Psyllid ID: psy13497

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--
MSSNEIAKVEESHPEHPRNLIPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQKERLTSKDLFVQDMEGKDLQLPEDKTLKKSQCTPLFMCSYTLRNAGAVIHTHSKAAVLVTMLYPGNVSIELVSSYLGNIFQLKFFVQFTYNWYLVAYCWSNVFRIAYQEMIKGTWNSTLGRYNRYDEELVVPIIENTPQEKDLRDSLERALVEFPSTSAVLVRRHGVYVWGGDWKSTKTQTECYDYLFELAVSMKQLGLNPLSPP
ccccccccccccccccHHHHHHHHHHHHHHccccccccccEEEEEccEEEEEcccccccccccccEEEEEccccEEccccccccccccccHHHHHHHHcccccEEEEEccHHHHHHHHHcccccHHHHHHHHccccccccccccccccHHHHHHHcccEEEEccHHHHHHccccccccccccccEEEEEEEcccccHHHHHHHHHHHHHHccccEEEEEcccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHccccccccc
ccccccEEEcccccccHHHHHHHHHHHHHHccccccccccEEEEcccEEEEEccccccccccHccEEEEEccccccccccccccccccccHHHHHHHHcccccEEEEEccHHHEEHHEEcccccEEEEEccHHHHEEEEccHHHHHHHHHHcccccccEEEEccHHHHEEccccccccccccccEEEEEEEcccccHHHHHHHHHHHHHHcccccEEEEEcccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHccccccccc
MSSNEIakveeshpehprnliPELCKQFYHLGwvtgtgggmtiklgdeiyiapsgvqkerltskdlfvqdmegkdlqlpedktlkksqctplfmcsytlrnagavihTHSKAAVLVTMLYPGNVSIELVSSYLGNIFQLKFFVQFTYNWYLVAYCWSNVFRIAYQEMIKGTWnstlgrynrydeelvvpiientpqekDLRDSLERALvefpstsavlvrrhgvyvwggdwkstktqTECYDYLFELAVSMKqlglnplspp
mssneiakveeshpehprnLIPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQKERLTSKDLFVQDMegkdlqlpedktlkksqCTPLFMCSYTLRNAGAVIHTHSKAAVLVTMLYPGNVSIELVSSYLGNIFQLKFFVQFTYNWYLVAYCWSNVFRIAYQEMIKGTWNSTLGRYNRYDEElvvpiientpqekDLRDSLERALVefpstsavlvrrhgvyvwggdwkstktQTECYDYLFELAVSMKqlglnplspp
MSSNEIAKVEESHPEHPRNLIPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQKERLTSKDLFVQDMEGKDLQLPEDKTLKKSQCTPLFMCSYTLRNAGAVIHTHSKAAVLVTMLYPGNVSIELVSSYLGNIFQLKFFVQFTYNWYLVAYCWSNVFRIAYQEMIKGTWNSTLGRYNRYDEELVVPIIENTPQEKDLRDSLERALVEFPSTSAVLVRRHGVYVWGGDWKSTKTQTECYDYLFELAVSMKQLGLNPLSPP
*******************LIPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQK**L***DLFV******************SQCTPLFMCSYTLRNAGAVIHTHSKAAVLVTMLYPGNVSIELVSSYLGNIFQLKFFVQFTYNWYLVAYCWSNVFRIAYQEMIKGTWNSTLGRYNRYDEELVVPIIENT*********LERALVEFPSTSAVLVRRHGVYVWGGDWKSTKTQTECYDYLFELAVSMKQL********
****************PRNLIPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQKERLTSKDLFVQDMEGKDLQ******LKKSQCTPLFMCSYTLRNAGAVIHTHSKAAVLVTMLYPGNVSIELVSSYLGNIFQLKFFVQFTYNWYLVAYCWSNVFRIAYQEMIKGTWNSTLGRYNRYDEELVVPIIENTPQEKDLRDSLERALVEFPSTSAVLVRRHGVYVWGGDWKSTKTQTECYDYLFELAVSMKQLGLN*****
***************HPRNLIPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQKERLTSKDLFVQDMEGKDLQLPEDKTLKKSQCTPLFMCSYTLRNAGAVIHTHSKAAVLVTMLYPGNVSIELVSSYLGNIFQLKFFVQFTYNWYLVAYCWSNVFRIAYQEMIKGTWNSTLGRYNRYDEELVVPIIENTPQEKDLRDSLERALVEFPSTSAVLVRRHGVYVWGGDWKSTKTQTECYDYLFELAVSMKQLGLNPLSPP
*****IAKVEESHPEHPRNLIPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQKERLTSKDLFVQDMEGKDLQLPEDKTLKKSQCTPLFMCSYTLRNAGAVIHTHSKAAVLVTMLYPGNVSIELVSSYLGNIFQLKFFVQFTYNWYLVAYCWSNVFRIAYQEMIKGTWNSTLGRYNRYDEELVVPIIENTPQEKDLRDSLERALVEFPSTSAVLVRRHGVYVWGGDWKSTKTQTECYDYLFELAVSMKQLGLNP****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSSNEIAKVEESHPEHPRNLIPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQKERLTSKDLFVQDMEGKDLQLPEDKTLKKSQCTPLFMCSYTLRNAGAVIHTHSKAAVLVTMLYPGNVSIELVSSYLGNIFQLKFFVQFTYNWYLVAYCWSNVFRIAYQEMIKGTWNSTLGRYNRYDEELVVPIIENTPQEKDLRDSLERALVEFPSTSAVLVRRHGVYVWGGDWKSTKTQTECYDYLFELAVSMKQLGLNPLSPP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query262 2.2.26 [Sep-21-2011]
B4M1W5230 Probable methylthioribulo N/A N/A 0.797 0.908 0.6 7e-80
B3NVZ7227 Probable methylthioribulo N/A N/A 0.797 0.920 0.587 7e-79
B4R4E9227 Probable methylthioribulo N/A N/A 0.797 0.920 0.587 8e-79
B4IG61227 Probable methylthioribulo N/A N/A 0.797 0.920 0.587 8e-79
Q9VY93227 Probable methylthioribulo yes N/A 0.797 0.920 0.587 8e-79
B4Q2F5227 Probable methylthioribulo N/A N/A 0.797 0.920 0.583 2e-78
B4L8M2227 Probable methylthioribulo N/A N/A 0.797 0.920 0.591 2e-78
B4JLL3230 Probable methylthioribulo N/A N/A 0.797 0.908 0.583 5e-78
B3MW09227 Probable methylthioribulo N/A N/A 0.797 0.920 0.583 5e-78
C1C4M8239 Methylthioribulose-1-phos N/A N/A 0.809 0.887 0.572 6e-78
>sp|B4M1W5|MTNB_DROVI Probable methylthioribulose-1-phosphate dehydratase OS=Drosophila virilis GN=GJ19387 PE=3 SV=1 Back     alignment and function desciption
 Score =  296 bits (759), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 147/245 (60%), Positives = 172/245 (70%), Gaps = 36/245 (14%)

Query: 15  EHPRNLIPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQKERLTSKDLFVQDMEGK 74
           EHPRNLIP LC+QFYHLGWVTGTGGGM+IK  +EIYIAPSGVQKER+  +DLFVQD++GK
Sbjct: 12  EHPRNLIPSLCRQFYHLGWVTGTGGGMSIKYNNEIYIAPSGVQKERMQPEDLFVQDIDGK 71

Query: 75  DLQL-PEDKTLKKSQCTPLFMCSYTLRNAGAVIHTHSKAAVLVTMLYPGNVSIELVSSYL 133
           DLQL PE K L KSQCTPLFM +Y  RNAGAVIHTHS+ AV+ T+L+PG           
Sbjct: 72  DLQLPPEIKGLSKSQCTPLFMLAYRHRNAGAVIHTHSQHAVMATLLWPG----------- 120

Query: 134 GNIFQLKFFVQFTYNWYLVAYCWSNVFRIAYQEMIKGTWNSTLGRYNRYDEELVVPIIEN 193
                                     FR  + EMIKG ++    RY RYDE+LVVPIIEN
Sbjct: 121 ------------------------KTFRCTHLEMIKGVYDEADKRYLRYDEQLVVPIIEN 156

