~l---l~rd~~~l~~~~s~----~--------~d-~~d~tle~SRr~~ALklWatL~~lG~eGy~~~i~~~i 162 (764)
+ + .+- +..+--++...+.. . .+ +.......+- ...+.+.+++..+-.-.-.+++++..
T Consensus 248 g~~g~~~~~~~~~~~~di~s~sK~~~~G~riG~~~~~~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~~~~~~~~~ 326 (439)
T 3dxv_A 248 ARSGRLHCFEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCASAFAMQTLH-GNPISAAAGLAVLETIDRDDLPAMAE 326 (439)
T ss_dssp TTTSSSSGGGGTTCCCSEEEECGGGGTTSCCEEEEEEHHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred CcCchhhHHHhcCCCCCEEEEcchhcCCcceEEEEECHHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 0 0 000 00000011111110 0 01 1111111222 44555555444332111134555566
Q ss_pred HHHHHHHHHHhc----CCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCC
Q psy13453 163 SLAKKFADLVEQ----DDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQD 238 (764)
Q Consensus 163 ~lA~~l~~~I~~----~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g 238 (764)
++.+++.+.+++ .+.+..+ ++.-+.+.|.+...... .........++.++|.++|.++.... .+
T Consensus 327 ~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~ 394 (439)
T 3dxv_A 327 RKGRLLRDGLSELAKRHPLIGDI-RGRGLACGMELVCDRQS---------REPARAETAKLIYRAYQLGLVVYYVG--MN 394 (439)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEEEEETTT---------TEECHHHHHHHHHHHHHHTEECEEES--TT
T ss_pred HHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEEEEEecCccc---------cCCCHHHHHHHHHHHHHCCcEEeecC--CC
Confidence 666666666654 4544332 23344555655321100 00112234678888888897554432 23
Q ss_pred eeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 239 RLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 239 ~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
..++|+++ +..+++++++.+++.|+++.+++
T Consensus 395 ~~~iRi~~-~~~~t~e~i~~~l~~l~~~l~~~ 425 (439)
T 3dxv_A 395 GNVLEFTP-PLTITETDIHKALDLLDRAFSEL 425 (439)
T ss_dssp SCEEEECC-CTTCCHHHHHHHHHHHHHHHHTG
T ss_pred CCEEEEEC-CCCCCHHHHHHHHHHHHHHHHHH
Confidence 46899854 44567999999999999887654
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=95.68 E-value=0.019 Score=62.38 Aligned_cols=213 Identities=8% Similarity=-0.021 Sum_probs=122.8
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecC-C-CCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccC---chhhhc---
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGL-P-DSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQS---LNAPVS--- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpv-d-~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDp---i~~ia~--- 90 (764)
.+.++..+++.+|... +.+|+ + +++.+|+++|+++|++.. ...++ +-+.++.++|.+=+ +.++++
T Consensus 133 ~~~~~~~~~~~~g~~~---~~v~~~~~~~~~~d~~~l~~~l~~~~---~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~ 206 (412)
T 1yaa_A 133 TWANHMAIFENQGLKT---ATYPYWANETKSLDLNGFLNAIQKAP---EGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIA 206 (412)
T ss_dssp CCTTHHHHHHTTTCCE---EEEECEETTTTEECHHHHHHHHHHSC---TTCEEEEECSSCTTTCCCCCHHHHHHHHHHHH
T ss_pred CCccHHHHHHHcCceE---EEEeeecCCCCccCHHHHHHHHHhCC---CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 4567888899999876 89998 5 378999999999997631 12355 45889999999854 444543
Q ss_pred --CCCceeccccccc-cc-------ee-------------e-eecCCCcccc-cccccccc--C-----Ccc--------
Q psy13453 91 --NGPLKVGGVLRRV-YS-------SC-------------L-VPRGQKSLRT-TVLFHFLF--Q-----HWQ-------- 130 (764)
Q Consensus 91 --~~wlHVDa~l~~~-y~-------s~-------------l-l~rd~~~l~~-~~s~~~d~--~-----d~t-------- 130 (764)
++++++|...... ++ ++ + +..-.+.+-. -+...+-+ . +..
T Consensus 207 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~ 286 (412)
T 1yaa_A 207 SKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQ 286 (412)
T ss_dssp HTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHH
T ss_pred HCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHH
Confidence 7899999864211 11 10 0 0000111100 00000111 1 100
Q ss_pred ----cCC-CCcccHHHHHHHHHHc--c------HHHHHHHHHHHHHHHHHHHHHHhcCC---CeEEeCCCCceeEEEEee
Q psy13453 131 ----IPL-GRRFRALKLWMTLRSY--G------LKGLQAYLRKHISLAKKFADLVEQDD---RFELVCPPSMGLVCFRLK 194 (764)
Q Consensus 131 ----le~-SRr~~ALklWatL~~l--G------~eGy~~~i~~~i~lA~~l~~~I~~~p---~~ell~~P~l~iV~Fry~ 194 (764)
... .-....+..+++...+ + .+.+.++.++..+..+++.+.|++.. ++++. .|+.+.++|.
T Consensus 287 l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~-- 363 (412)
T 1yaa_A 287 LAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHI-VNQCGMFSFT-- 363 (412)
T ss_dssp HHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHH-HHCCSSEEEC--
T ss_pred HHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeee-ccCceEEEee--
Confidence 000 0112334444444333 2 24677777888888999999998864 36643 3555555552
Q ss_pred ccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 195 VRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 195 P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
+.+ ...+...+.+.|..+.. .+|+++.. .++++++.+++.|+++.+.
T Consensus 364 ----------------~~~--~~~~~~~l~~~gi~v~~--------~~Ris~~~--~~~~~i~~~~~~l~~~~~~ 410 (412)
T 1yaa_A 364 ----------------GLT--PQMVKRLEETHAVYLVA--------SGRASIAG--LNQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp ----------------CCC--HHHHHHHHHHHCEECCT--------TSEEEGGG--CCTTTHHHHHHHHHHHHHH
T ss_pred ----------------CCC--HHHHHHHHHhCCEEecc--------CcEEEEcc--CCHhHHHHHHHHHHHHHHh
Confidence 111 13454455567764321 47998874 4788999999999887653
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.025 Score=61.81 Aligned_cols=131 Identities=13% Similarity=0.135 Sum_probs=77.7
Q ss_pred HHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc---------CCCceec
Q psy13453 27 ATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS---------NGPLKVG 97 (764)
Q Consensus 27 Aa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~---------~~wlHVD 97 (764)
++..+|... +.||++ | ++|+++|+++ +-+++-..++.++|.+-|++++++ ++++|+|
T Consensus 113 ~~~~~G~~v---~~v~~~-----d-~~l~~~i~~~-----t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD 178 (393)
T 1n8p_A 113 VANAHGVET---SFTNDL-----L-NDLPQLIKEN-----TKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVD 178 (393)
T ss_dssp TSTTTCSCC---EEESSH-----H-HHHHHHSCSS-----EEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEE
T ss_pred HHHHcCcEE---EEeCCC-----h-HHHHHhcccC-----ceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEe
Confidence 556677776 888886 7 8888888642 224446778889999999999874 5789999
Q ss_pred cccccc-------cc--------------------eeeeecCCCccccccccccccCCcccCCCCcccHHHHHHHHHHcc
Q psy13453 98 GVLRRV-------YS--------------------SCLVPRGQKSLRTTVLFHFLFQHWQIPLGRRFRALKLWMTLRSYG 150 (764)
Q Consensus 98 a~l~~~-------y~--------------------s~ll~rd~~~l~~~~s~~~d~~d~tle~SRr~~ALklWatL~~lG 150 (764)
+..... ++ ++++.++++.... +....-..+-+...+..|+.++.+
T Consensus 179 ~a~~~~~~~~~~~~~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~-------l~~~~~~~g~~~~~~~~~~~~~~l- 250 (393)
T 1n8p_A 179 NTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYER-------LQFLQNAIGAIPSPFDAWLTHRGL- 250 (393)
T ss_dssp CTTTHHHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHH-------HHHHHHHHCCCCCHHHHHHHHHHH-
T ss_pred CCccccccCCHHHcCCeEEEEECcccccCCCCceeEEEEeCCHHHHHH-------HHHHHHhcCCCCCHHHHHHHHhcc-
Confidence 953211 00 1222111110000 000000011122345556544433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC-eEE
Q psy13453 151 LKGLQAYLRKHISLAKKFADLVEQDDR-FEL 180 (764)
Q Consensus 151 ~eGy~~~i~~~i~lA~~l~~~I~~~p~-~el 180 (764)
+.+.+++++..+.++++++.+++++. +.-
T Consensus 251 -~~~~~~~~~~~~~~~~l~~~L~~~~~~l~~ 280 (393)
T 1n8p_A 251 -KTLHLRVRQAALSANKIAEFLAADKENVVA 280 (393)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHTSCTTTEEE
T ss_pred -chHHHHHHHHHHHHHHHHHHHHhCCCCceE
Confidence 44677788888899999999998876 653
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.019 Score=63.90 Aligned_cols=62 Identities=8% Similarity=-0.014 Sum_probs=48.3
Q ss_pred cCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEee----CCcccccccCchhhhc-------CCCceeccc
Q psy13453 31 LSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYC----GRTLHQDIQSLNAPVS-------NGPLKVGGV 99 (764)
Q Consensus 31 LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatA----GTT~~G~iDpi~~ia~-------~~wlHVDa~ 99 (764)
+|... +.||+++++++|+++|+++|+++ +-+++... ++..+|.+++++++++ +++++||.+
T Consensus 138 ~G~~~---~~v~~~~~~~~d~e~l~~~l~~~-----tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea 209 (431)
T 3ht4_A 138 YNIGY---NAVPLTEGGLVDFEAVAAAIHSN-----TKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNC 209 (431)
T ss_dssp GTCEE---EECCBCTTSSBCHHHHHHHCCTT-----EEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECT
T ss_pred cCCEE---EEeCCCCCCCcCHHHHHhhcCCC-----CeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 67666 89999989999999999999753 22344443 7888999999999764 689999985
Q ss_pred c
Q psy13453 100 L 100 (764)
Q Consensus 100 l 100 (764)
.
T Consensus 210 ~ 210 (431)
T 3ht4_A 210 Y 210 (431)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.044 Score=60.98 Aligned_cols=155 Identities=11% Similarity=0.013 Sum_probs=89.6
Q ss_pred HHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEee----CCcccccccCchhhhc-------CCCc
Q psy13453 26 KATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYC----GRTLHQDIQSLNAPVS-------NGPL 94 (764)
Q Consensus 26 KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatA----GTT~~G~iDpi~~ia~-------~~wl 94 (764)
+.+...|+.. +.||+ +++.+|+++|+++|++.. ++-+++... ++-++|.+.|++++++ ++++
T Consensus 143 ~~l~~~G~~~---~~v~~-~~~~~d~e~l~~~i~~~~---~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~l 215 (427)
T 3hvy_A 143 GSLREYGVKY---KMVDL-KDGKVDINTVKEELKKDD---SIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIV 215 (427)
T ss_dssp CCTGGGTCEE---EECCC-BTTBCCHHHHHHHHHHCT---TEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEE
T ss_pred hHHHHcCCEE---EEecC-CCCCcCHHHHHHHhhCCC---CCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEE
Confidence 4455567766 88888 789999999999998410 122444333 7889999999999774 6899
Q ss_pred eecccccccc---------ceeeeecCCCccccc------cc-cccc------c--CCcccC--CCCcccHHHHHHHHHH
Q psy13453 95 KVGGVLRRVY---------SSCLVPRGQKSLRTT------VL-FHFL------F--QHWQIP--LGRRFRALKLWMTLRS 148 (764)
Q Consensus 95 HVDa~l~~~y---------~s~ll~rd~~~l~~~------~s-~~~d------~--~d~tle--~SRr~~ALklWatL~~ 148 (764)
+||.+..... +-++...-.+.+... +- ...+ . ...++. ++=.+. ..|+.++
T Consensus 216 ivD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~--~a~~~~~- 292 (427)
T 3hvy_A 216 FVDNCYGEFVEEKEPTDVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGIGGECGSTFG--VMRSLYE- 292 (427)
T ss_dssp EEECTTCTTTSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTT--CHHHHHH-
T ss_pred EEECCccccccCCCCcccCCeEEEECCcccccccccceEEEEEECHHHHHHHHHHhhcCCcccccCCCHH--HHHHHHH-
Confidence 9998642211 012222222222110 00 0000 0 011111 111111 1344443
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCce-----eEEEEe
Q psy13453 149 YGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMG-----LVCFRL 193 (764)
Q Consensus 149 lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~-----iV~Fry 193 (764)
|.+-...++++..+.|+++++.++++ ++++... ... +++|..
T Consensus 293 -gl~~~~~r~~~~~~~a~~la~~L~~~-g~~V~p~-~~~~~~~li~~~~l 339 (427)
T 3hvy_A 293 -GLFMAPHVTIEAVKGAVFCARIMELA-GFDVLPK-YNDKRTDIIQAIKF 339 (427)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEESC-TTSCCSSSEEEEEC
T ss_pred -hHhHHHHHHHHHHHHHHHHHHHHHhC-CCeecCC-CCCCCceEEEEEeC
Confidence 44556689999999999999999987 4677433 333 777765
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.13 Score=55.36 Aligned_cols=109 Identities=10% Similarity=-0.037 Sum_probs=61.0
Q ss_pred ccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhc----CCCeEEeCCCCceeEEEEeeccccccccccccCccCCc
Q psy13453 137 FRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQ----DDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGD 212 (764)
Q Consensus 137 ~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~----~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~ 212 (764)
...+...+++..+-.-.-.+.+++..++.+++.+.+++ +|.+..+ ++.-+.+.|.+.. ..
T Consensus 281 ~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~---------------~~ 344 (395)
T 3nx3_A 281 GNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKKR-KGLGFMQGLSLDK---------------SV 344 (395)
T ss_dssp CCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEECT---------------TS
T ss_pred CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EeEEEEEEEEeCC---------------cc
Confidence 34454444443332111124445555555666655554 4544432 2233455555421 00
Q ss_pred cHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13453 213 NDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATE 268 (764)
Q Consensus 213 d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~ 268 (764)
-..++.++|.++|..+... +..++|++ .+..+++++++++++.|+++.+
T Consensus 345 --~~~~~~~~l~~~Gi~v~~~----~~~~iRi~-~~~~~t~e~i~~~l~~l~~~l~ 393 (395)
T 3nx3_A 345 --KVAKVIQKCQENALLLISC----GENDLRFL-PPLILQKEHIDEMSEKLRKALK 393 (395)
T ss_dssp --CHHHHHHHHHHTTEECEEE----TTTEEEEC-CCTTCCHHHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHCCCEEecC----CCCEEEEE-CCCCCCHHHHHHHHHHHHHHHH
Confidence 1246788888899754433 35689984 3556689999999999988754
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.23 Score=58.74 Aligned_cols=241 Identities=11% Similarity=0.031 Sum_probs=130.2
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCC-CCc----c-----cHHHHHHHHHHHhhCCCCc-EEEEeeCCcccccccCchhh
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPD-SEW----L-----AYLTLRTIYESFRKSFLCP-MCSGYCGRTLHQDIQSLNAP 88 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~-~~r----m-----D~~aLe~~I~~~~~~G~~p-~~VatAGTT~~G~iDpi~~i 88 (764)
.|.|+..++.+.|... +.++.+. ++. + |+++|+++|+++... +.| ++|.|-+ +++|.+-|++++
T Consensus 244 ~H~S~~~~l~lsGa~p---v~v~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~-k~p~~vivt~p-n~~G~v~dl~~I 318 (715)
T 3n75_A 244 CHKSLTHLMMMSDVTP---IYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNA-TWPVHAVITNS-TYDGLLYNTDFI 318 (715)
T ss_dssp CCHHHHHHHHHSCCEE---EEECCCBCTTCCBCCCCGGGGSHHHHHHHHHHSTTC-CSCSEEEEESS-CTTSEEECHHHH
T ss_pred ccHHHHHHHHHcCCEE---EEEeccccccccccCcccccCCHHHHHHHHhhCcCc-cCceEEEEECC-CCCCccCCHHHH
Confidence 6899999999999887 8888753 333 3 999999999975321 123 4566667 889999999998
Q ss_pred hc--CC-Cceeccccccc--cce------ee------------eecCCCcccccccc----cc--cc-------CCcccC
Q psy13453 89 VS--NG-PLKVGGVLRRV--YSS------CL------------VPRGQKSLRTTVLF----HF--LF-------QHWQIP 132 (764)
Q Consensus 89 a~--~~-wlHVDa~l~~~--y~s------~l------------l~rd~~~l~~~~s~----~~--d~-------~d~tle 132 (764)
++ +. +++||.++..- +.. .+ ...-.+++.. ++. +. +. .-..++
T Consensus 319 ~ela~~~~livDEAH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~g-ltqgs~i~v~~~i~~~~~~~~~~~~~ 397 (715)
T 3n75_A 319 KKTLDVKSIHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAA-FSQASMIHVKGDVNEETFNEAYMMHT 397 (715)
T ss_dssp HHHCCCSEEEEECTTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSC-CTTCEEEEEESCCCHHHHHHHHHHTS
T ss_pred HHHhCcCcEEEccccccccccCCccccccccccCcCCCEEEEEEecccccccC-CCCeeEEEeCchhhHHHHHHHHHhhc
Confidence 86 22 36889865311 110 00 0110111110 000 00 00 000122
Q ss_pred CCCcccHH--HHHHHHHHccH-HHHHHHHHHHHHHHHHHHHHHhcCCC------eEEeCCCCce-eEEEEeeccc-ccc-
Q psy13453 133 LGRRFRAL--KLWMTLRSYGL-KGLQAYLRKHISLAKKFADLVEQDDR------FELVCPPSMG-LVCFRLKVRF-WDK- 200 (764)
Q Consensus 133 ~SRr~~AL--klWatL~~lG~-eGy~~~i~~~i~lA~~l~~~I~~~p~------~ell~~P~l~-iV~Fry~P~~-~~~- 200 (764)
.|-..-.+ .+=++++.+-. +| .++.++.++++++|++.|+++++ |+++.+..+. .-||...|.. +.+
T Consensus 398 STSpsy~~~AsldaA~~~~~~~~g-~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf 476 (715)
T 3n75_A 398 TTSPHYGIVASTETAAAMMKGNAG-KRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGF 476 (715)
T ss_dssp CSSCCHHHHHHHHHHHHHHSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCC
T ss_pred CCCchHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccc
Confidence 22222222 33334444432 34 44789999999999999998864 7888765432 2244433210 000
Q ss_pred ---------cccc------ccCccCC---ccHHH-HHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHH
Q psy13453 201 ---------LDNL------FGTISFG---DNDLN-KAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWN 261 (764)
Q Consensus 201 ---------~~~~------~~~~~~~---~d~~n-~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~ 261 (764)
.+.. .+....+ ..-++ ..+.+.|.+.|. .+-.+.. +.+= ++.++-.++++++.+++
T Consensus 477 ~~~~~~~~~~Dp~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I-~~E~~d~---~~vl-~l~s~g~~~~~~~~L~~ 551 (715)
T 3n75_A 477 KNIDNEHMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGI-VVEKTGP---YNLL-FLFSIGIDKTKALSLLR 551 (715)
T ss_dssp TTCCSSSEEECTTEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTC-CCSEEET---TEEE-EECCTTCCHHHHHHHHH
T ss_pred cccccCcccCCCeEEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCC-EEEecCC---CcEE-EEeCCCCCHHHHHHHHH
Confidence 0000 0000000 00122 356677766664 1112112 2222 25778889999999999
Q ss_pred HHHHHHHHHHc
Q psy13453 262 EIRTATEEVLR 272 (764)
Q Consensus 262 ~l~~~~~~i~~ 272 (764)
.+.++.+...+
T Consensus 552 aL~~~~~~~~~ 562 (715)
T 3n75_A 552 ALTDFKRAFDL 562 (715)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhhc
Confidence 99988766543
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.083 Score=58.47 Aligned_cols=104 Identities=12% Similarity=-0.018 Sum_probs=64.4
Q ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe--CCCCceeEEEEeeccccccccccccCccCCccHHHHH
Q psy13453 141 KLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELV--CPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKA 218 (764)
Q Consensus 141 klWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell--~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~ 218 (764)
...++++.+..+ ++.++..++++++.+.+++. ++.++ .++.-+++.+.+.... +.+ ..+
T Consensus 332 aa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~g~~~~v~l~~~~-------------~~~--~~~ 392 (439)
T 2oat_A 332 VAIAALEVLEEE---NLAENADKLGIILRNELMKL-PSDVVTAVRGKGLLNAIVIKETK-------------DWD--AWK 392 (439)
T ss_dssp HHHHHHHHHHHT---THHHHHHHHHHHHHHHHTTS-CTTTEEEEEEETTEEEEEECCCS-------------SCC--HHH
T ss_pred HHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHh-cCCCcEEEEeeeeEEEEEEecCc-------------cHH--HHH
Confidence 345566665443 45677778899999999885 22211 1223344555442100 011 247
Q ss_pred HHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13453 219 VYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATE 268 (764)
Q Consensus 219 L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~ 268 (764)
+.++|.++|..+.. .+..++|+++ +..+++++++++++.|+++.+
T Consensus 393 l~~~l~~~Gv~v~~----~~~~~iRi~~-~~~~t~e~i~~~l~~l~~~l~ 437 (439)
T 2oat_A 393 VCLRLRDNGLLAKP----THGDIIRFAP-PLVIKEDELRESIEIINKTIL 437 (439)
T ss_dssp HHHHHHHTTEECCB----SSSSEEEECC-CTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCeEEec----CCCCEEEEEC-ccCCCHHHHHHHHHHHHHHHH
Confidence 88888888874332 2356899964 446789999999999988754
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=95.00 E-value=0.014 Score=62.96 Aligned_cols=210 Identities=8% Similarity=-0.046 Sum_probs=120.0
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCC--CCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccCc---hhhhc---
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLP--DSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQSL---NAPVS--- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd--~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDpi---~~ia~--- 90 (764)
.+.+...++..+|... +.+|++ +++.+|+++|+++|++.. ..+.+ +-+.++.++|.+=|. +++++
T Consensus 129 ~y~~~~~~~~~~g~~~---~~~~~~~~~~~~~d~~~l~~~l~~~~---~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~ 202 (396)
T 2q7w_A 129 SWPNHKSVFNSAGLEV---REYAYYDAENHTLDFDALINSLNEAQ---AGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSV 202 (396)
T ss_dssp CCTHHHHHHHHTTCEE---EEEECEETTTTEECHHHHHHHHTTCC---TTCEEEEECSSCTTTCCCCCHHHHHHHHHHHH
T ss_pred CchhHHHHHHHcCCce---EEEecccCCCCCcCHHHHHHHHHhCC---CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 4567888899999876 889996 678999999999997531 12344 568888899998544 44543
Q ss_pred --CCCceeccccccc-cc------e-----------eeeecCCCccc-cccccccccC---Cc----cc---------CC
Q psy13453 91 --NGPLKVGGVLRRV-YS------S-----------CLVPRGQKSLR-TTVLFHFLFQ---HW----QI---------PL 133 (764)
Q Consensus 91 --~~wlHVDa~l~~~-y~------s-----------~ll~rd~~~l~-~~~s~~~d~~---d~----tl---------e~ 133 (764)
++++++|...... ++ + +++..-.+.+- .-+...+-+. +. .+ ..
T Consensus 203 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (396)
T 2q7w_A 203 EKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRAN 282 (396)
T ss_dssp HHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred HCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEeccccccccccccceEEEEcCCHHHHHHHHHHHHHHHhhc
Confidence 8899999863211 10 0 01111111111 0000000000 00 00 00
Q ss_pred CCcccHHHHHHHHHHcc--------HHHHHHHHHHHHHHHHHHHHHHhcCC---CeEEeCCCCceeEEEEeecccccccc
Q psy13453 134 GRRFRALKLWMTLRSYG--------LKGLQAYLRKHISLAKKFADLVEQDD---RFELVCPPSMGLVCFRLKVRFWDKLD 202 (764)
Q Consensus 134 SRr~~ALklWatL~~lG--------~eGy~~~i~~~i~lA~~l~~~I~~~p---~~ell~~P~l~iV~Fry~P~~~~~~~ 202 (764)
.-....+..+++...+. .+.+.++.++..+..+++.+.+++.. ++++. .|+.+...|-
T Consensus 283 ~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~---------- 351 (396)
T 2q7w_A 283 YSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFI-IKQNGMFSFS---------- 351 (396)
T ss_dssp TSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHH-HHCCSSEEEC----------
T ss_pred cCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccee-cCCCceEEEe----------
Confidence 11124455555555543 24666677777888889999998864 35543 3454555441
Q ss_pred ccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 203 NLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 203 ~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
+.+ ...+.+.+.+.|..+.. .+|+++.. .++++++.+++.|+++
T Consensus 352 --------~~~--~~~~~~~l~~~gv~v~~--------~~Ris~~~--~~~e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 352 --------GLT--KEQVLRLREEFGVYAVA--------SGRVNVAG--MTPDNMAPLCEAIVAV 395 (396)
T ss_dssp --------CCC--HHHHHHHHHHHCEECCT--------TCEEEGGG--CCTTTHHHHHHHHHHH
T ss_pred --------cCC--HHHHHHHHHhcCeeecC--------CceEEEee--cCHHHHHHHHHHHHhc
Confidence 111 13456666677864321 26998874 3788999999988764
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=94.92 E-value=0.39 Score=52.87 Aligned_cols=105 Identities=10% Similarity=-0.058 Sum_probs=64.6
Q ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcC----CCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHH
Q psy13453 141 KLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQD----DRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLN 216 (764)
Q Consensus 141 klWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~----p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n 216 (764)
...++|+.+-.+ ++.++..++++++.+.|++. +.+..+ ++.-+++.|.+... ..+ .
T Consensus 321 aa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~-~~~g~~~~i~~~~~--------------~~~--~ 380 (433)
T 1z7d_A 321 ICVEALNVLINE---KLCENAEKLGGPFLENLKRELKDSKIVRDV-RGKGLLCAIEFKNE--------------LVN--V 380 (433)
T ss_dssp HHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHTTCTTEEEE-EEETTEEEEEECTT--------------TCC--H
T ss_pred HHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EeeeeEEEEEEccC--------------hhH--H
Confidence 335556555443 45666677888888888753 322221 23334555554310 001 2
Q ss_pred HHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 217 KAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 217 ~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
.++.++|.++|.++... +..++|+++ +..+++++++.+++.|+++.+++
T Consensus 381 ~~~~~~l~~~Gv~v~~~----~~~~iRi~~-~~~~t~e~i~~~l~~l~~~l~~~ 429 (433)
T 1z7d_A 381 LDICLKLKENGLITRDV----HDKTIRLTP-PLCITKEQLDECTEIIVKTVKFF 429 (433)
T ss_dssp HHHHHHHHHTTEECCEE----TTTEEEECC-CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCeEEecC----CCCEEEEEC-CcCCCHHHHHHHHHHHHHHHHHH
Confidence 47888888888744322 346899954 44678999999999999887665
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=94.87 E-value=0.87 Score=50.27 Aligned_cols=203 Identities=11% Similarity=-0.012 Sum_probs=107.9
Q ss_pred CeEEecCCC--CC--------cccHHHHHHHHHHHhhCCCCcEEE-EeeCCcccccccC----chhhhc-----CCCcee
Q psy13453 37 QVRLSGLPD--SE--------WLAYLTLRTIYESFRKSFLCPMCS-GYCGRTLHQDIQS----LNAPVS-----NGPLKV 96 (764)
Q Consensus 37 ~v~~Vpvd~--~~--------rmD~~aLe~~I~~~~~~G~~p~~V-atAGTT~~G~iDp----i~~ia~-----~~wlHV 96 (764)
.++.+|.++ .. ..|+++|+++|++.. ..+.+| ..--..++|.+=| ++++.+ ++++++
T Consensus 194 ~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~---~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~ 270 (449)
T 2cjg_A 194 PRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRP---HDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIF 270 (449)
T ss_dssp CEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHST---TTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEE
T ss_pred CcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcC---CceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEE
Confidence 567888765 22 378888999997521 123343 3333355786444 555554 889999
Q ss_pred ccccccc------cc--------eeeeecCCCccccc-cccccccCC--------cccCC-CCcccHHHHH---HHHHHc
Q psy13453 97 GGVLRRV------YS--------SCLVPRGQKSLRTT-VLFHFLFQH--------WQIPL-GRRFRALKLW---MTLRSY 149 (764)
Q Consensus 97 Da~l~~~------y~--------s~ll~rd~~~l~~~-~s~~~d~~d--------~tle~-SRr~~ALklW---atL~~l 149 (764)
|...... ++ -++.+ .+.+.-. +-..-+..+ ....+ +=....+... ++|..+
T Consensus 271 DEv~~g~g~~g~~~~~~~~~~~~di~t~--sK~l~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~~~ 348 (449)
T 2cjg_A 271 DEVQTGCGLTGTAWAYQQLDVAPDIVAF--GKKTQVCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVI 348 (449)
T ss_dssp ECTTTTTTTTSSSSTHHHHTCCCSEEEE--CGGGSSEEEEECGGGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHHHH
T ss_pred eccccCCCccCcceeecccCCCceEEEe--cCcccEEEEEECHHHhhhhhhcccCCcccccCCCCCHHHHHHHHHHHHHH
Confidence 9854210 00 01111 0111100 000001111 11111 1123344444 445444
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhc----CCC-eEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHH
Q psy13453 150 GLKGLQAYLRKHISLAKKFADLVEQ----DDR-FELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRII 224 (764)
Q Consensus 150 G~eGy~~~i~~~i~lA~~l~~~I~~----~p~-~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~ 224 (764)
-.+ ++.++.-++.+++.+.|++ .+. +..+ ++.-+++.|.+.. .....++.++|.
T Consensus 349 ~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~-~~~g~~~~~~~~~-----------------~~~~~~~~~~l~ 407 (449)
T 2cjg_A 349 EAE---GLFERAVQHGKYLRARLDELAADFPAVVLDP-RGRGLMCAFSLPT-----------------TADRDELIRQLW 407 (449)
T ss_dssp HHH---THHHHHHHHHHHHHHHHHHHHHHSTTTSEEE-EEETTEEEEECSS-----------------HHHHHHHHHHHH
T ss_pred Hhc---cHHHHHHHHHHHHHHHHHHHHhhCCCceeeE-eeccEEEEEEECC-----------------hHHHHHHHHHHH
Confidence 343 3455666777788888775 354 4332 2344455564421 112357888888
Q ss_pred hcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 225 ARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 225 ~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
++|.++... +..++|++ .+..+++++++.+++.|+++.+++
T Consensus 408 ~~Gv~v~~~----g~~~iRi~-~~~~~t~e~i~~~l~~l~~~l~~~ 448 (449)
T 2cjg_A 408 QRAVIVLPA----GADTVRFR-PPLTVSTAEIDAAIAAVRSALPVV 448 (449)
T ss_dssp HTTEECEEE----TTTEEEEC-CCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HCCeEEecC----CCCEEEEE-CCCCCCHHHHHHHHHHHHHHHHHh
Confidence 888754432 34689985 355678999999999999887653
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.47 Score=52.11 Aligned_cols=106 Identities=7% Similarity=-0.082 Sum_probs=61.9
Q ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe--CCCCceeEEEEeeccccccccccccCccCCccHHHHHHH
Q psy13453 143 WMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELV--CPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVY 220 (764)
Q Consensus 143 WatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell--~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~ 220 (764)
-++|+.+-.+ ++.++..++.+++.+.+++.+++.++ .++.-+++.|.+.... .....-..++.
T Consensus 339 ~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~------------~~~~~~~~~~~ 403 (449)
T 3a8u_X 339 LAALCLLQKE---NLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRD------------GDAIVRPFEAG 403 (449)
T ss_dssp HHHHHHHHHT---THHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBT------------TBSSHHHHHHH
T ss_pred HHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCc------------ccccccHHHHH
Confidence 3444444333 45667777788888888874433221 1233345555543110 00000113578
Q ss_pred HHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 221 DRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 221 ~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
++|.++|.++... + .++|++. ...+++++++.+++.|+++.++
T Consensus 404 ~~l~~~Gv~v~~~----g-~~iRis~-~~~~t~~~i~~~l~~l~~~l~~ 446 (449)
T 3a8u_X 404 MALWKAGFYVRFG----G-DTLQFGP-TFNSKPQDLDRLFDAVGEVLNK 446 (449)
T ss_dssp HHHHHHTEECEEE----T-TEEEECC-CTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCcEEecC----C-CEEEEEC-CCcCCHHHHHHHHHHHHHHHHH
Confidence 8888888754433 2 6799864 2367899999999999988654
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.49 Score=51.57 Aligned_cols=103 Identities=11% Similarity=0.005 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHhc----CCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEE
Q psy13453 157 YLRKHISLAKKFADLVEQ----DDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIV 232 (764)
Q Consensus 157 ~i~~~i~lA~~l~~~I~~----~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs 232 (764)
+.++.-++.+++.+.+++ .+.+.. .++.-+.+.|.+....... ........++.++|.++|.++..
T Consensus 326 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~-~~~~g~~~~i~~~~~~~~~---------~~~~~~~~~~~~~l~~~Gv~v~~ 395 (433)
T 1zod_A 326 LVARANVMGDRLRRGLLDLMERFDCIGD-VRGRGLLLGVEIVKDRRTK---------EPADGLGAKITRECMNLGLSMNI 395 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTEEE-EEEETTEEEEEEEEETTTT---------EECTTHHHHHHHHHHHTTEECCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeEE-EEEEEEEEEEEEecCcccc---------CCChHHHHHHHHHHHHCCCeEec
Confidence 445555667777777765 354432 2334445556553210000 00012245788888888975443
Q ss_pred eceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 233 KGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 233 ~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
.....+..++|++ .+..+++++++.+++.|+++.+++
T Consensus 396 ~~~~~~~~~lRi~-~~~~~t~~~i~~~l~~l~~~l~~~ 432 (433)
T 1zod_A 396 VQLPGMGGVFRIA-PPLTVSEDEIDLGLSLLGQAIERA 432 (433)
T ss_dssp ECCTTSCCEEEEC-CCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCEEEEE-CCcCCCHHHHHHHHHHHHHHHHHh
Confidence 3322223689984 344568999999999999887654
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.11 Score=57.59 Aligned_cols=73 Identities=4% Similarity=-0.136 Sum_probs=53.5
Q ss_pred eeeHHHHHh----hcCCCCCCeEEecC-CCC--CcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccCchh---hh
Q psy13453 21 IYESFKATH----SLSGTPDQVRLSGL-PDS--EWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQSLNA---PV 89 (764)
Q Consensus 21 ~YSv~KAa~----~LGl~~~~v~~Vpv-d~~--~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDpi~~---ia 89 (764)
|.+...+++ ..|... +.+|+ |++ +.+|+++|+++|++.. ..+.+ +-..+..++|.+=+.++ ++
T Consensus 155 ~~~~~~~~~~~~~~~G~~v---~~~~~~~~~~~~~~d~e~l~~~l~~~~---~~~~~v~~~~p~NPtG~~~~~~~l~~i~ 228 (448)
T 3meb_A 155 WPNHYGIYDKVFNKLKVPY---KEYTYLRKDGELEIDFSNTKKDIQSAP---EKSIFLFHACAHNPSGIDFTEAQWKELL 228 (448)
T ss_dssp CTHHHHHHHHHHCTTTSCC---EEECCBCTTSCSSBCHHHHHHHHHHSC---TTCEEEEESSSCTTTCCCCCHHHHHHHH
T ss_pred CHhHHHHHHhhHHhCCCeE---EEEeccccccCCCcCHHHHHHHHHhCC---CCcEEEEeCCCCCCCCcCCCHHHHHHHH
Confidence 455667777 888877 99999 664 8999999999998631 12344 56677889998755444 55
Q ss_pred c-----CCCceeccc
Q psy13453 90 S-----NGPLKVGGV 99 (764)
Q Consensus 90 ~-----~~wlHVDa~ 99 (764)
+ ++++++|.+
T Consensus 229 ~l~~~~~~~li~Dea 243 (448)
T 3meb_A 229 PIMKEKKHIAFFDSA 243 (448)
T ss_dssp HHHHHHTCEEEEEES
T ss_pred HHHHHCCCEEEEecc
Confidence 4 889999885
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=94.46 E-value=0.41 Score=52.30 Aligned_cols=203 Identities=7% Similarity=-0.061 Sum_probs=101.7
Q ss_pred cHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccC----chhhhc-----CCCceecccccccc-c--------e----
Q psy13453 50 AYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQS----LNAPVS-----NGPLKVGGVLRRVY-S--------S---- 106 (764)
Q Consensus 50 D~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDp----i~~ia~-----~~wlHVDa~l~~~y-~--------s---- 106 (764)
|+++|+++|++... .+.+ +..-...+.|.+-| ++++.+ ++++++|.+..... + +
T Consensus 188 d~~~le~~l~~~~~---~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~~g~~~~~~~~~~~~d 264 (434)
T 3l44_A 188 NVETLKEALDKWGH---EVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFMYGGAQDLLGVTPD 264 (434)
T ss_dssp CHHHHHHHHHHHGG---GEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTSSSSCHHHHHTCCCS
T ss_pred cHHHHHHHHHhCCC---CEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccceeccccHHHHHcCCCCC
Confidence 89999999986421 2333 44444445677766 666655 88999998643101 0 0
Q ss_pred eeeecCCCccccccccc--------cccC-C---cccCCCCcccHHHHHHH---HHHccHHHHHHHHHHHHHHHHHHHHH
Q psy13453 107 CLVPRGQKSLRTTVLFH--------FLFQ-H---WQIPLGRRFRALKLWMT---LRSYGLKGLQAYLRKHISLAKKFADL 171 (764)
Q Consensus 107 ~ll~rd~~~l~~~~s~~--------~d~~-d---~tle~SRr~~ALklWat---L~~lG~eGy~~~i~~~i~lA~~l~~~ 171 (764)
++.+ .+.+-.-+... .+.. . ....++-....+.+.++ +..+-. .+++++..++.+++.+.
T Consensus 265 i~t~--sK~~~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~ 339 (434)
T 3l44_A 265 LTAL--GKVIGGGLPIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQ---EGLYEKLDELGATLEKG 339 (434)
T ss_dssp EEEE--EGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHH
T ss_pred eeeh--hhhhcCCcCeeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHH
Confidence 0100 01111000000 0111 1 11222334455544444 443333 34555566666677776
Q ss_pred Hhc----CCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEecc
Q psy13453 172 VEQ----DDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAIC 247 (764)
Q Consensus 172 I~~----~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~ 247 (764)
|++ .+.... .++.-+++.|.+........... .........++.++|.++|.++... +...+|++
T Consensus 340 L~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~Gv~v~~~----~~~~~rl~-- 408 (434)
T 3l44_A 340 ILEQAAKHNIDIT-LNRLKGALTVYFTTNTIEDYDAA----QDTDGEMFGKFFKLMLQEGVNLAPS----KYEAWFLT-- 408 (434)
T ss_dssp HHHHHHHTTCCEE-EEEETTEEEEEESSSCCCSHHHH----HHSCHHHHHHHHHHHHHTTEECCSS----TTCCEECC--
T ss_pred HHHHHHhCCCCEE-EEeeccEEEEEEecCcccchhhc----cccCHHHHHHHHHHHHHCCeEEeec----CCCcEEEe--
Confidence 665 332221 22334455555532111000000 0001123367888999999643221 22356763
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHc
Q psy13453 248 SSQTEESDVQLGWNEIRTATEEVLR 272 (764)
Q Consensus 248 np~Tt~e~i~~~l~~l~~~~~~i~~ 272 (764)
..+++++++++++.|+++.+++.+
T Consensus 409 -~~~t~e~i~~~l~~l~~~l~~~~~ 432 (434)
T 3l44_A 409 -TEHTKEDIEYTIEAVGRAFAALAD 432 (434)
T ss_dssp -TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -cccCHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999877654
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=94.42 E-value=0.44 Score=51.93 Aligned_cols=199 Identities=8% Similarity=-0.085 Sum_probs=106.0
Q ss_pred CeEEecCCC------CCcccHHHHHHHHHHHhhCCCCcEEEEeeC--CcccccccC----chhhhc-----CCCceeccc
Q psy13453 37 QVRLSGLPD------SEWLAYLTLRTIYESFRKSFLCPMCSGYCG--RTLHQDIQS----LNAPVS-----NGPLKVGGV 99 (764)
Q Consensus 37 ~v~~Vpvd~------~~rmD~~aLe~~I~~~~~~G~~p~~VatAG--TT~~G~iDp----i~~ia~-----~~wlHVDa~ 99 (764)
.++.+|++. .+.+|+++|+++|++.. ..+.+|-.-+ .-++|.+=| ++++++ ++++|+|..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~---~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~ 247 (429)
T 1s0a_A 171 ENLFAPAPQSRMDGEWDERDMVGFARLMAAHR---HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEI 247 (429)
T ss_dssp CCEEECCCCSBC-CCCCGGGGHHHHHHHHHHT---TTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECT
T ss_pred CceEeCCCcccccccchHHHHHHHHHHHHhCC---CCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeeh
Confidence 457788752 23699999999998531 1234443445 466896544 666665 899999996
Q ss_pred cccc-c-c------------eeeeecCCCccccc-ccccc-----c----cCC---cc--cCCCCcccHHHH---HHHHH
Q psy13453 100 LRRV-Y-S------------SCLVPRGQKSLRTT-VLFHF-----L----FQH---WQ--IPLGRRFRALKL---WMTLR 147 (764)
Q Consensus 100 l~~~-y-~------------s~ll~rd~~~l~~~-~s~~~-----d----~~d---~t--le~SRr~~ALkl---WatL~ 147 (764)
.... + + -++.+ .+.+..- +...+ + +.. .. ..++-....+.. -+++.
T Consensus 248 ~~~~g~~g~~~~~~~~~~~~d~~t~--sK~l~~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~ 325 (429)
T 1s0a_A 248 ATGFGRTGKLFACEHAEIAPDILCL--GKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLA 325 (429)
T ss_dssp TTTTTTTSSSSGGGGGTCCCSEEEE--CGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHH
T ss_pred hhCCcccchHHHhhhcCCCCCEEEe--cccccCCCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHH
Confidence 4210 0 0 01111 1111110 01100 0 000 00 011112234433 34444
Q ss_pred HccHHHHHHHHHHHHHHHHHHHHHHhcC---CCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHH
Q psy13453 148 SYGLKGLQAYLRKHISLAKKFADLVEQD---DRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRII 224 (764)
Q Consensus 148 ~lG~eGy~~~i~~~i~lA~~l~~~I~~~---p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~ 224 (764)
.+-.++ ..++..++.+++.+.|++. |++..+ .+.-+++.|.+.. ..+ ..++.++|.
T Consensus 326 ~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~~~-~~~g~~~~~~~~~---------------~~~--~~~l~~~l~ 384 (429)
T 1s0a_A 326 ILESGD---WQQQVADIEVQLREQLAPARDAEMVADV-RVLGAIGVVETTH---------------PVN--MAALQKFFV 384 (429)
T ss_dssp HHHTCH---HHHHHHHHHHHHHHHHGGGGGCTTEEEE-EEETTEEEEEESS---------------CBC--HHHHHHHHH
T ss_pred HHHhCC---HHHHHHHHHHHHHHHHHHHhcCCCEEEE-EEeeEEEEEEECC---------------ccc--HHHHHHHHH
Confidence 433333 4556667788999988874 555432 2233345554421 011 246778888
Q ss_pred hcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13453 225 ARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 225 ~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~ 267 (764)
++|.+... . ..++|+++ ...+++++++.+++.|+++.
T Consensus 385 ~~Gi~v~~---~--~~~iRis~-~~~~t~e~i~~~~~~l~~~~ 421 (429)
T 1s0a_A 385 EQGVWIRP---F--GKLIYLMP-PYIILPQQLQRLTAAVNRAV 421 (429)
T ss_dssp HTTEECCC---B--TTEEEECC-CTTCCHHHHHHHHHHHHHHT
T ss_pred HCCCEEec---c--CCEEEEEC-CCCCCHHHHHHHHHHHHHHH
Confidence 88864322 1 25799863 34568999999999998764
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=94.35 E-value=0.041 Score=59.78 Aligned_cols=74 Identities=5% Similarity=-0.183 Sum_probs=55.5
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCC--CCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccCchh---hhc---
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLP--DSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQSLNA---PVS--- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd--~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDpi~~---ia~--- 90 (764)
.+.+...+++..|... +.+|++ +++.+|+++|+++|++.. ..+.+ +-+.+..++|.+=+.++ +++
T Consensus 140 ~y~~~~~~~~~~g~~~---~~~~~~~~~~~~~d~~~l~~~l~~~~---~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~ 213 (409)
T 4eu1_A 140 GYPNHESIFAKAGMEL---TPYSYYDPATKGLNLAGMLECLDKAP---EGSVILVHACAHNPTGVDPTHDDWRQVCDVIK 213 (409)
T ss_dssp CCTHHHHHHHHTTCEE---EEECCEETTTTEECHHHHHHHHHHSC---TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHcCCeE---EEEEeecCcCCcCcHHHHHHHHHhCC---CCcEEEEECCCCCCCCCCCCHHHHHHHHHHHH
Confidence 4566788899999876 999983 578999999999997531 12344 55677889999866444 543
Q ss_pred --CCCceeccc
Q psy13453 91 --NGPLKVGGV 99 (764)
Q Consensus 91 --~~wlHVDa~ 99 (764)
++++++|.+
T Consensus 214 ~~~~~li~De~ 224 (409)
T 4eu1_A 214 RRNHIPFVDMA 224 (409)
T ss_dssp HTTCEEEEEES
T ss_pred hCCcEEEEecc
Confidence 889999986
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=94.33 E-value=0.15 Score=55.22 Aligned_cols=96 Identities=10% Similarity=0.104 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHh-cCcEEEE
Q psy13453 154 LQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIA-RKVIYIV 232 (764)
Q Consensus 154 y~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~-~G~~~vs 232 (764)
+.++.++..+..+++.+.|++. ++++..+...+.+.+++.|.+. +. .++.++|.+ .|..+..
T Consensus 294 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~------------~~----~~~~~~l~~~~gv~v~~ 356 (400)
T 3asa_A 294 QLEAIHYYRENSDLLRKALLAT-GFEVFGGEHAPYLWVKPTQANI------------SD----RDLFDFFLREYHIAITP 356 (400)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHT-TCEEEECSSSSEEEEECCCTTC------------CT----TTHHHHHHHHHSEECEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCeeeCCCCceEEEEeccCCCC------------CH----HHHHHHHHHhCCEEEeC
Confidence 5556677778888999999987 8887754444556665222111 11 245666654 4765544
Q ss_pred ecee--CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 233 KGSF--QDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 233 ~t~l--~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
.... .+..++|+++ .+++++++++++.|+++.++
T Consensus 357 g~~f~~~~~~~iRis~---~~~~e~i~~~l~~l~~~~~~ 392 (400)
T 3asa_A 357 GIGFGRSGSGFVRFSS---LGKREDILAACERLQMAPAL 392 (400)
T ss_dssp GGGGCGGGTTCEEEEC---CSCHHHHHHHHHHHHC----
T ss_pred hhHhCCCCCCEEEEEe---eCCHHHHHHHHHHHHHHHHh
Confidence 3322 2346899984 45799999999998877544
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.13 Score=56.78 Aligned_cols=138 Identities=13% Similarity=0.061 Sum_probs=79.4
Q ss_pred HhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-------CCCceecccc
Q psy13453 28 THSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-------NGPLKVGGVL 100 (764)
Q Consensus 28 a~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-------~~wlHVDa~l 100 (764)
+..+|+.. +.|+.+ |+++|+++|+++ +-+++...++-++|.+-||+++++ ++++|||+..
T Consensus 142 l~~~G~~v---~~v~~~-----d~~~le~ai~~~-----tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~ 208 (415)
T 2fq6_A 142 LSKLGVTT---SWFDPL-----IGADIVKHLQPN-----TKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTW 208 (415)
T ss_dssp GGGGTCEE---EEECTT-----CGGGGGGGCCTT-----EEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTT
T ss_pred HHHcCcEE---EEECCC-----CHHHHHHhhccC-----CcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCC
Confidence 34567665 777664 889999998753 224445677888999999999874 6789999964
Q ss_pred ccccc--------eeeeecCCCccccc-------ccccccc----CCc-ccCCCCcccHHHHHHHHHHccHHHHHHHHHH
Q psy13453 101 RRVYS--------SCLVPRGQKSLRTT-------VLFHFLF----QHW-QIPLGRRFRALKLWMTLRSYGLKGLQAYLRK 160 (764)
Q Consensus 101 ~~~y~--------s~ll~rd~~~l~~~-------~s~~~d~----~d~-tle~SRr~~ALklWatL~~lG~eGy~~~i~~ 160 (764)
...+. -++...-.|.+-.. +...-+. ..+ ...++ ....+..|+.++ |.+.+..++++
T Consensus 209 a~~~~~~p~~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~~G~-~~~~~~a~~~~~--~l~~l~~r~~~ 285 (415)
T 2fq6_A 209 AAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQ-MVDADTAYITSR--GLRTLGVRLRQ 285 (415)
T ss_dssp TTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTC-CCCHHHHHHHHH--HHHHHHHHHHH
T ss_pred cccccCCccccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHhcCC-CCCHHHHHHHHh--hhhHHHHHHHH
Confidence 22110 01111111111100 0000000 000 00011 122344565544 45677888999
Q ss_pred HHHHHHHHHHHHhcCCCeEEe
Q psy13453 161 HISLAKKFADLVEQDDRFELV 181 (764)
Q Consensus 161 ~i~lA~~l~~~I~~~p~~ell 181 (764)
..+.++++++.|+++|.+.-+
T Consensus 286 ~~~n~~~l~~~L~~~~~v~~v 306 (415)
T 2fq6_A 286 HHESSLKVAEWLAEHPQVARV 306 (415)
T ss_dssp HHHHHHHHHHHHHTCTTEEEE
T ss_pred HHHHHHHHHHHHHcCCCeeEE
Confidence 999999999999998876544
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=93.89 E-value=0.93 Score=50.57 Aligned_cols=195 Identities=10% Similarity=-0.039 Sum_probs=101.2
Q ss_pred ccHHHHHHHHHHHhhCCCCcEEE-EeeCCcccccccC----chhhhc-----CCCceecccccc-ccce-ee--------
Q psy13453 49 LAYLTLRTIYESFRKSFLCPMCS-GYCGRTLHQDIQS----LNAPVS-----NGPLKVGGVLRR-VYSS-CL-------- 108 (764)
Q Consensus 49 mD~~aLe~~I~~~~~~G~~p~~V-atAGTT~~G~iDp----i~~ia~-----~~wlHVDa~l~~-~y~s-~l-------- 108 (764)
.|+++|+++|++....+..+-+| ...-..++|.+=| ++++.+ ++++|+|..... .+.+ ++
T Consensus 240 ~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~ 319 (472)
T 1ohv_A 240 RCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLD 319 (472)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCS
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCC
Confidence 47999999998743222123343 3323445897655 777665 899999997421 0100 00
Q ss_pred ----eecCCCc-cccccccccccC---CcccCCCCcccHHHH---HHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcC--
Q psy13453 109 ----VPRGQKS-LRTTVLFHFLFQ---HWQIPLGRRFRALKL---WMTLRSYGLKGLQAYLRKHISLAKKFADLVEQD-- 175 (764)
Q Consensus 109 ----l~rd~~~-l~~~~s~~~d~~---d~tle~SRr~~ALkl---WatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~-- 175 (764)
+.--.+. +-..+...-++. .....++-.+..+.+ -++|..+-.+ ++.++.-++.++|.+.|++.
T Consensus 320 ~~~Di~t~sK~~l~GG~~~~~~~~~~~~~~~~~T~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~ 396 (472)
T 1ohv_A 320 DPADVMTFSKKMMTGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKRE---DLLSNAAHAGKVLLTGLLDLQA 396 (472)
T ss_dssp SCCSEEEECGGGSSEEEEECGGGSCSSSSSSCCSSSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEccccccCCccCchhhcccccccccCccCccHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHh
Confidence 0000111 111111100111 011112223334433 3445544333 34566667777888777653
Q ss_pred --CC-eEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCC
Q psy13453 176 --DR-FELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTE 252 (764)
Q Consensus 176 --p~-~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt 252 (764)
|. +.-+ .+.-.++.|... .+....++.++|.++|...... +...||++ ....++
T Consensus 397 ~~~~~v~~~-~~~g~~~~~~~~-----------------~~~~~~~~~~~l~~~Gv~~~~~----g~~~iRi~-~~~~~t 453 (472)
T 1ohv_A 397 RYPQFISRV-RGRGTFCSFDTP-----------------DESIRNKLISIARNKGVMLGGC----GDKSIRFR-PTLVFR 453 (472)
T ss_dssp HCTTTCEEE-EEETTEEEEECS-----------------SHHHHHHHHHHHHHTTEECEEE----TTTEEEEC-CCTTCC
T ss_pred hCCCcEEee-cCCceEEEEEeC-----------------ChhHHHHHHHHHHHCCeEEecC----CCCEEEEE-CCCCCC
Confidence 43 3211 223334445321 1122357888898899754332 34689995 445568
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy13453 253 ESDVQLGWNEIRTATEE 269 (764)
Q Consensus 253 ~e~i~~~l~~l~~~~~~ 269 (764)
+++++.+++.|+++.++
T Consensus 454 ~e~i~~~~~~l~~~l~~ 470 (472)
T 1ohv_A 454 DHHAHLFLNIFSDILAD 470 (472)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999887654
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=93.81 E-value=0.071 Score=57.51 Aligned_cols=75 Identities=5% Similarity=-0.208 Sum_probs=53.5
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCC--CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccc---cCchhhhc----
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLP--DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDI---QSLNAPVS---- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd--~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~i---Dpi~~ia~---- 90 (764)
.|.+...+++..|... +.+|++ +++.+|+++|++.+++. . .++-+++-+.++-++|.+ +++.++++
T Consensus 132 ~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~d~~~l~~~l~~~-~-~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~ 206 (401)
T 7aat_A 132 SWGNHTPIFRDAGLQL---QAYRYYDPKTCSLDFTGAMEDISKI-P-EKSIILLHACAHNPTGVDPRQEQWKELASVVKK 206 (401)
T ss_dssp CCTTHHHHHHHTTCEE---EEEECEETTTTEECHHHHHHHHTTS-C-TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHcCCee---EeeeeeccccCccCHHHHHHHHHhC-C-CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh
Confidence 4566778888999865 999986 47899999999998762 1 122233566788899955 55666664
Q ss_pred -CCCceeccc
Q psy13453 91 -NGPLKVGGV 99 (764)
Q Consensus 91 -~~wlHVDa~ 99 (764)
++++.+|.+
T Consensus 207 ~~~~li~Dea 216 (401)
T 7aat_A 207 RNLLAYFDMA 216 (401)
T ss_dssp TTCEEEEEES
T ss_pred CCcEEEEccc
Confidence 778877764
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=93.40 E-value=4.4 Score=44.57 Aligned_cols=126 Identities=12% Similarity=-0.008 Sum_probs=67.4
Q ss_pred cccHHHHHHH---HHHccHHHHHHHHHHHHH-HHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCC
Q psy13453 136 RFRALKLWMT---LRSYGLKGLQAYLRKHIS-LAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFG 211 (764)
Q Consensus 136 r~~ALklWat---L~~lG~eGy~~~i~~~i~-lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~ 211 (764)
....+.+.++ |..+..+.+.+.+++..+ +.+.+.+.+++++.+..+ .+.-+.+.|.+....... . . ...
T Consensus 329 ~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~g~~~~~~~~~~~~~~-~----~-~~~ 401 (460)
T 3gju_A 329 SAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEV-RGDGMLAAVEFVADKDDR-V----F-FDA 401 (460)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEE-EEETTEEEEEECSBTTTT-B----C-CCG
T ss_pred CCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-eeeeEEEEEEEccCcccc-c----c-ccc
Confidence 4445544444 443334444444444333 233444555566655433 233334555543211000 0 0 001
Q ss_pred ccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHc
Q psy13453 212 DNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLR 272 (764)
Q Consensus 212 ~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~ 272 (764)
..+...++.++|.++|.++.... +..++|++. ...+++++++++++.|+++.+++.+
T Consensus 402 ~~~~~~~~~~~l~~~Gv~v~~~~---~~~~iRi~~-~~~~t~e~i~~~l~~l~~~l~~~~~ 458 (460)
T 3gju_A 402 SQKIGPQVATALAASGVIGRAMP---QGDILGFAP-PLCLTREQADIVVSKTADAVKSVFA 458 (460)
T ss_dssp GGCHHHHHHHHHHHTTEECEECS---SSCEEEECC-CTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHCCeEEecCC---CCCEEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 12245678899999997544332 346899842 3356889999999999998877653
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=93.20 E-value=1.4 Score=49.23 Aligned_cols=122 Identities=10% Similarity=-0.033 Sum_probs=68.3
Q ss_pred cccHHHHHHHHH---HccHHHHHHHHHHHH-HHHHHHHHHHhcC---CCeEEeCCCCceeEEEEeeccccccccccccCc
Q psy13453 136 RFRALKLWMTLR---SYGLKGLQAYLRKHI-SLAKKFADLVEQD---DRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTI 208 (764)
Q Consensus 136 r~~ALklWatL~---~lG~eGy~~~i~~~i-~lA~~l~~~I~~~---p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~ 208 (764)
.+..+.+.+++. .+-.+ +++++.. +..+++.+.|++. |.+..+ .+.-+.+.|.+.+..... . ..
T Consensus 326 ~~np~a~aAa~aaL~~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v-r~~G~~~~i~~~~~~~~~--~---~~ 396 (472)
T 3hmu_A 326 SGHPVAAAVALENLRILEEE---NILDHVRNVAAPYLKEKWEALTDHPLVGEA-KIVGMMASIALTPNKASR--A---KF 396 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHT---THHHHHHHTHHHHHHHHHHGGGGSTTEEEE-EEETTEEEEEECSCGGGT--C---CB
T ss_pred CCCHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-EecCceEEEEEecCcccc--c---cc
Confidence 445555554444 44333 4455555 6667777777653 333322 233334555553211000 0 00
Q ss_pred cCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHc
Q psy13453 209 SFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLR 272 (764)
Q Consensus 209 ~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~ 272 (764)
.....+...++.++|.++|.++... + .++|++ .....++++++++++.|+++.+++.+
T Consensus 397 ~~~~~~~~~~~~~~l~~~Gv~v~~~----g-~~iRi~-p~~~~t~e~i~~~l~~l~~~l~~~~~ 454 (472)
T 3hmu_A 397 ASEPGTIGYICRERCFANNLIMRHV----G-DRMIIS-PPLVITPAEIDEMFVRIRKSLDEAQA 454 (472)
T ss_dssp SSCTTHHHHHHHHHHHHTTBCCEEE----T-TEEEEC-CCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHCCcEEEec----C-CEEEEE-CCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0000334678899999999755433 2 689984 33456899999999999888776643
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=93.10 E-value=0.99 Score=49.65 Aligned_cols=51 Identities=10% Similarity=-0.015 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHc
Q psy13453 216 NKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLR 272 (764)
Q Consensus 216 n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~ 272 (764)
..++.++|.++|.++... + .++|++ .+...++++++++++.|+++.+++..
T Consensus 395 ~~~~~~~l~~~Gv~~~~~----~-~~iRi~-~~~~~t~e~i~~~l~~l~~~l~~~~~ 445 (448)
T 3dod_A 395 GYKVSLKMRELGMLTRPL----G-DVIAFL-PPLASTAEELSEMVAIMKQAIHEVTS 445 (448)
T ss_dssp HHHHHHHHHHTTEECCEE----T-TEEEEC-CCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCcEEecc----C-CEEEEE-CCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 357888899999754322 2 689985 34556899999999999999877653
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=92.66 E-value=0.88 Score=49.52 Aligned_cols=217 Identities=10% Similarity=-0.077 Sum_probs=104.3
Q ss_pred CeEEecCCCC---CcccHHHHHHHHHHHhhCCCCcEE-EEeeCCc-ccccccC----chhhhc-----CCCceecccccc
Q psy13453 37 QVRLSGLPDS---EWLAYLTLRTIYESFRKSFLCPMC-SGYCGRT-LHQDIQS----LNAPVS-----NGPLKVGGVLRR 102 (764)
Q Consensus 37 ~v~~Vpvd~~---~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT-~~G~iDp----i~~ia~-----~~wlHVDa~l~~ 102 (764)
.+..+|.+.. +..|+++|+++|++... ..+.+ +..-..- +.|.+-| ++++++ ++++++|.+...
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~le~~l~~~~~--~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~ 236 (430)
T 3i4j_A 159 AWPKLPKPDPARNGAEDAEGLRALLEREGP--ETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSG 236 (430)
T ss_dssp GSCEECCCCTTSCHHHHHTHHHHHHHHHCG--GGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTT
T ss_pred CceEcCCCcccchhhHHHHHHHHHHHhcCC--CCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhC
Confidence 4567777655 45789999999986310 12334 3444444 6777655 666654 899999975321
Q ss_pred c-c-c---e----------eeeecCCCccccc-ccccc--------c-cCC----cccCCCCcccHHHHHHH---HHHcc
Q psy13453 103 V-Y-S---S----------CLVPRGQKSLRTT-VLFHF--------L-FQH----WQIPLGRRFRALKLWMT---LRSYG 150 (764)
Q Consensus 103 ~-y-~---s----------~ll~rd~~~l~~~-~s~~~--------d-~~d----~tle~SRr~~ALklWat---L~~lG 150 (764)
. + + + ++.+ .+.+..- +...+ + +.. +....+=....+...++ |..+.
T Consensus 237 ~~~~g~~~~~~~~~~~~~di~t~--sK~l~~G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~ 314 (430)
T 3i4j_A 237 MGRCGSPLALSRWSGVTPDIAVL--GKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVE 314 (430)
T ss_dssp TTTTSSSSGGGGTTTCCCSEEEE--CGGGTTTSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHH
T ss_pred CCcccchhhhhhhcCCCCcEEEE--cccccCCccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHH
Confidence 1 0 0 0 0111 0111100 00000 0 000 01111113344544444 44333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh----cCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhc
Q psy13453 151 LKGLQAYLRKHISLAKKFADLVE----QDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIAR 226 (764)
Q Consensus 151 ~eGy~~~i~~~i~lA~~l~~~I~----~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~ 226 (764)
.+.+ +++..+..+++.+.++ ++|.+..+ ++.-+.+.|.+....... .....+...++.++|.++
T Consensus 315 ~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~ 382 (430)
T 3i4j_A 315 REDL---TGAAKERGAQLLAGLQALQARFPQMMQV-RGTGLLLGVVLGDLATGQ--------AFETPGIASRIGAAALKR 382 (430)
T ss_dssp HTTH---HHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEEC--------------------CHHHHHHHHHHT
T ss_pred cccH---HHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEEEEeccccccC--------CCccHHHHHHHHHHHHhC
Confidence 4444 4444444555555444 45665543 233445555543110000 000011135788899999
Q ss_pred CcEEEEec-ee--CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 227 KVIYIVKG-SF--QDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 227 G~~~vs~t-~l--~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
|.++.... .. .+..++|+++. ...++++++++++.|+++.+++
T Consensus 383 Gv~v~~~~~~~~~~~~~~iRi~~~-~~~t~e~i~~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 383 GLITYPGSGAEPNGRGDHLLLGPP-LSITAAEVDGLLALLAGALEDV 428 (430)
T ss_dssp TEECC-----------CEEEECCC-TTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEecccccCCCCCCEEEEECC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 97543220 11 13568998533 3467999999999999987664
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=92.56 E-value=3.8 Score=44.86 Aligned_cols=52 Identities=13% Similarity=0.095 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCcEEEEece--eCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13453 216 NKAVYDRIIARKVIYIVKGS--FQDRLFMRFAICSSQTEESDVQLGWNEIRTATE 268 (764)
Q Consensus 216 n~~L~~~L~~~G~~~vs~t~--l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~ 268 (764)
..++.+.|.++|.++..... ..+..++|++. ...+++++++.+++.|+++.+
T Consensus 397 ~~~~~~~l~~~Gv~~~~~~~~~~~~~~~iRi~~-~~~~t~e~i~~~l~~l~~~l~ 450 (452)
T 3n5m_A 397 IASVVNACKEKGLIIGRNGMTTAGYNNILTLAP-PLVISSEEIAFVIGTLKTAME 450 (452)
T ss_dssp HHHHHHHHHHTTEECEECTTSSTTCCCEEEECC-CTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCcEEeecCcccCCCCCEEEEEC-CCCCCHHHHHHHHHHHHHHHH
Confidence 35788899999975543321 11256899853 344689999999999987753
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.75 E-value=3.2 Score=46.39 Aligned_cols=206 Identities=16% Similarity=0.071 Sum_probs=119.8
Q ss_pred EEecCC-CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchh---hhc--CCCceecccc------------
Q psy13453 39 RLSGLP-DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNA---PVS--NGPLKVGGVL------------ 100 (764)
Q Consensus 39 ~~Vpvd-~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~---ia~--~~wlHVDa~l------------ 100 (764)
+.-++| +++.+|.++|++...+. +|=+| .+|...+=-.-|+.+ |++ +..+.+|.++
T Consensus 179 ~~Y~vd~~t~~IDyd~~~~~A~~~-----kPklI-i~G~SaY~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~ps 252 (490)
T 3ou5_A 179 MPYKLNPKTGLIDYNQLALTARLF-----RPRLI-IAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPS 252 (490)
T ss_dssp -CBCEETTTTEECHHHHHHHHHHH-----CCSEE-EECCSSCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCC
T ss_pred cccccCCCCCcccHHHHHHHHhhc-----CCCeE-EECCccCccccCHHHHHHHHhhcccEEEechhhhhhhhcccccCC
Confidence 445666 67899999999999986 35331 223333333334444 555 7888888854
Q ss_pred -----------ccc-----cceeeeecCCCcc------c---ccccccccc-CCcccCCCCcccHHHH-HHHHHHccHHH
Q psy13453 101 -----------RRV-----YSSCLVPRGQKSL------R---TTVLFHFLF-QHWQIPLGRRFRALKL-WMTLRSYGLKG 153 (764)
Q Consensus 101 -----------~~~-----y~s~ll~rd~~~l------~---~~~s~~~d~-~d~tle~SRr~~ALkl-WatL~~lG~eG 153 (764)
+|+ -++++|+++...- . ..+.-.+|. --+++|++=....++. -.+++.--...
T Consensus 253 P~~~ADvVTtTTHKTLrGPrGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~ 332 (490)
T 3ou5_A 253 PFKHADIVTTTTHKTLRGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPM 332 (490)
T ss_dssp GGGTCSEEEEESSSTTCSCSCEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHH
T ss_pred ccccceEEeccccccccCCCceEEEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHh
Confidence 121 2356776653100 0 001111121 1357888875555533 33455555667
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEeCC-CCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEE
Q psy13453 154 LQAYLRKHISLAKKFADLVEQDDRFELVCP-PSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIV 232 (764)
Q Consensus 154 y~~~i~~~i~lA~~l~~~I~~~p~~ell~~-P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs 232 (764)
|++..++.+++|+.|++.+.+ .||.++.. .+..+|..-..|.+..+ .+..+.|.+.|. .++
T Consensus 333 fk~Ya~qVv~NAkaLA~~L~~-~G~~vvsGgTdnHlvLvDl~~~g~tG----------------~~ae~~Le~agI-tvN 394 (490)
T 3ou5_A 333 FREYSLQVLKNARAMADALLE-RGYSLVSGGTDNHLVLVDLRPKGLDG----------------ARAERVLELVSI-TAN 394 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TTCEEGGGSCSSSEEEEECGGGTCCH----------------HHHHHHHHHTTE-ECE
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCCeeecCCCCceEEEEeccccCCCH----------------HHHHHHHHHcCc-EEC
Confidence 899999999999999999998 49999853 44556666444322111 344555666664 344
Q ss_pred eceeCC------eeEEEEec---cCCCCCHHHHHHHHHHHHHHHH
Q psy13453 233 KGSFQD------RLFMRFAI---CSSQTEESDVQLGWNEIRTATE 268 (764)
Q Consensus 233 ~t~l~g------~~~LRi~v---~np~Tt~e~i~~~l~~l~~~~~ 268 (764)
.+.+.+ +..||+-. +.--..+++++++-+.|.++..
T Consensus 395 kN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 395 KNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp EECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 444432 35799843 2223456888888877776653
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=91.22 E-value=1 Score=50.04 Aligned_cols=108 Identities=8% Similarity=-0.049 Sum_probs=63.1
Q ss_pred cccHHHHHHHHH---HccHHHHHHHHHHHHHHHHHHHHHHhcC---CCeEEeCCCCceeEEEEeeccccccccccccCcc
Q psy13453 136 RFRALKLWMTLR---SYGLKGLQAYLRKHISLAKKFADLVEQD---DRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTIS 209 (764)
Q Consensus 136 r~~ALklWatL~---~lG~eGy~~~i~~~i~lA~~l~~~I~~~---p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~ 209 (764)
....+.+.+++. .+-.+ +..++..++.+++.+.|++. +.+.-+ .+.-+++.|....
