Psyllid ID: psy13486

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-
Protein Sequence
MDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDDLWVISDRMPIHLESELNFNDVNFRIFTVPLQEAVREQT
Secondary Structure (PSIPRED)
cccccEEEEEEcccccEEEEEcccccccccEEEEEEcccEEEccccEEEEccEEEEEEccccEEEcccccccccEEEEEEccHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEEccccEEEEcccccccHcccEEEEEcccEEEEccccEEccccEEEEEccccHHEEccccccccEEEEEEccHHHHHHccc
Coil and Loop (DISEMBL)
MDHNGILYFNLIDrnavgcwnsqypykpenighididnealifpsdvkvvgddlwvisdrmpihleselnfndvnfrIFTVPLQEAVREQT
Flexible Loop (DISEMBL)
MDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDDLWVISDRMPIHLeselnfndvnfRIFTVPLQEAVREQT
Low Complexity Region (SEG)
MDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDDLWVISDRMPIHLESELNFNDVNFRIFTVPLQEAVREQT
Disordered region (IsUnstruct)
****GILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDDLWVISDRMPIHLESELNFNDVNFRIFTVPL********
Disordered Region (DISOPRED)
*DHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDDLWVISDRMPIHLESELNFNDVNFRIFTVPLQEAVR***
Disordered Region (DISEMBL)
MDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDDLWVISDRMPIHLESELNFNDVNFRIFTVPLQEAVREQT
Disordered Region (DISPRO)
***NGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDDLWVISDRMPIHLESELNFNDVNFRIFTVPLQEAVRE**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDDLWVISDRMPIHLESELNFNDVNFRIFTVPLQEAVREQT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	91	2.2.26 [Sep-21-2011]
Q9GP71	568	Protein yellow OS=Drosoph	N/A	N/A	0.912	0.146	0.523	2e-21
O02437	568	Protein yellow OS=Drosoph	N/A	N/A	0.912	0.146	0.511	2e-21
Q9GP81	568	Protein yellow OS=Drosoph	N/A	N/A	0.912	0.146	0.523	4e-21
Q9BI18	560	Protein yellow OS=Drosoph	yes	N/A	0.956	0.155	0.5	2e-20
Q9BI17	541	Protein yellow OS=Drosoph	N/A	N/A	0.956	0.160	0.511	2e-20
Q9BI23	541	Protein yellow OS=Drosoph	N/A	N/A	0.956	0.160	0.511	2e-20
P09957	541	Protein yellow OS=Drosoph	yes	N/A	0.956	0.160	0.511	2e-20
P62407	541	Protein yellow OS=Drosoph	N/A	N/A	0.956	0.160	0.511	2e-20
P62408	541	Protein yellow OS=Drosoph	N/A	N/A	0.956	0.160	0.511	2e-20
O77061	452	Major royal jelly protein	no	N/A	0.967	0.194	0.284	7e-07

>sp|Q9GP71|YELL_DROMD Protein yellow OS=Drosophila madeirensis GN=y PE=3 SV=1

 Score =  101 bits (251), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/84 (52%), Positives = 64/84 (76%), Gaps = 1/84 (1%)

Query: 1   MDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKV-VGDDLWVISD 59
           M  +G+  FNLID+NAVGCW+S  PY P++ G +D D+  L+FP+DVK+    ++WV+SD
Sbjct: 320 MSDDGVELFNLIDQNAVGCWHSSMPYSPQSHGIVDRDDVGLVFPADVKIDENKNVWVLSD 379

Query: 60  RMPIHLESELNFNDVNFRIFTVPL 83
           RMP+ L S+L+++D NFRI+T PL
Sbjct: 380 RMPVFLLSDLDYSDTNFRIYTAPL 403

Controls the pigmentation pattern of the adult cuticle and larval mouth parts.
Drosophila madeirensis (taxid: 30013)

>sp|O02437|YELL_DROSU Protein yellow OS=Drosophila subobscura GN=y PE=3 SV=1

 Score =  100 bits (250), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 64/84 (76%), Gaps = 1/84 (1%)

Query: 1   MDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKV-VGDDLWVISD 59
           M  +G+  FNLID+NAVGCW+S  PY P++ G +D D+  L+FP+D+K+    ++WV+SD
Sbjct: 320 MSDDGVELFNLIDQNAVGCWHSSMPYSPQSHGIVDRDDVGLVFPADIKIDENKNVWVLSD 379

Query: 60  RMPIHLESELNFNDVNFRIFTVPL 83
           RMP+ L S+L+++D NFRI+T PL
Sbjct: 380 RMPVFLLSDLDYSDTNFRIYTAPL 403

Controls the pigmentation pattern of the adult cuticle and larval mouth parts.

Drosophila subobscura (taxid: 7241)

>sp|Q9GP81|YELL_DROGU Protein yellow OS=Drosophila guanche GN=y PE=3 SV=1

 Score =  100 bits (248), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 44/84 (52%), Positives = 63/84 (75%), Gaps = 1/84 (1%)

Query: 1   MDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKV-VGDDLWVISD 59
           M  +G+  FNLID+NAVGCW+S  PY P+  G +D D+  L+FP+DVK+    ++WV+SD
Sbjct: 320 MSDDGVELFNLIDQNAVGCWHSSMPYSPQFHGIVDRDDVGLVFPADVKIDENKNVWVLSD 379

Query: 60  RMPIHLESELNFNDVNFRIFTVPL 83
           RMP+ L S+L+++D NFRI+T PL
Sbjct: 380 RMPVFLLSDLDYSDTNFRIYTAPL 403

Controls the pigmentation pattern of the adult cuticle and larval mouth parts.

Drosophila guanche (taxid: 7266)

>sp|Q9BI18|YELL_DROPS Protein yellow OS=Drosophila pseudoobscura pseudoobscura GN=y PE=3 SV=2

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 65/88 (73%), Gaps = 1/88 (1%)

Query: 1   MDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKV-VGDDLWVISD 59
           M  +G+  FNLID+NAVGCW+S  PY P+  G +D D+  L+FP+DVK+    ++WV+SD
Sbjct: 322 MSDDGVELFNLIDQNAVGCWHSSMPYSPQFHGIVDRDDVGLVFPADVKIDENKNVWVLSD 381

Query: 60  RMPIHLESELNFNDVNFRIFTVPLQEAV 87
           RMP+ L S+L+++D+NFRI+T PL   +
Sbjct: 382 RMPVFLLSDLDYSDINFRIYTAPLATLI 409

Controls the pigmentation pattern of the adult cuticle and larval mouth parts.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q9BI17|YELL_DROYA Protein yellow OS=Drosophila yakuba GN=y PE=3 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/88 (51%), Positives = 64/88 (72%), Gaps = 1/88 (1%)

Query: 1   MDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKV-VGDDLWVISD 59
           M  +GI  FNLID+NAVGCW+S  PY P+  G +D D+  L+FP+DVK+    ++WV+SD
Sbjct: 313 MSDDGIELFNLIDQNAVGCWHSSMPYSPQFHGIVDRDDVGLVFPADVKIDENKNVWVLSD 372

Query: 60  RMPIHLESELNFNDVNFRIFTVPLQEAV 87
           RMP+ L S+L+++D NFRI+T PL   +
Sbjct: 373 RMPVFLLSDLDYSDTNFRIYTAPLATLI 400

Controls the pigmentation pattern of the adult cuticle and larval mouth parts.

Drosophila yakuba (taxid: 7245)

>sp|Q9BI23|YELL_DROER Protein yellow OS=Drosophila erecta GN=y PE=3 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/88 (51%), Positives = 64/88 (72%), Gaps = 1/88 (1%)

Query: 1   MDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKV-VGDDLWVISD 59
           M  +GI  FNLID+NAVGCW+S  PY P+  G +D D+  L+FP+DVK+    ++WV+SD
Sbjct: 313 MSDDGIELFNLIDQNAVGCWHSSMPYSPQFHGIVDRDDVGLVFPADVKIDENKNVWVLSD 372

Query: 60  RMPIHLESELNFNDVNFRIFTVPLQEAV 87
           RMP+ L S+L+++D NFRI+T PL   +
Sbjct: 373 RMPVFLLSDLDYSDTNFRIYTAPLATLI 400

Controls the pigmentation pattern of the adult cuticle and larval mouth parts.

Drosophila erecta (taxid: 7220)

>sp|P09957|YELL_DROME Protein yellow OS=Drosophila melanogaster GN=y PE=1 SV=1

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/88 (51%), Positives = 64/88 (72%), Gaps = 1/88 (1%)

Query: 1   MDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKV-VGDDLWVISD 59
           M  +GI  FNLID+NAVGCW+S  PY P+  G +D D+  L+FP+DVK+    ++WV+SD
Sbjct: 313 MSDDGIELFNLIDQNAVGCWHSSMPYSPQFHGIVDRDDVGLVFPADVKIDENKNVWVLSD 372

Query: 60  RMPIHLESELNFNDVNFRIFTVPLQEAV 87
           RMP+ L S+L+++D NFRI+T PL   +
Sbjct: 373 RMPVFLLSDLDYSDTNFRIYTAPLATLI 400

Controls the pigmentation pattern of the adult cuticle and larval mouth parts.

Drosophila melanogaster (taxid: 7227)

>sp|P62407|YELL_DROSI Protein yellow OS=Drosophila simulans GN=y PE=3 SV=1

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/88 (51%), Positives = 64/88 (72%), Gaps = 1/88 (1%)

Query: 1   MDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKV-VGDDLWVISD 59
           M  +GI  FNLID+NAVGCW+S  PY P+  G +D D+  L+FP+DVK+    ++WV+SD
Sbjct: 313 MSDDGIELFNLIDQNAVGCWHSSMPYSPQFHGIVDRDDVGLVFPADVKIDENKNVWVLSD 372

Query: 60  RMPIHLESELNFNDVNFRIFTVPLQEAV 87
           RMP+ L S+L+++D NFRI+T PL   +
Sbjct: 373 RMPVFLLSDLDYSDTNFRIYTAPLATLI 400

Controls the pigmentation pattern of the adult cuticle and larval mouth parts.

Drosophila simulans (taxid: 7240)

>sp|P62408|YELL_DROMA Protein yellow OS=Drosophila mauritiana GN=y PE=3 SV=1

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/88 (51%), Positives = 64/88 (72%), Gaps = 1/88 (1%)

Query: 1   MDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKV-VGDDLWVISD 59
           M  +GI  FNLID+NAVGCW+S  PY P+  G +D D+  L+FP+DVK+    ++WV+SD
Sbjct: 313 MSDDGIELFNLIDQNAVGCWHSSMPYSPQFHGIVDRDDVGLVFPADVKIDENKNVWVLSD 372

Query: 60  RMPIHLESELNFNDVNFRIFTVPLQEAV 87
           RMP+ L S+L+++D NFRI+T PL   +
Sbjct: 373 RMPVFLLSDLDYSDTNFRIYTAPLATLI 400

Controls the pigmentation pattern of the adult cuticle and larval mouth parts.

Drosophila mauritiana (taxid: 7226)

>sp|O77061|MRJP2_APIME Major royal jelly protein 2 OS=Apis mellifera GN=MRJP2 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 14/102 (13%)

Query: 1   MDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKV-------VGDD 53
           +  NG+L+  L+  +AVGCWN     + +N+  +  ++  L   + +K+       VG +
Sbjct: 309 VSKNGVLFVGLVGNSAVGCWNEHQSLQRQNLEMVAQNDRTLQMIAGMKIKEELPHFVGSN 368

Query: 54  -------LWVISDRMPIHLESELNFNDVNFRIFTVPLQEAVR 88
                  + V+S+RM   +  + NF+DVNFRI    ++E +R
Sbjct: 369 KPVKDEYMLVLSNRMQKIVNDDFNFDDVNFRILGANVKELIR 410

May play an important role in honeybee nutrition. It is found in the royal jelly which is the food of the queen honey bee larva. The royal jelly determines the development of the young larvae and is responsible for the high reproductive ability of the honeybee queen.

Apis mellifera (taxid: 7460)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	91
288869481	423	yellow-y precursor [Acyrthosiphon pisum]	0.956	0.205	0.693	1e-27
307178532	382	Protein yellow [Camponotus floridanus]	0.956	0.227	0.609	1e-24
294846073	526	yellow [Biston betularia]	0.901	0.155	0.574	7e-24
350413914	429	PREDICTED: protein yellow-like [Bombus i	0.956	0.202	0.597	8e-24
380017835	430	PREDICTED: protein yellow-like [Apis flo	0.956	0.202	0.597	1e-23
340712146	429	PREDICTED: protein yellow-like [Bombus t	0.956	0.202	0.597	1e-23
383850349	603	PREDICTED: protein yellow-like [Megachil	0.956	0.144	0.586	1e-23
290578556	430	yellow-like protein [Apis mellifera]	0.956	0.202	0.586	2e-23
323505959	487	yellow [Heliconius numata]	0.967	0.180	0.573	2e-23
332024125	370	Protein yellow [Acromyrmex echinatior]	0.956	0.235	0.586	4e-23

>gi|288869481|ref|NP_001165848.1| yellow-y precursor [Acyrthosiphon pisum]

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/88 (69%), Positives = 75/88 (85%), Gaps = 1/88 (1%)

Query: 1   MDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVG-DDLWVISD 59
           M  +GIL+FNLIDRNAVGCWNS+ PY+P+N+G ID+D+EALIFPSDVKV   +++WVISD
Sbjct: 311 MHDDGILFFNLIDRNAVGCWNSRLPYEPKNLGIIDVDDEALIFPSDVKVDSLNNVWVISD 370

Query: 60  RMPIHLESELNFNDVNFRIFTVPLQEAV 87
           RMP HL S+LNFND+NFRIF  PL  A+
Sbjct: 371 RMPNHLLSKLNFNDINFRIFFAPLDAAL 398

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307178532|gb|EFN67221.1| Protein yellow [Camponotus floridanus]

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/87 (60%), Positives = 66/87 (75%)

Query: 1   MDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDDLWVISDR 60
           MD NG+ +FNLID+NAVGCWNS  PY P N   I   +EA++FP+D+KV  D LW+ISDR
Sbjct: 279 MDENGLQFFNLIDQNAVGCWNSMLPYAPINQAVIARHDEAMVFPADIKVKRDLLWIISDR 338

Query: 61  MPIHLESELNFNDVNFRIFTVPLQEAV 87
           MPI L S LN+ D+NFRIFT P+Q A+
Sbjct: 339 MPIFLLSTLNYTDINFRIFTTPIQAAI 365

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|294846073|gb|ADF43215.1| yellow [Biston betularia]

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 50/87 (57%), Positives = 70/87 (80%), Gaps = 5/87 (5%)

Query: 1   MDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDD---LWVI 57
           MD +G+  F+LID+NA+GCWN+  P KP+N+G +D D+  L+FPSDVK+  DD   +WVI
Sbjct: 308 MDDSGVQLFSLIDQNAIGCWNAALPMKPQNVGLVDKDDVGLVFPSDVKI--DDQQNVWVI 365

Query: 58  SDRMPIHLESELNFNDVNFRIFTVPLQ 84
           SDRMP+ LE+EL+++D+NFRI+T PLQ
Sbjct: 366 SDRMPVFLEAELDYSDINFRIYTAPLQ 392

Source: Biston betularia

Species: Biston betularia

Genus: Biston

Family: Geometridae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350413914|ref|XP_003490152.1| PREDICTED: protein yellow-like [Bombus impatiens]

 Score =  114 bits (285), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 52/87 (59%), Positives = 67/87 (77%)

Query: 1   MDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDDLWVISDR 60
           MD NG+ +FNLID+NAVGCWNS  PY PEN   +   +EA+IFP+DVKV    LW+ISDR
Sbjct: 321 MDENGLQFFNLIDQNAVGCWNSALPYAPENHAVVARHDEAMIFPADVKVNRGLLWIISDR 380

