Psyllid ID: psy13459
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 542 | 2.2.26 [Sep-21-2011] | |||||||
| P17971 | 571 | Potassium voltage-gated c | no | N/A | 0.904 | 0.858 | 0.872 | 0.0 | |
| Q63881 | 630 | Potassium voltage-gated c | yes | N/A | 0.887 | 0.763 | 0.663 | 0.0 | |
| Q8HYZ1 | 630 | Potassium voltage-gated c | N/A | N/A | 0.887 | 0.763 | 0.663 | 0.0 | |
| Q9Z0V2 | 630 | Potassium voltage-gated c | yes | N/A | 0.887 | 0.763 | 0.661 | 0.0 | |
| Q9NZV8 | 630 | Potassium voltage-gated c | no | N/A | 0.887 | 0.763 | 0.661 | 0.0 | |
| Q62897 | 655 | Potassium voltage-gated c | no | N/A | 0.892 | 0.738 | 0.653 | 0.0 | |
| P59995 | 630 | Potassium voltage-gated c | yes | N/A | 0.887 | 0.763 | 0.661 | 0.0 | |
| Q9Z0V1 | 655 | Potassium voltage-gated c | no | N/A | 0.892 | 0.738 | 0.653 | 0.0 | |
| Q9UK17 | 655 | Potassium voltage-gated c | yes | N/A | 0.892 | 0.738 | 0.653 | 0.0 | |
| Q9TTT5 | 655 | Potassium voltage-gated c | no | N/A | 0.892 | 0.738 | 0.653 | 0.0 |
| >sp|P17971|KCNAL_DROME Potassium voltage-gated channel protein Shal OS=Drosophila melanogaster GN=Shal PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 946 bits (2445), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/541 (87%), Positives = 486/541 (89%), Gaps = 51/541 (9%)
Query: 1 MASVAAWLPFARAAAIGWVPIATHPLPPPPIPKDRRKADDEKLLINVSGRRFETWRNTLE 60
MASVAAWLPFARAAAIGWVPIATHPLPPPP+PKDRRK DDEKLLINVSGRRFETWRNTLE
Sbjct: 1 MASVAAWLPFARAAAIGWVPIATHPLPPPPMPKDRRKTDDEKLLINVSGRRFETWRNTLE 60
Query: 61 KYPDSLLGSNEREFFYDEDSKEYFFDRDPDIFRHILNYYRTGKLHYPKHECLTSYDEELA 120
KYPD+LLGSNEREFFYDED KEYFFDRDPDIFRHILNYYRTGKLHYPKHECLTSYDEELA
Sbjct: 61 KYPDTLLGSNEREFFYDEDCKEYFFDRDPDIFRHILNYYRTGKLHYPKHECLTSYDEELA 120
Query: 121 FFGILPDVIGDCCYEDYRDRKRENAERLMDDKLSENGDQNLPQLTNIRQKMWRAFENPHT 180
FFGI+PDVIGDCCYEDYRDRKRENAERLMDDKLSENGDQNL QLTN+RQKMWRAFENPHT
Sbjct: 121 FFGIMPDVIGDCCYEDYRDRKRENAERLMDDKLSENGDQNLQQLTNMRQKMWRAFENPHT 180
Query: 181 STAALVFYYVTGFFIAVSVMANVVETVPCGHRPGRAGSLPCGERYKIVFFCLDTACVMIF 240
ST+ALVFYYVTGFFIAVSVMANVVETVPCGHRPGRAG+LPCGERYKIVFFCLDTACVMIF
Sbjct: 181 STSALVFYYVTGFFIAVSVMANVVETVPCGHRPGRAGTLPCGERYKIVFFCLDTACVMIF 240
Query: 241 TAEYLLRLFAAPDRCKFVRSVMSIIDVVAILPYYIGLGITDNDDVSGAFVTLRVFRVFRI 300
TAEYLLRLFAAPDRCKFVRSVMSIIDVVAI+PYYIGLGITDNDDVSGAFVTLRVFRVFRI
Sbjct: 241 TAEYLLRLFAAPDRCKFVRSVMSIIDVVAIMPYYIGLGITDNDDVSGAFVTLRVFRVFRI 300
Query: 301 FKFSRHSQGLRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAA 360
FKFSRHSQGLRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNV+GTNFTSIPAA
Sbjct: 301 FKFSRHSQGLRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNVNGTNFTSIPAA 360
Query: 361 FWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRAD 420
FWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRAD
Sbjct: 361 FWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRAD 420
Query: 421 KRKAQRDREFVELEVPYNGQAKRPGSPSPLLSPSHSVISTANIFQSCCGRCCGQRYQKAR 480
KRKAQR KAR
Sbjct: 421 KRKAQR---------------------------------------------------KAR 429
Query: 481 LARIRIAKASSGAAFVSKKKAAEARMAAQESGLEIDENYREEDIFEIQHHHLLRCLEKTT 540
LARIRIAKASSGAAFVSKKKAAEAR AAQESG+E+D+NYR+EDIFE+QHHHLLRCLEKTT
Sbjct: 430 LARIRIAKASSGAAFVSKKKAAEARWAAQESGIELDDNYRDEDIFELQHHHLLRCLEKTT 489
Query: 541 N 541
+
Sbjct: 490 D 490
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Mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient. May play a role in the nervous system and in the regulation of beating frequency in pacemaker cells. Drosophila melanogaster (taxid: 7227) |
| >sp|Q63881|KCND2_RAT Potassium voltage-gated channel subfamily D member 2 OS=Rattus norvegicus GN=Kcnd2 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8HYZ1|KCND2_MUSPF Potassium voltage-gated channel subfamily D member 2 OS=Mustela putorius furo GN=KCND2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9Z0V2|KCND2_MOUSE Potassium voltage-gated channel subfamily D member 2 OS=Mus musculus GN=Kcnd2 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9NZV8|KCND2_HUMAN Potassium voltage-gated channel subfamily D member 2 OS=Homo sapiens GN=KCND2 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q62897|KCND3_RAT Potassium voltage-gated channel subfamily D member 3 OS=Rattus norvegicus GN=Kcnd3 PE=1 SV=2 | Back alignment and function description |
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| >sp|P59995|KCND2_RABIT Potassium voltage-gated channel subfamily D member 2 OS=Oryctolagus cuniculus GN=KCND2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9Z0V1|KCND3_MOUSE Potassium voltage-gated channel subfamily D member 3 OS=Mus musculus GN=Kcnd3 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9UK17|KCND3_HUMAN Potassium voltage-gated channel subfamily D member 3 OS=Homo sapiens GN=KCND3 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q9TTT5|KCND3_RABIT Potassium voltage-gated channel subfamily D member 3 OS=Oryctolagus cuniculus GN=KCND3 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 542 | ||||||
| 328710152 | 646 | PREDICTED: potassium voltage-gated chann | 0.902 | 0.756 | 0.881 | 0.0 | |
| 328710150 | 697 | PREDICTED: potassium voltage-gated chann | 0.904 | 0.703 | 0.879 | 0.0 | |
| 442633394 | 520 | shaker cognate l, isoform C [Drosophila | 0.902 | 0.940 | 0.874 | 0.0 | |
| 195022791 | 571 | GH14392 [Drosophila grimshawi] gi|193899 | 0.904 | 0.858 | 0.874 | 0.0 | |
| 17737641 | 490 | shaker cognate l, isoform A [Drosophila | 0.902 | 0.997 | 0.874 | 0.0 | |
| 194751491 | 571 | GF10727 [Drosophila ananassae] gi|190625 | 0.904 | 0.858 | 0.874 | 0.0 | |
| 195377525 | 571 | GJ11877 [Drosophila virilis] gi|19415469 | 0.904 | 0.858 | 0.874 | 0.0 | |
| 195128043 | 571 | GI13516 [Drosophila mojavensis] gi|19392 | 0.904 | 0.858 | 0.874 | 0.0 | |
| 161084970 | 571 | shaker cognate l, isoform B [Drosophila | 0.904 | 0.858 | 0.872 | 0.0 | |
| 195435664 | 571 | GK19427 [Drosophila willistoni] gi|19416 | 0.904 | 0.858 | 0.872 | 0.0 |
| >gi|328710152|ref|XP_003244180.1| PREDICTED: potassium voltage-gated channel protein Shal-like isoform 2 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 954 bits (2466), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/540 (88%), Positives = 484/540 (89%), Gaps = 51/540 (9%)
Query: 1 MASVAAWLPFARAAAIGWVPIATHPLPPPPIPKDRRKADDEKLLINVSGRRFETWRNTLE 60
MASVAAWLPFARAAAIGWVPIATHPLPPPP+PKDRR+ DDEKLLINVSGRRFETWRNT+E
Sbjct: 1 MASVAAWLPFARAAAIGWVPIATHPLPPPPVPKDRRRIDDEKLLINVSGRRFETWRNTVE 60
Query: 61 KYPDSLLGSNEREFFYDEDSKEYFFDRDPDIFRHILNYYRTGKLHYPKHECLTSYDEELA 120
KYPD+LLGSNEREFFYDED KEYFFDRDPDIFRHILNYYRTGKLHYPKHECLTSYDEELA
Sbjct: 61 KYPDTLLGSNEREFFYDEDCKEYFFDRDPDIFRHILNYYRTGKLHYPKHECLTSYDEELA 120
Query: 121 FFGILPDVIGDCCYEDYRDRKRENAERLMDDKLSENGDQNLPQLTNIRQKMWRAFENPHT 180
FFGILPDVIGDCCYEDYRDRKRENAERLMDDKLSENGDQNLPQLTNIRQKMWRAF NPHT
Sbjct: 121 FFGILPDVIGDCCYEDYRDRKRENAERLMDDKLSENGDQNLPQLTNIRQKMWRAFGNPHT 180
Query: 181 STAALVFYYVTGFFIAVSVMANVVETVPCGHRPGRAGSLPCGERYKIVFFCLDTACVMIF 240
STAALVFYYVTGFFIAVSVMANVVETVPCGHRPGR G+LPCGERYKIVFFCLDTACVMIF