T Consensus 340 ~~n~~a~aaa~aaL~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~v~~v-r~~G~~~~i~l~~-------------- 401 (457)
T 3tfu_A 340 MANPLACAVSVASVELLLGQ---DWRTRITELAAGLTAGLDTARALPAVTDV-RVCGAIGVIECDR-------------- 401 (457)
T ss_dssp TTCHHHHHHHHHHHHHHHTS---CHHHHHHHHHHHHHHHHGGGGGSTTEEEE-EECSSCEEEEESS--------------
T ss_pred CcCHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHhcCCCeeee-ecCCeEEEEEECC--------------
Confidence 445555544444 33333 44556666777888888764 444322 1223345554421
Q ss_pred CCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 210 FGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 210 ~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
..+ ..++.++|.++|.+... . ..++|++ ....+++++++++++.|+++.+++
T Consensus 402 -~~~--~~~~~~~l~~~Gv~v~~---~--~~~lRi~-p~~~~t~eei~~~l~~L~~~l~~~ 453 (457)
T 3tfu_A 402 -PVD--LAVATPAALDRGVWLRP---F--RNLVYAM-PPYICTPAEITQITSAMVEVARLV 453 (457)
T ss_dssp -CCC--HHHHHHHHHHTTEECCC---B--TTEEEEC-CCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred -ccc--HHHHHHHHHHCCeEEEe---c--CCEEEEE-CCCCCCHHHHHHHHHHHHHHHHHh
Confidence 111 25688889999964321 1 2578973 233458999999999999887654
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=91.11 E-value=5.6 Score=43.71 Aligned_cols=116 Identities=18% Similarity=0.156 Sum_probs=63.7
Q ss_pred cccHHHHHHHHHHc---cHHHHHHHHHHHHHHHHHHHHHHh----cCCCeEEeCCCCceeEEEEeeccccccccccccCc
Q psy13453 136 RFRALKLWMTLRSY---GLKGLQAYLRKHISLAKKFADLVE----QDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTI 208 (764)
Q Consensus 136 r~~ALklWatL~~l---G~eGy~~~i~~~i~lA~~l~~~I~----~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~ 208 (764)
....+..++++..+ -.++ ++++.-++.+++.+.|+ +++.+..+ .+.-..+.|.+.....
T Consensus 327 ~~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~G~~~~~~~~~~~~---------- 392 (451)
T 3oks_A 327 GGNPIACAAALATIETIESEG---LVARAQQIEKIMKDRLGRLQAEDDRIGDV-RGRGAMIAMELVKAGT---------- 392 (451)
T ss_dssp SSCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEEBSTTS----------
T ss_pred CCCHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHhhCCCeEEE-EEeeEEEEEEEecCcc----------
Confidence 45556555554443 2333 44444555556555554 34544332 2223345554432000
Q ss_pred cCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13453 209 SFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATE 268 (764)
Q Consensus 209 ~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~ 268 (764)
.+.......++.++|.++|.++..... +..++|++. +...++++++++++.|+++.+
T Consensus 393 ~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~~-~~~~t~e~i~~~l~~l~~~l~ 449 (451)
T 3oks_A 393 TEPDADLTKALCAGAHAAGVIVLSCGT--YGNVVRFLP-PLSIGDDLLNEGLDVLEEVLR 449 (451)
T ss_dssp CCBCHHHHHHHHHHHHHTTEECEEECT--TSCEEEECC-CTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCcEEecCCC--CCCEEEEEC-CCCCCHHHHHHHHHHHHHHHh
Confidence 001122346788999999976544322 235799853 344579999999999988753
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=90.92 E-value=0.41 Score=52.29 Aligned_cols=202 Identities=7% Similarity=-0.055 Sum_probs=101.3
Q ss_pred cHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccC----chhhhc-----CCCceecccccccc-c--------e----
Q psy13453 50 AYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQS----LNAPVS-----NGPLKVGGVLRRVY-S--------S---- 106 (764)
Q Consensus 50 D~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDp----i~~ia~-----~~wlHVDa~l~~~y-~--------s---- 106 (764)
|+++|+++|++... .+.+ +..-...+.|.+-| ++++.+ ++++++|.+..... + +
T Consensus 186 d~~~le~~l~~~~~---~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~~~~d 262 (429)
T 3k28_A 186 DLESVKYAFEQFGD---DIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVAYNCGQGYYGVTPD 262 (429)
T ss_dssp CHHHHHHHHHHHGG---GEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTSSTTHHHHHHTCCCS
T ss_pred CHHHHHHHHHhCCC---CEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchHHHHhCCCCc
Confidence 89999999986421 2333 44444445677777 676665 89999998653111 0 0
Q ss_pred eeeecCCCccccccccc--------cccC-C---cccCCCCcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13453 107 CLVPRGQKSLRTTVLFH--------FLFQ-H---WQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQ 174 (764)
Q Consensus 107 ~ll~rd~~~l~~~~s~~--------~d~~-d---~tle~SRr~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~ 174 (764)
++.+ .+.+-.-+... .+.. . ....++-....+.+.+++..+-.-. .+++++..+..+++.+.|++
T Consensus 263 i~t~--sK~~~~G~~iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~-~~~~~~~~~~~~~l~~~L~~ 339 (429)
T 3k28_A 263 LTCL--GKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT-PESYVEFERKAEMLEAGLRK 339 (429)
T ss_dssp EEEE--CGGGGTTSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHHH
T ss_pred eehh--hhhhcCCCCeEEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 1111 11111000000 0111 0 1122233455555555444332101 56667777777788777765
Q ss_pred C----CCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCC
Q psy13453 175 D----DRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQ 250 (764)
Q Consensus 175 ~----p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~ 250 (764)
. +.... .++.-+.+.|.+..+...... ...........++.++|.++|.++... +...+|++ ..
T Consensus 340 ~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~Gv~v~~~----~~~~~r~~---~~ 407 (429)
T 3k28_A 340 AAEKHGIPHH-INRAGSMIGIFFTDEPVINYD----AAKSSNLQFFAAYYREMVEQGVFLPPS----QFEGLFLS---TV 407 (429)
T ss_dssp HHHHTTCCCE-EEEETTEEEEESSSSCCCSHH----HHTTSCHHHHHHHHHHHHHTTEECCSS----TTSCBCCC---TT
T ss_pred HHhhCCCCEE-EEeeccEEEEEEecCCccccc----ccccccHHHHHHHHHHHHHCCeEEecC----CCCCEEEE---CC
Confidence 3 32211 122333455544311100000 000011223467888999999643221 22346663 46
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q psy13453 251 TEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 251 Tt~e~i~~~l~~l~~~~~~ 269 (764)
+++++++++++.|+++.++
T Consensus 408 ~t~e~i~~~l~~l~~~l~~ 426 (429)
T 3k28_A 408 HSDADIEATIAAAEIAMSK 426 (429)
T ss_dssp CCHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 7899999999999987654
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=89.80 E-value=3.3 Score=44.99 Aligned_cols=212 Identities=8% Similarity=-0.027 Sum_probs=103.2
Q ss_pred CeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEE-EeeCCcccccccC----chhhhc-----CCCceeccccccc-cc
Q psy13453 37 QVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCS-GYCGRTLHQDIQS----LNAPVS-----NGPLKVGGVLRRV-YS 105 (764)
Q Consensus 37 ~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~V-atAGTT~~G~iDp----i~~ia~-----~~wlHVDa~l~~~-y~ 105 (764)
.++.+|.+ |+++|+++|++.. ..+.+| .+--..++|.+-| ++++.+ ++++.+|...... ++
T Consensus 181 ~~~~~~~~-----d~~~le~~l~~~~---~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g 252 (434)
T 2epj_A 181 LTLVTPYN-----DVEALERVFAEYG---DRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRLG 252 (434)
T ss_dssp TEEEEETT-----CHHHHHHHHHHHG---GGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTTTSS
T ss_pred ceEecCCC-----CHHHHHHHHHhCC---CCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhceeCC
Confidence 35666642 8999999998631 123343 4433345798766 777665 8899999864311 11
Q ss_pred e---e-e--eecCCCcccccccc----c--------cccCCc---ccC-CCCcccHHHH---HHHHHHccHHHHHHHHHH
Q psy13453 106 S---C-L--VPRGQKSLRTTVLF----H--------FLFQHW---QIP-LGRRFRALKL---WMTLRSYGLKGLQAYLRK 160 (764)
Q Consensus 106 s---~-l--l~rd~~~l~~~~s~----~--------~d~~d~---tle-~SRr~~ALkl---WatL~~lG~eGy~~~i~~ 160 (764)
. + . +..|--++...+.. . .+.... ... ++=....+.+ .++|..+-. .++.++
T Consensus 253 ~~~~~~~~~~~~di~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~---~~~~~~ 329 (434)
T 2epj_A 253 LEGAQGYFNIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEE---EPVYSV 329 (434)
T ss_dssp TTHHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHH---SCHHHH
T ss_pred cchhhHHhCCCCCeeeecchhcCCcceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHh---cCHHHH
Confidence 0 0 0 00000000011100 0 011110 011 1113344433 344444433 345666
Q ss_pred HHHHHHHHHHHHhcCC---CeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEeceeC
Q psy13453 161 HISLAKKFADLVEQDD---RFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQ 237 (764)
Q Consensus 161 ~i~lA~~l~~~I~~~p---~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~ 237 (764)
.-++.+++.+.|++.. ++.....+.-+++.|.+.......... ..........++.++|.++|..+... .
T Consensus 330 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~Gv~v~~~-~-- 402 (434)
T 2epj_A 330 SREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQ----ARKADKKFYVKLHEEMLRRGVFIAPS-N-- 402 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHH----HTTSCHHHHHHHHHHHHHTTEECCSS-T--
T ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchh----ccccCHHHHHHHHHHHHHCCeEEecc-C--
Confidence 6777888888877641 232112233345566553100000000 00001122367888898888643221 1
Q ss_pred CeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 238 DRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 238 g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
. ..+|+ +..+++++++.+++.|+++.+++
T Consensus 403 ~-~~~~~---~~~~t~e~i~~~l~~l~~~l~~~ 431 (434)
T 2epj_A 403 L-EAVFT---GLPHQGEALEIAVEGLRSSLKTV 431 (434)
T ss_dssp T-SCEEC---CTTCSHHHHHHHHHHHHHHHHHH
T ss_pred C-CcEEE---eccCCHHHHHHHHHHHHHHHHHH
Confidence 1 12443 35678999999999999987665
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=89.45 E-value=1.6 Score=47.98 Aligned_cols=90 Identities=11% Similarity=0.146 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEE--eC-----------CCCceeEEE-EeeccccccccccccCccCCccHHHHHHHH
Q psy13453 156 AYLRKHISLAKKFADLVEQDDRFEL--VC-----------PPSMGLVCF-RLKVRFWDKLDNLFGTISFGDNDLNKAVYD 221 (764)
Q Consensus 156 ~~i~~~i~lA~~l~~~I~~~p~~el--l~-----------~P~l~iV~F-ry~P~~~~~~~~~~~~~~~~~d~~n~~L~~ 221 (764)
+..++..+..+++.+.|++.+++++ +. .|+-...+| +.. . + ..++.+
T Consensus 317 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~-~----------------~--~~~~~~ 377 (427)
T 2hox_A 317 FGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCE-W----------------E--EDKDCY 377 (427)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEEC-S----------------G--GGCSHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECC-C----------------c--HHHHHH
Confidence 3445666778899999999889886 22 122233333 321 0 0 123455
Q ss_pred HHH-hcCcEEEEeceeC-CeeEEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13453 222 RII-ARKVIYIVKGSFQ-DRLFMRFAICSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 222 ~L~-~~G~~~vs~t~l~-g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~ 267 (764)
+|. +.|..+....... +..++|+++.+ ++++++..++.|.++.
T Consensus 378 ~ll~~~gI~v~pg~~f~~~~~~~Ris~~~---~~e~l~~~l~~l~~~~ 422 (427)
T 2hox_A 378 QTFQNGRINTQNGVGFEASSRYVRLSLIK---TQDDFDQLMYYLKDMV 422 (427)
T ss_dssp HHHHHTTEECEEGGGGTSCTTEEEEECSS---CHHHHHHHHHHHHHHH
T ss_pred HHHHHCCEEEcCCCccCCCCCEEEEEecC---CHHHHHHHHHHHHHHH
Confidence 554 6787655443332 35789999985 6788998888887764
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=88.73 E-value=11 Score=41.30 Aligned_cols=54 Identities=11% Similarity=0.140 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy13453 215 LNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVL 271 (764)
Q Consensus 215 ~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~ 271 (764)
...++.++|.++|.++..... +..++|+++ +...++++++++++.|+++.+++.
T Consensus 397 ~~~~~~~~l~~~Gv~v~~~~~--~~~~iRi~~-~~~~t~e~i~~~l~~l~~~l~~~~ 450 (453)
T 4ffc_A 397 LTKSIAAEALSQGVLILTCGT--FGNVIRLLP-PLVIGDDLLDEGITALSDIIRAKA 450 (453)
T ss_dssp HHHHHHHHHHHTTEECCEECT--TSCEEEECC-CTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCEEecCCC--CCCEEEEEC-CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 346788999999975543322 236899853 334579999999999999887764
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=88.32 E-value=3.7 Score=44.40 Aligned_cols=201 Identities=8% Similarity=-0.085 Sum_probs=96.7
Q ss_pred cHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccC----chhhhc-----CCCceecccccccc-c--------e----
Q psy13453 50 AYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQS----LNAPVS-----NGPLKVGGVLRRVY-S--------S---- 106 (764)
Q Consensus 50 D~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDp----i~~ia~-----~~wlHVDa~l~~~y-~--------s---- 106 (764)
|+++|+++|++.. ..+.+ +..-...+.|.+-| ++++.+ ++++++|.+....+ + +
T Consensus 185 d~~~le~~l~~~~---~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~~~~d 261 (427)
T 3fq8_A 185 DLEAVKALFAENP---GEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAYGGVQEKFGVTPD 261 (427)
T ss_dssp CHHHHHHHHHHST---TTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTHHHHHTTCCCS
T ss_pred CHHHHHHHHHhCC---CCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchhhHhcCCCCC
Confidence 8999999998632 12344 45555556788877 777665 88999998653111 0 0
Q ss_pred eeeecCCCcccccccccc--------ccCC----cccCCCCcccHHHHHHHH---HHccHHHHHHHHHHHHHHHHHHHHH
Q psy13453 107 CLVPRGQKSLRTTVLFHF--------LFQH----WQIPLGRRFRALKLWMTL---RSYGLKGLQAYLRKHISLAKKFADL 171 (764)
Q Consensus 107 ~ll~rd~~~l~~~~s~~~--------d~~d----~tle~SRr~~ALklWatL---~~lG~eGy~~~i~~~i~lA~~l~~~ 171 (764)
++.+ .+.+..-+...+ +... ....++=....+.+.+++ ..+..++ ++++..++.+++.+.
T Consensus 262 i~t~--sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~---~~~~~~~~~~~~~~~ 336 (427)
T 3fq8_A 262 LTTL--GKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPG---TYEYLDQITKRLSDG 336 (427)
T ss_dssp EEEE--CGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTT---HHHHHHHHHHHHHHH
T ss_pred hhhh--hhhhhCCcceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHH
Confidence 0000 011111000000 1100 011112233455544444 4333444 445555566666666
Q ss_pred HhcCC---CeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccC
Q psy13453 172 VEQDD---RFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICS 248 (764)
Q Consensus 172 I~~~p---~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~n 248 (764)
+++.. ++....+..-..+.|.+......... ...........++.++|.++|.++.... .. |++ .+
T Consensus 337 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~Gi~v~~~~----~~--r~~-~~ 405 (427)
T 3fq8_A 337 LLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYE----DAKKSDLQKFSRFHRGMLEQGIYLAPSQ----FE--AGF-TS 405 (427)
T ss_dssp HHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHH----HHTTSCHHHHHHHHHHHHHTTEECCSST----TS--CEE-CC
T ss_pred HHHHHHhCCCCeEEEEeeeEEEEEEecCcccccc----ccccccHHHHHHHHHHHHHCCcEEecCC----CC--CEE-ee
Confidence 65421 11111112233455544321100000 0000112234678889999997433221 11 432 34
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q psy13453 249 SQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 249 p~Tt~e~i~~~l~~l~~~~~~ 269 (764)
..+++++++++++.|+++.++
T Consensus 406 ~~~t~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 406 LAHTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp TTCCHHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHHh
Confidence 567899999999999887653
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=88.14 E-value=8.2 Score=42.10 Aligned_cols=113 Identities=8% Similarity=-0.074 Sum_probs=61.7
Q ss_pred HHHHHH-ccHHHHHHHHHHHHHHHHHHHHHHhcCC---CeEEeCCCCceeEEEEeec-----c-ccccccccccCccCCc
Q psy13453 143 WMTLRS-YGLKGLQAYLRKHISLAKKFADLVEQDD---RFELVCPPSMGLVCFRLKV-----R-FWDKLDNLFGTISFGD 212 (764)
Q Consensus 143 WatL~~-lG~eGy~~~i~~~i~lA~~l~~~I~~~p---~~ell~~P~l~iV~Fry~P-----~-~~~~~~~~~~~~~~~~ 212 (764)
.++|.. + .+ ++.++.-++.+++.+.+++.. ++....++.-+++.|.+.+ . ....... ....
T Consensus 315 ~aal~~~~-~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~-----~~~~ 385 (453)
T 2cy8_A 315 IAAIDTIL-ED---DVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAE-----VARP 385 (453)
T ss_dssp HHHHHHHH-HT---THHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTC-----SCCC
T ss_pred HHHHHHHh-hh---hHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccc-----cccc
Confidence 445555 4 33 345566667777777776531 2222223444456665531 0 0000000 0001
Q ss_pred c-HHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHcc
Q psy13453 213 N-DLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLRG 273 (764)
Q Consensus 213 d-~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~~ 273 (764)
+ ....++.++|.++|.+. . .. + . +|+ +...++++++++++.|+++.+++.+.
T Consensus 386 ~~~~~~~l~~~l~~~Gv~v--~-~~-~-~-~~l---~~~~t~~~i~~~l~~l~~~l~~~~~~ 438 (453)
T 2cy8_A 386 DVKMIAAMRMALILEGVDI--G-GR-G-S-VFL---SAQHEREHVEHLVTTFDRVLDRLADE 438 (453)
T ss_dssp CHHHHHHHHHHHHHTTEEC--B-TT-T-E-EEC---CTTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHCCeEE--e-CC-C-C-EEe---eccCCHHHHHHHHHHHHHHHHHHHhC
Confidence 1 22357888898888754 1 11 2 2 443 46778999999999999998877553
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=87.74 E-value=8 Score=42.42 Aligned_cols=53 Identities=11% Similarity=0.011 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHc
Q psy13453 214 DLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLR 272 (764)
Q Consensus 214 ~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~ 272 (764)
....++.++|.++|.++... + .++|++ .+..+++++++++++.|+++.+++..
T Consensus 399 ~~~~~~~~~l~~~Gv~v~~~----g-~~iRi~-~~~~~t~e~i~~~l~~l~~~l~~~~~ 451 (459)
T 4a6r_A 399 EIGTLCRDIFFRNNLIMRAC----G-DHIVSA-PPLVMTRAEVDEMLAVAERCLEEFEQ 451 (459)
T ss_dssp HHHHHHHHHHHHTTEECEEE----T-TEEEEC-CCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCeEEecC----C-CEEEEE-CCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999755443 2 689984 33456899999999999998877653
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=84.43 E-value=5.8 Score=42.91 Aligned_cols=46 Identities=15% Similarity=0.042 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13453 216 NKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATE 268 (764)
Q Consensus 216 n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~ 268 (764)
..++.++|.++|.++... +...+|+ +..+++++++++++.|+++.+
T Consensus 382 ~~~~~~~l~~~Gi~v~~~----~~~~~~~---~~~~t~e~i~~~l~~l~~~l~ 427 (429)
T 4e77_A 382 FKRFFHLMLEEGVYLAPS----AFEAGFM---SLAHSNEDIQKTVNAARRCFA 427 (429)
T ss_dssp HHHHHHHHHHTTEECCSS----TTSCEEC---CTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCeEEeec----CCCCEEE---eccCCHHHHHHHHHHHHHHHH
Confidence 367889999999643222 1122443 356789999999999988753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 764 | ||||
| d1js3a_ | 476 | c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) | 1e-97 | |
| d1js3a_ | 476 | c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) | 3e-33 | |
| d1pmma_ | 450 | c.67.1.6 (A:) Glutamate decarboxylase beta, GadB { | 5e-33 | |
| d2z67a1 | 434 | c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase ( | 2e-25 | |
| d3bc8a1 | 445 | c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase | 3e-24 |
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 309 bits (791), Expect = 1e-97
Identities = 174/312 (55%), Positives = 229/312 (73%)
Query: 453 EEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTV 512
+FR GK +D++ADY++ I R V P V+PGYL L+P P+E + + I++D+ +
Sbjct: 4 SDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKI 63
Query: 513 IMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLG 572
IMPG+THW SP F AYFPT SSYP+++ DML GA G IGFSW +SPACTELE ++M+WLG
Sbjct: 64 IMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLG 123
Query: 573 KALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKL 632
K L LPE FL G GGG+IQ +ASEATLV++L A+ K++ Q+ +P LT+ + KL
Sbjct: 124 KMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKL 183
Query: 633 VAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATL 692
VAY SDQ++SSVE++ +IG V ++ + SD +R AL A++ D A GLIP ++ATL
Sbjct: 184 VAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATL 243
Query: 693 GTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHK 752
GTT C+FDNL E+GPIC E +IWLHVDAAYAGSA + PE+ HL G+E+ DSF+FN HK
Sbjct: 244 GTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHK 303
Query: 753 WLLVNFDCSAMW 764
WLLVNFDCSAMW
Sbjct: 304 WLLVNFDCSAMW 315
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 131 bits (331), Expect = 3e-33
Identities = 63/146 (43%), Positives = 90/146 (61%), Gaps = 16/146 (10%)
Query: 126 FQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS 185
++HWQ+PLGRRFR+LK+W R YG+KGLQAY+RKH+ L+ +F V QD RFE+ +
Sbjct: 346 YRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVT 405
Query: 186 MGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFA 245
+GLVCFRLK G + LN+A+ +RI + + I++V + + +RFA
Sbjct: 406 LGLVCFRLK----------------GSDGLNEALLERINSARKIHLVPCRLRGQFVLRFA 449
Query: 246 ICSSQTEESDVQLGWNEIRTATEEVL 271
ICS + E V+L W IR E+L
Sbjct: 450 ICSRKVESGHVRLAWEHIRGLAAELL 475
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} Length = 450 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Score = 130 bits (328), Expect = 5e-33
Identities = 43/316 (13%), Positives = 93/316 (29%), Gaps = 42/316 (13%)
Query: 460 KAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEG---EDWRHIMRDMNTVIMPG 516
K D ++ +D+ + ++ P + I+ D + + G
Sbjct: 2 KQVTDLRSELLDSRFGAKSISTIAESK-------RFPLHEMRDDVAFQIIND--ELYLDG 52
Query: 517 ITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALG 576
F + V ++ + P +++ +N +
Sbjct: 53 NARQNLATF-----CQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWH 107
Query: 577 LPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYT 636
P G G +SEA ++ + K + W+ + + + +
Sbjct: 108 APAPKN----GQAVGTNTIGSSEACMLGGMAMKWR----WRKRMEAAGKPTDK---PNLV 156
Query: 637 SDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTT 695
K A DV +R++ + ++ A E+ ++ T G T
Sbjct: 157 CGPVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDEN------TIGVVPTFGVT 210
Query: 696 GTCAFDNLE------ELGPICQEYNIWLHVDAAYAGSAL-LLPEYAHLKRGLEYVDSFDF 748
T ++ + + +I +H+DAA G + L V S
Sbjct: 211 YTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISA 270
Query: 749 NTHKWLLVNFDCSAMW 764
+ HK+ L C +
Sbjct: 271 SGHKFGLAPLGCGWVI 286
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Score = 107 bits (268), Expect = 2e-25
Identities = 47/321 (14%), Positives = 104/321 (32%), Gaps = 51/321 (15%)
Query: 453 EEFREFGKAAIDFIADYVDNIRERPVLPS--VEPGYLASLVPGEMPEEGEDWRHIM---- 506
+ + G+ ++ ++++ +P ++ + + + + +
Sbjct: 12 KNMEKRGELVLNEYLKEIEDVFNHRKIPENGIDDEKIKLFLKFLSMMDTDKDPKSVRIGE 71
Query: 507 RDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVL 566
R+ S + +G+ + D A G L++
Sbjct: 72 REA-RTYSKIHEELSSGFCHGIGRSGN-----LVDPQPKASGASIMYALTNK-------- 117
Query: 567 VMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTEN 626
++ K LGL I ++ ++ L A RK
Sbjct: 118 ILESFFKQLGLNV----------HAIATPISTGMSISLCLSAARKK-------------- 153
Query: 627 DIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLR---SDDNGVLRGDALLTAVKEDLAKGL 683
V S+ S K+ + +R + D + + + A+K+++ G
Sbjct: 154 --YGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGN 211
Query: 684 IPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYV 743
PC +++TL D++ E+ IC+ Y+I ++ AYA E K V
Sbjct: 212 RPC-VLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLK-KAFKYRV 269
Query: 744 DSFDFNTHKWLLVNFDCSAMW 764
D+ ++ K LL ++
Sbjct: 270 DAVVSSSDKNLLTPIGGGLVY 290
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 104 bits (259), Expect = 3e-24
Identities = 44/283 (15%), Positives = 84/283 (29%), Gaps = 36/283 (12%)
Query: 493 GEMPEEGEDWRHIMRDMNTVIMPGITHWQS--------PQFNAYFPTGSSYPSIVGDMLS 544
G+ PE+G D + ++ + + ++ + + Y I G S
Sbjct: 17 GKCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRS 76
Query: 545 GAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVS 604
G + S ++ ++ + K G+ + A+ +L
Sbjct: 77 GDISAVQPKAAGSSLLNKITNSLVLNVIKLAGVHSV--------ASCFVVPMATGMSLTL 128
Query: 605 ILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAI---IGDVPVRQLRSD 661
+ R H + K S KS + V + +
Sbjct: 129 CFLTLR----HKRPKAK-----------YIIWPRIDQKSCFKSMVTAGFEPVVIENVLEG 173
Query: 662 DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 721
D A+ ++E CL +T D LEEL IC Y+I V+
Sbjct: 174 DELRTDLKAVEAKIQEL--GPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNN 231
Query: 722 AYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764
AY + + +D+F + K +V + +
Sbjct: 232 AYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIA 274
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 764 | |||
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 100.0 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 100.0 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 100.0 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.98 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.96 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.93 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.77 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.77 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.74 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.74 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.72 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.71 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.71 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.66 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.6 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.52 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.51 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.42 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.3 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.28 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.27 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.26 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.23 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.17 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.15 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.06 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.05 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.01 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.0 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 98.97 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 98.97 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 98.96 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 98.95 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 98.92 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 98.91 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 98.84 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 98.78 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 98.77 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 98.76 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 98.74 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 98.74 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 98.72 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 98.71 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 98.69 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 98.69 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 98.67 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 98.67 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 98.61 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 98.6 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 98.59 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 98.59 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 98.58 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 98.54 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 98.53 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 98.53 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 98.51 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 98.5 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 98.5 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 98.49 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 98.47 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 98.43 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 98.41 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 98.34 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 98.31 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 98.3 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 98.25 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 98.23 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 98.18 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 98.13 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 98.13 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 98.12 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 98.06 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 98.03 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 98.02 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 97.93 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 97.87 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 97.86 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 97.86 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 97.86 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 97.82 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 97.72 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 97.66 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 97.66 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 97.66 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 97.63 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 97.63 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 97.6 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 97.6 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 97.57 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 97.46 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 97.46 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 97.45 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 97.45 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 97.41 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 97.38 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 97.36 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 97.16 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 97.13 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 97.11 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 97.08 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 97.06 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 96.94 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 96.92 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 96.83 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 96.74 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 96.73 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 96.67 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 96.63 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 96.62 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 96.61 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 96.47 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 96.37 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 96.3 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 96.3 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 96.18 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 96.04 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 96.01 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 95.85 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 95.85 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 95.77 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 95.48 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 95.47 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 95.45 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 95.37 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 95.36 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 95.36 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 95.25 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 95.23 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 95.16 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 95.02 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 94.66 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 94.58 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 94.21 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 94.05 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 93.8 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 92.97 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 92.05 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 91.98 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 90.43 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 90.22 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 89.8 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 89.2 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 88.22 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 87.58 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 86.07 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 80.71 |
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=6.7e-67 Score=592.24 Aligned_cols=315 Identities=55% Similarity=1.022 Sum_probs=300.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCcccccc
Q psy13453 450 PPNEEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPQFNAYF 529 (764)
Q Consensus 450 ~~~~~~~~~~~~~v~~i~~y~~~~~~~~v~~~~~p~~l~~~l~~~lP~~g~~~~~il~~l~~~i~~~~~~~~~P~~~~~~ 529 (764)
||+|+||+.+++++|.+.+|+++++++||.|...|+++++.++..+|++|++++++++++.+.+.+++++|+||+||+|+
T Consensus 1 m~~~~fr~~~~~~~d~i~d~~~~~~~~~v~~~~~p~~l~~~~~~~~P~~g~~~~~~l~~~~~~i~~~~~~~~~P~f~~~~ 80 (476)
T d1js3a_ 1 MNASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKIIMPGVTHWHSPYFFAYF 80 (476)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTGGGSCSSCCCCTTCSGGGSCSSCCSSCCCHHHHHHHHHHTTGGGCCCTTSTTBCSSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChHHHHHhcCcccCcCCCCHHHHHHHHHHHHhCCCCCCCCCCeeEeC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHH
Q psy13453 530 PTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAK 609 (764)
Q Consensus 530 ~~~~~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR 609 (764)
++++++++++|+++++.+|+|+..|+.||++++||+++++||++++|+|++|.......++|+||+|||+||++|+++||
T Consensus 81 ~~~~~~~~~l~~~~~~~~n~n~~~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR 160 (476)
T d1js3a_ 81 PTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAAR 160 (476)
T ss_dssp CCCCCHHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhcccccchhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999877656667899999999999999999999
Q ss_pred HHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEE
Q psy13453 610 RKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLI 689 (764)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~Vv 689 (764)
++++++.+..+.++.+.+..+++++|+|+++|||+.|||.++|++++.||+|++|+||+++|+++|++++++|..|++||
T Consensus 161 ~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~Si~ka~~~lGl~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~Vv 240 (476)
T d1js3a_ 161 TKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVV 240 (476)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHhhcccccCcccccccCceEEEecccccHHHHHHHHhcCceEEEeccCCCCCcCHHHHHHHHHHHHhcCCCcEEEe
Confidence 99887755444444444455789999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 690 ATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 690 ataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
+|+|||.+|+||||++|++||++||+||||||||||+++++++++++++|+++||||++|+|||+++|++||+++
T Consensus 241 ataGtt~~G~iDpl~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~g~~l 315 (476)
T d1js3a_ 241 ATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMW 315 (476)
T ss_dssp EEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEE
T ss_pred ecCCCccceeeccHHHHHHHHHhcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCCcceeec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999985
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=2.5e-46 Score=423.12 Aligned_cols=243 Identities=33% Similarity=0.524 Sum_probs=222.9
Q ss_pred cccc-ccccCCcceeeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccC
Q psy13453 7 IPKL-AYPSETLSLLIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQS 84 (764)
Q Consensus 7 ~~~~-~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDp 84 (764)
.|++ .|+||+ .|||+.|||+++|++. +.||+|++++||+++|+++|++++++|..|++ |||||||.+|+|||
T Consensus 180 ~~~~vv~~s~~---~H~Si~ka~~~lGl~~---~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDp 253 (476)
T d1js3a_ 180 LEKLVAYASDQ---AHSSVERAGLIGGVKL---KAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDN 253 (476)
T ss_dssp HHHEEEEEETT---CCHHHHHHHHHHTCEE---EEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC
T ss_pred cCceEEEeccc---ccHHHHHHHHhcCceE---EEeccCCCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeecc
Confidence 3556 899999 8999999999999996 99999999999999999999999999999999 79999999999999
Q ss_pred chhhhc-----CCCceeccc-------------------------------ccccc-ceeeeecCCCccccccccc----
Q psy13453 85 LNAPVS-----NGPLKVGGV-------------------------------LRRVY-SSCLVPRGQKSLRTTVLFH---- 123 (764)
Q Consensus 85 i~~ia~-----~~wlHVDa~-------------------------------l~~~y-~s~ll~rd~~~l~~~~s~~---- 123 (764)
|++|++ ++|+||||+ ++.+| |+++++|++..+..++...
T Consensus 254 l~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~g~~l~r~~~~~~~~~~~~~~~~ 333 (476)
T d1js3a_ 254 LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYL 333 (476)
T ss_dssp HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC------
T ss_pred HHHHHHHHHhcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCCcceeecccchHHHHHHHhcChhhh
Confidence 999997 999999994 23445 5788999977665554321
Q ss_pred ----------cccCCcccCCCCcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEe
Q psy13453 124 ----------FLFQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRL 193 (764)
Q Consensus 124 ----------~d~~d~tle~SRr~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry 193 (764)
+|+.+++++|||++++||+|++|+++|++||++++++.+++|++|++.|+++|+||++.+|++++|||||
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p~l~iV~Fr~ 413 (476)
T d1js3a_ 334 KHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRL 413 (476)
T ss_dssp ------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEEEE
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCceEEEEEEc
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy13453 194 KVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVL 271 (764)
Q Consensus 194 ~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~ 271 (764)
.| .|.+|.++.++|+++|.+|++.+.++|+.+||+|++||+|+++||+.+++.|++++++|+
T Consensus 414 ~~----------------~d~~n~~l~~~l~~~G~~~~s~t~~~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~~ll 475 (476)
T d1js3a_ 414 KG----------------SDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAELL 475 (476)
T ss_dssp SS----------------CHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cC----------------ChHHHHHHHHHHHhcCCEEEeeeeECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 73 467899999999999999999999999999999999999999999999999999999986
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-41 Score=382.29 Aligned_cols=249 Identities=15% Similarity=0.136 Sum_probs=211.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHcCCCCCCCCC--ccccccCCCCChHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHH
Q psy13453 493 GEMPEEGEDWRHIMRDMNTVIMPGITHWQSP--QFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNW 570 (764)
Q Consensus 493 ~~lP~~g~~~~~il~~l~~~i~~~~~~~~~P--~~~~~~~~~~~~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~ 570 (764)
..+|++|.+.+++.+.+.+.+..+- +| ++..|+.+.. ...+++++..++|+|...++.+|++++||.++++|
T Consensus 28 ~~~p~~~~~~~~~~~~i~d~l~~dg----~~~~n~asf~~t~~--~~~~~~l~~~~~~~N~~~~~~~P~~~~lE~~~v~~ 101 (450)
T d1pmma_ 28 KRFPLHEMRDDVAFQIINDELYLDG----NARQNLATFCQTWD--DENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNM 101 (450)
T ss_dssp SSCCCSCCCHHHHHHHHHHHGGGSC----CGGGBCSCCSCCCC--CHHHHHHHHHTTTCBTTCTTTSHHHHHHHHHHHHH
T ss_pred ccCCccCCCHHHHHHHHHHHhccCC----CccccccccccCCC--CHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHH
Confidence 4689999999999999988764332 23 3455554433 34678999999999999999999999999999999
Q ss_pred HHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHh
Q psy13453 571 LGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAII 650 (764)
Q Consensus 571 la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~ 650 (764)
|++|||+|+.+ .+.++|++|+|||+||++|+++||+++.++.+..+. .....+|+|..+|+|+.|+|++
T Consensus 102 la~L~~~p~~~----~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~-------~~~~~~~~~~~~H~s~~Kaa~~ 170 (450)
T d1pmma_ 102 VADLWHAPAPK----NGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGK-------PTDKPNLVCGPVQICWHKFARY 170 (450)
T ss_dssp HHHHTTCCCCT----TSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTC-------CCSCCEEEESSCCHHHHHHHHH
T ss_pred HHHHhCCCccc----cCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCC-------CCCCceEEecccHHHHHHHHHH
Confidence 99999998753 245789999999999999999999998776544321 1233567888999999999999
Q ss_pred CCCceEEEecCC-CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHH------HhcCCEEEEeccc
Q psy13453 651 GDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPIC------QEYNIWLHVDAAY 723 (764)
Q Consensus 651 lGl~v~~Vp~d~-~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~------~~~glwLHVDaA~ 723 (764)
+|++++.||+++ +|+||+++|+++|+++ +++|++|+|||.+|++||+++|+++| +++|+|+||||||
T Consensus 171 ~gi~~~~v~~~~~~~~~d~~~L~~~i~~~------t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~ 244 (450)
T d1pmma_ 171 WDVELREIPMRPGQLFMDPKRMIEACDEN------TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAAS 244 (450)
T ss_dssp TTCEEEECCCBTTBCSCCHHHHHHHCCTT------EEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTT
T ss_pred cCCCceEeeecCCCCcCcHHHHHHHhhhC------ceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhh
Confidence 999999999985 6999999999998765 67999999999999999999999886 4579999999999
Q ss_pred ccccc-ccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 724 AGSAL-LLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 724 Gg~~l-~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
||+.+ ++++.+....|+++||||++|+||||++|+|||++|
T Consensus 245 gG~~~p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g~g~l~ 286 (450)
T d1pmma_ 245 GGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVI 286 (450)
T ss_dssp GGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEE
T ss_pred ccceeeeechhhhhhhcccceeEeecChhhccCCCCCeeEEE
Confidence 99866 566667777899999999999999999999999975
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.98 E-value=2.7e-32 Score=305.73 Aligned_cols=238 Identities=13% Similarity=0.130 Sum_probs=197.0
Q ss_pred ccccCCcceeeeeHHHHHhhcCCCCCCeEEecCCC-CCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccCchhh
Q psy13453 11 AYPSETLSLLIYESFKATHSLSGTPDQVRLSGLPD-SEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQSLNAP 88 (764)
Q Consensus 11 ~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpvd~-~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDpi~~i 88 (764)
.|.|++ .|||+.|||+++|++. +.||+++ +++||+++|+++|+++ |++ |+|+|||.+|++|||+++
T Consensus 154 ~~~~~~---~H~s~~Kaa~~~gi~~---~~v~~~~~~~~~d~~~L~~~i~~~------t~~Vv~t~gtt~tG~~dpv~~i 221 (450)
T d1pmma_ 154 NLVCGP---VQICWHKFARYWDVEL---REIPMRPGQLFMDPKRMIEACDEN------TIGVVPTFGVTYTGNYEFPQPL 221 (450)
T ss_dssp EEEESS---CCHHHHHHHHHTTCEE---EECCCBTTBCSCCHHHHHHHCCTT------EEEEECBBSCTTTCBBCCHHHH
T ss_pred eEEecc---cHHHHHHHHHHcCCCc---eEeeecCCCCcCcHHHHHHHhhhC------ceEEEeeeeeccCCCccccchh
Confidence 677777 7999999999999987 9999985 6999999999999875 556 799999999999999987
Q ss_pred hc-----------CCCceecccc---------------------------ccc-----c-ceeeeecCCCccccccccc-
Q psy13453 89 VS-----------NGPLKVGGVL---------------------------RRV-----Y-SSCLVPRGQKSLRTTVLFH- 123 (764)
Q Consensus 89 a~-----------~~wlHVDa~l---------------------------~~~-----y-~s~ll~rd~~~l~~~~s~~- 123 (764)
++ ++|+||||+. .|+ + |+++++|++..+..++...
T Consensus 222 ~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g~g~l~~r~~~~~~~~~~~~~ 301 (450)
T d1pmma_ 222 HDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNV 301 (450)
T ss_dssp HHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEE
T ss_pred hHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhhhcccceeEeecChhhccCCCCCeeEEEecChhhhhhhccccc
Confidence 64 7999999941 233 3 3789999998887776554
Q ss_pred ----cccCCcccCCCCcc-cHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCC----CCceeEEEEee
Q psy13453 124 ----FLFQHWQIPLGRRF-RALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCP----PSMGLVCFRLK 194 (764)
Q Consensus 124 ----~d~~d~tle~SRr~-~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~----P~l~iV~Fry~ 194 (764)
.++.++++++||++ .++++|++|+++|++||++++++++++|++|++.|+++++|+++.+ +.+++||||+.
T Consensus 302 ~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~~~el~~~~~p~~~l~~V~Fr~~ 381 (450)
T d1pmma_ 302 DYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLK 381 (450)
T ss_dssp EETTEEEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEEECCTTTBSSEEEEEEC
T ss_pred CcCCCCcCCCcccCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCCceEEEEEecC
Confidence 35678999999975 5568999999999999999999999999999999999999999863 56889999998
Q ss_pred ccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEe---ceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy13453 195 VRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVK---GSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVL 271 (764)
Q Consensus 195 P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~---t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~ 271 (764)
++... +.+. ..+.++|.++||.+.+. ...+...++|++ ++++++++++++|+++|+++.+++.
T Consensus 382 ~~~~~-----------~~~~--~~l~~~L~~~Gw~v~~~~~p~~~~~~~~lRvv-v~~~~t~e~~d~lv~dl~~~v~~l~ 447 (450)
T d1pmma_ 382 DGEDP-----------GYTL--YDLSERLRLRGWQVPAFTLGGEATDIVVMRIM-CRRGFEMDFAELLLEDYKASLKYLS 447 (450)
T ss_dssp TTCCC-----------SSCH--HHHHHHHHTTTCBCCEEECCTTCTTCEEEEEE-CCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcccC-----------CCCH--HHHHHHHHHcCCeeeccCcCCCcCCcEEEEEE-ccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 63211 1121 46889999999965443 345667899985 5788899999999999999999998
Q ss_pred ccC
Q psy13453 272 RGK 274 (764)
Q Consensus 272 ~~~ 274 (764)
+.|
T Consensus 448 ~~p 450 (450)
T d1pmma_ 448 DHP 450 (450)
T ss_dssp HCC
T ss_pred hCc
Confidence 764
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=6e-30 Score=284.33 Aligned_cols=242 Identities=16% Similarity=0.104 Sum_probs=185.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCccccccCCCCChHHHHHHHHHHhhcccCcccc-------------CCch
Q psy13453 493 GEMPEEGEDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWL-------------SSPA 559 (764)
Q Consensus 493 ~~lP~~g~~~~~il~~l~~~i~~~~~~~~~P~~~~~~~~~~~~~~~lad~l~~~lN~n~~~~~-------------~sp~ 559 (764)
.++|++|.+.+++++.+.+....+. ++|.++...+.....+.++++....+.+...+. .++.
T Consensus 17 ~~lP~~G~~~~~i~~~l~~~~~~d~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (445)
T d3bc8a1 17 GKCPEDGWDESTLELFLHELAVMDS-----NNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSL 91 (445)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHTBG-----GGCTTCCCCSSCCCCCSCHHHHHHTTTCCSCBCC-------CCSBHHHHH
T ss_pred CCCCcCCCCHHHHHHHHHHHHhccC-----CcccCcccccccCccccHHHHHHHHHhhccccccCcchhhhhhhhccchH
Confidence 3689999999999999888654332 334444333222222233444443332222211 1234
Q ss_pred HHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCC
Q psy13453 560 CTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQ 639 (764)
Q Consensus 560 ~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~ 639 (764)
...||.++++|+++++|++.. ..|++|+|||++++.++++|+....+ ++.+|++|..
T Consensus 92 ~~~le~~~~~~~~~l~g~~~~--------~~~~~~~~~t~~~~~~~l~a~~~~~~---------------~~~~vi~~~~ 148 (445)
T d3bc8a1 92 LNKITNSLVLNVIKLAGVHSV--------ASCFVVPMATGMSLTLCFLTLRHKRP---------------KAKYIIWPRI 148 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCTTC--------CEEEEESSCHHHHHHHHHHHHHHHCT---------------TCCEEEEECC
T ss_pred HHHHHHHHHHHHHHHhCCCcc--------cCccccccchHHHHHHHHHHHHHhCC---------------CCCEEEEcCc
Confidence 678999999999999999875 67999999998877766666544322 1346889999
Q ss_pred cchhHHHHHHhCCCceEEEe---cCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCE
Q psy13453 640 SNSSVEKSAIIGDVPVRQLR---SDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIW 716 (764)
Q Consensus 640 aH~Sv~kAa~~lGl~v~~Vp---~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glw 716 (764)
+|+|+.||+.++|+..+.|+ ++++++||+++|+++|++...++ +++|++++|+|.+|.+||+++|+++|++||+|
T Consensus 149 ~H~s~~~a~~~~g~~~~~v~~~~~~~~~~id~~~l~~~i~~~~~~~--~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~ 226 (445)
T d3bc8a1 149 DQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEH--ILCLHSTTACFAPRVPDRLEELAVICANYDIP 226 (445)
T ss_dssp CCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGGG--EEEEEEESSCCTTBCCCCHHHHHHHHHHHTCC
T ss_pred ccHHHHHHHHHcCCeeEEEEeeccCcccccCHHHHHHHHHhccccC--eEEEEEeCCCCCCeeehhHHHHHHHHHHhCCc
Confidence 99999999999999866664 57889999999999999875543 78999999999999999999999999999999
Q ss_pred EEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 717 LHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 717 LHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
+|||+|||+++.++.+......+++.+|++++|+|||+++|+++|+++
T Consensus 227 l~vD~a~~~~~~~~~~~~~~~~~~~~vd~~~~s~hK~~~~p~g~~~l~ 274 (445)
T d3bc8a1 227 HVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIA 274 (445)
T ss_dssp EEEECTTTTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEE
T ss_pred EEEEccchhhhhhccccchhccCcCCcceEEecCccccccCCCCceee
Confidence 999999999888877666555556778999999999999999999874
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.93 E-value=8.2e-26 Score=250.30 Aligned_cols=271 Identities=17% Similarity=0.172 Sum_probs=197.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCcccc
Q psy13453 448 TPPPNEEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPQFNA 527 (764)
Q Consensus 448 ~~~~~~~~~~~~~~~v~~i~~y~~~~~~~~v~~~~~p~~l~~~l~~~lP~~g~~~~~il~~l~~~i~~~~~~~~~P~~~~ 527 (764)
..|=++++++..+.+++...+.++++.+. ..+|++|.+.+++.+.+++....+...|.+..+.+
T Consensus 7 ~~~ip~~~~~~~~~~~~~~~~~~~~l~~~----------------~~lP~~g~~~~~i~~~l~~l~~~~~~~~~~~~~~g 70 (434)
T d2z67a1 7 EGLIPKNMEKRGELVLNEYLKEIEDVFNH----------------RKIPENGIDDEKIKLFLKFLSMMDTDKDPKSVRIG 70 (434)
T ss_dssp CSSSCHHHHHHHHHHHHHHTHHHHHHHHH----------------CSCCSSCCCHHHHHHHHHHHHTTBGGGCTTCEECS
T ss_pred hccCCccHHHHHHHHHHHHHHHHHHHHhc----------------ccCCCCCCCHHHHHHHHHHHHhcCccccccccccc
Confidence 34556788899999999888888775321 24688999999999999997766666666555444
Q ss_pred ccCCCCChHHHHHHHH---HHhhcccCccccCC------chHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeC-Ch
Q psy13453 528 YFPTGSSYPSIVGDML---SGAFGLIGFSWLSS------PACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQS-TA 597 (764)
Q Consensus 528 ~~~~~~~~~~~lad~l---~~~lN~n~~~~~~s------p~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTs-Gg 597 (764)
...... +..++.... ......+....... .....+|.+++.|+++++|.+.. +.+++ |+
T Consensus 71 ~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~----------~~~~~~~t 139 (434)
T d2z67a1 71 EREART-YSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQLGLNVH----------AIATPIST 139 (434)
T ss_dssp SCCCCC-SCHHHHHHTTTCTTCBSBTTBTTSCCTTBHHHHHHHHHHHHHHHHHHHHTTCCCE----------EEEESSCH
T ss_pred ceeccc-chhHHhhcccccccccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCcc----------eeecCcHH
Confidence 332221 122222211 11111111111111 24568899999999999999763 44554 44
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEe---cCCCCcccHHHHHHH
Q psy13453 598 SEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLR---SDDNGVLRGDALLTA 674 (764)
Q Consensus 598 TeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp---~d~~g~md~~~Le~~ 674 (764)
++++..++.+.|... ++..|++|..+|+|+.|++.+.|+..+.|+ .++++.||+++|+++
T Consensus 140 ~~~~~~~l~a~r~~~-----------------~~~~vi~s~~~H~s~~k~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~ 202 (434)
T d2z67a1 140 GMSISLCLSAARKKY-----------------GSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENA 202 (434)
T ss_dssp HHHHHHHHHHHHHHH-----------------CCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHH
T ss_pred HHHHHHHHHHHHHhh-----------------cCceEEEeccCCHHHHHHHHHhCCcceEEEeecCCCccCCCHHHHHHH
Confidence 455555555444331 123689999999999999999999766665 467889999999999
Q ss_pred HHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccC
Q psy13453 675 VKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWL 754 (764)
Q Consensus 675 I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l 754 (764)
|+++.+.+..+ +|+++.+++.+|.+|||++|+++|++||+|+|||+|||++..+++++.... +...+|++++|+||++
T Consensus 203 i~~~~~~~~~~-~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~-~~~~~D~~~~s~hK~l 280 (434)
T d2z67a1 203 IKKEIELGNRP-CVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKA-FKYRVDAVVSSSDKNL 280 (434)
T ss_dssp HHHHHHTTCCE-EEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHH-HTSCCSEEEEEHHHHH
T ss_pred HHhhhhcCCce-EEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhcccccccc-ccCCcceEEEcCcccc
Confidence 99988777544 799999999999999999999999999999999999999877776655443 3347899999999999
Q ss_pred CCCcCceeeC
Q psy13453 755 LVNFDCSAMW 764 (764)
Q Consensus 755 ~~P~~~g~l~ 764 (764)
++|.|+|+++
T Consensus 281 ~~~~g~~~~~ 290 (434)
T d2z67a1 281 LTPIGGGLVY 290 (434)
T ss_dssp CCCSSCEEEE
T ss_pred ccCCCccccc
Confidence 9999999874
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.77 E-value=8.1e-19 Score=187.29 Aligned_cols=161 Identities=16% Similarity=0.160 Sum_probs=132.6
Q ss_pred HHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHH
Q psy13453 567 VMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEK 646 (764)
Q Consensus 567 v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~k 646 (764)
+.+.+++++|.++ .+||+|||+||+.++.+.. . ++..|++++.+|+|+..
T Consensus 52 ~~~~~A~~~g~e~-----------~~~t~g~t~a~~~~~~al~----~---------------~gd~Vi~~~~~h~s~~~ 101 (364)
T d2e7ja1 52 IHNQLPKFLGCDV-----------ARVTNGAREAKFAVMHSLA----K---------------KDAWVVMDENCHYSSYV 101 (364)
T ss_dssp HHTHHHHHTTSSE-----------EEEESSHHHHHHHHHHHHC----C---------------TTCEEEEETTCCHHHHH
T ss_pred HHHHHHHHhCcCE-----------EEEECcHHHHHHHHHHHHh----C---------------CCcEEEeecccccccch
Confidence 4456788898753 6899999999998886531 1 12368899999999999
Q ss_pred HHHhCCCceEEEecC--CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEecccc
Q psy13453 647 SAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYA 724 (764)
Q Consensus 647 Aa~~lGl~v~~Vp~d--~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~G 724 (764)
++...|.+++.||++ .++.+|+++|+++|++..+++ .+.+|+.+..++.+|.+.|+++|+++|++||+|+|||+||+
T Consensus 102 ~~~~~g~~v~~v~~~~~~~~~i~~~~l~~~i~~~~k~~-~~~lv~i~~~~n~tG~~~~l~~I~~ia~~~~i~livD~a~~ 180 (364)
T d2e7ja1 102 AAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRG-EVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYA 180 (364)
T ss_dssp HHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTS-CEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTT
T ss_pred HHHhccceEEEeeeccccccccCHHHHHhhhhhhcccC-CceEEEeecCCCCCceeecchhheeccccccchhhccccch
Confidence 999999999999986 467999999999999876544 45678889999999999999999999999999999999998
Q ss_pred ccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 725 GSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 725 g~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
.+.+..+- +.. .+|.+++++||+++.|.++|+++
T Consensus 181 ~g~~~~~~-~~~-----g~D~~~~S~~K~~~~~g~~g~l~ 214 (364)
T d2e7ja1 181 IGRMPVSL-KEI-----GADFIVGSGHKSMAASGPIGVMG 214 (364)
T ss_dssp BTTBCCCH-HHH-----TCSEEEEEHHHHSSCCSSCEEEE
T ss_pred hhhhhhcc-ccc-----ccceeeeccccccCCCCCEEEEE
Confidence 87654321 111 25999999999999998898863
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=2e-18 Score=189.34 Aligned_cols=205 Identities=12% Similarity=-0.014 Sum_probs=157.6
Q ss_pred ccccccCCCCChHHHHHHH---HHHh-hcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHH
Q psy13453 524 QFNAYFPTGSSYPSIVGDM---LSGA-FGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASE 599 (764)
Q Consensus 524 ~~~~~~~~~~~~~~~lad~---l~~~-lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTe 599 (764)
-||++-.+++.+..++..+ +... .|.+...+..+..++++-+++++.+++++|..+. ...+||+++|+
T Consensus 24 iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~--------~~i~~~~~~T~ 95 (405)
T d1jf9a_ 24 AYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSA--------EELVFVRGTTE 95 (405)
T ss_dssp EECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCG--------GGEEEESSHHH
T ss_pred EEEeCccccCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCc--------ccccccCcHHH
Confidence 5899887777666655433 3222 2333344455555667777899999999996542 36899999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHH----HhCCCceEEEecCCCCcccHHHHHHHH
Q psy13453 600 ATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSA----IIGDVPVRQLRSDDNGVLRGDALLTAV 675 (764)
Q Consensus 600 ANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa----~~lGl~v~~Vp~d~~g~md~~~Le~~I 675 (764)
++...+......... ++..|++++.+|.|+..++ +..|++++.+|++++|.+|++.+++++
T Consensus 96 ~~~~~~~~~~~~~~~---------------~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~g~~~~~~~~~~i 160 (405)
T d1jf9a_ 96 GINLVANSWGNSNVR---------------AGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLF 160 (405)
T ss_dssp HHHHHHHHHHHHHCC---------------TTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHC
T ss_pred HHHHHHhcccccccC---------------CCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCCCCcCCHHHHHHhc
Confidence 987766543322211 2336889999998865554 456999999999999999999999887
Q ss_pred HHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCC
Q psy13453 676 KEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLL 755 (764)
Q Consensus 676 ~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~ 755 (764)
.+. +.+|+.++.++.+|.+.||++|+++|+++|+++||||+++.+.+..+-.. . .+|.+++++|||+
T Consensus 161 ~~~------t~lv~~~~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~~~id~~~---~---~~D~~~~s~hK~~- 227 (405)
T d1jf9a_ 161 DEK------TRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQA---L---DCDFYVFSGHKLY- 227 (405)
T ss_dssp CTT------EEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHH---H---TCSEEEEEGGGTT-
T ss_pred cCC------cEEEEEecCCCcccccCchHHhhhHHHHcCCeeecccceeccccccchhh---c---CCceeeccccccc-
Confidence 765 45999999999999999999999999999999999999999887664222 1 3599999999996
Q ss_pred CCcCceeeC
Q psy13453 756 VNFDCSAMW 764 (764)
Q Consensus 756 ~P~~~g~l~ 764 (764)
.|.|+|++|
T Consensus 228 Gp~G~g~l~ 236 (405)
T d1jf9a_ 228 GPTGIGILY 236 (405)
T ss_dssp SCSSCEEEE
T ss_pred cCCCceeee
Confidence 599999986
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=9.3e-18 Score=182.08 Aligned_cols=204 Identities=19% Similarity=0.183 Sum_probs=159.3
Q ss_pred CccccccCCCCChHHHHHHHHHHhhc-------ccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeC
Q psy13453 523 PQFNAYFPTGSSYPSIVGDMLSGAFG-------LIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQS 595 (764)
Q Consensus 523 P~~~~~~~~~~~~~~~lad~l~~~lN-------~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTs 595 (764)
|-||++-.+++.++.++ +.+..++. .....+..+..++.+-.++++.+++++|.+++ ..+||+
T Consensus 3 ~iYlD~aa~~p~~~~v~-ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~---------~I~~~~ 72 (391)
T d1p3wa_ 3 PIYLDYSATTPVDPRVA-EKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPR---------EIVFTS 72 (391)
T ss_dssp SEECBTTTCCCCCHHHH-HHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGG---------GEEEES
T ss_pred eEEeeCccccCCCHHHH-HHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCC---------cEEEEC
Confidence 77999988887777766 44455442 22223334445667777889999999999874 689999
Q ss_pred ChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHH---hCCCceEEEecCCCCcccHHHHH
Q psy13453 596 TASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAI---IGDVPVRQLRSDDNGVLRGDALL 672 (764)
Q Consensus 596 GgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~---~lGl~v~~Vp~d~~g~md~~~Le 672 (764)
|+|+++..++.+........ ...|++++..|.++...++ ..|+.++.||.+++|.+|+++++
T Consensus 73 ~~t~~l~~~~~~~~~~~~~~---------------gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~~~ 137 (391)
T d1p3wa_ 73 GATESDNLAIKGAANFYQKK---------------GKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELE 137 (391)
T ss_dssp SHHHHHHHHHHHHHHHHGGG---------------CCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHH
T ss_pred CHHHHHHHHHhhhhhhhcCC---------------CCEEEEeccccchHHHHHHHHHHcCCEEEEeCCCCCCeEcHHHHH
Confidence 99999887777655443321 2368899999999866554 46999999999999999999999
Q ss_pred HHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCc
Q psy13453 673 TAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHK 752 (764)
Q Consensus 673 ~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK 752 (764)
++|++.+ -+|+.+..++.+|.+.|+++|+++|++||++++||++++.+....+- ... .+|.+++++||
T Consensus 138 ~~i~~~T------~lv~is~~~n~tG~~~~~~~I~~~~~~~~~~~ivD~~~~~g~~~~d~-----~~~-~~D~~~~s~~k 205 (391)
T d1p3wa_ 138 AAMRDDT------ILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDL-----SQL-KVDLMSFSGHK 205 (391)
T ss_dssp HHCCTTE------EEEECCSBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTBTTBCCCT-----TTS-CCSEEEEESTT
T ss_pred HhCCCCc------EEEEEECCCCCCeeECCHHHHHHHhccCCcEEEEeeccccCCccccc-----hhc-ccccccccccc
Confidence 9997654 48999999999999999999999999999999999999887654431 111 46999999999
Q ss_pred cCCCCcCceeeC
Q psy13453 753 WLLVNFDCSAMW 764 (764)
Q Consensus 753 ~l~~P~~~g~l~ 764 (764)
|+ .|.++|++|
T Consensus 206 ~~-g~~g~g~~~ 216 (391)
T d1p3wa_ 206 IY-GPKGIGALY 216 (391)
T ss_dssp TT-SCSSCEEEE
T ss_pred cc-CCCceEEEE
Confidence 96 588888875
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.74 E-value=2.1e-18 Score=190.12 Aligned_cols=232 Identities=9% Similarity=0.011 Sum_probs=170.5
Q ss_pred cccccccc-ccccCCcceeeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCccccc
Q psy13453 3 WRSLIPKL-AYPSETLSLLIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQD 81 (764)
Q Consensus 3 ~~~~~~~~-~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~ 81 (764)
+|...++. .+.|++ .|+|+.||+.+.|++...|+.++.+++++||+++|+++|+++.+.+.+++++++.|+|.+|.
T Consensus 150 ~r~~~~~~~vi~s~~---~H~s~~k~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~ 226 (434)
T d2z67a1 150 ARKKYGSNVVIYPYA---SHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRN 226 (434)
T ss_dssp HHHHHCCCEEEEECC---CCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBC
T ss_pred HHHhhcCceEEEecc---CCHHHHHHHHHhCCcceEEEeecCCCccCCCHHHHHHHHHhhhhcCCceEEEeccCcCCCcc
Confidence 33333444 678887 89999999999999994444555678899999999999999998888777789999999999
Q ss_pred ccCchhhhc-----CCCceecccccc-------------------------c-----cc-eeeeecCCCccccccccccc
Q psy13453 82 IQSLNAPVS-----NGPLKVGGVLRR-------------------------V-----YS-SCLVPRGQKSLRTTVLFHFL 125 (764)
Q Consensus 82 iDpi~~ia~-----~~wlHVDa~l~~-------------------------~-----y~-s~ll~rd~~~l~~~~s~~~d 125 (764)
+|||++|++ ++|+|||+++.. + .+ ++++.+++..++.
T Consensus 227 ~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~~~~D~~~~s~hK~l~~~~g~~~~~~~~~~~~~~------- 299 (434)
T d2z67a1 227 SDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKE------- 299 (434)
T ss_dssp CCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHH-------
T ss_pred ccCHHHHHHHHHHhCCeEEEeccchhhhhhccccccccccCCcceEEEcCccccccCCCccccccCcHHHHHH-------
Confidence 999999887 999999996411 1 11 2333344332221
Q ss_pred cCCcccC-CCCcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcC---CCeEEeCCCCceeEEEEeeccccccc
Q psy13453 126 FQHWQIP-LGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQD---DRFELVCPPSMGLVCFRLKVRFWDKL 201 (764)
Q Consensus 126 ~~d~tle-~SRr~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~---p~~ell~~P~l~iV~Fry~P~~~~~~ 201 (764)
...+.. +++...++.+|+++..+|.+|+.+++++..++++++++.|++. .++.++..+....+++....
T Consensus 300 -~~~~~~~~~~~~~~~~~~a~l~~~~~~g~~~~~~~~~~~a~~l~~~L~~l~~~~g~~ll~~~~~~~~~~~~~~------ 372 (434)
T d2z67a1 300 -ISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNS------ 372 (434)
T ss_dssp -HHTTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCCCSSEEEEECSS------
T ss_pred -HHhhcccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhhhcCceecCCCCCceeeeecCC------
Confidence 112233 3447788899999999999999999999999999999999874 47888888888777776431
Q ss_pred cccccCccCCccHHHHHHHHHHHhcCcE---EEEece--------eCCeeEEEEeccCCCCCHHHHHHHHHHHHH
Q psy13453 202 DNLFGTISFGDNDLNKAVYDRIIARKVI---YIVKGS--------FQDRLFMRFAICSSQTEESDVQLGWNEIRT 265 (764)
Q Consensus 202 ~~~~~~~~~~~d~~n~~L~~~L~~~G~~---~vs~t~--------l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~ 265 (764)
+ ..++...|.++|.. ...... .....++|++ +...+|++|||.|++.|++
T Consensus 373 -----------~--~~~l~~~L~~~gI~g~~v~~~l~~~g~~~~~~~~~~~l~~~-~s~~~T~edID~~i~~L~k 433 (434)
T d2z67a1 373 -----------D--PVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMN-AAIGVRTEDIVNSVSKLEK 433 (434)
T ss_dssp -----------C--HHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEE-CCTTCCHHHHHHHHHHHHT
T ss_pred -----------C--HHHHHHHHHHcCCeeeehhhhccccCeeeecccCCCeEEEe-cCCCCCHHHHHHHHHHHhc
Confidence 1 23566777777752 111111 0123568874 5667799999999999976
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.72 E-value=3e-17 Score=177.06 Aligned_cols=203 Identities=13% Similarity=0.075 Sum_probs=148.8
Q ss_pred CccccccCCCCChHHHH---HHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHH
Q psy13453 523 PQFNAYFPTGSSYPSIV---GDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASE 599 (764)
Q Consensus 523 P~~~~~~~~~~~~~~~l---ad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTe 599 (764)
--||+|-..++.+..++ .+.+....++....+..+.....+..++.+.+++++|.+++ ..+||+|+|+
T Consensus 8 ~~yld~~~~~~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~---------~i~~~~g~t~ 78 (381)
T d1elua_ 8 KTYFNFGGQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPN---------TITITDNVTT 78 (381)
T ss_dssp SEECCTTTCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGG---------GEEEESSHHH
T ss_pred CEEeeCCcccCCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCCcc---------cEEEECChHH
Confidence 35888887777666543 33444433444445555666667777899999999998763 6899999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHH----hCCCceEEEecCCCCccc--HHHHHH
Q psy13453 600 ATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAI----IGDVPVRQLRSDDNGVLR--GDALLT 673 (764)
Q Consensus 600 ANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~----~lGl~v~~Vp~d~~g~md--~~~Le~ 673 (764)
++.+++.+.+. .++..|++++.+|.|+..++. ..|+.++.||.+.+...+ .+.|++
T Consensus 79 a~~~~~~~l~~------------------~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~ 140 (381)
T d1elua_ 79 GCDIVLWGLDW------------------HQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLAN 140 (381)
T ss_dssp HHHHHHHHSCC------------------CTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHT
T ss_pred Hhhhcchhhhh------------------cCCceEEEeccccceeeeccccccccccccccccccccccccchHHHHHHh
Confidence 98777653210 123357889999988766544 468999999987544433 445554
Q ss_pred HHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhc----CCEEEEeccccccccccchhhhhhcCCCcccEEEEc
Q psy13453 674 AVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEY----NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFN 749 (764)
Q Consensus 674 ~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~----glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d 749 (764)
++.+ .+-+|+.+..++.+|.+.|+++|.++|+++ ++++||||+++.+....+ ++.+ .+|.++++
T Consensus 141 ~i~~------~t~~v~i~~~~n~tG~~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~~~-----~~~~-~~D~~~~s 208 (381)
T d1elua_ 141 HLGP------KTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLD-----FSRL-EVDYYAFT 208 (381)
T ss_dssp TCCT------TEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCC-----TTTS-CCSEEEEE
T ss_pred hhcc------cccccccccccccccccchhhHHHHHHhhccccccccccccccccccccccc-----cccc-cccccccc
Confidence 4443 355999999999999999999999999984 699999999998755443 2222 47999999
Q ss_pred CCccCCCCcCceeeC
Q psy13453 750 THKWLLVNFDCSAMW 764 (764)
Q Consensus 750 ~HK~l~~P~~~g~l~ 764 (764)
+|||++.|.|+|++|
T Consensus 209 ~~K~~~~p~G~g~l~ 223 (381)
T d1elua_ 209 GHKWFAGPAGVGGLY 223 (381)
T ss_dssp SSSTTCCCTTCEEEE
T ss_pred ccccccccchhhHHH
Confidence 999999999999885
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.71 E-value=4.4e-18 Score=187.86 Aligned_cols=240 Identities=11% Similarity=0.043 Sum_probs=166.7
Q ss_pred ccccCCcceeeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccCchhhh
Q psy13453 11 AYPSETLSLLIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQSLNAPV 89 (764)
Q Consensus 11 ~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDpi~~ia 89 (764)
.+.|++ .|||+.||++++|++...|..++++++++||+++|+++|++...++ +++ |+++|+|++|.+|||++|+
T Consensus 143 vi~~~~---~H~s~~~a~~~~g~~~~~v~~~~~~~~~~id~~~l~~~i~~~~~~~--~~~v~~~~~~~~~G~~~~~~~i~ 217 (445)
T d3bc8a1 143 IIWPRI---DQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEH--ILCLHSTTACFAPRVPDRLEELA 217 (445)
T ss_dssp EEEECC---CCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGGG--EEEEEEESSCCTTBCCCCHHHHH
T ss_pred EEEcCc---ccHHHHHHHHHcCCeeEEEEeeccCcccccCHHHHHHHHHhccccC--eEEEEEeCCCCCCeeehhHHHHH
Confidence 566777 7999999999999999444445667899999999999999865533 344 7999999999999999998
Q ss_pred c-----CCCceeccccc-------------------------------cccc-eeeeecCCCccccccccccccCCcccC
Q psy13453 90 S-----NGPLKVGGVLR-------------------------------RVYS-SCLVPRGQKSLRTTVLFHFLFQHWQIP 132 (764)
Q Consensus 90 ~-----~~wlHVDa~l~-------------------------------~~y~-s~ll~rd~~~l~~~~s~~~d~~d~tle 132 (764)
+ ++|+|||++.. .+++ ++++.+++..+... ..+..
T Consensus 218 ~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~vd~~~~s~hK~~~~p~g~~~l~~~~~~~~~~~--------~~~~~ 289 (445)
T d3bc8a1 218 VICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDI--------SKMYP 289 (445)
T ss_dssp HHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHH--------HHHSC
T ss_pred HHHHHhCCcEEEEccchhhhhhccccchhccCcCCcceEEecCccccccCCCCceeeeCChHHHHHH--------HHHHh
Confidence 7 99999999631 1121 34444544333221 12334
Q ss_pred CCC-cccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCC---CeEEeCCCCceeEEEEeeccccccccccccCc
Q psy13453 133 LGR-RFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDD---RFELVCPPSMGLVCFRLKVRFWDKLDNLFGTI 208 (764)
Q Consensus 133 ~SR-r~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p---~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~ 208 (764)
+++ +...+.+|++++++|.+||.+.+++..++++++.+.+++.. +..++..+......+.+... ...