Query: 61  MPIHLESELNFNDVNFRIFTVPLQEAV 87
           MP+ L S LN+ DVNFRI T+P+++A+
Sbjct: 381 MPVFLLSTLNYTDVNFRILTIPVRDAI 407

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380017835|ref|XP_003692850.1| PREDICTED: protein yellow-like [Apis florea]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/87 (59%), Positives = 67/87 (77%)

Query: 1   MDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDDLWVISDR 60
           MD NG+ +FNLID+NAVGCWNS  PY PEN   +   +EA+IFP+DVK+    LW+ISDR
Sbjct: 322 MDENGLQFFNLIDQNAVGCWNSLLPYSPENQAVVARHDEAMIFPADVKINRGLLWIISDR 381

Query: 61  MPIHLESELNFNDVNFRIFTVPLQEAV 87
           MPI L S LN+ DVNFRI T+P+++A+
Sbjct: 382 MPIFLLSTLNYTDVNFRILTMPVRDAI 408

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712146|ref|XP_003394625.1| PREDICTED: protein yellow-like [Bombus terrestris]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/87 (59%), Positives = 67/87 (77%)

Query: 1   MDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDDLWVISDR 60
           MD NG+ +FNLID+NAVGCWNS  PY PEN   +   +EA+IFP+DVKV    LW+ISDR
Sbjct: 321 MDENGLQFFNLIDQNAVGCWNSVLPYAPENHAVVARHDEAMIFPADVKVNRGLLWIISDR 380

Query: 61  MPIHLESELNFNDVNFRIFTVPLQEAV 87
           MP+ L S LN+ DVNFRI T+P+++A+
Sbjct: 381 MPVFLLSTLNYTDVNFRILTIPVRDAI 407

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383850349|ref|XP_003700758.1| PREDICTED: protein yellow-like [Megachile rotundata]

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/87 (58%), Positives = 66/87 (75%)

Query: 1   MDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDDLWVISDR 60
           MD  G+ +FNLID+NAVGCW+S  PY PEN   +   ++ALIFP+DVKV    LW+ISDR
Sbjct: 495 MDDTGLQFFNLIDQNAVGCWSSLLPYAPENQALVAKHDDALIFPADVKVNRGVLWIISDR 554

Query: 61  MPIHLESELNFNDVNFRIFTVPLQEAV 87
           MP+ L S LN+ DVNFRI TVP+++A+
Sbjct: 555 MPVFLLSTLNYTDVNFRILTVPVRDAI 581

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|290578556|gb|ADD51174.1| yellow-like protein [Apis mellifera]

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/87 (58%), Positives = 67/87 (77%)

Query: 1   MDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDDLWVISDR 60
           MD NG+ +FNLID+NAVGCWNS  PY PEN   +   +EA+IFP+DVK+    LW+ISDR
Sbjct: 322 MDENGLQFFNLIDQNAVGCWNSLLPYSPENQAVVARHDEAMIFPADVKINRGLLWIISDR 381

Query: 61  MPIHLESELNFNDVNFRIFTVPLQEAV 87
           MP+ L S LN+ DVNFRI T+P+++A+
Sbjct: 382 MPVFLLSTLNYTDVNFRILTMPVRDAI 408

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|323505959|gb|ADX87343.1| yellow [Heliconius numata]

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 69/89 (77%), Gaps = 1/89 (1%)

Query: 1   MDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKV-VGDDLWVISD 59
           MD  G+  F+LID+NA+GCW+S+ P KP+NI   D D+  LIFPSDVK+  G ++WVISD
Sbjct: 308 MDITGVQLFSLIDQNAIGCWSSRLPLKPQNIAIADKDDVGLIFPSDVKIDAGRNVWVISD 367

Query: 60  RMPIHLESELNFNDVNFRIFTVPLQEAVR 88
           RMP+ LESELN+ DVNFRIF  P+++ ++
Sbjct: 368 RMPVFLESELNYGDVNFRIFVAPMEKLIQ 396

Source: Heliconius numata

Species: Heliconius numata

Genus: Heliconius

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024125|gb|EGI64341.1| Protein yellow [Acromyrmex echinatior]

 Score =  112 bits (279), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 51/87 (58%), Positives = 65/87 (74%)

Query: 1   MDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDDLWVISDR 60
           MD NG+ +FNLID+NA+GCWNS  PY P N   +   +EALIFP+D+KV    LW++SDR
Sbjct: 266 MDENGLQFFNLIDQNAIGCWNSMLPYAPINQAIVARHDEALIFPADIKVKRGLLWIMSDR 325

Query: 61  MPIHLESELNFNDVNFRIFTVPLQEAV 87
           MPI L S LN+ DVNFRI T+P+Q A+
Sbjct: 326 MPIFLLSSLNYTDVNFRILTMPVQTAI 352

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	91
FB|FBgn0004034	541	y "yellow" [Drosophila melanog	0.989	0.166	0.510	1.1e-20
FB|FBgn0041713	438	yellow-c "yellow-c" [Drosophil	0.813	0.168	0.4	6.2e-14
FB|FBgn0038105	452	yellow-f2 "yellow-f2" [Drosoph	0.824	0.165	0.421	1.7e-12
FB|FBgn0039896	463	yellow-h "yellow-h" [Drosophil	0.934	0.183	0.366	2.3e-12
FB|FBgn0032601	453	yellow-b "yellow-b" [Drosophil	0.923	0.185	0.377	3.7e-12
FB|FBgn0041710	447	yellow-f "yellow-f" [Drosophil	0.824	0.167	0.342	4.1e-10
UNIPROTKB|Q8MZM5	462	dce "Dopachrome conversion enz	0.923	0.181	0.235	8.2e-08
FB|FBgn0034856	412	yellow-d2 "yellow-d2" [Drosoph	0.934	0.206	0.3	1.6e-05
UNIPROTKB|O18330	432	MRJP1 "Major royal jelly prote	0.923	0.194	0.275	3.7e-05
FB|FBgn0038151	426	yellow-e2 "yellow-e2" [Drosoph	0.967	0.206	0.223	0.00016

FB|FBgn0004034 y "yellow" [Drosophila melanogaster (taxid:7227)]

 Score = 251 (93.4 bits), Expect = 1.1e-20, P = 1.1e-20
 Identities = 47/92 (51%), Positives = 66/92 (71%)

Query:     1 MDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKV-VGDDLWVISD 59
             M  +GI  FNLID+NAVGCW+S  PY P+  G +D D+  L+FP+DVK+    ++WV+SD
Sbjct:   313 MSDDGIELFNLIDQNAVGCWHSSMPYSPQFHGIVDRDDVGLVFPADVKIDENKNVWVLSD 372

Query:    60 RMPIHLESELNFNDVNFRIFTVPLQEAVREQT 91
             RMP+ L S+L+++D NFRI+T PL   + E T
Sbjct:   373 RMPVFLLSDLDYSDTNFRIYTAPLATLI-ENT 403

GO:0005576 "extracellular region" evidence=IDA

GO:0048066 "developmental pigmentation" evidence=IEP;IMP;TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0042438 "melanin biosynthetic process" evidence=IMP

GO:0048067 "cuticle pigmentation" evidence=IGI;IMP

GO:0048065 "male courtship behavior, veined wing extension" evidence=IMP

GO:0006583 "melanin biosynthetic process from tyrosine" evidence=TAS

GO:0060179 "male mating behavior" evidence=IMP

GO:0070451 "cell hair" evidence=IDA

GO:0048082 "regulation of adult chitin-containing cuticle pigmentation" evidence=IGI

GO:0016853 "isomerase activity" evidence=IBA

FB|FBgn0041713 yellow-c "yellow-c" [Drosophila melanogaster (taxid:7227)]

 Score = 187 (70.9 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 30/75 (40%), Positives = 54/75 (72%)

Query:     5 GILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDD-LWVISDRMPI 63
             G++++  ++++A+ CWN + PY P+  G ID D+  L+FP+D+K+  +  +WV+SD+MP 
Sbjct:   348 GVIFYTQVNKDAIACWNIKRPYTPDTQGLIDSDSHTLVFPNDMKIDNEGTIWVLSDKMPT 407

Query:    64 HLESELNFNDVNFRI 78
             +L  EL+ + VN+RI
Sbjct:   408 YLYKELDPSAVNYRI 422

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016853 "isomerase activity" evidence=IBA

GO:0048067 "cuticle pigmentation" evidence=IBA

GO:0042438 "melanin biosynthetic process" evidence=IBA

GO:0005576 "extracellular region" evidence=IBA

FB|FBgn0038105 yellow-f2 "yellow-f2" [Drosophila melanogaster (taxid:7227)]

 Score = 174 (66.3 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 32/76 (42%), Positives = 50/76 (65%)

Query:     5 GILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDD-LWVISDRMPI 63
             G+++F+ I RN VGCW +  P   EN G +D + E +I+PSD+ +  D  +WV+S+ MPI
Sbjct:   363 GVIFFDEIQRNGVGCWKTSKPISAENYGSVDSNAEDMIYPSDLSIDEDGTIWVMSNSMPI 422

Query:    64 HLESELNFNDVNFRIF 79
              + S L+ +  NFRI+
Sbjct:   423 FIYSTLDTSIYNFRIW 438

GO:0005576 "extracellular region" evidence=IDA

GO:0004167 "dopachrome isomerase activity" evidence=IDA

GO:0048066 "developmental pigmentation" evidence=IC;TAS

GO:0006583 "melanin biosynthetic process from tyrosine" evidence=IC;TAS

GO:0042435 "indole-containing compound biosynthetic process" evidence=IDA

GO:0042438 "melanin biosynthetic process" evidence=IBA

GO:0048067 "cuticle pigmentation" evidence=IBA

FB|FBgn0039896 yellow-h "yellow-h" [Drosophila melanogaster (taxid:7227)]

 Score = 173 (66.0 bits), Expect = 2.3e-12, P = 2.3e-12
 Identities = 33/90 (36%), Positives = 60/90 (66%)

Query:     4 NGILYFNLIDRNAVGCWNSQYPYKPENIGHI-DIDNEALI-FPSDVKVVGD---DLWVIS 58
             NGI++F  + ++ +GCW++  PY   ++G   +++N  LI FP+D+KV  +   ++W+IS
Sbjct:   347 NGIMFFTQVHQDDIGCWDTSKPYTRAHLGKFHNMENSNLIQFPNDLKVDKEKDQNVWLIS 406

Query:    59 DRMPIHLESELNFNDVNFRIFTVPLQEAVR 88
             +R+PI L S L++ +VNFRI    + + +R
Sbjct:   407 NRLPIFLYSNLDYGEVNFRILKANVNKIIR 436

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0048067 "cuticle pigmentation" evidence=IBA

GO:0016853 "isomerase activity" evidence=IBA

GO:0042438 "melanin biosynthetic process" evidence=IBA

GO:0005576 "extracellular region" evidence=IBA

FB|FBgn0032601 yellow-b "yellow-b" [Drosophila melanogaster (taxid:7227)]

 Score = 171 (65.3 bits), Expect = 3.7e-12, P = 3.7e-12
 Identities = 34/90 (37%), Positives = 56/90 (62%)

Query:     5 GILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDD---LWVISDRM 61
             G+L++ L + N V CW +   +   +   I ++N+ L+FPSD+KV  DD   LWV+S+++
Sbjct:   314 GVLFYALPNLNEVACWRTATDFSHSSQSRIHMNNDTLVFPSDIKV--DDQKRLWVLSNQL 371

Query:    62 PIHLESELNFNDVNFRIFTVPLQEAVREQT 91
             P+ +  EL    +NFRI T  ++EA+ E T
Sbjct:   372 PVFIYDELYAGSINFRILTASVKEAI-ENT 400

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0048067 "cuticle pigmentation" evidence=IBA

GO:0016853 "isomerase activity" evidence=IBA

GO:0042438 "melanin biosynthetic process" evidence=IBA

GO:0005576 "extracellular region" evidence=IBA

FB|FBgn0041710 yellow-f "yellow-f" [Drosophila melanogaster (taxid:7227)]

 Score = 152 (58.6 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 26/76 (34%), Positives = 49/76 (64%)

Query:     5 GILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDD-LWVISDRMPI 63
             G+++F  + ++ VGCW +  P+  EN G +  ++  +I+PSD+ +  +  +WV+S+ MPI
Sbjct:   358 GVIFFAEVQKSGVGCWKTSKPFSTENHGSVYSNSSEMIYPSDLTIDEEGYIWVMSNSMPI 417

Query:    64 HLESELNFNDVNFRIF 79
              + S+L+    NFRI+
Sbjct:   418 FVYSKLDVEKYNFRIW 433

GO:0006583 "melanin biosynthetic process from tyrosine" evidence=IC;TAS

GO:0004167 "dopachrome isomerase activity" evidence=IDA

GO:0042435 "indole-containing compound biosynthetic process" evidence=IDA

GO:0005576 "extracellular region" evidence=IDA

GO:0048066 "developmental pigmentation" evidence=IC;TAS

GO:0048067 "cuticle pigmentation" evidence=IBA

GO:0042438 "melanin biosynthetic process" evidence=IBA

UNIPROTKB|Q8MZM5 dce "Dopachrome conversion enzyme" [Anopheles gambiae (taxid:7165)]

 Score = 131 (51.2 bits), Expect = 8.2e-08, P = 8.2e-08
 Identities = 20/85 (23%), Positives = 55/85 (64%)

Query:     5 GILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDD-LWVISDRMPI 63
             G+++F LI +NA+ CW+S  P+ P+N+  +  ++  +++P+D+ +  +  +W +++ +  
Sbjct:   319 GVIFFALIQQNAILCWDSNKPFAPQNMAIVYKNDRDIVYPNDLSIDQNGYVWFMTNSIIK 378

Query:    64 HLESELNFNDVNFRIFTVPLQEAVR 88
              L ++LN ++ NF ++   +++ ++
Sbjct:   379 LLYTQLNLDEFNFFVWRANIKQIIK 403

GO:0004167 "dopachrome isomerase activity" evidence=IBA

GO:0005576 "extracellular region" evidence=IBA

GO:0042438 "melanin biosynthetic process" evidence=IBA

GO:0048067 "cuticle pigmentation" evidence=IBA

FB|FBgn0034856 yellow-d2 "yellow-d2" [Drosophila melanogaster (taxid:7227)]

 Score = 109 (43.4 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 27/90 (30%), Positives = 49/90 (54%)

Query:     1 MDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV----G-DDLW 55
             M  +G L   L+   ++  WN +  Y  +N+  +  D + L F S +K+V    G ++LW
Sbjct:   315 MSESGFLICGLVQPASLLAWNIRTGYSHQNLVMLVEDEQRLQFASGLKIVRNHEGKEELW 374

Query:    56 VISDRMPIHLESELNFNDVNFRIFTVPLQE 85
             V+S+R+     + L++ ++NFRI    +QE
Sbjct:   375 VLSNRLQKAFGAGLDYKEINFRIQKCGVQE 404

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0048067 "cuticle pigmentation" evidence=IBA

GO:0042438 "melanin biosynthetic process" evidence=IBA

GO:0005576 "extracellular region" evidence=IBA

GO:0016853 "isomerase activity" evidence=IBA

UNIPROTKB|O18330 MRJP1 "Major royal jelly protein 1" [Apis mellifera (taxid:7460)]

 Score = 106 (42.4 bits), Expect = 3.7e-05, P = 3.7e-05
 Identities = 27/98 (27%), Positives = 50/98 (51%)

Query:     4 NGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKV--------VGDD-- 53
             +G+L+F L+  +A+GCWN     +  NI  +   +E L   + +K+        + D   
Sbjct:   314 SGVLFFGLVGDSALGCWNEHRTLERHNIRTVAQSDETLQMIASMKIKEALPHVPIFDRYI 373