Sbjct: 181 STAALVFYYVTGFFIAVSVMANVVETVPCGHRPGRVGTLPCGERYKIVFFCLDTACVMIF 240
Query: 241 TAEYLLRLFAAPDRCKFVRSVMSIIDVVAILPYYIGLGITDNDDVSGAFVTLRVFRVFRI 300
T EYLLRLFAAPDRCKF+RSVMSIIDVVAILPYYIGLGITDNDDVSGAFVTLRVFRVFRI
Sbjct: 241 TTEYLLRLFAAPDRCKFMRSVMSIIDVVAILPYYIGLGITDNDDVSGAFVTLRVFRVFRI 300
Query: 301 FKFSRHSQGLRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAA 360
FKFSRHSQGLRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAA
Sbjct: 301 FKFSRHSQGLRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAA 360
Query: 361 FWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRAD 420
FWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRAD
Sbjct: 361 FWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRAD 420
Query: 421 KRKAQRDREFVELEVPYNGQAKRPGSPSPLLSPSHSVISTANIFQSCCGRCCGQRYQKAR 480
KRKAQR KAR
Sbjct: 421 KRKAQR---------------------------------------------------KAR 429
Query: 481 LARIRIAKASSGAAFVSKKKAAEARMAAQESGLEIDENYREEDIFEIQHHHLLRCLEKTT 540
LARIRIAKASSGAAFVSKKKAAEARMAAQESGLE+DENYREEDIFE+QHHHLLRCLEKTT
Sbjct: 430 LARIRIAKASSGAAFVSKKKAAEARMAAQESGLELDENYREEDIFELQHHHLLRCLEKTT 489
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Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328710150|ref|XP_001943883.2| PREDICTED: potassium voltage-gated channel protein Shal-like isoform 1 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
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| >gi|442633394|ref|NP_001262055.1| shaker cognate l, isoform C [Drosophila melanogaster] gi|440216013|gb|AGB94748.1| shaker cognate l, isoform C [Drosophila melanogaster] | Back alignment and taxonomy information |
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| >gi|195022791|ref|XP_001985642.1| GH14392 [Drosophila grimshawi] gi|193899124|gb|EDV97990.1| GH14392 [Drosophila grimshawi] | Back alignment and taxonomy information |
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| >gi|17737641|ref|NP_524159.1| shaker cognate l, isoform A [Drosophila melanogaster] gi|194874163|ref|XP_001973352.1| GG13395 [Drosophila erecta] gi|195354194|ref|XP_002043584.1| GM17707 [Drosophila sechellia] gi|158457|gb|AAA28895.1| Sha12 protein [Drosophila melanogaster] gi|23093124|gb|AAF49144.2| shaker cognate l, isoform A [Drosophila melanogaster] gi|85857458|gb|ABC86265.1| RE45089p [Drosophila melanogaster] gi|190655135|gb|EDV52378.1| GG13395 [Drosophila erecta] gi|194127752|gb|EDW49795.1| GM17707 [Drosophila sechellia] | Back alignment and taxonomy information |
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| >gi|194751491|ref|XP_001958060.1| GF10727 [Drosophila ananassae] gi|190625342|gb|EDV40866.1| GF10727 [Drosophila ananassae] | Back alignment and taxonomy information |
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| >gi|195377525|ref|XP_002047539.1| GJ11877 [Drosophila virilis] gi|194154697|gb|EDW69881.1| GJ11877 [Drosophila virilis] | Back alignment and taxonomy information |
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| >gi|195128043|ref|XP_002008476.1| GI13516 [Drosophila mojavensis] gi|193920085|gb|EDW18952.1| GI13516 [Drosophila mojavensis] | Back alignment and taxonomy information |
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| >gi|161084970|ref|NP_001097646.1| shaker cognate l, isoform B [Drosophila melanogaster] gi|384872493|sp|P17971.2|KCNAL_DROME RecName: Full=Potassium voltage-gated channel protein Shal; AltName: Full=Shaker cognate l; AltName: Full=Shal2 gi|158028587|gb|ABW08570.1| shaker cognate l, isoform B [Drosophila melanogaster] | Back alignment and taxonomy information |
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| >gi|195435664|ref|XP_002065799.1| GK19427 [Drosophila willistoni] gi|194161884|gb|EDW76785.1| GK19427 [Drosophila willistoni] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 542 | ||||||
| FB|FBgn0005564 | 571 | Shal "Shaker cognate l" [Droso | 0.802 | 0.761 | 0.889 | 3.6e-233 | |
| UNIPROTKB|E9PSN1 | 611 | Kcnd3 "Potassium voltage-gated | 0.804 | 0.713 | 0.711 | 3.1e-179 | |
| UNIPROTKB|F1MY95 | 655 | KCND3 "Uncharacterized protein | 0.804 | 0.665 | 0.711 | 1e-178 | |
| RGD|68394 | 655 | Kcnd3 "potassium voltage-gated | 0.804 | 0.665 | 0.711 | 1.3e-178 | |
| UNIPROTKB|Q9UK17 | 655 | KCND3 "Potassium voltage-gated | 0.804 | 0.665 | 0.711 | 1.7e-178 | |
| UNIPROTKB|F1PXH7 | 655 | KCND3 "Uncharacterized protein | 0.804 | 0.665 | 0.713 | 2.1e-178 | |
| MGI|MGI:1928743 | 655 | Kcnd3 "potassium voltage-gated | 0.804 | 0.665 | 0.711 | 2.1e-178 | |
| UNIPROTKB|F1MVI5 | 630 | KCND2 "Uncharacterized protein | 0.808 | 0.695 | 0.707 | 2.7e-178 | |
| MGI|MGI:102663 | 630 | Kcnd2 "potassium voltage-gated | 0.808 | 0.695 | 0.707 | 2.7e-178 | |
| RGD|68393 | 630 | Kcnd2 "potassium voltage-gated | 0.808 | 0.695 | 0.707 | 2.7e-178 |
| FB|FBgn0005564 Shal "Shaker cognate l" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 2031 (720.0 bits), Expect = 3.6e-233, Sum P(2) = 3.6e-233
Identities = 387/435 (88%), Positives = 396/435 (91%)
Query: 1 MASVAAWLPFARAAAIGWVPIATHXXXXXXXXKDRRKADDEKLLINVSGRRFETWRNTLE 60
MASVAAWLPFARAAAIGWVPIATH KDRRK DDEKLLINVSGRRFETWRNTLE
Sbjct: 1 MASVAAWLPFARAAAIGWVPIATHPLPPPPMPKDRRKTDDEKLLINVSGRRFETWRNTLE 60
Query: 61 KYPDSLLGSNEREFFYDEDSKEYFFDRDPDIFRHILNYYRTGKLHYPKHECLTSYDEELA 120
KYPD+LLGSNEREFFYDED KEYFFDRDPDIFRHILNYYRTGKLHYPKHECLTSYDEELA
Sbjct: 61 KYPDTLLGSNEREFFYDEDCKEYFFDRDPDIFRHILNYYRTGKLHYPKHECLTSYDEELA 120
Query: 121 FFGILPDVIGDCCYEDYRDRKRENAERLMDDKLSENGDQNLPQLTNIRQKMWRAFENPHT 180
FFGI+PDVIGDCCYEDYRDRKRENAERLMDDKLSENGDQNL QLTN+RQKMWRAFENPHT
Sbjct: 121 FFGIMPDVIGDCCYEDYRDRKRENAERLMDDKLSENGDQNLQQLTNMRQKMWRAFENPHT 180
Query: 181 STAALVFYYVTGFFIAVSVMANVVETVPCGHRPGRAGSLPCGERYKIVFFCLDTACVMIF 240
ST+ALVFYYVTGFFIAVSVMANVVETVPCGHRPGRAG+LPCGERYKIVFFCLDTACVMIF
Sbjct: 181 STSALVFYYVTGFFIAVSVMANVVETVPCGHRPGRAGTLPCGERYKIVFFCLDTACVMIF 240
Query: 241 TAEYLLRLFAAPDRCKFVRSVMSIIDVVAILPYYIGLGITDNDDVSGAFVTLRVFRVFRI 300
TAEYLLRLFAAPDRCKFVRSVMSIIDVVAI+PYYIGLGITDNDDVSGAFVTLRVFRVFRI
Sbjct: 241 TAEYLLRLFAAPDRCKFVRSVMSIIDVVAIMPYYIGLGITDNDDVSGAFVTLRVFRVFRI 300
Query: 301 FKFSRHSQGLRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAA 360
FKFSRHSQGLRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNV+GTNFTSIPAA
Sbjct: 301 FKFSRHSQGLRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNVNGTNFTSIPAA 360
Query: 361 FWYTIVTMTTLGYGDMVPETIAGKIXXXXXXXXXXXXXXXXXXXXXSNFSRIYHQNQRAD 420
FWYTIVTMTTLGYGDMVPETIAGKI SNFSRIYHQNQRAD
Sbjct: 361 FWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRAD 420
Query: 421 KRKAQRDREFVELEV 435
KRKAQR + +
Sbjct: 421 KRKAQRKARLARIRI 435
|
|
