Psyllid ID: psy13491

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------7
Protein Sequence
MKAKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRGGPRGRGRGRVSRGAAMYGGYRPVRRAR
Secondary Structure (PSIPRED)
ccccHHHHHHHHHccccccccccEEEccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHcHHcccccEEEEccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MKAKRDEVQTAMAMDEslfrgrqikvnpkrtnrpgisttnrggprgrgrgrvsrgaamyggyrpvrrar
Flexible Loop (DISEMBL)
mkakrdevqtamamdeslfrgrqikvnpkrtnrpgisttnrggprgrgrgrvsrgaamyggyrpvrrar
Low Complexity Region (SEG)
MKAKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNrggprgrgrgrvsrgAAMYGGYRPVRRAR
Disordered region (IsUnstruct)
*********************************************************************
Disordered Region (DISOPRED)
******E***AMAMDESLFRGRQIKVNPKRTNRP***********************************
Disordered Region (DISEMBL)
**********AMAMDESLFRGRQIKVNPKRTNRPGISTT************VSRGAAMYGGYRPVRRAR
Disordered Region (DISPRO)
*************MDESLFRGRQIKVNPKRTNRPGI*TTN**G**************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKAKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRGGPRGRGRGRVSRGAAMYGGYRPVRRAR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	69	2.2.26 [Sep-21-2011]
Q28165	306	Polyadenylate-binding pro	yes	N/A	0.739	0.166	0.666	5e-13
Q86U42	306	Polyadenylate-binding pro	no	N/A	0.739	0.166	0.666	6e-13
Q8CCS6	302	Polyadenylate-binding pro	yes	N/A	0.739	0.168	0.666	9e-13
Q7KNF2	224	Polyadenylate-binding pro	yes	N/A	0.855	0.263	0.640	3e-12
Q28ZX3	225	Polyadenylate-binding pro	yes	N/A	0.898	0.275	0.597	1e-11
Q6NVP7	296	Polyadenylate-binding pro	yes	N/A	0.608	0.141	0.714	4e-11
Q7ZXB8	295	Polyadenylate-binding pro	N/A	N/A	0.608	0.142	0.714	4e-11
Q9DDY9	296	Polyadenylate-binding pro	N/A	N/A	0.608	0.141	0.714	5e-11
A6NDY0	278	Embryonic polyadenylate-b	no	N/A	0.710	0.176	0.612	4e-08
B0BNE4	269	Embryonic polyadenylate-b	no	N/A	0.739	0.189	0.568	6e-08

>sp|Q28165|PABP2_BOVIN Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3

 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 34/51 (66%), Positives = 43/51 (84%)

Query: 3   AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRGGPRGRGRGRVS 53
           + ++ V+T++A+DESLFRGRQIKV PKRTNRPGISTT+RG PR R R R +
Sbjct: 221 SDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTT 271

Involved in the 3'-end formation of mRNA precursors (pre-mRNA) by the addition of a poly(A) tail of 200-250 nt to the upstream cleavage product. Stimulates poly(A) polymerase (PAPOLA) conferring processivity on the poly(A) tail elongation reaction and controls also the poly(A) tail length. Increases the affinity of poly(A) polymerase for RNA. Is also present at various stages of mRNA metabolism including nucleocytoplasmic trafficking and nonsense-mediated decay (NMD) of mRNA. Cooperates with SKIP to synergistically activate E-box-mediated transcription through MYOD1 and may regulate the expression of muscle-specific genes. Binds to poly(A) and to poly(G) with high affinity. May protect the poly(A) tail from degradation.
Bos taurus (taxid: 9913)

>sp|Q86U42|PABP2_HUMAN Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 34/51 (66%), Positives = 43/51 (84%)

Query: 3   AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRGGPRGRGRGRVS 53
           + ++ V+T++A+DESLFRGRQIKV PKRTNRPGISTT+RG PR R R R +
Sbjct: 221 SDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTT 271

Involved in the 3'-end formation of mRNA precursors (pre-mRNA) by the addition of a poly(A) tail of 200-250 nt to the upstream cleavage product. Stimulates poly(A) polymerase (PAPOLA) conferring processivity on the poly(A) tail elongation reaction and controls also the poly(A) tail length. Increases the affinity of poly(A) polymerase for RNA. Is also present at various stages of mRNA metabolism including nucleocytoplasmic trafficking and nonsense-mediated decay (NMD) of mRNA. Cooperates with SKIP to synergistically activate E-box-mediated transcription through MYOD1 and may regulate the expression of muscle-specific genes. Binds to poly(A) and to poly(G) with high affinity. May protect the poly(A) tail from degradation.

Homo sapiens (taxid: 9606)

>sp|Q8CCS6|PABP2_MOUSE Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=2 SV=3

 Score = 72.4 bits (176), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 34/51 (66%), Positives = 43/51 (84%)

Query: 3   AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRGGPRGRGRGRVS 53
           + ++ V+T++A+DESLFRGRQIKV PKRTNRPGISTT+RG PR R R R +
Sbjct: 217 SDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRSRYRARTT 267

Involved in the 3'-end formation of mRNA precursors (pre-mRNA) by the addition of a poly(A) tail of 200-250 nt to the upstream cleavage product. Stimulates poly(A) polymerase (PAPOLA) conferring processivity on the poly(A) tail elongation reaction and controls also the poly(A) tail length. Increases the affinity of poly(A) polymerase for RNA. Is also present at various stages of mRNA metabolism including nucleocytoplasmic trafficking and nonsense-mediated decay (NMD) of mRNA. Cooperates with SKIP to synergistically activate E-box-mediated transcription through MYOD1 and may regulate the expression of muscle-specific genes. Binds to poly(A) and to poly(G) with high affinity. May protect the poly(A) tail from degradation.

Mus musculus (taxid: 10090)

>sp|Q7KNF2|PABP2_DROME Polyadenylate-binding protein 2 OS=Drosophila melanogaster GN=Pabp2 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 48/64 (75%), Gaps = 5/64 (7%)

Query: 8   VQTAMAMDESLFRGRQIKVNPKRTNRPGISTTN---RGGPRGRGRGRVSRGAAMYGGYRP 64
           V+TA+AM+E+LFRGRQIKV  KRTNRPG+STTN   RG  RGRG  RVSR A  +  +R 
Sbjct: 150 VETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRG-ARVSR-ACCHSTFRG 207

Query: 65  VRRA 68
            RRA
Sbjct: 208 ARRA 211

Involved in the 3'-end formation of mRNA precursors (pre-mRNA) by the addition of a poly(A) tail of 200-250 nt to the upstream cleavage product. Stimulates poly(A) polymerase (PAPOLA) conferring processivity on the poly(A) tail elongation reaction and controls also the poly(A) tail length. Increases the affinity of poly(A) polymerase for RNA. Binds to poly(A) and to poly(G) with high affinity. May protect the poly(A) tail from degradation.

Drosophila melanogaster (taxid: 7227)

>sp|Q28ZX3|PABP2_DROPS Polyadenylate-binding protein 2 OS=Drosophila pseudoobscura pseudoobscura GN=Pabp2 PE=3 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/67 (59%), Positives = 49/67 (73%), Gaps = 5/67 (7%)

Query: 5   RDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTN---RGGPRGRGRGRVSRGAAMYGG 61
           ++ V+TA+AM+E+LFRGRQIKV  KRTNRPG+STTN   RG  RGRG  R SR A  +  
Sbjct: 147 KEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRG-ARASR-ACCHST 204

Query: 62  YRPVRRA 68
           +R  RRA
Sbjct: 205 FRGARRA 211

Involved in the 3'-end formation of mRNA precursors (pre-mRNA) by the addition of a poly(A) tail of 200-250 nt to the upstream cleavage product. Stimulates poly(A) polymerase (PAPOLA) conferring processivity on the poly(A) tail elongation reaction and controls also the poly(A) tail length. Increases the affinity of poly(A) polymerase for RNA. Binds to poly(A) and to poly(G) with high affinity. May protect the poly(A) tail from degradation.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q6NVP7|PABP2_XENTR Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 30/42 (71%), Positives = 38/42 (90%)

Query: 3   AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRGGP 44
           + ++ V+T++A+DESLFRGRQIKV PKRTNRPGISTT+RG P
Sbjct: 212 SDKESVRTSLALDESLFRGRQIKVVPKRTNRPGISTTDRGFP 253

Involved in the 3'-end formation of mRNA precursors (pre-mRNA) by the addition of a poly(A) tail of 200-250 nt to the upstream cleavage product. Stimulates poly(A) polymerase (PAPOLA) conferring processivity on the poly(A) tail elongation reaction and controls also the poly(A) tail length. Increases the affinity of poly(A) polymerase for RNA. Binds to poly(A) and to poly(G) with high affinity. May protect the poly(A) tail from degradation.

Xenopus tropicalis (taxid: 8364)

>sp|Q7ZXB8|PAB2B_XENLA Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-b PE=2 SV=1

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 30/42 (71%), Positives = 38/42 (90%)

Query: 3   AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRGGP 44
           + ++ V+T++A+DESLFRGRQIKV PKRTNRPGISTT+RG P
Sbjct: 211 SDKESVRTSLALDESLFRGRQIKVVPKRTNRPGISTTDRGFP 252

Involved in the 3'-end formation of mRNA precursors (pre-mRNA) by the addition of a poly(A) tail of 200-250 nt to the upstream cleavage product. Stimulates poly(A) polymerase (PAPOLA) conferring processivity on the poly(A) tail elongation reaction and controls also the poly(A) tail length. Increases the affinity of poly(A) polymerase for RNA. Binds to poly(A) and to poly(G) with high affinity. May protect the poly(A) tail from degradation.

Xenopus laevis (taxid: 8355)

>sp|Q9DDY9|PAB2A_XENLA Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a PE=2 SV=1

 Score = 66.6 bits (161), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 30/42 (71%), Positives = 37/42 (88%)

Query: 3   AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRGGP 44
             ++ V+T++A+DESLFRGRQIKV PKRTNRPGISTT+RG P
Sbjct: 212 CDKESVRTSLALDESLFRGRQIKVVPKRTNRPGISTTDRGFP 253

Involved in the 3'-end formation of mRNA precursors (pre-mRNA) by the addition of a poly(A) tail of 200-250 nt to the upstream cleavage product. Stimulates poly(A) polymerase (PAPOLA) conferring processivity on the poly(A) tail elongation reaction and controls also the poly(A) tail length. Increases the affinity of poly(A) polymerase for RNA. Binds to poly(A) and to poly(G) with high affinity. May protect the poly(A) tail from degradation.

Xenopus laevis (taxid: 8355)

>sp|A6NDY0|EPAB2_HUMAN Embryonic polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1L PE=2 SV=1

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/49 (61%), Positives = 36/49 (73%)

Query: 3   AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRGGPRGRGRGR 51
           A +  VQ A+ +D+SLFRGR IKV PKRTN PGIS+T+RGG RG    R
Sbjct: 196 ATKGSVQAAVELDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGHPGSR 244

Binds the poly(A) tail of mRNA.

Homo sapiens (taxid: 9606)

>sp|B0BNE4|EPAB2_RAT Embryonic polyadenylate-binding protein 2 OS=Rattus norvegicus GN=Pabpn1l PE=2 SV=1

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/51 (56%), Positives = 35/51 (68%)

Query: 3   AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRGGPRGRGRGRVS 53
           A +  VQ A+ +DES FRGR IKV PKRTN PGIS+T+RGG R     R +
Sbjct: 188 ASKSSVQAAVRLDESTFRGRVIKVLPKRTNFPGISSTDRGGLRTHSSSRAA 238

Binds the poly(A) tail of mRNA.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
66512323	228	PREDICTED: polyadenylate-binding protein	0.942	0.285	0.694	7e-16
380018099	228	PREDICTED: polyadenylate-binding protein	0.942	0.285	0.694	7e-16
270010566	225	hypothetical protein TcasGA2_TC009984 [T	0.942	0.288	0.720	1e-15
326518878	246	predicted protein [Hordeum vulgare subsp	0.971	0.272	0.702	1e-15
193678811	246	PREDICTED: polyadenylate-binding protein	0.971	0.272	0.702	1e-15
383855268	228	PREDICTED: polyadenylate-binding protein	0.942	0.285	0.694	2e-15
340716338	228	PREDICTED: polyadenylate-binding protein	0.942	0.285	0.680	2e-15
328725437	329	PREDICTED: polyadenylate-binding protein	0.971	0.203	0.702	2e-15
332374616	228	unknown [Dendroctonus ponderosae]	0.913	0.276	0.746	3e-15
332026434	228	Polyadenylate-binding protein 2 [Acromyr	0.942	0.285	0.680	6e-15

>gi|66512323|ref|XP_393066.2| PREDICTED: polyadenylate-binding protein 2 [Apis mellifera]

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/72 (69%), Positives = 56/72 (77%), Gaps = 7/72 (9%)

Query: 3   AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRG-----GPRGRGRGRVSRGAA 57
           A+RD VQTAMAMDES+FRGRQIKV PKRTNRPG+S TNRG     G RG  RG + RG+A
Sbjct: 149 AERDSVQTAMAMDESMFRGRQIKVMPKRTNRPGLSVTNRGPRGTRGYRGIARG-IIRGSA 207

Query: 58  MYGGYRPVRRAR 69
            Y GYRP+RR R
Sbjct: 208 -YFGYRPIRRPR 218

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018099|ref|XP_003692973.1| PREDICTED: polyadenylate-binding protein 2-like [Apis florea]

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/72 (69%), Positives = 56/72 (77%), Gaps = 7/72 (9%)

Query: 3   AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRG-----GPRGRGRGRVSRGAA 57
           A+RD VQTAMAMDES+FRGRQIKV PKRTNRPG+S TNRG     G RG  RG + RG+A
Sbjct: 149 AERDSVQTAMAMDESMFRGRQIKVMPKRTNRPGLSVTNRGPRGTRGYRGIARG-IIRGSA 207

Query: 58  MYGGYRPVRRAR 69
            Y GYRP+RR R
Sbjct: 208 -YFGYRPIRRPR 218

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270010566|gb|EFA07014.1| hypothetical protein TcasGA2_TC009984 [Tribolium castaneum]

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/68 (72%), Positives = 52/68 (76%), Gaps = 3/68 (4%)

Query: 4   KRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRGGPRGRGRGRVSRGA--AMYGG 61
            RD VQTAMAMDESLFRGR IKV PKRTNRPG+STTNR  PRGRG  R +RG     Y G
Sbjct: 148 DRDSVQTAMAMDESLFRGRPIKVMPKRTNRPGLSTTNR-PPRGRGAFRGARGVGRGFYAG 206

Query: 62  YRPVRRAR 69
           YRP+RR R
Sbjct: 207 YRPMRRPR 214

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|326518878|dbj|BAJ92600.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/74 (70%), Positives = 55/74 (74%), Gaps = 7/74 (9%)

Query: 3   AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRG-GPRGRG--RGR-VSRGAA- 57
           A  D V TAMAMD+SLFRGRQIKVNPKRTN+PGISTTNR    RGR   RGR +SRG A 
Sbjct: 161 ADMDSVNTAMAMDDSLFRGRQIKVNPKRTNKPGISTTNRPVASRGRAMFRGRPMSRGGAQ 220

Query: 58  --MYGGYRPVRRAR 69
              YGGYRP RR R
Sbjct: 221 SSFYGGYRPSRRPR 234

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|193678811|ref|XP_001952437.1| PREDICTED: polyadenylate-binding protein 2-like isoform 1 [Acyrthosiphon pisum]

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/74 (70%), Positives = 55/74 (74%), Gaps = 7/74 (9%)

Query: 3   AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRG-GPRGRG--RGR-VSRGAA- 57
           A  D V TAMAMD+SLFRGRQIKVNPKRTN+PGISTTNR    RGR   RGR +SRG A 
Sbjct: 161 ADMDSVNTAMAMDDSLFRGRQIKVNPKRTNKPGISTTNRPVASRGRAMFRGRPMSRGGAQ 220

Query: 58  --MYGGYRPVRRAR 69
              YGGYRP RR R
Sbjct: 221 SSFYGGYRPSRRPR 234

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855268|ref|XP_003703137.1| PREDICTED: polyadenylate-binding protein 2-like [Megachile rotundata]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/72 (69%), Positives = 55/72 (76%), Gaps = 7/72 (9%)

Query: 3   AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRG-----GPRGRGRGRVSRGAA 57
           A+RD VQTAMAMDES+FRGRQIKV PKRTNRPG+S TNRG     G RG  RG + RG+A
Sbjct: 149 AERDSVQTAMAMDESMFRGRQIKVMPKRTNRPGLSVTNRGPRGTRGYRGVARG-IIRGSA 207

Query: 58  MYGGYRPVRRAR 69
            Y GYRP RR R
Sbjct: 208 -YFGYRPTRRPR 218

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716338|ref|XP_003396656.1| PREDICTED: polyadenylate-binding protein 2-like [Bombus terrestris] gi|350406230|ref|XP_003487700.1| PREDICTED: polyadenylate-binding protein 2-like [Bombus impatiens]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/72 (68%), Positives = 56/72 (77%), Gaps = 7/72 (9%)

Query: 3   AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRG-----GPRGRGRGRVSRGAA 57
           A+RD VQTAMA+DES+FRGRQIKV PKRTNRPG+S TNRG     G RG  RG + RG+A
Sbjct: 149 AERDSVQTAMAIDESMFRGRQIKVMPKRTNRPGLSVTNRGPRGARGYRGIARG-IIRGSA 207

Query: 58  MYGGYRPVRRAR 69
            Y GYRP+RR R
Sbjct: 208 -YFGYRPIRRPR 218

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328725437|ref|XP_003248478.1| PREDICTED: polyadenylate-binding protein 2-like isoform 2 [Acyrthosiphon pisum]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/74 (70%), Positives = 55/74 (74%), Gaps = 7/74 (9%)

Query: 3   AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRG-GPRGRG--RGR-VSRGAA- 57
           A  D V TAMAMD+SLFRGRQIKVNPKRTN+PGISTTNR    RGR   RGR +SRG A 
Sbjct: 244 ADMDSVNTAMAMDDSLFRGRQIKVNPKRTNKPGISTTNRPVASRGRAMFRGRPMSRGGAQ 303

Query: 58  --MYGGYRPVRRAR 69
              YGGYRP RR R
Sbjct: 304 SSFYGGYRPSRRPR 317

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332374616|gb|AEE62449.1| unknown [Dendroctonus ponderosae]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/71 (74%), Positives = 55/71 (77%), Gaps = 8/71 (11%)

Query: 4   KRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRGGPRGRG----RGR-VSRGAAM 58
            RD VQTAMAMDESLFRGRQIKV PKRTNRPGISTTNR  PRGRG    RGR  SRG   
Sbjct: 150 DRDSVQTAMAMDESLFRGRQIKVMPKRTNRPGISTTNR-PPRGRGVSTFRGRGASRGG-- 206

Query: 59  YGGYRPVRRAR 69
           + GYRP+RR R
Sbjct: 207 FYGYRPMRRPR 217

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026434|gb|EGI66562.1| Polyadenylate-binding protein 2 [Acromyrmex echinatior]

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/72 (68%), Positives = 54/72 (75%), Gaps = 7/72 (9%)

Query: 3   AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRG-----GPRGRGRGRVSRGAA 57
           A+RD VQTAMAMDES+FRGRQIKV PKRTN+PG S TNRG     G RG  RG + RG+A
Sbjct: 149 AERDSVQTAMAMDESMFRGRQIKVMPKRTNKPGFSMTNRGPRGARGYRGMARG-IIRGSA 207

Query: 58  MYGGYRPVRRAR 69
            Y GYRP RR R
Sbjct: 208 -YFGYRPTRRPR 218

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
ZFIN|ZDB-GENE-040426-2401	284	pabpn1 "poly(A) binding protei	0.971	0.235	0.521	4.7e-11
UNIPROTKB|Q7ZXB8	295	pabpn1-b "Polyadenylate-bindin	0.942	0.220	0.485	9.1e-11
UNIPROTKB|Q6NVP7	296	pabpn1 "Polyadenylate-binding	0.942	0.219	0.485	9.2e-11
UNIPROTKB|Q9DDY9	296	pabpn1-a "Polyadenylate-bindin	0.942	0.219	0.485	9.2e-11
UNIPROTKB|B4DEH8	168	PABPN1 "cDNA FLJ57714, highly	0.521	0.214	0.75	4.1e-10
UNIPROTKB|G3V4T2	178	PABPN1 "Polyadenylate-binding	0.521	0.202	0.75	4.1e-10
UNIPROTKB|H0YJH9	96	PABPN1 "Polyadenylate-binding	0.521	0.375	0.75	4.1e-10
UNIPROTKB|F1MTN4	275	PABPN1 "Polyadenylate-binding	0.521	0.130	0.75	9.6e-10
UNIPROTKB|Q28ZX3	225	Pabp2 "Polyadenylate-binding p	0.927	0.284	0.476	1.1e-09
MGI|MGI:1859158	302	Pabpn1 "poly(A) binding protei	0.521	0.119	0.75	1.3e-09

ZFIN|ZDB-GENE-040426-2401 pabpn1 "poly(A) binding protein, nuclear 1" [Danio rerio (taxid:7955)]

 Score = 156 (60.0 bits), Expect = 4.7e-11, P = 4.7e-11
 Identities = 37/71 (52%), Positives = 42/71 (59%)

Query:     3 AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNXX---XXXXXXXXXXXXXAAMY 59
             A ++ V+TAMA+DESLFRGRQIKV  KRTNRPGISTT+                  A  Y
Sbjct:   147 ADKESVRTAMALDESLFRGRQIKVGAKRTNRPGISTTDRGFPRARFRSRGGNFSSRARYY 206

Query:    60 GGYRPVR-RAR 69
              GY P R R R
Sbjct:   207 SGYTPPRGRGR 217

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q7ZXB8 pabpn1-b "Polyadenylate-binding protein 2-B" [Xenopus laevis (taxid:8355)]

 Score = 154 (59.3 bits), Expect = 9.1e-11, P = 9.1e-11
 Identities = 33/68 (48%), Positives = 41/68 (60%)

Query:     5 RDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNXX---XXXXXXXXXXXXXAAMYGG 61
             ++ V+T++A+DESLFRGRQIKV PKRTNRPGISTT+                  +  Y G
Sbjct:   213 KESVRTSLALDESLFRGRQIKVVPKRTNRPGISTTDRGFPRARYRARASSYSSRSRFYSG 272

Query:    62 YRPVRRAR 69
             Y P  R R
Sbjct:   273 YTPRPRGR 280

GO:0003723 "RNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006378 "mRNA polyadenylation" evidence=ISS

GO:0008143 "poly(A) RNA binding" evidence=ISS

UNIPROTKB|Q6NVP7 pabpn1 "Polyadenylate-binding protein 2" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 154 (59.3 bits), Expect = 9.2e-11, P = 9.2e-11
 Identities = 33/68 (48%), Positives = 41/68 (60%)

Query:     5 RDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNXX---XXXXXXXXXXXXXAAMYGG 61
             ++ V+T++A+DESLFRGRQIKV PKRTNRPGISTT+                  +  Y G
Sbjct:   214 KESVRTSLALDESLFRGRQIKVVPKRTNRPGISTTDRGFPRARYRARASSYSSRSRFYSG 273

Query:    62 YRPVRRAR 69
             Y P  R R
Sbjct:   274 YTPRPRGR 281

GO:0003723 "RNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006378 "mRNA polyadenylation" evidence=ISS

GO:0008143 "poly(A) RNA binding" evidence=ISS

UNIPROTKB|Q9DDY9 pabpn1-a "Polyadenylate-binding protein 2-A" [Xenopus laevis (taxid:8355)]

 Score = 154 (59.3 bits), Expect = 9.2e-11, P = 9.2e-11
 Identities = 33/68 (48%), Positives = 41/68 (60%)

Query:     5 RDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNXX---XXXXXXXXXXXXXAAMYGG 61
             ++ V+T++A+DESLFRGRQIKV PKRTNRPGISTT+                  +  Y G
Sbjct:   214 KESVRTSLALDESLFRGRQIKVVPKRTNRPGISTTDRGFPRARYRARASSYSSRSRFYSG 273

Query:    62 YRPVRRAR 69
             Y P  R R
Sbjct:   274 YTPRPRGR 281

GO:0003723 "RNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISS

GO:0006378 "mRNA polyadenylation" evidence=ISS

GO:0008143 "poly(A) RNA binding" evidence=ISS

UNIPROTKB|B4DEH8 PABPN1 "cDNA FLJ57714, highly similar to Poly(A)-binding protein 2" [Homo sapiens (taxid:9606)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 27/36 (75%), Positives = 34/36 (94%)

Query:     5 RDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTN 40
             ++ V+T++A+DESLFRGRQIKV PKRTNRPGISTT+
Sbjct:    95 KESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTD 130

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|G3V4T2 PABPN1 "Polyadenylate-binding protein 2" [Homo sapiens (taxid:9606)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 27/36 (75%), Positives = 34/36 (94%)

Query:     5 RDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTN 40
             ++ V+T++A+DESLFRGRQIKV PKRTNRPGISTT+
Sbjct:    95 KESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTD 130

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|H0YJH9 PABPN1 "Polyadenylate-binding protein 2" [Homo sapiens (taxid:9606)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 27/36 (75%), Positives = 34/36 (94%)

Query:     5 RDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTN 40
             ++ V+T++A+DESLFRGRQIKV PKRTNRPGISTT+
Sbjct:    23 KESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTD 58

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1MTN4 PABPN1 "Polyadenylate-binding protein 2" [Bos taurus (taxid:9913)]

 Score = 144 (55.7 bits), Expect = 9.6e-10, P = 9.6e-10
 Identities = 27/36 (75%), Positives = 34/36 (94%)

Query:     5 RDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTN 40
             ++ V+T++A+DESLFRGRQIKV PKRTNRPGISTT+
Sbjct:   192 KESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTD 227

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q28ZX3 Pabp2 "Polyadenylate-binding protein 2" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 31/65 (47%), Positives = 40/65 (61%)

Query:     5 RDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNXXXXXXXXXXXXXXX-AAMYGGYR 63
             ++ V+TA+AM+E+LFRGRQIKV  KRTNRPG+STTN                A  +  +R
Sbjct:   147 KEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARASRACCHSTFR 206

Query:    64 PVRRA 68
               RRA
Sbjct:   207 GARRA 211

GO:0003723 "RNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006378 "mRNA polyadenylation" evidence=ISS

GO:0008143 "poly(A) RNA binding" evidence=ISS

GO:0042802 "identical protein binding" evidence=ISS

MGI|MGI:1859158 Pabpn1 "poly(A) binding protein, nuclear 1" [Mus musculus (taxid:10090)]

 Score = 144 (55.7 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 27/36 (75%), Positives = 34/36 (94%)

Query:     5 RDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTN 40
             ++ V+T++A+DESLFRGRQIKV PKRTNRPGISTT+
Sbjct:   219 KESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTD 254

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0006378 "mRNA polyadenylation" evidence=TAS

