Psyllid ID: psy13476

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------
Protein Sequence
MTELQTLDVLEGLGLENQMVHYVSASALTAQARQSTTPSHPDLFGQLLKKAGGMGDIRDCPSACGAKIQIRRTLMNRPEIVSVGVVWDSDRPSLEHIMAVLGTLRTSLRLSDVFHGCDNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTIFFFLSG
Secondary Structure (PSIPRED)
ccccccHHHHHHccccEEcEEEEEHHHHHHHHHHccccccccHHHHHHHHHcccccccccccccccccEEEEEccccccEEEEEEEEccccccHHHHHHHHHcccccccccccccccccccccccEEEEEEEEEEEccEEEEEEEEccccEEEEEEccEEEEEcccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHcccccHEEEEEcHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccccccccHEEEEHcccccEEEEEEEEccccccHHHHHHHHHHccccccHHHHHcccccHHccccEEEEEEEEEEEccEEEEEEEEccccEEEEEEcccEEEccccHHHHHHHHHcc
Coil and Loop (DISEMBL)
MTELQTLDVLEGLGLENQMVHYVSASALtaqarqsttpshpdLFGQLLKKaggmgdirdcpsacGAKIQIRRTLMNRPEIVSVGvvwdsdrpsLEHIMAVLGTLRtslrlsdvfhgcdnaaastplhQLVGVVTYYgkhystfffhtKLKVWIYfddatvrevgprwEQTIFFFLSG
Flexible Loop (DISEMBL)
MTELQTLDVLEGLGLENQMVHYVSASALTAQARQSTTPSHPDLFGQLLKKAGGMGDIRDCPSACGAKIQIrrtlmnrpeIVSVgvvwdsdrpSLEHIMAVLGTLRTSLRLSDVFHGCDNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTIFFFLSG
Low Complexity Region (SEG)
MTELQTLDVLEGLGLENQMVHYVSASALTAQARQSTTPSHPDLFGQLLKKAGGMGDIRDCPSACGAKIQIRRTLMNRPEIVSVGVVWDSDRPSLEHIMAVLGTLRTSLRLSDVFHGCDNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTIFFFLSG
Disordered region (IsUnstruct)
******LDVLEGLGLENQMVHYVSAS****************LFGQLLKKAGGMGDIRDCPSACGAKIQIRRTLMNRPEIVSVGVVWDSDRPSLEHIMAVLGTLRTSLRLSDVFHGCDNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTIFFFL**
Disordered Region (DISOPRED)
**ELQTLDVLEGLGLENQMVHYVSASALTA*************FGQLLKKAGGMGDIRDCPSACGAKIQIRRTLMNRPEIVSVGVVWDSDRPSLEHIMAVLGTLRTSLRLSDVFHGCDNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTIFFFLSG
Disordered Region (DISEMBL)
MTELQTLDVLEGLGLENQMVHYVSASAL***********HPDLFGQLLKKAGGMGDIRDCPSACGAKIQIRRTLMNRPEIVSVGVVWDSDRPSLEHIMAVLGTLRTSLRLSDVFHGCDNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTIFFFLSG
Disordered Region (DISPRO)
**ELQTLDVLEGLGLENQMVHYVSASALTAQARQSTTPSHPDLFGQLLKKAGGMGDIRDCPSACGAKIQIRRTLMNRPEIVSVGVVWDSDRPSLEHIMAVLGTLRTSLRLSDVFHGCDNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTIFFFLSG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTELQTLDVLEGLGLENQMVHYVSASALTAQARQSTTPSHPDLFGQLLKKAGGMGDIRDCPSACGAKIQIRRTLMNRPEIVSVGVVWDSDRPSLEHIMAVLGTLRTSLRLSDVFHGCDNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTIFFFLSG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	177	2.2.26 [Sep-21-2011]
Q6IE24	1588	Inactive ubiquitin carbox	yes	N/A	0.875	0.097	0.493	6e-41
Q70EL1	1684	Inactive ubiquitin carbox	yes	N/A	0.875	0.092	0.487	2e-40
Q8BL06	1588	Inactive ubiquitin carbox	yes	N/A	0.875	0.097	0.487	2e-40
Q70EK8	1073	Inactive ubiquitin carbox	no	N/A	0.858	0.141	0.407	1e-30
P15975	1069	Inactive ubiquitin carbox	no	N/A	0.853	0.141	0.417	2e-29

>sp|Q6IE24|UBP54_RAT Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Rattus norvegicus GN=Usp54 PE=2 SV=2

 Score =  166 bits (421), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 82/166 (49%), Positives = 115/166 (69%), Gaps = 11/166 (6%)

Query: 18  QMVHYVSASALTAQA----RQSTTPSHPDLFGQLLKKAGGMGDIRDCPSACGAKIQIRRT 73
           QMVHY+S ++L  QA     +   PS P +FG+LL+ A  MGD+RDCPS CG +I+IRR 
Sbjct: 180 QMVHYISTTSLCNQAICMLEKREKPS-PGMFGELLQNASTMGDLRDCPSNCGERIRIRRV 238

Query: 74  LMNRPEIVSVGVVWDSDRPSL-EHIMAVLGTLRTSLRLSDVF-HGCDNAAASTPLHQLVG 131
           LMN P+I+++G+VWDSD   L E ++  LGT    L+L D+F    D+ A  + L+ LVG
Sbjct: 239 LMNAPQIITIGLVWDSDHSDLAEDVIHSLGTC---LKLGDLFFRVTDDRAKQSELY-LVG 294

Query: 132 VVTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTIFFFLSG 177
           ++ YYGKHYSTFFF TK++ W+YFDDA V+E+GP+W+  +   + G
Sbjct: 295 MICYYGKHYSTFFFQTKIRKWMYFDDAHVKEIGPKWKDVVTKCIKG 340

Has no peptidase activity.
Rattus norvegicus (taxid: 10116)

>sp|Q70EL1|UBP54_HUMAN Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Homo sapiens GN=USP54 PE=1 SV=4

 Score =  165 bits (417), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 81/166 (48%), Positives = 115/166 (69%), Gaps = 11/166 (6%)

Query: 18  QMVHYVSASALTAQA----RQSTTPSHPDLFGQLLKKAGGMGDIRDCPSACGAKIQIRRT 73
           QMVHY+S ++L  QA     +   PS P +FG+LL+ A  MGD+R+CPS CG +I+IRR 
Sbjct: 180 QMVHYISTTSLCNQAICMLERREKPS-PSMFGELLQNASTMGDLRNCPSNCGERIRIRRV 238

Query: 74  LMNRPEIVSVGVVWDSDRPSL-EHIMAVLGTLRTSLRLSDVF-HGCDNAAASTPLHQLVG 131
           LMN P+I+++G+VWDSD   L E ++  LGT    L+L D+F    D+ A  + L+ LVG
Sbjct: 239 LMNAPQIITIGLVWDSDHSDLAEDVIHSLGTC---LKLGDLFFRVTDDRAKQSELY-LVG 294

Query: 132 VVTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTIFFFLSG 177
           ++ YYGKHYSTFFF TK++ W+YFDDA V+E+GP+W+  +   + G
Sbjct: 295 MICYYGKHYSTFFFQTKIRKWMYFDDAHVKEIGPKWKDVVTKCIKG 340

Has no peptidase activity.

Homo sapiens (taxid: 9606)

>sp|Q8BL06|UBP54_MOUSE Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Mus musculus GN=Usp54 PE=1 SV=2

 Score =  164 bits (416), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 81/166 (48%), Positives = 115/166 (69%), Gaps = 11/166 (6%)

Query: 18  QMVHYVSASALTAQA----RQSTTPSHPDLFGQLLKKAGGMGDIRDCPSACGAKIQIRRT 73
           QMVHY+S +AL  QA     +   PS P +FG+LL+ A  MGD+R+CPS CG +I+IRR 
Sbjct: 180 QMVHYISTTALCNQAICMLEKREKPS-PSMFGELLQNASTMGDLRNCPSNCGERIRIRRV 238

Query: 74  LMNRPEIVSVGVVWDSDRPSL-EHIMAVLGTLRTSLRLSDVF-HGCDNAAASTPLHQLVG 131
           LMN P+I+++G+VWDS+   L E ++  LGT    L+L D+F    D+ A  + L+ LVG
Sbjct: 239 LMNAPQIITIGLVWDSEHSDLAEDVIHSLGTC---LKLGDLFFRVTDDRAKQSELY-LVG 294

Query: 132 VVTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTIFFFLSG 177
           ++ YYGKHYSTFFF TK++ W+YFDDA V+E+GP+W+  +   + G
Sbjct: 295 MICYYGKHYSTFFFQTKIRKWMYFDDAHVKEIGPKWKDVVTKCIKG 340

Has no peptidase activity.

Mus musculus (taxid: 10090)

>sp|Q70EK8|UBP53_HUMAN Inactive ubiquitin carboxyl-terminal hydrolase 53 OS=Homo sapiens GN=USP53 PE=2 SV=2

 Score =  132 bits (332), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 64/157 (40%), Positives = 91/157 (57%), Gaps = 5/157 (3%)

Query: 18  QMVHYVSASALTAQARQSTTPSH---PDLFGQLLKKAGGMGDIRDCPSACGAKIQIRRTL 74
           + V Y+S +AL  +  +         P++F +LL+ A    D R CPS CG KI+IRR L
Sbjct: 179 EFVRYISTTALCNEVERMLERHERFKPEMFAELLQAANTTDDYRKCPSNCGQKIKIRRVL 238

Query: 75  MNRPEIVSVGVVWDSDRPSLEHIMAVLGTLRTSLRLSDVFHGCDNAAASTPLHQLVGVVT 134
           MN PEIV++G+VWDS+   L    AV+  L T L L  +F+   +  A      LVG++ 
Sbjct: 239 MNCPEIVTIGLVWDSEHSDLTE--AVVRNLATHLYLPGLFYRVTDENAKNSELNLVGMIC 296

Query: 135 YYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTI 171
           Y  +HY  F FHTK   W++FDDA V+E+G RW+  +
Sbjct: 297 YTSQHYCAFAFHTKSSKWVFFDDANVKEIGTRWKDVV 333

Has no peptidase activity.