T Consensus 290 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~-~~~-------- 360 (445)
T d3bc8a1 290 GRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKT-IDG-------- 360 (445)
T ss_dssp SCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTT-TSS--------
T ss_pred hcccCcchHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHhhcCceeecCCCCCcceEEEeee-ccc--------
Confidence 444 77788999999999999999999999999999999998753 66677777666555544311 000
Q ss_pred cCCccHHHHHHHHHHHhcCc---EEE---Eecee--------------CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13453 209 SFGDNDLNKAVYDRIIARKV---IYI---VKGSF--------------QDRLFMRFAICSSQTEESDVQLGWNEIRTATE 268 (764)
Q Consensus 209 ~~~~d~~n~~L~~~L~~~G~---~~v---s~t~l--------------~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~ 268 (764)
..... -..+...|.+.|. .+. ..... -...++|+. ++..+|++|||.+++.|+++.+
T Consensus 361 -~~~~~-~~~l~~~L~~~gI~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~i~i~-~~~~~T~eDID~~v~~L~kilk 437 (445)
T d3bc8a1 361 -HHDKA-VTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAA-AAIGMKMQDVDLFIKRLDKCLN 437 (445)
T ss_dssp -SSSCH-HHHHHHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEE-CCTTCCHHHHHHHHHHHHHHHH
T ss_pred -cCCCC-HHHHHHHHHHcCCCcceeeccccccchhhhhhhhcCCCCccCCCCeEEEe-CcCCCCHHHHHHHHHHHHHHHH
Confidence 01111 1234455555543 111 00000 012457774 5678899999999999999999
Q ss_pred HHHccCC
Q psy13453 269 EVLRGKS 275 (764)
Q Consensus 269 ~i~~~~~ 275 (764)
++.+.++
T Consensus 438 ~~rk~~~ 444 (445)
T d3bc8a1 438 IVRKEQT 444 (445)
T ss_dssp HHHHHHT
T ss_pred HHHhhhc
Confidence 9877653
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.71 E-value=7.4e-17 Score=176.77 Aligned_cols=205 Identities=12% Similarity=0.001 Sum_probs=156.8
Q ss_pred ccccccCCCCChHHHHHHHHHHhh----cccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHH
Q psy13453 524 QFNAYFPTGSSYPSIVGDMLSGAF----GLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASE 599 (764)
Q Consensus 524 ~~~~~~~~~~~~~~~lad~l~~~l----N~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTe 599 (764)
-||++-.+++.+..++..+..... |.+...+..+..+..+-+++++.+++++|.++. ...+||+++|+
T Consensus 24 iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~--------~~i~~~~~tt~ 95 (408)
T d1t3ia_ 24 VYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSP--------REIVYTRNATE 95 (408)
T ss_dssp EECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCG--------GGEEEESSHHH
T ss_pred EEeeCccccCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCc--------ccEEeecchHH
Confidence 599999888877766544433322 223344555666667777789999999999753 35789999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHH----HHhCCCceEEEecCCCCcccHHHHHHHH
Q psy13453 600 ATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKS----AIIGDVPVRQLRSDDNGVLRGDALLTAV 675 (764)
Q Consensus 600 ANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kA----a~~lGl~v~~Vp~d~~g~md~~~Le~~I 675 (764)
++...+.......+ .+...|++++.+|.|+..+ +...|+.++.+|.+.++..+.+.|++++
T Consensus 96 ~~n~~~~~~~~~~~---------------~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~l~~~~ 160 (408)
T d1t3ia_ 96 AINLVAYSWGMNNL---------------KAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLL 160 (408)
T ss_dssp HHHHHHHHTHHHHC---------------CTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHC
T ss_pred HHHHHHhhcccccc---------------CCCCEEEeecccchhhhhhhhhhhhccCceEeeeeccccccccHHHhhhcc
Confidence 97665554322211 1233688899999886554 4456999999999999999999999988
Q ss_pred HHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCC
Q psy13453 676 KEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLL 755 (764)
Q Consensus 676 ~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~ 755 (764)
.++ +.+|+.++.++.+|.+.|+++|+++|+++|+++||||+++.+.+..+-... .+|.+++++|||+
T Consensus 161 ~~~------t~lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g~~~id~~~~------~~D~~~~s~hK~~- 227 (408)
T d1t3ia_ 161 SEK------TKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLI------DCDWLVASGHKMC- 227 (408)
T ss_dssp CTT------EEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH------TCSEEEEEGGGTT-
T ss_pred CCC------ceEEEEecccccccccCcHHHHhhhhhccCceeeeccceeccccccccccc------CCceEEecccccc-
Confidence 665 449999999999999999999999999999999999999998877643221 3599999999995
Q ss_pred CCcCceeeC
Q psy13453 756 VNFDCSAMW 764 (764)
Q Consensus 756 ~P~~~g~l~ 764 (764)
.|.|+|++|
T Consensus 228 gp~G~g~l~ 236 (408)
T d1t3ia_ 228 APTGIGFLY 236 (408)
T ss_dssp SCTTCEEEE
T ss_pred CCCCccccc
Confidence 599999986
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.66 E-value=9.8e-16 Score=164.89 Aligned_cols=204 Identities=15% Similarity=0.110 Sum_probs=151.6
Q ss_pred ccccccCCCCChHHHHHHHHHHhhccc---CccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHH
Q psy13453 524 QFNAYFPTGSSYPSIVGDMLSGAFGLI---GFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEA 600 (764)
Q Consensus 524 ~~~~~~~~~~~~~~~lad~l~~~lN~n---~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeA 600 (764)
-||++-.+++.+.+++..+....-+.+ ...+..+..+.++-.++++.+++++|.+++ ..+|++|+|++
T Consensus 3 iyld~a~~~~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~---------~i~~~~~~T~~ 73 (376)
T d1eg5a_ 3 VYFDNNATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPS---------EIFFTSCATES 73 (376)
T ss_dssp EECBTTTCCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGG---------GEEEESCHHHH
T ss_pred EEEECcccccCCHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCC---------cEEEECCHHHH
Confidence 377887666766666544333222211 122233445566666789999999999774 68999999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHH---HhCCCceEEEecCCCCcccHHHHHHHHHH
Q psy13453 601 TLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSA---IIGDVPVRQLRSDDNGVLRGDALLTAVKE 677 (764)
Q Consensus 601 Nl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa---~~lGl~v~~Vp~d~~g~md~~~Le~~I~~ 677 (764)
+..++......... ++-.++++...|.+..-.. ...|+.++.||++++|++|+++++++|.+
T Consensus 74 l~~~~~~~~~~~~~---------------~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~~~~id~~~l~~~i~~ 138 (376)
T d1eg5a_ 74 INWILKTVAETFEK---------------RKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE 138 (376)
T ss_dssp HHHHHHHHHHHTTT---------------TCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT
T ss_pred HHhhhhcccccccc---------------cCcccccccccchhhHHHHHHHHhcCCEEEEEcCCCCCeECHHHHHHhcCC
Confidence 77766543332211 2335677777787765554 44599999999999999999999999976
Q ss_pred hhhcCCCceEEEEeeccCCccccccHHHHHHHHHhc--CCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCC
Q psy13453 678 DLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEY--NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLL 755 (764)
Q Consensus 678 ~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~--glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~ 755 (764)
+ +.+|+.++.++.+|.+.|+++|.++|+++ ++.++|||+++.+.+..+- +.+ .+|.+++++|||+
T Consensus 139 ~------t~lv~is~v~~~tG~~~~~~~i~~~~~~~~~~~~~~vD~~q~~g~~~~d~-----~~~-~~D~~~~s~~K~~- 205 (376)
T d1eg5a_ 139 D------TFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSL-----EKL-EVDYASFSAHKFH- 205 (376)
T ss_dssp T------EEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCC-----TTT-CCSEEEEEGGGGT-
T ss_pred C------ceEEEEECCccccceeeeehhhhhhhhhcccCceeEEEeeeccccccccc-----ccc-Cccceecccceee-
Confidence 5 45999999999999999999999998665 8999999999998776542 111 3699999999996
Q ss_pred CCcCceeeC
Q psy13453 756 VNFDCSAMW 764 (764)
Q Consensus 756 ~P~~~g~l~ 764 (764)
.|.|+|++|
T Consensus 206 gp~G~~~l~ 214 (376)
T d1eg5a_ 206 GPKGVGITY 214 (376)
T ss_dssp SCTTCEEEE
T ss_pred cCCCceeEE
Confidence 699999986
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.60 E-value=6.6e-15 Score=163.23 Aligned_cols=170 Identities=14% Similarity=-0.003 Sum_probs=124.0
Q ss_pred HHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhH
Q psy13453 565 VLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV 644 (764)
Q Consensus 565 ~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv 644 (764)
.++.+.+|++||.+. .+|+++||++++.|+..+.- .+.-.|++++.+|.|+
T Consensus 69 ~eae~~~A~~~ga~~-----------a~f~~~Gtt~~n~a~i~a~~------------------~~gd~Vi~~~~~H~Sv 119 (462)
T d1c4ka2 69 VAAEKHAARVYNADK-----------TYFVLGGSSNANNTVTSALV------------------SNGDLVLFDRNNHKSV 119 (462)
T ss_dssp HHHHHHHHHHTTCSE-----------EEEESSHHHHHHHHHHHHHC------------------CTTCEEEEETTCCHHH
T ss_pred HHHHHHHHHHhCCCe-----------EEEECCchHHHHHHHHHHhc------------------CCCCeEEecccchHHH
Confidence 345668899999854 57888888776666554321 1234689999999999
Q ss_pred HHHHHhCCC---ceEEEecCCCC--------cccHHHHHHHHHH---hhhcCCCceEEEEeeccCCccccccHHHHHHHH
Q psy13453 645 EKSAIIGDV---PVRQLRSDDNG--------VLRGDALLTAVKE---DLAKGLIPCCLIATLGTTGTCAFDNLEELGPIC 710 (764)
Q Consensus 645 ~kAa~~lGl---~v~~Vp~d~~g--------~md~~~Le~~I~~---~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~ 710 (764)
..++.+++. .++.+++|+.| .++.+.+++.+.+ ..+.+..+..|++...+|..|.+.|+++|+++|
T Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia 199 (462)
T d1c4ka2 120 YNSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRI 199 (462)
T ss_dssp HHHHTTTTCCEEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHH
T ss_pred HHHHHHHhcCCceeeecccccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHH
Confidence 998887643 34555566655 2344444444321 223345567777788888899999999999999
Q ss_pred HhcCCEEEEeccccccccccchhhhhhc--CC-----CcccEEEEcCCccCCCCcCceee
Q psy13453 711 QEYNIWLHVDAAYAGSALLLPEYAHLKR--GL-----EYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 711 ~~~glwLHVDaA~Gg~~l~~~~~r~~l~--gi-----e~aDSit~d~HK~l~~P~~~g~l 763 (764)
++||+++|||+||++++.+.+.++.... |. ..+|.+++++||+++.+.+++++
T Consensus 200 ~~~g~~l~vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~g~ll 259 (462)
T d1c4ka2 200 GHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQI 259 (462)
T ss_dssp GGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEE
T ss_pred HHcCCEEEEechhhccccccCcCCcchhhccccccccCCccEEEEecCcccccccceEEE
Confidence 9999999999999999998887665432 21 23699999999999999888765
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.52 E-value=8.6e-15 Score=158.44 Aligned_cols=208 Identities=16% Similarity=0.056 Sum_probs=143.2
Q ss_pred CCccccccCCCCChHHHHHHHHHHhhccc--C--ccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCCh
Q psy13453 522 SPQFNAYFPTGSSYPSIVGDMLSGAFGLI--G--FSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTA 597 (764)
Q Consensus 522 ~P~~~~~~~~~~~~~~~lad~l~~~lN~n--~--~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGg 597 (764)
+-.||++-..++.+..++..+.....+.+ . ..|. +.....+.+++.+.+++++|.+++ +.+||+++
T Consensus 27 ~~iYLd~as~g~~p~~v~~a~~~~l~~~~~~~~~~~~~-~~~~~~~~e~~R~~iA~llga~~~---------ei~~~~~~ 96 (404)
T d1qz9a_ 27 GVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIRSWN-SAGWRDLSERLGNRLATLIGARDG---------EVVVTDTT 96 (404)
T ss_dssp TCEECCTTTSCCCBTTHHHHHHHHHHTCCCCCGGGHHH-HTSGGGHHHHHHHHHHTTTTCCTT---------SEEECSCH
T ss_pred CCEEcCCcccccCCHHHHHHHHHHHHHHhcccCccccc-chhHHHHHHHHHHHHHHHhCCCCC---------cEEEecCc
Confidence 34588887666665554443322222221 1 1111 122335667899999999999874 68999999
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHH
Q psy13453 598 SEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKE 677 (764)
Q Consensus 598 TeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~ 677 (764)
|+++...+..+........ +...+++++..|++........+.++..++.+.++..+++.++++|++
T Consensus 97 T~~~~~~~~~~~~~~~~~~-------------~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 163 (404)
T d1qz9a_ 97 SINLFKVLSAALRVQATRS-------------PERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDSPEELPQAIDQ 163 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHS-------------TTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESSGGGHHHHCST
T ss_pred hHHHHHHhhhhhhhhcccC-------------CCcEEEEeccccchHHHHHHhhhheeeeeceeccccccchhHHHhcCC
Confidence 9998776655433222110 112355667777776555544444445555555677888899998877
Q ss_pred hhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 678 DLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 678 ~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
++ .+|+++..++.+|.+.|+++|+++|+++|+++||||+++.+....+-... .+|.++++.|||++.|
T Consensus 164 ~T------~lV~i~~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~~~~~~~~~------~~d~~~~s~~K~~~~~ 231 (404)
T d1qz9a_ 164 DT------AVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQA------GADYAIGCTYKYLNGG 231 (404)
T ss_dssp TE------EEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHH------TCSEEEECSSSTTCCC
T ss_pred Cc------eEEEEecccccccceecHHHHhccccccccceeEEeeccccccccccccc------cceEEEEechhhcccC
Confidence 64 49999999999999999999999999999999999999998766542221 3499999999999776
Q ss_pred cC-ceeeC
Q psy13453 758 FD-CSAMW 764 (764)
Q Consensus 758 ~~-~g~l~ 764 (764)
.+ +|++|
T Consensus 232 ~g~~g~~~ 239 (404)
T d1qz9a_ 232 PGSQAFVW 239 (404)
T ss_dssp TTCCCEEE
T ss_pred CceEEEEE
Confidence 55 56653
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1e-13 Score=149.09 Aligned_cols=171 Identities=13% Similarity=0.071 Sum_probs=133.9
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
-++.+.++..++.+.+++++|.++. ...+||+|||+++..++... .. ++..++
T Consensus 46 Rs~~f~~i~~ea~~~l~~llg~~~~--------~~ii~~gsgT~a~~~~i~~l----~~---------------~~~~~~ 98 (388)
T d1h0ca_ 46 MSKDMYQIMDEIKEGIQYVFQTRNP--------LTLVISGSGHCALEAALVNV----LE---------------PGDSFL 98 (388)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTCCCS--------EEEEESSCHHHHHHHHHHHH----CC---------------SSCCEE
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCC--------cEEEEcCcHHHHHHHHHHHh----hc---------------cCCcee
Confidence 5788999999999999999999875 24789999999987766532 11 122355
Q ss_pred ecCCcchhHHHH--HHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhc
Q psy13453 636 TSDQSNSSVEKS--AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEY 713 (764)
Q Consensus 636 ~S~~aH~Sv~kA--a~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~ 713 (764)
+....|++.... +...+..+..++.+..+.+|.+.+++.+.... +.+|+.+..+|.+|.+.|+++|+++|++|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~n~tG~i~pi~~i~~~~~~~ 173 (388)
T d1h0ca_ 99 VGANGIWGQRAVDIGERIGARVHPMTKDPGGHYTLQEVEEGLAQHK-----PVLLFLTHGESSTGVLQPLDGFGELCHRY 173 (388)
T ss_dssp ECBSSHHHHHHHHHHHHHC--CBCCBCCTTCCCCHHHHHHHHHHHC-----CSEEEEESEETTTTEECCCTTHHHHHHTT
T ss_pred eecccceeeeeccccccccccccccccCCccccchHHHHHHhccCC-----cceEEEeeeeeccccccCHHHHHHHhhcc
Confidence 666777765433 34456677777788888999999988887642 45999999999999999999999999999
Q ss_pred CCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 714 NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 714 glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
|+++||||+++.+....+- +.+ .+|.++++.|||++.|.++|+++
T Consensus 174 g~~~~vD~~qs~g~~~~d~-----~~~-~~D~~~~s~~K~~~gp~g~~~~~ 218 (388)
T d1h0ca_ 174 KCLLLVDSVASLGGTPLYM-----DRQ-GIDILYSGSQKALNAPPGTSLIS 218 (388)
T ss_dssp TCEEEEECTTTTTTSCCCT-----TTT-TCSEEEEESSSTTCCCTTCEEEE
T ss_pred cccceeccccccccccccc-----ccc-ccceecccccccccCCCceEEEe
Confidence 9999999999987665531 222 45999999999999999999874
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.42 E-value=3.9e-13 Score=142.80 Aligned_cols=172 Identities=13% Similarity=0.057 Sum_probs=121.3
Q ss_pred chHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEec
Q psy13453 558 PACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTS 637 (764)
Q Consensus 558 p~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S 637 (764)
+.+..+.+++.+.+++++|.++++ ...+||+|||+++..++... .. .++.+++++
T Consensus 29 ~~~~~~~~~~r~~l~~l~~~~~~~-------~~i~~t~s~T~~~~~~~~~l----~~--------------~~~~~~~~~ 83 (361)
T d1m32a_ 29 DYNIGVVEQIRQQLTALATASEGY-------TSVLLQGSGSYAVEAVLGSA----LG--------------PQDKVLIVS 83 (361)
T ss_dssp HHHTTTHHHHHHHHHHHHCSSSSE-------EEEEEESCHHHHHHHHHHHS----CC--------------TTCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCC-------EEEEECCCHHHHHHHHHHHh----hh--------------hccccceee
Confidence 445566678999999999998742 23678999999987665421 10 112345555
Q ss_pred CCcchhH-HHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCE
Q psy13453 638 DQSNSSV-EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIW 716 (764)
Q Consensus 638 ~~aH~Sv-~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glw 716 (764)
...+.+. ...+...+.....+........+.+..+.....+ ..+.+|..+..+|.+|.+.|+++|+++|++||++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~tG~~~~i~~i~~~~~~~g~~ 159 (361)
T d1m32a_ 84 NGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNAD----PTISHIAMVHSETTTGMLNPIDEVGALAHRYGKT 159 (361)
T ss_dssp SSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHC----TTCCEEEEESEETTTTEECCHHHHHHHHHHHTCE
T ss_pred ehhhhhhHHHHhhhhhcccccccccccCCccchhhHHHHHhc----cCccceEEEeeecccccchhhhhhhhhhccccee
Confidence 5544443 3334555666666665554444444433333222 2366999999999999999999999999999999
Q ss_pred EEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 717 LHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 717 LHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
++|||+++.+....+- +.+ .+|.+++++|||++.|.|.|++|
T Consensus 160 ~~vDa~qs~G~~~~d~-----~~~-~~D~~~~s~~K~l~gp~G~g~l~ 201 (361)
T d1m32a_ 160 YIVDAMSSFGGIPMDI-----AAL-HIDYLISSANKCIQGVPGFAFVI 201 (361)
T ss_dssp EEEECTTTTTTSCCCT-----TTT-TCSEEEEESSSTTCCCSSEEEEE
T ss_pred eEeecccccCcccccc-----ccc-ccceEEeeecccccCCCCceEEE
Confidence 9999999988766542 112 46999999999999999999885
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.30 E-value=3.9e-12 Score=131.13 Aligned_cols=192 Identities=14% Similarity=0.113 Sum_probs=128.4
Q ss_pred hHHHHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhh
Q psy13453 535 YPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMIN 614 (764)
Q Consensus 535 ~~~~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~ 614 (764)
.|.++..+..+..+ ....|..+ ...+++.+++++++|.+. ..+||+|||+||+.++.+++..
T Consensus 16 ~P~v~~A~~~a~~~-~~~~~~~~----~~~~~l~~~la~~~g~~~----------~v~f~~sGt~An~~a~~~~~~~--- 77 (345)
T d1v72a1 16 SPEVAQALVKHSSG-QAGPYGTD----ELTAQVKRKFCEIFERDV----------EVFLVPTGTAANALCLSAMTPP--- 77 (345)
T ss_dssp CHHHHHHHHHTTSS-CCCSTTCS----HHHHHHHHHHHHHHTSCC----------EEEEESCHHHHHHHHHHTSCCT---
T ss_pred CHHHHHHHHHHhcc-CccccCCC----HHHHHHHHHHHHHHCCCc----------EEEECCchHHHHHHHHHHHHhc---
Confidence 45666555443322 23444444 455677778999999764 4789999999999998754321
Q ss_pred hhccCCCCCccccccCceEEEecCCcchhHHHHHH---hCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEE--
Q psy13453 615 HWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAI---IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLI-- 689 (764)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~---~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~Vv-- 689 (764)
...++.....|+++...+. ..+..+..++.+.++.++++.+++.+.+.......+..++
T Consensus 78 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 141 (345)
T d1v72a1 78 ----------------WGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVS 141 (345)
T ss_dssp ----------------TEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEE
T ss_pred ----------------CCccccccccceeeechhhHHHhcCcccccccccccccccHHHhhhhhcccccccccccceeee
Confidence 2246678888988876643 3566788888888999999999999987655444444333
Q ss_pred EeeccCC--ccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhh-cCCCcccEEEEcCCccCCCCcCc
Q psy13453 690 ATLGTTG--TCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLK-RGLEYVDSFDFNTHKWLLVNFDC 760 (764)
Q Consensus 690 ataGTT~--~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l-~gie~aDSit~d~HK~l~~P~~~ 760 (764)
.+.++.. .+.++++.+++++|++||+|+|+|++++++........... ......+.++...||.++...+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (345)
T d1v72a1 142 ITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEA 215 (345)
T ss_dssp EESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCSSCEE
T ss_pred eeccccccccccchhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhccccccccccCccccccccccc
Confidence 3333332 34568899999999999999999999988654433211111 11123467788888866654443
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=2.1e-11 Score=134.95 Aligned_cols=185 Identities=15% Similarity=0.146 Sum_probs=128.5
Q ss_pred CccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccC
Q psy13453 551 GFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRN 630 (764)
Q Consensus 551 ~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~ 630 (764)
-..|..+|...++|+ .+++++|.+. ++++++||+||+.|+.+++.+........ .
T Consensus 67 d~~Y~~~~~~~~le~----~~a~l~G~~~-----------~~~~~sGt~A~~~a~~~~~~~g~~~~~~~----------~ 121 (467)
T d2v1pa1 67 DEAFSGSRSYYALAE----SVKNIFGYQY-----------TIPTHQGRGAEQIYIPVLIKKREQEKGLD----------R 121 (467)
T ss_dssp CCCSSSCHHHHHHHH----HHHHHTCCSE-----------EEEECSSTTTHHHHHHHHHHHHHHHHCCC----------T
T ss_pred chhhcCCchHHHHHH----HHHHHHCCCE-----------EEECCCCHHHHHHHHHHHhhccceEecCC----------C
Confidence 346778899988886 5688998854 68999999999999999887654332111 1
Q ss_pred ceEEEecCCcchhHHHHHHhCCCceEEEecCC----------CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcc--
Q psy13453 631 KLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDD----------NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTC-- 698 (764)
Q Consensus 631 ~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~----------~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~G-- 698 (764)
.-.+..+...|.....++.+.|..++.++.+. .+.+|+++|++.|++...+. .+++++-...++..|
T Consensus 122 ~~~i~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~-~~~i~~e~~~~~~gg~~ 200 (467)
T d2v1pa1 122 SKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNN-VPYIVATITSNSAGGQP 200 (467)
T ss_dssp TTCEEEESSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGG-CCCEEEESSBCGGGCBC
T ss_pred CcEEEEecccccccHHHHHHcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCccc-cceeeecceeecccccc
Confidence 12355666777888888888999988887752 56899999999998754322 233332222222222
Q ss_pred -ccccHHHHHHHHHhcCCEEEEeccccccccccchhhh-----------hhcCCCcccEEEEcCCccCCCCcCce
Q psy13453 699 -AFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAH-----------LKRGLEYVDSFDFNTHKWLLVNFDCS 761 (764)
Q Consensus 699 -aiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~-----------~l~gie~aDSit~d~HK~l~~P~~~g 761 (764)
..++|++|+++|++||++||+|+|+.+........+. ...-+..+|+++++.||.+++|.+.-
T Consensus 201 ~~~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~gg~ 275 (467)
T d2v1pa1 201 VSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGL 275 (467)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSCEE
T ss_pred CCHHHHHHHHHHHHHcCCEEEEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCCcee
Confidence 4478999999999999999999998665433211110 00112467999999999999987743
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.27 E-value=4.1e-11 Score=128.30 Aligned_cols=177 Identities=10% Similarity=-0.051 Sum_probs=130.5
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
.++.+..+-.++.+.++++++.... ......+||+|||+++..++.... ... .+...++
T Consensus 30 r~~~f~~~~~~~~~~~r~~~~~~~~-----~~~~~i~~t~sgT~a~~~~~~~l~----~~~------------~~gd~vl 88 (382)
T d2bkwa1 30 TSPEFVSIFQRVLKNTRAVFKSAAA-----SKSQPFVLAGSGTLGWDIFASNFI----LSK------------APNKNVL 88 (382)
T ss_dssp TSHHHHHHHHHHHHHHHHHTTCCGG-----GTCEEEEEESCTTHHHHHHHHHHS----CTT------------CSCCEEE
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhcC-----CCCeEEEEeCcHHHHHHHHHHHHH----Hhc------------CCCCceE
Confidence 3678888888999999999985321 012357899999999877765321 110 1122466
Q ss_pred ecCCcchhHH--HHHHhCCCceEEEecCC-CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHh
Q psy13453 636 TSDQSNSSVE--KSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQE 712 (764)
Q Consensus 636 ~S~~aH~Sv~--kAa~~lGl~v~~Vp~d~-~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~ 712 (764)
+....|++.. ..+...|..+..+...+ ....+.+.+++++.+. .+-+|+.+..+|.+|...|+++++++|++
T Consensus 89 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~tg~~~~~~~~~~~~~~ 163 (382)
T d2bkwa1 89 VVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQN-----SYGAVTVTHVDTSTAVLSDLKAISQAIKQ 163 (382)
T ss_dssp EECSSHHHHHHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHS-----CCSEEEEESEETTTTEECCHHHHHHHHHH
T ss_pred EEEechhhhhhhhhccccccccccccccCCCCccchhHHHHHhhhc-----cchheeeeeccccccccccchhhhhhccc
Confidence 6777777753 33555777777665544 4467888888888654 24589999999999999999999999987
Q ss_pred c--CCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 713 Y--NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 713 ~--glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
+ ++++||||+++.+.+..+-.. . .+|.++++.|||++.|.|+|++|
T Consensus 164 ~~~~~~~~vDa~qs~g~~pid~~~---~---giD~~~~s~~K~l~gP~G~g~l~ 211 (382)
T d2bkwa1 164 TSPETFFVVDAVCSIGCEEFEFDE---W---GVDFALTASQKAIGAPAGLSISL 211 (382)
T ss_dssp HCTTSEEEEECTTTTTTSCCCTTT---T---TCSEEEEESSSTTCCCSCEEEEE
T ss_pred cccceeeeeecccccccccccccc---c---CeeEEeecccccCcCCCchhhhh
Confidence 6 499999999999877664211 1 35999999999999999999985
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.26 E-value=4.1e-11 Score=127.50 Aligned_cols=171 Identities=20% Similarity=0.085 Sum_probs=125.6
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
.++.+.++-+++.+.|++++|.|+. ...+||+|||+++..++... ... +..++
T Consensus 45 r~~ef~~i~~~~r~~l~~ll~~~~~--------~~i~~~g~gT~~~~~~~~~~----~~~---------------~~~~~ 97 (377)
T d1vjoa_ 45 LDPAFLALMDEIQSLLRYVWQTENP--------LTIAVSGTGTAAMEATIANA----VEP---------------GDVVL 97 (377)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTCCCS--------CEEEESSCHHHHHHHHHHHH----CCT---------------TCEEE
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCC--------eEEEEcCcHHHHHHHHHHhc----ccc---------------ccccc
Confidence 5788999999999999999999875 35678888999987665432 111 12344
Q ss_pred ecCCcchhH--HHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhc
Q psy13453 636 TSDQSNSSV--EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEY 713 (764)
Q Consensus 636 ~S~~aH~Sv--~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~ 713 (764)
+....|++. ...+...+.....+....+...+.+..+...... .+.+|+.+..+|.+|.+.|+++|+++|+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~tg~~~~i~~i~~~~~~~ 172 (377)
T d1vjoa_ 98 IGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALETH-----RPAILALVHAETSTGARQPLEGVGELCREF 172 (377)
T ss_dssp EEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECCCTTHHHHHHHH
T ss_pred eeeechhhhhhhhhhhhhcccccccccCCCCcccchhhhhhhhcC-----cceeeeeeeeeccceeeechhhhhhhhhhc
Confidence 455566554 3334455666666666555556666655554433 245888999999999999999999999999
Q ss_pred CCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 714 NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 714 glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
|..+|||++++.+....+- +.+ .+|.++++.|||++.|.++|+++
T Consensus 173 g~~~~vDa~~~~g~~~~~~-----~~~-~~d~~~~s~~K~~~gp~g~~~~~ 217 (377)
T d1vjoa_ 173 GTLLLVDTVTSLGGVPIFL-----DAW-GVDLAYSCSQKGLGCSPGASPFT 217 (377)
T ss_dssp TCEEEEECTTTTTTSCCCT-----TTT-TCSEEECCSSSTTCSCSSCEEEE
T ss_pred cceEEEecchhhhhhhhcc-----ccc-ccceeeecccccccCCCEEEEec
Confidence 9999999999876555432 222 45999999999999999999864
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.23 E-value=8.7e-11 Score=125.67 Aligned_cols=171 Identities=14% Similarity=0.067 Sum_probs=130.6
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
.++.+.++-.++.+.|++++|.++. ...+||+|||+++-.++.... .. .-.++
T Consensus 44 r~~ef~~i~~~~r~~L~~ll~~~~~--------~~i~~~gsgT~a~ea~~~~l~----~~---------------~~~vl 96 (388)
T d2ch1a1 44 FHAELFRTMDEVKDGLRYIFQTENR--------ATMCVSGSAHAGMEAMLSNLL----EE---------------GDRVL 96 (388)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCCS--------CEEEESSCHHHHHHHHHHHHC----CT---------------TCEEE
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCC--------eEEEEcCcHHHHHHHHHHHhc----cc---------------ccccc
Confidence 5788899999999999999998652 345677889998765554321 11 11345
Q ss_pred ecCCcchhHHHH--HHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhc
Q psy13453 636 TSDQSNSSVEKS--AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEY 713 (764)
Q Consensus 636 ~S~~aH~Sv~kA--a~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~ 713 (764)
+....|++...+ +...+.....++.+.....+.+..++.+... .+-+|+.+..+|.+|...|+++|+++|+++
T Consensus 97 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~t~tG~~~~~~~i~~~~~~~ 171 (388)
T d2ch1a1 97 IAVNGIWAERAVEMSERYGADVRTIEGPPDRPFSLETLARAIELH-----QPKCLFLTHGDSSSGLLQPLEGVGQICHQH 171 (388)
T ss_dssp EEESSHHHHHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECCCTTHHHHHHHT
T ss_pred ccccccccccchhhhhhhcccccccccccccccchhhhhhhhccC-----Ccceeeeeecccccccccchhhhcchhccc
Confidence 556667665433 5557888888888877778888888776543 245889999999999999999999999999
Q ss_pred CCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 714 NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 714 glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
|..++||++++.+...++- +.+ .+|.+..+.|||++.|.|+|+++
T Consensus 172 ~~~~~vD~~ss~g~~pid~-----~~~-~~d~~~~s~~K~~~gp~G~g~~~ 216 (388)
T d2ch1a1 172 DCLLIVDAVASLCGVPFYM-----DKW-EIDAVYTGAQKVLGAPPGITPIS 216 (388)
T ss_dssp TCEEEEECTTTBTTBCCCT-----TTT-TCCEEECCCC-CCCCCSSCEEEE
T ss_pred cceeeeeeeecccccccch-----hcc-CceEEEEccccccCCCCeEEEEe
Confidence 9999999999887666542 222 45999999999999999999874
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.17 E-value=6.5e-11 Score=126.28 Aligned_cols=162 Identities=15% Similarity=0.120 Sum_probs=124.1
Q ss_pred cCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEE
Q psy13453 555 LSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVA 634 (764)
Q Consensus 555 ~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi 634 (764)
..+|...++|+ ++++++|.+ ..++|++||.|+..|+.+.. ..++-.|
T Consensus 28 ~~G~~v~~~E~----~la~~~g~~-----------~ai~~~sgt~Al~~al~al~------------------~~~gdeV 74 (376)
T d1mdoa_ 28 TTGPKNQELEA----AFCRLTGNQ-----------YAVAVSSATAGMHIALMALG------------------IGEGDEV 74 (376)
T ss_dssp SSSHHHHHHHH----HHHHHHCCS-----------EEEEESCHHHHHHHHHHHTT------------------CCTTCEE
T ss_pred cCCHHHHHHHH----HHHHHHCcC-----------eEEEeCCHHHHHHHHHHHhC------------------CCCCCEE
Confidence 35788888885 788888874 36899999999999886421 1123368
Q ss_pred EecCCcchhHHHHHHhCCCceEEEecCC-CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhc
Q psy13453 635 YTSDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEY 713 (764)
Q Consensus 635 ~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~-~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~ 713 (764)
+++..+|.+...+....|...+.++++. .+.||+++|+++|.+.++ +|+++ ...|..-|+++|.++|++|
T Consensus 75 i~~~~~~~~~~~ai~~~g~~pv~~d~~~~~~~~d~~~l~~~i~~~tk------aIi~~---h~~G~~~~~~~i~~i~~~~ 145 (376)
T d1mdoa_ 75 ITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTK------AIIPV---HYAGAPADLDAIYALGERY 145 (376)
T ss_dssp EEESSSCHHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEE------EECCB---CGGGCCCCHHHHHHHHHHH
T ss_pred EEecccccccccchhccccceeeecccccccCCCHHHHHHhcCCCCe------EEEEe---CCCCCccchhHHHHHHHhc
Confidence 8999999999999999999999999985 588999999999976533 55543 5689889999999999999
Q ss_pred CCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 714 NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 714 glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
|++++.|+|++-+...-.. ..|--....+++.++|++.++-| |++
T Consensus 146 ~i~vIeD~a~a~g~~~~~~----~~g~~g~~~~Sf~~~K~l~~g~G-G~i 190 (376)
T d1mdoa_ 146 GIPVIEDAAHATGTSYKGR----HIGARGTAIFSFHAIKNITCAEG-GIV 190 (376)
T ss_dssp TCCBCEECTTCTTCEETTE----ETTSSSEEEEECCTTSSSCSSSC-EEE
T ss_pred CceEEeccchhccCeeCCe----ecccccCccccCCCcCCCCCCCC-CEE
Confidence 9999999999876543221 22222346777888999976554 544
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.15 E-value=3.5e-10 Score=124.65 Aligned_cols=179 Identities=13% Similarity=0.102 Sum_probs=117.4
Q ss_pred ccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCc
Q psy13453 552 FSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631 (764)
Q Consensus 552 ~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~ 631 (764)
..|..+|...++|+. +++++|.+. ++||++||+||..|+.++++....... .+
T Consensus 69 ~~y~~~~~~~~le~~----~a~l~g~~~-----------~~~~~sGt~A~~~a~~~~~~~g~~~~~------------~~ 121 (465)
T d1ax4a_ 69 EAYAGSRNYYDLKDK----AKELFNYDY-----------IIPAHQGRGAENILFPVLLKYKQKEGK------------AK 121 (465)
T ss_dssp CCSSSCHHHHHHHHH----HHHHHCCCE-----------EEEESSHHHHHHHHHHHHHHHHHHTTC------------CS
T ss_pred hhhccChHHHHHHHH----HHHHHCCCE-----------EEECCCcHHHHHHHHHHHHHHHHhcCC------------CC
Confidence 456778888888864 577788753 689999999999999999876432211 12
Q ss_pred eEEEecCCcchhHHHHHHhCCCceEEEec----------CCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcc-c-
Q psy13453 632 LVAYTSDQSNSSVEKSAIIGDVPVRQLRS----------DDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTC-A- 699 (764)
Q Consensus 632 ~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~----------d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~G-a- 699 (764)
..++.+...|.+........|...+.+++ +..|.+|+++|+++|++.... .+.+++.+..++..| .
T Consensus 122 ~~~i~~~~h~~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~--~~~~~~~~~~~~~~g~~~ 199 (465)
T d1ax4a_ 122 NPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGAD--NIVAIVSTVTCNSAGGQP 199 (465)
T ss_dssp SCEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGG--GEEEEEEESSBTTTTSBC
T ss_pred CeEEeccchhhhhHHHHHHcCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccc--cccceeeccccccCceec
Confidence 22344544455555556667765554432 257899999999999875432 233444444333333 2
Q ss_pred --cccHHHHHHHHHhcCCEEEEeccccccccccch----------hhh-hhcCCCcccEEEEcCCccCCCCcC
Q psy13453 700 --FDNLEELGPICQEYNIWLHVDAAYAGSALLLPE----------YAH-LKRGLEYVDSFDFNTHKWLLVNFD 759 (764)
Q Consensus 700 --iDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~----------~r~-~l~gie~aDSit~d~HK~l~~P~~ 759 (764)
.++|.+|+++|++||++||+|+|+..+...... ... ..+....+|.++++.||.++.|.+
T Consensus 200 ~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~~ 272 (465)
T d1ax4a_ 200 VSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIG 272 (465)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSC
T ss_pred CCHHHHHHHHHHHHHcCCEEEEECcchhhhhcccccccccccccchhhhccccccccceeEeecccCcccccc
Confidence 368999999999999999999998653321110 000 011123479999999999887766
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.06 E-value=1.2e-10 Score=120.00 Aligned_cols=176 Identities=17% Similarity=0.163 Sum_probs=118.9
Q ss_pred CccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccC
Q psy13453 551 GFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRN 630 (764)
Q Consensus 551 ~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~ 630 (764)
...|...|...++|+ ++++++|.+. ++|++|||+||+.|+.+++..
T Consensus 27 ~~~yg~~p~~~~le~----~lA~~~G~~~-----------~~~~~sGt~A~~~al~a~~~~------------------- 72 (343)
T d1m6sa_ 27 DDVYGEDPTINELER----LAAETFGKEA-----------ALFVPSGTMGNQVSIMAHTQR------------------- 72 (343)
T ss_dssp CGGGTCCHHHHHHHH----HHHHHTTCSE-----------EEEESCHHHHHHHHHHHHCCT-------------------
T ss_pred CcccCCCHHHHHHHH----HHHHHHCCCe-----------EEEeCCHHHHHHHHHHHHhcc-------------------
Confidence 345667898888886 6688888753 689999999999998765321
Q ss_pred ceEEEecCCcchhHHHHH---HhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCc-cc---cccH
Q psy13453 631 KLVAYTSDQSNSSVEKSA---IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGT-CA---FDNL 703 (764)
Q Consensus 631 ~~vi~~S~~aH~Sv~kAa---~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~-Ga---iDpl 703 (764)
.-.+++....|++..... ...+..++.++. ..+..|++.+++.|.....+...+..++.+...+.. |. ++++
T Consensus 73 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 151 (343)
T d1m6sa_ 73 GDEVILEADSHIFWYEVGAMAVLSGVMPHPVPG-KNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENI 151 (343)
T ss_dssp TCEEEEETTCHHHHSSTTHHHHHTCCEEEEECE-ETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHH
T ss_pred CCceeccccccceeeecccccccccceeecccc-ccCccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHH
Confidence 123556677777765433 233444555554 467899999999998877666656555555555444 44 4677
Q ss_pred HHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCcee
Q psy13453 704 EELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSA 762 (764)
Q Consensus 704 ~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~ 762 (764)
.+|+++|++||+++|+|+|++++......... .......+.++++.+|.++...+..+
T Consensus 152 ~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~ 209 (343)
T d1m6sa_ 152 KEICTIAKEHGINVHIDGARIFNASIASGVPV-KEYAGYADSVMFCLSKGLCAPVGSVV 209 (343)
T ss_dssp HHHHHHHHHHTCEEEEEETTHHHHHHHHCCCH-HHHHHTCSEEEEESSSTTCCSSCEEE
T ss_pred HHHHHHHHhcCeEEEeccccccccccccccch-hhhccccccccccccccccccccccc
Confidence 78888889999999999999876533211111 11112347888999998887665443
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.05 E-value=9e-10 Score=121.75 Aligned_cols=172 Identities=15% Similarity=0.112 Sum_probs=112.0
Q ss_pred CccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccC
Q psy13453 551 GFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRN 630 (764)
Q Consensus 551 ~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~ 630 (764)
-..|..+|...++|+.+ ++++|.+. +++|++||+||+.++.+.. + +
T Consensus 68 Dd~Y~~dpt~~~lE~~~----a~l~G~e~-----------al~~~SGt~An~~a~~~l~-----~--------------~ 113 (456)
T d1c7ga_ 68 DEAYAGSENFYHLEKTV----KELFGFKH-----------IVPTHQGRGAENLLSQLAI-----K--------------P 113 (456)
T ss_dssp CCCSSSCHHHHHHHHHH----HHHHCCSE-----------EEEESSHHHHHHHHHHHHC-----C--------------T
T ss_pred chhccCCchHHHHHHHH----HHHhCCCe-----------EEECCCHHHHHHHHHHHhc-----C--------------C
Confidence 36788999999999855 77888753 6999999999998887531 1 1
Q ss_pred ceEEEecCCcchhHHHHHHhCCCceEEEecC----------CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcc--
Q psy13453 631 KLVAYTSDQSNSSVEKSAIIGDVPVRQLRSD----------DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTC-- 698 (764)
Q Consensus 631 ~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d----------~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~G-- 698 (764)
.-.|++....+.+. -.....|...+.+.++ .+|.+|+++|++.|++.... .+.+|+.+..++..|
T Consensus 114 Gd~Vi~~~~f~~~~-~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~--~~~~i~~e~~~n~~gG~ 190 (456)
T d1c7ga_ 114 GQYVAGNMYFTTTR-FHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAE--NIAYICLAVTVNLAGGQ 190 (456)
T ss_dssp TEEEEESSCCHHHH-HHHHHTTEEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGG--GEEEEEEESSBTTTTSB
T ss_pred CCeEecCcchHHHH-HHHHHcCceeeeccccccccccccCCccccCCHHHHHHHhhhcCCc--cceeEEeeecccccccc
Confidence 12455443322222 2233355544443331 46789999999999876432 233455555444444
Q ss_pred --ccccHHHHHHHHHhcCCEEEEeccccccccc-cc----hhhh-----hh-cCCCcccEEEEcCCccCCCCcC
Q psy13453 699 --AFDNLEELGPICQEYNIWLHVDAAYAGSALL-LP----EYAH-----LK-RGLEYVDSFDFNTHKWLLVNFD 759 (764)
Q Consensus 699 --aiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~-~~----~~r~-----~l-~gie~aDSit~d~HK~l~~P~~ 759 (764)
..++|.+|+++|++||+.+|+|+|+...... .. .+.. .. .-...+|++++++||.+++|.|
T Consensus 191 ~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~G 264 (456)
T d1c7ga_ 191 PVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIG 264 (456)
T ss_dssp CCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSC
T ss_pred eecHHHHHHHHHHHHHcCCEEEEEcchhhcchhhhcccccccCCCChhhhccccccccccEEEeccccccccce
Confidence 4478999999999999999999997653221 11 1110 00 0123589999999999998876
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.01 E-value=2.1e-09 Score=115.83 Aligned_cols=173 Identities=14% Similarity=0.090 Sum_probs=129.6
Q ss_pred HHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCC
Q psy13453 542 MLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNP 621 (764)
Q Consensus 542 ~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~ 621 (764)
.+...+++.......+|...++|+ .+++++|.+. .++|++||.|+.+|+.+.-
T Consensus 18 ~~~~~l~~g~~~~~~g~~v~~fE~----~~a~~~g~~~-----------~v~~~SGt~Al~lal~~l~------------ 70 (384)
T d1b9ha_ 18 GLVRALEQGQWWRMGGDEVNSFER----EFAAHHGAAH-----------ALAVTNGTHALELALQVMG------------ 70 (384)
T ss_dssp HHHHHHHTSCCBTTTCSHHHHHHH----HHHHHTTCSE-----------EEEESCHHHHHHHHHHHTT------------
T ss_pred HHHHHHHcCCeeecCCHHHHHHHH----HHHHHHCcCe-----------EEEeCCHHHHHHHHHHHcC------------
Confidence 344455554433456888899996 6677888753 6899999999998886431
Q ss_pred CCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecC-CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc
Q psy13453 622 SLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF 700 (764)
Q Consensus 622 ~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d-~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai 700 (764)
..++..|+++..++.+...+....|..++.++++ .++.||++.+++.+.+.++ .| ..+...|..
T Consensus 71 ------~~~gdeVi~p~~t~~a~~~ai~~~g~~p~~~d~~~~~~~~d~~~~~~~i~~~tk------~i---~~~~~~g~~ 135 (384)
T d1b9ha_ 71 ------VGPGTEVIVPAFTFISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTPRTK------VI---MPVHMAGLM 135 (384)
T ss_dssp ------CCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEE------EE---CCBCGGGCC
T ss_pred ------CCCCCEEEEeccccccccccccccccccccccccccccccchhhhccccccccc------cc---ccccccccc
Confidence 1123358899999999999999999999999987 4689999999998866543 33 356778889
Q ss_pred ccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcC
Q psy13453 701 DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD 759 (764)
Q Consensus 701 Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~ 759 (764)
-|+++|.++|++++++++.|+|++-++..-.+.-.. ...+..+++.++|.+.+.-|
T Consensus 136 ~d~~~i~~~~~~~~i~lieD~a~a~ga~~~g~~~g~---~g~~~~~Sf~~~K~i~~g~G 191 (384)
T d1b9ha_ 136 ADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGE---LDSIATFSFQNGKLMTAGEG 191 (384)
T ss_dssp CCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGG---SSSCEEEECCTTSSSCSSSC
T ss_pred cccccchhhhhhhhhhhhhhhceecccccCCEecCc---ccccceeccccccccccccc
Confidence 999999999999999999999998766543222111 23457788888998765443
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.00 E-value=1.1e-09 Score=110.82 Aligned_cols=172 Identities=19% Similarity=0.161 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
..+.+++.+.+++++|.++ ..++||+||||||++++..++. +...+......
T Consensus 34 ~~~~~~lr~~ia~~~g~~~---------~~v~~tsggtean~~a~~~~~~-------------------~~~~~~~~~~~ 85 (340)
T d1svva_ 34 DSHCAKAARLIGELLERPD---------ADVHFISGGTQTNLIACSLALR-------------------PWEAVIATQLG 85 (340)
T ss_dssp SHHHHHHHHHHHHHHTCTT---------SEEEEESCHHHHHHHHHHHHCC-------------------TTEEEEEETTS
T ss_pred CHHHHHHHHHHHHHhCCCc---------ceEEEcCCHHHHHHHHHHHHhh-------------------hcccccccccc
Confidence 4566788999999999876 4789999999999988775422 12345667788
Q ss_pred chhHHHHHHhCCC--ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccHHHHHHHHHhcCC
Q psy13453 641 NSSVEKSAIIGDV--PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLEELGPICQEYNI 715 (764)
Q Consensus 641 H~Sv~kAa~~lGl--~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~eIa~i~~~~gl 715 (764)
|++........+. ....+. ...+..+.+...++..........+..++....+++.|.+ |++..+.++|+++|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 164 (340)
T d1svva_ 86 HISTHETGAIEATGHKVVTAP-CPDGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGL 164 (340)
T ss_dssp HHHHSSTTHHHHTTCCEEEEC-CTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHHTC
T ss_pred ceeeeecccccccceeeeecc-cccccccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhhhcccccccc
Confidence 8887655444332 223322 3345566777777766666656666666666666666665 567778899999999
Q ss_pred EEEEeccccccccccchhhhhhc-CCCcccEEEEcCCccCCCCcCce
Q psy13453 716 WLHVDAAYAGSALLLPEYAHLKR-GLEYVDSFDFNTHKWLLVNFDCS 761 (764)
Q Consensus 716 wLHVDaA~Gg~~l~~~~~r~~l~-gie~aDSit~d~HK~l~~P~~~g 761 (764)
|+|+|+++++..+.......... .....+..++.++|.++.+....
T Consensus 165 ~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (340)
T d1svva_ 165 YLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEAL 211 (340)
T ss_dssp EEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEE
T ss_pred eeeeeccceeeeecccccccccccccccceeeecCCccccccccccc
Confidence 99999999887655432211100 00123788899999877665443
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=98.97 E-value=1e-09 Score=117.05 Aligned_cols=215 Identities=11% Similarity=0.022 Sum_probs=139.2
Q ss_pred eHHHHHhhcCCCCCCeEEecCCCCCccc--HHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc---------C
Q psy13453 23 ESFKATHSLSGTPDQVRLSGLPDSEWLA--YLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS---------N 91 (764)
Q Consensus 23 Sv~KAa~~LGl~~~~v~~Vpvd~~~rmD--~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~---------~ 91 (764)
.+...++..|+.. +.||.+.+...+ .++|+++|+++ +-+++-+..++++|.+.|+++|.+ +
T Consensus 108 ~~~~~~~~~g~~~---~~v~~~~~~~~~~~~~~l~~~i~~~-----t~~v~i~~~~n~tG~~~~~~~I~~l~~~~~~~~~ 179 (381)
T d1elua_ 108 IVQAIAARFGITY---RFFPVAATLNQGDAAAVLANHLGPK-----TRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYP 179 (381)
T ss_dssp HHHHHHHHHCCEE---EEECCGGGSSSSCHHHHHHTTCCTT-----EEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSC
T ss_pred ccccccccccccc---cccccccccccchHHHHHHhhhccc-----ccccccccccccccccchhhHHHHHHhhcccccc
Confidence 3445566678877 889988655443 55666666543 224468888999999999999875 4
Q ss_pred CCceecccc--------------------ccc-----cc-eeeeecCCCcccc--ccc----cccccC----Cc------
Q psy13453 92 GPLKVGGVL--------------------RRV-----YS-SCLVPRGQKSLRT--TVL----FHFLFQ----HW------ 129 (764)
Q Consensus 92 ~wlHVDa~l--------------------~~~-----y~-s~ll~rd~~~l~~--~~s----~~~d~~----d~------ 129 (764)
+++|||+.. .++ .+ ++++.+......- .+. ...... .+
T Consensus 180 ~~~~vD~~~~~g~~~~~~~~~~~D~~~~s~~K~~~~p~G~g~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (381)
T d1elua_ 180 VRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKR 259 (381)
T ss_dssp CEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGG
T ss_pred cccccccccccccccccccccccccccccccccccccchhhHHHhhHHHHHhcCcccccccccccccccccccccccccc
Confidence 788999942 122 11 3444443221110 000 000000 00
Q ss_pred ccCCCC-cccHHHHHHHHHHccHHHH-HHHHHHHHHHHHHHHHHHhcCCCeEEeCC--CCceeEEEEeeccccccccccc
Q psy13453 130 QIPLGR-RFRALKLWMTLRSYGLKGL-QAYLRKHISLAKKFADLVEQDDRFELVCP--PSMGLVCFRLKVRFWDKLDNLF 205 (764)
Q Consensus 130 tle~SR-r~~ALklWatL~~lG~eGy-~~~i~~~i~lA~~l~~~I~~~p~~ell~~--P~l~iV~Fry~P~~~~~~~~~~ 205 (764)
-..+++ -...+.+.+++..+...|. +.++++..++++++.+.|++.|+++++.+ |..++|+|.....
T Consensus 260 ~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~vsf~~~~~--------- 330 (381)
T d1elua_ 260 FEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSP--------- 330 (381)
T ss_dssp GCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEECSS---------
T ss_pred cccccccchhhhhhhhhhhhHHHhcccccchhhhhhHHHHHHHHHhcCCCeEecCCCCccccEEEEEcCCC---------
Confidence 112233 2233466777877777775 45678999999999999999999999864 6788999976321
Q ss_pred cCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 206 GTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 206 ~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
.+ ...+.++|.+.|... ..+..+.++|+|+ +..+|.+||+.+++.|+++
T Consensus 331 ------~~--~~~i~~~L~~~gi~v---~~~~~~~~lRis~-~~~nt~edid~ll~~l~e~ 379 (381)
T d1elua_ 331 ------LG--HRAIVQKLEEQRIYL---RTIADPDCIRACC-HYITDEEEINHLLARLADF 379 (381)
T ss_dssp ------SC--HHHHHHHHHHTTEEC---EEETTTTEEEEEC-CTTCCHHHHHHHHHHHTTC
T ss_pred ------CC--HHHHHHHHHhCCcEE---EecCCCCEEEEec-CCCCCHHHHHHHHHHHHhh
Confidence 01 135778888889642 2345567899975 5678999999999999875
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.97 E-value=1.1e-08 Score=107.67 Aligned_cols=230 Identities=11% Similarity=0.050 Sum_probs=135.0
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCC--CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CC
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLP--DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NG 92 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd--~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~ 92 (764)
.|||+..+++..|... +.||++ .++++|+++|+++|++.++.+...+++-+-+++++|.+.|+++|++ ++
T Consensus 95 ~h~s~~~~~~~~g~~v---~~v~~~~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~l~~I~~ia~~~~i 171 (364)
T d2e7ja1 95 CHYSSYVAAERAGLNI---ALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDV 171 (364)
T ss_dssp CCHHHHHHHHHTTCEE---EEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTC
T ss_pred cccccchHHHhccceE---EEeeeccccccccCHHHHHhhhhhhcccCCceEEEeecCCCCCceeecchhheeccccccc
Confidence 7999999999999987 999997 4789999999999999877665555567889999999999999887 99
Q ss_pred Cceeccccc--------------------cc-c-----ceeeeecCCCcccccccccccc--CCccc-CCCCccc-HHHH
Q psy13453 93 PLKVGGVLR--------------------RV-Y-----SSCLVPRGQKSLRTTVLFHFLF--QHWQI-PLGRRFR-ALKL 142 (764)
Q Consensus 93 wlHVDa~l~--------------------~~-y-----~s~ll~rd~~~l~~~~s~~~d~--~d~tl-e~SRr~~-ALkl 142 (764)
++|||++.. ++ + ++++..++ +.....+.....+ ....+ .+..... ...+
T Consensus 172 ~livD~a~~~g~~~~~~~~~g~D~~~~S~~K~~~~~g~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (364)
T d2e7ja1 172 PLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKE-EWAEIVLRRSEKYKNKEVELLGCTARGATIITL 250 (364)
T ss_dssp CEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECT-TTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHH
T ss_pred hhhccccchhhhhhhcccccccceeeeccccccCCCCCEEEEEECH-HHHHHHHhhccccCcccccccccccchhHHHHH
Confidence 999999641 11 0 12333322 2221111111111 11111 2222211 1222
Q ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCC-CCceeEEEEeeccccccccccccCccCCccHHHHHHHH
Q psy13453 143 WMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCP-PSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYD 221 (764)
Q Consensus 143 WatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~-P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~ 221 (764)
-+.+... ++ +.+..++.++.++++.+.+++. ++..+.+ |.-..+.|...|....-.. ........+.+
T Consensus 251 ~~~l~~~-~~-~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 319 (364)
T d2e7ja1 251 MASFPHV-RE-RIKRWDEEVEKARRFAAEMEKL-GIKQLGDNPHNHDLMFFHAEVLYEISK--------KAKGGRFFLYR 319 (364)
T ss_dssp HHHHHHH-HH-HGGGHHHHHHHHHHHHHHHHHT-TCEEESSSSCCSSEEEEECHHHHHHHH--------HSSSGGGHHHH
T ss_pred HHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHc-CCeecCCCCCCcceEEEeccchHHHHH--------HhhccchHHHH
Confidence 2222221 22 2234556678899999999986 6666654 4344445543321110000 00000123455
Q ss_pred HHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 222 RIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 222 ~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
.+..+|...+ .......+|++ ...+++++++.+++.|+++.++
T Consensus 320 ~l~~~~~~~~---~~g~~~~~~~~--~~~~t~edid~~~~~l~ei~~~ 362 (364)
T d2e7ja1 320 ELKSRKIHGI---KPGLTRYFKLS--TYGLSDEEVDYVLNAFKEIIEK 362 (364)
T ss_dssp HHHHTTEECS---CTTCCSEEEEE--CTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCcee---cCCCcceEEEe--ccCCCHHHHHHHHHHHHHHHHH
Confidence 5666664211 11223456653 4667899999999999998765
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.96 E-value=8.8e-10 Score=118.07 Aligned_cols=157 Identities=21% Similarity=0.215 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEec-CCcc
Q psy13453 563 LEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTS-DQSN 641 (764)
Q Consensus 563 lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S-~~aH 641 (764)
.+.++.+..++.++..+. ...++|+||+++++.++.+. . + ++-+++++ ..+|
T Consensus 51 ~~~~l~~~~~~~~~~~~~--------e~~~~~~~~~~a~~~~l~al-~---~---------------~~~vi~~~~~~~~ 103 (366)
T d2aeua1 51 FAEKVNEYGLKHLGGDEN--------DKCVGFNRTSSAILATILAL-K---P---------------KKVIHYLPELPGH 103 (366)
T ss_dssp HHHHHHHHHHHHHTCCTT--------EEEEEESSHHHHHHHHHHHH-C---C---------------SEEEEECSSSSCC
T ss_pred hHHHHHHHHHHHccCCCc--------cEEEEeCCHHHHHHHHHHHh-C---C---------------CCEEEEecCCCcc
Confidence 445566666676766542 35788999999998877542 1 1 12345555 4689
Q ss_pred hhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccC-CccccccHHHHHHHHHhcCCEEEEe
Q psy13453 642 SSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTT-GTCAFDNLEELGPICQEYNIWLHVD 720 (764)
Q Consensus 642 ~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT-~~GaiDpl~eIa~i~~~~glwLHVD 720 (764)
.|+..++++.|.++ ++.+ |+++|+++|++.++ +|+.+..++ .++.+++|++|+++|++||+|+++|
T Consensus 104 ~~~~~~~~l~g~~~--v~~~-----d~e~l~~~i~~~tk------~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~D 170 (366)
T d2aeua1 104 PSIERSCKIVNAKY--FESD-----KVGEILNKIDKDTL------VIITGSTMDLKVIELENFKKVINTAKNKEAIVFVD 170 (366)
T ss_dssp THHHHHHHHTTCEE--EEES-----CHHHHHTTCCTTEE------EEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEE
T ss_pred hhHHHHHHhcCCeE--ECCC-----CHHHHHHhcCCCce------EEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEe
Confidence 99999999998864 3443 68999988876543 666666544 4667899999999999999999999
Q ss_pred ccccccccccchh-hhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 721 AAYAGSALLLPEY-AHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 721 aA~Gg~~l~~~~~-r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
.||+......... ...-.| +|-++.+.||.++.+ .+|++
T Consensus 171 e~y~~~~~~~~~~~~~~~~~---~di~~~S~sK~~~g~-~~G~i 210 (366)
T d2aeua1 171 DASGARVRLLFNQPPALKLG---ADLVVTSTDKLMEGP-RGGLL 210 (366)
T ss_dssp CTTHHHHHHHTTCCCHHHHT---CSEEEEETTSSSSSC-SCEEE
T ss_pred cCccccccccccCCCHhhcC---ceEEEeccccccccc-ceeEE
Confidence 9998654321111 111123 599999999988754 55654
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=98.95 E-value=8e-09 Score=112.11 Aligned_cols=160 Identities=13% Similarity=0.001 Sum_probs=117.9
Q ss_pred HHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhH
Q psy13453 565 VLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV 644 (764)
Q Consensus 565 ~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv 644 (764)
.++-+.+++++|.+. .+++++|++||+.++.+... ++.+|++.+..|.|+
T Consensus 93 ~~lE~~lA~~~g~e~-----------al~~~SG~~An~~~i~~l~~-------------------~~d~i~~d~~~h~s~ 142 (401)
T d1fc4a_ 93 KELEQKLAAFLGMED-----------AILYSSCFDANGGLFETLLG-------------------AEDAIISDALNHASI 142 (401)
T ss_dssp HHHHHHHHHHHTCSE-----------EEEESCHHHHHHTTHHHHCC-------------------TTCEEEEETTCCHHH
T ss_pred HHHHHHHHHhhcCCc-----------eEEecchhhhhHHHHHHhcC-------------------CCcEEEeCCcchHHH
Confidence 344456678888754 68999999999988763311 134688999999999
Q ss_pred HHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEecccc
Q psy13453 645 EKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYA 724 (764)
Q Consensus 645 ~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~G 724 (764)
..++...+.++..++. .|.+++++.+++..+.+....+|+.-.-....|.+-||++|.++|++||++|+||.|++
T Consensus 143 ~~G~~~~~a~~~~~~~-----~d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~L~~l~~L~~~~~a~LivDeah~ 217 (401)
T d1fc4a_ 143 IDGVRLCKAKRYRYAN-----NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHA 217 (401)
T ss_dssp HHHHHTSCSEEEEECT-----TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTT
T ss_pred HccccccCceEEEEcC-----CChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhhhhHHHHHHhhcCcEEEehhhhc
Confidence 9999998888777653 46888999888877766665555544333456888999999999999999999999999
Q ss_pred ccccccc--hhhhhhcCCCcccEEEEcCCccCCCCcC
Q psy13453 725 GSALLLP--EYAHLKRGLEYVDSFDFNTHKWLLVNFD 759 (764)
Q Consensus 725 g~~l~~~--~~r~~l~gie~aDSit~d~HK~l~~P~~ 759 (764)
++.+-.. -......-...+|-++.++.|.++.+.|
T Consensus 218 ~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg~~G 254 (401)
T d1fc4a_ 218 VGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASG 254 (401)
T ss_dssp TTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSC
T ss_pred cccccCCCCccchhccCCCCCeEEEeecccccccCCc
Confidence 8765321 0112222234679999999999966544
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=98.92 E-value=1.6e-09 Score=111.02 Aligned_cols=222 Identities=12% Similarity=-0.024 Sum_probs=152.9
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEE--E-EeeC--CcccccccCchhhhc----
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMC--S-GYCG--RTLHQDIQSLNAPVS---- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~--V-atAG--TT~~G~iDpi~~ia~---- 90 (764)
.|+|....+.+.++....+..++.+.++.+|++.+++.+.+.......|.. + .+.+ ....+.++++.+++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 166 (345)
T d1v72a1 87 SHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKS 166 (345)
T ss_dssp SHHHHSSTTHHHHHTTSCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHH
T ss_pred cceeeechhhHHHhcCcccccccccccccccHHHhhhhhcccccccccccceeeeeeccccccccccchhhhhHHHHHHh
Confidence 578888777777777777789999999999999999999876654444443 2 3222 223445677777654
Q ss_pred -CCCceecccccc------------ccc-----eeeeecCCCccccc--cc-cc------cccCCcccCCCCcccHHHHH
Q psy13453 91 -NGPLKVGGVLRR------------VYS-----SCLVPRGQKSLRTT--VL-FH------FLFQHWQIPLGRRFRALKLW 143 (764)
Q Consensus 91 -~~wlHVDa~l~~------------~y~-----s~ll~rd~~~l~~~--~s-~~------~d~~d~tle~SRr~~ALklW 143 (764)
++|+|+|+.... .+. .+.+.+........ .. .. ..........+-...+...+
T Consensus 167 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~ 246 (345)
T d1v72a1 167 SSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATEMSYRRKRAGHLSSKMRFLSA 246 (345)
T ss_dssp TTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCSSCEEEEESSGGGHHHHHHHHHHTTCCCSSTHHHHH
T ss_pred cCceeeecccccceeccccccCHHHhhccccccccccCccccccccccccccchhhhhhhccccccccccccchhhHHhh
Confidence 899999995310 000 01111110000000 00 00 00111233445566667778
Q ss_pred HHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHH
Q psy13453 144 MTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRI 223 (764)
Q Consensus 144 atL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L 223 (764)
+.+..+....+.+..++...+++++.+.+.+.++++++.++..++|.|+.. ..+.++|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~~~niv~~~~~----------------------~~~~~~L 304 (345)
T d1v72a1 247 QIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLD----------------------SAMIDAL 304 (345)
T ss_dssp HHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEEC----------------------HHHHHHH
T ss_pred hhHHHHHHhhhhhhccchhhHHHHHHHHHHhcCCcEeccCCCccEEEEEcC----------------------HHHHHHH
Confidence 899999999999999999999999999999999999999999999988642 2467889
Q ss_pred HhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 224 IARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 224 ~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
.++|+.+. +...+...||++ +++.||+||||.+++.|+++
T Consensus 305 ~~~gi~v~--~~~~~~~~lR~~-~~~~~T~edid~~le~lr~a 344 (345)
T d1v72a1 305 LKAGFGFY--HDRWGPNVVRFV-TSFATTAEDVDHLLNQVRLA 344 (345)
T ss_dssp HHTTCBCB--CSSSSTTEEEEE-CCTTCCHHHHHHHHHHHHHT
T ss_pred HHcCCCcc--ccCCCCCEEEEE-CCCCCCHHHHHHHHHHHHHh
Confidence 99998542 233456789996 67999999999999999875
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.91 E-value=1.1e-08 Score=109.31 Aligned_cols=194 Identities=14% Similarity=0.054 Sum_probs=130.9
Q ss_pred HHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhcc
Q psy13453 539 VGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQS 618 (764)
Q Consensus 539 lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~ 618 (764)
+-+.+...++.....|.......++-+.+.+|+.+..+.... .....++|+|++++...++.+..
T Consensus 43 v~~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~------~~~~i~~t~G~~~~l~~~~~~l~--------- 107 (388)
T d1gdea_ 43 IKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEAD------PKTEIMVLLGANQAFLMGLSAFL--------- 107 (388)
T ss_dssp HHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCC------TTTSEEEESSTTHHHHHHHTTTC---------
T ss_pred HHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHHHhhccccCC------ChheeeeccCcchHHHHHHHHhc---------
Confidence 334444445443334544445667777888888876664331 22468899999998877654211
Q ss_pred CCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecC--CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCC
Q psy13453 619 KNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTG 696 (764)
Q Consensus 619 ~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d--~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~ 696 (764)
.++..|++..-++.....++...|.+++.+|++ +++.+|+++|++++++. +.+++.+..++.
