Psyllid ID: psy13529

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-----
Protein Sequence
MAILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG
Secondary Structure (PSIPRED)
cHHHHHHHHcccccccccccccccHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEcccccccccccEEEccHHHHHccHHHHHHHHHHHHHcccccccccHHHHHHHHccHHHHHHHHccc
Coil and Loop (DISEMBL)
MAILVLLVTNraygpqanssylllppraaqDGMLDILREATKrdcnakdedgmtpTLWAAFQGNLEALRLLVGRG
Flexible Loop (DISEMBL)
MAILVLLVTnraygpqanssylllpPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG
Low Complexity Region (SEG)
MAILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG
Disordered region (IsUnstruct)
**ILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILRE*************MTPTLWAAFQGNLEALRLLV***
Disordered Region (DISOPRED)
MAILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG
Disordered Region (DISEMBL)
MAILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG
Disordered Region (DISPRO)
MAILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	75	2.2.26 [Sep-21-2011]
Q80T11	461	Usher syndrome type-1G pr	yes	N/A	0.653	0.106	0.693	2e-14
Q495M9	461	Usher syndrome type-1G pr	yes	N/A	0.653	0.106	0.693	2e-14
Q8K3X6	423	Ankyrin repeat and SAM do	no	N/A	0.653	0.115	0.632	1e-11
Q8N8V4	417	Ankyrin repeat and SAM do	no	N/A	0.653	0.117	0.632	1e-11

>sp|Q80T11|USH1G_MOUSE Usher syndrome type-1G protein homolog OS=Mus musculus GN=Ush1g PE=1 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/49 (69%), Positives = 44/49 (89%)

Query: 27 RAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          RAA+DG L++L+EAT+++ NA DEDGMTPTLWAA+ GNLE+LRL+V RG
Sbjct: 7  RAARDGYLELLKEATRKELNAPDEDGMTPTLWAAYHGNLESLRLIVSRG 55

Required for normal development and maintenance of cochlear hair cell bundles. Anchoring/scaffolding protein that is a part of the functional network formed by USH1C, USH1G, CDH23 and MYO7A that mediates mechanotransduction in cochlear hair cells. Required for normal hearing.
Mus musculus (taxid: 10090)

>sp|Q495M9|USH1G_HUMAN Usher syndrome type-1G protein OS=Homo sapiens GN=USH1G PE=1 SV=1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/49 (69%), Positives = 44/49 (89%)

Query: 27 RAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          RAA+DG L++L+EAT+++ NA DEDGMTPTLWAA+ GNLE+LRL+V RG
Sbjct: 7  RAARDGYLELLKEATRKELNAPDEDGMTPTLWAAYHGNLESLRLIVSRG 55

Required for normal development and maintenance of cochlear hair cell bundles. Anchoring/scaffolding protein that is a part of the functional network formed by USH1C, USH1G, CDH23 and MYO7A that mediates mechanotransduction in cochlear hair cells. Required for normal hearing.

Homo sapiens (taxid: 9606)

>sp|Q8K3X6|ANS4B_MOUSE Ankyrin repeat and SAM domain-containing protein 4B OS=Mus musculus GN=Anks4b PE=1 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/49 (63%), Positives = 38/49 (77%)

Query: 27 RAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          +AA D  L++L+EATKRD N  DEDGMTPTL AA+ GNLEAL ++  RG
Sbjct: 7  QAASDSYLELLKEATKRDLNLSDEDGMTPTLLAAYHGNLEALEIICSRG 55

Mus musculus (taxid: 10090)

>sp|Q8N8V4|ANS4B_HUMAN Ankyrin repeat and SAM domain-containing protein 4B OS=Homo sapiens GN=ANKS4B PE=2 SV=2

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/49 (63%), Positives = 38/49 (77%)

Query: 27 RAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          +AA D  L++L+EATKRD N  DEDGMTPTL AA+ GNLEAL ++  RG
Sbjct: 7  QAASDSYLELLKEATKRDLNLSDEDGMTPTLLAAYHGNLEALEIICSRG 55

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
328706555	481	PREDICTED: Usher syndrome type-1G protei	0.653	0.101	0.795	5e-17
321477337	472	hypothetical protein DAPPUDRAFT_305682 [	0.653	0.103	0.755	4e-16
270011619	77	hypothetical protein TcasGA2_TC005663 [T	0.653	0.636	0.755	4e-15
383852820	481	PREDICTED: Usher syndrome type-1G protei	0.653	0.101	0.734	6e-15
350412488	489	PREDICTED: Usher syndrome type-1G protei	0.653	0.100	0.755	6e-15
340725111	489	PREDICTED: Usher syndrome type-1G protei	0.653	0.100	0.755	6e-15
383852818	490	PREDICTED: Usher syndrome type-1G protei	0.653	0.1	0.734	7e-15
432868183	472	PREDICTED: Usher syndrome type-1G protei	0.653	0.103	0.755	8e-15
357609043	480	hypothetical protein KGM_13175 [Danaus p	0.653	0.102	0.714	8e-15
47217645	478	unnamed protein product [Tetraodon nigro	0.653	0.102	0.755	1e-14

>gi|328706555|ref|XP_003243130.1| PREDICTED: Usher syndrome type-1G protein homolog [Acyrthosiphon pisum]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/49 (79%), Positives = 48/49 (97%)

Query: 27 RAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          +AAQDG +++L+EATKRDCNAKD+DGMTPTLWAAF+G+LEALR+LVGRG
Sbjct: 7  KAAQDGFVNLLKEATKRDCNAKDDDGMTPTLWAAFKGHLEALRVLVGRG 55

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321477337|gb|EFX88296.1| hypothetical protein DAPPUDRAFT_305682 [Daphnia pulex]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/49 (75%), Positives = 47/49 (95%)

Query: 27 RAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          RAA+DG LDIL+EAT++DCN+KD+DGMTPTLWA F+G+LEALRL++GRG
Sbjct: 7  RAARDGKLDILKEATRKDCNSKDDDGMTPTLWATFEGHLEALRLIIGRG 55

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270011619|gb|EFA08067.1| hypothetical protein TcasGA2_TC005663 [Tribolium castaneum]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/49 (75%), Positives = 45/49 (91%)

Query: 27 RAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          +AA+DGM+++L+EATKRDCN +DE GMTPTL+AAF GNLEALRLL GRG
Sbjct: 8  KAAKDGMIEVLKEATKRDCNGRDEQGMTPTLYAAFYGNLEALRLLCGRG 56

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852820|ref|XP_003701923.1| PREDICTED: Usher syndrome type-1G protein homolog isoform 2 [Megachile rotundata]

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/49 (73%), Positives = 47/49 (95%)

Query: 27 RAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          +AA+DG+LDIL+EATK+DCNA+D+ GMTPTLWAAF+G+++ALRLLV RG
Sbjct: 8  KAARDGVLDILKEATKKDCNARDDGGMTPTLWAAFEGHIDALRLLVARG 56

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350412488|ref|XP_003489664.1| PREDICTED: Usher syndrome type-1G protein homolog [Bombus impatiens]

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 37/49 (75%), Positives = 46/49 (93%)

Query: 27 RAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          RAA+DG LDIL+EATK+DCNA+D+ GMTPTLWAAF+G+++ALRLLV RG
Sbjct: 8  RAARDGALDILKEATKKDCNARDDGGMTPTLWAAFEGHIDALRLLVARG 56

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725111|ref|XP_003400917.1| PREDICTED: Usher syndrome type-1G protein homolog isoform 1 [Bombus terrestris] gi|340725113|ref|XP_003400918.1| PREDICTED: Usher syndrome type-1G protein homolog isoform 2 [Bombus terrestris]

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 37/49 (75%), Positives = 46/49 (93%)

Query: 27 RAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          RAA+DG LDIL+EATK+DCNA+D+ GMTPTLWAAF+G+++ALRLLV RG
Sbjct: 8  RAARDGALDILKEATKKDCNARDDGGMTPTLWAAFEGHIDALRLLVARG 56

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852818|ref|XP_003701922.1| PREDICTED: Usher syndrome type-1G protein homolog isoform 1 [Megachile rotundata]

 Score = 84.7 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/49 (73%), Positives = 47/49 (95%)

Query: 27 RAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          +AA+DG+LDIL+EATK+DCNA+D+ GMTPTLWAAF+G+++ALRLLV RG
Sbjct: 8  KAARDGVLDILKEATKKDCNARDDGGMTPTLWAAFEGHIDALRLLVARG 56

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|432868183|ref|XP_004071452.1| PREDICTED: Usher syndrome type-1G protein homolog [Oryzias latipes]

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 37/49 (75%), Positives = 44/49 (89%)

Query: 27 RAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          RAA+DG LD+L+EAT++D NA DEDGMTPTLWAA+ GNLEALRL+V RG
Sbjct: 7  RAARDGYLDLLKEATRKDLNAPDEDGMTPTLWAAYHGNLEALRLIVARG 55

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|357609043|gb|EHJ66264.1| hypothetical protein KGM_13175 [Danaus plexippus]

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 35/49 (71%), Positives = 46/49 (93%)

Query: 27 RAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          +AA+DG+L++LREAT+++CN KDE GMTPTLWAAF+G++EALRLL GRG
Sbjct: 8  KAAKDGLLEVLREATRKECNNKDESGMTPTLWAAFEGHIEALRLLCGRG 56

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|47217645|emb|CAG03042.1| unnamed protein product [Tetraodon nigroviridis]

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/49 (75%), Positives = 45/49 (91%)

Query: 27 RAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          RAA+DG LD+L+EAT+++ NA DEDGMTPTLWAA+ GNLEALRL+VGRG
Sbjct: 8  RAARDGYLDVLKEATRKELNAPDEDGMTPTLWAAYHGNLEALRLIVGRG 56

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
UNIPROTKB|E1C0X4	469	USH1G "Uncharacterized protein	0.653	0.104	0.734	4.6e-15
UNIPROTKB|F1PVU5	456	USH1G "Uncharacterized protein	0.653	0.107	0.693	3.2e-14
UNIPROTKB|Q495M9	461	USH1G "Usher syndrome type-1G	0.653	0.106	0.693	3.3e-14
UNIPROTKB|F1RVV1	461	USH1G "Uncharacterized protein	0.653	0.106	0.693	3.3e-14
MGI|MGI:2450757	461	Ush1g "Usher syndrome 1G" [Mus	0.653	0.106	0.693	3.3e-14
RGD|1304551	461	Ush1g "Usher syndrome 1G" [Rat	0.653	0.106	0.693	3.3e-14
UNIPROTKB|E1BFU2	462	USH1G "Uncharacterized protein	0.653	0.106	0.693	3.3e-14
FB|FBgn0033785	516	Sans "Sans ortholog" [Drosophi	0.653	0.094	0.653	5.1e-13
ZFIN|ZDB-GENE-040704-29	422	anks4b "ankyrin repeat and ste	0.653	0.116	0.632	1.9e-12
UNIPROTKB|Q1JQD8	412	ANKS4B "Uncharacterized protei	0.653	0.118	0.632	2.3e-11

UNIPROTKB|E1C0X4 USH1G "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 198 (74.8 bits), Expect = 4.6e-15, P = 4.6e-15
 Identities = 36/49 (73%), Positives = 44/49 (89%)

Query:    27 RAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
             RAA+DG LD+L+EATK+D N+ DEDGMTPTLWAA+ GNL+ALRL+V RG
Sbjct:     7 RAARDGYLDLLKEATKKDLNSPDEDGMTPTLWAAYHGNLDALRLIVSRG 55

GO:0005737 "cytoplasm" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0042472 "inner ear morphogenesis" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0045494 "photoreceptor cell maintenance" evidence=IEA

GO:0050957 "equilibrioception" evidence=IEA

GO:0060113 "inner ear receptor cell differentiation" evidence=IEA

UNIPROTKB|F1PVU5 USH1G "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 190 (71.9 bits), Expect = 3.2e-14, P = 3.2e-14
 Identities = 34/49 (69%), Positives = 44/49 (89%)

Query:    27 RAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
             RAA+DG L++L+EAT+++ NA DEDGMTPTLWAA+ GNLE+LRL+V RG
Sbjct:     7 RAARDGYLELLKEATRKELNAPDEDGMTPTLWAAYHGNLESLRLIVSRG 55

GO:0060113 "inner ear receptor cell differentiation" evidence=IEA

GO:0050957 "equilibrioception" evidence=IEA

GO:0045494 "photoreceptor cell maintenance" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042472 "inner ear morphogenesis" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q495M9 USH1G "Usher syndrome type-1G protein" [Homo sapiens (taxid:9606)]

 Score = 190 (71.9 bits), Expect = 3.3e-14, P = 3.3e-14
 Identities = 34/49 (69%), Positives = 44/49 (89%)

Query:    27 RAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
             RAA+DG L++L+EAT+++ NA DEDGMTPTLWAA+ GNLE+LRL+V RG
Sbjct:     7 RAARDGYLELLKEATRKELNAPDEDGMTPTLWAAYHGNLESLRLIVSRG 55

GO:0042472 "inner ear morphogenesis" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0060113 "inner ear receptor cell differentiation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0050953 "sensory perception of light stimulus" evidence=IMP

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0045494 "photoreceptor cell maintenance" evidence=IMP

GO:0015629 "actin cytoskeleton" evidence=ISS

GO:0050957 "equilibrioception" evidence=IMP

UNIPROTKB|F1RVV1 USH1G "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 190 (71.9 bits), Expect = 3.3e-14, P = 3.3e-14
 Identities = 34/49 (69%), Positives = 44/49 (89%)

Query:    27 RAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
             RAA+DG L++L+EAT+++ NA DEDGMTPTLWAA+ GNLE+LRL+V RG
Sbjct:     7 RAARDGYLELLKEATRKELNAPDEDGMTPTLWAAYHGNLESLRLIVSRG 55

GO:0060113 "inner ear receptor cell differentiation" evidence=IEA

GO:0050957 "equilibrioception" evidence=IEA

GO:0045494 "photoreceptor cell maintenance" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042472 "inner ear morphogenesis" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:2450757 Ush1g "Usher syndrome 1G" [Mus musculus (taxid:10090)]

 Score = 190 (71.9 bits), Expect = 3.3e-14, P = 3.3e-14
 Identities = 34/49 (69%), Positives = 44/49 (89%)

Query:    27 RAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
             RAA+DG L++L+EAT+++ NA DEDGMTPTLWAA+ GNLE+LRL+V RG
Sbjct:     7 RAARDGYLELLKEATRKELNAPDEDGMTPTLWAAYHGNLESLRLIVSRG 55

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=ISO;IMP

GO:0015629 "actin cytoskeleton" evidence=IDA

GO:0016020 "membrane" evidence=ISS

GO:0042472 "inner ear morphogenesis" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0045494 "photoreceptor cell maintenance" evidence=ISO

GO:0050953 "sensory perception of light stimulus" evidence=ISO

GO:0050957 "equilibrioception" evidence=ISO

GO:0060113 "inner ear receptor cell differentiation" evidence=IMP

RGD|1304551 Ush1g "Usher syndrome 1G" [Rattus norvegicus (taxid:10116)]

 Score = 190 (71.9 bits), Expect = 3.3e-14, P = 3.3e-14
 Identities = 34/49 (69%), Positives = 44/49 (89%)

Query:    27 RAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
             RAA+DG L++L+EAT+++ NA DEDGMTPTLWAA+ GNLE+LRL+V RG
Sbjct:     7 RAARDGYLELLKEATRKELNAPDEDGMTPTLWAAYHGNLESLRLIVSRG 55

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0007605 "sensory perception of sound" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0015629 "actin cytoskeleton" evidence=IEA;ISO

GO:0042472 "inner ear morphogenesis" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0045494 "photoreceptor cell maintenance" evidence=IEA;ISO

GO:0050953 "sensory perception of light stimulus" evidence=ISO

GO:0050957 "equilibrioception" evidence=IEA;ISO

GO:0060113 "inner ear receptor cell differentiation" evidence=IEA;ISO

UNIPROTKB|E1BFU2 USH1G "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 190 (71.9 bits), Expect = 3.3e-14, P = 3.3e-14
 Identities = 34/49 (69%), Positives = 44/49 (89%)

Query:    27 RAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
             RAA+DG L++L+EAT+++ NA DEDGMTPTLWAA+ GNLE+LRL+V RG
Sbjct:     7 RAARDGYLELLKEATRKELNAPDEDGMTPTLWAAYHGNLESLRLIVSRG 55

GO:0060113 "inner ear receptor cell differentiation" evidence=IEA

GO:0050957 "equilibrioception" evidence=IEA

GO:0045494 "photoreceptor cell maintenance" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042472 "inner ear morphogenesis" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

FB|FBgn0033785 Sans "Sans ortholog" [Drosophila melanogaster (taxid:7227)]

 Score = 180 (68.4 bits), Expect = 5.1e-13, P = 5.1e-13
 Identities = 32/49 (65%), Positives = 41/49 (83%)

Query:    27 RAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
             +AA+DG+LD+L  AT++D NAKD D MTP +WAAF+G L+ALRLL GRG
Sbjct:     8 KAAKDGLLDVLAAATRKDTNAKDSDSMTPVMWAAFEGRLDALRLLCGRG 56

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005737 "cytoplasm" evidence=ISS

GO:0005769 "early endosome" evidence=IDA

ZFIN|ZDB-GENE-040704-29 anks4b "ankyrin repeat and sterile alpha motif domain containing 4B" [Danio rerio (taxid:7955)]

 Score = 173 (66.0 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 31/49 (63%), Positives = 41/49 (83%)

Query:    27 RAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
             +AA DG LD+L+EAT++D N  DEDGMTPTLWAA+ G++EAL+L+  RG
Sbjct:     6 KAAIDGYLDLLKEATRKDLNTPDEDGMTPTLWAAYHGHIEALQLVCSRG 54

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q1JQD8 ANKS4B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 163 (62.4 bits), Expect = 2.3e-11, P = 2.3e-11
 Identities = 31/49 (63%), Positives = 38/49 (77%)

Query:    27 RAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
             +AA D  L++L+EATKRD N  DEDGMTPTL AA+ GNLEAL ++  RG
Sbjct:     7 QAASDSYLELLKEATKRDLNLSDEDGMTPTLLAAYHGNLEALEIICSRG 55

GO:0005886 "plasma membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q80T11	USH1G_MOUSE	No assigned EC number	0.6938	0.6533	0.1062	yes	N/A
Q495M9	USH1G_HUMAN	No assigned EC number	0.6938	0.6533	0.1062	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	75
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	5e-05
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-04
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	0.002
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	0.002
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	0.002

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 39.3 bits (92), Expect = 2e-05
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 2/50 (4%)

Query: 28 AAQDGMLDILREATKRDC--NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          AA +G L++++   +     NAKD DG TP   AA  G+LE ++LL+ +G
Sbjct: 14 AASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKG 63

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 38.0 bits (89), Expect = 3e-05
 Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 2/50 (4%)

Query: 28 AAQDGMLDILRE--ATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          AA++G L+I++       D NAKD+DG T    AA  GNLE ++LL+  G
Sbjct: 35 AARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHG 84

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 36.4 bits (85), Expect = 5e-05
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 27 RAAQDGMLDILRE--ATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLV 72
          +AA  G L++++       D N  DEDG T    AA  GNLE L+LL+
Sbjct: 7  KAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 37.4 bits (87), Expect = 1e-04
 Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 2/50 (4%)

Query: 28 AAQDGMLDILREATKRDC--NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          AA++G L+I++   ++    NA+D+DG TP   AA  GNL+ ++LL+  G
Sbjct: 47 AAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHG 96

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 33.9 bits (78), Expect = 0.002
 Identities = 16/30 (53%), Positives = 21/30 (70%)

Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          NA+DEDG TP   AA  G+LE ++LL+  G
Sbjct: 1  NARDEDGRTPLHLAASNGHLEVVKLLLENG 30

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 33.5 bits (77), Expect = 0.002
 Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 2/47 (4%)

Query: 28  AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLV 72
           AA++G LD+++   K   D NA+D+DG TP   AA  G+LE ++LL+
Sbjct: 80  AARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 33.0 bits (76), Expect = 0.002
 Identities = 15/48 (31%), Positives = 27/48 (56%)

Query: 28 AAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          AA++G L++++   ++  +    D  T    AA  GNLE ++LL+  G
Sbjct: 4  AAKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHG 51

Length = 91

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	75
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-04
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		3e-04
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		3e-04
2xee_A	157	Structural Determinants For Improved Thermal Stabil		3e-04
2xen_A	91	Structural Determinants For Improved Thermal Stabil		3e-04
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		6e-04
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-04
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		7e-04
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		8e-04

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          AA++G  +I++    +  D NAKD DG TP  +AA +G+ E ++LL+ +G
Sbjct: 44 AAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKG 93

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 22 LLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          LL   RA QD  + IL  A   D NAKD+DG TP   AA +G+LE + +L+  G
Sbjct: 18 LLEAARAGQDDEVRILM-ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 70

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 22 LLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          LL   RA QD  + IL  A   D NAKD+DG TP   AA +G+LE + +L+  G
Sbjct: 6  LLEAARAGQDDEVRILM-ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 58

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 22 LLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          LL   RA QD  + IL  A   D NAKD+DG TP   AA +G+LE + +L+  G
Sbjct: 6  LLEAARAGQDDEVRILM-ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 58

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 22 LLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          LL   RA QD  + IL  A   D NAKD+DG TP   AA +G+LE + +L+  G
Sbjct: 6  LLEAARAGQDDEVRILM-ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 58

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 22 LLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          LL   RA QD  + IL  A   D NAKDE G+TP   A   G+LE + +L+  G
Sbjct: 18 LLEAARAGQDDEVRILM-ANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNG 70

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 4   LVLLVTNRAYGPQANSSYLLLP-PRAAQDGMLDILREATKR--DCNAKDEDGMTPTLWAA 60
           +V L+ ++   P A  S    P   AA++G  +I++    +  D NAKD DG TP  +AA
Sbjct: 52  IVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAA 111
Query: 61  FQGNLEALRLLVGRG 75
             G+ E ++LL+ +G
Sbjct: 112 ENGHKEIVKLLLSKG 126

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 13  YGPQANS--SYLLLPPR-AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEA 67
           YG   N+  +Y   P   AA +G L+I+    K   D NAKD +G TP   AA+ G+LE 
Sbjct: 69  YGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEI 128
Query: 68  LRLLVGRG 75
           + +L+  G
Sbjct: 129 VEVLLKYG 136