Homo sapiens (taxid: 9606)

>sp|P15975|UBP53_MOUSE Inactive ubiquitin carboxyl-terminal hydrolase 53 OS=Mus musculus GN=Usp53 PE=2 SV=2

 Score =  128 bits (321), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/158 (41%), Positives = 95/158 (60%), Gaps = 7/158 (4%)

Query: 18  QMVHYVSASALTAQARQSTTPSH---PDLFGQLLKKAGGMGDIRDCPSACGAKIQIRRTL 74
           ++V Y+S +AL  +  +         P++F +LL+ A    D R CPS CG KI+IRR L
Sbjct: 179 ELVRYISTTALCNEVERMMERHERVKPEMFAELLQAANTADDYRKCPSNCGQKIKIRRVL 238

Query: 75  MNRPEIVSVGVVWDSDRPSLEHIMAVLGTLRTSLRLSDVFHG-CDNAAASTPLHQLVGVV 133
           MN PEIV++G+VWDS+   L     V+ +L T L L  +F+   D  A  + LH LVG++
Sbjct: 239 MNCPEIVTIGLVWDSEHSDL--TEDVVRSLATHLYLPGLFYRVTDENATDSELH-LVGMI 295

Query: 134 TYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTI 171
            Y  +HY  F FHTK   W++FDDA V+E+G RW+  +
Sbjct: 296 CYTSRHYCAFAFHTKSSKWVFFDDAHVKEMGTRWKDVV 333

Has no peptidase activity.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
328720253	1977	PREDICTED: hypothetical protein LOC10016	0.870	0.077	0.814	2e-72
383856832	1898	PREDICTED: uncharacterized protein LOC10	0.870	0.081	0.789	3e-69
307191022	1898	Inactive ubiquitin carboxyl-terminal hyd	0.870	0.081	0.783	8e-69
328782021	1909	PREDICTED: hypothetical protein LOC41103	0.870	0.080	0.789	8e-69
350415842	1967	PREDICTED: hypothetical protein LOC10074	0.870	0.078	0.789	9e-69
340713337	1965	PREDICTED: hypothetical protein LOC10064	0.870	0.078	0.789	9e-69
332020947	1900	Inactive ubiquitin carboxyl-terminal hyd	0.870	0.081	0.770	2e-68
345481254	1925	PREDICTED: hypothetical protein LOC10011	0.870	0.08	0.777	3e-68
307212852	1684	Inactive ubiquitin carboxyl-terminal hyd	0.864	0.090	0.791	5e-68
322792157	1736	hypothetical protein SINV_11478 [Solenop	0.864	0.088	0.762	5e-67

>gi|328720253|ref|XP_001944033.2| PREDICTED: hypothetical protein LOC100161660 [Acyrthosiphon pisum]

 Score =  276 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 127/156 (81%), Positives = 137/156 (87%), Gaps = 2/156 (1%)

Query: 18  QMVHYVSASALTAQARQSTTPSHPDLFGQLLKKAGGMGDIRDCPSACGAKIQIRRTLMNR 77
           QMVHYVSASALTAQ +Q  +    DLFGQLLKKAGGMGDIRDCPSACGAKIQIRRTLMNR
Sbjct: 161 QMVHYVSASALTAQVKQFPSTGQADLFGQLLKKAGGMGDIRDCPSACGAKIQIRRTLMNR 220

Query: 78  PEIVSVGVVWDSDRPSLEHIMAVLGTLRTSLRLSDVFHGC-DNAAASTPL-HQLVGVVTY 135
           PEIVSVG+VWDSDRP+L+HIMA+L TLRTSLRL DVFHG  D    S PL HQLVGVVTY
Sbjct: 221 PEIVSVGIVWDSDRPTLDHIMALLSTLRTSLRLCDVFHGSFDLPNGSMPLQHQLVGVVTY 280

Query: 136 YGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTI 171
           YGKHYSTFF+HTKLK+WIYFDDA VRE+GPRWEQ +
Sbjct: 281 YGKHYSTFFYHTKLKIWIYFDDANVREIGPRWEQVV 316

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856832|ref|XP_003703911.1| PREDICTED: uncharacterized protein LOC100875973 [Megachile rotundata]

 Score =  266 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 124/157 (78%), Positives = 139/157 (88%), Gaps = 3/157 (1%)

Query: 18  QMVHYVSASALTAQARQS--TTPSHPDLFGQLLKKAGGMGDIRDCPSACGAKIQIRRTLM 75
           QMVHYVSASALT+QARQ+  T+ + PDLFGQLL+KAGGMGDIRDCPS+CGAKIQI RTLM
Sbjct: 163 QMVHYVSASALTSQARQTPPTSRNSPDLFGQLLRKAGGMGDIRDCPSSCGAKIQICRTLM 222

Query: 76  NRPEIVSVGVVWDSDRPSLEHIMAVLGTLRTSLRLSDVFHG-CDNAAASTPLHQLVGVVT 134
           NRPEIVSVGVVWDS+RPSLEHIM V  T+ TSLRLSDVFH   D+   ++ +H LVGVVT
Sbjct: 223 NRPEIVSVGVVWDSERPSLEHIMDVFATVGTSLRLSDVFHSVVDSRWGASTVHNLVGVVT 282

Query: 135 YYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTI 171
           YYGKHYSTFFFHTKLKVWIYFDDATV+E+GPRWEQ +
Sbjct: 283 YYGKHYSTFFFHTKLKVWIYFDDATVKEIGPRWEQVV 319

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307191022|gb|EFN74776.1| Inactive ubiquitin carboxyl-terminal hydrolase 54 [Camponotus floridanus]

 Score =  265 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 123/157 (78%), Positives = 137/157 (87%), Gaps = 3/157 (1%)

Query: 18  QMVHYVSASALTAQARQSTTPSH--PDLFGQLLKKAGGMGDIRDCPSACGAKIQIRRTLM 75
           QMVHYVSASALT+QA Q++  S   PDLFGQLL+KAGGMGDIRDCPS+CGAKIQI RTLM
Sbjct: 168 QMVHYVSASALTSQAHQTSLNSRNSPDLFGQLLRKAGGMGDIRDCPSSCGAKIQICRTLM 227

Query: 76  NRPEIVSVGVVWDSDRPSLEHIMAVLGTLRTSLRLSDVFHG-CDNAAASTPLHQLVGVVT 134
           NRPEIVSVGVVWDS+RPSLEHIM V  T+ TSLRLSDVFH   D+   ++ +H LVGVVT
Sbjct: 228 NRPEIVSVGVVWDSERPSLEHIMDVFATVGTSLRLSDVFHSVVDSRWGASTVHNLVGVVT 287

Query: 135 YYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTI 171
           YYGKHYSTFFFHTKLKVWIYFDDATV+E+GPRWEQ +
Sbjct: 288 YYGKHYSTFFFHTKLKVWIYFDDATVKEIGPRWEQVV 324

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328782021|ref|XP_394511.4| PREDICTED: hypothetical protein LOC411038 [Apis mellifera]

 Score =  264 bits (675), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 124/157 (78%), Positives = 137/157 (87%), Gaps = 3/157 (1%)

Query: 18  QMVHYVSASALTAQARQSTTPSH--PDLFGQLLKKAGGMGDIRDCPSACGAKIQIRRTLM 75
           QMVHYVSASALT+QARQ+   S   PDLFGQLL+KAGGMGDIRDCPS+CGAKIQI RTLM
Sbjct: 162 QMVHYVSASALTSQARQTPPNSRNSPDLFGQLLRKAGGMGDIRDCPSSCGAKIQICRTLM 221

Query: 76  NRPEIVSVGVVWDSDRPSLEHIMAVLGTLRTSLRLSDVFHG-CDNAAASTPLHQLVGVVT 134
           NRPEIVSVGVVWDS+RPSLEHIM V  T+ TSLRLSDVFH   D+   ++ +H LVGVVT
Sbjct: 222 NRPEIVSVGVVWDSERPSLEHIMDVFATVGTSLRLSDVFHSVVDSRWGASTVHNLVGVVT 281

Query: 135 YYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTI 171
           YYGKHYSTFFFHTKLKVWIYFDDATV+E+GPRWEQ +
Sbjct: 282 YYGKHYSTFFFHTKLKVWIYFDDATVKEIGPRWEQVV 318

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350415842|ref|XP_003490765.1| PREDICTED: hypothetical protein LOC100744780 [Bombus impatiens]

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 124/157 (78%), Positives = 137/157 (87%), Gaps = 3/157 (1%)

Query: 18  QMVHYVSASALTAQARQSTTPSH--PDLFGQLLKKAGGMGDIRDCPSACGAKIQIRRTLM 75
           QMVHYVSASALT+QARQ+   S   PDLFGQLL+KAGGMGDIRDCPS+CGAKIQI RTLM
Sbjct: 208 QMVHYVSASALTSQARQTPPNSRNSPDLFGQLLRKAGGMGDIRDCPSSCGAKIQICRTLM 267

Query: 76  NRPEIVSVGVVWDSDRPSLEHIMAVLGTLRTSLRLSDVFHG-CDNAAASTPLHQLVGVVT 134
           NRPEIVSVGVVWDS+RPSLEHIM V  T+ TSLRLSDVFH   D+   ++ +H LVGVVT
Sbjct: 268 NRPEIVSVGVVWDSERPSLEHIMDVFATVGTSLRLSDVFHSVVDSRWGASTVHNLVGVVT 327

Query: 135 YYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTI 171
           YYGKHYSTFFFHTKLKVWIYFDDATV+E+GPRWEQ +
Sbjct: 328 YYGKHYSTFFFHTKLKVWIYFDDATVKEIGPRWEQVV 364

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713337|ref|XP_003395201.1| PREDICTED: hypothetical protein LOC100646738 [Bombus terrestris]

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 124/157 (78%), Positives = 137/157 (87%), Gaps = 3/157 (1%)

Query: 18  QMVHYVSASALTAQARQSTTPSH--PDLFGQLLKKAGGMGDIRDCPSACGAKIQIRRTLM 75
           QMVHYVSASALT+QARQ+   S   PDLFGQLL+KAGGMGDIRDCPS+CGAKIQI RTLM
Sbjct: 208 QMVHYVSASALTSQARQTPPNSRNSPDLFGQLLRKAGGMGDIRDCPSSCGAKIQICRTLM 267

Query: 76  NRPEIVSVGVVWDSDRPSLEHIMAVLGTLRTSLRLSDVFHG-CDNAAASTPLHQLVGVVT 134
           NRPEIVSVGVVWDS+RPSLEHIM V  T+ TSLRLSDVFH   D+   ++ +H LVGVVT
Sbjct: 268 NRPEIVSVGVVWDSERPSLEHIMDVFATVGTSLRLSDVFHSVVDSRWGASTVHNLVGVVT 327

Query: 135 YYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTI 171
           YYGKHYSTFFFHTKLKVWIYFDDATV+E+GPRWEQ +
Sbjct: 328 YYGKHYSTFFFHTKLKVWIYFDDATVKEIGPRWEQVV 364

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020947|gb|EGI61340.1| Inactive ubiquitin carboxyl-terminal hydrolase 54 [Acromyrmex echinatior]

 Score =  263 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 121/157 (77%), Positives = 138/157 (87%), Gaps = 3/157 (1%)

Query: 18  QMVHYVSASALTAQARQS--TTPSHPDLFGQLLKKAGGMGDIRDCPSACGAKIQIRRTLM 75
           QMVHYVSASALT+QA Q+   + ++PDLFGQLL++AGGMGDIRDCPS+CGAKIQI RTLM
Sbjct: 167 QMVHYVSASALTSQAHQTPLNSRNNPDLFGQLLRRAGGMGDIRDCPSSCGAKIQICRTLM 226

Query: 76  NRPEIVSVGVVWDSDRPSLEHIMAVLGTLRTSLRLSDVFHG-CDNAAASTPLHQLVGVVT 134
           NRPEIVSVGVVWDS+RPSLEHIM V  T+ TSLRLSDVFH   D+   ++ +H LVGVVT
Sbjct: 227 NRPEIVSVGVVWDSERPSLEHIMDVFATVGTSLRLSDVFHSVVDSRWGASTVHNLVGVVT 286

Query: 135 YYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTI 171
           YYGKHYSTFFFHTKLKVWIYFDDATV+E+GPRWEQ +
Sbjct: 287 YYGKHYSTFFFHTKLKVWIYFDDATVKEIGPRWEQVV 323

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345481254|ref|XP_001603677.2| PREDICTED: hypothetical protein LOC100119988 [Nasonia vitripennis]

 Score =  263 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 122/157 (77%), Positives = 136/157 (86%), Gaps = 3/157 (1%)

Query: 18  QMVHYVSASALTAQARQSTTPSH--PDLFGQLLKKAGGMGDIRDCPSACGAKIQIRRTLM 75
           QMVHYVSASALT+QARQ+   +   PDLFGQLL++AGGMGDIR CPS+CGAKIQI RTLM
Sbjct: 153 QMVHYVSASALTSQARQTLPAARGSPDLFGQLLRRAGGMGDIRGCPSSCGAKIQICRTLM 212

Query: 76  NRPEIVSVGVVWDSDRPSLEHIMAVLGTLRTSLRLSDVFHG-CDNAAASTPLHQLVGVVT 134
           NRPEIVSVGVVWDS+RPSLEHIM V  T+ TSLRLSDVFH   D+   +T +H LVGVVT
Sbjct: 213 NRPEIVSVGVVWDSERPSLEHIMDVFATVGTSLRLSDVFHSVVDSRWGATTVHNLVGVVT 272

Query: 135 YYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTI 171
           YYGKHYSTFFFHTKLKVWIYFDDATV+E+GPRWEQ +
Sbjct: 273 YYGKHYSTFFFHTKLKVWIYFDDATVKEIGPRWEQVV 309

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307212852|gb|EFN88483.1| Inactive ubiquitin carboxyl-terminal hydrolase 54 [Harpegnathos saltator]

 Score =  262 bits (669), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 125/158 (79%), Positives = 138/158 (87%), Gaps = 5/158 (3%)

Query: 18  QMVHYVSASALTAQARQSTTPSH---PDLFGQLLKKAGGMGDIRDCPSACGAKIQIRRTL 74
           QMVHYVSASALT+QARQ T+PS    PDLFGQLL+KAGGMGDIRDCPS+CGAKIQI RTL
Sbjct: 63  QMVHYVSASALTSQARQ-TSPSSRNSPDLFGQLLRKAGGMGDIRDCPSSCGAKIQICRTL 121

Query: 75  MNRPEIVSVGVVWDSDRPSLEHIMAVLGTLRTSLRLSDVFHG-CDNAAASTPLHQLVGVV 133
           MNRPEIVSVGVVWDS+RPSLEHIM V  T+ T LRLSDVFH   D+   ++ +H LVGVV
Sbjct: 122 MNRPEIVSVGVVWDSERPSLEHIMDVFATVGTCLRLSDVFHSVVDSRWGASTVHNLVGVV 181

Query: 134 TYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTI 171
           TYYGKHYSTFFFHTKLKVWIYFDDATV+E+GPRWEQ +
Sbjct: 182 TYYGKHYSTFFFHTKLKVWIYFDDATVKEIGPRWEQVV 219

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322792157|gb|EFZ16209.1| hypothetical protein SINV_11478 [Solenopsis invicta]

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 119/156 (76%), Positives = 136/156 (87%), Gaps = 3/156 (1%)

Query: 19  MVHYVSASALTAQARQS--TTPSHPDLFGQLLKKAGGMGDIRDCPSACGAKIQIRRTLMN 76
           MVHYVSASALT+QA Q+   + ++PDLFGQLL++AGGMGDIRDCPS+CGAKIQI RTLMN
Sbjct: 1   MVHYVSASALTSQAHQTPLNSRNNPDLFGQLLRRAGGMGDIRDCPSSCGAKIQICRTLMN 60

Query: 77  RPEIVSVGVVWDSDRPSLEHIMAVLGTLRTSLRLSDVFHGC-DNAAASTPLHQLVGVVTY 135
           RPEIVSVGVVWDS+RPSLEHIM V  T+ TSLRLSDVFH   D+   +  +H LVGVVTY
Sbjct: 61  RPEIVSVGVVWDSERPSLEHIMDVFATVGTSLRLSDVFHSVIDSRWGANTVHNLVGVVTY 120

Query: 136 YGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTI 171
           YGKHYSTFFFHTKLKVWIYFDDATV+E+GPRW+Q +
Sbjct: 121 YGKHYSTFFFHTKLKVWIYFDDATVKEIGPRWDQVV 156

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
FB|FBgn0000542	1765	ec "echinus" [Drosophila melan	0.864	0.086	0.634	5.4e-49
UNIPROTKB|E1BU81	891	E1BU81 "Uncharacterized protei	0.881	0.175	0.490	3.6e-38
ZFIN|ZDB-GENE-090828-2	1497	usp54a "ubiquitin specific pep	0.881	0.104	0.496	6.4e-38
UNIPROTKB|G8JLB5	744	USP54 "Inactive ubiquitin carb	0.881	0.209	0.484	7e-38
RGD|1303206	1588	Usp54 "ubiquitin specific pept	0.881	0.098	0.490	1.5e-37
UNIPROTKB|Q6IE24	1588	Usp54 "Inactive ubiquitin carb	0.881	0.098	0.490	1.5e-37
UNIPROTKB|F1PG31	1637	USP54 "Uncharacterized protein	0.881	0.095	0.484	4.1e-37
UNIPROTKB|F1SU56	1647	USP54 "Uncharacterized protein	0.881	0.094	0.484	4.1e-37
UNIPROTKB|Q70EL1	1684	USP54 "Inactive ubiquitin carb	0.881	0.092	0.484	4.3e-37
UNIPROTKB|E1BC75	1689	USP54 "Uncharacterized protein	0.881	0.092	0.484	4.3e-37

FB|FBgn0000542 ec "echinus" [Drosophila melanogaster (taxid:7227)]

 Score = 525 (189.9 bits), Expect = 5.4e-49, P = 5.4e-49
 Identities = 99/156 (63%), Positives = 119/156 (76%)

Query:    18 QMVHYVSASALTAQARQSTTPSHPDL-FGQLLKKAGGMGDIRDCPSACGAKIQIRRTLMN 76
             QMVHYVSASALT+Q +     SH  L FGQLL+ AG MGDIRDCP+ CGAKI I R L+N
Sbjct:   241 QMVHYVSASALTSQ-KSLALQSHQQLSFGQLLRAAGNMGDIRDCPNTCGAKIGICRALLN 299

Query:    77 RPEIVSVGVVWDSDRPSLEHIMAVLGTLRTSLRLSDVFHGCDNAA-ASTPLHQLVGVVTY 135
             RPE+VS+G+VWDS+RP+ + + AVL  + TSLRL DVFH       A    H+LVG+V+Y
Sbjct:   300 RPEVVSIGIVWDSERPAADQVHAVLKAVGTSLRLGDVFHQVSEPRWAQQTQHELVGIVSY 359

Query:   136 YGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTI 171
             YGKHY+TFFFHTKLKVW+YFDDA V+EVGP WE  +
Sbjct:   360 YGKHYTTFFFHTKLKVWVYFDDANVKEVGPSWEGVV 395

GO:0046667 "compound eye retinal cell programmed cell death" evidence=IMP;TAS

GO:0046666 "retinal cell programmed cell death" evidence=TAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA;NAS

GO:0008157 "protein phosphatase 1 binding" evidence=IPI

GO:0001745 "compound eye morphogenesis" evidence=IMP

GO:0004843 "ubiquitin-specific protease activity" evidence=IDA

GO:0016579 "protein deubiquitination" evidence=IDA

GO:0016318 "ommatidial rotation" evidence=IMP

UNIPROTKB|E1BU81 E1BU81 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 418 (152.2 bits), Expect = 3.6e-38, P = 3.6e-38
 Identities = 81/165 (49%), Positives = 115/165 (69%)

Query:    18 QMVHYVSASALTAQA----RQSTTPSHPDLFGQLLKKAGGMGDIRDCPSACGAKIQIRRT 73
             QMVHY+S ++L  QA     +   P+ PD+FG+LL+ A  MGD+R+CPS CG KI+IRR 
Sbjct:   180 QMVHYISTTSLCNQAICMLERREKPT-PDMFGELLQNASTMGDLRNCPSNCGEKIRIRRV 238

Query:    74 LMNRPEIVSVGVVWDSDRPSLEHIMAVLGTLRTSLRLSDVFHGC-DNAAASTPLHQLVGV 132
             LMN P+I+++G+VWDSD   L     V+ +L T L+L D+F    D+ A  + L+ LVG+
Sbjct:   239 LMNSPQIITIGLVWDSDHSDLAE--DVIHSLGTCLKLGDLFFRVTDDRAKHSELY-LVGM 295

Query:   133 VTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTIFFFLSG 177
             + YYGKHYSTFFF TK++ W+YFDDA V+E+GP+W+  +   + G
Sbjct:   296 ICYYGKHYSTFFFQTKIRKWMYFDDAHVKEIGPKWKDVVTKCIKG 340

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

ZFIN|ZDB-GENE-090828-2 usp54a "ubiquitin specific peptidase 54a" [Danio rerio (taxid:7955)]

 Score = 420 (152.9 bits), Expect = 6.4e-38, P = 6.4e-38
 Identities = 82/165 (49%), Positives = 114/165 (69%)

Query:    18 QMVHYVSASALTAQA---RQSTTPSHPDLFGQLLKKAGGMGDIRDCPSACGAKIQIRRTL 74
             QMVHY+S ++L  QA    +      PD+FG+LL+ A  +GD+R+CP  CG K++IRR L
Sbjct:   180 QMVHYISTTSLCNQAVRMLECREKPTPDMFGELLRNASTVGDLRNCPGNCGEKLRIRRVL 239

Query:    75 MNRPEIVSVGVVWDSDRPSL-EHIMAVLGTLRTSLRLSDVFHGC-DNAAASTPLHQLVGV 132
             MN PEI+++G+VWDSD   L E ++  LGT+   LRL D+F+   ++ A    L+ LVGV
Sbjct:   240 MNSPEIITIGLVWDSDHSDLAEDVIHSLGTV---LRLGDLFYRVTEDKAKQAELY-LVGV 295

Query:   133 VTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTIFFFLSG 177
             V YYGKHYSTFFF TK++ WIYFDDA V+E+GP+W+  +   + G
Sbjct:   296 VCYYGKHYSTFFFQTKIRKWIYFDDAHVKEIGPKWKDVVSRCIKG 340

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|G8JLB5 USP54 "Inactive ubiquitin carboxyl-terminal hydrolase 54" [Homo sapiens (taxid:9606)]

 Score = 413 (150.4 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 80/165 (48%), Positives = 114/165 (69%)

Query:    18 QMVHYVSASALTAQA----RQSTTPSHPDLFGQLLKKAGGMGDIRDCPSACGAKIQIRRT 73
             QMVHY+S ++L  QA     +   PS P +FG+LL+ A  MGD+R+CPS CG +I+IRR 
Sbjct:   180 QMVHYISTTSLCNQAICMLERREKPS-PSMFGELLQNASTMGDLRNCPSNCGERIRIRRV 238

Query:    74 LMNRPEIVSVGVVWDSDRPSLEHIMAVLGTLRTSLRLSDVFHGC-DNAAASTPLHQLVGV 132
             LMN P+I+++G+VWDSD   L     V+ +L T L+L D+F    D+ A  + L+ LVG+
Sbjct:   239 LMNAPQIITIGLVWDSDHSDLAE--DVIHSLGTCLKLGDLFFRVTDDRAKQSELY-LVGM 295

Query:   133 VTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTIFFFLSG 177
             + YYGKHYSTFFF TK++ W+YFDDA V+E+GP+W+  +   + G
Sbjct:   296 ICYYGKHYSTFFFQTKIRKWMYFDDAHVKEIGPKWKDVVTKCIKG 340

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

RGD|1303206 Usp54 "ubiquitin specific peptidase 54" [Rattus norvegicus (taxid:10116)]

 Score = 417 (151.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 81/165 (49%), Positives = 114/165 (69%)

Query:    18 QMVHYVSASALTAQA----RQSTTPSHPDLFGQLLKKAGGMGDIRDCPSACGAKIQIRRT 73
             QMVHY+S ++L  QA     +   PS P +FG+LL+ A  MGD+RDCPS CG +I+IRR 
Sbjct:   180 QMVHYISTTSLCNQAICMLEKREKPS-PGMFGELLQNASTMGDLRDCPSNCGERIRIRRV 238

Query:    74 LMNRPEIVSVGVVWDSDRPSLEHIMAVLGTLRTSLRLSDVFHGC-DNAAASTPLHQLVGV 132
             LMN P+I+++G+VWDSD   L     V+ +L T L+L D+F    D+ A  + L+ LVG+
Sbjct:   239 LMNAPQIITIGLVWDSDHSDLAE--DVIHSLGTCLKLGDLFFRVTDDRAKQSELY-LVGM 295

Query:   133 VTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTIFFFLSG 177
             + YYGKHYSTFFF TK++ W+YFDDA V+E+GP+W+  +   + G
Sbjct:   296 ICYYGKHYSTFFFQTKIRKWMYFDDAHVKEIGPKWKDVVTKCIKG 340

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|Q6IE24 Usp54 "Inactive ubiquitin carboxyl-terminal hydrolase 54" [Rattus norvegicus (taxid:10116)]

 Score = 417 (151.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 81/165 (49%), Positives = 114/165 (69%)

Query:    18 QMVHYVSASALTAQA----RQSTTPSHPDLFGQLLKKAGGMGDIRDCPSACGAKIQIRRT 73
             QMVHY+S ++L  QA     +   PS P +FG+LL+ A  MGD+RDCPS CG +I+IRR 
Sbjct:   180 QMVHYISTTSLCNQAICMLEKREKPS-PGMFGELLQNASTMGDLRDCPSNCGERIRIRRV 238

Query:    74 LMNRPEIVSVGVVWDSDRPSLEHIMAVLGTLRTSLRLSDVFHGC-DNAAASTPLHQLVGV 132
             LMN P+I+++G+VWDSD   L     V+ +L T L+L D+F    D+ A  + L+ LVG+
Sbjct:   239 LMNAPQIITIGLVWDSDHSDLAE--DVIHSLGTCLKLGDLFFRVTDDRAKQSELY-LVGM 295

Query:   133 VTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTIFFFLSG 177
             + YYGKHYSTFFF TK++ W+YFDDA V+E+GP+W+  +   + G
Sbjct:   296 ICYYGKHYSTFFFQTKIRKWMYFDDAHVKEIGPKWKDVVTKCIKG 340

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|F1PG31 USP54 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 413 (150.4 bits), Expect = 4.1e-37, P = 4.1e-37
 Identities = 80/165 (48%), Positives = 114/165 (69%)

Query:    18 QMVHYVSASALTAQA----RQSTTPSHPDLFGQLLKKAGGMGDIRDCPSACGAKIQIRRT 73
             QMVHY+S ++L  QA     +   PS P +FG+LL+ A  MGD+R+CPS CG +I+IRR 
Sbjct:   180 QMVHYISTTSLCNQAICMLERREKPS-PSMFGELLQNASTMGDLRNCPSNCGERIRIRRV 238

Query:    74 LMNRPEIVSVGVVWDSDRPSLEHIMAVLGTLRTSLRLSDVFHGC-DNAAASTPLHQLVGV 132
             LMN P+I+++G+VWDSD   L     V+ +L T L+L D+F    D+ A  + L+ LVG+
Sbjct:   239 LMNAPQIITIGLVWDSDHSDLAE--DVIHSLGTCLKLGDLFFRVTDDRAKQSELY-LVGM 295

Query:   133 VTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTIFFFLSG 177
             + YYGKHYSTFFF TK++ W+YFDDA V+E+GP+W+  +   + G
Sbjct:   296 ICYYGKHYSTFFFQTKIRKWMYFDDAHVKEIGPKWKDVVTKCIKG 340

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

UNIPROTKB|F1SU56 USP54 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 413 (150.4 bits), Expect = 4.1e-37, P = 4.1e-37
 Identities = 80/165 (48%), Positives = 114/165 (69%)

Query:    18 QMVHYVSASALTAQA----RQSTTPSHPDLFGQLLKKAGGMGDIRDCPSACGAKIQIRRT 73
             QMVHY+S ++L  QA     +   PS P +FG+LL+ A  MGD+R+CPS CG +I+IRR 
Sbjct:   139 QMVHYISTTSLCNQAICMLERREKPS-PSMFGELLQNASTMGDLRNCPSNCGERIRIRRV 197

Query:    74 LMNRPEIVSVGVVWDSDRPSLEHIMAVLGTLRTSLRLSDVFHGC-DNAAASTPLHQLVGV 132
             LMN P+I+++G+VWDSD   L     V+ +L T L+L D+F    D+ A  + L+ LVG+
Sbjct:   198 LMNAPQIITIGLVWDSDHSDLAE--DVIHSLGTCLKLGDLFFRVTDDRAKQSELY-LVGM 254

Query:   133 VTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTIFFFLSG 177
             + YYGKHYSTFFF TK++ W+YFDDA V+E+GP+W+  +   + G
Sbjct:   255 ICYYGKHYSTFFFQTKIRKWMYFDDAHVKEIGPKWKDVVTKCIKG 299

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

UNIPROTKB|Q70EL1 USP54 "Inactive ubiquitin carboxyl-terminal hydrolase 54" [Homo sapiens (taxid:9606)]

 Score = 413 (150.4 bits), Expect = 4.3e-37, P = 4.3e-37
 Identities = 80/165 (48%), Positives = 114/165 (69%)

Query:    18 QMVHYVSASALTAQA----RQSTTPSHPDLFGQLLKKAGGMGDIRDCPSACGAKIQIRRT 73
             QMVHY+S ++L  QA     +   PS P +FG+LL+ A  MGD+R+CPS CG +I+IRR 
Sbjct:   180 QMVHYISTTSLCNQAICMLERREKPS-PSMFGELLQNASTMGDLRNCPSNCGERIRIRRV 238

Query:    74 LMNRPEIVSVGVVWDSDRPSLEHIMAVLGTLRTSLRLSDVFHGC-DNAAASTPLHQLVGV 132
             LMN P+I+++G+VWDSD   L     V+ +L T L+L D+F    D+ A  + L+ LVG+
Sbjct:   239 LMNAPQIITIGLVWDSDHSDLAE--DVIHSLGTCLKLGDLFFRVTDDRAKQSELY-LVGM 295

Query:   133 VTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTIFFFLSG 177
             + YYGKHYSTFFF TK++ W+YFDDA V+E+GP+W+  +   + G
Sbjct:   296 ICYYGKHYSTFFFQTKIRKWMYFDDAHVKEIGPKWKDVVTKCIKG 340

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|E1BC75 USP54 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 413 (150.4 bits), Expect = 4.3e-37, P = 4.3e-37
 Identities = 80/165 (48%), Positives = 114/165 (69%)

Query:    18 QMVHYVSASALTAQA----RQSTTPSHPDLFGQLLKKAGGMGDIRDCPSACGAKIQIRRT 73
             QMVHY+S ++L  QA     +   PS P +FG+LL+ A  MGD+R+CPS CG +I+IRR 
Sbjct:   180 QMVHYISTTSLCNQAICMLERREKPS-PSMFGELLQNASTMGDLRNCPSNCGERIRIRRV 238

Query:    74 LMNRPEIVSVGVVWDSDRPSLEHIMAVLGTLRTSLRLSDVFHGC-DNAAASTPLHQLVGV 132
             LMN P+I+++G+VWDSD   L     V+ +L T L+L D+F    D+ A  + L+ LVG+
Sbjct:   239 LMNAPQIITIGLVWDSDHSDLAE--DVIHSLGTCLKLGDLFFRVTDDRAKQSELY-LVGM 295

Query:   133 VTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTIFFFLSG 177
             + YYGKHYSTFFF TK++ W+YFDDA V+E+GP+W+  +   + G
Sbjct:   296 ICYYGKHYSTFFFQTKIRKWMYFDDAHVKEIGPKWKDVVTKCIKG 340

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	177
cd02257	255	cd02257, Peptidase_C19, Peptidase C19 contains ubi	4e-04
pfam00443	313	pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol	0.002

>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 5/40 (12%)

Query: 129 LVGVVTYYGK-----HYSTFFFHTKLKVWIYFDDATVREV 163
           LV VV + G      HY  +        W  F+D  V EV
Sbjct: 195 LVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEV 234

They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 255

>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 5/43 (11%)

Query: 128 QLVGVVTYYGK-----HYSTFFFHTKLKVWIYFDDATVREVGP 165
           +LV VV + G      HY  +    +   W+ FDD  V  V  
Sbjct: 258 ELVAVVVHSGSSLSGGHYIAYIKKREKNKWVKFDDEKVSVVTE 300

Length = 313

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	177
2y6e_A	367	Ubiquitin carboxyl-terminal hydrolase 4; HET: CME;	99.71
3nhe_A	348	Ubiquitin carboxyl-terminal hydrolase 2; cysteine	99.7
3i3t_A	355	Ubiquitin carboxyl-terminal hydrolase 21; hydrolas	99.69
2gfo_A	396	Ubiquitin carboxyl-terminal hydrolase 8; protease,	99.66
1nb8_A	353	Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub	99.66
2ayn_A	404	Ubiquitin carboxyl-terminal hydrolase 14; deubiqui	99.59
1vjv_A	415	Ubiquitin carboxyl-terminal hydrolase 6; YFR010W,	99.58
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	99.58
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	99.54
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	99.15
2vhf_A	374	Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki	97.6

>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}

Probab=99.71  E-value=6.9e-18  Score=144.86  Aligned_cols=125  Identities=22%  Similarity=0.332  Sum_probs=91.8

Q ss_pred             CCCHHHHHHhhcCC-----CCCCcCccccCccceee--eeccCCCcEEEEEEE-ECCCCCChHHHHHHHhhcCcccccCc
Q psy13476         41 PDLFGQLLKKAGGM-----GDIRDCPSACGAKIQIR--RTLMNRPEIVSVGVV-WDSDRPSLEHIMAVLGTLRTSLRLSD  112 (177)
Q Consensus        41 ~~sF~~lL~~~~~~-----~~~~~C~~~CG~~~~i~--~~L~~~P~iftI~L~-W~~~~~~~~~i~~~l~~l~~~LDls~  112 (177)
                      ..++++.|+..-..     .+...|| .|+++....  ..|.++|+||+|+|+ |..+.....++...+.++.+.||++.
T Consensus       210 ~~sL~~~L~~f~~~E~l~~~~~~~C~-~C~~~~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~  288 (367)
T 2y6e_A          210 TVALRDCIELFTTMETLGEHDPWYCP-NCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSE  288 (367)
T ss_dssp             CEEHHHHHHHHTSCEECCC-CCEEET-TTTEEECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGG
T ss_pred             CCCHHHHHHHhcccccCCCCCCccCC-CCCCCceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhh
Confidence            45899999875311     1245895 999776543  359999999999999 44443333445444544445799988


Q ss_pred             cccCCCcccCCCCceeEEEEEEecC----CceEEEEEeccCceEEEEeCCeeeEcCCChHHHH
Q psy13476        113 VFHGCDNAAASTPLHQLVGVVTYYG----KHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTI  171 (177)
Q Consensus       113 ~~~~~~~~~~~~~~Y~L~smVcyyG----~HY~af~~~~~~~~W~~fDDs~V~~vg~~W~~Vv  171 (177)
                      .....+   .....|+|+|||+|+|    +||+||+|+..+++|+.|||+.|++|.  +++|+
T Consensus       289 ~~~~~~---~~~~~Y~L~avv~H~G~~~~GHY~a~~~~~~~~~W~~fnD~~V~~v~--~~~v~  346 (367)
T 2y6e_A          289 FVCNLS---ARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLAS--EDQIV  346 (367)
T ss_dssp             GBSCSS---SCCCEEEEEEEEEEECSSSSCEEEEEEECTTTCCEEEEETTEEEECC--GGGTS
T ss_pred             hccCCC---CCCceEEEEEEeecCCCCCCCeeeEEEEcCCCCeEEEECCCCceECC--HHHcC
Confidence            664321   1246899999999998    699999998878999999999999998  68775

>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A

Probab=99.70  E-value=8.3e-18  Score=141.67  Aligned_cols=123  Identities=14%  Similarity=0.205  Sum_probs=90.3

Q ss_pred             CCHHHHHHhhcCCC-----CCCcCccccCccceeee--eccCCCcEEEEEEEEC-CCCCChHHHHHHHhhcCcccccCcc
Q psy13476         42 DLFGQLLKKAGGMG-----DIRDCPSACGAKIQIRR--TLMNRPEIVSVGVVWD-SDRPSLEHIMAVLGTLRTSLRLSDV  113 (177)
Q Consensus        42 ~sF~~lL~~~~~~~-----~~~~C~~~CG~~~~i~~--~L~~~P~iftI~L~W~-~~~~~~~~i~~~l~~l~~~LDls~~  113 (177)
                      .++.++|+..-...     ....|+ .|+++....+  .|.++|+||+|+|++. .+.....++...+.++.+.||++.+
T Consensus       196 ~sl~~~L~~~~~~e~l~~~~~~~C~-~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~K~~~~v~fp~~~ldl~~~  274 (348)
T 3nhe_A          196 VTLMDCMRLFTKEDVLDGDEKPTCC-RCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREF  274 (348)
T ss_dssp             EEHHHHHHHHHSCEEECGGGCCEET-TTTEECCEEEEEEEEECCSEEEEEECCBCCCSSCCCBCCCCEECCSSCEECGGG
T ss_pred             CCHHHHHHHhcCceEecCCCceECC-CCCCcccEEEEEEeecCCceEEEEEEcccccCCceeecCcceeccCCcCCHhhh
Confidence            48999998763211     124784 9987765433  4999999999999944 3332333444445555578999887


Q ss_pred             ccCCCcccCCCCceeEEEEEEecCC----ceEEEEEeccCceEEEEeCCeeeEcCCChHHHH
Q psy13476        114 FHGCDNAAASTPLHQLVGVVTYYGK----HYSTFFFHTKLKVWIYFDDATVREVGPRWEQTI  171 (177)
Q Consensus       114 ~~~~~~~~~~~~~Y~L~smVcyyG~----HY~af~~~~~~~~W~~fDDs~V~~vg~~W~~Vv  171 (177)
                      .....    ....|+|+|||+|.|.    ||+||+|++..++|+.|||+.|++|.  +++|.
T Consensus       275 ~~~~~----~~~~Y~L~avv~H~G~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~--~~~v~  330 (348)
T 3nhe_A          275 ASENT----NHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMS--SSQVR  330 (348)
T ss_dssp             BCTTC----CCCEEEEEEEEEEEECSSCEEEEEEEECTTTCCEEEEETTEEEEEC--GGGTC
T ss_pred             cCCCC----CCCcEEEEEEEEccCCCCCcccEEEEccCCCCcEEEEeCCCceECC--HHHcC
Confidence            64321    2367999999999995    99999998889999999999999998  67764

>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A

Probab=99.69  E-value=2.4e-17  Score=139.21  Aligned_cols=123  Identities=18%  Similarity=0.242  Sum_probs=89.0

Q ss_pred             CCCHHHHHHhhcCCC-----CCCcCccccCccceeee--eccCCCcEEEEEEE-ECCCCCChHHHHHHHhhcCcccccCc
Q psy13476         41 PDLFGQLLKKAGGMG-----DIRDCPSACGAKIQIRR--TLMNRPEIVSVGVV-WDSDRPSLEHIMAVLGTLRTSLRLSD  112 (177)
Q Consensus        41 ~~sF~~lL~~~~~~~-----~~~~C~~~CG~~~~i~~--~L~~~P~iftI~L~-W~~~~~~~~~i~~~l~~l~~~LDls~  112 (177)
                      ..++.++|+......     ....|+ .|+++....+  .|.++|+||+|+|+ |..+.....++...+.++.+.||++.
T Consensus       205 ~~sl~~~L~~~~~~e~l~~~n~~~C~-~C~~~~~a~k~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~  283 (355)
T 3i3t_A          205 KVSLRDCFNLFTKEEELESENAPVCD-RCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGD  283 (355)
T ss_dssp             -CBHHHHHHHHHCCEEECGGGCCCCS-SSCCCCCEEEEEEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGG
T ss_pred             ccCHHHHHHHhCCccccCCCCCeeCC-CCCCccceEEEEEcccCChheEEEhhheecCCCCceECCcceeCCccccCchh
Confidence            459999998763111     126795 9998876543  48899999999999 66554333444444444446789887


Q ss_pred             cccCCCcccCCCCceeEEEEEEecC----CceEEEEEeccCceEEEEeCCeeeEcCCChHHHHH
Q psy13476        113 VFHGCDNAAASTPLHQLVGVVTYYG----KHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTIF  172 (177)
Q Consensus       113 ~~~~~~~~~~~~~~Y~L~smVcyyG----~HY~af~~~~~~~~W~~fDDs~V~~vg~~W~~Vv~  172 (177)
                      +.....    ....|+|+|||+|+|    +||+||+|.  .++|+.|||+.|++|.  +++|..
T Consensus       284 ~~~~~~----~~~~Y~L~avv~H~G~~~~GHY~~~~~~--~~~W~~~nD~~V~~v~--~~~v~~  339 (355)
T 3i3t_A          284 FASDKA----GSPVYQLYALCNHSGSVHYGHYTALCRC--QTGWHVYNDSRVSPVS--ENQVAS  339 (355)
T ss_dssp             GBC--------CCEEEEEEEEEEEEETTEEEEEEEEEE--TTEEEEEETTEEEEEC--HHHHHT
T ss_pred             hccCCC----CCcceEEEEEEEecCCCCCCeEEEEEEc--CCeEEEEcCCCcEECC--HHHcCC
Confidence            653211    236899999999999    699999995  5679999999999998  788864

>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A

Probab=99.66  E-value=6.1e-17  Score=141.36  Aligned_cols=124  Identities=18%  Similarity=0.256  Sum_probs=90.2

Q ss_pred             CCHHHHHHhhcCC-----CCCCcCccccCccceee--eeccCCCcEEEEEEE-ECCCCCChHHHHHHHhhcCcccccCcc
Q psy13476         42 DLFGQLLKKAGGM-----GDIRDCPSACGAKIQIR--RTLMNRPEIVSVGVV-WDSDRPSLEHIMAVLGTLRTSLRLSDV  113 (177)
Q Consensus        42 ~sF~~lL~~~~~~-----~~~~~C~~~CG~~~~i~--~~L~~~P~iftI~L~-W~~~~~~~~~i~~~l~~l~~~LDls~~  113 (177)
                      .++++.|+..-..     .+...|+ .|+++....  ..|.++|+||+|+|+ |..+.....++...+.++.+.|||+..
T Consensus       248 ~sL~~~L~~f~~~E~l~~~n~~~C~-~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~  326 (396)
T 2gfo_A          248 CTLQDCLRLFSKEEKLTDNNRFYCS-HCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQY  326 (396)
T ss_dssp             EEHHHHHHHHTSCEEECSTTCEEET-TTTEEECEEEEEEEEECCSEEEEEECCEEECSSSEEECCCEEECCSSCBCCGGG
T ss_pred             CCHHHHHHHhCCcccccCCcccccC-CcccccceEEEEEEecCCcEEEEEecceeccCccceecCceEecchhhcccccc
Confidence            4788888876311     1235895 998776443  359999999999999 444432223444444444467999886


Q ss_pred             ccCCCcccCCCCceeEEEEEEecC----CceEEEEEeccCceEEEEeCCeeeEcCCChHHHH
Q psy13476        114 FHGCDNAAASTPLHQLVGVVTYYG----KHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTI  171 (177)
Q Consensus       114 ~~~~~~~~~~~~~Y~L~smVcyyG----~HY~af~~~~~~~~W~~fDDs~V~~vg~~W~~Vv  171 (177)
                      ..+..   .....|+|+|||+|+|    +||+||+++..+++|+.|||+.|++|.  +++|.
T Consensus       327 ~~~~~---~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~--~~~v~  383 (396)
T 2gfo_A          327 VIGPK---NNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDIS--VSSVK  383 (396)
T ss_dssp             BCSCC---SSCCCBEEEEEEEEESCTTTCEEEEEEEETTTTEEEEEETTEEEECC--HHHHS
T ss_pred             ccCCC---CCCceEEEEEEEEecCCCCCCceEEEEcCCCCCCEEEEeCCCeEECC--HHHcC
Confidence            64321   1236799999999998    699999998878999999999999998  68875

>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A

Probab=99.66  E-value=8.3e-17  Score=138.28  Aligned_cols=128  Identities=16%  Similarity=0.149  Sum_probs=87.9

Q ss_pred             CCCHHHHHHhhcC-----CCCCCcCccccCccceeee-eccCCCcEEEEEEEECC-CCC--ChHHHHHHHhhcCcccccC
Q psy13476         41 PDLFGQLLKKAGG-----MGDIRDCPSACGAKIQIRR-TLMNRPEIVSVGVVWDS-DRP--SLEHIMAVLGTLRTSLRLS  111 (177)
Q Consensus        41 ~~sF~~lL~~~~~-----~~~~~~C~~~CG~~~~i~~-~L~~~P~iftI~L~W~~-~~~--~~~~i~~~l~~l~~~LDls  111 (177)
                      ..++.+.|+..-.     ......|+ .|+.....++ .|.++|+||+|+|+... +..  ...++...+ .+|..||++
T Consensus       150 ~~~l~~~L~~~~~~E~l~~~~~~~C~-~c~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v-~fp~~Ldl~  227 (353)
T 1nb8_A          150 KKNIFESFVDYVAVEQLDGDNKYDAG-EHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRF-EFPEQLPLD  227 (353)
T ss_dssp             CSBHHHHHHHHTCCEEECTTTCEECG-GGCEECEEEEEEESCCCSEEEEEECCCC--------CCCCCCC-BCCSEEECG
T ss_pred             CcchHHHHHHhhCccccCCCccccCC-cCccEeeEEEEEhhcCCCceEEEEecEEEecccCceEecCcEE-ECCCeeehh
Confidence            3567777776321     11134684 7875544443 59999999999999433 321  112232222 346789999


Q ss_pred             ccccCCCcccCCCCceeEEEEEEecC----CceEEEEEeccCceEEEEeCCeeeEcCCChHHHHHHH
Q psy13476        112 DVFHGCDNAAASTPLHQLVGVVTYYG----KHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTIFFF  174 (177)
Q Consensus       112 ~~~~~~~~~~~~~~~Y~L~smVcyyG----~HY~af~~~~~~~~W~~fDDs~V~~vg~~W~~Vv~~~  174 (177)
                      .+....++.  ....|+|+|||+|+|    +||+||+|+..+++|+.|||+.|++|.  |++|+..+
T Consensus       228 ~~~~~~~~~--~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~--~~~v~~~~  290 (353)
T 1nb8_A          228 EFLQKTDPK--DPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCT--KEEAIEHN  290 (353)
T ss_dssp             GGBSSCCTT--SCCEEEEEEEEEEESSTTCCCEEEEECTTSSSCCEEEETTEEEECC--HHHHTGGG
T ss_pred             hhhcccCCC--CCceEEEEEEEEEeCCCCCcEEEEEEecCCCCCEEEEECcceEECC--HHHHHHHh
Confidence            876543222  346899999999999    799999998788999999999999998  79987643

>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A

Probab=99.59  E-value=1.3e-15  Score=131.74  Aligned_cols=127  Identities=17%  Similarity=0.192  Sum_probs=87.4

Q ss_pred             CCHHHHHHhhcCCCCCCcCccccCcccee--eeeccCCCcEEEEEEE-ECCCCC--ChHHHHHHHhhcCcccccCccccC
Q psy13476         42 DLFGQLLKKAGGMGDIRDCPSACGAKIQI--RRTLMNRPEIVSVGVV-WDSDRP--SLEHIMAVLGTLRTSLRLSDVFHG  116 (177)
Q Consensus        42 ~sF~~lL~~~~~~~~~~~C~~~CG~~~~i--~~~L~~~P~iftI~L~-W~~~~~--~~~~i~~~l~~l~~~LDls~~~~~  116 (177)
                      .++.+.|+..-...-...|+ .||++...  +..|.++|+||+|+|+ |..+..  ...+|..-+. +|..|||+.+...
T Consensus       194 ~~l~~~L~~~~~e~l~~~c~-~c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~-fP~~Ldl~~~~~~  271 (404)
T 2ayn_A          194 KYLFTGLKLRLQEEITKQSP-TLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVK-FPLMLDMYELCTP  271 (404)
T ss_dssp             CBHHHHHHHTTEECCCCEET-TTTEECCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCB-CCSEEECGGGBCH
T ss_pred             ccHHHHHHHhcccceeecch-hhCCccceeeeeeHhhCCCceEEEEEEEEEecccCceeccCceec-cCceeEHhHhcCh
Confidence            47888887753222235784 89876643  3459999999999999 443322  1122322222 3668999876531


Q ss_pred             C--------------------C--------------------------cccCCCCceeEEEEEEecCC-----ceEEEEE
Q psy13476        117 C--------------------D--------------------------NAAASTPLHQLVGVVTYYGK-----HYSTFFF  145 (177)
Q Consensus       117 ~--------------------~--------------------------~~~~~~~~Y~L~smVcyyG~-----HY~af~~  145 (177)
                      -                    +                          ........|+|+|||+|.|.     ||+||+|
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~  351 (404)
T 2ayn_A          272 ELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVK  351 (404)
T ss_dssp             HHHHHTTTTTGGGTCTTC----------------------CCCCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEE
T ss_pred             hhhhhcchhhhHHhhhhcccchhhhhhccccccccccccccccccccccCcCCCceEEEEEEEEecCCCCCCCCeEEEEE
Confidence            0                    0                          00112367999999999994     9999999


Q ss_pred             eccCceEEEEeCCeeeEcCCChHHHHHH
Q psy13476        146 HTKLKVWIYFDDATVREVGPRWEQTIFF  173 (177)
Q Consensus       146 ~~~~~~W~~fDDs~V~~vg~~W~~Vv~~  173 (177)
                      + .+++|+.|||+.|++|.  |++|+..
T Consensus       352 ~-~~~~W~~fnD~~V~~v~--~~~v~~~  376 (404)
T 2ayn_A          352 R-KQDEWIKFDDDKVSIVT--PEDILRL  376 (404)
T ss_dssp             E-ETTEEEEEBTTBCCCBC--HHHHGGG
T ss_pred             C-CCCeEEEeecccceecC--HHHHHhh
Confidence            6 48899999999999998  7988754

>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9

Probab=99.58  E-value=1.3e-15  Score=132.71  Aligned_cols=128  Identities=19%  Similarity=0.268  Sum_probs=81.4

Q ss_pred             CCHHHHHHhhcCCCCCCcCccccCcccee--eeeccCCCcEEEEEEE-ECCCCC--ChHHHHHHHhhcCcccccCccccC
Q psy13476         42 DLFGQLLKKAGGMGDIRDCPSACGAKIQI--RRTLMNRPEIVSVGVV-WDSDRP--SLEHIMAVLGTLRTSLRLSDVFHG  116 (177)
Q Consensus        42 ~sF~~lL~~~~~~~~~~~C~~~CG~~~~i--~~~L~~~P~iftI~L~-W~~~~~--~~~~i~~~l~~l~~~LDls~~~~~  116 (177)
                      .++.+.|+..-...-...|+ .||++...  +..|.++|+||+|+|+ |..+..  ...+|..-+ .+|..|||+.+...
T Consensus       186 ~~l~~~L~~~~~e~i~~~c~-~c~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V-~FP~~Ldl~~~~~~  263 (415)
T 1vjv_A          186 NFMRNGLLEGLNEKIEKRSD-LTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKV-VFPFQLDVADMLTP  263 (415)
T ss_dssp             CBHHHHHHHHHEEC----------CCCCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCC-BCCSEEECGGGBCH
T ss_pred             chHHHHHHHHhhhhhhhccc-ccCCcccEEEEEEcccCCCeeEEEEEEEEEeCCCCcchhhcCcc-CCCcEeEhHHhcCh
Confidence            47777776653222235784 88876643  3459999999999999 433321  112232222 23668998875421


Q ss_pred             C------------------------------------------------------------------------CcccCCC
Q psy13476        117 C------------------------------------------------------------------------DNAAAST  124 (177)
Q Consensus       117 ~------------------------------------------------------------------------~~~~~~~  124 (177)
                      -                                                                        +......
T Consensus       264 ~~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (415)
T 1vjv_A          264 EYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGENPS  343 (415)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCTTBCSS
T ss_pred             hhhhhhhhhHHHHHHHhhhhhhhhhhhhhccccccccccccccchhhhhchhhHHhhhhhhhhhcccccccccccccCCC
Confidence            0                                                                        0011123


Q ss_pred             CceeEEEEEEecCC-----ceEEEEEe-ccCceEEEEeCCeeeEcCCChHHHHHH
Q psy13476        125 PLHQLVGVVTYYGK-----HYSTFFFH-TKLKVWIYFDDATVREVGPRWEQTIFF  173 (177)
Q Consensus       125 ~~Y~L~smVcyyG~-----HY~af~~~-~~~~~W~~fDDs~V~~vg~~W~~Vv~~  173 (177)
                      ..|+|+|||+|.|.     ||+||+|+ ...++|+.|||+.|++|.  +++|...
T Consensus       344 ~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~--~~~v~~~  396 (415)
T 1vjv_A          344 CVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVE--KEKIESL  396 (415)
T ss_dssp             SEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEEC--HHHHHGG
T ss_pred             ceEEEEEEEEecCCCCCCCCEEEEEeCCCCCCcEEEeECCcCeEcC--HHHHhhh
Confidence            67999999999994     99999997 678999999999999999  7888764

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=99.58  E-value=1.2e-15  Score=137.49  Aligned_cols=126  Identities=17%  Similarity=0.193  Sum_probs=89.0

Q ss_pred             CCCHHHHHHhhcC----CC-CCCcCccccCccceeee-eccCCCcEEEEEEE-ECCCC--CChHHHHHHHhhcCcccccC
Q psy13476         41 PDLFGQLLKKAGG----MG-DIRDCPSACGAKIQIRR-TLMNRPEIVSVGVV-WDSDR--PSLEHIMAVLGTLRTSLRLS  111 (177)
Q Consensus        41 ~~sF~~lL~~~~~----~~-~~~~C~~~CG~~~~i~~-~L~~~P~iftI~L~-W~~~~--~~~~~i~~~l~~l~~~LDls  111 (177)
                      ..++.+.|+..-.    .+ ....|+ .|+.....++ .|.++|+||+|+|+ +..+.  ....++...+ .+|..|||+
T Consensus       319 ~~~l~~~L~~~~~~E~l~~~n~~~C~-~c~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v-~fp~~Ldl~  396 (522)
T 2f1z_A          319 KKNIFESFVDYVAVEQLDGDNKYDAG-EHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRF-EFPEQLPLD  396 (522)
T ss_dssp             CCBHHHHHHHHTCEEEECTTSCBCCG-GGCSBCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCC-BCCSEEECG
T ss_pred             cccchHHHHHhhceeecCCcceeecC-cCCccceEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcEE-eCCCeecch
Confidence            3567777765321    11 234684 7876654444 59999999999999 43332  1223343333 345789999


Q ss_pred             ccccCCCcccCCCCceeEEEEEEecC----CceEEEEEeccCceEEEEeCCeeeEcCCChHHHHH
Q psy13476        112 DVFHGCDNAAASTPLHQLVGVVTYYG----KHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTIF  172 (177)
Q Consensus       112 ~~~~~~~~~~~~~~~Y~L~smVcyyG----~HY~af~~~~~~~~W~~fDDs~V~~vg~~W~~Vv~  172 (177)
                      .+....++.  ....|+|+|||+|+|    +||+||+|+..+++|+.|||+.|++|.  |++|+.
T Consensus       397 ~~~~~~~~~--~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~--~~~v~~  457 (522)
T 2f1z_A          397 EFLQKTDPK--DPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCT--KEEAIE  457 (522)
T ss_dssp             GGBSSCCTT--SCCEEEEEEEEEEECSSSCSEEEEEECTTSSSCCEEEETTEEEECC--HHHHST
T ss_pred             hhhccccCC--CCcEEEEEEEEEecccCCCceEEEEEecCCCCCEEEEECceeEECC--HHHHHH
Confidence            876543222  346899999999999    699999997788999999999999998  788875