| UNIPROTKB|E9PSN1 Kcnd3 "Potassium voltage-gated channel subfamily D member 3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1MY95 KCND3 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| RGD|68394 Kcnd3 "potassium voltage-gated channel, Shal-related subfamily, member 3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9UK17 KCND3 "Potassium voltage-gated channel subfamily D member 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1PXH7 KCND3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1928743 Kcnd3 "potassium voltage-gated channel, Shal-related family, member 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1MVI5 KCND2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:102663 Kcnd2 "potassium voltage-gated channel, Shal-related family, member 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| RGD|68393 Kcnd2 "potassium voltage-gated channel, Shal-related subfamily, member 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q63881 | KCND2_RAT | No assigned EC number | 0.6636 | 0.8874 | 0.7634 | yes | N/A |
| P59995 | KCND2_RABIT | No assigned EC number | 0.6617 | 0.8874 | 0.7634 | yes | N/A |
| Q9Z0V2 | KCND2_MOUSE | No assigned EC number | 0.6617 | 0.8874 | 0.7634 | yes | N/A |
| Q9UK17 | KCND3_HUMAN | No assigned EC number | 0.6537 | 0.8929 | 0.7389 | yes | N/A |
| P17971 | KCNAL_DROME | No assigned EC number | 0.8724 | 0.9040 | 0.8581 | no | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 542 | |||
| pfam02214 | 92 | pfam02214, K_tetra, K+ channel tetramerisation dom | 3e-39 | |
| pfam00520 | 194 | pfam00520, Ion_trans, Ion transport protein | 2e-36 | |
| smart00225 | 97 | smart00225, BTB, Broad-Complex, Tramtrack and Bric | 6e-20 | |
| pfam11879 | 104 | pfam11879, DUF3399, Domain of unknown function (DU | 1e-15 | |
| pfam07885 | 74 | pfam07885, Ion_trans_2, Ion channel | 6e-14 | |
| pfam11601 | 26 | pfam11601, Shal-type, Shal-type voltage-gated pota | 4e-12 | |
| PRK10537 | 393 | PRK10537, PRK10537, voltage-gated potassium channe | 2e-08 | |
| COG1226 | 212 | COG1226, Kch, Kef-type K+ transport systems, predi | 3e-05 |
| >gnl|CDD|202161 pfam02214, K_tetra, K+ channel tetramerisation domain | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 3e-39
Identities = 47/92 (51%), Positives = 63/92 (68%), Gaps = 2/92 (2%)
Query: 43 LLINVSGRRFETWRNTLEKYPDSLLGSNERE-FFYDEDSKEYFFDRDPDIFRHILNYYRT 101
+ +NV G+RFET ++TL ++PD+LLG + FYD+D+ EYFFDR P F ILN+YRT
Sbjct: 1 VRLNVGGKRFETSKSTLTRFPDTLLGRLLKRCDFYDDDTNEYFFDRSPKHFETILNFYRT 60
Query: 102 -GKLHYPKHECLTSYDEELAFFGILPDVIGDC 132
GKLH P+ CL S+ EEL F+G+ I C
Sbjct: 61 GGKLHRPEEVCLDSFLEELEFYGLGELAIELC 92
|
The N-terminal, cytoplasmic tetramerisation domain (T1) of voltage-gated K+ channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels. It is distantly related to the BTB/POZ domain pfam00651. Length = 92 |
| >gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein | Back alignment and domain information |
|---|
| >gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac | Back alignment and domain information |
|---|
| >gnl|CDD|221286 pfam11879, DUF3399, Domain of unknown function (DUF3399) | Back alignment and domain information |
|---|
| >gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel | Back alignment and domain information |
|---|
| >gnl|CDD|152037 pfam11601, Shal-type, Shal-type voltage-gated potassium channels | Back alignment and domain information |
|---|
| >gnl|CDD|236711 PRK10537, PRK10537, voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224147 COG1226, Kch, Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 542 | |||
| KOG4390|consensus | 632 | 100.0 | ||
| KOG3713|consensus | 477 | 100.0 | ||
| KOG1545|consensus | 507 | 100.0 | ||
| KOG1420|consensus | 1103 | 100.0 | ||
| KOG1419|consensus | 654 | 99.98 | ||
| PLN03192 | 823 | Voltage-dependent potassium channel; Provisional | 99.92 | |
| PF02214 | 94 | BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi | 99.91 | |
| KOG0498|consensus | 727 | 99.85 | ||
| KOG2302|consensus | 1956 | 99.81 | ||
| KOG2301|consensus | 1592 | 99.81 | ||
| PF00520 | 200 | Ion_trans: Ion transport protein calcium channel s | 99.8 | |
| KOG0501|consensus | 971 | 99.78 | ||
| KOG2714|consensus | 465 | 99.77 | ||
| KOG2301|consensus | 1592 | 99.75 | ||
| KOG2715|consensus | 210 | 99.74 | ||
| KOG2716|consensus | 230 | 99.73 | ||
| KOG2302|consensus | 1956 | 99.67 | ||
| KOG1665|consensus | 302 | 99.66 | ||
| KOG2723|consensus | 221 | 99.65 | ||
| KOG3193|consensus | 1087 | 99.64 | ||
| KOG0500|consensus | 536 | 99.59 | ||
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 99.48 | |
| PF07885 | 79 | Ion_trans_2: Ion channel; InterPro: IPR013099 This | 99.41 | |
| PF11601 | 28 | Shal-type: Shal-type voltage-gated potassium chann | 99.4 | |
| KOG0499|consensus | 815 | 99.39 | ||
| PLN03223 | 1634 | Polycystin cation channel protein; Provisional | 99.19 | |
| PF11879 | 104 | DUF3399: Domain of unknown function (DUF3399); Int | 99.13 | |
| KOG4404|consensus | 350 | 98.67 | ||
| PF08016 | 425 | PKD_channel: Polycystin cation channel; InterPro: | 98.6 | |
| KOG3684|consensus | 489 | 98.47 | ||
| KOG3840|consensus | 438 | 98.39 | ||
| KOG3599|consensus | 798 | 98.36 | ||
| PF01007 | 336 | IRK: Inward rectifier potassium channel; InterPro: | 98.36 | |
| TIGR00870 | 743 | trp transient-receptor-potential calcium channel p | 98.35 | |
| KOG1418|consensus | 433 | 98.26 | ||
| smart00225 | 90 | BTB Broad-Complex, Tramtrack and Bric a brac. Doma | 98.19 | |
| KOG4404|consensus | 350 | 97.69 | ||
| KOG3614|consensus | 1381 | 97.65 | ||
| KOG0510|consensus | 929 | 97.49 | ||
| KOG1418|consensus | 433 | 97.2 | ||
| KOG3609|consensus | 822 | 97.17 | ||
| KOG3676|consensus | 782 | 96.9 | ||
| KOG3827|consensus | 400 | 96.87 | ||
| KOG3533|consensus | 2706 | 96.55 | ||
| PF00060 | 148 | Lig_chan: Ligand-gated ion channel; InterPro: IPR0 | 92.4 | |
| PLN03223 | 1634 | Polycystin cation channel protein; Provisional | 87.08 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 87.01 |
| >KOG4390|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-125 Score=919.70 Aligned_cols=486 Identities=77% Similarity=1.278 Sum_probs=460.0
Q ss_pred cccccccchhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeCCeEEEeeHHHHhcCCCCccccCCCCCccCCCCc
Q psy13459 2 ASVAAWLPFARAAAIGWVPIATHPLPPPPIPKDRRKADDEKLLINVSGRRFETWRNTLEKYPDSLLGSNEREFFYDEDSK 81 (542)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~~~~~~~~ 81 (542)
|||||||||||||||||+|++++|||++|. ...+..|+.+.|||+|+||+||+.||.|||||+||+.+++.+||+++|
T Consensus 3 agvAaWLPFARAAAiGW~Pva~~PmP~aP~--~~~~r~De~lvlNvSGrRFeTWknTLeryPdTLLGSsEkeFFy~~dt~ 80 (632)
T KOG4390|consen 3 AGVAAWLPFARAAAIGWMPVAQQPMPPAPG--VKAKRQDELLVLNVSGRRFETWKNTLERYPDTLLGSSEKEFFYDEDTG 80 (632)
T ss_pred chhhhhchhhHhhhccceecccCCCCCCch--hhhhccCcEEEEeccccchhHHHhHHHhCchhhhCCcchheeecCCcc
Confidence 569999999999999999999999999884 555668999999999999999999999999999999999999999999
Q ss_pred eEEEecCCcchHHhhcccccCcccCCCCCCHHHHHHHHhhcCCCCccccccccchhhhhhhhhHHhhhhcccccCCCC-C
Q psy13459 82 EYFFDRDPDIFRHILNYYRTGKLHYPKHECLTSYDEELAFFGILPDVIGDCCYEDYRDRKRENAERLMDDKLSENGDQ-N 160 (542)
Q Consensus 82 ~~f~DRd~~~F~~Il~~~r~g~l~~p~~~~~~~~~~E~~f~~l~~~~~~~cC~e~~~~~~~e~~~~~~~~~~~e~~~~-~ 160 (542)
||||||||++||+|||||||||||+|+..|+..+.||+.||||-++.+++||+|+|.++|+||+|++.||+..|+... .