GO:0006397 "mRNA processing" evidence=IEA

GO:0008143 "poly(A) RNA binding" evidence=TAS

GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8CCS6	PABP2_MOUSE	No assigned EC number	0.6666	0.7391	0.1688	yes	N/A
Q7KNF2	PABP2_DROME	No assigned EC number	0.6406	0.8550	0.2633	yes	N/A
Q28165	PABP2_BOVIN	No assigned EC number	0.6666	0.7391	0.1666	yes	N/A
Q6NVP7	PABP2_XENTR	No assigned EC number	0.7142	0.6086	0.1418	yes	N/A
Q28ZX3	PABP2_DROPS	No assigned EC number	0.5970	0.8985	0.2755	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	69
cd12550	76	cd12550, RRM_II_PABPN1, RNA recognition motif in t	9e-12
cd12551	77	cd12551, RRM_II_PABPN1L, RNA recognition motif in	9e-09
cd12306	73	cd12306, RRM_II_PABPs, RNA recognition motif in ty	3e-06

>gnl|CDD|240994 cd12550, RRM_II_PABPN1, RNA recognition motif in type II polyadenylate-binding protein 2 (PABP-2) and similar proteins

 Score = 54.0 bits (130), Expect = 9e-12
 Identities = 19/28 (67%), Positives = 25/28 (89%)

Query: 3  AKRDEVQTAMAMDESLFRGRQIKVNPKR 30
          + ++ V+TA+A+DESLFRGRQIKV PKR
Sbjct: 49 SDKESVRTALALDESLFRGRQIKVMPKR 76

This subgroup corresponds to the RRM of PABP-2, also termed poly(A)-binding protein 2, or nuclear poly(A)-binding protein 1 (PABPN1), or poly(A)-binding protein II (PABII), which is a ubiquitously expressed type II nuclear poly(A)-binding protein that directs the elongation of mRNA poly(A) tails during pre-mRNA processing. Although PABP-2 binds poly(A) with high affinity and specificity as type I poly(A)-binding proteins, it contains only one highly conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), which is responsible for the poly(A) binding. In addition, PABP-2 possesses an acidic N-terminal domain that is essential for the stimulation of PAP, and an arginine-rich C-terminal domain. . Length = 76

>gnl|CDD|240995 cd12551, RRM_II_PABPN1L, RNA recognition motif in vertebrate type II embryonic polyadenylate-binding protein 2 (ePABP-2)

 Score = 46.4 bits (110), Expect = 9e-09
 Identities = 20/29 (68%), Positives = 23/29 (79%)

Query: 3  AKRDEVQTAMAMDESLFRGRQIKVNPKRT 31
          A RD V+ A+A+DES FRGR IKV PKRT
Sbjct: 49 ATRDSVEAAVALDESSFRGRVIKVLPKRT 77

This subgroup corresponds to the RRM of ePABP-2, also termed embryonic poly(A)-binding protein 2, or poly(A)-binding protein nuclear-like 1 (PABPN1L). ePABP-2 is a novel embryonic-specific cytoplasmic type II poly(A)-binding protein that is expressed during the early stages of vertebrate development and in adult ovarian tissue. It may play an important role in the poly(A) metabolism of stored mRNAs during early vertebrate development. ePABP-2 shows significant sequence similarity to the ubiquitously expressed nuclear polyadenylate-binding protein 2 (PABP-2 or PABPN1). Like PABP-2, ePABP-2 contains one RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), which is responsible for the poly(A) binding. In addition, it possesses an acidic N-terminal domain predicted to form a coiled-coil and an arginine-rich C-terminal domain. . Length = 77

>gnl|CDD|240752 cd12306, RRM_II_PABPs, RNA recognition motif in type II polyadenylate-binding proteins

 Score = 39.6 bits (93), Expect = 3e-06
 Identities = 12/21 (57%), Positives = 16/21 (76%)

Query: 6  DEVQTAMAMDESLFRGRQIKV 26
            V+ A+ ++ES FRGRQIKV
Sbjct: 52 SSVENALLLNESEFRGRQIKV 72

This subfamily corresponds to the RRM of type II polyadenylate-binding proteins (PABPs), including polyadenylate-binding protein 2 (PABP-2 or PABPN1), embryonic polyadenylate-binding protein 2 (ePABP-2 or PABPN1L) and similar proteins. PABPs are highly conserved proteins that bind to the poly(A) tail present at the 3' ends of most eukaryotic mRNAs. They have been implicated in the regulation of poly(A) tail length during the polyadenylation reaction, translation initiation, mRNA stabilization by influencing the rate of deadenylation and inhibition of mRNA decapping. ePABP-2 is predominantly located in the cytoplasm and PABP-2 is located in the nucleus. In contrast to the type I PABPs containing four copies of RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), the type II PABPs contains a single highly-conserved RRM. This subfamily also includes Saccharomyces cerevisiae RBP29 (SGN1, YIR001C) gene encoding cytoplasmic mRNA-binding protein Rbp29 that binds preferentially to poly(A). Although not essential for cell viability, Rbp29 plays a role in modulating the expression of cytoplasmic mRNA. Like other type II PABPs, Rbp29 contains one RRM only. . Length = 73

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	69
3ucg_A	89	Crystal Structure Of A Rna Binding Domain Of Hypoth		4e-09
3b4d_A	96	Crystal Structure Of Human Pabpn1 Rrm Length = 96		4e-09
2jwn_A	124	Solution Nmr Structure Of The Protease-Resistent Do		7e-09

>pdb|3UCG|A Chain A, Crystal Structure Of A Rna Binding Domain Of Hypothetical Polyadenylate-Binding Protein (Pabpn1) From Homo Sapiens At 1.95 A Resolution Length = 89

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 24/34 (70%), Positives = 31/34 (91%)
Query: 3  AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGI 36
          + ++ V+T++A+DESLFRGRQIKV PKRTNRPGI
Sbjct: 56 SDKESVRTSLALDESLFRGRQIKVIPKRTNRPGI 89

>pdb|3B4D|A Chain A, Crystal Structure Of Human Pabpn1 Rrm Length = 96

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 24/34 (70%), Positives = 31/34 (91%)
Query: 3  AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGI 36
          + ++ V+T++A+DESLFRGRQIKV PKRTNRPGI
Sbjct: 55 SDKESVRTSLALDESLFRGRQIKVIPKRTNRPGI 88

>pdb|2JWN|A Chain A, Solution Nmr Structure Of The Protease-Resistent Domain Of Xenopus Laevis Epabp2 Length = 124

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 25/38 (65%), Positives = 32/38 (84%)
Query: 3   AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTN 40
           A+R+ V  A+AMDE++FRGR IKV PKRTN PGIS+T+
Sbjct: 86  AERNSVDAAVAMDETVFRGRTIKVLPKRTNMPGISSTD 123

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	69
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	1e-11
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	1e-10
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	6e-07

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis} Length = 124

 Score = 54.3 bits (131), Expect = 1e-11
 Identities = 26/39 (66%), Positives = 33/39 (84%)

Query: 3   AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNR 41
           A+R+ V  A+AMDE++FRGR IKV PKRTN PGIS+T+R
Sbjct: 86  AERNSVDAAVAMDETVFRGRTIKVLPKRTNMPGISSTDR 124

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A Length = 89

 Score = 50.6 bits (122), Expect = 1e-10
 Identities = 24/31 (77%), Positives = 29/31 (93%)

Query: 6  DEVQTAMAMDESLFRGRQIKVNPKRTNRPGI 36
          + V+T++A+DESLFRGRQIKV PKRTNRPGI
Sbjct: 59 ESVRTSLALDESLFRGRQIKVIPKRTNRPGI 89

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114

 Score = 41.9 bits (99), Expect = 6e-07
 Identities = 7/37 (18%), Positives = 13/37 (35%)

Query: 6   DEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTTNRG 42
             V  A+ +      G  I V   +  +  +S  + G
Sbjct: 78  QSVPLAIGLTGQRLLGVPIIVQASQAEKNRLSGPSSG 114

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	69
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	98.4
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	98.26
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	98.11
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	97.81
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	97.72
2dnr_A	91	Synaptojanin-1; RRM domain, RBD, structural genomi	97.67
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	97.55
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	97.52
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	97.51
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	97.47
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	97.47
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	97.46
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	97.45
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	97.41
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	97.41
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	97.38
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	97.37
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	97.27
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	97.25
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	97.24
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	97.24
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	97.23
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	97.22
1ufw_A	95	Synaptojanin 2; RNP domain, structural genomics, r	97.19
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	97.18
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	97.18
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	97.17
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	97.17
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	97.17
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	97.16
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	97.16
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	97.16
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	97.15
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	97.15
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	97.15
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	97.15
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	97.14
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	97.13
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	97.12
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	97.1
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	97.09
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	97.08
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	97.07
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	97.06
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	97.06
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	97.06
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	97.05
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	97.05
1x5p_A	97	Negative elongation factor E; structure genomics,	97.04
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	97.03
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	97.03
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	97.03
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	97.02
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	97.01
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	97.01
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	97.0
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	97.0
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	97.0
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	96.99
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	96.99
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	96.98
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	96.97
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	96.96
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	96.96
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	96.96
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	96.95
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	96.94
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	96.94
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	96.93
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	96.9
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	96.89
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	96.88
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	96.87
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	96.86
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	96.85
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	96.84
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	96.83
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	96.82
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	96.81
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	96.81
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	96.8
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	96.8
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	96.78
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	96.77
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	96.75
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	96.75
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	96.74
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	96.74
2div_A	99	TRNA selenocysteine associated protein; structural	96.74
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	96.73
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	96.72
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	96.7
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	96.7
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	96.68
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	96.67
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	96.67
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	96.67
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	96.66
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	96.66
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	96.65
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	96.65
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	96.65
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	96.65
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	96.64
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	96.64
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	96.63
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	96.63
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	96.6
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	96.55
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	96.55
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	96.54
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	96.52
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	96.52
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	96.51
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	96.5
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	96.5
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	95.47
2wbr_A	89	GW182, gawky, LD47780P; DNA-binding protein, RRM,	96.39
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	96.39
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	96.38
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	96.37
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	96.37
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	96.37
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	96.36
1x4e_A	85	RNA binding motif, single-stranded interacting pro	96.34
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	96.33
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	96.32
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	96.32
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	96.32
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	96.31
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	96.28
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	96.26
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	96.26
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	96.25
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	96.22
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	96.21
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	96.18
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	96.17
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	96.15
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	96.13
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	96.12
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	96.12
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	96.11
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	96.05
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	96.04
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens}	95.99
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	95.98
2dis_A	109	Unnamed protein product; structural genomics, RRM	95.95
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	95.94
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	95.92
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	95.8
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	95.72
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	95.58
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	95.48
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	95.46
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	95.46
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	95.45
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	95.44
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	95.39
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	95.33
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	95.3
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	95.29
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	95.28
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	95.27
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	95.15
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	95.1
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	95.08
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	95.08
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	95.07
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	95.03
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	94.96
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	94.85
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	94.82
2m2b_A	131	RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio	94.82
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	94.74
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	94.71
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	94.6
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	94.59
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	94.46
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	94.35
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	94.27
1x5o_A	114	RNA binding motif, single-stranded interacting pro	94.2
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	94.19
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	94.11
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	94.05
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	93.84
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	93.72
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	93.71
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	93.67
2l9w_A	117	U4/U6 snRNA-associated-splicing factor PRP24; RRM,	93.53
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	93.36
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	93.29
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	93.27
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	92.87
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	92.73
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	92.54
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	91.86
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	91.81
2j8a_A	136	Histone-lysine N-methyltransferase, H3 lysine-4 sp	88.06
2d9o_A	100	DNAJ (HSP40) homolog, subfamily C, member 17; RRM	86.59
2dnl_A	114	Cytoplasmic polyadenylation element binding protei	86.32
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	86.01
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	84.96
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	83.5

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=98.40  E-value=2.3e-07  Score=53.42  Aligned_cols=34  Identities=71%  Similarity=1.140  Sum_probs=31.3

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCccCCCCC
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGI   36 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRtN~PG~   36 (69)
                      ++++++++||+||+.+|.|+.|+|.+++++.|||
T Consensus        56 ~~~~~a~~a~~~~g~~~~g~~l~V~~a~~~~pg~   89 (89)
T 3ucg_A           56 SDKESVRTSLALDESLFRGRQIKVIPKRTNRPGI   89 (89)
T ss_dssp             SSTHHHHHHGGGTTCEETTEECEEEETTTTSCC-
T ss_pred             CCHHHHHHHHhcCCCEECCcEEEEEEccCCCCCC
Confidence            4678999999999999999999999999999986

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=98.26  E-value=1.2e-06  Score=53.57  Aligned_cols=37  Identities=68%  Similarity=1.017  Sum_probs=34.2

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCccCCCCCCCC
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRPGISTT   39 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRtN~PG~~~~   39 (69)
                      ++++++++||+||+.+|.|+.|+|..++++.|+++++
T Consensus        86 ~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~~~~~~  122 (124)
T 2jwn_A           86 AERNSVDAAVAMDETVFRGRTIKVLPKRTNMPGISST  122 (124)
T ss_dssp             SSHHHHHHHHTTTTCEETTEECEEEESSCCCSSCCCS
T ss_pred             CCHHHHHHHHhcCCCeECCeEEEEEECCCCCCCCCCC
Confidence            5789999999999999999999999999999998854

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=98.11  E-value=2.7e-06  Score=54.03  Aligned_cols=33  Identities=18%  Similarity=0.301  Sum_probs=29.0

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRPG   35 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~PG   35 (69)
                      +++++|++||+ ||+.+|.|+.|+|...+...+.
T Consensus        89 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~  122 (156)
T 1h2v_Z           89 YSRADAENAMRYINGTRLDDRIIRTDWDAGFKEG  122 (156)
T ss_dssp             SSHHHHHHHHHHTTTSEETTEECEEEEESCCCTT
T ss_pred             CCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCc
Confidence            57899999996 9999999999999998876554

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.81  E-value=5.2e-05  Score=45.60  Aligned_cols=33  Identities=21%  Similarity=0.490  Sum_probs=28.7

Q ss_pred             cCHHHHHHHHH-ccCCeeeC-----ceeEEeeCccCCCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRG-----RQIKVNPKRTNRPG   35 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frG-----R~IkV~~KRtN~PG   35 (69)
                      ++++++++||+ ||+.+|.|     +.|+|......-+.
T Consensus        58 ~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~~~   96 (108)
T 1x4c_A           58 VRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSPS   96 (108)
T ss_dssp             SSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCCSCC
T ss_pred             CCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCCCCC
Confidence            57899999996 99999999     99999988775544

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A

Probab=97.72  E-value=4e-05  Score=46.93  Aligned_cols=34  Identities=21%  Similarity=0.514  Sum_probs=26.0

Q ss_pred             cCHHHHHHHHH-ccCCeeeCce-----eEEeeCccCCCCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQ-----IKVNPKRTNRPGI   36 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~-----IkV~~KRtN~PG~   36 (69)
                      ++++++++||+ ||+++|.|++     |+|...+.+-|..
T Consensus        59 ~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~~~~~~   98 (115)
T 3beg_B           59 VRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSPSY   98 (115)
T ss_dssp             SSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC----CC
T ss_pred             CCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCCCCCCC
Confidence            57899999996 9999999999     8888777665543

>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.67  E-value=3.6e-05  Score=48.46  Aligned_cols=32  Identities=13%  Similarity=0.255  Sum_probs=29.6

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCccCCC
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKRTNRP   34 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRtN~P   34 (69)
                      .|.+++.+||+||+..+.||.|||..|.++-+
T Consensus        57 ~d~~sAlaAi~mnG~~v~Gr~LkV~lkt~dW~   88 (91)
T 2dnr_A           57 LEGSSALNVLSLNGKELLNRTITIALKSPSGP   88 (91)
T ss_dssp             SSHHHHHHGGGGTTCEETTEEEEEEECCCSSC
T ss_pred             CChHHHHHHHhcCCeEeCCeEEEEEeCCCCcc
Confidence            47899999999999999999999999998864

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=97.55  E-value=6.7e-05  Score=45.73  Aligned_cols=33  Identities=24%  Similarity=0.255  Sum_probs=28.2

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRPG   35 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~PG   35 (69)
                      +++++|++||+ ||+.+|.|+.|+|.......+.
T Consensus        72 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~  105 (126)
T 3ex7_B           72 ETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPP  105 (126)
T ss_dssp             SSHHHHHHHHHHHTTCBSSSSBCEEEESEESSSC
T ss_pred             CCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCCC
Confidence            57899999995 9999999999999988765543

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=97.52  E-value=0.00025  Score=43.83  Aligned_cols=30  Identities=17%  Similarity=0.215  Sum_probs=26.8

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN   32 (69)
                      +++++|++||+ ||+.+|.|+.|+|....+.
T Consensus        92 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~  122 (139)
T 1u6f_A           92 QSGSSAQQAIAGLNGFNILNKRLKVALAASG  122 (139)
T ss_dssp             SSHHHHHHHHHHTTTEECSSCEEEEEESSCC
T ss_pred             CCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence            57899999996 9999999999999987754

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=97.51  E-value=0.00032  Score=41.49  Aligned_cols=32  Identities=22%  Similarity=0.315  Sum_probs=27.9

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRP   34 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~P   34 (69)
                      ++++++++||+ ||+.+|.|+.|+|........
T Consensus        53 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~   85 (103)
T 2dgu_A           53 DERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ   85 (103)
T ss_dssp             SSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred             CCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence            57899999996 999999999999998876543

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.47  E-value=0.00022  Score=42.11  Aligned_cols=31  Identities=19%  Similarity=0.410  Sum_probs=27.4

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCccCC
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKRTNR   33 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRtN~   33 (69)
                      ++++++++||+||+.+|.|+.|+|.......
T Consensus        64 ~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~   94 (103)
T 2dng_A           64 DEVDSLKEALTYDGALLGDRSLRVDIAEGRK   94 (103)
T ss_dssp             SSHHHHHHHGGGTTCEETTEECEEEECCCCC
T ss_pred             CCHHHHHHHHhhCCCeECCeEEEEEEecCCC
Confidence            5789999999999999999999999876543

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=97.47  E-value=6.3e-05  Score=43.79  Aligned_cols=32  Identities=13%  Similarity=0.201  Sum_probs=24.3

Q ss_pred             cCHHHHHHHH-HccCCeeeCceeEEeeCccCCC
Q psy13491          3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTNRP   34 (69)
Q Consensus         3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRtN~P   34 (69)
                      ++++++++|| +||+.+|.|++|+|.......|
T Consensus        53 ~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~~   85 (90)
T 3p5t_L           53 GSEASSKKLMDLLPKRELHGQNPVVTPSNKLEH   85 (90)
T ss_dssp             -CHHHHHHHHHHGGGSCSSSCCCEECCC-----
T ss_pred             CCHHHHHHHHHHcCCCeeCCEEEEEEECCCCcc
Confidence            5789999999 5999999999999987776544

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=97.46  E-value=0.00033  Score=52.40  Aligned_cols=30  Identities=20%  Similarity=0.376  Sum_probs=26.8

Q ss_pred             cCHHHHHHHH-HccCCeeeCceeEEeeCccC
Q psy13491          3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRtN   32 (69)
                      +++++|++|| +||+.+|.|++|+|..+...
T Consensus       152 ~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~  182 (437)
T 3pgw_S          152 EHERDMHSAYKHADGKKIDGRRVLVDVERGR  182 (437)
T ss_pred             ccHHHHHHHHHHcCCCEECCEEEEEEEeCCC
Confidence            5789999999 59999999999999988764

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=97.45  E-value=0.00012  Score=44.05  Aligned_cols=29  Identities=17%  Similarity=0.327  Sum_probs=26.1

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt   31 (69)
                      +++++|++||+ ||+.+|.|++|+|..++.
T Consensus        69 ~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP   98 (99)
T 4fxv_A           69 VTAKDAERAINTLNGLRLQSKTIKVSYARP   98 (99)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence            57899999995 999999999999998764

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=97.41  E-value=0.00016  Score=41.06  Aligned_cols=31  Identities=23%  Similarity=0.341  Sum_probs=27.1

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNR   33 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~   33 (69)
                      ++++++++|++ ||+.+|.|+.|+|...+...
T Consensus        55 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~   86 (88)
T 4a8x_A           55 ENPDEAEKALKHMDGGQIDGQEITATAVLAPW   86 (88)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEEECCCC
T ss_pred             ecHHHHHHHHHHcCCCeECCeEEEEEECCCCC
Confidence            57899999996 99999999999999876544

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=97.41  E-value=0.00013  Score=45.65  Aligned_cols=29  Identities=21%  Similarity=0.373  Sum_probs=25.7

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt   31 (69)
                      ++++++++||+ ||+++|.|++|+|.....
T Consensus        75 ~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~  104 (111)
T 2jvr_A           75 PSEEILVEALERLNNIEFRGSVITVERDDN  104 (111)
T ss_dssp             SSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred             CCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence            57899999995 999999999999987653

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.38  E-value=0.00028  Score=40.73  Aligned_cols=33  Identities=15%  Similarity=0.292  Sum_probs=28.4

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRPG   35 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~PG   35 (69)
                      ++++++++||+ ||+.+|.|+.|+|.......++
T Consensus        55 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~   88 (95)
T 2dnz_A           55 SDSECARRALEQLNGFELAGRPMRVGHVTERLDG   88 (95)
T ss_dssp             SCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCCC
T ss_pred             CCHHHHHHHHHHhCCCeeCCcEEEEEEcccccCC
Confidence            57899999996 9999999999999988765543

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=97.37  E-value=0.00045  Score=42.30  Aligned_cols=29  Identities=21%  Similarity=0.401  Sum_probs=25.9

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt   31 (69)
                      +++++|++||+ ||+.+|.|+.|+|.....
T Consensus        56 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~   85 (116)
T 2fy1_A           56 ENPADAKNAAKDMNGKSLHGKAIKVEQAKK   85 (116)
T ss_dssp             SSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence            57899999995 999999999999987764

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.27  E-value=0.00049  Score=39.81  Aligned_cols=31  Identities=16%  Similarity=0.443  Sum_probs=27.1

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNR   33 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~   33 (69)
                      ++++++++||+ ||+.+|.|+.|+|.......
T Consensus        52 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~   83 (92)
T 2dgt_A           52 ERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL   83 (92)
T ss_dssp             SCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred             CCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence            57899999995 99999999999999887654

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.25  E-value=0.00065  Score=39.22  Aligned_cols=31  Identities=23%  Similarity=0.241  Sum_probs=27.1

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNR   33 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~   33 (69)
                      ++++++++||+ ||+.+|.|+.|+|......-
T Consensus        56 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~   87 (96)
T 1x5t_A           56 ASFDASDAAIEAMNGQYLCNRPITVSYAFKKD   87 (96)
T ss_dssp             SSHHHHHHHHHTTTTCEETTEECEEEESCCCC
T ss_pred             CCHHHHHHHHHHcCCCEECCEEEEEEEecccC
Confidence            57899999997 99999999999998876543

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.24  E-value=0.00024  Score=41.82  Aligned_cols=33  Identities=33%  Similarity=0.487  Sum_probs=28.6

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRPG   35 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~PG   35 (69)
                      ++++++++||+ ||+.+|.|+.|+|.......|.
T Consensus        63 ~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~   96 (103)
T 2dnm_A           63 HDRRDAQDAEAAMDGAELDGRELRVQVARYGRRD   96 (103)
T ss_dssp             SSSSHHHHHHHHHSSCCBTTBCCEEEECSSCCSC
T ss_pred             CCHHHHHHHHHHcCCCEECCcEEEEEECCcCCCC
Confidence            46789999996 9999999999999988876654

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=97.24  E-value=7.2e-05  Score=51.29  Aligned_cols=27  Identities=15%  Similarity=0.267  Sum_probs=24.1

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPK   29 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~K   29 (69)
                      +++++|++||+ ||+++|.|+.|+|...
T Consensus       120 ~~~~~a~~Ai~~lng~~~~Gr~l~V~~a  147 (229)
T 3q2s_C          120 GSEASSKKLMDLLPKRELHGQNPVVTPV  147 (229)
T ss_dssp             SCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred             CCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence            46789999996 9999999999999854

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.23  E-value=0.00055  Score=40.75  Aligned_cols=31  Identities=19%  Similarity=0.350  Sum_probs=27.2

Q ss_pred             cCHHHHHHHH-HccCCeeeCceeEEeeCccCC
Q psy13491          3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTNR   33 (69)
Q Consensus         3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRtN~   33 (69)
                      ++++++++|| +||+.+|.|+.|+|...+...
T Consensus        69 ~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~  100 (109)
T 1x4a_A           69 EDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGR  100 (109)
T ss_dssp             SCHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred             CCHHHHHHHHHHcCCCEECCeEEEEEEcccCC
Confidence            5789999999 599999999999999876644

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=97.22  E-value=0.00031  Score=39.65  Aligned_cols=28  Identities=32%  Similarity=0.493  Sum_probs=24.9

Q ss_pred             cCHHHHHHHH-HccCCeeeCceeEEeeCc
Q psy13491          3 AKRDEVQTAM-AMDESLFRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KR   30 (69)
                      ++++++++|| .||+.+|.|++|+|...+
T Consensus        57 ~~~~~a~~A~~~l~g~~~~g~~l~v~~ak   85 (85)
T 3mdf_A           57 ELAEDAAAAIDNMNESELFGRTIRVNLAK   85 (85)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             CCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence            5789999999 599999999999998754

>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.19  E-value=0.0002  Score=45.50  Aligned_cols=28  Identities=18%  Similarity=0.355  Sum_probs=25.5

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCc
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KR   30 (69)
                      .|.++|.+||+||+..+.||+|+|..|-
T Consensus        66 ~d~~sAl~AI~ldG~~v~Gr~L~V~~k~   93 (95)
T 1ufw_A           66 ADSHSALSVLDVDGMKVKGRAVKISGPS   93 (95)
T ss_dssp             SCSHHHHHHHHGGGSEETTEEEEEECCC
T ss_pred             cChHHHHHHHhcCCeeeCCeEEEEeccC
Confidence            4778999999999999999999998774

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.18  E-value=0.00064  Score=40.56  Aligned_cols=32  Identities=25%  Similarity=0.448  Sum_probs=27.9

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRP   34 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~P   34 (69)
                      ++++++++||+ ||+.+|.|+.|+|...+...+
T Consensus        73 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~  105 (113)
T 2cpe_A           73 EDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPP  105 (113)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEECSSCCCC
T ss_pred             CCHHHHHHHHHHcCCCccCCCEEEEEECCCCCC
Confidence            57899999996 999999999999998776544

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.18  E-value=0.00065  Score=39.92  Aligned_cols=32  Identities=13%  Similarity=0.249  Sum_probs=27.8

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRP   34 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~P   34 (69)
                      +++++|++||+ ||+.+|.|+.|+|......-+
T Consensus        63 ~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~   95 (103)
T 2d9p_A           63 SSPEEATKAVTEMNGRIVATKPLYVALAQRKEE   95 (103)
T ss_dssp             SSHHHHHHHHHHHTTCBSSSSBCEEEECSSCCC
T ss_pred             CCHHHHHHHHHHhCCCEeCCcEEEEEEeccccc
Confidence            57899999996 999999999999998776543

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.17  E-value=0.00082  Score=39.65  Aligned_cols=30  Identities=17%  Similarity=0.368  Sum_probs=26.9