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A

Probab=99.54  E-value=3.2e-15  Score=132.57  Aligned_cols=128  Identities=15%  Similarity=0.239  Sum_probs=89.1

Q ss_pred             CCCCHHHHHHhhcCC----CCCCcCccccCccceee--eeccCCCcEEEEEEE-ECCCC-CChHHHHHHHhhcCcccccC
Q psy13476         40 HPDLFGQLLKKAGGM----GDIRDCPSACGAKIQIR--RTLMNRPEIVSVGVV-WDSDR-PSLEHIMAVLGTLRTSLRLS  111 (177)
Q Consensus        40 ~~~sF~~lL~~~~~~----~~~~~C~~~CG~~~~i~--~~L~~~P~iftI~L~-W~~~~-~~~~~i~~~l~~l~~~LDls  111 (177)
                      ...++.+.|+..-..    +....|+ .|+++....  ..|.++|+||+|+|+ |.... ....++...+ .++..||++
T Consensus       317 ~~~sl~~~L~~~~~~E~l~~~~~~C~-~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~K~~~~V-~fP~~Ldl~  394 (476)
T 3mhs_A          317 DKKKLYECLDSFHKKEQLKDFNYHCG-ECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFI-EFPTYLNMK  394 (476)
T ss_dssp             TCCBHHHHHHHHHCCEECSSCCCEET-TTTEECCCEEEEEEEEBCSEEEEEECCEEECTTSCEEECCCCC-BCCSEEECG
T ss_pred             hhhHHHHHHHHhcChhhccCCCCcCC-ccCCcccEEEEEEcccCCcceEEEeeeccccCCCCeEECCEEE-cCCCeeech
Confidence            456899999875311    1236784 898776443  358999999999999 44222 1222333322 346789999


Q ss_pred             ccccCCCc------ccCCCCceeEEEEEEecCC----ceEEEEEeccCceEEEEeCCeeeEcCCChHHHHH
Q psy13476        112 DVFHGCDN------AAASTPLHQLVGVVTYYGK----HYSTFFFHTKLKVWIYFDDATVREVGPRWEQTIF  172 (177)
Q Consensus       112 ~~~~~~~~------~~~~~~~Y~L~smVcyyG~----HY~af~~~~~~~~W~~fDDs~V~~vg~~W~~Vv~  172 (177)
                      .+......      .......|+|+|||+|.|.    ||+||+|. .+++|+.|||+.|++|.  |++|+.
T Consensus       395 ~~~~~~~~~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~vr~-~~~~W~~fnD~~V~~v~--~~~v~~  462 (476)
T 3mhs_A          395 NYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVNEGHYIAFCKI-SGGQWFKFNDSMVSSIS--QEEVLK  462 (476)
T ss_dssp             GGBSCCBCCC--CCCBCCCEEEEEEEEEEEEECSSSEEEEEEEEC-TTSCEEEEETTEEEEEC--HHHHTT
T ss_pred             hhcCcccccccccccCCCCCcEEEEEEEEeCCCCCCCceEEEEEC-CCCcEEEEeCCceEECC--HHHhcc
Confidence            87643211      1122356999999999984    99999974 47899999999999998  788864

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}

Probab=99.15  E-value=1.7e-11  Score=117.01  Aligned_cols=37  Identities=24%  Similarity=0.415  Sum_probs=34.0

Q ss_pred             ceeEEEEEEecC-----CceEEEEEeccCceEEEEeCCeeeEcC
Q psy13476        126 LHQLVGVVTYYG-----KHYSTFFFHTKLKVWIYFDDATVREVG  164 (177)
Q Consensus       126 ~Y~L~smVcyyG-----~HY~af~~~~~~~~W~~fDDs~V~~vg  164 (177)
                      .|.|+|||||.|     +||+||++  ++++|+.|||+.|..+.
T Consensus       796 ~Y~L~avi~H~G~~~~~GHY~~~~~--~~~~W~~~nD~~V~~~~  837 (854)
T 3ihp_A          796 KYQLFAFISHMGTSTMCGHYVCHIK--KEGRWVIYNDQKVCASE  837 (854)
T ss_dssp             EEEEEEEEEEESSCSSCCEEEEEEE--ETTEEEEEETTEEEECS
T ss_pred             eEEEEEEEEeecCCCCCcCeEEEEE--eCCEEEEEECCeeEEcc
Confidence            699999999999     59999999  47999999999999874

>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}

Probab=97.60  E-value=5.7e-05  Score=66.09  Aligned_cols=34  Identities=24%  Similarity=0.469  Sum_probs=29.4

Q ss_pred             CCceeEEEEEEecCCceEEEEEe-ccCceEEEEeC
Q psy13476        124 TPLHQLVGVVTYYGKHYSTFFFH-TKLKVWIYFDD  157 (177)
Q Consensus       124 ~~~Y~L~smVcyyG~HY~af~~~-~~~~~W~~fDD  157 (177)
                      ...|.|+||||=.++||+||+|. +++++|+.||.
T Consensus       274 sg~yeL~aVltadsgHYvafVK~~~~d~~W~~FDs  308 (374)
T 2vhf_A          274 CQNMELFAVLCIETSHYVAFVKYGKDDSAWLFFDS  308 (374)
T ss_dssp             -CCEEEEEEEEEETTEEEEEEECSSSTTCEEEEET
T ss_pred             ceeEEEEEEEEccCCceEEEEEecCCCCCeEEEec
Confidence            36799999999888999999996 35899999994

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	177
d2gfoa1	348	d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h	1e-06
d2hd5a1	336	d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy	6e-06
d1nbfa_	347	d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase	3e-05
d2ayna1	383	d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy	3e-05
d1vjva_	397	d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase	8e-05

>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 1e-06
 Identities = 23/169 (13%), Positives = 53/169 (31%), Gaps = 4/169 (2%)

Query: 1   MTELQTLDVLEGLGLENQMVHYVSASALTAQARQSTTPSHPDLFGQLLKKAGGMGDIRDC 60
           + + Q    ++ L    +   + +   L+     ++  +  D      K+     + R  
Sbjct: 164 LFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFY 223

Query: 61  PSACGAKIQIRRTLMNRPEIVSVGVVWDSDRPSLEHIMAVLGTLRTSLRLSDVFHGCDNA 120
            S C A+    + +        + V              +  ++   L   D+       
Sbjct: 224 CSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGP 283

Query: 121 AASTPLHQLVGVVTYYGK----HYSTFFFHTKLKVWIYFDDATVREVGP 165
             +   + L  V  +YG     HY+ +  +   + W  FDD  V ++  
Sbjct: 284 KNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISV 332

>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 6e-06
 Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 123 STPLHQLVGVVTYYGK----HYSTFFFHTKLKVWIYFDDATVREVGP 165
           +  ++ L  V  + G     HY+ +        W  F+D++V  +  
Sbjct: 274 NHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSS 320

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 3e-05
 Identities = 19/154 (12%), Positives = 38/154 (24%), Gaps = 5/154 (3%)

Query: 15  LENQMVHYVSASALTAQARQSTTPSHPDLFGQLLKKAGGMGDIRDCPSACGAKIQIRRTL 74
            E              Q       +  + F   +      GD +      G +   +   
Sbjct: 128 KEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVK 187

Query: 75  MNR-PEIVSVGVVWDSDRPSLEHIMAVLGTLRTSLRLSDVFHGCDNAAASTPLHQLVGVV 133
               P ++ + ++     P  +  + +        +L                + L  V+
Sbjct: 188 FLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVL 247

Query: 134 TYYGK----HYSTFFFHTKLKVWIYFDDATVREV 163
            + G     HY  +        W  FDD  V   
Sbjct: 248 VHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRC 281

>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 3e-05
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 118 DNAAASTPLHQLVGVVTYYGK-----HYSTFFFHTKLKVWIYFDDATVREVGP 165
           D  + +   + L  V+T+ G+     HY   +   K   WI FDD  V  V P
Sbjct: 309 DIGSNNCGYYDLQAVLTHQGRSSSSGHY-VSWVKRKQDEWIKFDDDKVSIVTP 360

>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (91), Expect = 8e-05
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 6/52 (11%)

Query: 118 DNAAASTPLHQLVGVVTYYGK-----HYSTF-FFHTKLKVWIYFDDATVREV 163
           +     + ++ L+GV+T+ G      HY  F         W  F+D  V  V
Sbjct: 319 EKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVV 370

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	177
d1nbfa_	347	Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU	99.62
d2hd5a1	336	Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum	99.53
d2gfoa1	348	Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho	99.47
d2ayna1	383	Ubiquitin carboxyl-terminal hydrolase 14 {Human (H	99.43
d1vjva_	397	Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y	99.0

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=7.2e-17  Score=134.92  Aligned_cols=131  Identities=16%  Similarity=0.170  Sum_probs=86.8

Q ss_pred             CCCCHHHHHHhhcC----CCCCCcCccccCccceee-eeccCCCcEEEEEEE-ECCCCC--ChHHHHHHHhhcCcccccC
Q psy13476         40 HPDLFGQLLKKAGG----MGDIRDCPSACGAKIQIR-RTLMNRPEIVSVGVV-WDSDRP--SLEHIMAVLGTLRTSLRLS  111 (177)
Q Consensus        40 ~~~sF~~lL~~~~~----~~~~~~C~~~CG~~~~i~-~~L~~~P~iftI~L~-W~~~~~--~~~~i~~~l~~l~~~LDls  111 (177)
                      ...+..+.|...-.    .++...|...|+.....+ ..+.++|++|+|+|+ |..+..  ...++...+ .++..|||+
T Consensus       149 ~~~~~~~~l~~~~~~e~l~~~~~~~~~~~~~~~~~k~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v-~fp~~Ldl~  227 (347)
T d1nbfa_         149 GKKNIFESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRF-EFPEQLPLD  227 (347)
T ss_dssp             TCCBHHHHHHHHTCCEEECGGGCEECSTTCEECEEEEEEEEECCSEEEEEEECEEEETTTTEEEECCCCC-BCCSEEECG
T ss_pred             cccchhhhHHhhcchheeccccccccccCcceeccEEEEEEecCChheEeeeeeeeccccCcccccCceE-eeeeeeccc
Confidence            34566666655421    122223323454444333 358899999999999 543222  112222222 246789998


Q ss_pred             ccccCCCcccCCCCceeEEEEEEecCC----ceEEEEEeccCceEEEEeCCeeeEcCCChHHHHHHHh
Q psy13476        112 DVFHGCDNAAASTPLHQLVGVVTYYGK----HYSTFFFHTKLKVWIYFDDATVREVGPRWEQTIFFFL  175 (177)
Q Consensus       112 ~~~~~~~~~~~~~~~Y~L~smVcyyG~----HY~af~~~~~~~~W~~fDDs~V~~vg~~W~~Vv~~~~  175 (177)
                      ......++.  ....|.|+|||+|.|.    ||+||+|+..+++|+.|||+.|++|.  |++|+..+.
T Consensus       228 ~~~~~~~~~--~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~~~~~W~~fnD~~V~~v~--~~ev~~~~~  291 (347)
T d1nbfa_         228 EFLQKTDPK--DPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCT--KEEAIEHNY  291 (347)
T ss_dssp             GGBSSCCTT--SCCEEEEEEEEEEEEETTEEEEEEEECTTSSSCCEEEETTEEEECC--HHHHTGGGS
T ss_pred             ccccccccc--CccceeeEEEEEecCCCCCCEEEEeeecCCCCEEEEEECCceEECC--HHHHHHhhc
Confidence            876543222  2467999999999994    99999998888999999999999997  899987653

>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.8e-15  Score=121.27  Aligned_cols=124  Identities=15%  Similarity=0.220  Sum_probs=84.9

Q ss_pred             CCCCHHHHHHhhcCCCC------CCcCccccCccceee--eeccCCCcEEEEEEE-ECCCCCChHHHHHHHhhcCccccc
Q psy13476         40 HPDLFGQLLKKAGGMGD------IRDCPSACGAKIQIR--RTLMNRPEIVSVGVV-WDSDRPSLEHIMAVLGTLRTSLRL  110 (177)
Q Consensus        40 ~~~sF~~lL~~~~~~~~------~~~C~~~CG~~~~i~--~~L~~~P~iftI~L~-W~~~~~~~~~i~~~l~~l~~~LDl  110 (177)
                      +..++.++|+... ...      ...|+ .|.......  ..+.++|++++|+++ |.............+......+|+
T Consensus       188 ~~~~l~~~l~~~~-~~e~l~~~~~~~~~-~~~~~~~~~k~~~~~~~P~~l~i~~~r~~~~~~~~~~~~~~v~~~~~~~dl  265 (336)
T d2hd5a1         188 PEVTLMDCMRLFT-KEDVLDGDEKPTCC-RCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDL  265 (336)
T ss_dssp             --CBHHHHHHHHT-SCEEECGGGCCEET-TTTEECCEEEEEEEEECCSEEEEEEECEECCSSCCEECCCCCBCCSSCEEC
T ss_pred             CCCCHHHHHHhcC-CceEecCccccccc-ccccceeeEEEEEEeecccchhhhhhhhhhccccccccceeEeeccccccc
Confidence            4457888888763 111      11221 333333222  347889999999999 665544332233334455678888


Q ss_pred             CccccCCCcccCCCCceeEEEEEEecCC----ceEEEEEeccCceEEEEeCCeeeEcCCChHHHH
Q psy13476        111 SDVFHGCDNAAASTPLHQLVGVVTYYGK----HYSTFFFHTKLKVWIYFDDATVREVGPRWEQTI  171 (177)
Q Consensus       111 s~~~~~~~~~~~~~~~Y~L~smVcyyG~----HY~af~~~~~~~~W~~fDDs~V~~vg~~W~~Vv  171 (177)
                      +.....-    ....+|.|+|||+|.|.    ||+||+|++++++|+.|||++|++|.  |++|+
T Consensus       266 ~~~~~~~----~~~~~Y~L~~vi~H~G~~~~GHY~~~ik~~~~~~W~~~nD~~V~~v~--~~~v~  324 (336)
T d2hd5a1         266 REFASEN----TNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMS--SSQVR  324 (336)
T ss_dssp             GGGBSSS----SCCCEEEEEEEEEEEECSSCEEEEEEEECTTTCCEEEEETTEEEEEC--GGGSC
T ss_pred             cccccCC----CCCCeEeEEEEEEEeCCCCCceEEEEEEcCCCCeEEEEECCceeECC--HHHhc
Confidence            8755321    12368999999999995    99999999989999999999999996  88875

>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2e-14  Score=117.31  Aligned_cols=126  Identities=18%  Similarity=0.252  Sum_probs=83.1

Q ss_pred             CCCHHHHHHhhcC-----CCCCCcCccccCccceee--eeccCCCcEEEEEEE-ECCCCCChHHHHHHHhhcCcccccCc
Q psy13476         41 PDLFGQLLKKAGG-----MGDIRDCPSACGAKIQIR--RTLMNRPEIVSVGVV-WDSDRPSLEHIMAVLGTLRTSLRLSD  112 (177)
Q Consensus        41 ~~sF~~lL~~~~~-----~~~~~~C~~~CG~~~~i~--~~L~~~P~iftI~L~-W~~~~~~~~~i~~~l~~l~~~LDls~  112 (177)
                      ..++.+.|+..-.     ......| +.|+++....  ..+..+|+++.+++. +..+.............+...+|.+.
T Consensus       200 ~~sl~~~l~~~~~~~~l~~~~~~~c-~~c~~~~~~~~~~~~~~~p~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (348)
T d2gfoa1         200 KCTLQDCLRLFSKEEKLTDNNRFYC-SHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQ  278 (348)
T ss_dssp             EEEHHHHHHHHTSCEEECSTTCEEE-TTTTEEECEEEEEEEEECCSEEEEEECCEEECSSSEEECCCEEECCSSCBCCGG
T ss_pred             cCcHHHHHHHhhhhcccccccceec-cccCcceeeeEEEEEEeCCccceeceeeeeccCccceeeccccccccccccccc
Confidence            3468888876521     1223467 5888766443  347789999999999 33332221111111122234455554


Q ss_pred             cccCCCcccCCCCceeEEEEEEecC----CceEEEEEeccCceEEEEeCCeeeEcCCChHHHHH
Q psy13476        113 VFHGCDNAAASTPLHQLVGVVTYYG----KHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTIF  172 (177)
Q Consensus       113 ~~~~~~~~~~~~~~Y~L~smVcyyG----~HY~af~~~~~~~~W~~fDDs~V~~vg~~W~~Vv~  172 (177)
                      ....   ......+|+|+|||||.|    +||+||+|+..+++|+.|||+.|++|.  |++|++
T Consensus       279 ~~~~---~~~~~~~Y~L~avi~H~G~~~~GHY~~~ik~~~~~~W~~~nD~~V~~v~--~~~v~~  337 (348)
T d2gfoa1         279 YVIG---PKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDIS--VSSVKS  337 (348)
T ss_dssp             GBCS---CCSSCCCBEEEEEEEEESCTTTCEEEEEEEETTTTEEEEEETTEEEECC--HHHHSC
T ss_pred             eecC---CCCCCCCEEEEEEEEEeCCCCCceEEEEEEeCCcCeEEEEECCcCeECC--HHHccC
Confidence            3322   112235799999999998    599999999999999999999999997  899863

>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=9.3e-14  Score=114.95  Aligned_cols=128  Identities=17%  Similarity=0.194  Sum_probs=81.1

Q ss_pred             CCCHHHHHHhhcCCCCCCcCccccCccce--eeeeccCCCcEEEEEEE-ECCCCCC--hHHHHHHHhhcCcccccCcccc
Q psy13476         41 PDLFGQLLKKAGGMGDIRDCPSACGAKIQ--IRRTLMNRPEIVSVGVV-WDSDRPS--LEHIMAVLGTLRTSLRLSDVFH  115 (177)
Q Consensus        41 ~~sF~~lL~~~~~~~~~~~C~~~CG~~~~--i~~~L~~~P~iftI~L~-W~~~~~~--~~~i~~~l~~l~~~LDls~~~~  115 (177)
                      ..++.+.++..-.......|+ .|+++..  .+..+.++|++++|+|+ +..+...  ..++.+-+ .++..||+.....
T Consensus       183 ~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v-~fp~~ldl~~~~~  260 (383)
T d2ayna1         183 VKYLFTGLKLRLQEEITKQSP-TLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDV-KFPLMLDMYELCT  260 (383)
T ss_dssp             CCBHHHHHHHTTEECCCCEET-TTTEECCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCC-BCCSEEECGGGBC
T ss_pred             cchhhhhhhhhhccccccccc-ccCcceeeeeeeeeecccceeeeeccceeecccCcceeecCcEE-ccCCeeechhhcc
Confidence            346667666653233345774 6665443  34569999999999999 4433221  11111111 2345555554331


Q ss_pred             C---------------------------------------------C-CcccCCCCceeEEEEEEecC-----CceEEEE
Q psy13476        116 G---------------------------------------------C-DNAAASTPLHQLVGVVTYYG-----KHYSTFF  144 (177)
Q Consensus       116 ~---------------------------------------------~-~~~~~~~~~Y~L~smVcyyG-----~HY~af~  144 (177)
                      .                                             . +.......+|+|+|||||.|     +||+||+
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~s~~~GHY~a~v  340 (383)
T d2ayna1         261 PELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWV  340 (383)
T ss_dssp             HHHHHHTTTTTGGGTCTTC----------------------CCCCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEE
T ss_pred             hhhhccccchhhhhhhhhhhhhccccCccccccccccccccccccccccccCCCCceEEEEEEEEEECCCCCCCCcEEEE
Confidence            0                                             0 00111234699999999999     3999999


Q ss_pred             EeccCceEEEEeCCeeeEcCCChHHHHHH
Q psy13476        145 FHTKLKVWIYFDDATVREVGPRWEQTIFF  173 (177)
Q Consensus       145 ~~~~~~~W~~fDDs~V~~vg~~W~~Vv~~  173 (177)
                      |+ ++++|+.|||.+|++|.  |++|++.
T Consensus       341 k~-~~~~W~~~nD~~V~~v~--~~~v~~~  366 (383)
T d2ayna1         341 KR-KQDEWIKFDDDKVSIVT--PEDILRL  366 (383)
T ss_dssp             EE-ETTEEEEEBTTBCCCBC--HHHHGGG
T ss_pred             EC-CCCeEEEEECCceEEeC--HHHHHHh
Confidence            86 56899999999999997  8999764

>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.00  E-value=2.6e-10  Score=93.26  Aligned_cols=48  Identities=29%  Similarity=0.459  Sum_probs=41.7

Q ss_pred             CCceeEEEEEEecC-----CceEEEEEec-cCceEEEEeCCeeeEcCCChHHHHHH
Q psy13476        124 TPLHQLVGVVTYYG-----KHYSTFFFHT-KLKVWIYFDDATVREVGPRWEQTIFF  173 (177)
Q Consensus       124 ~~~Y~L~smVcyyG-----~HY~af~~~~-~~~~W~~fDDs~V~~vg~~W~~Vv~~  173 (177)
                      ...|+|+|||||+|     +||+||+|+. ++++|+.|||++|++|.  +++|.+.
T Consensus       325 ~~~Y~L~aVv~H~G~~~~~GHY~ay~r~~~~~~~W~~~nD~~V~~v~--~~~V~~~  378 (397)
T d1vjva_         325 SCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVE--KEKIESL  378 (397)
T ss_dssp             SSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEEC--HHHHHGG
T ss_pred             CCCEEEEEEEEEecCCCCCcCeEEEEECCCCCCEEEEEECCCCEECC--HHHHHHh
Confidence            35699999999998     5999999975 36899999999999998  6888753