T Consensus 108 ----------~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~i~~~~P~NP 171 (388)
T d1gdea_ 108 ----------KDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDK------TRALIINSPCNP 171 (388)
T ss_dssp ----------CTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTT------EEEEEEESSCTT
T ss_pred ----------CCCCEEEECCCCcHHHHHHHHHcCCEEEEeecccccCCCCCHHHHHHhCccC------CeEEEECCCcCC
Confidence 122356677778888889999999999999986 35689999999887543 347777788999
Q ss_pred cccc---ccHHHHHHHHHhcCCEEEEeccccccccccchhhhh--hcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 697 TCAF---DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHL--KRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 697 ~Gai---Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~--l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
||.+ +.+.+|+++|++|++|+.+|.+|+.....-+..... +.+...-.-+.-++.|.++.| +-+|.+
T Consensus 172 tG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~i 244 (388)
T d1gdea_ 172 TGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFV 244 (388)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEE
T ss_pred CCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCccccEEEE
Confidence 9998 678889999999999999999998754322221111 111111124466899988766 555544
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=98.84 E-value=3.6e-08 Score=104.84 Aligned_cols=166 Identities=16% Similarity=0.016 Sum_probs=118.3
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
.++.+..+..++.+.|+++++.+.+ ..+|++|||+++-.++... ... +-.++
T Consensus 27 r~~~f~~i~~~~~~~l~~ll~~~~~---------~i~~~gsgT~a~e~~~~nl----~~~---------------g~~vl 78 (348)
T d1iuga_ 27 RTEAAREVFLKARGLLREAFRTEGE---------VLILTGSGTLAMEALVKNL----FAP---------------GERVL 78 (348)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTCSSE---------EEEEESCHHHHHHHHHHHH----CCT---------------TCEEE
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCC---------EEEEeCchHHHHHHHHHhc----ccc---------------cccce
Confidence 4678889999999999999997542 4788999999865554422 111 11234
Q ss_pred ecCCcchh--HHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhc
Q psy13453 636 TSDQSNSS--VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEY 713 (764)
Q Consensus 636 ~S~~aH~S--v~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~ 713 (764)
+....|++ +.+.+...|..+..+..+..-..+++++ +...+-.|+.+...|.+|.+.|+++|+++|+++
T Consensus 79 v~~~G~f~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~---------~~~~~~~v~~~h~eTstG~~~~i~~i~~~~~~~ 149 (348)
T d1iuga_ 79 VPVYGKFSERFYEIALEAGLVVERLDYPYGDTPRPEDV---------AKEGYAGLLLVHSETSTGALADLPALARAFKEK 149 (348)
T ss_dssp EEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCTTTS---------CCSSCSEEEEESEETTTTEECCHHHHHHHHHHH
T ss_pred eecchHHHHHHHHHHHhcCcccccccccCCCccccccc---------cccCCCeeEEEecchhhhhhccHHHHHHHHHhh
Confidence 44556666 3444666788877777653333343221 122355889999999999999999999999998
Q ss_pred C--CEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceeeC
Q psy13453 714 N--IWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764 (764)
Q Consensus 714 g--lwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l~ 764 (764)
+ .+++||+..+.+....+- ...+ +|.+..+.||+++.|.|.|+++
T Consensus 150 ~~~~l~~vDavss~g~~~i~~---d~~~---iD~~~~~sqK~l~gppG~~~v~ 196 (348)
T d1iuga_ 150 NPEGLVGADMVTSLLVGEVAL---EAMG---VDAAASGSQKGLMCPPGLGFVA 196 (348)
T ss_dssp CTTCEEEEECTTTBTTBCCCS---GGGT---CSEEEEESSSTTCCCSCEEEEE
T ss_pred hccceeechhhhccccccccc---cccc---CCEEEeccccceecCCceeeee
Confidence 5 799999987766554431 1123 4999999999999999999874
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=98.78 E-value=5.4e-08 Score=105.10 Aligned_cols=220 Identities=12% Similarity=0.057 Sum_probs=150.1
Q ss_pred eeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCcee
Q psy13453 22 YESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKV 96 (764)
Q Consensus 22 YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHV 96 (764)
|.+.+.|+--|+.. +.+|+++++++|++.+++++.+. +-+++-+..+..+|.+-||+++++ ++++||
T Consensus 127 ~~~~~~a~~~g~~v---~~~~~~~~g~~~~~~~~~~i~~~-----t~lv~~~~v~~~tG~~~pi~~i~~~~~~~g~~~~v 198 (405)
T d1jf9a_ 127 VPWQMLCARVGAEL---RVIPLNPDGTLQLETLPTLFDEK-----TRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLV 198 (405)
T ss_dssp HHHHHHHHHHTCEE---EEECBCTTSCBCGGGHHHHCCTT-----EEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHcCcEE---EEECCCCCCcCCHHHHHHhccCC-----cEEEEEecCCCcccccCchHHhhhHHHHcCCeeec
Confidence 56777777789876 99999999999999999988764 224468999999999999999987 889999
Q ss_pred cccc--------------------cccc----c-eeeeecCCCcccc---ccc-----cccccCC--------ccc-CCC
Q psy13453 97 GGVL--------------------RRVY----S-SCLVPRGQKSLRT---TVL-----FHFLFQH--------WQI-PLG 134 (764)
Q Consensus 97 Da~l--------------------~~~y----~-s~ll~rd~~~l~~---~~s-----~~~d~~d--------~tl-e~S 134 (764)
||.. .+++ + ++++++.. .+.. ... ...+..+ ..+ .|+
T Consensus 199 D~~q~~g~~~id~~~~~~D~~~~s~hK~~Gp~G~g~l~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT 277 (405)
T d1jf9a_ 199 DGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEA-LLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGT 277 (405)
T ss_dssp ECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCSSCEEEEECHH-HHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSS
T ss_pred ccceeccccccchhhcCCceeeccccccccCCCceeeeechh-hhcccCcccccccccCccccccccccccchhhhcCCC
Confidence 9942 1222 1 34555432 1111 000 0001111 111 245
Q ss_pred CcccH-HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC-CceeEEEEeeccccccccccccCccCCc
Q psy13453 135 RRFRA-LKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPP-SMGLVCFRLKVRFWDKLDNLFGTISFGD 212 (764)
Q Consensus 135 Rr~~A-LklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P-~l~iV~Fry~P~~~~~~~~~~~~~~~~~ 212 (764)
+...+ +.+-++++++-..|+..+.++...+++++.+.++..+...+..+. ..++++|.... .
T Consensus 278 ~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~~l~~~~~~~~~~~~~r~~ivsf~~~~----------------~ 341 (405)
T d1jf9a_ 278 PNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGK----------------H 341 (405)
T ss_dssp CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEEEETT----------------C
T ss_pred CcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhhhhcCCcccccCCcCcCcEEEEEcCC----------------C
Confidence 53333 466777787777788888888899999999999999888887653 36789997631 1
Q ss_pred cHHHHHHHHHHHhcCcEEEEece--------eCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 213 NDLNKAVYDRIIARKVIYIVKGS--------FQDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 213 d~~n~~L~~~L~~~G~~~vs~t~--------l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
+ ...+.+.|.+.|...-+... .+-.-++|++ .+..+|++||+.+++.|+++.+.
T Consensus 342 ~--~~~~~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~iRiS-~~~ynt~eDid~l~~~l~~i~r~ 403 (405)
T d1jf9a_ 342 H--AYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRAS-LAMYNTHEEVDRLVTGLQRIHRL 403 (405)
T ss_dssp C--HHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEE-CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred C--HHHHHHHHHHCCcEEEccchhhhhHHHhcCCCCEEEEE-CCCCCCHHHHHHHHHHHHHHHHh
Confidence 1 13567777788864332211 1223579996 55778899999999999988764
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=98.77 E-value=6.2e-08 Score=103.94 Aligned_cols=193 Identities=9% Similarity=0.035 Sum_probs=129.0
Q ss_pred HHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhcc
Q psy13453 539 VGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQS 618 (764)
Q Consensus 539 lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~ 618 (764)
+-+.+...+......|.......++=+.+.+|+.+..|++-+ ....++|+|+++++..++.+. ..
T Consensus 48 v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~-------~~~i~it~G~~~al~~~~~~~----~~---- 112 (388)
T d1j32a_ 48 IVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYG-------ADNILVTNGGKQSIFNLMLAM----IE---- 112 (388)
T ss_dssp HHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCC-------GGGEEEESHHHHHHHHHHHHH----CC----
T ss_pred HHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcccCCC-------CceEEEcCCHHHHHHHHHHHH----hC----
Confidence 334455444433334555555556667778899888877532 246889999999977765432 11
Q ss_pred CCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecC--CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCC
Q psy13453 619 KNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTG 696 (764)
Q Consensus 619 ~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d--~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~ 696 (764)
++..|++.+-+.......+...|..++.++.+ +++.+|+++|++++++. +.+++.+..++.
T Consensus 113 -----------~gd~Vlv~~P~y~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~~~~------~~~~~~~~P~NP 175 (388)
T d1j32a_ 113 -----------PGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPK------TKLLVFNTPSNP 175 (388)
T ss_dssp -----------TTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTT------EEEEEEESSCTT
T ss_pred -----------CCCEEEEcCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCCCC------CeEEEECCCCCC
Confidence 12246777777788888888899988888876 35679999999987653 336777778999
Q ss_pred cccc---ccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCc---ccEEEEcCCccCCCC-cCceee
Q psy13453 697 TCAF---DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY---VDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 697 ~Gai---Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~---aDSit~d~HK~l~~P-~~~g~l 763 (764)
||.+ +.+++|+++|+++|+|+.+|-+|+....-.+.+.....-.+. -.-+..++.|.++.| .=+|.+
T Consensus 176 TG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~GlRvG~~ 249 (388)
T d1j32a_ 176 TGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFL 249 (388)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEE
T ss_pred CCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhhhcchhHeEEE
Confidence 9988 567778888999999999999997654433222211111100 124567899988766 335543
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=98.76 E-value=4.9e-08 Score=106.16 Aligned_cols=180 Identities=14% Similarity=0.126 Sum_probs=125.6
Q ss_pred hHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecC
Q psy13453 559 ACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSD 638 (764)
Q Consensus 559 ~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~ 638 (764)
...++=+.+.+|+.+.+|..-.. .....++|+|+++++..++.+. .. +...|++..
T Consensus 84 G~~~LR~aiA~~l~~~~~~~~~~-----~~e~Ivit~G~~~al~~~~~~l----~~---------------~Gd~Vlv~~ 139 (428)
T d1iaya_ 84 GLPEFRKAIAKFMEKTRGGRVRF-----DPERVVMAGGATGANETIIFCL----AD---------------PGDAFLVPS 139 (428)
T ss_dssp CCHHHHHHHHHHHHHHTTTCSCC-----CTTSCEEEEHHHHHHHHHHHHH----CC---------------TTCEEEEES
T ss_pred chHHHHHHHHHHHHHHhCCCCCC-----ChhhEEEcCCHHHHHHHHHHHh----CC---------------CCCEEEEcc
Confidence 34567777889999988754211 1236789999999987766532 11 122466777
Q ss_pred CcchhHHHHHHh-CCCceEEEecC--CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc---cHHHHHHHHHh
Q psy13453 639 QSNSSVEKSAII-GDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD---NLEELGPICQE 712 (764)
Q Consensus 639 ~aH~Sv~kAa~~-lGl~v~~Vp~d--~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD---pl~eIa~i~~~ 712 (764)
-++.+....+.. .|++++.|+++ +++.+|+++++.+++...+.+..+.+|+.+..++.+|.+- .+++|+++|++
T Consensus 140 P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~ 219 (428)
T d1iaya_ 140 PYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQ 219 (428)
T ss_dssp SCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHhcCCeEEEeecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeecc
Confidence 788888777765 48899999887 4578999999999988777777788888899999999774 57889999999
Q ss_pred cCCEEEEeccccccccccchhhh---hhc----CCC--cccEEEEcCCccCCCC-cCcee
Q psy13453 713 YNIWLHVDAAYAGSALLLPEYAH---LKR----GLE--YVDSFDFNTHKWLLVN-FDCSA 762 (764)
Q Consensus 713 ~glwLHVDaA~Gg~~l~~~~~r~---~l~----gie--~aDSit~d~HK~l~~P-~~~g~ 762 (764)
||+|+++|.+|+....-.+++.. ... ... .--.+..++.|.++.| +-+|.
T Consensus 220 ~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~ 279 (428)
T d1iaya_ 220 HNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGI 279 (428)
T ss_dssp TTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEE
T ss_pred CcEEEEecccccccccCcccccccccccchhhccccccceEEEEecCCCcccCCCccccc
Confidence 99999999999865432221110 000 000 0125678999977655 33443
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=98.74 E-value=1e-07 Score=102.48 Aligned_cols=158 Identities=15% Similarity=0.036 Sum_probs=114.8
Q ss_pred chHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEec
Q psy13453 558 PACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTS 637 (764)
Q Consensus 558 p~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S 637 (764)
+...++| +.+++++|.+. .+++++|++||+.++.+.. .+...|++.
T Consensus 83 ~~~~~lE----~~LA~~~g~e~-----------al~~~SG~~an~~~i~al~-------------------~~~d~v~~d 128 (383)
T d1bs0a_ 83 VVHQALE----EELAEWLGYSR-----------ALLFISGFAANQAVIAAMM-------------------AKEDRIAAD 128 (383)
T ss_dssp HHHHHHH----HHHHHHHTCSE-----------EEEESCHHHHHHHHHHHHC-------------------CTTCEEEEE
T ss_pred hHHHHHH----HHHHHhcCCCc-----------eEEecccchhhHHHHHhhc-------------------CCCceEEee
Confidence 4445555 46778888754 6888999999988876431 123468999
Q ss_pred CCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEE
Q psy13453 638 DQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWL 717 (764)
Q Consensus 638 ~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwL 717 (764)
+..|.|+..+++..+..++..+- -|+++|++.+.+... ...+|+.-.-....|.+-|+++|.++|++||++|
T Consensus 129 ~~~h~si~~g~~~~~~~~~~~~h-----nd~~~le~~l~~~~~---~~~~vv~e~v~s~~G~i~pl~~l~~l~~~~~~~l 200 (383)
T d1bs0a_ 129 RLSHASLLEAASLSPSQLRRFAH-----NDVTHLARLLASPCP---GQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWL 200 (383)
T ss_dssp TTCCHHHHHHHHTSSSEEEEECT-----TCHHHHHHHHHSCCS---SCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEE
T ss_pred ccccHHHhhccccCCCcceEecc-----hHHHHHHHHhcccCC---CceEEEecCCCCCCCcccchhHHHHHHHhcCcEE
Confidence 99999999999998888877764 468999999876433 2345555555566799999999999999999999
Q ss_pred EEeccccccccccchhh--hhhcCCCcccEEEEcCCccCCCCcC
Q psy13453 718 HVDAAYAGSALLLPEYA--HLKRGLEYVDSFDFNTHKWLLVNFD 759 (764)
Q Consensus 718 HVDaA~Gg~~l~~~~~r--~~l~gie~aDSit~d~HK~l~~P~~ 759 (764)
+||.||+.+++--. .+ ....++ ..|.+...+-|.++.+-+
T Consensus 201 ivDeah~~gv~G~~-g~G~~~~~~~-~~~~~~~t~~ka~g~~Gg 242 (383)
T d1bs0a_ 201 MVDDAHGTGVIGEQ-GRGSCWLQKV-KPELLVVTFGKGFGVSGA 242 (383)
T ss_dssp EEECTTTTTTSSGG-GCCHHHHTTC-CCSEEEEESSSTTSSCCE
T ss_pred EeecceeeeecCCc-ccchHHHcCC-cccccccccccccccccc
Confidence 99999998765322 11 112233 456677788898876643
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=98.74 E-value=9.5e-08 Score=102.01 Aligned_cols=192 Identities=14% Similarity=0.063 Sum_probs=130.3
Q ss_pred HHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhcc
Q psy13453 539 VGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQS 618 (764)
Q Consensus 539 lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~ 618 (764)
+-+.+...+......|.......++-+.+.+|+.+..|++-+ ....++|+|+++++..++.+. ..
T Consensus 49 i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~-------~~~i~it~G~~~al~~~~~~l----~~---- 113 (382)
T d1b5pa_ 49 VKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVT-------PEETIVTVGGSQALFNLFQAI----LD---- 113 (382)
T ss_dssp HHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCC-------GGGEEEESHHHHHHHHHHHHH----CC----
T ss_pred HHHHHHHHHhcCCcCCCCCCCCHHHHHHHHhhhhhhcccccc-------cccceecCCHHHHHHHHHHHh----CC----
Confidence 344455555544455665556677888888999888776432 246789999999876665532 11
Q ss_pred CCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecC--CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCC
Q psy13453 619 KNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTG 696 (764)
Q Consensus 619 ~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d--~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~ 696 (764)
+.-.|++..-+......+++..|..++.||.+ +++.+|+++|++++.+. +.+++.+..++.
T Consensus 114 -----------~gd~vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~------~~~i~~~~P~NP 176 (382)
T d1b5pa_ 114 -----------PGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPR------TKALVVNSPNNP 176 (382)
T ss_dssp -----------TTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTT------EEEEEEESSCTT
T ss_pred -----------CCCEEEECCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCCCC------CeEEEECCCCCC
Confidence 11246666667777788899999999999986 34688999999887543 336667778999
Q ss_pred cccc---ccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC-cCceee
Q psy13453 697 TCAF---DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSAM 763 (764)
Q Consensus 697 ~Gai---Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~l 763 (764)
||.+ +.+++|+++|++||+|+..|-+|+....-.+........-++ --+..++-|.++.| .-+|.+
T Consensus 177 TG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~i~~~s~SK~~~~~GlR~G~~ 246 (382)
T d1b5pa_ 177 TGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEH-TLTVNGAAKAFAMTGWRIGYA 246 (382)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTT-EEEEEESTTTTTCGGGCCEEE
T ss_pred cchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHcCCCC-EEEEecchhhccCcHhheEEE
Confidence 9988 568888999999999999999998654322221111111122 23445889988766 455554
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=98.72 E-value=2.8e-09 Score=112.87 Aligned_cols=195 Identities=8% Similarity=-0.074 Sum_probs=127.6
Q ss_pred ccccccCCCCChH-HHHHHHHHHhhc---ccCcccc---CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCC
Q psy13453 524 QFNAYFPTGSSYP-SIVGDMLSGAFG---LIGFSWL---SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQST 596 (764)
Q Consensus 524 ~~~~~~~~~~~~~-~~lad~l~~~lN---~n~~~~~---~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsG 596 (764)
|-|+|-|++...+ .++..+-...+| .+....+ -++.+.++-+++++.|+++||.+++ ...+|++|
T Consensus 3 ~~~~F~pGP~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~--------~~i~~~~g 74 (361)
T d2c0ra1 3 RAYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTG--------YKVLFIQG 74 (361)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSS--------EEEEEESS
T ss_pred CCcccCCCCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCC--------CEEEEECC
Confidence 5566777666544 444444444433 3333222 3689999999999999999999864 25688888
Q ss_pred hHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchh--HHHHHHhCCCceEEEecCCCCcccHHHHHHH
Q psy13453 597 ASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSS--VEKSAIIGDVPVRQLRSDDNGVLRGDALLTA 674 (764)
Q Consensus 597 gTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~S--v~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~ 674 (764)
++.+++.++.. ..... .+.++.++ ..++. +.+.+...|..+..++.+.....+++.+++.
T Consensus 75 s~t~~~ea~~~---~l~~~--------------~~~~l~~~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 136 (361)
T d2c0ra1 75 GASTQFAMIPM---NFLKE--------------GQTANYVM-TGSWASKALKEAKLIGDTHVAASSEASNYMTLPKLQEI 136 (361)
T ss_dssp HHHHHHHHHHH---HHCCT--------------TCEEEEEE-CSHHHHHHHHHHHHHSCEEEEEECGGGTTCSCCCGGGC
T ss_pred CchHHHHHHHh---ccccC--------------CCceEEEe-echhhhhhhhhhhhcCceeeeeccccccccchhhhhhh
Confidence 88877655432 21111 01122222 22222 4455666788888888887788888887765
Q ss_pred HHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccC
Q psy13453 675 VKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWL 754 (764)
Q Consensus 675 I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l 754 (764)
+..+ . + +..++.+|...|+.+|.++|+++|+.++|||+++.+....+-. ..|-..+..||.+
T Consensus 137 ~~~~------~-~---~~v~~~tg~~~~~~~i~~~~~~~~al~~vDavss~g~~~id~~--------~~di~~~s~~k~~ 198 (361)
T d2c0ra1 137 QLQD------N-A---AYLHLTSNETIEGAQFKAFPDTGSVPLIGDMSSDILSRPFDLN--------QFGLVYAGAQKNL 198 (361)
T ss_dssp CCCT------T-E---EEEEEESEETTTTEECSSCCCCTTSCEEEECTTTTTSSCCCGG--------GCSEEEEETTTTT
T ss_pred cccC------c-c---eEEEEecccceecceEEEeeccCCceEEEEeeccccccccccc--------cceeEEEeccccc
Confidence 5433 1 1 2234567888889999999999999999999999887766532 2256667789988
Q ss_pred CCCcCcee
Q psy13453 755 LVNFDCSA 762 (764)
Q Consensus 755 ~~P~~~g~ 762 (764)
+.|-+.++
T Consensus 199 ~~~~~~~~ 206 (361)
T d2c0ra1 199 GPSGVTVV 206 (361)
T ss_dssp CCSSCEEE
T ss_pred ccccCcEE
Confidence 86655443
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=98.71 E-value=1.5e-08 Score=108.27 Aligned_cols=167 Identities=13% Similarity=0.101 Sum_probs=124.8
Q ss_pred cccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCce
Q psy13453 553 SWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKL 632 (764)
Q Consensus 553 ~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~ 632 (764)
.+..+|...++|+ .+++.+|... .+++++||.|+.+|+.+...+. ..+.
T Consensus 26 ~~~~G~~v~~fE~----~~~~~~g~k~-----------ai~~~Sgt~Al~~al~al~~~~----------------~~~~ 74 (371)
T d2fnua1 26 QLTQGKRSLLFEE----ALCEFLGVKH-----------ALVFNSATSALLTLYRNFSEFS----------------ADRN 74 (371)
T ss_dssp CCSSSHHHHHHHH----HHHHHHTCSE-----------EEEESCHHHHHHHHHHHSSCCC----------------TTSC
T ss_pred CccCCHHHHHHHH----HHHHHHCcCe-----------EEEEecHHHHHHHHHHHhcccC----------------CCCC
Confidence 3446888888996 6778888753 6899999999988887431110 0123
Q ss_pred EEEecCCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHh
Q psy13453 633 VAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQE 712 (764)
Q Consensus 633 vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~ 712 (764)
.|+++..++.++.-|....|...+.+++|.+..++.+++++++.+. +-+|+++ ...|..-|+++|.++|++
T Consensus 75 eVi~p~~t~~a~~~ai~~~G~~pv~vDi~~~~~~~~~~~~~~~~~~------t~avi~v---h~~G~~~~~~~i~~~~~~ 145 (371)
T d2fnua1 75 EIITTPISFVATANMLLESGYTPVFAGIKNDGNIDELALEKLINER------TKAIVSV---DYAGKSVEVESVQKLCKK 145 (371)
T ss_dssp EEEECSSSCTHHHHHHHHTTCEEEECCBCTTSSBCGGGSGGGCCTT------EEEEEEE---CGGGCCCCHHHHHHHHHH
T ss_pred eeecccccccccceeeeccCcccccccccccccccchhhhhhccch------hhccccc---cccccccccccccccccc
Confidence 5888999999999999999999999999988888888877766544 3355544 578999999999999999
Q ss_pred cCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 713 YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 713 ~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
+|++++-|+|++-++....+.- .....+..+++.+.|.+.+. +-|++
T Consensus 146 ~~i~lIEDaaqa~Ga~~~~~~~---G~~g~~~~~Sf~~~K~l~~g-~GG~i 192 (371)
T d2fnua1 146 HSLSFLSDSSHALGSEYQNKKV---GGFALASVFSFHAIKPITTA-EGGAV 192 (371)
T ss_dssp HTCEEEEECTTCTTCEETTEET---TSSSSEEEEECCTTSSSCCS-SCEEE
T ss_pred cchhhccchhhccCceeccccC---Cccccccccccccccccccc-cceEE
Confidence 9999999999988765433222 22345678888889988654 33443
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=98.69 E-value=1.5e-07 Score=102.38 Aligned_cols=175 Identities=14% Similarity=0.141 Sum_probs=123.6
Q ss_pred hHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecC
Q psy13453 559 ACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSD 638 (764)
Q Consensus 559 ~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~ 638 (764)
...++=+.+.+|+.+.+|..-.. .+...++|+|+|+++..++.+.. . +.-.|++.+
T Consensus 85 G~~~LR~aiA~~l~~~~~~~~~~-----~pe~I~it~G~~~al~~~~~~l~----~---------------pGd~Vlv~~ 140 (431)
T d1m7ya_ 85 GLPAFKKAMVDFMAEIRGNKVTF-----DPNHLVLTAGATSANETFIFCLA----D---------------PGEAVLIPT 140 (431)
T ss_dssp CCHHHHHHHHHHHHHHTTTSSCC-----CGGGEEEEEHHHHHHHHHHHHHC----C---------------TTCEEEEEE
T ss_pred CcHHHHHHHHHHHHHHhCCCCCC-----CcceEEECCCHHHHHHHHHHHhc----C---------------CCCEEEEeC
Confidence 34456667888999988753211 12468899999999877665421 1 122466777
Q ss_pred CcchhHHHHHHh-CCCceEEEecCC--CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccHHHHHHHHHh
Q psy13453 639 QSNSSVEKSAII-GDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLEELGPICQE 712 (764)
Q Consensus 639 ~aH~Sv~kAa~~-lGl~v~~Vp~d~--~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~eIa~i~~~ 712 (764)
-.+......+.. .|+.++.|++++ .+.+|++++++.+.+..+.+..+.+|+.+..++.+|.+ +.+++|+++|++
T Consensus 141 P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~ 220 (431)
T d1m7ya_ 141 PYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVED 220 (431)
T ss_dssp SCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHhcCceeccccccchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccc
Confidence 777777777765 578888888874 46799999999999988888888899999999999988 568888999999
Q ss_pred cCCEEEEeccccccccccchhhhh---hcC--C----Ccc--cEEEEcCCccCCCC
Q psy13453 713 YNIWLHVDAAYAGSALLLPEYAHL---KRG--L----EYV--DSFDFNTHKWLLVN 757 (764)
Q Consensus 713 ~glwLHVDaA~Gg~~l~~~~~r~~---l~g--i----e~a--DSit~d~HK~l~~P 757 (764)
||+|+++|.+|+....-.+.+... ... . ... --+..++.|.++.|
T Consensus 221 ~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~ 276 (431)
T d1m7ya_ 221 KGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLP 276 (431)
T ss_dssp HTCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCG
T ss_pred cCcceeecccccccccCCCCCCCHHHHhhhcccccccccCceEEEEecCcccccCC
Confidence 999999999998754322211111 000 0 001 14566899998866
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=98.69 E-value=4.9e-08 Score=103.46 Aligned_cols=128 Identities=17% Similarity=0.140 Sum_probs=98.8
Q ss_pred HHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHH
Q psy13453 567 VMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEK 646 (764)
Q Consensus 567 v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~k 646 (764)
.++.+++.++.+++ ..++|+|+|+++..++.+. .. +.-.|+++.-+|.....
T Consensus 66 lr~aiA~~~~~~~~---------~Iiit~G~~~al~~~~~~l----~~---------------~~d~v~~~~p~~~~~~~ 117 (368)
T d1v2da_ 66 LREALAEEFAVEPE---------SVVVTSGATEALYVLLQSL----VG---------------PGDEVVVLEPFFDVYLP 117 (368)
T ss_dssp HHHHHHHHHTSCGG---------GEEEESSHHHHHHHHHHHH----CC---------------TTCEEEEEESCCTTHHH
T ss_pred HHHHHHhhcccCCc---------ceeeccchHHHHHHHhhcc----cc---------------ccccccccCCcchhhhh
Confidence 34456667788763 6899999999987776542 11 12246777778888888
Q ss_pred HHHhCCCceEEEecC---CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc---cHHHHHHHHHhcCCEEEEe
Q psy13453 647 SAIIGDVPVRQLRSD---DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD---NLEELGPICQEYNIWLHVD 720 (764)
Q Consensus 647 Aa~~lGl~v~~Vp~d---~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD---pl~eIa~i~~~~glwLHVD 720 (764)
.+...|.+++.++.+ +.+.+|++.|++++++.. .+|+.+..++.||.+- .+++|+++|++||+|+++|
T Consensus 118 ~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~------~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D 191 (368)
T d1v2da_ 118 DAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRT------RALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISD 191 (368)
T ss_dssp HHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTTE------EEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHhcCCccceeccccccccccCCHHHHHHhhccCc------eEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeec
Confidence 999999988888774 467899999999886643 3677788899999985 5888999999999999999
Q ss_pred cccccccc
Q psy13453 721 AAYAGSAL 728 (764)
Q Consensus 721 aA~Gg~~l 728 (764)
.+|+....
T Consensus 192 ~~~~~~~~ 199 (368)
T d1v2da_ 192 EVYDELYY 199 (368)
T ss_dssp CTTTTCBS
T ss_pred hhhhhhcc
Confidence 99886543
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=98.67 E-value=2.2e-07 Score=98.07 Aligned_cols=143 Identities=8% Similarity=-0.017 Sum_probs=105.8
Q ss_pred cccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCce
Q psy13453 553 SWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKL 632 (764)
Q Consensus 553 ~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~ 632 (764)
.|..... .++.+.+.+|+.+.+|++-+ ....++|+|+++++..++.+. .. +..
T Consensus 31 ~Y~~~~g-~~lr~~ia~~~~~~~g~~~~-------~~~i~it~G~~~~l~~~~~~l----~~---------------~gd 83 (361)
T d1d2fa_ 31 GYSRWKN-DEFLAAIAHWFSTQHYTAID-------SQTVVYGPSVIYMVSELIRQW----SE---------------TGE 83 (361)
T ss_dssp CCCCSCC-HHHHHHHHHHHHHHSCCCCC-------GGGEEEESCHHHHHHHHHHHS----SC---------------TTC
T ss_pred CCCCCCC-HHHHHHHHHHHHHHhCCCCC-------cceEEEeCCHHHHHHHHhhhc----cc---------------ccc
Confidence 3443333 46777788999999887542 246899999999875554432 11 122
Q ss_pred EEEecCCcchhHHHHHHhCCCceEEEecC---CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc---cHHHH
Q psy13453 633 VAYTSDQSNSSVEKSAIIGDVPVRQLRSD---DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD---NLEEL 706 (764)
Q Consensus 633 vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d---~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD---pl~eI 706 (764)
.|++.+-.|.....++...|.+++.++.+ +++.+|++.+++.+.+. .+-+|+.+..++.||.+= .+.+|
T Consensus 84 ~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~-----~~~~i~l~~p~NPTG~~~s~~~~~~i 158 (361)
T d1d2fa_ 84 GVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKP-----ECKIMLLCSPQNPTGKVWTCDELEIM 158 (361)
T ss_dssp EEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTST-----TEEEEEEESSCTTTCCCCCTTHHHHH
T ss_pred ccccccccccchhHHHHhhcceEEeecccccccccccccccchhhcccC-----CceeEEecccccccccccchhhhhhh
Confidence 46677778888888888999998888875 44579999999988543 244667777899999764 58899
Q ss_pred HHHHHhcCCEEEEeccccccc
Q psy13453 707 GPICQEYNIWLHVDAAYAGSA 727 (764)
Q Consensus 707 a~i~~~~glwLHVDaA~Gg~~ 727 (764)
+++|+++|+|+++|.+|....
T Consensus 159 ~~~~~~~~~~lI~De~y~~~~ 179 (361)
T d1d2fa_ 159 ADLCERHGVRVISDEIHMDMV 179 (361)
T ss_dssp HHHHHHTTCEEEEECTTTTCB
T ss_pred hhhhhhhheeeeecccccccc
Confidence 999999999999999998653
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=98.67 E-value=2e-07 Score=99.92 Aligned_cols=183 Identities=14% Similarity=0.057 Sum_probs=123.2
Q ss_pred cccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCce
Q psy13453 553 SWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKL 632 (764)
Q Consensus 553 ~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~ 632 (764)
.|.......++.+.+.+|+.+.+|++-+ ....++|+|+++++..++.+.. . +..
T Consensus 66 ~Y~~~~G~~~lR~aia~~l~~~~g~~~~-------~~~I~it~G~~~al~~~~~~l~----~---------------~gd 119 (403)
T d1wsta1 66 QYGTTKGFTPLRLALARWMEKRYDIPMS-------KVEIMTVAGSQQALDLIGRVFL----N---------------PGD 119 (403)
T ss_dssp SCCCSSCCHHHHHHHHHHHHHHHCCCCT-------TCEEEEESSHHHHHHHHHHHHC----C---------------TTC
T ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCCC-------hHHeeecccchHHHHHHHHHHh----h---------------cCC
Confidence 4555556777888899999998887532 2468999999999877665421 1 122
Q ss_pred EEEecCCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhc-CCCceEEEEeeccCCcccc---ccHHHHHH
Q psy13453 633 VAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAK-GLIPCCLIATLGTTGTCAF---DNLEELGP 708 (764)
Q Consensus 633 vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~-G~~p~~VvataGTT~~Gai---Dpl~eIa~ 708 (764)
.|++.+-++......+..+|.+++.||.++++ .+...+........++ .....+++.+..++.||.+ +.+.+|++
T Consensus 120 ~v~~~~P~y~~~~~~~~~~g~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~ 198 (403)
T d1wsta1 120 PIVVEAPTYLAAIQAFKYYDPEFISIPLDDKG-MRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLE 198 (403)
T ss_dssp EEEEEESCCHHHHHHHHTTCCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHH
T ss_pred ccccCCCcchhhhHHHhhccccceeEeecccC-CccccccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHH
Confidence 46777888999999999999999999998654 3343444444333333 3345667777788889977 56678888
Q ss_pred HHHhcCCEEEEeccccccccccchhhh--hhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 709 ICQEYNIWLHVDAAYAGSALLLPEYAH--LKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 709 i~~~~glwLHVDaA~Gg~~l~~~~~r~--~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
+|++|++|++.|.+|+....-...... .....+ -.-+.-+++|+++.-.-+|.+
T Consensus 199 ~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~-~~i~~~S~SK~~~~G~RiG~~ 254 (403)
T d1wsta1 199 LANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYG-RVIYLGTFSKILAPGFRIGWV 254 (403)
T ss_dssp HHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSS-CEEEEEESTTTTCGGGCCEEE
T ss_pred HHHhcCceeccccchhheecCCCCCCcccccCCCC-cEEEEccccceecCccccccc
Confidence 999999999999999864332211111 111221 234567999998644666654
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=98.61 E-value=2.3e-07 Score=100.14 Aligned_cols=220 Identities=9% Similarity=0.010 Sum_probs=146.6
Q ss_pred eeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCcee
Q psy13453 22 YESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKV 96 (764)
Q Consensus 22 YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHV 96 (764)
|.+.+++.-.|+.. +.+|++.++..|++++++++++++ -+++-+.-+..+|.+-|++++++ ++++||
T Consensus 127 ~~~~~~~~~~g~~v---~~~~~~~~~~~~~~~l~~~~~~~t-----~lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~iv 198 (408)
T d1t3ia_ 127 VPWQMVAAKTGAVL---KFVQLDEQESFDLEHFKTLLSEKT-----KLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLV 198 (408)
T ss_dssp HHHHHHHHHHCCEE---EEECBCTTSSBCHHHHHHHCCTTE-----EEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEE
T ss_pred hhhhhhhhccCceE---eeeeccccccccHHHhhhccCCCc-----eEEEEecccccccccCcHHHHhhhhhccCceeee
Confidence 66778888889887 999999999999999999987642 24457788999999999999886 999999
Q ss_pred cccc--------------------cccc----c-eeeeecCCCcccc--cc----c------cccccC--Cccc-CCCCc
Q psy13453 97 GGVL--------------------RRVY----S-SCLVPRGQKSLRT--TV----L------FHFLFQ--HWQI-PLGRR 136 (764)
Q Consensus 97 Da~l--------------------~~~y----~-s~ll~rd~~~l~~--~~----s------~~~d~~--d~tl-e~SRr 136 (764)
||.. .+++ + ++++++++..... .+ . ..+.+. ...+ .|++.
T Consensus 199 Da~q~~g~~~id~~~~~~D~~~~s~hK~~gp~G~g~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~ 278 (408)
T d1t3ia_ 199 DACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPA 278 (408)
T ss_dssp ECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCC
T ss_pred ccceecccccccccccCCceEEeccccccCCCCccccccchhhhhcCCceecCCcccccccccccccCCchhhhcCCcHH
Confidence 9942 1222 1 4555554221000 00 0 000010 1122 23443
Q ss_pred ccH-HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC-----CceeEEEEeeccccccccccccCccC
Q psy13453 137 FRA-LKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPP-----SMGLVCFRLKVRFWDKLDNLFGTISF 210 (764)
Q Consensus 137 ~~A-LklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P-----~l~iV~Fry~P~~~~~~~~~~~~~~~ 210 (764)
.-+ +.+=.++.++-..|..++-++...+++++.+.+++.+++.+++++ ..++|+|....
T Consensus 279 ~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~iv~f~~~~--------------- 343 (408)
T d1t3ia_ 279 IAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAG--------------- 343 (408)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETT---------------
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHhhhhccCccccccCCCccccCcceEEEEEeCC---------------
Confidence 332 245556666555677777778888999999999999999998743 25689997531
Q ss_pred CccHHHHHHHHHHHhcCcEEEEec--------eeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13453 211 GDNDLNKAVYDRIIARKVIYIVKG--------SFQDRLFMRFAICSSQTEESDVQLGWNEIRTATE 268 (764)
Q Consensus 211 ~~d~~n~~L~~~L~~~G~~~vs~t--------~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~ 268 (764)
.+ ...+.+.|.+.|....+.. .+...-.+|++ .++.+|++||+.+++.|+++.+
T Consensus 344 -~~--~~~v~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~vRiS-~~~ynt~~did~li~~L~~~~~ 405 (408)
T d1t3ia_ 344 -LH--ASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARAS-LYFYNTKEEIDLFLQSLQATIR 405 (408)
T ss_dssp -BC--HHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEE-CCTTCCHHHHHHHHHHHHHHHH
T ss_pred -CC--HHHHHHHHhhCCcEEecCcccccHHHHhhcCCccEEEE-CCCCCCHHHHHHHHHHHHHHHH
Confidence 11 1356777878886322111 01223479996 5688899999999999998865
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=98.60 E-value=1e-06 Score=94.92 Aligned_cols=160 Identities=14% Similarity=0.059 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
.+..++=+.+++++|.+. .++.++|..||+..+.+.... .+..+|+..+..|
T Consensus 90 ~~h~~LE~~lA~~~g~e~-----------all~~sG~~An~~~i~~l~~~-----------------~~~d~i~~D~~~H 141 (396)
T d2bwna1 90 AYHRRLEAEIAGLHQKEA-----------ALVFSSAYNANDATLSTLRVL-----------------FPGLIIYSDSLNH 141 (396)
T ss_dssp HHHHHHHHHHHHHTTCSE-----------EEEESCHHHHHHHHHHHHHHH-----------------STTCEEEEETTCC
T ss_pred hHHHHHHHHHHHHhCCCc-----------eeeeecchHHHHHHHHHHhcc-----------------cCCCceeehhhhh
Confidence 344455568899998865 578888999998776543211 0234789999999
Q ss_pred hhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEec
Q psy13453 642 SSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 721 (764)
Q Consensus 642 ~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDa 721 (764)
.|+..+++..+..++..+-+ |+++|++.++.... ..+.+||.-.--...|.+-||++|.++|++||++|.||-
T Consensus 142 asi~~g~~ls~a~~~~f~Hn-----d~~~l~~l~~~~~~--~~~~~iv~egvySmdGd~apl~~l~~L~~~y~~~L~vDe 214 (396)
T d2bwna1 142 ASMIEGIKRNAGPKRIFRHN-----DVAHLRELIAADDP--AAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDE 214 (396)
T ss_dssp HHHHHHHHHSCCCEEEECTT-----CHHHHHHHHHHSCT--TSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEEC
T ss_pred hccchhhhccccCceEeecc-----hHHHhhhHHhhhcc--cCceeEEEEeeccCcccccccHhHHHHhhhhcceeeecc
Confidence 99999999999988877643 47788888765433 334555555555668999999999999999999999999
Q ss_pred cccccccccchhh---hhhcCCCcccEEEEcCCccCCCC
Q psy13453 722 AYAGSALLLPEYA---HLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 722 A~Gg~~l~~~~~r---~~l~gie~aDSit~d~HK~l~~P 757 (764)
|||.+.+-- .-+ ..+.-....|-++.++-|.++..
T Consensus 215 AHs~Gv~G~-~G~G~~~~~~~~~~~di~~gTlsKa~g~~ 252 (396)
T d2bwna1 215 VHAVGMYGP-RGAGVAERDGLMHRIDIFNGTLAKAYGVF 252 (396)
T ss_dssp TTTTTTSST-TSCCHHHHHTCGGGCSEEEEESSSTTCSC
T ss_pred ceeeeeecc-ccccchhhcCCceeeeeeeeccccccccc
Confidence 999876531 111 11111235699999999999865
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.59 E-value=9.9e-08 Score=102.66 Aligned_cols=171 Identities=14% Similarity=0.090 Sum_probs=122.5
Q ss_pred ccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceE
Q psy13453 554 WLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633 (764)
Q Consensus 554 ~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~v 633 (764)
|...-...++|..+++...++||... .-+=.-+||.||+.+..+-.+ +.. .=+.
T Consensus 64 y~G~~~iD~iE~la~~ra~~lF~a~~----------anVqp~SGs~AN~av~~All~---pGD-------------~Il~ 117 (416)
T d1dfoa_ 64 YGGCEYVDIVEQLAIDRAKELFGADY----------ANVQPHSGSQANFAVYTALLE---PGD-------------TVLG 117 (416)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHTCSE----------EECCCSSHHHHHHHHHHHHCC---TTC-------------EEEE
T ss_pred cCCChhHHHHHHHHHHHHHHHhCCCc----------ceeecccCccHHHHHHHHhcC---CCC-------------eeee
Confidence 33455778999999999999999743 123446789999887764311 100 0112
Q ss_pred EEecCCcchhHHHHHHhCCC--ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHH
Q psy13453 634 AYTSDQSNSSVEKSAIIGDV--PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQ 711 (764)
Q Consensus 634 i~~S~~aH~Sv~kAa~~lGl--~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~ 711 (764)
+=.+...|.+-...+...|. +....++|+++.+|.+++++..++. +|-+|+ +|.+.+.-.-|++++++||+
T Consensus 118 l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~IDyd~l~~~a~~~-----kPklIi--~G~S~y~r~~d~~~~reiad 190 (416)
T d1dfoa_ 118 MNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEH-----KPKMII--GGFSAYSGVVDWAKMREIAD 190 (416)
T ss_dssp ECTTTTCCGGGTCTTSHHHHHSEEEEECBCSSSSBCHHHHHHHHHHH-----CCSEEE--EECSSCCSCCCHHHHHHHHH
T ss_pred ccccccccccccccccccCceEEEEecccCCccCccHHHHHHHHHHh-----ccceEE--ecccccccccCHHHHHHHHH
Confidence 22455666665443333333 5566677888999999999998775 366665 45566777778999999999
Q ss_pred hcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCc
Q psy13453 712 EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDC 760 (764)
Q Consensus 712 ~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~ 760 (764)
+.|.+|++|+||-.+++....+.. -++.||.||.+.||.|..|.|.
T Consensus 191 ~vga~l~~D~aH~~GLIa~g~~~s---P~~~aDvvt~tThKtlrGPrgg 236 (416)
T d1dfoa_ 191 SIGAYLFVDMAHVAGLVAAGVYPN---PVPHAHVVTTTTHKTLAGPRGG 236 (416)
T ss_dssp HTTCEEEEECTTTHHHHHHTSSCC---CTTTSSEEEEESSSTTCCCSCE
T ss_pred hcCceEEcchhhhhcceeccccCC---cccccceeeeehhhcccCCCce
Confidence 999999999999888766544433 3567899999999999999774
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=98.59 E-value=2e-07 Score=99.54 Aligned_cols=232 Identities=7% Similarity=-0.038 Sum_probs=132.9
Q ss_pred ccccCCcceeeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc
Q psy13453 11 AYPSETLSLLIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS 90 (764)
Q Consensus 11 ~~~~~~~~~~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~ 90 (764)
.+.++..--+.+.+.+++...|+.. +.||.++++.+|+++++++|++++ -+++-+..+.++|.+-|+++|++
T Consensus 96 Vv~~~~~~~s~~~~~~~~~~~G~~v---~~v~~~~~~~~d~~~~~~~i~~~T-----~lv~is~~~n~tG~~~~~~~I~~ 167 (391)
T d1p3wa_ 96 IITSKTEHKAVLDTCRQLEREGFEV---TYLAPQRNGIIDLKELEAAMRDDT-----ILVSIMHVNNEIGVVQDIAAIGE 167 (391)
T ss_dssp EEEETTSCHHHHHHHHHHHHTTCEE---EEECCCTTSCCCHHHHHHHCCTTE-----EEEECCSBCTTTCCBCCHHHHHH
T ss_pred EEEeccccchHHHHHHHHHHcCCEE---EEeCCCCCCeEcHHHHHHhCCCCc-----EEEEEECCCCCCeeECCHHHHHH
Confidence 5555652112233344555557666 999999999999999999997642 35568889999999999999987
Q ss_pred -----CCCceeccccc--------------------ccc-----ceeeeecCCCccccccccccccC---CcccC-CCCc
Q psy13453 91 -----NGPLKVGGVLR--------------------RVY-----SSCLVPRGQKSLRTTVLFHFLFQ---HWQIP-LGRR 136 (764)
Q Consensus 91 -----~~wlHVDa~l~--------------------~~y-----~s~ll~rd~~~l~~~~s~~~d~~---d~tle-~SRr 136 (764)
+++++||++.. +++ .++++.+.+. +..... ..++ ....+ ++..
T Consensus 168 ~~~~~~~~~ivD~~~~~g~~~~d~~~~~~D~~~~s~~k~~g~~g~g~~~~~~~~-~~~~~~--~~~gg~~~~~~~~~~~~ 244 (391)
T d1p3wa_ 168 MCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKP-RVRIEA--QMHGGGHERGMRSGTLP 244 (391)
T ss_dssp HHHHHTCEEEEECTTTBTTBCCCTTTSCCSEEEEESTTTTSCSSCEEEEECBTT-BCCCCC--SSCSSCTTTTTSCSCCC
T ss_pred HhccCCcEEEEeeccccCCccccchhccccccccccccccCCCceEEEEEecch-hcccCC--cccCCccccCcccCcch
Confidence 89999999531 111 1233333321 111100 0011 00111 1111
Q ss_pred ccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC---ceeEEEEeeccccccccccccCccCCcc
Q psy13453 137 FRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS---MGLVCFRLKVRFWDKLDNLFGTISFGDN 213 (764)
Q Consensus 137 ~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~---l~iV~Fry~P~~~~~~~~~~~~~~~~~d 213 (764)
.....-.........+...+..++..+++.++.+.|.+.++..+..... ..+++|..... ..
T Consensus 245 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~- 309 (391)
T d1p3wa_ 245 VHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYV--------------EG- 309 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTEEECSCTTTSCTTEEEEEETTS--------------CH-
T ss_pred hhhhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHhhcCeeecccccccCceEEEEEeCCC--------------Ch-
Confidence 1111111222223455566677888889999999999998887754432 34556654210 11
Q ss_pred HHHHHHHHHHHh----cCcEEEEece----------eC---CeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHc
Q psy13453 214 DLNKAVYDRIIA----RKVIYIVKGS----------FQ---DRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLR 272 (764)
Q Consensus 214 ~~n~~L~~~L~~----~G~~~vs~t~----------l~---g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~ 272 (764)
..+...|.. .|-....... +. ...++|++ .++.+|++|++.+++.|+++.+.+.+
T Consensus 310 ---~~~~~~l~~i~v~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS-~~~~nt~edid~l~~~l~~~l~~lr~ 381 (391)
T d1p3wa_ 310 ---ESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFS-LGRFTTEEEIDYTIELVRKSIGRLRD 381 (391)
T ss_dssp ---HHHHHHTTTEECBCCCC------CCCHHHHHHTCCHHHHHTEEEEE-CCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHhCCCEEEccccccCCccchhHHHHHcCCCccccCCEEEEe-cCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 122333321 1110000000 00 01369997 56678899999999999999988754
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=98.58 E-value=3.5e-07 Score=97.11 Aligned_cols=163 Identities=17% Similarity=0.105 Sum_probs=112.0
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEE
Q psy13453 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAY 635 (764)
Q Consensus 556 ~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~ 635 (764)
.+|....+|+. +++.+|.. ..+++++||.|+++|+.+.. ..++..|+
T Consensus 19 ~G~~~~~fE~~----~~~~~~~~-----------~~~~~~SgT~Al~lal~~l~------------------~~~gdeVi 65 (374)
T d1o69a_ 19 LGEFVNRFEQS----VKDYSKSE-----------NALALNSATAALHLALRVAG------------------VKQDDIVL 65 (374)
T ss_dssp TTHHHHHHHHH----HHHHHCCS-----------EEEEESCHHHHHHHHHHHTT------------------CCTTCEEE
T ss_pred CCHHHHHHHHH----HHHHHCcC-----------eEEEeCCHHHHHHHHHHHcC------------------CCCcCEEE
Confidence 37888899985 46677764 37899999999999987431 11223588
Q ss_pred ecCCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCC
Q psy13453 636 TSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNI 715 (764)
Q Consensus 636 ~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~gl 715 (764)
++..++.+...+....|..++.+.+|++..+.....+........ .+-+|+++ ...|...++++|.++|+++|+
T Consensus 66 ~p~~t~~a~~~~~~~~g~~pv~~Di~~~~~~~~~~~~~~~~~~~~---~~~aii~~---~~~G~~~d~~~i~~~~~~~~i 139 (374)
T d1o69a_ 66 ASSFTFIASVAPICYLKAKPVFIDCDETYNIDVDLLKLAIKECEK---KPKALILT---HLYGNAAKMDEIVEICKENDI 139 (374)
T ss_dssp EESSSCGGGTHHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSS---CCCEEEEE---CGGGCCCCHHHHHHHHHHTTC
T ss_pred eCCcchHhhHHHHhhccceeEecccccccccccccccccchhccc---cccccccc---ccccchhhhHHHHHHhhccCc
Confidence 899999999999999999999999986654444333333322211 13344443 447888999999999999999
Q ss_pred EEEEeccccccccccchhhhhhcCCCcccEEEEcCC--ccCCCCcCceee
Q psy13453 716 WLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTH--KWLLVNFDCSAM 763 (764)
Q Consensus 716 wLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~H--K~l~~P~~~g~l 763 (764)
+++-|+|++-++-.-. ..-|- ..|.-++|+| |.+.+- +.|++
T Consensus 140 ~vIED~a~a~g~~~~~----~~~G~-~gd~~~fSf~~~K~l~tg-eGG~i 183 (374)
T d1o69a_ 140 VLIEDAAEALGSFYKN----KALGT-FGEFGVYSYNGNKIITTS-GGGML 183 (374)
T ss_dssp EEEEECTTCTTCEETT----EETTS-SSSEEEEECCTTSSSCCS-SCEEE
T ss_pred chhhhhhhhhcceECC----eecCC-CCceEEEeccCccccccc-cceee
Confidence 9999999987654322 22221 3465555555 877654 33443
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=98.54 E-value=3.6e-06 Score=92.47 Aligned_cols=243 Identities=16% Similarity=0.135 Sum_probs=158.7
Q ss_pred hhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCccccccCCCCChHHHHHHHHHHhhcccCccc---cCCchH
Q psy13453 484 PGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSW---LSSPAC 560 (764)
Q Consensus 484 p~~l~~~l~~~lP~~g~~~~~il~~l~~~i~~~~~~~~~P~~~~~~~~~~~~~~~lad~l~~~lN~n~~~~---~~sp~~ 560 (764)
|++++..-+..||+ .+--++++++.++...+.....+..++|..+- --.+++. +.+...+ +....| +.|...
T Consensus 30 P~~~~~~~~l~LP~--~sE~El~r~~~~la~kN~~~~~~~~~lG~~~~-hy~P~v~-~~~~~~~-TaYTPYQPaEiSQG~ 104 (471)
T d1wyub1 30 PKEHLREVPPRLPE--VDELTLVRHYTGLSRRQVGVDTTFYPLGSCTM-KYNPKLH-EEAARLF-ADLHPYQDPRTAQGA 104 (471)
T ss_dssp CGGGBCSSCCCCCC--CCHHHHHHHHHHHHTTCCCTTTSCCCBTTTCC-CCCCHHH-HHHHHTT-SSCCTTSCGGGCHHH
T ss_pred CHHHHcCCCCCCCC--CCHHHHHHHHHHHHhCCCCccccccCCccccC-ccCcchh-hhHHHHH-hccCCCCCHHHHHHH
Confidence 34444444466784 78899999999987766543344455552110 0112222 3333333 222223 447777
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
-+.--+-..++++|.|++-. ..-. -.|..|...|+.+|+.....+.+. ....+++.+...
T Consensus 105 LQalfEfQtmi~eLTGMdva---------NaS~-yDGatA~aeA~~ma~r~~~~~~~~----------~~~~~~~~~~~~ 164 (471)
T d1wyub1 105 LRLMWELGEYLKALTGMDAI---------TLEP-AAGAHGELTGILIIRAYHEDRGEG----------RTRRVVLVPDSA 164 (471)
T ss_dssp HHHHHHHHHHHHHHHTCSEE---------ECCC-SSHHHHHHHHHHHHHHHHHHTTCT----------TTCCEEEEETTS
T ss_pred HHHHHHHHHHHHHHhCCCcc---------cccc-chHHHHHHHHHHHHHHHhhhcccc----------cccccccCCccc
Confidence 78888889999999999752 1112 334455667777776543322111 113345667777
Q ss_pred chhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEe
Q psy13453 641 NSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVD 720 (764)
Q Consensus 641 H~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVD 720 (764)
|..........+..++.++.+..+..|.+.++..+..+. ..|+++..++..+..++++++++++++.+.-+++|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------a~v~v~~p~~~g~~e~~~~~~~~~~h~~g~~~~~~ 238 (471)
T d1wyub1 165 HGSNPATASMAGYQVREIPSGPEGEVDLEALKRELGPHV------AALMLTNPNTLGLFERRILEISRLCKEAGVQLYYD 238 (471)
T ss_dssp CTHHHHHHHHTTCEEEEECBCTTSSBCHHHHHHHCSTTE------EEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEE
T ss_pred ccceeeeeecccceeecccccccccccchhhhhhhhccc------cceeeccCCCcccccchhhhhHHHHHhcccccccc
Confidence 777777777788899999999999999999998765553 47778887776555567999999999999999999
Q ss_pred ccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCcee
Q psy13453 721 AAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSA 762 (764)
Q Consensus 721 aA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~ 762 (764)
++--...+...+-.. ..+|-++++-|+.++.|.+.|.
T Consensus 239 ~~~~~~~~~l~~p~~-----~g~div~vg~~q~~G~P~~~GG 275 (471)
T d1wyub1 239 GANLNAIMGWARPGD-----MGFDVVHLNLHKTFTVPHGGGG 275 (471)
T ss_dssp GGGGGGTTTTCCHHH-----HTCSEEECCTTTTTCCCCTTSC
T ss_pred ccchhhhhhccccCc-----cccccccccccccccccccccc
Confidence 885544332111111 1359999999999999987764
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=98.53 E-value=1.4e-06 Score=94.79 Aligned_cols=228 Identities=12% Similarity=0.033 Sum_probs=149.2
Q ss_pred hhhHhhcCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCccccccCCCCChHHHHHHHHH--Hhhccc-CccccCCchH
Q psy13453 484 PGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLS--GAFGLI-GFSWLSSPAC 560 (764)
Q Consensus 484 p~~l~~~l~~~lP~~g~~~~~il~~l~~~i~~~~~~~~~P~~~~~~~~~~~~~~~lad~l~--~~lN~n-~~~~~~sp~~ 560 (764)
|+.+++ -+..||+ +.+-.+++.++.++-..+..-. ..|++-=.+.--+++++.+++. .+++.. ....+.+...
T Consensus 31 P~~~~~-~~~~lp~-~~sE~e~~r~~~~ls~kN~~~~--~~fig~G~~~~~~p~~i~~~~~~~~~~t~ytPyqpE~sQG~ 106 (437)
T d1wyua1 31 PKEILS-PPIDLPE-PLPEWKVLEELRRLAAQNLPAH--KAFLGGGVRSHHVPPVVQALAARGEFLTAYTPYQPEVSQGV 106 (437)
T ss_dssp CGGGSS-CCCCCCC-CCCHHHHHHHHHHHHHTSCCCT--TCCCCSSCCCCCCCHHHHHHHTSHHHHHCCSCCSGGGCHHH
T ss_pred cHHHhc-CCCCCCC-CCCHHHHHHHHHHHHhCCCCcC--ccccCcccCCceeCHHHHHHHhChhhhhhCCCcchHHHHHH
Confidence 555543 2456773 5688999999999766553211 2354443333344555554443 244443 2344678888
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
-++-.+.-.||+++.|++.. . .-...|..+.+.|+++++.....+ .++++...
T Consensus 107 Lq~l~e~q~~l~eltGmd~~---------n-~s~~~ga~a~~~~~~~~~~~~~~~-----------------~~~v~~~~ 159 (437)
T d1wyua1 107 LQATFEYQTMIAELAGLEIA---------N-ASMYDGATALAEGVLLALRETGRM-----------------GVLVSQGV 159 (437)
T ss_dssp HHHHHHHHHHHHHHHTSSEE---------C-SCBSSHHHHHHHHHHHHHHHHTCC-----------------EEEEETTS
T ss_pred HHHHHHHHHHHHHhhCCCcc---------c-cCchHHHHHHHHHHHHHHhhhccc-----------------cccccccc
Confidence 88888999999999999852 0 112346667788888887643111 24567777
Q ss_pred chh----HHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCE
Q psy13453 641 NSS----VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIW 716 (764)
Q Consensus 641 H~S----v~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glw 716 (764)
|.+ +.-.|...|++++.||.++.+ .+.++ + +...++|++|..+| .|.|.++++|++++++.|..
T Consensus 160 ~p~~~~v~~t~a~~~g~~vv~v~~~~~~-~~~~~----~------~~~~Aavmi~~Pnt-~G~~ed~~~i~~~~h~~G~l 227 (437)
T d1wyua1 160 HPEYRAVLRAYLEAVGAKLLTLPLEGGR-TPLPE----V------GEEVGAVVVQNPNF-LGALEDLGPFAEAAHGAGAL 227 (437)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECCBTTB-CCCCC----C------CTTEEEEEEESSCT-TSBCCCHHHHHHHHHHTTCE
T ss_pred ChHHhhhhhhhcccceeeEEeeeccccc-chhhh----h------ccceeEEEEccccc-cccccchHHHHHHhhhccce
Confidence 754 344467789999999987544 33322 2 23467999999988 59999999999999999998
Q ss_pred EEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCce
Q psy13453 717 LHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCS 761 (764)
Q Consensus 717 LHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g 761 (764)
+.+|+..-+...+.+.-.. .||-+..+ ||-+++|.++|
T Consensus 228 ~~~~ad~~al~~l~~Pg~~------GaDi~~g~-~q~fg~p~g~G 265 (437)
T d1wyua1 228 FVAVADPLSLGVLKPPGAY------GADIAVGD-GQSLGLPMGFG 265 (437)
T ss_dssp EEEECCTTGGGTBCCHHHH------TCSEEEEE-CTTTTCCCGGG
T ss_pred EEeeechhhhhcccccccc------ccceEeec-cceeccccCCC
Confidence 8888765432222222111 45999999 88899999886
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=98.53 E-value=1.4e-08 Score=106.20 Aligned_cols=196 Identities=8% Similarity=-0.086 Sum_probs=127.6
Q ss_pred ccccCCCCChHH-HHHHHHHHhhc---ccCcccc---CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChH
Q psy13453 526 NAYFPTGSSYPS-IVGDMLSGAFG---LIGFSWL---SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTAS 598 (764)
Q Consensus 526 ~~~~~~~~~~~~-~lad~l~~~lN---~n~~~~~---~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgT 598 (764)
|+|-|++...+. ++-.+-...+| .+...++ -++.+.++-.++++.+++++|.+++ ...+|++|++
T Consensus 3 ~nF~pGP~~~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~--------~~v~~~~gs~ 74 (360)
T d1bjna_ 3 FNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSN--------YKVLFCHGGG 74 (360)
T ss_dssp EECCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTT--------EEEEEESSHH
T ss_pred EEeCCCCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCC--------CEEEEECCch
Confidence 567776665444 44433333333 3333222 4688889999999999999999764 3568899998
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchh--HHHHHHhCCCceEEEecCCCCcccHHHHHHHHH
Q psy13453 599 EATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSS--VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVK 676 (764)
Q Consensus 599 eANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~S--v~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~ 676 (764)
++++.+.... ..+ ++.++++....++. +...+...|..+..+..+..+..+.+.+++.+.
T Consensus 75 t~~~~a~~~~---~~~---------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (360)
T d1bjna_ 75 RGQFAAVPLN---ILG---------------DKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKVTVDGLRAVKPMREWQ 136 (360)
T ss_dssp HHHHHHHHHH---HCT---------------TCCEEEEEESSHHHHHHHHHHTTTSEEEEEECEEEETTEEEECCGGGCC
T ss_pred HHHHhhhhhc---ccc---------------cccccceecccchhhhhHHHHhhcCccceeeccccCCCcchhhhhhhhc
Confidence 8876654322 111 12234444333333 344445566666666666556666655555443
Q ss_pred HhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCC
Q psy13453 677 EDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLV 756 (764)
Q Consensus 677 ~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~ 756 (764)
.. +-+++.+..+|.+|...|+.++. ++.+++-++||++.+.+....+. . .+|...++.||+++.
T Consensus 137 ~~------~~~v~v~~~~~~t~~~~~~~~i~--~~~~~~~v~vDa~~~~~~~~vd~-----~---~~dv~~~ss~k~~~~ 200 (360)
T d1bjna_ 137 LS------DNAAYMHYCPNETIDGIAIDETP--DFGADVVVAADFSSTILSRPIDV-----S---RYGVIYAGAQKNIGP 200 (360)
T ss_dssp CC------SSCSCEEECSEETTTTEECCCCC--CCCTTCCEEEECTTTTTSSCCCG-----G---GCSEEEEETTTTTSS
T ss_pred cC------CceeEEEecccccccCcccccee--cccccceeeeeeeccccceeeee-----c---cceeEEEEccccccc
Confidence 32 33666677888999999888764 56788999999999886555542 2 349999999999999
Q ss_pred CcCceee
Q psy13453 757 NFDCSAM 763 (764)
Q Consensus 757 P~~~g~l 763 (764)
|.+.+++
T Consensus 201 ~~~~~~~ 207 (360)
T d1bjna_ 201 AGLTIVI 207 (360)
T ss_dssp TTCEEEE
T ss_pred CCCceeE
Confidence 9888775
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=98.51 E-value=1.1e-08 Score=107.54 Aligned_cols=189 Identities=8% Similarity=-0.123 Sum_probs=111.5
Q ss_pred ccccCCCCChHHHHHHHHHH-hhc---ccCcccc---CCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChH
Q psy13453 526 NAYFPTGSSYPSIVGDMLSG-AFG---LIGFSWL---SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTAS 598 (764)
Q Consensus 526 ~~~~~~~~~~~~~lad~l~~-~lN---~n~~~~~---~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgT 598 (764)
|+|-+++...+.-+-+.+.. .+| ......+ -++.+..+-+++++.++++||.|++ ...+|++|++
T Consensus 5 ~nF~pGP~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~--------~~i~~~~gt~ 76 (360)
T d1w23a_ 5 FNFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPND--------YQILFLQGGA 76 (360)
T ss_dssp EECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTT--------EEEEEESSHH
T ss_pred eEeCCCCcCCCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCC--------CEEEEeCCcH
Confidence 55666655544444444443 333 1122211 3788999999999999999999875 2467778777
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchh--HHHHHHhCCCceEEEecCCCCcccHHHHHHHHH
Q psy13453 599 EATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSS--VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVK 676 (764)
Q Consensus 599 eANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~S--v~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~ 676 (764)
++++.+... ..... +.++++....|++ +..-+...+..+..+........+++.++..+.
T Consensus 77 ~~~~~~~~~---~~~~~---------------~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (360)
T d1w23a_ 77 SLQFTMLPM---NLLTK---------------GTIGNYVLTGSWSEKALKEAKLLGETHIAASTKANSYQSIPDFSEFQL 138 (360)
T ss_dssp HHHHHHHHH---HHCCT---------------TCEEEEEECSHHHHHHHHHHHTTSEEEEEEECGGGTSCSCCCGGGCCC
T ss_pred HHHHHHHHh---hhccc---------------CcccceeeccchhhhhHHHHHHhhhcceeeccccccccchhhhhhccc
Confidence 776544332 11111 1122222233333 223344455555444433222233333322221
Q ss_pred HhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCC
Q psy13453 677 EDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLV 756 (764)
Q Consensus 677 ~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~ 756 (764)
.+..+..+|.+|.+.|+++|+++|+++|+.++|||+++.+....+-.+ + .+|..++..||++..
T Consensus 139 ----------~~~~~~~~~~tg~~~~~~~i~~~~~~~g~l~ivDavqs~g~~~id~~~-----~-~vd~~~~~~~k~~~~ 202 (360)
T d1w23a_ 139 ----------NENDAYLHITSNNTIYGTQYQNFPEINHAPLIADMSSDILSRPLKVNQ-----F-GMIYAGAQKNLGPSG 202 (360)
T ss_dssp ----------CTTEEEEEEESEETTTTEECSSCCCCCSSCEEEECTTTTTSSCCCGGG-----C-SEEEEETTTTTSCTT
T ss_pred ----------ccccceeEecCCccccceeeeeccccceeeEEeecccccccccccccc-----c-cceEEeeccccccCC
Confidence 112345567789999999999999999999999999998877664322 2 458888888886553
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=98.50 E-value=1.3e-06 Score=94.19 Aligned_cols=200 Identities=9% Similarity=0.019 Sum_probs=132.1
Q ss_pred HHHHHHHHHhhccc---CccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHh
Q psy13453 537 SIVGDMLSGAFGLI---GFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMI 613 (764)
Q Consensus 537 ~~lad~l~~~lN~n---~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~ 613 (764)
..+.+.+...+... ...|........+-+.+.+|+.+..|++.. .....++|+|+++++..++.+. .
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~------~~~~I~it~G~~~al~~~~~~~----~ 125 (420)
T d1vp4a_ 56 KELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGL------DEDNLIFTVGSQQALDLIGKLF----L 125 (420)
T ss_dssp HHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSC------CGGGEEEEEHHHHHHHHHHHHH----C
T ss_pred HHHHHHHHHHHhhCCccccCCCCCcCCHHHHHHHHHHHHHHhCCCCC------CHHHeEeccchhhhHHHHHHhh----h
Confidence 34444444444321 234555555677888899999999887521 1246889999999987665532 1
Q ss_pred hhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCC---CceEEEE
Q psy13453 614 NHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGL---IPCCLIA 690 (764)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~---~p~~Vva 690 (764)
. ++..|++.+-++......+...|.+++.+|.+++ .+|++.++..+.+...... ...+++.
T Consensus 126 ~---------------~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 189 (420)
T d1vp4a_ 126 D---------------DESYCVLDDPAYLGAINAFRQYLANFVVVPLEDD-GMDLNVLERKLSEFDKNGKIKQVKFIYVV 189 (420)
T ss_dssp C---------------TTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETT-EECHHHHHHHHHHHHHTTCGGGEEEEEEE
T ss_pred c---------------cccccccccccccchhHHHHHHhhhccccccccc-ccccchhhhhhhhhHHHhhccccceeeEe
Confidence 1 1224667778888888889999999999999865 4899999998876544432 2345556
Q ss_pred eeccCCcccc---ccHHHHHHHHHhcCCEEEEeccccccccccchhhh--hhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 691 TLGTTGTCAF---DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAH--LKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 691 taGTT~~Gai---Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~--~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
+..++.+|.+ +.+++|+++|++|++|+.+|.+|.....-.+.... ....- ..-.+..++.|++..-.-+|.+
T Consensus 190 ~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~-~~~i~~~s~sk~~~~G~RiG~~ 266 (420)
T d1vp4a_ 190 SNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGP-ERVVLLNTFSKVLAPGLRIGMV 266 (420)
T ss_dssp CSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCT-TTEEEEEESTTTTCGGGCEEEE
T ss_pred cCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCcccccccccccc-cceeEEeccccccccccccccc
Confidence 6777889987 57788999999999999999999864332211110 11111 1134556678877644445543
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=98.50 E-value=2.9e-07 Score=98.14 Aligned_cols=217 Identities=12% Similarity=-0.016 Sum_probs=140.7
Q ss_pred eeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCce
Q psy13453 21 IYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLK 95 (764)
Q Consensus 21 ~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlH 95 (764)
||+...+..-.+... ..++++.++..+++.++++|++++ -+++-+.-+..+|.+-|+++|++ ++.+|
T Consensus 127 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~T-----~lV~i~~v~~~tG~~~pv~~i~~~~~~~~~~~~ 198 (404)
T d1qz9a_ 127 NFPTDLYIAEGLADM---LQQGYTLRLVDSPEELPQAIDQDT-----AVVMLTHVNYKTGYMHDMQALTALSHECGALAI 198 (404)
T ss_dssp SCHHHHHHHHHHHHH---HCSSCEEEEESSGGGHHHHCSTTE-----EEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEE
T ss_pred cchHHHHHHhhhhee---eeeceeccccccchhHHHhcCCCc-----eEEEEecccccccceecHHHHhcccccccccee
Confidence 444443333333333 445666667888999999887643 24468999999999999999997 88999
Q ss_pred ecccc--------------------ccc------cceeeeecCCCccccc------cccc---c-ccCCc--------cc
Q psy13453 96 VGGVL--------------------RRV------YSSCLVPRGQKSLRTT------VLFH---F-LFQHW--------QI 131 (764)
Q Consensus 96 VDa~l--------------------~~~------y~s~ll~rd~~~l~~~------~s~~---~-d~~d~--------tl 131 (764)
||+.. .++ .++.+++.....+... .... + ....+ .-
T Consensus 199 vD~~q~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (404)
T d1qz9a_ 199 WDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYL 278 (404)
T ss_dssp EECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGC
T ss_pred EEeeccccccccccccccceEEEEechhhcccCCceEEEEEechhhhhhCCccccccCCccccccccccccccccchhhh
Confidence 99932 122 1233444433322111 0000 0 00001 11
Q ss_pred CCCCcccHH----HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC----ceeEEEEeeccccccccc
Q psy13453 132 PLGRRFRAL----KLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS----MGLVCFRLKVRFWDKLDN 203 (764)
Q Consensus 132 e~SRr~~AL----klWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~----l~iV~Fry~P~~~~~~~~ 203 (764)
.++....++ .....+...|.+..++......+....+.+.+...++++++++.+ .++|+|+..