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 22 LLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          LL   RA QD  + IL  A   D NA+D+ G TP   AA +G+LE + +L+  G
Sbjct: 18 LLEAARAGQDDEVRILM-ANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHG 70

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	75
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-07
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-07
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-04
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	8e-07
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-04
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-07
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-05
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-04
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-04
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-06
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	9e-06
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-06
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	9e-06
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-05
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-06
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-06
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-06
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-05
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-04
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-04
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-06
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-06
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	9e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-04
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-06
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	8e-06
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-04
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-06
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-04
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-04
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-04
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-06
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-04
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-04
2etb_A	256	Transient receptor potential cation channel subfam	1e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-04
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-05
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-05
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-05
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	7e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-04
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-04
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-04
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-04
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-04
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-04
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	8e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	9e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	9e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-04
2rfa_A	232	Transient receptor potential cation channel subfa	1e-04
2rfa_A	232	Transient receptor potential cation channel subfa	7e-04
2pnn_A	273	Transient receptor potential cation channel subfa	1e-04
2pnn_A	273	Transient receptor potential cation channel subfa	2e-04

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 42.3 bits (101), Expect = 4e-07
 Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 2/50 (4%)

Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          AA++G L++++   +   D NAKD++G TP   AA  G+LE ++LL+  G
Sbjct: 9  AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 40.0 bits (95), Expect = 2e-06
 Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 8/53 (15%)

Query: 28 AAQDGMLDILR-----EATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          AA++G L++++      A   D NAKD++G TP   AA  G+LE ++LL+  G
Sbjct: 42 AARNGHLEVVKLLLEAGA---DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 42.8 bits (102), Expect = 4e-07
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          A ++G LD +++   +  D N   E G  P  +AA  G LE L  L+ +G
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG 63

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 41.6 bits (99), Expect = 1e-06
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 8/53 (15%)

Query: 28 AAQDGMLDILRE-----ATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          AA  G L+IL       A   D NA D+  +TP L A ++G++  ++LL+ +G
Sbjct: 47 AADCGQLEILEFLLLKGA---DINAPDKHHITPLLSAVYEGHVSCVKLLLSKG 96

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 44.0 bits (105), Expect = 5e-07
 Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          A Q G+ +  RE  +   D    D++ +T   WAA    ++ ++  + +G
Sbjct: 16 ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKG 65

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 40.5 bits (96), Expect = 7e-06
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 8/53 (15%)

Query: 28  AAQDGMLD-----ILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           A + G L      +   A   D +  D +G +    AA  G+   +  L+ +G
Sbjct: 83  ATRQGHLSMVVQLMKYGA---DPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG 132

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 39.7 bits (94), Expect = 1e-05
 Identities = 8/30 (26%), Positives = 10/30 (33%)

Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
             D+      + A   G  E  R LV  G
Sbjct: 3  THIDDYSTWDIVKATQYGIYERCRELVEAG 32

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 39.3 bits (93), Expect = 2e-05
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 9/54 (16%)

Query: 28  AAQDGMLDILRE-----ATKRDCNAKDEDGMTPTLWAAFQGN-LEALRLLVGRG 75
           AAQ G   I+           D +  D++GMTP +WAA++ + ++  RLL+   
Sbjct: 116 AAQFGHTSIVAYLIAKGQ---DVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFN 166

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 37.8 bits (89), Expect = 6e-05
 Identities = 5/32 (15%), Positives = 13/32 (40%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           + +A++  G +    A  + N+  +  L    
Sbjct: 202 NVDAQNIKGESALDLAKQRKNVWMINHLQEAR 233

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 36.3 bits (85), Expect = 2e-04
 Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)

Query: 44 DCNAKDED-GMTPTLWAAFQGNLEALRLLVGRG 75
            +    D   TP  WA  QG+L  +  L+  G
Sbjct: 67 IVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYG 99

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 35.9 bits (84), Expect = 4e-04
 Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)

Query: 46  NAKDE-DGMTPTLWAAFQGNLEALRLLVGRG 75
           N  D+    T   WA   GN   + LL+  G
Sbjct: 170 NLGDKYHKNTALHWAVLAGNTTVISLLLEAG 200

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 42.5 bits (101), Expect = 8e-07
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 8/53 (15%)

Query: 28  AAQDGMLDILR-----EATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           AA++G LD L       A     + +D  G  P   A   G+ +  R L    
Sbjct: 85  AAREGFLDTLVVLHRAGA---RLDVRDAWGRLPVDLAEELGHRDVARYLRAAA 134

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 38.6 bits (91), Expect = 2e-05
 Identities = 8/34 (23%), Positives = 14/34 (41%)

Query: 42 KRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          +    +  E        AA +G +E +R L+  G
Sbjct: 2  EPAAGSSMEPSADWLATAAARGRVEEVRALLEAG 35

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 38.6 bits (91), Expect = 2e-05
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          AA  G ++ +R   +   + NA +  G  P       G+     LL+  G
Sbjct: 19 AAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHG 67

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 35.9 bits (84), Expect = 3e-04
 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 44  DCNAKDEDGMTPTL-WAAFQGNLEALRLLVGRG 75
           + N  D   +T  +  AA +G L+ L +L   G
Sbjct: 69  EPNCADPATLTRPVHDAAREGFLDTLVVLHRAG 101

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 42.8 bits (102), Expect = 9e-07
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 28 AAQDGMLDILR---EATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
            ++G    +R   + T+ D N  D+ G +P  WA  +G    + +L+ RG
Sbjct: 12 QCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG 62

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 39.7 bits (94), Expect = 1e-05
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 8/53 (15%)

Query: 28  AAQDGMLDILRE-----ATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           AA  G  DI+++     A   D NA +E G  P  +A F G  +    LV  G
Sbjct: 79  AASHGHRDIVQKLLQYKA---DINAVNEHGNVPLHYACFWGQDQVAEDLVANG 128

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 36.6 bits (86), Expect = 2e-04
 Identities = 7/30 (23%), Positives = 13/30 (43%)

Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          N  +    TP   AA  G+ + ++ L+   
Sbjct: 66 NVMNRGDDTPLHLAASHGHRDIVQKLLQYK 95

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 35.9 bits (84), Expect = 2e-04
 Identities = 4/32 (12%), Positives = 7/32 (21%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
             +  ++ G  P   A               G
Sbjct: 130 LVSICNKYGEMPVDKAKAPLRELLRERAEKMG 161

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 34.7 bits (81), Expect = 7e-04
 Identities = 6/27 (22%), Positives = 10/27 (37%)

Query: 49 DEDGMTPTLWAAFQGNLEALRLLVGRG 75
            + M        +GN  A+RL +   
Sbjct: 2  SPEFMDDIFTQCREGNAVAVRLWLDNT 28

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 42.0 bits (100), Expect = 1e-06
 Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 8/53 (15%)

Query: 28  AAQDGMLDILR-----EATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           AA++G LD L       A     +  D  G  P   A  QG+ +  R L    
Sbjct: 85  AAREGFLDTLVVLHRAGA---RLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT 134

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 39.3 bits (93), Expect = 9e-06
 Identities = 7/32 (21%), Positives = 12/32 (37%)

Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
            +            AA +G +E +R L+  G
Sbjct: 4  GIHMLGGSSDAGLATAAARGQVETVRQLLEAG 35

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 38.2 bits (90), Expect = 3e-05
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          AA  G ++ +R+  +   D NA +  G  P +     G+ +   LL+  G
Sbjct: 19 AAARGQVETVRQLLEAGADPNALNRFGRRP-IQVMMMGSAQVAELLLLHG 67

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 35.9 bits (84), Expect = 2e-04
 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 44  DCNAKDEDGMTPTL-WAAFQGNLEALRLLVGRG 75
           + N  D   +T  +  AA +G L+ L +L   G
Sbjct: 69  EPNCADPATLTRPVHDAAREGFLDTLVVLHRAG 101

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 42.4 bits (101), Expect = 1e-06
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           A  G +  L    ++    N  DE+G TP +WAA  G +  +  L+  G
Sbjct: 10 LAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNG 59

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 39.7 bits (94), Expect = 9e-06
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 28  AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           A   G  DI++       D N  D +G TP L+A    +++ +++L+  G
Sbjct: 76  ACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG 125

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 38.9 bits (92), Expect = 2e-05
 Identities = 4/32 (12%), Positives = 9/32 (28%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           D   + + G      A   G     +++    
Sbjct: 127 DPTIETDSGYNSMDLAVALGYRSVQQVIESHL 158

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 38.9 bits (92), Expect = 2e-05
 Identities = 8/50 (16%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          AA  G + ++    +   D     +   +    A  +G  + +++L+  G
Sbjct: 43 AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCG 92

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 42.4 bits (101), Expect = 1e-06
 Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 2/50 (4%)

Query: 28  AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           A +   +  +     R  D   + + G TP   A   G  +  +++    
Sbjct: 109 AVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI 158

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 42.0 bits (100), Expect = 2e-06
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 27 RAAQDGMLDILREATKRDC---NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          + A  G LD L+E  ++     N  DE G TP +WA+  G +E +R L+  G
Sbjct: 8  QLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG 59

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 41.2 bits (98), Expect = 3e-06
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 28  AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           A+  G  DI+    +R  D N  D +G TP L+A    +++ +  L+ RG
Sbjct: 76  ASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARG 125

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 40.9 bits (97), Expect = 4e-06
 Identities = 9/50 (18%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          A+  G ++ +R   +   D +   ++  +    A+  G  + + LL+ R 
Sbjct: 43 ASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERD 92

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 41.8 bits (99), Expect = 2e-06
 Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 3/48 (6%)

Query: 28 AAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
              G   ++          + E    P   AA +GNL  LR  +   
Sbjct: 52 GTSKGRTGLIPSN---YVAEQAESIDNPLHEAAKRGNLSWLRECLDNR 96

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 38.0 bits (89), Expect = 7e-05
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 28  AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLV 72
           AA+ G L  LRE        N  D+ G T   WA   G+ + + +L 
Sbjct: 80  AAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLF 126

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 37.6 bits (88), Expect = 7e-05
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 28  AAQDGMLDI---LREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           A   G  DI   L      + N +++ G T    AA++G  + ++LL+ +G
Sbjct: 113 ACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKG 163

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 37.6 bits (88), Expect = 8e-05
 Identities = 3/32 (9%), Positives = 8/32 (25%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
             + ++ +       A        L+   G  
Sbjct: 165 RTDLRNIEKKLAFDMATNAACASLLKKKQGTD 196

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 41.2 bits (98), Expect = 2e-06
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 8/53 (15%)

Query: 28 AAQDGMLD-----ILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          AA++G L+     +   A   D NAKD++G TP   AA  G+LE ++LL+  G
Sbjct: 9  AARNGHLEVVKLLLEAGA---DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 40.8 bits (97), Expect = 3e-06
 Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 8/53 (15%)

Query: 28  AAQDGMLDILR-----EATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           AA++G L++++      A   D NAKD++G TP   AA  G+LE ++LL+  G
Sbjct: 75  AARNGHLEVVKLLLEAGA---DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 40.4 bits (96), Expect = 3e-06
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 8/53 (15%)

Query: 28 AAQDGMLD-----ILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          AA++G L+     +   A   D NAKD++G TP   AA  G+LE ++LL+  G
Sbjct: 42 AARNGHLEVVKLLLEAGA---DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 42.2 bits (100), Expect = 2e-06
 Identities = 9/39 (23%), Positives = 18/39 (46%)

Query: 37 LREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          + +  K +    D++ M     AA +G  + +R L+  G
Sbjct: 5  MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETG 43

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 40.2 bits (95), Expect = 1e-05
 Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 6/50 (12%)

Query: 28  AAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGN--LEALRLLVGRG 75
             +    ++     +   + K   G T   W    G   LE +++LV  G
Sbjct: 118 LNECDEREV----NEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLG 163

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 39.9 bits (94), Expect = 1e-05
 Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 8/53 (15%)

Query: 28 AAQDGMLD-----ILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          AA+ G  D     I           ++  G T    A   G ++  + L   G
Sbjct: 27 AARKGQTDEVRRLIETGV---SPTIQNRFGCTALHLACKFGCVDTAKYLASVG 76

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 38.3 bits (90), Expect = 4e-05
 Identities = 2/32 (6%), Positives = 7/32 (21%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           +       G    +    +      R+ +   
Sbjct: 315 EVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPS 346

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 38.3 bits (90), Expect = 4e-05
 Identities = 6/55 (10%), Positives = 15/55 (27%), Gaps = 7/55 (12%)

Query: 28  AAQDGMLDI----LREATKR---DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           A +    +     +     +     +  ++ G +   WA      +     V  G
Sbjct: 180 AMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMG 234

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 38.3 bits (90), Expect = 5e-05
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
              AKD+   TP + A    N EAL L++   
Sbjct: 165 SPTAKDKADETPLMRAMEFRNREALDLMMDTV 196

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 37.2 bits (87), Expect = 1e-04
 Identities = 5/32 (15%), Positives = 12/32 (37%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           D N +D +   P   +     +   + L+ + 
Sbjct: 236 DVNMEDNEHTVPLYLSVRAAMVLLTKELLQKT 267

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 41.7 bits (99), Expect = 2e-06
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          D N ++    +P L+A  QG  E L  ++   
Sbjct: 64 DINLQNSISDSPYLYAGAQGRTEILAYMLKHA 95

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 41.3 bits (98), Expect = 3e-06
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
            +  D +G TP   A    ++E  + L+ RG
Sbjct: 31 QVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 39.7 bits (94), Expect = 1e-05
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 28  AAQDGMLDILR---EATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           A   G  +IL    +    D N  +  G    + AA +G+++ ++LL+  G
Sbjct: 79  AGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG 129

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 37.4 bits (88), Expect = 7e-05
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLV 72
           D + KD  G T   +A  +G  E  ++L 
Sbjct: 170 DQSIKDNSGRTAMDYANQKGYTEISKILA 198

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 41.7 bits (99), Expect = 2e-06
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 28 AAQDGMLDILREATK-RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          AA+      L +  + RD +A DE+G T  L+ A  G+ + +RLL   G
Sbjct: 51 AARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAG 99

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 36.3 bits (85), Expect = 2e-04
 Identities = 7/32 (21%), Positives = 10/32 (31%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           D   +DE G+T    A            +  G
Sbjct: 135 DIEVEDERGLTALELAREILKTTPKGNPMQFG 166

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 34.8 bits (81), Expect = 8e-04
 Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)

Query: 44  DCNAKD-EDGMTPTLWAAFQGNLEALRLLVGRG 75
           D + +D   G+T    AA     E +  LV  G
Sbjct: 101 DLDHRDMRGGLTALHMAAGYVRPEVVEALVELG 133

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 40.3 bits (95), Expect = 3e-06
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          AA+ G  D +R       D  AKD++G TP   AA  G+LE ++LL+  G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG 80

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 41.5 bits (98), Expect = 3e-06
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          AA  G L+++++A K   D +  +E+G+T    A    N   +  L+  G
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAG 77

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 40.3 bits (95), Expect = 9e-06
 Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 8/53 (15%)

Query: 28  AAQDGMLDILR-----EATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           A       I+       A   + N+ D  G TP   AA   +      LV  G
Sbjct: 61  AICGANYSIVDFLITAGA---NVNSPDSHGWTPLHCAASCNDTVICMALVQHG 110

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 41.2 bits (98), Expect = 3e-06
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 28  AAQDGMLDI---LREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           AA+ G  ++   L    + D N +D+ G TP +WA    +++ ++LL+ +G
Sbjct: 84  AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG 134

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 40.9 bits (97), Expect = 5e-06
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          + +   ED  TP + AA   +LEA++ L+  G
Sbjct: 36 NIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG 67

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 40.5 bits (96), Expect = 8e-06
 Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 8/53 (15%)

Query: 28  AAQDGMLD-----ILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           AA++   D     + R++   D   K+++G TP   A+    + +   +    
Sbjct: 184 AARENRYDCVVLFLSRDS---DVTLKNKEGETPLQCASLNSQVWSALQMSKAL 233

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 39.7 bits (94), Expect = 1e-05
 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 8/53 (15%)

Query: 28  AAQDGMLD-----ILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           A +   +D     + + +   D N +D +      WAAF G ++   +L+   
Sbjct: 118 ATEYKHVDLVKLLLSKGS---DINIRDNEENICLHWAAFSGCVDIAEILLAAK 167

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 39.7 bits (94), Expect = 1e-05
 Identities = 7/32 (21%), Positives = 16/32 (50%)

Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          +   + ++  +P   AA  G+++   +LV  G
Sbjct: 3  NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAG 34

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 39.3 bits (93), Expect = 2e-05
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
             + KD +G T    AA +G+ E ++ L+  G
Sbjct: 69  LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG 100

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 39.3 bits (93), Expect = 2e-05
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 8/53 (15%)

Query: 28  AAQDGMLD-----ILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           AA  G +D     +  +    D +A +  G +P   AA +   + + L + R 
Sbjct: 151 AAFSGCVDIAEILLAAKC---DLHAVNIHGDSPLHIAARENRYDCVVLFLSRD 200

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 41.3 bits (98), Expect = 4e-06
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 28  AAQDGMLDILR------EATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           A +      LR           D  A++ DG+T    A      E ++LL+ RG
Sbjct: 86  ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERG 139

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 39.4 bits (93), Expect = 2e-05
 Identities = 8/32 (25%), Positives = 12/32 (37%)

Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          + +  +    TP   A        +RLLV  G
Sbjct: 38 ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 39.0 bits (92), Expect = 3e-05
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           + NA+   G +    A+ +G L  +R LV  G
Sbjct: 175 NVNAQMYSGSSALHSASGRGLLPLVRTLVRSG 206

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 38.2 bits (90), Expect = 5e-05
 Identities = 8/32 (25%), Positives = 10/32 (31%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
              A D  G T    A    +   LR L+   
Sbjct: 71  SPMALDRHGQTAAHLACEHRSPTCLRALLDSA 102

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 38.2 bits (90), Expect = 5e-05
 Identities = 8/32 (25%), Positives = 14/32 (43%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           D + K+    TP + A  +  ++ LR    R 
Sbjct: 208 DSSLKNCHNDTPLMVARSRRVIDILRGKATRP 239

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 36.7 bits (86), Expect = 2e-04
 Identities = 14/27 (51%), Positives = 15/27 (55%)

Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLV 72
             DEDG TP   A  QGNL A+  LV
Sbjct: 3  TRADEDGDTPLHIAVVQGNLPAVHRLV 29

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 41.3 bits (98), Expect = 4e-06
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 28  AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           AA+   +++ R   +     NA+   G+TP   AA +G+ E + LL+ + 
Sbjct: 219 AAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ 268

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 40.9 bits (97), Expect = 5e-06
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 28  AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           AA+ G + +     +R    NA  ++G+TP   A    NL+ ++LL+ RG
Sbjct: 153 AAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRG 202

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 40.9 bits (97), Expect = 5e-06
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 8/53 (15%)

Query: 28  AAQDGMLDILR-----EATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           AA++G ++ +      EA         + G TP   AA  G +    LL+ R 
Sbjct: 120 AAREGHVETVLALLEKEA---SQACMTKKGFTPLHVAAKYGKVRVAELLLERD 169

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 40.9 bits (97), Expect = 6e-06
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 28  AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           AA+ G  ++ +   +     NAK +D  TP   AA  G+   ++LL+   
Sbjct: 54  AARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENN 103

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 40.6 bits (96), Expect = 8e-06
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           D NAK + G +P   AA QG+ + + LL+  G
Sbjct: 336 DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 367

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 40.2 bits (95), Expect = 1e-05
 Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 28  AAQDGMLDILRE--ATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           AAQ+G  +++    + + + N  ++ G+TP    A +G++    +L+  G
Sbjct: 252 AAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG 301

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 40.2 bits (95), Expect = 1e-05
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
              E G+TP   A+F G+L  ++ L+ RG
Sbjct: 8  GGGGESGLTPLHVASFMGHLPIVKNLLQRG 37

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 39.8 bits (94), Expect = 1e-05
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 28  AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           A     LDI++    R    ++   +G TP   AA Q  +E  R L+  G
Sbjct: 186 AVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG 235

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 39.8 bits (94), Expect = 1e-05
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          A+  G L I++   +R    N  +    TP   AA  G+ E  + L+   
Sbjct: 21 ASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNK 70

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 39.8 bits (94), Expect = 2e-05
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 46  NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           N     G TP   AA +G++E +  L+ + 
Sbjct: 107 NLATTAGHTPLHIAAREGHVETVLALLEKE 136

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 39.0 bits (92), Expect = 3e-05
 Identities = 8/32 (25%), Positives = 15/32 (46%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
             +A    G TP   A+  GN++ ++ L+   
Sbjct: 303 MVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ 334

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 35.9 bits (84), Expect = 3e-04
 Identities = 14/50 (28%), Positives = 17/50 (34%), Gaps = 2/50 (4%)

Query: 28  AAQDGMLDILRE--ATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           AAQ G  DI+          N    DG TP   A   G +    +L    
Sbjct: 351 AAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVT 400

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 40.1 bits (95), Expect = 5e-06
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 8/53 (15%)

Query: 28 AAQDGMLD-----ILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          AA++G  +     + + A   D NA+ +DG TP   A   G+ E ++LL  +G
Sbjct: 49 AAKNGHAEIVKLLLAKGA---DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKG 98

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 39.3 bits (93), Expect = 8e-06
 Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 2/50 (4%)

Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          AA++G  + +++   +  D NA+ +DG TP   AA  G+ E ++LL+ +G
Sbjct: 16 AAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 35.0 bits (82), Expect = 4e-04
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
              +DG TP   AA  G+ E ++ L+ +G
Sbjct: 3  MWGSKDGNTPLHNAAKNGHAEEVKKLLSKG 32

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 40.6 bits (96), Expect = 7e-06
 Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 8/56 (14%)

Query: 28  AAQDGMLDILR--------EATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           A + G L  +                 A + +G T    A+  G L  + LLV  G
Sbjct: 85  ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG 140

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 35.6 bits (83), Expect = 4e-04
 Identities = 10/32 (31%), Positives = 14/32 (43%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           D   +D  G TP   A  QG L ++ +L    
Sbjct: 70  DPELRDFRGNTPLHLACEQGCLASVGVLTQSC 101