T Consensus 81 eYFFDRDPdiFRhvLnFYRTGkLHyPR~ECi~AyDeELaF~Gl~PeligDCCyEeYkDrkrENaERL~dd~~~e~ag~~~ 160 (632)
T KOG4390|consen 81 EYFFDRDPDIFRHVLNFYRTGKLHYPRHECISAYDEELAFYGLVPELIGDCCYEEYKDRKRENAERLQDDEDAENAGGPA 160 (632)
T ss_pred cccccCChHHHHHHHHHhhcCcccCchHHHHHHhhhhhhHhcccHHHHhhhhhHHHhhhhhhhHHHhhchhhhhhcCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998877666533 3
Q ss_pred CchhhHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHhhhheeeecccCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHH
Q psy13459 161 LPQLTNIRQKMWRAFENPHTSTAALVFYYVTGFFIAVSVMANVVETVPCGHRPGRAGSLPCGERYKIVFFCLDTACVMIF 240 (542)
Q Consensus 161 ~~~~~~~r~~l~~~le~P~ss~~a~~f~~~~~~lI~ls~i~~~~et~~~~~~~~~~~~~~~~~~~~~~l~~~e~v~~~iF 240 (542)
.+....+|+++|+.+|||++|..+.+|++++.++|.+|++..++||+|+...++.....+|++.|...++.+|++|+.+|
T Consensus 161 ~p~~ls~rq~mWrAFENPHTst~ALVFYYVtGFFIAVSVi~NvVETiPCg~~~~~~~e~pCGEry~~aFFclDTACVmIF 240 (632)
T KOG4390|consen 161 LPAGLSLRQRMWRAFENPHTSTAALVFYYVTGFFIAVSVIANVVETIPCGGSPGRSKELPCGERYPVAFFCLDTACVMIF 240 (632)
T ss_pred CcccchHHHHHHHHhcCCCcchhhhhhhhhhhhhhhhhhhhceeeecccCCCCCCceecccccccceeeEEecceeEEEe
Confidence 44457899999999999999999999999999999999999999999999888877889999999999999999999999
Q ss_pred HHHHHHHHhhCccchhhhccccchhhhhhhcccceeeccccCCchhhhHHHHHHHHHHHHHHhhhhccchhhhhhhhhcc
Q psy13459 241 TAEYLLRLFAAPDRCKFVRSVMSIIDVVAILPYYIGLGITDNDDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSC 320 (542)
Q Consensus 241 ~~E~~lr~~~a~~~~~y~~s~~ni~Dli~iip~~i~~~~~~~~~~~~~l~~lR~lRllRilkl~r~~~~l~~l~~~l~~s 320 (542)
+.||+||+++|+++.+|+++.+.+||+++|+|+|+++++..+.++++++..||++|++||||+.||++++|+|+++|+++
T Consensus 241 T~EYlLRL~aAPsR~rF~RSvMSiIDVvAIlPYYigLv~t~N~DVSGaFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSC 320 (632)
T KOG4390|consen 241 TGEYLLRLFAAPSRYRFLRSVMSIIDVVAILPYYIGLVMTDNEDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSC 320 (632)
T ss_pred eHHHHHHHHcCchHHHHHHHHHHHHHHhhhhhhheEEEecCCccccceeEEEEeeeeeeeeeecccccccchhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCccchhhhHHHhhhhccccCCCCcccchhhHHHHHHHHHHHHHHHH
Q psy13459 321 ASELGFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIAL 400 (542)
Q Consensus 321 ~~~l~~ll~~l~~~i~ifa~l~~~~e~~~~~~~f~s~~~a~y~a~vTltTVGYGDi~p~t~~~~i~~~~~~i~g~~~~al 400 (542)
..+++++++.+.+.++|||.++||.|++.+.++|+++|.|||++++||||.||||++|.|.+|++|+.+|.+.|++++++
T Consensus 321 ASELGFLlFSLtMAIIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIAL 400 (632)
T KOG4390|consen 321 ASELGFLLFSLTMAIIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIAL 400 (632)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhhccccccccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcccCCCCCCCCCCCCCCCCCCCccccccccccccccCcccCccchHHH
Q psy13459 401 PVPVIVSNFSRIYHQNQRADKRKAQRDREFVELEVPYNGQAKRPGSPSPLLSPSHSVISTANIFQSCCGRCCGQRYQKAR 480 (542)
Q Consensus 401 ~i~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~Gs~~~~~~ 480 (542)
++++|++||+++|+++|+..|+.+|+ +++
T Consensus 401 PVPvIVSNFSRIYHQNQRADKRrAQk---------------------------------------------------KaR 429 (632)
T KOG4390|consen 401 PVPVIVSNFSRIYHQNQRADKRRAQK---------------------------------------------------KAR 429 (632)
T ss_pred cccEEEechhHHHhhhhhhhHHHHHH---------------------------------------------------Hhh
Confidence 99999999999999999998887776 788
Q ss_pred HHHHHHHhcccceeecccchhhHHHHHHhhcCcccccccCCCChhHHhhhhhhhhhhhccC
Q psy13459 481 LARIRIAKASSGAAFVSKKKAAEARMAAQESGLEIDENYREEDIFEIQHHHLLRCLEKTTN 541 (542)
Q Consensus 481 l~Rvr~~~a~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~qhhhll~cle~tt~ 541 (542)
|+|+|+.+..+...+.+++.++...+..+ ...+.....|+.+++|.||||||||||||||
T Consensus 430 LARIR~aKsgs~nA~~~~Krng~l~~~~~-~~~e~~~~~r~~s~fE~QHHHLLhCLEKtT~ 489 (632)
T KOG4390|consen 430 LARIRLAKSGSTNAYLQSKRNGLLEDSLS-GEHEQALCVRNRSAFEQQHHHLLHCLEKTTN 489 (632)
T ss_pred hhheeehhcccchHHHhhhhcchhhhhhc-cchhHHhhhcchhHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999987653333 2345557889999999999999999999996
|
|
| >KOG3713|consensus | Back alignment and domain information |
|---|
| >KOG1545|consensus | Back alignment and domain information |
|---|
| >KOG1420|consensus | Back alignment and domain information |
|---|
| >KOG1419|consensus | Back alignment and domain information |
|---|
| >PLN03192 Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
| >PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] | Back alignment and domain information |
|---|
| >KOG0498|consensus | Back alignment and domain information |
|---|
| >KOG2302|consensus | Back alignment and domain information |
|---|
| >KOG2301|consensus | Back alignment and domain information |
|---|
| >PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins | Back alignment and domain information |
|---|
| >KOG0501|consensus | Back alignment and domain information |
|---|
| >KOG2714|consensus | Back alignment and domain information |
|---|
| >KOG2301|consensus | Back alignment and domain information |
|---|
| >KOG2715|consensus | Back alignment and domain information |
|---|
| >KOG2716|consensus | Back alignment and domain information |
|---|
| >KOG2302|consensus | Back alignment and domain information |
|---|
| >KOG1665|consensus | Back alignment and domain information |
|---|
| >KOG2723|consensus | Back alignment and domain information |
|---|
| >KOG3193|consensus | Back alignment and domain information |
|---|
| >KOG0500|consensus | Back alignment and domain information |
|---|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
| >PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] | Back alignment and domain information |
|---|
| >PF11601 Shal-type: Shal-type voltage-gated potassium channels ; InterPro: IPR021645 This family of proteins represents Shal-type voltage-gated potassium channels which interact with Kv channel-interacting proteins to modulate cell surface expression and function of Kv4 channels | Back alignment and domain information |
|---|
| >KOG0499|consensus | Back alignment and domain information |
|---|
| >PLN03223 Polycystin cation channel protein; Provisional | Back alignment and domain information |
|---|
| >PF11879 DUF3399: Domain of unknown function (DUF3399); InterPro: IPR024587 Potassium channels are the most diverse group of the ion channel family [, ] | Back alignment and domain information |
|---|
| >KOG4404|consensus | Back alignment and domain information |
|---|
| >PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys | Back alignment and domain information |
|---|
| >KOG3684|consensus | Back alignment and domain information |
|---|
| >KOG3840|consensus | Back alignment and domain information |
|---|
| >KOG3599|consensus | Back alignment and domain information |
|---|
| >PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] | Back alignment and domain information |
|---|
| >TIGR00870 trp transient-receptor-potential calcium channel protein | Back alignment and domain information |
|---|
| >KOG1418|consensus | Back alignment and domain information |
|---|
| >smart00225 BTB Broad-Complex, Tramtrack and Bric a brac | Back alignment and domain information |
|---|
| >KOG4404|consensus | Back alignment and domain information |
|---|
| >KOG3614|consensus | Back alignment and domain information |
|---|
| >KOG0510|consensus | Back alignment and domain information |
|---|
| >KOG1418|consensus | Back alignment and domain information |
|---|
| >KOG3609|consensus | Back alignment and domain information |
|---|
| >KOG3676|consensus | Back alignment and domain information |
|---|
| >KOG3827|consensus | Back alignment and domain information |
|---|
| >KOG3533|consensus | Back alignment and domain information |
|---|
| >PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory | Back alignment and domain information |
|---|
| >PLN03223 Polycystin cation channel protein; Provisional | Back alignment and domain information |
|---|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 542 | ||||
| 2r9r_B | 514 | Shaker Family Voltage Dependent Potassium Channel ( | 1e-61 | ||