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~i~~p~~~~~r~~~vsf~~~--------- 349 (404)
T d1qz9a_ 279 CGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP--------- 349 (404)
T ss_dssp CSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT---------
T ss_pred hhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHhhccCCCEEEECCCCccceeeEEEEecC---------
Confidence 122222222 223445558899999999999999999999999999999998654 468999753
Q ss_pred cccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 204 LFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 204 ~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
+ ..++.++|.++|... ..+.+.+||+++.+..+|++||+++++.|+++.++
T Consensus 350 -------~----~~~v~~~L~~~gi~~----~~r~~~~lRiS~~h~ynt~~did~~~~~L~~vl~~ 400 (404)
T d1qz9a_ 350 -------E----GYAVIQALIDRGVIG----DYREPRIMRFGFTPLYTTFTEVWDAVQILGEILDR 400 (404)
T ss_dssp -------T----HHHHHHHHHTTTEEC----EEETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred -------C----HHHHHHHHHHCCCEE----eecCCCeEEEECCCCCCCHHHHHHHHHHHHHHHHh
Confidence 1 246888899888621 23344589998887778999999999999988654
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.49 E-value=4.8e-07 Score=96.86 Aligned_cols=170 Identities=12% Similarity=0.081 Sum_probs=121.3
Q ss_pred ccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceE
Q psy13453 554 WLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633 (764)
Q Consensus 554 ~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~v 633 (764)
|.......++|..+++...++||..- .-+=.-+||.||+....+-.+ |...
T Consensus 61 y~G~~~id~iE~la~~ra~~lF~a~~----------anVqp~SGs~An~av~~all~-------------------pGD~ 111 (405)
T d1kl1a_ 61 YGGCEYVDIVEELARERAKQLFGAEH----------ANVQPHSGAQANMAVYFTVLE-------------------HGDT 111 (405)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHCCSE----------EECCCSSHHHHHHHHHHHHCC-------------------TTCE
T ss_pred cCCchhHHHHHHHHHHHHHHHhCCCc----------ceeeccCchHHHHHHHHHhcC-------------------CCCE
Confidence 44566889999999999999999743 123346789999776553211 1112
Q ss_pred EE---ecCCcchhHHHHHHhCC--CceEEEecC-CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHH
Q psy13453 634 AY---TSDQSNSSVEKSAIIGD--VPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELG 707 (764)
Q Consensus 634 i~---~S~~aH~Sv~kAa~~lG--l~v~~Vp~d-~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa 707 (764)
|+ .+.-.|.|-.+.....| .+....|+| +++.||.+++++.+++. +|-+|+ +|.+.+--.-|+++++
T Consensus 112 im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~l~~~a~~~-----kPklIi--~G~S~y~r~~d~~~~r 184 (405)
T d1kl1a_ 112 VLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLH-----RPKLIV--AAASAYPRIIDFAKFR 184 (405)
T ss_dssp EEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHH-----CCSEEE--ECCSSCCSCCCHHHHH
T ss_pred EEEeecccccccccCccccccceEEEEEEeccchhcccccHHHHHHHHHhh-----CcceEE--ecccccccccChHHHH
Confidence 22 44566666433322222 356666888 67889999999999875 365664 4556666666799999
Q ss_pred HHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCcee
Q psy13453 708 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSA 762 (764)
Q Consensus 708 ~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~ 762 (764)
+||++.|.+|++|+||-.+++....+.. -++.||.||.+.||.|..|.|.=+
T Consensus 185 eIad~vga~l~~D~aH~~GLIa~g~~~~---P~~~aDvvt~tThKtlrGPrgg~I 236 (405)
T d1kl1a_ 185 EIADEVGAYLMVDMAHIAGLVAAGLHPN---PVPYAHFVTTTTHKTLRGPRGGMI 236 (405)
T ss_dssp HHHHHHTCEEEEECTTTHHHHHTTSSCC---STTTCSEEEEESSSTTCCCSCEEE
T ss_pred HHHhhhCCEEecchhhHhhhhhhhhcCC---hhhhhhheeccccccccCCCCceE
Confidence 9999999999999999888776654433 356789999999999999987543
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.47 E-value=5.6e-07 Score=96.55 Aligned_cols=185 Identities=13% Similarity=0.005 Sum_probs=124.8
Q ss_pred HHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhcc
Q psy13453 539 VGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQS 618 (764)
Q Consensus 539 lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~ 618 (764)
+-+.+...++.....|.......++-+.+.+|+.+..|++.+ ....++|+|++++...++.+.. .
T Consensus 51 i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~-------~~~i~i~~G~~~~~~~~~~~~~----~---- 115 (395)
T d1xi9a_ 51 MKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDIT-------PDDVRVTAAVTEALQLIFGALL----D---- 115 (395)
T ss_dssp HHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCC-------GGGEEEESHHHHHHHHHHHHHC----C----
T ss_pred HHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhhhhccccccc-------ccccccccccchhhhhhhhhhc----C----
Confidence 334444444433334555555677888889999999888653 2357889999998766554321 1
Q ss_pred CCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecC--CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCC
Q psy13453 619 KNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTG 696 (764)
Q Consensus 619 ~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d--~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~ 696 (764)
+...|++.+=+.......+...|..++.+|.+ +++.+|++++++.+.+. +-+|+.+..++.
T Consensus 116 -----------~Gd~vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~------~~~v~l~~P~NP 178 (395)
T d1xi9a_ 116 -----------PGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDR------TKAIAVINPNNP 178 (395)
T ss_dssp -----------TTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTT------EEEEEEESSCTT
T ss_pred -----------CCCEEEEcCCccccchhhhhhcCCEEEEEeccccccccchHHHHHHhhccc------ccEEEecCCCCC
Confidence 11245666667777888899999999989865 46789999999887543 337777888999
Q ss_pred cccc---ccHHHHHHHHHhcCCEEEEeccccccccccchhhh-hhcCCCcccEE-EEcCCccCCCC
Q psy13453 697 TCAF---DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAH-LKRGLEYVDSF-DFNTHKWLLVN 757 (764)
Q Consensus 697 ~Gai---Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~-~l~gie~aDSi-t~d~HK~l~~P 757 (764)
||.+ +.+.+|+++|++|++|+..|.+|.....-.+.... .+.. ....| ..++.|.++.|
T Consensus 179 TG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~--~~~vi~~~S~SK~~~~~ 242 (395)
T d1xi9a_ 179 TGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTK--DVPVIVMNGLSKVYFAT 242 (395)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCS--SSCEEEEEESTTTTCCG
T ss_pred ccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccccchhhcCC--CCCEEEEeCcchhcccc
Confidence 9988 56678888999999999999999764332211111 1111 11233 44799988766
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=98.43 E-value=2e-06 Score=92.37 Aligned_cols=148 Identities=15% Similarity=0.141 Sum_probs=106.2
Q ss_pred ccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceE
Q psy13453 554 WLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633 (764)
Q Consensus 554 ~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~v 633 (764)
|.......++=+.+.+|+.+.++...... ........++|+|+++++..++.+. .. +...
T Consensus 68 Y~~~~G~~~LReaia~~~~~~~~~~~~~~-~~~~~~~I~it~G~~~al~~~~~~l----~~---------------~Gd~ 127 (412)
T d1bw0a_ 68 YFPTVGSPEAREAVATWWRNSFVHKEELK-STIVKDNVVLCSGGSHGILMAITAI----CD---------------AGDY 127 (412)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHCCSTTTG-GGCCGGGEEEESHHHHHHHHHHHHH----CC---------------TTCE
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCcccccC-CCCCCCeEEEecccccchhhhhhhh----hc---------------cccc
Confidence 44444455666778888888765432100 0011246899999999987766532 11 1224
Q ss_pred EEecCCcchhHHHHHHhCCCceEEEecC--CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccHHHHHH
Q psy13453 634 AYTSDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLEELGP 708 (764)
Q Consensus 634 i~~S~~aH~Sv~kAa~~lGl~v~~Vp~d--~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~eIa~ 708 (764)
|++.+-+.......+...|++++.+|++ .++..++++|++.+.+. +.+++.+..++.||.+ +.+++|++
T Consensus 128 Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~l~~~~~~~------~~~~~l~np~NPtG~~~~~~~~~~i~~ 201 (412)
T d1bw0a_ 128 ALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDK------TKLLIVTNPSNPCGSNFSRKHVEDIVR 201 (412)
T ss_dssp EEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTT------EEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred eeeeeccchhhhhhhhccCccccccccccccccchhhHHHHhhhhcc------ccccccccccccccccchhhhcccccc
Confidence 6666667777788899999999999986 35679999998876554 3477788899999988 57788888
Q ss_pred HHHhcCCEEEEeccccccc
Q psy13453 709 ICQEYNIWLHVDAAYAGSA 727 (764)
Q Consensus 709 i~~~~glwLHVDaA~Gg~~ 727 (764)
+|++|++|+.+|.+|....
T Consensus 202 ~~~~~~~~vi~De~Y~~~~ 220 (412)
T d1bw0a_ 202 LAEELRLPLFSDEIYAGMV 220 (412)
T ss_dssp HHHHHTCCEEEECTTTTCB
T ss_pred ccccCCeeeechhhHHHhc
Confidence 8999999999999998654
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=1.1e-06 Score=93.18 Aligned_cols=223 Identities=12% Similarity=0.056 Sum_probs=132.9
Q ss_pred HHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCceecccc
Q psy13453 26 KATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKVGGVL 100 (764)
Q Consensus 26 KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHVDa~l 100 (764)
..+...+... ..++.+.....|....++.+.+.. +-+++.+--++.+|++.||+++++ ++++||||..
T Consensus 111 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~n~tG~i~pi~~i~~~~~~~g~~~~vD~~q 183 (388)
T d1h0ca_ 111 DIGERIGARV---HPMTKDPGGHYTLQEVEEGLAQHK----PVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVA 183 (388)
T ss_dssp HHHHHHC--C---BCCBCCTTCCCCHHHHHHHHHHHC----CSEEEEESEETTTTEECCCTTHHHHHHTTTCEEEEECTT
T ss_pred cccccccccc---cccccCCccccchHHHHHHhccCC----cceEEEeeeeeccccccCHHHHHHHhhcccccceecccc
Confidence 3344455544 677778888999999998888752 223357788899999999999886 8899999942
Q ss_pred c-------------------------cccceeeeecCCCccccc-------cccccc------cCCc----c-cCCCCcc
Q psy13453 101 R-------------------------RVYSSCLVPRGQKSLRTT-------VLFHFL------FQHW----Q-IPLGRRF 137 (764)
Q Consensus 101 ~-------------------------~~y~s~ll~rd~~~l~~~-------~s~~~d------~~d~----t-le~SRr~ 137 (764)
. .+.+..+++..+..+... .+...+ +..+ . -.++-..
T Consensus 184 s~g~~~~d~~~~~~D~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 263 (388)
T d1h0ca_ 184 SLGGTPLYMDRQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPV 263 (388)
T ss_dssp TTTTSCCCTTTTTCSEEEEESSSTTCCCTTCEEEEECHHHHHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCH
T ss_pred ccccccccccccccceecccccccccCCCceEEEeecHHHHHhhhhccccccccccccchhhhhhhhccccccccccccH
Confidence 1 111122222221111100 000000 0000 0 0111122
Q ss_pred cHH-HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC---ceeEEEEeeccccccccccccCccCCcc
Q psy13453 138 RAL-KLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS---MGLVCFRLKVRFWDKLDNLFGTISFGDN 213 (764)
Q Consensus 138 ~AL-klWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~---l~iV~Fry~P~~~~~~~~~~~~~~~~~d 213 (764)
.++ .+..++..+-..|...+-++..+++.++.+.+++.....+..++. .++++|++. ++ .+
T Consensus 264 ~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~g~~~~~~~~~~rs~~i~~~~~p-~~--------------~~ 328 (388)
T d1h0ca_ 264 ISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTTVAVP-AG--------------YD 328 (388)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECC-TT--------------CC
T ss_pred HHHHHHHHHHHHHHHhccccccccccchhHHHHHHHhhcCcccccCCHHHcCCeEEEEECC-CC--------------CC
Confidence 222 455666666677788888888999999999998864333333443 357889763 21 11
Q ss_pred HHHHHHHHHHHhc-CcEEEE-eceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHcc
Q psy13453 214 DLNKAVYDRIIAR-KVIYIV-KGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLRG 273 (764)
Q Consensus 214 ~~n~~L~~~L~~~-G~~~vs-~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~~ 273 (764)
..++.++|.++ |...-+ ...+.+ ..+|+..+.+.++.+||+.+++.|+++.+++.++
T Consensus 329 --~~~~~~~L~~~~gI~v~~G~~~~~~-~~iRis~~g~~~t~edid~li~aL~~~L~~l~k~ 387 (388)
T d1h0ca_ 329 --WRDIVSYVIDHFDIEIMGGLGPSTG-KVLRIGLLGCNATRENVDRVTEALRAALQHCPKK 387 (388)
T ss_dssp --HHHHHHHHHHHHCEECEECCGGGTT-TEEEEECCGGGCSHHHHHHHHHHHHHHHHHSCCC
T ss_pred --HHHHHHHHHhcCCEEEeCCchhhcC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 13566666655 543222 222333 4799976667789999999999999998876543
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=98.34 E-value=2.3e-06 Score=90.45 Aligned_cols=220 Identities=8% Similarity=-0.016 Sum_probs=133.0
Q ss_pred eeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-------CCC
Q psy13453 21 IYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-------NGP 93 (764)
Q Consensus 21 ~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-------~~w 93 (764)
++.+.+++.-.|... +.||+++++++|+++++++|++++ -+++-|..++.+|.+.|++++++ +..
T Consensus 102 ~~~~~~~~~~~g~~v---~~vp~~~~~~id~~~l~~~i~~~t-----~lv~is~v~~~tG~~~~~~~i~~~~~~~~~~~~ 173 (376)
T d1eg5a_ 102 VLETMKYLSMKGFKV---KYVPVDSRGVVKLEELEKLVDEDT-----FLVSIMAANNEVGTIQPVEDVTRIVKKKNKETL 173 (376)
T ss_dssp HHHHHHHHHHTTCEE---EECCBCTTSCBCHHHHHHHCCTTE-----EEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCE
T ss_pred hHHHHHHHHhcCCEE---EEEcCCCCCeECHHHHHHhcCCCc-----eEEEEECCccccceeeeehhhhhhhhhcccCce
Confidence 355566666778766 999999999999999999998642 24479999999999999999775 667
Q ss_pred ceecccc--------------------cccc----c-eeeeecCCCccccccccccccCCcccCCCCcccHHHHHHHHHH
Q psy13453 94 LKVGGVL--------------------RRVY----S-SCLVPRGQKSLRTTVLFHFLFQHWQIPLGRRFRALKLWMTLRS 148 (764)
Q Consensus 94 lHVDa~l--------------------~~~y----~-s~ll~rd~~~l~~~~s~~~d~~d~tle~SRr~~ALklWatL~~ 148 (764)
+.|||.. .+++ + ++++++....+...+ ...........+.....+.........
T Consensus 174 ~~vD~~q~~g~~~~d~~~~~~D~~~~s~~K~~gp~G~~~l~~~~~~~~~p~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (376)
T d1eg5a_ 174 VHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGVPIRPLI-HGGGQERGLRSGTQNVPGIVGAARAME 252 (376)
T ss_dssp EEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTSCTTCEEEEECTTSCCCCSB-CSSCTTTTTBCSCCCHHHHHHHHHHHH
T ss_pred eEEEeeeccccccccccccCccceecccceeecCCCceeEEeccCcccCCcc-cCCCCcccccCCcccchhhhhHHHHhh
Confidence 7999842 1221 1 234443332221110 000011111122223333333444444
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeC--CCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhc
Q psy13453 149 YGLKGLQAYLRKHISLAKKFADLVEQDDRFELVC--PPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIAR 226 (764)
Q Consensus 149 lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~--~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~ 226 (764)
..................++.+.++......+.. .....++.|+... .+ ...+...|.+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~--~~~~~~~L~~~ 314 (376)
T d1eg5a_ 253 IAVEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVSFPN----------------IR--GSTLQNLLSGY 314 (376)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEEEECTT----------------CC--HHHHHHHHHHT
T ss_pred ccccchhhhhhhhhhhhhhhccccccccccccccccccccceeeeccCC----------------CC--HHHHHHHHhhC
Confidence 5566677777788888889999998765544433 2334556665421 11 13455556666
Q ss_pred CcEEEEec-----e------e--CC------eeEEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13453 227 KVIYIVKG-----S------F--QD------RLFMRFAICSSQTEESDVQLGWNEIRTATE 268 (764)
Q Consensus 227 G~~~vs~t-----~------l--~g------~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~ 268 (764)
|...-+.. . + .| ..++|+++ +..+|++|||.+++.|+++..
T Consensus 315 gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~-~~ynt~edid~l~~~L~~iv~ 374 (376)
T d1eg5a_ 315 GIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISL-CKYNTEEEVDYFLKKIEEILS 374 (376)
T ss_dssp TEECBC------------CHHHHTTCCHHHHHHEEEEEC-CTTCCHHHHHHHHHHHHHHHH
T ss_pred CeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEEEec-CCCCCHHHHHHHHHHHHHHHh
Confidence 65321110 0 0 01 23699974 567789999999999999864
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.31 E-value=2.8e-06 Score=92.55 Aligned_cols=174 Identities=18% Similarity=0.086 Sum_probs=120.2
Q ss_pred ccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceE
Q psy13453 554 WLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633 (764)
Q Consensus 554 ~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~v 633 (764)
|...-...++|..+++...++||.+.... ..-+=.-+||.||+.+..+-.. +. . .=+.
T Consensus 69 y~G~~~iD~iE~la~~ra~~lF~~~~~~~------~anVqp~SGs~An~av~~all~---pg------------D-~im~ 126 (470)
T d1rv3a_ 69 YGGTEHIDELETLCQKRALQAYGLDPQCW------GVNVQPYSGSPANFAVYTALVE---PH------------G-RIMG 126 (470)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHTTCCTTTE------EEECCCSSHHHHHHHHHHHHTC---TT------------C-EEEE
T ss_pred cCCchhHHHHHHHHHHHHHHHhCCChhhc------cccccccCCccHHHHHHHHhcC---CC------------C-eEee
Confidence 34456788999999999999999975310 1123346889999887664311 10 0 0011
Q ss_pred EEecCCcchhHHHH-------HHhCCCceEEEecC-CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHH
Q psy13453 634 AYTSDQSNSSVEKS-------AIIGDVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEE 705 (764)
Q Consensus 634 i~~S~~aH~Sv~kA-------a~~lGl~v~~Vp~d-~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~e 705 (764)
+=.+.-.|.|--.. +.-...+....++| +++.||.+++++..++. +|-+|+ +|.+.+--.-|+++
T Consensus 127 ~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~~~~IDyd~l~~~a~~~-----kPklIi--~G~S~y~r~~d~~~ 199 (470)
T d1rv3a_ 127 LDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLF-----HPKLII--AGTSCYSRNLDYGR 199 (470)
T ss_dssp ECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHH-----CCSEEE--ECCSSCCSCCCHHH
T ss_pred eccccCCcccccccccCCCcccccceeEeeEEEEecccCcccHHHHHHHHHhh-----CcceEe--echhhccccCCHHH
Confidence 22344556554211 11112356677888 45999999999998765 365664 56666667779999
Q ss_pred HHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcC
Q psy13453 706 LGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD 759 (764)
Q Consensus 706 Ia~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~ 759 (764)
+++||++.|.+|++|+||-++++....+..- ++.||.+|.+.||.|..|.|
T Consensus 200 ~reIad~vga~l~~D~aH~aGLIA~g~~~sP---l~~aDvvt~tTHKtlrGPrg 250 (470)
T d1rv3a_ 200 LRKIADENGAYLMADMAHISGLVVAGVVPSP---FEHCHVVTTTTHKTLRGCRA 250 (470)
T ss_dssp HHHHHHHTTCEEEEECTTTHHHHHHTSSCCG---GGTCSEEEEESSGGGCCCSC
T ss_pred HHHHHhccCCeEEecchhhhhhccccccCCh---hheeeeeeeehhhhccCCcc
Confidence 9999999999999999998877665544433 35679999999999999987
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=98.30 E-value=3.9e-06 Score=89.57 Aligned_cols=136 Identities=10% Similarity=-0.037 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
.++-+.+.+|+.+..|++-+ ....++|+|+++++.+++.+.. .+...|++..-.
T Consensus 69 ~~Lr~aia~~~~~~~g~~~~-------~~~I~vt~G~~~al~~~~~~~~-------------------~pgd~vi~~~p~ 122 (394)
T d1c7na_ 69 EEYKKTVKKWMKDRHQWDIQ-------TDWIINTAGVVPAVFNAVREFT-------------------KPGDGVIIITPV 122 (394)
T ss_dssp HHHHHHHHHHHHHHHCCCCC-------GGGEEEESSHHHHHHHHHHHHC-------------------CTTCEEEECSSC
T ss_pred HHHHHHHHHHHHHhcCCCCC-------CcceEeeccchhhhhhhhcccc-------------------ccccccccccCc
Confidence 47888899999999888542 2468899999999888776421 112246667777
Q ss_pred chhHHHHHHhCCCceEEEecC---CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccHHHHHHHHHhcC
Q psy13453 641 NSSVEKSAIIGDVPVRQLRSD---DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLEELGPICQEYN 714 (764)
Q Consensus 641 H~Sv~kAa~~lGl~v~~Vp~d---~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~eIa~i~~~~g 714 (764)
.+....+....|...+.++.+ ..+.+|.+.++..+... .+-+++.+..++.||.+ +.+++|+++|++|+
T Consensus 123 ~~~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~~~-----~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~ 197 (394)
T d1c7na_ 123 YYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDK-----NNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSD 197 (394)
T ss_dssp CTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCT-----TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSS
T ss_pred ccchhhHHhhhhhcccccccccccccccchhhhhhhhhccc-----cceEEEecccccccceeccHHHhhhhhccccccc
Confidence 888888899999887777753 44568998888776321 24477788899999999 56777889999999
Q ss_pred CEEEEeccccccc
Q psy13453 715 IWLHVDAAYAGSA 727 (764)
Q Consensus 715 lwLHVDaA~Gg~~ 727 (764)
+|+++|-+|....
T Consensus 198 ~~ii~De~Y~~~~ 210 (394)
T d1c7na_ 198 LMLWSDEIHFDLI 210 (394)
T ss_dssp CEEEEECTTTTCB
T ss_pred eeEeccccccccc
Confidence 9999999998654
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=98.25 E-value=2.5e-06 Score=92.57 Aligned_cols=170 Identities=16% Similarity=0.124 Sum_probs=107.0
Q ss_pred CchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcE--EEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEE
Q psy13453 557 SPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGG--IIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVA 634 (764)
Q Consensus 557 sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~G--vfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi 634 (764)
.-...++|..+++...++||.+.. .+| +=.-+|+.||+.+..+-.+ +..+ =+.+
T Consensus 68 ~~~iD~iE~la~~ra~~lF~~~~a--------~w~vNVqp~SGs~An~av~~all~---pgD~-------------Im~l 123 (463)
T d2a7va1 68 AEVVDEIELLCQRRALEAFDLDPA--------QWGVNVQPYSGSPANLAVYTALLQ---PHDR-------------IMGL 123 (463)
T ss_dssp ---CTHHHHHHHHHHHHHTTCCTT--------TEEEECCCSSHHHHHHHHHHHHCC---SCEE-------------CCC-
T ss_pred chhHHHHHHHHHHHHHHHhCCCch--------hccCCccccccHHHHHHHHHHHcC---CCce-------------EEee
Confidence 345678999999999999999753 233 3345789999776653311 1100 0112
Q ss_pred EecCCcchhHHH-----HHHhCCC--ceEEEecC-CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHH
Q psy13453 635 YTSDQSNSSVEK-----SAIIGDV--PVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEEL 706 (764)
Q Consensus 635 ~~S~~aH~Sv~k-----Aa~~lGl--~v~~Vp~d-~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eI 706 (764)
=.+.-.|.|--. -....|. ......+| +++.||.+++++..++. +|-+|+ +|.+.+--.-|++++
T Consensus 124 ~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~IDyd~~~~~a~~~-----kPklIi--~G~S~y~r~~d~~~~ 196 (463)
T d2a7va1 124 DLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLF-----RPRLII--AGTSAYARLIDYARM 196 (463)
T ss_dssp ------------------------------CCBCTTTCSBCHHHHHHHHHHH-----CCSEEE--ECCSSCCSCCCHHHH
T ss_pred ccCcCcccccccccccccccceeeEeeeeeeeccCCCCcCcHHHHHHHHhhc-----CCceEE--ecccccccccCHHHH
Confidence 234455655432 2223444 34445566 67999999999998875 366664 466666677799999
Q ss_pred HHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCc
Q psy13453 707 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDC 760 (764)
Q Consensus 707 a~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~ 760 (764)
++||++.|.+|++|+||-++++....+..- ++.||.+|.+.||.|..|.+.
T Consensus 197 reIad~vga~l~~D~aH~aGLIA~g~~~sP---~~~aDvvt~tTHKTlrGPrgG 247 (463)
T d2a7va1 197 REVCDEVKAHLLADMAHISGLVAAKVIPSP---FKHADIVTTTTHKTLRGARSG 247 (463)
T ss_dssp HHHHHHTTCEEEEECGGGHHHHHTTSSCCG---GGTCSEEEEESSGGGCSCSCE
T ss_pred HHHhhcccceEEechhhhhHHhhhhhhcCh---hhhhhhhhchhhhhhcCCCce
Confidence 999999999999999998887766544433 456899999999999999863
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=98.23 E-value=5.4e-06 Score=89.14 Aligned_cols=143 Identities=13% Similarity=0.063 Sum_probs=105.2
Q ss_pred ccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceE
Q psy13453 554 WLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633 (764)
Q Consensus 554 ~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~v 633 (764)
|.......++=+.+.+|+.+..|.+-. .....++|+|+++++..++.+.. . +...
T Consensus 62 Y~~~~G~~~lReaiA~~~~~~~g~~~~------p~~~I~it~G~~~al~~~~~~l~----~---------------~gd~ 116 (418)
T d2r5ea1 62 YTRGFGHPRLVQALSKLYSQLVDRTIN------PMTEVLVTVGAYEALYATIQGHV----D---------------EGDE 116 (418)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHTSCCC------TTTSEEEESHHHHHHHHHHHHHC----C---------------TTCE
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCC------ccceEEEcCCCchhhhhhhhhcc----c---------------cccc
Confidence 444444556667788899999887632 11358999999998876665421 1 1234
Q ss_pred EEecCCcchhHHHHHHhCCCceEEEecCCC----------CcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc--
Q psy13453 634 AYTSDQSNSSVEKSAIIGDVPVRQLRSDDN----------GVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD-- 701 (764)
Q Consensus 634 i~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~----------g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD-- 701 (764)
|++..-++......+...|..++.|+++.+ +.++.+++++..... +.+++.+..++.+|.+-
T Consensus 117 vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~p~NPtG~~~s~ 190 (418)
T d2r5ea1 117 VIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEK------TKMIIINTPHNPLGKVMDR 190 (418)
T ss_dssp EEEEESCCTTHHHHHHHTTCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCCTT------EEEEEEESSCTTTCCCCCH
T ss_pred eeccccccchhhHHHHHcCCeEEEEEecccccccchhhhhhhhhHHHHhhhhhcc------ccceecCCcCccccccccH
Confidence 667777889999999999999999998633 357778777665433 44777788999999884
Q ss_pred -cHHHHHHHHHhcCCEEEEeccccccc
Q psy13453 702 -NLEELGPICQEYNIWLHVDAAYAGSA 727 (764)
Q Consensus 702 -pl~eIa~i~~~~glwLHVDaA~Gg~~ 727 (764)
.+++|+++|++|++|+..|.+|.-..
T Consensus 191 e~~~~l~~~a~~~~~~iI~De~y~~~~ 217 (418)
T d2r5ea1 191 AELEVVANLCKKWNVLCVSDEVYEHMV 217 (418)
T ss_dssp HHHHHHHHHHHHHTCEEEEECTTTTCB
T ss_pred HHHHHHhhhhhcCCeeeecccchhhhc
Confidence 56668888999999999999997643
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=98.18 E-value=1.9e-05 Score=83.14 Aligned_cols=191 Identities=10% Similarity=0.035 Sum_probs=124.5
Q ss_pred HHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhcc
Q psy13453 539 VGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQS 618 (764)
Q Consensus 539 lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~ 618 (764)
+-+.+...++.....|.......++-+.+.+|+.+..|.+.+ ....++|+|++++...++.+.. .
T Consensus 46 i~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~-------~~~i~~t~G~~~al~~~~~~l~----~---- 110 (375)
T d1o4sa_ 46 VVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDIS-------PDQVVVTNGAKQALFNAFMALL----D---- 110 (375)
T ss_dssp HHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCC-------GGGEEEESHHHHHHHHHHHHHC----C----
T ss_pred HHHHHHHHHhcCCcCCCCCcCCHHHHHHHHhhhhhccccccc-------cccccccCcHHHHHHHHHHHHh----C----
Confidence 334444444444444655555678888899999988887543 2468999999998766554321 1
Q ss_pred CCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecC--CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCC
Q psy13453 619 KNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTG 696 (764)
Q Consensus 619 ~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d--~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~ 696 (764)
+...|++.+-+.+.....+...|..+..++++ ..+.+|.+.++....+. +-+++.+..++.
T Consensus 111 -----------~gd~vlv~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~nP~NP 173 (375)
T d1o4sa_ 111 -----------PGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGK------TKAVLINSPNNP 173 (375)
T ss_dssp -----------TTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTT------EEEEEEESSCTT
T ss_pred -----------CCCEEEEccCccccchhhhhccccccccccccccccccchhHHHHHhhccC------ccEEEEeCCCCC
Confidence 11134555556666677777888888887776 45678888877654443 347778888999
Q ss_pred cccc---ccHHHHHHHHHhcCCEEEEeccccccccccchhh--hhhcCCCcccEEEEcCCccCCCC-cCcee
Q psy13453 697 TCAF---DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYA--HLKRGLEYVDSFDFNTHKWLLVN-FDCSA 762 (764)
Q Consensus 697 ~Gai---Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r--~~l~gie~aDSit~d~HK~l~~P-~~~g~ 762 (764)
||.+ +.+++|.++|++|++|+..|.+|+-...-.+... .....-+++ -+..++-|.++.| +=+|.
T Consensus 174 TG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~-i~~~S~SK~~~l~G~R~G~ 244 (375)
T d1o4sa_ 174 TGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRI-VYINGFSKSHSMTGWRVGY 244 (375)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTE-EEEEESTTTTTCGGGCCEE
T ss_pred ccCCCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCE-EEEeechhhccCCcccccc
Confidence 9988 5777888889999999999998876433221111 111222222 4567889987755 44443
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=98.13 E-value=8.2e-06 Score=86.62 Aligned_cols=159 Identities=12% Similarity=0.069 Sum_probs=114.1
Q ss_pred HHHHHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhc
Q psy13453 538 IVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQ 617 (764)
Q Consensus 538 ~lad~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~ 617 (764)
.+-+.+...++.....|.......++=+.+.+|+.+..|.+.. .....++|+|+++++..++.+..+
T Consensus 43 ~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~------~~~~I~vt~G~~~al~~~~~~l~~------- 109 (382)
T d1u08a_ 43 YLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPD------ADSDITVTAGATEALYAAITALVR------- 109 (382)
T ss_dssp HHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCC------TTTTEEEESSHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHHHhCCCCC------CCceEEeccchHHHHHHHHhhccc-------
Confidence 3445555555554445666666677878888999998887542 113578999999998777653311
Q ss_pred cCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecC-CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCC
Q psy13453 618 SKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTG 696 (764)
Q Consensus 618 ~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d-~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~ 696 (764)
+...|++.+-..+....++...|..+..++.+ ..+.+|.++|++.+.+. +-+++.+..++.
T Consensus 110 ------------~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~i~l~~P~NP 171 (382)
T d1u08a_ 110 ------------NGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSER------TRLVILNTPHNP 171 (382)
T ss_dssp ------------TTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTT------EEEEEEESSCTT
T ss_pred ------------ccceEEEecccccchhhhhhhccccceecccccccccCCHHHHhhhhccC------ccEEEECCCCcc
Confidence 12246667777777888888899888888876 45678999998876554 347778889999
Q ss_pred ccccc---cHHHHHHHHHhcCCEEEEeccccccc
Q psy13453 697 TCAFD---NLEELGPICQEYNIWLHVDAAYAGSA 727 (764)
Q Consensus 697 ~GaiD---pl~eIa~i~~~~glwLHVDaA~Gg~~ 727 (764)
+|++- .+++|.++|+++++++..|..|.-..
T Consensus 172 tG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~ 205 (382)
T d1u08a_ 172 SATVWQQADFAALWQAIAGHEIFVISDEVYEHIN 205 (382)
T ss_dssp TCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCB
T ss_pred cccccccccchhhhhhhccccceeeeecchhhcc
Confidence 99985 45666677889999999999877543
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=6.5e-06 Score=88.60 Aligned_cols=196 Identities=10% Similarity=0.005 Sum_probs=126.7
Q ss_pred HHHHHHHHHhhccc--CccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhh
Q psy13453 537 SIVGDMLSGAFGLI--GFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMIN 614 (764)
Q Consensus 537 ~~lad~l~~~lN~n--~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~ 614 (764)
..+-+.+...+... ...|.......++-+.+.+|+.+.+|++-+ .....++|+|+++++..++.+.. .
T Consensus 41 ~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~------~~~~I~it~G~~~al~~~~~~l~----~ 110 (418)
T d1w7la_ 41 DFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEID------PLRNVLVTVGGYGALFTAFQALV----D 110 (418)
T ss_dssp HHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCC------HHHHEEEESHHHHHHHHHHHHHC----C
T ss_pred HHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHHHHHhCCCCC------cccceeeccCcHHHHHHHHHhhc----c
Confidence 44555565555432 223555556677888888999998888632 00257899999998776654321 1
Q ss_pred hhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecC------------CCCcccHHHHHHHHHHhhhcC
Q psy13453 615 HWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSD------------DNGVLRGDALLTAVKEDLAKG 682 (764)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d------------~~g~md~~~Le~~I~~~~~~G 682 (764)
+...|++..-........+...|.+++.++.+ .++.+|.+++...+.+.
T Consensus 111 ---------------~g~~vlv~~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---- 171 (418)
T d1w7la_ 111 ---------------EGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSR---- 171 (418)
T ss_dssp ---------------TTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECC---CCSEEGGGEECCHHHHHHHCCTT----
T ss_pred ---------------CCceeeccccccchhHHHHHHcCCEeeccccccccccccccccccCcccchhhhhcccccc----
Confidence 12245666666667777888899888777753 34567777766654433
Q ss_pred CCceEEEEeeccCCcccc---ccHHHHHHHHHhcCCEEEEeccccccccccchhhh--hhcCCCcccEEEEcCCccCCCC
Q psy13453 683 LIPCCLIATLGTTGTCAF---DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAH--LKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 683 ~~p~~VvataGTT~~Gai---Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~--~l~gie~aDSit~d~HK~l~~P 757 (764)
..+++.+..++.+|.+ +.+++|+++|++|++|+..|.+|.....--++... .+.+...=--+..++.|.++.|
T Consensus 172 --~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~p 249 (418)
T d1w7la_ 172 --TKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSAT 249 (418)
T ss_dssp --EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCG
T ss_pred --ccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccccCC
Confidence 4578888999999988 57888899999999999999999775422111111 1111111134567888877655
Q ss_pred -cCceee
Q psy13453 758 -FDCSAM 763 (764)
Q Consensus 758 -~~~g~l 763 (764)
.-+|.+
T Consensus 250 G~RvG~~ 256 (418)
T d1w7la_ 250 GWKVGWV 256 (418)
T ss_dssp GGCCEEE
T ss_pred CCccccc
Confidence 555543
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=98.12 E-value=1.2e-05 Score=84.06 Aligned_cols=155 Identities=14% Similarity=0.114 Sum_probs=95.6
Q ss_pred HHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHH
Q psy13453 566 LVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVE 645 (764)
Q Consensus 566 ~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~ 645 (764)
++++++++.+|.+++ ..++|+|+++++...+.+ ... +..+|.+.. +....
T Consensus 61 ~Lr~aia~~~~v~~~---------~I~~~~g~~~~~~~~~~~-----~~~--------------~~~~v~~p~--~~~~~ 110 (355)
T d1lc5a_ 61 HLHQALARHHQVPAS---------WILAGNGETESIFTVASG-----LKP--------------RRAMIVTPG--FAEYG 110 (355)
T ss_dssp HHHHHHHHHHTSCGG---------GEEEESSHHHHHHHHHHH-----HCC--------------SEEEEEESC--CTHHH
T ss_pred HHHHHHHHHhCCCHH---------HEEecccHHHHHHHHHhh-----hcc--------------ccccccCCc--cceec
Confidence 356677788888774 567778777765544331 111 122333332 33344
Q ss_pred HHHHhCCCceEEEecC-CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc---cHHHHHHHHHhcCCEEEEec
Q psy13453 646 KSAIIGDVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD---NLEELGPICQEYNIWLHVDA 721 (764)
Q Consensus 646 kAa~~lGl~v~~Vp~d-~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD---pl~eIa~i~~~~glwLHVDa 721 (764)
......+.+++.+|++ +++....+++++++.+. +-+|+.+..++.+|.+- .+.+|+++|++|++|+.+|-
T Consensus 111 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De 184 (355)
T d1lc5a_ 111 RALAQSGCEIRRWSLREADGWQLTDAILEALTPD------LDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDE 184 (355)
T ss_dssp HHHHHTTCEEEEEECCGGGTTCCCTTHHHHCCTT------CCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred cccccccccceeeeeeccCCccceeeeeeccccc------cceeeeecccCcccccchhhhhhhhhhhcccccccccccc
Confidence 5566778889999986 33333334455544332 34777788899999985 47778888999999999999
Q ss_pred cccccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 722 AYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 722 A~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
+|..+.............. .-.-+..++.|+++.|
T Consensus 185 ~y~~~~~~~~~~~~~~~~~-~~~i~~~S~SK~~~l~ 219 (355)
T d1lc5a_ 185 AFIDFIPHETGFIPALKDN-PHIWVLRSLTKFYAIP 219 (355)
T ss_dssp TTGGGSTTCCCSGGGCTTC-TTEEEEEESTTTTTCT
T ss_pred ceeeeeeeccccccccccc-ccceeecccccccccc
Confidence 9976432222111111111 1236778999998755
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=98.06 E-value=6.6e-06 Score=82.06 Aligned_cols=95 Identities=14% Similarity=0.046 Sum_probs=75.9
Q ss_pred HccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcC
Q psy13453 148 SYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARK 227 (764)
Q Consensus 148 ~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G 227 (764)
.+...++.+..++...+++++.+.+++ .+++++.+++.++|.++.. ....++|.+++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~p~~~~~v~~~~~----------------------~~~~~~l~~~~ 302 (340)
T d1svva_ 246 LMKDNLFFELGAHSNKMAAILKAGLEA-CGIRLAWPSASNQLFPILE----------------------NTMIAELNNDF 302 (340)
T ss_dssp HTSTTHHHHHHHHHHHHHHHHHHHHHH-TTCCBSSCCSSSEECBEEE----------------------HHHHHHHTTTE
T ss_pred HhhhhHHHHHHHHHHHHHhhhHHHHhc-CCCeeecCCCceEEEEeCC----------------------HHHHHHHHHhh
Confidence 356778888899999999999999997 6999998888888766432 13456677777
Q ss_pred cEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 228 VIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 228 ~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
......+...+..++|+| +++.||+++||++++.|+++
T Consensus 303 ~~~~~~~~~~~~~~vR~s-~~~~~t~edid~~l~~l~~l 340 (340)
T d1svva_ 303 DMYTVEPLKDGTCIMRLC-TSWATEEKECHRFVEVLKRL 340 (340)
T ss_dssp ECEEEEEETTTEEEEEEE-CCTTCCHHHHHHHHHHHHHC
T ss_pred hhhcccccCCCCcEEEEE-CCCCCCHHHHHHHHHHHhcC
Confidence 666666677788999996 58999999999999999863
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=98.03 E-value=2.9e-05 Score=81.31 Aligned_cols=161 Identities=13% Similarity=-0.010 Sum_probs=109.5
Q ss_pred HHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHH
Q psy13453 566 LVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVE 645 (764)
Q Consensus 566 ~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~ 645 (764)
++.+++++.+|++++ ..++|+|+++++.+++.+.. . .++-+|++..-+.....
T Consensus 60 ~Lr~~ia~~~gv~pe---------~I~it~Gs~eai~~~~~~~~----~--------------pgd~~Vl~~~P~y~~~~ 112 (354)
T d1fg7a_ 60 AVIENYAQYAGVKPE---------QVLVSRGADEGIELLIRAFC----E--------------PGKDAILYCPPTYGMYS 112 (354)
T ss_dssp HHHHHHHHHHTSCGG---------GEEEESHHHHHHHHHHHHHC----C--------------TTTCEEEECSSSCTHHH
T ss_pred HHHHHHHHHhCCChH---------HeeeccCchHHHHHHHHHhh----c--------------cccccccccccccccch
Confidence 567889999999874 68999999999877665331 1 01235777777788888
Q ss_pred HHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHH--HhcCCEEEEeccc
Q psy13453 646 KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPIC--QEYNIWLHVDAAY 723 (764)
Q Consensus 646 kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~--~~~glwLHVDaA~ 723 (764)
.++...|..++.++.++++.+|++++++++.+ +-+|+.+..++.+|.+-+-+++..++ .+++.++.+|-+|
T Consensus 113 ~~~~~~g~~v~~~~~~~~~~~d~~~l~~~~~~-------~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~~~~~~iidd~~ 185 (354)
T d1fg7a_ 113 VSAETIGVECRTVPTLDNWQLDLQGISDKLDG-------VKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAY 185 (354)
T ss_dssp HHHHHHTCEEEECCCCTTSCCCHHHHHTSCTT-------EEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTT
T ss_pred hhhhccCceeeccccccccccchhhhhhcccc-------cceeeccCCCccceeEeeecccccccccccccccccccccc
Confidence 88999999999999999999999999876532 34788888999999996555444432 2357777788877
Q ss_pred cccccccchhhhhhcCCCcccEEEEcCCccCCCC-cCcee
Q psy13453 724 AGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSA 762 (764)
Q Consensus 724 Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~ 762 (764)
.-+.. +...........--.+.-++.|.++.| +-+|.
T Consensus 186 ~~f~~--~~~~~~~~~~~~~~iv~~S~SK~~~laGlRiGy 223 (354)
T d1fg7a_ 186 IEFCP--QASLAGWLAEYPHLAILRTLSKAFALAGLRCGF 223 (354)
T ss_dssp GGGSG--GGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEE
T ss_pred hhhcc--ccccchhhcccccceEEeCCccccCCCcccccc
Confidence 64321 111111111111234556999998865 33443
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=98.02 E-value=1.1e-05 Score=85.38 Aligned_cols=179 Identities=14% Similarity=0.027 Sum_probs=117.4
Q ss_pred CccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccC
Q psy13453 551 GFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRN 630 (764)
Q Consensus 551 ~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~ 630 (764)
...|.......++=+.+.+|+.+..|++-+ ....++|+|++++...++.+-. . +
T Consensus 57 ~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~-------~~~I~it~G~~~~l~~~~~~l~----~---------------~ 110 (389)
T d2gb3a1 57 VVYYSHSAGIWELREAFASYYKRRQRVDVK-------PENVLVTNGGSEAILFSFAVIA----N---------------P 110 (389)
T ss_dssp SCCCCCTTCCHHHHHHHHHHHHHTSCCCCC-------GGGEEEESHHHHHHHHHHHHHC----C---------------T
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhcCCCcc-------cceEEecccccccccccccccc----c---------------C
Confidence 344555555667778888999988887532 2468899999998766554321 1 1
Q ss_pred ceEEEecCCcchhHHHHHHhCCCceEEEecCCCC-cccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccHHHH
Q psy13453 631 KLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNG-VLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLEEL 706 (764)
Q Consensus 631 ~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g-~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~eI 706 (764)
+..|++..-..+.....+...|..++.++.+.++ ..+.+.+...+.+ .+.+++.+..++.||.+ +.+++|
T Consensus 111 gd~V~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~nP~NPtG~~~s~~~~~~i 184 (389)
T d2gb3a1 111 GDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFINE------RTKGIVLSNPCNPTGVVYGKDEMRYL 184 (389)
T ss_dssp TCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCCCTTGGGGCCT------TEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred CCeEEEeCCCCccccccccccCccccccccccccccchhhhhhhhccc------CccEEEeCCCCccccccchHHHHHHH
Confidence 2245566667777778888899998899987543 4444444433322 34477778889999987 568889
Q ss_pred HHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC-cCcee
Q psy13453 707 GPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSA 762 (764)
Q Consensus 707 a~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~ 762 (764)
.++|++|++|+..|-+|+....-.... ........-.-+..+..|.++.| .=+|.
T Consensus 185 ~~~a~~~~~~iI~De~y~~~~~~~~~~-~~~~~~~~~~~v~~s~sK~~~~~GlRiG~ 240 (389)
T d2gb3a1 185 VEIAERHGLFLIVDEVYSEIVFRGEFA-SALSIESDKVVVIDSVSKKFSACGARVGC 240 (389)
T ss_dssp HHHHHHTTCEEEEECTTTTCBCSSCCC-CGGGSCCTTEEEEEESTTTTTCGGGCCEE
T ss_pred HhhcccCCEEEEEeccccccccccccc-cccccccccccccccccccccCcccceee
Confidence 999999999999999997754332211 11122222244566788888876 44453
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=97.93 E-value=4e-05 Score=82.02 Aligned_cols=150 Identities=15% Similarity=0.103 Sum_probs=109.8
Q ss_pred cCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEE
Q psy13453 555 LSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVA 634 (764)
Q Consensus 555 ~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi 634 (764)
...|-...+|+ .+++|-|.. .++.+++|..|+..++.+.. + +...|
T Consensus 56 ~~nPT~~~LE~----~la~LEg~~-----------~a~~~~SGmaAi~~~l~~l~----~---------------~Gd~v 101 (392)
T d1gc0a_ 56 ISNPTLNLLEA----RMASLEGGE-----------AGLALASGMGAITSTLWTLL----R---------------PGDEV 101 (392)
T ss_dssp -CCHHHHHHHH----HHHHHHTCS-----------EEEEESSHHHHHHHHHHHHC----C---------------TTCEE
T ss_pred CCChHHHHHHH----HHHHHhCCc-----------ceeehhhHHHHHHHHHHhhc----c---------------CCCee
Confidence 45677778887 467776653 35778888877766655321 1 12356
Q ss_pred EecCCcchhHHHHHHh----CCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHH
Q psy13453 635 YTSDQSNSSVEKSAII----GDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPIC 710 (764)
Q Consensus 635 ~~S~~aH~Sv~kAa~~----lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~ 710 (764)
++++.......+-+.. +|+.+..++. .|+++++++|+++++ +|.+=..++.+.-+-||++|+++|
T Consensus 102 l~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~-----~d~~~~~~ai~~~t~------lv~~Esp~NP~l~v~Di~~i~~ia 170 (392)
T d1gc0a_ 102 LLGNTLYGCTFAFLHHGIGEFGVKLRHVDM-----ADLQALEAAMTPATR------VIYFESPANPNMHMADIAGVAKIA 170 (392)
T ss_dssp EEESSCCSHHHHHHHHTGGGGTCEEEEECT-----TCHHHHHHHCCTTEE------EEEEESSCTTTCCCCCHHHHHHHH
T ss_pred ecccccchhhhhhhhhhhccCCcccccCCc-----cCHHHHHHhCCCCCe------EEEecccccceeeecchHHHHHHH
Confidence 7777766665554433 5888887764 358999999877644 888899999999999999999999
Q ss_pred HhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCC
Q psy13453 711 QEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLV 756 (764)
Q Consensus 711 ~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~ 756 (764)
+++|+.+.||..|+...+.-| +. -| ||-+.-|..|+++.
T Consensus 171 ~~~g~~~vvDnT~atP~~~~P-l~---~G---aDivihS~TKyi~G 209 (392)
T d1gc0a_ 171 RKHGATVVVDNTYCTPYLQRP-LE---LG---ADLVVHSATKYLSG 209 (392)
T ss_dssp GGGTCEEEEECTTTHHHHCCG-GG---GT---CSEEEEETTTTTTC
T ss_pred HhcCCEEEEecCccCccccCh-HH---hC---CCEEEEecceeecC
Confidence 999999999999987655433 22 23 69999999999874
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=97.87 E-value=0.0002 Score=75.66 Aligned_cols=200 Identities=12% Similarity=0.032 Sum_probs=120.1
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCCccccccCCCCChHHHHHHHHHHhhccc-CccccCCchHHHHHHHHHHHHHHHcCCC
Q psy13453 500 EDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLI-GFSWLSSPACTELEVLVMNWLGKALGLP 578 (764)
Q Consensus 500 ~~~~~il~~l~~~i~~~~~~~~~P~~~~~~~~~~~~~~~lad~l~~~lN~n-~~~~~~sp~~t~lE~~v~~~la~llG~p 578 (764)
.+.-.+++.+++.-.++..+-...-|.+--..++.+++ +.+.+....+.. ...|......-++=+.+.+++.+.-+..
T Consensus 11 d~i~~l~~~~~~d~~~~~InL~iG~~~d~~g~~~~~~~-V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~ 89 (394)
T d2ay1a_ 11 DKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRA-VHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKS 89 (394)
T ss_dssp CSHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHH-HHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCG
T ss_pred ChHHHHHHHHhCCCCCCCEEccCCCccCCCCCCCCCHH-HHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhcccccc
Confidence 34556666666532222222222223222222233333 444444444332 2345555555666666777766543322
Q ss_pred ccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEE
Q psy13453 579 EEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQL 658 (764)
Q Consensus 579 ~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~V 658 (764)
. ....+.|+||+.+..+++..... .. +...|++++-.-..-...++..|.+++.+
T Consensus 90 ~--------~~~~~~~~~~~~~~~l~~~~~~~--~~---------------~gd~V~~p~p~~~~y~~~~~~~g~~~v~~ 144 (394)
T d2ay1a_ 90 E--------TTATLATVGGTGALRQALELARM--AN---------------PDLRVFVSDPTWPNHVSIMNFMGLPVQTY 144 (394)
T ss_dssp G--------GEEEEEEEHHHHHHHHHHHHHHH--HC---------------TTCCEEEEESCCHHHHHHHHHHTCCEEEE
T ss_pred c--------cccceeccCchHHHHHHHHHhhh--cC---------------CceEEEEecccccchHHHHHHcCCEEEEe
Confidence 2 13467777777665544433211 11 12246677666666677788899999999
Q ss_pred ecC--CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccHHHHHHHHHhcCCEEEEecccccccc
Q psy13453 659 RSD--DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLEELGPICQEYNIWLHVDAAYAGSAL 728 (764)
Q Consensus 659 p~d--~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~eIa~i~~~~glwLHVDaA~Gg~~l 728 (764)
|.+ ..+..+.+++++...... ....+++....++.||.+ +.+++|+++|++|++|+..|-+|.....
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~ 216 (394)
T d2ay1a_ 145 RYFDAETRGVDFEGMKADLAAAK---KGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGD 216 (394)
T ss_dssp ECEETTTTEECHHHHHHHHHTCC---TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSS
T ss_pred cccchhcccccchhHHHHHhhcc---cCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcc
Confidence 974 456778888777665432 235677778889999988 5688899999999999999999988643
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=97.86 E-value=4.5e-05 Score=82.72 Aligned_cols=111 Identities=20% Similarity=0.167 Sum_probs=81.3
Q ss_pred cccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCC-CCceeEEEEeeccccccccccccCccCCccH
Q psy13453 136 RFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCP-PSMGLVCFRLKVRFWDKLDNLFGTISFGDND 214 (764)
Q Consensus 136 r~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~-P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~ 214 (764)
..-++..|+-++++|.+|++++.++++.+|+|+++.|.+.++++++.+ +-+.-++++.. .+
T Consensus 324 ~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~~g~~~~~~~~~f~ef~v~~~---------------~~--- 385 (437)
T d1wyua1 324 QLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALP---------------KD--- 385 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECS---------------SC---
T ss_pred HHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhcCCeeccCCCCeeeEEEEECC---------------CC---
Confidence 345567899999999999999999999999999999999999997753 44555555321 01
Q ss_pred HHHHHHHHHHhcCcEE-EEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 215 LNKAVYDRIIARKVIY-IVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 215 ~n~~L~~~L~~~G~~~-vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
...+.++|.+.|... .....+-....+.++++--+ ++++||+|++.++++
T Consensus 386 -~~~i~k~L~d~G~~~~~~~~~~~~~~~lli~~TE~~-tkeeiD~~v~al~ei 436 (437)
T d1wyua1 386 -PEAVRRALAERGFHGATPVPREYGENLALFAATELH-EEEDLLALREALKEV 436 (437)
T ss_dssp -HHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTC-CHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhCCCCCCcccccCCCCCeEEEecCCCC-CHHHHHHHHHHHHHh
Confidence 245778888888721 11122334456888876554 689999999999875
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=97.86 E-value=0.00016 Score=77.37 Aligned_cols=150 Identities=14% Similarity=0.143 Sum_probs=110.8
Q ss_pred cCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEE
Q psy13453 555 LSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVA 634 (764)
Q Consensus 555 ~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi 634 (764)
...|-...+|+ .++.|-|.. .++++++|..|+..++.+. . .+...|
T Consensus 60 ~~nPT~~~LE~----~la~LEgg~-----------~a~~~sSGmaAi~~~l~~l----l---------------~~Gd~v 105 (397)
T d1y4ia1 60 LGNPTTDALEK----KLAVLERGE-----------AGLATASGISAITTTLLTL----C---------------QQGDHI 105 (397)
T ss_dssp TSCHHHHHHHH----HHHHHHTCS-----------EEEEESSHHHHHHHHHHHH----C---------------CTTCEE
T ss_pred CCCHHHHHHHH----HHHHHhCCc-----------cceeehHHHHHHHHHHhhc----c---------------CCCCee
Confidence 45677777776 556665543 3678888888776655432 1 123357
Q ss_pred EecCCcchhHHHHH----HhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHH
Q psy13453 635 YTSDQSNSSVEKSA----IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPIC 710 (764)
Q Consensus 635 ~~S~~aH~Sv~kAa----~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~ 710 (764)
+++...+....+-+ .-+|+.+..+..+ |++.++++|+++++ +|.+=..++.+.-+-||++|+++|
T Consensus 106 i~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd~~-----d~~~~~~~i~~~Tk------lv~~Esp~NP~l~v~Di~~i~~iA 174 (397)
T d1y4ia1 106 VSASAIYGCTHAFLSHSMPKFGINVRFVDAG-----KPEEIRAAMRPETK------VVYIETPANPTLSLVDIETVAGIA 174 (397)
T ss_dssp EEESSSCHHHHHHHHTHHHHTTCEEEEECTT-----SHHHHHHHCCTTEE------EEEEESSCTTTCCCCCHHHHHHHH
T ss_pred eeecccccccchhhhcccCCCceEeeccCCC-----CHHHHHHhcCCCCc------EEEecCCcccceeecccHHHHHHh
Confidence 77887776655543 3479998887653 58999999876544 888888999999999999999999
Q ss_pred HhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCC
Q psy13453 711 QEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLV 756 (764)
Q Consensus 711 ~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~ 756 (764)
+++|+++.||.+|+...+.-|- --| ||-+.-|.-|+++.
T Consensus 175 ~~~gi~~vvDnT~atP~~~~Pl----~~G---aDivihS~TKyi~G 213 (397)
T d1y4ia1 175 HQQGALLVVDNTFMSPYCQQPL----QLG---ADIVVHSVTKYING 213 (397)
T ss_dssp HHTTCEEEEECTTTCTTTCCGG----GGT---CSEEEEETTTTTTC
T ss_pred hcCCceEEecCcccCcccCcch----hcC---CCEEEEehhhhcCC
Confidence 9999999999999986655441 223 59999999999875
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=97.86 E-value=2.8e-06 Score=86.47 Aligned_cols=224 Identities=7% Similarity=-0.103 Sum_probs=122.9
Q ss_pred eeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEE-E-EeeCCcccccccCchh---hhc-----
Q psy13453 21 IYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMC-S-GYCGRTLHQDIQSLNA---PVS----- 90 (764)
Q Consensus 21 ~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~-V-atAGTT~~G~iDpi~~---ia~----- 90 (764)
|||....+...+.....++.++. +.+..|++.++..|...+.....+.. + -...+.+.|.+.|++. +++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 161 (343)
T d1m6sa_ 83 HIFWYEVGAMAVLSGVMPHPVPG-KNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEH 161 (343)
T ss_dssp HHHHSSTTHHHHHTCCEEEEECE-ETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHH
T ss_pred cceeeecccccccccceeecccc-ccCccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHHHHHhc
Confidence 34444433333333322344443 45789999999999887665544443 4 4445566666655554 443
Q ss_pred CCCceecccccccc---------------ceeeeecCCCccc--ccccc-cc-------ccCC-cccCCCCcccHHHHHH
Q psy13453 91 NGPLKVGGVLRRVY---------------SSCLVPRGQKSLR--TTVLF-HF-------LFQH-WQIPLGRRFRALKLWM 144 (764)
Q Consensus 91 ~~wlHVDa~l~~~y---------------~s~ll~rd~~~l~--~~~s~-~~-------d~~d-~tle~SRr~~ALklWa 144 (764)
++++|+|++..... ............- ..... .. .+.. ++...+........+.
T Consensus 162 g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 241 (343)
T d1m6sa_ 162 GINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGI 241 (343)
T ss_dssp TCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHH
T ss_pred CeEEEeccccccccccccccchhhhccccccccccccccccccccccccccHHHHhhhHhhCcccccccchhHHHHHhhh
Confidence 88999999531100 0011111110000 00000 00 0111 1222223333334444
Q ss_pred HHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHH
Q psy13453 145 TLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRII 224 (764)
Q Consensus 145 tL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~ 224 (764)
.......+.+++ ..+.++++.+.+.+..+.....+...++|.|...... . -..++.++|.
T Consensus 242 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------~--~a~~l~~~L~ 301 (343)
T d1m6sa_ 242 IALTKMVDRLKE----DHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLK--------------V--NAHGFIEALR 301 (343)
T ss_dssp HHHHHSSTTHHH----HHHHHHHHHHHHHHHTCBCCGGGCCSSEEEEECTTSS--------------S--CHHHHHHHHH
T ss_pred hhhhhhHHHHHH----HHHHHHHhhhHHHHhccCccCCCCCceEEEEEeCCCc--------------c--cHHHHHHHHH
Confidence 444443343433 3445556666666666666667777888888653211 1 1257899999
Q ss_pred hcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 225 ARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 225 ~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
++|+.... + +...+|+| +++++|+++||++++.++++.+++
T Consensus 302 ~~Gi~v~~---~-~~~~iRi~-~~~~~t~edid~~v~~l~~v~~~~ 342 (343)
T d1m6sa_ 302 NSGVLANA---V-SDTEIRLV-THKDVSRNDIEEALNIFEKLFRKF 342 (343)
T ss_dssp HHTEECEE---E-ETTEEEEE-CCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HCCCEEec---C-CCCEEEEE-CCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99975322 2 34579995 578899999999999999998875
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=97.82 E-value=6.7e-05 Score=81.33 Aligned_cols=247 Identities=7% Similarity=-0.089 Sum_probs=129.5
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCC--------cccHHHHHHHHHH---HhhC-CCCcEEEEeeCCcccccccCchh
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSE--------WLAYLTLRTIYES---FRKS-FLCPMCSGYCGRTLHQDIQSLNA 87 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~--------rmD~~aLe~~I~~---~~~~-G~~p~~VatAGTT~~G~iDpi~~ 87 (764)
.|.|+..++.+|+...-.++.+++|+.+ ++|.+.+++.+.+ ..+. .++..++.....+..|.+.|+++
T Consensus 115 ~H~Sv~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~ 194 (462)
T d1c4ka2 115 NHKSVYNSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHE 194 (462)
T ss_dssp CCHHHHHHHTTTTCCEEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHH
T ss_pred chHHHHHHHHHHhcCCceeeecccccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHH
Confidence 7999999999887655444556666655 3455555544322 1112 23333444555567899999999
Q ss_pred hhc-----CCCceeccccccc------cc----------------eeeeecCCCccccccccc-------------cccC
Q psy13453 88 PVS-----NGPLKVGGVLRRV------YS----------------SCLVPRGQKSLRTTVLFH-------------FLFQ 127 (764)
Q Consensus 88 ia~-----~~wlHVDa~l~~~------y~----------------s~ll~rd~~~l~~~~s~~-------------~d~~ 127 (764)
|++ ++++|||++...- +. -++.+.-.+.+.. +... ..+.
T Consensus 195 I~~ia~~~g~~l~vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~-~~~g~ll~~~~~~~~~~~~~~ 273 (462)
T d1c4ka2 195 VVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAG-FSQTSQIHKKDSHIKGQLRYC 273 (462)
T ss_dssp HHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSC-CTTCEEEEEECGGGTTSTTCC
T ss_pred HHHHHHHcCCEEEEechhhccccccCcCCcchhhccccccccCCccEEEEecCccccc-ccceEEEEeccccccccchhh
Confidence 886 8899999954211 00 0111100000000 0000 0000
Q ss_pred Cc--------ccCCCCccc--HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCcee-E-------
Q psy13453 128 HW--------QIPLGRRFR--ALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGL-V------- 189 (764)
Q Consensus 128 d~--------tle~SRr~~--ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~i-V------- 189 (764)
+. ..+-+-+.. ...+=++..++-.++..+++++.+++++++++.+++.+++.....+.... .
T Consensus 274 ~~~~~~~~~~~~~t~sp~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~ 353 (462)
T d1c4ka2 274 DHKHFNNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDT 353 (462)
T ss_dssp CHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCH
T ss_pred hHHHHHHhhhhcccCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccch
Confidence 00 011111111 11233344555677788889999999999999999987755433322110 0
Q ss_pred -------------------EEEeecccccccccc------cc----CccCCccHHH-HHHHHHHHhcCcEEEEeceeCCe
Q psy13453 190 -------------------CFRLKVRFWDKLDNL------FG----TISFGDNDLN-KAVYDRIIARKVIYIVKGSFQDR 239 (764)
Q Consensus 190 -------------------~Fry~P~~~~~~~~~------~~----~~~~~~d~~n-~~L~~~L~~~G~~~vs~t~l~g~ 239 (764)
+|.......-..+.. .+ ........++ ..+.+.|.+.|. .....+.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~~~~~~~L~~~gI----~~e~~~~ 429 (462)
T d1c4ka2 354 EDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGI----IPEKSDL 429 (462)
T ss_dssp HHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTC----CCSEECS
T ss_pred HhhhcccchhccCCcchhccccccCccceecccceeEEecCCccccccchhhcCCcHHHHHHHHHHcCC----eeeccCC
Confidence 000000000000000 00 0000000011 467777877785 2334456
Q ss_pred eEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHc
Q psy13453 240 LFMRFAICSSQTEESDVQLGWNEIRTATEEVLR 272 (764)
Q Consensus 240 ~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~ 272 (764)
..+|+ ++++.+|+++++.+++.|+++.+.+-+
T Consensus 430 ~~i~~-~~s~~~T~edid~li~aL~ei~r~~~~ 461 (462)
T d1c4ka2 430 NSILF-LMTPAETPAKMNNLITQLLQLQRLIEE 461 (462)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CeEEE-EecCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 67897 577888999999999999999877643
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=97.72 E-value=0.00045 Score=73.22 Aligned_cols=165 Identities=11% Similarity=-0.001 Sum_probs=106.6
Q ss_pred HHHHHHHHhhcccC-ccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHH--HHHHHHHHHHHHhh
Q psy13453 538 IVGDMLSGAFGLIG-FSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEA--TLVSILVAKRKMIN 614 (764)
Q Consensus 538 ~lad~l~~~lN~n~-~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeA--Nl~Al~aAR~~~~~ 614 (764)
.+-+.+....+... ..|.......++=+.+.+|+.+..+.... ...++|.+++.+ -+.++.........
T Consensus 50 ~V~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~--------~~~i~~~~~~~~~g~~~~~~~~~~~l~~ 121 (401)
T d7aata_ 50 CVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFK--------SGRYVTVQGISGTGSLRVGANFLQRFFK 121 (401)
T ss_dssp HHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH--------TTCEEEEEEEHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccCCcccC--------cCceEEeccchHHHHHHHHHHhhHhhcC
Confidence 34444444444333 24655556677878888888776554321 123444333222 22233322222211
Q ss_pred hhccCCCCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecC--CCCcccHHHHHHHHHHhhhcCCCceEEEEee
Q psy13453 615 HWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLIATL 692 (764)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d--~~g~md~~~Le~~I~~~~~~G~~p~~Vvata 692 (764)
+.-.|++.+=.-......+...|.+++.+|++ +.+..|.+.+.+.+... ...+.+++.+.
T Consensus 122 ---------------pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iii~~ 183 (401)
T d7aata_ 122 ---------------FSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKI---PEKSIILLHAC 183 (401)
T ss_dssp ---------------TCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTS---CTTCEEEEESS
T ss_pred ---------------CCceEEEecCCCcchhhHHHHcCCeEEEEeccccccccccHHHHHHHHhcC---CCceEEEEecC
Confidence 12245666555556666788899999999984 56788999988887643 22456888889
Q ss_pred ccCCcccc---ccHHHHHHHHHhcCCEEEEecccccccc
Q psy13453 693 GTTGTCAF---DNLEELGPICQEYNIWLHVDAAYAGSAL 728 (764)
Q Consensus 693 GTT~~Gai---Dpl~eIa~i~~~~glwLHVDaA~Gg~~l 728 (764)
.+|.||.+ +.+++|+++|++|++|++.|-+|.....
T Consensus 184 p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~ 222 (401)
T d7aata_ 184 AHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFAS 222 (401)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTT
T ss_pred CCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhc
Confidence 99999998 5778899999999999999999988543
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=97.66 E-value=0.00044 Score=73.11 Aligned_cols=152 Identities=16% Similarity=0.039 Sum_probs=100.0
Q ss_pred ccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCc
Q psy13453 552 FSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631 (764)
Q Consensus 552 ~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~ 631 (764)
..|.......++=+.+.+|+.+..+.... ......+.|.||+.+...++..... .. +.
T Consensus 63 ~~Y~p~~G~~~lR~aia~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~l~~--~~---------------~g 120 (396)
T d2q7wa1 63 KNYLGIDGIPEFGRCTQELLFGKGSALIN-----DKRARTAQTPGGTGALRVAADFLAK--NT---------------SV 120 (396)
T ss_dssp CCCCCTTCCHHHHHHHHHHHHCTTCHHHH-----TTCEEEEEESHHHHHHHHHHHHHHH--HS---------------CC
T ss_pred CCCCCCcCCHHHHHHHHHHHHhhcCCccc-----ccceeeeccchHHHHHHHHHHHHhh--cc---------------cc
Confidence 34666666677777778887765543211 0112344566666554333322111 11 12
Q ss_pred eEEEecCCcchhHHHHHHhCCCceEEEecC--CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccHHHH
Q psy13453 632 LVAYTSDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLEEL 706 (764)
Q Consensus 632 ~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d--~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~eI 706 (764)
..|++.+-.-....-.+...|.+++.+|.. +++..+...+++.+.+. .....+++.+..++.||.+ +.+++|
T Consensus 121 d~Vlvp~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~P~NPTG~~~s~e~~~~l 197 (396)
T d2q7wa1 121 KRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEA---QAGDVVLFHGCCHNPTGIDPTLEQWQTL 197 (396)
T ss_dssp CEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTC---CTTCEEEEECSSCTTTCCCCCHHHHHHH
T ss_pred eEEEEecCCCccchHHHHHcCCeeEecccccccccccccchHHHHHHHh---ccCcEEEEecCCcCCcCeecCHHHHHHH
Confidence 346666666666666778899999999975 45567777777765443 3346688888899999997 567788
Q ss_pred HHHHHhcCCEEEEecccccccc
Q psy13453 707 GPICQEYNIWLHVDAAYAGSAL 728 (764)
Q Consensus 707 a~i~~~~glwLHVDaA~Gg~~l 728 (764)
+++|++|++|+..|-+|.....