Query: 194 TPQEKDLRDSLERALVEFPSTSAVLVRRHGVYVWGGDWKSTKTQTECYDYLFELAVSMKQ 253
           TP E+DL DS+  A++E+P  SAVLVRRHGVYVWG  W+ TKT +ECYDYLF +AV MKQ
Sbjct: 157 TPFERDLADSMYAAMMEYPGCSAVLVRRHGVYVWGQTWEKTKTMSECYDYLFSIAVQMKQ 216

Query: 254 LGLNP 258
            GL+P
Sbjct: 217 AGLDP 221
Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P).
Drosophila virilis (taxid: 7244)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 0EC: 9
>sp|B3NVZ7|MTNB_DROER Probable methylthioribulose-1-phosphate dehydratase OS=Drosophila erecta GN=GG17808 PE=3 SV=1 Back     alignment and function description
>sp|B4R4E9|MTNB_DROSI Probable methylthioribulose-1-phosphate dehydratase OS=Drosophila simulans GN=GD17142 PE=3 SV=1 Back     alignment and function description
>sp|B4IG61|MTNB_DROSE Probable methylthioribulose-1-phosphate dehydratase OS=Drosophila sechellia GN=GM17635 PE=3 SV=1 Back     alignment and function description
>sp|Q9VY93|MTNB_DROME Probable methylthioribulose-1-phosphate dehydratase OS=Drosophila melanogaster GN=CG11134 PE=2 SV=1 Back     alignment and function description
>sp|B4Q2F5|MTNB_DROYA Probable methylthioribulose-1-phosphate dehydratase OS=Drosophila yakuba GN=GE17104 PE=3 SV=1 Back     alignment and function description
>sp|B4L8M2|MTNB_DROMO Probable methylthioribulose-1-phosphate dehydratase OS=Drosophila mojavensis GN=GI14333 PE=3 SV=1 Back     alignment and function description
>sp|B4JLL3|MTNB_DROGR Probable methylthioribulose-1-phosphate dehydratase OS=Drosophila grimshawi GN=GH11851 PE=3 SV=1 Back     alignment and function description
>sp|B3MW09|MTNB_DROAN Probable methylthioribulose-1-phosphate dehydratase OS=Drosophila ananassae GN=GF22600 PE=3 SV=1 Back     alignment and function description
>sp|C1C4M8|MTNB_LITCT Methylthioribulose-1-phosphate dehydratase OS=Lithobates catesbeiana GN=apip PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query262
91092392220 PREDICTED: similar to MGC107831 protein 0.801 0.954 0.609 3e-80
332373766238 unknown [Dendroctonus ponderosae] 0.851 0.936 0.581 3e-80
357617116225 hypothetical protein KGM_02407 [Danaus p 0.824 0.96 0.596 7e-80
307172409240 APAF1-interacting protein [Camponotus fl 0.812 0.887 0.578 2e-79
383862417287 PREDICTED: probable methylthioribulose-1 0.812 0.742 0.586 3e-78
211904138246 APAF1 interacting protein [Nasonia vitri 0.812 0.865 0.574 3e-78
195393654230 GJ19387 [Drosophila virilis] gi|29495663 0.797 0.908 0.6 4e-78
327280957243 PREDICTED: probable methylthioribulose-1 0.809 0.872 0.580 9e-78
194895352227 GG17808 [Drosophila erecta] gi|294956615 0.797 0.920 0.587 4e-77
18859685227 CG11134, isoform A [Drosophila melanogas 0.797 0.920 0.587 5e-77
>gi|91092392|ref|XP_968781.1| PREDICTED: similar to MGC107831 protein [Tribolium castaneum] gi|270011250|gb|EFA07698.1| hypothetical protein TcasGA2_TC002174 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  304 bits (778), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 150/246 (60%), Positives = 175/246 (71%), Gaps = 36/246 (14%)

Query: 15  EHPRNLIPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQKERLTSKDLFVQDMEGK 74
           EHPRNLIPELC+QFYHLGWVTGTGGG++IKLGDEIYIAPSGVQKERL  +DLFVQD++G+
Sbjct: 6   EHPRNLIPELCRQFYHLGWVTGTGGGISIKLGDEIYIAPSGVQKERLQPEDLFVQDIKGE 65

Query: 75  DLQL-PEDKTLKKSQCTPLFMCSYTLRNAGAVIHTHSKAAVLVTMLYPGNVSIELVSSYL 133
           DLQL P +K LKKSQCTPLFMC+YT RNAGAVIHTHSKAAVL T+L+PG           
Sbjct: 66  DLQLPPPEKKLKKSQCTPLFMCAYTARNAGAVIHTHSKAAVLATLLFPG----------- 114

Query: 134 GNIFQLKFFVQFTYNWYLVAYCWSNVFRIAYQEMIKGTWNSTLGRYNRYDEELVVPIIEN 193
                                     F+ ++ EMIKG  N   G+  RYD+ LVVPIIEN
Sbjct: 115 ------------------------KEFKCSHLEMIKGIKNQKTGKNLRYDDTLVVPIIEN 150

Query: 194 TPQEKDLRDSLERALVEFPSTSAVLVRRHGVYVWGGDWKSTKTQTECYDYLFELAVSMKQ 253
           TP E+DL+D L + + E+P T AVLVRRHGVYVWG  W+  KT TECYDYLF++ V MK 
Sbjct: 151 TPFEEDLKDRLAQTIAEYPETCAVLVRRHGVYVWGDTWQQAKTMTECYDYLFDIVVQMKS 210

Query: 254 LGLNPL 259
            GL+ L
Sbjct: 211 HGLDSL 216

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|332373766|gb|AEE62024.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|357617116|gb|EHJ70592.1| hypothetical protein KGM_02407 [Danaus plexippus] Back     alignment and taxonomy information
>gi|307172409|gb|EFN63871.1| APAF1-interacting protein [Camponotus floridanus] Back     alignment and taxonomy information
>gi|383862417|ref|XP_003706680.1| PREDICTED: probable methylthioribulose-1-phosphate dehydratase-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|211904138|ref|NP_001123086.2| APAF1 interacting protein [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|195393654|ref|XP_002055468.1| GJ19387 [Drosophila virilis] gi|294956630|sp|B4M1W5.1|MTNB_DROVI RecName: Full=Probable methylthioribulose-1-phosphate dehydratase; Short=MTRu-1-P dehydratase gi|194149978|gb|EDW65669.1| GJ19387 [Drosophila virilis] Back     alignment and taxonomy information
>gi|327280957|ref|XP_003225217.1| PREDICTED: probable methylthioribulose-1-phosphate dehydratase-like [Anolis carolinensis] Back     alignment and taxonomy information
>gi|194895352|ref|XP_001978235.1| GG17808 [Drosophila erecta] gi|294956615|sp|B3NVZ7.1|MTNB_DROER RecName: Full=Probable methylthioribulose-1-phosphate dehydratase; Short=MTRu-1-P dehydratase gi|190649884|gb|EDV47162.1| GG17808 [Drosophila erecta] Back     alignment and taxonomy information
>gi|18859685|ref|NP_572916.1| CG11134, isoform A [Drosophila melanogaster] gi|442616268|ref|NP_001259530.1| CG11134, isoform B [Drosophila melanogaster] gi|195352442|ref|XP_002042721.1| GM17635 [Drosophila sechellia] gi|195566630|ref|XP_002106882.1| GD17142 [Drosophila simulans] gi|74871643|sp|Q9VY93.1|MTNB_DROME RecName: Full=Probable methylthioribulose-1-phosphate dehydratase; Short=MTRu-1-P dehydratase gi|294956628|sp|B4IG61.1|MTNB_DROSE RecName: Full=Probable methylthioribulose-1-phosphate dehydratase; Short=MTRu-1-P dehydratase gi|294956629|sp|B4R4E9.1|MTNB_DROSI RecName: Full=Probable methylthioribulose-1-phosphate dehydratase; Short=MTRu-1-P dehydratase gi|7292919|gb|AAF48310.1| CG11134, isoform A [Drosophila melanogaster] gi|17946270|gb|AAL49175.1| RE61993p [Drosophila melanogaster] gi|194126752|gb|EDW48795.1| GM17635 [Drosophila sechellia] gi|194204275|gb|EDX17851.1| GD17142 [Drosophila simulans] gi|220948664|gb|ACL86875.1| CG11134-PA [synthetic construct] gi|220958120|gb|ACL91603.1| CG11134-PA [synthetic construct] gi|440216749|gb|AGB95372.1| CG11134, isoform B [Drosophila melanogaster] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query262
FB|FBgn0030518227 CG11134 [Drosophila melanogast 0.412 0.475 0.761 1.2e-75
UNIPROTKB|J3KN82259 APIP "Methylthioribulose-1-pho 0.412 0.416 0.733 2e-75
UNIPROTKB|Q96GX9242 APIP "Methylthioribulose-1-pho 0.412 0.446 0.733 2e-75
UNIPROTKB|F1PT95242 APIP "Uncharacterized protein" 0.412 0.446 0.724 2.5e-75
UNIPROTKB|C1C4M8239 apip "Methylthioribulose-1-pho 0.408 0.447 0.712 3.2e-75
UNIPROTKB|Q5FW37239 apip "Methylthioribulose-1-pho 0.408 0.447 0.712 6.7e-75
UNIPROTKB|F1SGT2242 LOC100525733 "Uncharacterized 0.412 0.446 0.715 8.5e-75
UNIPROTKB|Q0VCJ2242 APIP "Methylthioribulose-1-pho 0.412 0.446 0.715 1.4e-74
RGD|1564562241 Apip "APAF1 interacting protei 0.412 0.448 0.715 1.4e-74
UNIPROTKB|Q6NU29239 apip "Methylthioribulose-1-pho 0.408 0.447 0.712 2.9e-74
FB|FBgn0030518 CG11134 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 440 (159.9 bits), Expect = 1.2e-75, Sum P(2) = 1.2e-75
 Identities = 83/109 (76%), Positives = 94/109 (86%)