| 3lnm_B | 514 | F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Chan | 6e-61 | ||
| 3lut_B | 499 | A Structural Model For The Full-Length Shaker Potas | 9e-61 | ||
| 2a79_B | 499 | Mammalian Shaker Kv1.2 Potassium Channel- Beta Subu | 1e-60 | ||
| 2i2r_A | 144 | Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX Len | 5e-58 | ||
| 2nz0_B | 140 | Crystal Structure Of Potassium Channel Kv4.3 In Com | 8e-58 | ||
| 1s1g_A | 124 | Crystal Structure Of Kv4.3 T1 Domain Length = 124 | 8e-48 | ||
| 1nn7_A | 105 | Crystal Structure Of The Tetramerization Domain Of | 3e-46 | ||
| 3kvt_A | 115 | Tetramerization Domain From Akv3.1 (shaw-subfamily) | 1e-17 | ||
| 1eoe_A | 100 | Crystal Structure Of The V135r Mutant Of A Shaker T | 2e-12 | ||
| 1t1d_A | 100 | Crystal Structure Of The Tetramerization Domain Of | 6e-12 | ||
| 1eof_A | 100 | Crystal Structure Of The N136a Mutant Of A Shaker T | 1e-11 | ||
| 1eod_A | 100 | Crystal Structure Of The N136d Mutant Of A Shaker T | 1e-11 | ||
| 1a68_A | 95 | Crystal Structure Of The Tetramerization Domain Of | 2e-11 | ||
| 1exb_E | 103 | Structure Of The Cytoplasmic Beta Subunit-T1 Assemb | 5e-10 | ||
| 1qdw_A | 87 | N-Terminal Domain, Voltage-Gated Potassium Channel | 7e-10 | ||
| 1qdv_A | 99 | N-Terminal Domain, Voltage-Gated Potassium Channel | 1e-09 | ||
| 1dsx_A | 87 | Kv1.2 T1 Domain, Residues 33-119, T46v Mutant Lengt | 2e-09 | ||
| 3beh_A | 355 | Structure Of A Bacterial Cyclic Nucleotide Regulate | 3e-07 | ||
| 1s6c_B | 30 | Crystal Structure Of The Complex Between Kchip1 And | 3e-05 | ||
| 1f6g_A | 160 | Potassium Channel (Kcsa) Full-Length Fold Length = | 6e-05 | ||
| 3or7_C | 103 | On The Structural Basis Of Modal Gating Behavior In | 6e-05 | ||
| 2a0l_A | 241 | Crystal Structure Of Kvap-33h1 Fv Complex Length = | 7e-05 | ||
| 3ogc_C | 131 | Kcsa E71a Variant In Presence Of Na+ Length = 131 | 9e-05 | ||
| 4h33_A | 137 | Crystal Structure Of A Voltage-gated K+ Channel Por | 1e-04 | ||
| 2atk_C | 124 | Structure Of A Mutant Kcsa K+ Channel Length = 124 | 1e-04 | ||
| 1zwi_C | 103 | Structure Of Mutant Kcsa Potassium Channel Length = | 1e-04 | ||
| 3stz_C | 102 | Kcsa Potassium Channel Mutant Y82c With Nitroxide S | 1e-04 | ||
| 3stl_C | 103 | Kcsa Potassium Channel Mutant Y82c With Cadmium Bou | 1e-04 | ||
| 3pjs_K | 166 | Mechanism Of Activation Gating In The Full-Length K | 2e-04 | ||
| 1orq_C | 223 | X-Ray Structure Of A Voltage-Dependent Potassium Ch | 2e-04 | ||
| 3ifx_A | 129 | Crystal Structure Of The Spin-Labeled Kcsa Mutant V | 2e-04 | ||
| 2p7t_C | 103 | Crystal Structure Of Kcsa Mutant Length = 103 | 2e-04 | ||
| 2a9h_A | 155 | Nmr Structural Studies Of A Potassium Channel Chary | 2e-04 | ||
| 3eff_K | 139 | The Crystal Structure Of Full-Length Kcsa In Its Cl | 2e-04 | ||
| 3or6_C | 103 | On The Structural Basis Of Modal Gating Behavior In | 2e-04 | ||
| 1jvm_A | 125 | Kcsa Potassium Channel With Tba (Tetrabutylammonium | 3e-04 | ||
| 3f5w_C | 104 | Kcsa Potassium Channel In The Open-Inactivated Stat | 3e-04 | ||
| 2jk5_C | 124 | Potassium Channel Kcsa In Complex With Tetrabutylam | 3e-04 | ||
| 2nlj_C | 124 | Potassium Channel Kcsa(M96v)-Fab Complex In Kcl Len | 3e-04 | ||
| 2hjf_C | 103 | Potassium Channel Kcsa-Fab Complex With Tetrabutyla | 3e-04 | ||
| 1j95_A | 125 | Kcsa Potassium Channel With Tba (Tetrabutylammonium | 3e-04 | ||
| 1k4d_C | 124 | Potassium Channel Kcsa-Fab Complex In Low Concentra | 3e-04 | ||
| 1bl8_A | 97 | Potassium Channel (Kcsa) From Streptomyces Lividans | 3e-04 | ||
| 3hpl_C | 124 | Kcsa E71h-F103a Mutant In The Closed State Length = | 3e-04 | ||
| 3drz_A | 107 | X-Ray Crystal Structure Of The N-Terminal Btb Domai | 5e-04 | ||
| 1s5h_C | 124 | Potassium Channel Kcsa-Fab Complex T75c Mutant In K | 8e-04 |
| >pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel (Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With Beta Subunit Length = 514 | Back alignment and structure |
|
| >pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel Length = 514 | Back alignment and structure |
| >pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium Channel Kv1.2 Length = 499 | Back alignment and structure |
| >pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit Complex Length = 499 | Back alignment and structure |
| >pdb|2I2R|A Chain A, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX Length = 144 | Back alignment and structure |
| >pdb|2NZ0|B Chain B, Crystal Structure Of Potassium Channel Kv4.3 In Complex With Its Regulatory Subunit Kchip1 (Casp Target) Length = 140 | Back alignment and structure |
| >pdb|1S1G|A Chain A, Crystal Structure Of Kv4.3 T1 Domain Length = 124 | Back alignment and structure |
| >pdb|1NN7|A Chain A, Crystal Structure Of The Tetramerization Domain Of The Shal Voltage- Gated Potassium Channel Length = 105 | Back alignment and structure |
| >pdb|3KVT|A Chain A, Tetramerization Domain From Akv3.1 (shaw-subfamily) Voltage-gated Potassium Channel Length = 115 | Back alignment and structure |
| >pdb|1EOE|A Chain A, Crystal Structure Of The V135r Mutant Of A Shaker T1 Domain Length = 100 | Back alignment and structure |
| >pdb|1T1D|A Chain A, Crystal Structure Of The Tetramerization Domain Of The Shaker Potassium Channel Length = 100 | Back alignment and structure |
| >pdb|1EOF|A Chain A, Crystal Structure Of The N136a Mutant Of A Shaker T1 Domain Length = 100 | Back alignment and structure |
| >pdb|1EOD|A Chain A, Crystal Structure Of The N136d Mutant Of A Shaker T1 Domain Length = 100 | Back alignment and structure |
| >pdb|1A68|A Chain A, Crystal Structure Of The Tetramerization Domain Of The Shaker Potassium Channel Length = 95 | Back alignment and structure |
| >pdb|1EXB|E Chain E, Structure Of The Cytoplasmic Beta Subunit-T1 Assembly Of Voltage-Dependent K Channels Length = 103 | Back alignment and structure |
| >pdb|1QDW|A Chain A, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2 Residues 33-119 Length = 87 | Back alignment and structure |
| >pdb|1QDV|A Chain A, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2 Residues 33-131 Length = 99 | Back alignment and structure |
| >pdb|1DSX|A Chain A, Kv1.2 T1 Domain, Residues 33-119, T46v Mutant Length = 87 | Back alignment and structure |
| >pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion Channel Length = 355 | Back alignment and structure |
| >pdb|1S6C|B Chain B, Crystal Structure Of The Complex Between Kchip1 And Kv4.2 N1-30 Length = 30 | Back alignment and structure |
| >pdb|1F6G|A Chain A, Potassium Channel (Kcsa) Full-Length Fold Length = 160 | Back alignment and structure |
| >pdb|3OR7|C Chain C, On The Structural Basis Of Modal Gating Behavior In K+channels - E71i Length = 103 | Back alignment and structure |
| >pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex Length = 241 | Back alignment and structure |
| >pdb|3OGC|C Chain C, Kcsa E71a Variant In Presence Of Na+ Length = 131 | Back alignment and structure |
| >pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore Module In A Closed State In Lipid Membranes, Tetragonal Crystal Form Length = 137 | Back alignment and structure |
| >pdb|2ATK|C Chain C, Structure Of A Mutant Kcsa K+ Channel Length = 124 | Back alignment and structure |
| >pdb|1ZWI|C Chain C, Structure Of Mutant Kcsa Potassium Channel Length = 103 | Back alignment and structure |
| >pdb|3STZ|C Chain C, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin Label Length = 102 | Back alignment and structure |
| >pdb|3STL|C Chain C, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound Length = 103 | Back alignment and structure |
| >pdb|3PJS|K Chain K, Mechanism Of Activation Gating In The Full-Length Kcsa K+ Channel Length = 166 | Back alignment and structure |
| >pdb|1ORQ|C Chain C, X-Ray Structure Of A Voltage-Dependent Potassium Channel In Complex With An Fab Length = 223 | Back alignment and structure |
| >pdb|3IFX|A Chain A, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1 Length = 129 | Back alignment and structure |