T Consensus 198 ~~la~~~~~~ii~De~Y~~l~~ 219 (396)
T d2q7wa1 198 AQLSVEKGWLPLFDFAYQGFAR 219 (396)
T ss_dssp HHHHHHHTCEEEEEESCTTSSS
T ss_pred HHHHhcCCeEEEEecccccccc
Confidence 8999999999999999987543
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=97.66 E-value=0.00018 Score=77.09 Aligned_cols=223 Identities=7% Similarity=-0.018 Sum_probs=132.7
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCc-ccccccCchhhhc-----CCC
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRT-LHQDIQSLNAPVS-----NGP 93 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT-~~G~iDpi~~ia~-----~~w 93 (764)
.|.|+..++...+-.. +.++ ..|.+++++.+++.++.+....+|.+=|.+ +.|.+-||.++.+ +.+
T Consensus 138 ~h~s~~~G~~~~~a~~---~~~~-----~~d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~L~~l~~L~~~~~a~ 209 (401)
T d1fc4a_ 138 NHASIIDGVRLCKAKR---YRYA-----NNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDAL 209 (401)
T ss_dssp CCHHHHHHHHTSCSEE---EEEC-----TTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEE
T ss_pred chHHHHccccccCceE---EEEc-----CCChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhhhhHHHHHHhhcCcE
Confidence 7999999998877654 5554 457888999888877766555665555554 4577888888665 888
Q ss_pred ceeccccccc-cc----e------------eeeecCCCcccc---cccc-c---cc---cCCcccCCCCcccHHHHHHHH
Q psy13453 94 LKVGGVLRRV-YS----S------------CLVPRGQKSLRT---TVLF-H---FL---FQHWQIPLGRRFRALKLWMTL 146 (764)
Q Consensus 94 lHVDa~l~~~-y~----s------------~ll~rd~~~l~~---~~s~-~---~d---~~d~tle~SRr~~ALklWatL 146 (764)
+++|..+.-. ++ + ++...-.+.+-. .+-. . .+ ....+.-+|-+.....+.+++
T Consensus 210 LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg~~Gg~v~g~~~~~~~l~~~~~~~~~s~~l~p~~~~aa~ 289 (401)
T d1fc4a_ 210 VMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASI 289 (401)
T ss_dssp EEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSCEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHH
T ss_pred EEehhhhccccccCCCCccchhccCCCCCeEEEeecccccccCCcccccCCHHHHHHHHcCChhhhhcCCCCHHHHHHHH
Confidence 9999965211 10 0 111111111110 0000 0 01 011112223333333333333
Q ss_pred HHc-cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHh
Q psy13453 147 RSY-GLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIA 225 (764)
Q Consensus 147 ~~l-G~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~ 225 (764)
..+ -.....++.++..+..++|.+.+.+. ++.+. ..+.+||.+... .++...++.++|.+
T Consensus 290 ~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~-g~~~~-~~~~pIv~v~~~-----------------~~~~a~~~~~~L~~ 350 (401)
T d1fc4a_ 290 KVLEMVEAGSELRDRLWANARQFREQMSAA-GFTLA-GADHAIIPVMLG-----------------DAVVAQKFARELQK 350 (401)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHHT-TCCBC-CSSSSEEEEEEE-----------------CHHHHHHHHHHHHH
T ss_pred hhhcccccCHHHHHHHHHHHHHHHhhhccc-CCccC-CCCCCEEEEEEC-----------------CHHHHHHHHHHHHH
Confidence 322 12334667788889999999999985 55543 345677665431 23345789999999
Q ss_pred cCcEEE--Ee-ceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 226 RKVIYI--VK-GSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 226 ~G~~~v--s~-t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
+|.+.. .+ +.-.+...||+++. ...|++||+.+++.+.++.+++
T Consensus 351 ~Gi~v~~i~~PtVp~g~~~lRi~~~-a~hT~edId~~v~al~ev~~~l 397 (401)
T d1fc4a_ 351 EGIYVTGFFYPVVPKGQARIRTQMS-AAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp TTEECCEECTTSSCTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCceEEeECCCCCCCCCceEEEEEC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 998532 22 22345667999765 4456899999999999998764
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=97.66 E-value=0.00058 Score=72.57 Aligned_cols=154 Identities=11% Similarity=0.059 Sum_probs=102.5
Q ss_pred ccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceE
Q psy13453 554 WLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633 (764)
Q Consensus 554 ~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~v 633 (764)
|.......++-+.+.+|+.+--+.+-. .+....+.|+|++.++..+..+..... ... ..+...
T Consensus 70 Y~p~~G~p~lreaia~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~-----------~~pGd~ 132 (412)
T d1ajsa_ 70 YLPILGLAEFRTCASRLALGDDSPALQ-----EKRVGGVQSLGGTGALRIGAEFLARWY-NGT-----------NNKDTP 132 (412)
T ss_dssp CCCTTCCHHHHHHHHHHHHCTTCHHHH-----TTCEEEEEEEHHHHHHHHHHHHHHHHS-SSS-----------SCCCSC
T ss_pred CCCCCCCHHHHHHHHHHHhccCCcccc-----cccceeecccchhhHHHHHHHHHHHHh-hhc-----------CCCCCE
Confidence 444455667777777777665443221 012346678888888766665443322 110 112334
Q ss_pred EEecCCcchhHHHHHHhCCCceEEEec---CCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccHHHHH
Q psy13453 634 AYTSDQSNSSVEKSAIIGDVPVRQLRS---DDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLEELG 707 (764)
Q Consensus 634 i~~S~~aH~Sv~kAa~~lGl~v~~Vp~---d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~eIa 707 (764)
|++.+=.-......+...|...+.++. +..+..|.+++++.+.... ....+++.+..+|.||.+ +.+++|+
T Consensus 133 Vlv~~P~y~~y~~~~~~~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~il~~~P~NPTG~v~s~e~~~~i~ 209 (412)
T d1ajsa_ 133 VYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAP---EFSIFVLHACAHNPTGTDPTPEQWKQIA 209 (412)
T ss_dssp EEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSC---TTCEEEEESSSCTTTCCCCCHHHHHHHH
T ss_pred EEEeCCcchhhHHHHHHcCCeEEEeecccccccccccHHHHHHHHHhcc---CCcEEEEecCCCCCcCCCCCHHHHHHHH
Confidence 666666666777778889987555443 2445789988887776532 235677888899999998 5688899
Q ss_pred HHHHhcCCEEEEeccccccc
Q psy13453 708 PICQEYNIWLHVDAAYAGSA 727 (764)
Q Consensus 708 ~i~~~~glwLHVDaA~Gg~~ 727 (764)
++|++||+|+..|-+|....
T Consensus 210 ~la~~~~~~ii~De~Y~~l~ 229 (412)
T d1ajsa_ 210 SVMKRRFLFPFFDSAYQGFA 229 (412)
T ss_dssp HHHHHHTCEEEEEESCTTTT
T ss_pred HHHhhCCEEEEecHhhhhhh
Confidence 99999999999999998754
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=97.63 E-value=0.00014 Score=79.45 Aligned_cols=215 Identities=10% Similarity=0.001 Sum_probs=128.4
Q ss_pred HHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccCchhhhc-----CCCceeccc
Q psy13453 26 KATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQSLNAPVS-----NGPLKVGGV 99 (764)
Q Consensus 26 KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDpi~~ia~-----~~wlHVDa~ 99 (764)
......+... +.++.++.+..|.+.++..++.+ ... +.+-++|.-+..+.+.++++ +.-+.+|+.
T Consensus 170 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~------~a~v~v~~p~~~g~~e~~~~~~~~~~h~~g~~~~~~~~ 240 (471)
T d1wyub1 170 ATASMAGYQV---REIPSGPEGEVDLEALKRELGPH------VAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGA 240 (471)
T ss_dssp HHHHHTTCEE---EEECBCTTSSBCHHHHHHHCSTT------EEEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEGG
T ss_pred eeeeccccee---ecccccccccccchhhhhhhhcc------ccceeeccCCCcccccchhhhhHHHHHhcccccccccc
Confidence 3444445444 88898899999999999877654 234 46666666555566766554 444556551
Q ss_pred --------------------------ccc------ccceeeeecCCCcccccccccc-----------ccCCccc----C
Q psy13453 100 --------------------------LRR------VYSSCLVPRGQKSLRTTVLFHF-----------LFQHWQI----P 132 (764)
Q Consensus 100 --------------------------l~~------~y~s~ll~rd~~~l~~~~s~~~-----------d~~d~tl----e 132 (764)
+.. +|.+++-.+++ +..++-... ..+.-.| .
T Consensus 241 ~~~~~~~l~~p~~~g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~--~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~a 318 (471)
T d1wyub1 241 NLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAH--LAPYLPVPLVERGEEGFYLDFDRPKSIGRVRS 318 (471)
T ss_dssp GGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGG--GGGGCCSCEEEECSSCEEEECCCTTCCCCSSS
T ss_pred chhhhhhccccCcccccccccccccccccccccccccccceeehhh--hhccCCCceecCCCccccccCCCcccccchhh
Confidence 111 12223333322 111111100 0011111 1
Q ss_pred CCC-cccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCC-CCceeEEEEeeccccccccccccCccC
Q psy13453 133 LGR-RFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCP-PSMGLVCFRLKVRFWDKLDNLFGTISF 210 (764)
Q Consensus 133 ~SR-r~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~-P~l~iV~Fry~P~~~~~~~~~~~~~~~ 210 (764)
||= ..-|+..|..|.++|.+|++++.+.++..|+|++++|+. +++++..+ |-++-.+.+.. .
T Consensus 319 ctnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~-~G~~~~~~~~ff~EFvv~~~---------------~ 382 (471)
T d1wyub1 319 FYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKE-KGYRVPYDGPSMHEFVAQPP---------------E 382 (471)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCBCSSCSSCCSCEEEBCS---------------T
T ss_pred hhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhh-cCceeccCcceeeEEeecCC---------------C
Confidence 322 344567788899999999999999999999999999976 89998643 33343333221 1
Q ss_pred CccHHHHHHHHHHHhcCcEEEEe-ceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 211 GDNDLNKAVYDRIIARKVIYIVK-GSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 211 ~~d~~n~~L~~~L~~~G~~~vs~-t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
+.+ ...+.++|.+.|..-.+. ...-+...+-+|++--+ |+++||.|++.++++.+++
T Consensus 383 ~~~--~~~i~k~L~~~G~~~~~~~~p~~~~~~llv~vTE~~-tkedID~lv~aL~~i~~e~ 440 (471)
T d1wyub1 383 GFR--ALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETE-AKETLEAFAEAMGALLKKP 440 (471)
T ss_dssp TCC--HHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTS-CHHHHHHHHHHHHHHHTSC
T ss_pred CCC--HHHHHHHHHHcCCCCCcccCcCCCCCeEEEecCCCC-CHHHHHHHHHHHHHHHHhh
Confidence 111 134667777788732211 11113456778888777 5889999999999987654
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.63 E-value=0.0003 Score=74.75 Aligned_cols=150 Identities=13% Similarity=0.128 Sum_probs=107.2
Q ss_pred cCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEE
Q psy13453 555 LSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVA 634 (764)
Q Consensus 555 ~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi 634 (764)
...|-...+|+ .|+.|-|.. +++.+++|..|+ .++.. .. .+...|
T Consensus 46 ~~nPt~~~le~----~la~LE~~~-----------~a~~fsSGMaAi-sall~----ll---------------~~Gd~v 90 (380)
T d1ibja_ 46 SGNPTRDALES----LLAKLDKAD-----------RAFCFTSGMAAL-SAVTH----LI---------------KNGEEI 90 (380)
T ss_dssp TCCHHHHHHHH----HHHHHHTCS-----------EEEEESSHHHHH-HHHHT----TS---------------CTTCEE
T ss_pred CCChHHHHHHH----HHHHHcCCc-----------eEEehhhHHHHH-HHHHH----hh---------------CCCCEE
Confidence 35677777776 456665542 356778786664 44431 11 123357
Q ss_pred EecCCcchhHHHHHHh----CCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHH
Q psy13453 635 YTSDQSNSSVEKSAII----GDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPIC 710 (764)
Q Consensus 635 ~~S~~aH~Sv~kAa~~----lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~ 710 (764)
+++...+....+-... +|+.+..+..+ |+++++++|++. +-+|.+=..++.+..+-||++|+++|
T Consensus 91 v~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~-----~~~~~~~ai~~~------t~li~~EtpsNP~l~v~Di~~i~~iA 159 (380)
T d1ibja_ 91 VAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT-----KLDEVAAAIGPQ------TKLVWLESPTNPRQQISDIRKISEMA 159 (380)
T ss_dssp EEESSCCHHHHHHHHHTSGGGTCEEEEECTT-----SHHHHHHHCCSS------EEEEEECSSCTTTCCCCCHHHHHHHH
T ss_pred EEEecccccccchhhhhhccccccccccCcc-----hHHHHHHHhccC------ccEEEeccccccccccccHHHHHHHH
Confidence 7888888776666543 57777766543 478888887554 34888889999999999999999999
Q ss_pred HhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 711 QEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 711 ~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
+++|+++.||-+|+.....-|- . - .||-+.-|.-|+++.-
T Consensus 160 ~~~g~~~vVDnT~atP~~~~Pl-~---~---GaDiVvhS~TKyi~Gh 199 (380)
T d1ibja_ 160 HAQGALVLVDNSIMSPVLSRPL-E---L---GADIVMHSATKFIAGH 199 (380)
T ss_dssp HTTTCEEEEECTTTCTTTCCGG-G---T---TCSEEEEETTTTTTCS
T ss_pred HHcCCeEEeecccccccccccc-c---c---CCCEEEecccceeccc
Confidence 9999999999999886655442 1 1 3699999999998753
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=97.60 E-value=0.00066 Score=70.04 Aligned_cols=180 Identities=11% Similarity=0.005 Sum_probs=108.3
Q ss_pred EEEEeeCCcccccccCchhhhc-----CCCceecccc--------------------ccc-----cc-eeeeecCCCccc
Q psy13453 69 MCSGYCGRTLHQDIQSLNAPVS-----NGPLKVGGVL--------------------RRV-----YS-SCLVPRGQKSLR 117 (764)
Q Consensus 69 ~~VatAGTT~~G~iDpi~~ia~-----~~wlHVDa~l--------------------~~~-----y~-s~ll~rd~~~l~ 117 (764)
++..+..+|.+|.+-|++++++ ++.++|||.. .++ .+ +++.++++....
T Consensus 130 ~v~~~~~~~~tG~~~~i~~i~~~~~~~g~~~~vDa~qs~G~~~~d~~~~~~D~~~~s~~K~l~gp~G~g~l~~~~~~~~~ 209 (361)
T d1m32a_ 130 HIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAA 209 (361)
T ss_dssp EEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTT
T ss_pred ceEEEeeecccccchhhhhhhhhhcccceeeEeecccccCcccccccccccceEEeeecccccCCCCceEEEechhhhhh
Confidence 3358888999999999999986 8899999932 122 12 344444321110
Q ss_pred cc---c--cccc-------cc-CCcccCCCCcccHHHHHHHHHHccHHHHHH-HHHHHHHHHHHHHHHHhcCCCeEEeCC
Q psy13453 118 TT---V--LFHF-------LF-QHWQIPLGRRFRALKLWMTLRSYGLKGLQA-YLRKHISLAKKFADLVEQDDRFELVCP 183 (764)
Q Consensus 118 ~~---~--s~~~-------d~-~d~tle~SRr~~ALklWatL~~lG~eGy~~-~i~~~i~lA~~l~~~I~~~p~~ell~~ 183 (764)
.. . .... .. ........-....+.+..+++.+-.+|+.+ ..++..+.++.+.+.+++. ++.+..+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~ 288 (361)
T d1m32a_ 210 CKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL-GFNTLLD 288 (361)
T ss_dssp CTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSC
T ss_pred hccccccccccchhhhccccccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhc-CCcccCC
Confidence 00 0 0000 00 111111222333446666777776776554 4467777888999998875 5666666
Q ss_pred CC---ceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHH
Q psy13453 184 PS---MGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGW 260 (764)
Q Consensus 184 P~---l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l 260 (764)
+. -.+++|.. |.+ ...-..++.+.|.++|....+.. ......+|++ +.+.++++||+.++
T Consensus 289 ~~~rs~~v~~~~~-p~~--------------~~~~~~~~~~~l~~~gi~i~~G~-~~~~~~~Ris-~~g~~~~~di~~lv 351 (361)
T d1m32a_ 289 DELHSPIITAFYS-PED--------------PQYRFSEFYRRLKEQGFVIYPGK-VSQSDCFRIG-NIGEVYAADITALL 351 (361)
T ss_dssp GGGBCSSEEEEEC-CCC--------------TTCCHHHHHHHHHHTTEECEECC-CSSSCEEEEE-CCSSCCHHHHHHHH
T ss_pred hhhcCCcEEEEEC-CCC--------------CCCCHHHHHHHHHHCCcEEECCC-cCCCCEEEEe-CCCCCCHHHHHHHH
Confidence 53 34677854 221 11113578889999997654433 3334579997 44467899999999
Q ss_pred HHHHHH
Q psy13453 261 NEIRTA 266 (764)
Q Consensus 261 ~~l~~~ 266 (764)
+.|+++
T Consensus 352 ~al~~~ 357 (361)
T d1m32a_ 352 TAIRTA 357 (361)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999876
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=97.60 E-value=0.00032 Score=73.34 Aligned_cols=223 Identities=13% Similarity=0.035 Sum_probs=132.2
Q ss_pred eeeHH--HHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCC
Q psy13453 21 IYESF--KATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGP 93 (764)
Q Consensus 21 ~YSv~--KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~w 93 (764)
|||.. +.+..+|... +.++.+.....+....+.++.... +-++..+.-+|.+|.+-|+++++. +..
T Consensus 102 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~t~tG~~~~~~~i~~~~~~~~~~ 174 (388)
T d2ch1a1 102 IWAERAVEMSERYGADV---RTIEGPPDRPFSLETLARAIELHQ----PKCLFLTHGDSSSGLLQPLEGVGQICHQHDCL 174 (388)
T ss_dssp HHHHHHHHHHHHTTCEE---EEEECCTTSCCCHHHHHHHHHHHC----CSEEEEESEETTTTEECCCTTHHHHHHHTTCE
T ss_pred cccccchhhhhhhcccc---cccccccccccchhhhhhhhccCC----cceeeeeecccccccccchhhhcchhccccce
Confidence 45543 4445555544 777887777888888888876541 223357788999999999999876 778
Q ss_pred ceecccc--------------------ccc-----cc-eeeeecCCCcccc-------ccccccc------cCCcccC--
Q psy13453 94 LKVGGVL--------------------RRV-----YS-SCLVPRGQKSLRT-------TVLFHFL------FQHWQIP-- 132 (764)
Q Consensus 94 lHVDa~l--------------------~~~-----y~-s~ll~rd~~~l~~-------~~s~~~d------~~d~tle-- 132 (764)
++||+.- .++ .+ +++..+. ..+.. ..+...+ +.....+
T Consensus 175 ~~vD~~ss~g~~pid~~~~~~d~~~~s~~K~~~gp~G~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (388)
T d2ch1a1 175 LIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISP-KALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPK 253 (388)
T ss_dssp EEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSSCEEEEECH-HHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCC
T ss_pred eeeeeeecccccccchhccCceEEEEccccccCCCCeEEEEeccH-HHHHhhhcccCccccccccchhhhhhhccccccc
Confidence 8999931 011 11 2333322 11110 0000011 1111111
Q ss_pred ---CCCccc-HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC---ceeEEEEeeccccccccccc
Q psy13453 133 ---LGRRFR-ALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS---MGLVCFRLKVRFWDKLDNLF 205 (764)
Q Consensus 133 ---~SRr~~-ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~---l~iV~Fry~P~~~~~~~~~~ 205 (764)
.+=... ...++..++.++.+|..+..++......+....+.......++.+|. -.++||++..
T Consensus 254 ~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~~~~p~---------- 323 (388)
T d2ch1a1 254 RYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPK---------- 323 (388)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCT----------
T ss_pred ccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhcccccccCCHHHhCCeEEEEECCC----------
Confidence 111112 23557777888888998888888888888888887754444444443 3478898741
Q ss_pred cCccCCccHHHHHHHHHHHhc-CcEEEE-eceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 206 GTISFGDNDLNKAVYDRIIAR-KVIYIV-KGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 206 ~~~~~~~d~~n~~L~~~L~~~-G~~~vs-~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
+.+. .++.+.|.++ |..+-. ...+.+ ..+|++.+...+++|+|+.+++.|+++.+.
T Consensus 324 -----g~~~--~~l~~~l~~~~gI~v~~G~~~~~~-~~~RIs~~g~~~t~edI~~ll~alke~L~~ 381 (388)
T d2ch1a1 324 -----GVDW--WKVSQYAMNNFSLEVQGGLGPTFG-KAWRVGIMGECSTVQKIQFYLYGFKESLKA 381 (388)
T ss_dssp -----TCCH--HHHHHHHHHHHCBCCBCCCGGGTT-TEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred -----CCCH--HHHHHHHhhcCCEEEeCCCccccC-CEEEEcCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 1111 2556666554 552211 112233 379998666777899999999999988765
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=97.57 E-value=0.0005 Score=71.35 Aligned_cols=205 Identities=15% Similarity=0.066 Sum_probs=117.8
Q ss_pred EEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCceeccccc------------
Q psy13453 39 RLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKVGGVLR------------ 101 (764)
Q Consensus 39 ~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHVDa~l~------------ 101 (764)
..+....+...+....+....+. .+.++.-+.-+|.+|++.|++++++ +..+|||+...
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~tg~~~~i~~i~~~~~~~g~~~~vDa~~~~g~~~~~~~~~~ 195 (377)
T d1vjoa_ 120 RTISKPWGEVFSLEELRTALETH----RPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWG 195 (377)
T ss_dssp EEEECCTTCCCCHHHHHHHHHHH----CCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTT
T ss_pred cccccCCCCcccchhhhhhhhcC----cceeeeeeeeeccceeeechhhhhhhhhhccceEEEecchhhhhhhhcccccc
Confidence 55555555556666666555543 1223346667789999999999887 77889999431
Q ss_pred --------cc-----cc-eeeeecCCCccccc-------ccccc--------ccCCcccCCCCcccHH-HHHHHHHHccH
Q psy13453 102 --------RV-----YS-SCLVPRGQKSLRTT-------VLFHF--------LFQHWQIPLGRRFRAL-KLWMTLRSYGL 151 (764)
Q Consensus 102 --------~~-----y~-s~ll~rd~~~l~~~-------~s~~~--------d~~d~tle~SRr~~AL-klWatL~~lG~ 151 (764)
++ .+ ++++.+. ..+... ++... .....+....-....+ .+=..+.....
T Consensus 196 ~d~~~~s~~K~~~gp~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 274 (377)
T d1vjoa_ 196 VDLAYSCSQKGLGCSPGASPFTMSS-RAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQ 274 (377)
T ss_dssp CSEEECCSSSTTCSCSSCEEEEECH-HHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHH
T ss_pred cceeeecccccccCCCEEEEecchh-hHHhhhhccCCCCcceeeccchhhhccCcccccccccceechhhhHHHHhhhhh
Confidence 11 01 2222222 111100 00000 0111111111122121 23344555677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC---ceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhc-C
Q psy13453 152 KGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS---MGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIAR-K 227 (764)
Q Consensus 152 eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~---l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~-G 227 (764)
+|...+.++.-+.++++.+.+.+. ++.++.++. ..+++|... ++ .+ ..++.+.|.++ |
T Consensus 275 ~g~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~rs~~v~~~~~p-~~--------------~~--~~~l~~~L~~~~g 336 (377)
T d1vjoa_ 275 EGLANCWQRHQKNVEYLWERLEDI-GLSLHVEKEYRLPTLTTVCIP-DG--------------VD--GKAVARRLLNEHN 336 (377)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECC-TT--------------CC--HHHHHHHHHHHHC
T ss_pred cCchHHHHHHHHHhhhhhhhhhcc-CceeecChHhcCCeEEEEECC-CC--------------CC--HHHHHHHHHhcCC
Confidence 788888888889999999999874 667666554 357788652 21 11 24677777544 6
Q ss_pred cEEEEe-ceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13453 228 VIYIVK-GSFQDRLFMRFAICSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 228 ~~~vs~-t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~ 267 (764)
..+... ..+. ..++|+..+...+++++|+++++.|+++.
T Consensus 337 I~v~~G~~~~~-~~~~Ris~~g~~~t~edi~~lv~al~~~l 376 (377)
T d1vjoa_ 337 IEVGGGLGELA-GKVWRVGLMGFNSRKESVDQLIPALEQVL 376 (377)
T ss_dssp EECEECCGGGT-TTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred EEEecCccccc-CCEEEEecCcCCCCHHHHHHHHHHHHHHh
Confidence 543222 2222 35799976667789999999999998763
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=97.46 E-value=0.0022 Score=68.09 Aligned_cols=93 Identities=13% Similarity=0.027 Sum_probs=74.3
Q ss_pred EEEecCCcchhHHHHHHhCCCceEEEecC--CCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccHHHHH
Q psy13453 633 VAYTSDQSNSSVEKSAIIGDVPVRQLRSD--DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLEELG 707 (764)
Q Consensus 633 vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d--~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~eIa 707 (764)
.|++++-.-......+...|..++.+|.. ..+..+.+.+++.+.... ..+.+++.+..+|.||.+ +.+++|+
T Consensus 126 ~Vlip~P~~~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~i~~P~NPTG~~~s~~~~~~i~ 202 (412)
T d1yaaa_ 126 LVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAP---EGSIFVLHSCAHNPTGLDPTSEQWVQIV 202 (412)
T ss_dssp CEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSC---TTCEEEEECSSCTTTCCCCCHHHHHHHH
T ss_pred EEecccccCchhHHHHHHcCCceecccccccccccccchhhhcccccCC---CceEEEEecCCCCCccccCCHHHHHHHH
Confidence 35666656666666778899999999974 567889999888887543 346788889999999998 4688899
Q ss_pred HHHHhcCCEEEEecccccccc
Q psy13453 708 PICQEYNIWLHVDAAYAGSAL 728 (764)
Q Consensus 708 ~i~~~~glwLHVDaA~Gg~~l 728 (764)
++|+++++|+..|-+|.....
T Consensus 203 ~~a~~~~~~ii~De~Y~~l~~ 223 (412)
T d1yaaa_ 203 DAIASKNHIALFDTAYQGFAT 223 (412)
T ss_dssp HHHHHTTCEEEEEESCTTTSS
T ss_pred hhhccCCEEEeecceeeeccc
Confidence 999999999999999987543
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=97.46 E-value=0.0014 Score=67.54 Aligned_cols=174 Identities=11% Similarity=-0.058 Sum_probs=104.2
Q ss_pred HHHHHhhcccCccccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCC
Q psy13453 541 DMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKN 620 (764)
Q Consensus 541 d~l~~~lN~n~~~~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~ 620 (764)
+.+...++.....+...+...++.+.+.+|+..- ++++ ...++|+|+++++.+.+.+ .
T Consensus 39 ~~~~~~~~~~~~~~yp~~g~~~Lr~aia~~~~~~-~v~~---------d~I~it~G~~~~l~~l~~~-----~------- 96 (334)
T d2f8ja1 39 DEVFRRLNSDALRIYYDSPDEELIEKILSYLDTD-FLSK---------NNVSVGNGADEIIYVMMLM-----F------- 96 (334)
T ss_dssp HHHHHHCCTTGGGSCCCSSCHHHHHHHHHHHTCS-SCCG---------GGEEEEEHHHHHHHHHHHH-----S-------
T ss_pred HHHHHHhhcchhcCCCCCCcHHHHHHHHHHhccc-CCCc---------ceEEecCcchhHHHHHhhh-----c-------
Confidence 3344444443333333334445555555555321 3433 3578889888876543321 0
Q ss_pred CCCccccccCceEEEecCCcchhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc
Q psy13453 621 PSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF 700 (764)
Q Consensus 621 ~~~~~~~~~~~~vi~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai 700 (764)
+ .|++.+-+......++..+|++++.||+++++..+-. .-..+-+++.+..++.+|.+
T Consensus 97 ----------d-~v~i~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~~-----------~~~~~~~l~l~nP~NPtG~~ 154 (334)
T d2f8ja1 97 ----------D-RSVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLRIPEV-----------NVGEGDVVFIPNPNNPTGHV 154 (334)
T ss_dssp ----------S-EEEECSSCCHHHHHHHHHHTCCEEECCCCTTSCCCCC-----------CCCTTEEEEEESSCTTTCCC
T ss_pred ----------c-ccccccccccccccchhccCCcccccccccccccccc-----------ccccceEEEeccccccccee
Confidence 1 2445556777788888999999999999987765411 11123466677789999999
Q ss_pred ccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC-cCcee
Q psy13453 701 DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN-FDCSA 762 (764)
Q Consensus 701 Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P-~~~g~ 762 (764)
-+.++|.+++ ++++++++|-+|............ ..-+ ---+..++.|.++.| .-+|.
T Consensus 155 ~s~~~l~~~~-~~~~~ii~Dd~~~~~~~~~~~~~~--~~~~-~~i~~~S~SK~~~~~G~R~G~ 213 (334)
T d2f8ja1 155 FEREEIERIL-KTGAFVALDEAYYEFHGESYVDFL--KKYE-NLAVIRTFSKAFSLAAQRVGY 213 (334)
T ss_dssp CCHHHHHHHH-TTTCEEEEECTTGGGTCCCCGGGG--GTCS-SEEEEEESTTTSSCTTTCEEE
T ss_pred ecHHHhhccc-cceeEEeecccchhhccccccccc--ccCc-eEEEEecCccccchhhhhhhh
Confidence 9988888765 578999999887553322211111 1111 124567899987766 34544
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=97.45 E-value=0.002 Score=68.55 Aligned_cols=151 Identities=14% Similarity=0.082 Sum_probs=103.5
Q ss_pred cCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEE
Q psy13453 555 LSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVA 634 (764)
Q Consensus 555 ~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi 634 (764)
...|-...+|+ .+++|-|.. +.+.+++|..|+..++.+. . .++..|
T Consensus 64 ~~nPt~~~LE~----~la~LEgg~-----------~a~~~sSGMaAi~~~l~~l----~---------------~~Gd~i 109 (398)
T d1qgna_ 64 YGNPTTVVLEE----KISALEGAE-----------STLLMASGMCASTVMLLAL----V---------------PAGGHI 109 (398)
T ss_dssp GCCHHHHHHHH----HHHHHHTCS-----------EEEEESCHHHHHHHHHHHH----S---------------CSSCEE
T ss_pred CCChHHHHHHH----HHHHHhCCc-----------eEEEecCcchHHHHHHhhc----c---------------cccccc
Confidence 45787788887 556665542 3578888887776665432 1 112356
Q ss_pred EecCCcchhHHHHH----HhCCCceEEEecCCCCcccHHHHHHH-HHHhhhcCCCceEEEEeeccCCccccccHHHHHHH
Q psy13453 635 YTSDQSNSSVEKSA----IIGDVPVRQLRSDDNGVLRGDALLTA-VKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPI 709 (764)
Q Consensus 635 ~~S~~aH~Sv~kAa----~~lGl~v~~Vp~d~~g~md~~~Le~~-I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i 709 (764)
+++........+-. ..+|+.+..+... +.++.++. +.+. +-+|.+=..++.+.-+-||++|+++
T Consensus 110 v~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~~-----~~~~~~~~~~~~~------t~~v~~EspsNP~l~v~Di~~ia~i 178 (398)
T d1qgna_ 110 VTTTDCYRKTRIFIETILPKMGITATVIDPA-----DVGALELALNQKK------VNLFFTESPTNPFLRCVDIELVSKL 178 (398)
T ss_dssp EEETTSCHHHHHHHHHTGGGGTCEEEEECSS-----CHHHHHHHHHHSC------EEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred cccccccchhhhhhccccccccccccccccc-----chhhhhhhhcccc------ceEEEccCccccccccchHHHHHHH
Confidence 77776665544443 3367777766532 24444443 3333 3488888899999999999999999
Q ss_pred HHhcCCEEEEeccccccccccchhhhhhcCCC-cccEEEEcCCccCCCCc
Q psy13453 710 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLE-YVDSFDFNTHKWLLVNF 758 (764)
Q Consensus 710 ~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie-~aDSit~d~HK~l~~P~ 758 (764)
|+++|+.+.||..|+...+.-| ++ .||-+.-|.-|+++..-
T Consensus 179 a~~~g~~~vVDnT~atP~~~~P--------l~~GaDiVihS~TKy~~Ghs 220 (398)
T d1qgna_ 179 CHEKGALVCIDGTFATPLNQKA--------LALGADLVLHSATKFLGGHN 220 (398)
T ss_dssp HHHTTCEEEEECTTTCTTTCCT--------TTTTCSEEEECTTTTTTCSS
T ss_pred HhhcCCEEEecceeeccccCCc--------hhhCCCEEEEechhhcCccc
Confidence 9999999999999987654443 22 27999999999988653
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=97.45 E-value=0.0017 Score=68.83 Aligned_cols=151 Identities=17% Similarity=0.129 Sum_probs=107.8
Q ss_pred cCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEE
Q psy13453 555 LSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVA 634 (764)
Q Consensus 555 ~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi 634 (764)
...|-...+|+ .|++|-|.. ..+.+++|..|+..++.+. . .+...|
T Consensus 47 ~~nPt~~~le~----~la~LEgg~-----------~a~~~sSGMaAi~~~l~~l----~---------------~~gd~v 92 (384)
T d1cs1a_ 47 RGNPTRDVVQR----ALAELEGGA-----------GAVLTNTGMSAIHLVTTVF----L---------------KPGDLL 92 (384)
T ss_dssp TCCHHHHHHHH----HHHHHHTCS-----------EEEEESSHHHHHHHHHHHH----C---------------CTTCEE
T ss_pred CCCHHHHHHHH----HHHHHhCCC-----------ceEEecChHHHHHHHHhhc----c---------------ccccee
Confidence 45677888887 556665543 3578888877766665432 1 112357
Q ss_pred EecCCcchhHHHH----HHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHH
Q psy13453 635 YTSDQSNSSVEKS----AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPIC 710 (764)
Q Consensus 635 ~~S~~aH~Sv~kA----a~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~ 710 (764)
+++........+- +...|+.+..+.. .|.+++++++.++.+ +|.+=..++.+.-+-||++|+++|
T Consensus 93 v~~~~~yg~t~~~~~~~~~~~g~~~~~~d~-----~d~~~~~~~~~~~t~------~v~~EspsNP~l~v~Di~~i~~ia 161 (384)
T d1cs1a_ 93 VAPHDCYGGSYRLFDSLAKRGCYRVLFVDQ-----GDEQALRAALAEKPK------LVLVESPSNPLLRVVDIAKICHLA 161 (384)
T ss_dssp EEETTCCHHHHHHHHHHHTTTSCEEEEECT-----TCHHHHHHHHHTCCS------EEEEECSCTTTCCCCCHHHHHHHH
T ss_pred cccccccchhhhhhhhhhcccccccccccC-----CCHHHHHhhcccccc------EEEEeccccccceeccHHHHhhhh
Confidence 7777666554333 3335666666543 368889998887654 888888999999999999999999
Q ss_pred HhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 711 QEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 711 ~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
+++|+.+.||-.|+...+.-| .. -| ||-+.-|.-|+++.-
T Consensus 162 ~~~g~~~vVDNT~atP~~~~P-l~---~G---aDiVvhS~TKyi~Gh 201 (384)
T d1cs1a_ 162 REVGAVSVVDNTFLSPALQNP-LA---LG---ADLVLHSCTKYLNGH 201 (384)
T ss_dssp HHTTCEEEEECTTTCTTTCCG-GG---GT---CSEEEEETTTTTTCS
T ss_pred hhcCcEEEEeccccCcccccc-cc---cC---CCEEEEccccccccC
Confidence 999999999999988655444 12 23 699999999998753
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.41 E-value=0.0003 Score=73.65 Aligned_cols=221 Identities=11% Similarity=0.020 Sum_probs=134.7
Q ss_pred eeeH--HHHHhhcCCCCCCeEEecC-CCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-------
Q psy13453 21 IYES--FKATHSLSGTPDQVRLSGL-PDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS------- 90 (764)
Q Consensus 21 ~YSv--~KAa~~LGl~~~~v~~Vpv-d~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~------- 90 (764)
+||. ...+...|... ..+.. +.....+.+.+++++.+.+ .-++.-+.-.+.+|+.-|+++++.
T Consensus 94 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~tg~~~~~~~~~~~~~~~~~ 166 (382)
T d2bkwa1 94 TFSDRFADCLRSYGAQV---DVVRPLKIGESVPLELITEKLSQNS----YGAVTVTHVDTSTAVLSDLKAISQAIKQTSP 166 (382)
T ss_dssp HHHHHHHHHHHHTTCEE---EEECCSSTTSCCCHHHHHHHHHHSC----CSEEEEESEETTTTEECCHHHHHHHHHHHCT
T ss_pred hhhhhhhhhcccccccc---ccccccCCCCccchhHHHHHhhhcc----chheeeeeccccccccccchhhhhhcccccc
Confidence 4553 33444555554 44544 4455788899998887642 224457888899999999999765
Q ss_pred CCCceecccc--------------------ccc-c----c-eeeeecCCCcccccc--ccc---cc-cCC----------
Q psy13453 91 NGPLKVGGVL--------------------RRV-Y----S-SCLVPRGQKSLRTTV--LFH---FL-FQH---------- 128 (764)
Q Consensus 91 ~~wlHVDa~l--------------------~~~-y----~-s~ll~rd~~~l~~~~--s~~---~d-~~d---------- 128 (764)
++.+||||.- .|+ + + ++++++++. +...- ... .. +.+
T Consensus 167 ~~~~~vDa~qs~g~~pid~~~~giD~~~~s~~K~l~gP~G~g~l~vs~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (382)
T d2bkwa1 167 ETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRF-MDYALNDSKNGHVHGYFSSLRRWTPIMEN 245 (382)
T ss_dssp TSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHH-HHHHTCHHHHCCCSCSTTCHHHHHHHHHH
T ss_pred ceeeeeecccccccccccccccCeeEEeecccccCcCCCchhhhhccHHH-HhhhhhcccCCCcccchhhhhhhhhhhhc
Confidence 5788999941 122 1 1 344444321 10000 000 00 000
Q ss_pred -ccc----CCCCcccH-HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCC-----CCceeEEEEeeccc
Q psy13453 129 -WQI----PLGRRFRA-LKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCP-----PSMGLVCFRLKVRF 197 (764)
Q Consensus 129 -~tl----e~SRr~~A-LklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~-----P~l~iV~Fry~P~~ 197 (764)
... .++-.... ..+-.+|+.+-.+|..++.++.-++++++.+.+.+..++..+.. +...+++|++.
T Consensus 246 ~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~~~--- 322 (382)
T d2bkwa1 246 YEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVA--- 322 (382)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECS---
T ss_pred ccccccccccCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhccCCcEEEEcCC---
Confidence 001 11111112 35556788888899999999999999999999998888777653 22356788653
Q ss_pred cccccccccCccCCccHHHHHHHHHHHhcCcEEEEeceeC---CeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy13453 198 WDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQ---DRLFMRFAICSSQTEESDVQLGWNEIRTATEEVL 271 (764)
Q Consensus 198 ~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~---g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~ 271 (764)
+ ...+.+.|.+.|..+- ..++ +..++|+..+...+++++++.+++.++.+.+.|.
T Consensus 323 -------------~----~~~~~~~L~~~gi~i~--~G~~~~~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~~L~ 380 (382)
T d2bkwa1 323 -------------D----PPDVIAFLKSHGVVIA--GGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQ 380 (382)
T ss_dssp -------------C----HHHHHHHHHHTTEECB--CCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTT
T ss_pred -------------C----HHHHHHHHHHCCeEEE--CCCChhhcCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHHHC
Confidence 1 1346677777886432 2222 3467999755566778889999998887766553
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=97.38 E-value=0.00066 Score=71.94 Aligned_cols=217 Identities=14% Similarity=0.039 Sum_probs=127.2
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCc
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPL 94 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wl 94 (764)
.|.|+..+++..+-.. +..+ ..|+++|++.+.+... .+.++|.-.-..+.|.+=|++++.+ +.++
T Consensus 131 ~h~si~~g~~~~~~~~---~~~~-----hnd~~~le~~l~~~~~--~~~~vv~e~v~s~~G~i~pl~~l~~l~~~~~~~l 200 (383)
T d1bs0a_ 131 SHASLLEAASLSPSQL---RRFA-----HNDVTHLARLLASPCP--GQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWL 200 (383)
T ss_dssp CCHHHHHHHHTSSSEE---EEEC-----TTCHHHHHHHHHSCCS--SCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEE
T ss_pred ccHHHhhccccCCCcc---eEec-----chHHHHHHHHhcccCC--CceEEEecCCCCCCCcccchhHHHHHHHhcCcEE
Confidence 8999999998866443 5554 4689999999986433 2233344444446799999999876 8999
Q ss_pred eeccccccc-c---c-e----------eeeecCCCcc--cccccc-c---ccc---CCcccCCCCcc---cHHHHHHHHH
Q psy13453 95 KVGGVLRRV-Y---S-S----------CLVPRGQKSL--RTTVLF-H---FLF---QHWQIPLGRRF---RALKLWMTLR 147 (764)
Q Consensus 95 HVDa~l~~~-y---~-s----------~ll~rd~~~l--~~~~s~-~---~d~---~d~tle~SRr~---~ALklWatL~ 147 (764)
+||.++... + + + +++..-.+.+ ...+.. . .++ .....-.|-+. .+..+=+++.
T Consensus 201 ivDeah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka~g~~Gg~v~~~~~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~ 280 (383)
T d1bs0a_ 201 MVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLA 280 (383)
T ss_dssp EEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSCCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHH
T ss_pred EeecceeeeecCCcccchHHHcCCccccccccccccccccccccccchhHHHHHHhhchhhhhcccccchHHHHHHHHHH
Confidence 999965211 0 0 0 1111000000 000000 0 011 01111122211 1112233444
Q ss_pred HccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcC
Q psy13453 148 SYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARK 227 (764)
Q Consensus 148 ~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G 227 (764)
.+=.....++.++..++.+++.+.+++. +|.+.. .+.+|+.... ..++...++.++|.++|
T Consensus 281 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~-g~~~~~-~~s~Ii~v~~-----------------g~~~~a~~~~~~L~~~G 341 (383)
T d1bs0a_ 281 VIRSDEGDARREKLAALITRFRAGVQDL-PFTLAD-SCSAIQPLIV-----------------GDNSRALQLAEKLRQQG 341 (383)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHHHHTTS-SCEECS-CCSSBCCEEE-----------------ESHHHHHHHHHHHHHTT
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhc-CCccCC-CCCCEEEEEE-----------------CCHHHHHHHHHHHHHCC
Confidence 4444566777788889999999999985 577654 3355544432 12234568999999999
Q ss_pred cEEE--Eece-eCCeeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 228 VIYI--VKGS-FQDRLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 228 ~~~v--s~t~-l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
.+.. .+.. -++...+|+++..-| |++||+.+++.|+.+
T Consensus 342 i~v~~~~~PtVp~g~~~lRi~~~a~h-t~edid~l~~~L~~~ 382 (383)
T d1bs0a_ 342 CWVTAIRPPTVPAGTARLRLTLTAAH-EMQDIDRLLEVLHGN 382 (383)
T ss_dssp EECCEECTTSSCTTCEEECCBCCTTC-CHHHHHHHHHHHHHH
T ss_pred ceEEEEcCCCCCCCCceEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 8532 2222 256778999655555 689999999998875
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=97.36 E-value=0.0024 Score=68.46 Aligned_cols=153 Identities=16% Similarity=0.163 Sum_probs=103.5
Q ss_pred cCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEE
Q psy13453 555 LSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVA 634 (764)
Q Consensus 555 ~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi 634 (764)
...|-...+|+ .++.|=|.. .++.+++|..|+..++.+. . .+...|
T Consensus 55 ~~nPT~~~LE~----~la~LE~~~-----------~a~~~~SGmaAi~~~~~~l----~---------------~~gd~i 100 (421)
T d2ctza1 55 IMNPTVDVLEK----RLAALEGGK-----------AALATASGHAAQFLALTTL----A---------------QAGDNI 100 (421)
T ss_dssp TBCHHHHHHHH----HHHHHHTCS-----------EEEEESSHHHHHHHHHHHH----C---------------CTTCEE
T ss_pred CCCHHHHHHHH----HHHHHhCCC-----------eEEEecChHHHHHHHHHhh----c---------------ccccce
Confidence 46787788887 556665543 3567777776654444321 1 112357
Q ss_pred EecCCcchhHHH----HHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHH
Q psy13453 635 YTSDQSNSSVEK----SAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPIC 710 (764)
Q Consensus 635 ~~S~~aH~Sv~k----Aa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~ 710 (764)
+++........+ .+...|+.+..+..++ ..+..++.+++++ -+|.+=..++.+.-+-||++|+++|
T Consensus 101 l~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~----~~~~~~~~~~~~t------~li~~EtpsNP~l~v~Di~~i~~iA 170 (421)
T d2ctza1 101 VSTPNLYGGTFNQFKVTLKRLGIEVRFTSREE----RPEEFLALTDEKT------RAWWVESIGNPALNIPDLEALAQAA 170 (421)
T ss_dssp EECSCCCHHHHHHHHTHHHHTTCEEEECCTTC----CHHHHHHHCCTTE------EEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred eecCCcCCchhHHHHHHHhhccccceeccccc----CcchhccccCCCc------eEEEEcCCCcceeEecchHHHHHHH
Confidence 777776644433 3455788887765332 2445555555543 4888899999999999999999999
Q ss_pred HhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 711 QEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 711 ~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
+++|+.+.||-.|+..-+++.... -| ||-+.-|..|+++.-
T Consensus 171 ~~~g~~~vvDnT~a~tP~~~~Pl~---~G---aDiVvhS~TKyl~GH 211 (421)
T d2ctza1 171 REKGVALIVDNTFGMGGYLLRPLA---WG---AALVTHSLTKWVGGH 211 (421)
T ss_dssp HHHTCEEEEECGGGGGGTSCCGGG---GT---CSEEEEETTTTTTCS
T ss_pred HhcCCceEecccccccceeccccc---cC---CcEEEEechhhccCC
Confidence 999999999999985333332222 23 599999999998753
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=97.16 E-value=0.0024 Score=67.62 Aligned_cols=151 Identities=17% Similarity=0.058 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcc
Q psy13453 562 ELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSN 641 (764)
Q Consensus 562 ~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH 641 (764)
..+.++.+.+.+...... .-..|+.+|||||..|++.||....+ +.++.....-|
T Consensus 79 ~~~~~la~~l~~~~~~~~---------~~v~f~~sGseA~e~Aik~Ar~~t~r----------------~~ii~~~~~yH 133 (387)
T d1vefa1 79 PMRGEFYRTLTAILPPEL---------NRVFPVNSGTEANEAALKFARAHTGR----------------KKFVAAMRGFS 133 (387)
T ss_dssp HHHHHHHHHHHHTSCTTE---------EEEEEESSHHHHHHHHHHHHHHHHSC----------------CEEEEETTCCC
T ss_pred chHHHHHHHhhhhccccc---------eeeccccCchHHHHHHHHHHHhhccc----------------ceecccccCCC
Confidence 444455556666543322 23689999999999999999976311 22344444455
Q ss_pred hhHHHHHHhCCC------------ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc----HHH
Q psy13453 642 SSVEKSAIIGDV------------PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN----LEE 705 (764)
Q Consensus 642 ~Sv~kAa~~lGl------------~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp----l~e 705 (764)
-...-+..+.|- .+..+|-+ |.+.|++.++++. .+|+.---....|.+-+ +++
T Consensus 134 G~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~~-----d~~~l~~~~~~~i------Aavi~EPi~g~~G~~~~~~~~l~~ 202 (387)
T d1vefa1 134 GRTMGSLSVTWEPKYREPFLPLVEPVEFIPYN-----DVEALKRAVDEET------AAVILEPVQGEGGVRPATPEFLRA 202 (387)
T ss_dssp CSSHHHHHTCCCHHHHGGGCSCSSCEEEECTT-----CHHHHHHHCCTTE------EEEEECSEETTTTSEECCHHHHHH
T ss_pred CCccceEeccCCccccCCCCCCCCCceEeCCC-----CHHHHHHhcCCCe------EEEEEECCCCCCCCccCCHHHHHH
Confidence 444444443331 35556543 5788888876543 34443222223455545 999
Q ss_pred HHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEc
Q psy13453 706 LGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFN 749 (764)
Q Consensus 706 Ia~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d 749 (764)
|.++|++||+.|.+|=.+.|+-....-+.+..-|+ ..|-+++.
T Consensus 203 l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v-~PDi~~~g 245 (387)
T d1vefa1 203 AREITQEKGALLILDEIQTGMGRTGKRFAFEHFGI-VPDILTLA 245 (387)
T ss_dssp HHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTC-CCSEEEEC
T ss_pred HHHHHHHcCceEEecccccccCccCCCcccccCCc-CCceeeec
Confidence 99999999999999999987533222222222245 46777765
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=97.13 E-value=0.002 Score=68.60 Aligned_cols=217 Identities=11% Similarity=-0.012 Sum_probs=128.8
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcc-cccccCchhhhc-----CCC
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTL-HQDIQSLNAPVS-----NGP 93 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~-~G~iDpi~~ia~-----~~w 93 (764)
.|.|+..++++-+-.. ++.+-+ |+++|++.+++.... .+.+|.+-|-+. .|.+=|+.++.+ +.+
T Consensus 140 ~Hasi~~g~~ls~a~~---~~f~Hn-----d~~~l~~l~~~~~~~--~~~~iv~egvySmdGd~apl~~l~~L~~~y~~~ 209 (396)
T d2bwna1 140 NHASMIEGIKRNAGPK---RIFRHN-----DVAHLRELIAADDPA--APKLIAFESVYSMDGDFGPIKEICDIAEEFGAL 209 (396)
T ss_dssp CCHHHHHHHHHSCCCE---EEECTT-----CHHHHHHHHHHSCTT--SCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCE
T ss_pred hhhccchhhhccccCc---eEeecc-----hHHHhhhHHhhhccc--CceeEEEEeeccCcccccccHhHHHHhhhhcce
Confidence 8999999999988655 666543 677888888765443 345555556554 799999999876 889
Q ss_pred ceeccccccc-cc----eee----eecCCCccccccccc--------------ccc---C--CcccCCCC-cccHHHHHH
Q psy13453 94 LKVGGVLRRV-YS----SCL----VPRGQKSLRTTVLFH--------------FLF---Q--HWQIPLGR-RFRALKLWM 144 (764)
Q Consensus 94 lHVDa~l~~~-y~----s~l----l~rd~~~l~~~~s~~--------------~d~---~--d~tle~SR-r~~ALklWa 144 (764)
+-||-++.-. ++ +++ +..+.+.+..+|+-. .++ . .+....+= ...+...-+
T Consensus 210 L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~~Gg~v~~~~~~i~~l~~~~~~~ifStalpp~~~aa~~~ 289 (396)
T d2bwna1 210 TYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQA 289 (396)
T ss_dssp EEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCCEEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHH
T ss_pred eeeccceeeeeeccccccchhhcCCceeeeeeeecccccccccccccchhHHHHHHHHhhcchhhhcccCcHHHHHHHHH
Confidence 9888865211 11 110 011111111111100 010 0 11111111 222223344
Q ss_pred HHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHH
Q psy13453 145 TLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRII 224 (764)
Q Consensus 145 tL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~ 224 (764)
++..+-.+...++-++..++++++.+.+++. ++.+. +.+..|+.+.. +.++.+..+.++|.
T Consensus 290 al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~-g~~~~-~~~spIvpv~i-----------------g~~~~~~~~a~~lL 350 (396)
T d2bwna1 290 SIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-GMPII-DHGSHIVPVVI-----------------GDPVHTKAVSDMLL 350 (396)
T ss_dssp HHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCSSSCEEEEC-----------------CCHHHHHHHHHHHH
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHHHhc-CCCcC-CCCCCEEEEEe-----------------CCHHHHHHHHHHHH
Confidence 4555444555666667778899999998874 66654 35567777643 23345677888865
Q ss_pred -hcCcEEEE--ec-eeCCeeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 225 -ARKVIYIV--KG-SFQDRLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 225 -~~G~~~vs--~t-~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
+.|.+... ++ .-.+..-||++++.-| |++||+.+++.|+++
T Consensus 351 ~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~h-t~edId~l~~~L~~i 395 (396)
T d2bwna1 351 SDYGVYVQPINFPTVPRGTERLRFTPSPVH-DLKQIDGLVHAMDLL 395 (396)
T ss_dssp HHHCEECCEECTTTSCTTCCEEEECCCTTS-CHHHHHHHHHHHHHH
T ss_pred HhCCEEEEEECCCcCCCCCeeEEEEeCccC-CHHHHHHHHHHHHHh
Confidence 57875322 22 2245667999766666 588999999999875
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.11 E-value=0.0043 Score=65.99 Aligned_cols=153 Identities=10% Similarity=-0.007 Sum_probs=93.5
Q ss_pred HHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhHHH
Q psy13453 567 VMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEK 646 (764)
Q Consensus 567 v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv~k 646 (764)
+.+.++++.++.. ..|+.+||+||..|+++||.......... ..+..++.....-|....-
T Consensus 88 ~~~~~~~~~~~~~-----------v~~~~sGseA~e~Aik~ar~~~~~~~~~~--------~~~~~i~~~~~~~hg~t~~ 148 (404)
T d2byla1 88 YEEYITKLFNYHK-----------VLPMNTGVEAGETACKLARKWGYTVKGIQ--------KYKAKIVFAAGNFWGRTLS 148 (404)
T ss_dssp HHHHHHHHHTCSE-----------EEEESSHHHHHHHHHHHHHHHHHHTTCCC--------TTCCEEEEETTCCCCCSHH
T ss_pred HHHhhhhcccccc-----------cccccCccccchhHHHHHHHHhhhccccc--------cccccccccCCCccccccc
Confidence 4446677766643 57999999999999999998654321110 0122345556666655444
Q ss_pred HHHhCC-------C-----ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc----HHHHHHHH
Q psy13453 647 SAIIGD-------V-----PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN----LEELGPIC 710 (764)
Q Consensus 647 Aa~~lG-------l-----~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp----l~eIa~i~ 710 (764)
+....+ . .+..+|.+ |.++|++++.+. ...+|++=--....|.+-+ +++|+++|
T Consensus 149 ~~~~~~~~~~~~~~~p~~~~~~~~p~~-----d~~~l~~~l~~~-----~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc 218 (404)
T d2byla1 149 AISSSTDPTSYDGFGPFMPGFDIIPYN-----DLPALERALQDP-----NVAAFMVEPIQGEAGVVVPDPGYLMGVRELC 218 (404)
T ss_dssp HHTTCCCHHHHTTSCSCCTTEEEECTT-----CHHHHHHHHTST-----TEEEEEECSSBTTTTSBCCCTTHHHHHHHHH
T ss_pred eeccCCCcccccCCCCCCCCeeEeccc-----CHHHHHHhcCCC-----CeEEEEECCccCCCCCccCCHHHHHHHHHHH
Confidence 433321 1 35556653 578888888532 2334443222223354433 99999999
Q ss_pred HhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEc
Q psy13453 711 QEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFN 749 (764)
Q Consensus 711 ~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d 749 (764)
++||+.|++|-.+.|+-....-+.+..-|+ ..|-+++.
T Consensus 219 ~~~g~llI~DEV~tGfgR~G~~~a~~~~gv-~PDi~~~g 256 (404)
T d2byla1 219 TRHQVLFIADEIQTGLARTGRWLAVDYENV-RPDIVLLG 256 (404)
T ss_dssp HHHTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEEEC
T ss_pred HhcCeEEEeeccccccccccccchhhhcCC-CCCEEEEC
Confidence 999999999999877544444344444566 46877553
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=97.08 E-value=0.00092 Score=70.61 Aligned_cols=149 Identities=15% Similarity=-0.005 Sum_probs=97.8
Q ss_pred ccCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceE
Q psy13453 554 WLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633 (764)
Q Consensus 554 ~~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~v 633 (764)
|......-++=+.+.+|+.+..|.+-. ....+.+.|++.+...++.+....... +...
T Consensus 66 Y~p~~G~~~lR~aia~~~~~~~~~~~~-------~~~i~~~~~~~~~~~~~l~~~~~~~~~---------------pgd~ 123 (397)
T d3tata_ 66 YLPMEGLNCYRHAIAPLLFGADHPVLK-------QQRVATIQTLGGSGALKVGADFLKRYF---------------PESG 123 (397)
T ss_dssp CCCTTCCHHHHHHHHHHHTCSSCHHHH-------TTCEEECCBSHHHHHHHHHHHHHHHHC---------------SSCC
T ss_pred CCCcccCHHHHHHHHHHHhhccCCcCC-------cCcEEEecCchhHHHHHHHHHHhhhcC---------------CCCc
Confidence 444445556666666666554443221 012333444444444344333332221 1224
Q ss_pred EEecCCcchhHHHHHHhCCCceEEEecCC--CCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---ccHHHHHH
Q psy13453 634 AYTSDQSNSSVEKSAIIGDVPVRQLRSDD--NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLEELGP 708 (764)
Q Consensus 634 i~~S~~aH~Sv~kAa~~lGl~v~~Vp~d~--~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai---Dpl~eIa~ 708 (764)
|++.+-+-......+...|.+++.+|++. .+..|.+++.+.+... ...+.+++....++.||.+ +.+++|++
T Consensus 124 Vlv~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~ 200 (397)
T d3tata_ 124 VWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTL---PARSIVLLHPCCHNPTGADLTNDQWDAVIE 200 (397)
T ss_dssp CEECSSCCTTHHHHHHTTTCCCEECCCCCTTTSSCCHHHHHHHHTTC---CSSCCCEECSSSCSSSCCCCCHHHHHHHHH
T ss_pred ceecccCccccHHHHHHcCCEEEEEecchhhccccchHHHHHHhhhc---ccccEEEEecCCCCCCCeeCCHHHHHHHHH
Confidence 67788888888888889999999999863 4567888877776543 3345677777789999988 67788899
Q ss_pred HHHhcCCEEEEeccccccc
Q psy13453 709 ICQEYNIWLHVDAAYAGSA 727 (764)
Q Consensus 709 i~~~~glwLHVDaA~Gg~~ 727 (764)
+|++|++++..|-+|....
T Consensus 201 ~a~~~~~~ii~De~Y~~l~ 219 (397)
T d3tata_ 201 ILKARELIPFLDIAYQGFG 219 (397)
T ss_dssp HHHHTTCCCEECBSCTTSS
T ss_pred HHhhcCeeEEeehhhhhhc
Confidence 9999999999999998754
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=97.06 E-value=0.0016 Score=67.62 Aligned_cols=140 Identities=14% Similarity=0.050 Sum_probs=99.1
Q ss_pred HHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhH----H
Q psy13453 570 WLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV----E 645 (764)
Q Consensus 570 ~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv----~ 645 (764)
.+++|-|.. +++.+++|..|+..++.+.. . +.-.|+++....... .
T Consensus 6 ~la~Leg~~-----------~a~~~sSGMaAi~~~l~~ll----~---------------~Gd~iv~~~~~Yg~t~~~~~ 55 (331)
T d1pffa_ 6 KIAKLEHAE-----------ACAATASGMGAIAASVWTFL----K---------------AGDHLISDDCLYGCTHALFE 55 (331)
T ss_dssp HHHHHHTCS-----------EEEEESSHHHHHHHHHHHHC----C---------------TTCEEEEESCCCHHHHHHHH
T ss_pred HHHHHhCCC-----------eEEEECCHHHHHHHHHHHHh----C---------------CCCEEEEeCCCchHHHHHHH
Confidence 566665542 46778888888766655321 1 122466666655433 3
Q ss_pred HHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHH-HhcCCEEEEecccc
Q psy13453 646 KSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPIC-QEYNIWLHVDAAYA 724 (764)
Q Consensus 646 kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~-~~~glwLHVDaA~G 724 (764)
+-..-+|+.+..++.+ |++.+++++++.+ .+|..-..++.+..+.|++++++++ +++|+.+.||-.|+
T Consensus 56 ~~l~~~gi~~~~~d~~-----d~~~~~~~i~~~t------~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~a 124 (331)
T d1pffa_ 56 HQLRKFGVEVDFIDMA-----VPGNIEKHLKPNT------RIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFA 124 (331)
T ss_dssp THHHHTTCEEEEECTT-----STTHHHHTCCTTE------EEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTT
T ss_pred HHHHhcCeEEEEeccc-----chhhHhhhccccc------ceeeeecccccccccccchhhhhhhhcccCceEEeecccc
Confidence 3355689999887764 5777888876653 4888888899999999999999985 67899999999999
Q ss_pred ccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 725 GSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 725 g~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
...+.-|- . -| ||-+.-|.-|+++.-
T Consensus 125 tp~~~~pl-~---~G---aDiVv~S~TKy~~Gh 150 (331)
T d1pffa_ 125 SPILTNPL-D---LG---VDIVVHSATKYINGH 150 (331)
T ss_dssp HHHHCCGG-G---GT---CSEEEEETTTTTSSS
T ss_pred cccccccc-c---cC---CCEEEecchhhcCCC
Confidence 86554441 1 12 699999999998753
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=96.94 E-value=0.0055 Score=65.88 Aligned_cols=76 Identities=12% Similarity=0.026 Sum_probs=47.2
Q ss_pred eeeHHHHHhhcCCCCCCeEEecCCC----------CCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccc---cccCch
Q psy13453 21 IYESFKATHSLSGTPDQVRLSGLPD----------SEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQ---DIQSLN 86 (764)
Q Consensus 21 ~YSv~KAa~~LGl~~~~v~~Vpvd~----------~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G---~iDpi~ 86 (764)
||...-++.+.|... +.++.+. .+.+|+++|++.|++..... ++++ +-..-.+.-| .++++.
T Consensus 132 ~~~~~~~~~~~G~~~---~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~-~~~i~~e~~~~~~gg~~~~~~~l~ 207 (467)
T d2v1pa1 132 FDTTQGHSQINGCTV---RNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNN-VPYIVATITSNSAGGQPVSLANLK 207 (467)
T ss_dssp CHHHHHHHHHTTCEE---EECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGG-CCCEEEESSBCGGGCBCCCHHHHH
T ss_pred ccccHHHHHHcCCee---eecccccccccccccccccCCCHHHHHHHHhhcCccc-cceeeecceeeccccccCCHHHHH
Confidence 355556666777655 6666552 46899999999998764422 2222 3222222222 346777
Q ss_pred hhhc-----CCCceecccc
Q psy13453 87 APVS-----NGPLKVGGVL 100 (764)
Q Consensus 87 ~ia~-----~~wlHVDa~l 100 (764)
++++ ++++|+|++.
T Consensus 208 ~i~~ia~~~g~~l~~D~a~ 226 (467)
T d2v1pa1 208 AMYSIAKKYDIPVVMDSAR 226 (467)
T ss_dssp HHHHHHHHTTCCEEEECTT
T ss_pred HHHHHHHHcCCEEEEechh
Confidence 7665 9999999963
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=96.92 E-value=0.0034 Score=67.25 Aligned_cols=160 Identities=13% Similarity=-0.040 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcch
Q psy13453 563 LEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNS 642 (764)
Q Consensus 563 lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~ 642 (764)
.+..+.+.+.++.+..+ ...|+.+|||||-.|++.||....+ +.+|-....-|=
T Consensus 93 ~~~~la~~~~~~~~~~~----------~v~f~~sGseA~e~Alk~ar~~t~r----------------~~ii~~~~~yHG 146 (427)
T d2gsaa_ 93 LENVLAEMVNDAVPSIE----------MVRFVNSGTEACMAVLRLMRAYTGR----------------DKIIKFEGCYHG 146 (427)
T ss_dssp HHHHHHHHHHHHSTTCS----------EEEEESSHHHHHHHHHHHHHHHHCC----------------CEEEEETTCCCC
T ss_pred HHHHHHHHHHhhCCccc----------cccccCCcHHHHHHHHHHHHHhcCC----------------CeEEEEeccccc
Confidence 44455667777765432 3579999999999999999976311 112222223331
Q ss_pred hHHHH-------HHhCCC------------ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc-
Q psy13453 643 SVEKS-------AIIGDV------------PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN- 702 (764)
Q Consensus 643 Sv~kA-------a~~lGl------------~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp- 702 (764)
...-+ ....++ ....+| .-|+++|++.+++.. ....+|+.---....|.+-|
T Consensus 147 ~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-----~~~~~~le~~~~~~~---~~iaavi~Epi~g~~G~~~~~ 218 (427)
T d2gsaa_ 147 HADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTP-----YNDLEAVKALFAENP---GEIAGVILEPIVGNSGFIVPD 218 (427)
T ss_dssp SCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEEC-----TTCHHHHHHHHTTST---TTEEEEEECSSBCSSSCBCCC
T ss_pred CcceeeeecCCcccccCCCCCCCCcccCccceeccC-----cchHHHHHHHHHhCC---CCeEEEEEcCCcCCCCCccCC
Confidence 11000 011111 122222 246889999887532 23445555443344577776
Q ss_pred ---HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCc
Q psy13453 703 ---LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNF 758 (764)
Q Consensus 703 ---l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~ 758 (764)
+++|.++|++||+.|++|-.+.|+ ....-+.+..-|+ ..|-+++.=-...+.|.
