Psyllid ID: psy13474

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-----
Protein Sequence
MQELFSQLQSSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASEEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSEPLPFTQEGK
Secondary Structure (PSIPRED)
cHHHHHHHHHcccccccHHHHHHHHHHHcHHHHHHHccccccHHHHHHHHHHHHHHHHcccccHHcccccccccccccccHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHccccccccHHHHHHHHHHcccHcHcHHccHcHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHccHHccccccccccEEccc
Coil and Loop (DISEMBL)
MQELFSQLQsshesalppDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASEeaedmcgakhcipheKFAMTLVEQSVcgacgatseplpftqegk
Flexible Loop (DISEMBL)
MQELFSQLqsshesalPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASEEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGAtseplpftqegk
Low Complexity Region (SEG)
MQELFSQLQSSHESalppdalrralaeaFFDQQRFQLGFMDDAAECFENMLLRIHYHIASEEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSEPLPFTQEGK
Disordered region (IsUnstruct)
**********************RALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASEEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGA************
Disordered Region (DISOPRED)
MQELFSQLQSSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASEEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGA************
Disordered Region (DISEMBL)
***************LPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASEEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSEPLPFTQEGK
Disordered Region (DISPRO)
MQELFSQLQSSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASEEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSEPLPFT****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQELFSQLQSSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASEEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSEPLPFTQEGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	105	2.2.26 [Sep-21-2011]
Q8BL06	1588	Inactive ubiquitin carbox	yes	N/A	0.971	0.064	0.656	9e-36
Q70EL1	1684	Inactive ubiquitin carbox	yes	N/A	0.971	0.060	0.656	1e-35
Q6IE24	1588	Inactive ubiquitin carbox	yes	N/A	0.971	0.064	0.656	2e-35
Q70EK8	1073	Inactive ubiquitin carbox	no	N/A	0.971	0.095	0.637	4e-34
P15975	1069	Inactive ubiquitin carbox	no	N/A	0.971	0.095	0.607	1e-33

>sp|Q8BL06|UBP54_MOUSE Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Mus musculus GN=Usp54 PE=1 SV=2

 Score =  148 bits (374), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 67/102 (65%), Positives = 81/102 (79%)

Query: 1   MQELFSQLQSSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIAS 60
           ++ +F+Q Q S E  LP D LR ALA+ F D+QRFQLG MDDAAECFEN+L+RIH+HIA 
Sbjct: 79  LKGIFNQFQCSSEKVLPSDTLRSALAKTFQDEQRFQLGIMDDAAECFENLLMRIHFHIAD 138

Query: 61  EEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSEPLPFTQ 102
           E  ED+C A+HCI H+KFAMTL EQ VC +CGATS+PLPF Q
Sbjct: 139 ETKEDICTAQHCISHQKFAMTLFEQCVCSSCGATSDPLPFIQ 180

Has no peptidase activity.
Mus musculus (taxid: 10090)

>sp|Q70EL1|UBP54_HUMAN Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Homo sapiens GN=USP54 PE=1 SV=4

 Score =  148 bits (373), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 67/102 (65%), Positives = 81/102 (79%)

Query: 1   MQELFSQLQSSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIAS 60
           ++ +F+Q Q S E  LP D LR ALA+ F D+QRFQLG MDDAAECFEN+L+RIH+HIA 
Sbjct: 79  LKGIFNQFQCSSEKVLPSDTLRSALAKTFQDEQRFQLGIMDDAAECFENLLMRIHFHIAD 138

Query: 61  EEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSEPLPFTQ 102
           E  ED+C A+HCI H+KFAMTL EQ VC +CGATS+PLPF Q
Sbjct: 139 ETKEDICTAQHCISHQKFAMTLFEQCVCTSCGATSDPLPFIQ 180

Has no peptidase activity.

Homo sapiens (taxid: 9606)

>sp|Q6IE24|UBP54_RAT Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Rattus norvegicus GN=Usp54 PE=2 SV=2

 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 67/102 (65%), Positives = 79/102 (77%)

Query: 1   MQELFSQLQSSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIAS 60
           ++ +F Q Q S E  LP D LR ALA+ F D+QRFQLG MDDAAECFEN+L+RIH+HIA 
Sbjct: 79  LKGIFKQFQCSSEKVLPSDTLRSALAKTFQDEQRFQLGIMDDAAECFENLLMRIHFHIAD 138

Query: 61  EEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSEPLPFTQ 102
           E  ED+C A HCI H+KFAMTL EQ VC +CGATS+PLPF Q
Sbjct: 139 ETKEDICTAPHCISHQKFAMTLFEQCVCTSCGATSDPLPFIQ 180

Has no peptidase activity.

Rattus norvegicus (taxid: 10116)

>sp|Q70EK8|UBP53_HUMAN Inactive ubiquitin carboxyl-terminal hydrolase 53 OS=Homo sapiens GN=USP53 PE=2 SV=2

 Score =  142 bits (359), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 65/102 (63%), Positives = 79/102 (77%)

Query: 1   MQELFSQLQSSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIAS 60
           ++ +F+Q Q S E ALP D +R ALAE+F D+QRFQLG MDDAAECFENML RIH+HI  
Sbjct: 78  LKTIFAQFQHSREKALPSDNIRHALAESFKDEQRFQLGLMDDAAECFENMLERIHFHIVP 137

Query: 61  EEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSEPLPFTQ 102
               DMC +K CI H+KFAMTL EQ VC +CGA+S+PLPFT+
Sbjct: 138 SRDADMCTSKSCITHQKFAMTLYEQCVCRSCGASSDPLPFTE 179

Has no peptidase activity.

Homo sapiens (taxid: 9606)

>sp|P15975|UBP53_MOUSE Inactive ubiquitin carboxyl-terminal hydrolase 53 OS=Mus musculus GN=Usp53 PE=2 SV=2

 Score =  141 bits (356), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 62/102 (60%), Positives = 79/102 (77%)

Query: 1   MQELFSQLQSSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIAS 60
           ++ +F+Q Q S E ALP D +R ALAE+F D+QRFQLG MDDAAECFEN+L RIH+H+  
Sbjct: 78  LKTIFAQFQHSREKALPSDNIRHALAESFKDEQRFQLGLMDDAAECFENILARIHFHLVP 137

Query: 61  EEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSEPLPFTQ 102
               DMC +K C+ H+KFAMTL EQ VC +CGA+S+PLPFT+
Sbjct: 138 NRDADMCTSKSCVTHQKFAMTLYEQCVCRSCGASSDPLPFTE 179

Has no peptidase activity.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
242010160	1709	ubiquitin specific proteinase, putative	0.971	0.059	0.882	1e-48
307191022	1898	Inactive ubiquitin carboxyl-terminal hyd	0.961	0.053	0.861	1e-46
332020947	1900	Inactive ubiquitin carboxyl-terminal hyd	0.961	0.053	0.861	1e-46
340713337	1965	PREDICTED: hypothetical protein LOC10064	0.971	0.051	0.852	2e-46
350415842	1967	PREDICTED: hypothetical protein LOC10074	0.971	0.051	0.852	2e-46
270000836	1295	hypothetical protein TcasGA2_TC011087 [T	0.971	0.078	0.843	3e-46
189241642	1247	PREDICTED: similar to echinus CG2904-PB	0.971	0.081	0.843	3e-46
383856832	1898	PREDICTED: uncharacterized protein LOC10	0.961	0.053	0.861	3e-46
328782021	1909	PREDICTED: hypothetical protein LOC41103	0.961	0.052	0.861	6e-46
321459399	1439	hypothetical protein DAPPUDRAFT_309463 [	0.971	0.070	0.833	1e-45

>gi|242010160|ref|XP_002425844.1| ubiquitin specific proteinase, putative [Pediculus humanus corporis] gi|212509777|gb|EEB13106.1| ubiquitin specific proteinase, putative [Pediculus humanus corporis]

 Score =  196 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 90/102 (88%), Positives = 96/102 (94%)

Query: 1   MQELFSQLQSSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIAS 60
           + ELFSQLQ S ESALPPDALRRALAE FFDQQRFQLGFMDDA+ECFEN+LLRIH+HIA+
Sbjct: 3   INELFSQLQFSQESALPPDALRRALAETFFDQQRFQLGFMDDASECFENILLRIHFHIAN 62

Query: 61  EEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSEPLPFTQ 102
           EEAEDMC AKHCIPH+KFAMTLVEQSVC ACGATSEPLPFTQ
Sbjct: 63  EEAEDMCSAKHCIPHQKFAMTLVEQSVCDACGATSEPLPFTQ 104

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307191022|gb|EFN74776.1| Inactive ubiquitin carboxyl-terminal hydrolase 54 [Camponotus floridanus]

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 87/101 (86%), Positives = 94/101 (93%)

Query: 2   QELFSQLQSSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASE 61
           ++LFSQLQ S ESALPPD LRRALAE+F DQQRFQLGFMDDAAECFEN+LLRIH HIAS 
Sbjct: 68  KDLFSQLQFSQESALPPDTLRRALAESFLDQQRFQLGFMDDAAECFENILLRIHLHIASG 127

Query: 62  EAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSEPLPFTQ 102
           EAEDMC A+HC+PH+KFAMTLVEQSVCGACGATSEPLPFTQ
Sbjct: 128 EAEDMCSARHCVPHQKFAMTLVEQSVCGACGATSEPLPFTQ 168

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020947|gb|EGI61340.1| Inactive ubiquitin carboxyl-terminal hydrolase 54 [Acromyrmex echinatior]

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 87/101 (86%), Positives = 94/101 (93%)

Query: 2   QELFSQLQSSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASE 61
           ++LFSQLQ S ESALPPD LRRALAE+F DQQRFQLGFMDDAAECFEN+LLRIH HIAS 
Sbjct: 67  KDLFSQLQFSQESALPPDTLRRALAESFLDQQRFQLGFMDDAAECFENILLRIHLHIASG 126

Query: 62  EAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSEPLPFTQ 102
           EAEDMC A+HC+PH+KFAMTLVEQSVCGACGATSEPLPFTQ
Sbjct: 127 EAEDMCSARHCVPHQKFAMTLVEQSVCGACGATSEPLPFTQ 167

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713337|ref|XP_003395201.1| PREDICTED: hypothetical protein LOC100646738 [Bombus terrestris]

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 87/102 (85%), Positives = 95/102 (93%)

Query: 1   MQELFSQLQSSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIAS 60
           +++LFSQLQ S ESALPPD LRRALAE+F DQQRFQLGFMDDAAECFEN+LLRIH HIAS
Sbjct: 107 LKDLFSQLQFSQESALPPDTLRRALAESFLDQQRFQLGFMDDAAECFENILLRIHLHIAS 166

Query: 61  EEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSEPLPFTQ 102
            EAEDMC A+HC+PH+KFAMTLVEQSVCGACGATSEPLPFTQ
Sbjct: 167 GEAEDMCSARHCVPHQKFAMTLVEQSVCGACGATSEPLPFTQ 208

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350415842|ref|XP_003490765.1| PREDICTED: hypothetical protein LOC100744780 [Bombus impatiens]

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 87/102 (85%), Positives = 95/102 (93%)

Query: 1   MQELFSQLQSSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIAS 60
           +++LFSQLQ S ESALPPD LRRALAE+F DQQRFQLGFMDDAAECFEN+LLRIH HIAS
Sbjct: 107 LKDLFSQLQFSQESALPPDTLRRALAESFLDQQRFQLGFMDDAAECFENILLRIHLHIAS 166

Query: 61  EEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSEPLPFTQ 102
            EAEDMC A+HC+PH+KFAMTLVEQSVCGACGATSEPLPFTQ
Sbjct: 167 GEAEDMCSARHCVPHQKFAMTLVEQSVCGACGATSEPLPFTQ 208

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270000836|gb|EEZ97283.1| hypothetical protein TcasGA2_TC011087 [Tribolium castaneum]

 Score =  189 bits (479), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 86/102 (84%), Positives = 95/102 (93%)

Query: 1   MQELFSQLQSSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIAS 60
           ++ELFSQLQ S+E+ALPPDALRRALAE+FFDQQRFQLGFMDDAAECFENMLLRIH HIA 
Sbjct: 125 LKELFSQLQFSNETALPPDALRRALAESFFDQQRFQLGFMDDAAECFENMLLRIHMHIAH 184

Query: 61  EEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSEPLPFTQ 102
            EAEDMC A+HCIPH+KFAMTLVEQSVC +CGATSEPL +TQ
Sbjct: 185 GEAEDMCNARHCIPHQKFAMTLVEQSVCNSCGATSEPLSYTQ 226

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189241642|ref|XP_970294.2| PREDICTED: similar to echinus CG2904-PB [Tribolium castaneum]

 Score =  189 bits (479), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 86/102 (84%), Positives = 95/102 (93%)

Query: 1   MQELFSQLQSSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIAS 60
           ++ELFSQLQ S+E+ALPPDALRRALAE+FFDQQRFQLGFMDDAAECFENMLLRIH HIA 
Sbjct: 77  LKELFSQLQFSNETALPPDALRRALAESFFDQQRFQLGFMDDAAECFENMLLRIHMHIAH 136

Query: 61  EEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSEPLPFTQ 102
            EAEDMC A+HCIPH+KFAMTLVEQSVC +CGATSEPL +TQ
Sbjct: 137 GEAEDMCNARHCIPHQKFAMTLVEQSVCNSCGATSEPLSYTQ 178