| >pdb|2P7T|C Chain C, Crystal Structure Of Kcsa Mutant Length = 103 | Back alignment and structure |
| >pdb|2A9H|A Chain A, Nmr Structural Studies Of A Potassium Channel Charybdotoxin Complex Length = 155 | Back alignment and structure |
| >pdb|3EFF|K Chain K, The Crystal Structure Of Full-Length Kcsa In Its Closed Conformation Length = 139 | Back alignment and structure |
| >pdb|3OR6|C Chain C, On The Structural Basis Of Modal Gating Behavior In K+channels - E71q Length = 103 | Back alignment and structure |
| >pdb|1JVM|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And Rubidium Length = 125 | Back alignment and structure |
| >pdb|3F5W|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With 32 A Opening At T112 Length = 104 | Back alignment and structure |
| >pdb|2JK5|C Chain C, Potassium Channel Kcsa In Complex With Tetrabutylammonium In High K Length = 124 | Back alignment and structure |
| >pdb|2NLJ|C Chain C, Potassium Channel Kcsa(M96v)-Fab Complex In Kcl Length = 124 | Back alignment and structure |
| >pdb|2HJF|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetrabutylammonium (Tba) Length = 103 | Back alignment and structure |
| >pdb|1J95|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And Potassium Length = 125 | Back alignment and structure |
| >pdb|1K4D|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of K+ Length = 124 | Back alignment and structure |
| >pdb|1BL8|A Chain A, Potassium Channel (Kcsa) From Streptomyces Lividans Length = 97 | Back alignment and structure |
| >pdb|3HPL|C Chain C, Kcsa E71h-F103a Mutant In The Closed State Length = 124 | Back alignment and structure |
| >pdb|3DRZ|A Chain A, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of Human Kctd5 Protein Length = 107 | Back alignment and structure |
| >pdb|1S5H|C Chain C, Potassium Channel Kcsa-Fab Complex T75c Mutant In K+ Length = 124 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Length = 514 | Back alignment and structure |
|---|
Score = 485 bits (1249), Expect = e-168
Identities = 157/483 (32%), Positives = 251/483 (51%), Gaps = 47/483 (9%)
Query: 4 VAAWLPFARAAAIGWVPIATHPLPPPPIPKDRRKADDEKLLINVSGRRFETWRNTLEKYP 63
VA P AAA+ P T+ E+++IN+SG RFET TL ++P
Sbjct: 22 VATGDPVDEAAALPGHPQDTYDPEA-------DHESSERVVINISGLRFETQLKTLAQFP 74
Query: 64 DSLLGS-NEREFFYDEDSKEYFFDRDPDIFRHILNYYRTG-KLHYPKHECLTSYDEELAF 121
++LLG +R ++D EYFFDR+ F IL YY++G +L P + L + EE+ F
Sbjct: 75 ETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRF 134
Query: 122 FGILPDVIGDCCYEDYRDRKRENAERLMDDKLSENGDQNLPQLTNIRQKMWRAFENPHTS 181
+ + + + ++ ++ E L EN ++++W FE P +S
Sbjct: 135 YELGEEAMEMFREDEGYIKEEE-------RPLPEN---------EFQRQVWLLFEYPESS 178
Query: 182 TAALVFYYVTGFFIAVSVMANVVETVPCGHRPGRAG---------------SLPCGERYK 226
A + V+ I +S+++ +ET+P +
Sbjct: 179 GPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFT 238
Query: 227 IVFFCLDTACVMIFTAEYLLRLFAAPDRCKFVRSVMSIIDVVAILPYYIGLGITDND--- 283
FF ++T C++ F+ E+L+R FA P + F ++M+IID+VAI+PYY+ + +T+++
Sbjct: 239 DPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSV 298
Query: 284 ----DVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLVFSLAMAIIIFA 339
+V R+ R+ RIFK SRHS+GL+ILG TLK+ ELG L+F L + +I+F+
Sbjct: 299 LQFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFS 358
Query: 340 TVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIA 399
+ +++AE + + F SIP AFW+ +V+MTT+GYGDMVP TI GKIVG +C+++GVL IA
Sbjct: 359 SAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIA 418
Query: 400 LPVPVIVSNFSRIYHQNQRADKRKAQRDREFVELEVPYNGQAKRPGSPSPLLSPSHSVIS 459
LPVPVIVSNF+ YH+ +++ K + + S +
Sbjct: 419 LPVPVIVSNFNYFYHRETEGEEQAQYLQVTSSPKIPSSPDLKKSRSASTISKSDYMEIQE 478
Query: 460 TAN 462
N
Sbjct: 479 GVN 481
|
| >3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355 | Back alignment and structure |
|---|
| >1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Length = 223 | Back alignment and structure |
|---|
| >2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Length = 140 | Back alignment and structure |
|---|
| >2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Length = 155 | Back alignment and structure |
|---|
| >1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Length = 124 | Back alignment and structure |
|---|
| >3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Length = 166 | Back alignment and structure |
|---|
| >2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Length = 122 | Back alignment and structure |
|---|
| >1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Length = 105 | Back alignment and structure |
|---|
| >3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Length = 115 | Back alignment and structure |
|---|
| >3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Length = 139 | Back alignment and structure |
|---|
| >2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Length = 103 | Back alignment and structure |
|---|
| >3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Length = 202 | Back alignment and structure |
|---|
| >1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Length = 100 | Back alignment and structure |
|---|
| >3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Length = 107 | Back alignment and structure |
|---|
| >2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Length = 321 | Back alignment and structure |
|---|
| >1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Length = 333 | Back alignment and structure |
|---|
| >1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Length = 301 | Back alignment and structure |
|---|
| >2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix} Length = 147 | Back alignment and structure |
|---|
| >1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1 Length = 132 | Back alignment and structure |
|---|
| >3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 3r65_A 3ous_A 3ldd_A Length = 82 | Back alignment and structure |
|---|
| >3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 3rw0_A* Length = 285 | Back alignment and structure |
|---|
| >3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Length = 148 | Back alignment and structure |
|---|
| >4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Length = 229 | Back alignment and structure |
|---|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Length = 336 | Back alignment and structure |
|---|
| >2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Length = 114 | Back alignment and structure |
|---|
| >3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Length = 97 | Back alignment and structure |
|---|
| >1s6c_B Potassium voltage-gated channel subfamily D membe; EF-hand, transport protein; 2.00A {Rattus norvegicus} Length = 30 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Length = 343 | Back alignment and structure |
|---|
| >3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Length = 340 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 542 | |||
| 2r9r_B | 514 | Paddle chimera voltage gated potassium channel KV; | 100.0 | |
| 2nz0_B | 140 | Potassium voltage-gated channel subfamily D membe; | 100.0 | |
| 3rvy_A | 285 | ION transport protein; tetrameric ION channel, vol | 100.0 | |
| 3kvt_A | 115 | Potassium channel protein SHAW; tetramerization do | 100.0 | |
| 1s1g_A | 124 | Potassium voltage-gated channel subfamily D membe; | 100.0 | |
| 1orq_C | 223 | Potassium channel; voltage-dependent, KVAP, FAB co | 100.0 | |
| 1nn7_A | 105 | Potassium channel KV4.2; teteramerization domain, | 100.0 | |
| 3beh_A | 355 | MLL3241 protein; transmembrane protein, membrane p | 99.98 | |
| 1t1d_A | 100 | Protein (potassium channel KV1.1); potassium chann | 99.97 | |
| 4dxw_A | 229 | Navrh, ION transport protein; tetrameric, voltage- | 99.96 | |
| 3drz_A | 107 | BTB/POZ domain-containing protein KCTD5; potassium | 99.94 | |
| 3drx_A | 202 | BTB/POZ domain-containing protein KCTD5; golgi, gr | 99.93 | |
| 2a9h_A | 155 | Voltage-gated potassium channel; potassium channel | 99.89 | |