T Consensus 219 ~~~l~~l~~lc~~~~~llI~DEv~tG~-r~g~~~~~~~~gi-~PDi~~~gK~lggG~p~ 275 (427)
T d2gsaa_ 219 AGFLEGLREITLEHDALLVFDEVMTGF-RIAYGGVQEKFGV-TPDLTTLGKIIGGGLPV 275 (427)
T ss_dssp TTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTTCHHHHTTC-CCSEEEECGGGGTTSCC
T ss_pred HHHHHHHHHHHHHhceeeeeccccccc-eecccchHHhcCC-CHHHHhhhhccCCCcce
Confidence 999999999999999999999874 2222222223355 46777776544344443
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=96.83 E-value=0.0055 Score=64.93 Aligned_cols=151 Identities=11% Similarity=0.071 Sum_probs=106.4
Q ss_pred cCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEE
Q psy13453 555 LSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVA 634 (764)
Q Consensus 555 ~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi 634 (764)
...|-...+|+ .+++|=|.. .++.+++|..|+..++.+.. + +...|
T Consensus 55 ~~nPt~~~le~----~la~LEg~~-----------~a~~~~SGMaAi~~~l~~l~----~---------------~Gd~i 100 (391)
T d1cl1a_ 55 RGTLTHFSLQQ----AMCELEGGA-----------GCVLFPCGAAAVANSILAFI----E---------------QGDHV 100 (391)
T ss_dssp TCCHHHHHHHH----HHHHHHTCS-----------EEEEESSHHHHHHHHHHHHC----C---------------TTCEE
T ss_pred CCChhHHHHHH----HHHHHhCCc-----------cEEEeccccceeeehhhccc----C---------------CCCeE
Confidence 45677777877 556665542 46778888877766655331 1 12357
Q ss_pred EecCCcchhHHHHHH----hCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHH
Q psy13453 635 YTSDQSNSSVEKSAI----IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPIC 710 (764)
Q Consensus 635 ~~S~~aH~Sv~kAa~----~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~ 710 (764)
+++...+....+-+. -.|+.+..+..+ |.+++++++++.++ +|..=..++.+.-+-||++|+++|
T Consensus 101 v~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~~-----d~~~~~~~i~~~t~------~i~~EtpsNP~l~v~Di~~i~~~a 169 (391)
T d1cl1a_ 101 LMTNTAYEPSQDFCSKILSKLGVTTSWFDPL-----IGADIVKHLQPNTK------IVFLESPGSITMEVHDVPAIVAAV 169 (391)
T ss_dssp EEETTSCHHHHHHHHHTGGGGTCEEEEECTT-----CGGGGGGTCCTTEE------EEEEESSCTTTCCCCCHHHHHHHH
T ss_pred EEecccccchhhhhhhcccccccccccccCc-----cccccccccccccc------eeeecccCcccccccccHHHHHHH
Confidence 788888866555443 357777776543 45667777765543 788888889999999999999999
Q ss_pred Hhc--CCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 711 QEY--NIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 711 ~~~--glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
+++ |+.+.||-.|+...+.-| ..+ .||-+.-|.-|+++.-
T Consensus 170 ~~~~~g~~~vVDnT~atP~~~~P-l~~------GaDivvhS~TKy~~Gh 211 (391)
T d1cl1a_ 170 RSVVPDAIIMIDNTWAAGVLFKA-LDF------GIDVSIQAATKYLVGH 211 (391)
T ss_dssp HHHCTTCEEEEECTTTTTTSSCG-GGG------TCSEEEEETTTTTTCS
T ss_pred HhccCCcEEEEeccccchhhhcc-ccc------ccceEEeecchhcccc
Confidence 774 999999999988655444 221 3699999999998754
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=96.74 E-value=0.014 Score=61.86 Aligned_cols=151 Identities=11% Similarity=0.075 Sum_probs=106.6
Q ss_pred cCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEE
Q psy13453 555 LSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVA 634 (764)
Q Consensus 555 ~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi 634 (764)
...|-...+|+ .+++|-|.. ..+.+++|..|+..++.+.. .+...|
T Consensus 56 ~~nPT~~~le~----~la~LEg~~-----------~a~~~sSGmaAi~~~~l~l~-------------------~~gd~v 101 (394)
T d1e5ea_ 56 LGNPTVSNLEG----KIAFLEKTE-----------ACVATSSGMGAIAATVLTIL-------------------KAGDHL 101 (394)
T ss_dssp TCCHHHHHHHH----HHHHHHTCS-----------EEEEESSHHHHHHHHHHHHC-------------------CTTCEE
T ss_pred CCCHHHHHHHH----HHHHHhCCc-----------ceeeeccchHHHHHHHHhhc-------------------cccccc
Confidence 45677788887 556676643 35777888777766554321 122357
Q ss_pred EecCCcchhHHH----HHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHH
Q psy13453 635 YTSDQSNSSVEK----SAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPIC 710 (764)
Q Consensus 635 ~~S~~aH~Sv~k----Aa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~ 710 (764)
++++..+....+ -..-.|+.++.+..+ |+++++++|++.++ +|.+-..++.+..+-||+++++++
T Consensus 102 v~~~~~yg~t~~~~~~~~~~~gi~~~~~d~~-----d~~~~~~~i~~~t~------lv~~Etp~NP~l~v~Di~~~~~~~ 170 (394)
T d1e5ea_ 102 ISDECLYGCTHALFEHALTKFGIQVDFINTA-----IPGEVKKHMKPNTK------IVYFETPANPTLKIIDMERVCKDA 170 (394)
T ss_dssp EEESCCCHHHHHHHHTHHHHTTCEEEEECTT-----STTHHHHHCCTTEE------EEEEESSCTTTCCCCCHHHHHHHH
T ss_pred ccccceeehhhHhHHHHhhccceeeeccCCC-----CHHHHHHhhccccc------EEEEeccCCcceeeehhhhhhhcc
Confidence 777776655433 344578898888764 35678888876644 888888889999999999998866
Q ss_pred H-hcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 711 Q-EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 711 ~-~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
+ ++|+.+.||-+|+...+.-| ..+ .||-+.-|.-|+++.-
T Consensus 171 ~~~~g~~vvvDnT~atP~~~~P-l~~------GaDiVvhS~TKy~~Gh 211 (394)
T d1e5ea_ 171 HSQEGVLVIADNTFCSPMITNP-VDF------GVDVVVHSATKYINGH 211 (394)
T ss_dssp HTSTTCEEEEECTTTCTTTCCG-GGG------TCSEEEEETTTTTTCS
T ss_pred ccccCeEEEecCcccCcccCCc-hhc------CCCEEEechhhhcCCC
Confidence 5 57899999999988655443 221 3699999999998754
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.73 E-value=0.0087 Score=63.36 Aligned_cols=149 Identities=15% Similarity=0.094 Sum_probs=98.8
Q ss_pred cCCchHHHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEE
Q psy13453 555 LSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVA 634 (764)
Q Consensus 555 ~~sp~~t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi 634 (764)
...|-...+|+ .|+.|-|.. .++.+++|..|+. ++... +. +...|
T Consensus 52 ~gnPT~~~lE~----~la~LE~~~-----------~a~~~sSGmaAi~-~~l~~----l~---------------~gd~i 96 (393)
T d1n8pa_ 52 SQNPNRENLER----AVAALENAQ-----------YGLAFSSGSATTA-TILQS----LP---------------QGSHA 96 (393)
T ss_dssp TCCHHHHHHHH----HHHHHTTCS-----------EEEEESCHHHHHH-HHHHT----SC---------------SSCEE
T ss_pred CCChHHHHHHH----HHHHHhCCc-----------eEEEecCchhHHH-hhhhc----cc---------------CCCee
Confidence 45677777887 556665542 3567777754443 32211 11 11134
Q ss_pred EecCCcchhHHHHH----HhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHH
Q psy13453 635 YTSDQSNSSVEKSA----IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPIC 710 (764)
Q Consensus 635 ~~S~~aH~Sv~kAa----~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~ 710 (764)
+++...-.....-. ..+|+.+..+. .+.++++++|+++.+ +|.+=..++.+.-+-||++|+++|
T Consensus 97 v~~~~~yg~t~~~~~~~l~~~gi~~~~~~------~~~~~~~~~i~~~t~------lv~~EspsNP~l~v~Di~~ia~~a 164 (393)
T d1n8pa_ 97 VSIGDVYGGTHRYFTKVANAHGVETSFTN------DLLNDLPQLIKENTK------LVWIETPTNPTLKVTDIQKVADLI 164 (393)
T ss_dssp EEESSCCHHHHHHHHHTSTTTCSCCEEES------SHHHHHHHHSCSSEE------EEEECSSCTTTCCCCCHHHHHHHH
T ss_pred eeeeeecccchhhhhhhhhcccceeEEee------cchHHHHHHhhhhcc------eeEecCcchhhhhccchhhhhhhh
Confidence 55555444433332 23577776653 245678888766543 888888999999999999999999
Q ss_pred H----hcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 711 Q----EYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 711 ~----~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
+ ++|+.+.||-.|+...+.-|- . - .||-+.-|.-|+++.-
T Consensus 165 ~~~~~~~g~~lvVDnT~atP~~~~Pl-~---~---GADiVvhS~TKyi~Gh 208 (393)
T d1n8pa_ 165 KKHAAGQDVILVVDNTFLSPYISNPL-N---F---GADIVVHSATKYINGH 208 (393)
T ss_dssp HHHTTTTTCEEEEECTTTHHHHCCGG-G---G---TCSEEEEETTTTTTCS
T ss_pred hhhcccCCceEEEecCccCcccCCch-h---h---CCCEEEEccccccCCC
Confidence 9 678999999999886554431 1 1 3699999999998754
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=96.67 E-value=0.0065 Score=63.68 Aligned_cols=222 Identities=10% Similarity=0.059 Sum_probs=129.1
Q ss_pred eeHHHHHhhcCCCCCCeEEecCC--CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhh---c-----C
Q psy13453 22 YESFKATHSLSGTPDQVRLSGLP--DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPV---S-----N 91 (764)
Q Consensus 22 YSv~KAa~~LGl~~~~v~~Vpvd--~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia---~-----~ 91 (764)
.+...+++..|... +.+|.+ +++.+|+++|+++++.. +.+++-+-++-+||.+=+.+++. + +
T Consensus 125 ~~~~~~~~~~~~~~---v~~~~~~~~~~~~d~~~l~~~~~~~-----~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~ 196 (388)
T d1j32a_ 125 VSYPEMVKLAEGTP---VILPTTVETQFKVSPEQIRQAITPK-----TKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAG 196 (388)
T ss_dssp THHHHHHHHTTCEE---EEECCCGGGTTCCCHHHHHHHCCTT-----EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCeE---EEEecccccccCCCHHHHHHhCCCC-----CeEEEECCCCCCCCcccchhhhhhhhcccccCC
Confidence 34567788888766 888886 35689999999988642 23555556789999986655533 2 7
Q ss_pred CCceeccccccc-c-----c------------eeeeecCCCccc-cccccccc---------cCCcccCCCCcccHHHHH
Q psy13453 92 GPLKVGGVLRRV-Y-----S------------SCLVPRGQKSLR-TTVLFHFL---------FQHWQIPLGRRFRALKLW 143 (764)
Q Consensus 92 ~wlHVDa~l~~~-y-----~------------s~ll~rd~~~l~-~~~s~~~d---------~~d~tle~SRr~~ALklW 143 (764)
+|+=+|-+.... | . .+++..-.+.+. .-+.+.+- ........+-....+..+
T Consensus 197 ~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 276 (388)
T d1j32a_ 197 LWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQY 276 (388)
T ss_dssp CEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHH
T ss_pred eEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhhhcchhHeEEEEECHHHHHHHHHhhhhccccccHHHHH
Confidence 777666642100 0 0 011111111110 00000000 000000011122233333
Q ss_pred HHHHH--ccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHH
Q psy13453 144 MTLRS--YGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYD 221 (764)
Q Consensus 144 atL~~--lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~ 221 (764)
++... .+.+-++++.+..-+..+++.+.|++++++++ ..|+-+..+|--.|.. ..+ ..++.+
T Consensus 277 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~-~~p~gg~~l~~~l~~~-------------~~~--~~~~~~ 340 (388)
T d1j32a_ 277 GAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLEC-PKPDGAFYMFPSIAKT-------------GRS--SLDFCS 340 (388)
T ss_dssp HHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBC-CCCCBTTEECCBCGGG-------------TCC--HHHHHH
T ss_pred HHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCEe-cCCCceEEEEEECCCC-------------CCC--HHHHHH
Confidence 33333 46677788888888888999999999988875 5677666665211110 111 134555
Q ss_pred HHH-hcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 222 RII-ARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 222 ~L~-~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
+|. +.|.++.....+....++|++++ +.++.+++.++.|+++.+.|
T Consensus 341 ~ll~~~gV~v~pG~~F~~~~~~Rls~~---~~~e~l~~al~rl~~~l~~l 387 (388)
T d1j32a_ 341 ELLDQHQVATVPGAAFGADDCIRLSYA---TDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp HHHHHHCEECEEGGGGTCTTBEEEECC---SCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCEEEEeccccCCCCeEEEEEe---CCHHHHHHHHHHHHHHHHHh
Confidence 554 45877666666666779999986 46788999999999887765
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=96.63 E-value=0.023 Score=60.60 Aligned_cols=162 Identities=10% Similarity=-0.043 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchh
Q psy13453 564 EVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSS 643 (764)
Q Consensus 564 E~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~S 643 (764)
..++.+.+.+....+. ...+|+.+|||||-.|+++||.....+.. ..+-+|.....-|-.
T Consensus 88 ~~~l~~~l~~~~~~~~---------~~v~f~~sGseA~e~A~k~ar~~~~~~g~-----------~~~~ii~~~~~yHG~ 147 (429)
T d1s0aa_ 88 AIELCRKLVAMTPQPL---------ECVFLADSGSVAVEVAMKMALQYWQAKGE-----------ARQRFLTFRNGYHGD 147 (429)
T ss_dssp HHHHHHHHHHHSCTTC---------CEEEEESSHHHHHHHHHHHHHHHHHHHTC-----------CCCEEEEETTCCCCS
T ss_pred HHHHHHHHHhhhccCc---------ceeeeccccccchhhhhhhhhheeecccc-----------cccEEEEecCCcccc
Confidence 3445567777765543 24679999999999999999987544311 112244445555655
Q ss_pred HHHHHHhCCC-------------ceEEEecC---C---CCcccHHHHHHHHHHhhhcCCCceEEEEee-ccCCcccc---
Q psy13453 644 VEKSAIIGDV-------------PVRQLRSD---D---NGVLRGDALLTAVKEDLAKGLIPCCLIATL-GTTGTCAF--- 700 (764)
Q Consensus 644 v~kAa~~lGl-------------~v~~Vp~d---~---~g~md~~~Le~~I~~~~~~G~~p~~Vvata-GTT~~Gai--- 700 (764)
..-++.+.|- .....|.. . ...-+.+++++.+.+. +..+.+|+.-= .+..-|.+
T Consensus 148 t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~iaavivEPi~~~~gg~~~~~ 224 (429)
T d1s0aa_ 148 TFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAH---RHEIAAVIIEPIVQGAGGMRMYH 224 (429)
T ss_dssp SHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHH---TTTEEEEEECSSEECTTTCEEBC
T ss_pred chhhhhhcCCccccccccCccccccccccccccccccccchhhhhhhhhhhhhc---CCccceeeecceeccCCCccCCC
Confidence 5555554331 22333332 1 1223455555554433 33444444432 11222332
Q ss_pred -ccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEc
Q psy13453 701 -DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFN 749 (764)
Q Consensus 701 -Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d 749 (764)
+=+++|+++|++||+-|++|=.+.|+-....-+.+..-|+ ..|-+++.
T Consensus 225 ~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~~~~~~~v-~PDi~~~g 273 (429)
T d1s0aa_ 225 PEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEI-APDILCLG 273 (429)
T ss_dssp THHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEEEC
T ss_pred HHHHHHHHHHHHHcCcceehhhcccccccccccccccccee-cccccccc
Confidence 2389999999999999999999888644333223333344 45766664
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=96.62 E-value=0.028 Score=59.74 Aligned_cols=159 Identities=14% Similarity=0.002 Sum_probs=88.5
Q ss_pred HHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCcchhH
Q psy13453 565 VLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSV 644 (764)
Q Consensus 565 ~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~aH~Sv 644 (764)
.++.+.|.++..-.- ....|+.+|||||..|++.||....+ +.++-....-|-..
T Consensus 86 ~~la~~L~~~~~~~~---------~~v~f~~sGseA~e~Alk~Ar~~t~r----------------~~i~~~~~~yHG~t 140 (431)
T d1zoda1 86 VDLATRLANITPPGL---------DRALLLSTGAESNEAAIRMAKLVTGK----------------YEIVGFAQSWHGMT 140 (431)
T ss_dssp HHHHHHHHHHSCTTC---------CEEEEESCHHHHHHHHHHHHHHHHTC----------------CEEEEETTCCCCSS
T ss_pred HHHHHHHHHhCCccc---------ceeeecccccchHHHHHHHHHHhcCC----------------cceeeccccccccc
Confidence 356667777762111 23679999999999999999976311 12344445555444
Q ss_pred HHHHHhCCC-----------ceEEEecCCC---------CcccHHHHHHHHHHhhhc-CCCceEEEEeeccCCcccccc-
Q psy13453 645 EKSAIIGDV-----------PVRQLRSDDN---------GVLRGDALLTAVKEDLAK-GLIPCCLIATLGTTGTCAFDN- 702 (764)
Q Consensus 645 ~kAa~~lGl-----------~v~~Vp~d~~---------g~md~~~Le~~I~~~~~~-G~~p~~VvataGTT~~GaiDp- 702 (764)
.-+....+. ....++.... ..-+.+.++.......+. .....+|++---....|.+-+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~ 220 (431)
T d1zoda1 141 GAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELP 220 (431)
T ss_dssp HHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECC
T ss_pred chhhcccccccccccCCcccCceeeeeecccccccccccchhhhhhHHHHHHHHHHhccccccceeeccccccCCccCCC
Confidence 444443221 2344443211 112334444443322222 223444443332233455554
Q ss_pred ---HHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEc
Q psy13453 703 ---LEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFN 749 (764)
Q Consensus 703 ---l~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d 749 (764)
+++|+++|++||+.|++|=.+.|+.....-+....-|+ ..|-+++.
T Consensus 221 ~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~~~~gv-~PDi~~~g 269 (431)
T d1zoda1 221 DGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGV-TPDILTLS 269 (431)
T ss_dssp TTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTC-CCSEEEEC
T ss_pred HHHHHHHHHHHHhcCceEEeccccccccccccccccccCCC-Ccchhccc
Confidence 99999999999999999999888543332222223355 46766664
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=96.61 E-value=0.024 Score=59.35 Aligned_cols=223 Identities=9% Similarity=-0.048 Sum_probs=124.3
Q ss_pred HHHHHhhcCCCCCCeEEecCCC--CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchh---hhc-----CCC
Q psy13453 24 SFKATHSLSGTPDQVRLSGLPD--SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNA---PVS-----NGP 93 (764)
Q Consensus 24 v~KAa~~LGl~~~~v~~Vpvd~--~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~---ia~-----~~w 93 (764)
....++..|+.. +.+|+++ ++..|+++|++++.+. +-+++-+-+.-++|.+=+.++ +++ ++|
T Consensus 138 ~~~~~~~~G~~~---~~v~~~~~~~~~~~~~~l~~~~~~~-----~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~ 209 (412)
T d1bw0a_ 138 YETVCKAYGIGM---HFYNCRPENDWEADLDEIRRLKDDK-----TKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLP 209 (412)
T ss_dssp HHHHHHHTTCEE---EEEEEEGGGTTEECHHHHHHHCCTT-----EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCC
T ss_pred hhhhhhccCccc---cccccccccccchhhHHHHhhhhcc-----ccccccccccccccccchhhhccccccccccCCee
Confidence 467888999887 8999973 6689999999877653 224456789999999866555 333 788
Q ss_pred ceeccccccc-c------ceeeeecCCCccccccccccccCCcccCCCC-cc----------------------------
Q psy13453 94 LKVGGVLRRV-Y------SSCLVPRGQKSLRTTVLFHFLFQHWQIPLGR-RF---------------------------- 137 (764)
Q Consensus 94 lHVDa~l~~~-y------~s~ll~rd~~~l~~~~s~~~d~~d~tle~SR-r~---------------------------- 137 (764)
+=+|.+.... | .......+.+.....+...--...+++.|-| ++
T Consensus 210 vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (412)
T d1bw0a_ 210 LFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPC 289 (412)
T ss_dssp EEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSC
T ss_pred eechhhHHHhccCCCCCccccccccccccccccccccccCccCccCCCCcccccccchhhcchhhhhhhccccccccCCc
Confidence 8777643111 1 0000000000000000000000111111111 00
Q ss_pred --cHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHH
Q psy13453 138 --RALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDL 215 (764)
Q Consensus 138 --~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~ 215 (764)
....+...+.....+-+.++.++..+..+++.+.+.+.++++. ..|+-+...|--.|.... . ...+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~g~~~-~~p~gg~~l~~~~~~~~~--~-------~~~~-- 357 (412)
T d1bw0a_ 290 TVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAP-TMPRGAMYLMSRIDLEKY--R-------DIKT-- 357 (412)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEE-CCCCBTTEEEEEECGGGB--S-------SCCS--
T ss_pred hhhhhhcccccccccccccccccchhHHHHHHHHHHHHHhcCcee-cCCCCceEEEEeCChhhc--C-------CCCC--
Confidence 0011122222334555667777777888899999999889886 456655544422221000 0 0001
Q ss_pred HHHHHHHHHh-cCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 216 NKAVYDRIIA-RKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 216 n~~L~~~L~~-~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
..++.++|.+ .|.+++-.+...++.++|++++. .++.+++.++.|++..++
T Consensus 358 ~~~~~~~ll~~~gV~v~PG~~Fg~~g~iRis~~~---~~e~l~eal~Rl~~~l~~ 409 (412)
T d1bw0a_ 358 DVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTR---PVEVYREAVERIKAFCQR 409 (412)
T ss_dssp HHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCS---CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCEEEEeccccCCCCeEEEEEcC---CHHHHHHHHHHHHHHHHh
Confidence 2456666655 58766655555666789999863 578888888888777654
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=96.47 E-value=0.0023 Score=65.30 Aligned_cols=205 Identities=8% Similarity=-0.086 Sum_probs=112.4
Q ss_pred EEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc---CCCceecccc---------------
Q psy13453 39 RLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS---NGPLKVGGVL--------------- 100 (764)
Q Consensus 39 ~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~---~~wlHVDa~l--------------- 100 (764)
+.+..+.....+...+++.+.... -+.+-+...+.+|+.-|+.++.+ +..+++|+..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~v~~~~~~t~~~~~~~~i~~~~~~~~v~vDa~~~~~~~~vd~~~~dv~ 190 (360)
T d1bjna_ 116 VFDAKVTVDGLRAVKPMREWQLSD-----NAAYMHYCPNETIDGIAIDETPDFGADVVVAADFSSTILSRPIDVSRYGVI 190 (360)
T ss_dssp EEECEEEETTEEEECCGGGCCCCS-----SCSCEEECSEETTTTEECCCCCCCCTTCCEEEECTTTTTSSCCCGGGCSEE
T ss_pred eeeccccCCCcchhhhhhhhccCC-----ceeEEEecccccccCccccceecccccceeeeeeeccccceeeeeccceeE
Confidence 555555556666666665554322 23323445678888888888765 6667888832
Q ss_pred -----ccc---c-ceeeeecCCCcccccccccc-c---cCCc-cc-CCCC-cccHHHHHHHHHHccHHHHHHHHHHHHHH
Q psy13453 101 -----RRV---Y-SSCLVPRGQKSLRTTVLFHF-L---FQHW-QI-PLGR-RFRALKLWMTLRSYGLKGLQAYLRKHISL 164 (764)
Q Consensus 101 -----~~~---y-~s~ll~rd~~~l~~~~s~~~-d---~~d~-tl-e~SR-r~~ALklWatL~~lG~eGy~~~i~~~i~l 164 (764)
.+. - ++++++.............+ . ..++ .. ..+. ........+.+......+.....++..+.
T Consensus 191 ~~ss~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (360)
T d1bjna_ 191 YAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSILNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQK 270 (360)
T ss_dssp EEETTTTTSSTTCEEEEEEGGGCSCCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred EEEcccccccCCCceeEeeehhhhhccccCCcchhhHHHHhhhhhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 011 1 12333332221111110000 0 0011 11 1111 12222334444444555677777777888
Q ss_pred HHHHHHHHhcCCCeEEeCCCC---ceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEeceeCCeeE
Q psy13453 165 AKKFADLVEQDDRFELVCPPS---MGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLF 241 (764)
Q Consensus 165 A~~l~~~I~~~p~~ell~~P~---l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~l~g~~~ 241 (764)
++++...+...........+. .+++||++. ++ .....+.+.|.++|....+. .+..-.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~rs~~v~~f~~~-~~----------------~~~~~~~~~l~~~Gi~~~~G--~~~~g~ 331 (360)
T d1bjna_ 271 AELLYGVIDNSDFYRNDVAKRNRSRMNVPFQLA-DS----------------ALDKLFLEESFAAGLHALKG--HRVVGG 331 (360)
T ss_dssp HHHHHHHHHHCSSEECCBCGGGBCSSEEEEEES-SG----------------GGHHHHHHHHHHTTEECCBC--CTTTCS
T ss_pred HHHHHHhhhccccccccCCcccccceEEEEEcC-Cc----------------ccHHHHHHHHHHCCCEeecC--CCccCe
Confidence 888888888766655554433 468999874 11 11246778888899743332 111113
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13453 242 MRFAICSSQTEESDVQLGWNEIRTATE 268 (764)
Q Consensus 242 LRi~v~np~Tt~e~i~~~l~~l~~~~~ 268 (764)
+|+.+ .+.+++|||+.+++.|++..+
T Consensus 332 ~Ris~-~~~~t~edV~~li~~l~e~~~ 357 (360)
T d1bjna_ 332 MRASI-YNAMPLEGVKALTDFMVEFER 357 (360)
T ss_dssp EEEEC-CTTSCHHHHHHHHHHHHHHHH
T ss_pred EEEEe-cCCCCHHHHHHHHHHHHHHHH
Confidence 89974 668889999999999998654
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=96.37 E-value=0.016 Score=59.61 Aligned_cols=210 Identities=9% Similarity=0.016 Sum_probs=117.6
Q ss_pred eeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-------CCCc
Q psy13453 22 YESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-------NGPL 94 (764)
Q Consensus 22 YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-------~~wl 94 (764)
.....+++.+|... +.+|.++++.+|+++++.++.+ +-+++-+-++-++|.+=+-+++.. +.++
T Consensus 109 ~~~~~~~~~~g~~v---~~~~~~~~~~~d~~~l~~~~~~------~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~~~~~~ 179 (354)
T d1fg7a_ 109 GMYSVSAETIGVEC---RTVPTLDNWQLDLQGISDKLDG------VKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIV 179 (354)
T ss_dssp THHHHHHHHHTCEE---EECCCCTTSCCCHHHHHTSCTT------EEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEE
T ss_pred ccchhhhhccCcee---eccccccccccchhhhhhcccc------cceeeccCCCccceeEeeecccccccccccccccc
Confidence 44567788889876 8999999999999999987742 124456669999999966555322 4433
Q ss_pred eecccc--ccc----------cceeeeec-CCCccc-cccccccccCCc-------ccCCCCcccHHHHHHHHHHccH--
Q psy13453 95 KVGGVL--RRV----------YSSCLVPR-GQKSLR-TTVLFHFLFQHW-------QIPLGRRFRALKLWMTLRSYGL-- 151 (764)
Q Consensus 95 HVDa~l--~~~----------y~s~ll~r-d~~~l~-~~~s~~~d~~d~-------tle~SRr~~ALklWatL~~lG~-- 151 (764)
-+|-.. +.. +...+..+ -.+.+- .-+...|-.+.. .....-........++...+..
T Consensus 180 iidd~~~~f~~~~~~~~~~~~~~~~iv~~S~SK~~~laGlRiGy~i~~~~~i~~l~~~~~~~~~~~~~~~~a~~~~~~~~ 259 (354)
T d1fg7a_ 180 VADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVIAPYPLSTPVADIAAQALSPQG 259 (354)
T ss_dssp EEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHHHHHHHHSCSSCSCHHHHHHHHHHTSHHH
T ss_pred cccccchhhccccccchhhcccccceEEeCCccccCCCccccccccccchhhhhhhhhcCccchhhHHHHHHHHHHhhhc
Confidence 333311 000 11111111 111100 000000000000 0000011122223333333333
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEE
Q psy13453 152 -KGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIY 230 (764)
Q Consensus 152 -eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~ 230 (764)
+-+.+.+++..+..+++.+.+.+.++++.+.++..+-+.++.. + ...+.+.|.++|.++
T Consensus 260 ~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~p~~~~f~~~~~~----------------~----~~~~~~~L~~~gIlv 319 (354)
T d1fg7a_ 260 IVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK----------------A----SSAVFKSLWDQGIIL 319 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET----------------T----HHHHHHHHHHTTEEC
T ss_pred cccccccchhhhhHHHHHHHHHHhCCCcceeCCCCceEEEEeCC----------------C----HHHHHHHHHHCCcEE
Confidence 3355666777788889999999999887766666655555431 1 135778888999876
Q ss_pred EEecee-CCeeEEEEeccCCCCCHHHHHHHHHHHH
Q psy13453 231 IVKGSF-QDRLFMRFAICSSQTEESDVQLGWNEIR 264 (764)
Q Consensus 231 vs~t~l-~g~~~LRi~v~np~Tt~e~i~~~l~~l~ 264 (764)
...... +...++|+++. ++++.+.+++.|+
T Consensus 320 r~~~~~~~~~~~lRisig----t~ee~~~~l~aLk 350 (354)
T d1fg7a_ 320 RDQNKQPSLSGCLRITVG----TREESQRVIDALR 350 (354)
T ss_dssp EECTTSTTCTTEEEEECC----CHHHHHHHHHHHH
T ss_pred ecCCCCCCCCCEEEEEeC----CHHHHHHHHHHHh
Confidence 554433 33569999875 5678888887775
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=96.30 E-value=0.082 Score=55.52 Aligned_cols=156 Identities=15% Similarity=0.129 Sum_probs=85.3
Q ss_pred HHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCc-eEEEecCCcchhHH
Q psy13453 567 VMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK-LVAYTSDQSNSSVE 645 (764)
Q Consensus 567 v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~-~vi~~S~~aH~Sv~ 645 (764)
+.+.++++.+.+. ..|+.+||+||..|+++||.......... ... ..+-.....|-...
T Consensus 86 ~~~~~~~~~~~~~-----------v~~~~sgs~a~~~a~k~ar~~~~~~~~~~---------~~~~~~~~~~~~~hg~~~ 145 (404)
T d1z7da1 86 CERYLTNLLGYDK-----------VLMMNTGAEANETAYKLCRKWGYEVKKIP---------ENMAKIVVCKNNFSGRTL 145 (404)
T ss_dssp HHHHHHHHHTCSE-----------EEEESSHHHHHHHHHHHHHHHHHHTSCCC---------TTCCEEEEETTC------
T ss_pred HHHhhhhccccce-----------eeeeccccchHHHHHHHHHHHHhhccccc---------ccccccccccccCCCCcc
Confidence 3445666666533 57899999999999999998765432110 011 12222333343333
Q ss_pred HHHHhCCC------------ceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccccc----HHHHHHH
Q psy13453 646 KSAIIGDV------------PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDN----LEELGPI 709 (764)
Q Consensus 646 kAa~~lGl------------~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDp----l~eIa~i 709 (764)
.+....+. .+..+|.+ +.++|+.++..+ ...+|++=--....|.+-+ +++|.++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~-----~iAavi~EPi~g~~G~~~~~~~fl~~l~~l 215 (404)
T d1z7da1 146 GCISASTTKKCTSNFGPFAPQFSKVPYD-----DLEALEEELKDP-----NVCAFIVEPIQGEAGVIVPSDNYLQGVYDI 215 (404)
T ss_dssp --------------------CEEEECTT-----CHHHHHHHHTST-----TEEEEEECSSBSTTTSBCCCTTHHHHHHHH
T ss_pred cccccccccccccCCCCCCccccccccc-----hHHHHHHHhcCC-----CEEEEEEEEEcCCCCCccCCHHHHHHHHHH
Confidence 33322211 23444443 345566555321 2345554333344577666 9999999
Q ss_pred HHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCC
Q psy13453 710 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLL 755 (764)
Q Consensus 710 ~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~ 755 (764)
|++||+.|.+|=.+.|+-....-+.+..-|+ ..|-+|+. |.++
T Consensus 216 c~~~g~llI~DEV~tGfgRtG~~~~~e~~gv-~PDivt~g--K~l~ 258 (404)
T d1z7da1 216 CKKYNVLFVADEVQTGLGRTGKLLCVHHYNV-KPDVILLG--KALS 258 (404)
T ss_dssp HHHTTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEEEC--GGGG
T ss_pred HHHcCCEEEEEcCccCCCcccccccccccCC-CCCEEEEc--cccc
Confidence 9999999999999977543333333333466 57877664 5443
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=96.30 E-value=0.016 Score=61.70 Aligned_cols=176 Identities=14% Similarity=0.053 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
+..+.++.+.+.+++.-... ....|+.+||||+..|++.||....+ +-+|-....-
T Consensus 82 ~~~~~~la~~l~~~~p~~~~--------~~v~f~~sGseA~e~Alk~ar~~t~r----------------~~ii~~~~~y 137 (425)
T d1sffa_ 82 YEPYLELCEIMNQKVPGDFA--------KKTLLVTTGSEAVENAVKIARAATKR----------------SGTIAFSGAY 137 (425)
T ss_dssp CHHHHHHHHHHHHHSSCSSC--------EEEEEESSHHHHHHHHHHHHHHHHTC----------------CEEEEETTCC
T ss_pred CcHHHHHHHHHHhhhhhccc--------ceeeeeccccchhhhHHHHhhhhhcc----------------cceEeecCCC
Confidence 45666678888888843211 23578999999999999999986421 1134444445
Q ss_pred chhHHHHHHhCCC-------------ceEEEecC--CCC--cccHHHHHHHHHHhhhcCCCceEEEEeeccCCcccc---
Q psy13453 641 NSSVEKSAIIGDV-------------PVRQLRSD--DNG--VLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF--- 700 (764)
Q Consensus 641 H~Sv~kAa~~lGl-------------~v~~Vp~d--~~g--~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~Gai--- 700 (764)
|=...-+..+.|. .....+.. ... ..........+.........+.+|+.---..+.|.+
T Consensus 138 HG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vaavi~EPi~g~~G~~~~~ 217 (425)
T d1sffa_ 138 HGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASS 217 (425)
T ss_dssp CCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCC
T ss_pred cCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHHHHhcccccceEEEEecCccCCCCcccCC
Confidence 5444444444331 12222221 111 111122222222222222334455543222233444
Q ss_pred -ccHHHHHHHHHhcCCEEEEeccccccccccchhhhhhcCCCcccEEEEcCCccCCCCcCceee
Q psy13453 701 -DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763 (764)
Q Consensus 701 -Dpl~eIa~i~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P~~~g~l 763 (764)
+=+++|.++|++||+.|++|-.+.|+......+.+..-|+ ..|-+++ -|.++.-+..|++
T Consensus 218 ~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv-~PDi~~~--gK~l~gG~P~~av 278 (425)
T d1sffa_ 218 PAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGV-APDLTTF--AKSIAGGFPLAGV 278 (425)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTS-CCSEEEE--CGGGGTSSCCEEE
T ss_pred HHHHHHHHHHHHHcCceEEeccccccCCCcchhhHHHhcCC-Cccceec--ccccCCCcceEEE
Confidence 4689999999999999999999988654443333333466 5787774 4655544445543
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=96.18 E-value=0.056 Score=55.26 Aligned_cols=221 Identities=14% Similarity=0.080 Sum_probs=119.0
Q ss_pred eHHHHHhhcCCCCCCeEEecCC---CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchh---hhc-----C
Q psy13453 23 ESFKATHSLSGTPDQVRLSGLP---DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNA---PVS-----N 91 (764)
Q Consensus 23 Sv~KAa~~LGl~~~~v~~Vpvd---~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~---ia~-----~ 91 (764)
....+++..|... +.|+++ +++.+|++.+++.+.+. ++-++|-+-+.-++|.+=+.++ +++ +
T Consensus 94 ~~~~~~~~~g~~~---~~v~~~~~~~~~~~d~~~~~~~~~~~----~~~~i~l~~p~NPTG~~~s~~~~~~i~~~~~~~~ 166 (361)
T d1d2fa_ 94 AFYKAIEGNQRTV---MPVALEKQADGWFCDMGKLEAVLAKP----ECKIMLLCSPQNPTGKVWTCDELEIMADLCERHG 166 (361)
T ss_dssp HHHHHHHHTTCEE---EEEECEECSSSEECCHHHHHHHHTST----TEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTT
T ss_pred chhHHHHhhcceE---EeecccccccccccccccchhhcccC----CceeEEecccccccccccchhhhhhhhhhhhhhh
Confidence 5667788888887 777775 45579999999998653 1224566678999998766544 333 8
Q ss_pred CCceeccccccc-cc-------------eeeee-cCCCccc-cccccccc--------------cCCcccCCCCcccHHH
Q psy13453 92 GPLKVGGVLRRV-YS-------------SCLVP-RGQKSLR-TTVLFHFL--------------FQHWQIPLGRRFRALK 141 (764)
Q Consensus 92 ~wlHVDa~l~~~-y~-------------s~ll~-rd~~~l~-~~~s~~~d--------------~~d~tle~SRr~~ALk 141 (764)
+++.+|.+.... |. -.+++ ...+... ..+...+- ......-.+-...++.
T Consensus 167 ~~lI~De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (361)
T d1d2fa_ 167 VRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALT 246 (361)
T ss_dssp CEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHH
T ss_pred eeeeecccccccccccccccccccccccccccccccccccccccccceeeecchhHHHHHHhhhcccccccccchhhhHH
Confidence 899988753211 10 01111 1111000 00000000 0000111111222222
Q ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEeCCCCceeEEE-EeeccccccccccccCccCCccHHHHHH
Q psy13453 142 LWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQ-DDRFELVCPPSMGLVCF-RLKVRFWDKLDNLFGTISFGDNDLNKAV 219 (764)
Q Consensus 142 lWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~-~p~~ell~~P~l~iV~F-ry~P~~~~~~~~~~~~~~~~~d~~n~~L 219 (764)
........+.+-+.++....-+..+.+.+.+.+ .+++.+ ..|+-+...| +..|. ..| ..++
T Consensus 247 a~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~-~~p~gg~~~~~~l~~~--------------~~~--~~~~ 309 (361)
T d1d2fa_ 247 AHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNW-QIPQSTYLAWLDLRPL--------------NID--DNAL 309 (361)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCC-CCCSBCSEEEEECGGG--------------CCC--HHHH
T ss_pred HHHHHhhccchhhhcccccchhhHHHHHHHhhhhcccccc-cccCceeEEEEEccCC--------------CCC--HHHH
Confidence 222222334555555555555666666666554 455553 4566555444 22221 112 1467
Q ss_pred HHHHHhc-CcEEEEece--eCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 220 YDRIIAR-KVIYIVKGS--FQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 220 ~~~L~~~-G~~~vs~t~--l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
.++|.++ |.+++-... -++..++|+++. +.++++++.++.|.++.+++
T Consensus 310 ~~~Ll~~~gv~v~pG~~F~~~~~~~vRis~~---~~~e~l~~al~rl~~~l~~l 360 (361)
T d1d2fa_ 310 QKALIEQEKVAIMPGYTYGEEGRGFVRLNAG---CPRSKLEKGVAGLINAIRAV 360 (361)
T ss_dssp HHHHHHTTCEECEEGGGGCGGGTTEEEEECC---SCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEEeccccCCCCCCEEEEEEc---CCHHHHHHHHHHHHHHHHhc
Confidence 7777665 876543332 235678999875 56789999999888887765
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=96.04 E-value=0.056 Score=55.14 Aligned_cols=211 Identities=12% Similarity=0.013 Sum_probs=115.7
Q ss_pred HHHHHhhcCCCCCCeEEecCC-CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhh---c-----CCCc
Q psy13453 24 SFKATHSLSGTPDQVRLSGLP-DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPV---S-----NGPL 94 (764)
Q Consensus 24 v~KAa~~LGl~~~~v~~Vpvd-~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia---~-----~~wl 94 (764)
....+...|.+. +.||++ +++..+.+++++++.. ++-+++-+-++.++|.+=+.+++. + ++++
T Consensus 109 ~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~-----~~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~l 180 (355)
T d1lc5a_ 109 YGRALAQSGCEI---RRWSLREADGWQLTDAILEALTP-----DLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINL 180 (355)
T ss_dssp HHHHHHHTTCEE---EEEECCGGGTTCCCTTHHHHCCT-----TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEE
T ss_pred eccccccccccc---eeeeeeccCCccceeeeeecccc-----ccceeeeecccCcccccchhhhhhhhhhhcccccccc
Confidence 345566777766 899997 3333333455554443 233555566899999987755533 3 6777
Q ss_pred eecccccc--ccc-----------eeeee-cCCCccc-cccccccccCCc--------ccCCCCcccHHHHHHHHHHc-c
Q psy13453 95 KVGGVLRR--VYS-----------SCLVP-RGQKSLR-TTVLFHFLFQHW--------QIPLGRRFRALKLWMTLRSY-G 150 (764)
Q Consensus 95 HVDa~l~~--~y~-----------s~ll~-rd~~~l~-~~~s~~~d~~d~--------tle~SRr~~ALklWatL~~l-G 150 (764)
-+|-.... ... ..+.. .-.+.+. ..+...+-+... -...+=...++..+++...+ .
T Consensus 181 i~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~ 260 (355)
T d1lc5a_ 181 ILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQMPWSVNALAALAGEVALQD 260 (355)
T ss_dssp EEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHSCTTCSCHHHHHHHHHGGGC
T ss_pred ccccceeeeeeecccccccccccccceeecccccccccccccccceeccchhhhHHHHhhcCCccccccccccccccccc
Confidence 55553211 000 01111 0001000 000000000000 00011122334444444433 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEE
Q psy13453 151 LKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIY 230 (764)
Q Consensus 151 ~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~ 230 (764)
.+.+.+.+++..+..+++.+.+++.+++++. +...+-+.++.. . +. .++.++|.++|...
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-p~~~~f~~~~~~-~--------------~~----~~~~~~L~~~gv~v 320 (355)
T d1lc5a_ 261 SAWQQATWHWLREEGARFYQALCQLPLLTVY-PGRANYLLLRCE-R--------------ED----IDLQRRLLTQRILI 320 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTTEEEC-CCSSSEEEEEES-C--------------TT----CCHHHHHHTTTEEC
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhcCCcEEC-CCCCEEEEEECC-C--------------CH----HHHHHHHHHCCcEE
Confidence 5667888888888899999999999999864 444443434321 0 11 24777889999876
Q ss_pred EEeceeC--CeeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 231 IVKGSFQ--DRLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 231 vs~t~l~--g~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
...+.+. +..++|+++. ++++++++++.|+++
T Consensus 321 r~~~~f~~~~~~~iRis~~----~~~e~~~li~aL~~i 354 (355)
T d1lc5a_ 321 RSCANYPGLDSRYYRVAIR----SAAQNERLLAALRNV 354 (355)
T ss_dssp EECTTSTTCCTTEEEEECC----CHHHHHHHHHHHHHH
T ss_pred EeCccCCCCCCCEEEEEeC----CHHHHHHHHHHHHHh
Confidence 5555443 3578999874 578899999988875
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=96.01 E-value=0.085 Score=55.62 Aligned_cols=217 Identities=11% Similarity=0.024 Sum_probs=134.6
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCc-EEEEeeCCcccccccCchh---hhc--CCC
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCP-MCSGYCGRTLHQDIQSLNA---PVS--NGP 93 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p-~~VatAGTT~~G~iDpi~~---ia~--~~w 93 (764)
.|+|--.-+...|... +++..++|+++.+|.++|++.+.+. +| ++| +|.+.+.-.-|+++ |++ +..
T Consensus 124 GHlshg~~~~~~g~~~-~~~~y~~d~~~~IDyd~l~~~a~~~-----kPklIi--~G~S~y~r~~d~~~~reiad~vga~ 195 (416)
T d1dfoa_ 124 GHLTHGSPVNFSGKLY-NIVPYGIDATGHIDYADLEKQAKEH-----KPKMII--GGFSAYSGVVDWAKMREIADSIGAY 195 (416)
T ss_dssp CCGGGTCTTSHHHHHS-EEEEECBCSSSSBCHHHHHHHHHHH-----CCSEEE--EECSSCCSCCCHHHHHHHHHHTTCE
T ss_pred ccccccccccccCceE-EEEecccCCccCccHHHHHHHHHHh-----ccceEE--ecccccccccCHHHHHHHHHhcCce
Confidence 3444433344444433 2355677888999999999999885 35 333 33344444555555 444 888
Q ss_pred ceeccccc-----------------------cc-----cceeeeecCCC-ccccccccccc-cCCcccCCCCcccHH-HH
Q psy13453 94 LKVGGVLR-----------------------RV-----YSSCLVPRGQK-SLRTTVLFHFL-FQHWQIPLGRRFRAL-KL 142 (764)
Q Consensus 94 lHVDa~l~-----------------------~~-----y~s~ll~rd~~-~l~~~~s~~~d-~~d~tle~SRr~~AL-kl 142 (764)
+++|+++. |+ -+++++.++.. .+.. .+| --.++++++-....+ .+
T Consensus 196 l~~D~aH~~GLIa~g~~~sP~~~aDvvt~tThKtlrGPrggiI~~~~~~~~~~~----~i~~avfPg~qggp~~~~iaa~ 271 (416)
T d1dfoa_ 196 LFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKGGSEELYK----KLNSAVFPGGQGGPLMHVIAGK 271 (416)
T ss_dssp EEEECTTTHHHHHHTSSCCCTTTSSEEEEESSSTTCCCSCEEEEESSCCHHHHH----HHHHHHTTTTCSSCCHHHHHHH
T ss_pred EEcchhhhhcceeccccCCcccccceeeeehhhcccCCCceEEEeccchHhHHH----HHHhhhCcccccCccHHHHHHH
Confidence 99999641 11 13455554321 1100 111 224688888865555 44
Q ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeC-CCCceeEEEEeeccccccccccccCccCCccHHH-HHHH
Q psy13453 143 WMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVC-PPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLN-KAVY 220 (764)
Q Consensus 143 WatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~-~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n-~~L~ 220 (764)
-.+++..-...|++..++.+++|+.|++.|.+. +|.++. -.+..+|.....+.+ ++ .+..
T Consensus 272 Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~-G~~iv~ggTdnHlvlvdl~~~~-----------------~~G~~a~ 333 (416)
T d1dfoa_ 272 AVALKEAMEPEFKTYQQQVAKNAKAMVEVFLER-GYKVVSGGTDNHLFLVDLVDKN-----------------LTGKEAD 333 (416)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGT-----------------CCHHHHH
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhC-CcccccCCCCCceeEEEecccC-----------------CCHHHHH
Confidence 666777778899999999999999999999985 999985 356667777554322 22 4555
Q ss_pred HHHHhcCcEEEEeceeCC-------eeEEEEecc---CCCCCHHHHHHHHHHHHHHH
Q psy13453 221 DRIIARKVIYIVKGSFQD-------RLFMRFAIC---SSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 221 ~~L~~~G~~~vs~t~l~g-------~~~LRi~v~---np~Tt~e~i~~~l~~l~~~~ 267 (764)
+.|.+.|. .++.+.+-+ +..||+-.- .--..+++++++-+.|.++.
T Consensus 334 ~~Le~~gI-~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l 389 (416)
T d1dfoa_ 334 AALGRANI-TVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVL 389 (416)
T ss_dssp HHHHHTTE-ECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCe-EEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 66666665 455555532 468998431 22235577777777776654
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=95.85 E-value=0.066 Score=56.42 Aligned_cols=76 Identities=11% Similarity=-0.091 Sum_probs=54.6
Q ss_pred e-eHHHHHhhc-CCCCCCeEEecCC--CCCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccCchh---hhc---
Q psy13453 22 Y-ESFKATHSL-SGTPDQVRLSGLP--DSEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQSLNA---PVS--- 90 (764)
Q Consensus 22 Y-Sv~KAa~~L-Gl~~~~v~~Vpvd--~~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDpi~~---ia~--- 90 (764)
| +....+.+. |+.. +.|+++ +++.+|+++++++++.....+..+-+ +-+-++-++|.+=+.++ +++
T Consensus 142 y~~~~~~~~~~~g~~~---v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~ 218 (428)
T d1iaya_ 142 YPAFNRDLRWRTGVQL---IPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTN 218 (428)
T ss_dssp CTTHHHHTTTTTCCEE---EEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcCCeE---EEeecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeec
Confidence 5 445555544 5554 888887 46799999999999887776665544 67788899998866444 433
Q ss_pred --CCCceecccc
Q psy13453 91 --NGPLKVGGVL 100 (764)
Q Consensus 91 --~~wlHVDa~l 100 (764)
++|+.+|.+.
T Consensus 219 ~~~~~vI~De~Y 230 (428)
T d1iaya_ 219 QHNIHLVCDEIY 230 (428)
T ss_dssp TTTCEEEEECTT
T ss_pred cCcEEEEecccc
Confidence 8899888853
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.85 E-value=0.12 Score=55.33 Aligned_cols=159 Identities=9% Similarity=-0.086 Sum_probs=89.9
Q ss_pred cEEEeCChHHHHHHHHHHHHHHHhhhhccCCCC----------CccccccCc-eEEEecCCcchhHHHHHHhCCCc----
Q psy13453 590 GGIIQSTASEATLVSILVAKRKMINHWQSKNPS----------LTENDIRNK-LVAYTSDQSNSSVEKSAIIGDVP---- 654 (764)
Q Consensus 590 ~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~----------~~~~~~~~~-~vi~~S~~aH~Sv~kAa~~lGl~---- 654 (764)
..+|+.+|||||-.|+++||.....+...+... ... ...++ .+|-....-|=...-+..+.|-.
T Consensus 119 ~v~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~ 197 (461)
T d1ohwa_ 119 QLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQA-PGCPDYSILSFMGAFHGRTMGCLATTHSKAIHK 197 (461)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCT-TTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHH
T ss_pred eeeeecchhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccc-cCCCCceEEEecCCcCCCCcccccccCCccccc
Confidence 468999999999999999997654331111000 000 01122 24445566665555555544321
Q ss_pred -------eEEEecC-CC-------------CcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccc----cHHHHHHH
Q psy13453 655 -------VRQLRSD-DN-------------GVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFD----NLEELGPI 709 (764)
Q Consensus 655 -------v~~Vp~d-~~-------------g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiD----pl~eIa~i 709 (764)
-...|.. .. ...+.+++++.+......+..+.+|+.---....|.+- =+++|+++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~l 277 (461)
T d1ohwa_ 198 IDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDI 277 (461)
T ss_dssp TTCCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHH
T ss_pred ccccccCCcccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHH
Confidence 1111211 00 12345677777766555555565666544444445443 28999999
Q ss_pred HHhcCCEEEEeccccccccccchhhhhhcCCC-cccEEEEc
Q psy13453 710 CQEYNIWLHVDAAYAGSALLLPEYAHLKRGLE-YVDSFDFN 749 (764)
Q Consensus 710 ~~~~glwLHVDaA~Gg~~l~~~~~r~~l~gie-~aDSit~d 749 (764)
|++||+.|++|-.+.|+-..-.-+.+..-|++ ..|-+++.
T Consensus 278 c~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv~~g 318 (461)
T d1ohwa_ 278 SRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFS 318 (461)
T ss_dssp HHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSSCCSEEEEC
T ss_pred HHhhCcceeccccccccccccccccccccccccCchhhhhh
Confidence 99999999999998775432222222233554 46878765
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=95.77 E-value=0.017 Score=59.48 Aligned_cols=212 Identities=14% Similarity=0.090 Sum_probs=112.9
Q ss_pred eeeHHHHHhhcCCCCCCeEEecCC---CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccC---chhhhc----
Q psy13453 21 IYESFKATHSLSGTPDQVRLSGLP---DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQS---LNAPVS---- 90 (764)
Q Consensus 21 ~YSv~KAa~~LGl~~~~v~~Vpvd---~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDp---i~~ia~---- 90 (764)
+.+....++.+|.+. +.++++ +.+.+|+++|++++++.. .+++-+-++-++|.+=+ ++++++
T Consensus 112 ~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~d~~~l~~~~~~~~-----~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~ 183 (368)
T d1v2da_ 112 FDVYLPDAFLAGAKA---RLVRLDLTPEGFRLDLSALEKALTPRT-----RALLLNTPMNPTGLVFGERELEAIARLARA 183 (368)
T ss_dssp CTTHHHHHHHTTCEE---EEEECEEETTEEECCHHHHHTTCCTTE-----EEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred chhhhhHHHhcCCcc---ceeccccccccccCCHHHHHHhhccCc-----eEEEEcCCCCcccccCCHHHHHHHHHHHHH
Confidence 345667788888877 888875 457899999999987642 24455667889999865 555544
Q ss_pred -CCCceecccccccc----c----------eeeeec-CCCcccccccccc-----c-------c-CCcccCCCCcccHHH
Q psy13453 91 -NGPLKVGGVLRRVY----S----------SCLVPR-GQKSLRTTVLFHF-----L-------F-QHWQIPLGRRFRALK 141 (764)
Q Consensus 91 -~~wlHVDa~l~~~y----~----------s~ll~r-d~~~l~~~~s~~~-----d-------~-~d~tle~SRr~~ALk 141 (764)
++|+++|......+ . ..++.. .+......+...+ + . ..++...+.... ..
T Consensus 184 ~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~G~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q-~~ 262 (368)
T d1v2da_ 184 HDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQ-AG 262 (368)
T ss_dssp TTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHHHHHHHHHTSSCCHHHH-HH
T ss_pred cCCeeeechhhhhhcccccccccccccccccceeecccccccccccccccccccccccchhhhhhhccccccccccc-cc
Confidence 99999998532110 0 001000 0000000000000 0 0 001111111110 01
Q ss_pred HHHHHHHccHH-HHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHH
Q psy13453 142 LWMTLRSYGLK-GLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVY 220 (764)
Q Consensus 142 lWatL~~lG~e-Gy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~ 220 (764)
+-..+.....+ -+.++.+..-+..+++.+.+++. ++++..+.....+.+++ | +.+ ..
T Consensus 263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~p~g~~~~~~~l-~---------------~~~-----~~ 320 (368)
T d1v2da_ 263 VAEALKLARREGFYEALREGYRRRRDLLAGGLRAM-GLRVYVPEGTYFLMAEL-P---------------GWD-----AF 320 (368)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-TCCEECCSBSSEEEEEC-T---------------TCC-----HH
T ss_pred cccccccccchhhHHHHHHHHHHhhhhhhhhHHhc-CcEEecCCceeEEEEeC-C---------------ccH-----HH
Confidence 11112211122 24444445566677889999886 88865443233333332 1 111 12
Q ss_pred HHHHhcCcEEEEecee----CCeeEEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13453 221 DRIIARKVIYIVKGSF----QDRLFMRFAICSSQTEESDVQLGWNEIRTA 266 (764)
Q Consensus 221 ~~L~~~G~~~vs~t~l----~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~ 266 (764)
+.|.+.|.+....+.+ .+..++|++++ ++++++++.++.|.++
T Consensus 321 ~ll~~~gI~v~pg~~F~~~~~~~~~iRis~~---~~~e~i~~ai~rL~~~ 367 (368)
T d1v2da_ 321 RLVEEARVALIPASAFYLEDPPKDLFRFAFC---KTEEELHLALERLGRV 367 (368)
T ss_dssp HHHHHTCEECEEGGGGCSSSCCTTEEEEECC---SCHHHHHHHHHHHHHH
T ss_pred HHHHhCCEEEEechhhCCCCCCCCEEEEEec---CCHHHHHHHHHHHHHh
Confidence 3466788765543332 24578999876 3578899999888764
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=95.48 E-value=0.47 Score=49.56 Aligned_cols=74 Identities=9% Similarity=-0.171 Sum_probs=54.2
Q ss_pred eHHHHHhhc-CCCCCCeEEecCCC--CCcccHHHHHHHHHHHhhCCCCcEE-EEeeCCcccccccCchh---hhc-----
Q psy13453 23 ESFKATHSL-SGTPDQVRLSGLPD--SEWLAYLTLRTIYESFRKSFLCPMC-SGYCGRTLHQDIQSLNA---PVS----- 90 (764)
Q Consensus 23 Sv~KAa~~L-Gl~~~~v~~Vpvd~--~~rmD~~aLe~~I~~~~~~G~~p~~-VatAGTT~~G~iDpi~~---ia~----- 90 (764)
+....+.+. |+.. +.|++++ .+.+|++++++++++..+.+..+.+ +-+-++-++|.+=+-++ +.+
T Consensus 145 ~~~~~~~~~~g~~~---v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~ 221 (431)
T d1m7ya_ 145 GFDRDLKWRTGVEI---VPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDK 221 (431)
T ss_dssp THHHHTTTTTCCEE---EEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcCcee---ccccccchhcccccHHHhhhhhhhhhhccCcceEEEecCcccccccccccccccccccccccc
Confidence 456666653 4544 7788874 5789999999999998888776655 57888999998855444 443
Q ss_pred CCCceeccc
Q psy13453 91 NGPLKVGGV 99 (764)
Q Consensus 91 ~~wlHVDa~ 99 (764)
++++-+|.+
T Consensus 222 ~~~vI~De~ 230 (431)
T d1m7ya_ 222 GIHLISDEI 230 (431)
T ss_dssp TCEEEEECT
T ss_pred Ccceeeccc
Confidence 788888874
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=95.47 E-value=0.12 Score=53.98 Aligned_cols=231 Identities=13% Similarity=0.084 Sum_probs=118.8
Q ss_pred eeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCC---cEE-EEeeCCcccccccCchh---hhc----
Q psy13453 22 YESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLC---PMC-SGYCGRTLHQDIQSLNA---PVS---- 90 (764)
Q Consensus 22 YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~---p~~-VatAGTT~~G~iDpi~~---ia~---- 90 (764)
.+...+++..|... +.+|+++. .+|++.++..+.+....... ..+ +-+-+.-++|.+=+.++ +++
T Consensus 139 ~~~~~~~~~~g~~~---~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~ 214 (420)
T d1vp4a_ 139 LGAINAFRQYLANF---VVVPLEDD-GMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEK 214 (420)
T ss_dssp HHHHHHHHTTTCEE---EEEEEETT-EECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHhhhc---cccccccc-ccccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhc
Confidence 34556677888766 89998864 58999999988765444321 223 46677889999855544 333
Q ss_pred -CCCceeccccccc-c-----ce---------eeee-cCCCccccccccccccCCc---------ccCCCCcccHHHHHH
Q psy13453 91 -NGPLKVGGVLRRV-Y-----SS---------CLVP-RGQKSLRTTVLFHFLFQHW---------QIPLGRRFRALKLWM 144 (764)
Q Consensus 91 -~~wlHVDa~l~~~-y-----~s---------~ll~-rd~~~l~~~~s~~~d~~d~---------tle~SRr~~ALklWa 144 (764)
++|+-+|.+.... | .+ .++. .-++.....+...+-..+. .-..+.....+..++
T Consensus 215 ~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~s~sk~~~~G~RiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~~ 294 (420)
T d1vp4a_ 215 YDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLAPGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRL 294 (420)
T ss_dssp TTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTCGGGCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred ccccccccchhhhccccCcccccccccccccceeEEeccccccccccccccccccchhhhhhhhhhhhccccCchhhhhh
Confidence 7777777643111 1 00 1111 0111110001110000000 000001111111111
Q ss_pred HHHHcc----HHHHHHHHHH----HHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHH
Q psy13453 145 TLRSYG----LKGLQAYLRK----HISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLN 216 (764)
Q Consensus 145 tL~~lG----~eGy~~~i~~----~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n 216 (764)
+...+. .+-+++.++. .-.+.+.+.+.+.+.+++++ .+|+-+..+|--.|++. +.
T Consensus 295 ~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g~~~-~~p~gg~f~~~~~~~~~------------d~---- 357 (420)
T d1vp4a_ 295 AARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKW-VKSEGGLFIWLTLPEGF------------DT---- 357 (420)
T ss_dssp HHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEE-CCCSBSSEEEEECCTTC------------CT----
T ss_pred hhhhcccccccccchhHHHHhhhhcccchhhhhhhhccCCCcEE-ecCCceEEEEEECCCCC------------CH----
Confidence 111111 1112222222 22333445555566788987 56666655542222211 11
Q ss_pred HHHHHHHHhcCcEEEEecee----CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHccCC
Q psy13453 217 KAVYDRIIARKVIYIVKGSF----QDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLRGKS 275 (764)
Q Consensus 217 ~~L~~~L~~~G~~~vs~t~l----~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~~~~ 275 (764)
.++.+.|.+.|.++.-.+.+ ++..++|++++. .+++++++.++.|+++.++..+++.
T Consensus 358 ~~~~~~l~~~gV~v~PG~~F~~~~~~~~~iRls~~~--~~~e~l~~a~~rL~~~l~~~~~~~~ 418 (420)
T d1vp4a_ 358 WEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCL--PPDEKIVEGIKRLREVVLEYGKEKH 418 (420)
T ss_dssp TTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSS--SCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCeEEEechhhCCCCCCCCEEEEEeCc--CCHHHHHHHHHHHHHHHHHhhHhhC
Confidence 23556777889866544433 235689999864 3568899999999999888877654
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.45 E-value=0.1 Score=54.73 Aligned_cols=223 Identities=12% Similarity=0.041 Sum_probs=128.4
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCC-CCCcccHHHHHHHHHHHhhCCCCcEE-E--EeeCCcccccccCchhhhc--CCC
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLP-DSEWLAYLTLRTIYESFRKSFLCPMC-S--GYCGRTLHQDIQSLNAPVS--NGP 93 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd-~~~rmD~~aLe~~I~~~~~~G~~p~~-V--atAGTT~~G~iDpi~~ia~--~~w 93 (764)
.|+|--+-....|... +++.-|+| +++.+|.+++++.+++. +|=+ | +|+ ..-.=-+.-+.+|++ +.+
T Consensus 121 GHlshg~~~~~~g~~~-~~~~y~~d~~~~~ID~d~l~~~a~~~-----kPklIi~G~S~-y~r~~d~~~~reIad~vga~ 193 (405)
T d1kl1a_ 121 GHLTHGSPVNFSGVQY-NFVAYGVDPETHVIDYDDVREKARLH-----RPKLIVAAASA-YPRIIDFAKFREIADEVGAY 193 (405)
T ss_dssp CCGGGTCTTSHHHHHS-EEEEECBCTTTCSBCHHHHHHHHHHH-----CCSEEEECCSS-CCSCCCHHHHHHHHHHHTCE
T ss_pred cccccCccccccceEE-EEEEeccchhcccccHHHHHHHHHhh-----CcceEEecccc-cccccChHHHHHHHhhhCCE
Confidence 3444333333334433 23556898 67899999999999985 3544 3 222 111112234445565 888
Q ss_pred ceecccccc------------ccceeeeecCCCccccc----------cccccc-cCCcccCCCCcccHH-HHHHHHHHc
Q psy13453 94 LKVGGVLRR------------VYSSCLVPRGQKSLRTT----------VLFHFL-FQHWQIPLGRRFRAL-KLWMTLRSY 149 (764)
Q Consensus 94 lHVDa~l~~------------~y~s~ll~rd~~~l~~~----------~s~~~d-~~d~tle~SRr~~AL-klWatL~~l 149 (764)
+++|+.+.. .|+-++.....++|++- +....+ ---+++|++=....+ .+-.+++..
T Consensus 194 l~~D~aH~~GLIa~g~~~~P~~~aDvvt~tThKtlrGPrgg~I~~~~~~~~~i~~avfPg~qggp~~~~iAa~Aval~Ea 273 (405)
T d1kl1a_ 194 LMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILCQEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEA 273 (405)
T ss_dssp EEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSCEEEEECHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH
T ss_pred EecchhhHhhhhhhhhcCChhhhhhheeccccccccCCCCceEEecchhHHHHHhhhCcccccCcchhHHHHHHHHHHHH
Confidence 999996411 12222222222222221 000111 123577777655555 345556666
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCC-CCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCc
Q psy13453 150 GLKGLQAYLRKHISLAKKFADLVEQDDRFELVCP-PSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKV 228 (764)
Q Consensus 150 G~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~-P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~ 228 (764)
-...|++..++.+++|+.|++.+.+ .||.++.. .+..+|.....+.+. + -.+..+.|.+.|.
T Consensus 274 ~~~~fk~Ya~qvv~NAkaLa~~L~~-~G~~vv~ggTd~H~vlvdl~~~~~--------------~--g~~ae~~Le~agI 336 (405)
T d1kl1a_ 274 LQDDFKAYAKRVVDNAKRLASALQN-EGFTLVSGGTDNHLLLVDLRPQQL--------------T--GKTAEKVLDEVGI 336 (405)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHHHH-TTCEEGGGSCSSSEEEEECGGGTC--------------C--HHHHHHHHHHHTE
T ss_pred hChHHHHHHHHHHHHHHHHHHHHhc-CCceeecCCCccceeeccccccCC--------------c--HHHHHHHHHHcCe
Confidence 6788999999999999999999998 59999854 566677775543221 1 1334455666664
Q ss_pred EEEEeceeCC-------eeEEEEec---cCCCCCHHHHHHHHHHHHHHH
Q psy13453 229 IYIVKGSFQD-------RLFMRFAI---CSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 229 ~~vs~t~l~g-------~~~LRi~v---~np~Tt~e~i~~~l~~l~~~~ 267 (764)
.++.+.+.+ +..||+-. +.--..++++.++-+.|.++.
T Consensus 337 -~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l 384 (405)
T d1kl1a_ 337 -TVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVL 384 (405)
T ss_dssp -ECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred -EEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 566665543 36899843 222245678777777776654
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=95.37 E-value=0.043 Score=56.26 Aligned_cols=224 Identities=10% Similarity=0.023 Sum_probs=122.8
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCC-CCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCC
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPD-SEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGP 93 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~-~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~w 93 (764)
.|-|+.-|....|..+ +.+.++. ++.||++.|+++|++.++ .+| .+-.+|..=|++++.+ +++
T Consensus 80 ~~~~~~~ai~~~g~~p---v~~d~~~~~~~~d~~~l~~~i~~~tk-----aIi---~~h~~G~~~~~~~i~~i~~~~~i~ 148 (376)
T d1mdoa_ 80 TWVSTLNMIVLLGANP---VMVDVDRDTLMVTPEHIEAAITPQTK-----AII---PVHYAGAPADLDAIYALGERYGIP 148 (376)
T ss_dssp SCHHHHHHHHHTTCEE---EEECBCTTTCCBCHHHHHHHCCTTEE-----EEC---CBCGGGCCCCHHHHHHHHHHHTCC
T ss_pred cccccccchhccccce---eeecccccccCCCHHHHHHhcCCCCe-----EEE---EeCCCCCccchhHHHHHHHhcCce
Confidence 5677888888999888 8888984 689999999999986432 222 3456777767777654 899
Q ss_pred ceeccccccc--c-------------------------ceeeeecCCCccccc--ccc-cc---------c--c--CCcc
Q psy13453 94 LKVGGVLRRV--Y-------------------------SSCLVPRGQKSLRTT--VLF-HF---------L--F--QHWQ 130 (764)
Q Consensus 94 lHVDa~l~~~--y-------------------------~s~ll~rd~~~l~~~--~s~-~~---------d--~--~d~t 130 (764)
+-.|++.... | +++++..+....... +.. .. . . .++.
T Consensus 149 vIeD~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l~~g~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 228 (376)
T d1mdoa_ 149 VIEDAAHATGTSYKGRHIGARGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVL 228 (376)
T ss_dssp BCEECTTCTTCEETTEETTSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEES
T ss_pred EEeccchhccCeeCCeecccccCccccCCCcCCCCCCCCCEEEEechhHHHHHHhhcccCCcccccccccccccccccch
Confidence 9999974111 1 123333332211100 000 00 0 0 0011
Q ss_pred cCCC-CcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCcc
Q psy13453 131 IPLG-RRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTIS 209 (764)
Q Consensus 131 le~S-Rr~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~ 209 (764)
..+. -+..-+.. ++-....+.+.+.+++..+.++++.+.+++.+...+...+.-..-.|...+.....
T Consensus 229 ~~g~n~~~~~~~A--ai~~~qL~~~~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 297 (376)
T d1mdoa_ 229 APGYKYNLPDLNA--AIALAQLQKLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDE--------- 297 (376)
T ss_dssp SCCCBCCCCHHHH--HHHHHHHHTHHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCH---------
T ss_pred hcccccccchhhh--hhhhhhhhhhhHHHHHHhhhhhhhhhhccccccccccccccccccccccccccccc---------
Confidence 1111 13333322 22222245677889999999999999999987766544332221111111000000
Q ss_pred CCccHHH-HHHHHHHHhcCcEEE-Eecee-----------CC---------eeEEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13453 210 FGDNDLN-KAVYDRIIARKVIYI-VKGSF-----------QD---------RLFMRFAICSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 210 ~~~d~~n-~~L~~~L~~~G~~~v-s~t~l-----------~g---------~~~LRi~v~np~Tt~e~i~~~l~~l~~~~ 267 (764)
.....+ .++.+.|.+.|...- ....+ .+ ...+.+ =++|..+.++++.+++.|+++.
T Consensus 298 -~~~~~~Rd~l~~~L~~~gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~L-P~~~~lt~~ei~~I~~~i~~i~ 375 (376)
T d1mdoa_ 298 -ARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSL-PLFPDMTESDFDRVITALHQIA 375 (376)
T ss_dssp -HHHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEE-CCCTTCCHHHHHHHHHHHHHHH
T ss_pred -ccchhhHHHHHHHHHHCCCCeeeECcchhcCHHHHhhCCCCCCHHHHHHHhCEEEc-cCCCCCCHHHHHHHHHHHHHHh
Confidence 000011 368888888885210 00001 00 233554 2688889999999999998863
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.36 E-value=0.022 Score=58.95 Aligned_cols=69 Identities=12% Similarity=-0.102 Sum_probs=50.8
Q ss_pred eHHHHHhhcCCCCCCeEEecCC--CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCccccccc---Cchhhhc-----CC
Q psy13453 23 ESFKATHSLSGTPDQVRLSGLP--DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQ---SLNAPVS-----NG 92 (764)
Q Consensus 23 Sv~KAa~~LGl~~~~v~~Vpvd--~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iD---pi~~ia~-----~~ 92 (764)
....+++.+|... +.+|++ +++++|+++|++++++. +-+++-+-++-++|.+= .+.++++ ++
T Consensus 122 ~~~~~~~~~g~~~---~~~~~~~~~~~~~d~~~l~~~~~~~-----~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~ 193 (388)
T d1gdea_ 122 SYAPAVILAGGKP---VEVPTYEEDEFRLNVDELKKYVTDK-----TRALIINSPCNPTGAVLTKKDLEEIADFVVEHDL 193 (388)
T ss_dssp THHHHHHHHTCEE---EEEECCGGGTTCCCHHHHHHHCCTT-----EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCEE---EEeecccccCCCCCHHHHHHhCccC-----CeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCC
Confidence 4678899999877 999997 46799999999988653 22445556788999994 4555543 77
Q ss_pred Cceeccc
Q psy13453 93 PLKVGGV 99 (764)
Q Consensus 93 wlHVDa~ 99 (764)
++-+|.+
T Consensus 194 ~vi~De~ 200 (388)
T d1gdea_ 194 IVISDEV 200 (388)
T ss_dssp EEEEECT
T ss_pred EEEEEcC
Confidence 8777765
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=95.36 E-value=0.071 Score=57.09 Aligned_cols=53 Identities=6% Similarity=-0.092 Sum_probs=34.5
Q ss_pred CCcccHHHHHHHHHHHhhCCCCcEEE-EeeCCccccc---ccCchhhhc-----CCCceeccc
Q psy13453 46 SEWLAYLTLRTIYESFRKSFLCPMCS-GYCGRTLHQD---IQSLNAPVS-----NGPLKVGGV 99 (764)
Q Consensus 46 ~~rmD~~aLe~~I~~~~~~G~~p~~V-atAGTT~~G~---iDpi~~ia~-----~~wlHVDa~ 99 (764)
.+.+|+++|+++|++.... .+++++ -+.-+..-|. +++|.++++ ++.+|+|++
T Consensus 155 ~~~~d~~~le~~I~~~~~~-~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a 216 (456)
T d1c7ga_ 155 KGDIDLNKLATLIKEKGAE-NIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDAT 216 (456)
T ss_dssp TTCBCHHHHHHHHHHHCGG-GEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECT
T ss_pred cccCCHHHHHHHhhhcCCc-cceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcc
Confidence 5789999999999986542 334443 3322333343 356665554 999999996
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=95.25 E-value=0.027 Score=57.69 Aligned_cols=213 Identities=10% Similarity=-0.029 Sum_probs=108.5
Q ss_pred HHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCceecc
Q psy13453 24 SFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKVGG 98 (764)
Q Consensus 24 v~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHVDa 98 (764)
+.+.+...|... ..++.+....++++.+++.+..+ ++... ++.||.+-|+.++.+ +..++|||
T Consensus 106 ~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~------~~~~v---~~~tg~~~~~~~i~~~~~~~~al~~vDa 173 (361)
T d2c0ra1 106 ALKEAKLIGDTH---VAASSEASNYMTLPKLQEIQLQD------NAAYL---HLTSNETIEGAQFKAFPDTGSVPLIGDM 173 (361)
T ss_dssp HHHHHHHHSCEE---EEEECGGGTTCSCCCGGGCCCCT------TEEEE---EEESEETTTTEECSSCCCCTTSCEEEEC
T ss_pred hhhhhhhcCcee---eeeccccccccchhhhhhhcccC------cceEE---EEecccceecceEEEeeccCCceEEEEe
Confidence 456777788766 88888877888888888766543 34322 234566666666554 88889999
Q ss_pred cc------------------ccc----cc--eeeeecCC-CccccccccccccCCcccCCCC--cccHH----HHHHHHH
Q psy13453 99 VL------------------RRV----YS--SCLVPRGQ-KSLRTTVLFHFLFQHWQIPLGR--RFRAL----KLWMTLR 147 (764)
Q Consensus 99 ~l------------------~~~----y~--s~ll~rd~-~~l~~~~s~~~d~~d~tle~SR--r~~AL----klWatL~ 147 (764)
.- .++ .+ ++++.... ...........+|..+.....+ ..... ..-+...