Query:    15 EHPRNLIPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQKERLTSKDLFVQDMEGK 74
             EHPR+LIP LC+QFYHLGWVTGTGGGM+IK  DEIYIAPSGVQKER+  +DLFVQD+ GK
Sbjct:    12 EHPRHLIPSLCRQFYHLGWVTGTGGGMSIKYNDEIYIAPSGVQKERMQPEDLFVQDITGK 71

Query:    75 DLQLP-EDKTLKKSQCTPLFMCSYTLRNAGAVIHTHSKAAVLVTMLYPG 122
             DLQLP E K LKKSQCTPLFM +Y  R AGAVIHTHS+ AV+ T+L+PG
Sbjct:    72 DLQLPPEIKGLKKSQCTPLFMLAYQHRQAGAVIHTHSQHAVMATLLWPG 120
GO:0005737 "cytoplasm" evidence=IEA
GO:0071267 "L-methionine salvage" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
UNIPROTKB|J3KN82 APIP "Methylthioribulose-1-phosphate dehydratase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q96GX9 APIP "Methylthioribulose-1-phosphate dehydratase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PT95 APIP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|C1C4M8 apip "Methylthioribulose-1-phosphate dehydratase" [Rana catesbeiana (taxid:8400)] Back     alignment and assigned GO terms
UNIPROTKB|Q5FW37 apip "Methylthioribulose-1-phosphate dehydratase" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|F1SGT2 LOC100525733 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q0VCJ2 APIP "Methylthioribulose-1-phosphate dehydratase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1564562 Apip "APAF1 interacting protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q6NU29 apip "Methylthioribulose-1-phosphate dehydratase" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
C1C4M8MTNB_LITCT4, ., 2, ., 1, ., 1, 0, 90.57250.80910.8870N/AN/A
Q7PS09MTNB_ANOGA4, ., 2, ., 1, ., 1, 0, 90.54750.86640.9826yesN/A
C4R7D9MTNB_PICPG4, ., 2, ., 1, ., 1, 0, 90.47930.77480.8458yesN/A
B5X277MTNB_SALSA4, ., 2, ., 1, ., 1, 0, 90.52690.85490.8924N/AN/A
Q5ZLP2MTNB_CHICK4, ., 2, ., 1, ., 1, 0, 90.56450.80910.8760yesN/A
C1BYA3MTNB_ESOLU4, ., 2, ., 1, ., 1, 0, 90.53900.83960.8560N/AN/A
A3LVM9MTNB_PICST4, ., 2, ., 1, ., 1, 0, 90.45550.83960.8301yesN/A
Q54NY7MTNB_DICDI4, ., 2, ., 1, ., 1, 0, 90.49400.80910.9177yesN/A
Q66I75MTNB_DANRE4, ., 2, ., 1, ., 1, 0, 90.52360.83200.9045yesN/A
Q0VCJ2MTNB_BOVIN4, ., 2, ., 1, ., 1, 0, 90.57020.81290.8801yesN/A
P0CM14MTNB_CRYNJ4, ., 2, ., 1, ., 1, 0, 90.43960.81670.8770yesN/A
B2A8X1MTNB_PODAN4, ., 2, ., 1, ., 1, 0, 90.44920.82820.8346yesN/A
Q9WVQ5MTNB_MOUSE4, ., 2, ., 1, ., 1, 0, 90.56620.81290.8838yesN/A
A4I3R0MTNB_LEIIN4, ., 2, ., 1, ., 1, 0, 90.45740.80150.9333yesN/A
Q4Q882MTNB_LEIMA4, ., 2, ., 1, ., 1, 0, 90.44170.80910.8870yesN/A
A4HGN7MTNB_LEIBR4, ., 2, ., 1, ., 1, 0, 90.46150.80150.9333yesN/A
Q9VY93MTNB_DROME4, ., 2, ., 1, ., 1, 0, 90.58770.79770.9207yesN/A
Q29HV4MTNB_DROPS4, ., 2, ., 1, ., 1, 0, 90.57550.79770.9086yesN/A
Q96GX9MTNB_HUMAN4, ., 2, ., 1, ., 1, 0, 90.57830.81290.8801yesN/A
Q6CBB0MTNB_YARLI4, ., 2, ., 1, ., 1, 0, 90.4520.81290.8949yesN/A
Q5FW37MTNB_XENTR4, ., 2, ., 1, ., 1, 0, 90.56850.80910.8870yesN/A
C1BJB1MTNB_OSMMO4, ., 2, ., 1, ., 1, 0, 90.53410.81290.8838N/AN/A
Q6NU29MTNB_XENLA4, ., 2, ., 1, ., 1, 0, 90.56040.80910.8870N/AN/A
Q16NX0MTNB_AEDAE4, ., 2, ., 1, ., 1, 0, 90.57020.81290.8765N/AN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer4.2.1.1090.914
3rd Layer4.2.10.921

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query262
TIGR03328193 TIGR03328, salvage_mtnB, methylthioribulose-1-phos 2e-74
smart01007185 smart01007, Aldolase_II, Class II Aldolase and Add 2e-36
pfam00596181 pfam00596, Aldolase_II, Class II Aldolase and Addu 7e-36
COG0235219 COG0235, AraD, Ribulose-5-phosphate 4-epimerase an 8e-28
PRK06754208 PRK06754, mtnB, methylthioribulose-1-phosphate deh 8e-22
cd00398209 cd00398, Aldolase_II, Class II Aldolase and Adduci 1e-20
PRK09220204 PRK09220, PRK09220, methylthioribulose-1-phosphate 6e-18
PRK08130213 PRK08130, PRK08130, putative aldolase; Validated 3e-05
PRK13145234 PRK13145, araD, L-ribulose-5-phosphate 4-epimerase 7e-05
TIGR01086214 TIGR01086, fucA, L-fuculose phosphate aldolase 7e-05
PRK08087215 PRK08087, PRK08087, L-fuculose phosphate aldolase; 8e-05
cd00398209 cd00398, Aldolase_II, Class II Aldolase and Adduci 2e-04
PRK12348228 PRK12348, sgaE, L-ribulose-5-phosphate 4-epimerase 5e-04
PRK08193231 PRK08193, araD, L-ribulose-5-phosphate 4-epimerase 7e-04
PRK06557221 PRK06557, PRK06557, L-ribulose-5-phosphate 4-epime 7e-04
PRK06755209 PRK06755, PRK06755, hypothetical protein; Validate 7e-04
PRK06833214 PRK06833, PRK06833, L-fuculose phosphate aldolase; 0.002
TIGR00760231 TIGR00760, araD, L-ribulose-5-phosphate 4-epimeras 0.002
>gnl|CDD|234168 TIGR03328, salvage_mtnB, methylthioribulose-1-phosphate dehydratase Back     alignment and domain information 
 Score =  224 bits (574), Expect = 2e-74
 Identities = 80/236 (33%), Positives = 109/236 (46%), Gaps = 45/236 (19%)