| 2ih3_C | 122 | Voltage-gated potassium channel; ION channel D-ami | 99.84 | |
| 1ors_C | 132 | Potassium channel; voltage-dependent, voltage sens | 99.79 | |
| 3eff_K | 139 | Voltage-gated potassium channel; FULL length KCSA, | 99.71 | |
| 2k1e_A | 103 | Water soluble analogue of potassium channel, KCSA; | 99.7 | |
| 4h33_A | 137 | LMO2059 protein; bilayers, KVLM, lipidic cubic pha | 99.66 | |
| 2kyh_A | 147 | KVAP, voltage-gated potassium channel; ION channel | 99.66 | |
| 3pjs_K | 166 | KCSA, voltage-gated potassium channel; ION channel | 99.58 | |
| 3vou_A | 148 | ION transport 2 domain protein, voltage-gated SOD | 99.56 | |
| 2q67_A | 114 | Potassium channel protein; inverted teepee, helix | 99.53 | |
| 3ldc_A | 82 | Calcium-gated potassium channel MTHK; transmembran | 99.51 | |
| 3ouf_A | 97 | Potassium channel protein; ION channel, membrane, | 99.5 | |
| 1xl4_A | 301 | Inward rectifier potassium channel; integral membr | 99.48 | |
| 1p7b_A | 333 | Integral membrane channel and cytosolic domains; t | 99.47 | |
| 2qks_A | 321 | KIR3.1-prokaryotic KIR channel chimera; G-protein | 99.43 | |
| 3um7_A | 309 | Potassium channel subfamily K member 4; potassium | 99.23 | |
| 3ukm_A | 280 | Potassium channel subfamily K member 1; membrane p | 99.21 | |
| 3um7_A | 309 | Potassium channel subfamily K member 4; potassium | 99.21 | |
| 3sya_A | 340 | G protein-activated inward rectifier potassium CH; | 99.2 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 99.19 | |
| 3spc_A | 343 | Inward-rectifier K+ channel KIR2.2; PIP, membrane | 99.12 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 99.11 | |
| 3ukm_A | 280 | Potassium channel subfamily K member 1; membrane p | 99.07 | |
| 1s6c_B | 30 | Potassium voltage-gated channel subfamily D membe; | 98.78 | |
| 4f4l_A | 112 | ION transport protein; alpha helical membrane prot | 98.59 | |
| 3m5b_A | 119 | Zinc finger and BTB domain-containing protein 32; | 96.06 | |
| 1r29_A | 127 | B-cell lymphoma 6 protein; BTB domain, transcripti | 95.75 | |
| 3ga1_A | 129 | Nucleus accumbens-associated protein 1; BTB/POZ do | 95.55 | |
| 2vpk_A | 116 | Myoneurin; transcription regulation, transcription | 95.26 | |
| 3ohu_A | 125 | Transcription regulator protein BACH2; BTB/POZ dom | 95.11 | |
| 2ihc_A | 124 | Transcription regulator protein BACH1; BRIC-A-BRAC | 94.85 | |
| 2if5_A | 120 | Zinc finger and BTB domain-containing protein 7A; | 94.72 | |
| 2vkp_A | 109 | BTB/POZ domain-containing protein 6; protein-bindi | 94.71 | |
| 3b84_A | 119 | Zinc finger and BTB domain-containing protein 48; | 94.42 | |
| 2yy9_A | 135 | Zinc finger and BTB domain-containing protein 48; | 94.12 | |
| 2z8h_A | 138 | Transcription regulator protein BACH1; BTB, POZ, d | 93.85 | |
| 2ppi_A | 144 | Gigaxonin; BTB domain, protein degradation, struct | 93.71 | |
| 4eoz_A | 145 | Speckle-type POZ protein; E3 ubiquitin ligase, nuc | 93.68 | |
| 3htm_A | 172 | Speckle-type POZ protein; BTB, SPOP, ubiquitin, li | 93.64 | |
| 1buo_A | 121 | POZ domain, protein (promyelocytic leukemia zinc f | 93.22 | |
| 3fkc_A | 116 | Transcriptional regulator kaiso; zinc finger and B | 93.06 | |
| 2q81_A | 119 | MIZ-1 protein; BTB/POZ domain, transcription; HET: | 93.03 | |
| 3kg2_A | 823 | Glutamate receptor 2; ION channel, membrane protei | 93.01 | |
| 4hpf_A | 722 | Potassium channel subfamily U member 1; PH-gated, | 92.08 | |
| 3hve_A | 256 | Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis | 91.9 | |
| 2r9r_B | 514 | Paddle chimera voltage gated potassium channel KV; | 91.43 | |
| 3i3n_A | 279 | Kelch-like protein 11; structural genomics, BTB, K | 91.32 | |
| 3hqi_A | 312 | Speckle-type POZ protein; SPOP, ubiquitin, puckere | 88.63 | |
| 2lcm_A | 28 | Voltage-dependent N-type calcium channel subunit; | 88.47 | |
| 3rvy_A | 285 | ION transport protein; tetrameric ION channel, vol | 88.09 | |
| 3mt5_A | 726 | Potassium large conductance calcium-activated CHA | 82.12 | |
| 4dxw_A | 229 | Navrh, ION transport protein; tetrameric, voltage- | 80.88 |
| >2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-70 Score=593.33 Aligned_cols=366 Identities=39% Similarity=0.770 Sum_probs=313.3
Q ss_pred CCCCCceEEEEeCCeEEEeeHHHHhcCCCCccccCC-CCCccCCCCceEEEecCCcchHHhhccccc-CcccCCCCCCHH
Q psy13459 36 RKADDEKLLINVSGRRFETWRNTLEKYPDSLLGSNE-REFFYDEDSKEYFFDRDPDIFRHILNYYRT-GKLHYPKHECLT 113 (542)
Q Consensus 36 ~~~~~~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~-~~~~~~~~~~~~f~DRd~~~F~~Il~~~r~-g~l~~p~~~~~~ 113 (542)
.+..+++|+|||||++|+|+++||+++|+|+||++. +..+|++++|||||||||++|++||||||+ |+|++|+++|.+
T Consensus 47 ~~~~~~~v~lNVgG~~f~t~~~tL~~~p~s~l~~~~~~~~~~~~~~~~~f~DR~~~~F~~IL~~~r~~g~l~~p~~~~~~ 126 (514)
T 2r9r_B 47 DHESSERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLD 126 (514)
T ss_dssp ----CCEEEEEETTEEEEEEHHHHTTSTTSTTTCHHHHGGGEETTTTEEEECSCHHHHHHHHHHHHHTSCCCCCTTSCHH
T ss_pred cCCCCCEEEEEeCCEEEEecHHHHhcCCCCcccccccCCcccCCCCCCEEEcCChHHHHHHHHHHhcCCccccCCcccHH
Confidence 455678999999999999999999999999999974 456899999999999999999999999999 999999999999
Q ss_pred HHHHHHhhcCCCCccccccccchhhhhhhhhHHhhhhcccccCCCCCCchhhHHHHHHHhhhcCCCCchhHHHHHHHHHH
Q psy13459 114 SYDEELAFFGILPDVIGDCCYEDYRDRKRENAERLMDDKLSENGDQNLPQLTNIRQKMWRAFENPHTSTAALVFYYVTGF 193 (542)
Q Consensus 114 ~~~~E~~f~~l~~~~~~~cC~e~~~~~~~e~~~~~~~~~~~e~~~~~~~~~~~~r~~l~~~le~P~ss~~a~~f~~~~~~ 193 (542)
.|.+||+||||.++.++. +.+. |... .++....+++++|+++|.++++|.||..+++|++++++
T Consensus 127 ~~~~E~~f~~i~~~~~~~-----~~~~-----e~~~------~~~~~~~p~~~~r~~lw~l~e~p~sS~~a~~f~~~~i~ 190 (514)
T 2r9r_B 127 IFSEEIRFYELGEEAMEM-----FRED-----EGYI------KEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVM 190 (514)
T ss_dssp HHHHHHHHTTCCHHHHHH-----HHHH-----TTCC------CCCCCCCCSCSSHHHHHHTTTCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHhh-----hhhh-----hhcc------ccccccCchHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 999999999998776543 2211 0110 11112245678999999999999999999999999999
Q ss_pred HHHHhhhheeeecccCCCCCCCC-C--------------CCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhCccchhhh
Q psy13459 194 FIAVSVMANVVETVPCGHRPGRA-G--------------SLPCGERYKIVFFCLDTACVMIFTAEYLLRLFAAPDRCKFV 258 (542)
Q Consensus 194 lI~ls~i~~~~et~~~~~~~~~~-~--------------~~~~~~~~~~~l~~~e~v~~~iF~~E~~lr~~~a~~~~~y~ 258 (542)
+|++|++++|++|+|+++..... + ..++...+..++.++|++|+++|++|+++|+++++.+++|+
T Consensus 191 ~Illsii~~~leT~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~i~~~iFtiE~ilR~~~~~~k~~Y~ 270 (514)
T 2r9r_B 191 VILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACPSKAGFF 270 (514)
T ss_dssp HHHHHHHHHHHTTCHHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHSSCSSSST
T ss_pred HHHHHHHHhhhhccccccccccccccccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 99999999999999875322100 0 01123446678999999999999999999999999999999
Q ss_pred ccccchhhhhhhcccceeeccccCC-------chhhhHHHHHHHHHHHHHHhhhhccchhhhhhhhhccchhhHHHHHHH
Q psy13459 259 RSVMSIIDVVAILPYYIGLGITDND-------DVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLVFSL 331 (542)
Q Consensus 259 ~s~~ni~Dli~iip~~i~~~~~~~~-------~~~~~l~~lR~lRllRilkl~r~~~~l~~l~~~l~~s~~~l~~ll~~l 331 (542)
+++||++|+++++|+++.+...... .....++++|++|++|++|+.+++++++.+..++..+.+.++.+++++
T Consensus 271 ks~wniiDli~iip~~i~l~~~~~~~~~~~~~~~~~~lrvlRllRvlRilkL~r~~~~l~~l~~tl~~s~~~l~~ll~~l 350 (514)
T 2r9r_B 271 TNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFL 350 (514)
T ss_dssp TSHHHHHHHHTTHHHHHHHHHHHTSCSHHHHHTTHHHHHHHHHHGGGGGGGGGGSCHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hchhHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999877653211 124568889999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHhhhhccCCCCCCCCccchhhhHHHhhhhccccCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13459 332 AMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSR 411 (542)
Q Consensus 332 ~~~i~ifa~l~~~~e~~~~~~~f~s~~~a~y~a~vTltTVGYGDi~p~t~~~~i~~~~~~i~g~~~~al~i~~i~~~f~~ 411 (542)
++++++||+++|+.|+..++.+|.+|++|+||+++|||||||||++|.|+.|++++++++++|++++|+++++|+++|+.