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856832|ref|XP_003703911.1| PREDICTED: uncharacterized protein LOC100875973 [Megachile rotundata]

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 87/101 (86%), Positives = 94/101 (93%)

Query: 2   QELFSQLQSSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASE 61
           ++LFSQLQ S ESALPPD LRRALAE+F DQQRFQLGFMDDAAECFEN+LLRIH HIAS 
Sbjct: 63  KDLFSQLQFSQESALPPDTLRRALAESFLDQQRFQLGFMDDAAECFENILLRIHLHIASG 122

Query: 62  EAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSEPLPFTQ 102
           EAEDMC A+HC+PH+KFAMTLVEQSVCGACGATSEPLPFTQ
Sbjct: 123 EAEDMCSARHCVPHQKFAMTLVEQSVCGACGATSEPLPFTQ 163

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328782021|ref|XP_394511.4| PREDICTED: hypothetical protein LOC411038 [Apis mellifera]

 Score =  187 bits (476), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 87/101 (86%), Positives = 94/101 (93%)

Query: 2   QELFSQLQSSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASE 61
           ++LFSQLQ S ESALPPD LRRALAE+F DQQRFQLGFMDDAAECFEN+LLRIH HIAS 
Sbjct: 62  KDLFSQLQFSQESALPPDTLRRALAESFLDQQRFQLGFMDDAAECFENILLRIHLHIASG 121

Query: 62  EAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSEPLPFTQ 102
           EAEDMC A+HC+PH+KFAMTLVEQSVCGACGATSEPLPFTQ
Sbjct: 122 EAEDMCSARHCVPHQKFAMTLVEQSVCGACGATSEPLPFTQ 162

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321459399|gb|EFX70453.1| hypothetical protein DAPPUDRAFT_309463 [Daphnia pulex]

 Score =  186 bits (473), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 85/102 (83%), Positives = 94/102 (92%)

Query: 1   MQELFSQLQSSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIAS 60
           ++ELF+QLQ SHESALPPDALRRALAE F +QQRFQLGFMDDAAECFEN+LLRIH+H+AS
Sbjct: 49  LKELFAQLQYSHESALPPDALRRALAETFLNQQRFQLGFMDDAAECFENILLRIHFHLAS 108

Query: 61  EEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSEPLPFTQ 102
            EAED C A HCIPH++FAMTLVEQSVC ACGATSEPLPFTQ
Sbjct: 109 NEAEDQCAAGHCIPHQRFAMTLVEQSVCAACGATSEPLPFTQ 150

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
UNIPROTKB|G8JLB5	744	USP54 "Inactive ubiquitin carb	0.971	0.137	0.578	3.1e-28
ZFIN|ZDB-GENE-090828-2	1497	usp54a "ubiquitin specific pep	0.971	0.068	0.578	6.6e-28
MGI|MGI:1926037	1588	Usp54 "ubiquitin specific pept	0.971	0.064	0.578	7.2e-28
UNIPROTKB|E1BU81	891	E1BU81 "Uncharacterized protei	0.971	0.114	0.568	9.7e-28
UNIPROTKB|F1PG31	1637	USP54 "Uncharacterized protein	0.971	0.062	0.578	1.2e-27
UNIPROTKB|F1SU56	1647	USP54 "Uncharacterized protein	0.971	0.061	0.578	1.2e-27
UNIPROTKB|Q70EL1	1684	USP54 "Inactive ubiquitin carb	0.971	0.060	0.578	1.3e-27
UNIPROTKB|E1BC75	1689	USP54 "Uncharacterized protein	0.971	0.060	0.578	1.3e-27
UNIPROTKB|E2R5P6	1694	USP54 "Uncharacterized protein	0.971	0.060	0.578	1.3e-27
RGD|1303206	1588	Usp54 "ubiquitin specific pept	0.971	0.064	0.578	2.5e-27

UNIPROTKB|G8JLB5 USP54 "Inactive ubiquitin carboxyl-terminal hydrolase 54" [Homo sapiens (taxid:9606)]

 Score = 324 (119.1 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 59/102 (57%), Positives = 72/102 (70%)

Query:     1 MQELFSQLQSSHESXXXXXXXXXXXXXXFFDQQRFQLGFMDDAAECFENMLLRIHYHIAS 60
             ++ +F+Q Q S E               F D+QRFQLG MDDAAECFEN+L+RIH+HIA 
Sbjct:    79 LKGIFNQFQCSSEKVLPSDTLRSALAKTFQDEQRFQLGIMDDAAECFENLLMRIHFHIAD 138

Query:    61 EEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSEPLPFTQ 102
             E  ED+C A+HCI H+KFAMTL EQ VC +CGATS+PLPF Q
Sbjct:   139 ETKEDICTAQHCISHQKFAMTLFEQCVCTSCGATSDPLPFIQ 180

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

ZFIN|ZDB-GENE-090828-2 usp54a "ubiquitin specific peptidase 54a" [Danio rerio (taxid:7955)]

 Score = 326 (119.8 bits), Expect = 6.6e-28, P = 6.6e-28
 Identities = 59/102 (57%), Positives = 72/102 (70%)

Query:     1 MQELFSQLQSSHESXXXXXXXXXXXXXXFFDQQRFQLGFMDDAAECFENMLLRIHYHIAS 60
             ++ +F+Q Q S E               F D+QRFQLG MDDAAECFEN+L+RIH+HI+ 
Sbjct:    79 LKSIFAQFQFSSEKVLPSDALRCALAKTFQDEQRFQLGIMDDAAECFENILMRIHFHISD 138

Query:    61 EEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSEPLPFTQ 102
             E  ED+C AKHCIPH+KFAMTL EQ VC  CGA+S+PLPF Q
Sbjct:   139 ETKEDICTAKHCIPHQKFAMTLFEQCVCSNCGASSDPLPFIQ 180

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

MGI|MGI:1926037 Usp54 "ubiquitin specific peptidase 54" [Mus musculus (taxid:10090)]

 Score = 326 (119.8 bits), Expect = 7.2e-28, P = 7.2e-28
 Identities = 59/102 (57%), Positives = 72/102 (70%)

Query:     1 MQELFSQLQSSHESXXXXXXXXXXXXXXFFDQQRFQLGFMDDAAECFENMLLRIHYHIAS 60
             ++ +F+Q Q S E               F D+QRFQLG MDDAAECFEN+L+RIH+HIA 
Sbjct:    79 LKGIFNQFQCSSEKVLPSDTLRSALAKTFQDEQRFQLGIMDDAAECFENLLMRIHFHIAD 138

Query:    61 EEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSEPLPFTQ 102
             E  ED+C A+HCI H+KFAMTL EQ VC +CGATS+PLPF Q
Sbjct:   139 ETKEDICTAQHCISHQKFAMTLFEQCVCSSCGATSDPLPFIQ 180

GO:0003674 "molecular_function" evidence=ND

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1BU81 E1BU81 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 321 (118.1 bits), Expect = 9.7e-28, P = 9.7e-28
 Identities = 58/102 (56%), Positives = 71/102 (69%)

Query:     1 MQELFSQLQSSHESXXXXXXXXXXXXXXFFDQQRFQLGFMDDAAECFENMLLRIHYHIAS 60
             ++ +F+Q Q S E               F D+QRFQLG MDDAAECFEN+L+RIH+HIA 
Sbjct:    79 LKGIFNQFQCSSEKVLPSDALRTALAKTFQDEQRFQLGIMDDAAECFENLLMRIHFHIAD 138

Query:    61 EEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSEPLPFTQ 102
             E  ED+C A HC+ H+KFAMTL EQ VC +CGATS+PLPF Q
Sbjct:   139 ETKEDICTAPHCVSHQKFAMTLFEQCVCTSCGATSDPLPFIQ 180

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|F1PG31 USP54 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 324 (119.1 bits), Expect = 1.2e-27, P = 1.2e-27
 Identities = 59/102 (57%), Positives = 72/102 (70%)

Query:     1 MQELFSQLQSSHESXXXXXXXXXXXXXXFFDQQRFQLGFMDDAAECFENMLLRIHYHIAS 60
             ++ +F+Q Q S E               F D+QRFQLG MDDAAECFEN+L+RIH+HIA 
Sbjct:    79 LKGIFNQFQCSSEKVLPSDTLRSALAKTFQDEQRFQLGIMDDAAECFENLLMRIHFHIAD 138

Query:    61 EEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSEPLPFTQ 102
             E  ED+C A+HCI H+KFAMTL EQ VC +CGATS+PLPF Q
Sbjct:   139 ETKEDICTAQHCISHQKFAMTLFEQCVCTSCGATSDPLPFIQ 180

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

UNIPROTKB|F1SU56 USP54 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 324 (119.1 bits), Expect = 1.2e-27, P = 1.2e-27
 Identities = 59/102 (57%), Positives = 72/102 (70%)

Query:     1 MQELFSQLQSSHESXXXXXXXXXXXXXXFFDQQRFQLGFMDDAAECFENMLLRIHYHIAS 60
             ++ +F+Q Q S E               F D+QRFQLG MDDAAECFEN+L+RIH+HIA 
Sbjct:    38 LKGIFNQFQCSSEKVLPSDALRSALAKTFQDEQRFQLGIMDDAAECFENLLMRIHFHIAD 97

Query:    61 EEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSEPLPFTQ 102
             E  ED+C A+HCI H+KFAMTL EQ VC +CGATS+PLPF Q
Sbjct:    98 ETKEDICTAQHCISHQKFAMTLFEQCVCTSCGATSDPLPFIQ 139

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

UNIPROTKB|Q70EL1 USP54 "Inactive ubiquitin carboxyl-terminal hydrolase 54" [Homo sapiens (taxid:9606)]

 Score = 324 (119.1 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 59/102 (57%), Positives = 72/102 (70%)

Query:     1 MQELFSQLQSSHESXXXXXXXXXXXXXXFFDQQRFQLGFMDDAAECFENMLLRIHYHIAS 60
             ++ +F+Q Q S E               F D+QRFQLG MDDAAECFEN+L+RIH+HIA 
Sbjct:    79 LKGIFNQFQCSSEKVLPSDTLRSALAKTFQDEQRFQLGIMDDAAECFENLLMRIHFHIAD 138

Query:    61 EEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSEPLPFTQ 102
             E  ED+C A+HCI H+KFAMTL EQ VC +CGATS+PLPF Q
Sbjct:   139 ETKEDICTAQHCISHQKFAMTLFEQCVCTSCGATSDPLPFIQ 180

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|E1BC75 USP54 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 324 (119.1 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 59/102 (57%), Positives = 72/102 (70%)

Query:     1 MQELFSQLQSSHESXXXXXXXXXXXXXXFFDQQRFQLGFMDDAAECFENMLLRIHYHIAS 60
             ++ +F+Q Q S E               F D+QRFQLG MDDAAECFEN+L+RIH+HIA 
Sbjct:    79 LKGIFNQFQCSSEKVLPSDALRSALAKTFQDEQRFQLGIMDDAAECFENLLMRIHFHIAD 138

Query:    61 EEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSEPLPFTQ 102
             E  ED+C A+HCI H+KFAMTL EQ VC +CGATS+PLPF Q
Sbjct:   139 ETKEDICTAQHCISHQKFAMTLFEQCVCTSCGATSDPLPFIQ 180

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

UNIPROTKB|E2R5P6 USP54 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 324 (119.1 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 59/102 (57%), Positives = 72/102 (70%)

Query:     1 MQELFSQLQSSHESXXXXXXXXXXXXXXFFDQQRFQLGFMDDAAECFENMLLRIHYHIAS 60
             ++ +F+Q Q S E               F D+QRFQLG MDDAAECFEN+L+RIH+HIA 
Sbjct:    79 LKGIFNQFQCSSEKVLPSDTLRSALAKTFQDEQRFQLGIMDDAAECFENLLMRIHFHIAD 138

Query:    61 EEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSEPLPFTQ 102
             E  ED+C A+HCI H+KFAMTL EQ VC +CGATS+PLPF Q
Sbjct:   139 ETKEDICTAQHCISHQKFAMTLFEQCVCTSCGATSDPLPFIQ 180

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

RGD|1303206 Usp54 "ubiquitin specific peptidase 54" [Rattus norvegicus (taxid:10116)]

 Score = 321 (118.1 bits), Expect = 2.5e-27, P = 2.5e-27
 Identities = 59/102 (57%), Positives = 70/102 (68%)

Query:     1 MQELFSQLQSSHESXXXXXXXXXXXXXXFFDQQRFQLGFMDDAAECFENMLLRIHYHIAS 60
             ++ +F Q Q S E               F D+QRFQLG MDDAAECFEN+L+RIH+HIA 
Sbjct:    79 LKGIFKQFQCSSEKVLPSDTLRSALAKTFQDEQRFQLGIMDDAAECFENLLMRIHFHIAD 138

Query:    61 EEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSEPLPFTQ 102
             E  ED+C A HCI H+KFAMTL EQ VC +CGATS+PLPF Q
Sbjct:   139 ETKEDICTAPHCISHQKFAMTLFEQCVCTSCGATSDPLPFIQ 180

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q70EL1	UBP54_HUMAN	No assigned EC number	0.6568	0.9714	0.0605	yes	N/A
Q8BL06	UBP54_MOUSE	No assigned EC number	0.6568	0.9714	0.0642	yes	N/A
Q6IE24	UBP54_RAT	No assigned EC number	0.6568	0.9714	0.0642	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	105
cd02257	255	cd02257, Peptidase_C19, Peptidase C19 contains ubi	0.001
cd02666	343	cd02666, Peptidase_C19J, A subfamily of Peptidase	0.002