Query: 21  IPELCKQFYHLGWVTGTGGGMTIKL-GDEIYIAPSGVQKERLTSKDLFVQDMEGKDLQLP 79
           + E  +  Y  GWV GTGG ++ +L  DEI I PSGV K RLT +D  V D++GK +   
Sbjct: 1   LIEAGRDLYKRGWVPGTGGNLSARLDEDEILITPSGVDKGRLTPEDFLVVDLQGKPVS-- 58

Query: 80  EDKTLKKSQCTPLFMCSYTLR-NAGAVIHTHSKAAVLVTMLYPGNVSIELVSSYLGNIFQ 138
               LK S  T L    Y L   AGAV+HTHS  A +++ LYP N               
Sbjct: 59  --GGLKPSAETLLHTQLYRLTPGAGAVLHTHSVEATVLSRLYPSN--------------- 101

Query: 139 LKFFVQFTYNWYLVAYCWSNVFRIAYQEMIKGTWNSTLGRYNRYDEELVVPIIENTPQEK 198
                                F +   EM+K      L     ++++L +PI ENT    
Sbjct: 102 -------------------GAFELEGYEMLKA-----LPGITTHEDKLTIPIFENTQDIA 137

Query: 199 DLRDSLERALVEFPSTSAVLVRRHGVYVWGGDWKSTKTQTECYDYLFELAVSMKQL 254
            L DS+   L  +P    VL+R HG+Y WG DW+  K   E  ++LFE  + M +L
Sbjct: 138 RLADSVAPYLEAYPDVPGVLIRGHGLYAWGRDWEEAKRHLEALEFLFECELEMLKL 193

Members of this family are the methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway. This pathway allows methylthioadenosine, left over from polyamine biosynthesis, to be recycled to methionine [Amino acid biosynthesis, Aspartate family]. Length = 193
>gnl|CDD|214970 smart01007, Aldolase_II, Class II Aldolase and Adducin N-terminal domain Back     alignment and domain information
>gnl|CDD|216015 pfam00596, Aldolase_II, Class II Aldolase and Adducin N-terminal domain Back     alignment and domain information
>gnl|CDD|223313 COG0235, AraD, Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|180679 PRK06754, mtnB, methylthioribulose-1-phosphate dehydratase; Reviewed Back     alignment and domain information
>gnl|CDD|238232 cd00398, Aldolase_II, Class II Aldolase and Adducin head (N-terminal) domain Back     alignment and domain information
>gnl|CDD|236415 PRK09220, PRK09220, methylthioribulose-1-phosphate dehydratase; Provisional Back     alignment and domain information
>gnl|CDD|181241 PRK08130, PRK08130, putative aldolase; Validated Back     alignment and domain information
>gnl|CDD|183870 PRK13145, araD, L-ribulose-5-phosphate 4-epimerase; Provisional Back     alignment and domain information
>gnl|CDD|188107 TIGR01086, fucA, L-fuculose phosphate aldolase Back     alignment and domain information
>gnl|CDD|181226 PRK08087, PRK08087, L-fuculose phosphate aldolase; Provisional Back     alignment and domain information
>gnl|CDD|238232 cd00398, Aldolase_II, Class II Aldolase and Adducin head (N-terminal) domain Back     alignment and domain information
>gnl|CDD|183460 PRK12348, sgaE, L-ribulose-5-phosphate 4-epimerase; Reviewed Back     alignment and domain information
>gnl|CDD|236181 PRK08193, araD, L-ribulose-5-phosphate 4-epimerase; Reviewed Back     alignment and domain information
>gnl|CDD|235829 PRK06557, PRK06557, L-ribulose-5-phosphate 4-epimerase; Validated Back     alignment and domain information
>gnl|CDD|102532 PRK06755, PRK06755, hypothetical protein; Validated Back     alignment and domain information
>gnl|CDD|180717 PRK06833, PRK06833, L-fuculose phosphate aldolase; Provisional Back     alignment and domain information
>gnl|CDD|129843 TIGR00760, araD, L-ribulose-5-phosphate 4-epimerase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 262
PRK06833214 L-fuculose phosphate aldolase; Provisional 100.0
PRK08087215 L-fuculose phosphate aldolase; Provisional 100.0
PRK05874217 L-fuculose-phosphate aldolase; Validated 100.0
PRK06557221 L-ribulose-5-phosphate 4-epimerase; Validated 100.0
cd00398209 Aldolase_II Class II Aldolase and Adducin head (N- 100.0
PRK12348228 sgaE L-ribulose-5-phosphate 4-epimerase; Reviewed 100.0
TIGR00760231 araD L-ribulose-5-phosphate 4-epimerase. The homol 100.0
TIGR01086214 fucA L-fuculose phosphate aldolase. Members of thi 100.0
PRK05834194 hypothetical protein; Provisional 100.0
PRK08130213 putative aldolase; Validated 100.0
PRK06357216 hypothetical protein; Provisional 100.0
PRK08193231 araD L-ribulose-5-phosphate 4-epimerase; Reviewed 100.0
PRK06754208 mtnB methylthioribulose-1-phosphate dehydratase; R 100.0
PRK08333184 L-fuculose phosphate aldolase; Provisional 100.0
PRK13213231 araD L-ribulose-5-phosphate 4-epimerase; Reviewed 100.0
PRK12347231 sgbE L-ribulose-5-phosphate 4-epimerase; Reviewed 100.0
PRK13145234 araD L-ribulose-5-phosphate 4-epimerase; Provision 100.0
PRK09220204 methylthioribulose-1-phosphate dehydratase; Provis 100.0
PRK07490245 hypothetical protein; Provisional 100.0
PRK06486262 hypothetical protein; Provisional 100.0
PRK08660181 L-fuculose phosphate aldolase; Provisional 100.0
PRK06755209 hypothetical protein; Validated 100.0
PRK06661231 hypothetical protein; Provisional 100.0
TIGR03328193 salvage_mtnB methylthioribulose-1-phosphate dehydr 100.0
PRK06208274 hypothetical protein; Provisional 100.0
PRK07044252 aldolase II superfamily protein; Provisional 100.0
PRK07090260 class II aldolase/adducin domain protein; Provisio 100.0
COG0235219 AraD Ribulose-5-phosphate 4-epimerase and related 100.0
PRK03634274 rhamnulose-1-phosphate aldolase; Provisional 100.0
PF00596184 Aldolase_II: Class II Aldolase and Adducin N-termi 100.0
TIGR02624270 rhamnu_1P_ald rhamnulose-1-phosphate aldolase. Mem 100.0
KOG2631|consensus238 100.0
PRK08324 681 short chain dehydrogenase; Validated 99.96
TIGR02632 676 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc 99.96
COG3347 404 Uncharacterized conserved protein [Function unknow 99.81
KOG3699|consensus 598 99.5
KOG3699|consensus598 97.99
>PRK06833 L-fuculose phosphate aldolase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.9e-47  Score=330.30  Aligned_cols=192  Identities=27%  Similarity=0.344  Sum_probs=166.1

Q ss_pred             CCcchHHhHHHHHHHHHHHcCCcccCCCceeEEeC--CeEEEccCCCCCCCCCCCCEEEEeCCCCeecCCCCCCCCCCCc
Q psy13497         12 SHPEHPRNLIPELCKQFYHLGWVTGTGGGMTIKLG--DEIYIAPSGVQKERLTSKDLFVQDMEGKDLQLPEDKTLKKSQC   89 (262)
Q Consensus        12 ~~~~~~r~~l~~~~r~l~~~gl~~~~~GniSvR~~--d~~lItpsG~~~~~l~~~div~vd~dg~~v~g~~~~~~~pS~E   89 (262)
                      ++.+++|++|++++|+++++||+.+++||||+|++  +.|||||||.++++++++||++||+||++++|.    .+||+|
T Consensus         1 ~~~~~~r~~i~~~~~~l~~~gl~~g~~GniS~r~~~~~~~~ItpsG~~~~~l~~~div~vd~~g~~i~g~----~~ps~E   76 (214)
T PRK06833          1 MLLQKEREEIVAYGKKLISSGLTKGTGGNISIFNREQGLMAITPSGIDYFEIKPEDIVIMDLDGKVVEGE----RKPSSE   76 (214)
T ss_pred             CchHHHHHHHHHHHHHHHHcCCCCCCCceEEEEeCCCCEEEEcCCCCChhhCCHHHEEEEcCCCCCcCCC----CCCCcc
Confidence            35677899999999999999999999999999985  579999999999999999999999999999874    689999