T Consensus 174 vss~g~~~id~~~~di~~~s~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (361)
T d2c0ra1 174 SSDILSRPFDLNQFGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKW 253 (361)
T ss_dssp TTTTTSSCCCGGGCSEEEEETTTTTCCSSCEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHH
T ss_pred eccccccccccccceeEEEecccccccccCcEEEEEhHHhhhCccccccccccccccccccccccccceeeehhhhHHHh
Confidence 31 111 11 12222111 1111111111111111111111 11111 1111111
Q ss_pred HccHHHHHHHHHHHHHHHHHHHHHHhcCCC-eEEeCCC---CceeEEEEeeccccccccccccCccCCccHHHHHHHHHH
Q psy13453 148 SYGLKGLQAYLRKHISLAKKFADLVEQDDR-FELVCPP---SMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRI 223 (764)
Q Consensus 148 ~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~-~ell~~P---~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L 223 (764)
..-.++.....++.-..+..+.+....... ......+ ...++||++.+ + .-...+.+.|
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~~~~~~~~~-~----------------~~~~~~~~~L 316 (361)
T d2c0ra1 254 IEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLAS-E----------------ELEKEFVKAS 316 (361)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSC-H----------------HHHHHHHHHH
T ss_pred hhhccchHHHHHHHHHHHHHhhhhhhhcccccccCCChhhccceEEEEECCC-c----------------ccHHHHHHHH
Confidence 222333334444444445555555555433 3334433 24678998741 1 1125788888
Q ss_pred HhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13453 224 IARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATE 268 (764)
Q Consensus 224 ~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~ 268 (764)
.+.|....+. ......+|+.+ ++.++.|||+.+++.|++..+
T Consensus 317 ~~~GI~~~~G--~~~~g~~RIs~-~~~~~~edv~~Lv~~l~~~~~ 358 (361)
T d2c0ra1 317 EQEGFVGLKG--HRSVGGLRASI-YNAVPYESCEALVQFMEHFKR 358 (361)
T ss_dssp HHTTEESCBC--CTTTCSEEEEC-CTTSCHHHHHHHHHHHHHHHH
T ss_pred HHCCCEEecC--CCcCCeEEEEe-cCCCCHHHHHHHHHHHHHHHH
Confidence 8899743332 22112389974 566789999999999998754
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=95.23 E-value=0.28 Score=50.66 Aligned_cols=218 Identities=12% Similarity=0.030 Sum_probs=129.5
Q ss_pred eeeHHHHHhhcCCCCCCeEEecCC-CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCc
Q psy13453 21 IYESFKATHSLSGTPDQVRLSGLP-DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPL 94 (764)
Q Consensus 21 ~YSv~KAa~~LGl~~~~v~~Vpvd-~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wl 94 (764)
+.++.-|+...|..+ +.+.++ .++.||++.+++.+...++ +...+..+|..-+++++.+ ++.+
T Consensus 84 ~~a~~~ai~~~g~~p---~~~d~~~~~~~~d~~~~~~~i~~~tk--------~i~~~~~~g~~~d~~~i~~~~~~~~i~l 152 (384)
T d1b9ha_ 84 FISSSQAAQRLGAVT---VPVDVDAATYNLDPEAVAAAVTPRTK--------VIMPVHMAGLMADMDALAKISADTGVPL 152 (384)
T ss_dssp CTHHHHHHHHTTCEE---EEECBCTTTCCBCHHHHHHHCCTTEE--------EECCBCGGGCCCCHHHHHHHHHHHTCCB
T ss_pred ccccccccccccccc---ccccccccccccchhhhccccccccc--------ccccccccccccccccchhhhhhhhhhh
Confidence 456777888888877 888887 4789999999998876432 2355677777777777654 7888
Q ss_pred eeccccc---------------------c-------ccceeeeecCCCccccc--cccc-----ccc--CCcccCCCC-c
Q psy13453 95 KVGGVLR---------------------R-------VYSSCLVPRGQKSLRTT--VLFH-----FLF--QHWQIPLGR-R 136 (764)
Q Consensus 95 HVDa~l~---------------------~-------~y~s~ll~rd~~~l~~~--~s~~-----~d~--~d~tle~SR-r 136 (764)
..|++.. + ..+++++..+++..... +..+ .+. ..+...|.. |
T Consensus 153 ieD~a~a~ga~~~g~~~g~~g~~~~~Sf~~~K~i~~g~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~r 232 (384)
T d1b9ha_ 153 LQDAAHAHGARWQGKRVGELDSIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMR 232 (384)
T ss_dssp CEECTTCTTCEETTEEGGGSSSCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCB
T ss_pred hhhhceecccccCCEecCcccccceecccccccccccccchhhhhhHHHHHHHHHHHhcCCCCccccccccccccccccc
Confidence 8887530 0 01245555554432211 0000 000 112333333 4
Q ss_pred ccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCce------eEEEEeeccccccccccccCccC
Q psy13453 137 FRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMG------LVCFRLKVRFWDKLDNLFGTISF 210 (764)
Q Consensus 137 ~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~------iV~Fry~P~~~~~~~~~~~~~~~ 210 (764)
...+..-..+.. .+.+.+.+++..++++++.+.+++.+++.....+.-. ...|+..
T Consensus 233 ms~l~Aaig~~q--L~~ld~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~---------------- 294 (384)
T d1b9ha_ 233 LNEFSASVLRAQ--LARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIP---------------- 294 (384)
T ss_dssp CBHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECT----------------
T ss_pred cccchhhhhhhh--hhhcccchhhhhhhhhhhhhhhhcccccccccccccccccccccccceec----------------
Confidence 555543322222 3457888899999999999999999998765543322 2333321
Q ss_pred CccHHH-HHHHHHHHhcCcE-EEEeceeC----------------------------CeeEEEEeccCCCCC-HHHHHHH
Q psy13453 211 GDNDLN-KAVYDRIIARKVI-YIVKGSFQ----------------------------DRLFMRFAICSSQTE-ESDVQLG 259 (764)
Q Consensus 211 ~~d~~n-~~L~~~L~~~G~~-~vs~t~l~----------------------------g~~~LRi~v~np~Tt-~e~i~~~ 259 (764)
..+..+ ..+.+.|.+.|.- .+....++ ....+.+ -+++..+ +++++.+
T Consensus 295 ~~~~~~Rd~l~~~L~~~GI~~~~~y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~L-P~~~~Lt~e~ei~~I 373 (384)
T d1b9ha_ 295 GLTEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWL-HHRVLLAGEPELHAT 373 (384)
T ss_dssp TCCHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEE-EGGGGGSCHHHHHHH
T ss_pred ccccccHHHHHHHHHHCCCCeeeeCcchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEc-cCCCCCCCHHHHHHH
Confidence 122223 3688999999962 22222111 0134555 3566665 6899999
Q ss_pred HHHHHHHHH
Q psy13453 260 WNEIRTATE 268 (764)
Q Consensus 260 l~~l~~~~~ 268 (764)
.+.|+++.+
T Consensus 374 ~~~i~~~l~ 382 (384)
T d1b9ha_ 374 AEIIADAVA 382 (384)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988764
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=95.16 E-value=0.15 Score=52.38 Aligned_cols=215 Identities=10% Similarity=-0.029 Sum_probs=114.9
Q ss_pred eHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-------CCCce
Q psy13453 23 ESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-------NGPLK 95 (764)
Q Consensus 23 Sv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-------~~wlH 95 (764)
.+.+-|.-+|... ..+..+.....+++.. +......++.+-..|.+|.+-|++++++ ..+++
T Consensus 88 ~~~~~a~~~~~~~---~~~~~~~g~~~~~~~~--------~~~~~~~v~~~h~eTstG~~~~i~~i~~~~~~~~~~~l~~ 156 (348)
T d1iuga_ 88 RFYEIALEAGLVV---ERLDYPYGDTPRPEDV--------AKEGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVG 156 (348)
T ss_dssp HHHHHHHHTTCEE---EEEECCTTCCCCTTTS--------CCSSCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEE
T ss_pred HHHHHHHhcCccc---ccccccCCCccccccc--------cccCCCeeEEEecchhhhhhccHHHHHHHHHhhhccceee
Confidence 3445555666543 5555543333443322 1223334567888999999999999875 45678
Q ss_pred ecccc--------------------ccc-----cc-eeeeecCCCcccc----cccccc-ccCCcccCC----CCcccHH
Q psy13453 96 VGGVL--------------------RRV-----YS-SCLVPRGQKSLRT----TVLFHF-LFQHWQIPL----GRRFRAL 140 (764)
Q Consensus 96 VDa~l--------------------~~~-----y~-s~ll~rd~~~l~~----~~s~~~-d~~d~tle~----SRr~~AL 140 (764)
||+.- .|+ -+ ++++++.+. +.. .+..++ .+.++.-.+ +-....+
T Consensus 157 vDavss~g~~~i~~d~~~iD~~~~~sqK~l~gppG~~~v~~s~~~-le~~~~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i 235 (348)
T d1iuga_ 157 ADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRA-LERLKPRGYYLDLARELKAQKEGESAWTPAINLV 235 (348)
T ss_dssp EECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHH-HHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHH
T ss_pred chhhhcccccccccccccCCEEEeccccceecCCceeeeeechHH-HhhhcccccccchhhhhhhhccCcccccccchHH
Confidence 88831 122 11 455555321 111 111110 000011111 1122223
Q ss_pred -HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC-ceeEEEEeeccccccccccccCccCCccHHHHH
Q psy13453 141 -KLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS-MGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKA 218 (764)
Q Consensus 141 -klWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~-l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~ 218 (764)
.+-.+|+.+-.+| .+.++..-...+.+++.++. .+++++.+-. -.+++|++. + +.+. .+
T Consensus 236 ~~l~~aL~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~gl~~~~~~~s~~v~~~~~P-~--------------g~~~--~~ 296 (348)
T d1iuga_ 236 LAVAAVLEEVLPRL-EEHLALKAWQNALLYGVGEE-GGLRPVPKRFSPAVAAFYLP-E--------------GVPY--AR 296 (348)
T ss_dssp HHHHHHHHHHGGGH-HHHHHHHHHHHHHHHHHHHH-TTCEESCSSBCTTCEEEECC-T--------------TCCH--HH
T ss_pred HHHHHHHHHHHHHH-hHHHHHHHHHHHHHhhhhhh-hhhccChhhcCCeEEEEECC-C--------------CCCH--HH
Confidence 3344454432333 33344433344455555554 5788775432 246888763 2 2221 47
Q ss_pred HHHHHHhcCcEEEE-eceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 219 VYDRIIARKVIYIV-KGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 219 L~~~L~~~G~~~vs-~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
+++.|.++|..+.. ...+.+ ..+|+. .+.+.+.+|++.+++.++++.+++
T Consensus 297 ~~~~l~~~gi~i~~G~~~l~~-~~~RIg-~mG~~~~~d~~~~~~~l~~~l~~~ 347 (348)
T d1iuga_ 297 VKEAFAQRGAVIAGGQGPLKG-KVFRLS-LMGAYDRYEALGVAGMFREVLEEI 347 (348)
T ss_dssp HHHHHHTTTEECEECCGGGTT-TEEEEC-CCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCeEEEcCccccCC-CEEEEe-CCCCCCHHHHHHHHHHHHHHHHHh
Confidence 88889999964322 223444 479996 555788999999999999988776
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=95.02 E-value=0.23 Score=51.16 Aligned_cols=229 Identities=13% Similarity=0.094 Sum_probs=115.0
Q ss_pred eeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCC-CCcEE-EEeeCCcccccccCchh---hhc-----
Q psy13453 21 IYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSF-LCPMC-SGYCGRTLHQDIQSLNA---PVS----- 90 (764)
Q Consensus 21 ~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G-~~p~~-VatAGTT~~G~iDpi~~---ia~----- 90 (764)
++.....+..+|... +.||.++.+ .+...+.........+. ..+.+ +-+-+.-++|.+=+.++ |++
T Consensus 128 y~~~~~~~~~~g~~~---~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~ 203 (403)
T d1wsta1 128 YLAAIQAFKYYDPEF---ISIPLDDKG-MRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEY 203 (403)
T ss_dssp CHHHHHHHHTTCCEE---EEEEEETTE-ECHHHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHT
T ss_pred chhhhHHHhhccccc---eeEeecccC-CccccccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhc
Confidence 456667788888777 888888643 33333333333222222 23344 46778899998866655 433
Q ss_pred CCCceeccccccc-c-----ce---------ee-eecCCCcccccccccccc------------CCcccCCCCcccHHHH
Q psy13453 91 NGPLKVGGVLRRV-Y-----SS---------CL-VPRGQKSLRTTVLFHFLF------------QHWQIPLGRRFRALKL 142 (764)
Q Consensus 91 ~~wlHVDa~l~~~-y-----~s---------~l-l~rd~~~l~~~~s~~~d~------------~d~tle~SRr~~ALkl 142 (764)
++++..|.+.... | .+ .+ +..-.+.+-..+...+-. ......+.-.......
T Consensus 204 ~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~RiG~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 283 (403)
T d1wsta1 204 DFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKILAPGFRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIA 283 (403)
T ss_dssp TCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEESTTTTCGGGCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred CceeccccchhheecCCCCCCcccccCCCCcEEEEccccceecCcccccccccchHHHHHHHHHHhhhccccccchhhhH
Confidence 8888888754211 1 11 11 100011110000000000 0000011111111111
Q ss_pred HHHHHHcc-HHHHHHHHHHHHHHHHHHHHHHhcC--CCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHH
Q psy13453 143 WMTLRSYG-LKGLQAYLRKHISLAKKFADLVEQD--DRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAV 219 (764)
Q Consensus 143 WatL~~lG-~eGy~~~i~~~i~lA~~l~~~I~~~--p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L 219 (764)
-+.+.... .+.+.+..+......+.+.+.|.+. .++. +..|+-+..+|--.|.+.+ . ..+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~-~~~p~gg~~~~~~~~~~~~------------~----~~~ 346 (403)
T d1wsta1 284 WKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPEGVE-WTKPEGGMFVRVTLPEGID------------T----KLM 346 (403)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCE-ECCCSBSSEEEEECCTTCC------------T----TTT
T ss_pred HhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhccCCeE-EeCCCceeEEEEECCCCCC------------H----HHH
Confidence 11122212 2223444555556666667777663 3444 4566666555532232211 1 246
Q ss_pred HHHHHhcCcEEEEecee----CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHc
Q psy13453 220 YDRIIARKVIYIVKGSF----QDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVLR 272 (764)
Q Consensus 220 ~~~L~~~G~~~vs~t~l----~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~~ 272 (764)
.++|.++|.+++-.... +++.++|++++. ++++++++.++.|.++.++.++
T Consensus 347 ~~~l~~~gV~v~pg~~f~~~~~~~~~iRi~~~~--~~~~~l~~al~rl~~~l~~~~k 401 (403)
T d1wsta1 347 MERAVAKGVAYVPGEAFFVHRDKKNTMRLNFTY--VPEETIREGVRRLAETIKEEMK 401 (403)
T ss_dssp HHHHHHTTEECEEGGGGSTTCCCCSEEEEECSS--SCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCEEEEechhhcCCCCCCCEEEEEecC--CCHHHHHHHHHHHHHHHHHHHh
Confidence 77788889765543323 246799998754 4688999999999988876554
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=94.66 E-value=0.099 Score=54.34 Aligned_cols=217 Identities=8% Similarity=-0.037 Sum_probs=116.1
Q ss_pred eHHHHHhhcCCCCCCeEEecCC--CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc--------CC
Q psy13453 23 ESFKATHSLSGTPDQVRLSGLP--DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS--------NG 92 (764)
Q Consensus 23 Sv~KAa~~LGl~~~~v~~Vpvd--~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~--------~~ 92 (764)
.....++..|... +.||.+ +++.+|++++++++.+. +.+++-+-+.-+||.+=+.+++.+ ++
T Consensus 129 ~~~~~~~~~g~~~---v~v~~~~~~~~~~d~~~~~~~~~~~-----~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~ 200 (395)
T d1xi9a_ 129 PYTGLVKFYGGKP---VEYRTIEEEDWQPDIDDIRKKITDR-----TKAIAVINPNNPTGALYDKKTLEEILNIAGEYEI 200 (395)
T ss_dssp HHHHHHHHTTCEE---EEEEEEGGGTSEECHHHHHHHCCTT-----EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC
T ss_pred cchhhhhhcCCEE---EEEeccccccccchHHHHHHhhccc-----ccEEEecCCCCCccchhhHHHHHHHHhhhhhcCe
Confidence 4556889999876 888875 47799999999988643 335556668899999966665443 67
Q ss_pred Cceecccccc-ccc----ee-eeecCCCccccccccccccCCcccCCCC-c---------------------------cc
Q psy13453 93 PLKVGGVLRR-VYS----SC-LVPRGQKSLRTTVLFHFLFQHWQIPLGR-R---------------------------FR 138 (764)
Q Consensus 93 wlHVDa~l~~-~y~----s~-ll~rd~~~l~~~~s~~~d~~d~tle~SR-r---------------------------~~ 138 (764)
|+-.|..... .|. +. .+...... ....+.+- .|.+.|=| + ..
T Consensus 201 ~ii~De~y~~~~~~~~~~~~~~~~~~~~v-i~~~S~SK---~~~~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (395)
T d1xi9a_ 201 PVISDEIYDLMTYEGEHISPGSLTKDVPV-IVMNGLSK---VYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPN 276 (395)
T ss_dssp CEEEECTTTTCBSSSCCCCHHHHCSSSCE-EEEEESTT---TTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSC
T ss_pred eEEeccccccccccccccchhhcCCCCCE-EEEeCcch---hcccchhhcEeeEecCHHHHHHHHHHHHHHhhcCCCCcC
Confidence 7755553211 110 00 00000000 00000000 01111111 0 00
Q ss_pred HHHHHHHHH--HccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHH
Q psy13453 139 ALKLWMTLR--SYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLN 216 (764)
Q Consensus 139 ALklWatL~--~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n 216 (764)
.+..-++.. .-+.+-+++..+..-+..+++.+.+++.+++. +..|+-+...|--.|... ..+ .
T Consensus 277 ~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~p~gg~~~~~~l~~~~------------~~~--~ 341 (395)
T d1xi9a_ 277 TPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGIS-TTKPQGAFYIFPKIEVGP------------WKN--D 341 (395)
T ss_dssp SHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTSTTEE-CCCCCBSSEECCEECSCS------------CSS--H
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCce-ecCCCeeEEEeEECCCCC------------CCC--H
Confidence 011111111 12345556666666778889999999886665 466765554441111100 111 1
Q ss_pred HHHHHH-HHhcCcEEEEecee--CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHH
Q psy13453 217 KAVYDR-IIARKVIYIVKGSF--QDRLFMRFAICSSQTEESDVQLGWNEIRTATEE 269 (764)
Q Consensus 217 ~~L~~~-L~~~G~~~vs~t~l--~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~ 269 (764)
.++..+ +.+.|.++.-...+ .+..++|++++ +.++.+++.++.|+++.++
T Consensus 342 ~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~~---~~~e~l~eal~rl~~~l~e 394 (395)
T d1xi9a_ 342 KEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL---PPIEILEEAMDRFEKFMKE 394 (395)
T ss_dssp HHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC---SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCEEEEcChhhCCCCCCEEEEEec---CCHHHHHHHHHHHHHHHhc
Confidence 233444 44568766544433 34568999875 4577888888888877543
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=94.58 E-value=0.11 Score=55.10 Aligned_cols=107 Identities=16% Similarity=0.145 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEEece
Q psy13453 156 AYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGS 235 (764)
Q Consensus 156 ~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs~t~ 235 (764)
+.+++..+.++++.+.+++. ++.++.++....+-+.... -.... ..........+...+.+.|..-.....
T Consensus 322 ~~~~~~~~~~~~l~~~L~~~-g~~~v~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~~~~~ll~~~GI~~~~~~~ 392 (465)
T d1ax4a_ 322 EYLHYRIGQVKYLGDRLREA-GIPIQYPTGGHAVFVDCKK-LVPQI-------PGDQFPAQAVINALYLESGVRAVEIGS 392 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-TCCBCSSCCSSEEEEESTT-TCTTS-------CGGGCHHHHHHHHHHHHHCEECEEESH
T ss_pred HHHHHHHHHHHHHHHHHHhh-cCccccCCCcceeeeehhh-hcCCC-------ccccchhHHHHHHHHHhcCceeccccc
Confidence 35566777889999999985 6676655544443332110 00000 000111123344455566653221110
Q ss_pred ----e---------CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy13453 236 ----F---------QDRLFMRFAICSSQTEESDVQLGWNEIRTATEEVL 271 (764)
Q Consensus 236 ----l---------~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i~ 271 (764)
+ .....+|+++-..-.|++++|.+++.|+++.++..
T Consensus 393 ~~~~~~~~~g~~~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~~~~ 441 (465)
T d1ax4a_ 393 FLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFA 441 (465)
T ss_dssp HHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHT
T ss_pred cccccccccCCccCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 0 01247998653223489999999999999877643
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=94.21 E-value=0.65 Score=46.54 Aligned_cols=198 Identities=5% Similarity=-0.025 Sum_probs=109.8
Q ss_pred eeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc----CCCceec
Q psy13453 22 YESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS----NGPLKVG 97 (764)
Q Consensus 22 YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~----~~wlHVD 97 (764)
.+...+++++|... +.||+++++..+-. ....+.+++-+-++-++|.+=+.+++.. ++++-+|
T Consensus 107 ~~~~~~~~~~g~~~---v~v~~~~~~~~~~~----------~~~~~~~l~l~nP~NPtG~~~s~~~l~~~~~~~~~ii~D 173 (334)
T d2f8ja1 107 SCYRIFAKAVGAKF---LEVPLTKDLRIPEV----------NVGEGDVVFIPNPNNPTGHVFEREEIERILKTGAFVALD 173 (334)
T ss_dssp HHHHHHHHHHTCCE---EECCCCTTSCCCCC----------CCCTTEEEEEESSCTTTCCCCCHHHHHHHHTTTCEEEEE
T ss_pred cccccchhccCCcc---cccccccccccccc----------ccccceEEEecccccccceeecHHHhhccccceeEEeec
Confidence 34567789999988 99999987766421 1122345555568999999877666554 6666555
Q ss_pred cccccc-c----------ceee-eecCCCccc-cccccccc------------cCCcccCCCCcccHHHHHHHHHHccHH
Q psy13453 98 GVLRRV-Y----------SSCL-VPRGQKSLR-TTVLFHFL------------FQHWQIPLGRRFRALKLWMTLRSYGLK 152 (764)
Q Consensus 98 a~l~~~-y----------~s~l-l~rd~~~l~-~~~s~~~d------------~~d~tle~SRr~~ALklWatL~~lG~e 152 (764)
-..... + ...+ +..-.+++. ......+- +. .+...|+... ..+++.+. ..+
T Consensus 174 d~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~i~~l~~~~-~~~~~s~~~~-~~a~~~l~--~~~ 249 (334)
T d2f8ja1 174 EAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVR-LPFNVSYVSQ-MFAKVALD--HRE 249 (334)
T ss_dssp CTTGGGTCCCCGGGGGTCSSEEEEEESTTTSSCTTTCEEEEEECHHHHHHHHHHS-CTTCSCHHHH-HHHHHHHH--THH
T ss_pred ccchhhcccccccccccCceEEEEecCccccchhhhhhhhcccchHHHHHHHHhh-cccccchhhh-hhcccccc--ccc
Confidence 421100 0 0111 111111100 00000000 11 1111222111 12233333 356
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEEE
Q psy13453 153 GLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIV 232 (764)
Q Consensus 153 Gy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~vs 232 (764)
-+.+..+...+..+++.+.++++ ++++. +|+-+-+.+++. . .-..++.+.|.++|.+...
T Consensus 250 ~~~~~~~~~~~~r~~l~~~L~~~-g~~~~-~~~g~f~~~~~~----------------~--~~~~~~~~~L~~~GI~vr~ 309 (334)
T d2f8ja1 250 IFEERTKFIVEERERMKSALREM-GYRIT-DSRGNFVFVFME----------------K--EEKERLLEHLRTKNVAVRS 309 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-TCEEC-CCCSSEEEEECC----------------H--HHHHHHHHHHHHTTEECEE
T ss_pred chhhHHHHHHHHHHHHHHHHHHC-CCeEC-CCCceEEEEECC----------------C--CCHHHHHHHHHHCCCEECC
Confidence 67777888888888999999987 78864 566553333221 0 1125788999999975422
Q ss_pred eceeCCeeEEEEeccCCCCCHHHHHHHHHHHHH
Q psy13453 233 KGSFQDRLFMRFAICSSQTEESDVQLGWNEIRT 265 (764)
Q Consensus 233 ~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~ 265 (764)
+ +.++|+++. +.++++.+++.|++
T Consensus 310 ---~--~~~vRis~g----~~ee~~~l~~~l~~ 333 (334)
T d2f8ja1 310 ---F--REGVRITIG----KREENDMILRELEV 333 (334)
T ss_dssp ---E--TTEEEEECC----CHHHHHHHHHHHHH
T ss_pred ---C--CCeEEEEcC----CHHHHHHHHHHHhc
Confidence 2 358999975 45677888887765
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=94.05 E-value=0.62 Score=49.55 Aligned_cols=209 Identities=12% Similarity=0.048 Sum_probs=127.0
Q ss_pred eEEecCC-CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCch---hhhc--CCCceecccc-----------
Q psy13453 38 VRLSGLP-DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLN---APVS--NGPLKVGGVL----------- 100 (764)
Q Consensus 38 v~~Vpvd-~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~---~ia~--~~wlHVDa~l----------- 100 (764)
.+.-++| +++.+|.++|++...+. +|=+| .+|.+.+=-.-|+. +|++ +.++++|+.+
T Consensus 155 ~~~y~v~~~~~~IDyd~l~~~a~~~-----kPklI-i~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~ 228 (470)
T d1rv3a_ 155 SMAYKVNPDTGYIDYDRLEENARLF-----HPKLI-IAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVP 228 (470)
T ss_dssp EEEECBCTTTCSBCHHHHHHHHHHH-----CCSEE-EECCSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSC
T ss_pred eeEEEEecccCcccHHHHHHHHHhh-----CcceE-eechhhccccCCHHHHHHHHhccCCeEEecchhhhhhccccccC
Confidence 3678888 46899999999999875 35331 22333332333444 4555 7789999954
Q ss_pred ------------ccc-----cceeeeecCCC---------ccccccccccccC-CcccCCCCcccHH-HHHHHHHHccHH
Q psy13453 101 ------------RRV-----YSSCLVPRGQK---------SLRTTVLFHFLFQ-HWQIPLGRRFRAL-KLWMTLRSYGLK 152 (764)
Q Consensus 101 ------------~~~-----y~s~ll~rd~~---------~l~~~~s~~~d~~-d~tle~SRr~~AL-klWatL~~lG~e 152 (764)
+|+ -++++++++.. .....+...+|.+ -+++|++=....+ ++-.+++..-..
T Consensus 229 sPl~~aDvvt~tTHKtlrGPrgGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea~~~ 308 (470)
T d1rv3a_ 229 SPFEHCHVVTTTTHKTLRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTP 308 (470)
T ss_dssp CGGGTCSEEEEESSGGGCCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSH
T ss_pred ChhheeeeeeeehhhhccCCcceEEEEccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHhcCh
Confidence 111 23566665431 0111111112222 2578888755555 445567776777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEeC-CCCceeEEEEeeccccccccccccCccCCccHHH-HHHHHHHHhcCcEE
Q psy13453 153 GLQAYLRKHISLAKKFADLVEQDDRFELVC-PPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLN-KAVYDRIIARKVIY 230 (764)
Q Consensus 153 Gy~~~i~~~i~lA~~l~~~I~~~p~~ell~-~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n-~~L~~~L~~~G~~~ 230 (764)
-|++..++.+++|+.|++.+.+. +|.++. --+..+|.....+.+ ++ .+..+.|.+.|. .
T Consensus 309 ~fk~Ya~qvv~NAk~La~~L~~~-G~~v~~ggTdnHlvlvdl~~~g-----------------~~g~~ae~~Le~~gI-~ 369 (470)
T d1rv3a_ 309 EFKEYQRQVVANCRALSAALVEL-GYKIVTGGSDNHLILVDLRSKG-----------------TDGGRAEKVLEACSI-A 369 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEEGGGGT-----------------CCHHHHHHHHHHTTE-E
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CceeccCCCCCceEEEeecccC-----------------CcHHHHHHHHHHcCc-E
Confidence 78999999999999999999985 899984 344555655443321 12 345566666775 3
Q ss_pred EEeceeCC------eeEEEEec---cCCCCCHHHHHHHHHHHHHHHHHHH
Q psy13453 231 IVKGSFQD------RLFMRFAI---CSSQTEESDVQLGWNEIRTATEEVL 271 (764)
Q Consensus 231 vs~t~l~g------~~~LRi~v---~np~Tt~e~i~~~l~~l~~~~~~i~ 271 (764)
++.+.+-+ +..||+-. +.--..++|+.++-+.|.++.+...
T Consensus 370 ~Nkn~iP~D~~~~~~sGiRiGT~alTtrG~~e~dm~~iA~~I~~~l~~~~ 419 (470)
T d1rv3a_ 370 CNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTV 419 (470)
T ss_dssp CEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCcCCCCCCCCCCCeeEecCHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 44444432 46799843 2233466888888888877765443
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=93.80 E-value=0.5 Score=50.16 Aligned_cols=205 Identities=15% Similarity=0.089 Sum_probs=122.0
Q ss_pred EEecCC-CCCcccHHHHHHHHHHHhhCCCCc-EEEEeeCCcccc---cccCchhhhc--CCCceecccc-----------
Q psy13453 39 RLSGLP-DSEWLAYLTLRTIYESFRKSFLCP-MCSGYCGRTLHQ---DIQSLNAPVS--NGPLKVGGVL----------- 100 (764)
Q Consensus 39 ~~Vpvd-~~~rmD~~aLe~~I~~~~~~G~~p-~~VatAGTT~~G---~iDpi~~ia~--~~wlHVDa~l----------- 100 (764)
...++| +++.+|.+++++...+. +| ++|+ |.+.+= -+..+.+|++ +.++++|+.+
T Consensus 152 ~~Y~~d~~~~~IDyd~~~~~a~~~-----kPklIi~--G~S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~ 224 (463)
T d2a7va1 152 MPYKLNPKTGLIDYNQLALTARLF-----RPRLIIA--GTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIP 224 (463)
T ss_dssp --CCBCTTTCSBCHHHHHHHHHHH-----CCSEEEE--CCSSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSC
T ss_pred eeeeccCCCCcCcHHHHHHHHhhc-----CCceEEe--cccccccccCHHHHHHHhhcccceEEechhhhhHHhhhhhhc
Confidence 445566 67899999999999986 35 3332 222222 2334445665 8889999954
Q ss_pred ------------ccc-----cceeeeecCCCc---------cccccccccccC-CcccCCCCcccHH-HHHHHHHHccHH
Q psy13453 101 ------------RRV-----YSSCLVPRGQKS---------LRTTVLFHFLFQ-HWQIPLGRRFRAL-KLWMTLRSYGLK 152 (764)
Q Consensus 101 ------------~~~-----y~s~ll~rd~~~---------l~~~~s~~~d~~-d~tle~SRr~~AL-klWatL~~lG~e 152 (764)
+|+ -++++++++... ....+...+|.. -++++++-....+ ++-.+++..-..
T Consensus 225 sP~~~aDvvt~tTHKTlrGPrgGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~ 304 (463)
T d2a7va1 225 SPFKHADIVTTTTHKTLRGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTP 304 (463)
T ss_dssp CGGGTCSEEEEESSGGGCSCSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSH
T ss_pred ChhhhhhhhhchhhhhhcCCCceEEEEcccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHhcCc
Confidence 111 235666655210 000111112211 3678888855555 445566666678
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEeCC-CCceeEEEEeeccccccccccccCccCCccHHHHHHHHHHHhcCcEEE
Q psy13453 153 GLQAYLRKHISLAKKFADLVEQDDRFELVCP-PSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYI 231 (764)
Q Consensus 153 Gy~~~i~~~i~lA~~l~~~I~~~p~~ell~~-P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~L~~~G~~~v 231 (764)
.|++..++.+++|+.|++.+.+. +|.++.. -+..+|.+...|.+.. -....+.|.+.|. .+
T Consensus 305 ~fk~Ya~qVv~NAk~La~~L~~~-G~~vv~ggTdnHlvlvdl~~~~~~----------------G~~ae~~Le~~gI-~~ 366 (463)
T d2a7va1 305 MFREYSLQVLKNARAMADALLER-GYSLVSGGTDNHLVLVDLRPKGLD----------------GARAERVLELVSI-TA 366 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECTTTTCC----------------HHHHHHHHHHTTE-EC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCCCCceeeeeccccCCC----------------HHHHHHHHHhccC-cc
Confidence 89999999999999999999985 9999853 4555666654432211 1345556666664 45
Q ss_pred EeceeCC------eeEEEEeccCC---CCCHHHHHHHHHHHHHHHH
Q psy13453 232 VKGSFQD------RLFMRFAICSS---QTEESDVQLGWNEIRTATE 268 (764)
Q Consensus 232 s~t~l~g------~~~LRi~v~np---~Tt~e~i~~~l~~l~~~~~ 268 (764)
+.+.+-+ +..||+-.... -..++++.++-+.|.++..
T Consensus 367 Nkn~iP~D~~~~~~sGiRiGT~a~TtrG~~e~dm~~iA~~I~~~l~ 412 (463)
T d2a7va1 367 NKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 412 (463)
T ss_dssp EEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCccCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 5554432 35799843211 2355777777777766553
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=92.97 E-value=0.13 Score=52.98 Aligned_cols=214 Identities=9% Similarity=0.027 Sum_probs=109.5
Q ss_pred eHHHHHhhcCCCCCCeEEecCC--CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchh---hhc-----CC
Q psy13453 23 ESFKATHSLSGTPDQVRLSGLP--DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNA---PVS-----NG 92 (764)
Q Consensus 23 Sv~KAa~~LGl~~~~v~~Vpvd--~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~---ia~-----~~ 92 (764)
....+++..|... +.||++ +++.+|+++|++++.+. +.+++-+-+.-|||.+=+-++ +++ ++
T Consensus 127 ~~~~~~~~~g~~~---~~v~~~~~~~~~~d~~~l~~~~~~~-----~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~ 198 (382)
T d1b5pa_ 127 SYPEMVRFAGGVV---VEVETLPEEGFVPDPERVRRAITPR-----TKALVVNSPNNPTGAVYPKEVLEALARLAVEHDF 198 (382)
T ss_dssp HHHHHHHHTTCEE---EEEECCGGGTTCCCHHHHHTTCCTT-----EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCeE---EEEecccccccCCCHHHHHHhCCCC-----CeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCe
Confidence 4567788888776 889886 35689999999988642 234555568889999966555 333 77
Q ss_pred Cceeccccccc-c-----ce--------eeeecCCCccc-cccccccc---------cCCcccCCCCcccHHHHHHHHHH
Q psy13453 93 PLKVGGVLRRV-Y-----SS--------CLVPRGQKSLR-TTVLFHFL---------FQHWQIPLGRRFRALKLWMTLRS 148 (764)
Q Consensus 93 wlHVDa~l~~~-y-----~s--------~ll~rd~~~l~-~~~s~~~d---------~~d~tle~SRr~~ALklWatL~~ 148 (764)
|+=.|-+.... | .. +.+..-.+.+. .-+.+.+- +........-....+..++....
T Consensus 199 ~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlR~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (382)
T d1b5pa_ 199 YLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEA 278 (382)
T ss_dssp EEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHH
T ss_pred EEEEEccccceecCCCCCCHHHcCCCCEEEEecchhhccCcHhheEEEEECHHHHHHHHHHHHhcccCcccccccccccc
Confidence 77666543111 1 00 11111011100 00000000 00000011111122222232222
Q ss_pred c-cH---HHHHHHHHH-HHHHHHHHHHHHhcCCCeEEeCCCCceeEEE-EeeccccccccccccCccCCccHHHHHHHHH
Q psy13453 149 Y-GL---KGLQAYLRK-HISLAKKFADLVEQDDRFELVCPPSMGLVCF-RLKVRFWDKLDNLFGTISFGDNDLNKAVYDR 222 (764)
Q Consensus 149 l-G~---eGy~~~i~~-~i~lA~~l~~~I~~~p~~ell~~P~l~iV~F-ry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~ 222 (764)
+ .. +-+.+..++ .-+..+.+.+.+++. +++. .+|+-+..+| +..|. ..+ ...+.+.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~-~~p~gg~~~~~~~~~~--------------~~~--~~~~~~~ 340 (382)
T d1b5pa_ 279 LTNQEASRAFVEMAREAYRRRRDLLLEGLTAL-GLKA-VRPSGAFYVLMDTSPI--------------APD--EVRAAER 340 (382)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCB-CCCSBTTEEEEECTTT--------------CSS--HHHHHHH
T ss_pred cccccchhHHHHHHHHHHHhhhhHHHHHHhhc-CCeE-ecCCceEEEeEeCCCC--------------CCC--HHHHHHH
Confidence 2 11 222222222 222344555556553 5664 5666555444 33221 111 2456778
Q ss_pred HHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHH
Q psy13453 223 IIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRT 265 (764)
Q Consensus 223 L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~ 265 (764)
|.+.|.++.......+..++|++++. .++.+++.++.|.+
T Consensus 341 l~e~gV~v~PG~~F~~~~~iRis~~~---~~e~l~~al~rl~~ 380 (382)
T d1b5pa_ 341 LLEAGVAVVPGTDFAAFGHVRLSYAT---SEENLRKALERFAR 380 (382)
T ss_dssp HHHTTEECEESGGGTCTTEEEEECCS---CHHHHHHHHHHGGG
T ss_pred HHHCCEEEEeCcccCCCCeEEEEEcC---CHHHHHHHHHHHHH
Confidence 88899877766666666789998853 56788887777654
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.05 E-value=0.11 Score=53.64 Aligned_cols=66 Identities=2% Similarity=-0.171 Sum_probs=49.1
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeC-CcccccccCchhhhc-----CCC
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCG-RTLHQDIQSLNAPVS-----NGP 93 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAG-TT~~G~iDpi~~ia~-----~~w 93 (764)
.|.|+..++++.|.+. |..+ |+++|+++|+++++ +++-+.+ +...+.+++++++++ ++|
T Consensus 102 ~~~~~~~~~~l~g~~~-----v~~~-----d~e~l~~~i~~~tk-----~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~ 166 (366)
T d2aeua1 102 GHPSIERSCKIVNAKY-----FESD-----KVGEILNKIDKDTL-----VIITGSTMDLKVIELENFKKVINTAKNKEAI 166 (366)
T ss_dssp CCTHHHHHHHHTTCEE-----EEES-----CHHHHHTTCCTTEE-----EEEECBCTTSCBCCHHHHHHHHHHHHHHTCC
T ss_pred cchhHHHHHHhcCCeE-----ECCC-----CHHHHHHhcCCCce-----EEEEEecCCCCcCCHHHHHHHHHHhccCcEE
Confidence 6899999999998643 4433 79999999987532 4443344 445677889999876 999
Q ss_pred ceecccc
Q psy13453 94 LKVGGVL 100 (764)
Q Consensus 94 lHVDa~l 100 (764)
+.+|.+.
T Consensus 167 ~i~De~y 173 (366)
T d2aeua1 167 VFVDDAS 173 (366)
T ss_dssp EEEECTT
T ss_pred EEEecCc
Confidence 9999964
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=91.98 E-value=0.54 Score=47.07 Aligned_cols=100 Identities=9% Similarity=0.016 Sum_probs=56.9
Q ss_pred HHHccHHHHHHHHHHHHHHHHHHHHHHhcCCC-eEEeCCCC---ceeEEEEeeccccccccccccCccCCccHHHHHHHH
Q psy13453 146 LRSYGLKGLQAYLRKHISLAKKFADLVEQDDR-FELVCPPS---MGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYD 221 (764)
Q Consensus 146 L~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~-~ell~~P~---l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~ 221 (764)
+...+..+..+..++... ........... ..+..++. ..++||++.. ......+.+
T Consensus 255 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~rS~~vvsf~i~~-----------------~~~~~~~~~ 314 (360)
T d1w23a_ 255 KDLGGAEAIAKQNEEKAK---IIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRN-----------------EELNQQFLA 314 (360)
T ss_dssp HHTTHHHHHHHHHHHHHH---HHHHHHHTTTTSSEESSCGGGBCSSEEEEECSS-----------------HHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHH---HHHHHHhhcccccccCCChhhcceeEEEEEcCC-----------------CccHHHHHH
Confidence 333444555444444433 33333333333 33443332 3589997631 123457888
Q ss_pred HHHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13453 222 RIIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTATE 268 (764)
Q Consensus 222 ~L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~ 268 (764)
.|.++|....+. .+..-.+|++ +.+.++.|+++.+++.+++.-+
T Consensus 315 ~l~~~GI~~~~G--~~~~ggiRiS-~~~~~t~e~V~~Li~~~~~~~~ 358 (360)
T d1w23a_ 315 KAKEQGFVGLNG--HRSVGGCRAS-IYNAVPIDACIALRELMIQFKE 358 (360)
T ss_dssp HHHHTTEESCBC--CTTTCSEEEE-CCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCeeeeC--CCccCcEEEE-eeCCCCHHHHHHHHHHHHHHHh
Confidence 888899853222 2211248997 4667789999999999887643
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=90.43 E-value=0.83 Score=47.61 Aligned_cols=140 Identities=16% Similarity=0.170 Sum_probs=86.3
Q ss_pred hcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCceecccccccc
Q psy13453 30 SLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKVGGVLRRVY 104 (764)
Q Consensus 30 ~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHVDa~l~~~y 104 (764)
-+|+.. ..|.. .|+++++++|+.++ -++..=.++-++..+=||+++++ ++++-||.-..-++
T Consensus 125 ~~Gi~~---~~vd~-----~d~~~~~~~i~~~T-----klv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvDnT~atP~ 191 (397)
T d1y4ia1 125 KFGINV---RFVDA-----GKPEEIRAAMRPET-----KVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPY 191 (397)
T ss_dssp HTTCEE---EEECT-----TSHHHHHHHCCTTE-----EEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTT
T ss_pred CCceEe---eccCC-----CCHHHHHHhcCCCC-----cEEEecCCcccceeecccHHHHHHhhcCCceEEecCcccCcc
Confidence 456655 55543 36899999987643 25546668889999999999886 88999999532221
Q ss_pred -------c-eeeeecCCCccccc-------ccccccc----CCccc--CCCCcccHHHHHHHHHHccHHHHHHHHHHHHH
Q psy13453 105 -------S-SCLVPRGQKSLRTT-------VLFHFLF----QHWQI--PLGRRFRALKLWMTLRSYGLKGLQAYLRKHIS 163 (764)
Q Consensus 105 -------~-s~ll~rd~~~l~~~-------~s~~~d~----~d~tl--e~SRr~~ALklWatL~~lG~eGy~~~i~~~i~ 163 (764)
+ -+++..--+++.+- ....-.+ .-+.+ -.+-..+....|+.++ |.+-+.-++++..+
T Consensus 192 ~~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G~~l~p~~a~l~~r--gl~TL~lRm~~~~~ 269 (397)
T d1y4ia1 192 CQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLR--GVKTLGIRMERHCE 269 (397)
T ss_dssp TCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHH--HHTTHHHHHHHHHH
T ss_pred cCcchhcCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcCCcCCHHHHHHHHc--CcCcHHHHHHHHHH
Confidence 1 13333222222210 0000000 00000 0122344567787664 67779999999999
Q ss_pred HHHHHHHHHhcCCCeEEeCCC
Q psy13453 164 LAKKFADLVEQDDRFELVCPP 184 (764)
Q Consensus 164 lA~~l~~~I~~~p~~ell~~P 184 (764)
+|..+++.|+++|.++-+.=|
T Consensus 270 nA~~lA~~L~~hp~V~~V~yP 290 (397)
T d1y4ia1 270 NALKIARFLEGHPSITRVYYP 290 (397)
T ss_dssp HHHHHHHHHHTCTTEEEEECT
T ss_pred HHHHHHHHHHhCCCcCeEeCC
Confidence 999999999999998765433
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=90.22 E-value=0.83 Score=46.82 Aligned_cols=224 Identities=9% Similarity=-0.053 Sum_probs=115.8
Q ss_pred eeeeHHHHHhhcCCCCCCeEEecCC---CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchh---hhc---
Q psy13453 20 LIYESFKATHSLSGTPDQVRLSGLP---DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNA---PVS--- 90 (764)
Q Consensus 20 ~~YSv~KAa~~LGl~~~~v~~Vpvd---~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~---ia~--- 90 (764)
..|....++...|... +.+|.+ ..+..|.+.++..+... ++-+++-+-+.-|||++=+-++ +++
T Consensus 122 ~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~~d~~~~~~~~~~~----~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~ 194 (394)
T d1c7na_ 122 VYYPFFMAIKNQERKI---IECELLEKDGYYTIDFQKLEKLSKDK----NNKALLFCSPHNPVGRVWKKDELQKIKDIVL 194 (394)
T ss_dssp CCTHHHHHHHTTTCEE---EECCCEEETTEEECCHHHHHHHHTCT----TEEEEEEESSBTTTTBCCCHHHHHHHHHHHH
T ss_pred cccchhhHHhhhhhcc---cccccccccccccchhhhhhhhhccc----cceEEEecccccccceeccHHHhhhhhcccc
Confidence 3577788888888877 777764 34568999888877431 1224466778999999966555 433
Q ss_pred --CCCceeccccccc-c-----ce------------eeeecCCCcccc-cccccc----c---------cCCcccCCCCc
Q psy13453 91 --NGPLKVGGVLRRV-Y-----SS------------CLVPRGQKSLRT-TVLFHF----L---------FQHWQIPLGRR 136 (764)
Q Consensus 91 --~~wlHVDa~l~~~-y-----~s------------~ll~rd~~~l~~-~~s~~~----d---------~~d~tle~SRr 136 (764)
++|+-+|-+.... | .+ +.+..-.+.+.- .+...+ + .......++-.
T Consensus 195 ~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~~~~~~~i~~~~~~~~~~~~~~~~~ 274 (394)
T d1c7na_ 195 KSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFT 274 (394)
T ss_dssp HSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCC
T ss_pred ccceeEeccccccccccCCccccchhhhhcccccceeecccccccccccccccccccccChhhhhhhhhhhhhccccccc
Confidence 8888777643111 0 00 001000000000 000000 0 00001111111
Q ss_pred c-cHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEeCCCCceeEEEEeeccccccccccccCccCCccH
Q psy13453 137 F-RALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQ-DDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDND 214 (764)
Q Consensus 137 ~-~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~-~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~ 214 (764)
. .+..... ....+.+-+.++.+..-+..+.+.+.++. .+++.. ..|+-+..+|--.|.. ..+
T Consensus 275 ~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~p~g~~~~~~~~~~~-------------~~~- 338 (394)
T d1c7na_ 275 TLGYKACEI-CYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKA-PLIEGTYLQWIDFRAL-------------KMD- 338 (394)
T ss_dssp HHHHHHHHH-HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBC-CCCSBSSEEEEECGGG-------------CCC-
T ss_pred cccchhhhh-hhcchhhhhcccccccchhhhhhhhhhhccccceee-cCCCceeEEEEECCCC-------------CCC-
Confidence 1 1112222 22233455555555555555566666654 456653 4565555454211110 111
Q ss_pred HHHHHHHHHHhc-CcEEEEecee--CCeeEEEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q psy13453 215 LNKAVYDRIIAR-KVIYIVKGSF--QDRLFMRFAICSSQTEESDVQLGWNEIRTATEEV 270 (764)
Q Consensus 215 ~n~~L~~~L~~~-G~~~vs~t~l--~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~~i 270 (764)
..++.++|.++ |.+..-...+ .+..++|++++ +.++.+++.++.|+++.++|
T Consensus 339 -~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~---~~~e~i~eal~rl~~~l~~L 393 (394)
T d1c7na_ 339 -HKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLA---APSSVIQESLERLNKALKDL 393 (394)
T ss_dssp -HHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECC---SCHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEEEe---CCHHHHHHHHHHHHHHHHhc
Confidence 24567777655 7755543333 34568999876 35788999999998887765
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=89.80 E-value=0.91 Score=46.29 Aligned_cols=216 Identities=10% Similarity=0.004 Sum_probs=110.2
Q ss_pred eeHHHHHhhcCCCCCCeEEecCC-CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc--------CC
Q psy13453 22 YESFKATHSLSGTPDQVRLSGLP-DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS--------NG 92 (764)
Q Consensus 22 YSv~KAa~~LGl~~~~v~~Vpvd-~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~--------~~ 92 (764)
+....++..+|... +.++++ ..+.+|+++|++++.+. +-+++-+-++.++|++=+.+++.+ +.
T Consensus 122 ~~~~~~~~~~g~~~---~~~~~~~~~~~~d~~~l~~~~~~~-----~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~ 193 (382)
T d1u08a_ 122 DSYAPAIALSGGIV---KRMALQPPHFRVDWQEFAALLSER-----TRLVILNTPHNPSATVWQQADFAALWQAIAGHEI 193 (382)
T ss_dssp TTHHHHHHHTTCEE---EEEECCTTTCCCCHHHHHHHCCTT-----EEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCC
T ss_pred cchhhhhhhccccc---eecccccccccCCHHHHhhhhccC-----ccEEEECCCCcccccccccccchhhhhhhccccc
Confidence 55667778888655 777886 46689999999887753 224456779999999977666443 44
Q ss_pred Cceeccccccc-c---c------------ee-eeecCCCccc-cccccccc------------cCCcccCCCCcccHHHH
Q psy13453 93 PLKVGGVLRRV-Y---S------------SC-LVPRGQKSLR-TTVLFHFL------------FQHWQIPLGRRFRALKL 142 (764)
Q Consensus 93 wlHVDa~l~~~-y---~------------s~-ll~rd~~~l~-~~~s~~~d------------~~d~tle~SRr~~ALkl 142 (764)
++-.|...... + . .. ++..-.+... .-+...+- ..+...-+.-...-+.+
T Consensus 194 ~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~RiG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~a~ 273 (382)
T d1u08a_ 194 FVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLAL 273 (382)
T ss_dssp EEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHH
T ss_pred eeeeecchhhccccccccccccccccccCcEEEEeeccccccCCcccchhhhccchhHHHHHhhhccccccccccccccc
Confidence 44444321000 0 0 00 0000000000 00000000 00111111111112222
Q ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHH
Q psy13453 143 WMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDR 222 (764)
Q Consensus 143 WatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~ 222 (764)
...|. -|.+-+.++.+..-+..+.+.+.++. .++.. .+|+-+..+|--.|.. ...| ..++.++
T Consensus 274 ~~~l~-~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~-~~p~gg~~~~~~~~~~------------~~~d--~~e~~~~ 336 (382)
T d1u08a_ 274 ADMLR-AEPEHYLALPDFYRQKRDILVNALNE-SRLEI-LPCEGTYFLLVDYSAV------------STLD--DVEFCQW 336 (382)
T ss_dssp HHHHH-HCTHHHHTHHHHHHHHHHHHHHHTTS-SSCEE-CCCCBSSEEEEECTTT------------CCSC--HHHHHHH
T ss_pred ccccc-cchHHHHHHHHHHHhhhhhhhhhhcc-CCcEE-ecCCceEEEEEecCCC------------CCCC--HHHHHHH
Confidence 22232 24455555655555566677777654 57875 5677665555222210 0111 2356666
Q ss_pred HH-hcCcEEEEecee----CCeeEEEEeccCCCCCHHHHHHHHHHHHH
Q psy13453 223 II-ARKVIYIVKGSF----QDRLFMRFAICSSQTEESDVQLGWNEIRT 265 (764)
Q Consensus 223 L~-~~G~~~vs~t~l----~g~~~LRi~v~np~Tt~e~i~~~l~~l~~ 265 (764)
|. +.|..++-.... .+..++|+++++ .++++++.++.|++
T Consensus 337 ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~~---~~e~l~~al~RL~~ 381 (382)
T d1u08a_ 337 LTQEHGVAAIPLSVFCADPFPHKLIRLCFAK---KESTLLAAAERLRQ 381 (382)
T ss_dssp HHHHSCEECEEGGGGCSSCCCSCEEEEECCS---CHHHHHHHHHHHTT
T ss_pred HHHHCCEEEEcchhhCCCCCCCCEEEEEEeC---CHHHHHHHHHHHhC
Confidence 54 457765544333 245689999863 56788888777654
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=89.20 E-value=0.86 Score=47.30 Aligned_cols=129 Identities=13% Similarity=0.094 Sum_probs=79.3
Q ss_pred ccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCceecccccccc--------ceeeeecCCCc
Q psy13453 49 LAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLKVGGVLRRVY--------SSCLVPRGQKS 115 (764)
Q Consensus 49 mD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlHVDa~l~~~y--------~s~ll~rd~~~ 115 (764)
.|.+++++++..+++ ++..=.++-++.-+=||+++++ ++.+=||.-..-++ +-+++..--++
T Consensus 123 ~d~~~~~~~~~~~t~-----~v~~EspsNP~l~v~Di~~i~~ia~~~g~~~vVDNT~atP~~~~Pl~~GaDiVvhS~TKy 197 (384)
T d1cs1a_ 123 GDEQALRAALAEKPK-----LVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKY 197 (384)
T ss_dssp TCHHHHHHHHHTCCS-----EEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTT
T ss_pred CCHHHHHhhcccccc-----EEEEeccccccceeccHHHHhhhhhhcCcEEEEeccccCcccccccccCCCEEEEccccc
Confidence 478889998887532 5556667778888888999875 77888888431111 11333322222
Q ss_pred cccc-------ccc-ccc----cCCcccCCCCcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCC
Q psy13453 116 LRTT-------VLF-HFL----FQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCP 183 (764)
Q Consensus 116 l~~~-------~s~-~~d----~~d~tle~SRr~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~ 183 (764)
+.+. ... ..+ ...+.-..+-.......|+.++ |.+-+.-+++++.++|..+++.|+++|.++-+.-
T Consensus 198 i~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll~r--gL~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~y 275 (384)
T d1cs1a_ 198 LNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLR--GLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYH 275 (384)
T ss_dssp TTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEEC
T ss_pred cccCCCcccccccCCchhhhhhhhhhhhhhhhccccccHHHHhh--ccchhHHHHHHHHHHHHHHHHhcccCCceeeeee
Confidence 2111 000 000 0000001112344556787766 7788999999999999999999999999876654
Q ss_pred C
Q psy13453 184 P 184 (764)
Q Consensus 184 P 184 (764)
|
T Consensus 276 P 276 (384)
T d1cs1a_ 276 P 276 (384)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=88.22 E-value=0.25 Score=52.27 Aligned_cols=154 Identities=8% Similarity=-0.060 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCCCCCcEEEeCChHHHHHHHHHHHHHHHhhhhccCCCCCccccccCceEEEecCCc
Q psy13453 561 TELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQS 640 (764)
Q Consensus 561 t~lE~~v~~~la~llG~p~~~~~~~~~~~~GvfTsGgTeANl~Al~aAR~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~a 640 (764)
.+|++++.+ +.++.|-... +....++++|+||.+..++.+-... . .. ....|...|++..=.
T Consensus 103 ~~L~~~i~~-lh~~~gna~t------~~~~IvvG~Gsteli~~~~~AL~~~----~-~~------~~~~pg~~Vv~~~P~ 164 (425)
T d2hoxa1 103 FELEKTIKE-LHEVVGNAAA------KDRYIVFGVGVTQLIHGLVISLSPN----M-TA------TPDAPESKVVAHAPF 164 (425)
T ss_dssp HHHHHHHHH-HHHHHTCBCC------TTCEEEEESHHHHHHHHHHHHHSCC----T-TT------CTTSCCEEEEECSSC
T ss_pred HHHHHHHHH-HHhhhCCCCC------CCCEEEECCCHHHHHHHHHHHhccc----c-cc------ccCCCCCEEEEecCc
Confidence 356665555 4556664321 1234889999999876665533111 0 00 011233455655555
Q ss_pred chhHHHHHHhCCCceEEEecCCCCcccHHHHHHHHHHhhhcCCCceEEEEeeccCCccccccHHHHHHHHHhcCCEEEEe
Q psy13453 641 NSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVD 720 (764)
Q Consensus 641 H~Sv~kAa~~lGl~v~~Vp~d~~g~md~~~Le~~I~~~~~~G~~p~~VvataGTT~~GaiDpl~eIa~i~~~~glwLHVD 720 (764)
.......+.++|.....+ .+|.+.+++++++. +.+++.+..++.+|.+-. +-.+++++.+|
T Consensus 165 y~~Y~~~~~~~~~~~~~~------~~D~~~~~~~~~~~------~~ii~l~sPnNPtG~l~~-------~v~~~~~~I~D 225 (425)
T d2hoxa1 165 YPVFREQTKYFDKKGYVW------AGNAANYVNVSNPE------QYIEMVTSPNNPEGLLRH-------AVIKGCKSIYD 225 (425)
T ss_dssp CHHHHHHHHHSCBTTEEE------EEEGGGGTTCSCGG------GEEEEEESSCTTTCCCCC-------CSSTTCEEEEE
T ss_pred cccHHHHHHHcCCCCCcc------CCCHHHHHhhCCCC------ceEEEEECCCCCCcchhh-------hhhhCCEEEEe
Confidence 556666678887754443 45566666655443 559999999999998731 22368999999
Q ss_pred ccccccccccchhhhhhcCCCcccEEEEcCCccCCCC
Q psy13453 721 AAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVN 757 (764)
Q Consensus 721 aA~Gg~~l~~~~~r~~l~gie~aDSit~d~HK~l~~P 757 (764)
-+|.+... .+ +.....=+-+..++-|.++.|
T Consensus 226 EaY~~~~f-~~-----~~~~~~~~Ivl~S~SK~fgla 256 (425)
T d2hoxa1 226 MVYYWPHY-TP-----IKYKADEDILLFTMSKFTGHS 256 (425)
T ss_dssp CTTCSTTT-SC-----CCSCBCCSEEEEEHHHHTSCG
T ss_pred ccccCccc-cc-----hhhhcCCeEEEEeCHHhccCc
Confidence 99965321 11 111111245667788877654
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=87.58 E-value=3 Score=43.13 Aligned_cols=126 Identities=11% Similarity=0.045 Sum_probs=73.5
Q ss_pred cHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc------CCCceecccccccc-------c-eeeeecCCCc
Q psy13453 50 AYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS------NGPLKVGGVLRRVY-------S-SCLVPRGQKS 115 (764)
Q Consensus 50 D~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~------~~wlHVDa~l~~~y-------~-s~ll~rd~~~ 115 (764)
|+++++++|++++ .++..-.++-++..+-||+++++ ++.+=||.....++ + -+++..--++
T Consensus 133 d~~~~~~~i~~~t-----~lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~~vvvDnT~atP~~~~Pl~~GaDiVvhS~TKy 207 (394)
T d1e5ea_ 133 IPGEVKKHMKPNT-----KIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKY 207 (394)
T ss_dssp STTHHHHHCCTTE-----EEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTT
T ss_pred CHHHHHHhhcccc-----cEEEEeccCCcceeeehhhhhhhccccccCeEEEecCcccCcccCCchhcCCCEEEechhhh
Confidence 5567888877643 35557777777888777775443 45567786432111 1 2333332232
Q ss_pred cccc-------cccccc------cCCcccCCCCcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeC
Q psy13453 116 LRTT-------VLFHFL------FQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVC 182 (764)
Q Consensus 116 l~~~-------~s~~~d------~~d~tle~SRr~~ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~ 182 (764)
+.+. .....+ ...+.-..+-..+..-.|..++ |.+-+..+++++.++|..+++.|+++|.++-+.
T Consensus 208 ~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G~~lsp~~a~ll~r--gl~TL~lRm~r~~~nA~~lA~~L~~hp~V~~V~ 285 (394)
T d1e5ea_ 208 INGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITR--GLSTLNIRMKAESENAMKVAEYLKSHPAVEKVY 285 (394)
T ss_dssp TTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEE
T ss_pred cCCCcccccccccchhhHHHHHHHHHHHHhhCCCCChHHHHHHHh--hchhHHHHHHHHHHHHHHHHHHHhhcCCccEEe
Confidence 2221 000000 0011111233344556675544 788999999999999999999999999986554
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=86.07 E-value=1.2 Score=45.23 Aligned_cols=223 Identities=12% Similarity=0.068 Sum_probs=123.5
Q ss_pred eeeHHHHHhhcCCCCCCeEEecCCCCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchhhhc-----CCCce
Q psy13453 21 IYESFKATHSLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVS-----NGPLK 95 (764)
Q Consensus 21 ~YSv~KAa~~LGl~~~~v~~Vpvd~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~ia~-----~~wlH 95 (764)
.-++.-|....|..+ +.|.+|+++.++..++++++.+.+ - |...+...|..-+++++.+ ++++-
T Consensus 83 ~~a~~~ai~~~G~~p---v~vDi~~~~~~~~~~~~~~~~~~t------~--avi~vh~~G~~~~~~~i~~~~~~~~i~lI 151 (371)
T d2fnua1 83 FVATANMLLESGYTP---VFAGIKNDGNIDELALEKLINERT------K--AIVSVDYAGKSVEVESVQKLCKKHSLSFL 151 (371)
T ss_dssp CTHHHHHHHHTTCEE---EECCBCTTSSBCGGGSGGGCCTTE------E--EEEEECGGGCCCCHHHHHHHHHHHTCEEE
T ss_pred ccccceeeeccCccc---ccccccccccccchhhhhhccchh------h--ccccccccccccccccccccccccchhhc
Confidence 345667788888888 888888888888888887776532 1 3334467787777777654 88888
Q ss_pred ecccccc--c--------------------------cceeeeecCCCcccccccc--c---cc-cC--Cc-ccCCCCccc
Q psy13453 96 VGGVLRR--V--------------------------YSSCLVPRGQKSLRTTVLF--H---FL-FQ--HW-QIPLGRRFR 138 (764)
Q Consensus 96 VDa~l~~--~--------------------------y~s~ll~rd~~~l~~~~s~--~---~d-~~--d~-tle~SRr~~ 138 (764)
.|++... . -+++++..+++........ + .. .. ++ .+...-|..
T Consensus 152 EDaaqa~Ga~~~~~~~G~~g~~~~~Sf~~~K~l~~g~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~s 231 (371)
T d2fnua1 152 SDSSHALGSEYQNKKVGGFALASVFSFHAIKPITTAEGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLN 231 (371)
T ss_dssp EECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCC
T ss_pred cchhhccCceeccccCCccccccccccccccccccccceEEEeechhhhhhccccccccccccccccccccccccccccc
Confidence 8885311 0 0134444433221111000 0 00 00 01 111222333
Q ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHH-H
Q psy13453 139 ALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLN-K 217 (764)
Q Consensus 139 ALklWatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n-~ 217 (764)
-+..=..+.. .+.+.+.+++-.+.++++.+.+++.+.+.++.++.-...++...|--.. .....+ .
T Consensus 232 el~Aaigl~q--L~~l~~~~~~R~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~-----------~~~~~~r~ 298 (371)
T d2fnua1 232 EIQSALGLSQ--LKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMH-----------QKFFTCKK 298 (371)
T ss_dssp HHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEEC-----------GGGGGGHH
T ss_pred chhhhhhhhh--hhhccchhhhhhhhhhhhccccccccccccccccccccccccccccccc-----------ccchhHHH
Confidence 3332222222 2447788889999999999999999998887543322222111110000 001112 4
Q ss_pred HHHHHHHhcCcEEE-Eecee-----------CC---------eeEEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13453 218 AVYDRIIARKVIYI-VKGSF-----------QD---------RLFMRFAICSSQTEESDVQLGWNEIRTATE 268 (764)
Q Consensus 218 ~L~~~L~~~G~~~v-s~t~l-----------~g---------~~~LRi~v~np~Tt~e~i~~~l~~l~~~~~ 268 (764)
++.+.|.++|.-.- ....+ .+ ...|.+ =++|..+.++++.+++.|.+..+
T Consensus 299 ~~~~~L~~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~L-P~~~~lt~~di~~I~~~i~~~~~ 369 (371)
T d2fnua1 299 LILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISL-PCHANLNLESVQNIAHSVLKTFE 369 (371)
T ss_dssp HHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEE-CCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCcceeCcccccCHHHHhccccCCCHHHHHHHhCeEEC-cCCCCCCHHHHHHHHHHHHHHHH
Confidence 67888888885210 00011 01 234554 36899999999999999988754
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=80.71 E-value=3.7 Score=41.07 Aligned_cols=211 Identities=11% Similarity=0.046 Sum_probs=105.6
Q ss_pred eeHHHHHhhcCCCCCCeEEecCC--CCCcccHHHHHHHHHHHhhCCCCcEEEEeeCCcccccccCchh---hhc-----C
Q psy13453 22 YESFKATHSLSGTPDQVRLSGLP--DSEWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNA---PVS-----N 91 (764)
Q Consensus 22 YSv~KAa~~LGl~~~~v~~Vpvd--~~~rmD~~aLe~~I~~~~~~G~~p~~VatAGTT~~G~iDpi~~---ia~-----~ 91 (764)
+.....+...|... ..++++ ..+.+|.+.++....+. +.+++-+-++-+||.+=+.++ +++ +
T Consensus 123 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~ 194 (375)
T d1o4sa_ 123 VSYIPQIILAGGTV---NVVETFMSKNFQPSLEEVEGLLVGK-----TKAVLINSPNNPTGVVYRREFLEGLVRLAKKRN 194 (375)
T ss_dssp TTHHHHHHHTTCEE---EEEECCGGGTTCCCHHHHHHTCCTT-----EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred ccchhhhhcccccc---ccccccccccccchhHHHHHhhccC-----ccEEEEeCCCCCccCCCCHHHHHHHHHhHHHcC
Confidence 34455666777666 777776 46688888888765542 335567788999999855544 333 7
Q ss_pred CCceecccccccc-----ceee-eecCCCccccccccccccCCcccCCCC-----------------------cccHHHH
Q psy13453 92 GPLKVGGVLRRVY-----SSCL-VPRGQKSLRTTVLFHFLFQHWQIPLGR-----------------------RFRALKL 142 (764)
Q Consensus 92 ~wlHVDa~l~~~y-----~s~l-l~rd~~~l~~~~s~~~d~~d~tle~SR-----------------------r~~ALkl 142 (764)
+|+=.|......+ ...+ +.....-.....+.+ -.+++.|-| ....+..
T Consensus 195 ~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~S---K~~~l~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (375)
T d1o4sa_ 195 FYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFS---KSHSMTGWRVGYLISSEKVATAVSKIQSHTTSCINTVAQ 271 (375)
T ss_dssp CEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEEST---TTTTCGGGCCEEEECCHHHHHHHHHHHHHHTCSCCHHHH
T ss_pred CceehHhhhccccccccccccccccCCCCCEEEEeech---hhccCCccccccccccccchhhhhhhhccccccccccch
Confidence 7775555321110 0000 000000000000000 001111111 0111111
Q ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCceeEEEEeeccccccccccccCccCCccHHHHHHHHH
Q psy13453 143 WMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDR 222 (764)
Q Consensus 143 WatL~~lG~eGy~~~i~~~i~lA~~l~~~I~~~p~~ell~~P~l~iV~Fry~P~~~~~~~~~~~~~~~~~d~~n~~L~~~ 222 (764)
......+ .+-.....+...+..+.+.+.+++. ++++ .+|+-+...|--.| . + ..++..+
T Consensus 272 ~~~~~~~-~~~~~~~~~~~~~r~~~~~~~l~~~-g~~~-~~p~gg~f~~~~~~---------------~-~--~~~~~~~ 330 (375)
T d1o4sa_ 272 YAALKAL-EVDNSYMVQTFKERKNFVVERLKKM-GVKF-VEPEGAFYLFFKVR---------------G-D--DVKFCER 330 (375)
T ss_dssp HHHHHHT-TCCCHHHHHHHHHHHHHHHHHHHHT-TCCC-CCCSBSSEEEEECS---------------S-C--HHHHHHH
T ss_pred hhhhhhc-ccchhhhHHHHHHHHHHHHHHHHhc-CceE-ecCCccEEEEEECC---------------C-C--HHHHHHH
Confidence 1111111 1112223334444556677777764 7775 45665554442111 1 1 1234444
Q ss_pred -HHhcCcEEEEeceeCCeeEEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13453 223 -IIARKVIYIVKGSFQDRLFMRFAICSSQTEESDVQLGWNEIRTAT 267 (764)
Q Consensus 223 -L~~~G~~~vs~t~l~g~~~LRi~v~np~Tt~e~i~~~l~~l~~~~ 267 (764)
+.+.|.++........+.++|++++ +.++.+++.++.|+++.
T Consensus 331 ll~~~gV~v~pG~~F~~~g~iRis~~---~~~e~l~~al~rl~~~l 373 (375)
T d1o4sa_ 331 LLEEKKVALVPGSAFLKPGFVRLSFA---TSIERLTEALDRIEDFL 373 (375)
T ss_dssp HHHHHCEECEEGGGGTCTTEEEEECC---SCHHHHHHHHHHHHHHH
T ss_pred HHHhCCEEEEEccccCCCCeEEEEEc---CCHHHHHHHHHHHHHHh
Confidence 4456887776665555668999986 36788888888887653
|