T Consensus 351 ~i~~~if~~~~~~~e~~~~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~ 430 (514)
T 2r9r_B 351 FIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNY 430 (514)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHhhhheeeccCCCccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHH
Q psy13459 412 IYHQNQ 417 (542)
Q Consensus 412 ~~~~~~ 417 (542)
.+++++
T Consensus 431 ~~~~~~ 436 (514)
T 2r9r_B 431 FYHRET 436 (514)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 876443
|
| >2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A | Back alignment and structure |
|---|
| >3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* | Back alignment and structure |
|---|
| >3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 | Back alignment and structure |
|---|
| >1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 | Back alignment and structure |
|---|
| >1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A | Back alignment and structure |
|---|
| >1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 | Back alignment and structure |
|---|
| >3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* | Back alignment and structure |
|---|
| >1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A | Back alignment and structure |
|---|
| >4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} | Back alignment and structure |
|---|
| >3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A | Back alignment and structure |
|---|
| >2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 | Back alignment and structure |
|---|
| >2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... | Back alignment and structure |
|---|
| >1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1 | Back alignment and structure |
|---|
| >3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} | Back alignment and structure |
|---|
| >2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A | Back alignment and structure |
|---|
| >4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A | Back alignment and structure |
|---|
| >2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix} | Back alignment and structure |
|---|
| >3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A | Back alignment and structure |
|---|
| >3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} | Back alignment and structure |
|---|
| >2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A | Back alignment and structure |
|---|
| >3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A | Back alignment and structure |
|---|
| >3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A | Back alignment and structure |
|---|
| >1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* | Back alignment and structure |
|---|
| >1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* | Back alignment and structure |
|---|
| >2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} | Back alignment and structure |
|---|
| >3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* | Back alignment and structure |
|---|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
| >3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* | Back alignment and structure |
|---|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
| >3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >1s6c_B Potassium voltage-gated channel subfamily D membe; EF-hand, transport protein; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
| >4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus} | Back alignment and structure |
|---|
| >3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 | Back alignment and structure |
|---|
| >1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A | Back alignment and structure |
|---|
| >3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A | Back alignment and structure |
|---|
| >2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} | Back alignment and structure |
|---|
| >2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A | Back alignment and structure |
|---|
| >2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} | Back alignment and structure |
|---|
| >3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} | Back alignment and structure |
|---|
| >2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} | Back alignment and structure |
|---|
| >2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} | Back alignment and structure |
|---|
| >2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
| >4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
| >3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A | Back alignment and structure |
|---|
| >3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A | Back alignment and structure |
|---|
| >2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A | Back alignment and structure |
|---|
| >3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} | Back alignment and structure |
|---|
| >4hpf_A Potassium channel subfamily U member 1; PH-gated, membrane protein, transport Pro; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B | Back alignment and structure |
|---|
| >2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* | Back alignment and structure |
|---|
| >3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A | Back alignment and structure |
|---|
| >3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A | Back alignment and structure |
|---|
| >2lcm_A Voltage-dependent N-type calcium channel subunit; voltage sensor peptide, membrane protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* | Back alignment and structure |
|---|
| >3mt5_A Potassium large conductance calcium-activated CHA subfamily M, alpha member 1; potassium channel, membrane protein, transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A | Back alignment and structure |
|---|
| >4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 542 | ||||
| d1nn7a_ | 105 | d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus | 2e-42 | |
| d3kvta_ | 103 | d.42.1.2 (A:) akv3.1 voltage-gated potassium chann | 8e-39 | |
| d1t1da_ | 100 | d.42.1.2 (A:) Shaker potassium channel {California | 5e-33 | |
| d1r3jc_ | 103 | f.14.1.1 (C:) Potassium channel protein {Streptomy | 3e-24 | |
| d1xl4a2 | 116 | f.14.1.1 (A:23-138) Inward rectifier potassium cha | 2e-22 | |
| d1p7ba2 | 116 | f.14.1.1 (A:36-151) Inward rectifier potassium cha | 7e-19 | |
| d1lnqa2 | 80 | f.14.1.1 (A:19-98) Potassium channel-related prote | 2e-16 | |
| d2h8pc1 | 57 | f.14.1.1 (C:22-78) Potassium channel protein {Stre | 2e-16 | |
| d1orsc_ | 132 | f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aer | 3e-16 |
| >d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 105 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: Tetramerization domain of potassium channels domain: Potassium channel kv4.2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 145 bits (366), Expect = 2e-42
Identities = 75/102 (73%), Positives = 99/102 (97%)
Query: 45 INVSGRRFETWRNTLEKYPDSLLGSNEREFFYDEDSKEYFFDRDPDIFRHILNYYRTGKL 104
+NVSG RF+TW++TLE+YPD+LLGS+ER+FFY ++++YFFDRDPDIFRHILN+YRTGKL
Sbjct: 4 LNVSGTRFQTWQDTLERYPDTLLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYRTGKL 63
Query: 105 HYPKHECLTSYDEELAFFGILPDVIGDCCYEDYRDRKRENAE 146
HYP+HEC+++YDEELAFFG++P++IGDCCYE+Y+DR+RENAE
Sbjct: 64 HYPRHECISAYDEELAFFGLIPEIIGDCCYEEYKDRRRENAE 105
|
| >d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Length = 103 | Back information, alignment and structure |
|---|
| >d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Length = 100 | Back information, alignment and structure |
|---|
| >d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 103 | Back information, alignment and structure |
|---|
| >d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116 | Back information, alignment and structure |
|---|
| >d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 116 | Back information, alignment and structure |
|---|
| >d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80 | Back information, alignment and structure |
|---|
| >d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 57 | Back information, alignment and structure |
|---|
| >d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 132 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 542 | |||
| d1nn7a_ | 105 | Potassium channel kv4.2 {Rat (Rattus norvegicus) [ | 100.0 | |
| d3kvta_ | 103 | akv3.1 voltage-gated potassium channel {California | 100.0 | |
| d1t1da_ | 100 | Shaker potassium channel {California sea hare (Apl | 99.96 | |
| d1r3jc_ | 103 | Potassium channel protein {Streptomyces coelicolor | 99.79 | |
| d1orsc_ | 132 | Potassium channel KVAP {Archaeon Aeropyrum pernix | 99.67 | |
| d1xl4a2 | 116 | Inward rectifier potassium channel kirbac3.1 {Magn | 99.58 | |
| d1p7ba2 | 116 | Inward rectifier potassium channel Kirbac1.1 {Burk | 99.56 | |
| d2h8pc1 | 57 | Potassium channel protein {Streptomyces coelicolor | 99.37 | |
| d1lnqa2 | 80 | Potassium channel-related protein MthK {Archaeon M | 99.34 | |
| d1r29a_ | 122 | B-cell lymphoma 6 (Bcl6) protein BTB domain {Human | 94.86 | |
| d1buoa_ | 121 | Promyelocytic leukaemia zinc finger (PLZF) protein | 92.05 |
| >d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: Tetramerization domain of potassium channels domain: Potassium channel kv4.2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=1.4e-34 Score=243.23 Aligned_cols=104 Identities=71% Similarity=1.499 Sum_probs=99.7
Q ss_pred eEEEEeCCeEEEeeHHHHhcCCCCccccCCCCCccCCCCceEEEecCCcchHHhhcccccCcccCCCCCCHHHHHHHHhh
Q psy13459 42 KLLINVSGRRFETWRNTLEKYPDSLLGSNEREFFYDEDSKEYFFDRDPDIFRHILNYYRTGKLHYPKHECLTSYDEELAF 121 (542)
Q Consensus 42 ~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~~~~~~~~~~f~DRd~~~F~~Il~~~r~g~l~~p~~~~~~~~~~E~~f 121 (542)
.|+|||||++|+|+++||.++|+|+|+++.+...+++++|+|||||||.+|++||||||+|++++|+++|...|.+||+|
T Consensus 1 iI~LNVGG~~f~t~~~TL~~~p~s~l~~~~~~~~~~~~~~~~FiDRdp~~F~~IL~ylR~G~l~~p~~~~~~~l~~Ea~f 80 (105)
T d1nn7a_ 1 LIVLNVSGTRFQTWQDTLERYPDTLLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYRTGKLHYPRHECISAYDEELAF 80 (105)
T ss_dssp CEEEEETTEEEEECHHHHHTSCSSSTTSGGGGGGEEGGGTEEEECSCTTTHHHHHHHHHHSCBCCCTTSCHHHHHHHHHH
T ss_pred CEEEEECCEEEEEeHHHHhcCCCCCccccccccCcCCCCCcEEEeCCHHHHHHHHHHHhcCccccCCCccHHHHHHHHHH
Confidence 48999999999999999999999999998888889999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccccccchhhhhhhhhH
Q psy13459 122 FGILPDVIGDCCYEDYRDRKRENA 145 (542)
Q Consensus 122 ~~l~~~~~~~cC~e~~~~~~~e~~ 145 (542)
|||+++.+++||++.|.+++++++
T Consensus 81 ygi~~~~l~~cc~~~~~~~~~e~~ 104 (105)
T d1nn7a_ 81 FGLIPEIIGDCCYEEYKDRRRENA 104 (105)
T ss_dssp HTCCSCCBCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999887765
|
| >d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} | Back information, alignment and structure |
|---|
| >d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} | Back information, alignment and structure |
|---|
| >d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
| >d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} | Back information, alignment and structure |
|---|
| >d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} | Back information, alignment and structure |
|---|
| >d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
| >d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
| >d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|