>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases

 Score = 35.9 bits (83), Expect = 0.001
 Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 9/69 (13%)

Query: 29 FFDQQRFQLGFMDDAAECFENMLLRIHYHI-ASEEAEDMCGAKHCIPHEKFAMTLVEQSV 87
          F +QQ        DA E    +L ++H  +  S +      +   + H+ F   L    V
Sbjct: 19 FSEQQ--------DAHEFLLFLLDKLHEELKKSSKRTSDSSSLKSLIHDLFGGKLESTIV 70

Query: 88 CGACGATSE 96
          C  CG  S 
Sbjct: 71 CLECGHESV 79

They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 255

>gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19

 Score = 35.5 bits (82), Expect = 0.002
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 11/64 (17%)

Query: 3   ELFSQLQSSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASEE 62
            LF+ L  S+  ++ P    + LA     QQ        D  EC +N+L ++   +    
Sbjct: 72  SLFNDLIHSNTRSVTP---SKELAYLALRQQ--------DVTECIDNVLFQLEVALEPIS 120

Query: 63  AEDM 66
               
Sbjct: 121 NAFA 124

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 343

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	105
cd02661	304	Peptidase_C19E A subfamily of Peptidase C19. Pepti	99.09
PF00443	269	UCH: Ubiquitin carboxyl-terminal hydrolase; InterP	98.59
cd02657	305	Peptidase_C19A A subfamily of Peptidase C19. Pepti	98.57
cd02660	328	Peptidase_C19D A subfamily of Peptidase C19. Pepti	98.57
cd02663	300	Peptidase_C19G A subfamily of Peptidase C19. Pepti	98.45
cd02668	324	Peptidase_C19L A subfamily of Peptidase C19. Pepti	98.38
cd02659	334	peptidase_C19C A subfamily of Peptidase C19. Pepti	98.16
cd02658	311	Peptidase_C19B A subfamily of Peptidase C19. Pepti	97.92
KOG1887|consensus	806		97.89
cd02664	327	Peptidase_C19H A subfamily of Peptidase C19. Pepti	97.83
cd02666	343	Peptidase_C19J A subfamily of Peptidase C19. Pepti	97.61
cd02671	332	Peptidase_C19O A subfamily of Peptidase C19. Pepti	97.6
cd02667	279	Peptidase_C19K A subfamily of Peptidase C19. Pepti	97.59
cd02669	440	Peptidase_C19M A subfamily of Peptidase C19. Pepti	97.46
cd02257	255	Peptidase_C19 Peptidase C19 contains ubiquitinyl h	97.36
cd02673	245	Peptidase_C19Q A subfamily of Peptidase C19. Pepti	96.95
cd02674	230	Peptidase_C19R A subfamily of peptidase C19. Pepti	96.58
cd02662	240	Peptidase_C19F A subfamily of Peptidase C19. Pepti	94.26
KOG1865|consensus	545		92.75
PF13423	295	UCH_1: Ubiquitin carboxyl-terminal hydrolase	88.85
KOG2026|consensus	442		87.74
PF13405	31	EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J	85.57
smart00054	29	EFh EF-hand, calcium binding motif. EF-hands are c	81.51
PF08715	320	Viral_protease: Papain like viral protease; InterP	80.8
KOG1867|consensus	492		80.19

>cd02661 Peptidase_C19E A subfamily of Peptidase C19

Probab=99.09  E-value=2.2e-10  Score=86.76  Aligned_cols=93  Identities=17%  Similarity=0.247  Sum_probs=77.3

Q ss_pred             HHHhhhhhhcCCCCCChHHHHHHHHhhchhhhhhcccccCcHHHHHHHHHHHhhhccCCchhh----hccCCCCchhhhh
Q psy13474          2 QELFSQLQSSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASEEAE----DMCGAKHCIPHEK   77 (105)
Q Consensus         2 ~~iF~~~~~s~~~~l~p~~LR~ALa~~~~~~~~Fq~G~M~DA~E~fe~IL~~lH~~~~~~~~~----d~c~~~~Ci~H~~   77 (105)
                      +.+|.+...++.+.++|..++++|...   ...|+.|.+.||.|.|..+|+.||.+.......    .......++.+++
T Consensus        51 ~~~~~~~~~~~~~~~~p~~~~~~l~~~---~~~f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~  127 (304)
T cd02661          51 EAHVERALASSGPGSAPRIFSSNLKQI---SKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQETTLVQQI  127 (304)
T ss_pred             HHHHHHHHhCCCCccChHHHHHHHHHH---HHhhcCcchhhHHHHHHHHHHHHHHHHhhhcccccccCccccCCChhhhc
Confidence            467777788889999999999999875   457999999999999999999999875442211    2344567899999


Q ss_pred             hcceehhhhccCCcCCCCCC
Q psy13474         78 FAMTLVEQSVCGACGATSEP   97 (105)
Q Consensus        78 F~m~l~Eq~vC~~Cg~~S~p   97 (105)
                      |+..+..+.+|.+|+..+..
T Consensus       128 F~g~~~~~~~C~~C~~~s~~  147 (304)
T cd02661         128 FGGYLRSQVKCLNCKHVSNT  147 (304)
T ss_pred             CCcEEeeeEEeCCCCCCcCc
Confidence            99999999999999998874

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.59  E-value=4e-08  Score=71.19  Aligned_cols=91  Identities=22%  Similarity=0.319  Sum_probs=76.9

Q ss_pred             CHHHhhhhhhc--CCCCCChHHHHHHHHhhchhhhhhcccccCcHHHHHHHHHHHhhhccCCchh----hhccCCCCchh
Q psy13474          1 MQELFSQLQSS--HESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASEEA----EDMCGAKHCIP   74 (105)
Q Consensus         1 l~~iF~~~~~s--~~~~l~p~~LR~ALa~~~~~~~~Fq~G~M~DA~E~fe~IL~~lH~~~~~~~~----~d~c~~~~Ci~   74 (105)
                      |+.||..+..+  ....+.|..+..+|...++.   |..|.+.||.|.|..||+.|+..+.....    ...-....++.
T Consensus        55 l~~l~~~~~~~~~~~~~i~~~~~~~~l~~~~~~---~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~  131 (269)
T PF00443_consen   55 LQNLFRSLWSSNSSDSSISPSDFINALSSINPS---FSNGEQQDAHEFLSFLLDWLDEEFNSSFKRKSWKNTNSSEDSLI  131 (269)
T ss_dssp             HHHHHHHHHSSCSSSSEEHCHHHHHHHHHHCGG---GGSSSTEEHHHHHHHHHHHHHHHHTSCSSHHHHHHHHCCEESHH
T ss_pred             hhhhhhhhhhhcccccceeeccccccccccccc---cccccccchhhhhcccccccchhhcccccccccccccccccccc
Confidence            46788888877  88999999999999986444   99999999999999999999998877432    34556677899


Q ss_pred             hhhhcceehhhhccCCcCCC
Q psy13474         75 HEKFAMTLVEQSVCGACGAT   94 (105)
Q Consensus        75 H~~F~m~l~Eq~vC~~Cg~~   94 (105)
                      +.+|+..+.+...|..|+..
T Consensus       132 ~~~f~~~~~~~~~c~~c~~~  151 (269)
T PF00443_consen  132 SDLFGGQFESSIKCSSCKNS  151 (269)
T ss_dssp             HHHH-EEEEEEEEETTTTCE
T ss_pred             cccccccccccccccccccc
Confidence            99999999999999999875

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....

>cd02657 Peptidase_C19A A subfamily of Peptidase C19

Probab=98.57  E-value=1.7e-07  Score=72.06  Aligned_cols=94  Identities=19%  Similarity=0.305  Sum_probs=72.4

Q ss_pred             CHHHhhhhhhcCCCCCChHHHHHHHHhhchhhhhh---cccccCcHHHHHHHHHHHhhhccCCchhhhccCCCCchhhhh
Q psy13474          1 MQELFSQLQSSHESALPPDALRRALAEAFFDQQRF---QLGFMDDAAECFENMLLRIHYHIASEEAEDMCGAKHCIPHEK   77 (105)
Q Consensus         1 l~~iF~~~~~s~~~~l~p~~LR~ALa~~~~~~~~F---q~G~M~DA~E~fe~IL~~lH~~~~~~~~~d~c~~~~Ci~H~~   77 (105)
                      |+.||.+++.+.+ ++.|..+..+|.+.++.=.-.   ..++-.||.|.|..+|+.||..+..      .....++.+.+
T Consensus        49 l~~L~~~l~~~~~-~i~p~~~~~~l~~~~~~f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~------~~~~~~~i~~~  121 (305)
T cd02657          49 LRDLFDTMDKKQE-PVPPIEFLQLLRMAFPQFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPG------AGSKGSFIDQL  121 (305)
T ss_pred             HHHHHHHHHhCCC-cCCcHHHHHHHHHHCcCcccccCCCCccccCHHHHHHHHHHHHHHHhcc------cCCCCcHHHHh
Confidence            4678888887654 899999999999865432112   4458899999999999999998764      22457799999


Q ss_pred             hcceehhhhccCCcC-CCC-CCCCCc
Q psy13474         78 FAMTLVEQSVCGACG-ATS-EPLPFT  101 (105)
Q Consensus        78 F~m~l~Eq~vC~~Cg-~~S-~p~~~t  101 (105)
                      |+..+..+.+|..|+ .++ ...||.
T Consensus       122 F~g~~~~~~~C~~C~~~~~~~~e~f~  147 (305)
T cd02657         122 FGIELETKMKCTESPDEEEVSTESEY  147 (305)
T ss_pred             hceEEEEEEEcCCCCCCCccccccce
Confidence            999999999999999 333 344444

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02660 Peptidase_C19D A subfamily of Peptidase C19

Probab=98.57  E-value=1.2e-07  Score=73.39  Aligned_cols=94  Identities=24%  Similarity=0.359  Sum_probs=73.2

Q ss_pred             CHHHhhhhhh-cCCCCCChHHHHHHHHhhchhhhhhcccccCcHHHHHHHHHHHhhhccCCchhhh-ccCCCCchhhhhh
Q psy13474          1 MQELFSQLQS-SHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASEEAED-MCGAKHCIPHEKF   78 (105)
Q Consensus         1 l~~iF~~~~~-s~~~~l~p~~LR~ALa~~~~~~~~Fq~G~M~DA~E~fe~IL~~lH~~~~~~~~~d-~c~~~~Ci~H~~F   78 (105)
                      |..||..+.. .....++|..+.+++...   ...|..+.+.||.|.|..||++||.......... .=....+|.+++|
T Consensus        51 l~~l~~~l~~~~~~~~~~~~~~l~~~~~~---~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~i~~~F  127 (328)
T cd02660          51 MDEIFQEFYYSGDRSPYGPINLLYLSWKH---SRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEANDESHCNCIIHQTF  127 (328)
T ss_pred             HHHHHHHHhcCCCCCCcCHHHHHHHHHhh---chhhcccccccHHHHHHHHHHHHHHHhhcccccccccccCCceeEEec
Confidence            4578998844 456788999998888764   3479999999999999999999998765432110 0012257899999


Q ss_pred             cceehhhhccCCcCCCCCC
Q psy13474         79 AMTLVEQSVCGACGATSEP   97 (105)
Q Consensus        79 ~m~l~Eq~vC~~Cg~~S~p   97 (105)
                      +..+.....|..|+..+..
T Consensus       128 ~g~~~~~~~C~~C~~~s~~  146 (328)
T cd02660         128 SGSLQSSVTCQRCGGVSTT  146 (328)
T ss_pred             ccEEEeeeEcCCCCCccce
Confidence            9999999999999988764

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02663 Peptidase_C19G A subfamily of Peptidase C19

Probab=98.45  E-value=3.1e-07  Score=71.26  Aligned_cols=93  Identities=19%  Similarity=0.332  Sum_probs=74.4

Q ss_pred             CHHHhhhhhhc--CCCCCChHHHHHHHHhhchhhhhhcccccCcHHHHHHHHHHHhhhccCCchh----------hhccC
Q psy13474          1 MQELFSQLQSS--HESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASEEA----------EDMCG   68 (105)
Q Consensus         1 l~~iF~~~~~s--~~~~l~p~~LR~ALa~~~~~~~~Fq~G~M~DA~E~fe~IL~~lH~~~~~~~~----------~d~c~   68 (105)
                      |+.||.+++.+  ...+++|..+.+||...   ...|..+...||.|.|..+|+.||..+.....          .....
T Consensus        27 L~~lf~~l~~~~~~~~~isP~~f~~~l~~~---~~~f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~~~~~~~~~~  103 (300)
T cd02663          27 LKDLFESISEQKKRTGVISPKKFITRLKRE---NELFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLNNNNNAE  103 (300)
T ss_pred             HHHHHHHHHhCCCCCeeECHHHHHHHHHhh---cCCCCCCccccHHHHHHHHHHHHHHHHHHHhhcccccccccccccCC
Confidence            57889988775  45689999999999864   34799999999999999999999998753211          11223