Q ss_pred             HHHHHHHHhhC-CccEEEEcCchHHHHHHhccCCCcchhhhhccccchhhhhhhhhhhhhhhhhhhcccceeecchHHHH
Q psy13497         90 TPLFMCSYTLR-NAGAVIHTHSKAAVLVTMLYPGNVSIELVSSYLGNIFQLKFFVQFTYNWYLVAYCWSNVFRIAYQEMI  168 (262)
Q Consensus        90 ~~lH~~Iy~~r-dv~aViHtH~~~~~a~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  168 (262)
                      +.+|+.||++| |++||||+||+|+++||++.  . ++|++                   .+..+++             
T Consensus        77 ~~lH~~iy~~rpdv~aVvH~H~~~a~a~s~~~--~-~lp~~-------------------~~~~~~~-------------  121 (214)
T PRK06833         77 LDMHLIFYRNREDINAIVHTHSPYATTLACLG--W-ELPAV-------------------HYLIAVA-------------  121 (214)
T ss_pred             HHHHHHHHHhCCCCCEEEEeCcHHHHHHHHcC--C-CCCcc-------------------hhHHHHH-------------
Confidence            99999999999 99999999999999999986  3 34421                   1111111             


Q ss_pred             hccccccCcccccCCCceeeeeecC-CCCcHHHHHHHHHHHhcCCCCcEEEEcCCcceEecCCHHHHHHHHHHHHHHHHH
Q psy13497        169 KGTWNSTLGRYNRYDEELVVPIIEN-TPQEKDLRDSLERALVEFPSTSAVLVRRHGVYVWGGDWKSTKTQTECYDYLFEL  247 (262)
Q Consensus       169 ~~~~~~~~g~~~~~~~~~~vp~~~~-~~gs~ela~~v~~~l~~~~~~~avll~nHG~~~~G~sl~eA~~~~e~lE~~a~~  247 (262)
                              |        ..||+.++ .+++.++++.++++|++   .+++||+|||+++||+|+++|+++++++|++|++
T Consensus       122 --------~--------~~i~~~~y~~~gs~~la~~v~~~l~~---~~~vll~nHGv~~~G~~~~eA~~~~e~lE~~a~~  182 (214)
T PRK06833        122 --------G--------PNVRCAEYATFGTKELAENAFEAMED---RRAVLLANHGLLAGANNLKNAFNIAEEIEFCAEI  182 (214)
T ss_pred             --------C--------CCeeeccCCCCChHHHHHHHHHHhCc---CCEEEECCCCCEEEeCCHHHHHHHHHHHHHHHHH
Confidence                    0        12555544 68999999999999987   7999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCC
Q psy13497        248 AVSMKQLGLNPLSP  261 (262)
Q Consensus       248 ~~~a~~~G~~~~~~  261 (262)
                      ++.++++|.+..++
T Consensus       183 ~~~a~~~G~~~~l~  196 (214)
T PRK06833        183 YYQTKSIGEPKLLP  196 (214)
T ss_pred             HHHHHhcCCCCCCC
Confidence            99999999765544

>PRK08087 L-fuculose phosphate aldolase; Provisional Back     alignment and domain information
>PRK05874 L-fuculose-phosphate aldolase; Validated Back     alignment and domain information
>PRK06557 L-ribulose-5-phosphate 4-epimerase; Validated Back     alignment and domain information
>cd00398 Aldolase_II Class II Aldolase and Adducin head (N-terminal) domain Back     alignment and domain information
>PRK12348 sgaE L-ribulose-5-phosphate 4-epimerase; Reviewed Back     alignment and domain information
>TIGR00760 araD L-ribulose-5-phosphate 4-epimerase Back     alignment and domain information
>TIGR01086 fucA L-fuculose phosphate aldolase Back     alignment and domain information
>PRK05834 hypothetical protein; Provisional Back     alignment and domain information
>PRK08130 putative aldolase; Validated Back     alignment and domain information
>PRK06357 hypothetical protein; Provisional Back     alignment and domain information
>PRK08193 araD L-ribulose-5-phosphate 4-epimerase; Reviewed Back     alignment and domain information
>PRK06754 mtnB methylthioribulose-1-phosphate dehydratase; Reviewed Back     alignment and domain information
>PRK08333 L-fuculose phosphate aldolase; Provisional Back     alignment and domain information
>PRK13213 araD L-ribulose-5-phosphate 4-epimerase; Reviewed Back     alignment and domain information
>PRK12347 sgbE L-ribulose-5-phosphate 4-epimerase; Reviewed Back     alignment and domain information
>PRK13145 araD L-ribulose-5-phosphate 4-epimerase; Provisional Back     alignment and domain information
>PRK09220 methylthioribulose-1-phosphate dehydratase; Provisional Back     alignment and domain information
>PRK07490 hypothetical protein; Provisional Back     alignment and domain information
>PRK06486 hypothetical protein; Provisional Back     alignment and domain information
>PRK08660 L-fuculose phosphate aldolase; Provisional Back     alignment and domain information
>PRK06755 hypothetical protein; Validated Back     alignment and domain information
>PRK06661 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03328 salvage_mtnB methylthioribulose-1-phosphate dehydratase Back     alignment and domain information
>PRK06208 hypothetical protein; Provisional Back     alignment and domain information
>PRK07044 aldolase II superfamily protein; Provisional Back     alignment and domain information
>PRK07090 class II aldolase/adducin domain protein; Provisional Back     alignment and domain information
>COG0235 AraD Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK03634 rhamnulose-1-phosphate aldolase; Provisional Back     alignment and domain information
>PF00596 Aldolase_II: Class II Aldolase and Adducin N-terminal domain; InterPro: IPR001303 This entry represents the alpha/beta/alpha domain found in class II aldolases and adducin, usually at the N terminus Back     alignment and domain information
>TIGR02624 rhamnu_1P_ald rhamnulose-1-phosphate aldolase Back     alignment and domain information
>KOG2631|consensus Back     alignment and domain information
>PRK08324 short chain dehydrogenase; Validated Back     alignment and domain information
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase Back     alignment and domain information
>COG3347 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3699|consensus Back     alignment and domain information
>KOG3699|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query262
2irp_A208 Crystal Structure Of The L-fuculose-1-phosphate Ald 2e-08
1e47_P215 L-Fuculose 1-Phosphate Aldolase From Escherichia Co 9e-06
1e48_P215 L-Fuculose 1-Phosphate Aldolase From Escherichia Co 9e-06
1e4c_P215 L-Fuculose 1-Phosphate Aldolase From Escherichia Co 2e-05
1fua_A215 L-Fuculose 1-Phosphate Aldolase Crystal Form T Leng 2e-05
1dzy_P215 L-Fuculose-1-Phosphate Aldolase From Escherichia Co 2e-05
1dzz_P215 L-Fuculose-1-Phosphate Aldolase From Escherichia Co 2e-05
1dzx_P215 L-Fuculose-1-Phosphate Aldolase From Escherichia Co 2e-05
1dzv_P215 L-Fuculose-1-Phosphate Aldolase From Escherichia Co 2e-05
1dzw_P215 L-Fuculose-1-Phosphate Aldolase From Escherichia Co 2e-05
1e46_P215 L-Fuculose 1-Phosphate Aldolase From Escherichia Co 4e-05
1e4b_P215 L-Fuculose 1-Phosphate Aldolase From Escherichia Co 4e-05
1e49_P215 L-Fuculose 1-Phosphate Aldolase From Escherichia Co 6e-05
1dzu_P215 L-Fuculose-1-Phosphate Aldolase From Escherichia Co 7e-05
2fk5_A200 Crystal Structure Of L-Fuculose-1-Phosphate Aldolas 6e-04
1e4a_P214 L-Fuculose 1-Phosphate Aldolase From Escherichia Co 7e-04
>pdb|2IRP|A Chain A, Crystal Structure Of The L-fuculose-1-phosphate Aldolase (aq_1979) From Aquifex Aeolicus Vf5 Length = 208 Back     alignment and structure 
Iteration: 1