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 35.6 bits (83), Expect = 5e-04
 Identities = 5/32 (15%), Positives = 9/32 (28%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           D N     G +P      + +    + L    
Sbjct: 176 DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT 207

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 35.2 bits (82), Expect = 6e-04
 Identities = 8/32 (25%), Positives = 11/32 (34%)

Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
            N ++    TP   A      E    L+G G
Sbjct: 37 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 68

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 40.7 bits (96), Expect = 7e-06
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 28  AAQDGMLDILREATK-RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           AA+      L +  + RD +A DE+G T  L+ A  G+ + +RLL   G
Sbjct: 52  AARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAG 100

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 36.8 bits (86), Expect = 2e-04
 Identities = 7/32 (21%), Positives = 10/32 (31%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           D   +DE G+T    A            +  G
Sbjct: 136 DIEVEDERGLTALELAREILKTTPKGNPMQFG 167

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 40.6 bits (96), Expect = 7e-06
 Identities = 10/53 (18%), Positives = 15/53 (28%), Gaps = 5/53 (9%)

Query: 28 AAQDGMLDILRE-----ATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          A        L       A     + +++ G T    AA  G    +  L   G
Sbjct: 16 AVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 39.8 bits (94), Expect = 1e-05
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
              A++ DG TP   A    + E +RLL   G
Sbjct: 150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG 181

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 37.9 bits (89), Expect = 6e-05
 Identities = 8/30 (26%), Positives = 10/30 (33%)

Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
              EDG T    A    +   L  L+G  
Sbjct: 3  GYVTEDGDTALHLAVIHQHEPFLDFLLGFS 32

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 37.1 bits (87), Expect = 1e-04
 Identities = 4/32 (12%), Positives = 7/32 (21%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
                +  G T    A          +L+   
Sbjct: 70  GVLVAERGGHTALHLACRVRAHTCACVLLQPR 101

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 36.8 bits (86), Expect = 1e-04
 Identities = 10/30 (33%), Positives = 12/30 (40%)

Query: 46  NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
            A+   G TP   A  + N    RLL   G
Sbjct: 219 TARMYGGRTPLGSALLRPNPILARLLRAHG 248

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 40.1 bits (95), Expect = 9e-06
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 46  NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           N  D  G T  + AA  G ++AL+ L  RG
Sbjct: 99  NECDFYGFTAFMEAAVYGKVKALKFLYKRG 128

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 39.8 bits (94), Expect = 1e-05
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          D   + ++G TP L AA  G+++ L+L + +G
Sbjct: 64 DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKG 95

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 39.0 bits (92), Expect = 2e-05
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 3/51 (5%)

Query: 28  AAQDGMLDI---LREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           A +   L +   L E    + N  D DG T  L A      +   LL  RG
Sbjct: 226 AVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG 276

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 37.5 bits (88), Expect = 1e-04
 Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 6/51 (11%)

Query: 28  AAQDGMLDILREATKR------DCNAKDEDGMTPTLWAAFQGNLEALRLLV 72
           A        +   T        D N + E G TP + A  + +L  ++ L+
Sbjct: 189 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 239

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 35.1 bits (82), Expect = 7e-04
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 9/54 (16%)

Query: 28 AAQDGMLDILRE-----ATKRDCNAKDED-GMTPTLWAAFQGNLEALRLLVGRG 75
          A Q+  +D++++     A   + N ++E+ G TP   A      + + LL+  G
Sbjct: 12 AVQNEDVDLVQQLLEGGA---NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 40.2 bits (95), Expect = 9e-06
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          +C+A D    TP   AA    +  ++LL+  G
Sbjct: 50 NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG 81

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 38.2 bits (90), Expect = 4e-05
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 28  AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           AA    + I++   +   D +AKD+ G+ P   A   G+ E   LL+  G
Sbjct: 65  AAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHG 114

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 38.2 bits (90), Expect = 5e-05
 Identities = 13/32 (40%), Positives = 16/32 (50%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
             NA D  G T    AA  G+L+  RLL+  G
Sbjct: 272 KMNALDSLGQTALHRAALAGHLQTCRLLLSYG 303

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 37.9 bits (89), Expect = 6e-05
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 46  NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           NA D    TP   AA +  +E   LL+  G
Sbjct: 118 NAMDLWQFTPLHEAASKNRVEVCSLLLSHG 147

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 37.1 bits (87), Expect = 1e-04
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           + N K++D MTP   AA + + + + +L   G
Sbjct: 239 NVNEKNKDFMTPLHVAAERAHNDVMEVLHKHG 270

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 40.1 bits (95), Expect = 1e-05
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 27  RAAQDGMLDI---LREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGR 74
           RAA  G L +   L    K   N +D+ G TP   A  +G+ +A  LLV +
Sbjct: 146 RAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 39.7 bits (94), Expect = 1e-05
 Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 4/52 (7%)

Query: 28  AAQDGMLDI----LREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           A   G L++         K D N     G+T    A  +   E  + L+  G
Sbjct: 79  ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENG 130

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 39.7 bits (94), Expect = 1e-05
 Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 9/54 (16%)

Query: 28 AAQDGMLDILRE------ATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          A  +     ++E      +       KD+DG  P  W+      E    L+ + 
Sbjct: 9  ACMENEFFKVQELLHSKPS---LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 59

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 38.2 bits (90), Expect = 5e-05
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
               KD+    P   AA  G+L+ + LL G G
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELLCGLG 163

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 40.2 bits (95), Expect = 1e-05
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          A   G  + +    +R  D N  + DG+T    A    N++ ++ LV  G
Sbjct: 47 ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENG 96

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 38.6 bits (91), Expect = 3e-05
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 28  AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           A  D  +D+++   +   + N  D +G  P   AA  G L+    L+ +G
Sbjct: 80  ACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQG 129

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 38.6 bits (91), Expect = 3e-05
 Identities = 16/32 (50%), Positives = 17/32 (53%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           D N KD DG TP   AA  G  EA R+LV   
Sbjct: 224 DVNIKDYDGWTPLHAAAHWGKEEACRILVENL 255

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 38.2 bits (90), Expect = 5e-05
 Identities = 9/32 (28%), Positives = 14/32 (43%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           +     + G T    AA +G  E L+LL+   
Sbjct: 191 NDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR 222

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 36.3 bits (85), Expect = 2e-04
 Identities = 9/32 (28%), Positives = 13/32 (40%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
              A + +G TP   A  +   E L+  V R 
Sbjct: 131 HVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ 162

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 34.8 bits (81), Expect = 8e-04
 Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 3/50 (6%)

Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
              G    L     +      K +DG    L A   G+ E +  L+ RG
Sbjct: 15 KRWIGSETDLEPPVVKRKKTKVKFDDGAVF-LAACSSGDTEEVLRLLERG 63

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 39.9 bits (93), Expect = 1e-05
 Identities = 9/32 (28%), Positives = 13/32 (40%)

Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
               D+D  T   WA   G+ E +  L+  G
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFLLQLG 63

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 36.4 bits (84), Expect = 2e-04
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          N KD+ G +P   AA  G  E ++ L+ +G
Sbjct: 67 NDKDDAGWSPLHIAASAGXDEIVKALLVKG 96

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 40.2 bits (94), Expect = 1e-05
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 28  AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
              DG+L +              +  G+TP   AA +G +E  R ++ R 
Sbjct: 195 HMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQRE 244

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 39.7 bits (94), Expect = 1e-05
 Identities = 9/32 (28%), Positives = 13/32 (40%)

Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
              KD +G T  +WA     L     L+ +G
Sbjct: 60 KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKG 91

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 39.3 bits (93), Expect = 1e-05
 Identities = 9/30 (30%), Positives = 12/30 (40%)

Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          N +D    TP + A   G   A+  LV   
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENF 58

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 37.8 bits (89), Expect = 6e-05
 Identities = 9/32 (28%), Positives = 18/32 (56%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           + N ++ +G TP + A+  G  E ++ L+  G
Sbjct: 126 NVNDRNLEGETPLIVASKYGRSEIVKKLLELG 157

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 37.8 bits (89), Expect = 7e-05
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           + N KD  G TP +W+   G  E    L+  G
Sbjct: 93  NVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHG 124

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 35.4 bits (83), Expect = 4e-04
 Identities = 8/29 (27%), Positives = 14/29 (48%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLV 72
           D +A+D  G+T    A   G  E +++  
Sbjct: 159 DISARDLTGLTAEASARIFGRQEVIKIFT 187

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 39.9 bits (94), Expect = 1e-05
 Identities = 11/50 (22%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          ++ +G  D+++       D +  +++G+T    A   G+ E ++ LV  G
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFG 93

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 38.7 bits (91), Expect = 3e-05
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           + NA D DG TP   AA   N++  + LV  G
Sbjct: 95  NVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 35.3 bits (82), Expect = 5e-04
 Identities = 4/49 (8%), Positives = 16/49 (32%), Gaps = 1/49 (2%)

Query: 28 AAQDGMLDILREATKRDCNAK-DEDGMTPTLWAAFQGNLEALRLLVGRG 75
            +  +     E        K +   +   L ++ +G  + ++ ++   
Sbjct: 12 GKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEV 60

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 39.3 bits (93), Expect = 1e-05
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 8/53 (15%)

Query: 28  AAQDGMLD-----ILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           AA+ G LD     +  +A   D N +D +G  P   AA +G+L  +  LV   
Sbjct: 77  AARAGFLDTLQTLLEFQA---DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 38.1 bits (90), Expect = 4e-05
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 28  AAQDGMLDI---LREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           AA++G L +   L + T  +   ++  G T    A   G  E + L+   G
Sbjct: 110 AAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 38.1 bits (90), Expect = 4e-05
 Identities = 9/32 (28%), Positives = 14/32 (43%)

Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          + + KD  G      AA  G L+ L+ L+   
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQ 93

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 37.4 bits (88), Expect = 7e-05
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          + NA++  G T  L     GN E  R L+ RG
Sbjct: 30 NVNAQNGFGRTA-LQVMKLGNPEIARRLLLRG 60

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 39.6 bits (93), Expect = 2e-05
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           + + +DEDG TP + AA +G +E +  L+ +G
Sbjct: 305 NKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG 336

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 38.8 bits (91), Expect = 3e-05
 Identities = 10/32 (31%), Positives = 13/32 (40%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           D NA D D  TP + A        +  L+  G
Sbjct: 158 DVNAMDCDENTPLMLAVLARRRRLVAYLMKAG 189

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 36.9 bits (86), Expect = 1e-04
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 8/56 (14%)

Query: 28  AAQDGMLDILR-----EATKRDCNAKDEDGMTPTLWAAFQGNLEAL---RLLVGRG 75
           AA +    ++         K D    D +GMT  +  A     + +   +LLV +G
Sbjct: 206 AAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKG 261

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 8/53 (15%)

Query: 28  AAQDGMLD-----ILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           AAQ+G ++     I + A      A D    T    A    +   + +     
Sbjct: 320 AAQEGRIEVVMYLIQQGA---SVEAVDATDHTARQLAQANNHHNIVDIFDRCR 369

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 36.1 bits (84), Expect = 3e-04
 Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 13/58 (22%)

Query: 28  AAQDGMLDILREA-------------TKRDCNAKDEDGMTPTLWAAFQGNLEALRLLV 72
            A +   D +  A                  +++   G T   +AA   N+  ++ LV
Sbjct: 242 VAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLV 299

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 36.1 bits (84), Expect = 3e-04
 Identities = 3/29 (10%), Positives = 10/29 (34%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLV 72
           D    ++   +    AA   +   +  ++
Sbjct: 191 DPTIYNKSERSALHQAAANRDFGMMVYML 219

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 34.9 bits (81), Expect = 6e-04
 Identities = 8/49 (16%), Positives = 11/49 (22%), Gaps = 7/49 (14%)

Query: 27 RAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           A+ DG +   R       N      + P       GN           
Sbjct: 43 EASYDGYIKRQR-------NELQHYSLYPNPQGYGNGNDFLGDFNHTNL 84

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 34.9 bits (81), Expect = 9e-04
 Identities = 2/32 (6%), Positives = 6/32 (18%), Gaps = 1/32 (3%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
                + +     L     G+      +    
Sbjct: 86  IPTEPEPESPIK-LHTEAAGSYAITEPITRES 116

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 39.4 bits (93), Expect = 2e-05
 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 8/53 (15%)

Query: 28  AAQDGMLD-----ILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           AA           +       D +  D+ G T   +A   GN++ ++L V + 
Sbjct: 69  AATLEDTKIVKILLFSGL---DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKN 118

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 39.0 bits (92), Expect = 2e-05
 Identities = 7/32 (21%), Positives = 13/32 (40%)

Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          D    D  G + + +A    N+  +  L+  G
Sbjct: 23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAG 54

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 39.0 bits (92), Expect = 3e-05
 Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 9/54 (16%)

Query: 28  AAQDGMLD-----ILREATKRDCNAKDEDGMTPTL-WAAFQGNLEALRLLVGRG 75
             ++G +D     +         N  +     P +  A    ++E L+ L    
Sbjct: 168 TIKNGHVDMMILLLDYMT---STNTNNSLLFIPDIKLAIDNKDIEMLQALFKYD 218

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 37.1 bits (87), Expect = 1e-04
 Identities = 5/49 (10%), Positives = 16/49 (32%), Gaps = 1/49 (2%)

Query: 28  AAQDGMLDILRE-ATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           A     + I+    ++          ++        G+++ + LL+   
Sbjct: 136 AVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYM 184

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 36.0 bits (84), Expect = 3e-04
 Identities = 7/48 (14%), Positives = 17/48 (35%)

Query: 28 AAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          A  D  + ++             +   P   AA   + + +++L+  G
Sbjct: 38 AIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSG 85

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 39.4 bits (93), Expect = 2e-05
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 28  AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           AA  G    LR    +    N    D ++P   A   G+L  +++L+  G
Sbjct: 66  AAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG 115

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 37.9 bits (89), Expect = 7e-05
 Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 2/50 (4%)

Query: 28  AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           AA+ G ++ +        + + K     TP   A        ++ L+  G
Sbjct: 164 AARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 213

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 37.5 bits (88), Expect = 1e-04
 Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 5/48 (10%)

Query: 28 AAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
              G+  +                 +P   AA  G+  +LR L+ +G
Sbjct: 40 RDFPGIRLL-----SNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQG 82

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 37.1 bits (87), Expect = 1e-04
 Identities = 9/30 (30%), Positives = 13/30 (43%)

Query: 46  NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           N    D  TP   A   G+ + + LL+  G
Sbjct: 119 NGVTADWHTPLFNACVSGSWDCVNLLLQHG 148

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 39.4 bits (93), Expect = 2e-05
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           D NA D+ G +   WAA   N++A  +L+  G
Sbjct: 149 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 180

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 37.8 bits (89), Expect = 6e-05
 Identities = 8/30 (26%), Positives = 11/30 (36%)

Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          N  D  G T    AA     +A + L+   
Sbjct: 51 NQTDRTGETALHLAARYSRSDAAKRLLEAS 80

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 37.1 bits (87), Expect = 1e-04
 Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 3/51 (5%)

Query: 28  AAQDGMLDI---LREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           A       +   L      D +A+  DG TP + AA       L  L+   
Sbjct: 97  AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH 147

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 36.3 bits (85), Expect = 2e-04
 Identities = 7/32 (21%), Positives = 16/32 (50%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           + + ++    TP   AA +G+ E  ++L+   
Sbjct: 182 NKDMQNNREETPLFLAAREGSYETAKVLLDHF 213

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 34.8 bits (81), Expect = 7e-04
 Identities = 6/30 (20%), Positives = 11/30 (36%)

Query: 46  NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           +  D     P   A  + + + +RLL    
Sbjct: 217 DITDHMDRLPRDIAQERMHHDIVRLLDLEH 246

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 34.8 bits (81), Expect = 8e-04
 Identities = 8/32 (25%), Positives = 12/32 (37%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           D N +D  G TP   A         ++L+   
Sbjct: 82  DANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 38.5 bits (91), Expect = 2e-05
 Identities = 13/32 (40%), Positives = 16/32 (50%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           D NAKD   MT   WA    + E + LL+  G
Sbjct: 92  DVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 35.8 bits (84), Expect = 2e-04
 Identities = 8/32 (25%), Positives = 16/32 (50%)

Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
            +A+ +   TP   AA +G+   + +L+  G
Sbjct: 59 SRDARTKVDRTPLHMAASEGHANIVEVLLKHG 90

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 38.9 bits (92), Expect = 2e-05
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 8/53 (15%)

Query: 28  AAQDGMLD-----ILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           AA +G L+     +   A   D NA D  GMTP   AA  G+LE + +L+  G
Sbjct: 54  AAFNGHLEIVEVLLKNGA---DVNAVDHAGMTPLRLAALFGHLEIVEVLLKNG 103

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 38.5 bits (91), Expect = 2e-05
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 8/53 (15%)

Query: 28  AAQDGMLD-----ILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           AA  G L+     +   A   D NA D +G TP   AA  G+LE + +L+  G
Sbjct: 87  AALFGHLEIVEVLLKNGA---DVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG 136

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 38.5 bits (91), Expect = 3e-05
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          D NA+D  G TP   AAF G+LE + +L+  G
Sbjct: 39 DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG 70

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 37.0 bits (87), Expect = 1e-04
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 8/50 (16%)

Query: 28  AAQDGMLD-----ILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLV 72
           AA  G L+     +   A   D NA+D+ G T    +   GN +   +L 
Sbjct: 120 AAMFGHLEIVEVLLKNGA---DVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 38.2 bits (90), Expect = 3e-05
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
            N +D  G +P   AA  G L+ L++LV  G
Sbjct: 60 SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHG 91

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 37.8 bits (89), Expect = 4e-05
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 7/49 (14%)

Query: 28  AAQDGMLDI----LREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLV 72
           A Q+G   +      E+   D + +D  G+TP   A  +G  + + +L 
Sbjct: 108 AVQEGHTAVVSFLAAES---DLHRRDARGLTPLELALQRGAQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 37.4 bits (88), Expect = 7e-05
 Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 4/51 (7%)

Query: 28 AAQDGMLDILRE---ATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          AA  G +  +R          +A +  G T  L     G+      L+ +G
Sbjct: 9  AAARGDVQEVRRLLHRELVHPDALNRFGKTA-LQVMMFGSTAIALELLKQG 58

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 37.0 bits (87), Expect = 1e-04
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 8/50 (16%)

Query: 28  AAQDGMLDILR-----EATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLV 72
           AA+ G LD L+      A   D N  D  G  P   A  +G+   +  L 
Sbjct: 75  AARTGFLDTLKVLVEHGA---DVNVPDGTGALPIHLAVQEGHTAVVSFLA 121

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 37.8 bits (89), Expect = 4e-05
 Identities = 8/32 (25%), Positives = 15/32 (46%)

Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
            N       +P   AA  G+++ ++LL+  G
Sbjct: 68 LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYG 99

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 37.8 bits (89), Expect = 4e-05
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          A+  G +  +    +   D N KD  G TP   A   G+L+ + LL+   
Sbjct: 17 ASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 35.5 bits (83), Expect = 3e-04
 Identities = 6/28 (21%), Positives = 10/28 (35%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLL 71
             NA +  G+ P  +   +     L L 
Sbjct: 101 SRNAVNIFGLRPVDYTDDESMKSLLLLP 128

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 34.3 bits (80), Expect = 7e-04
 Identities = 6/29 (20%), Positives = 14/29 (48%)

Query: 47 AKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
            +  G T    A+ +G++ ++  L+  G
Sbjct: 5  FTNHRGETLLHIASIKGDIPSVEYLLQNG 33

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 37.7 bits (89), Expect = 4e-05
 Identities = 15/32 (46%), Positives = 18/32 (56%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           D NA D  G TP   AAF G+LE   +L+  G
Sbjct: 72  DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG 103

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 36.6 bits (86), Expect = 1e-04
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          D NAKDE G+TP   A   G+LE + +L+  G
Sbjct: 39 DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNG 70

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 35.4 bits (83), Expect = 3e-04
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLL 71
           D NA+D+ G T    +   GN +   +L
Sbjct: 105 DVNAQDKFGKTAFDISIGNGNEDLAEIL 132

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 38.2 bits (90), Expect = 5e-05
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 8/53 (15%)

Query: 28  AAQDGMLD-----ILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           AA+  +       I   A   D NA D+ G +   WAA   N++A  +L+  G
Sbjct: 99  AARLAVEGMLEDLINSHA---DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 148

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 37.8 bits (89), Expect = 7e-05
 Identities = 10/32 (31%), Positives = 14/32 (43%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           D +A+  DG TP + AA       L  L+   
Sbjct: 84  DLDARMHDGTTPLILAARLAVEGMLEDLINSH 115

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 37.0 bits (87), Expect = 1e-04
 Identities = 7/30 (23%), Positives = 15/30 (50%)

Query: 46  NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           + ++    TP   AA +G+ E  ++L+   
Sbjct: 152 DMQNNREETPLFLAAREGSYETAKVLLDHF 181

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 37.0 bits (87), Expect = 1e-04
 Identities = 8/30 (26%), Positives = 11/30 (36%)

Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          N  D  G T    AA     +A + L+   
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEAS 48

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 36.2 bits (85), Expect = 3e-04
 Identities = 8/32 (25%), Positives = 12/32 (37%)

Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          D N +D  G TP   A         ++L+   
Sbjct: 50 DANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 35.1 bits (82), Expect = 6e-04
 Identities = 6/30 (20%), Positives = 11/30 (36%)

Query: 46  NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           +  D     P   A  + + + +RLL    
Sbjct: 185 DITDHMDRLPRDIAQERMHHDIVRLLDEYN 214

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 38.1 bits (88), Expect = 7e-05
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 46  NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           NA+D +G T    AA  GN+  +  L+  G
Sbjct: 277 NAQDSNGDTCLNIAARLGNISIVDALLDYG 306

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 36.9 bits (85), Expect = 2e-04
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 4/74 (5%)

Query: 6   LLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREA---TKRDCNAK-DEDGMTPTLWAAF 61
            L  + +       S        + D +L  + +A   T+ + N   DE G TP  W   
Sbjct: 81  SLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTS 140

Query: 62  QGNLEALRLLVGRG 75
             NLE ++ LV  G
Sbjct: 141 IANLELVKHLVKHG 154

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 37.4 bits (88), Expect = 8e-05
 Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 3/51 (5%)

Query: 28 AAQDGMLDI---LREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          AA+ G ++    L      +C   +    TP  +AA    +  +  L+  G
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 65

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 37.0 bits (87), Expect = 9e-05
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 46  NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           N  D    TP   AA +G  E  +LL+  G
Sbjct: 102 NVADLWKFTPLHEAAAKGKYEICKLLLQHG 131

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 36.6 bits (86), Expect = 1e-04
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 44 DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          D +AKD+ G+ P   A   G+ E   LLV  G
Sbjct: 67 DVHAKDKGGLVPLHNACSYGHYEVAELLVKHG 98

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 37.3 bits (87), Expect = 9e-05
 Identities = 6/32 (18%), Positives = 12/32 (37%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
               KD+ G+T   +        AL+++    
Sbjct: 146 QLLIKDKWGLTALEFVKRCQKPIALKMMEDYI 177

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 37.6 bits (87), Expect = 1e-04
 Identities = 9/60 (15%), Positives = 14/60 (23%), Gaps = 2/60 (3%)

Query: 18  NSSYLLLPPRAAQDGMLDILRE--ATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           +     +         LD L     +         +       AA  G+L  L  L    
Sbjct: 92  SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELA 151

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 37.2 bits (87), Expect = 1e-04
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 9/55 (16%)

Query: 27 RAAQDGMLDILRE------ATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           AA++  +  L +          + + +   G T    AA   NLEA  +L+   
Sbjct: 9  LAAKENDVQALSKLLKFEGC---EVHQRGAMGETALHIAALYDNLEAAMVLMEAA 60

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 34.9 bits (81), Expect = 7e-04
 Identities = 8/34 (23%), Positives = 14/34 (41%)

Query: 42 KRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
               ++  +G T    A    N+  +R L+ RG
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLVRALLARG 98

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 37.1 bits (86), Expect = 1e-04
 Identities = 8/32 (25%), Positives = 13/32 (40%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
                +  G+TP   AA  G +  L  ++ R 
Sbjct: 225 LEEITNRKGLTPLALAASSGKIGVLAYILQRE 256

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 36.3 bits (84), Expect = 2e-04
 Identities = 10/42 (23%), Positives = 15/42 (35%)

Query: 34  LDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
            D L++            G T    A  + N+  + LLV  G
Sbjct: 83  TDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENG 124

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	75
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.89
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.89
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.87
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.86
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.84
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.84
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.83
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.83
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.83
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.83
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.83
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.83
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.82
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.82
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.82
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.82
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.81
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.81
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.81
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.81
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.81
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.81
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.81
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.81
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.81
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.81
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.8
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.8
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.8
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.8
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.8
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.8
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.79
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.79
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.79
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.79
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.79
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.79
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.78
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.78
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.78
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.78
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.78
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.77
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.77
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.77
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.77
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.77
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.76
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.76
2rfa_A	232	Transient receptor potential cation channel subfa	99.76
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.76
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.76
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.76
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.76
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.76
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.76
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.76
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.76
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.76
2etb_A	256	Transient receptor potential cation channel subfam	99.75
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.75
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.75
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.75
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.75
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.75
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.75
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.75
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.75
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.74
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.74
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.74
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.74
2pnn_A	273	Transient receptor potential cation channel subfa	99.74
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.74
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.73
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.73
2rfa_A	232	Transient receptor potential cation channel subfa	99.73
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.73
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.73
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.73
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.73
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.73
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.73
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.73
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.72
2pnn_A	273	Transient receptor potential cation channel subfa	99.72
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.72
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.72
2etb_A	256	Transient receptor potential cation channel subfam	99.72
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.72
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.72
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.72
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.71
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.71
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.71
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.71
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.7
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.7
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.7
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.69
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.68
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.67
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.67
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.67
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.67
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.66
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.65
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.64
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.64
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.63
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.63
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.52
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.42

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.89  E-value=3.1e-22  Score=91.83  Aligned_cols=74  Identities=31%  Similarity=0.399  Sum_probs=69.8

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++++|+..+++++.+|..|+||||+|+..++.+++++|+.  ++++.+|..|+||+|+|+..++.+++++|+++|
T Consensus        16 ~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~g   91 (93)
T 1n0q_A           16 EVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG   91 (93)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            46788999999999999999999999999999999999997  788899999999999999999999999999886

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.89  E-value=1.8e-22  Score=101.37  Aligned_cols=74  Identities=28%  Similarity=0.342  Sum_probs=58.1

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++++|+..+++++.+|..|+||||+|+..|+.+++++|+.  ++++.+|..|+|||++|+..|+.+++++|+++|
T Consensus        84 ~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G  159 (169)
T 4gpm_A           84 EVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQG  159 (169)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             HHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            35677778888888888888888888888888888888876  677777888888888888888888888887765

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.87  E-value=2.8e-21  Score=97.04  Aligned_cols=73  Identities=32%  Similarity=0.416  Sum_probs=55.5

Q ss_pred             HHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          3 ILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         3 ~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      ++.+|+..+++++.+|..|+||||+|+..|+.+++++|+.  ++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus        52 ~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~g  126 (169)
T 4gpm_A           52 VVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG  126 (169)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            4566677777777777777788888888888888877775  677777777888888888888888888777664

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.86  E-value=2e-20  Score=89.35  Aligned_cols=74  Identities=26%  Similarity=0.261  Sum_probs=69.1

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .+++.|+..+++++.+|..|+||||+|+..++.+++++|+.  ++++.+|..|+||||+|+..++.+++++|+++|
T Consensus        21 ~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g   96 (123)
T 3aaa_C           21 DEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKG   96 (123)
T ss_dssp             HHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            45788999999999999999999999999999999999997  788899999999999999999999999999875

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.84  E-value=3.5e-20  Score=89.83  Aligned_cols=74  Identities=24%  Similarity=0.196  Sum_probs=58.2

Q ss_pred             hHHHHHHHhCCCCCCCCCC-CCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSS-YLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~-~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++++|+..+++++.+|.. |+||||+|+..++.+++++|+.  ++++.+|..|.||+++|+..++.+++++|+++|
T Consensus        58 ~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G  134 (136)
T 1d9s_A           58 QVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT  134 (136)
T ss_dssp             HHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            3567777788888888877 7888888888888888888876  667777778888888888888888888887654

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.84  E-value=8.7e-20  Score=88.42  Aligned_cols=72  Identities=25%  Similarity=0.132  Sum_probs=34.7

Q ss_pred             HHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          4 LVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         4 ~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      +++|+..+++++.+|..|.||||+|+..++.+++++|+.  ++++..|..|.||+++|+..++.+++++|+++|
T Consensus        63 v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           63 VEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            344444444444444445555555555555555544443  344444444555555555555555555554443

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.83  E-value=1.1e-19  Score=88.05  Aligned_cols=74  Identities=32%  Similarity=0.336  Sum_probs=69.2

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++++|+..+++++.+|..|+||||+|+..++.+++++|+.  ++++..|..|.||||+|+..++.+++++|+++|
T Consensus        28 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g  103 (136)
T 2jab_A           28 DEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG  103 (136)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            46788999999999999999999999999999999999997  788889999999999999999999999999875

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.83  E-value=5e-20  Score=97.87  Aligned_cols=74  Identities=18%  Similarity=0.130  Sum_probs=68.7

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++.+|+..+++++.+|..|+||||+|+..|+.+++++|+.  ++++..+..|+||||+|+..|+.+++++|+++|
T Consensus       133 ~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~G  208 (269)
T 4b93_B          133 QVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHG  208 (269)
T ss_dssp             HHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCC
Confidence            35788899999999999999999999999999999999997  788999999999999999999999999999876

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.83  E-value=1.3e-19  Score=87.84  Aligned_cols=74  Identities=18%  Similarity=0.171  Sum_probs=68.8

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++++|+..+++++.+|..|+||||+|+..++.+++++++.  ++++..|..|.||||+|+..++.+++++|+++|
T Consensus        24 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   99 (137)
T 3c5r_A           24 PSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYG   99 (137)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            45788999999999999999999999999999999999997  778889999999999999999999999999875

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.83  E-value=5.5e-20  Score=98.15  Aligned_cols=74  Identities=16%  Similarity=0.033  Sum_probs=69.5

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++++|+..+++++.+|..|+||||+|+..|+.+++++|+.  ++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus       186 ~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  261 (278)
T 1dcq_A          186 HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQAL  261 (278)
T ss_dssp             HHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            46889999999999999999999999999999999999997  889999999999999999999999999998753

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.83  E-value=8.9e-20  Score=90.09  Aligned_cols=74  Identities=24%  Similarity=0.230  Sum_probs=66.8

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCC-hHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLL-LPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~-~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++++|+..+++++.+|..|+| |||+|+..++.+++++|+.  ++++.++..|.||||+|+..++.+++++|+++|
T Consensus        58 ~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~g  134 (156)
T 1bi7_B           58 RVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAA  134 (156)
T ss_dssp             HHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC
T ss_pred             HHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcC
Confidence            4678889999999999999998 9999999999999999986  788889999999999999999999999998775

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.83  E-value=2e-19  Score=93.69  Aligned_cols=74  Identities=20%  Similarity=0.126  Sum_probs=69.0

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++++|+..+++++.+|..|+||||+|+..|+.+++++|+.  ++++..|..|+||||+|+..|+.+++++|+++|
T Consensus        35 ~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g  110 (229)
T 2vge_A           35 EVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHG  110 (229)
T ss_dssp             HHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred             HHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            46788999999999999999999999999999999999997  788899999999999999999999999999875

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.82  E-value=2.8e-19  Score=88.73  Aligned_cols=74  Identities=23%  Similarity=0.204  Sum_probs=67.2

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++++|+..+++++.+|..|+||||+|+..++.+++++|+.  ++++..|..|+||||+|+..++.+++++|+++|
T Consensus        56 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  131 (165)
T 3twr_A           56 SVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG  131 (165)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            46788899999999999999999999999999999999996  778888999999999999999999999998875

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.82  E-value=1.1e-19  Score=94.91  Aligned_cols=74  Identities=23%  Similarity=0.262  Sum_probs=69.0

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++++|+..+++++.+|..|.||||+|+..|+.+++++|+.  ++++.+|..|+||||+|+..++.+++++|+++|
T Consensus        51 ~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  126 (239)
T 1ycs_B           51 DLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG  126 (239)
T ss_dssp             HHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            46788899999999999999999999999999999999997  788999999999999999999999999999875

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.82  E-value=1.1e-19  Score=88.01  Aligned_cols=73  Identities=19%  Similarity=0.036  Sum_probs=68.2

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCC-CchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDED-GMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~-~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++++|+..+++++.+|..|+||||+|+. ++.+++++|+.  ++++.+|.. |+||||+|+..++.+++++|+++|
T Consensus        26 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  101 (136)
T 1d9s_A           26 ETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAG  101 (136)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTC
T ss_pred             HHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            46788999999999999999999999999 99999999997  788899999 999999999999999999999875

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.82  E-value=2.5e-19  Score=101.46  Aligned_cols=74  Identities=18%  Similarity=0.007  Sum_probs=70.4

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++.+|+..+++++.+|..|+||||+|+..|+.+++++|+.  ++++..|..|.||||+|+..|+.+++++|+++|
T Consensus       188 ~~v~~Ll~~ga~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~g  263 (497)
T 3lvq_E          188 PLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQ  263 (497)
T ss_dssp             HHHHHHHHHSCCTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             HHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence            46889999999999999999999999999999999999997  889999999999999999999999999999876

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.81  E-value=3.9e-19  Score=87.43  Aligned_cols=74  Identities=26%  Similarity=0.246  Sum_probs=56.8

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++++|+..+++++.++..|+||||+|+..++.+++++++.  ++++..|..|.||||+|+..++.+++++|+++|
T Consensus        48 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  123 (153)
T 1awc_B           48 STTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG  123 (153)
T ss_dssp             HHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            35667777777777777778888888888888888887775  667777777888888888888888888877664

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.81  E-value=1e-19  Score=85.95  Aligned_cols=74  Identities=26%  Similarity=0.268  Sum_probs=68.9

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++++|+..+++++.+|..|.||||+|+..++.+++++|+.  ++++..|..|.|||++|+..++.+++++|+++|
T Consensus        23 ~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~g   98 (115)
T 2l6b_A           23 EEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKG   98 (115)
T ss_dssp             HHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTS
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            45788899999999999999999999999999999999996  788889999999999999999999999999876

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.81  E-value=6e-19  Score=88.61  Aligned_cols=74  Identities=28%  Similarity=0.293  Sum_probs=59.8

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++++|+..+++++.+|..|.||||+|+..++.+++++|+.  ++++..|..|.||||+|+..++.+++++|+++|
T Consensus        53 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g  128 (179)
T 3f6q_A           53 AVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG  128 (179)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            35677788888888888888888888888888888888886  677778888888888888888888888887765

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.81  E-value=3.7e-19  Score=87.95  Aligned_cols=73  Identities=22%  Similarity=0.196  Sum_probs=47.8

Q ss_pred             HHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cC-CCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          3 ILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RD-CNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         3 ~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~-~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      ++++|+..+++++.+|..|.||||+|+..++.+++++|+.  ++ .+..+..|.||+++|+..++.+++++|+++|
T Consensus        85 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  160 (162)
T 1ihb_A           85 TLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  160 (162)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhC
Confidence            4566666666666666666666676666666666666665  32 4566666667777776666767776666654

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.81  E-value=6.9e-19  Score=86.97  Aligned_cols=74  Identities=27%  Similarity=0.328  Sum_probs=69.2

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++++|+..+++++.+|..|.||||+|+..++.+++++++.  ++++.+|..|.||||+|+..++.+++++|+++|
T Consensus        51 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  126 (162)
T 1ihb_A           51 EIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT  126 (162)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcc
Confidence            46889999999999999999999999999999999999997  788899999999999999999999999998764

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.81  E-value=3.2e-19  Score=96.55  Aligned_cols=73  Identities=23%  Similarity=0.140  Sum_probs=68.2

Q ss_pred             HHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh---cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          3 ILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK---RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         3 ~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~---~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      ++.+|+..+++++.+|..|+||||+|+..++.++++.|+.   ++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus       221 i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G  296 (337)
T 4g8k_A          221 ITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG  296 (337)
T ss_dssp             HHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTS
T ss_pred             HHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            5678899999999999999999999999999999999985   678999999999999999999999999999886

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.81  E-value=8e-19  Score=86.36  Aligned_cols=71  Identities=25%  Similarity=0.287  Sum_probs=50.5

Q ss_pred             HHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHh
Q psy13529          3 ILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVG   73 (75)
Q Consensus         3 ~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~   73 (75)
                      ++++|+..+++++.+|..|.||||+|+..|+.+++++++.  ++++.+|..|.||||+|+..++.+++++|++
T Consensus        50 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  122 (156)
T 1bd8_A           50 IALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA  122 (156)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHh
Confidence            4566677777777777777777777777777777777765  5666667777777777777777777777664

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.81  E-value=7.7e-19  Score=83.52  Aligned_cols=73  Identities=32%  Similarity=0.404  Sum_probs=50.5

Q ss_pred             HHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          3 ILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         3 ~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      ++.+|+..+++++.+|..|.||+|+|+..++.+++++++.  ++++..+..|.||+++|+..++.+++++|+++|
T Consensus        50 ~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  124 (126)
T 1n0r_A           50 VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG  124 (126)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            4566666667777777777777777777777777777765  556666666777777777777777777776654

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.81  E-value=9.1e-19  Score=82.39  Aligned_cols=70  Identities=21%  Similarity=0.179  Sum_probs=65.5

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHH
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLL   71 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L   71 (75)
                      .++++|+..+++++.+|..|.||||+|+..++.+++++|+.  ++++..|..|.|||++|+..++.+++++|
T Consensus        38 ~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           38 DEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHcCCHHHHHHh
Confidence            46788999999999999999999999999999999999997  78888999999999999999999999987

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.81  E-value=9.1e-19  Score=87.37  Aligned_cols=73  Identities=23%  Similarity=0.209  Sum_probs=47.5

Q ss_pred             HHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          3 ILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         3 ~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      ++++|+..+++++.+|..|.||||+|+..++.+++++++.  ++++..|..|.||||+|+..++.+++++|+++|
T Consensus        51 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  125 (172)
T 3v30_A           51 TVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARG  125 (172)
T ss_dssp             HHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            4556666666666666666666666666666666666664  556666666666666666666666666666553

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.80  E-value=9.7e-19  Score=86.06  Aligned_cols=73  Identities=23%  Similarity=0.261  Sum_probs=68.6

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh-cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK-RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGR   74 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~   74 (75)
                      .++++|+..+++++.+|..|+||||+|+..++.+++++|+. ++++..|..|.||+++|+..++.+++++|+++
T Consensus        82 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           82 DTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhccCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            46788999999999999999999999999999999999997 78888999999999999999999999999875

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.80  E-value=1.7e-18  Score=86.40  Aligned_cols=21  Identities=43%  Similarity=0.645  Sum_probs=7.7

Q ss_pred             CCchHHHHHHHhCCHHHHHHH
Q psy13529         51 DGMTPTLWAAFQGNLEALRLL   71 (75)
Q Consensus        51 ~~~t~l~~a~~~~~~~~~~~L   71 (75)
                      .|.||||+|+..++.+++++|
T Consensus       112 ~g~t~L~~A~~~~~~~~v~~L  132 (169)
T 2y1l_E          112 EGHTPLHLAAMFGHLEIVEVL  132 (169)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHH
Confidence            333333333333333333333

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.80  E-value=5.5e-19  Score=95.17  Aligned_cols=74  Identities=18%  Similarity=0.007  Sum_probs=69.2

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++++|+..+++++.+|..|+||||+|+..|+.+++++|+.  ++++..|..|.|||++|+..++.+++++|+++|
T Consensus       207 ~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~g  282 (301)
T 2b0o_E          207 PLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQ  282 (301)
T ss_dssp             HHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhc
Confidence            46889999999999999999999999999999999999997  889999999999999999999999999998753

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.80  E-value=8.6e-19  Score=90.48  Aligned_cols=74  Identities=22%  Similarity=0.179  Sum_probs=68.5

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh---cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK---RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~---~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++++|+..+++++.+|..|+||||+|+..|+.+++++|+.   ++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus        87 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  163 (222)
T 3ehr_A           87 SWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKG  163 (222)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            46788999999999999999999999999999999999985   678889999999999999999999999998765

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.80  E-value=1.7e-18  Score=87.68  Aligned_cols=71  Identities=15%  Similarity=0.057  Sum_probs=35.6

Q ss_pred             HHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhC
Q psy13529          4 LVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGR   74 (75)
Q Consensus         4 ~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~   74 (75)
                      +++|+..+++++.+|..|.||||+|+..++.+++++++.  ++++..+..|.||||+|+..++.+++++|+++
T Consensus        84 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  156 (192)
T 2rfm_A           84 AEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL  156 (192)
T ss_dssp             HHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            444444455555555555555555555555555555543  44444444555555555555555555555443

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.80  E-value=2.2e-18  Score=85.96  Aligned_cols=74  Identities=26%  Similarity=0.146  Sum_probs=68.7

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++++|+..+++++.+|..|.||||+|+..++.+++++|+.  ++++..|..|.||+++|+..++.+++++|++.|
T Consensus        94 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E           94 EIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            46788999999999999999999999999999999999997  788889999999999999999999999999887

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.79  E-value=2.1e-18  Score=85.70  Aligned_cols=71  Identities=23%  Similarity=0.273  Sum_probs=34.7

Q ss_pred             HHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhC
Q psy13529          4 LVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGR   74 (75)
Q Consensus         4 ~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~   74 (75)
                      +++|+..+++++..+..|.||||+|+..++.+++++++.  ++++..|..|.||||+|+..++.+++++|+++
T Consensus        52 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  124 (167)
T 3v31_A           52 VEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES  124 (167)
T ss_dssp             HHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            344444444444444445555555555555555554443  34444444455555555555555555554443

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.79  E-value=8.4e-19  Score=88.50  Aligned_cols=72  Identities=21%  Similarity=0.076  Sum_probs=65.4

Q ss_pred             HHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCC-CCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          3 ILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKD-EDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         3 ~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~-~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      +++.|+. +++++.+|..|+||||+|+..++.+++++|+.  ++++..+ ..|+||||+|+..++.+++++|+++|
T Consensus        59 ~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g  133 (183)
T 3deo_A           59 ALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELG  133 (183)
T ss_dssp             HHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcC
Confidence            4667777 89999999999999999999999999999997  7788887 78999999999999999999998765

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.79  E-value=2.4e-18  Score=91.63  Aligned_cols=74  Identities=24%  Similarity=0.244  Sum_probs=69.1

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .+++.|+..+++++..|..|.||||+|+..|+.+++++|+.  ++++..|..|.||||+|+..|+.+++++|+++|
T Consensus        54 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g  129 (299)
T 1s70_B           54 EEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQG  129 (299)
T ss_dssp             HHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Confidence            46788999999999999999999999999999999999997  788889999999999999999999999999875

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.79  E-value=1.7e-18  Score=92.13  Aligned_cols=72  Identities=21%  Similarity=0.128  Sum_probs=51.6

Q ss_pred             HHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh---cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhC
Q psy13529          3 ILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK---RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGR   74 (75)
Q Consensus         3 ~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~---~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~   74 (75)
                      ++++|+..+++++.+|..|+||||+|+..|+.+++++|+.   ++++..|..|.|||++|+..|+.+++++|+++
T Consensus       198 ~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  272 (276)
T 4hbd_A          198 VVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSR  272 (276)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            5666777777777777777777777777777777777764   55666777777777777777777777777654

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.79  E-value=2.6e-18  Score=90.68  Aligned_cols=74  Identities=23%  Similarity=0.096  Sum_probs=68.4

Q ss_pred             hHHHHHHHhCCCCCCCCC-CCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANS-SYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~-~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++++|+..+++++.++. .|+||||+|+..++.+++++|+.  ++++.++..|.||||+|+..++.+++++|+++|
T Consensus       172 ~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  248 (282)
T 1oy3_D          172 EMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHG  248 (282)
T ss_dssp             HHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcC
Confidence            467899999999999885 49999999999999999999997  888999999999999999999999999999886

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.79  E-value=5.2e-18  Score=80.63  Aligned_cols=74  Identities=31%  Similarity=0.399  Sum_probs=68.6

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++++|+..+.+++..+..|.+|+|+|+..++.+++++++.  ++++..+..|.||||+|+..++.+++++|+++|
T Consensus        16 ~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g   91 (126)
T 1n0r_A           16 EVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG   91 (126)
T ss_dssp             HHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcC
Confidence            46788999999999999999999999999999999999997  778889999999999999999999999998865

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.78  E-value=1.9e-18  Score=86.23  Aligned_cols=74  Identities=14%  Similarity=0.029  Sum_probs=68.7

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++++|+..+++++.+|..|.||||+|+..++.+++++|+.  ++++.++..|.||+++|+..++.+++++|+++|
T Consensus        83 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~  158 (172)
T 3v30_A           83 DIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI  158 (172)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999997  788889999999999999999999999998753

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.78  E-value=1.4e-18  Score=91.14  Aligned_cols=72  Identities=21%  Similarity=0.076  Sum_probs=65.7

Q ss_pred             HHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCC-CCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          3 ILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKD-EDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         3 ~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~-~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      +++.|+. +++++.+|..|+||||+|+..|+.+++++|+.  ++++..+ ..|+||||+|+..|+.+++++|+++|
T Consensus        60 ~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  134 (244)
T 3ui2_A           60 ALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELG  134 (244)
T ss_dssp             HHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            5667777 89999999999999999999999999999997  7888887 77999999999999999999999875

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.78  E-value=3.9e-18  Score=92.03  Aligned_cols=74  Identities=28%  Similarity=0.318  Sum_probs=69.6

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++.+|+..+++++.+|..|.||||+|+..++.+++++|+.  ++++..|..|+||||+|+..++.+++++|+++|
T Consensus       228 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g  303 (351)
T 3utm_A          228 QVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYG  303 (351)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            36788999999999999999999999999999999999997  789999999999999999999999999999876

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.78  E-value=3.7e-18  Score=89.56  Aligned_cols=73  Identities=19%  Similarity=0.111  Sum_probs=51.6

Q ss_pred             HHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          3 ILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         3 ~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      ++++|+..+++++.+|..|+||||+|+..++.+++++|+.  ++++..+..|.||||+|+..++.+++++|+++|
T Consensus       139 ~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g  213 (253)
T 1yyh_A          139 MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF  213 (253)
T ss_dssp             HHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            4566677777777777777777777777777777777765  566666777777777777777777777776654

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.78  E-value=2.3e-18  Score=87.23  Aligned_cols=74  Identities=19%  Similarity=0.179  Sum_probs=68.9

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++++|+..+++++.+|..|.||||+|+..++.+++++|+.  ++++.+|..|.||+++|+..++.+++++|+++|
T Consensus       115 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          115 EMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             HHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            46788999999999999999999999999999999999997  788889999999999999999999999998753

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.77  E-value=9.7e-18  Score=85.14  Aligned_cols=74  Identities=20%  Similarity=0.099  Sum_probs=63.7

Q ss_pred             hHHHHHHHhC-CCCCCCCCCCCChHHHHHhcCC-----HHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHh
Q psy13529          2 AILVLLVTNR-AYGPQANSSYLLLPPRAAQDGM-----LDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVG   73 (75)
Q Consensus         2 ~~~~~ll~~~-~~~~~~d~~~~~~l~~a~~~~~-----~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~   73 (75)
                      .++++|+..+ ++++.+|..|.||+|+|+..+.     .+++++|+.  ++++.+|..|.||+++|+..++.+++++|++
T Consensus       120 ~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  199 (201)
T 3hra_A          120 DNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ  199 (201)
T ss_dssp             HHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHh
Confidence            3577888887 7888888899999999998887     888888886  7788888889999999999999999999988


Q ss_pred             CC
Q psy13529         74 RG   75 (75)
Q Consensus        74 ~g   75 (75)
                      +|
T Consensus       200 ~G  201 (201)
T 3hra_A          200 YN  201 (201)
T ss_dssp             CC
T ss_pred             cC
Confidence            87

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.77  E-value=8.7e-18  Score=83.47  Aligned_cols=74  Identities=12%  Similarity=0.099  Sum_probs=68.4

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .+++.|+..+.+++.+|..|.||||+|+..++.+++++++.  ++++..+..|.||||+|+..++.+++++|+++|
T Consensus        17 ~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   92 (167)
T 3v31_A           17 LYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCG   92 (167)
T ss_dssp             HHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCC
Confidence            46788899999999999999999999999999999999997  778889999999999999999999999998764

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.77  E-value=1.6e-18  Score=85.56  Aligned_cols=73  Identities=22%  Similarity=0.085  Sum_probs=67.1

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCch-HHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMT-PTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t-~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++++|+..+++++.+|..|+||||+|+ .++.+++++|+.  ++++..+..|.| |||+|+..++.+++++|+++|
T Consensus        26 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~g  101 (156)
T 1bi7_B           26 EEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAG  101 (156)
T ss_dssp             HHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcC
Confidence            4678899999999999999999999985 899999999997  788999999999 999999999999999998764

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.77  E-value=1.3e-17  Score=85.82  Aligned_cols=71  Identities=20%  Similarity=0.127  Sum_probs=35.2

Q ss_pred             HHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhC
Q psy13529          4 LVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGR   74 (75)
Q Consensus         4 ~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~   74 (75)
                      +++|+..+++++.+|..|.||||+|+..++.+++++++.  ++++..+..|.||||+|+..++.+++++|+++
T Consensus       108 ~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  180 (223)
T 2f8y_A          108 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH  180 (223)
T ss_dssp             HHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence            444444445555545455555555555555555555543  44444444455555555555555555555443

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.76  E-value=1.4e-17  Score=81.86  Aligned_cols=70  Identities=14%  Similarity=0.074  Sum_probs=65.8

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHH
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLL   71 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L   71 (75)
                      .++++|+..+++++.+|..|.||+|+|+..++.+++++|+.  ++++.++..|.||+++|+..|+.+++++|
T Consensus        81 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           81 NIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            46788999999999999999999999999999999999997  78888999999999999999999999987

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.76  E-value=1.4e-17  Score=88.53  Aligned_cols=72  Identities=22%  Similarity=0.271  Sum_probs=66.3

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHh
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVG   73 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~   73 (75)
                      .++.+|+..+...+..+..|+||||+|+..|+.+++++|+.  ++++.+|..|+||||+|+..|+.+++++|++
T Consensus       164 ~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~  237 (276)
T 4hbd_A          164 ETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLA  237 (276)
T ss_dssp             HHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             HHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHh
Confidence            35677888888888888899999999999999999999997  8889999999999999999999999999997

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.76  E-value=6.1e-18  Score=87.51  Aligned_cols=74  Identities=16%  Similarity=0.089  Sum_probs=66.1

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHH----HHHHh--cCC------CCCCCCCchHHHHHHHhCCHHHHH
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDIL----REATK--RDC------NAKDEDGMTPTLWAAFQGNLEALR   69 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~----~~l~~--~~~------~~~~~~~~t~l~~a~~~~~~~~~~   69 (75)
                      .++++|+..+++++.+|..|+||||+|+..++.+++    ++++.  ++.      +..|..|.|||++|+..|+.++++
T Consensus       135 ~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~  214 (232)
T 2rfa_A          135 EIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQ  214 (232)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHH
Confidence            468899999999999999999999999999999988    77776  444      578899999999999999999999


Q ss_pred             HHHhCC
Q psy13529         70 LLVGRG   75 (75)
Q Consensus        70 ~L~~~g   75 (75)
                      +|+++|
T Consensus       215 ~Ll~~g  220 (232)
T 2rfa_A          215 HLMQKR  220 (232)
T ss_dssp             HHHHHH
T ss_pred             HHHhcC
Confidence            998764

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.76  E-value=1.1e-17  Score=88.19  Aligned_cols=73  Identities=23%  Similarity=0.140  Sum_probs=66.6

Q ss_pred             HHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh---cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          3 ILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK---RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         3 ~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~---~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      ++.+|+..+++++.+|..|.||||+|+..++.+++++|+.   ++++..|..|.||+++|+..++.+++++|+++|
T Consensus       201 i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~G  276 (285)
T 1wdy_A          201 ITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG  276 (285)
T ss_dssp             HHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcC
Confidence            5678889999999999999999999999999999999986   678889999999999999999999999999876

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.76  E-value=1.5e-17  Score=89.82  Aligned_cols=74  Identities=26%  Similarity=0.192  Sum_probs=58.0

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++++|+..+++++.+|..|.||||+|+..|+.+++++|+.  ++++..+..|.||||+|+..++.+++++|+++|
T Consensus        72 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  147 (351)
T 3utm_A           72 RIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHG  147 (351)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            35677777788888888888888888888888888888876  667777777888888888888888888887654

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.76  E-value=6.8e-18  Score=92.13  Aligned_cols=72  Identities=14%  Similarity=0.058  Sum_probs=35.5

Q ss_pred             HHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cC-----CCCCCCCCchHHHHHHHhCCHHHHHHHHhC
Q psy13529          3 ILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RD-----CNAKDEDGMTPTLWAAFQGNLEALRLLVGR   74 (75)
Q Consensus         3 ~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~-----~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~   74 (75)
                      ++++|+..+++++.+|..|.||||+|+..|+.+++++|+.  ++     ++..+..|+||||+|+..|+.+++++|+++
T Consensus       155 ~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  233 (364)
T 3ljn_A          155 MIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM  233 (364)
T ss_dssp             HHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTT
T ss_pred             HHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence            3444455555555555555555555555555555555543  23     444444455555555555555555555443

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.76  E-value=1.8e-17  Score=85.31  Aligned_cols=74  Identities=19%  Similarity=0.089  Sum_probs=69.5

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++++|+..+++++.+|..|.||+|+|+..++.+++++|+.  ++.+..+..|.||+++|+..++.+++++|+++|
T Consensus       139 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g  214 (223)
T 2f8y_A          139 DAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYN  214 (223)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcC
Confidence            46788999999999999999999999999999999999997  788889999999999999999999999999876

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.76  E-value=1.4e-17  Score=85.80  Aligned_cols=74  Identities=27%  Similarity=0.274  Sum_probs=58.7

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh---cCCCCCCCCCchHHHHHHHhCCHHHHHHHH-hCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK---RDCNAKDEDGMTPTLWAAFQGNLEALRLLV-GRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~---~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~-~~g   75 (75)
                      .++++|+..+++++.+|..|.||||+|+..++.+++++++.   ++++..|..|+||||+|+..++.+++++|+ ++|
T Consensus       121 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~g  198 (228)
T 2dzn_A          121 EVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG  198 (228)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred             hHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC
Confidence            35677788888888888888888888888888888888875   557777888888888888888888888887 443

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.76  E-value=1.6e-17  Score=91.70  Aligned_cols=73  Identities=18%  Similarity=0.095  Sum_probs=45.2

Q ss_pred             HHHHHHHhCCCCCCCC--CCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          3 ILVLLVTNRAYGPQAN--SSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         3 ~~~~ll~~~~~~~~~d--~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      ++..|+..+++++..+  ..|.||||+|+..++.+++++|+.  ++++..|..|+||||+|+..++.+++++|+++|
T Consensus       215 ~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~G  291 (368)
T 3jue_A          215 TMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRG  291 (368)
T ss_dssp             HHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCc
Confidence            4555566666666655  556666666666666666666664  556666666666666666666666666666543

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.76  E-value=2.5e-17  Score=82.69  Aligned_cols=74  Identities=16%  Similarity=0.112  Sum_probs=66.6

Q ss_pred             hHHHHHHHh-CCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTN-RAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~-~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .+++.|+.. +.+++.+|..|+||||+|+..++.+++++|+.  ++++..+..|.||||+|+..++.+++++|+++|
T Consensus        19 ~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   95 (179)
T 3f6q_A           19 VAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK   95 (179)
T ss_dssp             HHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            356777776 56788999999999999999999999999997  788889999999999999999999999999875

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.76  E-value=2e-17  Score=85.47  Aligned_cols=73  Identities=26%  Similarity=0.285  Sum_probs=49.9

Q ss_pred             HHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          3 ILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         3 ~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      ++++|+..+++++.+|..|.||+|+|+..++.+++++++.  ++++.+|..|.||||+|+..++.+++++|+++|
T Consensus       121 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  195 (231)
T 3aji_A          121 IAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG  195 (231)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCC
Confidence            4566666666666666667777777777777777776665  556666666777777777777777777776654

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.76  E-value=9.7e-18  Score=91.52  Aligned_cols=74  Identities=15%  Similarity=0.019  Sum_probs=69.0

Q ss_pred             hHHHHHHHhCCC-----CCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhC
Q psy13529          2 AILVLLVTNRAY-----GPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGR   74 (75)
Q Consensus         2 ~~~~~ll~~~~~-----~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~   74 (75)
                      .++.+|+..+++     ++.+|..|+||||+|+..|+.+++++|+.  ++++..|..|.|||++|+..|+.+++++|+++
T Consensus       187 ~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  266 (364)
T 3ljn_A          187 EALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQK  266 (364)
T ss_dssp             HHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHH
T ss_pred             HHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHc
Confidence            468899999988     99999999999999999999999999997  88999999999999999999999999999876


Q ss_pred             C
Q psy13529         75 G   75 (75)
Q Consensus        75 g   75 (75)
                      |
T Consensus       267 ~  267 (364)
T 3ljn_A          267 T  267 (364)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.75  E-value=3.6e-18  Score=89.58  Aligned_cols=74  Identities=18%  Similarity=0.207  Sum_probs=67.0

Q ss_pred             hHHHHHHH---hCCCCCCCCCCCCChHHHHHh--cCCHH-------HHHHHHh--cCC-------CCCCCCCchHHHHHH
Q psy13529          2 AILVLLVT---NRAYGPQANSSYLLLPPRAAQ--DGMLD-------ILREATK--RDC-------NAKDEDGMTPTLWAA   60 (75)
Q Consensus         2 ~~~~~ll~---~~~~~~~~d~~~~~~l~~a~~--~~~~~-------~~~~l~~--~~~-------~~~~~~~~t~l~~a~   60 (75)
                      .++++|+.   .+++++.+|..|+||||+|+.  .++.+       ++++|+.  +++       +.+|..|.||||+|+
T Consensus       150 ~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~  229 (256)
T 2etb_A          150 DVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAA  229 (256)
T ss_dssp             HHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHH
T ss_pred             HHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHH
Confidence            46789999   899999999999999999999  78888       9999986  666       789999999999999


Q ss_pred             HhCCHHHHHHHHhCC
Q psy13529         61 FQGNLEALRLLVGRG   75 (75)
Q Consensus        61 ~~~~~~~~~~L~~~g   75 (75)
                      ..|+.+++++|+++|
T Consensus       230 ~~g~~~~v~~Ll~~g  244 (256)
T 2etb_A          230 KEGKIEIFRHILQRE  244 (256)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHhCC
Confidence            999999999999864

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.75  E-value=2.6e-17  Score=85.33  Aligned_cols=74  Identities=22%  Similarity=0.150  Sum_probs=63.6

Q ss_pred             hHHHHHHHhCCCCCCCC-CCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQAN-SSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d-~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++.+|+..+++++..+ ..|.||||+|+..++.+++++|+.  ++++..+..|.||||+|+..++.+++++|+++|
T Consensus       130 ~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  206 (241)
T 1k1a_A          130 ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSG  206 (241)
T ss_dssp             HHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            35778888888888887 778999999999999999998886  778888888999999999999999999988775

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.75  E-value=1.4e-17  Score=88.87  Aligned_cols=74  Identities=12%  Similarity=0.054  Sum_probs=59.2

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCC-chHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDG-MTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~-~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++++|+..+++++.+|..|+||||+|+..|+.+++++|+.  ++++..+..| .||||+|+..++.+++++|+++|
T Consensus        76 ~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g  152 (285)
T 3kea_A           76 KIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI  152 (285)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTS
T ss_pred             HHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence            46777888888888888888888888888888888888886  6677777777 68888888888888888887664

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.75  E-value=1.6e-17  Score=92.28  Aligned_cols=73  Identities=22%  Similarity=0.245  Sum_probs=56.5

Q ss_pred             HHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          3 ILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         3 ~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      ++.+|+..+++++.+|..|+||||+|+..|+.+++++|+.  ++++.++..|+||||+|+..|+.+++++|+++|
T Consensus       293 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g  367 (437)
T 1n11_A          293 VADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG  367 (437)
T ss_dssp             HHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCc
Confidence            5667777777777777778888888888888888887775  667777777888888888888888888877765

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.75  E-value=4.1e-18  Score=89.45  Aligned_cols=74  Identities=15%  Similarity=0.124  Sum_probs=66.0

Q ss_pred             hHHHHHHH---hCCCCCCCCCCCCChHHHHHhcCC---------HHHHHHHHh--cCC-------CCCCCCCchHHHHHH
Q psy13529          2 AILVLLVT---NRAYGPQANSSYLLLPPRAAQDGM---------LDILREATK--RDC-------NAKDEDGMTPTLWAA   60 (75)
Q Consensus         2 ~~~~~ll~---~~~~~~~~d~~~~~~l~~a~~~~~---------~~~~~~l~~--~~~-------~~~~~~~~t~l~~a~   60 (75)
                      .++++|+.   .+++++.+|..|+||||+|+..++         .+++++|+.  +++       +..|..|+||||+|+
T Consensus       154 ~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~  233 (260)
T 3jxi_A          154 HIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAA  233 (260)
T ss_dssp             HHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             HHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHH
Confidence            46889999   899999999999999999998777         688888886  555       678999999999999


Q ss_pred             HhCCHHHHHHHHhCC
Q psy13529         61 FQGNLEALRLLVGRG   75 (75)
Q Consensus        61 ~~~~~~~~~~L~~~g   75 (75)
                      ..|+.+++++|+++|
T Consensus       234 ~~g~~~~v~~Ll~~g  248 (260)
T 3jxi_A          234 KTGKIGIFQHIIRRE  248 (260)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHhC
Confidence            999999999999864

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.75  E-value=1.4e-17  Score=94.40  Aligned_cols=74  Identities=20%  Similarity=0.167  Sum_probs=67.7

Q ss_pred             hHHHHHHHhCCCCCCC------CCCCCChHHHHHh---cCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHH
Q psy13529          2 AILVLLVTNRAYGPQA------NSSYLLLPPRAAQ---DGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRL   70 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~------d~~~~~~l~~a~~---~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~   70 (75)
                      ..+..|+..+++++.+      |..|+||||+|+.   .|+.+++++|+.  ++++.+|..|+||||+|+..|+.+++++
T Consensus       146 ~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~A~~~g~~~~v~~  225 (497)
T 3lvq_E          146 LSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKL  225 (497)
T ss_dssp             HHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHHHTTTTCHHHHHH
T ss_pred             HHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHH
Confidence            3578889999999877      8899999999965   999999999997  8899999999999999999999999999


Q ss_pred             HHhCC
Q psy13529         71 LVGRG   75 (75)
Q Consensus        71 L~~~g   75 (75)
                      |+++|
T Consensus       226 Ll~~g  230 (497)
T 3lvq_E          226 LLKGR  230 (497)
T ss_dssp             HHHTC
T ss_pred             HHHcC
Confidence            99876

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.75  E-value=4.4e-18  Score=88.35  Aligned_cols=73  Identities=18%  Similarity=-0.010  Sum_probs=39.6

Q ss_pred             HHHHHHHhCCCCCCCCC-CCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          3 ILVLLVTNRAYGPQANS-SYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         3 ~~~~ll~~~~~~~~~d~-~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      ++.+|+..+++++.++. .|.||||+|+..++.+++++|+.  ++++..+..|.||+++|+..++.+++++|+++|
T Consensus       132 ~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~g  207 (236)
T 1ikn_D          132 IVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT  207 (236)
T ss_dssp             HHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTS
T ss_pred             HHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcc
Confidence            34455555555555554 55555555555555555555554  445555555555555555555555555555443

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.75  E-value=3.4e-17  Score=84.85  Aligned_cols=74  Identities=20%  Similarity=0.187  Sum_probs=59.9

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++++|+..+++++.++..|.||+|+|+..++.+++++|+.  ++++..+..|.||||+|+..++.+++++|+++|
T Consensus       125 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  200 (237)
T 3b7b_A          125 DLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRD  200 (237)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred             HHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcC
Confidence            35677788888888888888888888888888888888886  677777888888888888888888888887765

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.75  E-value=2.3e-17  Score=88.02  Aligned_cols=74  Identities=20%  Similarity=0.179  Sum_probs=61.6

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++++|+..+++++.+|..|.||||+|+..|+.+++++|+.  ++++..+..|.|||++|+..++.+++++|+++|
T Consensus        73 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  148 (285)
T 3d9h_A           73 LSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHG  148 (285)
T ss_dssp             HHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCC
Confidence            35677888888888888888888888888888888888886  677778888888888888888888888888764

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.74  E-value=5.5e-18  Score=84.06  Aligned_cols=73  Identities=26%  Similarity=0.229  Sum_probs=67.1

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++++|+..+++++.+|..|.||||+|+..++.+++++|+.  ++++.+|..|.||+++|.. ++.+++++|+++|
T Consensus        89 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~g  163 (165)
T 3twr_A           89 EVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDA  163 (165)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC-
T ss_pred             HHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhcc
Confidence            46789999999999999999999999999999999999997  7888999999999999876 9999999999876

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.74  E-value=2.8e-17  Score=83.47  Aligned_cols=72  Identities=25%  Similarity=0.170  Sum_probs=42.4

Q ss_pred             HHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh---cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhC
Q psy13529          3 ILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK---RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGR   74 (75)
Q Consensus         3 ~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~---~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~   74 (75)
                      ++++|+..+++++.++..|.||+|+|+..++.+++++++.   .+.+..+..|.||||+|+..++.+++++|+++
T Consensus        54 ~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  128 (201)
T 3hra_A           54 IAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED  128 (201)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence            4455556666666666666666666666666666666652   34555555566666666666666666665543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.74  E-value=3.7e-17  Score=89.83  Aligned_cols=74  Identities=15%  Similarity=0.116  Sum_probs=68.2

Q ss_pred             hHHHHHHHhC-CCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNR-AYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~-~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++++|+..+ ++++.+|..|.||||+|+..|+.+++++|+.  ++++..|..|.|||++|+..|+.+++++|+++|
T Consensus       293 ~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~  369 (373)
T 2fo1_E          293 PIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCR  369 (373)
T ss_dssp             HHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC
T ss_pred             HHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            4678888776 8999999999999999999999999999997  788899999999999999999999999999875

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.74  E-value=2.1e-17  Score=91.18  Aligned_cols=73  Identities=25%  Similarity=0.109  Sum_probs=68.4

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGR   74 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~   74 (75)
                      .++.+|+.++++++.+|..|+||||+|+..++.+++++|+.  ++++..|..|.|||++|+..++.+++++|+..
T Consensus       249 ~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~  323 (368)
T 3jue_A          249 LACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLA  323 (368)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            46889999999999999999999999999999999999997  88899999999999999999999999999753

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.74  E-value=9.4e-18  Score=88.70  Aligned_cols=74  Identities=19%  Similarity=0.178  Sum_probs=66.0

Q ss_pred             hHHHHHHH---hCCCCCCCCCCCCChHHHHHhcCC---------HHHHHHHHh--cCCC-------CCCCCCchHHHHHH
Q psy13529          2 AILVLLVT---NRAYGPQANSSYLLLPPRAAQDGM---------LDILREATK--RDCN-------AKDEDGMTPTLWAA   60 (75)
Q Consensus         2 ~~~~~ll~---~~~~~~~~d~~~~~~l~~a~~~~~---------~~~~~~l~~--~~~~-------~~~~~~~t~l~~a~   60 (75)
                      .++++|+.   .+++++.+|..|+||||+|+..++         .+++++|+.  ++++       ..|..|+||||+|+
T Consensus       162 ~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~  241 (273)
T 2pnn_A          162 AIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAA  241 (273)
T ss_dssp             HHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             HHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHH
Confidence            46889999   899999999999999999999888         788888886  5554       48899999999999


Q ss_pred             HhCCHHHHHHHHhCC
Q psy13529         61 FQGNLEALRLLVGRG   75 (75)
Q Consensus        61 ~~~~~~~~~~L~~~g   75 (75)
                      ..|+.+++++|+++|
T Consensus       242 ~~g~~~iv~~Ll~~g  256 (273)
T 2pnn_A          242 SSGKIGVLAYILQRE  256 (273)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HhChHHHHHHHHHCC
Confidence            999999999999865

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.73  E-value=7.8e-17  Score=83.24  Aligned_cols=71  Identities=20%  Similarity=0.160  Sum_probs=35.8

Q ss_pred             HHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhC
Q psy13529          4 LVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGR   74 (75)
Q Consensus         4 ~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~   74 (75)
                      +++|+..+++++.+|..|+||||+|+..++.+++++++.  ++++..+..|.||||+|+..++.+++++|+++
T Consensus        56 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  128 (231)
T 3aji_A           56 VEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG  128 (231)
T ss_dssp             HHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            444455555555555555555555555555555555543  34444444455555555555555555555443

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.73  E-value=4.3e-17  Score=85.57  Aligned_cols=74  Identities=20%  Similarity=0.026  Sum_probs=66.4

Q ss_pred             hHHHHHHHhCCCCCCCC--------------CCCCChHHHHHhcCCHHHHHHHHh-----cCCCCCCCCCchHHHHHHHh
Q psy13529          2 AILVLLVTNRAYGPQAN--------------SSYLLLPPRAAQDGMLDILREATK-----RDCNAKDEDGMTPTLWAAFQ   62 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d--------------~~~~~~l~~a~~~~~~~~~~~l~~-----~~~~~~~~~~~t~l~~a~~~   62 (75)
                      .++++|+..+++++.++              ..|.||||+|+..|+.+++++|+.     ++++.+|..|+||||+|+..
T Consensus       107 ~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~  186 (260)
T 3jxi_A          107 HYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAI  186 (260)
T ss_dssp             HHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHH
T ss_pred             HHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHh
Confidence            46889999999999988              689999999999999999999997     56888999999999999988


Q ss_pred             CC---------HHHHHHHHhCC
Q psy13529         63 GN---------LEALRLLVGRG   75 (75)
Q Consensus        63 ~~---------~~~~~~L~~~g   75 (75)
                      ++         .+++++|+++|
T Consensus       187 ~~~~~~~~~~~~~~v~~Ll~~g  208 (260)
T 3jxi_A          187 ADNTRENTKFVTKMYDLLLIKC  208 (260)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHH
T ss_pred             ccCchhHHHHHHHHHHHHHHhC
Confidence            88         78999998753

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.73  E-value=6.3e-17  Score=83.70  Aligned_cols=74  Identities=22%  Similarity=0.069  Sum_probs=66.9

Q ss_pred             hHHHHHHHhCCCCCCCCC-------------CCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHH
Q psy13529          2 AILVLLVTNRAYGPQANS-------------SYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLE   66 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~-------------~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~   66 (75)
                      .++++|+..+++++.++.             .|.||||+|+..++.+++++|+.  ++++.+|..|+||||+|+..++.+
T Consensus        89 ~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~  168 (232)
T 2rfa_A           89 NLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKT  168 (232)
T ss_dssp             HHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHH
T ss_pred             HHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChH
Confidence            467889999999988765             79999999999999999999997  888999999999999999999999


Q ss_pred             HH----HHHHhCC
Q psy13529         67 AL----RLLVGRG   75 (75)
Q Consensus        67 ~~----~~L~~~g   75 (75)
                      ++    ++|+++|
T Consensus       169 ~~~~i~~~Ll~~g  181 (232)
T 2rfa_A          169 FACQMYNLLLSYD  181 (232)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcC
Confidence            88    8888764

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.73  E-value=2.6e-17  Score=75.26  Aligned_cols=56  Identities=36%  Similarity=0.474  Sum_probs=51.4

Q ss_pred             CCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529         20 SYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus        20 ~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      +|+||||+|+..++.+++++++.  ++++.+|..|+||||+|+..++.+++++|+++|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g   58 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG   58 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            47899999999999999999997  788999999999999999999999999999875

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.73  E-value=7.2e-17  Score=86.14  Aligned_cols=72  Identities=15%  Similarity=0.137  Sum_probs=63.9

Q ss_pred             HHHHHHhCCCCC------CCCCCCCChHHHHHhc---CCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHH
Q psy13529          4 LVLLVTNRAYGP------QANSSYLLLPPRAAQD---GMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLV   72 (75)
Q Consensus         4 ~~~ll~~~~~~~------~~d~~~~~~l~~a~~~---~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~   72 (75)
                      +..++..+.+++      ..|..|+||||+|+..   ++.+++++|+.  ++++.+|..|+||||+|+..|+.+++++|+
T Consensus       146 ~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll  225 (278)
T 1dcq_A          146 LLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL  225 (278)
T ss_dssp             HHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            456778888844      4478899999999999   89999999997  889999999999999999999999999999


Q ss_pred             hCC
Q psy13529         73 GRG   75 (75)
Q Consensus        73 ~~g   75 (75)
                      ++|
T Consensus       226 ~~g  228 (278)
T 1dcq_A          226 RGK  228 (278)
T ss_dssp             HTT
T ss_pred             HcC
Confidence            876

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.73  E-value=4.3e-17  Score=90.61  Aligned_cols=74  Identities=24%  Similarity=0.220  Sum_probs=52.1

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++++|+..+++++..+..+.||||+|+..|+.+++++|+.  ++++.++..|+||||+|+..|+.+++++|+++|
T Consensus        28 ~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  103 (437)
T 1n11_A           28 PIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENN  103 (437)
T ss_dssp             HHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCC
Confidence            35666777777777777777777777777777777777775  566666777777777777777777777776543

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.73  E-value=3.3e-18  Score=86.94  Aligned_cols=69  Identities=12%  Similarity=0.027  Sum_probs=33.5

Q ss_pred             HHHHHHhCCCCCCCCCCCC-ChHHHHHhcCC-----HHHHHHHHh---cCCCCCCCCCchHHHHHHHhCCHHHHHHHH
Q psy13529          4 LVLLVTNRAYGPQANSSYL-LLPPRAAQDGM-----LDILREATK---RDCNAKDEDGMTPTLWAAFQGNLEALRLLV   72 (75)
Q Consensus         4 ~~~ll~~~~~~~~~d~~~~-~~l~~a~~~~~-----~~~~~~l~~---~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~   72 (75)
                      +.+|+..|++++.+|..|+ ||||+|+..+.     .+++++|+.   ++++.+|..|.||||+|...++.+++++|.
T Consensus        97 v~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~  174 (186)
T 3t8k_A           97 CKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMME  174 (186)
T ss_dssp             HHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            4444555555555555554 55555544222     234444442   444555555555555555555555555544

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.73  E-value=8.8e-17  Score=82.84  Aligned_cols=74  Identities=18%  Similarity=0.136  Sum_probs=59.7

Q ss_pred             hHHHHHHHhC--CCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNR--AYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~--~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++.+|+..+  ++++.++..|.||||+|+..++.+++++++.  ++++.++..|.||||+|+..++.+++++|+++|
T Consensus        86 ~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  163 (228)
T 2dzn_A           86 EVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG  163 (228)
T ss_dssp             HHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred             HHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            3566777776  7777788888888888888888888888886  677778888888888888888888888888764

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.73  E-value=2.1e-17  Score=87.18  Aligned_cols=74  Identities=15%  Similarity=-0.050  Sum_probs=65.9

Q ss_pred             hHHHHHHHhCCC---CCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAY---GPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~---~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++++|+..+++   ++.++..|+||||+|+..|+.+++++|+.  ++++..+..|+||||+|+..++.+++++|+++|
T Consensus        23 ~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~  101 (282)
T 1oy3_D           23 PFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPR  101 (282)
T ss_dssp             HHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSC
T ss_pred             HHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccC
Confidence            467888888887   77888999999999999999999999997  788889999999999999999999999998754

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.73  E-value=7.4e-17  Score=86.92  Aligned_cols=73  Identities=22%  Similarity=0.167  Sum_probs=66.4

Q ss_pred             HHHHHHHhCCCCCC------CCCCCCChHHHHHhc---CCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHH
Q psy13529          3 ILVLLVTNRAYGPQ------ANSSYLLLPPRAAQD---GMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLL   71 (75)
Q Consensus         3 ~~~~ll~~~~~~~~------~d~~~~~~l~~a~~~---~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L   71 (75)
                      .+..++..+++++.      .+..|.||||+|+..   ++.+++++|+.  ++++..|..|+||||+|+..|+.+++++|
T Consensus       166 ~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~L  245 (301)
T 2b0o_E          166 SVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLL  245 (301)
T ss_dssp             HHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            46777888999887      688999999999997   89999999997  88999999999999999999999999999


Q ss_pred             HhCC
Q psy13529         72 VGRG   75 (75)
Q Consensus        72 ~~~g   75 (75)
                      +++|
T Consensus       246 l~~g  249 (301)
T 2b0o_E          246 LKGR  249 (301)
T ss_dssp             HHTT
T ss_pred             HHcC
Confidence            9875

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.72  E-value=4.6e-18  Score=88.56  Aligned_cols=74  Identities=19%  Similarity=0.023  Sum_probs=67.8

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCC-CCCchHHHHH--HHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKD-EDGMTPTLWA--AFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~-~~~~t~l~~a--~~~~~~~~~~~L~~~g   75 (75)
                      .++++|+..+++++.+|..|+||||+|+..|+.+++++|+.  ++++..+ ..|+|||++|  +..++.+++++|+++|
T Consensus        68 ~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~g  146 (229)
T 2vge_A           68 SIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVE  146 (229)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcC
Confidence            46889999999999999999999999999999999999997  7788876 5899999999  9999999999998754

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.72  E-value=5.9e-17  Score=85.64  Aligned_cols=74  Identities=23%  Similarity=0.097  Sum_probs=66.7

Q ss_pred             hHHHHHHHhCCCCCCCCC--------------CCCChHHHHHhcCCHHHHHHHHh-----cCCCCCCCCCchHHHHHHHh
Q psy13529          2 AILVLLVTNRAYGPQANS--------------SYLLLPPRAAQDGMLDILREATK-----RDCNAKDEDGMTPTLWAAFQ   62 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~--------------~~~~~l~~a~~~~~~~~~~~l~~-----~~~~~~~~~~~t~l~~a~~~   62 (75)
                      .++++|+..+++++.++.              .|.||||+|+..++.+++++|+.     ++++.+|..|+||||+|+..
T Consensus       115 ~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~  194 (273)
T 2pnn_A          115 TLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEV  194 (273)
T ss_dssp             HHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHH
T ss_pred             HHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHc
Confidence            468899999999999887              79999999999999999999997     56888999999999999999


Q ss_pred             CC---------HHHHHHHHhCC
Q psy13529         63 GN---------LEALRLLVGRG   75 (75)
Q Consensus        63 ~~---------~~~~~~L~~~g   75 (75)
                      ++         .+++++|+++|
T Consensus       195 ~~~~~~~~~~~~~~v~~Ll~~g  216 (273)
T 2pnn_A          195 ADNTVDNTKFVTSMYNEILILG  216 (273)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHH
T ss_pred             cCcchhHHHHHHHHHHHHHHhh
Confidence            88         78999998653

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.72  E-value=9.8e-17  Score=84.16  Aligned_cols=72  Identities=19%  Similarity=0.081  Sum_probs=67.6

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHh
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVG   73 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~   73 (75)
                      .++++|+..+++++.+|..|.||+|+|+..++.+++++|+.  ++++..|..|.||+++|+..|+.+++++|..
T Consensus       171 ~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~  244 (253)
T 1yyh_A          171 DAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDL  244 (253)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHH
Confidence            46789999999999999999999999999999999999997  7888999999999999999999999999864

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.72  E-value=5.5e-17  Score=86.20  Aligned_cols=72  Identities=25%  Similarity=0.201  Sum_probs=38.6

Q ss_pred             HHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh-----------------------------------cCCCCC
Q psy13529          4 LVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK-----------------------------------RDCNAK   48 (75)
Q Consensus         4 ~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~-----------------------------------~~~~~~   48 (75)
                      +.+|+..+++++.+|.+|+||||+|+..|+.+++++|+.                                   ++++.+
T Consensus        69 v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~  148 (269)
T 4b93_B           69 LAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKK  148 (269)
T ss_dssp             ------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCC
T ss_pred             HHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCC
Confidence            344555566666666666666666666666555555553                                   344455


Q ss_pred             CCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529         49 DEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus        49 ~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      |..|+||||+|+..|+.+++++|+++|
T Consensus       149 d~~g~TpL~~A~~~g~~~~v~~Ll~~g  175 (269)
T 4b93_B          149 DLSGNTPLIYACSGGHHELVALLLQHG  175 (269)
T ss_dssp             CTTCCCHHHHHHHTTCGGGHHHHHHTT
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHCC
Confidence            555666666666666666666665543

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.72  E-value=7.2e-17  Score=84.63  Aligned_cols=74  Identities=22%  Similarity=0.053  Sum_probs=66.3

Q ss_pred             hHHHHHHHhCCCCCCCCCC-------------CCChHHHHHhcCCHHHHHHHHh-----cCCCCCCCCCchHHHHHHH--
Q psy13529          2 AILVLLVTNRAYGPQANSS-------------YLLLPPRAAQDGMLDILREATK-----RDCNAKDEDGMTPTLWAAF--   61 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~-------------~~~~l~~a~~~~~~~~~~~l~~-----~~~~~~~~~~~t~l~~a~~--   61 (75)
                      .++++|+..+++++.++..             |.||||+|+..|+.+++++|+.     ++++.+|..|+||||+|+.  
T Consensus       104 ~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~  183 (256)
T 2etb_A          104 QCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIA  183 (256)
T ss_dssp             HHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHC
T ss_pred             HHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcc
Confidence            4688999999999998876             9999999999999999999987     4678899999999999998  


Q ss_pred             hCCHH-------HHHHHHhCC
Q psy13529         62 QGNLE-------ALRLLVGRG   75 (75)
Q Consensus        62 ~~~~~-------~~~~L~~~g   75 (75)
                      .++.+       ++++|+++|
T Consensus       184 ~~~~~~~~~~~~iv~~Ll~~g  204 (256)
T 2etb_A          184 DNSPENSALVIHMYDGLLQMG  204 (256)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCchhhHHHHHHHHHHHHcC
Confidence            88888       999998754

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.72  E-value=1.8e-16  Score=82.18  Aligned_cols=72  Identities=24%  Similarity=0.214  Sum_probs=50.0

Q ss_pred             HHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhC
Q psy13529          3 ILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGR   74 (75)
Q Consensus         3 ~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~   74 (75)
                      ++++|+..+++++..+..|.||||+|+..|+.+++++++.  ++++..+..|.||||+|+..++.+++++|+++
T Consensus        26 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~   99 (237)
T 3b7b_A           26 ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSN   99 (237)
T ss_dssp             HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Confidence            4566667777777777777777777777777777777765  55666666677777777777777777777654

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.72  E-value=1.5e-16  Score=83.79  Aligned_cols=72  Identities=22%  Similarity=0.237  Sum_probs=40.2

Q ss_pred             HHHHHHHhCCCCCCC-CCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhC
Q psy13529          3 ILVLLVTNRAYGPQA-NSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGR   74 (75)
Q Consensus         3 ~~~~ll~~~~~~~~~-d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~   74 (75)
                      +++.|+..+++++.. +..|+||||+|+..|+.+++++|+.  ++++..+..|.||||+|+..|+.+++++|+++
T Consensus        20 ~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   94 (285)
T 1wdy_A           20 LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSK   94 (285)
T ss_dssp             HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            345555555555544 4455556666655555555555554  44555555555555555555555555555544

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.72  E-value=1.5e-16  Score=87.46  Aligned_cols=74  Identities=28%  Similarity=0.276  Sum_probs=67.3

Q ss_pred             hHHHHHHHhCCCCCC--------CCCCCCChHHHHHhcCCHHHHHHHHh---cCCCCCCCCCchHHHHHHHhCCHHHHHH
Q psy13529          2 AILVLLVTNRAYGPQ--------ANSSYLLLPPRAAQDGMLDILREATK---RDCNAKDEDGMTPTLWAAFQGNLEALRL   70 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~--------~d~~~~~~l~~a~~~~~~~~~~~l~~---~~~~~~~~~~~t~l~~a~~~~~~~~~~~   70 (75)
                      .++.+|+..+++++.        .|..|.||||+|+..|+.+++++|+.   ++++..|..|.||||+|+..|+.+++++
T Consensus       252 ~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~  331 (373)
T 2fo1_E          252 ASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMY  331 (373)
T ss_dssp             HHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            467889999999876        56789999999999999999999995   7788999999999999999999999999


Q ss_pred             HHhCC
Q psy13529         71 LVGRG   75 (75)
Q Consensus        71 L~~~g   75 (75)
                      |+++|
T Consensus       332 Ll~~g  336 (373)
T 2fo1_E          332 LIQQG  336 (373)
T ss_dssp             HHHTT
T ss_pred             HHHcC
Confidence            99875

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.71  E-value=1.7e-16  Score=84.66  Aligned_cols=73  Identities=14%  Similarity=0.013  Sum_probs=57.5

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++.+|+..+++++.+|..|.||||+|+..++.+++++|+.  ++++ .+..|.||||+|+..++.+++++|+++|
T Consensus       171 ~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  245 (285)
T 3d9h_A          171 ECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFG  245 (285)
T ss_dssp             HHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT-CCBTTBCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            35677788888888888888888888888888888888886  5555 3677888888888888888888887765

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.71  E-value=4.4e-17  Score=86.94  Aligned_cols=72  Identities=19%  Similarity=0.188  Sum_probs=57.7

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++.+|+..+++++.+|  |+||||+|+..|+.+++++|+.  ++++..+..|+||||+|+..|+.+++++|+++|
T Consensus        45 ~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g  118 (285)
T 3kea_A           45 RLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKN  118 (285)
T ss_dssp             HHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHC
T ss_pred             HHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcC
Confidence            35677888888777764  7888888888888888888886  677778888888888888888888888887654

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.71  E-value=1e-16  Score=77.51  Aligned_cols=64  Identities=25%  Similarity=0.189  Sum_probs=56.8

Q ss_pred             CCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529         11 RAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus        11 ~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      |+++ .+|..|+||||+|+..++.+++++++.  ++++..|..|+||||+|+..++.+++++|+++|
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g   66 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK   66 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            3456 678899999999999999999999997  788889999999999999999999999999865

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.71  E-value=2.4e-16  Score=81.85  Aligned_cols=73  Identities=22%  Similarity=0.147  Sum_probs=54.0

Q ss_pred             HHHHHHHhCCC------CCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCC-CCchHHHHHHHhCCHHHHHHHHh
Q psy13529          3 ILVLLVTNRAY------GPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDE-DGMTPTLWAAFQGNLEALRLLVG   73 (75)
Q Consensus         3 ~~~~ll~~~~~------~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~-~~~t~l~~a~~~~~~~~~~~L~~   73 (75)
                      ++.+|+..+++      .+..+..|.||||+|+..++.+++++|+.  ++++..+. .|.||||+|+..++.+++++|++
T Consensus        93 ~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~  172 (236)
T 1ikn_D           93 SVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK  172 (236)
T ss_dssp             HHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            45666666654      34556677888888888888888888875  66777776 78888888888888888888877


Q ss_pred             CC
Q psy13529         74 RG   75 (75)
Q Consensus        74 ~g   75 (75)
                      +|
T Consensus       173 ~g  174 (236)
T 1ikn_D          173 CG  174 (236)
T ss_dssp             TT
T ss_pred             cC
Confidence            65

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.70  E-value=2.6e-17  Score=85.90  Aligned_cols=73  Identities=18%  Similarity=0.039  Sum_probs=66.6

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCc-hHHHHH--HHhCCHHHHHHHHhC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGM-TPTLWA--AFQGNLEALRLLVGR   74 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~-t~l~~a--~~~~~~~~~~~L~~~   74 (75)
                      .++++|+..+++++.+|..|+||||+|+..++.+++++|+.  ++++..+..+. ||+++|  ...|+.+++++|+++
T Consensus        84 ~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~  161 (239)
T 1ycs_B           84 EIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  161 (239)
T ss_dssp             HHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHh
Confidence            46889999999999999999999999999999999999997  78888887766 999999  788999999999865

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.70  E-value=2.9e-17  Score=83.46  Aligned_cols=74  Identities=14%  Similarity=-0.041  Sum_probs=64.6

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHh------cCCHHHHHHHHh--cCCCCCCCCCc-hHHHHHHHhC-----CHHH
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQ------DGMLDILREATK--RDCNAKDEDGM-TPTLWAAFQG-----NLEA   67 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~------~~~~~~~~~l~~--~~~~~~~~~~~-t~l~~a~~~~-----~~~~   67 (75)
                      .++.+|+..|++++.+|..|+||||+|+.      .+..+++++|+.  ++++.+|..|+ ||||+|+..+     +.++
T Consensus        56 ~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~i  135 (186)
T 3t8k_A           56 KISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPL  135 (186)
T ss_dssp             HHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHH
Confidence            57899999999999999999999999874      667899999996  89999999999 9999999844     4568


Q ss_pred             HHHHHh-CC
Q psy13529         68 LRLLVG-RG   75 (75)
Q Consensus        68 ~~~L~~-~g   75 (75)
                      +++|++ +|
T Consensus       136 v~~Ll~~~g  144 (186)
T 3t8k_A          136 YKLIFSQSG  144 (186)
T ss_dssp             HHHHHTSTT
T ss_pred             HHHHHHhcC
Confidence            899987 55

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.70  E-value=4.4e-16  Score=84.31  Aligned_cols=74  Identities=26%  Similarity=0.205  Sum_probs=64.0

Q ss_pred             hHHHHHHHhCCCCCCCCC-CCCChHHHHHhcCCHHHHHHHHh--cC---------------------------------C
Q psy13529          2 AILVLLVTNRAYGPQANS-SYLLLPPRAAQDGMLDILREATK--RD---------------------------------C   45 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~-~~~~~l~~a~~~~~~~~~~~l~~--~~---------------------------------~   45 (75)
                      .+|++|+.+|++++.++. .|+||||+|+..|+.+++++|+.  ++                                 +
T Consensus        39 ~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (337)
T 4g8k_A           39 DLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADV  118 (337)
T ss_dssp             HHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT
T ss_pred             HHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchh
Confidence            578999999999998875 58999999999999999999985  32                                 3


Q ss_pred             CCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529         46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus        46 ~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      +..|..|.||+++|+..++.+++++|+++|
T Consensus       119 ~~~d~~g~t~l~~A~~~~~~~~~~~ll~~g  148 (337)
T 4g8k_A          119 NECDFYGFTAFMEAAVYGKVKALKFLYKRG  148 (337)
T ss_dssp             TCBCTTCCBHHHHHHHTTCHHHHHHHHHTT
T ss_pred             hhhccCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            456778999999999999999999998765

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.69  E-value=8.5e-16  Score=79.63  Aligned_cols=69  Identities=25%  Similarity=0.162  Sum_probs=28.5

Q ss_pred             HHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--c----CCCCCCCCCchHHHHHHHhCCHHHHHHHHh
Q psy13529          5 VLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--R----DCNAKDEDGMTPTLWAAFQGNLEALRLLVG   73 (75)
Q Consensus         5 ~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~----~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~   73 (75)
                      ++|+..+++++.+|..|.||+|+|+..++.+++++++.  .    +++..+..|.||||+|+..++.+++++|++
T Consensus        63 ~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  137 (241)
T 1k1a_A           63 RLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLE  137 (241)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHH
Confidence            33444444444444444444444444444444444432  1    233333344444444444444444444433

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.68  E-value=5.7e-16  Score=78.12  Aligned_cols=73  Identities=21%  Similarity=0.141  Sum_probs=63.0

Q ss_pred             hHHHHHHHhCCCCCCCC-CCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHh----------------
Q psy13529          2 AILVLLVTNRAYGPQAN-SSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQ----------------   62 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d-~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~----------------   62 (75)
                      .++++|+..+++++.+| ..|+||||+|+..++.+++++|+.  ++++.+|..|.||+++|+..                
T Consensus        90 ~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~~l~~a~~~  169 (183)
T 3deo_A           90 KCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRI  169 (183)
T ss_dssp             HHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHTCCCCSHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccCcccccHHHHHHHc
Confidence            46789999999999988 889999999999999999999997  78889999999999888765                


Q ss_pred             CCHHHHHHHHhC
Q psy13529         63 GNLEALRLLVGR   74 (75)
Q Consensus        63 ~~~~~~~~L~~~   74 (75)
                      |+.+++++|.++
T Consensus       170 ~~~~i~~~L~~~  181 (183)
T 3deo_A          170 GLEKVINVLEGQ  181 (183)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHh
Confidence            566777776653

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.67  E-value=4.9e-17  Score=88.16  Aligned_cols=70  Identities=10%  Similarity=-0.060  Sum_probs=60.7

Q ss_pred             HHHHHHHhCCCCCC-CCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCC---HHHHHHHH
Q psy13529          3 ILVLLVTNRAYGPQ-ANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGN---LEALRLLV   72 (75)
Q Consensus         3 ~~~~ll~~~~~~~~-~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~---~~~~~~L~   72 (75)
                      ++.+|+..+++++. +|..|+||||+|+..|+.+++++|+.  ++++.+|..|+||||+|+..|+   .++++.|+
T Consensus       112 ~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll  187 (327)
T 1sw6_A          112 VNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALL  187 (327)
T ss_dssp             HHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHH
T ss_pred             HHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHH
Confidence            45677778899999 89999999999999999999999997  8899999999999999999988   44444444

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.67  E-value=6.2e-16  Score=81.07  Aligned_cols=72  Identities=21%  Similarity=0.139  Sum_probs=64.5

Q ss_pred             hHHHHHHHhCCCCCCCC-CCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHH----------------Hh
Q psy13529          2 AILVLLVTNRAYGPQAN-SSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAA----------------FQ   62 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d-~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~----------------~~   62 (75)
                      .++++|+..+++++.++ ..|+||||+|+..|+.+++++|+.  ++++.+|..|.||||+|+                ..
T Consensus        91 ~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~  170 (244)
T 3ui2_A           91 KCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRI  170 (244)
T ss_dssp             HHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHc
Confidence            46889999999999988 889999999999999999999997  788889999999988887                66


Q ss_pred             CCHHHHHHHHh
Q psy13529         63 GNLEALRLLVG   73 (75)
Q Consensus        63 ~~~~~~~~L~~   73 (75)
                      |+.+++++|.+
T Consensus       171 g~~~iv~~L~~  181 (244)
T 3ui2_A          171 GLEKVINVLEG  181 (244)
T ss_dssp             HHHHHHHHHHH
T ss_pred             ChHHHHHHHHH
Confidence            88889988875

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.67  E-value=7.8e-16  Score=79.50  Aligned_cols=73  Identities=14%  Similarity=0.008  Sum_probs=63.1

Q ss_pred             HHHHHHHhCCCCCCCCC-CCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          3 ILVLLVTNRAYGPQANS-SYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         3 ~~~~ll~~~~~~~~~d~-~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      ++.+|+..+++++..+. .|.||||+|+..++.+++++|+.  ++++..+..|.||+++|+..++.+++++|+++|
T Consensus       158 ~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~  233 (240)
T 3eu9_A          158 PTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEAR  233 (240)
T ss_dssp             THHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred             HHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhh
Confidence            46778888888888876 88899999999999999999986  778888888999999999999999999988754

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.67  E-value=4.9e-17  Score=83.91  Aligned_cols=74  Identities=18%  Similarity=0.032  Sum_probs=63.3

Q ss_pred             hHHHHHHHh-CCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTN-RAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~-~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++++|+.. +++++.+|..|+||||+|+..|+.+++++|+.  ++++.++..|.||+++|+..++.++++.|++.|
T Consensus       120 ~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~  196 (222)
T 3ehr_A          120 DIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTD  196 (222)
T ss_dssp             HHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC------
T ss_pred             HHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccc
Confidence            467888887 99999999999999999999999999999997  788999999999999999999999998887653

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.66  E-value=1.3e-16  Score=75.97  Aligned_cols=61  Identities=20%  Similarity=0.129  Sum_probs=55.7

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHh
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQ   62 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~   62 (75)
                      .++++|+..+++++.+|..|+||||+|+..++.+++++|+.  ++++..+..|.||+++|...
T Consensus        54 ~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  116 (123)
T 3aaa_C           54 EILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQ  116 (123)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCH
T ss_pred             HHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCH
Confidence            46788999999999999999999999999999999999997  78889999999999999543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.65  E-value=4e-15  Score=76.83  Aligned_cols=74  Identities=22%  Similarity=0.185  Sum_probs=52.2

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCC-CCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKD-EDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~-~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .+++.|+..+++++.++..|.||||+|+..++.+++++++.  .+.+..+ ..|.|||++|+..++.+++++|+++|
T Consensus        23 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g   99 (240)
T 3eu9_A           23 ERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYG   99 (240)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcC
Confidence            35667777777777777777788888888888887777775  3333333 34777777777777777777777653

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.64  E-value=4.1e-15  Score=79.21  Aligned_cols=62  Identities=34%  Similarity=0.271  Sum_probs=56.3

Q ss_pred             CCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529         14 GPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus        14 ~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      ....+..|.||||+|+..|+.+++++|+.  ++++..|..|.||||+|+..|+.+++++|+++|
T Consensus       192 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  255 (299)
T 1s70_B          192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL  255 (299)
T ss_dssp             CCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             hhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcC
Confidence            34466789999999999999999999997  788999999999999999999999999999876

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.64  E-value=6.3e-16  Score=72.82  Aligned_cols=60  Identities=28%  Similarity=0.375  Sum_probs=55.7

Q ss_pred             CCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529         16 QANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus        16 ~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .+|..|+|+||+|+..++.+++++++.  ++++..|..|.||||+|+..++.+++++|+++|
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g   65 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG   65 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            467899999999999999999999997  778889999999999999999999999998765

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.63  E-value=8.1e-16  Score=72.22  Aligned_cols=60  Identities=35%  Similarity=0.380  Sum_probs=53.6

Q ss_pred             CCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529         16 QANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus        16 ~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      ..|.+|+++||+|+..++.+++++++.  ++++..|..|+||||+|+..++.+++++|+++|
T Consensus        19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~g   80 (110)
T 2zgd_A           19 HMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG   80 (110)
T ss_dssp             ---CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             ccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            356789999999999999999999997  788889999999999999999999999999875

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.63  E-value=3.1e-16  Score=85.06  Aligned_cols=73  Identities=10%  Similarity=-0.069  Sum_probs=63.6

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCC---HHHHHHHHh---cCCCCCCCCCchHHHHHHH----hCCHHHHHHH
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGM---LDILREATK---RDCNAKDEDGMTPTLWAAF----QGNLEALRLL   71 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~---~~~~~~l~~---~~~~~~~~~~~t~l~~a~~----~~~~~~~~~L   71 (75)
                      .++++|+..+++++.+|..|+||||+|+..|+   .++++.++.   ++++..+..|+||||+|+.    .++.+++++|
T Consensus       145 ~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~L  224 (327)
T 1sw6_A          145 ELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYY  224 (327)
T ss_dssp             HHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHH
Confidence            46889999999999999999999999999988   455555654   5678889999999999998    8999999999


Q ss_pred             HhC
Q psy13529         72 VGR   74 (75)
Q Consensus        72 ~~~   74 (75)
                      ++.
T Consensus       225 l~~  227 (327)
T 1sw6_A          225 LDI  227 (327)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.52  E-value=3.7e-16  Score=86.44  Aligned_cols=52  Identities=19%  Similarity=0.264  Sum_probs=27.5

Q ss_pred             CChHHHHHhcCCHHHHHHHHh--cCCCC--CCCCCchHHHHHH-HhCCHHHHHHHHh
Q psy13529         22 LLLPPRAAQDGMLDILREATK--RDCNA--KDEDGMTPTLWAA-FQGNLEALRLLVG   73 (75)
Q Consensus        22 ~~~l~~a~~~~~~~~~~~l~~--~~~~~--~~~~~~t~l~~a~-~~~~~~~~~~L~~   73 (75)
                      .||||+|+..|+.+++++|+.  ++++.  .+..|.||||+|+ ..|+.+++++|++
T Consensus       164 ~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~  220 (376)
T 2aja_A          164 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLD  220 (376)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTT
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHh
Confidence            555555555555555555554  33222  4444555555555 5555555555554

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.42  E-value=3.9e-14  Score=78.47  Aligned_cols=73  Identities=19%  Similarity=0.113  Sum_probs=51.8

Q ss_pred             hHHHHHHHhCCCC---CCCCCCCCChHHHHHhcCCHHHHHHHHhcC-----CCCCCCCCchHHHHHHHhCCHHHHHHHHh
Q psy13529          2 AILVLLVTNRAYG---PQANSSYLLLPPRAAQDGMLDILREATKRD-----CNAKDEDGMTPTLWAAFQGNLEALRLLVG   73 (75)
Q Consensus         2 ~~~~~ll~~~~~~---~~~d~~~~~~l~~a~~~~~~~~~~~l~~~~-----~~~~~~~~~t~l~~a~~~~~~~~~~~L~~   73 (75)
                      .++++|+..++..   +..+..+.+|||+|+..|+.+++++|+..+     .+..+.+ .||||+|+..|+.+++++|++
T Consensus       106 e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~  184 (376)
T 2aja_A          106 SALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCE  184 (376)
T ss_dssp             HHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHH
Confidence            4567777776632   233456778999999999999999998732     1222233 899999999999999999988


Q ss_pred             CC
Q psy13529         74 RG   75 (75)
Q Consensus        74 ~g   75 (75)
                      +|
T Consensus       185 ~g  186 (376)
T 2aja_A          185 LA  186 (376)
T ss_dssp             SC
T ss_pred             cC
Confidence            75

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	75
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	0.003
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.002
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.002
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.001
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	6e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	7e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	8e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	5e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.001
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-04

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 9e-08
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          A+  G L I++   +R    N  +    TP   AA  G+ E  + L+   
Sbjct: 7  ASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNK 56

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 3e-05
 Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 28  AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLL 71
           AAQ G  DI+    K     N    DG TP   A   G +    +L
Sbjct: 337 AAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 382

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 7e-05
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 28  AAQDGMLDILREATKRDC--NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           AA+ G + +     +RD   NA  ++G+TP   A    NL+ ++LL+ RG
Sbjct: 139 AAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRG 188

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 8e-05
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 28 AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLV 72
          AA+ G  ++ +   +     NAK +D  TP   AA  G+   ++LL+
Sbjct: 40 AARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLL 86

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 9e-05
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 45  CNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
            NAK + G +P   AA QG+ + + LL+  G
Sbjct: 323 VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 353

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.9 bits (71), Expect = 0.003
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 53 MTPTLWAAFQGNLEALRLLVGRG 75
          +TP   A+F G+L  ++ L+ RG
Sbjct: 1  LTPLHVASFMGHLPIVKNLLQRG 23

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 1e-06
 Identities = 16/54 (29%), Positives = 21/54 (38%)

Query: 22  LLLPPRAAQDGMLDILREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           L+L       G++  L E    + N  D DG T  L A      +   LL  RG
Sbjct: 223 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG 276

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.0 bits (74), Expect = 0.002
 Identities = 9/32 (28%), Positives = 17/32 (53%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           D N + E G TP + A  + +L  ++ L+ + 
Sbjct: 211 DVNVRGERGKTPLILAVEKKHLGLVQRLLEQE 242

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.6 bits (73), Expect = 0.002
 Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 27 RAAQDGMLDILREATKR--DCNAKD-EDGMTPTLWAAFQGNLEALRL 70
          +A Q+  +D++++  +   + N ++ E G TP   A      + + L
Sbjct: 11 KAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVEL 57

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.3 bits (95), Expect = 2e-06
 Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 28  AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLL 71
           AAQ+G ++++    ++     A D    T    A    +   + + 
Sbjct: 228 AAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 40.1 bits (92), Expect = 4e-06
 Identities = 10/49 (20%), Positives = 13/49 (26%), Gaps = 1/49 (2%)

Query: 28 AAQDGMLDILREATKRDCNAKD-EDGMTPTLWAAFQGNLEALRLLVGRG 75
              G   I    T+   N  D     T   W A   + E    L+   
Sbjct: 8  TEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHE 56

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 36.6 bits (83), Expect = 8e-05
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 45  CNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
            + +DEDG TP + AA +G +E +  L+ +G
Sbjct: 214 KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG 244

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.5 bits (93), Expect = 3e-06
 Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 2/49 (4%)

Query: 29  AQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
            +     +L    K   D  A+   G TP   A  + N    RLL   G
Sbjct: 200 VEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHG 248

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.4 bits (85), Expect = 4e-05
 Identities = 8/30 (26%), Positives = 10/30 (33%)

Query: 46 NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
              EDG T    A    +   L  L+G  
Sbjct: 3  GYVTEDGDTALHLAVIHQHEPFLDFLLGFS 32

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.8 bits (73), Expect = 0.001
 Identities = 8/43 (18%), Positives = 12/43 (27%), Gaps = 5/43 (11%)

Query: 28 AAQDGMLDILR-----EATKRDCNAKDEDGMTPTLWAAFQGNL 65
          A        L       A     + +++ G T    AA  G  
Sbjct: 16 AVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEA 58

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 6e-06
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVG 73
           D + +D  G+TP   A  +G  + + +L G
Sbjct: 125 DLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 7e-06
 Identities = 7/31 (22%), Positives = 11/31 (35%)

Query: 45  CNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
              ++  G T    A   G  E + L+   G
Sbjct: 126 VGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.3 bits (90), Expect = 8e-06
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 37  LREATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           L+       NA+D +G T    AA  GN+  +  L+  G
Sbjct: 244 LKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG 282

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.2 bits (82), Expect = 1e-04
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 33  MLDILREATKRDCNAK-DEDGMTPTLWAAFQGNLEALRLLVGRG 75
            ++     T+ + N   DE G TP  W     NLE ++ LV  G
Sbjct: 87  EVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG 130

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 2e-05
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 28  AAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNLEALR 69
           A+  G+L ++R   +   D + K+    TP + A  +  ++ LR
Sbjct: 184 ASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (78), Expect = 3e-04
 Identities = 13/23 (56%), Positives = 14/23 (60%)

Query: 50 EDGMTPTLWAAFQGNLEALRLLV 72
          EDG TP   A  QGNL A+  LV
Sbjct: 1  EDGDTPLHIAVVQGNLPAVHRLV 23

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.8 bits (86), Expect = 2e-05
 Identities = 6/28 (21%), Positives = 12/28 (42%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLL 71
           +    D     P   A+ + + + +RLL
Sbjct: 181 NREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 34.0 bits (76), Expect = 5e-04
 Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)

Query: 44 DCNAK-DEDGMTPTLWAAFQGNLEALRLL 71
          + NA  D+ G T    AA     +A + L
Sbjct: 14 ELNATMDKTGETSLHLAARFARADAAKRL 42

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 3e-05
 Identities = 5/32 (15%), Positives = 9/32 (28%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           D N     G +P      + +    + L    
Sbjct: 170 DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT 201

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 5e-05
 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 3/41 (7%)

Query: 27 RAAQDGMLDILRE---ATKRDCNAKDEDGMTPTLWAAFQGN 64
            A  G L+ L+E   A K      D+D  T   WA   G+
Sbjct: 9  NLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGH 49

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.8 bits (83), Expect = 5e-05
 Identities = 5/28 (17%), Positives = 11/28 (39%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLL 71
           D + + +   T    +   GN +   +L
Sbjct: 125 DVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 37.2 bits (85), Expect = 5e-05
 Identities = 13/53 (24%), Positives = 15/53 (28%), Gaps = 5/53 (9%)

Query: 28  AAQDG---MLDILREATKRDC--NAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           AA  G    LD L      D        +       AA  G+L  L  L    
Sbjct: 97  AAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELA 149

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 33.3 bits (75), Expect = 0.001
 Identities = 11/53 (20%), Positives = 15/53 (28%), Gaps = 7/53 (13%)

Query: 27  RAAQDGMLDILREATKRDC-------NAKDEDGMTPTLWAAFQGNLEALRLLV 72
           R   + +LD +R                   D       A   GN  A  LL+
Sbjct: 285 RRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLL 337

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.0 bits (81), Expect = 1e-04
 Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 3/52 (5%)

Query: 27 RAAQDGMLDILR---EATKRDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
          +A  +     ++    +       KD+DG  P  W+      E    L+ + 
Sbjct: 6  QACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 35.9 bits (81), Expect = 1e-04
 Identities = 16/32 (50%), Positives = 17/32 (53%)

Query: 44  DCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG 75
           D N KD DG TP   AA  G  EA R+LV   
Sbjct: 224 DVNIKDYDGWTPLHAAAHWGKEEACRILVENL 255

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 35.5 bits (80), Expect = 2e-04
 Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 2/41 (4%)

Query: 27 RAAQDGMLDILREATKR--DCNAKDEDGMTPTLWAAFQGNL 65
           A   G  + +    +R  D N  + DG+T    A    N+
Sbjct: 46 AACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNV 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	75
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.87
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.86
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.82
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.82
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.81
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.79
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.78
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.77
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.74
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.74
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.73
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.72
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.71
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.71
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.68
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.67
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.66
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.65
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.65
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.63
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.63
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.62
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.62
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.61
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.61
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.6
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.59
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.59
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.59
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.48
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.43
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.27

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.1e-23  Score=98.53  Aligned_cols=74  Identities=23%  Similarity=0.262  Sum_probs=69.9

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++++|+..+++++.+|..|+||||+|+..++.+++++++.  ++.+..|..|+||||+|+..|+.+++++|+++|
T Consensus        15 ~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g   90 (130)
T d1ycsb1          15 DLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG   90 (130)
T ss_dssp             HHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHHHHHHHHcC
Confidence            46889999999999999999999999999999999999997  788999999999999999999999999999876

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=2.3e-22  Score=94.88  Aligned_cols=74  Identities=26%  Similarity=0.261  Sum_probs=69.8

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .+++.|+..+++++.+|..|+||+|+|+..++.+++++++.  ++++.+|..|+||||+|+..++.+++++|+++|
T Consensus        16 ~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~~v~~Ll~~G   91 (118)
T d1myoa_          16 DEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKG   91 (118)
T ss_dssp             HHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCHHHHHHHTTC
T ss_pred             HHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchhhhhhhhccc
Confidence            46889999999999999999999999999999999999997  788999999999999999999999999999876

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=1.5e-21  Score=95.70  Aligned_cols=73  Identities=16%  Similarity=0.054  Sum_probs=68.2

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGR   74 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~   74 (75)
                      .++.+|+.++++++.+|..|+||||+|+..|+.+++++|+.  ++++.+|..|.||||+|+..|+.+++++|++.
T Consensus        62 ~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~  136 (154)
T d1dcqa1          62 HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQA  136 (154)
T ss_dssp             HHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCChhhhhhhhccccccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            46788999999999999999999999999999999999997  78899999999999999999999999999763

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=8.8e-20  Score=95.17  Aligned_cols=73  Identities=23%  Similarity=0.140  Sum_probs=68.5

Q ss_pred             HHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh---cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          3 ILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK---RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         3 ~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~---~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      +++.|+..+++++.+|..|.||||+|+..++.+++++++.   ++++..|.+|.||||+|+..++.+++++|+++|
T Consensus       201 i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~G  276 (285)
T d1wdya_         201 ITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG  276 (285)
T ss_dssp             HHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            5778899999999999999999999999999999999985   688999999999999999999999999999886

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=9e-20  Score=86.57  Aligned_cols=73  Identities=25%  Similarity=0.227  Sum_probs=65.1

Q ss_pred             hHHHHHHHhCCCCCCCCCCCC-ChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhC
Q psy13529          2 AILVLLVTNRAYGPQANSSYL-LLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGR   74 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~-~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~   74 (75)
                      .++++|+..+++++.++..+. +|||+|+..|+.+++++|+.  ++++.+|..|+||+|+|+..|+.+++++|++.
T Consensus        49 ~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Llsa  124 (125)
T d1bi7b_          49 RVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA  124 (125)
T ss_dssp             HHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            467889999999999888765 69999999999999999996  78889999999999999999999999999764

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.9e-19  Score=87.14  Aligned_cols=73  Identities=23%  Similarity=0.261  Sum_probs=67.3

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh-cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK-RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGR   74 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~   74 (75)
                      .++..++..+++++.+|..|++|||+|+..|+.+++++|+. ++++.+|..|+|||++|+..|+.+++++|+++
T Consensus        82 ~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          82 DTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccccccccccccCCCCeeeccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            35677888899999999999999999999999999998886 88899999999999999999999999999876

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=1.3e-18  Score=84.29  Aligned_cols=69  Identities=14%  Similarity=0.076  Sum_probs=64.0

Q ss_pred             HHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHH
Q psy13529          3 ILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLL   71 (75)
Q Consensus         3 ~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L   71 (75)
                      .+..++..+++.+.+|..|+||||+|+..|+.+++++++.  ++++.+|..|.||+++|+..|+.+++++|
T Consensus        82 ~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          82 IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            4567788899999999999999999999999999999997  78899999999999999999999999976

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.78  E-value=2.2e-18  Score=86.77  Aligned_cols=69  Identities=16%  Similarity=0.096  Sum_probs=63.7

Q ss_pred             HHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHH
Q psy13529          3 ILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLL   71 (75)
Q Consensus         3 ~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L   71 (75)
                      ++..++..+.+++..|..|.||||+|+..|+.++++.|+.  ++++.+|..|+||||+|+..|+.++|++|
T Consensus       138 ~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         138 AVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeeeeccccccccccccccccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            4567788888999999999999999999999999999997  78889999999999999999999999986

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=3.6e-18  Score=88.08  Aligned_cols=74  Identities=23%  Similarity=0.092  Sum_probs=67.0

Q ss_pred             hHHHHHHHhCCCCCC-CCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQ-ANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~-~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++++|+..+++.+. ++..|.||||+|+..++.+++++|+.  ++++.+|..|.||||+|+..++.+++++|+++|
T Consensus       172 ~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~G  248 (255)
T d1oy3d_         172 EMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHG  248 (255)
T ss_dssp             HHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTT
T ss_pred             ccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            357888898888876 45789999999999999999999997  789999999999999999999999999999987

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.8e-18  Score=92.34  Aligned_cols=71  Identities=24%  Similarity=0.193  Sum_probs=65.7

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHH
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLV   72 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~   72 (75)
                      .++..++..+++++.+|..|.||||+|+..|+.+++++|+.  ++++.+|.+|.||||+|+..|+.++|++|.
T Consensus       311 ~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~  383 (408)
T d1n11a_         311 KLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK  383 (408)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred             eeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            35678888999999999999999999999999999999996  889999999999999999999999999773

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=3.3e-18  Score=81.07  Aligned_cols=73  Identities=21%  Similarity=0.073  Sum_probs=65.2

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCc-hHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGM-TPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~-t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      +++++|+..+++++.++..|.+++|+|+ .|+.+++++|+.  ++++.++..+. ||||+|+..|+.+++++|+++|
T Consensus        17 ~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g   92 (125)
T d1bi7b_          17 EEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAG   92 (125)
T ss_dssp             HHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5688999999999999999999999764 799999999997  78888888765 6999999999999999999865

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=4e-17  Score=79.83  Aligned_cols=72  Identities=15%  Similarity=0.137  Sum_probs=60.7

Q ss_pred             HHHHHHhCCCCCCC------CCCCCChHHHHHhc---CCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHH
Q psy13529          4 LVLLVTNRAYGPQA------NSSYLLLPPRAAQD---GMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLV   72 (75)
Q Consensus         4 ~~~ll~~~~~~~~~------d~~~~~~l~~a~~~---~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~   72 (75)
                      +..++..+.+.+.+      +..|+||||+|+..   +..+++++|+.  ++++.+|..|+||||+|+..|+.+++++|+
T Consensus        22 l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll  101 (154)
T d1dcqa1          22 LLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL  101 (154)
T ss_dssp             HHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccccccccccccccccc
Confidence            34556667765543      67789999999974   67899999986  889999999999999999999999999999


Q ss_pred             hCC
Q psy13529         73 GRG   75 (75)
Q Consensus        73 ~~g   75 (75)
                      ++|
T Consensus       102 ~~g  104 (154)
T d1dcqa1         102 RGK  104 (154)
T ss_dssp             HTT
T ss_pred             ccC
Confidence            876

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2e-17  Score=89.45  Aligned_cols=73  Identities=25%  Similarity=0.221  Sum_probs=68.1

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGR   74 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~   74 (75)
                      .+++.|+.+|++++..|..|+||||+|+..|+.+++++|+.  ++++.++..|.||+++|+..|+.+++++|+..
T Consensus        14 ~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~   88 (408)
T d1n11a_          14 PIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLEN   88 (408)
T ss_dssp             HHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            46889999999999999999999999999999999999996  88899999999999999999999999998753

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=5.7e-17  Score=82.70  Aligned_cols=73  Identities=27%  Similarity=0.312  Sum_probs=49.3

Q ss_pred             HHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          3 ILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         3 ~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      ++++|+..+++++.++..|.+|+|+|+..++..+++.+..  .+++..|..|+||||+|+..|+.+++++|+++|
T Consensus       118 ~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~G  192 (223)
T d1uoha_         118 IAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQG  192 (223)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHHHHHHHCC
Confidence            4556666666666666666666666666666666666654  556667777777777777777777777777654

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.72  E-value=5.1e-17  Score=84.31  Aligned_cols=68  Identities=12%  Similarity=0.052  Sum_probs=62.4

Q ss_pred             HHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhC
Q psy13529          7 LVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGR   74 (75)
Q Consensus         7 ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~   74 (75)
                      +...+.+.+.+|..|+||||+|+..|+.+++++|+.  ++++.+|..|.||||+|+..|+.+++++|.++
T Consensus       207 l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         207 VGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC  276 (277)
T ss_dssp             HHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             cccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            445677888899999999999999999999999997  88999999999999999999999999999865

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.71  E-value=3.5e-19  Score=96.07  Aligned_cols=71  Identities=20%  Similarity=0.129  Sum_probs=58.8

Q ss_pred             HHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCC--CCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          5 VLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKD--EDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         5 ~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~--~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .+|+..+++++.+|..|+||||+|+..|+.+++++|+.  ++.+..+  ..|+||||+|+..|+.+++++|++.|
T Consensus       110 ~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~  184 (346)
T d2ajaa1         110 CLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELA  184 (346)
T ss_dssp             TTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSC
T ss_pred             HHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcC
Confidence            44788899999999999999999999999999999997  5555544  45899999999999999999999765

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.6e-16  Score=77.00  Aligned_cols=73  Identities=22%  Similarity=0.206  Sum_probs=66.5

Q ss_pred             HHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh---cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          3 ILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK---RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         3 ~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~---~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .+..++..+.+.+..|..+.+++++|+..++.++++.++.   .+.+.+|..|+||||+|+..++.+++++|+++|
T Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          81 TLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            3567788888999999999999999999999999999986   467889999999999999999999999999987

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.4e-16  Score=79.80  Aligned_cols=56  Identities=21%  Similarity=0.139  Sum_probs=47.1

Q ss_pred             CCCChHHHHHhcCCHHHHHHHHh------cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529         20 SYLLLPPRAAQDGMLDILREATK------RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus        20 ~~~~~l~~a~~~~~~~~~~~l~~------~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      +|+||||+|+..|+.++++.++.      ++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~g   63 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG   63 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccc
Confidence            58899999999999888887763      567888888999999999999999998888764

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=1.1e-16  Score=82.40  Aligned_cols=73  Identities=15%  Similarity=-0.047  Sum_probs=59.1

Q ss_pred             hHHHHHHHhCCC---CCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhC
Q psy13529          2 AILVLLVTNRAY---GPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGR   74 (75)
Q Consensus         2 ~~~~~ll~~~~~---~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~   74 (75)
                      .++.+|+..+++   ++.++..|.||||+|+..|+.++++.|+.  ++++..|..|.|||++|+..++.+++++|++.
T Consensus        23 ~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~  100 (255)
T d1oy3d_          23 PFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQP  100 (255)
T ss_dssp             HHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSS
T ss_pred             HHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhhhccCchHHHHHHHhh
Confidence            356777777776   45677888889999999998888888886  67888888888999998888888888887653

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=4.7e-16  Score=78.99  Aligned_cols=71  Identities=27%  Similarity=0.264  Sum_probs=59.5

Q ss_pred             HHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh---cCCCCCCCCCchHHHHHHHhCCHHHHHHHHh
Q psy13529          3 ILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK---RDCNAKDEDGMTPTLWAAFQGNLEALRLLVG   73 (75)
Q Consensus         3 ~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~---~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~   73 (75)
                      ++..++..+.+.+.+|..|+||+|+|+..++.++++.|+.   .+++.+|..|+||||+|+..++.+++++|++
T Consensus       120 ~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~  193 (229)
T d1ixva_         120 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE  193 (229)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             hhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHH
Confidence            4566777888888888888999999999999988888886   4567788889999999999999999998875

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.66  E-value=1.3e-15  Score=79.63  Aligned_cols=74  Identities=24%  Similarity=0.244  Sum_probs=66.5

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++++|+.+|++++.+|..|.||||+|+..|+.+++++|+.  .+....+..+.+|+++++..++.++++.|+++|
T Consensus        54 ~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~  129 (291)
T d1s70b_          54 EEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQG  129 (291)
T ss_dssp             HHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccccchhhcccccC
Confidence            36788999999999999999999999999999999999997  566677888999999999999999999998764

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.6e-15  Score=77.26  Aligned_cols=74  Identities=23%  Similarity=0.122  Sum_probs=66.9

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++.+|+..+++++.+|..|.||||+|+..++.+++++|+.  ++++..+..|.||+|+++..++.+++++|.+.|
T Consensus        84 ~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~  159 (223)
T d1uoha_          84 EIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYK  159 (223)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             chhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhcccc
Confidence            46788899999999999999999999999999999999986  778888999999999999999999999987654

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.65  E-value=6.9e-16  Score=79.98  Aligned_cols=69  Identities=9%  Similarity=-0.083  Sum_probs=63.0

Q ss_pred             HHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHh
Q psy13529          5 VLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVG   73 (75)
Q Consensus         5 ~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~   73 (75)
                      ..++..|++++.+|..|+||||+|+..|+.+++++|+.  ++++.++..|.||+++|...++.+++..+..
T Consensus        58 ~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~  128 (277)
T d2fo1e1          58 KECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLN  128 (277)
T ss_dssp             HHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTT
T ss_pred             hHHHHcCCCccccCCCCCeeeccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhh
Confidence            45578899999999999999999999999999999997  8889999999999999999999999887753

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.7e-16  Score=73.97  Aligned_cols=73  Identities=18%  Similarity=0.017  Sum_probs=62.1

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCC-CCchHHHHH--HHhCCHHHHHHHHhC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDE-DGMTPTLWA--AFQGNLEALRLLVGR   74 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~-~~~t~l~~a--~~~~~~~~~~~L~~~   74 (75)
                      .++++++..+++++.+|..|+||||+|+..|+.+++++|+.  ++++..+. .+.||++.+  ...|+.+++++|++.
T Consensus        48 ~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          48 EIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             cccccccccccccccccccCcccccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            35788999999999999999999999999999999999997  67776654 478877664  678899999999753

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=3.1e-16  Score=79.67  Aligned_cols=70  Identities=11%  Similarity=-0.011  Sum_probs=60.9

Q ss_pred             HHHHHHHhC-CCCCCCCCCCCChHHHHHhcCCHHHHHHHHh---cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          3 ILVLLVTNR-AYGPQANSSYLLLPPRAAQDGMLDILREATK---RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         3 ~~~~ll~~~-~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~---~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      ++..|+..+ .+++.+|.+|+||||+|+..++.+++++|+.   ++++.+|..|+|||++|+.   .+++++|+++|
T Consensus       153 ~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g  226 (229)
T d1ixva_         153 LIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNV  226 (229)
T ss_dssp             HHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC---HHHHHHHHHHC
T ss_pred             ccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh---HHHHHHHHHcC
Confidence            456777765 5778899999999999999999999999984   6899999999999999974   58999999876

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=2.1e-17  Score=77.64  Aligned_cols=60  Identities=18%  Similarity=0.121  Sum_probs=55.0

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHH
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAF   61 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~   61 (75)
                      .++.+++..+++++.+|..|+||||+|+..++.+++++|+.  ++++.+|..|.|||++|..
T Consensus        49 ~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          49 EILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDN  110 (118)
T ss_dssp             THHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTCSS
T ss_pred             ccccccccccceeeecccccccchhhhhhcCchhhhhhhhcccccceeeCCCCCCHHHHHhH
Confidence            45788899999999999999999999999999999999997  7899999999999998843

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=6.7e-15  Score=70.94  Aligned_cols=73  Identities=27%  Similarity=0.205  Sum_probs=60.4

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh-----------------------------------cCCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK-----------------------------------RDCN   46 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~-----------------------------------~~~~   46 (75)
                      .++++|+.++++.+ .|..|+||||+|+..++.+.+..++.                                   ++.+
T Consensus        16 ~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   94 (153)
T d1awcb_          16 DEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVN   94 (153)
T ss_dssp             HHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT
T ss_pred             HHHHHHHHcCCCcc-cccCCCccccccccccccccccccccccccccccccccccccccccccccceeeecccccCCccc
Confidence            46889999998776 68899999999999888876655542                                   2334


Q ss_pred             CCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529         47 AKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus        47 ~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++..|+||||+|+..|+.+++++|+++|
T Consensus        95 ~~~~~g~T~L~~A~~~g~~~iv~~ll~~g  123 (153)
T d1awcb_          95 AKDMLKMTALHWATEHNHQEVVELLIKYG  123 (153)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cccccCchHHHhhhhcchhheeeeccccc
Confidence            67888999999999999999999999876

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.62  E-value=6.8e-15  Score=73.79  Aligned_cols=72  Identities=24%  Similarity=0.131  Sum_probs=66.0

Q ss_pred             HHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          4 LVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         4 ~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      ...|...+++++.++..|+|++++++..+...+++.++.  .+++..|..|.||||+|+..|+.+++++|+++|
T Consensus       106 ~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g  179 (209)
T d1ot8a_         106 VEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNF  179 (209)
T ss_dssp             HHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             hhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHHHHHCC
Confidence            456778889999999999999999999999999998886  778889999999999999999999999999876

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.7e-15  Score=72.57  Aligned_cols=73  Identities=22%  Similarity=0.091  Sum_probs=61.7

Q ss_pred             hHHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529          2 AILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++++|+.++++++.+|..|+||||+|+ .++.+++++++.  ++++..+..+.++++.+...++.+.++.|++++
T Consensus        15 ~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~   89 (156)
T d1ihba_          15 EQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQ   89 (156)
T ss_dssp             HHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccccccccccc
Confidence            4678889999999999999999999875 688999998886  677778888888888888888888888887653

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.61  E-value=8.9e-15  Score=76.39  Aligned_cols=65  Identities=32%  Similarity=0.250  Sum_probs=46.2

Q ss_pred             CCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529         11 RAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus        11 ~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      ..+....+..|.||+|.|+..++.++++.|+.  ++++.++..|+||||+|+..|+.+++++|+++|
T Consensus       189 ~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~G  255 (291)
T d1s70b_         189 HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL  255 (291)
T ss_dssp             CCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             ccccccccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            33444556667777777777777777777775  566677777777777777777777777777665

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=6.3e-16  Score=78.53  Aligned_cols=70  Identities=20%  Similarity=0.073  Sum_probs=60.3

Q ss_pred             HHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhC
Q psy13529          5 VLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGR   74 (75)
Q Consensus         5 ~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~   74 (75)
                      ..+..++++++.+|..|+||||+|+..++.+++++++.  ++++..+..|.||+++++..++.++++.|+..
T Consensus        23 ~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~   94 (221)
T d1iknd_          23 RQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQS   94 (221)
T ss_dssp             C-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHS
T ss_pred             HHHHhCCCCcccCCCCCCccccccccccccccccccccccccccccccccccccccccccccccccchhhhh
Confidence            45667788999999999999999999999999999986  78888999999999999999999999998765

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.3e-14  Score=69.49  Aligned_cols=71  Identities=25%  Similarity=0.287  Sum_probs=55.3

Q ss_pred             HHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHh
Q psy13529          3 ILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVG   73 (75)
Q Consensus         3 ~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~   73 (75)
                      ++..|+..+.+++..+..+.+|++.++..++.++++.++.  .+++.+|..|.||||+|+..|+.+++++|++
T Consensus        50 ~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~~  122 (156)
T d1bd8a_          50 IALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA  122 (156)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccCCCCeeeccccccccccccccccc
Confidence            4566677777777777777778888888888887777775  5677778888888888888888888888764

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.3e-15  Score=76.44  Aligned_cols=72  Identities=18%  Similarity=-0.006  Sum_probs=62.8

Q ss_pred             HHHHHHHhCCCCCCCC-CCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhC
Q psy13529          3 ILVLLVTNRAYGPQAN-SSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGR   74 (75)
Q Consensus         3 ~~~~ll~~~~~~~~~d-~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~   74 (75)
                      .+.+++..+...+..+ ..|.||+|+|+..|+.+++++|+.  ++++.++..|.||+++|+..++.+++++|.+.
T Consensus       126 ~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~  200 (221)
T d1iknd_         126 IVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL  200 (221)
T ss_dssp             HHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTT
T ss_pred             heeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            4567777888877654 579999999999999999999996  88999999999999999999999999998764

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.3e-16  Score=78.96  Aligned_cols=67  Identities=22%  Similarity=0.219  Sum_probs=56.2

Q ss_pred             HHHHHHHhCCCCCCCCCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHH
Q psy13529          3 ILVLLVTNRAYGPQANSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALR   69 (75)
Q Consensus         3 ~~~~ll~~~~~~~~~d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~   69 (75)
                      ++..++..+...+.+|..|.+|+|+|+..|+.+++++|++  ++++.+|..|.||||+|+..|+.+++|
T Consensus       159 ~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         159 MVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             hhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            3556677788888888889999999999999999988886  778888888999999998888888774

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=1.2e-14  Score=76.81  Aligned_cols=31  Identities=35%  Similarity=0.365  Sum_probs=20.9

Q ss_pred             CCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529         45 CNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus        45 ~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      +|.+|..|+||||+|+..|+.+++++|+++|
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~G  282 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISIVDALLDYG  282 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTT
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            3555666777777777777777777776654

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.48  E-value=1.3e-13  Score=72.87  Aligned_cols=54  Identities=11%  Similarity=-0.089  Sum_probs=47.7

Q ss_pred             CCCCCCC-CCCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCC
Q psy13529         11 RAYGPQA-NSSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGN   64 (75)
Q Consensus        11 ~~~~~~~-d~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~   64 (75)
                      +.+++.+ |..|+||||+|+..|+.++++.|+.  ++++.+|..|+||||.|+..++
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~  152 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVN  152 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSH
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhccc
Confidence            4466665 8899999999999999999999997  8899999999999999997654

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.43  E-value=1.6e-14  Score=77.75  Aligned_cols=60  Identities=17%  Similarity=0.058  Sum_probs=49.7

Q ss_pred             CCCCCCCChHHHHHhcCCHHHHHHH---Hh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC
Q psy13529         16 QANSSYLLLPPRAAQDGMLDILREA---TK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVGRG   75 (75)
Q Consensus        16 ~~d~~~~~~l~~a~~~~~~~~~~~l---~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~~g   75 (75)
                      .++..|.|+|++|+..|+.++++++   +.  ++++..+..|+||||+|+..|+.+++++|+++|
T Consensus        85 ~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g  149 (346)
T d2ajaa1          85 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELA  149 (346)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSC
T ss_pred             hccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            3456789999999999999888764   33  778899999999999999999999999999875

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=7.8e-11  Score=60.90  Aligned_cols=72  Identities=22%  Similarity=0.224  Sum_probs=55.1

Q ss_pred             hHHHHHHHhCCCCCCCC-CCCCChHHHHHhcCCHHHHHHHHh--cCCCCCCCCCchHHHHHHHhCCHHHHHHHHh
Q psy13529          2 AILVLLVTNRAYGPQAN-SSYLLLPPRAAQDGMLDILREATK--RDCNAKDEDGMTPTLWAAFQGNLEALRLLVG   73 (75)
Q Consensus         2 ~~~~~ll~~~~~~~~~d-~~~~~~l~~a~~~~~~~~~~~l~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~L~~   73 (75)
                      +++++|+.+|++++.++ ..|+||||+|+..|+.+++++++.  ......+..+.+|.+.+...+..+.....++
T Consensus        19 e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (285)
T d1wdya_          19 DLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLS   93 (285)
T ss_dssp             HHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchhhh
Confidence            46788888888888765 468899999999999999888876  4555566677778888777777777766554