Q ss_pred             CCCchhhhhhcceehhhhccCCcCCCCC
Q psy13474         69 AKHCIPHEKFAMTLVEQSVCGACGATSE   96 (105)
Q Consensus        69 ~~~Ci~H~~F~m~l~Eq~vC~~Cg~~S~   96 (105)
                      ....+.+.+|+-.+.....|.+|+..|.
T Consensus       104 ~~~~~i~~~F~G~~~~~~~C~~C~~~s~  131 (300)
T cd02663         104 PQPTWVHEIFQGILTNETRCLTCETVSS  131 (300)
T ss_pred             cCCCChhhhCceEEEeeEEeCCCCCCcc
Confidence            3467789999999999999999998764

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02668 Peptidase_C19L A subfamily of Peptidase C19

Probab=98.38  E-value=5.2e-07  Score=70.74  Aligned_cols=84  Identities=24%  Similarity=0.359  Sum_probs=69.9

Q ss_pred             CHHHhhhhhhcCCCCCChHHHHHHHHhhchhhhhhcccccCcHHHHHHHHHHHhhhccCCchhhhccCCCCchhhhhhcc
Q psy13474          1 MQELFSQLQSSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASEEAEDMCGAKHCIPHEKFAM   80 (105)
Q Consensus         1 l~~iF~~~~~s~~~~l~p~~LR~ALa~~~~~~~~Fq~G~M~DA~E~fe~IL~~lH~~~~~~~~~d~c~~~~Ci~H~~F~m   80 (105)
                      |+.||.+.+.++..+++|..|.++|.        |..|...||.|.|..||+.||..+.....    .....+.+..|+.
T Consensus        57 L~~lf~~l~~~~~~~i~p~~f~~~l~--------~~~~~QqDa~EFl~~lLd~L~~~l~~~~~----~~~~~~i~~~F~G  124 (324)
T cd02668          57 LQLIFAQLQFGNRSVVDPSGFVKALG--------LDTGQQQDAQEFSKLFLSLLEAKLSKSKN----PDLKNIVQDLFRG  124 (324)
T ss_pred             HHHHHHHHHhCCCceEChHHHHHHhC--------CCCccccCHHHHHHHHHHHHHHHHhhccC----Ccccchhhhhcce
Confidence            46789999989999999999999984        66788999999999999999987653211    1124688999999


Q ss_pred             eehhhhccCCcCCCCC
Q psy13474         81 TLVEQSVCGACGATSE   96 (105)
Q Consensus        81 ~l~Eq~vC~~Cg~~S~   96 (105)
                      .+..+..|..||.++.
T Consensus       125 ~~~~~~~C~~C~~~s~  140 (324)
T cd02668         125 EYSYVTQCSKCGRESS  140 (324)
T ss_pred             EEEEEEEeCCCCCccc
Confidence            9999999999998753

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02659 peptidase_C19C A subfamily of Peptidase C19

Probab=98.16  E-value=1.8e-06  Score=67.07  Aligned_cols=88  Identities=19%  Similarity=0.260  Sum_probs=69.5

Q ss_pred             CHHHhhhhhhcCCCCCChHHHHHHHHhhchhhhhhcccccCcHHHHHHHHHHHhhhccCCchhhhccCCCCchhhhhhcc
Q psy13474          1 MQELFSQLQSSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASEEAEDMCGAKHCIPHEKFAM   80 (105)
Q Consensus         1 l~~iF~~~~~s~~~~l~p~~LR~ALa~~~~~~~~Fq~G~M~DA~E~fe~IL~~lH~~~~~~~~~d~c~~~~Ci~H~~F~m   80 (105)
                      |+.||..++.++...++|+.++  +...+ ....|..|...||.|.|..||+.||......       ....+...+|+.
T Consensus        50 l~~lf~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~-------~~~~~i~~lF~g  119 (334)
T cd02659          50 LQRLFLFLQLSESPVKTTELTD--KTRSF-GWDSLNTFEQHDVQEFFRVLFDKLEEKLKGT-------GQEGLIKNLFGG  119 (334)
T ss_pred             HHHHHHHHHhCCccccCcchhh--eeccC-CCCCCCcccchhHHHHHHHHHHHHHHHhccC-------cccchhhhhCce
Confidence            4678888888888888887776  22222 2356899999999999999999999877542       234688899999


Q ss_pred             eehhhhccCCcCCCCCCC
Q psy13474         81 TLVEQSVCGACGATSEPL   98 (105)
Q Consensus        81 ~l~Eq~vC~~Cg~~S~p~   98 (105)
                      .+.....|..|+..|...
T Consensus       120 ~~~~~~~C~~C~~~s~~~  137 (334)
T cd02659         120 KLVNYIICKECPHESERE  137 (334)
T ss_pred             EEEeEEEecCCCceeccc
Confidence            999999999998776543

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02658 Peptidase_C19B A subfamily of Peptidase C19

Probab=97.92  E-value=1.6e-05  Score=61.38  Aligned_cols=71  Identities=13%  Similarity=0.279  Sum_probs=58.1

Q ss_pred             CCCCChHHHHHHHHhhchhhhhhcccccCcHHHHHHHHHHHhhhccCCchhhhccCCCCchhhhhhcceehhhhccCCcC
Q psy13474         13 ESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASEEAEDMCGAKHCIPHEKFAMTLVEQSVCGACG   92 (105)
Q Consensus        13 ~~~l~p~~LR~ALa~~~~~~~~Fq~G~M~DA~E~fe~IL~~lH~~~~~~~~~d~c~~~~Ci~H~~F~m~l~Eq~vC~~Cg   92 (105)
                      ..++.|..++.+|...   ...|..|.+.||.|.|..+|+.||.......        .-.+.++|+..+.....|.+|+
T Consensus        76 ~~~i~p~~~~~~l~~~---~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~--------~~~~~~~f~~~~~~~i~C~~C~  144 (311)
T cd02658          76 QVGIKPSMFKALIGKG---HPEFSTMRQQDALEFLLHLIDKLDRESFKNL--------GLNPNDLFKFMIEDRLECLSCK  144 (311)
T ss_pred             ccccCcHHHHHHHhcc---ChhhcccccccHHHHHHHHHHHHHHhhcccc--------cCCchhheEEEeeEEEEcCCCC
Confidence            4579999999999864   4569999999999999999999998764211        1135689999999999999999


Q ss_pred             CC
Q psy13474         93 AT   94 (105)
Q Consensus        93 ~~   94 (105)
                      ..
T Consensus       145 ~~  146 (311)
T cd02658         145 KV  146 (311)
T ss_pred             CE
Confidence            63

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1887|consensus

Probab=97.89  E-value=3.1e-06  Score=75.33  Aligned_cols=87  Identities=13%  Similarity=0.089  Sum_probs=76.8

Q ss_pred             HHHHHHHHhhchhhhhhcccccCcHHHHHHHHHHHhhhccCCchh-------------hhccCCCCchhhhhhcceehhh
Q psy13474         19 DALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASEEA-------------EDMCGAKHCIPHEKFAMTLVEQ   85 (105)
Q Consensus        19 ~~LR~ALa~~~~~~~~Fq~G~M~DA~E~fe~IL~~lH~~~~~~~~-------------~d~c~~~~Ci~H~~F~m~l~Eq   85 (105)
                      ..++.||...|++.-.++...|++|++.|-++|.+|+...+..+.             .|.+...-||+|.+|||...|+
T Consensus       528 ~~vp~al~~~~~~s~~~~~~~~~~~S~lL~~ll~~l~~~~~~ss~~~~v~~aile~~~~Wk~~er~~l~~~lf~l~~~e~  607 (806)
T KOG1887|consen  528 LQVPIALQNFFPASVSESIKHEGVYSELLSDLLLSLEEVHNASSSAADVVVAILEFWQCWKNPERESLVNRLFTLEEKER  607 (806)
T ss_pred             ccCcchhhhcCCcchHHHHHhhhhHHHHHHHHHhhhHHHhhhcchhhHHHHHHHhcccccccHHHHHHHHhhhhhhhhhh
Confidence            478899999999999999999999999999999999987765422             2566677899999999999999


Q ss_pred             hccCCcCCCCCCCCCccCCC
Q psy13474         86 SVCGACGATSEPLPFTQEGK  105 (105)
Q Consensus        86 ~vC~~Cg~~S~p~~~t~~~~  105 (105)
                      +.|.+|+..+....+|++|.
T Consensus       608 ~Sc~~cr~~~n~peqsS~~~  627 (806)
T KOG1887|consen  608 MSCSKCRRDLNYPEQSSYGI  627 (806)
T ss_pred             ccccccccCCCCcchhhhhh
Confidence            99999999999888888763

>cd02664 Peptidase_C19H A subfamily of Peptidase C19

Probab=97.83  E-value=3e-05  Score=61.18  Aligned_cols=75  Identities=25%  Similarity=0.355  Sum_probs=60.5

Q ss_pred             CHHHhhhhhhcCCCCCChHH-HHHHHHhhchhhhhhcccccCcHHHHHHHHHHHhhhccCCchhhhccCCCCchhhhhhc
Q psy13474          1 MQELFSQLQSSHESALPPDA-LRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASEEAEDMCGAKHCIPHEKFA   79 (105)
Q Consensus         1 l~~iF~~~~~s~~~~l~p~~-LR~ALa~~~~~~~~Fq~G~M~DA~E~fe~IL~~lH~~~~~~~~~d~c~~~~Ci~H~~F~   79 (105)
                      |+.+|..+..++..+++|.. +-.++     ....|..|...||.|.|..+|+.||                .+..++|+
T Consensus        46 L~~lf~~l~~~~~~~~~~~~~~l~~~-----~~~~f~~~~QqDa~EFl~~lLd~l~----------------~~i~~~F~  104 (327)
T cd02664          46 LQLLQAHLMHTQRRAEAPPDYFLEAS-----RPPWFTPGSQQDCSEYLRYLLDRLH----------------TLIEKMFG  104 (327)
T ss_pred             HHHHHHHHhhcCCcccCCHHHHHHHh-----cccccCCCCcCCHHHHHHHHHHHHH----------------HHHHhhCc
Confidence            46788888888777777765 22222     2356999999999999999999999                37889999


Q ss_pred             ceehhhhccCCcCCCCC
Q psy13474         80 MTLVEQSVCGACGATSE   96 (105)
Q Consensus        80 m~l~Eq~vC~~Cg~~S~   96 (105)
                      ..+..+..|..|+..|.
T Consensus       105 G~~~~~i~C~~C~~~s~  121 (327)
T cd02664         105 GKLSTTIRCLNCNSTSA  121 (327)
T ss_pred             EEeEeEEEcCCCCCEec
Confidence            99999999999997765

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02666 Peptidase_C19J A subfamily of Peptidase C19

Probab=97.61  E-value=8.4e-05  Score=60.25  Aligned_cols=81  Identities=20%  Similarity=0.278  Sum_probs=64.5

Q ss_pred             CHHHhhhhhhcCCCCCChHHHHHHHHhhchhhhhhcccccCcHHHHHHHHHHHhhhccCCchhh------hccCCCCchh
Q psy13474          1 MQELFSQLQSSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASEEAE------DMCGAKHCIP   74 (105)
Q Consensus         1 l~~iF~~~~~s~~~~l~p~~LR~ALa~~~~~~~~Fq~G~M~DA~E~fe~IL~~lH~~~~~~~~~------d~c~~~~Ci~   74 (105)
                      |+.||...+.+....+.|...=..|+.           .-.||.|++..+|+.||..+......      +.=....++.
T Consensus        70 L~~LF~~l~~s~~~~v~P~~~l~~l~~-----------~QQDa~Ef~~~lld~Le~~lk~~~~~~~~~~~~~~~~~~~~I  138 (343)
T cd02666          70 LRSLFNDLIHSNTRSVTPSKELAYLAL-----------RQQDVTECIDNVLFQLEVALEPISNAFAGPDTEDDKEQSDLI  138 (343)
T ss_pred             HHHHHHHHHhCCCCccCcHHHHHhccc-----------cccchHHHHHHHHHHHHHHhcCccccccCcccccccchhhhh
Confidence            578999999999899988876555552           67899999999999999998654321      1112447899


Q ss_pred             hhhhcceehhhhccCCcC
Q psy13474         75 HEKFAMTLVEQSVCGACG   92 (105)
Q Consensus        75 H~~F~m~l~Eq~vC~~Cg   92 (105)
                      +++|+-.+-...+|..|+
T Consensus       139 ~~lF~G~~~~~i~c~~~~  156 (343)
T cd02666         139 KRLFSGKTKQQLVPESMG  156 (343)
T ss_pred             hHhceeeEEEEEEecccC
Confidence            999999988888898886

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02671 Peptidase_C19O A subfamily of Peptidase C19

Probab=97.60  E-value=0.00013  Score=58.58  Aligned_cols=67  Identities=24%  Similarity=0.324  Sum_probs=57.8

Q ss_pred             cCCCCCChHHHHHHHHhhchhhhhhcccccCcHHHHHHHHHHHhhhccCCchhhhccCCCCchhhhhhcceehhhhccCC
Q psy13474         11 SHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASEEAEDMCGAKHCIPHEKFAMTLVEQSVCGA   90 (105)
Q Consensus        11 s~~~~l~p~~LR~ALa~~~~~~~~Fq~G~M~DA~E~fe~IL~~lH~~~~~~~~~d~c~~~~Ci~H~~F~m~l~Eq~vC~~   90 (105)
                      +...+.+|..|..++.+.   ...|..+.-.||.|.|..+|+.||                .+.+..|+-.+..+..|.+
T Consensus        79 ~~~~~~~P~~~~~~l~~~---~~~f~~~~QQDA~EFl~~LLd~L~----------------~~i~~~F~g~~~~~~~C~~  139 (332)
T cd02671          79 DELANQAPRRLLNALREV---NPMYEGYLQHDAQEVLQCILGNIQ----------------ELVEKDFQGQLVLRTRCLE  139 (332)
T ss_pred             hcccccCHHHHHHHHHHh---ccccCCccccCHHHHHHHHHHHHH----------------HHHHhhhceEEEEEEEeCC
Confidence            344566799999999864   356889999999999999999998                2678899999999999999


Q ss_pred             cCCCCC
Q psy13474         91 CGATSE   96 (105)
Q Consensus        91 Cg~~S~   96 (105)
                      ||..|.
T Consensus       140 C~~~s~  145 (332)
T cd02671         140 CETFTE  145 (332)
T ss_pred             CCCeec
Confidence            998876

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02667 Peptidase_C19K A subfamily of Peptidase C19

Probab=97.59  E-value=0.00011  Score=56.71  Aligned_cols=61  Identities=20%  Similarity=0.317  Sum_probs=54.3

Q ss_pred             ChHHHHHHHHhhchhhhhhcccccCcHHHHHHHHHHHhhhccCCchhhhccCCCCchhhhhhcceehhhhccCCcCCCCC
Q psy13474         17 PPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASEEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSE   96 (105)
Q Consensus        17 ~p~~LR~ALa~~~~~~~~Fq~G~M~DA~E~fe~IL~~lH~~~~~~~~~d~c~~~~Ci~H~~F~m~l~Eq~vC~~Cg~~S~   96 (105)
                      .|..|..+|.+   ....|..|.+.||.|-|..+|+.||                .+.+.+|+..+.....|.+|+..|.
T Consensus        31 ~P~~~~~~l~~---~~~~f~~~~QqDA~Efl~~lld~l~----------------~~i~~~F~G~~~~~i~C~~C~~~s~   91 (279)
T cd02667          31 TPKELFSQVCR---KAPQFKGYQQQDSHELLRYLLDGLR----------------TFIDSIFGGELTSTIMCESCGTVSL   91 (279)
T ss_pred             CHHHHHHHHHH---hhHhhcCCchhhHHHHHHHHHHHHH----------------HhhhhhcceEEEEEEEcCCCCCEeC
Confidence            78888888875   4567999999999999999999999                3778899999999999999998876

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02669 Peptidase_C19M A subfamily of Peptidase C19

Probab=97.46  E-value=0.00029  Score=58.33  Aligned_cols=83  Identities=16%  Similarity=0.257  Sum_probs=62.8

Q ss_pred             HHhhhhhhcC--CCCCChHHHHHHHHhhchhhhhhcccccCcHHHHHHHHHHHhhhccCCchhhhccCCCCchhhhhhcc
Q psy13474          3 ELFSQLQSSH--ESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASEEAEDMCGAKHCIPHEKFAM   80 (105)
Q Consensus         3 ~iF~~~~~s~--~~~l~p~~LR~ALa~~~~~~~~Fq~G~M~DA~E~fe~IL~~lH~~~~~~~~~d~c~~~~Ci~H~~F~m   80 (105)
                      .+|..+...+  ..+++|..+-++|...  ..+.|..+.-.||.|.|.-+|+.||..+....     ....||.|+.|+-
T Consensus       170 ~l~~kl~~~~~~~~~isP~~fl~~l~~~--~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~-----~~~~~ii~~~F~G  242 (440)
T cd02669         170 ELIRKIWNPRNFKGHVSPHELLQAVSKV--SKKKFSITEQSDPVEFLSWLLNTLHKDLGGSK-----KPNSSIIHDCFQG  242 (440)
T ss_pred             HHHHHHhccccCCCccCHHHHHHHHHhh--cccccCCcccCCHHHHHHHHHHHHHHHhccCC-----CCCCCcceeccCc
Confidence            4455443222  5789999999999865  45779999999999999999999999876431     2347899999998


Q ss_pred             eehhhhccCCcC
Q psy13474         81 TLVEQSVCGACG   92 (105)
Q Consensus        81 ~l~Eq~vC~~Cg   92 (105)
                      .+.-...|..|.
T Consensus       243 ~l~~~~~c~~~~  254 (440)
T cd02669         243 KVQIETQKIKPH  254 (440)
T ss_pred             eEEEEEEeeccc
Confidence            876666665444

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases

Probab=97.36  E-value=0.00013  Score=51.57  Aligned_cols=57  Identities=23%  Similarity=0.321  Sum_probs=47.2

Q ss_pred             ccCcHHHHHHHHHHHhhhccCCchh-hhccCCCCchhhhhhcceehhhhccCCcCCCC
Q psy13474         39 FMDDAAECFENMLLRIHYHIASEEA-EDMCGAKHCIPHEKFAMTLVEQSVCGACGATS   95 (105)
Q Consensus        39 ~M~DA~E~fe~IL~~lH~~~~~~~~-~d~c~~~~Ci~H~~F~m~l~Eq~vC~~Cg~~S   95 (105)
                      .+.||.|+|..||+.||..+..... ...+.....+.+++|++.+.++.+|..|+..+
T Consensus        21 ~q~Da~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~   78 (255)
T cd02257          21 EQQDAHEFLLFLLDKLHEELKKSSKRTSDSSSLKSLIHDLFGGKLESTIVCLECGHES   78 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCchhhhhcccEEeeEEECCCCCCCc
Confidence            8899999999999999998766332 23445556799999999999999999998543

They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02673 Peptidase_C19Q A subfamily of Peptidase C19

Probab=96.95  E-value=0.00081  Score=51.97  Aligned_cols=76  Identities=21%  Similarity=0.187  Sum_probs=57.6

Q ss_pred             HHHHHHhhchhhhhhcccccCcHHHHHHHHHHHhhhccCCch--hh-hccCCCCchhhhhhcceehhhhccCCcCCCCC
Q psy13474         21 LRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASEE--AE-DMCGAKHCIPHEKFAMTLVEQSVCGACGATSE   96 (105)
Q Consensus        21 LR~ALa~~~~~~~~Fq~G~M~DA~E~fe~IL~~lH~~~~~~~--~~-d~c~~~~Ci~H~~F~m~l~Eq~vC~~Cg~~S~   96 (105)
                      --.||+..-.....|.-|...||-|-|--+|+.||.......  .. ..=...++.++..|+..+.....|.+||..|.
T Consensus        14 ~~~~~~~i~~~~~~F~~~~QQDAhEFL~~LLd~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~l~s~i~C~~C~~~s~   92 (245)
T cd02673          14 TMQALSSIGKINTEFDNDDQQDAHEFLLTLLEAIDDIMQVNRTNVPPSNIEIKRLNPLEAFKYTIESSYVCIGCSFEEN   92 (245)
T ss_pred             HHHHHHHHhhhhhhcCCCchhhHHHHHHHHHHHHHHHHHhhcccCCCCcccccccCHhHheeeEEEeEEEecCCCCeee
Confidence            346888887888999999999999999999999997432210  00 00012345678999999999999999998863

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02674 Peptidase_C19R A subfamily of peptidase C19

Probab=96.58  E-value=0.0018  Score=47.41  Aligned_cols=43  Identities=30%  Similarity=0.367  Sum_probs=39.2

Q ss_pred             ccCcHHHHHHHHHHHhhhccCCchhhhccCCCCchhhhhhcceehhhhccCCcCCCCCC
Q psy13474         39 FMDDAAECFENMLLRIHYHIASEEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSEP   97 (105)
Q Consensus        39 ~M~DA~E~fe~IL~~lH~~~~~~~~~d~c~~~~Ci~H~~F~m~l~Eq~vC~~Cg~~S~p   97 (105)
                      .+.||.|.|..||+.||                .+...+|+..+..+..|.+||..+..
T Consensus        21 ~QqDa~Ef~~~ll~~l~----------------~~i~~~F~~~~~~~~~C~~C~~~~~~   63 (230)
T cd02674          21 DQQDAQEFLLFLLDGLH----------------SIIVDLFQGQLKSRLTCLTCGKTSTT   63 (230)
T ss_pred             hhhhHHHHHHHHHHHHh----------------hhHHheeCCEEeCcEEcCCCcCCcce
Confidence            79999999999999999                26778999999999999999999863

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02662 Peptidase_C19F A subfamily of Peptidase C19

Probab=94.26  E-value=0.066  Score=40.50  Aligned_cols=42  Identities=29%  Similarity=0.414  Sum_probs=37.7

Q ss_pred             ccCcHHHHHHHHHHHhhhccCCchhhhccCCCCchhhhhhcceehhhhccCCcCCCCC
Q psy13474         39 FMDDAAECFENMLLRIHYHIASEEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSE   96 (105)
Q Consensus        39 ~M~DA~E~fe~IL~~lH~~~~~~~~~d~c~~~~Ci~H~~F~m~l~Eq~vC~~Cg~~S~   96 (105)
                      ...||.|-|..+|+.||.                +....|...+.....|..||..|.
T Consensus        33 ~QqDa~EFl~~ll~~l~~----------------~i~~~F~g~~~~~i~C~~C~~~s~   74 (240)
T cd02662          33 EQQDAHELFQVLLETLEQ----------------LLKFPFDGLLASRIVCLQCGESSK   74 (240)
T ss_pred             hhcCHHHHHHHHHHHHHH----------------hccCccccEEEEEEEeCCCCCccC
Confidence            889999999999999991                466789999999999999999865

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1865|consensus

Probab=92.75  E-value=0.25  Score=43.12  Aligned_cols=84  Identities=18%  Similarity=0.215  Sum_probs=65.1

Q ss_pred             cCCCCCChHHHHHHHHhhchhhhhhcccccCcHHHHHHHHHHHhhhccCCchh-hhccCCCCchhhhhhcceehhhhccC
Q psy13474         11 SHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASEEA-EDMCGAKHCIPHEKFAMTLVEQSVCG   89 (105)
Q Consensus        11 s~~~~l~p~~LR~ALa~~~~~~~~Fq~G~M~DA~E~fe~IL~~lH~~~~~~~~-~d~c~~~~Ci~H~~F~m~l~Eq~vC~   89 (105)
                      +.+.+|.|..+..-|-.   =+..|.-|.=+||=|-|..+++.|+...-+... .+.=....=|+|++||=.|.-|.-|.
T Consensus       167 ~~g~pisP~~i~s~L~~---I~~~f~~grQEDAHEFLr~~vd~mqk~cL~g~~~~~~~sq~ttlv~~iFGG~LrS~vkC~  243 (545)
T KOG1865|consen  167 NPGHPISPSQILSNLRN---ISAHFGRGRQEDAHEFLRFTVDAMQKACLPGHKQVDPRSQDTTLVHQIFGGYLRSQIKCL  243 (545)
T ss_pred             CCCCccChHHHHHhhhh---hcccccCCchhhHHHHHHHHHHHHHHhhcCCCccCCcccccceehhhhhccchhhceecc
Confidence            34448999988777765   467799999999999999999999986532211 12222334599999999999999999


Q ss_pred             CcCCCCCC
Q psy13474         90 ACGATSEP   97 (105)
Q Consensus        90 ~Cg~~S~p   97 (105)
                      .|...|+-
T Consensus       244 ~C~~vS~t  251 (545)
T KOG1865|consen  244 HCKGVSDT  251 (545)
T ss_pred             cCCCcccc
Confidence            99998873

>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase

Probab=88.85  E-value=0.88  Score=35.25  Aligned_cols=91  Identities=18%  Similarity=0.234  Sum_probs=69.0

Q ss_pred             HHhhhhh-hcCCCCCChHHHHHHHHhhchhhhhhcccccCcHHHHHHHHHHHhhhccCCchh------hhccCCCCchhh
Q psy13474          3 ELFSQLQ-SSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASEEA------EDMCGAKHCIPH   75 (105)
Q Consensus         3 ~iF~~~~-~s~~~~l~p~~LR~ALa~~~~~~~~Fq~G~M~DA~E~fe~IL~~lH~~~~~~~~------~d~c~~~~Ci~H   75 (105)
                      =||..+. .+++....+..+=+||+...   +-..+|.-.|..+.+.-||++||.-+.....      ........=...
T Consensus        47 fLf~ml~~~~~g~~cq~sNflr~l~~~~---~a~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~  123 (295)
T PF13423_consen   47 FLFDMLDSKAKGINCQASNFLRALSWIP---EAAALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSENSSSSPESSIS  123 (295)
T ss_pred             HHHHHhhhhcCCCcChHHHHHHHHhcCH---HHHhcchhHHHHHHHHHHHHHHhHHHHhcCcccccccccccCCCcchHH
Confidence            3788888 78888888877777998763   4456788999999999999999997644331      112233334567


Q ss_pred             hhhcceehhhhccCCcCCCCC
Q psy13474         76 EKFAMTLVEQSVCGACGATSE   96 (105)
Q Consensus        76 ~~F~m~l~Eq~vC~~Cg~~S~   96 (105)
                      ++||+.......|.+||.++.
T Consensus       124 ~~f~~~~~~~~~c~~c~~~~~  144 (295)
T PF13423_consen  124 QLFGTSFETTIRCTSCGHESV  144 (295)
T ss_pred             HHhCcceeeeecccccCCeEE
Confidence            899999999999999999874

>KOG2026|consensus

Probab=87.74  E-value=1.1  Score=38.08  Aligned_cols=59  Identities=20%  Similarity=0.424  Sum_probs=51.3

Q ss_pred             CCCCChHHHHHHHHhhchhhhhhcccccCcHHHHHHHHHHHhhhccCCchhhhccCCCCchhhhhhc
Q psy13474         13 ESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASEEAEDMCGAKHCIPHEKFA   79 (105)
Q Consensus        13 ~~~l~p~~LR~ALa~~~~~~~~Fq~G~M~DA~E~fe~IL~~lH~~~~~~~~~d~c~~~~Ci~H~~F~   79 (105)
                      ..-|+|-.+-.|.+.+  ..++|+.|+=.|+.|-+.-+|+.||..+.+..      ++..|.|--|.
T Consensus       194 k~hvSphe~lqaV~~~--s~k~f~i~~q~DpveFlswllntlhs~l~~~k------~~~SIi~~~fq  252 (442)
T KOG2026|consen  194 KGHVSPHEFLQAVMKL--SKKRFRIGQQSDPVEFLSWLLNTLHSDLRGSK------KASSIIHKSFQ  252 (442)
T ss_pred             cccCCHHHHHHHHHHH--hhhheecCCCCCHHHHHHHHHHHHHHHhCCCC------CchhHhhHhhc
Confidence            3568899999999987  88999999999999999999999999987754      56679998885

>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B

Probab=85.57  E-value=0.49  Score=25.07  Aligned_cols=27  Identities=19%  Similarity=0.354  Sum_probs=23.9

Q ss_pred             CHHHhhhhhhcCCCCCChHHHHHHHHh
Q psy13474          1 MQELFSQLQSSHESALPPDALRRALAE   27 (105)
Q Consensus         1 l~~iF~~~~~s~~~~l~p~~LR~ALa~   27 (105)
                      |+.+|..|+.....-|..+.|+.+|.+
T Consensus         2 l~~~F~~~D~d~dG~I~~~el~~~l~~   28 (31)
T PF13405_consen    2 LREAFKMFDKDGDGFIDFEELRAILRK   28 (31)
T ss_dssp             HHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence            478999999999999999999999984

...

>smart00054 EFh EF-hand, calcium binding motif

Probab=81.51  E-value=1.8  Score=20.24  Aligned_cols=27  Identities=11%  Similarity=0.304  Sum_probs=22.6

Q ss_pred             CHHHhhhhhhcCCCCCChHHHHHHHHh
Q psy13474          1 MQELFSQLQSSHESALPPDALRRALAE   27 (105)
Q Consensus         1 l~~iF~~~~~s~~~~l~p~~LR~ALa~   27 (105)
                      ++.+|..++......|+.+.++..+..
T Consensus         2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~   28 (29)
T smart00054        2 LKEAFRLFDKDGDGKIDFEEFKDLLKA   28 (29)
T ss_pred             HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence            467899998888889999999988764

EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.

>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein

Probab=80.80  E-value=0.77  Score=37.56  Aligned_cols=29  Identities=14%  Similarity=0.101  Sum_probs=17.8

Q ss_pred             hhhhcccccCcHHHHHHHHHHHhhhccCC
Q psy13474         32 QQRFQLGFMDDAAECFENMLLRIHYHIAS   60 (105)
Q Consensus        32 ~~~Fq~G~M~DA~E~fe~IL~~lH~~~~~   60 (105)
                      ...+..|+|+||.++|+.+|+.++-..+.
T Consensus       155 ~~~~~~G~~gDa~~~L~~ll~~~~~~~~~  183 (320)
T PF08715_consen  155 STNAKKGDPGDAEYVLSKLLKDADLDYSV  183 (320)
T ss_dssp             HTT--TTS---HHHHHHHHHTTB-TTT-E
T ss_pred             HcCCCCCCCcCHHHHHHHHHHhccccceE
Confidence            34578999999999999999987765443

The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.

>KOG1867|consensus

Probab=80.19  E-value=3.3  Score=35.65  Aligned_cols=91  Identities=25%  Similarity=0.319  Sum_probs=67.8

Q ss_pred             HHHhhhhhhcC-CCCCChHHHHHHHHhhchhhhhhcccccCcHHHHHHHHHHHhhhccCCchhhhccCCC----Cchhhh
Q psy13474          2 QELFSQLQSSH-ESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASEEAEDMCGAK----HCIPHE   76 (105)
Q Consensus         2 ~~iF~~~~~s~-~~~l~p~~LR~ALa~~~~~~~~Fq~G~M~DA~E~fe~IL~~lH~~~~~~~~~d~c~~~----~Ci~H~   76 (105)
                      .++|....... ...+.|-.+....-+.-+   .|+-=.=-||-|-+..+++.+|.+...+.....|...    .||.|.
T Consensus       212 ~~~~~~~~s~~~~~~~sp~~~l~~~~k~~~---~~~g~~Qqda~eF~~~~~~~~~~~~~~~~k~~~~~~~~~~c~~iv~~  288 (492)
T KOG1867|consen  212 DRLFQALYSGHNRTPYSPFELLNLVWKHSP---NLAGYEQQDAHEFLIALLDRLHREKDDCGKSLIASQSNKQCPCIVHT  288 (492)
T ss_pred             hhhhhHhhcCCCCCCcChHHHHHHHHHhCc---ccccccccchHHHHHHhcccccccccccccccccccCCcccccccce
Confidence            45566665555 788888888777776433   3444555799999999999999999333333333332    699999


Q ss_pred             hhcceehhhhccCCcCCCC
Q psy13474         77 KFAMTLVEQSVCGACGATS   95 (105)
Q Consensus        77 ~F~m~l~Eq~vC~~Cg~~S   95 (105)
                      .|.=.+--+.+|..|+..|
T Consensus       289 ~F~G~L~~~v~c~~c~~~S  307 (492)
T KOG1867|consen  289 IFSGTLQSDVTCQTCGSKS  307 (492)
T ss_pred             eecceeccceeehhhccee
Confidence            9999999999999999988

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	105
1vjv_A	415	Ubiquitin carboxyl-terminal hydrolase 6; YFR010W,	6e-05
2ayn_A	404	Ubiquitin carboxyl-terminal hydrolase 14; deubiqui	9e-05
1nb8_A	353	Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub	6e-04

>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415

 Score = 39.1 bits (90), Expect = 6e-05
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 4/72 (5%)

Query: 1   MQELFSQLQSSHESALPPDALRRALAEAF--FDQQRFQLGFMD--DAAECFENMLLRIHY 56
           M+  F  LQ+    ++ P  L   L + +  F ++  Q GF    DA E F  +   +  
Sbjct: 80  MKRCFENLQNKSFKSVLPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSI 139

Query: 57  HIASEEAEDMCG 68
               + +ED   
Sbjct: 140 VFGDKFSEDFRI 151

>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404

 Score = 38.9 bits (90), Expect = 9e-05
 Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 16/111 (14%)

Query: 1   MQELFSQLQSSHESALPPDALRRALAEAF--FDQQRFQLGFM-DDAAECFENMLLRIHYH 57
           +++LF  +  +  S +PP  L + L  AF  F ++  Q  ++  DA EC+  M+  +   
Sbjct: 66  LRDLFDSMDKTSSS-IPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQK 124

Query: 58  I------------ASEEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSE 96
           +            +S  +      K  +  + F +       C        
Sbjct: 125 LEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCTESEEEEV 175

>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353

 Score = 36.4 bits (84), Expect = 6e-04
 Identities = 14/96 (14%), Positives = 26/96 (27%), Gaps = 13/96 (13%)

Query: 1   MQELFSQLQSSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIAS 60
           +Q +F +LQ S +        +       F  +        D  E    +L  +   +  
Sbjct: 53  LQRVFYELQHSDKPVGTKKLTKS------FGWETLDSFMQHDVQELCRVLLDNVENKMKG 106

Query: 61  EEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSE 96
              E           + F   +V    C      S+
Sbjct: 107 TCVE-------GTIPKLFRGKMVSYIQCKEVDYRSD 135

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	105
1vjv_A	415	Ubiquitin carboxyl-terminal hydrolase 6; YFR010W,	98.63
2ayn_A	404	Ubiquitin carboxyl-terminal hydrolase 14; deubiqui	98.6
3nhe_A	348	Ubiquitin carboxyl-terminal hydrolase 2; cysteine	98.56
2y6e_A	367	Ubiquitin carboxyl-terminal hydrolase 4; HET: CME;	98.54
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	98.44
1nb8_A	353	Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub	98.36
3i3t_A	355	Ubiquitin carboxyl-terminal hydrolase 21; hydrolas	98.35
2gfo_A	396	Ubiquitin carboxyl-terminal hydrolase 8; protease,	98.3
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	98.15
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	97.65

>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9

Probab=98.63  E-value=1.2e-08  Score=80.25  Aligned_cols=86  Identities=16%  Similarity=0.147  Sum_probs=73.4

Q ss_pred             CHHHhhhhhhcCCCCCChHHHHHHHHhhchhhhhhc-------ccccCcHHHHHHHHHHHhhhccCCchhhhccCCCCch
Q psy13474          1 MQELFSQLQSSHESALPPDALRRALAEAFFDQQRFQ-------LGFMDDAAECFENMLLRIHYHIASEEAEDMCGAKHCI   73 (105)
Q Consensus         1 l~~iF~~~~~s~~~~l~p~~LR~ALa~~~~~~~~Fq-------~G~M~DA~E~fe~IL~~lH~~~~~~~~~d~c~~~~Ci   73 (105)
                      |+.||..++.++..++.|..+.++|...++   .|.       .|...||.|.|..||+.||..+..           ++
T Consensus        80 l~~lf~~l~~~~~~~v~p~~~~~~l~~~~~---~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~-----------~~  145 (415)
T 1vjv_A           80 MKRCFENLQNKSFKSVLPVVLLNTLRKCYP---QFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD-----------KF  145 (415)
T ss_dssp             HHHHHHHHHCC-CCEECCHHHHHHHHHHCG---GGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH-----------HH
T ss_pred             HHHHHHHHhcCCCCccCHHHHHHHHHHhCc---hhhccccCCCCccccCHHHHHHHHHHHHHHHhcc-----------ch
Confidence            467899998888899999999999998654   677       789999999999999999998753           68


Q ss_pred             hhhhhcceehhhhccCCcCCCC---CCCCCc
Q psy13474         74 PHEKFAMTLVEQSVCGACGATS---EPLPFT  101 (105)
Q Consensus        74 ~H~~F~m~l~Eq~vC~~Cg~~S---~p~~~t  101 (105)
                      ++.+|+ .+..+..|..||..|   ...||.
T Consensus       146 i~~~F~-~~~~~~~C~~C~~~s~s~~~e~f~  175 (415)
T 1vjv_A          146 SEDFRI-QFKTTIKDTANDNDITVKENESDS  175 (415)
T ss_dssp             HTTTCE-EEEEEEEETTEEEEEEEECCCEES
T ss_pred             HHHHHH-hheEEEEECCCCCCccccccccce
Confidence            999999 999999999999876   455554

>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A

Probab=98.60  E-value=3.6e-08  Score=76.64  Aligned_cols=91  Identities=21%  Similarity=0.393  Sum_probs=71.4

Q ss_pred             CHHHhhhhhhcCCCCCChHHHHHHHHhhchhhhhhc------ccccCcHHHHHHHHHHHhhhccCCchhh---h------
Q psy13474          1 MQELFSQLQSSHESALPPDALRRALAEAFFDQQRFQ------LGFMDDAAECFENMLLRIHYHIASEEAE---D------   65 (105)
Q Consensus         1 l~~iF~~~~~s~~~~l~p~~LR~ALa~~~~~~~~Fq------~G~M~DA~E~fe~IL~~lH~~~~~~~~~---d------   65 (105)
                      |+.||..++.++ .++.|..+.++|.+..+   .|.      .|...||.|.|..||+.||..+......   +      
T Consensus        66 l~~lf~~l~~~~-~~v~P~~~~~~l~~~~~---~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~e~~~~~~  141 (404)
T 2ayn_A           66 LRDLFDSMDKTS-SSIPPIILLQFLHMAFP---QFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSA  141 (404)
T ss_dssp             HHHHHHHHHHHC-SEECCHHHHHHHHHHCG---GGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC----------
T ss_pred             HHHHHHHHhcCC-CcCChHHHHHHHHHhCc---hhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCcccccchhhh
Confidence            467888888765 89999999999997533   355      5899999999999999999987543210   0      


Q ss_pred             ---ccCCCCchhhhhhcceehhhhccCCcCCCC
Q psy13474         66 ---MCGAKHCIPHEKFAMTLVEQSVCGACGATS   95 (105)
Q Consensus        66 ---~c~~~~Ci~H~~F~m~l~Eq~vC~~Cg~~S   95 (105)
                         .-....++.+.+|+..+..+..|..||.+|
T Consensus       142 ~~~~~~~~~s~i~~~F~G~l~s~i~C~~C~~~s  174 (404)
T 2ayn_A          142 SAATPSKKKSLIDQFFGVEFETTMKCTESEEEE  174 (404)
T ss_dssp             --------CCHHHHHTCEEEEEEEEESSSCCCC
T ss_pred             hhhhccccCchhhhhccEEEEEEEEecCCCCcc
Confidence               112346899999999999999999999986

>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A

Probab=98.56  E-value=6.2e-08  Score=73.06  Aligned_cols=92  Identities=18%  Similarity=0.228  Sum_probs=73.8

Q ss_pred             HHHhhhhh-hcCCCCCChHHHHHHHHhhchhhhhhcccccCcHHHHHHHHHHHhhhccCCchh-----------------
Q psy13474          2 QELFSQLQ-SSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASEEA-----------------   63 (105)
Q Consensus         2 ~~iF~~~~-~s~~~~l~p~~LR~ALa~~~~~~~~Fq~G~M~DA~E~fe~IL~~lH~~~~~~~~-----------------   63 (105)
                      ..||..+. .+...++.|..++++|....+   .|..|...||.|.|..||+.||..+.....                 
T Consensus        62 ~~l~~~l~~~~~~~~~~p~~~~~~l~~~~~---~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~  138 (348)
T 3nhe_A           62 AKLIQTIWTSSPNDVVSPSEFKTQIQRYAP---RFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEK  138 (348)
T ss_dssp             HHHHHHHTTCCTTCEECCHHHHHHHHHHSG---GGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHH
T ss_pred             HHHHHHHHcCCCCCccCHHHHHHHHHHhhh---hhCCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHH
Confidence            45666665 578889999999999997643   799999999999999999999987643210                 


Q ss_pred             -----hhccCCCCchhhhhhcceehhhhccCCcCCCCC
Q psy13474         64 -----EDMCGAKHCIPHEKFAMTLVEQSVCGACGATSE   96 (105)
Q Consensus        64 -----~d~c~~~~Ci~H~~F~m~l~Eq~vC~~Cg~~S~   96 (105)
                           ........++.+.+|+..+..+..|..||.+|.
T Consensus       139 ~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~  176 (348)
T 3nhe_A          139 GRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCST  176 (348)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHCEEEEEEEEETTTCCEEE
T ss_pred             HHHHHHHHHhhcCCccccccceEEEEEEEcCCCCCEee
Confidence                 012345578999999999999999999998764

>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}

Probab=98.54  E-value=8.6e-08  Score=74.04  Aligned_cols=92  Identities=17%  Similarity=0.252  Sum_probs=73.4

Q ss_pred             HHHhhhhhhcCCCCCChHHHHHHHHhhchhhhhhcccccCcHHHHHHHHHHHhhhccCCchhh------------h----
Q psy13474          2 QELFSQLQSSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASEEAE------------D----   65 (105)
Q Consensus         2 ~~iF~~~~~s~~~~l~p~~LR~ALa~~~~~~~~Fq~G~M~DA~E~fe~IL~~lH~~~~~~~~~------------d----   65 (105)
                      +.||.++..++..++.|..+.++|...   ...|..|...||.|.|..+|+.||..+......            +    
T Consensus        63 ~~L~~~l~~~~~~~i~P~~~~~~l~~~---~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a  139 (367)
T 2y6e_A           63 AELIKQMWSGRDAHVAPRMFKTQVGRF---APQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVA  139 (367)
T ss_dssp             HHHHHHHTSSSCSEECCHHHHHHHHHH---CGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHH
T ss_pred             HHHHHHHHcCCCCCcCHHHHHHHHHHh---hhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHH
Confidence            567777777788899999999999874   456999999999999999999999876432100            0    


Q ss_pred             ------ccCCCCchhhhhhcceehhhhccCCcCCCCC
Q psy13474         66 ------MCGAKHCIPHEKFAMTLVEQSVCGACGATSE   96 (105)
Q Consensus        66 ------~c~~~~Ci~H~~F~m~l~Eq~vC~~Cg~~S~   96 (105)
                            ......++++.+|+..+..+..|..||.+|.
T Consensus       140 ~~~w~~~~~~~~s~i~~~F~G~l~s~~~C~~C~~~s~  176 (367)
T 2y6e_A          140 KEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSV  176 (367)
T ss_dssp             HHHHHHHHHHCCSHHHHHHCEEEEEEEECTTTCCEEE
T ss_pred             HHHHHHHHHhcCCccccccCcEEeeeEEeCCCCCEee
Confidence                  0112467999999999999999999999864

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A

Probab=98.44  E-value=2e-07  Score=74.56  Aligned_cols=84  Identities=21%  Similarity=0.223  Sum_probs=68.4

Q ss_pred             CCCCChHHHHHHHHhhchhhhhhcccccCcHHHHHHHHHHHhhhccCCch------hhhccCCCCchhhhhhcceehhhh
Q psy13474         13 ESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASEE------AEDMCGAKHCIPHEKFAMTLVEQS   86 (105)
Q Consensus        13 ~~~l~p~~LR~ALa~~~~~~~~Fq~G~M~DA~E~fe~IL~~lH~~~~~~~------~~d~c~~~~Ci~H~~F~m~l~Eq~   86 (105)
                      ...+.|..+...|.........|..|...||.|.|..+|+.||..+....      .........||.+++|+..+..+.
T Consensus       213 ~~~~~~~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~G~l~~~~  292 (476)
T 3mhs_A          213 TSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLESSI  292 (476)
T ss_dssp             -CCCSCHHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC-------CCCSCCSHHHHHSCEEEEEEE
T ss_pred             ccccCcchHHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCcceeecceEEEEEE
Confidence            34788888999998877788999999999999999999999998763211      112334457999999999999999


Q ss_pred             ccCCcCCCCC
Q psy13474         87 VCGACGATSE   96 (105)
Q Consensus        87 vC~~Cg~~S~   96 (105)
                      .|..||.+|.
T Consensus       293 ~C~~C~~~s~  302 (476)
T 3mhs_A          293 VCPGCQNNSK  302 (476)
T ss_dssp             ECTTTCCCCE
T ss_pred             EECCCCCeeC
Confidence            9999999974

>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A

Probab=98.36  E-value=3.7e-07  Score=70.85  Aligned_cols=83  Identities=16%  Similarity=0.207  Sum_probs=68.1

Q ss_pred             CHHHhhhhhhcCCCCCChHHHHHHHHhhchhhhhhcccccCcHHHHHHHHHHHhhhccCCchhhhccCCCCchhhhhhcc
Q psy13474          1 MQELFSQLQSSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASEEAEDMCGAKHCIPHEKFAM   80 (105)
Q Consensus         1 l~~iF~~~~~s~~~~l~p~~LR~ALa~~~~~~~~Fq~G~M~DA~E~fe~IL~~lH~~~~~~~~~d~c~~~~Ci~H~~F~m   80 (105)
                      |+.||..++.+.. .+.|..|.++++.     ..|..+...||.|.|..+|+.||..+...       ...++.+.+|+.
T Consensus        53 l~~lf~~l~~~~~-~~~~~~l~~~~~~-----~~~~~~~QqDA~EFl~~LLd~L~~~~~~~-------~~~s~i~~~F~g  119 (353)
T 1nb8_A           53 LQRVFYELQHSDK-PVGTKKLTKSFGW-----ETLDSFMQHDVQELCRVLLDNVENKMKGT-------CVEGTIPKLFRG  119 (353)
T ss_dssp             HHHHHHHHHHCSS-CBCCHHHHHHHTC-----CBTTTTTTSCHHHHHHHHHHHHHHHTTTS-------TTTTHHHHHHCE
T ss_pred             HHHHHHHHhhcCC-CCCCHHHHhhcCC-----CCCCcccchhHHHHHHHHHHHHHHHhcCC-------Cccchhhhhcee
Confidence            4678888887654 5778888887752     46899999999999999999999876542       235689999999


Q ss_pred             eehhhhccCCcCCCCC
Q psy13474         81 TLVEQSVCGACGATSE   96 (105)
Q Consensus        81 ~l~Eq~vC~~Cg~~S~   96 (105)
                      .+..+..|..||.+|.
T Consensus       120 ~~~~~i~C~~C~~~s~  135 (353)
T 1nb8_A          120 KMVSYIQCKEVDYRSD  135 (353)
T ss_dssp             EEEEEEEESSSCCEEE
T ss_pred             EEEEEEEeccCCCeec
Confidence            9999999999998763

>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A

Probab=98.35  E-value=3e-07  Score=69.46  Aligned_cols=92  Identities=20%  Similarity=0.249  Sum_probs=70.4

Q ss_pred             HHHhhhhhhcC-CCCCChHHHHHHHHhhchhhhhhcccccCcHHHHHHHHHHHhhhccCCchhh----------------
Q psy13474          2 QELFSQLQSSH-ESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASEEAE----------------   64 (105)
Q Consensus         2 ~~iF~~~~~s~-~~~l~p~~LR~ALa~~~~~~~~Fq~G~M~DA~E~fe~IL~~lH~~~~~~~~~----------------   64 (105)
                      ..||..+..++ .++++|..++++|.+.   ...|..|...||.|.|..||+.||..+......                
T Consensus        55 ~~l~~~l~~~~~~~~v~p~~~~~~l~~~---~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~  131 (355)
T 3i3t_A           55 ADVIGALWHPDSCEAVNPTRFRAVFQKY---VPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRR  131 (355)
T ss_dssp             HHHHHHTSSCSSCCCBCCHHHHHHHHHH---CGGGCSSCCCBHHHHHHHHHHHHHHHHCCC-------------------
T ss_pred             HHHHHHHhcCCCCCcccHHHHHHHHHHh---ChhhCCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCcccc
Confidence            45666665543 4889999999999875   356999999999999999999999876432110                


Q ss_pred             ---------------------hccCCCCchhhhhhcceehhhhccCCcCCCCC
Q psy13474         65 ---------------------DMCGAKHCIPHEKFAMTLVEQSVCGACGATSE   96 (105)
Q Consensus        65 ---------------------d~c~~~~Ci~H~~F~m~l~Eq~vC~~Cg~~S~   96 (105)
                                           .......++.+.+|+-.+.....|..||.+|.
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~  184 (355)
T 3i3t_A          132 GGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRST  184 (355)
T ss_dssp             ---------CCHHHHHHHHHHHHHHHCCSHHHHHHCEEEEEEEEETTTCCEEE
T ss_pred             ccccccCCCCCHHHHHHHHHHHhhhccCCcccccccEEEEeeEEeCCCCCCce
Confidence                                 01122457899999999999999999999874

>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A

Probab=98.30  E-value=3.9e-07  Score=71.96  Aligned_cols=91  Identities=12%  Similarity=0.164  Sum_probs=71.8

Q ss_pred             HHhhhhhhcCCCCCChHHHHHHHHhhchhhhhhcccccCcHHHHHHHHHHHhhhccCCchh------------h------
Q psy13474          3 ELFSQLQSSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASEEA------------E------   64 (105)
Q Consensus         3 ~iF~~~~~s~~~~l~p~~LR~ALa~~~~~~~~Fq~G~M~DA~E~fe~IL~~lH~~~~~~~~------------~------   64 (105)
                      .||..+..++.+.++|..++.+|...   ...|..|...||.|.|..+|+.||..+.....            +      
T Consensus       118 ~l~~~l~~~~~~~i~P~~f~~~l~~~---~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~  194 (396)
T 2gfo_A          118 IIMKALWTGQYRYISPKDFKITIGKI---NDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAE  194 (396)
T ss_dssp             HHHHHHHHSCEEEECCHHHHHHHHHH---CGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHH
T ss_pred             HHHHHHHcCCCceECHHHHHHHHHHh---chhhcCCCCCChHHHHHHHHHHHHHHHhhhccccccccccccccchhhHHH
Confidence            45556666677889999999999975   45799999999999999999999987643210            0      


Q ss_pred             --h--ccCCCCchhhhhhcceehhhhccCCcCCCCC
Q psy13474         65 --D--MCGAKHCIPHEKFAMTLVEQSVCGACGATSE   96 (105)
Q Consensus        65 --d--~c~~~~Ci~H~~F~m~l~Eq~vC~~Cg~~S~   96 (105)
                        +  ......+|.+.+|+..+.....|..||.+|.
T Consensus       195 ~~w~~~~~~~~s~I~~lF~G~l~s~i~C~~C~~~s~  230 (396)
T 2gfo_A          195 HAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSR  230 (396)
T ss_dssp             HHHHHHHHHCCSHHHHHHCEEEEEEEEETTTCCEEE
T ss_pred             HHHHHhhhccCCccchhhCcEEEEEEEeCCCCceec
Confidence              0  0112468999999999999999999999874

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=98.15  E-value=1.5e-06  Score=70.82  Aligned_cols=83  Identities=16%  Similarity=0.209  Sum_probs=67.5

Q ss_pred             CHHHhhhhhhcCCCCCChHHHHHHHHhhchhhhhhcccccCcHHHHHHHHHHHhhhccCCchhhhccCCCCchhhhhhcc
Q psy13474          1 MQELFSQLQSSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASEEAEDMCGAKHCIPHEKFAM   80 (105)
Q Consensus         1 l~~iF~~~~~s~~~~l~p~~LR~ALa~~~~~~~~Fq~G~M~DA~E~fe~IL~~lH~~~~~~~~~d~c~~~~Ci~H~~F~m   80 (105)
                      |+.||.+++.+. ..+.|..|.++++     ...|..+...||.|.|..||+.||..+...       ...++.+++|+.
T Consensus       222 l~~lf~~l~~~~-~~~~~~~l~~~~~-----~~~~~~~~QqDa~Efl~~LLd~L~~~l~~~-------~~~s~i~~lF~G  288 (522)
T 2f1z_A          222 LQRVFYELQHSD-KPVGTKKLTKSFG-----WETLDSFMQHDVQELCRVLLDNVENKMKGT-------CVEGTIPKLFRG  288 (522)
T ss_dssp             HHHHHHHHHHCS-SCBCCTTHHHHTC-----CCTTTSSTTSCHHHHHHHHHHHHHHHHTTS-------TTTTHHHHHHCE
T ss_pred             HHHHHHHHhcCC-CccCcHHHHhhcC-----CccCCCcccccHHHHHHHHHHHHHhhccCC-------ccccchhhheeE
Confidence            467888888766 4567777777664     246899999999999999999999876542       234689999999