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 90/234 (38%), Gaps = 49/234 (20%)
Query: 21  IPELCKQFYHLGWVTGTGGGMTIKLGDE-IYIAPSGVQKERLTSKDLFVQDMEGKDL--Q 77
           I E  +  +  GWV  T G ++ K+ +E I I  SG  K +LT +D+ + D EG+ +   
Sbjct: 16  IIEAGRILHSRGWVPATSGNISAKVSEEYIAITASGKHKGKLTPEDILLIDYEGRPVGGG 75
Query: 78  LPEDKTLKKSQCTPLFMCSYTLRNAGAVIHTHSKAAVLVTMLYPGNVSIELVSSYLGNIF 137
            P  +TL  +    LF          AV+HTHS  A +++                  I 
Sbjct: 76  KPSAETLLHTTVYKLF------PEVNAVVHTHSPNATVIS------------------IV 111
Query: 138 QLKFFVQFTYNWYLVAYCWSNVFRIAYQEMIKGTWNSTLGRYNRYDEELVVPIIENTPQE 197
           + K FV+      L A+                         + ++ ++ +PI  N    
Sbjct: 112 EKKDFVELEDYELLKAFP----------------------DIHTHEVKIKIPIFPNEQNI 149
Query: 198 KDLRDSLERALVEFPSTSAVLVRRHGVYVWGGDWKSTKTQTECYDYLFELAVSM 251
             L   +E            L+R HG+Y WG   +     TE  +++FE  + +
Sbjct: 150 PLLAKEVENYFKTSEDKYGFLIRGHGLYTWGRSXEEALIHTEALEFIFECELKL 203
>pdb|1E47|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli Mutant E73q Length = 215 Back     alignment and structure
>pdb|1E48|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli Mutant E73qY113FY209F Length = 215 Back     alignment and structure
>pdb|1E4C|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli Mutant S71q Length = 215 Back     alignment and structure
>pdb|1FUA|A Chain A, L-Fuculose 1-Phosphate Aldolase Crystal Form T Length = 215 Back     alignment and structure
>pdb|1DZY|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli Mutant E214a Length = 215 Back     alignment and structure
>pdb|1DZZ|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli Mutant Y113f Length = 215 Back     alignment and structure
>pdb|1DZX|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli Mutant R212a Length = 215 Back     alignment and structure
>pdb|1DZV|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli Mutant Y113fY209F Length = 215 Back     alignment and structure
>pdb|1DZW|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli Mutant F131a Length = 215 Back     alignment and structure
>pdb|1E46|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli Mutant E73s Length = 215 Back     alignment and structure
>pdb|1E4B|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli Mutant N29q Length = 215 Back     alignment and structure
>pdb|1E49|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli Mutant N29lS71A Length = 215 Back     alignment and structure
>pdb|1DZU|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli Mutant T26a Length = 215 Back     alignment and structure
>pdb|2FK5|A Chain A, Crystal Structure Of L-Fuculose-1-Phosphate Aldolase From Thermus Thermophilus Hb8 Length = 200 Back     alignment and structure
>pdb|1E4A|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli Mutant Del(27) Length = 214 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query262
2irp_A208 Putative aldolase class 2 protein AQ_1979; aldehyd 1e-66
1k0w_A231 L-ribulose 5 phosphate 4-epimerase; aldolase, isom 4e-20
2fk5_A200 Fuculose-1-phosphate aldolase; class II aldolase, 1e-18
2fk5_A200 Fuculose-1-phosphate aldolase; class II aldolase, 2e-05
2opi_A212 L-fuculose-1-phosphate aldolase; L-fuculose-1-phos 1e-15
1e4c_P215 L-fuculose 1-phosphate aldolase; aldolase (class I 1e-14
1pvt_A238 Sugar-phosphate aldolase; structural genomics, PSI 6e-12
2v9l_A274 Rhamnulose-1-phosphate aldolase; entropy index, me 4e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>2irp_A Putative aldolase class 2 protein AQ_1979; aldehyde, enzymatic mechanism; 2.40A {Aquifex aeolicus} Length = 208 Back     alignment and structure
 Score =  204 bits (522), Expect = 1e-66
 Identities = 54/257 (21%), Positives = 92/257 (35%), Gaps = 52/257 (20%)

Query: 1   MSSNEIAKVEESHPEHPRNLIPELCKQFYHLGWVTGTGGGMTIKLGDE-IYIAPSGVQKE 59
           M+     K  E         I E  +  +  GWV  T G ++ K+ +E I I  SG  K 
Sbjct: 1   MNVELFKKFSE-----KVEEIIEAGRILHSRGWVPATSGNISAKVSEEYIAITASGKHKG 55

Query: 60  RLTSKDLFVQDMEGKDLQLPEDKTLKKSQCTPLFMCSYTLR-NAGAVIHTHSKAAVLVTM 118
           +LT +D+ + D EG+ +        K S  T L    Y L     AV+HTHS  A ++++
Sbjct: 56  KLTPEDILLIDYEGRPV-----GGGKPSAETLLHTTVYKLFPEVNAVVHTHSPNATVISI 110

Query: 119 LYPGNVSIELVSSYLGNIFQLKFFVQFTYNWYLVAYCWSNVFRIAYQEMIKGTWNSTLGR 178
           +                                      +   +   E++K         
Sbjct: 111 VEKK-----------------------------------DFVELEDYELLKA-----FPD 130

Query: 179 YNRYDEELVVPIIENTPQEKDLRDSLERALVEFPSTSAVLVRRHGVYVWGGDWKSTKTQT 238
            + ++ ++ +PI  N      L   +E            L+R HG+Y WG   +     T
Sbjct: 131 IHTHEVKIKIPIFPNEQNIPLLAKEVENYFKTSEDKYGFLIRGHGLYTWGRSMEEALIHT 190

Query: 239 ECYDYLFELAVSMKQLG 255
           E  +++FE  + +    
Sbjct: 191 EALEFIFECELKLLSFH 207
>1k0w_A L-ribulose 5 phosphate 4-epimerase; aldolase, isomerase; 2.10A {Escherichia coli} SCOP: c.74.1.1 PDB: 1jdi_A Length = 231 Back     alignment and structure
>2fk5_A Fuculose-1-phosphate aldolase; class II aldolase, metal binding, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2flf_A Length = 200 Back     alignment and structure
>2fk5_A Fuculose-1-phosphate aldolase; class II aldolase, metal binding, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2flf_A Length = 200 Back     alignment and structure
>2opi_A L-fuculose-1-phosphate aldolase; L-fuculose-1-phosphate aldolas structural genomics, PSI-2, protein structure initiative; 2.50A {Bacteroides thetaiotaomicron} Length = 212 Back     alignment and structure
>1e4c_P L-fuculose 1-phosphate aldolase; aldolase (class II), bacterial L-fucose metabolism; 1.66A {Escherichia coli} SCOP: c.74.1.1 PDB: 1fua_A 2fua_A 3fua_A 4fua_A* 1dzv_P 1e4b_P 1e47_P* 1e48_P* 1dzz_P 1e46_P 1dzu_P 1dzy_P 1dzx_P 1dzw_P 1e49_P 1e4a_P Length = 215 Back     alignment and structure
>1pvt_A Sugar-phosphate aldolase; structural genomics, PSI, protein initiative, midwest center for structural genomics, MCSG; 2.50A {Thermotoga maritima} SCOP: c.74.1.1 Length = 238 Back     alignment and structure
>2v9l_A Rhamnulose-1-phosphate aldolase; entropy index, metal-binding, oligomerization, zinc, lyase, class II, cytoplasm; HET: PGO; 1.23A {Escherichia coli} PDB: 2uyv_A* 1ojr_A 2v9g_A* 1gt7_A* 2v9n_A* 2uyu_A* 2v9m_A* 2v9o_A 2v9e_A 2v9f_A 2v9i_A 2v29_A 2v2a_A* 2v2b_A Length = 274 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query262
1e4c_P215 L-fuculose 1-phosphate aldolase; aldolase (class I 100.0
2irp_A208 Putative aldolase class 2 protein AQ_1979; aldehyd 100.0
2opi_A212 L-fuculose-1-phosphate aldolase; L-fuculose-1-phos 100.0
2fk5_A200 Fuculose-1-phosphate aldolase; class II aldolase, 100.0
1k0w_A231 L-ribulose 5 phosphate 4-epimerase; aldolase, isom 100.0
3ocr_A273 Class II aldolase/adducin domain protein; PSI-2, m 100.0
1pvt_A238 Sugar-phosphate aldolase; structural genomics, PSI 100.0
2v9l_A274 Rhamnulose-1-phosphate aldolase; entropy index, me 100.0
2z7b_A270 MLR6791 protein; class II aldolase superfamily, ly 100.0
3m4r_A222 Uncharacterized protein; short chain dehydrogenase 100.0
>1e4c_P L-fuculose 1-phosphate aldolase; aldolase (class II), bacterial L-fucose metabolism; 1.66A {Escherichia coli} SCOP: c.74.1.1 PDB: 1fua_A 2fua_A 3fua_A 4fua_A* 1dzv_P 1e4b_P 1e47_P* 1e48_P* 1dzz_P 1e46_P 1dzu_P 1dzy_P 1dzx_P 1dzw_P 1e49_P 1e4a_P Back     alignment and structure
Probab=100.00  E-value=1.8e-47  Score=331.26  Aligned_cols=188  Identities=22%  Similarity=0.315  Sum_probs=165.7