Query:    54 ----LWVISDRMPIHLESELNFNDVNFRIFTVPLQEAV 87
                 + V+S++M   + ++ NF+DVNFRI    + E +
Sbjct:   374 NREYILVLSNKMQKMVNNDFNFDDVNFRIMNANVNELI 411

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=IDA

GO:0048650 "caste determination, influence by environmental factors" evidence=IDA

GO:0050829 "defense response to Gram-negative bacterium" evidence=IDA

GO:0050830 "defense response to Gram-positive bacterium" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IDA

FB|FBgn0038151 yellow-e2 "yellow-e2" [Drosophila melanogaster (taxid:7227)]

 Score = 100 (40.3 bits), Expect = 0.00016, P = 0.00016
 Identities = 21/94 (22%), Positives = 49/94 (52%)

Query:     1 MDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV-----G-DDL 54
             +   G L+   ++   +  W+ + PY  EN+  + I+   L F S +K+V     G ++L
Sbjct:   328 ISRQGFLFCGFLEPIGIFGWDIRRPYNRENVKLLAINPATLQFVSGMKIVRRPADGREEL 387

Query:    55 WVISDRMPIHLESELNFNDVNFRIFTVPLQEAVR 88
             W++SDR+       +++ ++N+R+    + + ++
Sbjct:   388 WLLSDRLQKIFAGTIDYREINYRVMRCDVDDLLQ 421

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0042438 "melanin biosynthetic process" evidence=IBA

GO:0005576 "extracellular region" evidence=IBA

GO:0016853 "isomerase activity" evidence=IBA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P09957	YELL_DROME	No assigned EC number	0.5113	0.9560	0.1608	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	91
pfam03022	285	pfam03022, MRJP, Major royal jelly protein	4e-27

>gnl|CDD|217322 pfam03022, MRJP, Major royal jelly protein

 Score = 99.3 bits (248), Expect = 4e-27
 Identities = 37/89 (41%), Positives = 62/89 (69%), Gaps = 1/89 (1%)

Query: 1   MDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDD-LWVISD 59
           +D NG+L+F L+ +NAVGCWN+  PY   N+G +  +++ L FPSD+K+  ++ LWV+S+
Sbjct: 193 VDPNGVLFFGLVGQNAVGCWNTSTPYSRANLGVVARNSDTLQFPSDLKIDKEEYLWVLSN 252

Query: 60  RMPIHLESELNFNDVNFRIFTVPLQEAVR 88
           RM   L ++L++++VNFRI    +   +R
Sbjct: 253 RMQKFLYNDLDYDEVNFRILGANVDLLIR 281

Royal jelly is the food of queen bee larvae, and is responsible for the high reproductive ability of the queen. Major royal jelly proteins make up around 90% of larval jelly proteins. This family also the sequence-related yellow protein of drosophila which controls pigmentation of the adult cuticle and larval mouth parts. Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	91
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	99.97
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	94.6
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	94.11
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	92.23
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	92.07
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	90.19
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	89.1

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=99.97  E-value=2.2e-31  Score=199.45  Aligned_cols=91  Identities=36%  Similarity=0.739  Sum_probs=75.9

Q ss_pred             CCccCeEEEEeCCCCcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEeC---CEEEEEEeCCcceecCCCCCCcceEE
Q psy13486          1 MDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVG---DDLWVISDRMPIHLESELNFNDVNFR   77 (91)
Q Consensus         1 ~d~~gvlff~lv~~~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid~---~~lWvlsnrl~~f~~~~l~~~e~NfR   77 (91)
                      ||++|+|||++++++||+|||+++||+++|+.+|++|+++|+||++|+|++   |+||++|||||+|++++++++|+|||
T Consensus       193 ~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snrl~~~~~~~~~~~e~nfr  272 (287)
T PF03022_consen  193 IDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNRLQRFAYGNLNPDEVNFR  272 (287)
T ss_dssp             EETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S--SSTGGG---SS-SEE
T ss_pred             ECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECcchHhhccCCCCCccEEe
Confidence            579999999999999999999999999999999999999999999999995   89999999999999999999999999


Q ss_pred             EEecCHHHHHhcCC
Q psy13486         78 IFTVPLQEAVREQT   91 (91)
Q Consensus        78 I~~~~~~~~i~gt~   91 (91)
                      |+++++++||+||+
T Consensus       273 i~~~~v~~~~~~t~  286 (287)
T PF03022_consen  273 IWRARVDELIKGTV  286 (287)
T ss_dssp             EEES-HHHHHTTST
T ss_pred             EEEeCHHHHhcCCC
Confidence            99999999999996

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=94.60  E-value=0.077  Score=37.79  Aligned_cols=56  Identities=14%  Similarity=0.043  Sum_probs=41.6

Q ss_pred             cCeEEEEeCCCCcEEEeeCCCCC-CCCceeeEeecCCeeeeccceEEe-CCEEEEEEe
Q psy13486          4 NGILYFNLIDRNAVGCWNSQYPY-KPENIGHIDIDNEALIFPSDVKVV-GDDLWVISD   59 (91)
Q Consensus         4 ~gvlff~lv~~~aI~cWn~~~~~-~~~n~~iia~d~~~l~f~sdlkid-~~~lWvlsn   59 (91)
                      ...||++......|..++...+- ...+.++++.-+...-+|+||.+| +|+|||-..
T Consensus       145 g~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~  202 (246)
T PF08450_consen  145 GKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW  202 (246)
T ss_dssp             SSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE
T ss_pred             chheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc
Confidence            34799999999999999997543 245666776555554589999999 999999743

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=94.11  E-value=0.17  Score=32.42  Aligned_cols=49  Identities=14%  Similarity=0.287  Sum_probs=30.4

Q ss_pred             ccCeEEEEeCCC-----------------CcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe-CCEEEEEE
Q psy13486          3 HNGILYFNLIDR-----------------NAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV-GDDLWVIS   58 (91)
Q Consensus         3 ~~gvlff~lv~~-----------------~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid-~~~lWvls   58 (91)
                      ++|.+||+..+.                 ..+.+||+.+.    -..+++.   .|.||+|+.+. ++...+++
T Consensus         8 ~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~----~~~vl~~---~L~fpNGVals~d~~~vlv~   74 (89)
T PF03088_consen    8 DTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTK----ETTVLLD---GLYFPNGVALSPDESFVLVA   74 (89)
T ss_dssp             TT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTT----EEEEEEE---EESSEEEEEE-TTSSEEEEE
T ss_pred             CCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCC----eEEEehh---CCCccCeEEEcCCCCEEEEE
Confidence            349999998753                 34777777765    3445554   38899999998 66544433

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=92.23  E-value=0.12  Score=25.98  Aligned_cols=21  Identities=19%  Similarity=0.398  Sum_probs=16.7

Q ss_pred             eeeccceEEe-CCEEEEEEeCC
Q psy13486         41 LIFPSDVKVV-GDDLWVISDRM   61 (91)
Q Consensus        41 l~f~sdlkid-~~~lWvlsnrl   61 (91)
                      |.+|.|+.++ +|++||.-..-
T Consensus         1 f~~P~gvav~~~g~i~VaD~~n   22 (28)
T PF01436_consen    1 FNYPHGVAVDSDGNIYVADSGN   22 (28)
T ss_dssp             BSSEEEEEEETTSEEEEEECCC
T ss_pred             CcCCcEEEEeCCCCEEEEECCC
Confidence            4589999999 99999965433

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=92.07  E-value=0.66  Score=25.24  Aligned_cols=40  Identities=20%  Similarity=0.267  Sum_probs=33.5

Q ss_pred             CeEEEEeCCCC-cEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe
Q psy13486          5 GILYFNLIDRN-AVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV   50 (91)
Q Consensus         5 gvlff~lv~~~-aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid   50 (91)
                      |-||++..... .|.+=+....    +.++|.+++  ++-|.||.||
T Consensus         1 ~~iYWtD~~~~~~I~~a~~dGs----~~~~vi~~~--l~~P~giaVD   41 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANLDGS----NRRTVISDD--LQHPEGIAVD   41 (42)
T ss_dssp             TEEEEEETTTTEEEEEEETTST----SEEEEEESS--TSSEEEEEEE
T ss_pred             CEEEEEECCCCcEEEEEECCCC----CeEEEEECC--CCCcCEEEEC
Confidence            56899999999 8888887765    677888776  8899999986

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=90.19  E-value=2  Score=32.83  Aligned_cols=80  Identities=15%  Similarity=0.108  Sum_probs=48.4

Q ss_pred             CccC-eEEEEeCCCCcEEEeeCC-CCCCCCceeeEeecCCeeeeccceEEe-CCEEEEEEeCCcceecCCCCCCcceEEE
Q psy13486          2 DHNG-ILYFNLIDRNAVGCWNSQ-YPYKPENIGHIDIDNEALIFPSDVKVV-GDDLWVISDRMPIHLESELNFNDVNFRI   78 (91)
Q Consensus         2 d~~g-vlff~lv~~~aI~cWn~~-~~~~~~n~~iia~d~~~l~f~sdlkid-~~~lWvlsnrl~~f~~~~l~~~e~NfRI   78 (91)
                      +.+| .||++.-..+.|..+... ..-...+.+..+.-.+.-..|+|+.+| +|++|+ +---.-.--..++++..-.+.
T Consensus       171 SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~-~a~~~g~~v~~~~pdG~l~~~  249 (307)
T COG3386         171 SPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWV-AAVWGGGRVVRFNPDGKLLGE  249 (307)
T ss_pred             CCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEE-ecccCCceEEEECCCCcEEEE
Confidence            4345 999999999999888776 333334444333333345689999999 999997 222221222334454444444


Q ss_pred             EecC
Q psy13486         79 FTVP   82 (91)
Q Consensus        79 ~~~~   82 (91)
                      ++.+
T Consensus       250 i~lP  253 (307)
T COG3386         250 IKLP  253 (307)
T ss_pred             EECC
Confidence            4443

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=89.10  E-value=1.4  Score=31.24  Aligned_cols=49  Identities=20%  Similarity=0.266  Sum_probs=34.2

Q ss_pred             CccCeEEEEeCCC--------CcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe-CC-EEEEEE
Q psy13486          2 DHNGILYFNLIDR--------NAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV-GD-DLWVIS   58 (91)
Q Consensus         2 d~~gvlff~lv~~--------~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid-~~-~lWvls   58 (91)
                      |++|.|||+....        .+|.+++....     ...++.   .+.+|+||.++ +| .|||-.
T Consensus        94 d~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~-----~~~~~~---~~~~pNGi~~s~dg~~lyv~d  152 (246)
T PF08450_consen   94 DPDGNLYVTDSGGGGASGIDPGSVYRIDPDGK-----VTVVAD---GLGFPNGIAFSPDGKTLYVAD  152 (246)
T ss_dssp             -TTS-EEEEEECCBCTTCGGSEEEEEEETTSE-----EEEEEE---EESSEEEEEEETTSSEEEEEE
T ss_pred             cCCCCEEEEecCCCccccccccceEEECCCCe-----EEEEec---CcccccceEECCcchheeecc
Confidence            6789999998866        46899988722     334443   48899999999 65 577643

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	91
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	3e-19
2qe8_A	343	Uncharacterized protein; structural genomics, join	2e-09

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* Length = 381

 Score = 79.4 bits (195), Expect = 3e-19
 Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 3/91 (3%)

Query: 1   MDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDD-LWVISD 59
                +++F   +   V CWN+Q          +   +   +F +D+ V     LW +S+
Sbjct: 283 DPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342

Query: 60  RMPIHLESE-LNFNDVNFRIFTV-PLQEAVR 88
             P   +SE   ++   +R+  +   QEA+ 
Sbjct: 343 GFPPIRKSEKFKYDFPRYRLMRIMDTQEAIA 373

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} Length = 343

 Score = 51.7 bits (123), Expect = 2e-09
 Identities = 14/89 (15%), Positives = 33/89 (37%), Gaps = 8/89 (8%)

Query: 1   MDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGD-DLWVISD 59
           +D +  +Y   +  +A+G   S      +    + + +E L +        D  L+   +
Sbjct: 255 IDKDHNIYVGDLAHSAIGVITS-----ADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCN 309

Query: 60  RMP--IHLESELNFNDVNFRIFTVPLQEA 86
           ++     L +  N +   + IF +    A
Sbjct: 310 QLHHSAPLNAGENISAPPYYIFRLKPLAA 338

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	91
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	99.96
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.15
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	93.68
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	93.11
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	93.02
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	92.99
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	92.94
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	92.49
2p4o_A	306	Hypothetical protein; putative lactonase, structur	92.21
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	92.11
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	92.02
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	91.6
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	91.53
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	91.47
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	91.23
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	91.06
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	90.35
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	90.16
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	89.77
3v65_B	386	Low-density lipoprotein receptor-related protein;	89.69
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	89.64
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	89.43
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	89.14
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	89.0
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	88.89
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	88.58
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	88.55
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	88.5
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	88.08
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	87.95
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	87.9
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	87.64
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	87.6
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	87.3
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	87.16
3v65_B	386	Low-density lipoprotein receptor-related protein;	87.09
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	86.84
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	86.63
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	86.61
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	86.4
2p4o_A	306	Hypothetical protein; putative lactonase, structur	85.92
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	85.41
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	85.34
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	85.2
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	85.08
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	84.74
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	84.26
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	83.35
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	82.98
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	80.7
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	80.68

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=99.96  E-value=5.9e-30  Score=197.45  Aligned_cols=90  Identities=24%  Similarity=0.543  Sum_probs=87.5

Q ss_pred             CC-ccCeEEEEeCCCCcEEEeeCCC-CCCCCceeeEeecCCeeeeccceEEe-CCEEEEEEeCCcceecCCC-CCCcceE
Q psy13486          1 MD-HNGILYFNLIDRNAVGCWNSQY-PYKPENIGHIDIDNEALIFPSDVKVV-GDDLWVISDRMPIHLESEL-NFNDVNF   76 (91)
Q Consensus         1 ~d-~~gvlff~lv~~~aI~cWn~~~-~~~~~n~~iia~d~~~l~f~sdlkid-~~~lWvlsnrl~~f~~~~l-~~~e~Nf   76 (91)
                      || ++|+|||++++++||+|||+++ ||+++|+++|++|+ +|+||+||+++ +|+|||+|||||+|+++++ |.+|+||
T Consensus       282 ~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~-~l~~pd~~~i~~~g~Lwv~sn~l~~~~~g~l~d~~~~nf  360 (381)
T 3q6k_A          282 YDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSS-RFVFGTDISVDSKGGLWFMSNGFPPIRKSEKFKYDFPRY  360 (381)
T ss_dssp             ECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECT-TCCSEEEEEECTTSCEEEEECSCCSSTTGGGCCCSSCSE
T ss_pred             EeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECC-CccccCeEEECCCCeEEEEECcchHhhcCCcCCCCcCCE
Confidence            45 8999999999999999999999 99999999999999 99999999999 8999999999999999999 9999999


Q ss_pred             EEEec-CHHHHHhcCC
Q psy13486         77 RIFTV-PLQEAVREQT   91 (91)
Q Consensus        77 RI~~~-~~~~~i~gt~   91 (91)
                      ||+|+ +++++|+||+
T Consensus       361 rI~r~~~~~~~i~~t~  376 (381)
T 3q6k_A          361 RLMRIMDTQEAIAGTA  376 (381)
T ss_dssp             EEEEESCHHHHHTTST
T ss_pred             EEEEecCHHHHhcCCC
Confidence            99999 9999999995

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.15  E-value=6.1e-11  Score=86.28  Aligned_cols=78  Identities=14%  Similarity=0.190  Sum_probs=65.5

Q ss_pred             CCccCeEEEEeCCCCcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe-CCEEEEEEeCC---cceecCCCCCCcceE
Q psy13486          1 MDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV-GDDLWVISDRM---PIHLESELNFNDVNF   76 (91)
Q Consensus         1 ~d~~gvlff~lv~~~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid-~~~lWvlsnrl---~~f~~~~l~~~e~Nf   76 (91)
                      +|.+|.||++....++|.||++.+.    ++..++.++ .+++|+++.++ +|.|||.+++.   |.|.++ ++..+.||
T Consensus       255 ~d~~G~l~va~~~~~~V~~~d~~~G----~~~~~~~~~-~~~~p~~va~~~~g~l~v~~~~~~~~~~f~~~-~~~~~~~~  328 (343)
T 2qe8_A          255 IDKDHNIYVGDLAHSAIGVITSADR----AYKLLVTDE-KLSWTDSFNFGSDGYLYFDCNQLHHSAPLNAG-ENISAPPY  328 (343)
T ss_dssp             ECTTCCEEEEEGGGTEEEEEETTTT----EEEEEEECG-GGSCEEEEEECTTSCEEEEECCGGGSGGGBTT-CCCCCSCE
T ss_pred             ECCCCCEEEEccCCCeEEEEECCCC----CEEEEEECC-ceecCCeeEECCCCcEEEEeCccccccccccC-CCcCcCCe
Confidence            3778999999999999999998322    466777766 68999999999 88999999955   556665 89999999


Q ss_pred             EEEecCHH
Q psy13486         77 RIFTVPLQ   84 (91)
Q Consensus        77 RI~~~~~~   84 (91)
                      ||+++++.
T Consensus       329 ~i~~~~~~  336 (343)
T 2qe8_A          329 YIFRLKPL  336 (343)
T ss_dssp             EEEEECCS
T ss_pred             EEEEEECC
Confidence            99999874

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=93.68  E-value=0.16  Score=33.86  Aligned_cols=53  Identities=19%  Similarity=0.150  Sum_probs=39.0

Q ss_pred             CccCeEEEEeCCCCcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe-CCEEEEEEeC
Q psy13486          2 DHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV-GDDLWVISDR   60 (91)
Q Consensus         2 d~~gvlff~lv~~~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid-~~~lWvlsnr   60 (91)
                      |.+|.||.+....+.|.+|+..+....      ......+..|.++.++ +|+|||-...
T Consensus       200 d~~g~l~v~~~~~~~v~~~~~~~~~~~------~~~~~~~~~p~~i~~~~~g~l~v~~~~  253 (270)
T 1rwi_B          200 DEAGTVYVTEHNTNQVVKLLAGSTTST------VLPFTGLNTPLAVAVDSDRTVYVADRG  253 (270)
T ss_dssp             CTTCCEEEEETTTSCEEEECTTCSCCE------ECCCCSCSCEEEEEECTTCCEEEEEGG
T ss_pred             CCCCCEEEEECCCCcEEEEcCCCCcce------eeccCCCCCceeEEECCCCCEEEEECC
Confidence            678899999999899999998764311      1112235689999999 8899987543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=93.11  E-value=0.13  Score=34.46  Aligned_cols=51  Identities=18%  Similarity=0.302  Sum_probs=37.3

Q ss_pred             CccCeEEEEeCCCCcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe-CCEEEEEE
Q psy13486          2 DHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV-GDDLWVIS   58 (91)
Q Consensus         2 d~~gvlff~lv~~~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid-~~~lWvls   58 (91)
                      |++|.||++......|.+++....+     .... -+.....|.+|.+| +|+||+-+
T Consensus       196 d~~g~l~v~~~~~~~i~~~~~~g~~-----~~~~-~~~~~~~~~~i~~d~~g~l~v~~  247 (300)
T 2qc5_A          196 GNDGALWFVEIMGNKIGRITTTGEI-----SEYD-IPTPNARPHAITAGKNSEIWFTE  247 (300)
T ss_dssp             CTTSSEEEEETTTTEEEEECTTCCE-----EEEE-CSSTTCCEEEEEECSTTCEEEEE
T ss_pred             CCCCCEEEEccCCCEEEEEcCCCcE-----EEEE-CCCCCCCceEEEECCCCCEEEec
Confidence            5678999999888899999984321     1111 12345678999999 88999987

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=93.02  E-value=0.19  Score=35.86  Aligned_cols=53  Identities=21%  Similarity=0.245  Sum_probs=43.3

Q ss_pred             C-ccCeEEEEeCCCCcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEeCCEEEEEE
Q psy13486          2 D-HNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDDLWVIS   58 (91)
Q Consensus         2 d-~~gvlff~lv~~~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid~~~lWvls   58 (91)
                      | ..|.||++......|...+...    .+..+++.....+..|.||.++++.||+.-
T Consensus       172 d~~~~~lY~~D~~~~~I~~~d~dg----~~~~~~~~~~~~~~~P~giav~~~~ly~~d  225 (316)
T 1ijq_A          172 DLLSGRLYWVDSKLHSISSIDVNG----GNRKTILEDEKRLAHPFSLAVFEDKVFWTD  225 (316)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTS----CSCEEEEECTTTTSSEEEEEEETTEEEEEE
T ss_pred             eccCCEEEEEECCCCeEEEEecCC----CceEEEeecCCccCCcEEEEEECCEEEEEE
Confidence            5 5789999999999999999875    356777776667889999999977888754

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=92.99  E-value=0.16  Score=33.82  Aligned_cols=51  Identities=18%  Similarity=0.247  Sum_probs=37.9

Q ss_pred             CccCeEEEEeCCCCcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe-CCEEEEEE
Q psy13486          2 DHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV-GDDLWVIS   58 (91)
Q Consensus         2 d~~gvlff~lv~~~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid-~~~lWvls   58 (91)
                      |.+|.||.+.-....|..|+..+..      ........+..|.+|.++ +|.||+-+
T Consensus       158 ~~~g~l~v~~~~~~~i~~~~~~~~~------~~~~~~~~~~~p~~i~~d~~g~l~v~~  209 (270)
T 1rwi_B          158 DNSGNVYVTDTDNNRVVKLEAESNN------QVVLPFTDITAPWGIAVDEAGTVYVTE  209 (270)
T ss_dssp             CTTCCEEEEEGGGTEEEEECTTTCC------EEECCCSSCCSEEEEEECTTCCEEEEE
T ss_pred             eCCCCEEEEECCCCEEEEEecCCCc------eEeecccCCCCceEEEECCCCCEEEEE
Confidence            5678899998888899999987642      111222344789999999 78999987

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=92.94  E-value=0.12  Score=35.92  Aligned_cols=59  Identities=14%  Similarity=0.147  Sum_probs=39.3

Q ss_pred             CccC-eEEEEeCCCCcEEEeeCC-CCCCCCceeeEeecCCeeeeccceEEe-CCEEEEEEeC
Q psy13486          2 DHNG-ILYFNLIDRNAVGCWNSQ-YPYKPENIGHIDIDNEALIFPSDVKVV-GDDLWVISDR   60 (91)
Q Consensus         2 d~~g-vlff~lv~~~aI~cWn~~-~~~~~~n~~iia~d~~~l~f~sdlkid-~~~lWvlsnr   60 (91)
                      +.+| .||++.-....|..|+.. ..=...+.++++.-+.....|.+|.+| +|+|||-...
T Consensus       157 spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~  218 (297)
T 3g4e_A          157 SLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN  218 (297)
T ss_dssp             CTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET
T ss_pred             cCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC
Confidence            3344 688888888899999863 111122344555444334689999999 8999998643

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=92.49  E-value=0.36  Score=34.17  Aligned_cols=57  Identities=9%  Similarity=-0.092  Sum_probs=37.4

Q ss_pred             CccC-eEEEEeCCCCcEEEeeCC--CCCCCCceeeEeecCCeeeeccceEEe-CCEEEEEE
Q psy13486          2 DHNG-ILYFNLIDRNAVGCWNSQ--YPYKPENIGHIDIDNEALIFPSDVKVV-GDDLWVIS   58 (91)
Q Consensus         2 d~~g-vlff~lv~~~aI~cWn~~--~~~~~~n~~iia~d~~~l~f~sdlkid-~~~lWvls   58 (91)
                      +.+| .||++.-....|.+|+..  +.....+..++..-+.....|+++.+| +|+||+-+
T Consensus       187 s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~  247 (326)
T 2ghs_A          187 SPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNAR  247 (326)
T ss_dssp             CTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEE
T ss_pred             cCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEE
Confidence            3345 688888778899999975  221222233443322233578999999 89999987

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=92.21  E-value=0.39  Score=33.63  Aligned_cols=51  Identities=12%  Similarity=0.020  Sum_probs=37.5

Q ss_pred             cCeEEEEeCCCCcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe-CCEEEEEE
Q psy13486          4 NGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV-GDDLWVIS   58 (91)
Q Consensus         4 ~gvlff~lv~~~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid-~~~lWvls   58 (91)
                      .+.||++....+.|..++....=...+..++++    +..|.||.+| +|+|||-.
T Consensus       178 g~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~----~~~P~gi~vd~dG~l~va~  229 (306)
T 2p4o_A          178 GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE----QTNIDDFAFDVEGNLYGAT  229 (306)
T ss_dssp             TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE----SCCCSSEEEBTTCCEEEEC
T ss_pred             CCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec----cCCCCCeEECCCCCEEEEe
Confidence            358999999999999999874211223344443    2589999999 89999875

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=92.11  E-value=0.24  Score=33.55  Aligned_cols=53  Identities=11%  Similarity=0.258  Sum_probs=39.2

Q ss_pred             CccCeEEEEeCCCCcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe-CCEEEEEEe
Q psy13486          2 DHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV-GDDLWVISD   59 (91)
Q Consensus         2 d~~gvlff~lv~~~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid-~~~lWvlsn   59 (91)
                      |.+|.+|.+......|..|+....+    +..+... ..+..|.+|.+| +|+|||-..
T Consensus       172 ~~~g~l~v~~~~~~~i~~~~~~g~~----~~~~~~~-g~~~~p~~i~~d~~G~l~v~~~  225 (286)
T 1q7f_A          172 NDKQEIFISDNRAHCVKVFNYEGQY----LRQIGGE-GITNYPIGVGINSNGEILIADN  225 (286)
T ss_dssp             CSSSEEEEEEGGGTEEEEEETTCCE----EEEESCT-TTSCSEEEEEECTTCCEEEEEC
T ss_pred             CCCCCEEEEECCCCEEEEEcCCCCE----EEEEccC-CccCCCcEEEECCCCCEEEEeC
Confidence            5678899998888999999976542    2233222 235789999999 889999873

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=92.02  E-value=0.37  Score=32.60  Aligned_cols=52  Identities=15%  Similarity=0.213  Sum_probs=37.5

Q ss_pred             CccCeEEEEeCCCCcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe-CCEEEEEE
Q psy13486          2 DHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV-GDDLWVIS   58 (91)
Q Consensus         2 d~~gvlff~lv~~~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid-~~~lWvls   58 (91)
                      |.+|.+|.+......|.+|+.....    ...+. ....+..|.+|.++ +|++||-.
T Consensus       129 ~~~g~l~v~~~~~~~i~~~~~~g~~----~~~~~-~~~~~~~p~~i~~~~~g~l~v~~  181 (286)
T 1q7f_A          129 DNKGRIIVVECKVMRVIIFDQNGNV----LHKFG-CSKHLEFPNGVVVNDKQEIFISD  181 (286)
T ss_dssp             CTTSCEEEEETTTTEEEEECTTSCE----EEEEE-CTTTCSSEEEEEECSSSEEEEEE
T ss_pred             eCCCCEEEEECCCCEEEEEcCCCCE----EEEeC-CCCccCCcEEEEECCCCCEEEEE
Confidence            5678899998888999999975431    22222 22345679999999 88999864

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=91.60  E-value=0.3  Score=32.61  Aligned_cols=53  Identities=13%  Similarity=0.194  Sum_probs=38.5

Q ss_pred             CccCeEEEEeCCCCcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe-CCEEEEEEeC
Q psy13486          2 DHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV-GDDLWVISDR   60 (91)
Q Consensus         2 d~~gvlff~lv~~~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid-~~~lWvlsnr   60 (91)
                      |.+|.||++......|.+++....+.     .+ .-+..+.+|.++.++ +|+||+-+..
T Consensus       154 d~~g~l~v~~~~~~~i~~~~~~g~~~-----~~-~~~~~~~~~~~i~~d~~g~l~v~~~~  207 (300)
T 2qc5_A          154 GSDNALWFTENQNNSIGRITNTGKLE-----EY-PLPTNAAAPVGITSGNDGALWFVEIM  207 (300)
T ss_dssp             CTTSSEEEEETTTTEEEEECTTCCEE-----EE-ECSSTTCCEEEEEECTTSSEEEEETT
T ss_pred             CCCCCEEEEecCCCeEEEECCCCcEE-----Ee-eCCCCCCCcceEEECCCCCEEEEccC
Confidence            56788999998888999999843321     12 123345689999999 8899998743

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=91.53  E-value=0.44  Score=35.38  Aligned_cols=52  Identities=12%  Similarity=0.200  Sum_probs=38.7

Q ss_pred             CccCeEEEEeC-CCCcEEEeeCCCCCCCCceeeEeec------------CCeeeeccceEEe-CCEEEEE
Q psy13486          2 DHNGILYFNLI-DRNAVGCWNSQYPYKPENIGHIDID------------NEALIFPSDVKVV-GDDLWVI   57 (91)
Q Consensus         2 d~~gvlff~lv-~~~aI~cWn~~~~~~~~n~~iia~d------------~~~l~f~sdlkid-~~~lWvl   57 (91)
                      |.+|.||++.. ....|.+|+....    .+..++-.            ...+..|.||.++ +|.|||-
T Consensus       331 d~dG~lyvad~~~~~~I~~~~~~~G----~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVa  396 (409)
T 3hrp_A          331 DEDGNFYIVDGFKGYCLRKLDILDG----YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIA  396 (409)
T ss_dssp             CTTCCEEEEETTTTCEEEEEETTTT----EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEE
T ss_pred             eCCCCEEEEeCCCCCEEEEEECCCC----EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEE
Confidence            67789999999 8999999995432    23344433            1247789999999 8999984

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=91.47  E-value=0.45  Score=32.49  Aligned_cols=52  Identities=17%  Similarity=0.159  Sum_probs=36.6

Q ss_pred             CccCeEEEEeCCCCcEEEeeCCCCCCCCceeeEee--cCCeeeeccceEEe-CCEEEEE
Q psy13486          2 DHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDI--DNEALIFPSDVKVV-GDDLWVI   57 (91)
Q Consensus         2 d~~gvlff~lv~~~aI~cWn~~~~~~~~n~~iia~--d~~~l~f~sdlkid-~~~lWvl   57 (91)
                      |.+|-|+.+.-....|..|+..+.    ....+..  ....+..|.++.++ +|.+|+-
T Consensus        77 ~~dg~l~v~~~~~~~i~~~d~~~g----~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vt  131 (296)
T 3e5z_A           77 NKQGHLIACSHGLRRLERQREPGG----EWESIADSFEGKKLNSPNDVCLAPDGSLWFS  131 (296)
T ss_dssp             CTTCCEEEEETTTTEEEEECSTTC----CEEEEECEETTEECCCCCCEEECTTSCEEEE
T ss_pred             CCCCcEEEEecCCCeEEEEcCCCC----cEEEEeeccCCCCCCCCCCEEECCCCCEEEE
Confidence            567888888887889999998543    1222322  22344578999999 8899985

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=91.23  E-value=0.23  Score=33.73  Aligned_cols=57  Identities=14%  Similarity=-0.006  Sum_probs=36.8

Q ss_pred             CccC-eEEEEeCCCCcEEEeeCCCCCCCCceeeEeecCCee-eeccceEEe-CCEEEEEE
Q psy13486          2 DHNG-ILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEAL-IFPSDVKVV-GDDLWVIS   58 (91)
Q Consensus         2 d~~g-vlff~lv~~~aI~cWn~~~~~~~~n~~iia~d~~~l-~f~sdlkid-~~~lWvls   58 (91)
                      |.+| .||.+......|.+|+....-...+..+++.-+... ..|.++.+| +|+||+-+
T Consensus       184 d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~  243 (314)
T 1pjx_A          184 DGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVAN  243 (314)
T ss_dssp             TSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEE
T ss_pred             CCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEE
Confidence            3566 788888888899999865211111222333323222 578999999 88999985

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=91.06  E-value=0.35  Score=36.53  Aligned_cols=54  Identities=11%  Similarity=0.177  Sum_probs=39.6

Q ss_pred             ccCeEEEEeCCCCcEEEeeCCCCCCCCceeeEeec-----CCeeeeccceEE---e-CCEEEEEEeC
Q psy13486          3 HNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDID-----NEALIFPSDVKV---V-GDDLWVISDR   60 (91)
Q Consensus         3 ~~gvlff~lv~~~aI~cWn~~~~~~~~n~~iia~d-----~~~l~f~sdlki---d-~~~lWvlsnr   60 (91)
                      ++|.+|++.+-...|..|+....-    ...+.-.     -+..+.|+||.+   | ++.|||.++.
T Consensus        23 ~~g~~~vs~l~~g~V~~~~~~~~~----~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~   85 (334)
T 2p9w_A           23 TRQVFYQSNLYKGRIEVYNPKTQS----HFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKN   85 (334)
T ss_dssp             TTTEEEEEETTTTEEEEECTTTCC----EEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEE
T ss_pred             CCCEEEEEeccCCEEEEEcCCCCe----EEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcc
Confidence            689999999999999999986431    1112111     234578899999   7 8899998774

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=90.35  E-value=0.58  Score=33.97  Aligned_cols=52  Identities=15%  Similarity=0.123  Sum_probs=40.1

Q ss_pred             C-ccCeEEEEeCCCCcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEeCCEEEEEEe
Q psy13486          2 D-HNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDDLWVISD   59 (91)
Q Consensus         2 d-~~gvlff~lv~~~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid~~~lWvlsn   59 (91)
                      | .+|.||++......|.+.+....    +...+....  +..|.||.++++.||+-.-
T Consensus       211 d~~~~~lY~aD~~~~~I~~~~~dG~----~~~~~~~~~--~~~P~giav~~~~ly~td~  263 (349)
T 3v64_C          211 DYAGRRMYWVDAKHHVIERANLDGS----HRKAVISQG--LPHPFAITVFEDSLYWTDW  263 (349)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSC----SCEEEECSS--CSSEEEEEEETTEEEEEET
T ss_pred             eCCCCEEEEEECCCCEEEEEeCCCC----ceEEEEeCC--CCCceEEEEECCEEEEecC
Confidence            5 68899999999999999997653    444555433  7799999999778877543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=90.16  E-value=0.79  Score=32.03  Aligned_cols=54  Identities=13%  Similarity=0.153  Sum_probs=39.1

Q ss_pred             CccC-eEEEEeCCCCcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe-CCEEEEEEeC
Q psy13486          2 DHNG-ILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV-GDDLWVISDR   60 (91)
Q Consensus         2 d~~g-vlff~lv~~~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid-~~~lWvlsnr   60 (91)
                      |.+| .||++......|..++...+.. .+..+++.-+ .   |.+|.+| +|+|||-...
T Consensus       193 ~~dg~~lyv~d~~~~~I~~~~~~~~~~-~~~~~~~~~~-g---P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          193 SADSSFVLVAEFLSHQIVKYWLEGPKK-GTAEVLVKIP-N---PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             CTTSSEEEEEEGGGTEEEEEESSSTTT-TCEEEEEECS-S---EEEEEECTTSCEEEEEEE
T ss_pred             CCCCCEEEEEeCCCCeEEEEECCCCcC-CccceEEeCC-C---CCCeEECCCCCEEEEecC
Confidence            4455 6999988889999999876532 2345555322 2   9999999 8999998755

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=89.77  E-value=0.59  Score=34.68  Aligned_cols=50  Identities=8%  Similarity=0.099  Sum_probs=37.8

Q ss_pred             cCeEEEEeCCCCcEEEeeCCCCCCCCceeeEeecC------------CeeeeccceEEe-CCEEEEEE
Q psy13486          4 NGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDN------------EALIFPSDVKVV-GDDLWVIS   58 (91)
Q Consensus         4 ~gvlff~lv~~~aI~cWn~~~~~~~~n~~iia~d~------------~~l~f~sdlkid-~~~lWvls   58 (91)
                      .|.||++....+.|..|+....     ...++-..            ..+.+|.+|.++ +|+|||--
T Consensus       278 ~g~lyv~d~~~~~I~~~~~~g~-----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad  340 (409)
T 3hrp_A          278 DSNFYMSDQNLSSVYKITPDGE-----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVD  340 (409)
T ss_dssp             TTEEEEEETTTTEEEEECTTCC-----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEE
T ss_pred             CCEEEEEeCCCCEEEEEecCCC-----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEe
Confidence            6899999999999999987643     33333322            247789999999 88888753

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=89.69  E-value=0.87  Score=33.47  Aligned_cols=56  Identities=11%  Similarity=0.241  Sum_probs=41.1

Q ss_pred             C-ccCeEEEEeCCC-CcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe--CCEEEEEEeCCcc
Q psy13486          2 D-HNGILYFNLIDR-NAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV--GDDLWVISDRMPI   63 (91)
Q Consensus         2 d-~~gvlff~lv~~-~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid--~~~lWvlsnrl~~   63 (91)
                      | ..|.||++.... ..|...+....    ...++..  ..+.+|+||.+|  ++.||+.-...++
T Consensus       210 dp~~g~ly~td~~~~~~I~r~~~dG~----~~~~~~~--~~~~~PnGlavd~~~~~lY~aD~~~~~  269 (386)
T 3v65_B          210 HPMEGTIYWTDWGNTPRIEASSMDGS----GRRIIAD--THLFWPNGLTIDYAGRRMYWVDAKHHV  269 (386)
T ss_dssp             ETTTTEEEEEECSSSCEEEEEETTSC----SCEEEEC--SSCSCEEEEEEEGGGTEEEEEETTTTE
T ss_pred             EcCCCeEEEeccCCCCEEEEEeCCCC----CcEEEEE--CCCCCeeeEEEeCCCCEEEEEECCCCE
Confidence            5 578999999888 88999988754    3334443  347799999999  6788886544443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=89.64  E-value=0.62  Score=33.79  Aligned_cols=56  Identities=11%  Similarity=0.241  Sum_probs=40.9

Q ss_pred             C-ccCeEEEEeCCC-CcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe--CCEEEEEEeCCcc
Q psy13486          2 D-HNGILYFNLIDR-NAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV--GDDLWVISDRMPI   63 (91)
Q Consensus         2 d-~~gvlff~lv~~-~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid--~~~lWvlsnrl~~   63 (91)
                      | ..|.||++.... ..|...+....    +..++..  +.+.+|+||.+|  ++.||+.-...++
T Consensus       167 dp~~g~ly~td~~~~~~I~r~~~dG~----~~~~~~~--~~~~~PnGla~d~~~~~lY~aD~~~~~  226 (349)
T 3v64_C          167 HPMEGTIYWTDWGNTPRIEASSMDGS----GRRIIAD--THLFWPNGLTIDYAGRRMYWVDAKHHV  226 (349)
T ss_dssp             ETTTTEEEEEECSSSCEEEEEETTSC----SCEESCC--SSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             ecCcCeEEEeccCCCCEEEEEeCCCC----CcEEEEE--CCCCCcceEEEeCCCCEEEEEECCCCE
Confidence            5 589999999988 89999988754    2333333  357899999999  6788886544443

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=89.43  E-value=0.68  Score=30.85  Aligned_cols=52  Identities=17%  Similarity=0.331  Sum_probs=36.9

Q ss_pred             CccCeEEEEeCCCCcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe-CCEEEEEEe
Q psy13486          2 DHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV-GDDLWVISD   59 (91)
Q Consensus         2 d~~gvlff~lv~~~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid-~~~lWvlsn   59 (91)
                      |.+|.||++......|.+|+.....     ..+. .+.....|.++.++ +|.+|+.+.
T Consensus       107 ~~~g~l~v~~~~~~~i~~~d~~g~~-----~~~~-~~~~~~~~~~i~~~~~g~l~v~~~  159 (299)
T 2z2n_A          107 GPNGDIWFTEMNGNRIGRITDDGKI-----REYE-LPNKGSYPSFITLGSDNALWFTEN  159 (299)
T ss_dssp             CTTSCEEEEETTTTEEEEECTTCCE-----EEEE-CSSTTCCEEEEEECTTSCEEEEET
T ss_pred             CCCCCEEEEecCCceEEEECCCCCE-----EEec-CCCCCCCCceEEEcCCCCEEEEeC
Confidence            5678999998888899999984332     1111 12234578999999 889999764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=89.14  E-value=0.57  Score=31.21  Aligned_cols=51  Identities=22%  Similarity=0.277  Sum_probs=36.8

Q ss_pred             CccCeEEEEeCCCCcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe-CCEEEEEE
Q psy13486          2 DHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV-GDDLWVIS   58 (91)
Q Consensus         2 d~~gvlff~lv~~~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid-~~~lWvls   58 (91)
                      |++|.||++....+.|.+|+....     ...+ ..+.....|.++.++ +|.||+-+
T Consensus       191 ~~~g~l~v~~~~~~~i~~~~~~g~-----~~~~-~~~~~~~~~~~i~~~~~g~l~v~~  242 (299)
T 2z2n_A          191 GNDDALWFVEIIGNKIGRITTSGE-----ITEF-KIPTPNARPHAITAGAGIDLWFTE  242 (299)
T ss_dssp             CTTSSEEEEETTTTEEEEECTTCC-----EEEE-ECSSTTCCEEEEEECSTTCEEEEE
T ss_pred             CCCCCEEEEccCCceEEEECCCCc-----EEEE-ECCCCCCCceeEEECCCCCEEEec
Confidence            567889999988899999998322     1122 222344678999999 88999985

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=89.00  E-value=1.1  Score=31.76  Aligned_cols=56  Identities=11%  Similarity=0.236  Sum_probs=40.1

Q ss_pred             C-ccCeEEEEeCCC-CcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe--CCEEEEEEeCCcc
Q psy13486          2 D-HNGILYFNLIDR-NAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV--GDDLWVISDRMPI   63 (91)
Q Consensus         2 d-~~gvlff~lv~~-~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid--~~~lWvlsnrl~~   63 (91)
                      | ..|.||++.... ..|...+....    ...++...  .+.+|+||.+|  ++.||+.-...++
T Consensus       128 dp~~g~ly~~d~~~~~~I~~~~~dG~----~~~~~~~~--~~~~P~gla~d~~~~~lY~~D~~~~~  187 (316)
T 1ijq_A          128 DPVHGFMYWTDWGTPAKIKKGGLNGV----DIYSLVTE--NIQWPNGITLDLLSGRLYWVDSKLHS  187 (316)
T ss_dssp             ETTTTEEEEEECSSSCEEEEEETTSC----CEEEEECS--SCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CCCCCEEEEEccCCCCeEEEEcCCCC----CeEEEEEC--CCCCceEEEEeccCCEEEEEECCCCe
Confidence            5 588999999875 78988887653    33444432  57899999999  6788876544433

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=88.89  E-value=0.73  Score=31.17  Aligned_cols=52  Identities=12%  Similarity=0.113  Sum_probs=36.9

Q ss_pred             CccCeEEEEeCCCCcEEEeeCCC-CCCCCceeeEeecCCeeeeccceEEe-CCE-EEEEEeC
Q psy13486          2 DHNGILYFNLIDRNAVGCWNSQY-PYKPENIGHIDIDNEALIFPSDVKVV-GDD-LWVISDR   60 (91)
Q Consensus         2 d~~gvlff~lv~~~aI~cWn~~~-~~~~~n~~iia~d~~~l~f~sdlkid-~~~-lWvlsnr   60 (91)
                      |++|.||.+....+.|.+|+..+ ..    ...+. .+  ..+|.++.++ +|. ||+-+..
T Consensus       234 d~~G~l~v~~~~~~~i~~~d~~~g~~----~~~~~-~~--~~~~~~i~~~~dg~~l~v~~~~  288 (314)
T 1pjx_A          234 DEDNNLLVANWGSSHIEVFGPDGGQP----KMRIR-CP--FEKPSNLHFKPQTKTIFVTEHE  288 (314)
T ss_dssp             BTTCCEEEEEETTTEEEEECTTCBSC----SEEEE-CS--SSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCCCEEEEEcCCCEEEEEcCCCCcE----eEEEe-CC--CCCceeEEECCCCCEEEEEeCC
Confidence            67899999988888999999873 32    12221 12  2578899998 665 9987754

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=88.58  E-value=1.1  Score=35.59  Aligned_cols=56  Identities=9%  Similarity=0.062  Sum_probs=40.1

Q ss_pred             ccCeEEEEeCCC-CcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe--CCEEEEEEeCCcce
Q psy13486          3 HNGILYFNLIDR-NAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV--GDDLWVISDRMPIH   64 (91)
Q Consensus         3 ~~gvlff~lv~~-~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid--~~~lWvlsnrl~~f   64 (91)
                      .+|.||++.... ..|...+....    +..++.  .+.+.+|+||.+|  ++.||+.-.+..+.
T Consensus       445 ~~G~ly~tD~g~~~~I~r~~~dG~----~~~~l~--~~~l~~P~GlalD~~~~~LY~aD~~~~~I  503 (619)
T 3s94_A          445 MVGYMYWTDWGEIPKIERAALDGS----DRVVLV--NTSLGWPNGLALDYDEGKIYWGDAKTDKI  503 (619)
T ss_dssp             TTTEEEEEECSSSCEEEEEETTSC----SCEEEE--CSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCcEEEecCCCCCEEEEEccCCC----ccEEEE--eCCCCCCeeeEEcccCCEEEEEECCCCEE
Confidence            579999999875 67888877643    334444  3368999999999  67888865444443

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=88.55  E-value=1.4  Score=30.19  Aligned_cols=54  Identities=7%  Similarity=0.017  Sum_probs=36.0

Q ss_pred             CccCeEEEEeCCC----CcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe-CCEEEEEEe
Q psy13486          2 DHNGILYFNLIDR----NAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV-GDDLWVISD   59 (91)
Q Consensus         2 d~~gvlff~lv~~----~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid-~~~lWvlsn   59 (91)
                      |.+|.||.+....    ..|.+|+..+....   .++.. ...-..|.++.++ +|.+|+-+.
T Consensus        95 ~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~---~~~~~-~~~~~~~~~i~~d~~g~l~v~~~  153 (333)
T 2dg1_A           95 HKDGRLFVCYLGDFKSTGGIFAATENGDNLQ---DIIED-LSTAYCIDDMVFDSKGGFYFTDF  153 (333)
T ss_dssp             CTTSCEEEEECTTSSSCCEEEEECTTSCSCE---EEECS-SSSCCCEEEEEECTTSCEEEEEC
T ss_pred             CCCCcEEEEeCCCCCCCceEEEEeCCCCEEE---EEEcc-CccCCcccceEECCCCCEEEEec
Confidence            5678888887765    68999998764211   12221 1123478889998 888998765

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=88.50  E-value=0.74  Score=36.63  Aligned_cols=57  Identities=11%  Similarity=0.082  Sum_probs=41.6

Q ss_pred             ccCeEEEEeCCCC--cEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe--CCEEEEEEeCCccee
Q psy13486          3 HNGILYFNLIDRN--AVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV--GDDLWVISDRMPIHL   65 (91)
Q Consensus         3 ~~gvlff~lv~~~--aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid--~~~lWvlsnrl~~f~   65 (91)
                      .+|.||++.....  .|..-+....    +..++..+  .+.+|+||.+|  ++.||+.-.+..+..
T Consensus       442 ~~g~ly~tD~g~~~~~I~r~~~dG~----~~~~l~~~--~l~~P~gla~D~~~~~LYw~D~~~~~I~  502 (628)
T 4a0p_A          442 EKGYMYFTNLQERSPKIERAALDGT----EREVLFFS--GLSKPIALALDSRLGKLFWADSDLRRIE  502 (628)
T ss_dssp             TTTEEEEEEEETTEEEEEEEETTSC----SCEEEECS--SCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCCeEEEeecCCCCCeEEEEeCCCC----CcEEEEec--cCCCccEEEEeCCCCEEEEEeCCCCEEE
Confidence            5899999998877  5888877644    45556543  48899999999  578887655555443

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=88.08  E-value=1.9  Score=29.53  Aligned_cols=52  Identities=17%  Similarity=0.148  Sum_probs=35.1

Q ss_pred             CccCeEEEEeCCCCcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe-CCEEEEEEe
Q psy13486          2 DHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV-GDDLWVISD   59 (91)
Q Consensus         2 d~~gvlff~lv~~~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid-~~~lWvlsn   59 (91)
                      |++|.||++-.....|.+|+..+.-    ...+....  -..|.++.++ +|.||+.+.
T Consensus        53 ~~~g~l~~~~~~~~~i~~~d~~~~~----~~~~~~~~--~~~~~~i~~~~dg~l~v~~~  105 (333)
T 2dg1_A           53 DRQGQLFLLDVFEGNIFKINPETKE----IKRPFVSH--KANPAAIKIHKDGRLFVCYL  105 (333)
T ss_dssp             CTTSCEEEEETTTCEEEEECTTTCC----EEEEEECS--SSSEEEEEECTTSCEEEEEC
T ss_pred             CCCCCEEEEECCCCEEEEEeCCCCc----EEEEeeCC--CCCcceEEECCCCcEEEEeC
Confidence            5678899887778899999987541    11222111  1357888888 788888764

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=87.95  E-value=2.4  Score=31.36  Aligned_cols=61  Identities=5%  Similarity=0.064  Sum_probs=39.2

Q ss_pred             ccCeEEEEeCCCCcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe--CCEEEEEEeCCccee
Q psy13486          3 HNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV--GDDLWVISDRMPIHL   65 (91)
Q Consensus         3 ~~gvlff~lv~~~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid--~~~lWvlsnrl~~f~   65 (91)
                      ++|.||++.+....|..++............+..  ..+..|.||.+|  +++||+.-.......
T Consensus       122 ~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~--~~~~~p~glavD~~~~~lY~~d~~~~~I~  184 (400)
T 3p5b_L          122 ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--RDIQAPDGLAVDWIHSNIYWTDSVLGTVS  184 (400)
T ss_dssp             TTTEEEEEETTTTEEEEEEC------CCCEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             ccCceEEEecCCCeEEEEEcccCCCCCcceEEEe--CCCCCcccEEEEecCCceEEEECCCCeEE
Confidence            5799999999999999999865321112223332  245689999999  778887654444433

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=87.90  E-value=1  Score=33.43  Aligned_cols=53  Identities=21%  Similarity=0.240  Sum_probs=42.8

Q ss_pred             C-ccCeEEEEeCCCCcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEeCCEEEEEE
Q psy13486          2 D-HNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDDLWVIS   58 (91)
Q Consensus         2 d-~~gvlff~lv~~~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid~~~lWvls   58 (91)
                      | .+|.||++......|..-+....    +..+++..+..+..|.+|.++++.||+.-
T Consensus       254 d~~~~~lY~aD~~~~~I~~~d~dG~----~~~~~~~~~~~l~~P~gl~v~~~~lywtd  307 (400)
T 3p5b_L          254 DLLSGRLYWVDSKLHSISSIDVNGG----NRKTILEDEKRLAHPFSLAVFEDKVFWTD  307 (400)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSC----CCEEEEECSSTTSSEEEEEEETTEEEEEE
T ss_pred             EeCCCEEEEEECCCCEEEEEeCCCC----ccEEEEeCCCCCCCCEEEEEeCCEEEEec
Confidence            5 67899999999999999997653    66778777777889999999966766643

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=87.64  E-value=1.2  Score=32.07  Aligned_cols=50  Identities=20%  Similarity=0.135  Sum_probs=38.5

Q ss_pred             C-ccCeEEEEeCCCCcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEeCCEEEEE
Q psy13486          2 D-HNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDDLWVI   57 (91)
Q Consensus         2 d-~~gvlff~lv~~~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid~~~lWvl   57 (91)
                      | .+|.||++......|.+.+....    +..+++.  ..+..|.|+.++++.+|+.
T Consensus       174 d~~~~~lY~aD~~~~~I~~~d~dG~----~~~~~~~--~~~~~P~glav~~~~lywt  224 (318)
T 3sov_A          174 DYEEQKLYWADAKLNFIHKSNLDGT----NRQAVVK--GSLPHPFALTLFEDILYWT  224 (318)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSC----SCEEEEC--SCCSCEEEEEEETTEEEEE
T ss_pred             eccCCEEEEEECCCCEEEEEcCCCC----ceEEEec--CCCCCceEEEEeCCEEEEE
Confidence            5 57899999999999999998653    4556664  3578999999995565543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=87.60  E-value=1.9  Score=34.24  Aligned_cols=56  Identities=7%  Similarity=0.045  Sum_probs=41.4

Q ss_pred             C-ccCeEEEEeCC-CCcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe--CCEEEEEEeCCcce
Q psy13486          2 D-HNGILYFNLID-RNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV--GDDLWVISDRMPIH   64 (91)
Q Consensus         2 d-~~gvlff~lv~-~~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid--~~~lWvlsnrl~~f   64 (91)
                      | ..|.||++... ...|...+....    +..+++.   .+.+|+||.+|  ++.||+.--+....
T Consensus       131 dp~~G~lY~tD~g~~~~I~r~~~dG~----~~~~l~~---~~~~P~GlalD~~~~~LY~aD~~~~~I  190 (628)
T 4a0p_A          131 DPAEGFMYWTEWGGKPKIDRAAMDGS----ERTTLVP---NVGRANGLTIDYAKRRLYWTDLDTNLI  190 (628)
T ss_dssp             ETTTTEEEEEECSSSCEEEEEETTSC----SCEEEEC---SCSSEEEEEEETTTTEEEEEETTTTEE
T ss_pred             ccCCCeEEEeCCCCCCEEEEEeCCCC----ceEEEEC---CCCCcceEEEccccCEEEEEECCCCEE
Confidence            5 58999999976 678998888754    3555653   58899999999  57887765444433

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=87.30  E-value=1.2  Score=30.33  Aligned_cols=54  Identities=15%  Similarity=0.047  Sum_probs=34.8

Q ss_pred             CccCeEEEEeCCCCcEEEeeCCCCCCC-CceeeEeecCCeeeeccceEEe-CCEEEEEE
Q psy13486          2 DHNGILYFNLIDRNAVGCWNSQYPYKP-ENIGHIDIDNEALIFPSDVKVV-GDDLWVIS   58 (91)
Q Consensus         2 d~~gvlff~lv~~~aI~cWn~~~~~~~-~n~~iia~d~~~l~f~sdlkid-~~~lWvls   58 (91)
                      +.+|-++++.-....|.+|+....=.. .+..++  .. ....|.+|.+| +|+|||-+
T Consensus       180 s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~-~~~~p~~i~~d~~G~l~v~~  235 (296)
T 3e5z_A          180 LPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF--TV-EPGKTDGLRVDAGGLIWASA  235 (296)
T ss_dssp             CTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE--CC-SSSCCCSEEEBTTSCEEEEE
T ss_pred             CCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe--eC-CCCCCCeEEECCCCCEEEEc
Confidence            344544477777788999998622111 122333  22 34579999999 99999987

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=87.16  E-value=0.57  Score=35.12  Aligned_cols=53  Identities=13%  Similarity=0.282  Sum_probs=38.1

Q ss_pred             CccC-eEEEEeCCCCcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe-C-CEEEEEE
Q psy13486          2 DHNG-ILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV-G-DDLWVIS   58 (91)
Q Consensus         2 d~~g-vlff~lv~~~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid-~-~~lWvls   58 (91)
                      +.+| .||++.-....|..++...+=+..+.+++..    -.+|+||++| + |+||+=.
T Consensus       229 spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~----~g~PDGi~vD~e~G~lwva~  284 (355)
T 3sre_A          229 SPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF----DTLVDNISVDPVTGDLWVGC  284 (355)
T ss_dssp             CTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC----SSEEEEEEECTTTCCEEEEE
T ss_pred             CCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeC----CCCCceEEEeCCCCcEEEEe
Confidence            4344 8999999999999998764323344455522    2589999999 6 9999944

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=87.09  E-value=4.6  Score=29.53  Aligned_cols=55  Identities=11%  Similarity=0.119  Sum_probs=39.5

Q ss_pred             ccCeEEEEeCCCCcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe--CCEEEEEEeCCcc
Q psy13486          3 HNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV--GDDLWVISDRMPI   63 (91)
Q Consensus         3 ~~gvlff~lv~~~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid--~~~lWvlsnrl~~   63 (91)
                      ++|.||++......|..++.....    ...+..  ..+..|.||.+|  ++.||+.-..-.+
T Consensus       126 ~~~~ly~~D~~~~~I~r~~~~g~~----~~~~~~--~~~~~p~glavd~~~g~lY~~d~~~~~  182 (386)
T 3v65_B          126 RRELVFWSDVTLDRILRANLNGSN----VEEVVS--TGLESPGGLAVDWVHDKLYWTDSGTSR  182 (386)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCC----EEEEEC--SSCSCCCCEEEETTTTEEEEEETTTTE
T ss_pred             CCCeEEEEeCCCCcEEEEecCCCC----cEEEEe--CCCCCccEEEEEeCCCeEEEEcCCCCe
Confidence            688999999999999999987642    223332  235679999999  6788775443333

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=86.84  E-value=1.8  Score=30.27  Aligned_cols=53  Identities=11%  Similarity=0.206  Sum_probs=38.6

Q ss_pred             Cc-cCeEEEEeC-CCCcEEEeeCCCCCCCCceeeEeec-------CCeeeeccceEEe-C-CEEEEEE
Q psy13486          2 DH-NGILYFNLI-DRNAVGCWNSQYPYKPENIGHIDID-------NEALIFPSDVKVV-G-DDLWVIS   58 (91)
Q Consensus         2 d~-~gvlff~lv-~~~aI~cWn~~~~~~~~n~~iia~d-------~~~l~f~sdlkid-~-~~lWvls   58 (91)
                      |. +|.||.+.- ....|..|+....+    ...+...       +..+.+|.+|.++ + |.|||-.
T Consensus       151 ~~~~g~lyv~d~~~~~~I~~~~~~g~~----~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d  214 (329)
T 3fvz_A          151 EPSTGAVFVSDGYCNSRIVQFSPSGKF----VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVAD  214 (329)
T ss_dssp             CTTTCCEEEEECSSCCEEEEECTTSCE----EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEE
T ss_pred             eCCCCeEEEEeCCCCCeEEEEcCCCCE----EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEE
Confidence            54 899999995 78999999965442    2233221       3477889999999 5 8999864

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=86.63  E-value=1.5  Score=30.28  Aligned_cols=51  Identities=18%  Similarity=0.161  Sum_probs=34.8

Q ss_pred             CccCeEEEEeCCCCcEEEeeCCCCCCCCceeeEeec--CCeeeeccceEEe-CCEEEEE
Q psy13486          2 DHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDID--NEALIFPSDVKVV-GDDLWVI   57 (91)
Q Consensus         2 d~~gvlff~lv~~~aI~cWn~~~~~~~~n~~iia~d--~~~l~f~sdlkid-~~~lWvl   57 (91)
                      |++|.|+.+.-....|..|+....     ...++..  ...+..|+++.++ +|.+|+-
T Consensus        94 d~dG~l~v~~~~~~~v~~~~~~g~-----~~~~~~~~~~~~~~~~~~i~~d~dG~l~~t  147 (305)
T 3dr2_A           94 DAQQRLVHCEHGRRAITRSDADGQ-----AHLLVGRYAGKRLNSPNDLIVARDGAIWFT  147 (305)
T ss_dssp             CTTSCEEEEETTTTEEEEECTTSC-----EEEEECEETTEECSCCCCEEECTTSCEEEE
T ss_pred             CCCCCEEEEECCCCEEEEECCCCC-----EEEEEeccCCCccCCCCCEEECCCCCEEEe
Confidence            567888888777778888886532     2333322  2234568999999 8999983

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=86.61  E-value=2.3  Score=29.34  Aligned_cols=53  Identities=9%  Similarity=-0.077  Sum_probs=32.8

Q ss_pred             CccCeEEEEeCCCCcEEEeeCCCCCCCCceeeEeecC--CeeeeccceEEe-CCEEEEEEeC
Q psy13486          2 DHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDN--EALIFPSDVKVV-GDDLWVISDR   60 (91)
Q Consensus         2 d~~gvlff~lv~~~aI~cWn~~~~~~~~n~~iia~d~--~~l~f~sdlkid-~~~lWvlsnr   60 (91)
                      |++|-|+.+.  ..+|..|+..+.    ....++...  .....|+++++| +|.+|+-+..
T Consensus        62 ~~dG~l~v~~--~~~l~~~d~~~g----~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~  117 (297)
T 3g4e_A           62 RQSGGYVATI--GTKFCALNWKEQ----SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMA  117 (297)
T ss_dssp             BTTSSEEEEE--TTEEEEEETTTT----EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEE
T ss_pred             CCCCCEEEEE--CCeEEEEECCCC----cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCC
Confidence            3456666665  467777776543    233333322  234578999999 8899996643

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=86.40  E-value=1.9  Score=31.06  Aligned_cols=56  Identities=11%  Similarity=0.159  Sum_probs=39.5

Q ss_pred             C-ccCeEEEEeCC-CCcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe--CCEEEEEEeCCcc
Q psy13486          2 D-HNGILYFNLID-RNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV--GDDLWVISDRMPI   63 (91)
Q Consensus         2 d-~~gvlff~lv~-~~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid--~~~lWvlsnrl~~   63 (91)
                      | ..|.||++... ..+|.+-+....    ...++..  +.+.+|+||.+|  ++.||+.-....+
T Consensus       130 dp~~g~ly~td~~~~~~I~r~~~dG~----~~~~~~~--~~l~~Pnglavd~~~~~lY~aD~~~~~  189 (318)
T 3sov_A          130 DPSSGFMYWTDWGEVPKIERAGMDGS----SRFIIIN--SEIYWPNGLTLDYEEQKLYWADAKLNF  189 (318)
T ss_dssp             EGGGTEEEEEECSSSCEEEEEETTSC----SCEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             eCCCCEEEEEecCCCCEEEEEEcCCC----CeEEEEE--CCCCCccEEEEeccCCEEEEEECCCCE
Confidence            5 57999999975 688999887653    2334443  247899999999  6788876444333

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=85.92  E-value=2.3  Score=29.52  Aligned_cols=49  Identities=8%  Similarity=-0.018  Sum_probs=36.1

Q ss_pred             CccCeEEEEeCCCCcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe-CCEEEEEE
Q psy13486          2 DHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV-GDDLWVIS   58 (91)
Q Consensus         2 d~~gvlff~lv~~~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid-~~~lWvls   58 (91)
                      |.+|.||++......|..|+.....     ..++.-+   ..|.+|.++ +|.|||-.
T Consensus        40 ~~~g~lyv~d~~~~~I~~~d~~g~~-----~~~~~~~---~~p~gia~~~dG~l~vad   89 (306)
T 2p4o_A           40 APDGTIFVTNHEVGEIVSITPDGNQ-----QIHATVE---GKVSGLAFTSNGDLVATG   89 (306)
T ss_dssp             CTTSCEEEEETTTTEEEEECTTCCE-----EEEEECS---SEEEEEEECTTSCEEEEE
T ss_pred             CCCCCEEEEeCCCCeEEEECCCCce-----EEEEeCC---CCceeEEEcCCCcEEEEe
Confidence            5678999999999999999987542     1222222   258999998 78888865

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=85.41  E-value=2.1  Score=28.92  Aligned_cols=50  Identities=6%  Similarity=0.023  Sum_probs=37.0

Q ss_pred             ccCeEEEEeCCCCcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe--CCEEEEEE
Q psy13486          3 HNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV--GDDLWVIS   58 (91)
Q Consensus         3 ~~gvlff~lv~~~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid--~~~lWvls   58 (91)
                      .+|.||++....+.|...+.....    ...+..  ..+..|.++.+|  ++.||+..
T Consensus        89 ~~~~lyv~d~~~~~I~~~~~~g~~----~~~~~~--~~~~~P~~i~vd~~~g~lyv~~  140 (267)
T 1npe_A           89 LGRTIFWTDSQLDRIEVAKMDGTQ----RRVLFD--TGLVNPRGIVTDPVRGNLYWTD  140 (267)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCS----CEEEEC--SSCSSEEEEEEETTTTEEEEEE
T ss_pred             cCCeEEEEECCCCEEEEEEcCCCC----EEEEEE--CCCCCccEEEEeeCCCEEEEEE
Confidence            468999999999999999886542    233332  235689999999  57888864

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=85.34  E-value=1.4  Score=29.74  Aligned_cols=49  Identities=18%  Similarity=0.299  Sum_probs=36.8

Q ss_pred             ccCeEEEEeCCCCcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEeCCEEEEEE
Q psy13486          3 HNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDDLWVIS   58 (91)
Q Consensus         3 ~~gvlff~lv~~~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid~~~lWvls   58 (91)
                      ..+.||++.-..+.|.+.+....    +...+..   .+.+|.+|.++++.||+-.
T Consensus       177 ~~~~lyv~d~~~~~I~~~~~~g~----~~~~~~~---~~~~P~gi~~d~~~lyva~  225 (267)
T 1npe_A          177 FSSQLCWVDAGTHRAECLNPAQP----GRRKVLE---GLQYPFAVTSYGKNLYYTD  225 (267)
T ss_dssp             TTTEEEEEETTTTEEEEEETTEE----EEEEEEE---CCCSEEEEEEETTEEEEEE
T ss_pred             CCCEEEEEECCCCEEEEEecCCC----ceEEEec---CCCCceEEEEeCCEEEEEE
Confidence            35799999999999999998753    2333332   4678999998888898843

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=85.20  E-value=1.9  Score=30.23  Aligned_cols=56  Identities=16%  Similarity=0.175  Sum_probs=39.4

Q ss_pred             CccCeEEEEeCCCCcEEEeeCCCCCCCCceeeEee------cCCeeeeccceEEe--CCEEEEEEe
Q psy13486          2 DHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDI------DNEALIFPSDVKVV--GDDLWVISD   59 (91)
Q Consensus         2 d~~gvlff~lv~~~aI~cWn~~~~~~~~n~~iia~------d~~~l~f~sdlkid--~~~lWvlsn   59 (91)
                      |.+|.||++......|..|+......  -+..+..      ....+..|.++.++  +|.|||-..
T Consensus        99 d~~g~l~v~d~~~~~v~~~~~~g~~~--~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~  162 (329)
T 3fvz_A           99 DTDGNYWVTDVALHQVFKLDPHSKEG--PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDG  162 (329)
T ss_dssp             CTTSCEEEEETTTTEEEEECTTCSSC--CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEEC
T ss_pred             CCCCCEEEEECCCCEEEEEeCCCCeE--EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeC
Confidence            67888999999999999999865421  1112211      13467789999998  678888653

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=85.08  E-value=3.3  Score=34.06  Aligned_cols=56  Identities=13%  Similarity=0.241  Sum_probs=40.2

Q ss_pred             C-ccCeEEEEeCCC-CcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe--CCEEEEEEeCCcc
Q psy13486          2 D-HNGILYFNLIDR-NAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV--GDDLWVISDRMPI   63 (91)
Q Consensus         2 d-~~gvlff~lv~~-~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid--~~~lWvlsnrl~~   63 (91)
                      | ..|.||++.... ..|..-+....    ...++..  ..|.+|.||.+|  ++.||+.--+.++
T Consensus       522 Dp~~g~LYwtD~g~~~~I~~~~~dG~----~~~~lv~--~~l~~P~GLavD~~~~~LYwaD~~~~~  581 (791)
T 3m0c_C          522 DPVHGFMYWTDWGTPAKIKKGGLNGV----DIYSLVT--ENIQWPNGITLDLLSGRLYWVDSKLHS  581 (791)
T ss_dssp             ETTTTEEEEEECSSSCEEEEEETTSC----CEEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             ecCCCCEEEecCCCCCeEEEEecCCC----ceEEEEe--CCCCCceEEEEecCCCeEEEEeCCCCc
Confidence            5 579999999876 77888877654    3444443  457899999999  7788876444433

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=84.74  E-value=2.5  Score=33.50  Aligned_cols=51  Identities=12%  Similarity=0.146  Sum_probs=38.6

Q ss_pred             ccCeEEEEeCCCCcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe--CCEEEEEEe
Q psy13486          3 HNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV--GDDLWVISD   59 (91)
Q Consensus         3 ~~gvlff~lv~~~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid--~~~lWvlsn   59 (91)
                      .+|.||++......|..++....    ....+..  ..+..|.||++|  +++||+--.
T Consensus       359 ~~~~ly~sD~~~~~I~r~~~~g~----~~~~v~~--~~~~~p~GlAvD~~~~~lY~tD~  411 (619)
T 3s94_A          359 VEGYIYWTDDEVRAIRRSFIDGS----GSQFVVT--AQIAHPDGIAVDWVARNLYWTDT  411 (619)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSC----SCEEEEC--SSCSCCCEEEEETTTTEEEEEET
T ss_pred             CCCeEEEEeCCCCeEEEEEcCCC----ccEEEEE--CCCCCcCceEEecccCcEEEEeC
Confidence            57999999999999999998764    2233443  346789999999  778877543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=84.26  E-value=1.9  Score=29.98  Aligned_cols=57  Identities=16%  Similarity=0.240  Sum_probs=36.3

Q ss_pred             Cc-cCeEEEEeCC-----------------CCcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe-CC-EEEEEE---
Q psy13486          2 DH-NGILYFNLID-----------------RNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV-GD-DLWVIS---   58 (91)
Q Consensus         2 d~-~gvlff~lv~-----------------~~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid-~~-~lWvls---   58 (91)
                      |. +|.||++...                 ...|.+++..+.    ....+.   ..+.+|+||.++ +| .|||--   
T Consensus       134 d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~----~~~~~~---~~~~~p~gia~~~dg~~lyv~d~~~  206 (322)
T 2fp8_A          134 DQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK----ETTLLL---KELHVPGGAEVSADSSFVLVAEFLS  206 (322)
T ss_dssp             CTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT----EEEEEE---EEESCCCEEEECTTSSEEEEEEGGG
T ss_pred             ecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC----EEEEec---cCCccCcceEECCCCCEEEEEeCCC
Confidence            55 8999998754                 246888887543    122222   246799999999 66 488763   


Q ss_pred             eCCccee
Q psy13486         59 DRMPIHL   65 (91)
Q Consensus        59 nrl~~f~   65 (91)
                      +++.+|-
T Consensus       207 ~~I~~~~  213 (322)
T 2fp8_A          207 HQIVKYW  213 (322)
T ss_dssp             TEEEEEE
T ss_pred             CeEEEEE
Confidence            3444443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=83.35  E-value=2.2  Score=34.15  Aligned_cols=53  Identities=21%  Similarity=0.245  Sum_probs=41.8

Q ss_pred             C-ccCeEEEEeCCCCcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEeCCEEEEEE
Q psy13486          2 D-HNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDDLWVIS   58 (91)
Q Consensus         2 d-~~gvlff~lv~~~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid~~~lWvls   58 (91)
                      | ..|.||++......|...+...    .+..+++.....+..|.+|.++++.||+..
T Consensus       548 d~~~~~LY~aD~~~~~I~~~d~dG----~~~~~~~~~~~~~~~P~glavd~~~lywtd  601 (699)
T 1n7d_A          548 DLLSGRLYWVDSKLHSISSIDVNG----GNRKTILEDEKRLAHPFSLAVFEDKVFWTD  601 (699)
T ss_dssp             CTTTCCEEEEETTTTEEEEECSSS----SCCEEECCCSSSCSSCCCCEEETTEEEEEC
T ss_pred             eccCCEEEEEecCCCeEEEEccCC----CceEEEEecCCcCCCceEeEEECCEEEEEe
Confidence            5 5789999999999999998864    356677776667889999999955666654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=82.98  E-value=1.6  Score=30.17  Aligned_cols=54  Identities=17%  Similarity=0.140  Sum_probs=33.8

Q ss_pred             CccC-eEEEEeCCC-----CcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe-CCEEEEEE
Q psy13486          2 DHNG-ILYFNLIDR-----NAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV-GDDLWVIS   58 (91)
Q Consensus         2 d~~g-vlff~lv~~-----~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid-~~~lWvls   58 (91)
                      +.+| .||++.-..     ..|..|+....- ..+..+++...  ...|.+|.+| +|+||+-+
T Consensus       196 spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~--~~~pdgi~~d~~G~lwv~~  256 (305)
T 3dr2_A          196 SPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVP--DGLPDGFCVDRGGWLWSSS  256 (305)
T ss_dssp             CTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCS--SSCCCSEEECTTSCEEECC
T ss_pred             cCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECC--CCCCCeEEECCCCCEEEec
Confidence            3344 477776652     678888875432 22233333322  2468999999 89999976

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=80.70  E-value=4.8  Score=30.03  Aligned_cols=52  Identities=13%  Similarity=0.139  Sum_probs=37.9

Q ss_pred             Cc-cCeEEEEeCCCCcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe-CCE-EEEEE
Q psy13486          2 DH-NGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV-GDD-LWVIS   58 (91)
Q Consensus         2 d~-~gvlff~lv~~~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid-~~~-lWvls   58 (91)
                      |. +|.||++......|..++.....    ...++..+ ...+|.+|.++ +|+ ||+..
T Consensus       234 dp~~g~lyv~d~~~~~V~~~~~~~~~----~~~~~~~~-~~~~P~gia~~pdG~~lyv~d  288 (430)
T 3tc9_A          234 HPINGELYFNSWNAGQVFRYDFTTQE----TTPLFTIQ-DSGWEFHIQFHPSGNYAYIVV  288 (430)
T ss_dssp             CTTTCCEEEEETTTTEEEEEETTTTE----EEEEEECS-SSSCCEEEEECTTSSEEEEEE
T ss_pred             eCCCCEEEEEECCCCEEEEEECCCCc----EEEEEEcC-CCCcceeEEEcCCCCEEEEEE
Confidence            53 89999999999999999987542    21233333 23689999999 665 88864

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=80.68  E-value=2.2  Score=34.16  Aligned_cols=56  Identities=11%  Similarity=0.236  Sum_probs=37.3

Q ss_pred             C-ccCeEEEEeCCC-CcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe--CCEEEEEEeCCcc
Q psy13486          2 D-HNGILYFNLIDR-NAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV--GDDLWVISDRMPI   63 (91)
Q Consensus         2 d-~~gvlff~lv~~-~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid--~~~lWvlsnrl~~   63 (91)
                      | ..|.||++.... ..|...+....    ...+++..  .+.+|+||.+|  ++.||+.-...++
T Consensus       504 Dp~~g~ly~td~~~~~~I~~~~~dG~----~~~~l~~~--~l~~PnGlavd~~~~~LY~aD~~~~~  563 (699)
T 1n7d_A          504 DPVHGFMYWTDWGTPAKIKKGGLNGV----DIYSLVTE--NIQWPNGITLDLLSGRLYWVDSKLHS  563 (699)
T ss_dssp             CSSSSCCEECCCSSSCCEEBCCSSSC----CCCEESCS--SCSSCCCEEECTTTCCEEEEETTTTE
T ss_pred             ccCCCcEEEcccCCCCeEEEEeCCCC----CeeEEEeC--CCCCccEEEEeccCCEEEEEecCCCe
Confidence            5 578899988764 67777766543    23344332  47899999999  5788876544443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	91
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	93.85
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	93.3
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	92.77
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	92.69
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	92.11
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	91.89
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	91.65
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	91.41
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	91.13
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	90.57
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	89.64
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	87.17
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	86.75
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	86.66
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	86.03
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	82.08

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=93.85  E-value=0.053  Score=37.14  Aligned_cols=52  Identities=15%  Similarity=0.075  Sum_probs=39.1

Q ss_pred             CccCeEEEEeCCCCcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe-CCEEEEEEe
Q psy13486          2 DHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV-GDDLWVISD   59 (91)
Q Consensus         2 d~~gvlff~lv~~~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid-~~~lWvlsn   59 (91)
                      |++|.|||+.+....|..|+..+.-   -...++..   ...|.+|.++ +|.|||.+.
T Consensus        48 D~~G~Ly~~D~~~g~I~ri~p~g~~---~~~~~~~~---~~~p~gla~~~dG~l~va~~  100 (319)
T d2dg1a1          48 DRQGQLFLLDVFEGNIFKINPETKE---IKRPFVSH---KANPAAIKIHKDGRLFVCYL  100 (319)
T ss_dssp             CTTSCEEEEETTTCEEEEECTTTCC---EEEEEECS---SSSEEEEEECTTSCEEEEEC
T ss_pred             CCCCCEEEEECCCCEEEEEECCCCe---EEEEEeCC---CCCeeEEEECCCCCEEEEec
Confidence            7789999999999999999987642   12233322   2369999999 899998753

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=93.30  E-value=0.11  Score=34.77  Aligned_cols=53  Identities=8%  Similarity=-0.057  Sum_probs=41.6

Q ss_pred             CccCeEEEEeCCCCcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe-CCEEEEEEeCCc
Q psy13486          2 DHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV-GDDLWVISDRMP   62 (91)
Q Consensus         2 d~~gvlff~lv~~~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid-~~~lWvlsnrl~   62 (91)
                      +.+|.||++......|.+|++...     ..+++.-+   ..|.++.++ +|+|||....-.
T Consensus        36 ~pdG~l~vt~~~~~~I~~i~p~g~-----~~~~~~~~---~~~~gla~~~dG~l~v~~~~~~   89 (302)
T d2p4oa1          36 APDGTIFVTNHEVGEIVSITPDGN-----QQIHATVE---GKVSGLAFTSNGDLVATGWNAD   89 (302)
T ss_dssp             CTTSCEEEEETTTTEEEEECTTCC-----EEEEEECS---SEEEEEEECTTSCEEEEEECTT
T ss_pred             CCCCCEEEEeCCCCEEEEEeCCCC-----EEEEEcCC---CCcceEEEcCCCCeEEEecCCc
Confidence            578999999999999999998765     23444444   368999999 899999875543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.77  E-value=0.087  Score=34.63  Aligned_cols=51  Identities=20%  Similarity=0.157  Sum_probs=38.1

Q ss_pred             CCccCeEEEEeCCCCcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe-CCEEEEE
Q psy13486          1 MDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV-GDDLWVI   57 (91)
Q Consensus         1 ~d~~gvlff~lv~~~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid-~~~lWvl   57 (91)
                      +|.+|.||.+......|...+..+..    ..++  ....+.+|.+|.++ +|+|||-
T Consensus       189 ~d~~g~l~vsd~~~~~i~~~~~~~~~----~~~~--~~~~~~~P~~i~~d~~g~l~va  240 (260)
T d1rwia_         189 VDEAGTVYVTEHNTNQVVKLLAGSTT----STVL--PFTGLNTPLAVAVDSDRTVYVA  240 (260)
T ss_dssp             ECTTCCEEEEETTTTEEEEECTTCSC----CEEC--CCCSCCCEEEEEECTTCCEEEE
T ss_pred             eeeeeeeeeeecCCCEEEEEeCCCCe----EEEE--ccCCCCCeEEEEEeCCCCEEEE
Confidence            36789999999999999998776542    1222  22346789999999 8899985