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCccC
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRtN   32 (69)
                      ++++++++||+||+.+|.|+.|+|......
T Consensus        65 ~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~   94 (104)
T 1wi8_A           65 EDLDSLLSALSLNEESLGNKRIRVDVADQA   94 (104)
T ss_dssp             SSHHHHHHHHGGGTCEETTEECEEEECCCC
T ss_pred             CCHHHHHHHHhcCCCEeCCcEEEEEEccCC
Confidence            578999999999999999999999977653

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=97.17  E-value=0.00043  Score=41.38  Aligned_cols=32  Identities=13%  Similarity=0.369  Sum_probs=27.2

Q ss_pred             cCHHHHHHHH-HccCCeeeCceeEEeeCccCCC
Q psy13491          3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTNRP   34 (69)
Q Consensus         3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRtN~P   34 (69)
                      ++++++++|| +||+.+|.|+.|+|...+...+
T Consensus        70 ~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~  102 (110)
T 1wf1_A           70 SNERHARAAVLGENGRVLAGQTLDINMAGEPKP  102 (110)
T ss_dssp             SSSHHHHHHHHHHTTCEETTEECCEEESCCCCS
T ss_pred             CCHHHHHHHHHHcCCCEECCeEEEEEECCCCCC
Confidence            4778999999 5999999999999998775443

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.17  E-value=0.00036  Score=41.04  Aligned_cols=29  Identities=10%  Similarity=0.110  Sum_probs=26.0

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt   31 (69)
                      ++++++++||+ ||+.+|.|+.|+|...+.
T Consensus        60 ~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~   89 (96)
T 2dgx_A           60 ENLQDAIGAVNSLHRYKIGSKKILVSLATG   89 (96)
T ss_dssp             SSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred             CCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence            57899999996 999999999999998754

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.16  E-value=0.00058  Score=41.18  Aligned_cols=31  Identities=16%  Similarity=0.341  Sum_probs=26.9

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNR   33 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~   33 (69)
                      ++++++++||+ ||+.+|.|++|+|....+..
T Consensus        71 ~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~  102 (111)
T 2cpi_A           71 IRSEDALRAIQCVNNVVVDGRTLKASLGTTKY  102 (111)
T ss_dssp             SSHHHHHHHHHHHTTEEETTEEEEEESCCCCS
T ss_pred             CcHHHHHHHHHHhCCCEECCEEEEEEeccccc
Confidence            57899999996 99999999999998776543

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=97.16  E-value=0.00039  Score=42.65  Aligned_cols=28  Identities=7%  Similarity=0.087  Sum_probs=25.3

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KR   30 (69)
                      +++++|++||+ ||+++|.|++|+|...+
T Consensus        56 ~~~~~A~~Ai~~lng~~~~gr~i~V~~a~   84 (110)
T 3s8s_A           56 TSTRGAKETVKNLHLTSVMGNIIHAQLDI   84 (110)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred             CCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence            57899999995 99999999999998765

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.16  E-value=0.00074  Score=39.41  Aligned_cols=29  Identities=17%  Similarity=0.282  Sum_probs=26.2

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRt   31 (69)
                      ++++++++||+||+.+|.|+.|+|.....
T Consensus        60 ~~~~~a~~A~~~~~~~~~g~~l~V~~a~~   88 (99)
T 2dgs_A           60 EDEQSVDQAVNMHFHDIMGKKVEVKRAEP   88 (99)
T ss_dssp             SSHHHHHHHHHHCCCBSSSCBCEEEECCC
T ss_pred             CCHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence            57899999999999999999999987654

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.15  E-value=0.00078  Score=39.41  Aligned_cols=31  Identities=32%  Similarity=0.473  Sum_probs=27.0

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNR   33 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~   33 (69)
                      ++++++++||+ ||+.+|.|+.|+|.......
T Consensus        62 ~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~   93 (102)
T 2cqb_A           62 ELAEDAAAAIDNMNESELFGRTIRVNLAKPMR   93 (102)
T ss_dssp             SSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred             CCHHHHHHHHHHhCCCEECCcEEEEEeCCCCC
Confidence            57899999995 99999999999998876544

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.15  E-value=0.00073  Score=39.56  Aligned_cols=31  Identities=19%  Similarity=0.404  Sum_probs=27.2

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNR   33 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~   33 (69)
                      ++++++++||+ ||+.+|.|+.|+|...+..-
T Consensus        59 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~   90 (99)
T 2cpd_A           59 SNREDAVEAMKALNGKVLDGSPIEVTLAKPVD   90 (99)
T ss_dssp             SSHHHHHHHHHHHSSEEETTEEEEEECCCCCC
T ss_pred             CCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence            57899999996 99999999999999877543

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.15  E-value=0.00087  Score=38.69  Aligned_cols=30  Identities=10%  Similarity=0.206  Sum_probs=26.4

Q ss_pred             cCHHHHHHHHH-ccC-CeeeCceeEEeeCccC
Q psy13491          3 AKRDEVQTAMA-MDE-SLFRGRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~-s~frGR~IkV~~KRtN   32 (69)
                      ++++++++||+ ||+ .+|.|+.|+|......
T Consensus        52 ~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~   83 (93)
T 2cqh_A           52 PDQNWAIRAIETLSGKVELHGKIMEVDYSVSK   83 (93)
T ss_dssp             SCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred             CCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence            57899999995 999 9999999999987654

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.15  E-value=0.00075  Score=38.88  Aligned_cols=31  Identities=13%  Similarity=0.328  Sum_probs=26.9

Q ss_pred             cCHHHHHHHH-HccCCeeeCceeEEeeCccCC
Q psy13491          3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTNR   33 (69)
Q Consensus         3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRtN~   33 (69)
                      ++++++++|| .||+.+|.|++|+|.......
T Consensus        50 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~   81 (90)
T 2dnq_A           50 EDKTAAEDAIRNLHHYKLHGVNINVEASKNKS   81 (90)
T ss_dssp             SSHHHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred             CCHHHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence            5789999999 499999999999999876544

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.14  E-value=0.00085  Score=39.24  Aligned_cols=31  Identities=10%  Similarity=0.320  Sum_probs=27.0

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNR   33 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~   33 (69)
                      ++++++++||+ ||+.+|.|+.|+|......-
T Consensus        62 ~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~   93 (102)
T 2fc8_A           62 NSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG   93 (102)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred             CCHHHHHHHHHHhCCCeECCeEEEEEEecCCC
Confidence            57899999996 99999999999999876543

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A

Probab=97.13  E-value=0.00034  Score=39.65  Aligned_cols=25  Identities=36%  Similarity=0.635  Sum_probs=23.4

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEe
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVN   27 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~   27 (69)
                      ++++++++||+||+.+|.|++|+|.
T Consensus        61 ~~~~~a~~A~~l~g~~~~g~~l~V~   85 (87)
T 2hzc_A           61 RSVDETTQAMAFDGIIFQGQSLKIR   85 (87)
T ss_dssp             SSHHHHHHHGGGTTCEETTEECEEE
T ss_pred             CCHHHHHHHHhcCCCEECCeEEEEe
Confidence            5789999999999999999999995

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A

Probab=97.12  E-value=0.00012  Score=47.46  Aligned_cols=29  Identities=28%  Similarity=0.319  Sum_probs=25.3

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRt   31 (69)
                      ++++++++||+||+++|.||.|+|.....
T Consensus        94 ~~~e~A~~Al~~~g~~l~gR~i~V~~a~~  122 (139)
T 2hgn_A           94 ATHEEAVAAMSKDRANMQHRYIELFLNST  122 (139)
T ss_dssp             SHHHHHHHHTTCCSCSSSSCCCCCEECCC
T ss_pred             CCHHHHHHHHhhCCCEECCEEEEEEECCC
Confidence            57899999999999999999999976543

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.10  E-value=0.00045  Score=39.81  Aligned_cols=29  Identities=24%  Similarity=0.465  Sum_probs=26.0

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRt   31 (69)
                      ++++++++||+||+.+|.|+.|+|.....
T Consensus        58 ~~~~~a~~A~~~~g~~~~gr~i~v~~a~~   86 (91)
T 2dgw_A           58 SNEEEVKQALKCNREYMGGRYIEVFREKS   86 (91)
T ss_dssp             SSHHHHHHHHHSCSEEETTEEEEEEEESS
T ss_pred             CCHHHHHHHHHhCCceeCCcEEEEEECCc
Confidence            57899999999999999999999987654

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.09  E-value=0.00094  Score=39.22  Aligned_cols=31  Identities=23%  Similarity=0.383  Sum_probs=26.9

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNR   33 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~   33 (69)
                      ++++++++||+ ||+.+|.|+.|+|......-
T Consensus        65 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~   96 (105)
T 1x5u_A           65 LSEEDADYAIKIMDMIKLYGKPIRVNKASAHN   96 (105)
T ss_dssp             SSHHHHHHHHHHSSSCBCSSCBCEEEETTTTS
T ss_pred             CCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence            57899999996 99999999999998776543

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.08  E-value=0.00071  Score=39.39  Aligned_cols=29  Identities=10%  Similarity=0.368  Sum_probs=25.7

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRt   31 (69)
                      ++++++++||+||+.+|.|+.|+|.++..
T Consensus        53 ~~~~~a~~ai~l~g~~~~g~~l~V~~a~~   81 (94)
T 2e5g_A           53 GDVGAREAVLSQSQHSLGGHRLRVRPREQ   81 (94)
T ss_dssp             SSHHHHHHHHTCSCCEETTEECCCBCSCC
T ss_pred             CCHHHHHHHHhcCCeEECCEEEEEEECCc
Confidence            57899999999999999999999986543

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=97.07  E-value=0.00052  Score=40.23  Aligned_cols=29  Identities=14%  Similarity=0.315  Sum_probs=25.9

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRt   31 (69)
                      ++++++++||+||+.+|.|+.|+|.....
T Consensus        66 ~~~~~a~~A~~l~g~~~~g~~l~V~~a~~   94 (101)
T 1fj7_A           66 ESAEDLEKALELTGLKVFGNEIKLEKPKG   94 (101)
T ss_dssp             SSHHHHHHHHHGGGCCBTTBCCEEECCSC
T ss_pred             CCHHHHHHHHhcCCcEECCcEEEEEEcCC
Confidence            57899999999999999999999986653

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.06  E-value=0.00052  Score=41.37  Aligned_cols=28  Identities=21%  Similarity=0.304  Sum_probs=25.0

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCc
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KR   30 (69)
                      ++++++++||+||+++|.||.|+|.+..
T Consensus        63 ~~~~~a~~Al~~~~~~~~gr~i~V~~~~   90 (102)
T 1wez_A           63 ATHEDAVAAMAKDKANMQHRYVELFLNS   90 (102)
T ss_dssp             SSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred             CCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence            5789999999999999999999997654

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.06  E-value=0.0011  Score=38.49  Aligned_cols=31  Identities=16%  Similarity=0.311  Sum_probs=27.1

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNR   33 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~   33 (69)
                      ++++++++||+ ||+.+|.|+.|+|.......
T Consensus        58 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~   89 (98)
T 2cpf_A           58 KKPEQAQKALKQLQGHTVDGHKLEVRISERAT   89 (98)
T ss_dssp             SSHHHHHHHHHHSTTCEETTEECEEECSSCSS
T ss_pred             CCHHHHHHHHHHhCCCeeCCeEEEEEEccCCC
Confidence            47899999996 99999999999998776654

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.06  E-value=0.0023  Score=38.04  Aligned_cols=33  Identities=18%  Similarity=0.263  Sum_probs=28.4

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRPG   35 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~PG   35 (69)
                      ++++++++||+ ||+.+|.|+.|+|.....+.|-
T Consensus        64 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~   97 (114)
T 2do0_A           64 EQSIEAVQAISMFNGQLLFDRPMHVKMDERALPK   97 (114)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEECSCCCCC
T ss_pred             CCHHHHHHHHHHhCCCEeCCCEEEEEEcccCCCC
Confidence            57899999996 9999999999999987766543

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=97.05  E-value=0.0006  Score=38.31  Aligned_cols=29  Identities=28%  Similarity=0.459  Sum_probs=25.7

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt   31 (69)
                      ++++++++|++ ||+.+|.|+.|+|...+.
T Consensus        51 ~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~   80 (83)
T 3md1_A           51 TSQDDAQNAMDSMQGQDLNGRPLRINWAAK   80 (83)
T ss_dssp             SCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             CCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence            57899999996 999999999999987654

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.05  E-value=0.00057  Score=39.99  Aligned_cols=30  Identities=13%  Similarity=0.192  Sum_probs=26.3

Q ss_pred             cCHHHHHHHH-HccCCeeeCceeEEeeCccC
Q psy13491          3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRtN   32 (69)
                      ++++++++|| +||+.+|.|+.|+|...+..
T Consensus        64 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~   94 (97)
T 2e5j_A           64 PDSAAAQQAVSCLQGLRLGTDTLRVALARQQ   94 (97)
T ss_dssp             SSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred             CCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence            5789999999 59999999999999877654

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.04  E-value=0.0012  Score=38.65  Aligned_cols=30  Identities=23%  Similarity=0.344  Sum_probs=26.4

Q ss_pred             cCHHHHHHHH-HccCCeeeCceeEEeeCccC
Q psy13491          3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRtN   32 (69)
                      ++++++++|| +||+.+|.|+.|+|...+..
T Consensus        57 ~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~   87 (97)
T 1x5p_A           57 EKMESADQAVAELNGTQVESVQLKVNIARKQ   87 (97)
T ss_dssp             SSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred             CCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence            5789999999 59999999999999877654

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.03  E-value=0.0011  Score=38.84  Aligned_cols=30  Identities=27%  Similarity=0.366  Sum_probs=26.6

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN   32 (69)
                      ++++++++||+ ||+.+|.|+.|+|......
T Consensus        63 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~   93 (103)
T 2cqi_A           63 YEHRDAAAALAAMNGRKILGKEVKVNWATTP   93 (103)
T ss_dssp             SSHHHHHHHHHHHTTEEETTEEEEEEECCCT
T ss_pred             CCHHHHHHHHHHhCCCCcCCCeEEEEECCCC
Confidence            57899999996 9999999999999887763

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=97.03  E-value=0.00036  Score=38.78  Aligned_cols=26  Identities=8%  Similarity=0.141  Sum_probs=23.6

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEee
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNP   28 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~   28 (69)
                      ++++++++||+||+.+|.|+.|+|..
T Consensus        49 ~~~~~a~~a~~~~~~~~~g~~l~v~~   74 (75)
T 2mss_A           49 ESEDIVEKVCEIHFHEINNKMVECKK   74 (75)
T ss_dssp             SCHHHHHHHHSSSCCCSSSCCCEEEC
T ss_pred             CCHHHHHHHHHCCCCEECCEEEEEEe
Confidence            47899999999999999999999964

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.03  E-value=0.0012  Score=38.77  Aligned_cols=31  Identities=13%  Similarity=0.200  Sum_probs=27.3

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNR   33 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~   33 (69)
                      ++++++++||+ ||+.+|.|+.|+|.......
T Consensus        65 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~   96 (103)
T 2cq0_A           65 HRREDAARAIAGVSGFGYDHLILNVEWAKPST   96 (103)
T ss_dssp             SSHHHHHHHHHHTTTCEETTEECEEEESSCCC
T ss_pred             CCHHHHHHHHHHcCCCeeCCcEEEEEECCCCC
Confidence            57899999996 99999999999999877654

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.02  E-value=0.00054  Score=39.39  Aligned_cols=29  Identities=21%  Similarity=0.344  Sum_probs=25.5

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt   31 (69)
                      ++++++++||+ ||+.+|.|+.|+|...++
T Consensus        65 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~   94 (95)
T 2cqc_A           65 ENVDDAKEAKERANGMELDGRRIRVSGPSS   94 (95)
T ss_dssp             SSHHHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEecCC
Confidence            57899999996 999999999999987653

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.01  E-value=0.00092  Score=38.83  Aligned_cols=28  Identities=21%  Similarity=0.378  Sum_probs=25.1

Q ss_pred             cCHHHHHHHH-HccCCeeeCceeEEeeCc
Q psy13491          3 AKRDEVQTAM-AMDESLFRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KR   30 (69)
                      ++++++++|| .||+.+|.|+.|+|....
T Consensus        65 ~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~   93 (98)
T 2cqp_A           65 ESRDEATAAVIDLNDRPIGSRKVKLVLGS   93 (98)
T ss_dssp             SCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred             CCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence            5789999999 599999999999998765

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=97.01  E-value=0.00087  Score=40.09  Aligned_cols=32  Identities=25%  Similarity=0.376  Sum_probs=28.1

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRP   34 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~P   34 (69)
                      ++++++++||+ ||+.+|.|+.|+|.......+
T Consensus        65 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~   97 (115)
T 2dgo_A           65 FNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP   97 (115)
T ss_dssp             SSHHHHHHHHHHTTTCEETTEECEEEESSCCCC
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEEccCCCC
Confidence            57899999995 999999999999998876654

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.00  E-value=0.0015  Score=38.24  Aligned_cols=30  Identities=17%  Similarity=0.347  Sum_probs=26.8

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN   32 (69)
                      ++++++++||+ ||+.+|.|+.|+|......
T Consensus        61 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~   91 (101)
T 2fc9_A           61 ASFEDAKEALNSCNKREIEGRAIRLELQGPR   91 (101)
T ss_dssp             SSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred             CCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence            57899999996 9999999999999987654

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.00  E-value=0.00078  Score=39.20  Aligned_cols=32  Identities=22%  Similarity=0.408  Sum_probs=28.2

Q ss_pred             cCHHHHHHHH-HccCCeeeCceeEEeeCccCCC
Q psy13491          3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTNRP   34 (69)
Q Consensus         3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRtN~P   34 (69)
                      ++++++++|| +||+.+|.|+.|+|......-+
T Consensus        58 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~   90 (99)
T 1whw_A           58 MFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKE   90 (99)
T ss_dssp             SSHHHHHHHHHHTTTEESSSCEEEEEECCCCST
T ss_pred             CCHHHHHHHHHHhCCCEECCcEEEEEEcCCCcc
Confidence            5789999999 6999999999999998877654

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=97.00  E-value=0.00075  Score=38.94  Aligned_cols=31  Identities=23%  Similarity=0.429  Sum_probs=27.0

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNR   33 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~   33 (69)
                      ++++++++||+ ||+.+|.|++|+|....+..
T Consensus        48 ~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~   79 (88)
T 1wg1_A           48 LNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA   79 (88)
T ss_dssp             SCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred             CCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence            57899999996 99999999999998876543

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.99  E-value=0.00065  Score=39.10  Aligned_cols=27  Identities=22%  Similarity=0.340  Sum_probs=24.3

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPK   29 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~K   29 (69)
                      ++++++++||+ ||+.+|.|++|+|...
T Consensus        66 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a   93 (94)
T 2e5h_A           66 LDKDSAQNCTRAINNKQLFGRVIKASIA   93 (94)
T ss_dssp             SCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred             CCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence            57899999995 9999999999999865

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.99  E-value=0.0015  Score=38.38  Aligned_cols=31  Identities=19%  Similarity=0.359  Sum_probs=27.2

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNR   33 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~   33 (69)
                      ++++++++||+ ||+.+|.|+.|+|.......
T Consensus        63 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~   94 (103)
T 2cq3_A           63 ENSADADRAREKLHGTVVEGRKIEVNNATARV   94 (103)
T ss_dssp             SCHHHHHHHHHHHTTCEETTEECEEEECCSSC
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEEcccCC
Confidence            57899999996 99999999999999877654

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.98  E-value=0.00093  Score=38.46  Aligned_cols=30  Identities=20%  Similarity=0.421  Sum_probs=26.7

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN   32 (69)
                      ++++++++||+ ||+.+|.|+.|+|......
T Consensus        51 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~   81 (90)
T 2dnp_A           51 EKEADAKAAIAQLNGKEVKGKRINVELSTKG   81 (90)
T ss_dssp             SCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred             CCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence            57899999996 9999999999999987654

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=96.97  E-value=0.00088  Score=40.71  Aligned_cols=30  Identities=17%  Similarity=0.352  Sum_probs=26.3

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN   32 (69)
                      ++++++++||+ ||+.+|.|++|+|......
T Consensus        53 ~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~   83 (115)
T 4f25_A           53 ETQEAAERAIEKMNGMLLNDRKVFVGRFKSR   83 (115)
T ss_dssp             SCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred             CCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence            57899999995 9999999999999876654

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=96.96  E-value=0.00065  Score=38.46  Aligned_cols=29  Identities=24%  Similarity=0.329  Sum_probs=25.2

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt   31 (69)
                      ++++++++||+ ||+.+|.|+.|+|.....
T Consensus        56 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~   85 (87)
T 3bs9_A           56 FNKWDAENAIQQMGGQWLGGRQIRTNWATR   85 (87)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEEEC-
T ss_pred             CCHHHHHHHHHHcCCCEECCeEEEEEecCC
Confidence            57899999996 999999999999987653

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=96.96  E-value=0.00062  Score=40.10  Aligned_cols=32  Identities=25%  Similarity=0.280  Sum_probs=27.6

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRP   34 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~P   34 (69)
                      ++++++++||+ ||+.+|.|+.|+|....+..|
T Consensus        73 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~  105 (106)
T 1p27_B           73 ETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGP  105 (106)
T ss_dssp             SCHHHHHHHHHHHTTCBSSSSBCEEEESEESSC
T ss_pred             CCHHHHHHHHHHhcCCEECCcEEEEEeecCCCC
Confidence            57899999996 999999999999998776543

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.96  E-value=0.0014  Score=38.98  Aligned_cols=32  Identities=6%  Similarity=0.199  Sum_probs=27.7

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRP   34 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~P   34 (69)
                      ++++++++||+ ||+.+|.|+.|+|.......+
T Consensus        75 ~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~  107 (115)
T 2cpx_A           75 PNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQ  107 (115)
T ss_dssp             SSHHHHHHHHHHSTTCBCSSCBCEEEECCCCSC
T ss_pred             CCHHHHHHHHHHhCCCEeCCcEEEEEEccCCCC
Confidence            57899999995 999999999999998776543

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=96.95  E-value=0.00062  Score=39.05  Aligned_cols=31  Identities=23%  Similarity=0.327  Sum_probs=27.2

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNR   33 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~   33 (69)
                      ++++++++||+ ||+.+|.|+.|+|...+...
T Consensus        56 ~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~   87 (92)
T 2dgv_A           56 ESPEVAERACRMMNGMKLSGREIDVRIDRNAS   87 (92)
T ss_dssp             SSHHHHHHHHHHHTTCCBTTBCCCCEECSCCS
T ss_pred             CCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence            57899999996 99999999999999877654

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A

Probab=96.94  E-value=0.0006  Score=41.76  Aligned_cols=26  Identities=19%  Similarity=0.203  Sum_probs=23.6

Q ss_pred             cCHHHHHHHH-HccCCeeeCceeEEee
Q psy13491          3 AKRDEVQTAM-AMDESLFRGRQIKVNP   28 (69)
Q Consensus         3 a~~~sv~~Al-~Ln~s~frGR~IkV~~   28 (69)
                      +++++|++|+ +|||..|.||+|+|..
T Consensus        67 ~~~~~A~~Ai~~lnG~~f~GR~i~v~~   93 (105)
T 3v4m_A           67 TSVFDCQKAMQGLTGRKFANRVVVTKY   93 (105)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred             CCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence            5789999999 5999999999999974

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=96.94  E-value=0.00059  Score=39.36  Aligned_cols=28  Identities=25%  Similarity=0.351  Sum_probs=25.0

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KR   30 (69)
                      ++++++++||+ ||+.+|.|+.|+|...+
T Consensus        65 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~   93 (95)
T 2ywk_A           65 KHPESVSYAIALLNGIRLYGRPINVSGPS   93 (95)
T ss_dssp             SSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred             CCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence            47889999996 99999999999998665

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.93  E-value=0.00098  Score=38.97  Aligned_cols=31  Identities=32%  Similarity=0.490  Sum_probs=26.9

Q ss_pred             cCHHHHHHHH-HccCCeeeCceeEEeeCccCC
Q psy13491          3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTNR   33 (69)
Q Consensus         3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRtN~   33 (69)
                      ++++++++|| +||+.+|.|++|+|......-
T Consensus        62 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~   93 (102)
T 1x5s_A           62 ENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSS   93 (102)
T ss_dssp             SSHHHHHHHHHHHTTCCTTSCCCEEEEEECCC
T ss_pred             CCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence            5789999999 599999999999998876544

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=96.90  E-value=0.0011  Score=38.57  Aligned_cols=31  Identities=23%  Similarity=0.280  Sum_probs=26.9

Q ss_pred             cCHHHHHHHHH-ccCCeee--CceeEEeeCccCC
Q psy13491          3 AKRDEVQTAMA-MDESLFR--GRQIKVNPKRTNR   33 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~fr--GR~IkV~~KRtN~   33 (69)
                      ++++++++||+ ||+.+|.  |+.|+|...+...
T Consensus        61 ~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~   94 (97)
T 1why_A           61 ESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP   94 (97)
T ss_dssp             SSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred             CCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence            57899999996 9999999  9999999776543

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.89  E-value=0.0017  Score=38.68  Aligned_cols=31  Identities=10%  Similarity=0.238  Sum_probs=27.3

Q ss_pred             cCHHHHHHHH-HccCCeeeCceeEEeeCccCC
Q psy13491          3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTNR   33 (69)
Q Consensus         3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRtN~   33 (69)
                      ++++++++|| .||+.+|.|+.|+|...+...
T Consensus        69 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~  100 (109)
T 1x4g_A           69 STHESAAHAIVSVNGTTIEGHVVKCYWGKESP  100 (109)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred             CCHHHHHHHHHHcCCCEECCcEEEEEecCCCC
Confidence            5789999999 599999999999999877654

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=96.88  E-value=0.00067  Score=42.51  Aligned_cols=32  Identities=28%  Similarity=0.433  Sum_probs=27.9

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRP   34 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~P   34 (69)
                      ++++++++||+ ||+.+|.|++|+|....+..|
T Consensus        96 ~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~~p  128 (129)
T 2kxn_B           96 ENVDDAKEAKERANGMELDGRRIRVDFSITKRP  128 (129)
T ss_dssp             SCHHHHHHHHHHHTTCCSSSSCCEESCCSSSSC
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence            57899999996 999999999999988776554

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.87  E-value=0.0012  Score=38.56  Aligned_cols=30  Identities=20%  Similarity=0.270  Sum_probs=26.0

Q ss_pred             cCHHHHHHHH-HccCCeeeCceeEEeeCccC
Q psy13491          3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRtN   32 (69)
                      ++++++++|| .||+.+|.|+.|+|......
T Consensus        66 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~   96 (100)
T 2do4_A           66 ENESQASQAVMKMDGMTIKENIIKVAISNSG   96 (100)
T ss_dssp             SSHHHHHHHHHHHTTEESSSCEEEEEECCCC
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEECCCC
Confidence            5789999999 59999999999999876543

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=96.86  E-value=0.0018  Score=38.72  Aligned_cols=31  Identities=23%  Similarity=0.288  Sum_probs=27.1

Q ss_pred             cCHHHHHHHH-HccCCeeeCceeEEeeCccCC
Q psy13491          3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTNR   33 (69)
Q Consensus         3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRtN~   33 (69)
                      ++++++++|| .||+.+|.|+.|+|...+...
T Consensus        75 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~  106 (115)
T 2cpz_A           75 DNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKN  106 (115)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEECCCCSC
T ss_pred             CCHHHHHHHHHHcCCCEECCEEEEEEEcCCCC
Confidence            5789999999 599999999999999877554

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=96.85  E-value=0.0012  Score=38.48  Aligned_cols=30  Identities=10%  Similarity=0.148  Sum_probs=26.2

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN   32 (69)
                      ++++++++||+ ||+.+|.|+.|+|.....+
T Consensus        52 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~   82 (96)
T 2x1f_A           52 RDLESSASAVRNLNGYQLGSRFLKCGYSSNS   82 (96)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred             CCHHHHHHHHHHhCCCeECCeEEEEEEcCCC
Confidence            57899999995 9999999999999877654

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=96.84  E-value=0.0011  Score=39.42  Aligned_cols=32  Identities=16%  Similarity=0.214  Sum_probs=27.6

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRP   34 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~P   34 (69)
                      ++++++++||+ ||+.+|.|+.|+|......-|
T Consensus        76 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~  108 (110)
T 1oo0_B           76 ETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP  108 (110)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEESEESSC
T ss_pred             CCHHHHHHHHHHcCCCEECCcEEEEEEcccCCC
Confidence            57899999996 999999999999998776543

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=96.83  E-value=0.0013  Score=40.97  Aligned_cols=32  Identities=19%  Similarity=0.358  Sum_probs=28.3

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRP   34 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~P   34 (69)
                      ++.++|++||+ ||+.+|.|+.|+|...++..|
T Consensus       100 ~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~  132 (143)
T 3egn_A          100 PNEKAAAKALKEANGYVLFGKPMVVQFARSARP  132 (143)
T ss_dssp             SSHHHHHHHHHHHTTBEETTEECEEEECCCSCC
T ss_pred             CCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence            57899999996 999999999999998887654

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.82  E-value=0.00094  Score=41.30  Aligned_cols=27  Identities=19%  Similarity=0.300  Sum_probs=24.7

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeC
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPK   29 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~K   29 (69)
                      ++++++++||+||+.+|.||.|+|.+.
T Consensus        64 ~~~~~a~~Al~~~~~~~~gr~i~V~~a   90 (109)
T 2dnn_A           64 LSPQDTFEALKRNRMLMIQRYVEVSPA   90 (109)
T ss_dssp             SSHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred             CCHHHHHHHHhcCCCeECCeEEEEEEC
Confidence            578999999999999999999999765

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=96.81  E-value=0.0013  Score=38.95  Aligned_cols=30  Identities=13%  Similarity=0.279  Sum_probs=26.3

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN   32 (69)
                      ++++++++||+ ||+.+|.|+.|+|...+.+
T Consensus        65 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~   95 (97)
T 2xnq_A           65 DNPQSVRDAIEXESQEMNFGKKLILEVSSSN   95 (97)
T ss_dssp             SSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred             CCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence            57899999996 9999999999999877653

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=96.81  E-value=0.0015  Score=38.19  Aligned_cols=31  Identities=23%  Similarity=0.328  Sum_probs=26.8

Q ss_pred             cCHHHHHHHH-HccCCeeeCceeEEeeCccCC
Q psy13491          3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTNR   33 (69)
Q Consensus         3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRtN~   33 (69)
                      ++++++++|| .||+.+|.|+.|+|......-
T Consensus        59 ~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~   90 (99)
T 2cpj_A           59 ETRTLAEIAKVELDNMPLRGKQLRVRFACHSA   90 (99)
T ss_dssp             SSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred             CCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence            4678999999 599999999999999877643

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=96.80  E-value=0.0023  Score=37.56  Aligned_cols=32  Identities=9%  Similarity=0.268  Sum_probs=27.8

Q ss_pred             cCHHHHHHHHH-c-cCCeeeCceeEEeeCccCCC
Q psy13491          3 AKRDEVQTAMA-M-DESLFRGRQIKVNPKRTNRP   34 (69)
Q Consensus         3 a~~~sv~~Al~-L-n~s~frGR~IkV~~KRtN~P   34 (69)
                      ++++++++||+ | |+.+|.|+.|+|.......+
T Consensus        66 ~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~~   99 (107)
T 2cph_A           66 ITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVT   99 (107)
T ss_dssp             SSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCCC
T ss_pred             CCHHHHHHHHHHhccCCeECCCEEEEEeCCCCCC
Confidence            57899999995 8 99999999999998877654

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=96.80  E-value=0.001  Score=38.92  Aligned_cols=27  Identities=26%  Similarity=0.362  Sum_probs=24.2

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPK   29 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~K   29 (69)
                      ++++++++||+ ||+.+|.|+.|+|...
T Consensus        71 ~~~~~a~~Ai~~l~g~~~~g~~l~V~~A   98 (99)
T 2la6_A           71 DDPPSAKAAIDWFDGKEFSGNPIKVSFA   98 (99)
T ss_dssp             SSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred             CCHHHHHHHHHHhCCCEeCCcEEEEEec
Confidence            57899999995 9999999999999754

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=96.78  E-value=0.00097  Score=40.89  Aligned_cols=27  Identities=26%  Similarity=0.314  Sum_probs=24.5

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeC
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPK   29 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~K   29 (69)
                      +++++|++||+||+.+|.||.|+|...
T Consensus        69 ~~~~~a~~Al~~~g~~~~gr~i~V~~a   95 (118)
T 2db1_A           69 ESEDDVKLALKKDRESMGHRYIEVFKS   95 (118)
T ss_dssp             SSHHHHHHHGGGTTEEETTEEEEEEEE
T ss_pred             CCHHHHHHHHhcCCCeECCeEEEEEEC
Confidence            578999999999999999999999754

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=96.77  E-value=0.00086  Score=39.64  Aligned_cols=29  Identities=21%  Similarity=0.407  Sum_probs=25.8

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRt   31 (69)
                      ++++++++||+||+.+|.|+.|+|.....
T Consensus        69 ~~~~~a~~Ai~l~g~~~~g~~l~V~~a~~   97 (100)
T 2j76_E           69 EDLDSLLSALSLNEESLGNRRIRVDVADQ   97 (100)
T ss_dssp             CCHHHHHHHHHTTTCCBTTBCCCCEECCC
T ss_pred             CCHHHHHHHHhcCCCEECCeEEEEEeccC
Confidence            57899999999999999999999987653

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.75  E-value=0.0014  Score=37.89  Aligned_cols=29  Identities=14%  Similarity=0.222  Sum_probs=25.5

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt   31 (69)
                      ++++++++||+ ||+.+|.|+.|+|.....
T Consensus        62 ~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~   91 (96)
T 2e44_A           62 SSKDQARQALDKLNGFQLENFTLKVAYIPD   91 (96)
T ss_dssp             SSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred             CCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence            57899999996 999999999999987654

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=96.75  E-value=0.00094  Score=39.09  Aligned_cols=29  Identities=14%  Similarity=0.361  Sum_probs=25.4

Q ss_pred             cCHHHHHHHH-HccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRt   31 (69)
                      ++.+++++|| .||+.+|.|+.|+|...+.
T Consensus        71 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~  100 (101)
T 2la4_A           71 DTHEQAAVCIVALANFPFQGRNLRTGWGKE  100 (101)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred             CCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence            5789999999 5999999999999987654

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}

Probab=96.74  E-value=0.00057  Score=38.79  Aligned_cols=25  Identities=20%  Similarity=0.217  Sum_probs=22.6

Q ss_pred             cCHHHHHHHHH-ccCCeeeCc-eeEEe
Q psy13491          3 AKRDEVQTAMA-MDESLFRGR-QIKVN   27 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR-~IkV~   27 (69)
                      ++++++++||+ ||+.+|.|+ +|+|+
T Consensus        55 ~~~~~A~~Ai~~lng~~~~g~~~l~V~   81 (81)
T 2krb_A           55 ASPAHAVDAVKNADGYKLDKQHTFRVN   81 (81)
T ss_dssp             SSHHHHHHHHTTSSSCCCSSSSCCCCC
T ss_pred             CCHHHHHHHHHHhcCcccCCceeEEeC
Confidence            57899999996 999999999 99984

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=96.74  E-value=0.0012  Score=41.46  Aligned_cols=33  Identities=30%  Similarity=0.602  Sum_probs=29.1

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRPG   35 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~PG   35 (69)
                      ++++++++||+ ||+.+|.|+.|+|...+...|.
T Consensus        97 ~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~  130 (135)
T 2lea_A           97 HDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP  130 (135)
T ss_dssp             SCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred             CCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence            57899999995 9999999999999988876654

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.74  E-value=0.0016  Score=37.82  Aligned_cols=32  Identities=16%  Similarity=0.264  Sum_probs=27.3

Q ss_pred             cCHHHHHHHHH-ccCCeeeCce----eEEeeCccCCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQ----IKVNPKRTNRP   34 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~----IkV~~KRtN~P   34 (69)
                      ++++++++||+ ||+.+|.|+.    |+|...+..-|
T Consensus        60 ~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~~~   96 (99)
T 2div_A           60 ADLATAEKCLHKINGKPLPGATPAKRFKLNYATYSGP   96 (99)
T ss_dssp             SCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCCSS
T ss_pred             CCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCCCC
Confidence            57899999997 9999999999    99987765543

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=96.73  E-value=0.0012  Score=37.93  Aligned_cols=27  Identities=22%  Similarity=0.441  Sum_probs=24.0

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPK   29 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~K   29 (69)
                      ++++++++||+ ||+.+|.|+.|+|...
T Consensus        65 ~~~~~a~~Ai~~l~g~~~~gr~l~v~~a   92 (95)
T 2ek1_A           65 ESRDEATAAVIDLNDRPIGSRKVKLSGP   92 (95)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred             CCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence            57899999996 9999999999999753

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=96.72  E-value=0.0011  Score=40.25  Aligned_cols=31  Identities=13%  Similarity=0.030  Sum_probs=27.3

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNR   33 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~   33 (69)
                      ++++++++||+ ||+..|.|+.|+|.....++
T Consensus        54 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~   85 (111)
T 1whx_A           54 LEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV   85 (111)
T ss_dssp             SCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred             CCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence            57899999995 99999999999999877654

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=96.70  E-value=0.0018  Score=37.37  Aligned_cols=30  Identities=13%  Similarity=0.276  Sum_probs=26.4

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN   32 (69)
                      ++++++++|++ ||+..|.|+.|+|......
T Consensus        59 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~   89 (97)
T 1nu4_A           59 KEVSSATNALRSMQGFPFYDKPMRIQYAKTD   89 (97)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEECSSC
T ss_pred             CCHHHHHHHHHHhCCCEECCcEEEEEEccCC
Confidence            47899999996 9999999999999877654

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=96.70  E-value=0.0015  Score=40.10  Aligned_cols=28  Identities=18%  Similarity=0.297  Sum_probs=24.8

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KR   30 (69)
                      ++++++++|++ |||..|.||+|+|....
T Consensus        64 ~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~   92 (105)
T 2pe8_A           64 ERVESAIKAVVDLNGRYFGGRVVKACFYN   92 (105)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             CCHHHHHHHHHHHCCCEECCcEEEEEEcC
Confidence            57899999995 99999999999998654

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.68  E-value=0.00077  Score=40.95  Aligned_cols=29  Identities=3%  Similarity=0.059  Sum_probs=26.1

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRt   31 (69)
                      +++++|++||++|+.+|.|+.|+|..+..
T Consensus        60 ~~~e~a~~Ai~~~~~~~~gr~l~V~~~~~   88 (103)
T 1s79_A           60 DSIESAKKFVETPGQKYKETDLLILFKDD   88 (103)
T ss_dssp             SSHHHHHHHHTSSCCCCTTTTCEEEEHHH
T ss_pred             CCHHHHHHHHHcCCCEECCEEEEEEEchH
Confidence            57899999999999999999999987654

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A

Probab=96.67  E-value=0.0013  Score=41.37  Aligned_cols=27  Identities=15%  Similarity=0.193  Sum_probs=24.1

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPK   29 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~K   29 (69)
                      ++++++++|+. |||..|.||+|+|..-
T Consensus        63 ~~~e~A~~Ai~~lnG~~f~GR~i~v~~~   90 (114)
T 3s6e_A           63 PSIAAAIAAVNALHGRWFAGKMITAAYV   90 (114)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEEE
Confidence            57899999995 9999999999999754

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.67  E-value=0.0024  Score=37.38  Aligned_cols=30  Identities=7%  Similarity=0.196  Sum_probs=26.2

Q ss_pred             cCHHHHHHHHH-ccCCe-eeCceeEEeeCccC
Q psy13491          3 AKRDEVQTAMA-MDESL-FRGRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~-frGR~IkV~~KRtN   32 (69)
                      ++++++++||+ ||++. |.|+.|+|......
T Consensus        59 ~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~   90 (104)
T 2dhg_A           59 TDELEQKRALTECQGAVGLGSKPVRLSVAIPK   90 (104)
T ss_dssp             SCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCC
T ss_pred             CCHHHHHHHHHHccCCcccCCEeEEEEEccCC
Confidence            57899999996 99999 99999999876543

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.67  E-value=0.00073  Score=41.37  Aligned_cols=27  Identities=19%  Similarity=0.353  Sum_probs=24.5

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeC
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPK   29 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~K   29 (69)
                      +++++|++||+||+.+|.|+.|+|.+.
T Consensus        75 ~~~~~a~~Al~~~g~~~~gr~i~V~~a  101 (124)
T 1wel_A           75 RNEADYKAALCRHKQYMGNRFIQVHPI  101 (124)
T ss_dssp             SSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred             CCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence            578899999999999999999999864

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=96.66  E-value=0.0011  Score=38.73  Aligned_cols=31  Identities=13%  Similarity=0.264  Sum_probs=27.5

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNR   33 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~   33 (69)
                      ++++++++||+ ||+.+|.|+.|+|.....+.
T Consensus        53 ~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~   84 (96)
T 2kvi_A           53 DNPQSVRDAIECESQEMNFGKKLILEVSSSNA   84 (96)
T ss_dssp             SCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred             CCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence            57899999996 99999999999999887654

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=96.66  E-value=0.0015  Score=37.78  Aligned_cols=29  Identities=7%  Similarity=0.181  Sum_probs=25.6

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt   31 (69)
                      ++++++++||+ ||+.+|.|+.|+|.....
T Consensus        61 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   90 (96)
T 1fjc_A           61 KSEADAEKNLEEKQGAEIDGRSVSLYYTGE   90 (96)
T ss_dssp             SSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred             CCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence            57899999996 999999999999987653

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=96.65  E-value=0.00096  Score=40.06  Aligned_cols=28  Identities=25%  Similarity=0.347  Sum_probs=24.3

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KR   30 (69)
                      ++++++++||+ ||+.+|.|+.|+|..++
T Consensus        90 ~~~~~A~~A~~~l~g~~~~g~~l~V~~ak  118 (118)
T 2khc_A           90 DNPDSAQVAIKAMNGFQVGTKRLKVQLKK  118 (118)
T ss_dssp             ESSHHHHHHHHHCCCCEETTEECCEEEC-
T ss_pred             CCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence            47789999996 99999999999998764

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=96.65  E-value=0.0018  Score=39.20  Aligned_cols=31  Identities=10%  Similarity=0.193  Sum_probs=26.8

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNR   33 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~   33 (69)
                      ++.+++++||+ ||+.+|.|+.|+|...+...
T Consensus        73 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~  104 (108)
T 2jvo_A           73 EEAESAAKAIEEVHGKSFANQPLEVVYSKLPA  104 (108)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEESCSCCC
T ss_pred             CCHHHHHHHHHHcCCCEECCeEEEEEEecCCC
Confidence            57899999996 99999999999998776543

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.65  E-value=0.0016  Score=36.70  Aligned_cols=28  Identities=25%  Similarity=0.405  Sum_probs=24.7

Q ss_pred             cCHHHHHHHHH-c-cCCeeeCceeEEeeCc
Q psy13491          3 AKRDEVQTAMA-M-DESLFRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~-L-n~s~frGR~IkV~~KR   30 (69)
                      ++++++++||+ | |+.+|.|+.|+|...+
T Consensus        56 ~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak   85 (85)
T 2ytc_A           56 ATRQAAEVAAEKSFNKLIVNGRRLNVKWGR   85 (85)
T ss_dssp             SSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred             CCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence            57899999996 8 9999999999998653

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=96.65  E-value=0.0015  Score=40.86  Aligned_cols=33  Identities=30%  Similarity=0.602  Sum_probs=28.5

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRPG   35 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~PG   35 (69)
                      +++++++.||+ ||+.+|.|+.|+|.......|.
T Consensus       120 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~  153 (158)
T 2kn4_A          120 HDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP  153 (158)
T ss_dssp             SBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred             CCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence            57899999995 9999999999999988766543

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.64  E-value=0.0017  Score=37.94  Aligned_cols=30  Identities=20%  Similarity=0.459  Sum_probs=26.4

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN   32 (69)
                      ++++++++||+ ||+..|.|+.|+|......
T Consensus        58 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~   88 (104)
T 1p1t_A           58 QDQETALSAMRNLNGREFSGRALRVDNAASE   88 (104)
T ss_dssp             SCHHHHHHHHHHSSSBSCSSSCBEEEETTCT
T ss_pred             CCHHHHHHHHHHhCCCeeCCcEEEEEeCCCc
Confidence            57899999995 9999999999999877654

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=96.64  E-value=0.0026  Score=37.12  Aligned_cols=31  Identities=13%  Similarity=0.281  Sum_probs=27.3

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNR   33 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~   33 (69)
                      ++++++++||+ ||+.+|.|+.|+|.......
T Consensus        45 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~   76 (101)
T 2hvz_A           45 EDPRDAEDAVRGLDGKVICGSRVRVELSTGMP   76 (101)
T ss_dssp             SSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred             CCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence            57899999996 99999999999999877654

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=96.63  E-value=0.0015  Score=38.78  Aligned_cols=28  Identities=0%  Similarity=0.081  Sum_probs=24.8

Q ss_pred             cCHHHHHHHHH-ccCCeeeC-ceeEEeeCc
Q psy13491          3 AKRDEVQTAMA-MDESLFRG-RQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frG-R~IkV~~KR   30 (69)
                      ++++++++||+ ||+.+|.| ++|+|....
T Consensus        62 ~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~   91 (100)
T 3ns6_A           62 GSMNDAKKIIKSFHGKRLDLKHRLFLYTMK   91 (100)
T ss_dssp             SSHHHHHHHHHHHTTCBSSSSCBCEEEESH
T ss_pred             CCHHHHHHHHHHhCCcccCCCeEEEEEECc
Confidence            57899999995 99999999 999998653

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A

Probab=96.63  E-value=0.0013  Score=37.34  Aligned_cols=26  Identities=19%  Similarity=0.288  Sum_probs=23.5

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEee
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNP   28 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~   28 (69)
                      ++++++++||++|+.+|.|+.|+|..
T Consensus        61 ~~~~~a~~A~~~~~~~~~g~~i~v~~   86 (87)
T 3s7r_A           61 KDAASVEKVLDQKEHRLDGRVIDPKK   86 (87)
T ss_dssp             SSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred             CCHHHHHHHHHhCCCEECCEEEEEEe
Confidence            47889999999999999999999964

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3

Probab=96.60  E-value=0.0013  Score=40.08  Aligned_cols=26  Identities=15%  Similarity=0.469  Sum_probs=23.3

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEee
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNP   28 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~   28 (69)
                      ++++++++|+. |||..|.||+|+|..
T Consensus        76 ~~~~~A~~A~~~lng~~~~Gr~i~v~~  102 (104)
T 1jmt_A           76 RREEDAEKAVIDLNNRWFNGQPIHAEL  102 (104)
T ss_dssp             SCHHHHHHHHHHHTTCEETTEECCEEE
T ss_pred             CCHHHHHHHHHHHCCCEECCEEEEEEE
Confidence            57899999995 999999999999963

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=96.55  E-value=0.002  Score=37.87  Aligned_cols=27  Identities=15%  Similarity=0.329  Sum_probs=24.3

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPK   29 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~K   29 (69)
                      ++++++++||+ ||+.+|.|+.|+|...
T Consensus        78 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a  105 (107)
T 3ulh_A           78 ERKADALKAMKQYNGVPLDGRPMNIQLV  105 (107)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred             CCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence            57899999996 9999999999999754

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A

Probab=96.55  E-value=0.0017  Score=40.90  Aligned_cols=26  Identities=19%  Similarity=0.406  Sum_probs=23.5

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEee
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNP   28 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~   28 (69)
                      ++++++++|+. |||..|.||+|+|..
T Consensus        79 ~~~e~A~~Ai~~LnGr~f~GR~i~v~~  105 (118)
T 3ue2_A           79 SIASETHKAIQALNGRWFAGRKVVAEV  105 (118)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred             CCHHHHHHHHHHHCCCEECCcEEEEEE
Confidence            57899999995 999999999999974

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.54  E-value=0.0017  Score=39.26  Aligned_cols=29  Identities=14%  Similarity=0.241  Sum_probs=25.6

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRt   31 (69)
                      ++++++++||++|+.+|.|+.|+|.....
T Consensus        65 ~~~~~a~~Al~~~~~~~~gr~i~v~~a~~   93 (114)
T 2cpy_A           65 KNEDDARKSERLHRKKLNGREAFVHVVTL   93 (114)
T ss_dssp             SSHHHHHHHGGGCSEEETTEEEEEEEECH
T ss_pred             CCHHHHHHHHHhCCCccCCeEEEEEECCH
Confidence            57899999999999999999999976543

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=96.52  E-value=0.0012  Score=39.59  Aligned_cols=28  Identities=18%  Similarity=0.241  Sum_probs=25.0

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCc
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KR   30 (69)
                      ++++++++||+||++.|.||.|+|....
T Consensus        63 ~~~~~a~~Al~~~~~~~~gr~i~V~~a~   90 (107)
T 2lmi_A           63 ESEQDVQKALEKHRMYMGQRYVEVYEIN   90 (107)
T ss_dssp             SSHHHHHHHHTTTTCCSSSSCCCCEECC
T ss_pred             CCHHHHHHHHHhCcceeCCeEEEEEECC
Confidence            5789999999999999999999997643

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=96.52  E-value=0.002  Score=40.83  Aligned_cols=30  Identities=20%  Similarity=0.309  Sum_probs=26.2

Q ss_pred             cCHHHHHHHH-HccCCeeeCceeEEeeCccC
Q psy13491          3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRtN   32 (69)
                      +++++|++|| .||+.+|.|++|+|....+.
T Consensus        80 ~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~  110 (127)
T 2a3j_A           80 ATQESAQAFVEAFQGYPFQGNPLVITFSETP  110 (127)
T ss_dssp             SSHHHHHHHHHHSTTCCCTTSCCEEEECCCC
T ss_pred             CCHHHHHHHHHHHCCCEeCCCEEEEEEccCc
Confidence            5789999999 59999999999999876653

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A

Probab=96.51  E-value=0.0014  Score=42.03  Aligned_cols=27  Identities=26%  Similarity=0.329  Sum_probs=24.7

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeC
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPK   29 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~K   29 (69)
                      +++++|++||+||+++|.||.|+|...
T Consensus        96 ~~~e~a~~Al~~~g~~l~gr~i~V~~a  122 (136)
T 2hgl_A           96 GSEDDVKMALKKDRESMGHRYIEVFKS  122 (136)
T ss_dssp             SSHHHHHHHHTTTEEESSSSEEEEEEC
T ss_pred             CCHHHHHHHHhcCCCEECCEEEEEEEC
Confidence            578999999999999999999999754

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.50  E-value=0.0018  Score=41.02  Aligned_cols=34  Identities=24%  Similarity=0.223  Sum_probs=29.3

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCCCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRPGI   36 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~PG~   36 (69)
                      ++.+++++|++ ||+.+|-||+|+|....++--=+
T Consensus        54 ~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd~~   88 (96)
T 2diu_A           54 INQDSAERAQKRMENEDVFGNRIIVSFTPKNRELC   88 (96)
T ss_dssp             SSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCCCC
T ss_pred             CCHHHHHHHHHHhcCCccCCceEEEEecCCCccee
Confidence            57899999995 99999999999999888775444

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.50  E-value=0.0027  Score=38.37  Aligned_cols=28  Identities=25%  Similarity=0.420  Sum_probs=24.9

Q ss_pred             cCHHHHHHHH-HccCCeeeCceeEEeeCc
Q psy13491          3 AKRDEVQTAM-AMDESLFRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KR   30 (69)
                      ++++++++|| .||+..|.|++|+|....
T Consensus        72 ~~~~~A~~Ai~~lng~~~~gr~l~v~~a~  100 (112)
T 2dit_A           72 RDPEEADYCIQTLDGRWFGGRQITAQAWD  100 (112)
T ss_dssp             SCHHHHHHHHHHSTTCEETTEECEEEECC
T ss_pred             CCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence            5789999999 599999999999998754

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}

Probab=95.47  E-value=0.00046  Score=41.60  Aligned_cols=30  Identities=23%  Similarity=0.325  Sum_probs=25.8

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN   32 (69)
                      +++++|++||+ ||+.+|.|+.|+|......
T Consensus        65 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~   95 (116)
T 2lcw_A           65 DDPPSAKAAIDWFDGKEFSGNPIKVSFATRR   95 (116)
Confidence            47889999996 9999999999999876643

>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}

Probab=96.39  E-value=0.0024  Score=39.75  Aligned_cols=27  Identities=15%  Similarity=0.300  Sum_probs=24.3

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPK   29 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~K   29 (69)
                      .++++++.|++ ||++++.|++|+|...
T Consensus        51 ~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A   78 (89)
T 2wbr_A           51 TTREEANKAQMALNNCVLANTTIFAESP   78 (89)
T ss_dssp             SSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred             CCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence            57899999995 9999999999999765

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.39  E-value=0.0026  Score=38.26  Aligned_cols=29  Identities=21%  Similarity=0.404  Sum_probs=25.3

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt   31 (69)
                      ++++++++|++ ||+.+|.|+.|+|.....
T Consensus        77 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~  106 (109)
T 2err_A           77 ENSADADRAREKLHGTVVEGRKIEVNNATA  106 (109)
T ss_dssp             CCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             CCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            46789999996 999999999999987653

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=96.38  E-value=0.0054  Score=35.86  Aligned_cols=32  Identities=19%  Similarity=0.190  Sum_probs=27.4

Q ss_pred             cCHHHHHHHHH-ccCCeeeC---ceeEEeeCccCCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRG---RQIKVNPKRTNRP   34 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frG---R~IkV~~KRtN~P   34 (69)
                      ++++++++||+ ||+.+|.|   +.|+|.......+
T Consensus        64 ~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~   99 (105)
T 2dnh_A           64 SSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKE   99 (105)
T ss_dssp             SSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSCC
T ss_pred             CCHHHHHHHHHHHcCCccCCCCCccEEEEECccCcc
Confidence            57899999995 99999999   9999988776543

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=96.37  E-value=0.003  Score=41.53  Aligned_cols=28  Identities=18%  Similarity=0.356  Sum_probs=24.9

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KR   30 (69)
                      ++++++++||+ ||+.+|.|++|+|....
T Consensus       151 ~~~~~a~~Ai~~lng~~~~g~~i~V~~a~  179 (213)
T 4f02_A          151 ETQEAAERAIEKMNGMLLNDRKVFVGRFK  179 (213)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence            57899999995 99999999999998654

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=96.37  E-value=0.0037  Score=38.54  Aligned_cols=30  Identities=30%  Similarity=0.504  Sum_probs=26.4

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCccC
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRtN   32 (69)
                      ++++++++||+||+.+|.|++|+|......
T Consensus        59 ~~~~~A~~A~~~~~~~~~g~~i~v~~~~~~   88 (172)
T 2g4b_A           59 RSVDETTQAMAFDGIIFQGQSLKIRRPHDY   88 (172)
T ss_dssp             SSHHHHHHHGGGTTCEETTEECEEECCSSC
T ss_pred             CCHHHHHHHHHhCCcEecCceeeecCCccc
Confidence            578999999999999999999999865543

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=96.37  E-value=0.003  Score=40.94  Aligned_cols=28  Identities=18%  Similarity=0.476  Sum_probs=24.9

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KR   30 (69)
                      +++++|++||+ ||+.+|.|+.|+|....
T Consensus       107 ~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~  135 (156)
T 3n9u_C          107 ASENSVHKLLELLPGKVLNGEKVDVRPAT  135 (156)
T ss_dssp             SCHHHHHHHHHHSTTCEETTEECEEEECC
T ss_pred             CCHHHHHHHHHHcCCCEECCeEeEEEEcC
Confidence            57899999996 89999999999998664

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.36  E-value=0.0014  Score=39.15  Aligned_cols=29  Identities=17%  Similarity=0.236  Sum_probs=25.4

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRt   31 (69)
                      ++++++++||+||+.+|.|+.|+|.....
T Consensus        75 ~~~~~a~~A~~l~g~~~~g~~l~V~~a~~  103 (114)
T 2cq4_A           75 CEIQSVPLAIGLTGQRLLGVPIIVQASQA  103 (114)
T ss_dssp             SCGGGHHHHHHHTTEEETTEEEEEEEHHH
T ss_pred             CcHHHHHHHHHcCCCEeCCeEEEEEecCC
Confidence            46789999999999999999999987543

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.34  E-value=0.0006  Score=38.70  Aligned_cols=28  Identities=14%  Similarity=0.121  Sum_probs=24.4

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KR   30 (69)
                      ++++++++||+ ||+.+|.|+.|+|...+
T Consensus        55 ~~~~~a~~A~~~l~g~~~~g~~~~~~~~~   83 (85)
T 1x4e_A           55 DSPSAAQKAVTALKASGVQAQMAKQSGPS   83 (85)
T ss_dssp             SCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred             CCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence            57899999996 99999999999997543

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=96.33  E-value=0.0032  Score=39.20  Aligned_cols=29  Identities=14%  Similarity=0.315  Sum_probs=25.8

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRt   31 (69)
                      ++++++++||+||+.+|.|++|+|.....
T Consensus        62 ~~~~~a~~A~~l~g~~~~g~~l~v~~~~~   90 (175)
T 1fje_B           62 ESAEDLEKALELTGLKVFGNEIKLEKPKG   90 (175)
T ss_dssp             SSHHHHHHHHHGGGEEETTEEEEEECCCC
T ss_pred             CCHHHHHHHHhcCCCEeCCeEEEEecCCC
Confidence            57899999999999999999999986553

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=96.32  E-value=0.0027  Score=38.29  Aligned_cols=28  Identities=18%  Similarity=0.306  Sum_probs=24.9

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KR   30 (69)
                      ++++++++||+ ||+..|.|+.|+|....
T Consensus        76 ~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~  104 (108)
T 2jrs_A           76 SDSECAKKALEQLNGFELAGRPMKVGHVT  104 (108)
T ss_dssp             SCHHHHHHHHHHHTTCCSSSSCCEEECSC
T ss_pred             CCHHHHHHHHHHcCCCEECCEEEEEEEcc
Confidence            57899999995 99999999999998654

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.32  E-value=0.0064  Score=36.35  Aligned_cols=29  Identities=24%  Similarity=0.279  Sum_probs=25.6

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRt   31 (69)
                      ++++++++||++|+.+|.|+.|+|.....
T Consensus        77 ~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~  105 (116)
T 1x4b_A           77 SSMAEVDAAMAARPHSIDGRVVEPKRAVA  105 (116)
T ss_dssp             SSHHHHHHHHTSCSEEETTEEEEEECCSS
T ss_pred             CCHHHHHHHHHhCCcEECCEEEEEEECCC
Confidence            57899999998899999999999987654

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=96.31  E-value=0.007  Score=35.43  Aligned_cols=31  Identities=23%  Similarity=0.379  Sum_probs=26.4

Q ss_pred             cCHHHHHHHHH-ccCCee---eCceeEEeeCccCC
Q psy13491          3 AKRDEVQTAMA-MDESLF---RGRQIKVNPKRTNR   33 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~f---rGR~IkV~~KRtN~   33 (69)
                      ++++++++||+ ||+.++   .|+.|+|......-
T Consensus        63 ~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~   97 (106)
T 2dgp_A           63 CERESALKAQSALHEQKTLPGMNRPIQVKPADSES   97 (106)
T ss_dssp             SSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCS
T ss_pred             CCHHHHHHHHHHhcCCcccCCCCceEEEEECCccc
Confidence            57899999995 999998   99999998776543

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=96.28  E-value=0.005  Score=39.25  Aligned_cols=34  Identities=21%  Similarity=0.204  Sum_probs=28.8

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCCCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRPGI   36 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~PG~   36 (69)
                      ++.+++++||+ ||+.+|.|+.|+|....+-.+..
T Consensus       175 ~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~~  209 (216)
T 2qfj_A          175 EKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPL  209 (216)
T ss_dssp             SSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSSTT
T ss_pred             cCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCCC
Confidence            47899999996 99999999999999877754443

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=96.26  E-value=0.0019  Score=35.62  Aligned_cols=26  Identities=8%  Similarity=0.045  Sum_probs=23.4

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEee
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNP   28 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~   28 (69)
                      ++++++++||++|+.+|.|++|+|..
T Consensus        49 ~~~~~a~~Ai~~~~~~~~g~~l~v~~   74 (75)
T 1iqt_A           49 KEEEPVKKIMEKKYHNVGLSKCEIKV   74 (75)
T ss_dssp             SSSHHHHHHHTTSSCCBTTBCCCEEE
T ss_pred             CCHHHHHHHHHhCCCeECCEEEEEEE
Confidence            47889999999999999999999964

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=96.26  E-value=0.0029  Score=39.86  Aligned_cols=31  Identities=29%  Similarity=0.504  Sum_probs=26.9

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCccCC
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKRTNR   33 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRtN~   33 (69)
                      +++++|++||+||+.+|.|+.|+|.......
T Consensus        59 ~~~~~A~~Al~l~g~~~~g~~i~v~~~~~~~   89 (198)
T 2yh0_A           59 RSVDETTQAMAFDGIIFQGQSLKIRRPHDYQ   89 (198)
T ss_dssp             SCSHHHHHHGGGTTEEETTEEEEEECCCCCC
T ss_pred             CCHHHHHHHHHhcCCEEcCceEEEeCCCCCC
Confidence            4789999999999999999999998766543

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.25  E-value=0.015  Score=34.70  Aligned_cols=29  Identities=24%  Similarity=0.316  Sum_probs=24.7

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN   32 (69)
                      ++++++++||+ ||+ +|.|+.|+|......
T Consensus        67 ~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~~   96 (116)
T 2cqd_A           67 ADRAAAERACKDPNP-IIDGRKANVNLAYLG   96 (116)
T ss_dssp             SSHHHHHHHHTCSSC-EETTEECEEEESTTT
T ss_pred             CCHHHHHHHHHhCCC-cCCCEEEEEEEcccC
Confidence            57899999996 777 999999999987653

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=96.22  E-value=0.0043  Score=37.68  Aligned_cols=28  Identities=29%  Similarity=0.474  Sum_probs=24.8

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KR   30 (69)
                      +++++++.||+ ||+..|.|+.|+|....
T Consensus       137 ~~~~~A~~A~~~l~g~~~~g~~i~v~~a~  165 (166)
T 3md3_A          137 TSQDDAQNAMDSMQGQDLNGRPLRINWAA  165 (166)
T ss_dssp             SCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred             CCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence            47899999996 99999999999998653

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=96.21  E-value=0.002  Score=38.38  Aligned_cols=28  Identities=18%  Similarity=0.125  Sum_probs=24.3

Q ss_pred             cCHHHHHHHHH-ccCCeeeCc-eeEEeeCc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGR-QIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR-~IkV~~KR   30 (69)
                      ++++++++||. ||+.+|.|+ +|+|....
T Consensus        69 ~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~   98 (105)
T 2nlw_A           69 ASPAHAVDAVKNADGYKLDKQHTFRVNLFT   98 (105)
T ss_dssp             CSSSHHHHHHHHCSSEECSTTCEEEEECSC
T ss_pred             CCHHHHHHHHHHhCCcccCCCceEEEEEcc
Confidence            46788999996 999999999 99998654

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=96.18  E-value=0.0045  Score=37.52  Aligned_cols=30  Identities=17%  Similarity=0.314  Sum_probs=26.0

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN   32 (69)
                      ++++++++||+ ||+.+|.|+.|+|......
T Consensus        84 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~  114 (124)
T 2kt5_A           84 ERRADALKAMKQYKGVPLDGRPMDIQLVASQ  114 (124)
T ss_dssp             SSHHHHHHHHHHHTTEESSSCEEEEEEECCT
T ss_pred             CCHHHHHHHHHHcCCCEECCcEEEEEEeCCC
Confidence            57899999996 9999999999999876543

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=96.17  E-value=0.0041  Score=37.04  Aligned_cols=28  Identities=11%  Similarity=-0.013  Sum_probs=25.2

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KR   30 (69)
                      ++++++++||+ ||+.+|.|+.|+|....
T Consensus        55 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~   83 (115)
T 3lqv_A           55 EDIFDAKNAVDHLSGFNVSNRYLVVLYYN   83 (115)
T ss_dssp             SSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred             CCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence            57899999996 99999999999998765

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.15  E-value=0.0034  Score=37.31  Aligned_cols=27  Identities=15%  Similarity=0.190  Sum_probs=24.3

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeC
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPK   29 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~K   29 (69)
                      ++++++++||++|+++|.||.|+|.+.
T Consensus        65 ~~~~~a~~A~~~~~~~~~gr~i~v~~~   91 (104)
T 1wg5_A           65 ASQEIAEKALKKHKERIGHRYIEIFKS   91 (104)
T ss_dssp             SSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred             CCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence            578999999988999999999999754

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=96.13  E-value=0.0034  Score=38.54  Aligned_cols=28  Identities=18%  Similarity=0.237  Sum_probs=25.2

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCc
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KR   30 (69)
                      ++++++++||+||+..|.|++|+|....
T Consensus       137 ~~~~~a~~A~~~~~~~~~g~~i~V~~a~  164 (167)
T 2cjk_A          137 DSADAVDRVCQNKFIDFKDRKIEIKRAE  164 (167)
T ss_dssp             SSHHHHHHHHHCSEECSSSSCEEEEECC
T ss_pred             CCHHHHHHHHhCCCEEeCCeEEEEeecC
Confidence            4789999999999999999999998654

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=96.12  E-value=0.0045  Score=41.31  Aligned_cols=29  Identities=17%  Similarity=0.362  Sum_probs=25.7

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt   31 (69)
                      +++++|++||+ ||+.+|.|++|+|...+.
T Consensus        50 ~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~   79 (205)
T 3tyt_A           50 ADGYAVDRAITHLNNNFMFGQKMNVCVSKQ   79 (205)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred             CCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence            57899999996 999999999999997653

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=96.12  E-value=0.0097  Score=34.97  Aligned_cols=30  Identities=27%  Similarity=0.361  Sum_probs=26.2

Q ss_pred             cCHHHHHHHHH-cc------CCeeeCceeEEeeCccC
Q psy13491          3 AKRDEVQTAMA-MD------ESLFRGRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al~-Ln------~s~frGR~IkV~~KRtN   32 (69)
                      ++++++++||+ ||      +.+|.|+.|+|......
T Consensus        65 ~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~  101 (111)
T 1x4h_A           65 MTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTR  101 (111)
T ss_dssp             SSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCC
T ss_pred             CCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCC
Confidence            57899999995 99      99999999999877654

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=96.11  E-value=0.0048  Score=39.43  Aligned_cols=32  Identities=16%  Similarity=0.214  Sum_probs=27.5

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRP   34 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~P   34 (69)
                      ++.+++++||+ ||+..|.|+.|+|.......|
T Consensus       122 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~  154 (165)
T 1rk8_A          122 ETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP  154 (165)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence            47899999995 999999999999998876654

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=96.05  E-value=0.0038  Score=37.98  Aligned_cols=26  Identities=35%  Similarity=0.501  Sum_probs=23.3

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEee
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNP   28 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~   28 (69)
                      ++++++++||+ ||+.+|.|+.|+|..
T Consensus       113 ~~~~~a~~A~~~l~g~~~~g~~l~v~~  139 (140)
T 2ku7_A          113 ELAEDAAAAIDNMNESELFGRTIRVNL  139 (140)
T ss_dssp             SCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence            57899999995 999999999999964

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=96.04  E-value=0.0047  Score=38.41  Aligned_cols=28  Identities=7%  Similarity=0.189  Sum_probs=25.1

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KR   30 (69)
                      ++++++++||+ ||+.+|.|++|+|....
T Consensus       144 ~~~~~A~~A~~~l~g~~~~g~~i~v~~a~  172 (175)
T 1fje_B          144 KSEADAEKNLEEKQGAEIDGRSVSLYYTG  172 (175)
T ss_dssp             SSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred             CCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence            57899999996 99999999999998654

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}

Probab=95.99  E-value=0.004  Score=37.46  Aligned_cols=29  Identities=10%  Similarity=0.234  Sum_probs=24.6

Q ss_pred             cCHHHHHHHHH-ccCC----eeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MDES----LFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s----~frGR~IkV~~KRt   31 (69)
                      ++++++++||+ ||++    .+.||+|+|..+++
T Consensus        61 ~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks   94 (95)
T 2lkz_A           61 SSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS   94 (95)
T ss_dssp             SSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred             CCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence            47789999995 9997    48999999997764

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=95.98  E-value=0.0031  Score=35.97  Aligned_cols=30  Identities=30%  Similarity=0.543  Sum_probs=22.6

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNR   33 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~   33 (69)
                      ++++ +++|++ ||+.+|.|+.|+|.......
T Consensus        51 ~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~   81 (90)
T 2ki2_A           51 QEES-VSEAIAKLDNTDFMGRTIRVTEANPKK   81 (90)
T ss_dssp             CTTH-HHHHHHTSCSSCCSSSSCSEEEC----
T ss_pred             CCHH-HHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence            3566 889995 99999999999998776543

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.95  E-value=0.0074  Score=35.49  Aligned_cols=30  Identities=17%  Similarity=0.137  Sum_probs=25.7

Q ss_pred             cCHHHHHHHHH-cc--CCeeeCceeEEeeCccC
Q psy13491          3 AKRDEVQTAMA-MD--ESLFRGRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al~-Ln--~s~frGR~IkV~~KRtN   32 (69)
                      ++++++++||+ ||  +.+|.|+.|+|......
T Consensus        60 ~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~   92 (109)
T 2dis_A           60 ESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPE   92 (109)
T ss_dssp             SSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSS
T ss_pred             cCHHHHHHHHHHhhCCCceecCCeEEEEEcCCC
Confidence            57899999996 86  59999999999987654

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=95.94  E-value=0.007  Score=38.02  Aligned_cols=30  Identities=13%  Similarity=0.186  Sum_probs=25.0

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCccC
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRtN   32 (69)
                      ++++++++||++|+.+|.|+.|+|......
T Consensus       154 ~~~~~A~~A~~~~~~~~~G~~i~v~~a~~k  183 (196)
T 1l3k_A          154 DDHDSVDKIVIQKYHTVNGHNCEVRKALSK  183 (196)
T ss_dssp             SSHHHHHHHHHCSCCEETTEECEEEECC--
T ss_pred             CCHHHHHHHHHhCCcEECCEEEEEEecCCh
Confidence            478999999988999999999999866543

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=95.92  E-value=0.0061  Score=38.07  Aligned_cols=29  Identities=14%  Similarity=0.269  Sum_probs=25.4

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt   31 (69)
                      ++++++++||+ ||+.+|.|+.|+|.....
T Consensus       118 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~  147 (150)
T 2i2y_A          118 EDPRDAADAVRELDGRTLCGCRVRVELSNG  147 (150)
T ss_dssp             SSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred             CCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence            57899999996 999999999999987543

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.80  E-value=0.0066  Score=35.59  Aligned_cols=29  Identities=24%  Similarity=0.310  Sum_probs=24.9

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRt   31 (69)
                      ++++++++||++|+.+|.|+.|+|.....
T Consensus        66 ~~~~~a~~a~~~~~~~~~g~~l~V~~a~~   94 (105)
T 2dh8_A           66 KDPNCVGTVLASRPHTLDGRNIDPKPCTP   94 (105)
T ss_dssp             SSTTHHHHHHHHCSEEETTEEEBCCCSCC
T ss_pred             CCHHHHHHHHHhCCCeECCEEEEEEEccC
Confidence            46789999998899999999999976553

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=95.72  E-value=0.0055  Score=37.76  Aligned_cols=26  Identities=12%  Similarity=0.221  Sum_probs=23.3

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEee
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNP   28 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~   28 (69)
                      ++++++++|++ ||+.+|.|++|+|..
T Consensus       144 ~~~~~A~~A~~~l~g~~~~g~~l~V~~  170 (172)
T 2g4b_A          144 VDINVTDQAIAGLNGMQLGDKKLLVQR  170 (172)
T ss_dssp             SSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred             CCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence            46789999996 999999999999974

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=95.58  E-value=0.0076  Score=37.92  Aligned_cols=30  Identities=10%  Similarity=0.190  Sum_probs=25.8

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN   32 (69)
                      ++++++++||+ ||+..|.|+.|+|......
T Consensus       164 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~  194 (198)
T 2yh0_A          164 VDINVTDQAIAGLNGMQLGDKKLLVQRASVG  194 (198)
T ss_dssp             SSSSHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred             CCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence            46788999996 9999999999999876653

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=95.48  E-value=0.015  Score=35.19  Aligned_cols=30  Identities=17%  Similarity=0.304  Sum_probs=26.2

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN   32 (69)
                      ++++++++||+ ||+..|.|+.|+|......
T Consensus        52 ~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~   82 (167)
T 1fxl_A           52 IDPKDAEKAINTLNGLRLQTKTIKVSYARPS   82 (167)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred             CCHHHHHHHHHHcCCCccCCceEEEEecCCC
Confidence            57899999996 9999999999999877643

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=95.46  E-value=0.007  Score=33.32  Aligned_cols=25  Identities=12%  Similarity=0.158  Sum_probs=21.7

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEee
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNP   28 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~   28 (69)
                      ++++++++||+ || .+|.|++|+|..
T Consensus        50 ~~~~~a~~a~~~~~-~~~~g~~l~v~~   75 (77)
T 1uaw_A           50 MDQAGVDKVLAQSR-HELDSKTIDPKV   75 (77)
T ss_dssp             CCTTHHHHHHHTTT-CCCSSCCCEEEE
T ss_pred             cCHHHHHHHHHhCC-CccCCEEEEEEe
Confidence            47889999997 66 999999999974

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=95.46  E-value=0.011  Score=34.47  Aligned_cols=28  Identities=7%  Similarity=0.099  Sum_probs=22.9

Q ss_pred             cCHHHHHHHHH-c-cCCeeeCceeEEeeCc
Q psy13491          3 AKRDEVQTAMA-M-DESLFRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~-L-n~s~frGR~IkV~~KR   30 (69)
                      +++++|++||+ | |+.+|.|++|+|....
T Consensus        52 ~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~   81 (91)
T 2lxi_A           52 SHLQDATRWMEANQHSLNILGQKVSMHYSD   81 (91)
T ss_dssp             SSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred             cCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence            57899999996 6 4568999999998654

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A

Probab=95.45  E-value=0.0041  Score=39.64  Aligned_cols=27  Identities=19%  Similarity=0.203  Sum_probs=24.0

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeC
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPK   29 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~K   29 (69)
                      +++++|++||++|+.+|.||.|+|.+.
T Consensus        92 ~~~e~A~~Al~~~~~~l~gR~I~V~~a  118 (126)
T 2hgm_A           92 ASQELAEKALGKHKERIGHRYIEVFKS  118 (126)
T ss_dssp             SSTTHHHHHHTTTTCCBTTBCCCCEEE
T ss_pred             CCHHHHHHHHHHCCCEECCEEEEEEEC
Confidence            478899999998999999999999754

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A

Probab=95.44  E-value=0.013  Score=38.83  Aligned_cols=30  Identities=3%  Similarity=0.041  Sum_probs=26.4

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCccC
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRtN   32 (69)
                      +++++|++||++++.+|.|+.|+|.+|.+.
T Consensus       158 ~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y  187 (193)
T 2voo_A          158 DSIESAKKFVETPGQKYKETDLLILFKDDY  187 (193)
T ss_dssp             SSHHHHHHHHHCTTCEETTEECEEEETTTC
T ss_pred             CCHHHHHHHHHhCCCeECCEEEEEEEhHHH
Confidence            578999999997778999999999988764

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=95.39  E-value=0.011  Score=37.70  Aligned_cols=30  Identities=10%  Similarity=0.244  Sum_probs=26.2

Q ss_pred             cCHHHHHHHHH-ccCCeee-CceeEEeeCccC
Q psy13491          3 AKRDEVQTAMA-MDESLFR-GRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~fr-GR~IkV~~KRtN   32 (69)
                      ++++++++||+ ||+..|. |++|+|...+..
T Consensus       166 ~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~  197 (198)
T 1qm9_A          166 GSVEEAVQALIDLHNHDLGENHHLRVSFSKST  197 (198)
T ss_dssp             SSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred             CCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence            57899999996 9999999 999999876643

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=95.33  E-value=0.015  Score=38.46  Aligned_cols=30  Identities=10%  Similarity=0.244  Sum_probs=26.5

Q ss_pred             cCHHHHHHHHH-ccCCeee-CceeEEeeCccC
Q psy13491          3 AKRDEVQTAMA-MDESLFR-GRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~fr-GR~IkV~~KRtN   32 (69)
                      ++++++++||+ ||+..|. |++|+|...+..
T Consensus       197 ~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~  228 (229)
T 2adc_A          197 GSVEEAVQALIDLHNHDLGENHHLRVSFSKST  228 (229)
T ss_dssp             SSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred             CCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence            57899999996 9999999 999999987654

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}

Probab=95.30  E-value=0.022  Score=34.16  Aligned_cols=29  Identities=10%  Similarity=0.115  Sum_probs=24.8

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRt   31 (69)
                      ++++++++||+.++.+|.|+.|+|.....
T Consensus        75 ~~~~~A~~Ai~~~~~~l~g~~l~V~~a~~  103 (109)
T 2rs2_A           75 MDQAGVDKVLAQSRHELDSKTIDPKVAFP  103 (109)
T ss_dssp             SSHHHHHHHHHSSCEEETTEEEEEEECCC
T ss_pred             CCHHHHHHHHHHCCCcCCCEEEEEEEccC
Confidence            57899999998667999999999986653

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.29  E-value=0.0087  Score=37.74  Aligned_cols=27  Identities=22%  Similarity=0.231  Sum_probs=24.2

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeC
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPK   29 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~K   29 (69)
                      ++++++++||++|+++|.+|.|+|.+.
T Consensus        76 ~~~~~A~~Al~~~~~~l~gR~i~V~~a  102 (123)
T 2dha_A           76 ACEEYAQNALRKHKDLLGKRYIELFRS  102 (123)
T ss_dssp             SSHHHHHHHHTTTTEESSSCEECCEEE
T ss_pred             CCHHHHHHHHHhCCCeeCCeEEEEEEC
Confidence            578999999999999999999999754

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=95.28  E-value=0.023  Score=34.38  Aligned_cols=31  Identities=10%  Similarity=0.212  Sum_probs=26.6

Q ss_pred             cCHHHHHHHH-HccCCeeeCceeEEeeCccCC
Q psy13491          3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTNR   33 (69)
Q Consensus         3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRtN~   33 (69)
                      ++++++++|+ .||+..+.|+.|+|.......
T Consensus        49 ~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~   80 (166)
T 3md3_A           49 HQSHDANIALQTLNGKQIENNIVKINWAFQSQ   80 (166)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred             CCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence            4789999999 699999999999998765443

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=95.27  E-value=0.011  Score=38.94  Aligned_cols=26  Identities=19%  Similarity=0.406  Sum_probs=23.3

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEee
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNP   28 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~   28 (69)
                      ++++++++|+. |||..|.||+|.|..
T Consensus       183 ~~~~~a~~a~~~l~gr~~~gr~i~~~~  209 (222)
T 3dxb_A          183 SIASETHKAIQALNGRWFAGRKVVAEV  209 (222)
T ss_dssp             SSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred             CCHHHHHHHHHHhcCceECCeEEEEEE
Confidence            57899999995 999999999999874

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=95.15  E-value=0.013  Score=35.96  Aligned_cols=30  Identities=20%  Similarity=0.379  Sum_probs=24.7

Q ss_pred             cCHHHHHHHHH-ccC--CeeeCceeEEeeCccC
Q psy13491          3 AKRDEVQTAMA-MDE--SLFRGRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~--s~frGR~IkV~~KRtN   32 (69)
                      ++++++++||+ ||+  .+|.|++|+|...++.
T Consensus        60 ~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~   92 (102)
T 1x4d_A           60 ATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY   92 (102)
T ss_dssp             SSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred             CCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence            57899999995 885  4699999999877653

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}

Probab=95.10  E-value=0.012  Score=38.59  Aligned_cols=29  Identities=17%  Similarity=0.316  Sum_probs=25.5

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt   31 (69)
                      ++++++++||+ ||+.+|.|++|+|...-+
T Consensus       137 ~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~  166 (177)
T 2f3j_A          137 ERRADALKAMKQYKGVPLDGRPMDIQLVAS  166 (177)
T ss_dssp             SCHHHHHHHHHHSTTCBCSSSBCEEEEESS
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence            57899999996 999999999999987654

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=95.08  E-value=0.027  Score=34.36  Aligned_cols=29  Identities=21%  Similarity=0.334  Sum_probs=25.6

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt   31 (69)
                      ++++++++|++ ||+..|.|+.|+|.....
T Consensus        53 ~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~   82 (168)
T 1b7f_A           53 TSEMDSQRAIKVLNGITVRNKRLKVSYARP   82 (168)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             CCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence            47899999996 999999999999987654

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=95.08  E-value=0.018  Score=38.81  Aligned_cols=29  Identities=28%  Similarity=0.477  Sum_probs=25.7

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRt   31 (69)
                      ++++++++||+||+..|.|+.|+|.....
T Consensus       262 ~~~~~A~~A~~l~g~~~~g~~i~V~~a~~  290 (292)
T 2ghp_A          262 ENKDSAERALQMNRSLLGNREISVSLADK  290 (292)
T ss_dssp             SSHHHHHHHGGGTTEEETTEEEEEEECCC
T ss_pred             CCHHHHHHHHHhcCCEECCcEEEEEEecC
Confidence            57899999999999999999999987653

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=95.07  E-value=0.02  Score=36.47  Aligned_cols=29  Identities=17%  Similarity=0.088  Sum_probs=24.5

Q ss_pred             cCHHHHHHHHH-ccCCeeeC--ceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MDESLFRG--RQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frG--R~IkV~~KRt   31 (69)
                      +++++|++|++ |||.+|.|  +.|+|...+.
T Consensus        70 ~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~  101 (124)
T 2e5i_A           70 ESVLCAQKAKAALNGADIYAGCCTLKIEYARP  101 (124)
T ss_dssp             SSHHHHHHHHHHHTTCCCBTTBSEEEEECCSC
T ss_pred             CCHHHHHHHHHHhCCCEecCCCeEEEEEEecC
Confidence            57899999995 99999988  6899986654

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=95.03  E-value=0.021  Score=38.32  Aligned_cols=31  Identities=13%  Similarity=0.283  Sum_probs=26.7

Q ss_pred             cCHHHHHHHH-HccCCeeeCceeEEeeCccCC
Q psy13491          3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTNR   33 (69)
Q Consensus         3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRtN~   33 (69)
                      ++++++++|| +||+.+|.|+.|+|.......
T Consensus        60 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~   91 (282)
T 3pgw_A           60 KEVSSATNALRSMQGFPFYDKPMRIQYAKTDS   91 (282)
T ss_pred             CCHHHHHHHHHHhcCCeeCCcEEEEEEeccCc
Confidence            5789999999 599999999999998775543

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=94.96  E-value=0.022  Score=38.22  Aligned_cols=28  Identities=7%  Similarity=0.089  Sum_probs=24.9

Q ss_pred             cCHHHHHHHHH-ccCCeee-CceeEEeeCc
Q psy13491          3 AKRDEVQTAMA-MDESLFR-GRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~fr-GR~IkV~~KR   30 (69)
                      ++.+++++||+ ||+.+|. |+.|+|...+
T Consensus       252 ~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak  281 (282)
T 3pgw_A          252 DNEVQAGAARDALQGFKITQNNAMKISFAK  281 (282)
T ss_pred             CCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence            57899999996 9999999 9999998654

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=94.85  E-value=0.019  Score=36.53  Aligned_cols=30  Identities=20%  Similarity=0.444  Sum_probs=26.0

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN   32 (69)
                      ++++++++||+ ||+..|.|+.|+|......
T Consensus        49 ~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~   79 (198)
T 1qm9_A           49 ADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ   79 (198)
T ss_dssp             TTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred             CCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence            47899999996 9999999999999876644

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=94.82  E-value=0.021  Score=34.86  Aligned_cols=26  Identities=27%  Similarity=0.502  Sum_probs=23.0

Q ss_pred             cCHHHHHHHHH-ccCCeeeC--ceeEEee
Q psy13491          3 AKRDEVQTAMA-MDESLFRG--RQIKVNP   28 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frG--R~IkV~~   28 (69)
                      +++++++.|++ ||+..|.|  ++|+|..
T Consensus       139 ~~~~~A~~A~~~l~g~~~~g~~~~l~V~~  167 (168)
T 1b7f_A          139 NKREEAQEAISALNNVIPEGGSQPLSVRL  167 (168)
T ss_dssp             SSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred             CCHHHHHHHHHHhcCCEecCCCeEEEEEe
Confidence            57899999996 99999988  9999964

>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}

Probab=94.82  E-value=0.019  Score=35.28  Aligned_cols=33  Identities=12%  Similarity=0.262  Sum_probs=26.6

Q ss_pred             CHHHHHHHHH-ccCC----eeeCceeEEeeCccCCCCCC
Q psy13491          4 KRDEVQTAMA-MDES----LFRGRQIKVNPKRTNRPGIS   37 (69)
Q Consensus         4 ~~~sv~~Al~-Ln~s----~frGR~IkV~~KRtN~PG~~   37 (69)
                      ++ ++++||+ ||+.    +|.|+.|+|...+...+.+.
T Consensus        76 ~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~~~~~~  113 (131)
T 2m2b_A           76 TI-EAAQLLQILQALHPPLTIDGKTINVEFAKGSKRDMA  113 (131)
T ss_dssp             HH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCSCCCCC
T ss_pred             CH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCCCCCCC
Confidence            45 8889985 9999    99999999998876555443

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=94.74  E-value=0.025  Score=37.43  Aligned_cols=30  Identities=20%  Similarity=0.444  Sum_probs=26.2

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN   32 (69)
                      +++++|++||+ ||+.+|.|+.|+|...+..
T Consensus        80 ~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~  110 (229)
T 2adc_A           80 ADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ  110 (229)
T ss_dssp             SCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred             CCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence            57899999996 9999999999999876643

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.71  E-value=0.031  Score=35.34  Aligned_cols=32  Identities=9%  Similarity=0.040  Sum_probs=26.7

Q ss_pred             cCHHHHHHHHH-ccCCee-----eCceeEEeeCccCCCC
Q psy13491          3 AKRDEVQTAMA-MDESLF-----RGRQIKVNPKRTNRPG   35 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~f-----rGR~IkV~~KRtN~PG   35 (69)
                      ++++++++|++ |||++|     .|++|.|.... ++|=
T Consensus        71 ~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~-~~p~  108 (114)
T 2cq2_A           71 RTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE-KVQW  108 (114)
T ss_dssp             SSHHHHHHHHHHTTTCEEECTTSCEEECEEEEES-CCCC
T ss_pred             CCHHHHHHHHHHhCCCEEccccCCCcEEEEEecc-cCcc
Confidence            57899999995 999999     79999998766 5553

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=94.60  E-value=0.028  Score=37.86  Aligned_cols=29  Identities=14%  Similarity=0.133  Sum_probs=25.3

Q ss_pred             cCHHHHHHHHH-ccCCeeeC--ceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MDESLFRG--RQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frG--R~IkV~~KRt   31 (69)
                      ++++++++|++ |||.+|.|  +.|+|...+.
T Consensus        92 ~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~  123 (164)
T 1sjr_A           92 ADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL  123 (164)
T ss_dssp             SCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred             CCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence            57899999995 99999966  9999987765

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.59  E-value=0.023  Score=35.42  Aligned_cols=29  Identities=14%  Similarity=0.292  Sum_probs=24.3

Q ss_pred             cCHHHHHHHHH-cc--CCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MD--ESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln--~s~frGR~IkV~~KRt   31 (69)
                      ++++++++||+ ||  +.+|.|++|+|.....
T Consensus        60 ~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~   91 (105)
T 1sjq_A           60 NTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH   91 (105)
T ss_dssp             SSHHHHHHHHHHHTTSCCEETTEECCBCCCSS
T ss_pred             CCHHHHHHHHHHhccCCceECCEEEEEEEcCC
Confidence            57899999996 76  4799999999987654

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=94.46  E-value=0.041  Score=36.87  Aligned_cols=30  Identities=13%  Similarity=0.155  Sum_probs=26.1

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN   32 (69)
                      ++++++++||+ ||+..|.|+.|+|......
T Consensus       234 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~  264 (284)
T 3smz_A          234 ETAEMAEEAQQQADGLSLGGSHLRVSFCAPG  264 (284)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEECCSS
T ss_pred             CCHHHHHHHHHHhCCCccCCeEEEEEEecCC
Confidence            57899999996 9999999999999876543

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A

Probab=94.35  E-value=0.048  Score=35.24  Aligned_cols=29  Identities=14%  Similarity=0.133  Sum_probs=25.5

Q ss_pred             cCHHHHHHHHH-ccCCeeeC--ceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MDESLFRG--RQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frG--R~IkV~~KRt   31 (69)
                      ++++++++|++ |||.+|.|  +.|+|...+.
T Consensus        74 ~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~  105 (130)
T 3zzy_A           74 ADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL  105 (130)
T ss_dssp             SCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred             CCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence            57899999995 99999999  9999987665

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=94.27  E-value=0.048  Score=34.11  Aligned_cols=29  Identities=24%  Similarity=0.294  Sum_probs=25.7

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRt   31 (69)
                      +++++|++||++|+.+|.|+.|+|.....
T Consensus        63 ~~~~~A~~A~~~~~~~~~g~~l~v~~~~~   91 (196)
T 1l3k_A           63 ATVEEVDAAMNARPHKVDGRVVEPKRAVS   91 (196)
T ss_dssp             SSHHHHHHHHHTCSCEETTEECEEEECCC
T ss_pred             CCHHHHHHHHhcCCCEECCEEeeeecccC
Confidence            57899999999999999999999987644

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.20  E-value=0.048  Score=32.22  Aligned_cols=28  Identities=0%  Similarity=0.125  Sum_probs=22.1

Q ss_pred             cCHHHHHHHHH-ccCCee--------eCceeEEeeCc
Q psy13491          3 AKRDEVQTAMA-MDESLF--------RGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~f--------rGR~IkV~~KR   30 (69)
                      ++++++++||+ ||+.+|        .+++|+|....
T Consensus        74 ~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~  110 (114)
T 1x5o_A           74 ESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSG  110 (114)
T ss_dssp             SCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECC
T ss_pred             CCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccC
Confidence            57899999996 999999        46667776443

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=94.19  E-value=0.035  Score=37.35  Aligned_cols=29  Identities=17%  Similarity=0.180  Sum_probs=25.6

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRt   31 (69)
                      +++++|++||+||+..|.|+.|.|.+...
T Consensus        89 ~~~~~A~~A~~~~~~~~~g~~i~v~~~~~  117 (292)
T 2ghp_A           89 ARYDGALAAITKTHKVVGQNEIIVSHLTE  117 (292)
T ss_dssp             SSHHHHHHHHTTTTCEETTEECEEEECCS
T ss_pred             CCHHHHHHHHHhCCcEeCCcEEEEEECCC
Confidence            57899999999999999999999976543

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.11  E-value=0.1  Score=30.18  Aligned_cols=28  Identities=11%  Similarity=0.210  Sum_probs=23.8

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRt   31 (69)
                      ++++++++||+ ++.+|.|+.|+|.....
T Consensus        65 ~~~~~a~~A~~-~~~~~~g~~l~v~~a~~   92 (103)
T 2cqg_A           65 TEYETQVKVMS-QRHMIDGRWCDCKLPNS   92 (103)
T ss_dssp             SSHHHHHHHHH-SCEEETTEEEEEECCCT
T ss_pred             CCHHHHHHHHH-cCCeeCCeEEEEEecCC
Confidence            57899999998 57899999999987654

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=94.05  E-value=0.031  Score=35.53  Aligned_cols=26  Identities=31%  Similarity=0.493  Sum_probs=22.5

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEee
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNP   28 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~   28 (69)
                      ++++++++||+ ||++.|.|+.|+|..
T Consensus        78 ~~~~~A~~A~~~l~~~~~~g~~l~v~~  104 (216)
T 2qfj_A           78 EVPEAAQLALEQMNSVMLGGRNIKVGR  104 (216)
T ss_dssp             SSHHHHHHHHHHHSSCCCC-CCCEEEC
T ss_pred             CCHHHHHHHHHHccCCeeCCeeEEEec
Confidence            47899999997 999999999999954

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}

Probab=93.84  E-value=0.04  Score=34.09  Aligned_cols=28  Identities=14%  Similarity=0.049  Sum_probs=23.4

Q ss_pred             cCHHHHHHHHH-ccCCe--eeCceeEEeeCc
Q psy13491          3 AKRDEVQTAMA-MDESL--FRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~--frGR~IkV~~KR   30 (69)
                      ++++++++||+ ||+..  +.|++|.|....
T Consensus        65 ~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~   95 (100)
T 3r27_A           65 EDVLGACNAVNYAADNQIYIAGHPAFVNYST   95 (100)
T ss_dssp             SSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred             CCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence            57899999995 99875  789999998654

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=93.72  E-value=0.048  Score=32.94  Aligned_cols=25  Identities=28%  Similarity=0.351  Sum_probs=21.2

Q ss_pred             cCHHHHHHHHH-ccCCeeeCce--eEEe
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQ--IKVN   27 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~--IkV~   27 (69)
                      ++++++++|++ ||+..|.|+.  |+|.
T Consensus       138 ~~~~~A~~A~~~l~g~~~~g~~~~i~v~  165 (167)
T 1fxl_A          138 DKRIEAEEAIKGLNGQKPSGATEPITVK  165 (167)
T ss_dssp             SSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred             CCHHHHHHHHHHhcCCccCCCccceEEE
Confidence            57899999996 9999999987  5554

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=93.71  E-value=0.051  Score=34.37  Aligned_cols=29  Identities=14%  Similarity=0.292  Sum_probs=24.2

Q ss_pred             cCHHHHHHHHH-cc--CCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MD--ESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln--~s~frGR~IkV~~KRt   31 (69)
                      +++++|++||+ ||  +.+|.|++|+|.....
T Consensus        75 ~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~  106 (119)
T 2ad9_A           75 NTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH  106 (119)
T ss_dssp             SCHHHHHHHHHHHHHHCCCBTTBCCEEEECSS
T ss_pred             CCHHHHHHHHHHhccCCceECCeEEEEEEccC
Confidence            57899999996 77  4689999999987654

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=93.67  E-value=0.076  Score=32.12  Aligned_cols=30  Identities=13%  Similarity=0.159  Sum_probs=24.7

Q ss_pred             cCHHHHHHHHH-c--cCCeeeCceeEEeeCccC
Q psy13491          3 AKRDEVQTAMA-M--DESLFRGRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al~-L--n~s~frGR~IkV~~KRtN   32 (69)
                      ++++++++||+ |  |+.+|.|++|+|......
T Consensus        59 ~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~   91 (101)
T 2cq1_A           59 ATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK   91 (101)
T ss_dssp             SSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred             CCHHHHHHHHHHhccCCceECCcEEEEEEcCcc
Confidence            57889999995 5  578999999999877654

>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=93.53  E-value=0.041  Score=36.22  Aligned_cols=25  Identities=20%  Similarity=0.345  Sum_probs=18.7

Q ss_pred             CHHHHH-HHHHccCCeeeCceeEEee
Q psy13491          4 KRDEVQ-TAMAMDESLFRGRQIKVNP   28 (69)
Q Consensus         4 ~~~sv~-~Al~Ln~s~frGR~IkV~~   28 (69)
                      |..++- ++|+|||++|.||+|+|..
T Consensus        71 d~~~AgKasLaL~G~ef~gr~Lr~gT   96 (117)
T 2l9w_A           71 DSKFAAKMLMILNGSQFQGKVIRSGT   96 (117)
T ss_dssp             CHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred             cchhhHHHHhhcCCeeecCeEEEecC
Confidence            444444 4458999999999999853

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1

Probab=93.36  E-value=0.05  Score=33.03  Aligned_cols=29  Identities=14%  Similarity=0.203  Sum_probs=23.7

Q ss_pred             cCHHHHHHHHH-ccC--CeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MDE--SLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~--s~frGR~IkV~~KRt   31 (69)
                      ++++++++||+ ||+  .+|.|++|+|.....
T Consensus        59 ~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~   90 (104)
T 1wex_A           59 ENIDSAKECVTFAADVPVYIAGQQAFFNYSTS   90 (104)
T ss_dssp             SSHHHHHHHHHHHHHSCCBSSSSBCEEEECSS
T ss_pred             CCHHHHHHHHHHhccCCceECCEEEEEEEccC
Confidence            57899999996 765  469999999987654

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=93.29  E-value=0.04  Score=34.54  Aligned_cols=29  Identities=21%  Similarity=0.351  Sum_probs=23.6

Q ss_pred             cCHHHHHHHHH-cc--CCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MD--ESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln--~s~frGR~IkV~~KRt   31 (69)
                      ++++++++||+ ||  +.+|.||+|+|.....
T Consensus        70 ~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~  101 (112)
T 1x4f_A           70 ETREDAMAMVDHCLKKALWFQGRCVKVDLSEK  101 (112)
T ss_dssp             SSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred             CCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence            57899999995 75  4679999999987654

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=93.27  E-value=0.082  Score=35.38  Aligned_cols=29  Identities=21%  Similarity=0.390  Sum_probs=25.3

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt   31 (69)
                      ++++++++||+ ||+..|.|+.|+|....+
T Consensus        65 ~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~   94 (284)
T 3smz_A           65 LNGEQAEAAINAFHQSRLRERELSVQLQPT   94 (284)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             CCHHHHHHHHHHcCCCeeCCeEEEEEecCC
Confidence            57899999995 999999999999987543

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=92.87  E-value=0.11  Score=33.91  Aligned_cols=29  Identities=10%  Similarity=0.347  Sum_probs=25.2

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt   31 (69)
                      ++++++++||+ ||+..+.|+.|+|.....
T Consensus        65 ~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~   94 (213)
T 4f02_A           65 QQPADAERALDTMNFDVIKGKPVRIMWSQR   94 (213)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             CCHHHHHHHHHHhhhhhcCCcccccccccc
Confidence            57899999995 999999999999986643

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=92.73  E-value=0.11  Score=35.02  Aligned_cols=29  Identities=17%  Similarity=0.362  Sum_probs=25.6

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt   31 (69)
                      +++++|++||+ ||+..|.|+.|+|.....
T Consensus        66 ~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~   95 (261)
T 3sde_A           66 ESRTLAEIAKAELDGTILKSRPLRIRFATH   95 (261)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             CCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence            57899999996 999999999999987653

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=92.54  E-value=0.1  Score=31.79  Aligned_cols=27  Identities=26%  Similarity=0.230  Sum_probs=22.3

Q ss_pred             cCHHHHHHHH-HccCCeee---CceeEEeeC
Q psy13491          3 AKRDEVQTAM-AMDESLFR---GRQIKVNPK   29 (69)
Q Consensus         3 a~~~sv~~Al-~Ln~s~fr---GR~IkV~~K   29 (69)
                      +++++++.|| +||+..+.   ++.|+|...
T Consensus       144 ~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a  174 (175)
T 3nmr_A          144 TTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA  174 (175)
T ss_dssp             SSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred             CCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence            5789999999 59998776   499999753

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A

Probab=91.86  E-value=0.035  Score=32.24  Aligned_cols=27  Identities=22%  Similarity=0.420  Sum_probs=22.6

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCc
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KR   30 (69)
                      ++++++++||+ |+.+|.|+.|.|...-
T Consensus        58 ~~~~~a~~Ai~-~~~~~~g~~l~v~~a~   84 (102)
T 2xs2_A           58 YNDVDVQKIVE-SQINFHGKKLKLGPAI   84 (102)
T ss_dssp             SSCCCHHHHTT-CCCEETTEECEEEEEE
T ss_pred             CCHHHHHHHHh-CCCeECCEEEEEEECC
Confidence            46778999999 9999999999986543

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=91.81  E-value=0.12  Score=36.31  Aligned_cols=31  Identities=13%  Similarity=0.148  Sum_probs=25.3

Q ss_pred             cCHHHHHHHHH-ccCCee------------eCceeEEeeCccCC
Q psy13491          3 AKRDEVQTAMA-MDESLF------------RGRQIKVNPKRTNR   33 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~f------------rGR~IkV~~KRtN~   33 (69)
                      ++.++|+.|++ ||+++|            .|+.|.|.......
T Consensus       187 ~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~p  230 (240)
T 3u1l_A          187 KYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDP  230 (240)
T ss_dssp             SSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred             CCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCC
Confidence            47899999995 999999            99999999887643

>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}

Probab=88.06  E-value=0.33  Score=32.32  Aligned_cols=26  Identities=12%  Similarity=0.120  Sum_probs=21.8

Q ss_pred             HHHHHH---ccCCeeeCceeEEeeCccCC
Q psy13491          8 VQTAMA---MDESLFRGRQIKVNPKRTNR   33 (69)
Q Consensus         8 v~~Al~---Ln~s~frGR~IkV~~KRtN~   33 (69)
                      +..||+   ||++.|.|+.|+|...+.++
T Consensus        69 A~kAi~~~~lng~~I~Gr~irV~ln~~g~   97 (136)
T 2j8a_A           69 AFSAVRKHESSGCFIMGFKFEVILNKHSI   97 (136)
T ss_dssp             HHHHHHHTTTTCEEETTEEEEEEECCTTH
T ss_pred             HHHHHHHhhhcCCeecCcEEEEEECcccH
Confidence            788875   89999999999999776653

>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.59  E-value=1.4  Score=26.61  Aligned_cols=30  Identities=13%  Similarity=0.041  Sum_probs=23.1

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCccCC
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKRTNR   33 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRtN~   33 (69)
                      ++++++++||+. ...+.+++|+|...+...
T Consensus        62 ~~~~~A~~Ai~~-~~~~~g~~l~V~~a~~~~   91 (100)
T 2d9o_A           62 ATVKAAELAVQN-EVGLVDNPLKISWLEGQP   91 (100)
T ss_dssp             SCHHHHHHHHHT-CCBCSSSBCEEECSSCCC
T ss_pred             CCHHHHHHHHHh-cCCCCCCeEEEEEccCCC
Confidence            578899999973 344789999998776554

>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.32  E-value=0.61  Score=27.69  Aligned_cols=22  Identities=14%  Similarity=0.045  Sum_probs=14.0

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEE
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKV   26 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV   26 (69)
                      +++++|++||+ |+  .+.|+.|.|
T Consensus        60 ~~~~~a~~Ai~~~~--~~~G~~~~~   82 (114)
T 2dnl_A           60 QEESSVQALIDACL--EEDGKLYLC   82 (114)
T ss_dssp             SSHHHHHHHHHHSE--EETTEEEEE
T ss_pred             CCHHHHHHHHHhhh--hcCCcEEEe
Confidence            57899999995 62  244444433

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=86.01  E-value=0.68  Score=27.99  Aligned_cols=29  Identities=14%  Similarity=0.190  Sum_probs=23.0

Q ss_pred             cCHHHHHHHHH-ccCCeee---CceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MDESLFR---GRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~fr---GR~IkV~~KRt   31 (69)
                      ++++++++||+ ||+..+.   ++.|.|.+...
T Consensus        55 ~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~   87 (175)
T 3nmr_A           55 YTRKAALEAQNALHNMKVLPGMHHPIQMKPADS   87 (175)
T ss_dssp             SSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGG
T ss_pred             CCHHHHHHHHHHhcCcEEccCCccceEEccccc
Confidence            57899999995 9998876   67788876553

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=84.96  E-value=0.8  Score=30.23  Aligned_cols=21  Identities=0%  Similarity=0.230  Sum_probs=18.6

Q ss_pred             cCHHHHHHHHH-ccCCeeeCce
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQ   23 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~   23 (69)
                      ++.+++.+||+ ||++++.|+.
T Consensus       173 ~~~~~A~~Ai~~lng~~~~g~~  194 (205)
T 3tyt_A          173 DSKSDALETLGFLNHYQMKNPN  194 (205)
T ss_dssp             SSHHHHHHHHHHHTTCEECCSS
T ss_pred             CCHHHHHHHHHHhCCCCccCCC
Confidence            57899999995 9999999984

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=83.50  E-value=0.78  Score=30.75  Aligned_cols=29  Identities=21%  Similarity=0.359  Sum_probs=22.6

Q ss_pred             cCHHHHHHHHH-ccCCeee----CceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MDESLFR----GRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~fr----GR~IkV~~KRt   31 (69)
                      ++.+++.+||. ||+..|-    +++|.|.+...
T Consensus       145 ~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~  178 (261)
T 3sde_A          145 AAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQ  178 (261)
T ss_dssp             SSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCC
T ss_pred             CCHHHHHHHHHHhcCCeEEecCCCceEEEeeccc
Confidence            57899999995 8655554    99999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	69
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	97.81
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	97.55
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	97.53
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	97.51
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	97.48
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	97.45
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	97.41
d1fjeb1	91	Nucleolin {Golden hamster (Mesocricetus auratus) [	97.38
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	97.37
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	97.33
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	97.31
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	97.29
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	97.29
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	97.28
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	97.21
d2cpya1	103	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	97.2
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	97.19
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	97.18
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	97.14
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	97.13
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	97.06
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	97.06
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	97.05
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	97.03
d1u2fa_	90	Splicing factor U2AF 65 KDa subunit {Human (Homo s	97.03
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	97.02
d1weza_	102	Heterogeneous nuclear ribonucleoprotein H' {Human	97.02
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	97.01
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	97.01
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	97.01
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	96.99
d1wi8a_	104	Eukaryotic translation initiation factor 4B {Human	96.99
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	96.99
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	96.99
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	96.97
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	96.95
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	96.92
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	96.91
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	96.9
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	96.9
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	96.88
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	96.88
d2cq4a1	101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	96.86
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	96.8
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	96.79
d1wwha1	81	Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090	96.79
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	96.76
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	96.76
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	96.74
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	96.71
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	96.7
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	96.69
d1wg5a_	104	Heterogeneous nuclear ribonucleoprotein H' {Human	96.63
d1x4ba1	103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	96.63
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	96.61
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	96.6
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	U2	96.6
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	96.59
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	96.59
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	96.59
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	96.57
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	96.56
d1wela1	112	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	96.45
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	96.44
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	96.44
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	96.39
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	96.25
d1o0pa_	104	Splicing factor U2AF 65 KDa subunit {Human (Homo s	96.22
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	96.05
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	95.79
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	95.78
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	95.48
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	95.47
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	95.42
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	95.11
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	94.73
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	94.6
d1x4da1	89	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	94.56
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	94.5
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	94.07
d1ufwa_	95	Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]	93.94
d2cq1a1	88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	92.41
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	91.99
d2disa1	96	Hypothetical protein FLJ20273 {Human (Homo sapiens	90.94
d1wexa_	104	Heterogeneous nuclear ribonucleoprotein L-like {Mo	90.39
d2cq2a1	101	Alkylation repair AlkB homolog 8, ALKBH8 {Human (H	83.24

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=9.1e-06  Score=47.14  Aligned_cols=33  Identities=24%  Similarity=0.399  Sum_probs=29.6

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRPG   35 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~PG   35 (69)
                      ++++++++||+ ||+.+|.||+|+|..++++.|-
T Consensus        66 ~~~~~a~~Ai~~l~g~~~~gr~i~V~~a~~~~p~   99 (101)
T d2cpea1          66 EDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPM   99 (101)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEECSSCCCCS
T ss_pred             cCHHHHHHHHHHhCCCEECCEEEEEEEcCCCCCC
Confidence            57899999995 9999999999999999987763

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.55  E-value=3.3e-05  Score=43.57  Aligned_cols=30  Identities=20%  Similarity=0.411  Sum_probs=26.8

Q ss_pred             cCHHHHHHHH-HccCCeeeCceeEEeeCccC
Q psy13491          3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRtN   32 (69)
                      .++++|++|+ +||+++|.|+.|+|..+.++
T Consensus        41 ~~~~~A~~Ai~~ln~~~~~g~~l~V~~a~~d   71 (75)
T d1wi6a1          41 LNGEQAEAAINTFHQSRLRERELSVQLQPTD   71 (75)
T ss_dssp             SSHHHHHHHHHHHTTEESSSCEEEEEECCST
T ss_pred             CCHHHHHHHHHHhCCccCCCCEEEEEEeCCC
Confidence            5789999999 49999999999999988764

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=4.2e-05  Score=44.40  Aligned_cols=29  Identities=17%  Similarity=0.284  Sum_probs=25.8

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt   31 (69)
                      ++++++++||+ ||+++|.|++|+|...+.
T Consensus        61 ~~~e~a~~Ai~~l~g~~~~g~~l~V~~a~~   90 (95)
T d1x4aa1          61 EDPRDAEDAVYGRDGYDYDGYRLRVEFPRS   90 (95)
T ss_dssp             SCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEeccC
Confidence            57899999995 999999999999987664

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.51  E-value=3.5e-05  Score=42.39  Aligned_cols=26  Identities=8%  Similarity=0.141  Sum_probs=23.8

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEee
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNP   28 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~   28 (69)
                      .+++++++||+||+.+|.|++|+|..
T Consensus        49 ~~~~~a~~al~~~~~~l~gr~i~V~~   74 (75)
T d2msta_          49 ESEDIVEKVCEIHFHEINNKMVECKK   74 (75)
T ss_dssp             SCHHHHHHHHHCSSCCBTTBCCEEEE
T ss_pred             CCHHHHHHHHhcCCCEECCeEEEEEE
Confidence            47899999999999999999999964

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=4.7e-05  Score=42.42  Aligned_cols=26  Identities=15%  Similarity=0.219  Sum_probs=23.7

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEee
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNP   28 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~   28 (69)
                      +++|++++||+||+.+|.||+|+|..
T Consensus        52 ~~~e~~~~al~~~~~~l~Gr~i~V~~   77 (79)
T d1l3ka2          52 DDHDSVDKIVIQKYHTVNGHNCEVRK   77 (79)
T ss_dssp             SSHHHHHHHHHCSCCEETTEECEEEE
T ss_pred             cCHHHHHHHHHhCCCEECCEEEEEEE
Confidence            57899999999999999999999963

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=0.0001  Score=42.44  Aligned_cols=31  Identities=23%  Similarity=0.424  Sum_probs=27.5

Q ss_pred             cCHHHHHHHH-HccCCeeeCceeEEeeCccCC
Q psy13491          3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRTNR   33 (69)
Q Consensus         3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRtN~   33 (69)
                      ++++++++|| +||+.+|.|++|+|....++-
T Consensus        48 ~~~~~A~~Ai~~ln~~~~~G~~l~V~~a~~~~   79 (88)
T d1wg1a_          48 LNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA   79 (88)
T ss_dssp             SCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEEcCCCC
Confidence            5789999999 599999999999999887654

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=2.9e-05  Score=44.59  Aligned_cols=29  Identities=17%  Similarity=0.373  Sum_probs=25.0

Q ss_pred             cCHHHHHHHH-HccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRt   31 (69)
                      ++++++++|| +||+++|.|+.|+|...+.
T Consensus        43 ~~~~~a~~Ai~~l~g~~~~g~~i~v~~~~~   72 (87)
T d3begb1          43 VRKEDMTYAVRKLDNTKFRSHEGETAYIRV   72 (87)
T ss_dssp             SSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred             CCHHHHHHHHHHhCCCEECCcEeEEeEEec
Confidence            5789999999 5999999999999876543

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=97.38  E-value=6.1e-05  Score=43.79  Aligned_cols=29  Identities=14%  Similarity=0.315  Sum_probs=26.1

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRt   31 (69)
                      .++++++.||+||+.++.|++|+|..+++
T Consensus        62 ~~~e~a~~Al~~~g~~~~g~~i~V~~ak~   90 (91)
T d1fjeb1          62 ESAEDLEKALELTGLKVFGNEIKLEKPKG   90 (91)
T ss_dssp             SSHHHHHHHHHGGGEEETTEEEEEECCCC
T ss_pred             CCHHHHHHHHhcCCcEECCEEEEEEecCC
Confidence            47899999999999999999999987653

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.37  E-value=7.1e-05  Score=42.79  Aligned_cols=28  Identities=29%  Similarity=0.493  Sum_probs=25.1

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCc
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KR   30 (69)
                      ++.+++++||+||+++|.|++|+|....
T Consensus        56 ~~~~~a~~Al~~n~~~~~gr~l~V~~a~   83 (86)
T d2ghpa3          56 ENKDSAERALQMNRSLLGNREISVSLAD   83 (86)
T ss_dssp             SSHHHHHHHGGGTTEEETTEEEEEEECC
T ss_pred             CCHHHHHHHHhcCCCEECCEEEEEEEcC
Confidence            4789999999999999999999998654

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.33  E-value=0.00019  Score=41.70  Aligned_cols=31  Identities=26%  Similarity=0.453  Sum_probs=27.5

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNR   33 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~   33 (69)
                      +++++++.||+ ||+.+|.|+.|+|.++....
T Consensus        58 ~~~~~a~~A~~~l~g~~~~gr~i~V~~a~~~~   89 (99)
T d1whwa_          58 MFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKK   89 (99)
T ss_dssp             SSHHHHHHHHHHTTTEESSSCEEEEEECCCCS
T ss_pred             CCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence            57899999995 99999999999999887654

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.0001  Score=41.46  Aligned_cols=30  Identities=10%  Similarity=0.360  Sum_probs=26.5

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN   32 (69)
                      +++++++.||+ ||+..|.|+.|+|..++.|
T Consensus        50 ~~~~~a~~ai~~l~g~~~~gr~i~v~~a~~d   80 (80)
T d1cvja1          50 QQPADAERALDTMNFDVIKGKPVRIMWSQRD   80 (80)
T ss_dssp             SSHHHHHHHHTTSTTCEETTEECEEEECCCC
T ss_pred             CCHHHHHHHHHHcCCCEECCEEEEEEEeCCC
Confidence            57899999995 9999999999999987653

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.29  E-value=7.6e-05  Score=43.10  Aligned_cols=25  Identities=16%  Similarity=0.450  Sum_probs=22.9

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEe
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVN   27 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~   27 (69)
                      ++++++++||+ |||++|.|+.|+|+
T Consensus        64 ~~~~~A~~Ai~~lng~~~~gr~lkvS   89 (89)
T d2cpia1          64 IRSEDALRAIQCVNNVVVDGRTLKAS   89 (89)
T ss_dssp             SSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred             ccchhHHHHHHHhCCCEECCEEEEEC
Confidence            57899999995 99999999999985

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.00012  Score=40.78  Aligned_cols=29  Identities=17%  Similarity=0.304  Sum_probs=25.8

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt   31 (69)
                      .+++++++|++ ||+.+|.|+.|+|..++.
T Consensus        52 ~~~~~a~~a~~~l~g~~~~g~~l~v~~AkP   81 (82)
T d1fxla1          52 IDPKDAEKAINTLNGLRLQTKTIKVSYARP   81 (82)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence            57899999995 999999999999998763

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.28  E-value=9.3e-05  Score=41.59  Aligned_cols=26  Identities=19%  Similarity=0.231  Sum_probs=24.0

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEee
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNP   28 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~   28 (69)
                      +++++|++||+||+.+|.|++|+|..
T Consensus        48 ~~~~~a~~Al~~~~~~i~g~~i~V~~   73 (75)
T d2ghpa2          48 ARYDGALAAITKTHKVVGQNEIIVSH   73 (75)
T ss_dssp             SSHHHHHHHHTTTTCEETTEECEEEE
T ss_pred             cchHHhHHHHHhcCcEECCEEEEEEE
Confidence            57899999999999999999999974

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00014  Score=41.60  Aligned_cols=29  Identities=3%  Similarity=0.059  Sum_probs=26.5

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRt   31 (69)
                      +++++|++||++|+.+|.|++|+|..|.+
T Consensus        55 ~~~e~a~~al~~~~~~~~g~~l~v~~~~d   83 (85)
T d1zh5a2          55 DSIESAKKFVETPGQKYKETDLLILFKDD   83 (85)
T ss_dssp             SCHHHHHHHHTCCCCEETTEECEEEEGGG
T ss_pred             cCHHHHHHHHHHCCCEECCEEEEEEEcCC
Confidence            57899999999999999999999988765

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00012  Score=42.73  Aligned_cols=27  Identities=15%  Similarity=0.277  Sum_probs=24.8

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeC
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPK   29 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~K   29 (69)
                      .++++|++||+||++.|.||.|.|.+.
T Consensus        58 ~s~~~a~~Al~~n~~~i~gr~i~V~~~   84 (103)
T d2cpya1          58 KNEDDARKSERLHRKKLNGREAFVHVV   84 (103)
T ss_dssp             SSHHHHHHHGGGCSEEETTEEEEEEEE
T ss_pred             CCHHHHHHHHhcCCCeECCcEEEEEEC
Confidence            578999999999999999999999864

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00035  Score=41.00  Aligned_cols=29  Identities=17%  Similarity=0.333  Sum_probs=26.1

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt   31 (69)
                      +++++|++||+ ||+.+|.|+.|+|...+.
T Consensus        58 ~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~   87 (98)
T d1wf2a_          58 VNERNARAAVAGEDGRMIAGQVLDINLAAE   87 (98)
T ss_dssp             SSHHHHHHHHHTTTTCEETTEECEEEETTS
T ss_pred             CCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            57899999995 999999999999998764

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.18  E-value=0.00013  Score=42.97  Aligned_cols=29  Identities=17%  Similarity=0.423  Sum_probs=25.6

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt   31 (69)
                      ++++++++||+ ||+++|.|+.|+|...+.
T Consensus        58 ~~~~~a~~Ai~~lng~~~~g~~i~v~~~~~   87 (98)
T d1wg4a_          58 LRKEDMEYALRKLDDTKFRSHEGETSYIRV   87 (98)
T ss_dssp             SSHHHHHHHHHHHSSEEEECTTSCEEEEEE
T ss_pred             CCHHHHHHHHHHhCCCEeCCeEEEEEEEec
Confidence            57899999995 999999999999987654

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=97.14  E-value=0.00022  Score=39.77  Aligned_cols=28  Identities=21%  Similarity=0.344  Sum_probs=25.3

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KR   30 (69)
                      +++++|+.||. ||+..|.|+.|+|..++
T Consensus        52 ~~~~~A~~ai~~lng~~~~g~~l~v~~a~   80 (82)
T d1b7fa1          52 TSEMDSQRAIKVLNGITVRNKRLKVSYAR   80 (82)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence            57899999995 99999999999998764

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00015  Score=41.52  Aligned_cols=30  Identities=17%  Similarity=0.352  Sum_probs=26.5

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN   32 (69)
                      ++++++++||+ ||+.+|.|+.|+|....+.
T Consensus        56 ~~~~~A~~Ai~~l~g~~~~g~~i~V~~a~~~   86 (89)
T d1cvja2          56 ETQEAAERAIEKMNGMLLNDRKVFVGRFKSR   86 (89)
T ss_dssp             SCHHHHHHHTTSSSEEEETTEEEEEEECCCT
T ss_pred             CCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence            57899999995 9999999999999987643

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.06  E-value=0.00019  Score=41.75  Aligned_cols=32  Identities=13%  Similarity=-0.010  Sum_probs=27.9

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNRP   34 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~P   34 (69)
                      .++++|+.||+ ||+++|.|+.|.|....++..
T Consensus        54 ~~~~~A~~A~~~lng~~~~gr~l~v~~a~~~~~   86 (111)
T d1whxa_          54 LEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVF   86 (111)
T ss_dssp             SCHHHHHHHHHHHTTCBSSSSBCEEEEEETTTT
T ss_pred             cCHHHHHHHHHHHcCCccCCCeEEEEECCCCcc
Confidence            57899999995 999999999999998877653

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.00022  Score=40.00  Aligned_cols=28  Identities=25%  Similarity=0.359  Sum_probs=25.4

Q ss_pred             cCHHHHHHHH-HccCCeeeCceeEEeeCc
Q psy13491          3 AKRDEVQTAM-AMDESLFRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KR   30 (69)
                      ++++++++|+ +||+.+|.|++|+|...+
T Consensus        47 ~~~~~A~~Ai~~lng~~~~g~~l~V~~a~   75 (79)
T d2bz2a1          47 EKMESADQAVAELNGTQVESVQLKVNIAR   75 (79)
T ss_dssp             SSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred             cccHHHHHHHHHhCCCEECCEEEEEEEec
Confidence            5789999999 599999999999998876

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00025  Score=41.65  Aligned_cols=29  Identities=24%  Similarity=0.295  Sum_probs=25.8

Q ss_pred             cCHHHHHHHH-HccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRt   31 (69)
                      +++++++.|| +||+.+|.|++|+|...+.
T Consensus        68 ~~~~~A~~Ai~~lng~~~~g~~i~V~~a~~   97 (102)
T d2cpza1          68 DNPVSAQAAIQSMNGFQIGMKRLKVQLKRS   97 (102)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEEeCC
Confidence            5789999999 5999999999999987664

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.00028  Score=40.79  Aligned_cols=29  Identities=24%  Similarity=0.387  Sum_probs=25.5

Q ss_pred             cCHHHHHHHH-HccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAM-AMDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KRt   31 (69)
                      .+++++++|| +||++.|.|++|+|..+..
T Consensus        59 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~A~~   88 (93)
T d1x5ua1          59 LSEEDADYAIKIMDMIKLYGKPIRVNKASA   88 (93)
T ss_dssp             SSHHHHHHHHHHSSSCBCSSCBCEEEETTT
T ss_pred             CCHHHHHHHHHHcCCCEECCEEEEEEEcCC
Confidence            5789999999 4999999999999987654

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=2.5e-05  Score=44.77  Aligned_cols=29  Identities=31%  Similarity=0.538  Sum_probs=24.0

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRt   31 (69)
                      +++|+++.|++||+++|.|+.|+|.....
T Consensus        56 ~~~e~a~~a~~l~g~~~~Gr~l~V~r~k~   84 (90)
T d1u2fa_          56 RSVDETTQAMAFDGIIFQGQSLKIRRPHD   84 (90)
T ss_dssp             SSCTTTTTGGGGSSCCSSSSCCCCBCTTC
T ss_pred             CCHHHHHHHHhhCCcEECCEEEEECCCCC
Confidence            46678899999999999999999964333

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.02  E-value=0.00026  Score=39.63  Aligned_cols=27  Identities=15%  Similarity=0.329  Sum_probs=24.2

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPK   29 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~K   29 (69)
                      ++++++++||+ ||+++|.|++|+|...
T Consensus        49 ~~~~~A~~Ai~~l~g~~l~g~~l~V~~a   76 (78)
T d1no8a_          49 ERKADALKAMKQYNGVPLDGRPMNIQLV   76 (78)
T ss_dssp             SCHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence            57899999995 9999999999999764

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00013  Score=42.76  Aligned_cols=27  Identities=22%  Similarity=0.318  Sum_probs=24.1

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeC
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPK   29 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~K   29 (69)
                      +++++|++||+||+++|.||.|+|...
T Consensus        63 ~~~~~a~~Al~~~~~~i~gR~I~V~~s   89 (102)
T d1weza_          63 ATHEDAVAAMAKDKANMQHRYVELFLN   89 (102)
T ss_dssp             SSSHHHHHHHTTSSCCSSSSCCEEEEE
T ss_pred             CCHHHHHHHHHcCCCEECCEEEEEEEc
Confidence            467899999999999999999999753

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.01  E-value=0.00037  Score=39.16  Aligned_cols=27  Identities=19%  Similarity=0.363  Sum_probs=24.3

Q ss_pred             cCHHHHHHHH-HccCCeeeCceeEEeeC
Q psy13491          3 AKRDEVQTAM-AMDESLFRGRQIKVNPK   29 (69)
Q Consensus         3 a~~~sv~~Al-~Ln~s~frGR~IkV~~K   29 (69)
                      +++++++.|| .||+++|.|+.|+|...
T Consensus        51 ~~~~~A~~A~~~~~~~~~~g~~i~V~~a   78 (85)
T d2cpfa1          51 KKPEQAQKALKQLQGHTVDGHKLEVRIS   78 (85)
T ss_dssp             SSHHHHHHHHHHSTTCEETTEECEEECS
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence            5789999999 49999999999999864

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00033  Score=39.19  Aligned_cols=28  Identities=25%  Similarity=0.260  Sum_probs=25.2

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KR   30 (69)
                      +++++++.||+ ||++.|.|++|+|.+..
T Consensus        49 ~~~~~a~~Ai~~~~g~~~~gr~l~v~~a~   77 (83)
T d1x5ta1          49 ASFDASDAAIEAMNGQYLCNRPITVSYAF   77 (83)
T ss_dssp             SSHHHHHHHHHTTTTCEETTEECEEEESC
T ss_pred             CCHHHHHHHHHhCCCcEECCEEEEEEEec
Confidence            57899999995 99999999999998754

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.01  E-value=0.00032  Score=39.13  Aligned_cols=28  Identities=4%  Similarity=0.208  Sum_probs=24.8

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KR   30 (69)
                      ++++++++||+ ||++.|.|++|+|...+
T Consensus        51 ~~~e~A~~Ai~~l~g~~~~g~~i~V~~a~   79 (81)
T d2ghpa1          51 TSKEDARYCVEKLNGLKIEGYTLVTKVSN   79 (81)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence            57899999995 99999999999997654

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00038  Score=40.07  Aligned_cols=30  Identities=20%  Similarity=0.394  Sum_probs=26.3

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN   32 (69)
                      +++++++.||+ ||+.+|.|++|+|...+..
T Consensus        59 ~~~~~a~~Ai~~l~~~~~~g~~l~V~~A~~r   89 (93)
T d2cq3a1          59 ENSADADRAREKLHGTVVEGRKIEVNNATAR   89 (93)
T ss_dssp             SCHHHHHHHHHHHTTCEETTEECEEEECCSS
T ss_pred             CCHHHHHHHHHHcCCCEECCEEEEEEecCcC
Confidence            57899999995 9999999999999977643

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.0003  Score=40.87  Aligned_cols=28  Identities=18%  Similarity=0.398  Sum_probs=24.5

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCc
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KR   30 (69)
                      +++++|++|++||+.+|.|++|+|....
T Consensus        65 ~~~e~a~~~~~~~~~~~~gr~l~V~~a~   92 (104)
T d1wi8a_          65 EDLDSLLSALSLNEESLGNKRIRVDVAD   92 (104)
T ss_dssp             SSHHHHHHHHGGGTCEETTEECEEEECC
T ss_pred             CCHHHHHHHHHcCCCEECCEEEEEEECC
Confidence            4678899999999999999999998654

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00033  Score=40.83  Aligned_cols=30  Identities=10%  Similarity=0.245  Sum_probs=26.2

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN   32 (69)
                      .+++++++||+ ||+++|.|++|+|...+.+
T Consensus        62 ~~~~~A~~Ai~~l~~~~i~g~~l~v~~ak~~   92 (96)
T d1x4ga1          62 STHESAAHAIVSVNGTTIEGHVVKCYWGKES   92 (96)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence            47899999995 9999999999999987653

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.99  E-value=0.00091  Score=40.54  Aligned_cols=29  Identities=17%  Similarity=0.218  Sum_probs=25.8

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt   31 (69)
                      ++.++|+.||+ ||+.+|.|+.|+|..++.
T Consensus        92 ~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~  121 (139)
T d1u6fa1          92 QSGSSAQQAIAGLNGFNILNKRLKVALAAS  121 (139)
T ss_dssp             SSHHHHHHHHHHTTTEECSSCEEEEEESSC
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence            57899999996 999999999999988753

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00035  Score=40.27  Aligned_cols=29  Identities=7%  Similarity=0.181  Sum_probs=25.9

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt   31 (69)
                      +++++|+.||+ ||+.+|.|+.|+|...++
T Consensus        68 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~ak~   97 (102)
T d2cpxa1          68 PNKEIAWQALHLVNGYKLYGKILVIEFGKN   97 (102)
T ss_dssp             SSHHHHHHHHHHSTTCBCSSCBCEEEECCC
T ss_pred             ccHHHHHHHHHHhCCCEECCEEEEEEeCCC
Confidence            57899999995 999999999999987764

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00025  Score=39.85  Aligned_cols=24  Identities=25%  Similarity=0.415  Sum_probs=22.1

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEE
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKV   26 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV   26 (69)
                      ++.++|++||+ ||+.+|.|++|+|
T Consensus        59 ~~~~~A~~Ai~~l~g~~~~gr~i~V   83 (83)
T d2cqca1          59 ENVDDAKEAKERANGMELDGRRIRV   83 (83)
T ss_dssp             SSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred             CCHHHHHHHHHHcCCCEECCEEeEC
Confidence            57899999995 9999999999998

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00049  Score=39.69  Aligned_cols=29  Identities=17%  Similarity=0.276  Sum_probs=25.7

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt   31 (69)
                      .++++++.||+ ||+.++.|++|+|...+.
T Consensus        57 ~~~~~A~~Ai~~l~g~~~~gr~i~V~~a~~   86 (93)
T d1h2vz_          57 YSRADAENAMRYINGTRLDDRIIRTDWDAG   86 (93)
T ss_dssp             SSHHHHHHHHHHTTTSEETTEECEEEEESC
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence            47899999995 999999999999987653

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.00049  Score=39.22  Aligned_cols=29  Identities=31%  Similarity=0.477  Sum_probs=25.8

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt   31 (69)
                      +++++|++||+ ||+..|.|+.|+|...+.
T Consensus        55 ~~~~~A~~ai~~l~~~~i~g~~l~v~~a~p   84 (89)
T d2cqba1          55 ELAEDAAAAIDNMNESELFGRTIRVNLAKP   84 (89)
T ss_dssp             SSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred             CCHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence            57899999995 999999999999988764

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00044  Score=39.16  Aligned_cols=31  Identities=10%  Similarity=0.231  Sum_probs=26.8

Q ss_pred             cCHHHHHHHH-HccCCee-eCceeEEeeCccCC
Q psy13491          3 AKRDEVQTAM-AMDESLF-RGRQIKVNPKRTNR   33 (69)
Q Consensus         3 a~~~sv~~Al-~Ln~s~f-rGR~IkV~~KRtN~   33 (69)
                      +++++|.+|+ +||+..+ .|+.|+|...+++|
T Consensus        56 ~~~~~A~~A~~~l~~~~i~~g~~l~v~~sk~~i   88 (88)
T d2adca2          56 GSVEEAVQALIDLHNHDLGENHHLRVSFSKSTI   88 (88)
T ss_dssp             SSHHHHHHHHHHHTTCBSSSSCBCEEEECSSCC
T ss_pred             CCHHHHHHHHHhccCCEecCCCEEEEEeCCCCC
Confidence            5789999999 5999877 69999999888775

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00046  Score=39.40  Aligned_cols=28  Identities=14%  Similarity=0.211  Sum_probs=25.2

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KR   30 (69)
                      ++.++++.||+ ||+..|.|+.|+|..++
T Consensus        58 ~~~~~A~~Ai~~l~g~~~~g~~i~v~~ak   86 (90)
T d2cq0a1          58 HRREDAARAIAGVSGFGYDHLILNVEWAK   86 (90)
T ss_dssp             SSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEeee
Confidence            47899999996 99999999999998765

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.88  E-value=0.00021  Score=40.31  Aligned_cols=26  Identities=12%  Similarity=0.173  Sum_probs=23.7

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEee
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNP   28 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~   28 (69)
                      ++++++++||++|+.++.||.|+|..
T Consensus        50 ~~~~~a~~al~~~~~~i~Gr~i~V~~   75 (77)
T d1uawa_          50 MDQAGVDKVLAQSRHELDSKTIDPKV   75 (77)
T ss_dssp             CCTTHHHHHHHTTTCCCSSCCCEEEE
T ss_pred             CCHHHHHHHHHcCCCEECCeEEEEEE
Confidence            57889999999999999999999975

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00032  Score=39.09  Aligned_cols=25  Identities=20%  Similarity=0.353  Sum_probs=23.1

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEe
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVN   27 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~   27 (69)
                      ++++++++||++|++.|.|+.|.|.
T Consensus        49 ~~~~~a~~Al~~~~~~l~Gr~i~V~   73 (75)
T d1hd0a_          49 KESESVDKVMDQKEHKLNGKVIDPK   73 (75)
T ss_dssp             SSHHHHHHHHHTCCCCBTTBCCEEC
T ss_pred             CCHHHHHHHHhcCCCEECCCEEEee
Confidence            5789999999999999999999994

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00019  Score=42.47  Aligned_cols=27  Identities=19%  Similarity=0.228  Sum_probs=24.1

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeC
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPK   29 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~K   29 (69)
                      +++++|++||+||+..|.|+.|+|.+.
T Consensus        68 ~~~e~a~~A~~l~g~~~~G~~l~V~~a   94 (101)
T d2cq4a1          68 CEIQSVPLAIGLTGQRLLGVPIIVQAS   94 (101)
T ss_dssp             SCGGGHHHHHHHTTEEETTEEEEEEEH
T ss_pred             CCHHHHHHHHHHCCCEECCEEEEEEEC
Confidence            467899999999999999999999753

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.80  E-value=0.00056  Score=38.43  Aligned_cols=26  Identities=23%  Similarity=0.417  Sum_probs=23.6

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEee
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNP   28 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~   28 (69)
                      ++++++++||+ ||+..+.||+|+|..
T Consensus        59 ~~~e~a~~Ai~~l~~~~l~gr~i~v~l   85 (86)
T d2cqpa1          59 ESRDEATAAVIDLNDRPIGSRKVKLVL   85 (86)
T ss_dssp             SCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred             cCcHHHHHHHHHcCCCEECCEEEEEEE
Confidence            57899999995 999999999999975

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00064  Score=38.61  Aligned_cols=27  Identities=26%  Similarity=0.321  Sum_probs=24.2

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeC
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPK   29 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~K   29 (69)
                      ++++++++||++|+..|.|+.|+|..+
T Consensus        56 ~~~~~a~~ai~~~~~~i~Gr~i~V~~A   82 (84)
T d1l3ka1          56 ATVEEVDAAMNARPHKVDGRVVEPKRA   82 (84)
T ss_dssp             SSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred             cCHHHHHHHHHhCCCEECCEEEEEEee
Confidence            578999999999999999999999654

>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleoporin 35
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.79  E-value=0.00057  Score=39.37  Aligned_cols=28  Identities=21%  Similarity=0.311  Sum_probs=24.1

Q ss_pred             cCHHHHHHHHHccCCeeeCce-eEEeeCc
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQ-IKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~-IkV~~KR   30 (69)
                      +++++|++||+||+++|.|+. |.|.|..
T Consensus        47 ~~~~~A~~Al~~nG~~~~g~~~vgV~~~~   75 (81)
T d1wwha1          47 QSKLQARKALSKDGRIFGESIMIGVKPCI   75 (81)
T ss_dssp             SSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred             cccHHHHHHHhcCCCeECCcEEEEEEeCC
Confidence            589999999999999999995 5687654

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.00039  Score=39.44  Aligned_cols=28  Identities=36%  Similarity=0.533  Sum_probs=24.8

Q ss_pred             cCHHHHHHHH-HccCCeeeCceeEEeeCc
Q psy13491          3 AKRDEVQTAM-AMDESLFRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al-~Ln~s~frGR~IkV~~KR   30 (69)
                      +++++++.|| .||+..|.|+.|+|....
T Consensus        55 ~~~~~a~~Ai~~l~~~~~~g~~l~V~~a~   83 (90)
T d1x5sa1          55 ENIDDAKDAMMAMNGKSVDGRQIRVDQAG   83 (90)
T ss_dssp             SSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred             CCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence            5789999999 499999999999997654

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.76  E-value=0.00059  Score=38.87  Aligned_cols=28  Identities=14%  Similarity=0.157  Sum_probs=24.7

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KR   30 (69)
                      +++++++.||. ||+++|.|+.|+|...-
T Consensus        57 ~~~~~A~~A~~~lng~~l~g~~l~V~~a~   85 (88)
T d1rk8a_          57 ETHKQALAAKEALNGAEIMGQTIQVDWCF   85 (88)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred             CCHHHHHHHHHHcCCCEECCEEEEEEEec
Confidence            57899999995 99999999999998653

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00068  Score=38.07  Aligned_cols=29  Identities=10%  Similarity=0.217  Sum_probs=24.9

Q ss_pred             cCHHHHHHHHH-ccCC-eeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MDES-LFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s-~frGR~IkV~~KRt   31 (69)
                      ++++++++||+ ||+. +|.|+.|+|....+
T Consensus        45 ~~~~~A~~Ai~~lng~~~~~G~~i~V~~a~~   75 (80)
T d2cqha1          45 PDQNWAIRAIETLSGKVELHGKIMEVDYSVS   75 (80)
T ss_dssp             SCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred             CCHHHHHHHHHHhCCCeEECCEEEEEEEcCC
Confidence            57899999995 9996 69999999987654

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.00068  Score=38.66  Aligned_cols=28  Identities=25%  Similarity=0.373  Sum_probs=25.2

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KR   30 (69)
                      ++.++|+.||. ||+.+|.|+.|+|....
T Consensus        56 ~~~~~A~~A~~~l~~~~~~g~~i~v~~a~   84 (90)
T d2cqia1          56 YEHRDAAAALAAMNGRKILGKEVKVNWAT   84 (90)
T ss_dssp             SSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred             CCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence            57899999995 99999999999998765

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.00064  Score=39.40  Aligned_cols=29  Identities=21%  Similarity=0.452  Sum_probs=25.9

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt   31 (69)
                      +++++|+.||+ ||+..|.|++|+|.....
T Consensus        48 ~~~~~A~~ai~~lng~~l~g~~l~v~~s~~   77 (109)
T d2adca1          48 ADGNQAQLAMSHLNGHKLHGKPIRITLSKH   77 (109)
T ss_dssp             SCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence            57899999995 999999999999988654

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.0006  Score=40.08  Aligned_cols=27  Identities=26%  Similarity=0.440  Sum_probs=24.5

Q ss_pred             cCHHHHHHHH-HccCCeeeCceeEEeeC
Q psy13491          3 AKRDEVQTAM-AMDESLFRGRQIKVNPK   29 (69)
Q Consensus         3 a~~~sv~~Al-~Ln~s~frGR~IkV~~K   29 (69)
                      ++++++++|+ +||+..|.||+|+|...
T Consensus        65 ~~~e~A~~A~~~lng~~~~gr~i~v~~~   92 (99)
T d2dita1          65 RDPEEADYCIQTLDGRWFGGRQITAQAW   92 (99)
T ss_dssp             SCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred             CCHHHHHHHHHHhCCcEECCEEEEEEEe
Confidence            5789999999 59999999999999864

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.00057  Score=39.93  Aligned_cols=28  Identities=14%  Similarity=0.181  Sum_probs=25.0

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCc
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KR   30 (69)
                      ++++++++||+||++.|.||.|.|.+..
T Consensus        65 ~~~e~a~~a~~~~~~~i~gR~i~V~~~~   92 (104)
T d1wg5a_          65 ASQEIAEKALKKHKERIGHRYIEIFKSS   92 (104)
T ss_dssp             SSHHHHHHHHTTTTCCSSSSCCEEEEEC
T ss_pred             CCHHHHHHHHhhCCCEEcceEEEEEECC
Confidence            5789999999999999999999997554

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.0007  Score=40.11  Aligned_cols=27  Identities=26%  Similarity=0.316  Sum_probs=24.2

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeC
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPK   29 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~K   29 (69)
                      ++.++|++||++|+..|.|+.|+|...
T Consensus        70 ~~~~~a~~al~~~~~~l~G~~i~V~~a   96 (103)
T d1x4ba1          70 SSMAEVDAAMAARPHSIDGRVVEPKRA   96 (103)
T ss_dssp             SSHHHHHHHHTSCSEEETTEEEEEECC
T ss_pred             CCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence            578999999999999999999999643

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.61  E-value=0.00067  Score=40.36  Aligned_cols=31  Identities=16%  Similarity=0.206  Sum_probs=26.7

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCccCC
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRTNR   33 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRtN~   33 (69)
                      +++++|++||+ ||+.+|.|+.|+|...++.-
T Consensus        54 ~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~~~   85 (104)
T d1weya_          54 SNPLSAADARLRLHKTEFLGKEMKLYFAQTLH   85 (104)
T ss_dssp             SSTTHHHHHHHTSTTSEETTEECEEECCCCSS
T ss_pred             CCHHHHHHHHHHhcccccCCCEeEEeecccCC
Confidence            47889999995 99999999999998876543

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.0011  Score=37.86  Aligned_cols=29  Identities=14%  Similarity=0.260  Sum_probs=26.0

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt   31 (69)
                      ++++++++|++ ||+.+|.|+.|.|....+
T Consensus        54 ~~~~~A~~A~~~~~~~~~~g~~l~v~~ak~   83 (91)
T d1nu4a_          54 KEVSSATNALRSMQGFPFYDKPMRIQYAKT   83 (91)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEECSS
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEEeCC
Confidence            57899999995 999999999999997765

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.0006  Score=40.55  Aligned_cols=25  Identities=16%  Similarity=0.518  Sum_probs=22.9

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEe
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVN   27 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~   27 (69)
                      +++++|.+|++ |||.+|.||+|+|.
T Consensus        76 ~~~~~A~~Ai~~lng~~~~gr~i~v~  101 (104)
T d1jmta_          76 RREEDAEKAVIDLNNRWFNGQPIHAE  101 (104)
T ss_dssp             SCHHHHHHHHHHHTTCEETTEECCEE
T ss_pred             echhHHHHHHHHHCCCEECCEEEEEE
Confidence            57899999995 99999999999996

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.00036  Score=40.72  Aligned_cols=28  Identities=4%  Similarity=0.197  Sum_probs=24.6

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KR   30 (69)
                      ++++++++||+ |||.+|.|++|+|.+..
T Consensus        67 ~~~~~A~~Ai~~lng~~i~gr~~~v~~~~   95 (101)
T d1x5oa1          67 ESTEKCEAVIGHFNGKFIKTPPGVSAPTE   95 (101)
T ss_dssp             SCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred             CCHHHHHHHHHHhCCCEECCcCCccCCCC
Confidence            57899999995 99999999999997653

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.00081  Score=39.04  Aligned_cols=28  Identities=21%  Similarity=0.463  Sum_probs=24.9

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KR   30 (69)
                      ++.+++++||+ ||+.+|.|+.|+|....
T Consensus        58 ~~~~~a~~ai~~l~~~~~~g~~i~V~~a~   86 (104)
T d1p1ta_          58 QDQETALSAMRNLNGREFSGRALRVDNAA   86 (104)
T ss_dssp             SCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred             CCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence            57899999995 99999999999998754

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.00087  Score=37.69  Aligned_cols=28  Identities=21%  Similarity=0.476  Sum_probs=24.8

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KR   30 (69)
                      ++++++++||. ||+.+|.|++|+|...+
T Consensus        52 ~~~~~A~~Ai~~l~~~~i~g~~i~V~~ak   80 (86)
T d2cpda1          52 SNREDAVEAMKALNGKVLDGSPIEVTLAK   80 (86)
T ss_dssp             SSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred             CCHHHHHHHHHHcCCCEECCEEEEEEecc
Confidence            57899999995 99999999999998654

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.57  E-value=0.001  Score=38.31  Aligned_cols=31  Identities=10%  Similarity=0.276  Sum_probs=26.6

Q ss_pred             cCHHHHHHHHH-c-cCCeeeCceeEEeeCccCC
Q psy13491          3 AKRDEVQTAMA-M-DESLFRGRQIKVNPKRTNR   33 (69)
Q Consensus         3 a~~~sv~~Al~-L-n~s~frGR~IkV~~KRtN~   33 (69)
                      +++++|+.||+ | |+.+|.|++|+|.....+.
T Consensus        59 ~~~~~A~~Ai~~l~~~~~~~Gr~l~V~~A~~~~   91 (94)
T d2cpha1          59 ITKQDAKKAFNALCHSTHLYGRRLVLEWADSEV   91 (94)
T ss_dssp             SSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCC
T ss_pred             CCHHHHHHHHHHccCCcEECCEEEEEEEcCCCC
Confidence            57899999995 7 8999999999999876653

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=96.56  E-value=0.00087  Score=38.60  Aligned_cols=26  Identities=8%  Similarity=0.215  Sum_probs=23.5

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEee
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNP   28 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~   28 (69)
                      ++.++|++||+ ||+.+|.|++|+|..
T Consensus        61 ~~~~~A~~A~~~l~~~~~~gr~i~V~~   87 (96)
T d1fjca_          61 KSEADAEKNLEEKQGAEIDGRSVSLYY   87 (96)
T ss_dssp             SSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred             CCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence            47899999995 999999999999974

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.00057  Score=40.59  Aligned_cols=26  Identities=19%  Similarity=0.394  Sum_probs=23.4

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEee
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNP   28 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~   28 (69)
                      +++++++.||+||+..|.||.|.|.+
T Consensus        68 ~~~e~a~~al~~~~~~i~gR~i~V~~   93 (112)
T d1wela1          68 RNEADYKAALCRHKQYMGNRFIQVHP   93 (112)
T ss_dssp             SSSHHHHHHHTSCSBCSTTSCBEEEE
T ss_pred             CCHHHHHHHHHcCCCcCCCEEEEEEE
Confidence            46788999999999999999999975

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.44  E-value=0.00076  Score=38.42  Aligned_cols=28  Identities=25%  Similarity=0.364  Sum_probs=24.4

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KR   30 (69)
                      ++++++++||. ||+.+|.|+.|+|..+-
T Consensus        52 ~~~~~A~~A~~~l~g~~i~g~~l~V~~A~   80 (86)
T d2cpja1          52 ETRTLAEIAKVELDNMPLRGKQLRVRFAC   80 (86)
T ss_dssp             SSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence            57789999995 99999999999998654

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.00096  Score=37.82  Aligned_cols=29  Identities=10%  Similarity=0.192  Sum_probs=25.3

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KRt   31 (69)
                      .++++++.|++ ||+.+|.|++|+|.....
T Consensus        51 ~~~~~A~~a~~~l~~~~l~g~~l~V~~A~~   80 (85)
T d2u2fa_          51 VDINVTDQAIAGLNGMQLGDKKLLVQRASV   80 (85)
T ss_dssp             SSSHHHHHHHHTSSSCCCSSSCCEEEECCC
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence            47899999996 999999999999987653

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.0014  Score=38.40  Aligned_cols=28  Identities=11%  Similarity=-0.066  Sum_probs=24.7

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEeeCc
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~KR   30 (69)
                      ++.++|+.||+ ||+..|.|+.|+|....
T Consensus        54 ~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~   82 (114)
T d2f9da1          54 EDIFDAKNACDHLSGFNVCNRYLVVLYYN   82 (114)
T ss_dssp             SSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             CCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence            57899999994 99999999999998653

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.00034  Score=38.19  Aligned_cols=23  Identities=17%  Similarity=0.190  Sum_probs=20.8

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeE
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIK   25 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~Ik   25 (69)
                      ++++++++||+ ||+++|.|+.||
T Consensus        48 ~~~~~A~~Ai~~lng~~~~Gr~~k   71 (72)
T d1x4ea1          48 DSPSAAQKAVTALKASGVQAQMAK   71 (72)
T ss_dssp             SCHHHHHHHHHHHHHHTCCEESCC
T ss_pred             CCHHHHHHHHHHhCCCEECCEECc
Confidence            57899999995 999999999986

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0013  Score=38.63  Aligned_cols=26  Identities=19%  Similarity=0.194  Sum_probs=23.4

Q ss_pred             cCHHHHHHHHH-ccCCeeeCceeEEee
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQIKVNP   28 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~IkV~~   28 (69)
                      ++++++.+|+. |||..|.||+|+|..
T Consensus        66 ~~~e~A~~A~~~l~Gr~f~gR~v~v~f   92 (104)
T d1o0pa_          66 TSVFDCQKAMQGLTGRKFANRVVVTKY   92 (104)
T ss_dssp             SCHHHHHHHHHHHSSCCSSSSCCEEEE
T ss_pred             CCHHHHHHHHHHHCCCEECCeEEEEEE
Confidence            57899999995 999999999999974

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.0029  Score=36.83  Aligned_cols=30  Identities=23%  Similarity=0.287  Sum_probs=24.6

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCccC
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KRtN   32 (69)
                      +++++|++||++++.+|.|+.|+|..+...
T Consensus        60 ~~~~~A~~Ai~~~~~~l~Gr~l~V~~a~~~   89 (103)
T d2cqda1          60 ADRAAAERACKDPNPIIDGRKANVNLAYLG   89 (103)
T ss_dssp             SSHHHHHHHHTCSSCEETTEECEEEESTTT
T ss_pred             CCHHHHHHHHHHCCCcCCCEEEEEEEcCCC
Confidence            578999999985556899999999877643

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.0035  Score=38.26  Aligned_cols=27  Identities=15%  Similarity=0.206  Sum_probs=24.4

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeC
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPK   29 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~K   29 (69)
                      +++++++.||++|+..|.|++|+|.+.
T Consensus       147 ~~~e~A~~Al~~~~~~~~G~~i~V~~A  173 (183)
T d1u1qa_         147 DDHDSVDKIVIQKYHTVNGHNCEVRKA  173 (183)
T ss_dssp             SCHHHHHHHHTSSCEEETTEEEEEEEC
T ss_pred             CCHHHHHHHHHhCCCeECCEEEEEEec
Confidence            578999999999999999999999754

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.78  E-value=0.0033  Score=35.16  Aligned_cols=26  Identities=27%  Similarity=0.502  Sum_probs=22.7

Q ss_pred             cCHHHHHHHHH-ccCCeeeC--ceeEEee
Q psy13491          3 AKRDEVQTAMA-MDESLFRG--RQIKVNP   28 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frG--R~IkV~~   28 (69)
                      .++++++.||+ ||++.|.|  ++|+|..
T Consensus        56 ~~~~~A~~Ai~~l~g~~~~g~~~~l~V~~   84 (85)
T d1b7fa2          56 NKREEAQEAISALNNVIPEGGSQPLSVRL   84 (85)
T ss_dssp             SSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred             CCHHHHHHHHHHHCCCEeCCCCeEEEEEE
Confidence            57899999995 99999987  8899964

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.48  E-value=0.0072  Score=34.62  Aligned_cols=30  Identities=27%  Similarity=0.371  Sum_probs=25.0

Q ss_pred             cCHHHHHHHHH-ccCCeeeC--ceeEEeeCccC
Q psy13491          3 AKRDEVQTAMA-MDESLFRG--RQIKVNPKRTN   32 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frG--R~IkV~~KRtN   32 (69)
                      +++++++.|++ ||+.+|.|  ++|+|...+.+
T Consensus        61 ~~~~~A~~A~~~l~~~~i~g~~~~l~v~~ak~~   93 (97)
T d1whya_          61 ESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSG   93 (97)
T ss_dssp             SSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCC
T ss_pred             CCHHHHHHHHHHhCCCEeCCCceEEEEEeCCCC
Confidence            57899999995 99999987  57999887753

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.47  E-value=0.0056  Score=34.13  Aligned_cols=28  Identities=7%  Similarity=0.065  Sum_probs=23.7

Q ss_pred             cCHHHHHHHHH-ccCCee-eCceeEEeeCc
Q psy13491          3 AKRDEVQTAMA-MDESLF-RGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~f-rGR~IkV~~KR   30 (69)
                      ++.++++.|+. ||+..| .|+.|+|...+
T Consensus        53 ~~~~~A~~A~~~l~g~~~~~~~~i~v~~ak   82 (83)
T d2b0ga1          53 TTELQSNAAKEALQGFKITPTHAMKITFAK   82 (83)
T ss_dssp             SSHHHHHHHHHHHTTCBSSTTCBCEEEECC
T ss_pred             CCHHHHHHHHHHhCCcEeCCCcEEEEEEec
Confidence            57899999995 999988 56899998764

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.0052  Score=34.47  Aligned_cols=26  Identities=27%  Similarity=0.289  Sum_probs=21.6

Q ss_pred             cCHHHHHHHHH-ccCCeeeCce--eEEee
Q psy13491          3 AKRDEVQTAMA-MDESLFRGRQ--IKVNP   28 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~frGR~--IkV~~   28 (69)
                      ++++++++|++ ||+++|.|+.  |+|..
T Consensus        56 ~~~~~a~~Ai~~lng~~~~G~~~~i~V~~   84 (85)
T d1fxla2          56 DKRIEAEEAIKGLNGQKPSGATEPITVKF   84 (85)
T ss_dssp             SSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred             cCHHHHHHHHHHhCCCEeCCCCEEEEEEe
Confidence            57899999995 9999999855  77753

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.0045  Score=34.98  Aligned_cols=27  Identities=11%  Similarity=0.304  Sum_probs=23.0

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeCc
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~KR   30 (69)
                      +++++|++||. |+.+|.|++|+|....
T Consensus        50 ~~~~~a~~a~~-~~~~i~g~~l~v~~a~   76 (88)
T d1wf0a_          50 ADDQIAQSLCG-EDLIIKGISVHISNAE   76 (88)
T ss_dssp             SCHHHHHHTTT-CEEEETTEEEEEECCC
T ss_pred             CCHHHHHHHHh-CCCEECCEEeEEEeCC
Confidence            57889999986 8899999999998653

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.73  E-value=0.014  Score=32.72  Aligned_cols=29  Identities=28%  Similarity=0.370  Sum_probs=23.5

Q ss_pred             cCHHHHHHHHH-cc------CCeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MD------ESLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln------~s~frGR~IkV~~KRt   31 (69)
                      .++++++.||+ ||      +.+|.|+.|+|....+
T Consensus        58 ~~~~~a~~ai~~l~~~~~~~g~~~~gr~l~v~~a~~   93 (98)
T d1x4ha1          58 MTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVT   93 (98)
T ss_dssp             SSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCC
T ss_pred             cCHHHHHHHHHHcccccccCCcEECCEEEEEEECCC
Confidence            47899999995 65      6789999999987654

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.60  E-value=0.013  Score=33.88  Aligned_cols=27  Identities=22%  Similarity=0.420  Sum_probs=23.3

Q ss_pred             cCHHHHHHHHH---ccCCeeeCceeEEeeC
Q psy13491          3 AKRDEVQTAMA---MDESLFRGRQIKVNPK   29 (69)
Q Consensus         3 a~~~sv~~Al~---Ln~s~frGR~IkV~~K   29 (69)
                      +++++|++||+   +|+..|.|+.|+|...
T Consensus        63 ~~~~~A~~Ai~~~~~~~~~~~gr~l~V~~s   92 (99)
T d1x4fa1          63 ETREDAMAMVDHCLKKALWFQGRCVKVDLS   92 (99)
T ss_dssp             SSHHHHHHHHHHHHHSCCCSSSSCCEEEEE
T ss_pred             cchHHHHHHHHHHhcCCceECCEEEEEEEc
Confidence            57889999984   8899999999999864

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.56  E-value=0.017  Score=32.81  Aligned_cols=28  Identities=21%  Similarity=0.412  Sum_probs=23.1

Q ss_pred             cCHHHHHHHHH---ccCCeeeCceeEEeeCc
Q psy13491          3 AKRDEVQTAMA---MDESLFRGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~---Ln~s~frGR~IkV~~KR   30 (69)
                      ++.+++++|++   +++.+|.|++|+|....
T Consensus        53 ~~~~~A~~A~~~l~~~~~~~~gr~l~V~~s~   83 (89)
T d1x4da1          53 ATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ   83 (89)
T ss_dssp             SSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred             cchhhHHHHHHHHhhCCCccCCceEEEEECC
Confidence            57888999985   47889999999998654

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.50  E-value=0.0075  Score=33.54  Aligned_cols=25  Identities=8%  Similarity=0.070  Sum_probs=22.6

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEe
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVN   27 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~   27 (69)
                      ++++++++||++++.++.|++|+|.
T Consensus        49 ~~~~~a~~al~~~~~~i~g~~i~vk   73 (75)
T d1x0fa1          49 KEEEPVKKIMEKKYHNVGLSKCEIK   73 (75)
T ss_dssp             SSSHHHHHHTTCSSCCBTTBCCEEE
T ss_pred             CCHHHHHHHHhhCCCEECCEEeEEE
Confidence            5789999999999999999999985

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.07  E-value=0.017  Score=33.45  Aligned_cols=28  Identities=14%  Similarity=0.139  Sum_probs=23.1

Q ss_pred             cCHHHHHHHHH-ccCCee--eCceeEEeeCc
Q psy13491          3 AKRDEVQTAMA-MDESLF--RGRQIKVNPKR   30 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~s~f--rGR~IkV~~KR   30 (69)
                      +++++|++||. ||+.+|  +++.|+|...+
T Consensus        53 ~~~e~A~~Ai~~ln~~~l~~~~~~l~v~~s~   83 (108)
T d2adba1          53 ADPVSAQHAKLSLDGQNIYNACCTLRIDFSK   83 (108)
T ss_dssp             SCHHHHHHHHHHHHSCCSSTTCCCCEEEECS
T ss_pred             CCHHHHHHHHHHHCCCEeccCCcEEEEEecC
Confidence            57899999995 999998  57888886554

>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Synaptojanin 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.94  E-value=0.017  Score=35.37  Aligned_cols=26  Identities=15%  Similarity=0.354  Sum_probs=23.2

Q ss_pred             CHHHHHHHHHccCCeeeCceeEEeeC
Q psy13491          4 KRDEVQTAMAMDESLFRGRQIKVNPK   29 (69)
Q Consensus         4 ~~~sv~~Al~Ln~s~frGR~IkV~~K   29 (69)
                      |-++|.+||.||++++.|++|+|+.+
T Consensus        67 dG~SAL~al~l~g~~v~G~~l~It~~   92 (95)
T d1ufwa_          67 DSHSALSVLDVDGMKVKGRAVKISGP   92 (95)
T ss_dssp             CSHHHHHHHHGGGSEETTEEEEEECC
T ss_pred             CcHHHHHHhccCCeEEcceEEEEecC
Confidence            45789999999999999999999854

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.41  E-value=0.075  Score=29.41  Aligned_cols=27  Identities=15%  Similarity=0.160  Sum_probs=22.6

Q ss_pred             cCHHHHHHHHH---ccCCeeeCceeEEeeC
Q psy13491          3 AKRDEVQTAMA---MDESLFRGRQIKVNPK   29 (69)
Q Consensus         3 a~~~sv~~Al~---Ln~s~frGR~IkV~~K   29 (69)
                      ++++++++|++   +++.+|.|++|+|...
T Consensus        52 ~~~e~A~~a~~~~~~~~~~~~g~~l~v~~s   81 (88)
T d2cq1a1          52 ATEEAAITMVNYYSAVTPHLRNQPIYIQYS   81 (88)
T ss_dssp             SSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred             CCHHHHHHHHHHHccCCCccCCCEEEEEEC
Confidence            57889999985   5778999999999854

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.99  E-value=0.072  Score=30.13  Aligned_cols=26  Identities=12%  Similarity=0.203  Sum_probs=21.1

Q ss_pred             cCHHHHHHHHHccCCeeeCceeEEeeC
Q psy13491          3 AKRDEVQTAMAMDESLFRGRQIKVNPK   29 (69)
Q Consensus         3 a~~~sv~~Al~Ln~s~frGR~IkV~~K   29 (69)
                      ++++++++||+ +...|.|++|+|...
T Consensus        58 ~~~~~a~~al~-~~~~l~Gr~i~v~~a   83 (90)
T d2cqga1          58 TEYETQVKVMS-QRHMIDGRWCDCKLP   83 (90)
T ss_dssp             SSHHHHHHHHH-SCEEETTEEEEEECC
T ss_pred             CCHHHHHHHHh-cCCccCCEEeEEEeC
Confidence            57899999997 334899999999654

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.94  E-value=0.099  Score=29.31  Aligned_cols=29  Identities=17%  Similarity=0.121  Sum_probs=23.1

Q ss_pred             cCHHHHHHHHH-ccC--CeeeCceeEEeeCcc
Q psy13491          3 AKRDEVQTAMA-MDE--SLFRGRQIKVNPKRT   31 (69)
Q Consensus         3 a~~~sv~~Al~-Ln~--s~frGR~IkV~~KRt   31 (69)
                      ++.++++.||. |++  ..+.|+.|+|..+..
T Consensus        53 ~~~~~A~~Ai~~l~~~~~~~~g~~i~V~~A~p   84 (96)
T d2disa1          53 ESHRAAAMARRKLMPGRIQLWGHQIAVDWAEP   84 (96)
T ss_dssp             SSHHHHHHHHTTTTTCCSCBTTBCCEEEESCS
T ss_pred             cCHHHHHHHHHHHcCCCeEECCEEEEEEEcCC
Confidence            57899999995 764  466799999998754

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.39  E-value=0.26  Score=27.97  Aligned_cols=27  Identities=15%  Similarity=0.130  Sum_probs=21.9

Q ss_pred             cCHHHHHHHHH-c--cCCeeeCceeEEeeC
Q psy13491          3 AKRDEVQTAMA-M--DESLFRGRQIKVNPK   29 (69)
Q Consensus         3 a~~~sv~~Al~-L--n~s~frGR~IkV~~K   29 (69)
                      ++++++++||+ |  +...+.|++|+|...
T Consensus        59 ~~~e~A~~ai~~~~~~~~~~~g~~l~v~~s   88 (104)
T d1wexa_          59 ENIDSAKECVTFAADVPVYIAGQQAFFNYS   88 (104)
T ss_dssp             SSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred             CCHHHHHHHHHHHcCCCcEEeeEEEEEEEc
Confidence            57899999995 5  456788999999764

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.24  E-value=0.46  Score=27.14  Aligned_cols=24  Identities=13%  Similarity=0.159  Sum_probs=17.3

Q ss_pred             cCHHHHHHHH-HccCCee-eCceeEE
Q psy13491          3 AKRDEVQTAM-AMDESLF-RGRQIKV   26 (69)
Q Consensus         3 a~~~sv~~Al-~Ln~s~f-rGR~IkV   26 (69)
                      ++.+++++|+ +|||.++ .+..++|
T Consensus        64 ~~~e~A~~A~~~lng~~i~~~~~~~i   89 (101)
T d2cq2a1          64 RTTEESKRAYVTLNGKEVVDDLGQKI   89 (101)
T ss_dssp             SSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred             CCHHHHHHHHHHhCCCCCCCCCCcEE
Confidence            5789999999 5999876 3333433