Q ss_pred             CCcchHHhHHHHHHHHHHHcCCcccCCCceeEEeCCeEEEccCCCCCCCCCCCCEEEEeCCCCeecCCCCCCCCCCCcHH
Q psy13497         12 SHPEHPRNLIPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQKERLTSKDLFVQDMEGKDLQLPEDKTLKKSQCTP   91 (262)
Q Consensus        12 ~~~~~~r~~l~~~~r~l~~~gl~~~~~GniSvR~~d~~lItpsG~~~~~l~~~div~vd~dg~~v~g~~~~~~~pS~E~~   91 (262)
                      |..+++|++|++++|+|+++||+.+++||||+|+++.|||||||.++++++++||++||+||++++|.     +||+|+.
T Consensus         1 m~~~~~r~~l~~~~r~l~~~gl~~~~~GNiS~R~~~~~lItpsG~~~~~l~~~dlv~vd~~G~~~~g~-----~pSse~~   75 (215)
T 1e4c_P            1 MERNKLARQIIDTCLEMTRLGLNQGTAGNVSVRYQDGMLITPTGIPYEKLTESHIVFIDGNGKHEEGK-----LPQSEWR   75 (215)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTSCCTTCCEEEEEETTEEEECCTTCCGGGCCGGGCEEECTTCCBCTTC-----CCCTTHH
T ss_pred             CCHHHHHHHHHHHHHHHHHCcCCCCCCCeEEEEeCCcEEEeCCCCCcccCCHHHEEEEcCCCCCCCCC-----CCChHHH
Confidence            34567999999999999999999999999999999999999999999999999999999999999873     5999999


Q ss_pred             HHHHHHhhC-CccEEEEcCchHHHHHHhccCCCcchhhhhccccchhhhhhhhhhhhhhhhhhhcccceeecchHHHHhc
Q psy13497         92 LFMCSYTLR-NAGAVIHTHSKAAVLVTMLYPGNVSIELVSSYLGNIFQLKFFVQFTYNWYLVAYCWSNVFRIAYQEMIKG  170 (262)
Q Consensus        92 lH~~Iy~~r-dv~aViHtH~~~~~a~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  170 (262)
                      +|+.||++| |++||+|+||+|+++||++..   ++|+                   ++++...++.             
T Consensus        76 lH~~iy~~rpdv~aVvHtHs~~~~a~s~~~~---~l~~-------------------~~~~~~~~~~-------------  120 (215)
T 1e4c_P           76 FHMAAYQSRPDANAVVHNHAVHCTAVSILNR---SIPA-------------------IHYMIAAAGG-------------  120 (215)
T ss_dssp             HHHHHHHHCTTCCEEEEECCHHHHHHHHHTC---CBCS-------------------SSGGGGGGTS-------------
T ss_pred             HHHHHHHhCCCCCEEEEcCcHHHHHHHHhCC---CCCc-------------------ccHHHHHhCC-------------
Confidence            999999999 999999999999999999963   3332                   2222221110             


Q ss_pred             cccccCcccccCCCceeeeeecC-CCCcHHHHHHHHHHHhcCCCCcEEEEcCCcceEecCCHHHHHHHHHHHHHHHHHHH
Q psy13497        171 TWNSTLGRYNRYDEELVVPIIEN-TPQEKDLRDSLERALVEFPSTSAVLVRRHGVYVWGGDWKSTKTQTECYDYLFELAV  249 (262)
Q Consensus       171 ~~~~~~g~~~~~~~~~~vp~~~~-~~gs~ela~~v~~~l~~~~~~~avll~nHG~~~~G~sl~eA~~~~e~lE~~a~~~~  249 (262)
                                     ..||+++| .+|+.+|++.+++++++   .+++||+|||+++||+|+++|+++++.+|++|++++
T Consensus       121 ---------------~~ip~~~y~~~g~~~la~~i~~~l~~---~~avll~nHG~~~~G~~~~eA~~~~~~lE~~a~~~~  182 (215)
T 1e4c_P          121 ---------------NSIPCAPYATFGTRELSEHVALALKN---RKATLLQHHGLIACEVNLEKALWLAHEVEVLAQLYL  182 (215)
T ss_dssp             ---------------SCBCEECCCCTTCHHHHHHHHHHTSS---CSEEEETTTEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------CCcceeeCCCCCcHHHHHHHHHHhcc---CCEEEEcCCCcEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence                           13666766 68999999999999986   799999999999999999999999999999999999


Q ss_pred             HHHhcCCC
Q psy13497        250 SMKQLGLN  257 (262)
Q Consensus       250 ~a~~~G~~  257 (262)
                      .++++|.+
T Consensus       183 ~a~~~g~~  190 (215)
T 1e4c_P          183 TTLAITDP  190 (215)
T ss_dssp             HHHTTCSS
T ss_pred             HHHHcCCC
Confidence            99999976
>2irp_A Putative aldolase class 2 protein AQ_1979; aldehyde, enzymatic mechanism; 2.40A {Aquifex aeolicus} Back     alignment and structure
>2opi_A L-fuculose-1-phosphate aldolase; L-fuculose-1-phosphate aldolas structural genomics, PSI-2, protein structure initiative; 2.50A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2fk5_A Fuculose-1-phosphate aldolase; class II aldolase, metal binding, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2flf_A Back     alignment and structure
>1k0w_A L-ribulose 5 phosphate 4-epimerase; aldolase, isomerase; 2.10A {Escherichia coli} SCOP: c.74.1.1 PDB: 1jdi_A Back     alignment and structure
>3ocr_A Class II aldolase/adducin domain protein; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, lyase; 1.95A {Pseudomonas syringae PV} Back     alignment and structure
>1pvt_A Sugar-phosphate aldolase; structural genomics, PSI, protein initiative, midwest center for structural genomics, MCSG; 2.50A {Thermotoga maritima} SCOP: c.74.1.1 Back     alignment and structure
>2v9l_A Rhamnulose-1-phosphate aldolase; entropy index, metal-binding, oligomerization, zinc, lyase, class II, cytoplasm; HET: PGO; 1.23A {Escherichia coli} PDB: 2uyv_A* 1ojr_A 2v9g_A* 1gt7_A* 2v9n_A* 2uyu_A* 2v9m_A* 2v9o_A 2v9e_A 2v9f_A 2v9i_A 2v29_A 2v2a_A* 2v2b_A Back     alignment and structure
>2z7b_A MLR6791 protein; class II aldolase superfamily, lyase; 1.90A {Mesorhizobium loti} Back     alignment and structure
>3m4r_A Uncharacterized protein; short chain dehydrogenase, class II aldolase, adducin head D carbohydrate metabolism, structural genomics; 2.00A {Thermoplasma acidophilum} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 262
d1k0wa_223 c.74.1.1 (A:) L-ribulose-5-phosphate 4-epimerase { 8e-21
d1pvta_232 c.74.1.1 (A:) Putative sugar-phosphate aldolase {T 2e-20
d1e4cp_206 c.74.1.1 (P:) L-fuculose-1-phosphate aldolase {Esc 5e-13
d1ojra_274 c.74.1.1 (A:) L-rhamnulose-1-phosphate aldolase {E 2e-10
>d1k0wa_ c.74.1.1 (A:) L-ribulose-5-phosphate 4-epimerase {Escherichia coli [TaxId: 562]} Length = 223 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: AraD/HMP-PK domain-like
superfamily: AraD/HMP-PK domain-like
family: AraD-like aldolase/epimerase
domain: L-ribulose-5-phosphate 4-epimerase
species: Escherichia coli [TaxId: 562]