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=92.69  E-value=0.16  Score=34.41  Aligned_cols=56  Identities=9%  Similarity=-0.115  Sum_probs=39.9

Q ss_pred             ccCeEEEEeCCCCcEEEeeCCCCC-CCCc-eeeEeecCCeeeeccceEEe-CCEEEEEE
Q psy13486          3 HNGILYFNLIDRNAVGCWNSQYPY-KPEN-IGHIDIDNEALIFPSDVKVV-GDDLWVIS   58 (91)
Q Consensus         3 ~~gvlff~lv~~~aI~cWn~~~~~-~~~n-~~iia~d~~~l~f~sdlkid-~~~lWvls   58 (91)
                      ....||++.-....|.+.+..... ...+ ..+.+..+....+|+|+.+| +|+|||-.
T Consensus       158 d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~  216 (295)
T d2ghsa1         158 DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNAR  216 (295)
T ss_dssp             TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEE
T ss_pred             CCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeee
Confidence            345699999999999999875432 1222 33445555556689999999 99999964

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=92.11  E-value=0.12  Score=34.56  Aligned_cols=56  Identities=18%  Similarity=0.120  Sum_probs=44.9

Q ss_pred             CCccCeEEEEeCCCCcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe-----CCEEEEEEeCC
Q psy13486          1 MDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV-----GDDLWVISDRM   61 (91)
Q Consensus         1 ~d~~gvlff~lv~~~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid-----~~~lWvlsnrl   61 (91)
                      +|.+|.||.+....++|.++++...     ...++.-...+..|+++.+.     .+.|||-|+.-
T Consensus       215 ~d~dG~l~va~~~~~~V~~i~p~G~-----~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~g  275 (302)
T d2p4oa1         215 FDVEGNLYGATHIYNSVVRIAPDRS-----TTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  275 (302)
T ss_dssp             EBTTCCEEEECBTTCCEEEECTTCC-----EEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             ECCCCCEEEEEcCCCcEEEECCCCC-----EEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCCC
Confidence            3678999999999999999987654     45667766678889999995     24699998864

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.89  E-value=0.1  Score=34.28  Aligned_cols=53  Identities=17%  Similarity=0.242  Sum_probs=39.1

Q ss_pred             CccCeEEEEeCCCCcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe-CCEEEEEEeC
Q psy13486          2 DHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV-GDDLWVISDR   60 (91)
Q Consensus         2 d~~gvlff~lv~~~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid-~~~lWvlsnr   60 (91)
                      |.+|.+|++......|..++.....      ........+..|.||.+| +|+|||-...
T Consensus       148 ~~~g~~~v~~~~~~~i~~~d~~~~~------~~~~~~~~~~~p~gi~~d~~g~l~vsd~~  201 (260)
T d1rwia_         148 DNSGNVYVTDTDNNRVVKLEAESNN------QVVLPFTDITAPWGIAVDEAGTVYVTEHN  201 (260)
T ss_dssp             CTTCCEEEEEGGGTEEEEECTTTCC------EEECCCSSCCSEEEEEECTTCCEEEEETT
T ss_pred             cCCCCEeeeccccccccccccccce------eeeeeccccCCCccceeeeeeeeeeeecC
Confidence            5678899998888889999877642      222223356789999999 8899987643

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=91.65  E-value=0.082  Score=36.12  Aligned_cols=59  Identities=14%  Similarity=0.009  Sum_probs=39.0

Q ss_pred             cCeEEEEeCCCCcEEEeeCCCCCC---CCceeeEeecCCeeeeccceEEe-CCEEEEEEeCCcc
Q psy13486          4 NGILYFNLIDRNAVGCWNSQYPYK---PENIGHIDIDNEALIFPSDVKVV-GDDLWVISDRMPI   63 (91)
Q Consensus         4 ~gvlff~lv~~~aI~cWn~~~~~~---~~n~~iia~d~~~l~f~sdlkid-~~~lWvlsnrl~~   63 (91)
                      .+.||++....+.|..++...+-.   +... .+.........|+||.+| +|+|||-...-.+
T Consensus       188 g~~lyvad~~~~~I~~~d~~~~g~~~~~~~~-~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~  250 (319)
T d2dg1a1         188 EKVLWVTETTANRLHRIALEDDGVTIQPFGA-TIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGR  250 (319)
T ss_dssp             SSEEEEEEGGGTEEEEEEECTTSSSEEEEEE-EEEEECCSSSEEEEEEEBTTCCEEEEEETTTE
T ss_pred             cceEEEecccCCceEEEEEcCCCceeccccc-eeeeccCCccceeeeeEcCCCCEEEEEcCCCE
Confidence            347999999999999998765421   1112 222223344569999999 9999997654443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.41  E-value=0.31  Score=32.63  Aligned_cols=63  Identities=11%  Similarity=0.172  Sum_probs=44.0

Q ss_pred             ccCeEEEEeCCCC-cEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe--CCEEEEEEeCCcceecCCCCC
Q psy13486          3 HNGILYFNLIDRN-AVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV--GDDLWVISDRMPIHLESELNF   71 (91)
Q Consensus         3 ~~gvlff~lv~~~-aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid--~~~lWvlsnrl~~f~~~~l~~   71 (91)
                      .+|.||++..... .|.+-+....    +...++.  +.+.+|+||.+|  ++.||+.-....+.....+|-
T Consensus       130 ~~g~ly~~~~~~~~~I~r~~~dGs----~~~~l~~--~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG  195 (266)
T d1ijqa1         130 VHGFMYWTDWGTPAKIKKGGLNGV----DIYSLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  195 (266)
T ss_dssp             TTTEEEEEECSSSCEEEEEETTSC----CEEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             ccCeEEEeccCCCcceeEeccCCC----ceecccc--cccceeeEEEeeccccEEEEecCCcCEEEEEECCC
Confidence            6899999987654 6888887654    4555554  457899999999  667888655555554444443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=91.13  E-value=0.092  Score=35.98  Aligned_cols=59  Identities=12%  Similarity=0.008  Sum_probs=41.8

Q ss_pred             eEEEEeCCCCcEEEeeCCCCCCCCceeeEeecC-CeeeeccceEEe-CCEEEEEE---eCCcce
Q psy13486          6 ILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDN-EALIFPSDVKVV-GDDLWVIS---DRMPIH   64 (91)
Q Consensus         6 vlff~lv~~~aI~cWn~~~~~~~~n~~iia~d~-~~l~f~sdlkid-~~~lWvls---nrl~~f   64 (91)
                      .||.+.-....|..++...+-...+..+.+.-+ ...-.|+||.+| +|+|||-.   ++..+|
T Consensus       189 ~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~  252 (314)
T d1pjxa_         189 QLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVF  252 (314)
T ss_dssp             EEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred             EEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEE
Confidence            688888888899998876554445555555433 233469999999 99999974   555555

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.57  E-value=0.13  Score=34.15  Aligned_cols=51  Identities=12%  Similarity=0.238  Sum_probs=39.0

Q ss_pred             CccCeEEEEeCCCCcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe-CCEEEEE
Q psy13486          2 DHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV-GDDLWVI   57 (91)
Q Consensus         2 d~~gvlff~lv~~~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid-~~~lWvl   57 (91)
                      |.+|.+|.+.-....|.-+|....+    +..++. +..+.+|.||.+| +|++||-
T Consensus       165 d~~g~i~v~d~~~~~V~~~d~~G~~----~~~~g~-~g~~~~P~giavD~~G~i~Va  216 (279)
T d1q7fa_         165 NDKQEIFISDNRAHCVKVFNYEGQY----LRQIGG-EGITNYPIGVGINSNGEILIA  216 (279)
T ss_dssp             CSSSEEEEEEGGGTEEEEEETTCCE----EEEESC-TTTSCSEEEEEECTTCCEEEE
T ss_pred             ccceeEEeeeccccceeeeecCCce----eeeecc-cccccCCcccccccCCeEEEE
Confidence            5778999999988899988876543    333333 3367899999999 8899985

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.64  E-value=0.49  Score=31.07  Aligned_cols=65  Identities=15%  Similarity=0.115  Sum_probs=41.6

Q ss_pred             CccCeEEEEeCCCC-cEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe-CCEEEEEEe--CCcceecCCCCC
Q psy13486          2 DHNGILYFNLIDRN-AVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV-GDDLWVISD--RMPIHLESELNF   71 (91)
Q Consensus         2 d~~gvlff~lv~~~-aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid-~~~lWvlsn--rl~~f~~~~l~~   71 (91)
                      |.+|.||.+.-..+ .|..++....|    +..+... .....|.++.++ +|.|+|-+.  |.++|-+.++.+
T Consensus       208 D~~G~i~Vad~~~~~~v~~f~~~G~~----~~~~~~~-~~~~~p~~vav~~dG~l~V~~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         208 NSNGEILIADNHNNFNLTIFTQDGQL----ISALESK-VKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             CTTCCEEEEECSSSCEEEEECTTSCE----EEEEEES-SCCSCEEEEEEETTTEEEEEETTTEEEEEECSCCCC
T ss_pred             ccCCeEEEEECCCCcEEEEECCCCCE----EEEEeCC-CCCCCEeEEEEeCCCcEEEEeCCCeEEEEEeeeecC
Confidence            67889999876444 48888765443    3344433 345689999999 889877431  233455555544

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.17  E-value=0.61  Score=31.08  Aligned_cols=52  Identities=19%  Similarity=0.215  Sum_probs=42.9

Q ss_pred             ccCeEEEEeCCCCcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEeCCEEEEEE
Q psy13486          3 HNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDDLWVIS   58 (91)
Q Consensus         3 ~~gvlff~lv~~~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid~~~lWvls   58 (91)
                      .++.||++.-....|.+=+....    +..++......+..|-+|.++++.||+-.
T Consensus       174 ~~~~lYw~d~~~~~I~~~~~dG~----~~~~~~~~~~~~~~p~~lav~~~~ly~td  225 (266)
T d1ijqa1         174 LSGRLYWVDSKLHSISSIDVNGG----NRKTILEDEKRLAHPFSLAVFEDKVFWTD  225 (266)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSC----SCEEEEECTTTTSSEEEEEEETTEEEEEE
T ss_pred             cccEEEEecCCcCEEEEEECCCC----CEEEEEeCCCcccccEEEEEECCEEEEEE
Confidence            57889999999999999887654    56778888878889999999977888743

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.75  E-value=0.89  Score=30.27  Aligned_cols=58  Identities=17%  Similarity=0.175  Sum_probs=39.6

Q ss_pred             C-ccCeEEEEeCCCC--cEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe--CCEEEEEEeCCccee
Q psy13486          2 D-HNGILYFNLIDRN--AVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV--GDDLWVISDRMPIHL   65 (91)
Q Consensus         2 d-~~gvlff~lv~~~--aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid--~~~lWvlsnrl~~f~   65 (91)
                      | ..|.||++.....  +|.+=+....    +...++.+  .+.+|.||.+|  ++.||+.-....+..
T Consensus       130 dp~~g~ly~t~~~~~~~~I~r~~~dG~----~~~~i~~~--~~~~P~glaiD~~~~~lYw~d~~~~~I~  192 (263)
T d1npea_         130 DPVRGNLYWTDWNRDNPKIETSHMDGT----NRRILAQD--NLGLPNGLTFDAFSSQLCWVDAGTHRAE  192 (263)
T ss_dssp             ETTTTEEEEEECCSSSCEEEEEETTSC----CCEEEECT--TCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             ecccCcEEEeecCCCCcEEEEecCCCC----Cceeeeee--cccccceEEEeecCcEEEEEeCCCCEEE
Confidence            5 6889999987654  3777776654    44455543  57799999999  667877654444444

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=86.66  E-value=0.82  Score=30.62  Aligned_cols=49  Identities=10%  Similarity=0.028  Sum_probs=35.6

Q ss_pred             ccCeEEEEeCCCCcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe-CCEEEEEEe
Q psy13486          3 HNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV-GDDLWVISD   59 (91)
Q Consensus         3 ~~gvlff~lv~~~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid-~~~lWvlsn   59 (91)
                      ++|.|||.-+....|.+|+..+.    .. .++.-+.   .|+++..+ +|.||+-+.
T Consensus        28 ~~~~l~wvDi~~~~I~r~d~~~g----~~-~~~~~~~---~~~~i~~~~dg~l~va~~   77 (295)
T d2ghsa1          28 ASGTAWWFNILERELHELHLASG----RK-TVHALPF---MGSALAKISDSKQLIASD   77 (295)
T ss_dssp             TTTEEEEEEGGGTEEEEEETTTT----EE-EEEECSS---CEEEEEEEETTEEEEEET
T ss_pred             CCCEEEEEECCCCEEEEEECCCC----eE-EEEECCC---CcEEEEEecCCCEEEEEe
Confidence            78999999999999999998775    12 2333332   46677777 888888553

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=86.03  E-value=0.34  Score=32.93  Aligned_cols=52  Identities=12%  Similarity=0.181  Sum_probs=33.9

Q ss_pred             CccC-eEEEEeCCCCcEEEeeCCCCCCCCceeeEee--cCCeeeeccceEEe-CCEEEEEE
Q psy13486          2 DHNG-ILYFNLIDRNAVGCWNSQYPYKPENIGHIDI--DNEALIFPSDVKVV-GDDLWVIS   58 (91)
Q Consensus         2 d~~g-vlff~lv~~~aI~cWn~~~~~~~~n~~iia~--d~~~l~f~sdlkid-~~~lWvls   58 (91)
                      |++| .||.+-. ..+|.+.+.....    ..++..  +...+.+|+|+.+| +|+|||-.
T Consensus        79 ~~dg~~l~vad~-~~~i~~~~~~g~~----~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd  134 (314)
T d1pjxa_          79 DRDANQLFVADM-RLGLLVVQTDGTF----EEIAKKDSEGRRMQGCNDCAFDYEGNLWITA  134 (314)
T ss_dssp             CSSSSEEEEEET-TTEEEEEETTSCE----EECCSBCTTSCBCBCCCEEEECTTSCEEEEE
T ss_pred             eCCCCEEEEEEC-CCeEEEEeCCCcE----EEEEeccccccccCCCcEEEECCCCCEEEec
Confidence            5555 4555543 4678888876542    222322  33467789999999 99999853

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.08  E-value=2.3  Score=28.06  Aligned_cols=64  Identities=13%  Similarity=0.150  Sum_probs=42.5

Q ss_pred             C-ccCeEEEEeCCCCcEEEeeCCCCCCCCceeeEeecCCeeeeccceEEe--CCEEEEEEeCCcceecCCCCC
Q psy13486          2 D-HNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV--GDDLWVISDRMPIHLESELNF   71 (91)
Q Consensus         2 d-~~gvlff~lv~~~aI~cWn~~~~~~~~n~~iia~d~~~l~f~sdlkid--~~~lWvlsnrl~~f~~~~l~~   71 (91)
                      | +++-||++......|.+-+....    +...+...  .+.-|.+|.+|  .++||+....-.+.....+|.
T Consensus        44 D~~~~~iywsd~~~~~I~~~~l~g~----~~~~v~~~--~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg  110 (263)
T d1npea_          44 DCVDKVVYWTDISEPSIGRASLHGG----EPTTIIRQ--DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (263)
T ss_dssp             ETTTTEEEEEETTTTEEEEEESSSC----CCEEEECT--TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EeCCCEEEEEECCCCeEEEEEcccC----CcEEEEEe--ccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence            5 78899999999999998877644    22333321  24468999999  778887654444444444443