Q ss_pred             eehhhhccCCcCCCCC
Q psy13474         81 TLVEQSVCGACGATSE   96 (105)
Q Consensus        81 ~l~Eq~vC~~Cg~~S~   96 (105)
                      .+..+..|..|+.+|.
T Consensus       289 ~~~s~i~C~~C~~~s~  304 (522)
T 2f1z_A          289 KMVSYIQCKEVDYRSD  304 (522)
T ss_dssp             EEEEEECCSSSCCCCC
T ss_pred             EEEEEEEcCCCCceee
Confidence            9999999999999874

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}

Probab=97.65  E-value=3.7e-05  Score=67.19  Aligned_cols=71  Identities=18%  Similarity=0.299  Sum_probs=61.3

Q ss_pred             CCCCCChHHHHHHHHhhchhhhhhcccccCcHHHHHHHHHHHhhhccCCchhhhccCCCCchhhhhhcceehhhhccCCc
Q psy13474         12 HESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASEEAEDMCGAKHCIPHEKFAMTLVEQSVCGAC   91 (105)
Q Consensus        12 ~~~~l~p~~LR~ALa~~~~~~~~Fq~G~M~DA~E~fe~IL~~lH~~~~~~~~~d~c~~~~Ci~H~~F~m~l~Eq~vC~~C   91 (105)
                      ....+.|..+..++...   ...|..+...||.|.|..||+.||..+...          -+++++|+-.+..+..|..|
T Consensus       427 ~~~~isP~~f~~~l~~~---~~~F~~~~QQDA~EFl~~LLd~L~~el~~~----------s~i~~lF~G~l~s~i~C~~C  493 (854)
T 3ihp_A          427 VQDGIAPRMFKALIGKG---HPEFSTNRQQDAQEFFLHLINMVERNCRSS----------ENPNEVFRFLVEEKIKCLAT  493 (854)
T ss_dssp             --CCBCCHHHHHHHTTT---CTTTTSSSCCBHHHHHHHHHHHHHHTCTTS----------CCGGGGTCEEEEEEEEETTT
T ss_pred             CCCccChHHHHHHHhhh---ccccccccccCHHHHHHHHHHHHHHHhccc----------CCchhhcCceEEEEEEecCC
Confidence            56689999999999874   467999999999999999999999988543          37899999999999999999


Q ss_pred             CCCC
Q psy13474         92 GATS   95 (105)
Q Consensus        92 g~~S   95 (105)
                      |..|
T Consensus       494 ~~vs  497 (854)
T 3ihp_A          494 EKVK  497 (854)
T ss_dssp             TEEE
T ss_pred             CCEe
Confidence            9865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	105
d2ayna1	383	Ubiquitin carboxyl-terminal hydrolase 14 {Human (H	98.14
d1nbfa_	347	Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU	98.11
d2gfoa1	348	Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho	97.94
d2hd5a1	336	Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum	97.07
d1vjva_	397	Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y	96.81

>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1.5e-06  Score=63.44  Aligned_cols=95  Identities=19%  Similarity=0.310  Sum_probs=71.1

Q ss_pred             CHHHhhhhhhcCCCCCChHHHHHHHHhhchh---hhhhcccccCcHHHHHHHHHHHhhhccCCchh------------hh
Q psy13474          1 MQELFSQLQSSHESALPPDALRRALAEAFFD---QQRFQLGFMDDAAECFENMLLRIHYHIASEEA------------ED   65 (105)
Q Consensus         1 l~~iF~~~~~s~~~~l~p~~LR~ALa~~~~~---~~~Fq~G~M~DA~E~fe~IL~~lH~~~~~~~~------------~d   65 (105)
                      |+.||..+.. ..+.++|..+.++|....+.   ...|..+.+.||.|.|..||+.||..+.....            ..
T Consensus        56 l~~l~~~l~~-~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~QqDa~Ef~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~  134 (383)
T d2ayna1          56 LRDLFDSMDK-TSSSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAA  134 (383)
T ss_dssp             HHHHHHHHHH-HCSEECCHHHHHHHHHHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC-------------
T ss_pred             HHHHHHHHhc-CCCccCHHHHHHHHHHHhHhhccccccCchhhhhHHHHHHHHHHHHHHHHHhhhccccccccchhhhhc
Confidence            3567777765 45678999999999877543   34566777999999999999999998755322            12


Q ss_pred             ccCCCCchhhhhhcceehhhhccCCcCCCCC
Q psy13474         66 MCGAKHCIPHEKFAMTLVEQSVCGACGATSE   96 (105)
Q Consensus        66 ~c~~~~Ci~H~~F~m~l~Eq~vC~~Cg~~S~   96 (105)
                      ......++...+|+..+..+..|..|+.++.
T Consensus       135 ~~~~~~s~i~~lF~g~~~~~~~c~~c~~~~~  165 (383)
T d2ayna1         135 TPSKKKSLIDQFFGVEFETTMKCTESEEEEV  165 (383)
T ss_dssp             -----CCHHHHHTCEEEEEEEEESSSCCCCC
T ss_pred             ccccCCCeeeeeeeEEEEEEEEecCCCceee
Confidence            3445578899999999999999999999764

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=1.2e-06  Score=64.78  Aligned_cols=83  Identities=16%  Similarity=0.199  Sum_probs=66.0

Q ss_pred             CHHHhhhhhhcCCCCCChHHHHHHHHhhchhhhhhcccccCcHHHHHHHHHHHhhhccCCchhhhccCCCCchhhhhhcc
Q psy13474          1 MQELFSQLQSSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASEEAEDMCGAKHCIPHEKFAM   80 (105)
Q Consensus         1 l~~iF~~~~~s~~~~l~p~~LR~ALa~~~~~~~~Fq~G~M~DA~E~fe~IL~~lH~~~~~~~~~d~c~~~~Ci~H~~F~m   80 (105)
                      |+.||.+++.+.. ++.|..+.+++.     ...|..+.+.||.|.|..+|+.||..+....       ..++.+.+|+.
T Consensus        53 l~~lf~~l~~~~~-~~~~~~~~~~~~-----~~~~~~~~qqDa~Ef~~~ll~~l~~~~~~~~-------~~~~i~~lF~g  119 (347)
T d1nbfa_          53 LQRVFYELQHSDK-PVGTKKLTKSFG-----WETLDSFMQHDVQELCRVLLDNVENKMKGTC-------VEGTIPKLFRG  119 (347)
T ss_dssp             HHHHHHHHHHCSS-CBCCHHHHHHTT-----CCGGGGGSCBCHHHHHHHHHHHHHHHHTTST-------TTTHHHHHHCE
T ss_pred             HHHHHHHHhcCCC-CcChHHHHHhhc-----hhhcchHHHHHHHHHHHHHHHHHHHHHhhcc-------ccccccceece
Confidence            4678888887664 456666655553     3568899999999999999999998775532       24688999999


Q ss_pred             eehhhhccCCcCCCCC
Q psy13474         81 TLVEQSVCGACGATSE   96 (105)
Q Consensus        81 ~l~Eq~vC~~Cg~~S~   96 (105)
                      .+..+..|..||..|.
T Consensus       120 ~~~~~~~C~~C~~~s~  135 (347)
T d1nbfa_         120 KMVSYIQCKEVDYRSD  135 (347)
T ss_dssp             EEEEEEEESSSCCEEE
T ss_pred             EEEEeEEeCCccceee
Confidence            9999999999999775

>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=1.8e-06  Score=62.08  Aligned_cols=95  Identities=12%  Similarity=0.183  Sum_probs=76.6

Q ss_pred             CHHHhhhhhhcCCCCCChHHHHHHHHhhchhhhhhcccccCcHHHHHHHHHHHhhhccCCchh-----------------
Q psy13474          1 MQELFSQLQSSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASEEA-----------------   63 (105)
Q Consensus         1 l~~iF~~~~~s~~~~l~p~~LR~ALa~~~~~~~~Fq~G~M~DA~E~fe~IL~~lH~~~~~~~~-----------------   63 (105)
                      |+.||..+..+..+.+.|..+..++.+.   ...|..|.+.||.|.|..||+.||..+.....                 
T Consensus        69 l~~l~~~l~~~~~~~i~~~~~~~~~~~~---~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (348)
T d2gfoa1          69 FGIIMKALWTGQYRYISPKDFKITIGKI---NDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKA  145 (348)
T ss_dssp             HHHHHHHHHHSCEEEECCHHHHHHHHHH---CGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHH
T ss_pred             HHHHHHHHHhCCCCcccccccccccccc---CccccCcccCCHHHHHHHHHHHHHHHhhhcccccccccccccccchhhh
Confidence            3567888888899999999999999975   45688899999999999999999987643211                 


Q ss_pred             -----hhccCCCCchhhhhhcceehhhhccCCcCCCCCCC
Q psy13474         64 -----EDMCGAKHCIPHEKFAMTLVEQSVCGACGATSEPL   98 (105)
Q Consensus        64 -----~d~c~~~~Ci~H~~F~m~l~Eq~vC~~Cg~~S~p~   98 (105)
                           ........++.+..|...+.....|..|+..+.+.
T Consensus       146 ~~~~~~~~~~~~~s~i~~~f~~~~~~~~~c~~~~~~~~~~  185 (348)
T d2gfoa1         146 AEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTF  185 (348)
T ss_dssp             HHHHHHHHHHHCCSHHHHHHCEEEEEEEEETTTCCEEEEE
T ss_pred             hhhhhhhccccCCchhHhhhhhhhheeccccCCCceeecc
Confidence                 01334456789999999999999999999877643

>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00038  Score=48.84  Aligned_cols=91  Identities=18%  Similarity=0.247  Sum_probs=68.8

Q ss_pred             HHHhhhhhh-cCCCCCChHHHHHHHHhhchhhhhhcccccCcHHHHHHHHHHHhhhccCCchh-----------------
Q psy13474          2 QELFSQLQS-SHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIASEEA-----------------   63 (105)
Q Consensus         2 ~~iF~~~~~-s~~~~l~p~~LR~ALa~~~~~~~~Fq~G~M~DA~E~fe~IL~~lH~~~~~~~~-----------------   63 (105)
                      ..||..+.. .....+.|..+..++..   ....|+.+.+.||.|.+..+|+.||..+.....                 
T Consensus        56 ~~l~~~l~~~~~~~~i~p~~~~~~~~~---~~~~~~~~~q~Da~Ef~~~lld~l~~~l~~~~~~~~~~~~~~~~~~~~~~  132 (336)
T d2hd5a1          56 AKLIQTIWTSSPNDVVSPSEFKTQIQR---YAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEK  132 (336)
T ss_dssp             HHHHHHHHTSCTTCEECCHHHHHHHHH---HCGGGSSCCCBCHHHHHHHHHHHHHHHTCCC------------CCCHHHH
T ss_pred             HHHHHHHHhCCCCCCCCchhhhccccc---ccccccCcccccHHHHHHHHHHHHHHHHhhhhcccccCccccccccchhh
Confidence            345555543 45677888888888876   456799999999999999999999998754321                 


Q ss_pred             -----hhccCCCCchhhhhhcceehhhhccCCcCCCC
Q psy13474         64 -----EDMCGAKHCIPHEKFAMTLVEQSVCGACGATS   95 (105)
Q Consensus        64 -----~d~c~~~~Ci~H~~F~m~l~Eq~vC~~Cg~~S   95 (105)
                           ..............|...+.+...|..|+..+
T Consensus       133 ~~~~~~~~~~~~~~~i~~~f~~~~~~~~~c~~~~~~~  169 (336)
T d2hd5a1         133 GRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCS  169 (336)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHCEEEEEEEEETTTCCEE
T ss_pred             HHHHHHhhhccccchhhhhhhhheeeeeeccccCcee
Confidence                 01234556778889999999999999998754

>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.81  E-value=0.00048  Score=49.25  Aligned_cols=60  Identities=18%  Similarity=0.238  Sum_probs=47.3

Q ss_pred             CHHHhhhhhhcCCCCCChHHHHHHHHhhch----hhhhhcccccCcHHHHHHHHHHHhhhccCC
Q psy13474          1 MQELFSQLQSSHESALPPDALRRALAEAFF----DQQRFQLGFMDDAAECFENMLLRIHYHIAS   60 (105)
Q Consensus         1 l~~iF~~~~~s~~~~l~p~~LR~ALa~~~~----~~~~Fq~G~M~DA~E~fe~IL~~lH~~~~~   60 (105)
                      |+.||.+++.++.+++.|..+.++|.+.++    ....|..+...||.|.|..+|+.||..+..
T Consensus        62 l~~l~~~l~~~~~~~i~p~~~~~~l~~~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~l~~  125 (397)
T d1vjva_          62 MKRCFENLQNKSFKSVLPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD  125 (397)
T ss_dssp             HHHHHHHHHCC-CCEECCHHHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHhCCCCccCHHHHHHHHHHHhhhhccccccccccccccHHHHHHHHHHHHHHHhcc
Confidence            467888888889999999999999988754    335577888999999999999999998754