 Score = 85.7 bits (211), Expect = 8e-21
 Identities = 34/250 (13%), Positives = 68/250 (27%), Gaps = 43/250 (17%)

Query: 15  EHPRNLIPELCKQFYHLGWVTGTGGGMTIKLGDE--IYIAPSGVQKERLTSKDLFVQDME 72
           E  +  + E          VT T G ++    +     I PSGV    +T+ D+ V  +E
Sbjct: 3   EDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSIMTADDMVVVSIE 62

Query: 73  GKDLQLPEDKTLKKSQCTPLFMCSYTLRNAGAVIHTHSKAAVLVTMLYPGNVSIELVSSY 132
               ++ E      S      +      + G ++HTHS+ A +                 
Sbjct: 63  TG--EVVEGAKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQS---------- 110

Query: 133 LGNIFQLKFFVQFTYNWYLVAYCWSNVFRIAYQEMIKGTWNSTLGRYNRYDEELVVPIIE 192
                                +       I     +                   +    
Sbjct: 111 --------------IPATGTTHANYFYGTIPCTRKMTD---------------AEINGEY 141

Query: 193 NTPQEKDLRDSLERALVEFPSTSAVLVRRHGVYVWGGDWKSTKTQTECYDYLFELAVSMK 252
                  + ++ E+  ++      VLV  HG + WG + +         + +  + +  +
Sbjct: 142 EWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCR 201

Query: 253 QLGLNPLSPP 262
           QL        
Sbjct: 202 QLAPQLPDMQ 211
>d1pvta_ c.74.1.1 (A:) Putative sugar-phosphate aldolase {Thermotoga maritima [TaxId: 2336]} Length = 232 Back     information, alignment and structure
>d1e4cp_ c.74.1.1 (P:) L-fuculose-1-phosphate aldolase {Escherichia coli [TaxId: 562]} Length = 206 Back     information, alignment and structure
>d1ojra_ c.74.1.1 (A:) L-rhamnulose-1-phosphate aldolase {Escherichia coli [TaxId: 562]} Length = 274 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query262
d1e4cp_206 L-fuculose-1-phosphate aldolase {Escherichia coli 100.0
d1ojra_274 L-rhamnulose-1-phosphate aldolase {Escherichia col 100.0
d1pvta_232 Putative sugar-phosphate aldolase {Thermotoga mari 100.0
d1k0wa_223 L-ribulose-5-phosphate 4-epimerase {Escherichia co 100.0
>d1e4cp_ c.74.1.1 (P:) L-fuculose-1-phosphate aldolase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: AraD/HMP-PK domain-like
superfamily: AraD/HMP-PK domain-like
family: AraD-like aldolase/epimerase
domain: L-fuculose-1-phosphate aldolase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.2e-45  Score=312.31  Aligned_cols=192  Identities=22%  Similarity=0.312  Sum_probs=165.7

Q ss_pred             CCcchHHhHHHHHHHHHHHcCCcccCCCceeEEeCCeEEEccCCCCCCCCCCCCEEEEeCCCCeecCCCCCCCCCCCcHH
Q psy13497         12 SHPEHPRNLIPELCKQFYHLGWVTGTGGGMTIKLGDEIYIAPSGVQKERLTSKDLFVQDMEGKDLQLPEDKTLKKSQCTP   91 (262)
Q Consensus        12 ~~~~~~r~~l~~~~r~l~~~gl~~~~~GniSvR~~d~~lItpsG~~~~~l~~~div~vd~dg~~v~g~~~~~~~pS~E~~   91 (262)
                      |+.+++|++|++++|+|+++||+.+++||||+|++|.|||||||.++++++++|++.||+||+.++|     .+||+|+.
T Consensus         1 m~~~~l~~~l~~~~r~l~~~Gl~~g~~GniS~R~~d~~lIt~sG~~~~~l~~~dlv~v~~~g~~~~g-----~~ps~e~~   75 (206)
T d1e4cp_           1 MERNKLARQIIDTCLEMTRLGLNQGTAGNVSVRYQDGMLITPTGIPYEKLTESHIVFIDGNGKHEEG-----KLPQSEWR   75 (206)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTSCCTTCCEEEEEETTEEEECCTTCCGGGCCGGGCEEECTTCCBCTT-----CCCCTTHH
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEeCCcEEEeCCCCChhhCCHHhccccccccccccc-----cccchhHH
Confidence            4567899999999999999999999999999999999999999999999999999999999998876     47999999


Q ss_pred             HHHHHHhhC-CccEEEEcCchHHHHHHhccCCCcchhhhhccccchhhhhhhhhhhhhhhhhhhcccceeecchHHHHhc
Q psy13497         92 LFMCSYTLR-NAGAVIHTHSKAAVLVTMLYPGNVSIELVSSYLGNIFQLKFFVQFTYNWYLVAYCWSNVFRIAYQEMIKG  170 (262)
Q Consensus        92 lH~~Iy~~r-dv~aViHtH~~~~~a~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  170 (262)
                      +|..||++| |++||+|+||+|++++|+...   ++|+..                   +.             ...+  
T Consensus        76 ~H~~iy~~rpdv~avvH~H~~~~~a~s~~~~---~~~~~~-------------------~~-------------~~~~--  118 (206)
T d1e4cp_          76 FHMAAYQSRPDANAVVHNHAVHCTAVSILNR---SIPAIH-------------------YM-------------IAAA--  118 (206)
T ss_dssp             HHHHHHHHCTTCCEEEEECCHHHHHHHHHTC---CBCSSS-------------------GG-------------GGGG--
T ss_pred             HHHHHHHhccCcceEEEecCcceeeehhhcC---CCCchh-------------------HH-------------HHHH--
Confidence            999999999 999999999999999999963   233210                   00             0000  


Q ss_pred             cccccCcccccCCCceeeeeecC-CCCcHHHHHHHHHHHhcCCCCcEEEEcCCcceEecCCHHHHHHHHHHHHHHHHHHH
Q psy13497        171 TWNSTLGRYNRYDEELVVPIIEN-TPQEKDLRDSLERALVEFPSTSAVLVRRHGVYVWGGDWKSTKTQTECYDYLFELAV  249 (262)
Q Consensus       171 ~~~~~~g~~~~~~~~~~vp~~~~-~~gs~ela~~v~~~l~~~~~~~avll~nHG~~~~G~sl~eA~~~~e~lE~~a~~~~  249 (262)
                       +    |     +   .++++++ .|++.++++.+++++++   ++++||+|||+++||+|+++||++++++|++|++++
T Consensus       119 -~----~-----~---~~~~~~y~~~g~~~~~~~~~~~l~~---~~~~ll~nHG~~~~G~s~~eA~~~~~~lE~~a~~~l  182 (206)
T d1e4cp_         119 -G----G-----N---SIPCAPYATFGTRELSEHVALALKN---RKATLLQHHGLIACEVNLEKALWLAHEVEVLAQLYL  182 (206)
T ss_dssp             -T----S-----S---CBCEECCCCTTCHHHHHHHHHHTSS---CSEEEETTTEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred             -c----C-----C---ceeecCCcCCcchhHHHHHHHHHhc---CCceeecCcccEEEcCCHHHHHHHHHHHHHHHHHHH
Confidence             0    0     1   2445554 68999999999999987   799999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCCC
Q psy13497        250 SMKQLGLNPLSP  261 (262)
Q Consensus       250 ~a~~~G~~~~~~  261 (262)
                      .++++|.+...+
T Consensus       183 ~a~~~G~~~~~l  194 (206)
T d1e4cp_         183 TTLAITDPVPVL  194 (206)
T ss_dssp             HHHTTCSSCCCC
T ss_pred             HHHHcCCCCCCC
Confidence            999999876543
>d1ojra_ c.74.1.1 (A:) L-rhamnulose-1-phosphate aldolase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pvta_ c.74.1.1 (A:) Putative sugar-phosphate aldolase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1k0wa_ c.74.1.1 (A:) L-ribulose-5-phosphate 4-epimerase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure