Psyllid ID: psy13542

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------
Protein Sequence
MDYVGKNQNTYDGSENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIELTNLTSIQQDTLFQIPTEI
Secondary Structure (PSIPRED)
ccHHHHHHHHHcccccHHHccccccccccccccccEEEEcccccHHHHHHHHHHccccccccccccEEccccEEEEEEcccccEEEEEccccEEEEcEEEEEEEHHHHHcccEEEcccccHHHHHHHHHccccEEEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHEccccccccHHHccccccccEEEccccccEccccccHHHHHHHHHHHcccccccccccEEEEccEEEEEEEccccEEEEEEccccEEEEcEEEEcccHHHHcccccEEEccccHHHHHHHHHcccccEcEEEEEEccccc
Coil and Loop (DISEMBL)
mdyvgknqntydgsenwfetsargldsftdlegcfgvvwkkggyGNVFKLLMKqmpgqtpidLSKKLLLKKEVTkinwedpkgvvvtcadgtqysadRILITVSLGVLksnlitfvpplppkkltAIELTNLTSIQQDTLFQIPTEI
Flexible Loop (DISEMBL)
mdyvgknqntydgsenWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVtkinwedpkgvvVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIELTNLTSIQQDTLFQIPTEI
Low Complexity Region (SEG)
MDYVGKNQNTYDGSENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIELTNLTSIQQDTLFQIPTEI
Disordered region (IsUnstruct)
***************NWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIELTNLTSIQQDTLF******
Disordered Region (DISOPRED)
MDYVGKNQNTYDGSENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIELTNLTSIQQDTLFQIPTE*
Disordered Region (DISEMBL)
********NTYDGSENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIELTNLTSIQQDTLFQIPTEI
Disordered Region (DISPRO)
MDYVGKNQNTYDGSENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIELTNLTSIQQDTLFQIPT**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDYVGKNQNTYDGSENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIELTNLTSIQQDTLFQIPTEI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	147	2.2.26 [Sep-21-2011]
O64411	500	Polyamine oxidase OS=Zea	N/A	N/A	0.414	0.122	0.467	3e-07
Q8H191	497	Probable polyamine oxidas	yes	N/A	0.687	0.203	0.330	2e-06
Q8NB78	822	Lysine-specific histone d	yes	N/A	0.394	0.070	0.457	1e-05
Q9FNA2	472	Polyamine oxidase 1 OS=Ar	no	N/A	0.442	0.137	0.378	2e-05
Q9SU79	533	Probable polyamine oxidas	no	N/A	0.523	0.144	0.404	2e-05
Q6QHF9	649	Peroxisomal N(1)-acetyl-s	no	N/A	0.530	0.120	0.312	4e-05
O96570	544	Protein anon-37Cs OS=Dros	N/A	N/A	0.285	0.077	0.581	4e-05
Q9LYT1	488	Polyamine oxidase 3 OS=Ar	no	N/A	0.680	0.204	0.364	5e-05
Q6YYZ1	763	Lysine-specific histone d	no	N/A	0.408	0.078	0.460	7e-05
Q8CIG3	826	Lysine-specific histone d	yes	N/A	0.394	0.070	0.423	7e-05

>sp|O64411|PAO_MAIZE Polyamine oxidase OS=Zea mays GN=PAO PE=1 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 1/62 (1%)

Query: 66  KLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLT 125
           +L L K V +I +  P GV V   D + YSAD ++++ SLGVL+S+LI F P LP  K+ 
Sbjct: 258 RLQLNKVVREIKYS-PGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVR 316

Query: 126 AI 127
           AI
Sbjct: 317 AI 318

Catalyzes the oxidation of the secondary amino group of polyamines (spermine, spermidine and their acetyl derivatives). Plays an important role in the regulation of polyamine intracellular concentration.
Zea mays (taxid: 4577)
EC: 1EC: .EC: 5EC: .EC: 3EC: .EC: 1EC: 5

>sp|Q8H191|PAO4_ARATH Probable polyamine oxidase 4 OS=Arabidopsis thaliana GN=PAO4 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/118 (33%), Positives = 55/118 (46%), Gaps = 17/118 (14%)

Query: 15  ENWFETSA-----RGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLL 69
           E WF   A     +  D    L G  G++ +  GY  V + + K +           + L
Sbjct: 196 EAWFAVDANLISLKCWDQDECLSGGHGLMVQ--GYEPVIRTIAKDL----------DIRL 243

Query: 70  KKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAI 127
              VTK+       V+V    GT + AD ++ITV +GVLK+NLI F P LP  K +AI
Sbjct: 244 NHRVTKVVRTSNNKVIVAVEGGTNFVADAVIITVPIGVLKANLIQFEPELPQWKTSAI 301

Flavoenzyme that catalyzes the oxidation of the secondary amino group of spermine. No activity detected when spermidine, putrescine or N(1)-acetylspermine are used as substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q8NB78|KDM1B_HUMAN Lysine-specific histone demethylase 1B OS=Homo sapiens GN=KDM1B PE=1 SV=3

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 69  LKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAI 127
           LK  V  I++   + V VT  DGT YSA ++L+TV L +L+   I F PPL  KK+ AI
Sbjct: 594 LKSPVQCIDYSGDE-VQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAI 651

Histone demethylase that demethylates 'Lys-4' of histone H3, a specific tag for epigenetic transcriptional activation, thereby acting as a corepressor. Required for de novo DNA methylation of a subset of imprinted genes during oogenesis. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Demethylates both mono- and di-methylated 'Lys-4' of histone H3. Has no effect on tri-methylated 'Lys-4', mono-, di- or tri-methylated 'Lys-9', mono-, di- or tri-methylated 'Lys-27', mono-, di- or tri-methylated 'Lys-36' of histone H3, or on mono-, di- or tri-methylated 'Lys-20' of histone H4.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q9FNA2|PAO1_ARATH Polyamine oxidase 1 OS=Arabidopsis thaliana GN=PAO1 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 63  LSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPK 122
           L  +L L + V ++  +   GVVV   DG+ Y A+ ++++ S+GVL+S+L++F P LP  
Sbjct: 203 LDYRLKLNQVVREVQ-QSRNGVVVKTEDGSVYEANYVIVSASIGVLQSDLLSFQPLLPRW 261

Query: 123 KLTAIE 128
           K  AI+
Sbjct: 262 KTEAIQ 267

Flavoenzyme that catalyzes the oxidation of the secondary amino group of spermine, norspermine and N(1)-acetylspermine. Substrate preference is norspermine > spermine > N(1)-acetylspermine. No activity detected when putrescine, spermidine or N(1)-acetylspermidine are used as substrates. Plays an important role in the regulation of polyamine intracellular concentration.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q9SU79|PAO5_ARATH Probable polyamine oxidase 5 OS=Arabidopsis thaliana GN=PAO5 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 12/89 (13%)

Query: 43  GYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILIT 102
           GY +V   L   +P Q  I L++K      VTKI W+  + V +  +DG+   AD +++T
Sbjct: 239 GYLSVIHHLASVLP-QGVIQLNRK------VTKIEWQSNE-VKLHFSDGSVVFADHVIVT 290

Query: 103 VSLGVLKSNLIT----FVPPLPPKKLTAI 127
           VSLGVLK+ + T    F PPLP  K  AI
Sbjct: 291 VSLGVLKAGIETDAELFSPPLPDFKSDAI 319

Flavoenzyme that catalyzes the oxidation of the secondary amino group of polyamines.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 5

EC: .

EC: 3

EC: .

EC: -

>sp|Q6QHF9|PAOX_HUMAN Peroxisomal N(1)-acetyl-spermine/spermidine oxidase OS=Homo sapiens GN=PAOX PE=1 SV=3

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 18/96 (18%)

Query: 43  GYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWE----------DPKGVVVTCADGT 92
           GY  +   +M  +P  T       ++ +K V  I+W           +   V V C DG 
Sbjct: 362 GYQGLTNCMMAALPEDT-------VVFEKPVKTIHWNGSFQEAAFPGETFPVSVECEDGD 414

Query: 93  QYSADRILITVSLGVLKSNLITFV-PPLPPKKLTAI 127
           ++ A  +++TV LG L+ +L TF  PPLP +K  AI
Sbjct: 415 RFPAHHVIVTVPLGFLREHLDTFFDPPLPAEKAEAI 450

Flavoenzyme which catalyzes the oxidation of N(1)-acetylspermine to spermidine and is thus involved in the polyamine back-conversion. Can also oxidize N(1)-acetylspermidine to putrescine. Substrate specificity: N(1)-acetylspermine = N(1)-acetylspermidine > N(1),N(12)-diacylspermine >> spermine. Does not oxidize spermidine. Plays an important role in the regulation of polyamine intracellular concentration and has the potential to act as a determinant of cellular sensitivity to the antitumor polyamine analogs.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: 3

>sp|O96570|A37C_DROLE Protein anon-37Cs OS=Drosophila lebanonensis GN=anon-37Cs PE=3 SV=1

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 30/43 (69%), Gaps = 1/43 (2%)

Query: 86  VTCADGTQYSADRILITVSLGVLKS-NLITFVPPLPPKKLTAI 127
           V C DGT YSAD I+ T+ LGVLK+ + I F P LP +KL AI
Sbjct: 311 VACLDGTLYSADHIICTLPLGVLKNFSAILFKPALPLEKLQAI 353

Has a non-vital function.

Drosophila lebanonensis (taxid: 7225)

>sp|Q9LYT1|PAO3_ARATH Polyamine oxidase 3 OS=Arabidopsis thaliana GN=PAO3 PE=1 SV=1

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 43/118 (36%), Positives = 55/118 (46%), Gaps = 18/118 (15%)

Query: 15  ENWF----ET-SARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLL 69
           E WF    ET SA+  D    L G  G++ +  GY  V   L K +           + L
Sbjct: 196 EGWFAADAETISAKCWDQEELLPGGHGLMVR--GYRPVINTLSKGL----------DIRL 243

Query: 70  KKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAI 127
              +TKI+     GV VT   G  + AD  +I + LGVLKS +ITF P LP  K  AI
Sbjct: 244 SHRITKIS-RRYSGVKVTTEKGDTFVADAAVIALPLGVLKSGMITFEPKLPQWKQEAI 300

Flavoenzyme that catalyzes the sequential oxidation of spermine to spermidine, and of spermidine to putrescine. Substrate preference is spermidine > spermine > N(1)-acetylspermidine > N(1)-acetylspermine. No activity detected when diamines (agmatine, cadaverine or putrescine) or N(8)-acetylspermidine are used as substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: 7

>sp|Q6YYZ1|LDL2_ORYSJ Lysine-specific histone demethylase 1 homolog 2 OS=Oryza sativa subsp. japonica GN=Os08g0143400 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 3/63 (4%)

Query: 67  LLLKKEVTKI-NWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLT 125
           +L +K V +I + ED  GV +T   G  + AD  L T  LGVLKS  I F P LP +KL 
Sbjct: 369 VLYEKTVKRIEHGED--GVSITVEGGQVFKADMALCTAPLGVLKSRSIIFEPELPERKLE 426

Query: 126 AIE 128
           AI+
Sbjct: 427 AIQ 429

Probable histone demethylase.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q8CIG3|KDM1B_MOUSE Lysine-specific histone demethylase 1B OS=Mus musculus GN=Kdm1b PE=1 SV=1

 Score = 46.2 bits (108), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 69  LKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAI 127
           LK  V  I++   + V VT  DG  +SA ++L+TV L +L+   I F PPL  KK+ AI
Sbjct: 600 LKSPVQSIDYTGDE-VQVTTTDGMGHSAQKVLVTVPLAILQRGAIQFNPPLSEKKMKAI 657

Histone demethylase that demethylates 'Lys-4' of histone H3, a specific tag for epigenetic transcriptional activation, thereby acting as a corepressor. Required for de novo DNA methylation of a subset of imprinted genes during oogenesis. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Demethylates both mono- and di-methylated 'Lys-4' of histone H3. Has no effect on tri-methylated 'Lys-4', mono-, di- or tri-methylated 'Lys-9', mono-, di- or tri-methylated 'Lys-27', mono-, di- or tri-methylated 'Lys-36' of histone H3, or on mono-, di- or tri-methylated 'Lys-20' of histone H4.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
242021355	477	Peroxisomal N1-acetyl-spermine/spermidin	0.857	0.264	0.416	1e-17
321472409	484	hypothetical protein DAPPUDRAFT_301970 [	0.863	0.262	0.389	6e-17
307183354	475	Peroxisomal N(1)-acetyl-spermine/spermid	0.897	0.277	0.380	2e-16
321466720	481	hypothetical protein DAPPUDRAFT_53901 [D	0.918	0.280	0.391	2e-16
322795354	838	hypothetical protein SINV_80022 [Solenop	0.897	0.157	0.365	3e-15
332019664	563	Peroxisomal N(1)-acetyl-spermine/spermid	0.877	0.229	0.366	4e-15
270002494	931	hypothetical protein TcasGA2_TC004564 [T	0.965	0.152	0.333	4e-15
170054634	481	spermine oxidase [Culex quinquefasciatus	0.870	0.266	0.375	8e-15
383858521	513	PREDICTED: peroxisomal N(1)-acetyl-sperm	0.823	0.235	0.370	9e-15
332019665	755	Peroxisomal N(1)-acetyl-spermine/spermid	0.897	0.174	0.343	1e-14

>gi|242021355|ref|XP_002431110.1| Peroxisomal N1-acetyl-spermine/spermidine oxidase precursor, putative [Pediculus humanus corporis] gi|212516359|gb|EEB18372.1| Peroxisomal N1-acetyl-spermine/spermidine oxidase precursor, putative [Pediculus humanus corporis]

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 57/137 (41%), Positives = 75/137 (54%), Gaps = 11/137 (8%)

Query: 1   MDYVGKNQNTYDGSENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPG--- 57
           ++Y  K QN  DGS +W ETS RG   + D  G  G+ WK   +  +F +L   +PG   
Sbjct: 161 VNYFEKWQNGLDGSHSWHETSLRGQLEYWDCPGNQGITWKNNRFSALFNILSGNIPGVSK 220

Query: 58  QTPIDLSKKLLLKKEVTKINW-----EDPKGVVVTCADGTQYSADRILITVSLGVLKSNL 112
           Q P++  +K+L  KEV  I W     ++   V+VTC DG+ YS D IL+T SLGVLK   
Sbjct: 221 QYPVE--EKVLFNKEVKFIKWNKECDKNVPNVLVTCTDGSMYSTDHILLTCSLGVLKEKS 278

Query: 113 IT-FVPPLPPKKLTAIE 128
              F P LP KK   IE
Sbjct: 279 TKLFSPALPLKKQLCIE 295

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321472409|gb|EFX83379.1| hypothetical protein DAPPUDRAFT_301970 [Daphnia pulex]

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 53/136 (38%), Positives = 77/136 (56%), Gaps = 9/136 (6%)

Query: 1   MDYVGKNQNTYDGSENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMP---G 57
           +D+    +N  DG++NW ET   G   + +  G   V WK+G Y  +FK+LMK +     
Sbjct: 163 LDWYHIMENVIDGADNWKETCGSGHLHYKECSGDPLVTWKRG-YSTLFKILMKNLSKSHS 221

Query: 58  QTPIDLSKKLLLKKEVTKINWEDP----KGVVVTCADGTQYSADRILITVSLGVLKSNLI 113
              + LS ++ L K VT I+W+      K + VTC DG+ Y AD +L+T SLG LKSN+ 
Sbjct: 222 DQQLPLSDRIFLNKAVTNIDWDSEATSEKKIQVTCEDGSLYPADFVLVTASLGFLKSNMH 281

Query: 114 T-FVPPLPPKKLTAIE 128
           + F+P LP  K  AI+
Sbjct: 282 SLFIPALPTYKKRAIQ 297

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307183354|gb|EFN70212.1| Peroxisomal N(1)-acetyl-spermine/spermidine oxidase [Camponotus floridanus]

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 81/134 (60%), Gaps = 2/134 (1%)

Query: 1   MDYVGKNQNTYDGSENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPG-QT 59
           + ++ K +N+ + S+ WF+ SA+ L  + + EG   + WK  GY  +F LL K++P  + 
Sbjct: 158 LSWMEKTENSVECSDTWFDVSAKRLSEYWECEGDLLLNWKDRGYKTLFDLLSKKIPNPEE 217

Query: 60  PIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLIT-FVPP 118
            + + +K+  +K VT I++   K V+VT  DG++YSA  ++ T SLGVLK    T FVP 
Sbjct: 218 CLPVMEKIEFEKVVTTIDYSSSKDVMVTTKDGSEYSATHVIFTGSLGVLKEKHSTMFVPS 277

Query: 119 LPPKKLTAIELTNL 132
           LP KK  AI+  N+
Sbjct: 278 LPQKKQNAIKGLNI 291

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321466720|gb|EFX77714.1| hypothetical protein DAPPUDRAFT_53901 [Daphnia pulex]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 56/143 (39%), Positives = 78/143 (54%), Gaps = 8/143 (5%)

Query: 1   MDYVGKNQNTYDGSENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQT- 59
           +D+  ++QN  DGS+NW +TS  G   + + EG +  VWK+ GY  +F +LMK +P  + 
Sbjct: 163 LDWAHRSQNIEDGSDNWNDTSGVGSLEYHECEGDYTTVWKR-GYSVLFDILMKNVPKTSN 221

Query: 60  --PIDLSKKLLLKKEVTKINWED--PKGVVVTCADGTQYSADRILITVSLGVLKSNLIT- 114
              + LS ++ L   V  I W      GV V C+D T Y AD +LIT SLGVLK      
Sbjct: 222 GLKLSLSDRIQLNSPVNLIRWNSAPSSGVQVVCSDKTYY-ADMVLITCSLGVLKDRADKL 280

Query: 115 FVPPLPPKKLTAIELTNLTSIQQ 137
           F P LP KK  AIE     ++ +
Sbjct: 281 FTPLLPEKKRRAIEALGFGTVNK 303

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322795354|gb|EFZ18159.1| hypothetical protein SINV_80022 [Solenopsis invicta]

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 49/134 (36%), Positives = 77/134 (57%), Gaps = 2/134 (1%)

Query: 1   MDYVGKNQNTYDGSENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMP-GQT 59
           + ++ K +N+   S++WF+ SA+ L  + + EG   + WK  GY  +F LL++++P  + 
Sbjct: 20  LSWIEKMENSIQCSDSWFDVSAKRLTEYWECEGDSTLDWKTRGYKTIFDLLLRRIPNAEE 79

Query: 60  PIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLIT-FVPP 118
            + + +K+   K VT IN+   + V V   DG +YSA  ++ T SLGVLK    T FVPP
Sbjct: 80  CLPIMEKIEFGKVVTTINYSSGENVTVITRDGCEYSALHVIFTGSLGVLKEKHSTMFVPP 139

Query: 119 LPPKKLTAIELTNL 132
           L  KK   IE  N+
Sbjct: 140 LSQKKQRVIEGLNI 153

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019664|gb|EGI60138.1| Peroxisomal N(1)-acetyl-spermine/spermidine oxidase [Acromyrmex echinatior]

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 75/131 (57%), Gaps = 2/131 (1%)

Query: 4   VGKNQNTYDGSENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMP-GQTPID 62
           + K QN+ D S+ WF+ S +    + + EG   + WK  GY  +F +L++++P  +  + 
Sbjct: 250 IEKMQNSADCSDTWFDVSVKLFIDYWECEGDLTLNWKGRGYKTIFDVLLQKIPNSEERLP 309

Query: 63  LSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLIT-FVPPLPP 121
           + +K+  +K V  IN+   + V VT  DG +Y A  ++ T SLGVLK    + FVPPLP 
Sbjct: 310 VMEKIEFEKVVATINYSSGENVTVTTRDGCEYFASHVIFTGSLGVLKEKHSSMFVPPLPQ 369

Query: 122 KKLTAIELTNL 132
           KK  AIE  N+
Sbjct: 370 KKQRAIEGLNI 380

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270002494|gb|EEZ98941.1| hypothetical protein TcasGA2_TC004564 [Tribolium castaneum]

 Score = 85.9 bits (211), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 80/144 (55%), Gaps = 2/144 (1%)

Query: 1   MDYVGKNQNTYDGSENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTP 60
           +D+  K     + +++W E S  G   + + EG   + W+K G+  V  +LMK++P  + 
Sbjct: 157 LDWFHKLWMCLESAKSWDELSPNGAYQYKECEGDLYLQWRKTGFKTVLDVLMKKIPDPSR 216

Query: 61  IDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLP 120
             L  ++LL KEV KI W+    V V C D + +  D ++IT S+G LK+   +F P LP
Sbjct: 217 T-LPVEILLNKEVNKIIWDCDNNVTVRCTDNSAFKCDHLIITASIGALKNLSESFEPQLP 275

Query: 121 PKKLTAIELTNLTSIQQDTLFQIP 144
           P K +AI+LT +  +++  L + P
Sbjct: 276 PIKQSAIDLTAIGDVKK-ILLKFP 298

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170054634|ref|XP_001863219.1| spermine oxidase [Culex quinquefasciatus] gi|167874906|gb|EDS38289.1| spermine oxidase [Culex quinquefasciatus]

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 73/133 (54%), Gaps = 5/133 (3%)

Query: 1   MDYVGKNQNTYDGSENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQ-- 58
            ++  K   TY+  +  +E SA GL  FTD +  + + WK  G+  +  ++MK++P Q  
Sbjct: 154 FEFFQKYHTTYNAVDTLYEVSAPGLLEFTDHQDEYLINWKGRGFKTILDIMMKRLPEQKT 213

Query: 59  TPIDLSKKLLLKKEVTKINWEDPKG--VVVTCADGTQYSADRILITVSLGVLKSNLIT-F 115
            PI L   +   K VT I++       V VTC+D + Y  D ++ITVSLGVLK N+ + F
Sbjct: 214 APIPLEDFIQFNKRVTNISYPSDADYPVRVTCSDDSCYVVDHVIITVSLGVLKENIHSLF 273

Query: 116 VPPLPPKKLTAIE 128
            P LP  K  AIE
Sbjct: 274 TPKLPLIKTNAIE 286

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858521|ref|XP_003704749.1| PREDICTED: peroxisomal N(1)-acetyl-spermine/spermidine oxidase-like [Megachile rotundata]

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 46/124 (37%), Positives = 73/124 (58%), Gaps = 3/124 (2%)

Query: 8   QNTYDGSENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPG-QTPIDLSKK 66
           Q + D +++W++ +A     +   EG   + WK+ GYG +  +LMK+ P     + L  +
Sbjct: 194 QTSLDPADSWYDIAAEKYTEYQICEGDQAINWKERGYGTILDILMKKYPDPANELPLLNR 253

Query: 67  LLLKKEVTKINWEDPKGVV-VTCADGTQYSADRILITVSLGVLKSNLIT-FVPPLPPKKL 124
             L  EVTKI++ +  G + +T  DGT+Y AD +++TVSLGVLK+   T F PPLP  K+
Sbjct: 254 TKLNTEVTKIDYSNEDGTMKITTDDGTEYVADHVIVTVSLGVLKAQHETLFNPPLPENKV 313

Query: 125 TAIE 128
             I+
Sbjct: 314 KNIK 317

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019665|gb|EGI60139.1| Peroxisomal N(1)-acetyl-spermine/spermidine oxidase [Acromyrmex echinatior]

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/134 (34%), Positives = 77/134 (57%), Gaps = 2/134 (1%)

Query: 1   MDYVGKNQNTYDGSENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPG-QT 59
           + ++ K +N+   S+ WF+ SA+ L  + + EG   + WK  GY  +F LL++++P  + 
Sbjct: 159 LSWIEKMENSIQCSDTWFDISAKRLTEYRECEGDLVLDWKNYGYKTIFDLLLQKIPNPEE 218

Query: 60  PIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLIT-FVPP 118
            + + +K+  +K V  IN+   +  ++T  DG +Y A  ++ T SLGVLK    + FVPP
Sbjct: 219 RLPVMEKIEFEKVVATINYSSGENAMITTKDGCEYFASHVIFTGSLGVLKEKHSSMFVPP 278

Query: 119 LPPKKLTAIELTNL 132
           L  KK  AIE  N+
Sbjct: 279 LSQKKQRAIEGLNI 292

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
FB|FBgn0035943	480	CG5653 [Drosophila melanogaste	0.891	0.272	0.345	6e-14
FB|FBgn0036749	486	CG7460 [Drosophila melanogaste	0.945	0.286	0.335	2e-12
FB|FBgn0033584	509	CG7737 [Drosophila melanogaste	0.836	0.241	0.357	9.8e-12
ZFIN|ZDB-GENE-030131-5768	495	zgc:66484 "zgc:66484" [Danio r	0.782	0.232	0.346	1.5e-11
FB|FBgn0036750	479	CG6034 [Drosophila melanogaste	0.850	0.260	0.330	2.4e-11
TAIR|locus:2018571	497	PAO4 "polyamine oxidase 4" [Ar	0.687	0.203	0.364	2e-07
TAIR|locus:2173219	472	PAO1 "polyamine oxidase 1" [Ar	0.442	0.137	0.378	2.3e-07
UNIPROTKB|G4MR69	1200	MGG_09915 "Lysine-specific his	0.782	0.095	0.330	7.9e-07
CGD|CAL0002916	477	orf19.4589 [Candida albicans (	0.687	0.211	0.333	2.8e-06
TAIR|locus:2134393	533	PAO5 "polyamine oxidase 5" [Ar	0.523	0.144	0.404	3.3e-06

FB|FBgn0035943 CG5653 [Drosophila melanogaster (taxid:7227)]

 Score = 188 (71.2 bits), Expect = 6.0e-14, P = 6.0e-14
 Identities = 47/136 (34%), Positives = 75/136 (55%)

Query:     6 KNQNTYDGSENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSK 65
             K++++  G++N FE S R    + + +G   + W   GY    +LLMK +   TP +L  
Sbjct:   166 KHESSIIGADNLFEVSVREHIEYHECDGDKLLHWGTKGYRRFLRLLMK-VSEDTPEELGL 224

Query:    66 ---KLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKS-NLITFVPPLPP 121
                ++ L K+V KI    P+ V++ C DG  + AD ++ TVSLGVL+  +   FVPPLP 
Sbjct:   225 LEGRIQLDKKVIKIELACPRKVILRCQDGDYFGADHVICTVSLGVLQEQHEKLFVPPLPA 284

Query:   122 KKLTAIELTNLTSIQQ 137
              K+ AI    L ++ +
Sbjct:   285 AKVNAIRSLTLGTVNK 300

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

FB|FBgn0036749 CG7460 [Drosophila melanogaster (taxid:7227)]

 Score = 174 (66.3 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 48/143 (33%), Positives = 76/143 (53%)

Query:     6 KNQNTYDGSENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTP-IDLS 64
             K + + + +++ FE S +G   +   EG   + WK  GY    KLLMK    Q+  + + 
Sbjct:   172 KFEASVEAADHLFEVSGKGHLEYWLCEGELLLNWKDKGYKRFLKLLMKAPEDQSEDLGIL 231

Query:    65 KK-LLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKS-NLITFVPPLPPK 122
             K  + L + + +INW+    + V C +G   +AD ++ TVSLGVLK  +   FVP LP  
Sbjct:   232 KDHVRLNRRIAEINWKGADELTVRCWNGEVITADHVICTVSLGVLKEQHPKLFVPALPAA 291

Query:   123 KLTAIELTNLTSIQQDTL-FQIP 144
             K+ AIE   L ++ +  L F+ P
Sbjct:   292 KVRAIEGLKLGTVDKFFLEFENP 314

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

FB|FBgn0033584 CG7737 [Drosophila melanogaster (taxid:7227)]

 Score = 168 (64.2 bits), Expect = 9.8e-12, P = 9.8e-12
 Identities = 45/126 (35%), Positives = 67/126 (53%)

Query:     6 KNQNTYDGSENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPID-LS 64
             K +N+ + S+   + S RG   + + EG   + WK  GY  + +LLM+          L 
Sbjct:   170 KFENSVEASDTLEQVSGRGYLDYWECEGDILLNWKDKGYVELLRLLMRSRELNVEHGVLE 229

Query:    65 KKLLLKKEVTKINWEDPKG-VVVTCADGTQYSADRILITVSLGVLKS-NLITFVPPLPPK 122
             ++LLL   V KINW    G V +  ++G    AD +++TVSLGVLK  +L  F P LP +
Sbjct:   230 QRLLLGTRVVKINWNRNDGRVELQMSNGETCIADHVVVTVSLGVLKDQHLRLFEPQLPVE 289

Query:   123 KLTAIE 128
             K  AI+
Sbjct:   290 KQRAID 295

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

ZFIN|ZDB-GENE-030131-5768 zgc:66484 "zgc:66484" [Danio rerio (taxid:7955)]

 Score = 166 (63.5 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 43/124 (34%), Positives = 69/124 (55%)

Query:    10 TYDGSENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQT-----PIDLS 64
             T +   + +E SA  L ++T+LEG F      GGY  +  +L++ +P +      P+   
Sbjct:   178 TDEACSSLYEISASQLSNYTELEGGFFNTLGPGGYQAILDVLLRDVPSEAVRCNAPVKTI 237

Query:    65 KKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLIT-FVPPLPPKK 123
             +  L+K+  ++   E+   V V C +G  + AD +++TVSLGVLK +  T F P LP KK
Sbjct:   238 RWDLVKEGQSE---EEDHPVQVVCENGQTFEADHVIVTVSLGVLKEHAKTMFDPTLPEKK 294

Query:   124 LTAI 127
             L+AI
Sbjct:   295 LSAI 298

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

FB|FBgn0036750 CG6034 [Drosophila melanogaster (taxid:7227)]

 Score = 164 (62.8 bits), Expect = 2.4e-11, P = 2.4e-11
 Identities = 43/130 (33%), Positives = 64/130 (49%)

Query:    12 DGSENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQ---MPGQTPIDLSKKLL 68
             D  +N  E S R   +F    G   + W++ GY     +L+      PG   I L   + 
Sbjct:   172 DACDNLSELSYRNFRNFAIAGGDQNLSWRQKGYWKFLSVLLNSSDNQPGDQGI-LKGHVH 230

Query:    69 LKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKS-NLITFVPPLPPKKLTAI 127
             L K + KINWE    + + C +G   SAD ++ TVSLGVL+  +   FVP LP  K+ +I
Sbjct:   231 LNKRIAKINWEGDGELTLRCWNGQFVSADHVICTVSLGVLREKHHKLFVPALPASKIRSI 290

Query:   128 ELTNLTSIQQ 137
             E   L ++ +
Sbjct:   291 EGLKLGTVNK 300

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

TAIR|locus:2018571 PAO4 "polyamine oxidase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 43/118 (36%), Positives = 57/118 (48%)

Query:    15 ENWFETSARGLD-SFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPI--DLSKKL--LL 69
             E WF   A  +     D + C       GG+G     LM Q  G  P+   ++K L   L
Sbjct:   196 EAWFAVDANLISLKCWDQDECLS-----GGHG-----LMVQ--GYEPVIRTIAKDLDIRL 243

Query:    70 KKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAI 127
                VTK+       V+V    GT + AD ++ITV +GVLK+NLI F P LP  K +AI
Sbjct:   244 NHRVTKVVRTSNNKVIVAVEGGTNFVADAVIITVPIGVLKANLIQFEPELPQWKTSAI 301

GO:0005634 "nucleus" evidence=ISM

GO:0008131 "primary amine oxidase activity" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA;IDA;IMP

GO:0046592 "polyamine oxidase activity" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

TAIR|locus:2173219 PAO1 "polyamine oxidase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
 Identities = 25/66 (37%), Positives = 42/66 (63%)

Query:    63 LSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPK 122
             L  +L L + V ++  +   GVVV   DG+ Y A+ ++++ S+GVL+S+L++F P LP  
Sbjct:   203 LDYRLKLNQVVREVQ-QSRNGVVVKTEDGSVYEANYVIVSASIGVLQSDLLSFQPLLPRW 261

Query:   123 KLTAIE 128
             K  AI+
Sbjct:   262 KTEAIQ 267

GO:0005739 "mitochondrion" evidence=ISM

GO:0046592 "polyamine oxidase activity" evidence=IDA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

UNIPROTKB|G4MR69 MGG_09915 "Lysine-specific histone demethylase 1" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 127 (49.8 bits), Expect = 7.9e-07, P = 7.9e-07
 Identities = 41/124 (33%), Positives = 61/124 (49%)

Query:    11 YDGSENWFETSARG--LDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSK--K 66
             Y  + N  + S RG  +D   + EG   +V   GGY ++  L + Q+P    I   K  K
Sbjct:   683 YSNATNVHQLSLRGWDIDMGNEWEGKHTMV--VGGYQSL-ALGLAQIPSSLDIKYKKVVK 739

Query:    67 LLLKK--EVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKL 124
              + +K  +   +  ++  G  +   DG+   AD ++ T+ LGVLK   ITF PPLP  K 
Sbjct:   740 TIRRKSSDEDSLPADEQPGYKIELEDGSNIDADYVVNTIPLGVLKHGDITFDPPLPSWKA 799

Query:   125 TAIE 128
              AIE
Sbjct:   800 DAIE 803

GO:0005575 "cellular_component" evidence=ND

CGD|CAL0002916 orf19.4589 [Candida albicans (taxid:5476)]

 Score = 117 (46.2 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 38/114 (33%), Positives = 59/114 (51%)

Query:    15 ENWFETSARGLDSFTDLEGCFGV-VWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEV 73
             E+W   S  G  +F D +G  G   + K GY  VF   +K++P +   D + KL    +V
Sbjct:   168 ESWDLLS--GKYTFAD-DGHLGRNAFVKNGYSTVFINELKELP-RAYRDSAIKL--NAQV 221

Query:    74 TKINWEDPKGVVVTCADGTQYSADRILITVSLGVLK------SNLITFVPPLPP 121
              KI++ + K ++V   DG  YS D I++T+   +LK       N + +VP LPP
Sbjct:   222 IKIDYTNKKKILVYLKDGRTYSCDYIIVTIPQTILKITNAKDENYVEWVPELPP 275

GO:0005737 "cytoplasm" evidence=IEA

GO:0006598 "polyamine catabolic process" evidence=IEA

GO:0015940 "pantothenate biosynthetic process" evidence=IEA

GO:0046592 "polyamine oxidase activity" evidence=IEA

TAIR|locus:2134393 PAO5 "polyamine oxidase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 3.3e-06, P = 3.3e-06
 Identities = 36/89 (40%), Positives = 50/89 (56%)

Query:    43 GYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILIT 102
             GY +V   L   +P Q  I L++K      VTKI W+  + V +  +DG+   AD +++T
Sbjct:   239 GYLSVIHHLASVLP-QGVIQLNRK------VTKIEWQSNE-VKLHFSDGSVVFADHVIVT 290

Query:   103 VSLGVLKSNLIT----FVPPLPPKKLTAI 127
             VSLGVLK+ + T    F PPLP  K  AI
Sbjct:   291 VSLGVLKAGIETDAELFSPPLPDFKSDAI 319

GO:0005739 "mitochondrion" evidence=ISM

GO:0008131 "primary amine oxidase activity" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	147
PLN02268	435	PLN02268, PLN02268, probable polyamine oxidase	2e-15
PLN02676	487	PLN02676, PLN02676, polyamine oxidase	2e-14
pfam01593	444	pfam01593, Amino_oxidase, Flavin containing amine	2e-13
PLN02568	539	PLN02568, PLN02568, polyamine oxidase	7e-13
PLN02976	1713	PLN02976, PLN02976, amine oxidase	9e-10
COG1231	450	COG1231, COG1231, Monoamine oxidase [Amino acid tr	3e-07
PLN03000	881	PLN03000, PLN03000, amine oxidase	2e-06
PLN02529	738	PLN02529, PLN02529, lysine-specific histone demeth	2e-05
PLN02328	808	PLN02328, PLN02328, lysine-specific histone demeth	2e-05

>gnl|CDD|177909 PLN02268, PLN02268, probable polyamine oxidase

 Score = 71.3 bits (175), Expect = 2e-15
 Identities = 45/118 (38%), Positives = 55/118 (46%), Gaps = 18/118 (15%)

Query: 15  ENWFET-----SARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLL 69
           E WF       S +  D    LEG  G++ +  GY  V   L K       +D+     L
Sbjct: 168 EGWFAADADTISLKSWDQEELLEGGHGLMVR--GYDPVINTLAKG------LDIR----L 215

Query: 70  KKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAI 127
              VTKI      GV VT  DGT + AD  +I V LGVLK+N+I F P LP  K  AI
Sbjct: 216 NHRVTKIV-RRYNGVKVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAI 272

Length = 435

>gnl|CDD|215362 PLN02676, PLN02676, polyamine oxidase

 Score = 68.6 bits (168), Expect = 2e-14
 Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 1/63 (1%)

Query: 66  KLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLT 125
           +L L K V +I++    GV V   DG+ Y A  ++++VSLGVL+S+LI F PPLP  K+ 
Sbjct: 246 RLKLNKVVREISYS-KNGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIE 304

Query: 126 AIE 128
           AI 
Sbjct: 305 AIY 307

Length = 487

>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase

 Score = 65.7 bits (160), Expect = 2e-13
 Identities = 29/73 (39%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 62  DLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPP 121
            L  ++ L   V  I      GV VT  DG    AD +++TV LGVLK   I F+PPLP 
Sbjct: 216 LLGGRVRLNTRVRSITKS-GDGVTVTTVDGRTIEADAVIVTVPLGVLKR--ILFLPPLPA 272

Query: 122 KKLTAIELTNLTS 134
            K  AI      S
Sbjct: 273 AKQEAIRNLGFGS 285

This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins. Length = 444

>gnl|CDD|215308 PLN02568, PLN02568, polyamine oxidase

 Score = 64.1 bits (156), Expect = 7e-13
 Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 12/91 (13%)

Query: 42  GGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILI 101
            GY +V + L   +P  T       + L ++VT+I W+  + V +  ADG+  +AD +++
Sbjct: 239 KGYLSVIEALASVLPPGT-------IQLGRKVTRIEWQ-DEPVKLHFADGSTMTADHVIV 290

Query: 102 TVSLGVLKSNLIT----FVPPLPPKKLTAIE 128
           TVSLGVLK+ +      F PPLP  K  AI 
Sbjct: 291 TVSLGVLKAGIGEDSGLFSPPLPDFKTDAIS 321

Length = 539

>gnl|CDD|215527 PLN02976, PLN02976, amine oxidase

 Score = 55.6 bits (134), Expect = 9e-10
 Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 19/97 (19%)

Query: 41   KGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINW---------EDPKGVVVTCADG 91
            KGGY NV + L + +           + L   VT +++            K V V+ ++G
Sbjct: 932  KGGYSNVVESLAEGLD----------IHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNG 981

Query: 92   TQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIE 128
            +++  D +LITV LG LK+  I F PPLP  K ++I+
Sbjct: 982  SEFLGDAVLITVPLGCLKAETIKFSPPLPDWKYSSIQ 1018

Length = 1713

>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and metabolism]

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 51  LMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKS 110
            M Q+       L  ++LL + V +I+ +D  GV VT  D  QY AD +L+T+ L +L  
Sbjct: 207 GMDQLAEAFAKQLGTRILLNEPVRRID-QDGDGVTVTADDVGQYVADYVLVTIPLAILGQ 265

Query: 111 NLITFVPPLPPKKLTAIELTN 131
             I F P LP +   A +   
Sbjct: 266 --IDFAPLLPAEYKQAAKGVP 284

Length = 450

>gnl|CDD|178578 PLN03000, PLN03000, amine oxidase

 Score = 45.8 bits (108), Expect = 2e-06
 Identities = 32/87 (36%), Positives = 43/87 (49%), Gaps = 12/87 (13%)

Query: 42  GGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILI 101
           GG G + + L + +P          +L +K V  I +    GV V  A    Y  D +L 
Sbjct: 378 GGNGRLVQALAENVP----------ILYEKTVQTIRY-GSNGVKVI-AGNQVYEGDMVLC 425

Query: 102 TVSLGVLKSNLITFVPPLPPKKLTAIE 128
           TV LGVLK+  I FVP LP +KL  I+
Sbjct: 426 TVPLGVLKNGSIKFVPELPQRKLDCIK 452

Length = 881

>gnl|CDD|178144 PLN02529, PLN02529, lysine-specific histone demethylase 1

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 26/58 (44%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 71  KEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIE 128
           K V  I + +  GV V  A    + AD +L TV LGVLK   I F P LP +KL AI+
Sbjct: 373 KTVDTIKYGN-DGVEVI-AGSQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAID 428

Length = 738

>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog

 Score = 42.7 bits (100), Expect = 2e-05
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 83  GVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIE 128
           GV+V  A G ++  D +L TV LGVLK   I F P LP +K  AI+
Sbjct: 464 GVIVY-AGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQ 508

Length = 808

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	147
1b37_A	472	A 30 Angstrom U-Shaped Catalytic Tunnel In The Crys		3e-08
3kpf_A	478	X-Ray Structure Of The Mutant Lys300met Of Polyamin		3e-08
4gu1_A	784	Crystal Structure Of Lsd2 Length = 784		1e-06
4gur_A	776	Crystal Structure Of Lsd2-npac With H3 In Space Gro		1e-06
4fwe_A	796	Native Structure Of Lsd2 /aof1/kdm1b In Spacegroup		1e-06
1yy5_A	513	Crystal Structure Of Fms1, A Polyamine Oxidase From		1e-05
1z6l_A	516	Crystal Structure Of Fms1 In Complex With Its Subst		2e-05
4gdp_A	516	Yeast Polyamine Oxidase Fms1, N195a Mutant Length =		2e-05
1rsg_A	516	Crystal Structure Of The Polyamine Oxidase Fms1 Fro		2e-05
4ech_A	516	Yeast Polyamine Oxidase Fms1, H67q Mutant Length =		2e-05

>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal Structure Of Polyamine Oxidase Length = 472

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 66  KLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLT 125
           +L L K V +I +  P GV V   D + YSAD ++++ SLGVL+S+LI F P LP  K+ 
Sbjct: 230 RLQLNKVVREIKYS-PGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVR 288
Query: 126 AI 127
           AI
Sbjct: 289 AI 290

>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine Oxidase From Zea Mays Length = 478

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 66  KLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLT 125
           +L L K V +I +  P GV V   D + YSAD ++++ SLGVL+S+LI F P LP  K+ 
Sbjct: 230 RLQLNKVVREIKYS-PGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVR 288
Query: 126 AI 127
           AI
Sbjct: 289 AI 290

>pdb|4GU1|A Chain A, Crystal Structure Of Lsd2 Length = 784

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 69  LKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAI 127
           LK  V  I++   + V VT  DGT YSA ++L+TV L +L+   I F PPL  KK+ AI
Sbjct: 556 LKSPVQCIDYSGDE-VQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAI 613

>pdb|4GUR|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group P21 Length = 776

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 69  LKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAI 127
           LK  V  I++   + V VT  DGT YSA ++L+TV L +L+   I F PPL  KK+ AI
Sbjct: 548 LKSPVQCIDYSGDE-VQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAI 605

>pdb|4FWE|A Chain A, Native Structure Of Lsd2 /aof1/kdm1b In Spacegroup Of C2221 At 2.13a Length = 796

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 69  LKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAI 127
           LK  V  I++   + V VT  DGT YSA ++L+TV L +L+   I F PPL  KK+ AI
Sbjct: 568 LKSPVQCIDYSGDE-VQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAI 625

>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast Length = 513

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 67  LLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVL------KSNL---ITFVP 117
           L L  EV  I  E  K V V C DGT Y+AD ++ITV   VL      + NL   I F P
Sbjct: 217 LKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQP 276
Query: 118 PLPP 121
           PL P
Sbjct: 277 PLKP 280

>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate Length = 516

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 67  LLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVL------KSNL---ITFVP 117
           L L  EV  I  E  K V V C DGT Y+AD ++ITV   VL      + NL   I F P
Sbjct: 217 LKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQP 276
Query: 118 PLPP 121
           PL P
Sbjct: 277 PLKP 280

>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant Length = 516

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 67  LLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVL------KSNL---ITFVP 117
           L L  EV  I  E  K V V C DGT Y+AD ++ITV   VL      + NL   I F P
Sbjct: 217 LKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQP 276
Query: 118 PLPP 121
           PL P
Sbjct: 277 PLKP 280

>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast Length = 516

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 67  LLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVL------KSNL---ITFVP 117
           L L  EV  I  E  K V V C DGT Y+AD ++ITV   VL      + NL   I F P
Sbjct: 217 LKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQP 276
Query: 118 PLPP 121
           PL P
Sbjct: 277 PLKP 280

>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant Length = 516

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 67  LLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVL------KSNL---ITFVP 117
           L L  EV  I  E  K V V C DGT Y+AD ++ITV   VL      + NL   I F P
Sbjct: 217 LKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQP 276
Query: 118 PLPP 121
           PL P
Sbjct: 277 PLKP 280

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	147
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	1e-31
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	3e-25
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	7e-24
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	1e-22
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	2e-22
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	5e-22
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	2e-21
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	9e-21
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	2e-15
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	2e-12
2e1m_B	130	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	8e-07

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Length = 472

 Score =  116 bits (291), Expect = 1e-31
 Identities = 40/131 (30%), Positives = 59/131 (45%), Gaps = 4/131 (3%)

Query: 1   MDYVGKNQNTYDGSENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTP 60
           +DY   +    +        +   L +F+D       V  + GY  V   L  Q      
Sbjct: 162 VDYYKFDYEFAEPPRVTSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDD 221

Query: 61  I---DLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVP 117
                +  +L L K V +I +  P GV V   D + YSAD ++++ SLGVL+S+LI F P
Sbjct: 222 KSGKIVDPRLQLNKVVREIKY-SPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKP 280

Query: 118 PLPPKKLTAIE 128
            LP  K+ AI 
Sbjct: 281 KLPTWKVRAIY 291

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Length = 516

 Score = 99.1 bits (246), Expect = 3e-25
 Identities = 36/123 (29%), Positives = 48/123 (39%), Gaps = 16/123 (13%)

Query: 15  ENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVT 74
           E W     + L +     G  G       Y +V + + +  P          L L  EV 
Sbjct: 172 ELWHGLDWKLLSAKDTYFGHQGRNAFALNYDSVVQRIAQSFPQN-------WLKLSCEVK 224

Query: 75  KINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNL---------ITFVPPLPPKKLT 125
            I  E  K V V C DGT Y+AD ++ITV   VL  ++         I F PPL P    
Sbjct: 225 SITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQD 284

Query: 126 AIE 128
           A +
Sbjct: 285 AFD 287

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score = 94.9 bits (236), Expect = 7e-24
 Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 11/112 (9%)

Query: 17  WFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKI 76
           W+     G                 GG G V + +M  +          ++ L++ V  I
Sbjct: 187 WYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLLGD--------RVKLERPVIYI 238

Query: 77  NWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIE 128
           +    + V+V   +   Y A  ++  +   +     I F PPLP  +   I 
Sbjct: 239 DQ-TRENVLVETLNHEMYEAKYVISAIPPTLGMK--IHFNPPLPMMRNQMIT 287

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495

 Score = 91.5 bits (227), Expect = 1e-22
 Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 7/107 (6%)

Query: 22  ARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDP 81
           A    ++     C      K G     +   ++  G   +      +    V  +   + 
Sbjct: 232 AMSGYTYQGCMDCLMSYKFKDGQSAFARRFWEEAAGTGRLGY----VFGCPVRSVVN-ER 286

Query: 82  KGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIE 128
               VT  DG ++ A R++ T+ L VL +  I F P L  ++++A++
Sbjct: 287 DAARVTARDGREFVAKRVVCTIPLNVLST--IQFSPALSTERISAMQ 331

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score = 90.6 bits (225), Expect = 2e-22
 Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 12/115 (10%)

Query: 14  SENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEV 73
                  SA       D E         GG   V   + + +           + L   V
Sbjct: 185 QAVLMAASAGSFSHLVD-EDFILDKRVIGGMQQVSIRMAEALGD--------DVFLNAPV 235

Query: 74  TKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIE 128
             + W +  G  V      +  A R+++ V   +     I++ PPLP ++    +
Sbjct: 236 RTVKW-NESGATVLADGDIRVEASRVILAVPPNLYSR--ISYDPPLPRRQHQMHQ 287

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Length = 662

 Score = 89.9 bits (222), Expect = 5e-22
 Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 17/126 (13%)

Query: 10  TYDGSENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLL 69
            +  +      S +  D   D E     +  + GY  V   L + +           + L
Sbjct: 366 EFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLD----------IKL 415

Query: 70  KKEVTKINWEDPKGVVVT-----CADGTQYSADRILITVSLGVLKSN--LITFVPPLPPK 122
              V ++ +      V+       +    Y  D +L T+ LGVLK     + FVPPLP  
Sbjct: 416 NTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEW 475

Query: 123 KLTAIE 128
           K +A++
Sbjct: 476 KTSAVQ 481

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 88.5 bits (218), Expect = 2e-21
 Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 17/125 (13%)

Query: 11  YDGSENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLK 70
           +  +      S +  D   D E     +  + GY  V   L + +           + L 
Sbjct: 538 FANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLD----------IKLN 587

Query: 71  KEVTKINWEDPKGVVVT-----CADGTQYSADRILITVSLGVLKSN--LITFVPPLPPKK 123
             V ++ +      V+       +    Y  D +L T+ LGVLK     + FVPPLP  K
Sbjct: 588 TAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWK 647

Query: 124 LTAIE 128
            +A++
Sbjct: 648 TSAVQ 652

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431

 Score = 86.0 bits (213), Expect = 9e-21
 Identities = 20/105 (19%), Positives = 42/105 (40%), Gaps = 13/105 (12%)

Query: 25  LDSFTDLEGCFGVVWK-KGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKG 83
              ++ L     +      G  ++   + +++P         ++ L+  VT I+      
Sbjct: 186 AHHYSILGVVLSLDEVFSNGSADLVDAMSQEIP---------EIRLQTVVTGIDQ-SGDV 235

Query: 84  VVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIE 128
           V VT  DG  + A  +++   +   +   I F P LP ++ + IE
Sbjct: 236 VNVTVKDGHAFQAHSVIVATPMNTWRR--IVFTPALPERRRSVIE 278

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498

 Score = 71.1 bits (174), Expect = 2e-15
 Identities = 27/131 (20%), Positives = 48/131 (36%), Gaps = 18/131 (13%)

Query: 2   DYVGKNQNTYDGSENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPI 61
           D +G   N   G    F  S +  D F   +    +V    G   +   + + +      
Sbjct: 201 DMIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIV---DGMDKLPTAMYRDIQD---- 253

Query: 62  DLSKKLLLKKEVTKINWEDPKGVVVTC----ADGTQYSADRILITVSLGVLKSNLITFVP 117
               K+    +V KI   + + V V       +    +AD +++  +   ++   I F P
Sbjct: 254 ----KVHFNAQVIKIQQ-NDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRL--IKFNP 306

Query: 118 PLPPKKLTAIE 128
           PL PKK  A+ 
Sbjct: 307 PLLPKKAHALR 317

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489

 Score = 62.2 bits (151), Expect = 2e-12
 Identities = 20/127 (15%), Positives = 40/127 (31%), Gaps = 15/127 (11%)

Query: 5   GKNQNTYDGSENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLS 64
           G  +  +   E       R        +    +    GG   ++     ++        +
Sbjct: 199 GTEKKPFAMQEVIRSGIGRNFSFDFGYDQAMMMFTPVGGMDRIYYAFQDRIG-------T 251

Query: 65  KKLLLKKEVTKINWEDPKGVVVTCADG---TQYSADRILITVSLGVLKSNLITFVPPLPP 121
             ++   EVT +     +GV V    G      +AD  + T+   ++          LP 
Sbjct: 252 DNIVFGAEVTSMKN-VSEGVTVEYTAGGSKKSITADYAICTIPPHLVG----RLQNNLPG 306

Query: 122 KKLTAIE 128
             LTA++
Sbjct: 307 DVLTALK 313

>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 130

 Score = 44.6 bits (105), Expect = 8e-07
 Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 2/40 (5%)

Query: 89  ADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIE 128
           A    ++ D  ++T+    L+   +   PP   KK  A+ 
Sbjct: 1   AATQTWTGDLAIVTIPFSSLRF--VKVTPPFSYKKRRAVI 38

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	147
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	99.77
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	99.74
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	99.72
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.71
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	99.69
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	99.68
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	99.67
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	99.66
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	99.65
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.6
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	99.56
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	99.53
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.49
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.48
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.46
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.44
2e1m_B	130	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	99.38
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	99.36
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.35
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	99.26
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.25
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.19
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.17
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.06
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	99.01
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.71
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.23
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.07
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.04
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.96
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	97.93
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	97.9
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	97.84
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	97.54
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	97.44
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	96.98
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	96.9
3dme_A	369	Conserved exported protein; structural genomics, P	96.8
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.75
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.66
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	96.52
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	96.43
4hb9_A	412	Similarities with probable monooxygenase; flavin,	96.38
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	96.37
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	96.36
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	96.33
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	96.31
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	96.31
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	96.28
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	96.27
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	96.13
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	96.03
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	96.0
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	95.99
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	95.98
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	95.97
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	95.95
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	95.84
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	95.81
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	95.62
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	95.6
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	95.53
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	95.51
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	95.41
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	95.33
1fec_A	490	Trypanothione reductase; redox-active center, oxid	95.29
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	95.26
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	95.23
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	95.21
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	95.19
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	95.12
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	95.03
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	94.96
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	94.85
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	94.82
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	94.67
4dna_A	463	Probable glutathione reductase; structural genomic	94.67
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	94.65
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	94.62
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	94.41
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	94.4
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	94.39
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	94.33
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	94.33
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	94.27
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	94.27
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	94.21
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	94.18
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	94.11
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	94.08
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	94.07
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	94.06
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	94.03
1ojt_A	482	Surface protein; redox-active center, glycolysis,	93.9
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	93.86
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	93.83
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	93.8
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	93.73
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	93.7
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	93.7
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	93.7
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	93.68
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	93.59
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	93.58
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	93.55
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	93.53
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	93.46
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	93.4
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	93.24
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	93.22
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	93.14
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	93.11
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	92.96
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	92.95
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	92.86
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	92.83
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	92.82
3atr_A	453	Conserved archaeal protein; saturating double bond	92.8
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	92.68
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	92.57
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	92.53
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	92.44
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	92.43
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	92.43
2cul_A	232	Glucose-inhibited division protein A-related PROT	92.4
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	92.27
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	92.13
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	92.05
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	92.05
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	91.96
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	91.92
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	91.79
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	91.68
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	91.65
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	91.63
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	91.55
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	91.53
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	91.49
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	91.44
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	90.92
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	90.85
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	90.8
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	90.75
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	90.57
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	90.46
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	90.41
4fk1_A	304	Putative thioredoxin reductase; structural genomic	90.32
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	90.25
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	90.25
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	90.07
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	90.02
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	89.87
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	89.73
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	89.64
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	89.54
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	89.53
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	89.34
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	89.23
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	88.92
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	88.78
2bry_A	497	NEDD9 interacting protein with calponin homology a	88.7
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	88.42
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	88.4
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	88.29
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	88.05
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	87.66
3r9u_A	315	Thioredoxin reductase; structural genomics, center	87.56
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	87.54
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	87.29
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	87.19
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	86.94
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	86.77
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	86.73
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	86.57
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	86.48
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	86.33
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	86.06
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	85.94
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	84.91
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	84.86
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	84.81
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	84.81
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	84.74
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	84.65
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	84.59
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	83.82
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	83.8
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	83.67
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	83.49
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	83.01
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	82.92
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	82.55
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	82.24
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	82.11
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	81.86
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	81.81
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	81.78
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	81.74
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	80.86
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	80.4
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	80.38
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	80.33

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=99.77  E-value=5.9e-19  Score=150.61  Aligned_cols=121  Identities=24%  Similarity=0.377  Sum_probs=101.7

Q ss_pred             cCCCChhccccccccccc--cCCCCceeeecCCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeC
Q psy13542         12 DGSENWFETSARGLDSFT--DLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCA   89 (147)
Q Consensus        12 ~~g~~~~~~S~~~~~~~~--~~~g~~~~~~~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~   89 (147)
                      .++.+++.+|+..+....  ...|.+..  ++||+++|+++|++.+          +|++|++|++|.+ ++++|+|++.
T Consensus       368 ~~~~~l~~ls~~~~~~~~~~~~~g~~~~--~~gG~~~l~~~La~~l----------~I~l~~~V~~I~~-~~~~v~V~~~  434 (662)
T 2z3y_A          368 ANATPLSTLSLKHWDQDDDFEFTGSHLT--VRNGYSCVPVALAEGL----------DIKLNTAVRQVRY-TASGCEVIAV  434 (662)
T ss_dssp             HTTSCGGGBBTTTTTTTGGGCCBSCCEE--ETTCTTHHHHHHTTTC----------EEETTEEEEEEEE-ETTEEEEEEE
T ss_pred             hcCCChhhcCHhhcCCCcccccCCceee--ecCcHHHHHHHHHhcC----------ceecCCeEEEEEE-CCCcEEEEEe
Confidence            447788899988765432  23344443  7999999999998755          6999999999999 7788999876


Q ss_pred             C------CcEEEcCEEEEecChhHHhhCC--cccCCCCCHHHHHHHhcCCCcceeEEEEEeCCCC
Q psy13542         90 D------GTQYSADRILITVSLGVLKSNL--ITFVPPLPPKKLTAIELTNLTSIQQDTLFQIPTE  146 (147)
Q Consensus        90 ~------g~~~~ad~VI~t~P~~~l~~~~--~~f~p~Lp~~~~~ai~~~~~g~~~Kv~l~~~~~~  146 (147)
                      +      |++++||+||+|+|+++|+++.  +.|.|+||+.+.++|++++||.+.||++ .|+++
T Consensus       435 ~~~~~~~~~~~~Ad~VI~tvP~~vL~~l~~~i~f~P~LP~~k~~Ai~~l~~g~~~KV~l-~f~~~  498 (662)
T 2z3y_A          435 NTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVL-CFDRV  498 (662)
T ss_dssp             ESSCTTCEEEEEESEEEECCCHHHHHCSSCSSEEESCCCHHHHHHHHHSEECCCEEEEE-ECSSC
T ss_pred             ecccCCCCeEEEeCEEEECCCHHHHhcccCceEEcCCCCHHHHHHHHhCCccceeEEEE-EcCcc
Confidence            5      5689999999999999999842  4799999999999999999999999999 99876

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=99.74  E-value=3.6e-18  Score=149.44  Aligned_cols=120  Identities=25%  Similarity=0.387  Sum_probs=100.4

Q ss_pred             CCCChhcccccccccccc--CCCCceeeecCCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCC
Q psy13542         13 GSENWFETSARGLDSFTD--LEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCAD   90 (147)
Q Consensus        13 ~g~~~~~~S~~~~~~~~~--~~g~~~~~~~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~   90 (147)
                      .+.+++.+|+..+.....  ..|.+..  ++||+++|+++|++.+          +|++|++|++|.+ .+++|+|++.+
T Consensus       540 ~~~~l~~lSl~~~~~~~~~~~~g~~~~--~~gG~~~L~~aLa~~l----------~I~Lnt~V~~I~~-~~~gV~V~~~~  606 (852)
T 2xag_A          540 NATPLSTLSLKHWDQDDDFEFTGSHLT--VRNGYSCVPVALAEGL----------DIKLNTAVRQVRY-TASGCEVIAVN  606 (852)
T ss_dssp             HTSCTTTBBTTTTTGGGGGCCBSCCEE--ETTCTTHHHHHHTTTC----------CEECSEEEEEEEE-ETTEEEEEEEE
T ss_pred             ccCChHhhhhhhhhhccccccCCceEE--ecCcHHHHHHHHHhCC----------CEEeCCeEEEEEE-cCCcEEEEEee
Confidence            366788888877654322  3344433  7999999999998865          5999999999999 77889998765


Q ss_pred             ------CcEEEcCEEEEecChhHHhhCC--cccCCCCCHHHHHHHhcCCCcceeEEEEEeCCCC
Q psy13542         91 ------GTQYSADRILITVSLGVLKSNL--ITFVPPLPPKKLTAIELTNLTSIQQDTLFQIPTE  146 (147)
Q Consensus        91 ------g~~~~ad~VI~t~P~~~l~~~~--~~f~p~Lp~~~~~ai~~~~~g~~~Kv~l~~~~~~  146 (147)
                            |++++||+||+|+|+++|+++.  +.|.|+||+.+.++|++++||.+.||++ .|+++
T Consensus       607 ~~~~~~g~~i~AD~VIvTvPl~vLk~l~~~I~F~P~LP~~k~~AI~~l~~g~v~KV~L-~F~~~  669 (852)
T 2xag_A          607 TRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVL-CFDRV  669 (852)
T ss_dssp             SSSTTCEEEEEESEEEECCCHHHHHCSSCSSEEESCCCHHHHHHHHHSEECCCEEEEE-ECSSC
T ss_pred             cccCCCCeEEECCEEEECCCHHHHHhhhcccccCCCCCHHHHHHHHcCCccceEEEEE-EcCCc
Confidence                  5689999999999999999842  4799999999999999999999999999 99875

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=99.72  E-value=3.7e-17  Score=135.24  Aligned_cols=120  Identities=29%  Similarity=0.405  Sum_probs=99.9

Q ss_pred             CCChhccccccccccccCCCCceeeecCCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcE
Q psy13542         14 SENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQ   93 (147)
Q Consensus        14 g~~~~~~S~~~~~~~~~~~g~~~~~~~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~   93 (147)
                      |.+++++|+..+...  ..+...+  ++| +++++++|++.+..       ++|++|++|++|.+++++++.|++.+|++
T Consensus       176 g~~~~~~s~~~~~~~--~~~~~~~--~~g-~~~l~~~l~~~l~~-------~~i~~~~~V~~I~~~~~~~v~v~~~~g~~  243 (516)
T 1rsg_A          176 GLDWKLLSAKDTYFG--HQGRNAF--ALN-YDSVVQRIAQSFPQ-------NWLKLSCEVKSITREPSKNVTVNCEDGTV  243 (516)
T ss_dssp             TBCTTTSBHHHHCCC--CSSCCEE--ESC-HHHHHHHHHTTSCG-------GGEETTCCEEEEEECTTSCEEEEETTSCE
T ss_pred             CCChHHCChHHHHhh--ccCcchh--hhC-HHHHHHHHHHhCCC-------CEEEECCEEEEEEEcCCCeEEEEECCCcE
Confidence            666778887665422  3344444  567 99999999999974       37999999999998336679999999989


Q ss_pred             EEcCEEEEecChhHHhhC---------CcccCCCCCHHHHHHHhcCCCcceeEEEEEeCCCC
Q psy13542         94 YSADRILITVSLGVLKSN---------LITFVPPLPPKKLTAIELTNLTSIQQDTLFQIPTE  146 (147)
Q Consensus        94 ~~ad~VI~t~P~~~l~~~---------~~~f~p~Lp~~~~~ai~~~~~g~~~Kv~l~~~~~~  146 (147)
                      ++||+||+|+|+++++..         .+.|.|+||+.+.++|++++||++.||++ .|+++
T Consensus       244 ~~ad~VI~t~p~~~l~~~~~~~~~~~~~i~f~P~Lp~~~~~ai~~~~~~~~~Kv~l-~f~~~  304 (516)
T 1rsg_A          244 YNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIF-EFEEC  304 (516)
T ss_dssp             EEEEEEEECCCHHHHHGGGSSCSCSTTCCEEESCCCHHHHHHTTSSCCCCCEEEEE-EESSC
T ss_pred             EECCEEEECCCHHHhhhccccccccccceEecCCCCHHHHHHHHhCCCCcceEEEE-EeCCC
Confidence            999999999999999853         24899999999999999999999999999 99875

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.71  E-value=3.1e-17  Score=135.63  Aligned_cols=125  Identities=19%  Similarity=0.169  Sum_probs=106.0

Q ss_pred             ccccCCCChhccccccccccccCC-----------CCceeeecCCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEE
Q psy13542          9 NTYDGSENWFETSARGLDSFTDLE-----------GCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKIN   77 (147)
Q Consensus         9 ~~~~~g~~~~~~S~~~~~~~~~~~-----------g~~~~~~~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~   77 (147)
                      ....+|.+++++|+..++.+....           +.... ++.||+++++++|++.++        .+|++|++|++|.
T Consensus       169 ~~~~~g~~~~~~s~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~gG~~~l~~~l~~~lg--------~~i~~~~~V~~i~  239 (520)
T 1s3e_A          169 VNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQER-KFVGGSGQVSERIMDLLG--------DRVKLERPVIYID  239 (520)
T ss_dssp             HHHHHSSCTTTSBHHHHHHHHHTTTCHHHHHCSTTSTTSE-EETTCTHHHHHHHHHHHG--------GGEESSCCEEEEE
T ss_pred             HhhhcCCChHHhHHHHHHHHHhhcCchhhhcccCCCcceE-EEeCCHHHHHHHHHHHcC--------CcEEcCCeeEEEE
Confidence            344567789999988776554321           22222 279999999999999885        3799999999999


Q ss_pred             ecCCCcEEEEeCCCcEEEcCEEEEecChhHHhhCCcccCCCCCHHHHHHHhcCCCcceeEEEEEeCCCC
Q psy13542         78 WEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIELTNLTSIQQDTLFQIPTE  146 (147)
Q Consensus        78 ~~~~~~v~v~~~~g~~~~ad~VI~t~P~~~l~~~~~~f~p~Lp~~~~~ai~~~~~g~~~Kv~l~~~~~~  146 (147)
                      . ++++++|++.+|+++.||+||+|+|+.+++++  .|.|+||+.+.+++++++|+.+.|+++ .|+++
T Consensus       240 ~-~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~l--~~~p~lp~~~~~~i~~~~~~~~~kv~l-~~~~~  304 (520)
T 1s3e_A          240 Q-TRENVLVETLNHEMYEAKYVISAIPPTLGMKI--HFNPPLPMMRNQMITRVPLGSVIKCIV-YYKEP  304 (520)
T ss_dssp             C-SSSSEEEEETTSCEEEESEEEECSCGGGGGGS--EEESCCCHHHHHHTTSCCBCCEEEEEE-ECSSC
T ss_pred             E-CCCeEEEEECCCeEEEeCEEEECCCHHHHcce--eeCCCCCHHHHHHHHhCCCcceEEEEE-EeCCC
Confidence            8 77889999999999999999999999999988  789999999999999999999999999 99875

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=99.69  E-value=6.3e-17  Score=132.67  Aligned_cols=130  Identities=15%  Similarity=0.233  Sum_probs=108.5

Q ss_pred             hhccccCCCChhccccccccccccCCCC---------ceeeecCCcHHHHHHHHHhhCCCCCCCCCc-ceEEcCCceEEE
Q psy13542          7 NQNTYDGSENWFETSARGLDSFTDLEGC---------FGVVWKKGGYGNVFKLLMKQMPGQTPIDLS-KKLLLKKEVTKI   76 (147)
Q Consensus         7 ~~~~~~~g~~~~~~S~~~~~~~~~~~g~---------~~~~~~~gG~~~l~~~l~~~l~~~~~~~~g-~~i~l~~~V~~I   76 (147)
                      ......++.+++++|+..++.+....+.         ..+. ++||+++++++|++.+...     | .+|+++++|++|
T Consensus       209 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gG~~~l~~~l~~~l~~~-----g~~~i~~~~~V~~i  282 (495)
T 2vvm_A          209 AFILLCSGGTLENSSFGEFLHWWAMSGYTYQGCMDCLMSYK-FKDGQSAFARRFWEEAAGT-----GRLGYVFGCPVRSV  282 (495)
T ss_dssp             HHHHHHHSSCTTTSBHHHHHHHHHHTTSSHHHHHHHHHSEE-ETTCHHHHHHHHHHHHHTT-----TCEEEESSCCEEEE
T ss_pred             HHHHHhcCCCcchhhHHHHHHHHHHcCCCHHHHHhhhceEE-eCCCHHHHHHHHHHHhhhc-----CceEEEeCCEEEEE
Confidence            3444566788999999887765432111         1122 6999999999999998754     3 479999999999


Q ss_pred             EecCCCcEEEEeCCCcEEEcCEEEEecChhHHhhCCcccCCCCCHHHHHHHhcCCCcceeEEEEEeCCCC
Q psy13542         77 NWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIELTNLTSIQQDTLFQIPTE  146 (147)
Q Consensus        77 ~~~~~~~v~v~~~~g~~~~ad~VI~t~P~~~l~~~~~~f~p~Lp~~~~~ai~~~~~g~~~Kv~l~~~~~~  146 (147)
                      .. .++++.|++.+|++++||+||+|+|+++++++  .|.|+||+.+.++++.++|+.+.|+++ .|+++
T Consensus       283 ~~-~~~~v~v~~~~g~~~~ad~vI~a~~~~~l~~i--~~~p~lp~~~~~ai~~~~~~~~~kv~l-~~~~~  348 (495)
T 2vvm_A          283 VN-ERDAARVTARDGREFVAKRVVCTIPLNVLSTI--QFSPALSTERISAMQAGHVSMCTKVHA-EVDNK  348 (495)
T ss_dssp             EE-CSSSEEEEETTCCEEEEEEEEECCCGGGGGGS--EEESCCCHHHHHHHHHCCCCCCEEEEE-EESCG
T ss_pred             EE-cCCEEEEEECCCCEEEcCEEEECCCHHHHhhe--eeCCCCCHHHHHHHHhcCCCceeEEEE-EECCc
Confidence            98 77789999999988999999999999999988  789999999999999999999999999 99874

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=99.68  E-value=3.4e-16  Score=135.93  Aligned_cols=121  Identities=34%  Similarity=0.516  Sum_probs=104.0

Q ss_pred             cCCCChhccccccccc---cccCCCCceeeecCCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEe
Q psy13542         12 DGSENWFETSARGLDS---FTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTC   88 (147)
Q Consensus        12 ~~g~~~~~~S~~~~~~---~~~~~g~~~~~~~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~   88 (147)
                      ..|..++++|+..+..   +....|...+  +.+|++.++++|++.+          +|+++++|++|.+ ++++|+|++
T Consensus       500 ~~G~~l~~ls~~~~~~~~~~~~~~G~~~~--~~~G~~~l~~aLa~gl----------~I~l~t~V~~I~~-~~~~v~V~~  566 (776)
T 4gut_A          500 ACGSNLHQVSARSWDHNEFFAQFAGDHTL--LTPGYSVIIEKLAEGL----------DIQLKSPVQCIDY-SGDEVQVTT  566 (776)
T ss_dssp             HHTSCTTSBBTTTTTGGGGSCCCCSCEEE--CTTCTHHHHHHHHTTS----------CEESSCCEEEEEC-SSSSEEEEE
T ss_pred             hcCCChHHcChhhhhhhhhHHhcCCCeEE--ECChHHHHHHHHHhCC----------cEEcCCeeEEEEE-cCCEEEEEE
Confidence            4567788888776543   2234455555  7999999999998755          5999999999999 778899999


Q ss_pred             CCCcEEEcCEEEEecChhHHhhCCcccCCCCCHHHHHHHhcCCCcceeEEEEEeCCCC
Q psy13542         89 ADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIELTNLTSIQQDTLFQIPTE  146 (147)
Q Consensus        89 ~~g~~~~ad~VI~t~P~~~l~~~~~~f~p~Lp~~~~~ai~~~~~g~~~Kv~l~~~~~~  146 (147)
                      .+|+++.||+||+|+|+++++...+.|.|+||+.+.++|++++||.+.|+++ .|+++
T Consensus       567 ~~G~~i~Ad~VIvA~P~~vL~~~~i~f~P~Lp~~~~~ai~~l~~g~~~KV~l-~f~~~  623 (776)
T 4gut_A          567 TDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIAL-QFPYR  623 (776)
T ss_dssp             TTCCEEEESEEEECCCHHHHHTTCSEEESCCCHHHHHHHHHEEEECCEEEEE-ECSSC
T ss_pred             CCCcEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHhCCCeeEEEEEE-ecCcc
Confidence            9998999999999999999987666899999999999999999999999999 99876

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=99.67  E-value=3.5e-16  Score=127.93  Aligned_cols=131  Identities=31%  Similarity=0.414  Sum_probs=101.5

Q ss_pred             CCChhccccccccccc---cCCCCceeeecCCcHHHHHHHHHhhCCCCC-CCC--CcceEEcCCceEEEEecCCCcEEEE
Q psy13542         14 SENWFETSARGLDSFT---DLEGCFGVVWKKGGYGNVFKLLMKQMPGQT-PID--LSKKLLLKKEVTKINWEDPKGVVVT   87 (147)
Q Consensus        14 g~~~~~~S~~~~~~~~---~~~g~~~~~~~~gG~~~l~~~l~~~l~~~~-~~~--~g~~i~l~~~V~~I~~~~~~~v~v~   87 (147)
                      +.+++..|+..+....   ...+...+.+++||+++++++|++.+.... .-+  .|.+|+++++|++|.. .+++++|+
T Consensus       172 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~-~~~~v~v~  250 (472)
T 1b37_A          172 AEPPRVTSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKY-SPGGVTVK  250 (472)
T ss_dssp             SSCGGGBBSTTTSSCHHHHHHCSEEEEECCTTCTTHHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEE-CSSCEEEE
T ss_pred             cccccccchhhccccccccccCCceeeeecCCcHHHHHHHHHHhccccccccccccccEEEcCCEEEEEEE-cCCcEEEE
Confidence            4556666654432111   112223343358999999999999985310 000  0248999999999999 77889999


Q ss_pred             eCCCcEEEcCEEEEecChhHHhhCCcccCCCCCHHHHHHHhcCCCcceeEEEEEeCCCC
Q psy13542         88 CADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIELTNLTSIQQDTLFQIPTE  146 (147)
Q Consensus        88 ~~~g~~~~ad~VI~t~P~~~l~~~~~~f~p~Lp~~~~~ai~~~~~g~~~Kv~l~~~~~~  146 (147)
                      +.+|++++||+||+|+|+.+++.+++.|.|+||+.+.++|++++|+.+.|+++ .|+++
T Consensus       251 ~~~g~~~~ad~vI~a~~~~~l~~~~~~~~p~Lp~~~~~ai~~~~~~~~~kv~l-~~~~~  308 (472)
T 1b37_A          251 TEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTKIFL-KFPRK  308 (472)
T ss_dssp             ETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSEEECEEEEEE-ECSSC
T ss_pred             ECCCCEEEcCEEEEecCHHHhccCCeeECCCCCHHHHHHHHhcCCcceeEEEE-ECCCc
Confidence            99999999999999999999998766899999999999999999999999999 99875

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=99.66  E-value=1.6e-16  Score=128.62  Aligned_cols=123  Identities=16%  Similarity=0.218  Sum_probs=102.2

Q ss_pred             cccCCCChh-ccccccccccccCCCC----------ceeeecCCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEe
Q psy13542         10 TYDGSENWF-ETSARGLDSFTDLEGC----------FGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINW   78 (147)
Q Consensus        10 ~~~~g~~~~-~~S~~~~~~~~~~~g~----------~~~~~~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~   78 (147)
                      ...++.+++ ++|+..++.+....|.          ..+ +++||+++++++|++.++        ++|++|++|++|..
T Consensus       170 ~~~~~~~~~~~~s~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~gG~~~l~~~l~~~lg--------~~i~~~~~V~~i~~  240 (453)
T 2yg5_A          170 AGGMLTKPAHSFSALQAVLMAASAGSFSHLVDEDFILDK-RVIGGMQQVSIRMAEALG--------DDVFLNAPVRTVKW  240 (453)
T ss_dssp             CCCCCCSCTTSSBHHHHHHHHHHTTCHHHHHCHHHHTCE-EETTCTHHHHHHHHHHHG--------GGEECSCCEEEEEE
T ss_pred             HhhcccCCcccccHHHHHHHhccCCcHhhhccCCCcceE-EEcCChHHHHHHHHHhcC--------CcEEcCCceEEEEE
Confidence            345677788 9998877655433221          122 279999999999999885        38999999999998


Q ss_pred             cCCCc-EEEEeCCCcEEEcCEEEEecChhHHhhCCcccCCCCCHHHHHHHhcCCCcceeEEEEEeCCCC
Q psy13542         79 EDPKG-VVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIELTNLTSIQQDTLFQIPTE  146 (147)
Q Consensus        79 ~~~~~-v~v~~~~g~~~~ad~VI~t~P~~~l~~~~~~f~p~Lp~~~~~ai~~~~~g~~~Kv~l~~~~~~  146 (147)
                       ++++ +.|++ +|+++.||+||+|+|+.+++++  .|.|+||+.+.+++++++|+.+.|+++ .|+++
T Consensus       241 -~~~~~v~v~~-~~~~~~ad~VI~a~p~~~~~~l--~~~p~lp~~~~~~i~~~~~~~~~kv~l-~~~~~  304 (453)
T 2yg5_A          241 -NESGATVLAD-GDIRVEASRVILAVPPNLYSRI--SYDPPLPRRQHQMHQHQSLGLVIKVHA-VYETP  304 (453)
T ss_dssp             -ETTEEEEEET-TTEEEEEEEEEECSCGGGGGGS--EEESCCCHHHHHHGGGEEECCEEEEEE-EESSC
T ss_pred             -eCCceEEEEE-CCeEEEcCEEEEcCCHHHHhcC--EeCCCCCHHHHHHHhcCCCcceEEEEE-EECCC
Confidence             6677 88887 6778999999999999999987  789999999999999999999999999 88865

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=99.65  E-value=5.3e-16  Score=127.23  Aligned_cols=95  Identities=21%  Similarity=0.285  Sum_probs=87.5

Q ss_pred             cCCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCc----EEEcCEEEEecChhHHhhCCccc
Q psy13542         40 KKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGT----QYSADRILITVSLGVLKSNLITF  115 (147)
Q Consensus        40 ~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~----~~~ad~VI~t~P~~~l~~~~~~f  115 (147)
                      ++||+++|+++|++.+..        +|++|++|++|.+ .+++|.|++.+|+    +++||+||+|+|+.++..+  .|
T Consensus       236 ~~gG~~~l~~~l~~~l~~--------~i~~~~~V~~I~~-~~~~v~v~~~~~~~~~~~~~ad~vI~t~p~~~~~~i--~f  304 (498)
T 2iid_A          236 IVDGMDKLPTAMYRDIQD--------KVHFNAQVIKIQQ-NDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLI--KF  304 (498)
T ss_dssp             ETTCTTHHHHHHHHHTGG--------GEESSCEEEEEEE-CSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTTS--EE
T ss_pred             eCCcHHHHHHHHHHhccc--------ccccCCEEEEEEE-CCCeEEEEEecCCcccceEEeCEEEECCChHHHhhe--ec
Confidence            799999999999999974        7999999999999 7788999887764    5899999999999999987  89


Q ss_pred             CCCCCHHHHHHHhcCCCcceeEEEEEeCCCC
Q psy13542        116 VPPLPPKKLTAIELTNLTSIQQDTLFQIPTE  146 (147)
Q Consensus       116 ~p~Lp~~~~~ai~~~~~g~~~Kv~l~~~~~~  146 (147)
                      .|+||+.+.+++++++|+.+.||++ .|+++
T Consensus       305 ~p~Lp~~~~~ai~~l~~~~~~kv~l-~~~~~  334 (498)
T 2iid_A          305 NPPLLPKKAHALRSVHYRSGTKIFL-TCTTK  334 (498)
T ss_dssp             ESCCCHHHHHHHHHCCEECEEEEEE-EESSC
T ss_pred             CCCCCHHHHHHHHhCCCcceeEEEE-EeCCC
Confidence            9999999999999999999999999 99865

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.60  E-value=2.5e-15  Score=120.80  Aligned_cols=123  Identities=16%  Similarity=0.183  Sum_probs=101.8

Q ss_pred             ccCCCChhccccccccccccCCCCcee-------eecCCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCc
Q psy13542         11 YDGSENWFETSARGLDSFTDLEGCFGV-------VWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKG   83 (147)
Q Consensus        11 ~~~g~~~~~~S~~~~~~~~~~~g~~~~-------~~~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~   83 (147)
                      ..++.+++++|+..+..+....+....       ..+.+|+..+++.+++.++         +|++|++|++|.+ ++++
T Consensus       166 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~g---------~i~~~~~V~~i~~-~~~~  235 (431)
T 3k7m_X          166 NMLGQPADQASALWMLQLVAAHHYSILGVVLSLDEVFSNGSADLVDAMSQEIP---------EIRLQTVVTGIDQ-SGDV  235 (431)
T ss_dssp             HHHSSCTTTSBHHHHHHHHHHTTSCHHHHHHTCCEEETTCTHHHHHHHHTTCS---------CEESSCCEEEEEC-SSSS
T ss_pred             HhcCCChhhhhHHHHHHHHHhcCCccceeecchhhhcCCcHHHHHHHHHhhCC---------ceEeCCEEEEEEE-cCCe
Confidence            345667788887776554432221110       0259999999999998775         5999999999998 7788


Q ss_pred             EEEEeCCCcEEEcCEEEEecChhHHhhCCcccCCCCCHHHHHHHhcCCCcceeEEEEEeCCCC
Q psy13542         84 VVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIELTNLTSIQQDTLFQIPTE  146 (147)
Q Consensus        84 v~v~~~~g~~~~ad~VI~t~P~~~l~~~~~~f~p~Lp~~~~~ai~~~~~g~~~Kv~l~~~~~~  146 (147)
                      ++|++.+|++++||+||+|+|+++++.+  .|.|+||+.+.++++.+.++...|+.+ .|+++
T Consensus       236 v~v~~~~g~~~~ad~vi~a~~~~~l~~i--~~~p~l~~~~~~~~~~~~~~~~~kv~~-~~~~~  295 (431)
T 3k7m_X          236 VNVTVKDGHAFQAHSVIVATPMNTWRRI--VFTPALPERRRSVIEEGHGGQGLKILI-HVRGA  295 (431)
T ss_dssp             EEEEETTSCCEEEEEEEECSCGGGGGGS--EEESCCCHHHHHHHHHCCCCCEEEEEE-EEESC
T ss_pred             EEEEECCCCEEEeCEEEEecCcchHhhe--eeCCCCCHHHHHHHHhCCCcceEEEEE-EECCC
Confidence            9999999988999999999999999988  899999999999999999999999999 99875

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=99.56  E-value=1.1e-14  Score=119.15  Aligned_cols=94  Identities=19%  Similarity=0.282  Sum_probs=85.2

Q ss_pred             cCCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCC---cEEEcCEEEEecChhHHhhCCcccC
Q psy13542         40 KKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADG---TQYSADRILITVSLGVLKSNLITFV  116 (147)
Q Consensus        40 ~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g---~~~~ad~VI~t~P~~~l~~~~~~f~  116 (147)
                      ++||+++|+++|++.++.       ++|++|++|++|.+ .+++|+|++.+|   ++++||+||+|+|+.+++.+  .| 
T Consensus       234 ~~gG~~~l~~~l~~~l~~-------~~i~~~~~V~~i~~-~~~~v~v~~~~g~~~~~~~ad~vI~a~p~~~l~~l--~~-  302 (489)
T 2jae_A          234 PVGGMDRIYYAFQDRIGT-------DNIVFGAEVTSMKN-VSEGVTVEYTAGGSKKSITADYAICTIPPHLVGRL--QN-  302 (489)
T ss_dssp             ETTCTTHHHHHHHHHHCG-------GGEETTCEEEEEEE-ETTEEEEEEEETTEEEEEEESEEEECSCHHHHTTS--EE-
T ss_pred             ecCCHHHHHHHHHHhcCC-------CeEEECCEEEEEEE-cCCeEEEEEecCCeEEEEECCEEEECCCHHHHHhC--cc-
Confidence            799999999999999973       27999999999998 778899988876   68999999999999999987  45 


Q ss_pred             CCCCHHHHHHHhcCCCcceeEEEEEeCCCC
Q psy13542        117 PPLPPKKLTAIELTNLTSIQQDTLFQIPTE  146 (147)
Q Consensus       117 p~Lp~~~~~ai~~~~~g~~~Kv~l~~~~~~  146 (147)
                       +||+.+.+++++++|+++.|+++ .|+++
T Consensus       303 -~l~~~~~~~l~~~~~~~~~kv~l-~~~~~  330 (489)
T 2jae_A          303 -NLPGDVLTALKAAKPSSSGKLGI-EYSRR  330 (489)
T ss_dssp             -CCCHHHHHHHHTEECCCEEEEEE-EESSC
T ss_pred             -CCCHHHHHHHHhCCCccceEEEE-EeCCC
Confidence             79999999999999999999999 99864

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=99.53  E-value=1.1e-14  Score=125.37  Aligned_cols=121  Identities=11%  Similarity=0.050  Sum_probs=89.6

Q ss_pred             CChhccccccccccccCCCCceeeecCCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceE--EEEecCCCc-------EE
Q psy13542         15 ENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVT--KINWEDPKG-------VV   85 (147)
Q Consensus        15 ~~~~~~S~~~~~~~~~~~g~~~~~~~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~--~I~~~~~~~-------v~   85 (147)
                      .+..+.|+..++.+........+..+.||+++|+++|++.+..      |+.|+++++|+  +|.+ .+++       |+
T Consensus       317 ~~~~~~S~le~L~~~~~~~~~~~~~i~GG~~~L~~aLa~~l~~------g~~I~l~~~V~~~~I~~-~~~g~~~~~~~V~  389 (721)
T 3ayj_A          317 KPLYNISLVEMMRLILWDYSNEYTLPVTENVEFIRNLFLKAQN------VGAGKLVVQVRQERVAN-ACHSGTASARAQL  389 (721)
T ss_dssp             GGGTTBBHHHHHHHHHTTTTCEECCSSSSTHHHHHHHHHHHHH------HTTTSEEEEEECEEEEE-EEECSSSSCCEEE
T ss_pred             CCccchhHHHHHHHHhcCCccceeEECCcHHHHHHHHHHhccc------CCceEeCCEEEeeeEEE-CCCCCccccceEE
Confidence            3445677766555442221112222799999999999999821      12799999999  9998 4333       88


Q ss_pred             E-EeCCCc--EEEcCEEEEecChhHHhh----CCcc-------c--------------CCC-C-C-------HHHHHHHh
Q psy13542         86 V-TCADGT--QYSADRILITVSLGVLKS----NLIT-------F--------------VPP-L-P-------PKKLTAIE  128 (147)
Q Consensus        86 v-~~~~g~--~~~ad~VI~t~P~~~l~~----~~~~-------f--------------~p~-L-p-------~~~~~ai~  128 (147)
                      | .+.+|+  +++||+||+|+|+++|..    ..+.       |              .|| | |       +++.+||+
T Consensus       390 V~~~~~G~~~~~~aD~VIvTvP~~~L~~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~pplLlp~~~~~~~~~~~~Ai~  469 (721)
T 3ayj_A          390 LSYDSHNAVHSEAYDFVILAVPHDQLTPIVSRSGFEHAASQNLGDAGLGLETHTYNQVYPPLLLSDSSPAANARIVTAIG  469 (721)
T ss_dssp             EEEETTCCEEEEEESEEEECSCHHHHHHHHSSSCSSCEEEEEESCGGGTCCCEEEEEEBCSSCCCSSCHHHHHHHHHHHH
T ss_pred             EEEecCCceEEEEcCEEEECCCHHHHhhccccccccccccccccccccccccccccccCCcccCCcccccccHHHHHHHH
Confidence            8 456776  799999999999999964    2124       3              344 6 9       99999999


Q ss_pred             cCCCcceeEEEEEeC
Q psy13542        129 LTNLTSIQQDTLFQI  143 (147)
Q Consensus       129 ~~~~g~~~Kv~l~~~  143 (147)
                      +++|+...||++ +|
T Consensus       470 ~l~~~~s~Kv~l-~~  483 (721)
T 3ayj_A          470 QLHMARSSKVFA-TV  483 (721)
T ss_dssp             TCCEECEEEEEE-EE
T ss_pred             hcCcccceEEEE-EE
Confidence            999999999999 99

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.49  E-value=2.3e-13  Score=109.95  Aligned_cols=92  Identities=17%  Similarity=0.213  Sum_probs=81.4

Q ss_pred             cCCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecChhHHhhCCcccCCCC
Q psy13542         40 KKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPL  119 (147)
Q Consensus        40 ~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~~~l~~~~~~f~p~L  119 (147)
                      ++||++.|+++|++.+..       ++|+++++|++|.. ++++++|++.+|++++||+||+|+|+.+++++  .+.|+ 
T Consensus       230 ~~~g~~~l~~~l~~~l~~-------~~i~~~~~V~~i~~-~~~~~~v~~~~g~~~~ad~vi~a~p~~~~~~l--~~~~~-  298 (470)
T 3i6d_A          230 LSTGLQTLVEEIEKQLKL-------TKVYKGTKVTKLSH-SGSCYSLELDNGVTLDADSVIVTAPHKAAAGM--LSELP-  298 (470)
T ss_dssp             ETTCTHHHHHHHHHTCCS-------EEEECSCCEEEEEE-CSSSEEEEESSSCEEEESEEEECSCHHHHHHH--TTTST-
T ss_pred             eCChHHHHHHHHHHhcCC-------CEEEeCCceEEEEE-cCCeEEEEECCCCEEECCEEEECCCHHHHHHH--cCCch-
Confidence            799999999999999974       38999999999999 77889999999989999999999999999987  33442 


Q ss_pred             CHHHHHHHhcCCCcceeEEEEEeCCCC
Q psy13542        120 PPKKLTAIELTNLTSIQQDTLFQIPTE  146 (147)
Q Consensus       120 p~~~~~ai~~~~~g~~~Kv~l~~~~~~  146 (147)
                         ..+++++++|+++.|+++ .|+++
T Consensus       299 ---~~~~~~~~~~~~~~~v~l-~~~~~  321 (470)
T 3i6d_A          299 ---AISHLKNMHSTSVANVAL-GFPEG  321 (470)
T ss_dssp             ---THHHHHTCEEEEEEEEEE-EESST
T ss_pred             ---hhHHHhcCCCCceEEEEE-EECch
Confidence               367899999999999999 98875

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.48  E-value=7.3e-14  Score=113.71  Aligned_cols=93  Identities=11%  Similarity=0.117  Sum_probs=82.6

Q ss_pred             cCCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEe---CCCcEEEcCEEEEecChhHHhhCCcccC
Q psy13542         40 KKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTC---ADGTQYSADRILITVSLGVLKSNLITFV  116 (147)
Q Consensus        40 ~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~---~~g~~~~ad~VI~t~P~~~l~~~~~~f~  116 (147)
                      ++||+++|+++|++.++        ++|+++++|++|.. +++++.|++   .+|++++||+||+|+|+..+.++    .
T Consensus       233 ~~gG~~~l~~~l~~~lg--------~~i~~~~~V~~i~~-~~~~~~v~~~~~~~g~~~~ad~vV~a~~~~~~~~l----l  299 (478)
T 2ivd_A          233 FDGGLQVLIDALAASLG--------DAAHVGARVEGLAR-EDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAKL----L  299 (478)
T ss_dssp             ETTCTHHHHHHHHHHHG--------GGEESSEEEEEEEC-C--CCEEEEEETTEEEEEECSEEEECSCHHHHHHH----H
T ss_pred             ECCCHHHHHHHHHHHhh--------hhEEcCCEEEEEEe-cCCeEEEEEeecCCCceEEcCEEEECCCHHHHHHH----h
Confidence            79999999999999985        37999999999998 677788888   77888999999999999999875    4


Q ss_pred             CCCCHHHHHHHhcCCCcceeEEEEEeCCCC
Q psy13542        117 PPLPPKKLTAIELTNLTSIQQDTLFQIPTE  146 (147)
Q Consensus       117 p~Lp~~~~~ai~~~~~g~~~Kv~l~~~~~~  146 (147)
                      |++|+++.+++++++++.+.|+++ .|+++
T Consensus       300 ~~l~~~~~~~l~~~~~~~~~~v~l-~~~~~  328 (478)
T 2ivd_A          300 RPLDDALAALVAGIAYAPIAVVHL-GFDAG  328 (478)
T ss_dssp             TTTCHHHHHHHHTCCBCCEEEEEE-EECTT
T ss_pred             hccCHHHHHHHhcCCCCcEEEEEE-EEccc
Confidence            789999999999999999999999 88764

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.46  E-value=2.6e-13  Score=106.31  Aligned_cols=97  Identities=15%  Similarity=0.146  Sum_probs=87.9

Q ss_pred             cCCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecChhHHhhCCcccCCCC
Q psy13542         40 KKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPL  119 (147)
Q Consensus        40 ~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~~~l~~~~~~f~p~L  119 (147)
                      ..+|+++++++|++.++.        +|+++++|++|.. ++++++|++.+|+++.||+||+|+|++.+.+++..+.|+|
T Consensus       107 ~~~g~~~l~~~l~~~~g~--------~i~~~~~V~~i~~-~~~~~~v~~~~g~~~~ad~vV~A~p~~~~~~ll~~~~~~l  177 (342)
T 3qj4_A          107 APQGISSIIKHYLKESGA--------EVYFRHRVTQINL-RDDKWEVSKQTGSPEQFDLIVLTMPVPEILQLQGDITTLI  177 (342)
T ss_dssp             CTTCTTHHHHHHHHHHTC--------EEESSCCEEEEEE-CSSSEEEEESSSCCEEESEEEECSCHHHHTTCBSTHHHHS
T ss_pred             cCCCHHHHHHHHHHhcCC--------EEEeCCEEEEEEE-cCCEEEEEECCCCEEEcCEEEECCCHHHHHHHhccccccc
Confidence            689999999999998853        8999999999999 7888999999998899999999999999999865566789


Q ss_pred             CHHHHHHHhcCCCcceeEEEEEeCCCC
Q psy13542        120 PPKKLTAIELTNLTSIQQDTLFQIPTE  146 (147)
Q Consensus       120 p~~~~~ai~~~~~g~~~Kv~l~~~~~~  146 (147)
                      |++..+++++++|+++.|+++ .|+++
T Consensus       178 ~~~~~~~l~~~~~~~~~~v~l-~~~~~  203 (342)
T 3qj4_A          178 SECQRQQLEAVSYSSRYALGL-FYEAG  203 (342)
T ss_dssp             CHHHHHHHHTCCBCCEEEEEE-ECSSC
T ss_pred             CHHHHHHHhcCCccccEEEEE-EECCC
Confidence            999999999999999999999 99853

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.44  E-value=3.3e-13  Score=109.91  Aligned_cols=90  Identities=14%  Similarity=0.131  Sum_probs=80.1

Q ss_pred             cCCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecChhHHhhCCcccCCCC
Q psy13542         40 KKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPL  119 (147)
Q Consensus        40 ~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~~~l~~~~~~f~p~L  119 (147)
                      ++||+++|+++|++.+...       +|+++++|++|.. .+++++|++.+| +++||+||+|+|+.+++++  .+.|++
T Consensus       231 ~~~G~~~l~~~l~~~l~~~-------~i~~~~~V~~i~~-~~~~~~v~~~~g-~~~ad~vV~a~p~~~~~~l--l~~~~~  299 (475)
T 3lov_A          231 LETGLESLIERLEEVLERS-------EIRLETPLLAISR-EDGRYRLKTDHG-PEYADYVLLTIPHPQVVQL--LPDAHL  299 (475)
T ss_dssp             ETTCHHHHHHHHHHHCSSC-------EEESSCCCCEEEE-ETTEEEEECTTC-CEEESEEEECSCHHHHHHH--CTTSCC
T ss_pred             eCChHHHHHHHHHhhccCC-------EEEcCCeeeEEEE-eCCEEEEEECCC-eEECCEEEECCCHHHHHHH--cCccCH
Confidence            7999999999999999742       8999999999998 777899999999 8999999999999999987  445543


Q ss_pred             CHHHHHHHhcCCCcceeEEEEEeCCCC
Q psy13542        120 PPKKLTAIELTNLTSIQQDTLFQIPTE  146 (147)
Q Consensus       120 p~~~~~ai~~~~~g~~~Kv~l~~~~~~  146 (147)
                           +++++++|+++.|+++ .|+++
T Consensus       300 -----~~~~~~~~~~~~~v~l-~~~~~  320 (475)
T 3lov_A          300 -----PELEQLTTHSTATVTM-IFDQQ  320 (475)
T ss_dssp             -----HHHHTCCEEEEEEEEE-EEECC
T ss_pred             -----HHHhcCCCCeEEEEEE-EECCc
Confidence                 7889999999999999 88865

>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=99.38  E-value=4.7e-13  Score=92.87  Aligned_cols=52  Identities=19%  Similarity=0.317  Sum_probs=49.7

Q ss_pred             cEEEcCEEEEecChhHHhhCCcccCCCCCHHHHHHHhcCCCcceeEEEEEeCCCC
Q psy13542         92 TQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIELTNLTSIQQDTLFQIPTE  146 (147)
Q Consensus        92 ~~~~ad~VI~t~P~~~l~~~~~~f~p~Lp~~~~~ai~~~~~g~~~Kv~l~~~~~~  146 (147)
                      ++++||+||||+|+++|+.+  .|.|+||+.+.++|++++||..+|+++ +|+++
T Consensus         4 ~~~~Ad~VIvTvP~~vL~~I--~F~P~LP~~k~~Ai~~l~~g~~~Kv~l-~f~~~   55 (130)
T 2e1m_B            4 QTWTGDLAIVTIPFSSLRFV--KVTPPFSYKKRRAVIETHYDQATKVLL-EFSRR   55 (130)
T ss_dssp             EEEEESEEEECSCHHHHTTS--EEESCCCHHHHHHHHHCCEECEEEEEE-EESSC
T ss_pred             eEEEcCEEEEcCCHHHHhcC--cCCCCCCHHHHHHHHhCCCcceeEEEE-EECCC
Confidence            47899999999999999987  999999999999999999999999999 99886

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=99.36  E-value=3.7e-12  Score=104.97  Aligned_cols=126  Identities=15%  Similarity=0.099  Sum_probs=97.1

Q ss_pred             cccCCCChhccccccccccccC--------------C----C-Cceeee-cCCcHHHHHHHHHhhCCCCCCCCCcceEEc
Q psy13542         10 TYDGSENWFETSARGLDSFTDL--------------E----G-CFGVVW-KKGGYGNVFKLLMKQMPGQTPIDLSKKLLL   69 (147)
Q Consensus        10 ~~~~g~~~~~~S~~~~~~~~~~--------------~----g-~~~~~~-~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l   69 (147)
                      ...|+.+++++|+.++......              .    + ...+.| +.||+++|+++|++.+...       +|++
T Consensus       161 ~~v~~~~~~~ls~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~f~yp~~gG~~~l~~~la~~l~~~-------~i~~  233 (484)
T 4dsg_A          161 FKVWAVPPCLMSTEWVEERVAPVDLERIRRNIQENRDDLGWGPNATFRFPQRGGTGIIYQAIKEKLPSE-------KLTF  233 (484)
T ss_dssp             HHHHSSCGGGBCSSSCTTTSCCCCHHHHHHHHHHTCCCCCCSTTSEEEEESSSCTHHHHHHHHHHSCGG-------GEEE
T ss_pred             hhhcCCCHHHhcHHHHhccccCCCHHHHHHHHhhcccccCCCccceEEeecCCCHHHHHHHHHhhhhhC-------eEEE
Confidence            3467889999999765433221              0    1 112333 4699999999999999753       7999


Q ss_pred             C--CceEEEEecCCCcEEEEeCCCcEEEcCEEEEecChhHHhhCCcccCCCCCHHHHHHHhcCCCcceeEEEEEeCCCC
Q psy13542         70 K--KEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIELTNLTSIQQDTLFQIPTE  146 (147)
Q Consensus        70 ~--~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~~~l~~~~~~f~p~Lp~~~~~ai~~~~~g~~~Kv~l~~~~~~  146 (147)
                      +  ++|++|.. ++++|  ++.+|+++.||+||+|+|+..+.+++....|++|++..+++++++|.++.++.+ .|+.+
T Consensus       234 ~~~~~V~~I~~-~~~~v--~~~~G~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~~~~~l~~l~y~s~~~v~l-~~~~~  308 (484)
T 4dsg_A          234 NSGFQAIAIDA-DAKTI--TFSNGEVVSYDYLISTVPFDNLLRMTKGTGFKGYDEWPAIADKMVYSSTNVIGI-GVKGT  308 (484)
T ss_dssp             CGGGCEEEEET-TTTEE--EETTSCEEECSEEEECSCHHHHHHHEECSSCTTGGGHHHHHHHCCEEEEEEEEE-EEESC
T ss_pred             CCCceeEEEEe-cCCEE--EECCCCEEECCEEEECCCHHHHHHHhhccCCCCCHHHHHHHhCCCcCceEEEEE-EEcCC
Confidence            9  56999998 66665  457888999999999999999998733234568999999999999999999999 77653

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.35  E-value=7.4e-13  Score=107.61  Aligned_cols=95  Identities=17%  Similarity=0.233  Sum_probs=82.3

Q ss_pred             cCCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCc-EEEEeCCCcEEEcCEEEEecChhHHhhCCcccCCC
Q psy13542         40 KKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKG-VVVTCADGTQYSADRILITVSLGVLKSNLITFVPP  118 (147)
Q Consensus        40 ~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~-v~v~~~~g~~~~ad~VI~t~P~~~l~~~~~~f~p~  118 (147)
                      ++||+++|+++|++.+...     |++|+++++|++|.. .+++ +.|++. +.++.||+||+|+|+..++++    .|+
T Consensus       229 ~~gG~~~l~~~l~~~l~~~-----g~~i~~~~~V~~i~~-~~~~~~~v~~~-~~~~~ad~vv~a~p~~~~~~l----l~~  297 (477)
T 3nks_A          229 LRGGLEMLPQALETHLTSR-----GVSVLRGQPVCGLSL-QAEGRWKVSLR-DSSLEADHVISAIPASVLSEL----LPA  297 (477)
T ss_dssp             ETTCTTHHHHHHHHHHHHT-----TCEEECSCCCCEEEE-CGGGCEEEECS-SCEEEESEEEECSCHHHHHHH----SCG
T ss_pred             ECCCHHHHHHHHHHHHHhc-----CCEEEeCCEEEEEEE-cCCceEEEEEC-CeEEEcCEEEECCCHHHHHHh----ccc
Confidence            7999999999999999654     469999999999998 6666 888775 448999999999999999976    566


Q ss_pred             CCHHHHHHHhcCCCcceeEEEEEeCCCC
Q psy13542        119 LPPKKLTAIELTNLTSIQQDTLFQIPTE  146 (147)
Q Consensus       119 Lp~~~~~ai~~~~~g~~~Kv~l~~~~~~  146 (147)
                      ++++..+++++++|+++.++.+ .|+++
T Consensus       298 ~~~~~~~~l~~~~~~~~~~v~l-~~~~~  324 (477)
T 3nks_A          298 EAAPLARALSAITAVSVAVVNL-QYQGA  324 (477)
T ss_dssp             GGHHHHHHHHTCCEEEEEEEEE-EETTC
T ss_pred             cCHHHHHHHhcCCCCcEEEEEE-EECCC
Confidence            6778889999999999999999 88865

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=99.26  E-value=5.2e-12  Score=103.50  Aligned_cols=94  Identities=17%  Similarity=0.149  Sum_probs=74.7

Q ss_pred             cCCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCc------EEEEeC--CC---cEEEcCEEEEecChhHH
Q psy13542         40 KKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKG------VVVTCA--DG---TQYSADRILITVSLGVL  108 (147)
Q Consensus        40 ~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~------v~v~~~--~g---~~~~ad~VI~t~P~~~l  108 (147)
                      ++||+++|+++|++.++..       +|++|++|++|.. .+++      +.|++.  +|   ++++||+||+|+|+..+
T Consensus       238 ~~GG~~~l~~~l~~~l~~~-------~i~~~~~V~~I~~-~~~~~~~~~~~~v~~~~~~g~~~~~~~ad~VI~a~p~~~l  309 (504)
T 1sez_A          238 FLGGMQTLTDAICKDLRED-------ELRLNSRVLELSC-SCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDV  309 (504)
T ss_dssp             ETTCTHHHHHHHHTTSCTT-------TEETTCCEEEEEE-ECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHH
T ss_pred             eCcHHHHHHHHHHhhcccc-------eEEcCCeEEEEEe-cCCCCcccceEEEEEcCCCCccceeEECCEEEECCCHHHH
Confidence            6999999999999998632       7999999999998 5555      666654  56   57899999999999999


Q ss_pred             hhCCc-ccCCCCCHHHHHHHhcCCCcceeEEEEEeCCC
Q psy13542        109 KSNLI-TFVPPLPPKKLTAIELTNLTSIQQDTLFQIPT  145 (147)
Q Consensus       109 ~~~~~-~f~p~Lp~~~~~ai~~~~~g~~~Kv~l~~~~~  145 (147)
                      ++++. ...++++++.   ++++.++++.|+++ .|++
T Consensus       310 ~~ll~~~~~~~~~~~~---l~~~~~~~~~~v~l-~~~~  343 (504)
T 1sez_A          310 KSMKIAKRGNPFLLNF---IPEVDYVPLSVVIT-TFKR  343 (504)
T ss_dssp             HTSEEESSSSBCCCTT---SCCCCEEEEEEEEE-EEEG
T ss_pred             HHHhhcccCCcccHHH---HhcCCCCceEEEEE-EEch
Confidence            98732 1124455543   77889999999999 8764

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.25  E-value=1.4e-11  Score=98.64  Aligned_cols=125  Identities=12%  Similarity=0.057  Sum_probs=95.3

Q ss_pred             ccCCCChhcccccccccccc---CCCCceeeecCCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEE-E
Q psy13542         11 YDGSENWFETSARGLDSFTD---LEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVV-V   86 (147)
Q Consensus        11 ~~~g~~~~~~S~~~~~~~~~---~~g~~~~~~~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~-v   86 (147)
                      ..++.+++++|+..+.....   ..+...+  +.||++.++++|++.+...     |++|+++++|++|.. ++++++ |
T Consensus       161 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~gG~~~l~~~l~~~~~~~-----G~~i~~~~~V~~i~~-~~~~~~gv  232 (425)
T 3ka7_A          161 WALSLKSDEVPVEEVFEIIENMYRFGGTGI--PEGGCKGIIDALETVISAN-----GGKIHTGQEVSKILI-ENGKAAGI  232 (425)
T ss_dssp             HHHSSCGGGSBHHHHHHHHHHHHHHCSCEE--ETTSHHHHHHHHHHHHHHT-----TCEEECSCCEEEEEE-ETTEEEEE
T ss_pred             HHhCCCcccchHHHHHHHHHHHHhcCCccc--cCCCHHHHHHHHHHHHHHc-----CCEEEECCceeEEEE-ECCEEEEE
Confidence            34677888888865433221   1233333  6999999999999998754     569999999999998 667776 6


Q ss_pred             EeCCCcEEEcCEEEEecChhHHhhCCcccCCCC--CHHHHHHHhcCCCcceeEEEEEeCCCC
Q psy13542         87 TCADGTQYSADRILITVSLGVLKSNLITFVPPL--PPKKLTAIELTNLTSIQQDTLFQIPTE  146 (147)
Q Consensus        87 ~~~~g~~~~ad~VI~t~P~~~l~~~~~~f~p~L--p~~~~~ai~~~~~g~~~Kv~l~~~~~~  146 (147)
                      +++ |+++.||+||+|+|+..+.+++. ..+.+  |++..+.++++.++...++++ .|+++
T Consensus       233 ~~~-g~~~~ad~VV~a~~~~~~~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~v~l-~~~~~  291 (425)
T 3ka7_A          233 IAD-DRIHDADLVISNLGHAATAVLCS-EALSKEADAAYFKMVGTLQPSAGIKICL-AADEP  291 (425)
T ss_dssp             EET-TEEEECSEEEECSCHHHHHHHTT-TTCCTTTTHHHHHHHHHCCCBEEEEEEE-EESSC
T ss_pred             EEC-CEEEECCEEEECCCHHHHHHhcC-CcccccCCHHHHHHhhCcCCCceEEEEe-ecCCC
Confidence            664 77899999999999999987632 12233  888889999999999999998 87764

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.19  E-value=2.7e-11  Score=99.07  Aligned_cols=118  Identities=14%  Similarity=0.183  Sum_probs=65.5

Q ss_pred             CCChhccccccccccccCCCCceeeecCCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEE-EEeCCCc
Q psy13542         14 SENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVV-VTCADGT   92 (147)
Q Consensus        14 g~~~~~~S~~~~~~~~~~~g~~~~~~~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~-v~~~~g~   92 (147)
                      +.+.+..+++.+..+....+..++  ++||+++|+++|++.+.+.     |++|++|++|++|.. ++++++ |++.||+
T Consensus       192 ~~p~~~~~~~~~~~~~~~~~G~~~--p~GG~~~l~~aL~~~~~~~-----Gg~I~~~~~V~~I~~-~~~~~~gV~~~~g~  263 (501)
T 4dgk_A          192 GNPFATSSIYTLIHALEREWGVWF--PRGGTGALVQGMIKLFQDL-----GGEVVLNARVSHMET-TGNKIEAVHLEDGR  263 (501)
T ss_dssp             SCC--CCCTHHHHHHHHSCCCEEE--ETTHHHHHHHHHHHHHHHT-----TCEEECSCCEEEEEE-ETTEEEEEEETTSC
T ss_pred             CCcchhhhhhhhhhhhhccCCeEE--eCCCCcchHHHHHHHHHHh-----CCceeeecceeEEEe-eCCeEEEEEecCCc
Confidence            333333333333333333333343  7999999999999998754     679999999999998 667765 8899999


Q ss_pred             EEEcCEEEEecChhHHhhCCcccCCCCCHHHHHHHhcCCCc-ceeEEEE
Q psy13542         93 QYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIELTNLT-SIQQDTL  140 (147)
Q Consensus        93 ~~~ad~VI~t~P~~~l~~~~~~f~p~Lp~~~~~ai~~~~~g-~~~Kv~l  140 (147)
                      ++.||+||+++++..+...+.. ..+++.+..+.++...++ +..++++
T Consensus       264 ~~~ad~VV~~a~~~~~~~~Ll~-~~~~~~~~~~~~~~~~~~~s~~~~~~  311 (501)
T 4dgk_A          264 RFLTQAVASNADVVHTYRDLLS-QHPAAVKQSNKLQTKRMSNSLFVLYF  311 (501)
T ss_dssp             EEECSCEEECCC----------------------------CCEEEEEEE
T ss_pred             EEEcCEEEECCCHHHHHHHhcc-ccccchhhhhhhhccccCCceeEEEe
Confidence            9999999999987765443221 223555556667777664 3445554

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.17  E-value=6.3e-11  Score=95.09  Aligned_cols=122  Identities=22%  Similarity=0.201  Sum_probs=94.1

Q ss_pred             cCCCChhcccccccccccc---CCCCceeeecCCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEe
Q psy13542         12 DGSENWFETSARGLDSFTD---LEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTC   88 (147)
Q Consensus        12 ~~g~~~~~~S~~~~~~~~~---~~g~~~~~~~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~   88 (147)
                      .++.+++++|+..+.....   ..+...+  +.||++.++++|++.+...     |++|+++++|++|.. +++++ | +
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~gG~~~l~~~l~~~~~~~-----G~~i~~~~~V~~i~~-~~~~v-V-~  224 (421)
T 3nrn_A          155 ADSVSLSDLTALELAKEIRAALRWGGPGL--IRGGCKAVIDELERIIMEN-----KGKILTRKEVVEINI-EEKKV-Y-T  224 (421)
T ss_dssp             HHSSCGGGSBHHHHHHHHHHHHHHCSCEE--ETTCHHHHHHHHHHHHHTT-----TCEEESSCCEEEEET-TTTEE-E-E
T ss_pred             hcCCCcccCCHHHHHHHHHHHhhcCCcce--ecCCHHHHHHHHHHHHHHC-----CCEEEcCCeEEEEEE-ECCEE-E-E
Confidence            3567788888754433221   1223333  7999999999999999754     579999999999998 77788 6 4


Q ss_pred             CCCcEEEcCEEEEecChhHHhhCCcccCCCCCHHHHHHHhcCCCcceeEEEEEeCCCC
Q psy13542         89 ADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIELTNLTSIQQDTLFQIPTE  146 (147)
Q Consensus        89 ~~g~~~~ad~VI~t~P~~~l~~~~~~f~p~Lp~~~~~ai~~~~~g~~~Kv~l~~~~~~  146 (147)
                      .+|+++.||+||+|+|+..+.+++.  .+.+|++..++++++.+....++.+ .++++
T Consensus       225 ~~g~~~~ad~Vv~a~~~~~~~~ll~--~~~~~~~~~~~~~~~~~~~~~~v~l-~~~~~  279 (421)
T 3nrn_A          225 RDNEEYSFDVAISNVGVRETVKLIG--RDYFDRDYLKQVDSIEPSEGIKFNL-AVPGE  279 (421)
T ss_dssp             TTCCEEECSEEEECSCHHHHHHHHC--GGGSCHHHHHHHHTCCCCCEEEEEE-EEESS
T ss_pred             eCCcEEEeCEEEECCCHHHHHHhcC--cccCCHHHHHHHhCCCCCceEEEEE-EEcCC
Confidence            5677999999999999999987521  2458888889999999998889888 76653

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.06  E-value=6.3e-10  Score=90.82  Aligned_cols=119  Identities=17%  Similarity=0.148  Sum_probs=89.2

Q ss_pred             ccCCCChhccccccccccccC---------------C---CCc-eee-ecCCcHHHHHHHHHhhCCCCCCCCCcceEEcC
Q psy13542         11 YDGSENWFETSARGLDSFTDL---------------E---GCF-GVV-WKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLK   70 (147)
Q Consensus        11 ~~~g~~~~~~S~~~~~~~~~~---------------~---g~~-~~~-~~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~   70 (147)
                      ..++.+++++|+.++......               .   +.+ .+. +++||+++++++|++.+...     |++|++|
T Consensus       168 ~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~-----g~~i~~~  242 (513)
T 4gde_A          168 KVWAVPTTKMQCAWLGERVAAPNLKAVTTNVILGKTAGNWGPNATFRFPARGGTGGIWIAVANTLPKE-----KTRFGEK  242 (513)
T ss_dssp             HHHSSCGGGBCSGGGCSSCCCCCHHHHHHHHHHTCCCCSCBTTBEEEEESSSHHHHHHHHHHHTSCGG-----GEEESGG
T ss_pred             hhccCChHHhhHHHHHHhhcccchhhhhhhhhhcccccccccccceeecccCCHHHHHHHHHHHHHhc-----Ceeeecc
Confidence            356778888888765432210               1   111 111 25899999999999999865     6799999


Q ss_pred             CceEEEEecCCCcEEEEeCCCcEEEcCEEEEecChhHHhhCCcccCCCCCHHHHHHHhcCCCcceeEEEEEeCC
Q psy13542         71 KEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIELTNLTSIQQDTLFQIP  144 (147)
Q Consensus        71 ~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~~~l~~~~~~f~p~Lp~~~~~ai~~~~~g~~~Kv~l~~~~  144 (147)
                      ++|++|.. ++++  +++.+|+++.||+||+|+|++.|.++    .+  ++....+...++|.++..+.+ .|+
T Consensus       243 ~~V~~I~~-~~~~--v~~~~G~~~~ad~vI~t~P~~~l~~~----l~--~~~~~~~~~~l~y~~~~~v~l-~~~  306 (513)
T 4gde_A          243 GKVTKVNA-NNKT--VTLQDGTTIGYKKLVSTMAVDFLAEA----MN--DQELVGLTKQLFYSSTHVIGV-GVR  306 (513)
T ss_dssp             GCEEEEET-TTTE--EEETTSCEEEEEEEEECSCHHHHHHH----TT--CHHHHHHHTTCCEEEEEEEEE-EEE
T ss_pred             eEEEEEEc-cCCE--EEEcCCCEEECCEEEECCCHHHHHHh----cC--chhhHhhhhcccCCceEEEEE-EEe
Confidence            99999998 6554  55789999999999999999999976    22  345677888999998888877 553

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=99.01  E-value=1.3e-09  Score=87.35  Aligned_cols=106  Identities=13%  Similarity=0.106  Sum_probs=78.9

Q ss_pred             cCCCChhccccccccccccC-------CCCceeeecCCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcE
Q psy13542         12 DGSENWFETSARGLDSFTDL-------EGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGV   84 (147)
Q Consensus        12 ~~g~~~~~~S~~~~~~~~~~-------~g~~~~~~~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v   84 (147)
                      .++ +++++|+..++.+...       .+..+.  +.||+++++++|.+.+..        +|++|++|++|.. +++++
T Consensus       169 ~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~l~~~l~~~l~~--------~v~~~~~V~~i~~-~~~~v  236 (424)
T 2b9w_A          169 GYG-HFDNVPAAYVLKYLDFVTMMSFAKGDLWT--WADGTQAMFEHLNATLEH--------PAERNVDITRITR-EDGKV  236 (424)
T ss_dssp             CCC-CTTTSBHHHHHHHSCHHHHHHHHHTCCBC--CTTCHHHHHHHHHHHSSS--------CCBCSCCEEEEEC-CTTCE
T ss_pred             ccC-ChHhcCHHHHHHhhhHhhhhcccCCceEE--eCChHHHHHHHHHHhhcc--------eEEcCCEEEEEEE-ECCEE
Confidence            344 4577777665544431       233332  689999999999999974        6999999999998 77789


Q ss_pred             EEEeCCCcEEEcCEEEEecChhHHhhCCcccCCCCCHHHHHHHhcCCCcce
Q psy13542         85 VVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIELTNLTSI  135 (147)
Q Consensus        85 ~v~~~~g~~~~ad~VI~t~P~~~l~~~~~~f~p~Lp~~~~~ai~~~~~g~~  135 (147)
                      .|++.+| ++.||+||+|+|+..+.++    .|++|+++ +.+..+.+...
T Consensus       237 ~v~~~~g-~~~ad~Vv~a~~~~~~~~~----l~~~~~~~-~~~~~~~~~~~  281 (424)
T 2b9w_A          237 HIHTTDW-DRESDVLVLTVPLEKFLDY----SDADDDER-EYFSKIIHQQY  281 (424)
T ss_dssp             EEEESSC-EEEESEEEECSCHHHHTTS----BCCCHHHH-HHHTTCEEEEE
T ss_pred             EEEECCC-eEEcCEEEECCCHHHHhhc----cCCCHHHH-HHHhcCCccee
Confidence            9999888 5999999999999988643    56666654 35676766443

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.23  E-value=1e-07  Score=76.54  Aligned_cols=102  Identities=10%  Similarity=0.044  Sum_probs=71.4

Q ss_pred             ccccCCCChhccccccccccc---cCC-C--Ccee-eecCCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCC
Q psy13542          9 NTYDGSENWFETSARGLDSFT---DLE-G--CFGV-VWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDP   81 (147)
Q Consensus         9 ~~~~~g~~~~~~S~~~~~~~~---~~~-g--~~~~-~~~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~   81 (147)
                      ....|+.+++++|+..+....   ..+ +  ...+ .+++||+++++++|++.++        .+|++|++|++|.. . 
T Consensus       162 ~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~l~~~~g--------~~I~l~~~V~~I~~-~-  231 (399)
T 1v0j_A          162 TAKQWQTDPKELPAANITRLPVRYTFDNRYFSDTYEGLPTDGYTAWLQNMAADHR--------IEVRLNTDWFDVRG-Q-  231 (399)
T ss_dssp             HHHHHTSCGGGSCGGGCSCCCCCSSSCCCSCCCSEEECBTTHHHHHHHHHTCSTT--------EEEECSCCHHHHHH-H-
T ss_pred             HHhhcCCChhhcChHhhhcceeEeccccchhhhhhcccccccHHHHHHHHHhcCC--------eEEEECCchhhhhh-h-
Confidence            345678899999988763221   111 1  1122 2589999999999998664        48999999999976 2 


Q ss_pred             CcEEEEeCCCcEE-EcCEEEEecChhHHhhCCcccCCCCCHHHHHHHhcCCCcceeEEEEEeCC
Q psy13542         82 KGVVVTCADGTQY-SADRILITVSLGVLKSNLITFVPPLPPKKLTAIELTNLTSIQQDTLFQIP  144 (147)
Q Consensus        82 ~~v~v~~~~g~~~-~ad~VI~t~P~~~l~~~~~~f~p~Lp~~~~~ai~~~~~g~~~Kv~l~~~~  144 (147)
                        |     +  ++ .||+||+|+|+..+.++              .+..++|.++..+.+ .++
T Consensus       232 --v-----~--~~~~aD~VI~t~p~~~l~~~--------------~l~~l~y~s~~~~~~-~~~  271 (399)
T 1v0j_A          232 --L-----R--PGSPAAPVVYTGPLDRYFDY--------------AEGRLGWRTLDFEVE-VLP  271 (399)
T ss_dssp             --H-----T--TTSTTCCEEECSCHHHHTTT--------------TTCCCCEEEEEEEEE-EES
T ss_pred             --h-----h--hcccCCEEEECCcHHHHHhh--------------hhCCCCcceEEEEEE-EEc
Confidence              2     1  34 69999999999998864              234667777666666 544

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.07  E-value=1.6e-06  Score=70.27  Aligned_cols=63  Identities=16%  Similarity=0.132  Sum_probs=51.7

Q ss_pred             ecCCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecChhH
Q psy13542         39 WKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGV  107 (147)
Q Consensus        39 ~~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~~~  107 (147)
                      +++||++.++++|++.+...     |++|+++++|++|.. .++++.....+|+++.||+||+|+|+..
T Consensus       228 ~p~gG~~~l~~~l~~~~~~~-----G~~i~~~~~V~~I~~-~~~~v~~v~~~g~~~~ad~VV~a~~~~~  290 (433)
T 1d5t_A          228 YPLYGLGELPQGFARLSAIY-----GGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYVP  290 (433)
T ss_dssp             EETTCTTHHHHHHHHHHHHH-----TCCCBCSCCCCEEEE-ETTEEEEEEETTEEEECSEEEECGGGCG
T ss_pred             EeCcCHHHHHHHHHHHHHHc-----CCEEECCCEEEEEEE-eCCEEEEEEECCeEEECCEEEECCCCCc
Confidence            37999999999999877533     458999999999998 6667663335788999999999998863

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.04  E-value=6.3e-06  Score=68.02  Aligned_cols=64  Identities=16%  Similarity=0.271  Sum_probs=51.9

Q ss_pred             eeeecCCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCc-EEEEeCCCcEEEcCEEEEecC
Q psy13542         36 GVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKG-VVVTCADGTQYSADRILITVS  104 (147)
Q Consensus        36 ~~~~~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~-v~v~~~~g~~~~ad~VI~t~P  104 (147)
                      .+.|++||++.|+++|++.+...     |++|+++++|++|..+.+++ +.|++.+|+++.||+||++..
T Consensus       247 ~~~yp~gG~~~L~~aL~r~~~~~-----Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~  311 (475)
T 3p1w_A          247 PFIYPLYGLGGIPEGFSRMCAIN-----GGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPS  311 (475)
T ss_dssp             SEEEETTCTTHHHHHHHHHHHHC-------CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGG
T ss_pred             ceEEECCCHHHHHHHHHHHHHHc-----CCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCC
Confidence            44568999999999999988754     67999999999998733344 568889998999999999983

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.96  E-value=3.2e-05  Score=66.02  Aligned_cols=60  Identities=12%  Similarity=0.124  Sum_probs=48.0

Q ss_pred             eecCCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCC-CcE-EEEeCCCcEEEcCEEEEe
Q psy13542         38 VWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDP-KGV-VVTCADGTQYSADRILIT  102 (147)
Q Consensus        38 ~~~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~-~~v-~v~~~~g~~~~ad~VI~t  102 (147)
                      .|+.||++.|+++|++.+...     |+.|+++++|++|..+.+ +++ .|.+.+|+++.||+||++
T Consensus       371 ~yp~GG~g~L~qaL~r~~~~~-----Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~  432 (650)
T 1vg0_A          371 LFPLYGQGELPQCFCRMCAVF-----GGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIE  432 (650)
T ss_dssp             EEETTCTTHHHHHHHHHHHHT-----TCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEE
T ss_pred             EEeCCchhHHHHHHHHHHHHc-----CCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEC
Confidence            347999999999998877654     679999999999987332 554 345678999999999983

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=97.93  E-value=6.3e-06  Score=66.99  Aligned_cols=60  Identities=8%  Similarity=0.061  Sum_probs=50.2

Q ss_pred             cCCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecC--CCcE-EEEeCCCcEEEcCEEEEecChh
Q psy13542         40 KKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWED--PKGV-VVTCADGTQYSADRILITVSLG  106 (147)
Q Consensus        40 ~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~--~~~v-~v~~~~g~~~~ad~VI~t~P~~  106 (147)
                      ++||++.++++|++.+...     |++|+++++|++|.. .  ++++ .|++ +|+++.||+||+|+++.
T Consensus       237 p~gG~~~l~~al~~~~~~~-----G~~i~~~~~V~~i~~-~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~  299 (453)
T 2bcg_G          237 PMYGLGELPQGFARLSAIY-----GGTYMLDTPIDEVLY-KKDTGKFEGVKT-KLGTFKAPLVIADPTYF  299 (453)
T ss_dssp             ETTCTTHHHHHHHHHHHHT-----TCEEECSCCCCEEEE-ETTTTEEEEEEE-TTEEEECSCEEECGGGC
T ss_pred             eCCCHHHHHHHHHHHHHHc-----CCEEECCCEEEEEEE-ECCCCeEEEEEE-CCeEEECCEEEECCCcc
Confidence            7999999999999888543     569999999999998 5  5554 4666 57789999999999875

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=97.90  E-value=6.2e-06  Score=65.83  Aligned_cols=80  Identities=15%  Similarity=0.079  Sum_probs=58.1

Q ss_pred             hccccCCCChhccccccccccc---cCC----CCceeeecCCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceE-EEEec
Q psy13542          8 QNTYDGSENWFETSARGLDSFT---DLE----GCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVT-KINWE   79 (147)
Q Consensus         8 ~~~~~~g~~~~~~S~~~~~~~~---~~~----g~~~~~~~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~-~I~~~   79 (147)
                      .....|+.+++++|+..+....   ...    ...+..+++||+++++++|++..+        .+|++|++|+ +|.. 
T Consensus       155 ~~~~~~~~~~~~ls~~~~~r~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~l~~~~g--------~~I~l~~~V~~~i~~-  225 (384)
T 2bi7_A          155 YTIKQWGMQPSELPASILKRLPVRFNYDDNYFNHKFQGMPKCGYTQMIKSILNHEN--------IKVDLQREFIVEERT-  225 (384)
T ss_dssp             HHHHHHSSCGGGSBGGGCCSCCCCSSSCCCSCCCSEEEEETTHHHHHHHHHHCSTT--------EEEEESCCCCGGGGG-
T ss_pred             HHHHHhCCCHHHhCHHHHhccccccccccccccccccEEECcCHHHHHHHHHhcCC--------CEEEECCeeehhhhc-
Confidence            3455788999999988652111   111    112222489999999999998543        4899999999 8864 


Q ss_pred             CCCcEEEEeCCCcEEEcCEEEEecChhHHhhC
Q psy13542         80 DPKGVVVTCADGTQYSADRILITVSLGVLKSN  111 (147)
Q Consensus        80 ~~~~v~v~~~~g~~~~ad~VI~t~P~~~l~~~  111 (147)
                                     .||+||+|+|+..+.++
T Consensus       226 ---------------~~d~VI~a~p~~~~~~~  242 (384)
T 2bi7_A          226 ---------------HYDHVFYSGPLDAFYGY  242 (384)
T ss_dssp             ---------------GSSEEEECSCHHHHTTT
T ss_pred             ---------------cCCEEEEcCCHHHHHHh
Confidence                           19999999999998764

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=97.84  E-value=4.4e-06  Score=66.29  Aligned_cols=101  Identities=13%  Similarity=0.033  Sum_probs=67.4

Q ss_pred             hhccccCCCChhcccccccccc--cc-CC----CCceeeecCCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEec
Q psy13542          7 NQNTYDGSENWFETSARGLDSF--TD-LE----GCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWE   79 (147)
Q Consensus         7 ~~~~~~~g~~~~~~S~~~~~~~--~~-~~----g~~~~~~~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~   79 (147)
                      -.....||.+++++|+..+...  .. .+    ...+..+++||+++++++|++.   .       +|++|++|++|.. 
T Consensus       150 p~~~~~~~~~~~~lsa~~~~~l~~~~~~~~~~~~~~~~~~p~gG~~~l~~~l~~g---~-------~i~l~~~V~~i~~-  218 (367)
T 1i8t_A          150 GYTEKQWGRSAKELPAFIIKRIPVRFTFDNNYFSDRYQGIPVGGYTKLIEKMLEG---V-------DVKLGIDFLKDKD-  218 (367)
T ss_dssp             HHHHHHHSSCGGGSCTTSSCCCCBCSSSCCCSCCCSEEECBTTCHHHHHHHHHTT---S-------EEECSCCGGGSHH-
T ss_pred             HHHhhhhCCChHHcCHHHHhhceeeeccccccccchhhcccCCCHHHHHHHHhcC---C-------EEEeCCceeeech-
Confidence            3344567899999998766321  11 11    1112225899999999999982   2       8999999999864 


Q ss_pred             CCCcEEEEeCCCcEEEcCEEEEecChhHHhhCCcccCCCCCHHHHHHHhcCCCcceeEEEEEeCC
Q psy13542         80 DPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIELTNLTSIQQDTLFQIP  144 (147)
Q Consensus        80 ~~~~v~v~~~~g~~~~ad~VI~t~P~~~l~~~~~~f~p~Lp~~~~~ai~~~~~g~~~Kv~l~~~~  144 (147)
                         .|        ...||+||+|+|+..+.+.              .+..++|.++.-+.+ .++
T Consensus       219 ---~v--------~~~~D~VV~a~p~~~~~~~--------------~l~~l~y~s~~~v~~-~~d  257 (367)
T 1i8t_A          219 ---SL--------ASKAHRIIYTGPIDQYFDY--------------RFGALEYRSLKFETE-RHE  257 (367)
T ss_dssp             ---HH--------HTTEEEEEECSCHHHHTTT--------------TTCCCCEEEEEEEEE-EES
T ss_pred             ---hh--------hccCCEEEEeccHHHHHHH--------------hhCCCCCceEEEEEE-Eec
Confidence               22        1358999999999987653              133556665555555 444

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=97.54  E-value=6.1e-05  Score=60.75  Aligned_cols=97  Identities=10%  Similarity=0.037  Sum_probs=65.2

Q ss_pred             hccccCCCChhccccccccccccC---CC---Ccee-eecCCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecC
Q psy13542          8 QNTYDGSENWFETSARGLDSFTDL---EG---CFGV-VWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWED   80 (147)
Q Consensus         8 ~~~~~~g~~~~~~S~~~~~~~~~~---~g---~~~~-~~~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~   80 (147)
                      .....||.+++++|+.++......   ..   ...+ .+++||+.+|+++|++..+        .+|++|++|+++    
T Consensus       179 y~~k~~~~~~~~Lsa~~~~Rvp~~~~~d~~yf~~~~qg~P~gGy~~l~e~l~~~~g--------~~V~l~~~v~~~----  246 (397)
T 3hdq_A          179 YTRKQWGLDPSELDASVTARVPTRTNRDNRYFADTYQAMPLHGYTRMFQNMLSSPN--------IKVMLNTDYREI----  246 (397)
T ss_dssp             HHHHHHSSCGGGSBTTTGGGSCCCSSCCCBSCCCSEEEEETTCHHHHHHHHTCSTT--------EEEEESCCGGGT----
T ss_pred             HhCchhCCCHHHHHHHHHHhcCcccccCccchhhhheeccCCCHHHHHHHHHhccC--------CEEEECCeEEec----
Confidence            344578999999998765432211   11   1122 2479999999999977553        589999999743    


Q ss_pred             CCcEEEEeCCCcEEEcCEEEEecChhHHhhCCcccCCCCCHHHHHHHhcCCCcceeEEEE
Q psy13542         81 PKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIELTNLTSIQQDTL  140 (147)
Q Consensus        81 ~~~v~v~~~~g~~~~ad~VI~t~P~~~l~~~~~~f~p~Lp~~~~~ai~~~~~g~~~Kv~l  140 (147)
                                +.++.+|+||+|+|+..+-..              ....+.|.++.-+.+
T Consensus       247 ----------~~~~~~d~vI~T~P~d~~~~~--------------~~g~L~yrsl~~~~~  282 (397)
T 3hdq_A          247 ----------ADFIPFQHMIYTGPVDAFFDF--------------CYGKLPYRSLEFRHE  282 (397)
T ss_dssp             ----------TTTSCEEEEEECSCHHHHTTT--------------TTCCCCEEEEEEEEE
T ss_pred             ----------cccccCCEEEEcCCHHHHHHH--------------hcCCCCCceEEEEEE
Confidence                      234579999999999988542              233555666655555

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=97.44  E-value=0.00013  Score=58.51  Aligned_cols=75  Identities=11%  Similarity=0.046  Sum_probs=46.2

Q ss_pred             ccccccccccc-cCC-CCceeeecCCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEc
Q psy13542         19 ETSARGLDSFT-DLE-GCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSA   96 (147)
Q Consensus        19 ~~S~~~~~~~~-~~~-g~~~~~~~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~a   96 (147)
                      ++|+...+.+. ... +...++ ++||+++|+++|++.++.        +|++|++|++|.. .++++.+.+.+......
T Consensus       293 ~~s~l~~l~~~~~~~~~~~~~~-i~GG~~~l~~~l~~~l~~--------~i~l~~~V~~I~~-~~~gv~v~~~~~~~~~g  362 (376)
T 2e1m_A          293 HLAFFHSFLGRSDIDPRATYWE-IEGGSRMLPETLAKDLRD--------QIVMGQRMVRLEY-YDPGRDGHHGELTGPGG  362 (376)
T ss_dssp             TSBHHHHHHHCSCSCTTCCEEE-ETTCTTHHHHHHHHHGGG--------TEECSEEEEEEEE-CCCC-------------
T ss_pred             hhhHHHHHHHhhhhccCCceEE-ECCcHHHHHHHHHHhcCC--------cEEecCeEEEEEE-CCCceEEEeCCCcCCCC
Confidence            66666655433 122 334444 799999999999999974        7999999999999 77777776654444566


Q ss_pred             CEEEEec
Q psy13542         97 DRILITV  103 (147)
Q Consensus        97 d~VI~t~  103 (147)
                      .+|.+.+
T Consensus       363 ~~~~~~~  369 (376)
T 2e1m_A          363 PAVAIQT  369 (376)
T ss_dssp             CCEEEEE
T ss_pred             CeeEEEe
Confidence            7777665

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=96.98  E-value=0.00099  Score=53.15  Aligned_cols=58  Identities=16%  Similarity=0.251  Sum_probs=47.8

Q ss_pred             HHHHHHHHHhhCCCCCCCCCcceEEcCC---ceEEEEecCCCcEE-EEeCCCcEEEcCEEEEecChhH
Q psy13542         44 YGNVFKLLMKQMPGQTPIDLSKKLLLKK---EVTKINWEDPKGVV-VTCADGTQYSADRILITVSLGV  107 (147)
Q Consensus        44 ~~~l~~~l~~~l~~~~~~~~g~~i~l~~---~V~~I~~~~~~~v~-v~~~~g~~~~ad~VI~t~P~~~  107 (147)
                      ...+.++|.+.+...     |.+|++++   +|++|.. .++++. |++.+|+++.||+||+|+-...
T Consensus       160 ~~~~~~~L~~~a~~~-----Gv~i~~~t~~~~V~~i~~-~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s  221 (438)
T 3dje_A          160 ARNALVAAAREAQRM-----GVKFVTGTPQGRVVTLIF-ENNDVKGAVTADGKIWRAERTFLCAGASA  221 (438)
T ss_dssp             HHHHHHHHHHHHHHT-----TCEEEESTTTTCEEEEEE-ETTEEEEEEETTTEEEECSEEEECCGGGG
T ss_pred             HHHHHHHHHHHHHhc-----CCEEEeCCcCceEEEEEe-cCCeEEEEEECCCCEEECCEEEECCCCCh
Confidence            467777887777543     56999999   9999998 677887 9999998899999999997664

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=96.90  E-value=0.00077  Score=52.30  Aligned_cols=55  Identities=15%  Similarity=0.212  Sum_probs=45.6

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecChh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLG  106 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~~  106 (147)
                      ..+.++|.+.+...     |.+|+++++|++|.. +++++.|++.+| ++.||+||+|+-..
T Consensus       154 ~~~~~~l~~~a~~~-----Gv~i~~~~~V~~i~~-~~~~~~V~t~~g-~i~a~~VV~A~G~~  208 (381)
T 3nyc_A          154 DALHQGYLRGIRRN-----QGQVLCNHEALEIRR-VDGAWEVRCDAG-SYRAAVLVNAAGAW  208 (381)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEESSCCCCEEEE-ETTEEEEECSSE-EEEESEEEECCGGG
T ss_pred             HHHHHHHHHHHHHC-----CCEEEcCCEEEEEEE-eCCeEEEEeCCC-EEEcCEEEECCChh
Confidence            67777777776543     469999999999998 667799999888 89999999998764

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=96.80  E-value=0.002  Score=49.57  Aligned_cols=58  Identities=9%  Similarity=0.121  Sum_probs=46.1

Q ss_pred             HHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCc-EEEEeCCC--cEEEcCEEEEecChhH
Q psy13542         44 YGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKG-VVVTCADG--TQYSADRILITVSLGV  107 (147)
Q Consensus        44 ~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~-v~v~~~~g--~~~~ad~VI~t~P~~~  107 (147)
                      ...+.+.|.+.+...     |.+|+++++|++|.. ++++ +.|.+.+|  .++.||+||+|+-...
T Consensus       149 ~~~~~~~l~~~~~~~-----Gv~i~~~~~v~~i~~-~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~s  209 (369)
T 3dme_A          149 SHALMLAYQGDAESD-----GAQLVFHTPLIAGRV-RPEGGFELDFGGAEPMTLSCRVLINAAGLHA  209 (369)
T ss_dssp             HHHHHHHHHHHHHHT-----TCEEECSCCEEEEEE-CTTSSEEEEECTTSCEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHC-----CCEEECCCEEEEEEE-cCCceEEEEECCCceeEEEeCEEEECCCcch
Confidence            456777777776543     569999999999998 5554 88988888  4899999999997653

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=96.75  E-value=0.0018  Score=54.99  Aligned_cols=57  Identities=5%  Similarity=0.121  Sum_probs=47.3

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecChhH
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGV  107 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~~~  107 (147)
                      ..+.++|.+.+...     |.+|+++++|++|.. ++++|.|++.+|.++.||.||+|+-...
T Consensus       417 ~~l~~aL~~~a~~~-----Gv~i~~~t~V~~l~~-~~~~v~V~t~~G~~i~Ad~VVlAtG~~s  473 (676)
T 3ps9_A          417 AELTRNVLELAQQQ-----GLQIYYQYQLQNFSR-KDDCWLLNFAGDQQATHSVVVLANGHQI  473 (676)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEEESCCEEEEEE-ETTEEEEEETTSCEEEESEEEECCGGGG
T ss_pred             HHHHHHHHHHHHhC-----CCEEEeCCeeeEEEE-eCCeEEEEECCCCEEECCEEEECCCcch
Confidence            67777777766543     469999999999998 7778999998888999999999997663

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=96.66  E-value=0.0023  Score=54.50  Aligned_cols=56  Identities=7%  Similarity=0.076  Sum_probs=46.3

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCc-EEEcCEEEEecChh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGT-QYSADRILITVSLG  106 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~-~~~ad~VI~t~P~~  106 (147)
                      ..+.++|.+.+...     |.+|+++++|++|.. +++++.|.+.+|+ ++.||+||+|+...
T Consensus       412 ~~l~~aL~~~a~~~-----Gv~i~~~t~V~~l~~-~~~~v~V~t~~G~~~i~Ad~VVlAtG~~  468 (689)
T 3pvc_A          412 SDLTHALMMLAQQN-----GMTCHYQHELQRLKR-IDSQWQLTFGQSQAAKHHATVILATGHR  468 (689)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEEESCCEEEEEE-CSSSEEEEEC-CCCCEEESEEEECCGGG
T ss_pred             HHHHHHHHHHHHhC-----CCEEEeCCeEeEEEE-eCCeEEEEeCCCcEEEECCEEEECCCcc
Confidence            67778887766543     469999999999999 7778999998887 89999999999776

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=96.52  E-value=0.0043  Score=48.04  Aligned_cols=56  Identities=25%  Similarity=0.334  Sum_probs=44.7

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecChhH
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGV  107 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~~~  107 (147)
                      ..+.+.|.+.+...     |.+++.+++|++|.. +++++.|++.+| +++||+||+|+....
T Consensus       149 ~~l~~~l~~~~~~~-----G~~i~~~~~V~~i~~-~~~~~~v~~~~g-~~~a~~vV~a~G~~s  204 (372)
T 2uzz_A          149 ELAIKTWIQLAKEA-----GCAQLFNCPVTAIRH-DDDGVTIETADG-EYQAKKAIVCAGTWV  204 (372)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEECSCCEEEEEE-CSSSEEEEESSC-EEEEEEEEECCGGGG
T ss_pred             HHHHHHHHHHHHHC-----CCEEEcCCEEEEEEE-cCCEEEEEECCC-eEEcCEEEEcCCccH
Confidence            36667776666433     458999999999998 667798988888 599999999998754

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=96.43  E-value=0.005  Score=47.93  Aligned_cols=55  Identities=13%  Similarity=0.036  Sum_probs=44.1

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEE-EEeCCCcEEEcCEEEEecChh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVV-VTCADGTQYSADRILITVSLG  106 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~-v~~~~g~~~~ad~VI~t~P~~  106 (147)
                      ..+.+.|.+.+...     |.+++.+++|++|.. +++++. |++.+| +++||+||+|+-..
T Consensus       149 ~~l~~~l~~~~~~~-----Gv~i~~~~~v~~i~~-~~~~v~gv~~~~g-~i~a~~VV~A~G~~  204 (382)
T 1y56_B          149 FEATTAFAVKAKEY-----GAKLLEYTEVKGFLI-ENNEIKGVKTNKG-IIKTGIVVNATNAW  204 (382)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEECSCCEEEEEE-SSSBEEEEEETTE-EEECSEEEECCGGG
T ss_pred             HHHHHHHHHHHHHC-----CCEEECCceEEEEEE-ECCEEEEEEECCc-EEECCEEEECcchh
Confidence            56667776666433     459999999999998 677887 888888 89999999999764

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=96.38  E-value=0.011  Score=46.02  Aligned_cols=53  Identities=15%  Similarity=0.229  Sum_probs=43.5

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecCh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      ..|-+.|.+.++.        .|+++++|+++...++++++|++.||++++||.||-|=-.
T Consensus       112 ~~L~~~L~~~~~~--------~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~adlvVgADG~  164 (412)
T 4hb9_A          112 TELKEILNKGLAN--------TIQWNKTFVRYEHIENGGIKIFFADGSHENVDVLVGADGS  164 (412)
T ss_dssp             HHHHHHHHTTCTT--------TEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECCCT
T ss_pred             HHHHHHHHhhccc--------eEEEEEEEEeeeEcCCCeEEEEECCCCEEEeeEEEECCCC
Confidence            4566777777764        7999999999987455679999999999999999988544

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=96.37  E-value=0.0098  Score=46.87  Aligned_cols=55  Identities=9%  Similarity=0.173  Sum_probs=46.4

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecChhH
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGV  107 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~~~  107 (147)
                      ..|.+.|.+.+..       ..|+++++|++|.. ++++++|++.+|++++||.||.|.-...
T Consensus       128 ~~l~~~L~~~~~~-------~~i~~~~~v~~i~~-~~~~v~v~~~~g~~~~ad~vV~AdG~~S  182 (398)
T 2xdo_A          128 NDLRAILLNSLEN-------DTVIWDRKLVMLEP-GKKKWTLTFENKPSETADLVILANGGMS  182 (398)
T ss_dssp             HHHHHHHHHTSCT-------TSEEESCCEEEEEE-CSSSEEEEETTSCCEEESEEEECSCTTC
T ss_pred             HHHHHHHHhhcCC-------CEEEECCEEEEEEE-CCCEEEEEECCCcEEecCEEEECCCcch
Confidence            5677788888764       27999999999998 7778999999998999999999987643

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=96.36  E-value=0.0043  Score=49.99  Aligned_cols=59  Identities=17%  Similarity=0.311  Sum_probs=48.4

Q ss_pred             CCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecChh
Q psy13542         41 KGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLG  106 (147)
Q Consensus        41 ~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~~  106 (147)
                      ......+.+.|.+.+...     |.+|+++++|++|.. +++++.|++.+| +++||+||+|+-..
T Consensus       128 ~~~~~~l~~~L~~~l~~~-----Gv~i~~~~~V~~i~~-~~~~~~V~~~~g-~i~ad~VIlAtG~~  186 (417)
T 3v76_A          128 DHSAKDIIRMLMAEMKEA-----GVQLRLETSIGEVER-TASGFRVTTSAG-TVDAASLVVASGGK  186 (417)
T ss_dssp             SSCHHHHHHHHHHHHHHH-----TCEEECSCCEEEEEE-ETTEEEEEETTE-EEEESEEEECCCCS
T ss_pred             CCCHHHHHHHHHHHHHHC-----CCEEEECCEEEEEEE-eCCEEEEEECCc-EEEeeEEEECCCCc
Confidence            445678888888777543     459999999999998 677899999888 89999999998654

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=96.33  E-value=0.0035  Score=48.75  Aligned_cols=55  Identities=13%  Similarity=0.175  Sum_probs=44.7

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecChh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLG  106 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~~  106 (147)
                      ..+.+.|.+.+...     |.+++++++|++|.. +++++.|++.+| ++.||.||+|+...
T Consensus       164 ~~~~~~l~~~~~~~-----g~~i~~~~~v~~i~~-~~~~~~v~~~~g-~~~a~~vV~A~G~~  218 (382)
T 1ryi_A          164 YFVCKAYVKAAKML-----GAEIFEHTPVLHVER-DGEALFIKTPSG-DVWANHVVVASGVW  218 (382)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEETTCCCCEEEC-SSSSEEEEETTE-EEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHC-----CCEEEcCCcEEEEEE-ECCEEEEEcCCc-eEEcCEEEECCChh
Confidence            56777777766543     458999999999998 777888888888 89999999999763

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=96.31  E-value=0.011  Score=46.60  Aligned_cols=56  Identities=16%  Similarity=0.223  Sum_probs=47.2

Q ss_pred             cHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecChh
Q psy13542         43 GYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLG  106 (147)
Q Consensus        43 G~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~~  106 (147)
                      +...+.+.|.+.+..       .+|+++++|++|.. ++++++|++.+|++++||.||.|.-..
T Consensus        97 ~~~~l~~~L~~~~~~-------~~i~~~~~v~~i~~-~~~~v~v~~~~g~~~~ad~vV~AdG~~  152 (397)
T 2vou_A           97 SYDSIYGGLYELFGP-------ERYHTSKCLVGLSQ-DSETVQMRFSDGTKAEANWVIGADGGA  152 (397)
T ss_dssp             EHHHHHHHHHHHHCS-------TTEETTCCEEEEEE-CSSCEEEEETTSCEEEESEEEECCCTT
T ss_pred             CHHHHHHHHHHhCCC-------cEEEcCCEEEEEEe-cCCEEEEEECCCCEEECCEEEECCCcc
Confidence            346788888887753       48999999999998 778899999999999999999997554

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=96.31  E-value=0.0048  Score=48.41  Aligned_cols=55  Identities=22%  Similarity=0.291  Sum_probs=42.6

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecChh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLG  106 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~~  106 (147)
                      ..+.+.|.+.+...     |.+|+++++|++|.. +++++.|++.+| +++||.||+|+-..
T Consensus       153 ~~~~~~l~~~a~~~-----Gv~i~~~~~V~~i~~-~~~~v~v~t~~g-~i~a~~VV~A~G~~  207 (397)
T 2oln_A          153 RGTLAALFTLAQAA-----GATLRAGETVTELVP-DADGVSVTTDRG-TYRAGKVVLACGPY  207 (397)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEEESCCEEEEEE-ETTEEEEEESSC-EEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHc-----CCEEECCCEEEEEEE-cCCeEEEEECCC-EEEcCEEEEcCCcC
Confidence            45666666655432     458999999999998 667888888777 89999999999543

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=96.28  E-value=0.0056  Score=49.37  Aligned_cols=57  Identities=16%  Similarity=0.231  Sum_probs=45.7

Q ss_pred             cHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCc-EEEEeCCCcEEEcCEEEEecCh
Q psy13542         43 GYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKG-VVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        43 G~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~-v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      ....+.+.|.+.+...     |.+|+++++|++|.. ++++ +.|++.+|++++||.||+|+-.
T Consensus       132 ~~~~l~~~L~~~~~~~-----GV~i~~~~~V~~i~~-~~~~v~~V~~~~G~~i~Ad~VVlAtGg  189 (447)
T 2i0z_A          132 KAQSVVDALLTRLKDL-----GVKIRTNTPVETIEY-ENGQTKAVILQTGEVLETNHVVIAVGG  189 (447)
T ss_dssp             CHHHHHHHHHHHHHHT-----TCEEECSCCEEEEEE-ETTEEEEEEETTCCEEECSCEEECCCC
T ss_pred             CHHHHHHHHHHHHHHC-----CCEEEeCcEEEEEEe-cCCcEEEEEECCCCEEECCEEEECCCC
Confidence            3577888887777543     469999999999997 5566 7888888977999999999853

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=96.27  E-value=0.0056  Score=47.62  Aligned_cols=55  Identities=20%  Similarity=0.419  Sum_probs=45.0

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecChh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLG  106 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~~  106 (147)
                      ..+.+.|.+.+...     |.+++.+++|++|.. +++++.|++.+| +++||.||+|+-..
T Consensus       150 ~~~~~~l~~~~~~~-----Gv~i~~~~~v~~i~~-~~~~~~v~~~~g-~~~a~~vV~A~G~~  204 (389)
T 2gf3_A          150 ENCIRAYRELAEAR-----GAKVLTHTRVEDFDI-SPDSVKIETANG-SYTADKLIVSMGAW  204 (389)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEECSCCEEEEEE-CSSCEEEEETTE-EEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHC-----CCEEEcCcEEEEEEe-cCCeEEEEeCCC-EEEeCEEEEecCcc
Confidence            57777777776543     469999999999998 677788888777 79999999999765

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=96.13  E-value=0.011  Score=46.37  Aligned_cols=54  Identities=15%  Similarity=0.213  Sum_probs=42.7

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecC
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVS  104 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P  104 (147)
                      ..+.+.+.+.+...     |.+++++++|++|.. +++++.|++.+|+++.||.||+|+.
T Consensus       187 ~~~~~~l~~~l~~~-----gv~i~~~~~v~~i~~-~~~~~~v~~~~g~~i~~d~vv~a~G  240 (384)
T 2v3a_A          187 PAAAKAVQAGLEGL-----GVRFHLGPVLASLKK-AGEGLEAHLSDGEVIPCDLVVSAVG  240 (384)
T ss_dssp             HHHHHHHHHHHHTT-----TCEEEESCCEEEEEE-ETTEEEEEETTSCEEEESEEEECSC
T ss_pred             HHHHHHHHHHHHHc-----CCEEEeCCEEEEEEe-cCCEEEEEECCCCEEECCEEEECcC
Confidence            34555566655433     469999999999998 6667888888998999999999985

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=96.03  E-value=0.011  Score=46.60  Aligned_cols=54  Identities=20%  Similarity=0.257  Sum_probs=45.2

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecChh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLG  106 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~~  106 (147)
                      ..+.+.|.+.+..       .+|+++++|++|.. ++++++|++.+|++++||.||.|.-..
T Consensus       127 ~~l~~~L~~~~~~-------~~i~~~~~v~~i~~-~~~~v~v~~~~g~~~~a~~vV~AdG~~  180 (407)
T 3rp8_A          127 AELQREMLDYWGR-------DSVQFGKRVTRCEE-DADGVTVWFTDGSSASGDLLIAADGSH  180 (407)
T ss_dssp             HHHHHHHHHHHCG-------GGEEESCCEEEEEE-ETTEEEEEETTSCEEEESEEEECCCTT
T ss_pred             HHHHHHHHHhCCc-------CEEEECCEEEEEEe-cCCcEEEEEcCCCEEeeCEEEECCCcC
Confidence            5667777777753       28999999999998 778899999999999999999997553

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=96.00  E-value=0.0081  Score=41.93  Aligned_cols=53  Identities=13%  Similarity=0.083  Sum_probs=41.6

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecCh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      ..+.+.+.+.+...     |.+++++ +|++|.. +++++.|++.+| ++.||.||+|+-.
T Consensus        56 ~~~~~~l~~~~~~~-----gv~v~~~-~v~~i~~-~~~~~~v~~~~g-~i~ad~vI~A~G~  108 (180)
T 2ywl_A           56 EELLRRLEAHARRY-----GAEVRPG-VVKGVRD-MGGVFEVETEEG-VEKAERLLLCTHK  108 (180)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEEEC-CCCEEEE-CSSSEEEECSSC-EEEEEEEEECCTT
T ss_pred             HHHHHHHHHHHHHc-----CCEEEeC-EEEEEEE-cCCEEEEEECCC-EEEECEEEECCCC
Confidence            45666666655433     3589999 9999998 667788998888 8999999999854

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=95.99  E-value=0.011  Score=49.37  Aligned_cols=57  Identities=9%  Similarity=0.205  Sum_probs=45.3

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcE-EEEeCCCcEEEcCEEEEecChhH
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGV-VVTCADGTQYSADRILITVSLGV  107 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v-~v~~~~g~~~~ad~VI~t~P~~~  107 (147)
                      ..+.+.|.+.+...     |.+|+++++|++|.. .++++ .|++.+|+++.||.||+|+-...
T Consensus       220 ~~l~~~L~~~l~~~-----Gv~I~~~t~V~~I~~-~~~~v~gV~l~~G~~i~Ad~VVlA~G~~s  277 (549)
T 3nlc_A          220 VTMIEKMRATIIEL-----GGEIRFSTRVDDLHM-EDGQITGVTLSNGEEIKSRHVVLAVGHSA  277 (549)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEESSCCEEEEEE-SSSBEEEEEETTSCEEECSCEEECCCTTC
T ss_pred             HHHHHHHHHHHHhc-----CCEEEeCCEEEEEEE-eCCEEEEEEECCCCEEECCEEEECCCCCh
Confidence            56777777766543     469999999999998 66655 48889998999999999986543

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=95.98  E-value=0.014  Score=47.68  Aligned_cols=41  Identities=22%  Similarity=0.373  Sum_probs=35.7

Q ss_pred             cceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecCh
Q psy13542         64 SKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        64 g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      |.+++++++|++|.. +++++.|++.+|+++.||.||+|+..
T Consensus       237 GV~i~~~~~V~~i~~-~~~~v~v~~~~g~~i~aD~Vv~a~G~  277 (499)
T 1xdi_A          237 GVRLFKNARAASVTR-TGAGVLVTMTDGRTVEGSHALMTIGS  277 (499)
T ss_dssp             TCEEETTCCEEEEEE-CSSSEEEEETTSCEEEESEEEECCCE
T ss_pred             CCEEEeCCEEEEEEE-eCCEEEEEECCCcEEEcCEEEECCCC
Confidence            459999999999998 66678888888989999999999853

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=95.97  E-value=0.013  Score=47.40  Aligned_cols=55  Identities=11%  Similarity=0.199  Sum_probs=42.0

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecCh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      ..+.+.+.+.+...     |.+++++++|++|.. .++++.|.+.+|+++.||.||+|+..
T Consensus       202 ~~~~~~l~~~l~~~-----GV~i~~~~~v~~i~~-~~~~v~v~~~~g~~i~aD~Vv~a~G~  256 (472)
T 3iwa_A          202 KSLSQMLRHDLEKN-----DVVVHTGEKVVRLEG-ENGKVARVITDKRTLDADLVILAAGV  256 (472)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEECSCCEEEEEE-SSSBEEEEEESSCEEECSEEEECSCE
T ss_pred             HHHHHHHHHHHHhc-----CCEEEeCCEEEEEEc-cCCeEEEEEeCCCEEEcCEEEECCCC
Confidence            33444444444332     469999999999998 77788888889989999999999854

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=95.95  E-value=0.011  Score=48.05  Aligned_cols=41  Identities=15%  Similarity=0.299  Sum_probs=36.5

Q ss_pred             cceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecCh
Q psy13542         64 SKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        64 g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      |.+++++++|++|.. .++++.|++.+|+++.||.||+|+..
T Consensus       246 Gv~i~~~~~V~~i~~-~~~~v~v~~~~g~~i~aD~Vi~A~G~  286 (484)
T 3o0h_A          246 GISIIYEATVSQVQS-TENCYNVVLTNGQTICADRVMLATGR  286 (484)
T ss_dssp             TCEEESSCCEEEEEE-CSSSEEEEETTSCEEEESEEEECCCE
T ss_pred             CCEEEeCCEEEEEEe-eCCEEEEEECCCcEEEcCEEEEeeCC
Confidence            458999999999998 77788999999989999999999864

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=95.84  E-value=0.018  Score=45.73  Aligned_cols=54  Identities=17%  Similarity=0.210  Sum_probs=40.6

Q ss_pred             HHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcE-EEEeCCCcEEEcCEEEEecCh
Q psy13542         46 NVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGV-VVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        46 ~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v-~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      .+.+.+.+.+...     |.+++++++|++|.. +++++ .|.+.+|+++.||.||+++..
T Consensus       195 ~~~~~l~~~l~~~-----GV~i~~~~~v~~i~~-~~~~v~~v~l~dG~~i~aD~Vv~a~G~  249 (415)
T 3lxd_A          195 ALSEFYQAEHRAH-----GVDLRTGAAMDCIEG-DGTKVTGVRMQDGSVIPADIVIVGIGI  249 (415)
T ss_dssp             HHHHHHHHHHHHT-----TCEEEETCCEEEEEE-SSSBEEEEEESSSCEEECSEEEECSCC
T ss_pred             HHHHHHHHHHHhC-----CCEEEECCEEEEEEe-cCCcEEEEEeCCCCEEEcCEEEECCCC
Confidence            3444444444332     469999999999998 66665 688899999999999999853

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=95.81  E-value=0.011  Score=47.21  Aligned_cols=56  Identities=16%  Similarity=0.309  Sum_probs=43.9

Q ss_pred             cHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecC----CCcEEEEeCCCcEEEcCEEEEecCh
Q psy13542         43 GYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWED----PKGVVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        43 G~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~----~~~v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      .-..+.+.|.+.+...     |.+|+++++|++|.. +    ++++.|++.+| +++||+||+|+-.
T Consensus       107 ~~~~l~~~L~~~~~~~-----Gv~i~~~~~v~~i~~-~~~g~~~~~~v~~~~g-~i~ad~VVlAtG~  166 (401)
T 2gqf_A          107 GAEQIVEMLKSECDKY-----GAKILLRSEVSQVER-IQNDEKVRFVLQVNST-QWQCKNLIVATGG  166 (401)
T ss_dssp             CTHHHHHHHHHHHHHH-----TCEEECSCCEEEEEE-CCSCSSCCEEEEETTE-EEEESEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHC-----CCEEEeCCEEEEEEc-ccCcCCCeEEEEECCC-EEECCEEEECCCC
Confidence            3466777777766533     458999999999997 5    56788988877 8999999999843

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=95.62  E-value=0.03  Score=45.05  Aligned_cols=54  Identities=17%  Similarity=0.265  Sum_probs=42.2

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecCh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      ..+.+.+.+.+...     |.+++++++|++|.. .++++.|++.+| ++.||.||+|+..
T Consensus       189 ~~~~~~l~~~l~~~-----GV~i~~~~~v~~i~~-~~~~v~v~~~~g-~i~aD~Vv~A~G~  242 (452)
T 3oc4_A          189 KEMVAEVQKSLEKQ-----AVIFHFEETVLGIEE-TANGIVLETSEQ-EISCDSGIFALNL  242 (452)
T ss_dssp             HHHHHHHHHHHHTT-----TEEEEETCCEEEEEE-CSSCEEEEESSC-EEEESEEEECSCC
T ss_pred             HHHHHHHHHHHHHc-----CCEEEeCCEEEEEEc-cCCeEEEEECCC-EEEeCEEEECcCC
Confidence            44555555555543     569999999999997 667788888777 8999999999854

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=95.60  E-value=0.021  Score=45.18  Aligned_cols=55  Identities=16%  Similarity=0.260  Sum_probs=40.6

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcE-EEEeCCCcEEEcCEEEEecCh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGV-VVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v-~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      ..+.+.+.+.+...     |.+++++++|++|.. +++++ .|.+.+|+++.||.||+++..
T Consensus       184 ~~~~~~l~~~l~~~-----GV~i~~~~~v~~i~~-~~~~v~~V~~~dG~~i~aD~Vv~a~G~  239 (404)
T 3fg2_P          184 PEISSYFHDRHSGA-----GIRMHYGVRATEIAA-EGDRVTGVVLSDGNTLPCDLVVVGVGV  239 (404)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEECSCCEEEEEE-ETTEEEEEEETTSCEEECSEEEECCCE
T ss_pred             HHHHHHHHHHHHhC-----CcEEEECCEEEEEEe-cCCcEEEEEeCCCCEEEcCEEEECcCC
Confidence            34444444444332     469999999999987 55555 588899999999999999854

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=95.53  E-value=0.028  Score=45.94  Aligned_cols=53  Identities=17%  Similarity=0.298  Sum_probs=40.7

Q ss_pred             HHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecCh
Q psy13542         47 VFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        47 l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      +.+.+.+.+...     |.++++++.|++|.. .++.+.|++.+|+++.||.||+++..
T Consensus       228 ~~~~~~~~l~~~-----GV~v~~~~~V~~i~~-~~~~~~v~l~dG~~i~aD~Vv~a~G~  280 (493)
T 1m6i_A          228 LSNWTMEKVRRE-----GVKVMPNAIVQSVGV-SSGKLLIKLKDGRKVETDHIVAAVGL  280 (493)
T ss_dssp             HHHHHHHHHHTT-----TCEEECSCCEEEEEE-ETTEEEEEETTSCEEEESEEEECCCE
T ss_pred             HHHHHHHHHHhc-----CCEEEeCCEEEEEEe-cCCeEEEEECCCCEEECCEEEECCCC
Confidence            444444444433     569999999999987 55677888899999999999999853

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=95.51  E-value=0.031  Score=43.80  Aligned_cols=57  Identities=12%  Similarity=0.314  Sum_probs=46.2

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcE--EEEeCCCcEEEcCEEEEecChh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGV--VVTCADGTQYSADRILITVSLG  106 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v--~v~~~~g~~~~ad~VI~t~P~~  106 (147)
                      ..+.+.|.+.+...   + |.+|+++++|++|.. +++++  .|++.+|++++||.||.|.-..
T Consensus       107 ~~l~~~L~~~~~~~---~-gv~i~~~~~v~~i~~-~~~~v~g~v~~~~g~~~~ad~vV~AdG~~  165 (399)
T 2x3n_A          107 ESLRRLVLEKIDGE---A-TVEMLFETRIEAVQR-DERHAIDQVRLNDGRVLRPRVVVGADGIA  165 (399)
T ss_dssp             HHHHHHHHHHHTTC---T-TEEEECSCCEEEEEE-CTTSCEEEEEETTSCEEEEEEEEECCCTT
T ss_pred             HHHHHHHHHHhhhc---C-CcEEEcCCEEEEEEE-cCCceEEEEEECCCCEEECCEEEECCCCC
Confidence            56777777777541   0 358999999999998 77788  8999999899999999998654

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=95.41  E-value=0.019  Score=46.14  Aligned_cols=55  Identities=24%  Similarity=0.233  Sum_probs=41.6

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecCh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      ..+.+.+.+.+...     |.+++++++|++|.. +++++.+++.+|+++.+|.||+|+..
T Consensus       208 ~~~~~~l~~~l~~~-----Gv~i~~~~~V~~i~~-~~~~v~v~~~~g~~i~~D~vv~A~G~  262 (455)
T 2yqu_A          208 LEVSRAAERVFKKQ-----GLTIRTGVRVTAVVP-EAKGARVELEGGEVLEADRVLVAVGR  262 (455)
T ss_dssp             HHHHHHHHHHHHHH-----TCEEECSCCEEEEEE-ETTEEEEEETTSCEEEESEEEECSCE
T ss_pred             HHHHHHHHHHHHHC-----CCEEEECCEEEEEEE-eCCEEEEEECCCeEEEcCEEEECcCC
Confidence            34445555544332     458999999999998 66678888888889999999999843

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=95.33  E-value=0.021  Score=44.53  Aligned_cols=54  Identities=15%  Similarity=0.097  Sum_probs=42.2

Q ss_pred             HHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCc-EEEEeCCCcEEEcCEEEEecChh
Q psy13542         46 NVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKG-VVVTCADGTQYSADRILITVSLG  106 (147)
Q Consensus        46 ~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~-v~v~~~~g~~~~ad~VI~t~P~~  106 (147)
                      .+.+.|.+.+...     |.+++++++|++|.. ++++ +.|++.+| ++.||.||+|+-..
T Consensus       175 ~~~~~l~~~~~~~-----g~~i~~~~~v~~i~~-~~~~~~~v~~~~g-~~~a~~vV~a~G~~  229 (405)
T 2gag_B          175 HVAWAFARKANEM-----GVDIIQNCEVTGFIK-DGEKVTGVKTTRG-TIHAGKVALAGAGH  229 (405)
T ss_dssp             HHHHHHHHHHHHT-----TCEEECSCCEEEEEE-SSSBEEEEEETTC-CEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHC-----CCEEEcCCeEEEEEE-eCCEEEEEEeCCc-eEECCEEEECCchh
Confidence            6667776666433     459999999999998 5555 56888888 79999999999754

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=95.29  E-value=0.035  Score=45.30  Aligned_cols=52  Identities=13%  Similarity=0.222  Sum_probs=39.7

Q ss_pred             HHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCC-cEEEEeCCCcEEEcCEEEEecC
Q psy13542         47 VFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPK-GVVVTCADGTQYSADRILITVS  104 (147)
Q Consensus        47 l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~-~v~v~~~~g~~~~ad~VI~t~P  104 (147)
                      +.+.+.+.+...     |.+++++++|++|.. +++ .+.|++.+|+++.+|.||+|+.
T Consensus       233 ~~~~l~~~l~~~-----GV~i~~~~~v~~i~~-~~~~~~~v~~~~G~~i~~D~vv~a~G  285 (490)
T 1fec_A          233 LRKQLTEQLRAN-----GINVRTHENPAKVTK-NADGTRHVVFESGAEADYDVVMLAIG  285 (490)
T ss_dssp             HHHHHHHHHHHT-----TEEEEETCCEEEEEE-CTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             HHHHHHHHHHhC-----CCEEEeCCEEEEEEE-cCCCEEEEEECCCcEEEcCEEEEccC
Confidence            444444444433     469999999999998 543 4788888998999999999985

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=95.26  E-value=0.024  Score=46.68  Aligned_cols=53  Identities=21%  Similarity=0.389  Sum_probs=39.9

Q ss_pred             HHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCc----EEEEeCCCc-EEEcCEEEEecC
Q psy13542         46 NVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKG----VVVTCADGT-QYSADRILITVS  104 (147)
Q Consensus        46 ~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~----v~v~~~~g~-~~~ad~VI~t~P  104 (147)
                      .+.+.+.+.+...     |.+++++++|++|.. .+++    +.|++.+|+ ++.||.||+|+.
T Consensus       256 ~~~~~l~~~l~~~-----GV~i~~~~~V~~i~~-~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G  313 (523)
T 1mo9_A          256 ETRAYVLDRMKEQ-----GMEIISGSNVTRIEE-DANGRVQAVVAMTPNGEMRIETDFVFLGLG  313 (523)
T ss_dssp             HHHHHHHHHHHHT-----TCEEESSCEEEEEEE-CTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             HHHHHHHHHHHhC-----CcEEEECCEEEEEEE-cCCCceEEEEEEECCCcEEEEcCEEEECcC
Confidence            3444555555433     469999999999987 5455    778888887 899999999984

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=95.23  E-value=0.031  Score=42.46  Aligned_cols=55  Identities=18%  Similarity=0.283  Sum_probs=42.5

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecCh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      ..+.+.+.+.+...     +.++++++.|++|.. .++.+.|++.+|+++.+|+||+|+-.
T Consensus        65 ~~~~~~l~~~~~~~-----~~~~~~~~~v~~i~~-~~~~~~v~~~~g~~~~~~~lv~AtG~  119 (335)
T 2zbw_A           65 KDLVKGLVEQVAPF-----NPVYSLGERAETLER-EGDLFKVTTSQGNAYTAKAVIIAAGV  119 (335)
T ss_dssp             HHHHHHHHHHHGGG-----CCEEEESCCEEEEEE-ETTEEEEEETTSCEEEEEEEEECCTT
T ss_pred             HHHHHHHHHHHHHc-----CCEEEeCCEEEEEEE-CCCEEEEEECCCCEEEeCEEEECCCC
Confidence            45666665555422     237899999999998 55678899888888999999999865

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=95.21  E-value=0.047  Score=42.11  Aligned_cols=55  Identities=20%  Similarity=0.228  Sum_probs=42.8

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCC-cEEEEeCCCcEEEcCEEEEecCh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPK-GVVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~-~v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      ..+.+.+.+.+...     +.++++++.|++|.. .++ .+.|++.+|+++.+|+||+|+-.
T Consensus        74 ~~~~~~l~~~~~~~-----~~~~~~~~~v~~i~~-~~~~~~~v~~~~g~~~~~~~li~AtG~  129 (360)
T 3ab1_A           74 IDLVESLWAQAERY-----NPDVVLNETVTKYTK-LDDGTFETRTNTGNVYRSRAVLIAAGL  129 (360)
T ss_dssp             HHHHHHHHHHHHTT-----CCEEECSCCEEEEEE-CTTSCEEEEETTSCEEEEEEEEECCTT
T ss_pred             HHHHHHHHHHHHHh-----CCEEEcCCEEEEEEE-CCCceEEEEECCCcEEEeeEEEEccCC
Confidence            55666666655432     348999999999998 544 78899999989999999999865

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=95.19  E-value=0.024  Score=45.04  Aligned_cols=41  Identities=24%  Similarity=0.265  Sum_probs=34.6

Q ss_pred             cceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecCh
Q psy13542         64 SKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        64 g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      |.++++++.|++|.. ++....|++.+|+++.||.||+++..
T Consensus       199 GV~i~~~~~v~~i~~-~~~~~~v~~~dg~~i~aD~Vv~a~G~  239 (410)
T 3ef6_A          199 GVQVELGTGVVGFSG-EGQLEQVMASDGRSFVADSALICVGA  239 (410)
T ss_dssp             TCEEECSCCEEEEEC-SSSCCEEEETTSCEEECSEEEECSCE
T ss_pred             CCEEEeCCEEEEEec-cCcEEEEEECCCCEEEcCEEEEeeCC
Confidence            458999999999987 55445788899999999999999854

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=95.12  E-value=0.042  Score=44.92  Aligned_cols=40  Identities=13%  Similarity=0.318  Sum_probs=34.2

Q ss_pred             cceEEcCCceEEEEecCC-CcEEEEeCCCcEEEcCEEEEecC
Q psy13542         64 SKKLLLKKEVTKINWEDP-KGVVVTCADGTQYSADRILITVS  104 (147)
Q Consensus        64 g~~i~l~~~V~~I~~~~~-~~v~v~~~~g~~~~ad~VI~t~P  104 (147)
                      |.+++++++|++|.. .+ +.+.|++.+|+++.||.||+++.
T Consensus       249 GV~i~~~~~v~~i~~-~~~~~~~v~~~~G~~i~~D~vv~a~G  289 (495)
T 2wpf_A          249 GIEIMTNENPAKVSL-NTDGSKHVTFESGKTLDVDVVMMAIG  289 (495)
T ss_dssp             TCEEEESCCEEEEEE-CTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             CCEEEeCCEEEEEEE-cCCceEEEEECCCcEEEcCEEEECCC
Confidence            469999999999987 54 34788888998999999999984

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=95.03  E-value=0.04  Score=44.58  Aligned_cols=40  Identities=23%  Similarity=0.332  Sum_probs=34.6

Q ss_pred             cceEEcCCceEEEEecCCCcEEEEeCCCc-EEEcCEEEEecC
Q psy13542         64 SKKLLLKKEVTKINWEDPKGVVVTCADGT-QYSADRILITVS  104 (147)
Q Consensus        64 g~~i~l~~~V~~I~~~~~~~v~v~~~~g~-~~~ad~VI~t~P  104 (147)
                      |.+++++++|++|.. .++++.|++.+|+ ++.+|.||+|+.
T Consensus       221 gv~i~~~~~v~~i~~-~~~~~~v~~~~G~~~i~~D~vv~a~G  261 (463)
T 2r9z_A          221 GIETHLEFAVAALER-DAQGTTLVAQDGTRLEGFDSVIWAVG  261 (463)
T ss_dssp             TCEEESSCCEEEEEE-ETTEEEEEETTCCEEEEESEEEECSC
T ss_pred             CCEEEeCCEEEEEEE-eCCeEEEEEeCCcEEEEcCEEEECCC
Confidence            458999999999987 5556888889998 899999999974

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=94.96  E-value=0.06  Score=40.80  Aligned_cols=40  Identities=13%  Similarity=0.072  Sum_probs=35.3

Q ss_pred             ceEEcCCceEEEEecCCCcEE-EEeCCCcEEEcCEEEEecChh
Q psy13542         65 KKLLLKKEVTKINWEDPKGVV-VTCADGTQYSADRILITVSLG  106 (147)
Q Consensus        65 ~~i~l~~~V~~I~~~~~~~v~-v~~~~g~~~~ad~VI~t~P~~  106 (147)
                      .+++++++|++|.. .++++. |++.+| ++.||+||+|+-..
T Consensus        91 ~~~~~~~~v~~i~~-~~~~~~~v~~~~g-~~~~d~vV~AtG~~  131 (357)
T 4a9w_A           91 LPVLRPIRVQRVSH-FGERLRVVARDGR-QWLARAVISATGTW  131 (357)
T ss_dssp             CCEECSCCEEEEEE-ETTEEEEEETTSC-EEEEEEEEECCCSG
T ss_pred             CEEEcCCEEEEEEE-CCCcEEEEEeCCC-EEEeCEEEECCCCC
Confidence            37999999999998 777888 998888 89999999999753

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=94.85  E-value=0.045  Score=44.01  Aligned_cols=40  Identities=10%  Similarity=0.176  Sum_probs=34.0

Q ss_pred             cceEEcCCceEEEEecCCC-cEEEEeCCCcEEEcCEEEEecC
Q psy13542         64 SKKLLLKKEVTKINWEDPK-GVVVTCADGTQYSADRILITVS  104 (147)
Q Consensus        64 g~~i~l~~~V~~I~~~~~~-~v~v~~~~g~~~~ad~VI~t~P  104 (147)
                      |.+++++++|++|.. .++ .+.|++.+|+++.+|.||+|+.
T Consensus       222 Gv~i~~~~~v~~i~~-~~~~~~~v~~~~g~~i~~D~vv~a~G  262 (450)
T 1ges_A          222 GPQLHTNAIPKAVVK-NTDGSLTLELEDGRSETVDCLIWAIG  262 (450)
T ss_dssp             SCEEECSCCEEEEEE-CTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             CCEEEeCCEEEEEEE-eCCcEEEEEECCCcEEEcCEEEECCC
Confidence            458999999999997 544 4788888998999999999983

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=94.82  E-value=0.067  Score=40.27  Aligned_cols=55  Identities=15%  Similarity=0.178  Sum_probs=43.8

Q ss_pred             HHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCC-cEEEEeCCCcEEEcCEEEEecCh
Q psy13542         44 YGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPK-GVVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        44 ~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~-~v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      ...+.+.+.+.+...     |.+++++++|++|.. .++ .+.|++.+|+ +.+|+||+|+-.
T Consensus        66 ~~~~~~~~~~~~~~~-----~~~~~~~~~v~~i~~-~~~~~~~v~~~~g~-~~~d~vVlAtG~  121 (332)
T 3lzw_A           66 AQELINNLKEQMAKF-----DQTICLEQAVESVEK-QADGVFKLVTNEET-HYSKTVIITAGN  121 (332)
T ss_dssp             HHHHHHHHHHHHTTS-----CCEEECSCCEEEEEE-CTTSCEEEEESSEE-EEEEEEEECCTT
T ss_pred             HHHHHHHHHHHHHHh-----CCcEEccCEEEEEEE-CCCCcEEEEECCCE-EEeCEEEECCCC
Confidence            356777777766543     358999999999998 544 7899999885 999999999876

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=94.67  E-value=0.039  Score=47.92  Aligned_cols=56  Identities=23%  Similarity=0.182  Sum_probs=44.0

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcE-EEEeCCCcEEEcCEEEEecChhH
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGV-VVTCADGTQYSADRILITVSLGV  107 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v-~v~~~~g~~~~ad~VI~t~P~~~  107 (147)
                      ..+.++|++.+...     |.+|+.+++|++|.. +++++ .|.+.+| +++||+||+|+-...
T Consensus       151 ~~l~~~L~~~a~~~-----Gv~i~~~t~V~~i~~-~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s  207 (830)
T 1pj5_A          151 ARAVQLLIKRTESA-----GVTYRGSTTVTGIEQ-SGGRVTGVQTADG-VIPADIVVSCAGFWG  207 (830)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEECSCCEEEEEE-ETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHc-----CCEEECCceEEEEEE-eCCEEEEEEECCc-EEECCEEEECCccch
Confidence            46777777776543     469999999999998 66665 5778888 899999999996653

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=94.67  E-value=0.052  Score=43.74  Aligned_cols=53  Identities=19%  Similarity=0.330  Sum_probs=39.5

Q ss_pred             HHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCc-EEEE-eCCCcEEEcCEEEEecCh
Q psy13542         46 NVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKG-VVVT-CADGTQYSADRILITVSL  105 (147)
Q Consensus        46 ~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~-v~v~-~~~g~~~~ad~VI~t~P~  105 (147)
                      .+.+.+.+.+...     |.+++++++|++|.. .+++ +.|+ +.+|+ +.||.||+|+..
T Consensus       212 ~~~~~l~~~l~~~-----Gv~i~~~~~v~~i~~-~~~~~~~v~~~~~g~-i~aD~Vv~a~G~  266 (463)
T 4dna_A          212 DMRRGLHAAMEEK-----GIRILCEDIIQSVSA-DADGRRVATTMKHGE-IVADQVMLALGR  266 (463)
T ss_dssp             HHHHHHHHHHHHT-----TCEEECSCCEEEEEE-CTTSCEEEEESSSCE-EEESEEEECSCE
T ss_pred             HHHHHHHHHHHHC-----CCEEECCCEEEEEEE-cCCCEEEEEEcCCCe-EEeCEEEEeeCc
Confidence            3444454444432     469999999999998 5444 7888 88997 999999999854

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.65  E-value=0.069  Score=43.56  Aligned_cols=54  Identities=19%  Similarity=0.265  Sum_probs=40.1

Q ss_pred             HHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCC-CcEEEEeCCCcE-EEcCEEEEecCh
Q psy13542         46 NVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDP-KGVVVTCADGTQ-YSADRILITVSL  105 (147)
Q Consensus        46 ~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~-~~v~v~~~~g~~-~~ad~VI~t~P~  105 (147)
                      .+.+.+.+.+...     |.+++++++|++|.. .+ +.+.|++.+|++ +.+|.||+++..
T Consensus       218 ~~~~~l~~~l~~~-----gv~i~~~~~v~~i~~-~~~~~~~v~~~~g~~~~~~D~vi~a~G~  273 (500)
T 1onf_A          218 SVINVLENDMKKN-----NINIVTFADVVEIKK-VSDKNLSIHLSDGRIYEHFDHVIYCVGR  273 (500)
T ss_dssp             HHHHHHHHHHHHT-----TCEEECSCCEEEEEE-SSTTCEEEEETTSCEEEEESEEEECCCB
T ss_pred             hhHHHHHHHHHhC-----CCEEEECCEEEEEEE-cCCceEEEEECCCcEEEECCEEEECCCC
Confidence            3444444544433     468999999999987 44 347888889987 999999999853

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=94.62  E-value=0.049  Score=44.17  Aligned_cols=40  Identities=10%  Similarity=0.189  Sum_probs=33.5

Q ss_pred             cceEEcCCceEEEEecCCCc--EEEEeCCC-cEEEcCEEEEecC
Q psy13542         64 SKKLLLKKEVTKINWEDPKG--VVVTCADG-TQYSADRILITVS  104 (147)
Q Consensus        64 g~~i~l~~~V~~I~~~~~~~--v~v~~~~g-~~~~ad~VI~t~P  104 (147)
                      |.+++++++|++|.. .+++  +.|++.+| +++.+|.||+|+.
T Consensus       240 Gv~i~~~~~v~~i~~-~~~~~~~~v~~~~G~~~i~~D~vv~a~G  282 (479)
T 2hqm_A          240 GINVHKLSKIVKVEK-NVETDKLKIHMNDSKSIDDVDELIWTIG  282 (479)
T ss_dssp             TCEEECSCCEEEEEE-CC-CCCEEEEETTSCEEEEESEEEECSC
T ss_pred             CeEEEeCCEEEEEEE-cCCCcEEEEEECCCcEEEEcCEEEECCC
Confidence            458999999999987 5444  78888899 7899999999985

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=94.41  E-value=0.054  Score=44.37  Aligned_cols=56  Identities=14%  Similarity=0.079  Sum_probs=41.8

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCc---EEEcCEEEEecChh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGT---QYSADRILITVSLG  106 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~---~~~ad~VI~t~P~~  106 (147)
                      ..+-+.|.+.+...     |.+|+++++|++|.. ++++|+|++.+|.   +++||.||.|--..
T Consensus       107 ~~l~~~L~~~~~~~-----gv~v~~~~~v~~i~~-~~~~v~v~~~~~~g~~~~~a~~vVgADG~~  165 (499)
T 2qa2_A          107 STTESVLEEWALGR-----GAELLRGHTVRALTD-EGDHVVVEVEGPDGPRSLTTRYVVGCDGGR  165 (499)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEEESCEEEEEEE-CSSCEEEEEECSSCEEEEEEEEEEECCCTT
T ss_pred             HHHHHHHHHHHHhC-----CCEEEcCCEEEEEEE-eCCEEEEEEEcCCCcEEEEeCEEEEccCcc
Confidence            34455555544322     348999999999998 7788999887775   79999999987654

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=94.40  E-value=0.019  Score=45.45  Aligned_cols=55  Identities=22%  Similarity=0.280  Sum_probs=38.8

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceE---------EEEecCCCcEEEEeCCCcEEEcCEEEEecChh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVT---------KINWEDPKGVVVTCADGTQYSADRILITVSLG  106 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~---------~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~~  106 (147)
                      ..+.+.|.+.+...     |.+++.+++|+         +|.. +++++.|++.+| +++||.||+|+-..
T Consensus       172 ~~l~~~L~~~~~~~-----Gv~i~~~~~v~~~~g~~~~~~i~~-~~~~v~v~~~~g-~i~a~~VV~A~G~~  235 (405)
T 3c4n_A          172 GSLALLAAQQAIGQ-----GAGLLLNTRAELVPGGVRLHRLTV-TNTHQIVVHETR-QIRAGVIIVAAGAA  235 (405)
T ss_dssp             HHHHHHHHHHHHTT-----TCEEECSCEEEEETTEEEEECBCC--------CBCCE-EEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHC-----CCEEEcCCEEEeccccccccceEe-eCCeEEEEECCc-EEECCEEEECCCcc
Confidence            55777787777543     46899999999         8887 666777777777 89999999999765

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=94.39  E-value=0.1  Score=43.38  Aligned_cols=40  Identities=15%  Similarity=0.189  Sum_probs=34.5

Q ss_pred             eEEcCCceEEEEecCC-CcEEEEeCCCcEEEcCEEEEecCh
Q psy13542         66 KLLLKKEVTKINWEDP-KGVVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        66 ~i~l~~~V~~I~~~~~-~~v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      .++++++|++++++.+ +.++|++.+|+++.||+||+|+-.
T Consensus       117 ~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~  157 (549)
T 4ap3_A          117 DIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGP  157 (549)
T ss_dssp             GEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCS
T ss_pred             cEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCC
Confidence            7999999999998332 368999999999999999999974

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=94.33  E-value=0.057  Score=42.14  Aligned_cols=57  Identities=16%  Similarity=0.102  Sum_probs=41.0

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEe-CCCc--EEEcCEEEEecChh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTC-ADGT--QYSADRILITVSLG  106 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~-~~g~--~~~ad~VI~t~P~~  106 (147)
                      ..+.+.|.+.+...     |.+|+++++|++|..++++++.|++ .+|+  +++||.||.|.-..
T Consensus       103 ~~l~~~L~~~~~~~-----g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~AdG~~  162 (394)
T 1k0i_A          103 TEVTRDLMEAREAC-----GATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFH  162 (394)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTT
T ss_pred             HHHHHHHHHHHHhc-----CCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEECCCCC
Confidence            44555565555322     3589999999999873345677876 6886  79999999997654

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=94.33  E-value=0.056  Score=43.28  Aligned_cols=41  Identities=22%  Similarity=0.131  Sum_probs=34.2

Q ss_pred             ceEEcCCceEEEEecCCCcEEEEeCC---Cc---EEEcCEEEEecChh
Q psy13542         65 KKLLLKKEVTKINWEDPKGVVVTCAD---GT---QYSADRILITVSLG  106 (147)
Q Consensus        65 ~~i~l~~~V~~I~~~~~~~v~v~~~~---g~---~~~ad~VI~t~P~~  106 (147)
                      ..|+++++|++|.. .++++.|++.+   |+   ++.||+||+|+-..
T Consensus       130 ~~i~~~t~V~~v~~-~~~~~~V~~~~~~~G~~~~~~~~d~VVvAtG~~  176 (447)
T 2gv8_A          130 PFIKLATDVLDIEK-KDGSWVVTYKGTKAGSPISKDIFDAVSICNGHY  176 (447)
T ss_dssp             GGEECSEEEEEEEE-ETTEEEEEEEESSTTCCEEEEEESEEEECCCSS
T ss_pred             CeEEeCCEEEEEEe-CCCeEEEEEeecCCCCeeEEEEeCEEEECCCCC
Confidence            37999999999998 66778887765   76   79999999999763

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=94.27  E-value=0.15  Score=39.06  Aligned_cols=40  Identities=20%  Similarity=0.203  Sum_probs=34.5

Q ss_pred             ceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecChh
Q psy13542         65 KKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLG  106 (147)
Q Consensus        65 ~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~~  106 (147)
                      .+++++++|++|.. .++++.|++.+| ++.||+||+|+-..
T Consensus       103 v~i~~~~~v~~i~~-~~~~~~v~~~~g-~~~~d~vVlAtG~~  142 (369)
T 3d1c_A          103 LNIFENTVVTNISA-DDAYYTIATTTE-TYHADYIFVATGDY  142 (369)
T ss_dssp             CEEECSCCEEEEEE-CSSSEEEEESSC-CEEEEEEEECCCST
T ss_pred             CeEEeCCEEEEEEE-CCCeEEEEeCCC-EEEeCEEEECCCCC
Confidence            38999999999998 667888988887 69999999998754

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=94.27  E-value=0.11  Score=42.90  Aligned_cols=41  Identities=12%  Similarity=0.253  Sum_probs=34.9

Q ss_pred             ceEEcCCceEEEEecCC-CcEEEEeCCCcEEEcCEEEEecCh
Q psy13542         65 KKLLLKKEVTKINWEDP-KGVVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        65 ~~i~l~~~V~~I~~~~~-~~v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      ..|+++++|+++.++.+ +.++|++.+|++++||+||+|+-.
T Consensus       111 ~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~  152 (542)
T 1w4x_A          111 SGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQ  152 (542)
T ss_dssp             GGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCS
T ss_pred             ceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCC
Confidence            47999999999998333 468999999989999999999964

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=94.21  E-value=0.091  Score=39.27  Aligned_cols=55  Identities=20%  Similarity=0.328  Sum_probs=41.0

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecChh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLG  106 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~~  106 (147)
                      ..+.+.+.+.+...     |.++++ +.|.+|.. .++.+.|++.+|+++.+|++|+|+-..
T Consensus        70 ~~~~~~~~~~~~~~-----~v~~~~-~~v~~i~~-~~~~~~v~~~~g~~~~~d~lvlAtG~~  124 (323)
T 3f8d_A           70 SDMIKVFNKHIEKY-----EVPVLL-DIVEKIEN-RGDEFVVKTKRKGEFKADSVILGIGVK  124 (323)
T ss_dssp             HHHHHHHHHHHHTT-----TCCEEE-SCEEEEEE-C--CEEEEESSSCEEEEEEEEECCCCE
T ss_pred             HHHHHHHHHHHHHc-----CCEEEE-EEEEEEEe-cCCEEEEEECCCCEEEcCEEEECcCCC
Confidence            45666665555432     347888 99999998 777899999998899999999998654

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=94.18  E-value=0.11  Score=43.04  Aligned_cols=40  Identities=28%  Similarity=0.287  Sum_probs=34.5

Q ss_pred             eEEcCCceEEEEecCC-CcEEEEeCCCcEEEcCEEEEecCh
Q psy13542         66 KLLLKKEVTKINWEDP-KGVVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        66 ~i~l~~~V~~I~~~~~-~~v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      .|+++++|+++.++.+ +.++|++.+|+++.||+||+|+-.
T Consensus       105 ~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~  145 (540)
T 3gwf_A          105 HFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGL  145 (540)
T ss_dssp             GEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCS
T ss_pred             eeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcc
Confidence            7999999999998333 368999999989999999999974

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=94.11  E-value=0.12  Score=38.75  Aligned_cols=56  Identities=11%  Similarity=0.067  Sum_probs=41.3

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecC--CCcEEEEeCCCcEEEcCEEEEecCh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWED--PKGVVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~--~~~v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      ..+.+.+.+.+...     |.+++++++|+.|..+.  ++.+.|++.+|+++.+|++|+|+-.
T Consensus        56 ~~~~~~~~~~~~~~-----~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~  113 (310)
T 1fl2_A           56 QKLAGALKVHVDEY-----DVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGA  113 (310)
T ss_dssp             HHHHHHHHHHHHTS-----CEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCE
T ss_pred             HHHHHHHHHHHHHc-----CCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCC
Confidence            45555555555332     35899999999998621  2368888888989999999999865

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=94.08  E-value=0.056  Score=44.29  Aligned_cols=56  Identities=16%  Similarity=0.036  Sum_probs=41.3

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCc---EEEcCEEEEecChh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGT---QYSADRILITVSLG  106 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~---~~~ad~VI~t~P~~  106 (147)
                      ..+-+.|.+.+...     |.+|+++++|++|.. ++++|+|++.++.   +++||.||.|--..
T Consensus       106 ~~l~~~L~~~~~~~-----gv~v~~~~~v~~i~~-~~~~v~v~~~~~~g~~~~~a~~vVgADG~~  164 (500)
T 2qa1_A          106 SVTETHLEQWATGL-----GADIRRGHEVLSLTD-DGAGVTVEVRGPEGKHTLRAAYLVGCDGGR  164 (500)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEEETCEEEEEEE-ETTEEEEEEEETTEEEEEEESEEEECCCTT
T ss_pred             HHHHHHHHHHHHHC-----CCEEECCcEEEEEEE-cCCeEEEEEEcCCCCEEEEeCEEEECCCcc
Confidence            34445555444322     348999999999998 7778888887764   79999999987654

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=94.07  E-value=0.084  Score=42.53  Aligned_cols=40  Identities=15%  Similarity=0.285  Sum_probs=31.6

Q ss_pred             cceEEcCCceEEEEecCCCcEEEEeC--CC--cEEEcCEEEEecC
Q psy13542         64 SKKLLLKKEVTKINWEDPKGVVVTCA--DG--TQYSADRILITVS  104 (147)
Q Consensus        64 g~~i~l~~~V~~I~~~~~~~v~v~~~--~g--~~~~ad~VI~t~P  104 (147)
                      |.+++++++|++|.. +++++.|++.  +|  +++.+|.||+|+.
T Consensus       230 gv~i~~~~~v~~i~~-~~~~~~v~~~~~~g~~~~i~~D~vv~a~G  273 (468)
T 2qae_A          230 KMKFMTSTKVVGGTN-NGDSVSLEVEGKNGKRETVTCEALLVSVG  273 (468)
T ss_dssp             CCEEECSCEEEEEEE-CSSSEEEEEECC---EEEEEESEEEECSC
T ss_pred             CcEEEeCCEEEEEEE-cCCeEEEEEEcCCCceEEEECCEEEECCC
Confidence            458999999999998 6666777765  66  6799999999984

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=94.06  E-value=0.084  Score=42.32  Aligned_cols=55  Identities=15%  Similarity=0.283  Sum_probs=38.7

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecCh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      ..+.+.+.+.+...     |.+++++++|++|.. .++++.....+|+++.||.||+++..
T Consensus       191 ~~~~~~l~~~l~~~-----Gv~i~~~~~v~~i~~-~~~~v~~v~~~g~~i~~D~vv~a~G~  245 (452)
T 2cdu_A          191 KEFTDILAKDYEAH-----GVNLVLGSKVAAFEE-VDDEIITKTLDGKEIKSDIAILCIGF  245 (452)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEEESSCEEEEEE-ETTEEEEEETTSCEEEESEEEECCCE
T ss_pred             hhHHHHHHHHHHHC-----CCEEEcCCeeEEEEc-CCCeEEEEEeCCCEEECCEEEECcCC
Confidence            34445555555433     469999999999986 55666533347889999999999853

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=94.03  E-value=0.087  Score=42.46  Aligned_cols=54  Identities=28%  Similarity=0.300  Sum_probs=39.3

Q ss_pred             HHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCC---cEEEcCEEEEecCh
Q psy13542         46 NVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADG---TQYSADRILITVSL  105 (147)
Q Consensus        46 ~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g---~~~~ad~VI~t~P~  105 (147)
                      .+.+.+.+.+...     |.+++++++|++|.. +++++.++..++   +++.+|.||+++..
T Consensus       222 ~~~~~l~~~l~~~-----Gv~v~~~~~v~~i~~-~~~~~~v~~~~~~g~~~~~~D~vi~a~G~  278 (476)
T 3lad_A          222 QVAKEAQKILTKQ-----GLKILLGARVTGTEV-KNKQVTVKFVDAEGEKSQAFDKLIVAVGR  278 (476)
T ss_dssp             HHHHHHHHHHHHT-----TEEEEETCEEEEEEE-CSSCEEEEEESSSEEEEEEESEEEECSCE
T ss_pred             HHHHHHHHHHHhC-----CCEEEECCEEEEEEE-cCCEEEEEEEeCCCcEEEECCEEEEeeCC
Confidence            3444444444332     468999999999998 777777776654   67999999999864

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=93.90  E-value=0.068  Score=43.32  Aligned_cols=53  Identities=17%  Similarity=0.248  Sum_probs=39.5

Q ss_pred             HHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCC----CcEEEcCEEEEecC
Q psy13542         46 NVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCAD----GTQYSADRILITVS  104 (147)
Q Consensus        46 ~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~----g~~~~ad~VI~t~P  104 (147)
                      .+.+.+.+.+...     |.+++++++|.+|.. +++++.|++.+    |+++.+|.||+++.
T Consensus       227 ~~~~~l~~~l~~~-----gV~i~~~~~v~~i~~-~~~~~~v~~~~~~~~g~~~~~D~vv~a~G  283 (482)
T 1ojt_A          227 DLVKVWQKQNEYR-----FDNIMVNTKTVAVEP-KEDGVYVTFEGANAPKEPQRYDAVLVAAG  283 (482)
T ss_dssp             HHHHHHHHHHGGG-----EEEEECSCEEEEEEE-ETTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred             HHHHHHHHHHHhc-----CCEEEECCEEEEEEE-cCCeEEEEEeccCCCceEEEcCEEEECcC
Confidence            3444555555433     568999999999987 55667777766    77899999999984

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=93.86  E-value=0.096  Score=40.75  Aligned_cols=53  Identities=17%  Similarity=0.205  Sum_probs=39.8

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecChh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLG  106 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~~  106 (147)
                      ..+.+.|.+.+...     |.+|+++++|++|.. +  + .|++.+|++++||.||.|.-..
T Consensus       107 ~~l~~~L~~~~~~~-----gv~i~~~~~v~~i~~-~--~-~v~~~~g~~~~ad~vV~AdG~~  159 (379)
T 3alj_A          107 SHLHDALVNRARAL-----GVDISVNSEAVAADP-V--G-RLTLQTGEVLEADLIVGADGVG  159 (379)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEESSCCEEEEET-T--T-EEEETTSCEEECSEEEECCCTT
T ss_pred             HHHHHHHHHHHHhc-----CCEEEeCCEEEEEEe-C--C-EEEECCCCEEEcCEEEECCCcc
Confidence            45555555555432     358999999999986 3  4 7888889899999999998654

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=93.83  E-value=0.13  Score=37.97  Aligned_cols=56  Identities=14%  Similarity=0.223  Sum_probs=41.5

Q ss_pred             HHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecCh
Q psy13542         44 YGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        44 ~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      ...+.+.+.+.+...   + +..+ ++..|+.|.. .++++.|++.+|+++.+|+||+|+-.
T Consensus        55 ~~~~~~~~~~~~~~~---~-~v~~-~~~~v~~i~~-~~~~~~v~~~~g~~~~~d~vviAtG~  110 (297)
T 3fbs_A           55 PGEIIAEARRQIERY---P-TIHW-VEGRVTDAKG-SFGEFIVEIDGGRRETAGRLILAMGV  110 (297)
T ss_dssp             HHHHHHHHHHHHTTC---T-TEEE-EESCEEEEEE-ETTEEEEEETTSCEEEEEEEEECCCC
T ss_pred             HHHHHHHHHHHHHhc---C-CeEE-EEeEEEEEEE-cCCeEEEEECCCCEEEcCEEEECCCC
Confidence            356677776666532   0 1233 3679999998 66779999999989999999999865

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=93.80  E-value=0.057  Score=43.00  Aligned_cols=56  Identities=9%  Similarity=0.296  Sum_probs=42.1

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEec--------------CCCcE-EEEeCCCcEE--EcCEEEEecChh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWE--------------DPKGV-VVTCADGTQY--SADRILITVSLG  106 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~--------------~~~~v-~v~~~~g~~~--~ad~VI~t~P~~  106 (147)
                      ..+.+.|.+.+...     |.+++.+++|++|..+              +++++ .|.+.+| ++  .||.||+|+-..
T Consensus       181 ~~l~~~L~~~~~~~-----Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~  253 (448)
T 3axb_A          181 EKVVDYYYRRASGA-----GVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVW  253 (448)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHhC-----CCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcC
Confidence            46777777776543     4699999999999861              23344 6778888 68  999999999754

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=93.73  E-value=0.18  Score=37.79  Aligned_cols=55  Identities=16%  Similarity=0.240  Sum_probs=37.8

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcE-EEEeCC----C--cEEEcCEEEEecCh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGV-VVTCAD----G--TQYSADRILITVSL  105 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v-~v~~~~----g--~~~~ad~VI~t~P~  105 (147)
                      ..+.+.+.+.+...     |.+++++++|++|.. +++++ .|++.+    |  +++.+|.||++++.
T Consensus       184 ~~~~~~l~~~l~~~-----gv~i~~~~~v~~i~~-~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~  245 (320)
T 1trb_A          184 KILIKRLMDKVENG-----NIILHTNRTLEEVTG-DQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGH  245 (320)
T ss_dssp             HHHHHHHHHHHHTS-----SEEEECSCEEEEEEE-CSSSEEEEEEECCTTCCCCEEEECSEEEECSCE
T ss_pred             HHHHHHHHHhcccC-----CeEEEcCceeEEEEc-CCCceEEEEEEeccCCCceEEEEcCEEEEEeCC
Confidence            34555665555433     469999999999997 55443 244332    4  57999999999864

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=93.70  E-value=0.068  Score=41.92  Aligned_cols=41  Identities=12%  Similarity=0.100  Sum_probs=35.8

Q ss_pred             cceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecCh
Q psy13542         64 SKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        64 g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      |.++++++.|+.++. +++...|.+.+|+++.+|.++++.|.
T Consensus       216 gi~v~~~~~v~~v~~-~~~~~~v~~~~g~~i~~D~vi~~~g~  256 (401)
T 3vrd_B          216 LIEWHPGPDAAVVKT-DTEAMTVETSFGETFKAAVINLIPPQ  256 (401)
T ss_dssp             SEEEECTTTTCEEEE-ETTTTEEEETTSCEEECSEEEECCCE
T ss_pred             CcEEEeCceEEEEEe-cccceEEEcCCCcEEEeeEEEEecCc
Confidence            568999999999988 66677888999999999999999864

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=93.70  E-value=0.13  Score=38.55  Aligned_cols=54  Identities=15%  Similarity=0.182  Sum_probs=40.6

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecCh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      ..+.+.+.+.+...     |.++++ ++|.+|.. .++++.|++.+|+++.+|+||+|+-.
T Consensus        59 ~~~~~~l~~~~~~~-----~v~~~~-~~v~~i~~-~~~~~~v~~~~g~~~~~~~vv~AtG~  112 (311)
T 2q0l_A           59 LDFMQPWQEQCFRF-----GLKHEM-TAVQRVSK-KDSHFVILAEDGKTFEAKSVIIATGG  112 (311)
T ss_dssp             HHHHHHHHHHHHTT-----SCEEEC-SCEEEEEE-ETTEEEEEETTSCEEEEEEEEECCCE
T ss_pred             HHHHHHHHHHHHHc-----CCEEEE-EEEEEEEE-cCCEEEEEEcCCCEEECCEEEECCCC
Confidence            45566665555432     347887 79999998 66678888888889999999999974

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=93.68  E-value=0.13  Score=42.28  Aligned_cols=42  Identities=12%  Similarity=0.323  Sum_probs=34.8

Q ss_pred             cceEEcCCceEEEEec------------------CCCcEEEEeCCCcEEEcCEEEEecCh
Q psy13542         64 SKKLLLKKEVTKINWE------------------DPKGVVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        64 g~~i~l~~~V~~I~~~------------------~~~~v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      |.++++++.|++|..+                  .++++.+.+.+|+++.||.||+++..
T Consensus       206 GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~  265 (565)
T 3ntd_A          206 GVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGV  265 (565)
T ss_dssp             TCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCE
T ss_pred             CCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCC
Confidence            4589999999999862                  25567888889999999999999853

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=93.59  E-value=0.11  Score=43.13  Aligned_cols=55  Identities=15%  Similarity=0.132  Sum_probs=40.3

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCC-CcE---EEEeCCCc--EEEcCEEEEecCh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDP-KGV---VVTCADGT--QYSADRILITVSL  105 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~-~~v---~v~~~~g~--~~~ad~VI~t~P~  105 (147)
                      ..+.+.|.+.+...     |.+|+++++|++|.. ++ ++|   .+...+|+  ++.||.||+|+-.
T Consensus       255 ~~l~~~L~~~~~~~-----gv~i~~~~~v~~l~~-~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg  315 (571)
T 1y0p_A          255 AHVVQVLYDNAVKR-----NIDLRMNTRGIEVLK-DDKGTVKGILVKGMYKGYYWVKADAVILATGG  315 (571)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEESSEEEEEEEE-CTTSCEEEEEEEETTTEEEEEECSEEEECCCC
T ss_pred             HHHHHHHHHHHHhc-----CCEEEeCCEeeEeEE-cCCCeEEEEEEEeCCCcEEEEECCeEEEeCCC
Confidence            56777777766543     469999999999998 54 543   44444675  6899999999854

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=93.58  E-value=0.14  Score=41.63  Aligned_cols=56  Identities=14%  Similarity=0.176  Sum_probs=41.2

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCc--EEEEeCCCcEEEcCEEEEecChhH
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKG--VVVTCADGTQYSADRILITVSLGV  107 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~--v~v~~~~g~~~~ad~VI~t~P~~~  107 (147)
                      ..+.+.|.+.+...     |.+++.+ +|++|.. ++++  +.|++.+|++++||.||.|.-...
T Consensus       173 ~~l~~~L~~~a~~~-----gv~~~~~-~v~~i~~-~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S  230 (511)
T 2weu_A          173 DEVARYLSEYAIAR-----GVRHVVD-DVQHVGQ-DERGWISGVHTKQHGEISGDLFVDCTGFRG  230 (511)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEEEC-CEEEEEE-CTTSCEEEEEESSSCEEECSEEEECCGGGC
T ss_pred             HHHHHHHHHHHHHC-----CCEEEEC-eEeEEEE-cCCCCEEEEEECCCCEEEcCEEEECCCcch
Confidence            34555555554322     3589999 9999987 5444  678888898899999999987753

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=93.55  E-value=0.058  Score=44.22  Aligned_cols=56  Identities=11%  Similarity=0.073  Sum_probs=42.2

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCC----cEEEEeCCC---cEEEcCEEEEecChh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPK----GVVVTCADG---TQYSADRILITVSLG  106 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~----~v~v~~~~g---~~~~ad~VI~t~P~~  106 (147)
                      ..+.+.|.+.+...     |.+|+++++|++|.. +++    ++++++.++   .+++||.||.|.-..
T Consensus       120 ~~l~~~L~~~a~~~-----gv~i~~~~~v~~i~~-~~~~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~~  182 (535)
T 3ihg_A          120 DKLEPILLAQARKH-----GGAIRFGTRLLSFRQ-HDDDAGAGVTARLAGPDGEYDLRAGYLVGADGNR  182 (535)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEESSCEEEEEEE-ECGGGCSEEEEEEEETTEEEEEEEEEEEECCCTT
T ss_pred             HHHHHHHHHHHHhC-----CCEEEeCCEEEEEEE-CCCCccccEEEEEEcCCCeEEEEeCEEEECCCCc
Confidence            44555555555432     358999999999998 666    888887766   689999999998654

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=93.53  E-value=0.094  Score=42.32  Aligned_cols=40  Identities=18%  Similarity=0.301  Sum_probs=33.1

Q ss_pred             cceEEcCCceEEEEecCCCcEEEEeC-C--Cc--EEEcCEEEEecC
Q psy13542         64 SKKLLLKKEVTKINWEDPKGVVVTCA-D--GT--QYSADRILITVS  104 (147)
Q Consensus        64 g~~i~l~~~V~~I~~~~~~~v~v~~~-~--g~--~~~ad~VI~t~P  104 (147)
                      |.+++++++|++|.. +++++.|++. +  |+  ++.+|.||+|+.
T Consensus       224 gV~i~~~~~v~~i~~-~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G  268 (464)
T 2eq6_A          224 GIRVRTKTKAVGYEK-KKDGLHVRLEPAEGGEGEEVVVDKVLVAVG  268 (464)
T ss_dssp             TCEEECSEEEEEEEE-ETTEEEEEEEETTCCSCEEEEESEEEECSC
T ss_pred             CCEEEcCCEEEEEEE-eCCEEEEEEeecCCCceeEEEcCEEEECCC
Confidence            458999999999997 6666777765 6  76  899999999984

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=93.46  E-value=0.066  Score=42.02  Aligned_cols=56  Identities=21%  Similarity=0.231  Sum_probs=40.0

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCc--EEEEeCCCc--EEEcCEEEEecChh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKG--VVVTCADGT--QYSADRILITVSLG  106 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~--v~v~~~~g~--~~~ad~VI~t~P~~  106 (147)
                      ..+.+.|.+.+...     |.+|+.+++|++|.. .+++  +.|.+.+|+  +++||.||.|.-..
T Consensus       106 ~~~~~~L~~~a~~~-----gv~i~~~~~v~~i~~-~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~  165 (421)
T 3nix_A          106 GNFDKTLADEAARQ-----GVDVEYEVGVTDIKF-FGTDSVTTIEDINGNKREIEARFIIDASGYG  165 (421)
T ss_dssp             HHHHHHHHHHHHHH-----TCEEECSEEEEEEEE-ETTEEEEEEEETTSCEEEEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHhC-----CCEEEcCCEEEEEEE-eCCEEEEEEEcCCCCEEEEEcCEEEECCCCc
Confidence            34445555544322     358999999999998 5555  456678887  69999999998654

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=93.40  E-value=0.089  Score=43.62  Aligned_cols=56  Identities=18%  Similarity=0.143  Sum_probs=40.4

Q ss_pred             HHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCC-CcE---EEEeCCCc--EEEcCEEEEecCh
Q psy13542         44 YGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDP-KGV---VVTCADGT--QYSADRILITVSL  105 (147)
Q Consensus        44 ~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~-~~v---~v~~~~g~--~~~ad~VI~t~P~  105 (147)
                      -..+.+.|.+.+...     |.+|+++++|++|.. ++ ++|   .+...+|+  ++.||.||+|+-.
T Consensus       249 ~~~l~~~L~~~~~~~-----gv~i~~~~~v~~l~~-~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg  310 (566)
T 1qo8_A          249 GPEIIDTLRKAAKEQ-----GIDTRLNSRVVKLVV-NDDHSVVGAVVHGKHTGYYMIGAKSVVLATGG  310 (566)
T ss_dssp             HHHHHHHHHHHHHHT-----TCCEECSEEEEEEEE-CTTSBEEEEEEEETTTEEEEEEEEEEEECCCC
T ss_pred             HHHHHHHHHHHHHhc-----CCEEEeCCEEEEEEE-CCCCcEEEEEEEeCCCcEEEEEcCEEEEecCC
Confidence            355777777766533     458999999999998 55 553   34444775  6899999999854

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=93.24  E-value=0.05  Score=45.47  Aligned_cols=56  Identities=20%  Similarity=0.109  Sum_probs=42.4

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEe--CCC-cEEEcCEEEEecChh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTC--ADG-TQYSADRILITVSLG  106 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~--~~g-~~~~ad~VI~t~P~~  106 (147)
                      ..+.+.|.+.+...     |.+|+++++|++|.. ++++++|++  .+| ++++||.||.|.-..
T Consensus       148 ~~l~~~L~~~a~~~-----gv~i~~~~~v~~l~~-~~~~v~v~~~~~~G~~~~~a~~vV~ADG~~  206 (570)
T 3fmw_A          148 SRTEALLAEHAREA-----GAEIPRGHEVTRLRQ-DAEAVEVTVAGPSGPYPVRARYGVGCDGGR  206 (570)
T ss_dssp             HHHHHHHHHHHHHH-----TEECCBSCEEEECCB-CSSCEEEEEEETTEEEEEEESEEEECSCSS
T ss_pred             HHHHHHHHHHHHhC-----CCEEEeCCEEEEEEE-cCCeEEEEEEeCCCcEEEEeCEEEEcCCCC
Confidence            44555555555322     358999999999998 778888877  678 789999999998653

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=93.22  E-value=0.13  Score=41.50  Aligned_cols=40  Identities=20%  Similarity=0.302  Sum_probs=32.5

Q ss_pred             cceEEcCCceEEEEecCCCc-EEEEe-----CCCcEEEcCEEEEecC
Q psy13542         64 SKKLLLKKEVTKINWEDPKG-VVVTC-----ADGTQYSADRILITVS  104 (147)
Q Consensus        64 g~~i~l~~~V~~I~~~~~~~-v~v~~-----~~g~~~~ad~VI~t~P  104 (147)
                      |.+++++++|++|.. ++++ +.++.     .+++++.+|.||+++.
T Consensus       234 Gv~i~~~~~v~~i~~-~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G  279 (474)
T 1zmd_A          234 GFKFKLNTKVTGATK-KSDGKIDVSIEAASGGKAEVITCDVLLVCIG  279 (474)
T ss_dssp             TCEEECSEEEEEEEE-CTTSCEEEEEEETTSCCCEEEEESEEEECSC
T ss_pred             CCEEEeCceEEEEEE-cCCceEEEEEEecCCCCceEEEcCEEEECcC
Confidence            458999999999998 5555 77763     4667899999999985

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=93.14  E-value=0.16  Score=40.56  Aligned_cols=54  Identities=20%  Similarity=0.294  Sum_probs=38.5

Q ss_pred             HHHHHHHhhCCCCCCCCCcceEEcCCceEEEEec-CCCcE-EEEeCCCcEEEcCEEEEecC
Q psy13542         46 NVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWE-DPKGV-VVTCADGTQYSADRILITVS  104 (147)
Q Consensus        46 ~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~-~~~~v-~v~~~~g~~~~ad~VI~t~P  104 (147)
                      .+.+.+.+.+...     |.+++++++|++|... .++++ .|.+.+|+++.||.||+++.
T Consensus       192 ~~~~~l~~~l~~~-----GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G  247 (431)
T 1q1r_A          192 PVSAFYEHLHREA-----GVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  247 (431)
T ss_dssp             HHHHHHHHHHHHH-----TCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             HHHHHHHHHHHhC-----CeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCC
Confidence            3444444444332     4589999999999851 23445 67888998999999999985

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=93.11  E-value=0.14  Score=42.60  Aligned_cols=54  Identities=15%  Similarity=0.007  Sum_probs=43.9

Q ss_pred             HHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEec
Q psy13542         44 YGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITV  103 (147)
Q Consensus        44 ~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~  103 (147)
                      -..+.+.+.+.+...     |..+++++.|+++.. .++++.|.+.++.++.+|.|++|+
T Consensus       262 D~ei~~~l~~~l~~~-----gi~~~~~~~v~~~~~-~~~~~~v~~~~~~~~~~D~vLvAv  315 (542)
T 4b1b_A          262 DQQCAVKVKLYMEEQ-----GVMFKNGILPKKLTK-MDDKILVEFSDKTSELYDTVLYAI  315 (542)
T ss_dssp             CHHHHHHHHHHHHHT-----TCEEEETCCEEEEEE-ETTEEEEEETTSCEEEESEEEECS
T ss_pred             chhHHHHHHHHHHhh-----cceeecceEEEEEEe-cCCeEEEEEcCCCeEEEEEEEEcc
Confidence            344556666666544     469999999999998 778899999999899999999998

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=92.96  E-value=0.13  Score=41.24  Aligned_cols=40  Identities=25%  Similarity=0.375  Sum_probs=32.6

Q ss_pred             cceEEcCCceEEEEecCCCcEEEEeC-CC--cEEEcCEEEEecC
Q psy13542         64 SKKLLLKKEVTKINWEDPKGVVVTCA-DG--TQYSADRILITVS  104 (147)
Q Consensus        64 g~~i~l~~~V~~I~~~~~~~v~v~~~-~g--~~~~ad~VI~t~P  104 (147)
                      |.+++++++|++|.. +++++.+++. +|  +++.+|.||+++.
T Consensus       226 gv~i~~~~~v~~i~~-~~~~~~v~~~~~g~~~~~~~D~vv~a~G  268 (464)
T 2a8x_A          226 GVTILTATKVESIAD-GGSQVTVTVTKDGVAQELKAEKVLQAIG  268 (464)
T ss_dssp             TCEEECSCEEEEEEE-CSSCEEEEEESSSCEEEEEESEEEECSC
T ss_pred             CCEEEeCcEEEEEEE-cCCeEEEEEEcCCceEEEEcCEEEECCC
Confidence            358999999999997 6666777764 56  6799999999984

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=92.95  E-value=0.15  Score=42.50  Aligned_cols=54  Identities=20%  Similarity=0.229  Sum_probs=39.1

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCC-Cc---EEEEeCCCc--EEEcCEEEEecC
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDP-KG---VVVTCADGT--QYSADRILITVS  104 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~-~~---v~v~~~~g~--~~~ad~VI~t~P  104 (147)
                      ..+.+.|.+.+...     |.+|+++++|++|.. ++ ++   |.+...+|+  ++.||.||+|+-
T Consensus       255 ~~l~~~L~~~~~~~-----gv~i~~~t~v~~l~~-~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtG  314 (572)
T 1d4d_A          255 AHVAQVLWDNAVKR-----GTDIRLNSRVVRILE-DASGKVTGVLVKGEYTGYYVIKADAVVIAAG  314 (572)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEESSEEEEEEEE-C--CCEEEEEEEETTTEEEEEECSEEEECCC
T ss_pred             HHHHHHHHHHHHHc-----CCeEEecCEEEEEEE-CCCCeEEEEEEEeCCCcEEEEEcCEEEEeCC
Confidence            46777777776543     469999999999987 54 54   344444674  689999999985

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=92.86  E-value=0.17  Score=40.70  Aligned_cols=53  Identities=11%  Similarity=0.208  Sum_probs=39.1

Q ss_pred             HHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecCh
Q psy13542         46 NVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        46 ~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      .+.+.+.+.+...     |.+++++++|++|.. +++.+.|.+.+ .++.+|.||+|+..
T Consensus       217 ~~~~~l~~~l~~~-----Gv~i~~~~~v~~i~~-~~~~~~v~~~~-~~i~aD~Vv~a~G~  269 (467)
T 1zk7_A          217 AIGEAVTAAFRAE-----GIEVLEHTQASQVAH-MDGEFVLTTTH-GELRADKLLVATGR  269 (467)
T ss_dssp             HHHHHHHHHHHHT-----TCEEETTCCEEEEEE-ETTEEEEEETT-EEEEESEEEECSCE
T ss_pred             HHHHHHHHHHHhC-----CCEEEcCCEEEEEEE-eCCEEEEEECC-cEEEcCEEEECCCC
Confidence            4555555555433     469999999999987 55667777764 58999999999854

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=92.83  E-value=0.15  Score=42.24  Aligned_cols=40  Identities=10%  Similarity=0.071  Sum_probs=34.4

Q ss_pred             eEEcCCceEEEEecCC-CcEEEEeCCCcEEEcCEEEEecCh
Q psy13542         66 KLLLKKEVTKINWEDP-KGVVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        66 ~i~l~~~V~~I~~~~~-~~v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      .|+++++|++++++.+ +.++|++.+|++++||+||+|+-.
T Consensus       105 ~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~  145 (545)
T 3uox_A          105 HYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGP  145 (545)
T ss_dssp             GEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCS
T ss_pred             cEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCC
Confidence            7999999999998332 468999999999999999999974

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=92.82  E-value=0.19  Score=39.75  Aligned_cols=38  Identities=21%  Similarity=0.305  Sum_probs=32.2

Q ss_pred             ceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecCh
Q psy13542         65 KKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        65 ~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      .+++++++|++|+. .+.  +|++.+|+++.+|++|+|+-.
T Consensus        77 i~~~~~~~V~~id~-~~~--~v~~~~g~~~~yd~lvlAtG~  114 (385)
T 3klj_A           77 IKVITSEFATSIDP-NNK--LVTLKSGEKIKYEKLIIASGS  114 (385)
T ss_dssp             CEEECSCCEEEEET-TTT--EEEETTSCEEECSEEEECCCE
T ss_pred             CEEEeCCEEEEEEC-CCC--EEEECCCCEEECCEEEEecCC
Confidence            48999999999997 544  567788999999999999964

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=92.80  E-value=0.13  Score=41.25  Aligned_cols=57  Identities=5%  Similarity=-0.041  Sum_probs=40.0

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEE-EEe--C-CCc--EEEcCEEEEecChhH
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVV-VTC--A-DGT--QYSADRILITVSLGV  107 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~-v~~--~-~g~--~~~ad~VI~t~P~~~  107 (147)
                      ..+.+.|.+.+...     |.+|+++++|++|.. +++++. |++  . +|+  +++||.||.|.-...
T Consensus       100 ~~l~~~L~~~a~~~-----gv~i~~~~~v~~i~~-~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s  162 (453)
T 3atr_A          100 PLYNQRVLKEAQDR-----GVEIWDLTTAMKPIF-EDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSR  162 (453)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEESSEEEEEEEE-ETTEEEEEEEEETTTTEEEEEECSEEEECCGGGC
T ss_pred             HHHHHHHHHHHHHc-----CCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCceEEEEcCEEEECcCCch
Confidence            34556665555322     358999999999998 666653 443  3 675  799999999986543

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=92.68  E-value=0.13  Score=42.04  Aligned_cols=59  Identities=17%  Similarity=0.190  Sum_probs=39.9

Q ss_pred             CcHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEE-EEeC-CCc--EEEcC-EEEEecCh
Q psy13542         42 GGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVV-VTCA-DGT--QYSAD-RILITVSL  105 (147)
Q Consensus        42 gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~-v~~~-~g~--~~~ad-~VI~t~P~  105 (147)
                      +|...+.+.|.+.+...     |.+|+++++|++|..+++++|. |... +|+  ++.|| .||+|+--
T Consensus       199 ~g~~~l~~~L~~~~~~~-----Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG  262 (510)
T 4at0_A          199 GGGYMLMKPLVETAEKL-----GVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGS  262 (510)
T ss_dssp             CTTHHHHHHHHHHHHHT-----TCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCC
T ss_pred             CCHHHHHHHHHHHHHHc-----CCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCC
Confidence            34447788887776543     4699999999999983245442 3332 342  58995 99998853

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=92.57  E-value=0.15  Score=41.59  Aligned_cols=58  Identities=10%  Similarity=0.088  Sum_probs=43.4

Q ss_pred             HHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEe---CCCc--EEEcCEEEEecChhH
Q psy13542         44 YGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTC---ADGT--QYSADRILITVSLGV  107 (147)
Q Consensus        44 ~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~---~~g~--~~~ad~VI~t~P~~~  107 (147)
                      -..+...|++.+...     |.+++.+++|++|.. +++.+.|++   .+|+  +++||.||.|+-+..
T Consensus       148 ~~~l~~~l~~~a~~~-----Gv~i~~~~~V~~l~~-~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s  210 (501)
T 2qcu_A          148 DARLVLANAQMVVRK-----GGEVLTRTRATSARR-ENGLWIVEAEDIDTGKKYSWQARGLVNATGPWV  210 (501)
T ss_dssp             HHHHHHHHHHHHHHT-----TCEEECSEEEEEEEE-ETTEEEEEEEETTTCCEEEEEESCEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHc-----CCEEEcCcEEEEEEE-eCCEEEEEEEECCCCCEEEEECCEEEECCChhH
Confidence            356777777766543     469999999999998 555566666   3575  789999999997654

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=92.53  E-value=0.13  Score=38.95  Aligned_cols=54  Identities=17%  Similarity=0.228  Sum_probs=39.8

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecChh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLG  106 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~~  106 (147)
                      ..+.+.+.+.+...     |.++++++ |..|.. .++.++|++ +|+++.+|+||+|+-..
T Consensus        70 ~~~~~~l~~~~~~~-----gv~~~~~~-v~~i~~-~~~~~~v~~-~~~~~~~~~vv~A~G~~  123 (333)
T 1vdc_A           70 VELTDKFRKQSERF-----GTTIFTET-VTKVDF-SSKPFKLFT-DSKAILADAVILAIGAV  123 (333)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEECCC-CCEEEC-SSSSEEEEC-SSEEEEEEEEEECCCEE
T ss_pred             HHHHHHHHHHHHHC-----CCEEEEeE-EEEEEE-cCCEEEEEE-CCcEEEcCEEEECCCCC
Confidence            35555555544322     34889887 999998 677788888 77889999999998653

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=92.44  E-value=0.15  Score=41.56  Aligned_cols=56  Identities=13%  Similarity=0.130  Sum_probs=40.5

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCc---EEEEeCCCc--EEEcCEEEEecChh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKG---VVVTCADGT--QYSADRILITVSLG  106 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~---v~v~~~~g~--~~~ad~VI~t~P~~  106 (147)
                      ..+.+.|.+.+...     |.+|+++++|++|.. .+++   +++.+.+|+  +++||.||.|.-..
T Consensus       111 ~~l~~~L~~~a~~~-----Gv~i~~~~~V~~v~~-~~~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~  171 (512)
T 3e1t_A          111 ARFDDMLLRNSERK-----GVDVRERHEVIDVLF-EGERAVGVRYRNTEGVELMAHARFIVDASGNR  171 (512)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEESSCEEEEEEE-ETTEEEEEEEECSSSCEEEEEEEEEEECCCTT
T ss_pred             HHHHHHHHHHHHhC-----CCEEEcCCEEEEEEE-ECCEEEEEEEEeCCCCEEEEEcCEEEECCCcc
Confidence            34555565555322     458999999999998 6664   455566784  79999999998664

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=92.43  E-value=0.16  Score=41.13  Aligned_cols=42  Identities=14%  Similarity=0.132  Sum_probs=31.8

Q ss_pred             cceEEcCCceEEEEecCCCcEEEEeCCCc-----EEEcCEEEEecCh
Q psy13542         64 SKKLLLKKEVTKINWEDPKGVVVTCADGT-----QYSADRILITVSL  105 (147)
Q Consensus        64 g~~i~l~~~V~~I~~~~~~~v~v~~~~g~-----~~~ad~VI~t~P~  105 (147)
                      |.+++++++|.+|....++.+.|++.+++     ++.+|.||+++..
T Consensus       241 Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~  287 (483)
T 3dgh_A          241 GIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGR  287 (483)
T ss_dssp             TCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCE
T ss_pred             CCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECccc
Confidence            45899999999998733445777765543     7899999999843

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=92.43  E-value=0.1  Score=41.86  Aligned_cols=41  Identities=22%  Similarity=0.253  Sum_probs=32.5

Q ss_pred             cceEEcCCceEEEEecCCCcEEEEeC---CCcEEEcCEEEEecCh
Q psy13542         64 SKKLLLKKEVTKINWEDPKGVVVTCA---DGTQYSADRILITVSL  105 (147)
Q Consensus        64 g~~i~l~~~V~~I~~~~~~~v~v~~~---~g~~~~ad~VI~t~P~  105 (147)
                      |.++++++.|++|.. +++++.+++.   +++++.+|.||+++..
T Consensus       225 gv~i~~~~~v~~i~~-~~~~~~v~~~~~g~~~~~~~D~vv~a~G~  268 (455)
T 1ebd_A          225 GVEVVTNALAKGAEE-REDGVTVTYEANGETKTIDADYVLVTVGR  268 (455)
T ss_dssp             TCEEEESEEEEEEEE-ETTEEEEEEEETTEEEEEEESEEEECSCE
T ss_pred             CCEEEeCCEEEEEEE-eCCeEEEEEEeCCceeEEEcCEEEECcCC
Confidence            458999999999987 5556777654   4567999999999854

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=92.40  E-value=0.18  Score=36.72  Aligned_cols=54  Identities=13%  Similarity=0.169  Sum_probs=38.3

Q ss_pred             HHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcE-EEEeCCCcEEEcCEEEEecCh
Q psy13542         46 NVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGV-VVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        46 ~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v-~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      .+.+.|.+.+...   + |.+++ +++|++|.. +++++ .|.+.+|+++.||.||.|+-.
T Consensus        69 ~~~~~l~~~~~~~---~-gv~i~-~~~v~~i~~-~~~~v~~v~~~~g~~i~a~~VV~A~G~  123 (232)
T 2cul_A           69 AFHARAKYLLEGL---R-PLHLF-QATATGLLL-EGNRVVGVRTWEGPPARGEKVVLAVGS  123 (232)
T ss_dssp             HHHHHHHHHHHTC---T-TEEEE-ECCEEEEEE-ETTEEEEEEETTSCCEECSEEEECCTT
T ss_pred             HHHHHHHHHHHcC---C-CcEEE-EeEEEEEEE-eCCEEEEEEECCCCEEECCEEEECCCC
Confidence            4445555555321   0 24677 679999988 55664 577888888999999999876

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=92.27  E-value=0.17  Score=40.33  Aligned_cols=41  Identities=10%  Similarity=0.203  Sum_probs=33.5

Q ss_pred             cceEEcCCceEEEEecCCCcEEEEeC---CCcE--EEcCEEEEecCh
Q psy13542         64 SKKLLLKKEVTKINWEDPKGVVVTCA---DGTQ--YSADRILITVSL  105 (147)
Q Consensus        64 g~~i~l~~~V~~I~~~~~~~v~v~~~---~g~~--~~ad~VI~t~P~  105 (147)
                      |.++++++.|++|.. .++++.|++.   +|+.  +.+|.||+|+-.
T Consensus       330 ~v~i~~~~~v~~v~~-~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~  375 (463)
T 3s5w_A          330 RHAFRCMTTVERATA-TAQGIELALRDAGSGELSVETYDAVILATGY  375 (463)
T ss_dssp             CSEEETTEEEEEEEE-ETTEEEEEEEETTTCCEEEEEESEEEECCCE
T ss_pred             CeEEEeCCEEEEEEe-cCCEEEEEEEEcCCCCeEEEECCEEEEeeCC
Confidence            358999999999998 6677877765   6754  899999999843

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=92.13  E-value=0.15  Score=40.91  Aligned_cols=41  Identities=29%  Similarity=0.396  Sum_probs=32.2

Q ss_pred             cceEEcCCceEEEEecCCCcEEEEeC---CC--cEEEcCEEEEecCh
Q psy13542         64 SKKLLLKKEVTKINWEDPKGVVVTCA---DG--TQYSADRILITVSL  105 (147)
Q Consensus        64 g~~i~l~~~V~~I~~~~~~~v~v~~~---~g--~~~~ad~VI~t~P~  105 (147)
                      |.+++++++|++|.. +++++.|++.   +|  +++.+|.||+++..
T Consensus       232 gv~i~~~~~v~~i~~-~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~  277 (470)
T 1dxl_A          232 GMKFKLKTKVVGVDT-SGDGVKLTVEPSAGGEQTIIEADVVLVSAGR  277 (470)
T ss_dssp             SCCEECSEEEEEEEC-SSSSEEEEEEESSSCCCEEEEESEEECCCCE
T ss_pred             CCEEEeCCEEEEEEE-cCCeEEEEEEecCCCcceEEECCEEEECCCC
Confidence            458999999999987 5556766653   44  67999999999843

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=92.05  E-value=0.24  Score=41.51  Aligned_cols=58  Identities=22%  Similarity=0.297  Sum_probs=41.9

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeC-CC--cEEEcCEEEEecChhH
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCA-DG--TQYSADRILITVSLGV  107 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~-~g--~~~~ad~VI~t~P~~~  107 (147)
                      ..+.+.|.+.+...     |.+++.+++|++|..++++.+.|++. +|  ++++||.||.|.-...
T Consensus       128 ~~l~~~L~~~a~~~-----Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~AdlVV~AdG~~S  188 (591)
T 3i3l_A          128 EEFDKLLLDEARSR-----GITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFVIDAGGSGG  188 (591)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEESEEEECCGGGC
T ss_pred             HHHHHHHHHHHHhC-----CCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEcCEEEECCCCcc
Confidence            44555555555332     45899999999999733556778776 67  5799999999986543

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=92.05  E-value=0.32  Score=40.58  Aligned_cols=57  Identities=12%  Similarity=0.182  Sum_probs=41.2

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEE-EEeC------CC---------cEEEcCEEEEecChh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVV-VTCA------DG---------TQYSADRILITVSLG  106 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~-v~~~------~g---------~~~~ad~VI~t~P~~  106 (147)
                      ..+.+.|.+.+...     |.+|+++++|++|..++++.+. |++.      +|         .+++||.||.|.-..
T Consensus       144 ~~l~~~L~~~a~~~-----Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~  216 (584)
T 2gmh_A          144 GHLVSWMGEQAEAL-----GVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCH  216 (584)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTT
T ss_pred             HHHHHHHHHHHHHc-----CCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCC
Confidence            46677777666432     4589999999999983334554 7665      33         689999999998664

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=91.96  E-value=0.15  Score=40.19  Aligned_cols=51  Identities=16%  Similarity=0.119  Sum_probs=36.8

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecCh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      ..+.+.+.+.+...     |.+++++++|++|.. +  +  |++.+|+++.||.||++++.
T Consensus       218 ~~~~~~~~~~l~~~-----gV~~~~~~~v~~i~~-~--~--v~~~~g~~~~~D~vi~a~G~  268 (409)
T 3h8l_A          218 PNSRKAVASIYNQL-----GIKLVHNFKIKEIRE-H--E--IVDEKGNTIPADITILLPPY  268 (409)
T ss_dssp             HHHHHHHHHHHHHH-----TCEEECSCCEEEECS-S--E--EEETTSCEEECSEEEEECCE
T ss_pred             HHHHHHHHHHHHHC-----CCEEEcCCceEEECC-C--e--EEECCCCEEeeeEEEECCCC
Confidence            34445555544432     358999999999975 2  3  66788999999999999854

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=91.92  E-value=0.29  Score=38.73  Aligned_cols=36  Identities=31%  Similarity=0.434  Sum_probs=30.4

Q ss_pred             cceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecC
Q psy13542         64 SKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVS  104 (147)
Q Consensus        64 g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P  104 (147)
                      |.+++++++|++|.  + +  .|++.+|+++.||.||+++.
T Consensus       201 GV~i~~~~~v~~i~--~-~--~v~~~~g~~i~~D~vi~a~G  236 (408)
T 2gqw_A          201 GVDLRFERSVTGSV--D-G--VVLLDDGTRIAADMVVVGIG  236 (408)
T ss_dssp             TCEEEESCCEEEEE--T-T--EEEETTSCEEECSEEEECSC
T ss_pred             CcEEEeCCEEEEEE--C-C--EEEECCCCEEEcCEEEECcC
Confidence            45899999999998  2 2  56778898999999999985

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=91.79  E-value=0.35  Score=39.70  Aligned_cols=56  Identities=13%  Similarity=0.096  Sum_probs=42.2

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecC--CCcEEEEeCCCcEEEcCEEEEecCh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWED--PKGVVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~--~~~v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      ..+.+.+.+.+...     |.+++.+++|+.|....  ++.+.|++.+|+++.+|+||+|+-.
T Consensus       267 ~~l~~~l~~~~~~~-----gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~  324 (521)
T 1hyu_A          267 QKLAGALKAHVSDY-----DVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGA  324 (521)
T ss_dssp             HHHHHHHHHHHHTS-----CEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCE
T ss_pred             HHHHHHHHHHHHHc-----CCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCC
Confidence            45666666655432     45899999999998621  2368899989989999999999865

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=91.68  E-value=0.41  Score=38.89  Aligned_cols=39  Identities=21%  Similarity=0.059  Sum_probs=33.1

Q ss_pred             eEEcCCceEEEEecCCCcEEEEeC--CC--cEEEcCEEEEecCh
Q psy13542         66 KLLLKKEVTKINWEDPKGVVVTCA--DG--TQYSADRILITVSL  105 (147)
Q Consensus        66 ~i~l~~~V~~I~~~~~~~v~v~~~--~g--~~~~ad~VI~t~P~  105 (147)
                      +++++++|++|.. .++++.+++.  +|  +++.+|.||+++..
T Consensus       230 ~i~~~~~v~~i~~-~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~  272 (492)
T 3ic9_A          230 YFDAKARVISTIE-KEDAVEVIYFDKSGQKTTESFQYVLAATGR  272 (492)
T ss_dssp             EEETTCEEEEEEE-CSSSEEEEEECTTCCEEEEEESEEEECSCC
T ss_pred             EEEECCEEEEEEE-cCCEEEEEEEeCCCceEEEECCEEEEeeCC
Confidence            8999999999998 7778888764  67  67999999999854

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=91.65  E-value=0.25  Score=40.94  Aligned_cols=52  Identities=12%  Similarity=0.270  Sum_probs=37.7

Q ss_pred             HHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecCh
Q psy13542         46 NVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        46 ~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      .+.+.+.+.+...     |.+++++++|++|.. .+++  |++.+|+++.||.||+|+..
T Consensus       229 ~~~~~l~~~l~~~-----GV~i~~~~~v~~i~~-~~~~--v~~~~g~~i~~D~Vi~a~G~  280 (588)
T 3ics_A          229 EMAAYVHEHMKNH-----DVELVFEDGVDALEE-NGAV--VRLKSGSVIQTDMLILAIGV  280 (588)
T ss_dssp             HHHHHHHHHHHHT-----TCEEECSCCEEEEEG-GGTE--EEETTSCEEECSEEEECSCE
T ss_pred             HHHHHHHHHHHHc-----CCEEEECCeEEEEec-CCCE--EEECCCCEEEcCEEEEccCC
Confidence            3444444444332     458999999999987 4443  56678889999999999853

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=91.63  E-value=0.18  Score=40.84  Aligned_cols=41  Identities=27%  Similarity=0.263  Sum_probs=32.5

Q ss_pred             cceEEcCCceEEEEecCCCcEEEEeCC---C--cEEEcCEEEEecCh
Q psy13542         64 SKKLLLKKEVTKINWEDPKGVVVTCAD---G--TQYSADRILITVSL  105 (147)
Q Consensus        64 g~~i~l~~~V~~I~~~~~~~v~v~~~~---g--~~~~ad~VI~t~P~  105 (147)
                      |.+++++++|++|.. .++++.|+..+   |  +++.+|.||+++..
T Consensus       253 gV~v~~~~~v~~i~~-~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~  298 (491)
T 3urh_A          253 GIDFKLGAKVTGAVK-SGDGAKVTFEPVKGGEATTLDAEVVLIATGR  298 (491)
T ss_dssp             TCEEECSEEEEEEEE-ETTEEEEEEEETTSCCCEEEEESEEEECCCC
T ss_pred             CCEEEECCeEEEEEE-eCCEEEEEEEecCCCceEEEEcCEEEEeeCC
Confidence            458999999999998 66677666542   5  57999999999853

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=91.55  E-value=0.36  Score=39.81  Aligned_cols=41  Identities=20%  Similarity=0.251  Sum_probs=33.7

Q ss_pred             ceEEcCCceEEEEecCCCc--EEEEeCCCcEEEcCEEEEecChhH
Q psy13542         65 KKLLLKKEVTKINWEDPKG--VVVTCADGTQYSADRILITVSLGV  107 (147)
Q Consensus        65 ~~i~l~~~V~~I~~~~~~~--v~v~~~~g~~~~ad~VI~t~P~~~  107 (147)
                      .+++++ +|++|.. .+++  +.|++.+|+++.||.||.|.-...
T Consensus       210 v~i~~~-~V~~i~~-~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S  252 (550)
T 2e4g_A          210 VRHVED-RVEHVQR-DANGNIESVRTATGRVFDADLFVDCSGFRG  252 (550)
T ss_dssp             CEEEEC-CEEEEEE-CTTSCEEEEEETTSCEEECSEEEECCGGGC
T ss_pred             cEEEEC-eEeEEEE-cCCCCEEEEEECCCCEEECCEEEECCCCch
Confidence            489999 9999987 5444  678888898899999999987643

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=91.53  E-value=0.28  Score=36.88  Aligned_cols=54  Identities=13%  Similarity=0.256  Sum_probs=40.3

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEe---CCCcEEEcCEEEEecCh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTC---ADGTQYSADRILITVSL  105 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~---~~g~~~~ad~VI~t~P~  105 (147)
                      ..+.+.+.+.+...     |.++++++ |.+|.. .++.+.+++   .++.++.+|++|+|+-.
T Consensus        84 ~~~~~~~~~~~~~~-----gv~i~~~~-v~~i~~-~~~~~~v~~~~~~~~~~~~~d~vvlAtG~  140 (338)
T 3itj_A           84 SELMDRMREQSTKF-----GTEIITET-VSKVDL-SSKPFKLWTEFNEDAEPVTTDAIILATGA  140 (338)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEECSC-EEEEEC-SSSSEEEEETTCSSSCCEEEEEEEECCCE
T ss_pred             HHHHHHHHHHHHHc-----CCEEEEeE-EEEEEE-cCCEEEEEEEecCCCcEEEeCEEEECcCC
Confidence            45555555554322     34899998 999998 778898887   36778999999999865

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=91.49  E-value=0.26  Score=39.30  Aligned_cols=40  Identities=10%  Similarity=0.022  Sum_probs=31.3

Q ss_pred             eEEcCCceEEEEecC--CCc--EEEEeCCCc----EEEcCEEEEecCh
Q psy13542         66 KLLLKKEVTKINWED--PKG--VVVTCADGT----QYSADRILITVSL  105 (147)
Q Consensus        66 ~i~l~~~V~~I~~~~--~~~--v~v~~~~g~----~~~ad~VI~t~P~  105 (147)
                      .++++++|++|+...  ++.  ++|++.+|+    ++.||+||+|+-.
T Consensus       143 ~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~  190 (463)
T 3s5w_A          143 QSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGG  190 (463)
T ss_dssp             TEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCCC
T ss_pred             eEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCCC
Confidence            799999999998721  322  477777765    8999999999864

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=91.44  E-value=0.3  Score=40.02  Aligned_cols=56  Identities=14%  Similarity=0.182  Sum_probs=40.7

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCc--EEEEeCCCcEEEcCEEEEecChhH
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKG--VVVTCADGTQYSADRILITVSLGV  107 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~--v~v~~~~g~~~~ad~VI~t~P~~~  107 (147)
                      ..+.+.|.+.+...     |.+++.+ +|++|.. .+++  +.|++.+|++++||.||.|.-...
T Consensus       165 ~~l~~~L~~~a~~~-----gv~~~~~-~v~~i~~-~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s  222 (538)
T 2aqj_A          165 HLVADFLKRWAVER-----GVNRVVD-EVVDVRL-NNRGYISNLLTKEGRTLEADLFIDCSGMRG  222 (538)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEEEC-CEEEEEE-CTTSCEEEEEETTSCEECCSEEEECCGGGC
T ss_pred             HHHHHHHHHHHHHC-----CCEEEEe-eEeEEEE-cCCCcEEEEEECCCcEEEeCEEEECCCCch
Confidence            45555565555322     3589999 8999988 4443  578888898899999999987643

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=90.92  E-value=0.44  Score=38.30  Aligned_cols=53  Identities=11%  Similarity=0.206  Sum_probs=40.3

Q ss_pred             HHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCC-CcEEEEeC--CCc--EEEcCEEEEecCh
Q psy13542         44 YGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDP-KGVVVTCA--DGT--QYSADRILITVSL  105 (147)
Q Consensus        44 ~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~-~~v~v~~~--~g~--~~~ad~VI~t~P~  105 (147)
                      -..+.+.+.+.+. -       +++++++|++|.. .+ +++.|++.  +|+  ++.+|.||+++..
T Consensus       213 d~~~~~~l~~~l~-v-------~i~~~~~v~~i~~-~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~  270 (466)
T 3l8k_A          213 DQDIVNTLLSILK-L-------NIKFNSPVTEVKK-IKDDEYEVIYSTKDGSKKSIFTNSVVLAAGR  270 (466)
T ss_dssp             CHHHHHHHHHHHC-C-------CEECSCCEEEEEE-EETTEEEEEECCTTSCCEEEEESCEEECCCE
T ss_pred             CHHHHHHHHhcCE-E-------EEEECCEEEEEEE-cCCCcEEEEEEecCCceEEEEcCEEEECcCC
Confidence            3455666666554 2       7999999999988 55 77888877  676  7999999999853

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=90.85  E-value=0.44  Score=37.98  Aligned_cols=52  Identities=21%  Similarity=0.337  Sum_probs=37.2

Q ss_pred             HHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcE-EEEeCCCcEEEcCEEEEecCh
Q psy13542         46 NVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGV-VVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        46 ~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v-~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      .+.+.+.+.+...     |.+++++++|++|.. + +++ .|.+ +|+++.+|.||+++..
T Consensus       192 ~~~~~l~~~l~~~-----gv~i~~~~~v~~i~~-~-~~v~~v~~-~~~~i~~d~vi~a~G~  244 (447)
T 1nhp_A          192 EFTDVLTEEMEAN-----NITIATGETVERYEG-D-GRVQKVVT-DKNAYDADLVVVAVGV  244 (447)
T ss_dssp             HHHHHHHHHHHTT-----TEEEEESCCEEEEEC-S-SBCCEEEE-SSCEEECSEEEECSCE
T ss_pred             HHHHHHHHHHHhC-----CCEEEcCCEEEEEEc-c-CcEEEEEE-CCCEEECCEEEECcCC
Confidence            4455555555443     569999999999987 4 343 4555 4568999999999853

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=90.80  E-value=0.49  Score=38.35  Aligned_cols=51  Identities=20%  Similarity=0.384  Sum_probs=36.4

Q ss_pred             HHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcE-EEEeCCCcEEEcCEEEEecC
Q psy13542         46 NVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGV-VVTCADGTQYSADRILITVS  104 (147)
Q Consensus        46 ~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v-~v~~~~g~~~~ad~VI~t~P  104 (147)
                      .+.+.+.+.+...     |.++++++.|++|.. + +++ .|.+ +|+++.||.||+++.
T Consensus       237 ~~~~~l~~~l~~~-----GV~i~~~~~v~~i~~-~-~~v~~v~~-~g~~i~~D~Vi~a~G  288 (490)
T 2bc0_A          237 DLTDLMAKNMEEH-----GIQLAFGETVKEVAG-N-GKVEKIIT-DKNEYDVDMVILAVG  288 (490)
T ss_dssp             HHHHHHHHHHHTT-----TCEEEETCCEEEEEC-S-SSCCEEEE-SSCEEECSEEEECCC
T ss_pred             HHHHHHHHHHHhC-----CeEEEeCCEEEEEEc-C-CcEEEEEE-CCcEEECCEEEECCC
Confidence            3445555555433     469999999999986 4 333 3555 677899999999985

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=90.75  E-value=0.4  Score=39.03  Aligned_cols=56  Identities=13%  Similarity=0.134  Sum_probs=40.5

Q ss_pred             cCCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecCh
Q psy13542         40 KKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        40 ~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      +.+|.-.+-+.+.+ .        |.++++++.|++|.. +++...|.+.+|+++.||.||+++..
T Consensus       256 iGgG~~gle~~l~~-~--------GV~v~~~~~v~~i~~-~~~v~~v~~~~g~~i~aD~Vv~a~G~  311 (493)
T 1y56_A          256 TGSKADEVIQELER-W--------GIDYVHIPNVKRVEG-NEKVERVIDMNNHEYKVDALIFADGR  311 (493)
T ss_dssp             ESTTHHHHHHHHHH-H--------TCEEEECSSEEEEEC-SSSCCEEEETTCCEEECSEEEECCCE
T ss_pred             ECCCHHHHHHHHHh-C--------CcEEEeCCeeEEEec-CCceEEEEeCCCeEEEeCEEEECCCc
Confidence            45666555544432 2        348999999999986 54444567888989999999999853

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=90.57  E-value=0.3  Score=36.71  Aligned_cols=41  Identities=10%  Similarity=0.114  Sum_probs=30.6

Q ss_pred             cceEEcCCceEEEEecCCCcEE-EEeCC-----CcEEEcCEEEEecCh
Q psy13542         64 SKKLLLKKEVTKINWEDPKGVV-VTCAD-----GTQYSADRILITVSL  105 (147)
Q Consensus        64 g~~i~l~~~V~~I~~~~~~~v~-v~~~~-----g~~~~ad~VI~t~P~  105 (147)
                      |.+++++++|.+|.. +++++. |++.+     ++++.+|.||+++..
T Consensus       223 gv~i~~~~~v~~i~~-~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~  269 (338)
T 3itj_A          223 KIEILYNTVALEAKG-DGKLLNALRIKNTKKNEETDLPVSGLFYAIGH  269 (338)
T ss_dssp             TEEEECSEEEEEEEE-SSSSEEEEEEEETTTTEEEEEECSEEEECSCE
T ss_pred             CeEEeecceeEEEEc-ccCcEEEEEEEECCCCceEEEEeCEEEEEeCC
Confidence            358999999999998 555432 54433     357899999999854

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=90.46  E-value=0.18  Score=41.94  Aligned_cols=57  Identities=16%  Similarity=0.105  Sum_probs=42.0

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcE-EEEeC---CC--cEEEcCEEEEecChhH
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGV-VVTCA---DG--TQYSADRILITVSLGV  107 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v-~v~~~---~g--~~~~ad~VI~t~P~~~  107 (147)
                      ..+..+|++.+...     |.+|+.+++|++|.. +++++ .|++.   +|  .+++||.||.|+-+..
T Consensus       170 ~~l~~~L~~~a~~~-----G~~i~~~~~V~~l~~-~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s  232 (561)
T 3da1_A          170 ARLTLEIMKEAVAR-----GAVALNYMKVESFIY-DQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV  232 (561)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEEESEEEEEEEE-ETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHc-----CCEEEcCCEEEEEEE-cCCeEEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence            66777777766443     569999999999998 66653 35543   24  4789999999997754

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=90.41  E-value=0.39  Score=38.65  Aligned_cols=41  Identities=17%  Similarity=0.121  Sum_probs=32.0

Q ss_pred             cceEEcCCceEEEEecCCCc--EEEEeCC---C----cEEEcCEEEEecCh
Q psy13542         64 SKKLLLKKEVTKINWEDPKG--VVVTCAD---G----TQYSADRILITVSL  105 (147)
Q Consensus        64 g~~i~l~~~V~~I~~~~~~~--v~v~~~~---g----~~~~ad~VI~t~P~  105 (147)
                      |.++++++.|++|.. .+++  +.|.+.+   |    +++.+|.||+++..
T Consensus       242 gv~i~~~~~v~~i~~-~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~  291 (478)
T 3dk9_A          242 GVEVLKFSQVKEVKK-TLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGR  291 (478)
T ss_dssp             TCEEETTEEEEEEEE-CSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCE
T ss_pred             CCEEEeCCEEEEEEE-cCCCcEEEEEEccCCCCcccceEEEcCEEEEeecc
Confidence            458999999999987 5444  6677664   2    57899999999853

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=90.32  E-value=0.81  Score=34.26  Aligned_cols=40  Identities=23%  Similarity=0.313  Sum_probs=30.9

Q ss_pred             eEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecCh
Q psy13542         66 KLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        66 ~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      ...++..+..+....++.++|.+.+|+++.+|++|+|+-.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs  115 (304)
T 4fk1_A           76 VHYYEKTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGM  115 (304)
T ss_dssp             EEEEECCEEEEEECTTSCEEEEETTCCEEEEEEEEECCCC
T ss_pred             EEEEeeEEEEeeecCCCcEEEEECCCCEEEeCEEEEccCC
Confidence            4455566777766355668899999999999999999964

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=90.25  E-value=0.43  Score=38.98  Aligned_cols=52  Identities=10%  Similarity=0.149  Sum_probs=37.5

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCC-------CcEEEEeCCC-----cEEEcCEEEEecC
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDP-------KGVVVTCADG-----TQYSADRILITVS  104 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~-------~~v~v~~~~g-----~~~~ad~VI~t~P  104 (147)
                      ..-.+..++++..        .|++++.|++|.+...       +.++|++.++     +++.|++||+++.
T Consensus       148 ~~Yl~~~A~~~~~--------~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG  211 (501)
T 4b63_A          148 EDYMRWCAQQFSD--------VVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIG  211 (501)
T ss_dssp             HHHHHHHHHTTGG--------GEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCC
T ss_pred             HHHHHHHHHHcCC--------ceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcC
Confidence            3444555666642        7999999999987332       2478887544     3689999999998

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=90.25  E-value=0.42  Score=36.52  Aligned_cols=39  Identities=8%  Similarity=0.204  Sum_probs=31.9

Q ss_pred             ceEEcCCceEEEEecCCCcEEEEeCCCcEEE-cCEEEEecC
Q psy13542         65 KKLLLKKEVTKINWEDPKGVVVTCADGTQYS-ADRILITVS  104 (147)
Q Consensus        65 ~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~-ad~VI~t~P  104 (147)
                      .++++++.|.+|.. .++.+.|++.+|+++. +|.||+++.
T Consensus       230 v~~~~~~~v~~i~~-~~~~~~v~~~~g~~~~~~d~vi~a~G  269 (369)
T 3d1c_A          230 IEMNVHYTVKDIDF-NNGQYHISFDSGQSVHTPHEPILATG  269 (369)
T ss_dssp             EEEECSCCEEEEEE-ETTEEEEEESSSCCEEESSCCEECCC
T ss_pred             EEEecCcEEEEEEe-cCCceEEEecCCeEeccCCceEEeec
Confidence            58999999999986 5567788888887665 599999884

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=90.07  E-value=0.2  Score=40.48  Aligned_cols=39  Identities=13%  Similarity=0.196  Sum_probs=30.9

Q ss_pred             eEEcCCceEEEEecCCC--cEEEEeCC---C--cEEEcCEEEEecCh
Q psy13542         66 KLLLKKEVTKINWEDPK--GVVVTCAD---G--TQYSADRILITVSL  105 (147)
Q Consensus        66 ~i~l~~~V~~I~~~~~~--~v~v~~~~---g--~~~~ad~VI~t~P~  105 (147)
                      .|++++.|++|.. .++  +++|++.+   |  .++.||+||+|+-.
T Consensus       119 ~i~~~~~V~~v~~-~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAtG~  164 (464)
T 2xve_A          119 YIRFNTAVRHVEF-NEDSQTFTVTVQDHTTDTIYSEEFDYVVCCTGH  164 (464)
T ss_dssp             GEECSEEEEEEEE-ETTTTEEEEEEEETTTTEEEEEEESEEEECCCS
T ss_pred             eEEeCCEEEEEEE-cCCCCcEEEEEEEcCCCceEEEEcCEEEECCCC
Confidence            3999999999998 444  67777654   4  57899999999974

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=90.02  E-value=0.45  Score=35.57  Aligned_cols=53  Identities=9%  Similarity=0.302  Sum_probs=37.7

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecCh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      ..+.+.+.+.+...     |.++++++ |+.|.. .++.+.| +.+|+++.+|++|+|+-.
T Consensus        62 ~~~~~~~~~~~~~~-----~~~~~~~~-v~~i~~-~~~~~~v-~~~~~~~~~~~lv~AtG~  114 (320)
T 1trb_A           62 PLLMERMHEHATKF-----ETEIIFDH-INKVDL-QNRPFRL-NGDNGEYTCDALIIATGA  114 (320)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEECCC-EEEEEC-SSSSEEE-EESSCEEEEEEEEECCCE
T ss_pred             HHHHHHHHHHHHHC-----CCEEEEee-eeEEEe-cCCEEEE-EeCCCEEEcCEEEECCCC
Confidence            34555554444321     24788886 999988 7777887 667789999999999864

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=89.87  E-value=0.44  Score=37.41  Aligned_cols=39  Identities=21%  Similarity=0.181  Sum_probs=32.1

Q ss_pred             eEEcCCceEEEEecCCCcEEEEeCC---C--cEEEcCEEEEecChh
Q psy13542         66 KLLLKKEVTKINWEDPKGVVVTCAD---G--TQYSADRILITVSLG  106 (147)
Q Consensus        66 ~i~l~~~V~~I~~~~~~~v~v~~~~---g--~~~~ad~VI~t~P~~  106 (147)
                      +|+++++|++|..  +++++|++.+   |  ++++||.||.|.-..
T Consensus       125 ~v~~~~~v~~i~~--~~~v~v~~~~~~~g~~~~~~ad~vV~AdG~~  168 (410)
T 3c96_A          125 AVRTGLGVERIEE--RDGRVLIGARDGHGKPQALGADVLVGADGIH  168 (410)
T ss_dssp             SEEESEEEEEEEE--ETTEEEEEEEETTSCEEEEEESEEEECCCTT
T ss_pred             EEEECCEEEEEec--CCccEEEEecCCCCCceEEecCEEEECCCcc
Confidence            6999999999987  4568887654   7  579999999998664

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=89.73  E-value=0.75  Score=34.62  Aligned_cols=55  Identities=18%  Similarity=0.146  Sum_probs=37.8

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeC---CC--cEEEcCEEEEecCh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCA---DG--TQYSADRILITVSL  105 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~---~g--~~~~ad~VI~t~P~  105 (147)
                      ..+.+.+.+.+...     |.++++++.|.+|.. +++...|++.   +|  +++.+|.||+++..
T Consensus       191 ~~~~~~l~~~l~~~-----gv~v~~~~~v~~i~~-~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~  250 (335)
T 2zbw_A          191 EASVKELMKAHEEG-----RLEVLTPYELRRVEG-DERVRWAVVFHNQTQEELALEVDAVLILAGY  250 (335)
T ss_dssp             HHHHHHHHHHHHTT-----SSEEETTEEEEEEEE-SSSEEEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred             HHHHHHHHhccccC-----CeEEecCCcceeEcc-CCCeeEEEEEECCCCceEEEecCEEEEeecC
Confidence            44556666655433     458999999999987 5442234443   66  57899999999853

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=89.64  E-value=0.36  Score=39.82  Aligned_cols=53  Identities=15%  Similarity=0.130  Sum_probs=41.0

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCC---C--cEEEcCEEEEecChh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCAD---G--TQYSADRILITVSLG  106 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~---g--~~~~ad~VI~t~P~~  106 (147)
                      ..+-+.|.+.+..        .|+++++|++|.. ++++|+|++.+   |  ++++||+||.|.-..
T Consensus       138 ~~l~~~L~~~a~~--------~v~~~~~v~~~~~-~~~~v~v~~~~~~~G~~~~i~a~~vVgADG~~  195 (549)
T 2r0c_A          138 HWLAPLLAEAVGE--------RLRTRSRLDSFEQ-RDDHVRATITDLRTGATRAVHARYLVACDGAS  195 (549)
T ss_dssp             HHHHHHHHHHHGG--------GEECSEEEEEEEE-CSSCEEEEEEETTTCCEEEEEEEEEEECCCTT
T ss_pred             HHHHHHHHHHHHH--------hcccCcEEEEEEE-eCCEEEEEEEECCCCCEEEEEeCEEEECCCCC
Confidence            3566677777753        2999999999998 77788887654   6  479999999997654

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=89.54  E-value=0.67  Score=39.47  Aligned_cols=56  Identities=18%  Similarity=0.157  Sum_probs=40.0

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcE-EEEeCCCcEEEcCEEEEecChh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGV-VVTCADGTQYSADRILITVSLG  106 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v-~v~~~~g~~~~ad~VI~t~P~~  106 (147)
                      ..+.+.|.+.+....    |.+| +++.|+.|.. +++++ .|.+.+|+++.||.||+|+-..
T Consensus       123 ~~~~~~L~~~Le~~~----GVeI-~~~~Vt~L~~-e~g~V~GV~t~dG~~i~AdaVVLATG~~  179 (637)
T 2zxi_A          123 KRYREYMKKVCENQE----NLYI-KQEEVVDIIV-KNNQVVGVRTNLGVEYKTKAVVVTTGTF  179 (637)
T ss_dssp             HHHHHHHHHHHHTCT----TEEE-EESCEEEEEE-SSSBEEEEEETTSCEEECSEEEECCTTC
T ss_pred             HHHHHHHHHHHHhCC----CCEE-EEeEEEEEEe-cCCEEEEEEECCCcEEEeCEEEEccCCC
Confidence            345555655554210    2467 6789999988 66665 5888899899999999999753

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=89.53  E-value=0.36  Score=38.84  Aligned_cols=41  Identities=17%  Similarity=0.247  Sum_probs=30.8

Q ss_pred             cceEEcCCceEEEEec-CCCcEEEEeC-----CCcEEEcCEEEEecC
Q psy13542         64 SKKLLLKKEVTKINWE-DPKGVVVTCA-----DGTQYSADRILITVS  104 (147)
Q Consensus        64 g~~i~l~~~V~~I~~~-~~~~v~v~~~-----~g~~~~ad~VI~t~P  104 (147)
                      |.+++++++|++|... +++.+.|++.     +++++.+|.||+++.
T Consensus       238 gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G  284 (478)
T 1v59_A          238 GLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVG  284 (478)
T ss_dssp             TCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSC
T ss_pred             CCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCC
Confidence            4589999999999862 2344666654     456799999999984

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=89.34  E-value=0.59  Score=38.19  Aligned_cols=54  Identities=11%  Similarity=0.092  Sum_probs=38.2

Q ss_pred             HHHHHHHhhCCC-CCCCCCcceEEcCCceEEEEecCCCc--EEEEeCCCcEEEcCEEEEecChh
Q psy13542         46 NVFKLLMKQMPG-QTPIDLSKKLLLKKEVTKINWEDPKG--VVVTCADGTQYSADRILITVSLG  106 (147)
Q Consensus        46 ~l~~~l~~~l~~-~~~~~~g~~i~l~~~V~~I~~~~~~~--v~v~~~~g~~~~ad~VI~t~P~~  106 (147)
                      .+.+.|.+.+.. .     |.+++.+ .|++|.. ++++  +.|++.+|.+++||.||.|.-..
T Consensus       176 ~l~~~L~~~a~~~~-----Gv~i~~~-~v~~i~~-~~~g~~~~v~~~~g~~i~ad~vV~AdG~~  232 (526)
T 2pyx_A          176 KFSQLLTEHCTQKL-----GVTHIRD-HVSQIIN-NQHGDIEKLITKQNGEISGQLFIDCTGAK  232 (526)
T ss_dssp             HHHHHHHHHHHHTS-----CCEEEEC-CEEEEEE-CTTSCEEEEEESSSCEEECSEEEECSGGG
T ss_pred             HHHHHHHHHHHhcC-----CCEEEEe-EEEEEEe-cCCCcEEEEEECCCCEEEcCEEEECCCcc
Confidence            445555544432 2     3589999 5999988 5443  46778887789999999998764

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=89.23  E-value=0.57  Score=34.81  Aligned_cols=40  Identities=18%  Similarity=0.311  Sum_probs=30.2

Q ss_pred             cceEEcCCceEEEEecCCCcEEEEeCC---Cc--EEEcCEEEEecC
Q psy13542         64 SKKLLLKKEVTKINWEDPKGVVVTCAD---GT--QYSADRILITVS  104 (147)
Q Consensus        64 g~~i~l~~~V~~I~~~~~~~v~v~~~~---g~--~~~ad~VI~t~P  104 (147)
                      |.+++++++|++|.. +++...|++.+   |+  ++.+|.||+++.
T Consensus       204 gv~~~~~~~v~~i~~-~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G  248 (323)
T 3f8d_A          204 NVEFVLNSVVKEIKG-DKVVKQVVVENLKTGEIKELNVNGVFIEIG  248 (323)
T ss_dssp             TEEEECSEEEEEEEE-SSSEEEEEEEETTTCCEEEEECSEEEECCC
T ss_pred             CcEEEeCCEEEEEec-cCceeEEEEEECCCCceEEEEcCEEEEEEC
Confidence            458999999999987 54433455543   75  789999999874

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=88.92  E-value=0.52  Score=35.47  Aligned_cols=54  Identities=13%  Similarity=0.179  Sum_probs=37.5

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecC--CCc-EEEEeCCCcEEEcCEEEEecCh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWED--PKG-VVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~--~~~-v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      ..+.+.+.+.+...     |.+++. ..|.+|.. .  ++. +.|.+.+|+++.+|+||+|+-.
T Consensus        65 ~~~~~~l~~~~~~~-----gv~~~~-~~v~~i~~-~~~~~~~~~v~~~~g~~~~~~~vv~AtG~  121 (325)
T 2q7v_A           65 MELAQRMHQQAEKF-----GAKVEM-DEVQGVQH-DATSHPYPFTVRGYNGEYRAKAVILATGA  121 (325)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEEE-CCEEEEEE-CTTSSSCCEEEEESSCEEEEEEEEECCCE
T ss_pred             HHHHHHHHHHHHHc-----CCEEEe-eeEEEEEe-ccCCCceEEEEECCCCEEEeCEEEECcCC
Confidence            34555554444321     236777 68999988 5  443 7777778889999999999865

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=88.78  E-value=0.83  Score=34.24  Aligned_cols=53  Identities=21%  Similarity=0.229  Sum_probs=38.4

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecCh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      ..+.+.+.+.+...     |.++++ .+|+.|.. .++.+.|.+ ++.++.+|++|+|+-.
T Consensus        72 ~~~~~~~~~~~~~~-----~v~~~~-~~v~~i~~-~~~~~~v~~-~~~~~~~~~li~AtG~  124 (319)
T 3cty_A           72 SELAKLFADHAANY-----AKIREG-VEVRSIKK-TQGGFDIET-NDDTYHAKYVIITTGT  124 (319)
T ss_dssp             HHHHHHHHHHHHTT-----SEEEET-CCEEEEEE-ETTEEEEEE-SSSEEEEEEEEECCCE
T ss_pred             HHHHHHHHHHHHHc-----CCEEEE-eeEEEEEE-eCCEEEEEE-CCCEEEeCEEEECCCC
Confidence            45566665555432     347777 78999988 666777877 5668999999999864

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=88.70  E-value=0.24  Score=40.45  Aligned_cols=58  Identities=12%  Similarity=0.038  Sum_probs=40.1

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEec--CCCcEEEEe--C-CC--cEEEcCEEEEecChhH
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWE--DPKGVVVTC--A-DG--TQYSADRILITVSLGV  107 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~--~~~~v~v~~--~-~g--~~~~ad~VI~t~P~~~  107 (147)
                      ..+.+.|.+.+...     |.+|+++++|++|..+  +++.+.|++  . +|  ++++||.||.|+-...
T Consensus       166 ~~l~~~L~~~~~~~-----gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S  230 (497)
T 2bry_A          166 RQLQLLLLKVALLL-----GVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKF  230 (497)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTC
T ss_pred             HHHHHHHHHHHHhC-----CCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCc
Confidence            45555665555322     3589999999999872  134567766  4 66  5799999999986543

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=88.42  E-value=0.69  Score=39.49  Aligned_cols=54  Identities=11%  Similarity=0.133  Sum_probs=39.2

Q ss_pred             HHHHHHHhhCCC-CCCCCCcceEEcCCceEEEEecCCCcE-EEEeCCCcEEEcCEEEEecChh
Q psy13542         46 NVFKLLMKQMPG-QTPIDLSKKLLLKKEVTKINWEDPKGV-VVTCADGTQYSADRILITVSLG  106 (147)
Q Consensus        46 ~l~~~l~~~l~~-~~~~~~g~~i~l~~~V~~I~~~~~~~v-~v~~~~g~~~~ad~VI~t~P~~  106 (147)
                      .+.+.|.+.+.. .     |.++ +++.|+.|.. +++++ .|.+.+|.++.||.||+|+-..
T Consensus       125 ~~~~~L~e~Le~~~-----GV~I-~~~~V~~L~~-e~g~V~GV~t~dG~~I~Ad~VVLATGt~  180 (651)
T 3ces_A          125 LYRQAVRTALENQP-----NLMI-FQQAVEDLIV-ENDRVVGAVTQMGLKFRAKAVVLTVGTF  180 (651)
T ss_dssp             HHHHHHHHHHHTCT-----TEEE-EECCEEEEEE-SSSBEEEEEETTSEEEEEEEEEECCSTT
T ss_pred             HHHHHHHHHHHhCC-----CCEE-EEEEEEEEEe-cCCEEEEEEECCCCEEECCEEEEcCCCC
Confidence            455555555532 1     3477 6789999987 66665 6888889889999999999764

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=88.40  E-value=0.58  Score=37.81  Aligned_cols=55  Identities=18%  Similarity=0.209  Sum_probs=36.7

Q ss_pred             HHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCC---Cc--EEEcCEEEEecCh
Q psy13542         46 NVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCAD---GT--QYSADRILITVSL  105 (147)
Q Consensus        46 ~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~---g~--~~~ad~VI~t~P~  105 (147)
                      .+.+.+.+.+...     |.++++++.|++|....++.+.|++.+   |+  ++.+|.||+++..
T Consensus       226 ~~~~~l~~~l~~~-----gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~  285 (488)
T 3dgz_A          226 QMSSLVTEHMESH-----GTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGR  285 (488)
T ss_dssp             HHHHHHHHHHHHT-----TCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCE
T ss_pred             HHHHHHHHHHHHC-----CCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccC
Confidence            3444455544433     458999999999987334456666543   54  4789999999853

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=88.29  E-value=0.6  Score=35.39  Aligned_cols=53  Identities=13%  Similarity=0.191  Sum_probs=37.3

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEE-EeCCCcEEEcCEEEEecCh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVV-TCADGTQYSADRILITVSL  105 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v-~~~~g~~~~ad~VI~t~P~  105 (147)
                      ..+.+.+.+.+...     |.++++++ |.+|..  ++.++| .+.+|+++.+|++|+|+-.
T Consensus        71 ~~~~~~l~~~~~~~-----~v~~~~~~-v~~i~~--~~~~~v~~~~~g~~~~~d~lviAtG~  124 (335)
T 2a87_A           71 PELMDEMREQALRF-----GADLRMED-VESVSL--HGPLKSVVTADGQTHRARAVILAMGA  124 (335)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEECCC-EEEEEC--SSSSEEEEETTSCEEEEEEEEECCCE
T ss_pred             HHHHHHHHHHHHHc-----CCEEEEee-EEEEEe--CCcEEEEEeCCCCEEEeCEEEECCCC
Confidence            44555554444321     24789887 999986  345677 7788889999999999865

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=88.05  E-value=0.84  Score=36.84  Aligned_cols=52  Identities=19%  Similarity=0.344  Sum_probs=35.5

Q ss_pred             HHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcE-EEEeCCCcEEEcCEEEEecCh
Q psy13542         46 NVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGV-VVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        46 ~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v-~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      .+.+.+.+.+...     |.+++++++|++|.. + +++ .+.+. +.++.||.||+|+..
T Consensus       228 ~~~~~l~~~l~~~-----Gv~i~~~~~v~~i~~-~-~~v~~v~~~-~~~i~~D~vi~a~G~  280 (480)
T 3cgb_A          228 DMAEYIYKEADKH-----HIEILTNENVKAFKG-N-ERVEAVETD-KGTYKADLVLVSVGV  280 (480)
T ss_dssp             HHHHHHHHHHHHT-----TCEEECSCCEEEEEE-S-SBEEEEEET-TEEEECSEEEECSCE
T ss_pred             HHHHHHHHHHHHc-----CcEEEcCCEEEEEEc-C-CcEEEEEEC-CCEEEcCEEEECcCC
Confidence            3444444444332     458999999999987 5 344 45554 448999999999853

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=87.66  E-value=0.49  Score=35.39  Aligned_cols=41  Identities=7%  Similarity=0.046  Sum_probs=30.2

Q ss_pred             cceEEcCCceEEEEecCCCcEEEEeCC-----CcEEEcCEEEEecCh
Q psy13542         64 SKKLLLKKEVTKINWEDPKGVVVTCAD-----GTQYSADRILITVSL  105 (147)
Q Consensus        64 g~~i~l~~~V~~I~~~~~~~v~v~~~~-----g~~~~ad~VI~t~P~  105 (147)
                      |.+++++++|.+|.. +++...|++.+     ++++.+|.||++++.
T Consensus       203 gv~~~~~~~v~~i~~-~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~  248 (332)
T 3lzw_A          203 KVNVLTPFVPAELIG-EDKIEQLVLEEVKGDRKEILEIDDLIVNYGF  248 (332)
T ss_dssp             SCEEETTEEEEEEEC-SSSCCEEEEEETTSCCEEEEECSEEEECCCE
T ss_pred             CeEEEeCceeeEEec-CCceEEEEEEecCCCceEEEECCEEEEeecc
Confidence            358999999999987 54444454433     357899999999853

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=87.56  E-value=0.7  Score=34.22  Aligned_cols=41  Identities=27%  Similarity=0.355  Sum_probs=31.2

Q ss_pred             cceEEcCCceEEEEecCCCc---EEEEeCCCc--EEEcCEEEEecCh
Q psy13542         64 SKKLLLKKEVTKINWEDPKG---VVVTCADGT--QYSADRILITVSL  105 (147)
Q Consensus        64 g~~i~l~~~V~~I~~~~~~~---v~v~~~~g~--~~~ad~VI~t~P~  105 (147)
                      |.+++++++|.+|.. ++++   +.+...+|+  ++.+|.||+++..
T Consensus       197 gv~~~~~~~v~~i~~-~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~  242 (315)
T 3r9u_A          197 KIELITSASVDEVYG-DKMGVAGVKVKLKDGSIRDLNVPGIFTFVGL  242 (315)
T ss_dssp             TEEEECSCEEEEEEE-ETTEEEEEEEECTTSCEEEECCSCEEECSCE
T ss_pred             CeEEEeCcEEEEEEc-CCCcEEEEEEEcCCCCeEEeecCeEEEEEcC
Confidence            468999999999987 5433   444444775  7899999999854

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=87.54  E-value=0.88  Score=34.77  Aligned_cols=39  Identities=31%  Similarity=0.385  Sum_probs=29.9

Q ss_pred             ceEEcCCceEEEEecCCCc---EEEEeCCC--cEEEcCEEEEecC
Q psy13542         65 KKLLLKKEVTKINWEDPKG---VVVTCADG--TQYSADRILITVS  104 (147)
Q Consensus        65 ~~i~l~~~V~~I~~~~~~~---v~v~~~~g--~~~~ad~VI~t~P  104 (147)
                      .+++++++|++|.. ++++   +.+...+|  +++.+|.||+++.
T Consensus       217 v~i~~~~~v~~i~~-~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G  260 (360)
T 3ab1_A          217 IDVYLETEVASIEE-SNGVLTRVHLRSSDGSKWTVEADRLLILIG  260 (360)
T ss_dssp             EEEESSEEEEEEEE-ETTEEEEEEEEETTCCEEEEECSEEEECCC
T ss_pred             eEEEcCcCHHHhcc-CCCceEEEEEEecCCCeEEEeCCEEEECCC
Confidence            58999999999987 5454   33433477  5789999999985

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=87.29  E-value=1  Score=35.76  Aligned_cols=38  Identities=32%  Similarity=0.389  Sum_probs=31.3

Q ss_pred             ceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecCh
Q psy13542         65 KKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        65 ~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      .+++++++|+.|+. .+.  .|++.+|+++.+|++|+|+-.
T Consensus        75 v~~~~~~~v~~i~~-~~~--~v~~~~g~~~~~d~lviAtG~  112 (431)
T 1q1r_A           75 IQLLGGTQVTAINR-DRQ--QVILSDGRALDYDRLVLATGG  112 (431)
T ss_dssp             EEEECSCCEEEEET-TTT--EEEETTSCEEECSEEEECCCE
T ss_pred             CEEEeCCEEEEEEC-CCC--EEEECCCCEEECCEEEEcCCC
Confidence            48999999999987 544  466678889999999999854

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=87.19  E-value=0.83  Score=34.19  Aligned_cols=54  Identities=11%  Similarity=0.063  Sum_probs=37.0

Q ss_pred             HHHHHHHHhhCCC-CCCCCCcceEEcCCceEEEEecCCCcE-EEEeC---------CC-----cEEEcCEEEEecC
Q psy13542         45 GNVFKLLMKQMPG-QTPIDLSKKLLLKKEVTKINWEDPKGV-VVTCA---------DG-----TQYSADRILITVS  104 (147)
Q Consensus        45 ~~l~~~l~~~l~~-~~~~~~g~~i~l~~~V~~I~~~~~~~v-~v~~~---------~g-----~~~~ad~VI~t~P  104 (147)
                      ..+.+.|.+.+.. .     |.+++++++|++|.. +++++ .|.+.         +|     .++.||.||+|+-
T Consensus       119 ~~~~~~l~~~~~~~~-----gv~i~~~~~V~~i~~-~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG  188 (284)
T 1rp0_A          119 ALFTSTIMSKLLARP-----NVKLFNAVAAEDLIV-KGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCG  188 (284)
T ss_dssp             HHHHHHHHHHHHTST-----TEEEEETEEEEEEEE-ETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCC
T ss_pred             HHHHHHHHHHHHhcC-----CCEEEcCcEEEEEEe-cCCeEEEEEEeccccccccCccccCceEEEECCEEEECCC
Confidence            4566666665532 2     468999999999987 55544 23321         32     5799999999986

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=86.94  E-value=1.2  Score=37.66  Aligned_cols=55  Identities=13%  Similarity=0.224  Sum_probs=40.6

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcE---EEEe-CCCc--EEEcCEEEEecCh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGV---VVTC-ADGT--QYSADRILITVSL  105 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v---~v~~-~~g~--~~~ad~VI~t~P~  105 (147)
                      ..+.+.|.+.+...     |.+|+.+++|.++.. +++++   .+.. .+|+  .+.||.||+|+--
T Consensus       155 ~~l~~~L~~~~~~~-----gv~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG  215 (621)
T 2h88_A          155 HSLLHTLYGRSLRY-----DTSYFVEYFALDLLM-ENGECRGVIALCIEDGTIHRFRAKNTVIATGG  215 (621)
T ss_dssp             HHHHHHHHHHHTTS-----CCEEEETEEEEEEEE-ETTEEEEEEEEETTTCCEEEEEEEEEEECCCC
T ss_pred             HHHHHHHHHHHHhC-----CCEEEEceEEEEEEE-ECCEEEEEEEEEcCCCcEEEEEcCeEEECCCc
Confidence            46888888887643     469999999999987 55543   3333 4675  6899999999854

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=86.77  E-value=1  Score=33.44  Aligned_cols=41  Identities=20%  Similarity=0.233  Sum_probs=30.2

Q ss_pred             cceEEcCCceEEEEecCCCcE-EEEeC---CCc--EEEcCEEEEecCh
Q psy13542         64 SKKLLLKKEVTKINWEDPKGV-VVTCA---DGT--QYSADRILITVSL  105 (147)
Q Consensus        64 g~~i~l~~~V~~I~~~~~~~v-~v~~~---~g~--~~~ad~VI~t~P~  105 (147)
                      |.+++++++|.+|.. +++++ .|.+.   +|+  ++.+|.||+++..
T Consensus       193 gv~v~~~~~v~~i~~-~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~  239 (311)
T 2q0l_A          193 KIEFLTPYVVEEIKG-DASGVSSLSIKNTATNEKRELVVPGFFIFVGY  239 (311)
T ss_dssp             TEEEETTEEEEEEEE-ETTEEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred             CeEEEeCCEEEEEEC-CCCcEeEEEEEecCCCceEEEecCEEEEEecC
Confidence            458999999999987 54443 34433   665  6899999999853

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=86.57  E-value=0.53  Score=39.15  Aligned_cols=57  Identities=12%  Similarity=0.084  Sum_probs=39.7

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcE-EEEeC---CCc--EEEcCEEEEecChhH
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGV-VVTCA---DGT--QYSADRILITVSLGV  107 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v-~v~~~---~g~--~~~ad~VI~t~P~~~  107 (147)
                      ..+...+++.+...     |.+|+.+++|++|.. +++++ .|+..   +|+  ++.||.||.|+-+..
T Consensus       188 ~~l~~~l~~~a~~~-----Ga~i~~~t~V~~l~~-~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws  250 (571)
T 2rgh_A          188 ARLVIDNIKKAAED-----GAYLVSKMKAVGFLY-EGDQIVGVKARDLLTDEVIEIKAKLVINTSGPWV  250 (571)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEESSEEEEEEEE-ETTEEEEEEEEETTTCCEEEEEBSCEEECCGGGH
T ss_pred             HHHHHHHHHHHHHc-----CCeEEeccEEEEEEE-eCCEEEEEEEEEcCCCCEEEEEcCEEEECCChhH
Confidence            45666666655433     469999999999998 55553 34432   343  689999999997754

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=86.48  E-value=1.1  Score=36.15  Aligned_cols=40  Identities=28%  Similarity=0.375  Sum_probs=32.9

Q ss_pred             ceEEcCCceEEEEecCCCcEEEEe-CCCc--EEEcCEEEEecCh
Q psy13542         65 KKLLLKKEVTKINWEDPKGVVVTC-ADGT--QYSADRILITVSL  105 (147)
Q Consensus        65 ~~i~l~~~V~~I~~~~~~~v~v~~-~~g~--~~~ad~VI~t~P~  105 (147)
                      .++++++.|+.|+. +++.+.+.. .+|+  ++.+|++|+|+-.
T Consensus       108 v~~~~~~~v~~i~~-~~~~v~v~~~~~g~~~~~~~d~lviAtG~  150 (480)
T 3cgb_A          108 IDAKVRHEVTKVDT-EKKIVYAEHTKTKDVFEFSYDRLLIATGV  150 (480)
T ss_dssp             CEEESSEEEEEEET-TTTEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred             CEEEeCCEEEEEEC-CCCEEEEEEcCCCceEEEEcCEEEECCCC
Confidence            37999999999998 667788776 5576  7999999999864

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=86.33  E-value=1.3  Score=37.12  Aligned_cols=55  Identities=16%  Similarity=0.114  Sum_probs=40.7

Q ss_pred             HHHHHHHHhhCCCCCCCCCc-ceEEcCCceEEEEecCCCc---EEEEe-CCCc--EEEcCEEEEecCh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLS-KKLLLKKEVTKINWEDPKG---VVVTC-ADGT--QYSADRILITVSL  105 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g-~~i~l~~~V~~I~~~~~~~---v~v~~-~~g~--~~~ad~VI~t~P~  105 (147)
                      ..+.+.|.+.+...     | .+|+.+++|++|.. ++++   +.+.. .+|+  ++.||.||+|+-.
T Consensus       134 ~~l~~~L~~~~~~~-----gnv~i~~~~~v~~l~~-~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg  195 (602)
T 1kf6_A          134 FHMLHTLFQTSLQF-----PQIQRFDEHFVLDILV-DDGHVRGLVAMNMMEGTLVQIRANAVVMATGG  195 (602)
T ss_dssp             HHHHHHHHHHHTTC-----TTEEEEETEEEEEEEE-ETTEEEEEEEEETTTTEEEEEECSCEEECCCC
T ss_pred             HHHHHHHHHHHHhC-----CCcEEEeCCEEEEEEE-eCCEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence            46778888877643     3 58999999999987 5554   33332 5776  6899999999865

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=86.06  E-value=0.92  Score=35.77  Aligned_cols=39  Identities=13%  Similarity=0.210  Sum_probs=31.6

Q ss_pred             cceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecCh
Q psy13542         64 SKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        64 g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      |.+++++++|+.|+. .+.  +|++.+|+++.+|++|+|+-.
T Consensus        73 ~v~~~~~~~v~~i~~-~~~--~v~~~~g~~~~~d~lviAtG~  111 (408)
T 2gqw_A           73 EVEWLLGVTAQSFDP-QAH--TVALSDGRTLPYGTLVLATGA  111 (408)
T ss_dssp             SCEEEETCCEEEEET-TTT--EEEETTSCEEECSEEEECCCE
T ss_pred             CCEEEcCCEEEEEEC-CCC--EEEECCCCEEECCEEEECCCC
Confidence            458999999999987 433  466678889999999999854

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=85.94  E-value=0.57  Score=37.58  Aligned_cols=39  Identities=23%  Similarity=0.291  Sum_probs=30.6

Q ss_pred             cceEEcCCceEEEEecCCCcEEEEeCCC--cEEEcCEEEEecCh
Q psy13542         64 SKKLLLKKEVTKINWEDPKGVVVTCADG--TQYSADRILITVSL  105 (147)
Q Consensus        64 g~~i~l~~~V~~I~~~~~~~v~v~~~~g--~~~~ad~VI~t~P~  105 (147)
                      |.+++++++|++|.. .  ++.+++.+|  +++.+|.||+|+..
T Consensus       226 gv~i~~~~~v~~i~~-~--~v~v~~~~G~~~~i~~D~vv~a~G~  266 (458)
T 1lvl_A          226 GIALHLGHSVEGYEN-G--CLLANDGKGGQLRLEADRVLVAVGR  266 (458)
T ss_dssp             TCEEETTCEEEEEET-T--EEEEECSSSCCCEECCSCEEECCCE
T ss_pred             CCEEEECCEEEEEEe-C--CEEEEECCCceEEEECCEEEECcCC
Confidence            358999999999985 2  376765456  68999999999853

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=84.91  E-value=1.7  Score=32.60  Aligned_cols=40  Identities=20%  Similarity=0.356  Sum_probs=29.2

Q ss_pred             cceEEcCCceEEEEecCCC--cEEEEe-CCCc--EEEcCEEEEecC
Q psy13542         64 SKKLLLKKEVTKINWEDPK--GVVVTC-ADGT--QYSADRILITVS  104 (147)
Q Consensus        64 g~~i~l~~~V~~I~~~~~~--~v~v~~-~~g~--~~~ad~VI~t~P  104 (147)
                      |.+++++++|++|.. ++.  ++.+.. .+|+  ++.+|.||+++.
T Consensus       202 gv~i~~~~~v~~i~~-~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G  246 (325)
T 2q7v_A          202 KMKFIWDTAVEEIQG-ADSVSGVKLRNLKTGEVSELATDGVFIFIG  246 (325)
T ss_dssp             TEEEECSEEEEEEEE-SSSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred             CceEecCCceEEEcc-CCcEEEEEEEECCCCcEEEEEcCEEEEccC
Confidence            458999999999987 433  233332 2664  789999999984

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=84.86  E-value=1.1  Score=35.26  Aligned_cols=38  Identities=32%  Similarity=0.452  Sum_probs=31.6

Q ss_pred             ceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecCh
Q psy13542         65 KKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        65 ~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      .+++++++|+.|+. ...  .|++.+|+++.+|++|+|+-.
T Consensus        72 i~~~~~~~v~~id~-~~~--~v~~~~g~~~~~d~lvlAtG~  109 (410)
T 3ef6_A           72 IDMLTGPEVTALDV-QTR--TISLDDGTTLSADAIVIATGS  109 (410)
T ss_dssp             CEEEESCCEEEEET-TTT--EEEETTSCEEECSEEEECCCE
T ss_pred             CEEEeCCEEEEEEC-CCC--EEEECCCCEEECCEEEEccCC
Confidence            48999999999987 443  567788889999999999864

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=84.81  E-value=0.94  Score=36.62  Aligned_cols=40  Identities=18%  Similarity=0.312  Sum_probs=31.3

Q ss_pred             ceEEcCCceEEEEecCCCcEEEE-eCCCcEEEcCEEEEecCh
Q psy13542         65 KKLLLKKEVTKINWEDPKGVVVT-CADGTQYSADRILITVSL  105 (147)
Q Consensus        65 ~~i~l~~~V~~I~~~~~~~v~v~-~~~g~~~~ad~VI~t~P~  105 (147)
                      .+++++++|..|+. +++.+.+. ..+++++.+|++|+|+-.
T Consensus       107 v~v~~~~~v~~i~~-~~~~v~v~~~g~~~~~~~d~lviAtG~  147 (490)
T 2bc0_A          107 AKVYMESPVQSIDY-DAKTVTALVDGKNHVETYDKLIFATGS  147 (490)
T ss_dssp             CEEETTCCEEEEET-TTTEEEEEETTEEEEEECSEEEECCCE
T ss_pred             CEEEeCCEEEEEEC-CCCEEEEEeCCcEEEEECCEEEECCCC
Confidence            37899999999997 66777776 322457999999999864

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=84.81  E-value=1.2  Score=37.86  Aligned_cols=40  Identities=18%  Similarity=0.194  Sum_probs=32.2

Q ss_pred             ceEEcCCceEEEEecCCCcEE-EEeCCCcEEEcCEEEEecChh
Q psy13542         65 KKLLLKKEVTKINWEDPKGVV-VTCADGTQYSADRILITVSLG  106 (147)
Q Consensus        65 ~~i~l~~~V~~I~~~~~~~v~-v~~~~g~~~~ad~VI~t~P~~  106 (147)
                      .++ ++..|+.|.. +++++. |.+.+|+++.||.||+|+-..
T Consensus       133 V~I-~~~~V~~L~~-d~g~V~GV~t~~G~~i~Ad~VVLATG~~  173 (641)
T 3cp8_A          133 IDL-LQDTVIGVSA-NSGKFSSVTVRSGRAIQAKAAILACGTF  173 (641)
T ss_dssp             EEE-EECCEEEEEE-ETTEEEEEEETTSCEEEEEEEEECCTTC
T ss_pred             CEE-EeeEEEEEEe-cCCEEEEEEECCCcEEEeCEEEECcCCC
Confidence            366 4669999987 666765 888899899999999998654

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=84.74  E-value=1.3  Score=37.06  Aligned_cols=56  Identities=11%  Similarity=0.150  Sum_probs=39.0

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcE---EEEe-CCCc--EEEcCEEEEecCh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGV---VVTC-ADGT--QYSADRILITVSL  105 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v---~v~~-~~g~--~~~ad~VI~t~P~  105 (147)
                      ..+.+.|.+.+...     |.+|+++++|++|..+.++++   .+.. .+|+  ++.||.||+|+--
T Consensus       143 ~~l~~~L~~~~~~~-----gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg  204 (588)
T 2wdq_A          143 HALLHTLYQQNLKN-----HTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGG  204 (588)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCC
T ss_pred             HHHHHHHHHHHHhC-----CCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCC
Confidence            46677777666432     459999999999987224443   3332 5665  5899999999865

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=84.65  E-value=0.8  Score=37.47  Aligned_cols=51  Identities=16%  Similarity=0.233  Sum_probs=35.2

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEE--EEeCCCc----EEEcCEEEEec
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVV--VTCADGT----QYSADRILITV  103 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~--v~~~~g~----~~~ad~VI~t~  103 (147)
                      ..+.+.+.+.+...     |.++++|+.|++|+.   +++.  +...||+    ++.||.||.|+
T Consensus       272 ~~~~~~~~~~L~~~-----GV~v~~~~~v~~v~~---~~~~~~~~~~dg~~~~~~i~ad~viwa~  328 (502)
T 4g6h_A          272 KKLSSYAQSHLENT-----SIKVHLRTAVAKVEE---KQLLAKTKHEDGKITEETIPYGTLIWAT  328 (502)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEETTEEEEEECS---SEEEEEEECTTSCEEEEEEECSEEEECC
T ss_pred             HHHHHHHHHHHHhc-----ceeeecCceEEEEeC---CceEEEEEecCcccceeeeccCEEEEcc
Confidence            44555555555443     569999999999965   3443  3445663    68999999887

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=84.59  E-value=1  Score=35.08  Aligned_cols=37  Identities=16%  Similarity=0.237  Sum_probs=29.4

Q ss_pred             ceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecCh
Q psy13542         65 KKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        65 ~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      .+++++++|+.|+. ..  ..|+ .+|+++.+|++|+|+-.
T Consensus        75 v~~~~g~~v~~id~-~~--~~V~-~~g~~~~~d~lViATGs  111 (367)
T 1xhc_A           75 IEIRLAEEAKLIDR-GR--KVVI-TEKGEVPYDTLVLATGA  111 (367)
T ss_dssp             EEEECSCCEEEEET-TT--TEEE-ESSCEEECSEEEECCCE
T ss_pred             cEEEECCEEEEEEC-CC--CEEE-ECCcEEECCEEEECCCC
Confidence            47899999999987 43  3455 57778999999999864

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=83.82  E-value=1.7  Score=32.18  Aligned_cols=40  Identities=15%  Similarity=0.295  Sum_probs=29.5

Q ss_pred             cceEEcCCceEEEEecCCCcE-EEEeC---CCc--EEEcCEEEEecC
Q psy13542         64 SKKLLLKKEVTKINWEDPKGV-VVTCA---DGT--QYSADRILITVS  104 (147)
Q Consensus        64 g~~i~l~~~V~~I~~~~~~~v-~v~~~---~g~--~~~ad~VI~t~P  104 (147)
                      |.+++++++|++|.. +++++ .|.+.   +|+  ++.+|.||+++.
T Consensus       194 gv~v~~~~~v~~i~~-~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G  239 (310)
T 1fl2_A          194 NVDIILNAQTTEVKG-DGSKVVGLEYRDRVSGDIHNIELAGIFVQIG  239 (310)
T ss_dssp             TEEEESSEEEEEEEE-SSSSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred             CeEEecCCceEEEEc-CCCcEEEEEEEECCCCcEEEEEcCEEEEeeC
Confidence            458999999999987 55544 34433   353  689999999974

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=83.80  E-value=0.88  Score=36.96  Aligned_cols=38  Identities=24%  Similarity=0.386  Sum_probs=31.4

Q ss_pred             cceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecC
Q psy13542         64 SKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVS  104 (147)
Q Consensus        64 g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P  104 (147)
                      |.++++++.|++|+. .+.  +|++.+|+++.+|++|+|+-
T Consensus       104 gv~~~~g~~v~~id~-~~~--~V~~~~g~~i~yd~lviATG  141 (493)
T 1m6i_A          104 GVAVLTGKKVVQLDV-RDN--MVKLNDGSQITYEKCLIATG  141 (493)
T ss_dssp             EEEEEETCCEEEEEG-GGT--EEEETTSCEEEEEEEEECCC
T ss_pred             CeEEEcCCEEEEEEC-CCC--EEEECCCCEEECCEEEECCC
Confidence            458899999999987 443  56678898999999999985

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=83.67  E-value=1.4  Score=32.25  Aligned_cols=36  Identities=17%  Similarity=0.194  Sum_probs=29.0

Q ss_pred             ceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecCh
Q psy13542         65 KKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        65 ~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      .+++. ++|++|.. ++   .|.+.+|+++.+|.||+++..
T Consensus       189 v~i~~-~~v~~i~~-~~---~v~~~~g~~~~~D~vi~a~G~  224 (297)
T 3fbs_A          189 VRVET-TRIREIAG-HA---DVVLADGRSIALAGLFTQPKL  224 (297)
T ss_dssp             CEEEC-SCEEEEET-TE---EEEETTSCEEEESEEEECCEE
T ss_pred             cEEEc-ceeeeeec-CC---eEEeCCCCEEEEEEEEEccCc
Confidence            47875 89999976 33   677889999999999999843

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=83.49  E-value=2.1  Score=33.98  Aligned_cols=38  Identities=21%  Similarity=0.359  Sum_probs=29.4

Q ss_pred             eEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecCh
Q psy13542         66 KLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        66 ~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      ++++++.|.+|.. .+ ++.....+|+++.+|.||+++..
T Consensus       205 ~i~~~~~v~~i~~-~~-~v~~v~~~g~~i~~D~Vv~a~G~  242 (449)
T 3kd9_A          205 NLRLQEITMKIEG-EE-RVEKVVTDAGEYKAELVILATGI  242 (449)
T ss_dssp             EEEESCCEEEEEC-SS-SCCEEEETTEEEECSEEEECSCE
T ss_pred             EEEeCCeEEEEec-cC-cEEEEEeCCCEEECCEEEEeeCC
Confidence            7999999999986 44 44333456778999999999843

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=83.01  E-value=1  Score=37.85  Aligned_cols=56  Identities=16%  Similarity=0.150  Sum_probs=38.8

Q ss_pred             HHHHHHHHhhCCCCCCCCCcc--eEEcCCceEEEEecCC----CcEEEEeC------CC--cEEEcCEEEEecChh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSK--KLLLKKEVTKINWEDP----KGVVVTCA------DG--TQYSADRILITVSLG  106 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~--~i~l~~~V~~I~~~~~----~~v~v~~~------~g--~~~~ad~VI~t~P~~  106 (147)
                      ..+.+.|.+.+...     |.  +|+++++|+++.. ++    .+|+|++.      +|  ++++||.||.|.-..
T Consensus       141 ~~l~~~L~~~a~~~-----g~~v~v~~~~~v~~l~~-~~~~~~~~v~v~~~~~~~~~~G~~~~i~a~~vVgADG~~  210 (639)
T 2dkh_A          141 ARVHDHYLERMRNS-----PSRLEPHYARRVLDVKV-DHGAADYPVTVTLERCDAAHAGQIETVQARYVVGCDGAR  210 (639)
T ss_dssp             HHHHHHHHHHHHHS-----TTCCCCBCSEEEEEEEE-CTTCSSCCEEEEEEECSGGGTTCEEEEEEEEEEECCCTT
T ss_pred             HHHHHHHHHHHHhC-----CCCcEEecCCEEEEEEE-CCCCCcCCEEEEEEeccccCCCCeEEEEeCEEEECCCcc
Confidence            34555555555432     22  7999999999998 44    25777654      46  579999999998654

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=82.92  E-value=1.9  Score=32.17  Aligned_cols=40  Identities=25%  Similarity=0.283  Sum_probs=29.3

Q ss_pred             cceEEcCCceEEEEecCCCc---EEEEe-CCCc--EEEcCEEEEecC
Q psy13542         64 SKKLLLKKEVTKINWEDPKG---VVVTC-ADGT--QYSADRILITVS  104 (147)
Q Consensus        64 g~~i~l~~~V~~I~~~~~~~---v~v~~-~~g~--~~~ad~VI~t~P  104 (147)
                      |.+++++++|++|.. ++++   +.+.. .+|+  ++.+|.||+++.
T Consensus       204 gv~i~~~~~v~~i~~-~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G  249 (319)
T 3cty_A          204 NIPYIMNAQVTEIVG-DGKKVTGVKYKDRTTGEEKLIETDGVFIYVG  249 (319)
T ss_dssp             TCCEECSEEEEEEEE-SSSSEEEEEEEETTTCCEEEECCSEEEECCC
T ss_pred             CcEEEcCCeEEEEec-CCceEEEEEEEEcCCCceEEEecCEEEEeeC
Confidence            358999999999987 5442   33332 2664  689999999984

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=82.55  E-value=1.4  Score=37.45  Aligned_cols=55  Identities=16%  Similarity=0.126  Sum_probs=38.7

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCc---EEEEe-CCCc--EEEcCEEEEecCh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKG---VVVTC-ADGT--QYSADRILITVSL  105 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~---v~v~~-~~g~--~~~ad~VI~t~P~  105 (147)
                      ..+.+.|.+.+...     |.+|+.+++|.+|.. ++++   +.+.. .+|+  .+.||.||+|+--
T Consensus       158 ~~l~~~L~~~a~~~-----gv~i~~~~~v~~L~~-~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG  218 (660)
T 2bs2_A          158 HTMLFAVANECLKL-----GVSIQDRKEAIALIH-QDGKCYGAVVRDLVTGDIIAYVAKGTLIATGG  218 (660)
T ss_dssp             HHHHHHHHHHHHHH-----TCEEECSEEEEEEEE-ETTEEEEEEEEETTTCCEEEEECSEEEECCCC
T ss_pred             HHHHHHHHHHHHhC-----CCEEEECcEEEEEEe-cCCEEEEEEEEECCCCcEEEEEcCEEEEccCc
Confidence            35777777766432     358999999999987 4453   33332 5675  4899999999854

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=82.24  E-value=1.4  Score=35.20  Aligned_cols=40  Identities=23%  Similarity=0.378  Sum_probs=32.1

Q ss_pred             ceEEcCCceEEEEecCCCcEEEE-eCCCcEEEcCEEEEecCh
Q psy13542         65 KKLLLKKEVTKINWEDPKGVVVT-CADGTQYSADRILITVSL  105 (147)
Q Consensus        65 ~~i~l~~~V~~I~~~~~~~v~v~-~~~g~~~~ad~VI~t~P~  105 (147)
                      .+++++++|++|+. .++.+.++ ..+++++.+|++|+|+-.
T Consensus        73 i~~~~~~~V~~id~-~~~~v~v~~~~~~~~~~~d~lviAtG~  113 (452)
T 3oc4_A           73 IQLLLNREVVAMDV-ENQLIAWTRKEEQQWYSYDKLILATGA  113 (452)
T ss_dssp             EEEECSCEEEEEET-TTTEEEEEETTEEEEEECSEEEECCCC
T ss_pred             CEEEECCEEEEEEC-CCCEEEEEecCceEEEEcCEEEECCCc
Confidence            47889999999998 77777775 235568999999999854

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=82.11  E-value=1.7  Score=35.54  Aligned_cols=39  Identities=33%  Similarity=0.389  Sum_probs=31.6

Q ss_pred             eEEcCCceEEEEecCCCcEEEEe-CCCc--EEEcCEEEEecCh
Q psy13542         66 KLLLKKEVTKINWEDPKGVVVTC-ADGT--QYSADRILITVSL  105 (147)
Q Consensus        66 ~i~l~~~V~~I~~~~~~~v~v~~-~~g~--~~~ad~VI~t~P~  105 (147)
                      +++++++|++|+. .++.+.+.. .+|+  ++.+|++|+|+-.
T Consensus        74 ~~~~~~~V~~id~-~~~~v~~~~~~~g~~~~~~~d~lviAtG~  115 (565)
T 3ntd_A           74 EVRVKHEVVAIDR-AAKLVTVRRLLDGSEYQESYDTLLLSPGA  115 (565)
T ss_dssp             EEETTEEEEEEET-TTTEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred             EEEECCEEEEEEC-CCCEEEEEecCCCCeEEEECCEEEECCCC
Confidence            7899999999998 777777765 3343  7899999999854

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=81.86  E-value=2.2  Score=33.84  Aligned_cols=40  Identities=20%  Similarity=0.260  Sum_probs=31.6

Q ss_pred             ceEEcCCceEEEEecCCCcEEEEe-CCCc--EEEcCEEEEecCh
Q psy13542         65 KKLLLKKEVTKINWEDPKGVVVTC-ADGT--QYSADRILITVSL  105 (147)
Q Consensus        65 ~~i~l~~~V~~I~~~~~~~v~v~~-~~g~--~~~ad~VI~t~P~  105 (147)
                      .++++++.|..|.. .++.+.+.. .+|+  ++.+|++|+|+-.
T Consensus        71 v~~~~~~~v~~i~~-~~~~v~~~~~~~g~~~~~~~d~lviAtG~  113 (447)
T 1nhp_A           71 VNVFSNTEITAIQP-KEHQVTVKDLVSGEERVENYDKLIISPGA  113 (447)
T ss_dssp             CEEEETEEEEEEET-TTTEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred             CEEEECCEEEEEeC-CCCEEEEEecCCCceEEEeCCEEEEcCCC
Confidence            37889999999988 667777765 4565  4899999999853

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=81.81  E-value=2.6  Score=31.55  Aligned_cols=41  Identities=10%  Similarity=0.177  Sum_probs=29.9

Q ss_pred             cceEEcCCceEEEEecCCC--c---EEEEeC-CC--cEEEcCEEEEecCh
Q psy13542         64 SKKLLLKKEVTKINWEDPK--G---VVVTCA-DG--TQYSADRILITVSL  105 (147)
Q Consensus        64 g~~i~l~~~V~~I~~~~~~--~---v~v~~~-~g--~~~~ad~VI~t~P~  105 (147)
                      |.++++++.|.+|.. +++  +   +.+... +|  +++.+|.||+++..
T Consensus       209 gv~i~~~~~v~~i~~-~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~  257 (333)
T 1vdc_A          209 KIDVIWNSSVVEAYG-DGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGH  257 (333)
T ss_dssp             TEEEECSEEEEEEEE-SSSSSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred             CeeEecCCceEEEeC-CCCccceeeEEEEecCCCceEEEecCEEEEEeCC
Confidence            458999999999987 543  3   444331 45  57899999999853

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=81.78  E-value=1.8  Score=34.39  Aligned_cols=38  Identities=18%  Similarity=0.271  Sum_probs=29.2

Q ss_pred             ceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecChh
Q psy13542         65 KKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLG  106 (147)
Q Consensus        65 ~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~~  106 (147)
                      .+++.+ .|++|+. ++.  +|++++|+++.+|++|+|+-..
T Consensus        71 v~~i~~-~v~~Id~-~~~--~V~~~~g~~i~YD~LViAtG~~  108 (430)
T 3hyw_A           71 IEFINE-KAESIDP-DAN--TVTTQSGKKIEYDYLVIATGPK  108 (430)
T ss_dssp             EEEECS-CEEEEET-TTT--EEEETTCCEEECSEEEECCCCE
T ss_pred             cEEEEe-EEEEEEC-CCC--EEEECCCCEEECCEEEEeCCCC
Confidence            355554 7999987 443  4678899999999999999753

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=81.74  E-value=3.7  Score=33.80  Aligned_cols=39  Identities=18%  Similarity=0.275  Sum_probs=32.3

Q ss_pred             eEEcCCceEEEEecCCCcEEEEe-CCCc--EEEcCEEEEecCh
Q psy13542         66 KLLLKKEVTKINWEDPKGVVVTC-ADGT--QYSADRILITVSL  105 (147)
Q Consensus        66 ~i~l~~~V~~I~~~~~~~v~v~~-~~g~--~~~ad~VI~t~P~  105 (147)
                      ++++++.|++|+. .++.+.+.. .+|+  ++.+|++|+|+-.
T Consensus       109 ~v~~~~~V~~id~-~~~~v~v~~~~~g~~~~~~~d~lviAtG~  150 (588)
T 3ics_A          109 DIRVLSEVVKINK-EEKTITIKNVTTNETYNEAYDVLILSPGA  150 (588)
T ss_dssp             EEECSEEEEEEET-TTTEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred             EEEECCEEEEEEC-CCCEEEEeecCCCCEEEEeCCEEEECCCC
Confidence            7999999999998 777787775 4565  6899999999854

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=80.86  E-value=4.2  Score=32.15  Aligned_cols=37  Identities=16%  Similarity=0.127  Sum_probs=29.8

Q ss_pred             ceEEcCCceEEEEecCCCcEEEEeCCC--cEEEcCEEEEecC
Q psy13542         65 KKLLLKKEVTKINWEDPKGVVVTCADG--TQYSADRILITVS  104 (147)
Q Consensus        65 ~~i~l~~~V~~I~~~~~~~v~v~~~~g--~~~~ad~VI~t~P  104 (147)
                      .++++++.|++|+.   +++.+...+|  +++.||.+|++++
T Consensus       215 V~~~~~~~v~~v~~---~~~~~~~~~g~~~~i~~d~vi~~~G  253 (430)
T 3hyw_A          215 IDWIANVAVKAIEP---DKVIYEDLNGNTHEVPAKFTMFMPS  253 (430)
T ss_dssp             CEEECSCEEEEECS---SEEEEECTTSCEEEEECSEEEEECE
T ss_pred             eEEEeCceEEEEeC---CceEEEeeCCCceEeecceEEEecc
Confidence            58999999999964   5677776555  5789999999975

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=80.40  E-value=2.7  Score=33.63  Aligned_cols=40  Identities=13%  Similarity=0.263  Sum_probs=32.3

Q ss_pred             ceEEcCCceEEEEecCCCcEEEEe-CCCc--EEEcCEEEEecCh
Q psy13542         65 KKLLLKKEVTKINWEDPKGVVVTC-ADGT--QYSADRILITVSL  105 (147)
Q Consensus        65 ~~i~l~~~V~~I~~~~~~~v~v~~-~~g~--~~~ad~VI~t~P~  105 (147)
                      .+++++++|++|+. .++.+.+.. .+|+  ++.+|++|+|+-.
T Consensus        81 i~~~~~~~V~~id~-~~~~v~~~~~~~g~~~~~~~d~lviAtG~  123 (472)
T 3iwa_A           81 VEALVETRAHAIDR-AAHTVEIENLRTGERRTLKYDKLVLALGS  123 (472)
T ss_dssp             CEEECSEEEEEEET-TTTEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred             cEEEECCEEEEEEC-CCCEEEEeecCCCCEEEEECCEEEEeCCC
Confidence            47889999999998 777777775 3454  7899999999854

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=80.38  E-value=1.7  Score=33.77  Aligned_cols=48  Identities=15%  Similarity=0.258  Sum_probs=33.9

Q ss_pred             HHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecC
Q psy13542         46 NVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVS  104 (147)
Q Consensus        46 ~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P  104 (147)
                      .+.+.+.+.+...     |.+++++++|++|..   ++  |++.+|+ +.+|.||+++.
T Consensus       184 ~~~~~l~~~l~~~-----gV~i~~~~~v~~i~~---~~--v~~~~g~-i~~D~vi~a~G  231 (367)
T 1xhc_A          184 ELSNMIKDMLEET-----GVKFFLNSELLEANE---EG--VLTNSGF-IEGKVKICAIG  231 (367)
T ss_dssp             HHHHHHHHHHHHT-----TEEEECSCCEEEECS---SE--EEETTEE-EECSCEEEECC
T ss_pred             HHHHHHHHHHHHC-----CCEEEcCCEEEEEEe---eE--EEECCCE-EEcCEEEECcC
Confidence            3444444444433     468999999999973   23  5667887 99999999874

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=80.33  E-value=1.7  Score=34.10  Aligned_cols=37  Identities=16%  Similarity=0.276  Sum_probs=30.9

Q ss_pred             ceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecC
Q psy13542         65 KKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVS  104 (147)
Q Consensus        65 ~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P  104 (147)
                      .+++++++|+.|+. .+.  .|++.+|+++.+|++|+|+-
T Consensus        80 i~~~~~~~v~~id~-~~~--~v~~~~g~~~~~d~lvlAtG  116 (415)
T 3lxd_A           80 VEMKLGAEVVSLDP-AAH--TVKLGDGSAIEYGKLIWATG  116 (415)
T ss_dssp             EEEEETCCEEEEET-TTT--EEEETTSCEEEEEEEEECCC
T ss_pred             cEEEeCCEEEEEEC-CCC--EEEECCCCEEEeeEEEEccC
Confidence            48999999999987 433  56778888999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	147
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	7e-11
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	2e-10
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	2e-09
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	2e-04
d1aoga2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Trypa	0.004

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 7e-11
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 3/90 (3%)

Query: 39  WKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADR 98
              GG    F     Q+  +    L  ++ L++ V  I+    + V+V   +   Y A  
Sbjct: 196 TTNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTR-ENVLVETLNHEMYEAKY 254

Query: 99  ILITVSLGVLKSNLITFVPPLPPKKLTAIE 128
           ++  +   +     I F PPLP  +   I 
Sbjct: 255 VISAIPPTLGMK--IHFNPPLPMMRNQMIT 282

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 55.0 bits (130), Expect = 2e-10
 Identities = 24/54 (44%), Positives = 33/54 (61%)

Query: 75  KINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIE 128
           +     P GV V   D + YSAD ++++ SLGVL+S+LI F P LP  K+ AI 
Sbjct: 234 REIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIY 287

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 52.8 bits (125), Expect = 2e-09
 Identities = 21/120 (17%), Positives = 40/120 (33%), Gaps = 13/120 (10%)

Query: 11  YDGSENWFETSARGLDSFTDLEGCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLK 70
            +    ++ +    L                 G   +   + + +  +            
Sbjct: 204 LNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDKLPTAMYRDIQDKV--------HFN 255

Query: 71  KEVTKINWEDPKGVVVT---CADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAI 127
            +V KI   D K  VV      +    +AD +++  +   ++  LI F PPL PKK  A+
Sbjct: 256 AQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVR--LIKFNPPLLPKKAHAL 313

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 37.8 bits (86), Expect = 2e-04
 Identities = 11/87 (12%), Positives = 22/87 (25%), Gaps = 10/87 (11%)

Query: 36  GVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGT--Q 93
            +    GG   +   L           L     +   V  +  ED    ++    G   +
Sbjct: 213 ALSTFDGGLQVLIDALAAS--------LGDAAHVGARVEGLAREDGGWRLIIEEHGRRAE 264

Query: 94  YSADRILITVSLGVLKSNLITFVPPLP 120
            S  ++++          L      L 
Sbjct: 265 LSVAQVVLAAPAHATAKLLRPLDDALA 291

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 33.2 bits (75), Expect = 0.004
 Identities = 7/38 (18%), Positives = 16/38 (42%)

Query: 66  KLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITV 103
           ++L K+   K+         VT   G +   D +++ +
Sbjct: 80  QILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAI 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	147
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.33
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.31
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	98.94
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.85
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.67
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	98.32
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.06
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.91
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.79
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	97.62
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	97.58
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	97.55
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	97.47
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	97.34
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.31
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	97.31
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	97.09
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.66
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.63
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.57
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	96.43
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	96.37
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.23
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.2
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.15
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	96.09
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	95.89
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.62
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	95.42
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.32
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	95.3
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	94.72
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	94.45
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	92.27
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	92.22
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	91.8
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	91.71
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	91.16
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	88.78
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	87.85
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	87.24
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	86.68
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	84.35
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	83.68
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	83.58
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	81.7
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	80.78

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.33  E-value=2.9e-12  Score=95.63  Aligned_cols=83  Identities=20%  Similarity=0.323  Sum_probs=72.9

Q ss_pred             cCCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEe----CCCcEEEcCEEEEecChhHHhhCCccc
Q psy13542         40 KKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTC----ADGTQYSADRILITVSLGVLKSNLITF  115 (147)
Q Consensus        40 ~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~----~~g~~~~ad~VI~t~P~~~l~~~~~~f  115 (147)
                      +.+|+..++++|++..+        ..|++|++|++|.. ++++++|+.    .++++++||+||+|+|+.+|+.+  .|
T Consensus       233 ~~~~~~~l~~~l~~~~g--------~~i~~~~~V~~I~~-~~~~v~v~~~~~~~~~~~~~aD~VI~A~p~~~l~~i--~~  301 (370)
T d2iida1         233 IVDGMDKLPTAMYRDIQ--------DKVHFNAQVIKIQQ-NDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLI--KF  301 (370)
T ss_dssp             ETTCTTHHHHHHHHHTG--------GGEESSCEEEEEEE-CSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTTS--EE
T ss_pred             chhhHHHHHHHHHHhcC--------CccccCceEEEEEE-eCCeEEEEEEecCCCeEEEEeeEEEecCCHHHHhhC--cc
Confidence            79999999999998875        38999999999999 888887764    34578999999999999999998  89


Q ss_pred             CCCCCHHHHHHHhcCCCc
Q psy13542        116 VPPLPPKKLTAIELTNLT  133 (147)
Q Consensus       116 ~p~Lp~~~~~ai~~~~~g  133 (147)
                      .|+||+++.++++.+...
T Consensus       302 ~p~l~~~~~~ai~~~~~~  319 (370)
T d2iida1         302 NPPLLPKKAHALRSVFTP  319 (370)
T ss_dssp             ESCCCHHHHHHHHHCCCT
T ss_pred             CCCCCHHHHHHHHhcCCc
Confidence            999999999999887653

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=3.5e-12  Score=95.99  Aligned_cols=82  Identities=22%  Similarity=0.295  Sum_probs=75.7

Q ss_pred             cCCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecChhHHhhCCcccCCCC
Q psy13542         40 KKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPL  119 (147)
Q Consensus        40 ~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~~~l~~~~~~f~p~L  119 (147)
                      +.+|++.+++++++..+        ++|++|++|++|.. ++++|.|++.||++++||+||+|+|+.+++++  .|.|+|
T Consensus       205 ~~~~~~~~~~~l~~~~g--------~~i~~~~~v~~I~~-~~~~v~v~~~~g~~~~ad~vI~a~p~~~~~~~--~~~p~l  273 (383)
T d2v5za1         205 FVGGSGQVSERIMDLLG--------DRVKLERPVIYIDQ-TRENVLVETLNHEMYEAKYVISAIPPTLGMKI--HFNPPL  273 (383)
T ss_dssp             ETTCTHHHHHHHHHHHG--------GGEEESCCEEEEEC-SSSSEEEEETTSCEEEESEEEECSCGGGGGGS--EEESCC
T ss_pred             eccchhHHHHHHHHHcC--------CeEEecCcceEEEe-cCCeEEEEECCCCEEECCEEEECCCHHHHhhC--ccCCCC
Confidence            68999999999998775        48999999999999 88899999999999999999999999999998  899999


Q ss_pred             CHHHHHHHhcCCC
Q psy13542        120 PPKKLTAIELTNL  132 (147)
Q Consensus       120 p~~~~~ai~~~~~  132 (147)
                      |+.+.++++++..
T Consensus       274 ~~~~~~~~~~~~~  286 (383)
T d2v5za1         274 PMMRNQMITRVFP  286 (383)
T ss_dssp             CHHHHHHTTSCCC
T ss_pred             CHHHHHHHHHhcc
Confidence            9999999988754

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.94  E-value=1e-09  Score=79.82  Aligned_cols=78  Identities=12%  Similarity=0.159  Sum_probs=61.1

Q ss_pred             cCCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeC-CC--cEEEcCEEEEecChhHHhhCCcccC
Q psy13542         40 KKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCA-DG--TQYSADRILITVSLGVLKSNLITFV  116 (147)
Q Consensus        40 ~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~-~g--~~~~ad~VI~t~P~~~l~~~~~~f~  116 (147)
                      ++||++.++++|.+.++        ++|++|++|++|.. ++++++|++. +|  ++++||+||+|+|+..+.++    .
T Consensus       217 ~~~g~~~~~~~l~~~~g--------~~i~~~~~V~~I~~-~~~~~~v~~~~~~~~~~~~ad~VV~a~p~~~~~~L----l  283 (347)
T d2ivda1         217 FDGGLQVLIDALAASLG--------DAAHVGARVEGLAR-EDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAKL----L  283 (347)
T ss_dssp             ETTCTHHHHHHHHHHHG--------GGEESSEEEEEEEC-C--CCEEEEEETTEEEEEECSEEEECSCHHHHHHH----H
T ss_pred             cCCchHHHHHHHHHHhh--------cccccCCEEEEEEE-eCCeEEEEEEcCCeEEEEECCEEEECCCHHHHHHh----c
Confidence            69999999999999885        38999999999998 7777766654 33  46899999999999999876    4


Q ss_pred             CCCCHHHHHHHhcC
Q psy13542        117 PPLPPKKLTAIELT  130 (147)
Q Consensus       117 p~Lp~~~~~ai~~~  130 (147)
                      ++++++....+..+
T Consensus       284 ~~~~~~~~~~~~~~  297 (347)
T d2ivda1         284 RPLDDALAALVAGI  297 (347)
T ss_dssp             TTTCHHHHHHHHTC
T ss_pred             cCCCHHHHHHhhcc
Confidence            45666655555554

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.85  E-value=4.9e-09  Score=74.08  Aligned_cols=72  Identities=40%  Similarity=0.616  Sum_probs=65.8

Q ss_pred             cceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecChhHHhhCCcccCCCCCHHHHHHHhcCCCccee
Q psy13542         64 SKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLGVLKSNLITFVPPLPPKKLTAIELTNLTSIQ  136 (147)
Q Consensus        64 g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~~~l~~~~~~f~p~Lp~~~~~ai~~~~~g~~~  136 (147)
                      +..++++++|..|.. .++.+.|++.+|+.+.+|++++++|+..++...+.|.|+||+.+..++.+..++.+.
T Consensus       224 ~~~i~~~~~v~~i~~-~~~~v~v~~~~g~~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~~~~~~~~~  295 (347)
T d1b5qa1         224 DPRLQLNKVVREIKY-SPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVGVN  295 (347)
T ss_dssp             CTTEESSCCEEEEEE-CSSCEEEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSCBTTCC
T ss_pred             ccccccccccccccc-cCccEEEEECCCCEEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHHhcCCcccc
Confidence            358999999999999 888999999999999999999999999999988899999999999999988776554

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.67  E-value=6e-09  Score=73.51  Aligned_cols=61  Identities=7%  Similarity=0.071  Sum_probs=49.3

Q ss_pred             ecCCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCC-CcEEEEeCCCcEEEcCEEEEecCh
Q psy13542         39 WKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDP-KGVVVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        39 ~~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~-~~v~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      +++||+++|+++|++.+...     |++|++|++|++|..+++ +++...+.+|++++||+||++ |.
T Consensus       230 ~~~gG~~~l~~~l~~~~~~~-----G~~i~~~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~~-~s  291 (297)
T d2bcgg1         230 YPMYGLGELPQGFARLSAIY-----GGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIAD-PT  291 (297)
T ss_dssp             EETTCTTHHHHHHHHHHHHT-----TCEEECSCCCCEEEEETTTTEEEEEEETTEEEECSCEEEC-GG
T ss_pred             eccCcHHHHHHHHHHHHHhc-----CCEEEeCCEeeEEEEECCCCEEEEEEcCCEEEECCEEEEC-hh
Confidence            37999999999999988754     579999999999977333 346555678889999999987 44

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.06  E-value=3.1e-06  Score=60.63  Aligned_cols=65  Identities=18%  Similarity=0.231  Sum_probs=51.2

Q ss_pred             cCCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCC-----cEEEE--e---CCCcEEEcCEEEEecChhHHh
Q psy13542         40 KKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPK-----GVVVT--C---ADGTQYSADRILITVSLGVLK  109 (147)
Q Consensus        40 ~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~-----~v~v~--~---~~g~~~~ad~VI~t~P~~~l~  109 (147)
                      .++|++.++++|++.+..       .+|++|++|++|..+.++     ...+.  .   .+++++.||+||+|+|+..++
T Consensus       226 ~~~g~~~l~~~l~~~l~~-------~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~l~  298 (373)
T d1seza1         226 FLGGMQTLTDAICKDLRE-------DELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVK  298 (373)
T ss_dssp             ETTCTHHHHHHHHTTSCT-------TTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHH
T ss_pred             ecccchHHHHHHHHHhcc-------ceEecCCEEEEEEEeCCcccccccceEEecccCCCCceEEECCEEEECCchHHhh
Confidence            689999999999999974       389999999999873322     12232  2   234678999999999999998


Q ss_pred             hC
Q psy13542        110 SN  111 (147)
Q Consensus       110 ~~  111 (147)
                      .+
T Consensus       299 ~l  300 (373)
T d1seza1         299 SM  300 (373)
T ss_dssp             TS
T ss_pred             hc
Confidence            87

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.91  E-value=1.2e-05  Score=52.30  Aligned_cols=54  Identities=19%  Similarity=0.300  Sum_probs=44.2

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEec
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITV  103 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~  103 (147)
                      ..+.+.+.+.+.+.     |.++++|+.|++|+.+.++.+.|++++|+++.||.||+|+
T Consensus        64 ~~~~~~l~~~l~~~-----GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          64 HTLREELTKQLTAN-----GIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred             hHHHHHHHHHHHhc-----CcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence            56666666666654     5699999999999874566788999999999999999985

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=2.5e-05  Score=52.08  Aligned_cols=53  Identities=15%  Similarity=0.264  Sum_probs=43.7

Q ss_pred             HHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecC
Q psy13542         46 NVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVS  104 (147)
Q Consensus        46 ~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P  104 (147)
                      .+.+.+.+.+...     |.++++|+.|++|.. +++++.|++++|+++.||.||+|+-
T Consensus        84 ~~~~~~~~~l~~~-----GV~~~~~~~V~~i~~-~~~~~~v~l~~G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2          84 YLSNWTMEKVRRE-----GVKVMPNAIVQSVGV-SSGKLLIKLKDGRKVETDHIVAAVG  136 (137)
T ss_dssp             HHHHHHHHHHHTT-----TCEEECSCCEEEEEE-ETTEEEEEETTSCEEEESEEEECCC
T ss_pred             HHHHHHHHHHHhC-----CcEEEeCCEEEEEEe-cCCEEEEEECCCCEEECCEEEEeec
Confidence            3555555666544     569999999999998 7788999999999999999999973

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.62  E-value=5.2e-05  Score=49.10  Aligned_cols=54  Identities=11%  Similarity=0.151  Sum_probs=41.7

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEec
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITV  103 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~  103 (147)
                      ..+.+.+.+.+...     |.++++++.|++|..+.++.+++++++|+++.+|.||+|+
T Consensus        62 ~~~~~~~~~~l~~~-----GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~  115 (116)
T d1gesa2          62 PMISETLVEVMNAE-----GPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAI  115 (116)
T ss_dssp             HHHHHHHHHHHHHH-----SCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred             hhhHHHHHHHHHHC-----CCEEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEec
Confidence            34445555555433     4599999999999884455689999999999999999986

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.58  E-value=7.8e-05  Score=48.09  Aligned_cols=54  Identities=13%  Similarity=0.193  Sum_probs=42.7

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEec
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITV  103 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~  103 (147)
                      ..+.+.+.+.+...     |.++++|+.|++|..+.++...+++.+|+++.||.||+|+
T Consensus        62 ~~~~~~~~~~l~~~-----GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~  115 (117)
T d1feca2          62 SELRKQLTEQLRAN-----GINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAI  115 (117)
T ss_dssp             HHHHHHHHHHHHHT-----TEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred             chhhHHHHHHHhhC-----cEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEec
Confidence            44566666666544     5699999999999873455567899999999999999986

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=97.55  E-value=4.7e-05  Score=55.40  Aligned_cols=55  Identities=20%  Similarity=0.419  Sum_probs=45.8

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecChh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLG  106 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~~  106 (147)
                      ..+.++|.+.+...     |.+++.+++|++|.. .+++|.|.|++| ++.||+||+|+-..
T Consensus       150 ~~~~~~l~~~a~~~-----Gv~i~~~~~V~~i~~-~~~~v~V~t~~g-~i~a~~VViAaG~~  204 (281)
T d2gf3a1         150 ENCIRAYRELAEAR-----GAKVLTHTRVEDFDI-SPDSVKIETANG-SYTADKLIVSMGAW  204 (281)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEECSCCEEEEEE-CSSCEEEEETTE-EEEEEEEEECCGGG
T ss_pred             cccccccccccccc-----cccccCCcEEEEEEE-ECCEEEEEECCc-EEEcCEEEECCCCc
Confidence            56777777666543     569999999999999 888999999998 79999999998554

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.47  E-value=0.00015  Score=47.05  Aligned_cols=54  Identities=20%  Similarity=0.340  Sum_probs=42.1

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEE-cCEEEEec
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYS-ADRILITV  103 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~-ad~VI~t~  103 (147)
                      ..+.+.+.+.+...     |.++++++.|++|....++.+.+++.+|++.. +|.||+|+
T Consensus        63 ~~~~~~~~~~l~~~-----gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          63 ESVINVLENDMKKN-----NINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred             HHHHHHHHHHHHhC-----CCEEEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence            45556666666543     46999999999999745667899999998875 69999985

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=97.34  E-value=8.6e-05  Score=53.64  Aligned_cols=55  Identities=13%  Similarity=0.175  Sum_probs=45.1

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecChh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLG  106 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~~  106 (147)
                      ..+.+.|.+.+...     |.+|+.+++|+.|.. +++.+.|++++| ++.||+||+|+-..
T Consensus       151 ~~~~~~l~~~~~~~-----Gv~i~~~~~V~~i~~-~~~~~~V~t~~g-~i~a~~vV~AaG~~  205 (276)
T d1ryia1         151 YFVCKAYVKAAKML-----GAEIFEHTPVLHVER-DGEALFIKTPSG-DVWANHVVVASGVW  205 (276)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEETTCCCCEEEC-SSSSEEEEETTE-EEEEEEEEECCGGG
T ss_pred             ccchhHHHHHHHHc-----CCEEecceEEEeEEe-ecceEEEecCCe-EEEcCEEEECCCcc
Confidence            56677776666543     569999999999998 778899999888 79999999998654

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.31  E-value=0.00021  Score=46.30  Aligned_cols=53  Identities=28%  Similarity=0.312  Sum_probs=41.2

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCC---cEEEcCEEEEec
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADG---TQYSADRILITV  103 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g---~~~~ad~VI~t~  103 (147)
                      ..+.+.+.+.+...     |.++++++.|++|.. .+++++|++.++   +++.||.|++|+
T Consensus        63 ~ei~~~l~~~l~~~-----Gv~i~~~~~v~~i~~-~~~~v~v~~~~~~~~~~~~~D~vlvAv  118 (119)
T d3lada2          63 EQVAKEAQKILTKQ-----GLKILLGARVTGTEV-KNKQVTVKFVDAEGEKSQAFDKLIVAV  118 (119)
T ss_dssp             HHHHHHHHHHHHHT-----TEEEEETCEEEEEEE-CSSCEEEEEESSSEEEEEEESEEEECS
T ss_pred             chhHHHHHHHHHhc-----CceeecCcEEEEEEE-eCCEEEEEEEECCCCEEEECCEEEEee
Confidence            45556666666443     469999999999999 778888887554   579999999986

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=97.31  E-value=0.00016  Score=51.55  Aligned_cols=59  Identities=15%  Similarity=0.236  Sum_probs=46.8

Q ss_pred             CCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcE-EEEeCCCcEEEcCEEEEecCh
Q psy13542         41 KGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGV-VVTCADGTQYSADRILITVSL  105 (147)
Q Consensus        41 ~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v-~v~~~~g~~~~ad~VI~t~P~  105 (147)
                      ......+.+.|.+.+...     |.+|+++++|+.|.. +++.+ .|.+++|++++||+||+|+--
T Consensus       106 ~~~~~~i~~~L~~~~~~~-----gv~i~~~~~v~~i~~-~~~~~~~v~~~~g~~i~a~~vI~AtGg  165 (251)
T d2i0za1         106 SNKAQSVVDALLTRLKDL-----GVKIRTNTPVETIEY-ENGQTKAVILQTGEVLETNHVVIAVGG  165 (251)
T ss_dssp             TCCHHHHHHHHHHHHHHT-----TCEEECSCCEEEEEE-ETTEEEEEEETTCCEEECSCEEECCCC
T ss_pred             cccHHHHHHHHHHHHHHc-----CCcccCCcEEEEEEE-ECCEEEEEEeCCCCeEecCeEEEccCC
Confidence            344567888888777543     469999999999998 55655 578899999999999999853

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=97.09  E-value=0.00032  Score=51.36  Aligned_cols=55  Identities=24%  Similarity=0.206  Sum_probs=42.7

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcE-EEEeCCCcEEEcCEEEEecChh
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGV-VVTCADGTQYSADRILITVSLG  106 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v-~v~~~~g~~~~ad~VI~t~P~~  106 (147)
                      ..+..++.+.+...     |.+|+.+++|++|.. +++++ .|.|.+| +++||+||+|+-..
T Consensus       148 ~~l~~~l~~~a~~~-----gv~i~~~~~V~~i~~-~~~~v~~V~T~~g-~i~a~~VV~aaG~~  203 (305)
T d1pj5a2         148 ARAVQLLIKRTESA-----GVTYRGSTTVTGIEQ-SGGRVTGVQTADG-VIPADIVVSCAGFW  203 (305)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEECSCCEEEEEE-ETTEEEEEEETTE-EEECSEEEECCGGG
T ss_pred             hhhhhhHHhhhhcc-----cccccCCceEEEEEE-eCCEEEEEeccce-eEECCEEEEecchh
Confidence            45666666555433     469999999999999 77775 4888888 79999999999654

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.66  E-value=0.00085  Score=42.91  Aligned_cols=51  Identities=20%  Similarity=0.313  Sum_probs=37.8

Q ss_pred             HHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeC-CC--cEEEcCEEEEe
Q psy13542         46 NVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCA-DG--TQYSADRILIT  102 (147)
Q Consensus        46 ~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~-~g--~~~~ad~VI~t  102 (147)
                      .+.+.+.+.+...     |.++++++.|++|.. +++++.|+.. +|  +++.||.||++
T Consensus        64 ~~~~~l~~~l~~~-----GI~i~~~~~v~~i~~-~~~~~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          64 QMAAIIKKRLKKK-----GVEVVTNALAKGAEE-REDGVTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             HHHHHHHHHHHHT-----TCEEEESEEEEEEEE-ETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred             hhHHHHHHHHHhc-----CCEEEcCCEEEEEEE-cCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence            4555666665544     469999999999998 6677777653 44  56899999985

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.63  E-value=0.0019  Score=42.33  Aligned_cols=40  Identities=23%  Similarity=0.390  Sum_probs=32.2

Q ss_pred             cceEEcCCceEEEEecCC-CcE-EEEeCCCcEEEcCEEEEec
Q psy13542         64 SKKLLLKKEVTKINWEDP-KGV-VVTCADGTQYSADRILITV  103 (147)
Q Consensus        64 g~~i~l~~~V~~I~~~~~-~~v-~v~~~~g~~~~ad~VI~t~  103 (147)
                      |.++++|+.|++|....+ ..+ .|.+.+|+++.||.||+++
T Consensus        91 GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~  132 (133)
T d1q1ra2          91 GVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGI  132 (133)
T ss_dssp             TCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECC
T ss_pred             ccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEee
Confidence            458999999999987322 234 4778999999999999986

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.57  E-value=0.0019  Score=41.71  Aligned_cols=52  Identities=19%  Similarity=0.291  Sum_probs=37.6

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEec
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITV  103 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~  103 (147)
                      ..+.+.+.+.+...     |.++++++.|++|.. + +.+.....+|+++.||.||+|+
T Consensus        72 ~~~~~~~~~~l~~~-----gv~~~~~~~v~~i~~-~-~~~~~v~~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          72 KEFTDVLTEEMEAN-----NITIATGETVERYEG-D-GRVQKVVTDKNAYDADLVVVAV  123 (123)
T ss_dssp             HHHHHHHHHHHHTT-----TEEEEESCCEEEEEC-S-SBCCEEEESSCEEECSEEEECS
T ss_pred             hhhHHHHHHHhhcC-----CeEEEeCceEEEEEc-C-CCEEEEEeCCCEEECCEEEEEC
Confidence            34555555555544     569999999999986 4 3444345678899999999985

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=96.43  E-value=0.002  Score=41.91  Aligned_cols=53  Identities=17%  Similarity=0.263  Sum_probs=39.8

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeC--CC--cEEEcCEEEEec
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCA--DG--TQYSADRILITV  103 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~--~g--~~~~ad~VI~t~  103 (147)
                      ..+.+.+.+.+...     |.++++++.|.+|.. .++++.|++.  +|  ++++||.|++|+
T Consensus        67 ~~~~~~l~~~l~~~-----gv~~~~~~~v~~v~~-~~~g~~v~~~~~~g~~~~i~~D~vl~A~  123 (125)
T d1ojta2          67 RDLVKVWQKQNEYR-----FDNIMVNTKTVAVEP-KEDGVYVTFEGANAPKEPQRYDAVLVAA  123 (125)
T ss_dssp             HHHHHHHHHHHGGG-----EEEEECSCEEEEEEE-ETTEEEEEEESSSCCSSCEEESCEEECC
T ss_pred             hhHHHHHHHHHHHc-----CcccccCcEEEEEEE-cCCcEEEEEEeCCCCeEEEEcCEEEEec
Confidence            35566666666544     569999999999998 6677766653  33  479999999986

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.37  E-value=0.0021  Score=47.80  Aligned_cols=41  Identities=20%  Similarity=0.068  Sum_probs=33.0

Q ss_pred             ceEEcCCceEEEEecCCCcEEEEeCCC------cEEEcCEEEEecChh
Q psy13542         65 KKLLLKKEVTKINWEDPKGVVVTCADG------TQYSADRILITVSLG  106 (147)
Q Consensus        65 ~~i~l~~~V~~I~~~~~~~v~v~~~~g------~~~~ad~VI~t~P~~  106 (147)
                      ..|++|+.|++|++ .+++++|++.++      .+..||+||+|+-..
T Consensus       128 ~~I~~~t~V~~v~~-~~~~w~Vt~~~~~~~~~~~~~~~d~VI~AtG~~  174 (335)
T d2gv8a1         128 PFIKLATDVLDIEK-KDGSWVVTYKGTKAGSPISKDIFDAVSICNGHY  174 (335)
T ss_dssp             GGEECSEEEEEEEE-ETTEEEEEEEESSTTCCEEEEEESEEEECCCSS
T ss_pred             hcccCceEEEEEEe-cCCEEEEEEEecCCCCeEEEEEeeEEEEccccc
Confidence            48999999999999 788888876533      145799999998654

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.23  E-value=0.0056  Score=39.38  Aligned_cols=49  Identities=22%  Similarity=0.299  Sum_probs=36.3

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEec
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITV  103 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~  103 (147)
                      ..+.+.+.+.+.+.     |.++++++.|+++..   +  .|++.||+++.||.||+|+
T Consensus        72 ~~~~~~~~~~l~~~-----GV~i~~~~~v~~~~~---~--~v~l~dg~~i~~D~vi~a~  120 (121)
T d1d7ya2          72 ATLADFVARYHAAQ-----GVDLRFERSVTGSVD---G--VVLLDDGTRIAADMVVVGI  120 (121)
T ss_dssp             HHHHHHHHHHHHTT-----TCEEEESCCEEEEET---T--EEEETTSCEEECSEEEECS
T ss_pred             HHHHHHHHHHHHHC-----CcEEEeCCEEEEEeC---C--EEEECCCCEEECCEEEEee
Confidence            34445555555443     469999999999875   2  3667899999999999986

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.20  E-value=0.0025  Score=41.11  Aligned_cols=53  Identities=26%  Similarity=0.373  Sum_probs=38.0

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEE--eC-CC--cEEEcCEEEEec
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVT--CA-DG--TQYSADRILITV  103 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~--~~-~g--~~~~ad~VI~t~  103 (147)
                      ..+.+.+.+.+...     |.++++|+.|.+|.. .+++++|+  .. +|  ++++||.|++|.
T Consensus        66 ~~~~~~l~~~l~~~-----GI~i~~~~~v~~i~~-~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          66 AEIRKQFQRSLEKQ-----GMKFKLKTKVVGVDT-SGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             HHHHHHHHHHHHHS-----SCCEECSEEEEEEEC-SSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             hcchhhhhhhhhcc-----cceEEcCCceEEEEE-ccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence            45566666666544     469999999999998 66776554  33 33  458999999874

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.15  E-value=0.003  Score=40.70  Aligned_cols=52  Identities=21%  Similarity=0.268  Sum_probs=35.0

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCc--EEEEeCCC-----cEEEcCEEEEe
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKG--VVVTCADG-----TQYSADRILIT  102 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~--v~v~~~~g-----~~~~ad~VI~t  102 (147)
                      ..+.+.+.+.+...     |.++++|+.|++|.. .+++  +.+++.++     ++++||.|++|
T Consensus        64 ~ei~~~l~~~l~~~-----GV~i~~~~~v~~v~~-~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          64 GEVAKATQKFLKKQ-----GLDFKLSTKVISAKR-NDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEECSEEEEEEEE-ETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             hhhHHHHHHHHHhc-----cceEEeCCEEEEEEE-eCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            34555555555433     469999999999988 4444  44554433     47899999986

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=96.09  E-value=0.0084  Score=44.30  Aligned_cols=55  Identities=9%  Similarity=0.181  Sum_probs=41.7

Q ss_pred             HHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecC-CCcEEEEeCCCcEEEcCEEEEecC
Q psy13542         44 YGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWED-PKGVVVTCADGTQYSADRILITVS  104 (147)
Q Consensus        44 ~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~-~~~v~v~~~~g~~~~ad~VI~t~P  104 (147)
                      +..-++.++++..-      ...|++|++|+++.+++ .+.++|++.++++++||.||+|+-
T Consensus        87 ~~~Yl~~~a~~~~L------~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG  142 (298)
T d1w4xa1          87 ILRYINFVADKFDL------RSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASG  142 (298)
T ss_dssp             HHHHHHHHHHHTTG------GGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCC
T ss_pred             HHHHHHHHHHHcCC------cccccCCcEEEEEEEecCCCceeeccccccccccceEEEeec
Confidence            34445555665532      23799999999999733 356999999999999999999985

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=95.89  E-value=0.0062  Score=43.35  Aligned_cols=58  Identities=17%  Similarity=0.350  Sum_probs=42.0

Q ss_pred             cCCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCc----EEEEeCCCcEEEcCEEEEecC
Q psy13542         40 KKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKG----VVVTCADGTQYSADRILITVS  104 (147)
Q Consensus        40 ~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~----v~v~~~~g~~~~ad~VI~t~P  104 (147)
                      ....-..+.+.|.+.+...     |.+|+++++|+.|.. .+++    +.+ ..++++++||+||+|+-
T Consensus       104 ~~~~a~~i~~~L~~~~~~~-----gV~i~~~~~V~~i~~-~~~~~~v~~~~-~~~~~~~~a~~VIiAtG  165 (253)
T d2gqfa1         104 CDEGAEQIVEMLKSECDKY-----GAKILLRSEVSQVER-IQNDEKVRFVL-QVNSTQWQCKNLIVATG  165 (253)
T ss_dssp             ETTCTHHHHHHHHHHHHHH-----TCEEECSCCEEEEEE-CCSCSSCCEEE-EETTEEEEESEEEECCC
T ss_pred             cccchhHHHHHHHHHHHHc-----CCCeecCceEEEEEe-ecCCceeEEEE-ecCCEEEEeCEEEEcCC
Confidence            3455677888877776533     459999999999988 4332    333 34566899999999975

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.62  E-value=0.0066  Score=38.50  Aligned_cols=53  Identities=15%  Similarity=0.211  Sum_probs=34.6

Q ss_pred             HHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEE----EeCCCcEEEcCEEEEec
Q psy13542         46 NVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVV----TCADGTQYSADRILITV  103 (147)
Q Consensus        46 ~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v----~~~~g~~~~ad~VI~t~  103 (147)
                      .+.+.+.+.+...     |.++++++.|++|..+.++.+..    +..+++++.||.||+|+
T Consensus        64 ~~~~~~~~~l~~~-----gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~  120 (121)
T d1mo9a2          64 ETRAYVLDRMKEQ-----GMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGL  120 (121)
T ss_dssp             HHHHHHHHHHHHT-----TCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECC
T ss_pred             chhhhhhhhhhcc-----ccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEE
Confidence            3444444444433     34899999999999833333321    22345779999999986

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.0074  Score=42.19  Aligned_cols=38  Identities=24%  Similarity=0.386  Sum_probs=32.5

Q ss_pred             cceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecC
Q psy13542         64 SKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVS  104 (147)
Q Consensus        64 g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P  104 (147)
                      |.++++++.|++|+. ++.  +|++++|+++.+|.+|+|+.
T Consensus        97 gI~~~~g~~V~~id~-~~~--~V~l~dG~~i~~d~lViAtG  134 (213)
T d1m6ia1          97 GVAVLTGKKVVQLDV-RDN--MVKLNDGSQITYEKCLIATG  134 (213)
T ss_dssp             EEEEEETCCEEEEEG-GGT--EEEETTSCEEEEEEEEECCC
T ss_pred             CeEEEeCCEEEEeec-cCc--eeeeccceeeccceEEEeee
Confidence            568999999999987 444  46788999999999999975

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.32  E-value=0.0028  Score=40.31  Aligned_cols=51  Identities=16%  Similarity=0.178  Sum_probs=33.6

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCC--CcEEEcCEEEEec
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCAD--GTQYSADRILITV  103 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~--g~~~~ad~VI~t~  103 (147)
                      ..+.+.+.+.+...     |.+++++++|+++..   +...+...+  ++++.||.||+|+
T Consensus        62 ~~~~~~l~~~l~~~-----gV~i~~~~~V~~i~~---~~~~~~~~~~~~~~i~~D~vi~A~  114 (115)
T d1lvla2          62 SELTAPVAESLKKL-----GIALHLGHSVEGYEN---GCLLANDGKGGQLRLEADRVLVAV  114 (115)
T ss_dssp             HHHHHHHHHHHHHH-----TCEEETTCEEEEEET---TEEEEECSSSCCCEECCSCEEECC
T ss_pred             chhHHHHHHHHHhh-----cceEEcCcEEEEEcC---CeEEEEEcCCCeEEEEcCEEEEec
Confidence            34455555555433     459999999999964   233333333  3579999999986

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=95.30  E-value=0.028  Score=39.25  Aligned_cols=56  Identities=16%  Similarity=0.223  Sum_probs=45.2

Q ss_pred             cHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecChh
Q psy13542         43 GYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVSLG  106 (147)
Q Consensus        43 G~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P~~  106 (147)
                      ....+...+......       ..+++++.|+.|.. .+++++|++.||+++++|.+|.|....
T Consensus        96 ~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~-~~~~v~v~~~dG~~~~~d~~v~adG~~  151 (265)
T d2voua1          96 SYDSIYGGLYELFGP-------ERYHTSKCLVGLSQ-DSETVQMRFSDGTKAEANWVIGADGGA  151 (265)
T ss_dssp             EHHHHHHHHHHHHCS-------TTEETTCCEEEEEE-CSSCEEEEETTSCEEEESEEEECCCTT
T ss_pred             hhHHHHHHHHHhccc-------ceeecCcEEEEEEe-eCCceEEEECCCCEEEEEEEecccccc
Confidence            455555555555553       38999999999998 888999999999999999999988644

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.72  E-value=0.018  Score=36.91  Aligned_cols=53  Identities=13%  Similarity=0.169  Sum_probs=37.2

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEe---CCC------cEEEcCEEEEec
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTC---ADG------TQYSADRILITV  103 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~---~~g------~~~~ad~VI~t~  103 (147)
                      ..+.+.+.+.+.+.     |.++++|+.|++|.. .++++.++.   .+|      ....||.||+|+
T Consensus        63 ~~~~~~~~~~l~~~-----Gv~i~~~~~v~~i~~-~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~  124 (125)
T d3grsa2          63 SMISTNCTEELENA-----GVEVLKFSQVKEVKK-TLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAI  124 (125)
T ss_dssp             HHHHHHHHHHHHHT-----TCEEETTEEEEEEEE-ETTEEEEEEEECCTTSCCEEEEEEEESEEEECS
T ss_pred             hHHHHHHHHHHHHC-----CCEEEeCCEEEEEEE-cCCeEEEEEEEccCCcCcCccccccCCEEEEEe
Confidence            44555555555443     469999999999998 667766543   333      246899999986

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.45  E-value=0.048  Score=43.10  Aligned_cols=66  Identities=12%  Similarity=0.109  Sum_probs=49.8

Q ss_pred             CCceeeecCCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecC-CCcE-EEEeCCCcEEEcCEEEEec
Q psy13542         33 GCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWED-PKGV-VVTCADGTQYSADRILITV  103 (147)
Q Consensus        33 g~~~~~~~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~-~~~v-~v~~~~g~~~~ad~VI~t~  103 (147)
                      |..-+-|...|.+.|++++++...-.     |+...|+++|..|..+. ++.+ .|...+|+++.+++||+.-
T Consensus       364 G~spflyp~YG~gEipQ~FcR~~AV~-----Gg~Y~L~~~i~~i~~d~e~~~~~~v~~~~g~~i~~k~vI~~p  431 (491)
T d1vg0a1         364 GNTPFLFPLYGQGELPQCFCRMCAVF-----GGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIED  431 (491)
T ss_dssp             SSSSEEEETTCTTHHHHHHHHHHHHT-----TCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEG
T ss_pred             CCCCeEeecCCcchHHHHHHHHHHhc-----CcEEEcCCccceEEEecCCCeEEEEEccCCcEEecCeEEECH
Confidence            33334457888999999998776432     56999999999998742 3334 5677889999999999873

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=92.27  E-value=0.092  Score=34.92  Aligned_cols=38  Identities=13%  Similarity=0.203  Sum_probs=31.1

Q ss_pred             cceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecC
Q psy13542         64 SKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVS  104 (147)
Q Consensus        64 g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P  104 (147)
                      +.++++++.|++|.. ..  ..+++.+|+++.+|.+|+|+-
T Consensus        69 ~i~~~~~~~v~~i~~-~~--~~~~~~~g~~~~~D~vi~a~G  106 (183)
T d1d7ya1          69 EVEWLLGVTAQSFDP-QA--HTVALSDGRTLPYGTLVLATG  106 (183)
T ss_dssp             TCEEEETCCEEEEET-TT--TEEEETTSCEEECSEEEECCC
T ss_pred             CeEEEEecccccccc-cc--ceeEecCCcEeeeeeEEEEEE
Confidence            358999999999986 43  346678999999999999974

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.22  E-value=0.061  Score=34.02  Aligned_cols=48  Identities=13%  Similarity=0.225  Sum_probs=33.0

Q ss_pred             HHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecC
Q psy13542         46 NVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVS  104 (147)
Q Consensus        46 ~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P  104 (147)
                      .+.+.+.+.+...     |.++++|+.|.++..   +++   ..+++.+.+|.||+|+-
T Consensus        73 ~~~~~~~~~l~~~-----GV~~~~~~~v~~~~~---~~v---~~~~~~i~~D~vi~a~G  120 (122)
T d1xhca2          73 ELSNMIKDMLEET-----GVKFFLNSELLEANE---EGV---LTNSGFIEGKVKICAIG  120 (122)
T ss_dssp             HHHHHHHHHHHHT-----TEEEECSCCEEEECS---SEE---EETTEEEECSCEEEECC
T ss_pred             HHHHHHHHHHHHC-----CcEEEeCCEEEEEeC---CEE---EeCCCEEECCEEEEEEE
Confidence            3444444445433     469999999999865   332   23667899999999973

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.80  E-value=0.098  Score=33.16  Aligned_cols=54  Identities=19%  Similarity=0.219  Sum_probs=35.8

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecC---CCcEEEEeCCC---c--EEEcCEEEEec
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWED---PKGVVVTCADG---T--QYSADRILITV  103 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~---~~~v~v~~~~g---~--~~~ad~VI~t~  103 (147)
                      ..+.+.+.+.+...     |.++++|+.|+++....   +..+.++..++   +  ...+|.|++|+
T Consensus        60 ~~~~~~l~~~l~~~-----Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~Ai  121 (122)
T d1h6va2          60 QDMANKIGEHMEEH-----GIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAV  121 (122)
T ss_dssp             HHHHHHHHHHHHHT-----TEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCC
T ss_pred             HHHHHHHHHHHHHC-----CCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEe
Confidence            44666666666554     56999999999997622   23355554332   2  35789999886

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=91.71  E-value=0.16  Score=36.70  Aligned_cols=57  Identities=18%  Similarity=0.157  Sum_probs=39.5

Q ss_pred             cHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCc---EEEEeCCC--cEEEcCEEEEecC
Q psy13542         43 GYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKG---VVVTCADG--TQYSADRILITVS  104 (147)
Q Consensus        43 G~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~---v~v~~~~g--~~~~ad~VI~t~P  104 (147)
                      .-..+.+.|.+.+...     |.+|+++++|+++..+.+++   +.+...++  ..+.||.||+|+-
T Consensus       150 ~~~~~~~~l~~~a~~~-----gv~i~~~t~v~~li~d~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtG  211 (322)
T d1d4ca2         150 VGAHVAQVLWDNAVKR-----GTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAG  211 (322)
T ss_dssp             SHHHHHHHHHHHHHHT-----TCEEETTEEEEEEECCSSSCCCEEEEEETTTEEEEEECSEEEECCC
T ss_pred             hhHHHHHHHHHHHHhc-----CceEEEeeecccccccccccccceEEEeecccEEEEeCCeEEEcCC
Confidence            3456777777666543     46999999999998733443   44544444  2589999999974

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=91.16  E-value=0.2  Score=35.84  Aligned_cols=57  Identities=14%  Similarity=0.122  Sum_probs=38.6

Q ss_pred             cHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcE---EEEeCCC--cEEEcCEEEEecC
Q psy13542         43 GYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGV---VVTCADG--TQYSADRILITVS  104 (147)
Q Consensus        43 G~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v---~v~~~~g--~~~~ad~VI~t~P  104 (147)
                      ....+.+.+.+.+...     |..|+++++|+++..+++++|   .+...++  .++.||.||+|+-
T Consensus       143 ~~~~~~~~l~~~a~~~-----gv~i~~~~~v~~li~~~~G~V~Gv~~~~~~~~~~~i~Ak~VVlAtG  204 (308)
T d1y0pa2         143 VGAHVVQVLYDNAVKR-----NIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATG  204 (308)
T ss_dssp             HHHHHHHHHHHHHHHT-----TCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCC
T ss_pred             hHHHHHHHHHHHHHhc-----cceEEEeeccchhhhhcccccccccccccccceeEeecCeEEEccC
Confidence            3455777776666433     469999999999877344443   3444444  3589999999985

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=88.78  E-value=0.28  Score=35.39  Aligned_cols=55  Identities=20%  Similarity=0.216  Sum_probs=38.7

Q ss_pred             HHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCCCcE---EEEeCCCc--EEEcCEEEEecC
Q psy13542         45 GNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDPKGV---VVTCADGT--QYSADRILITVS  104 (147)
Q Consensus        45 ~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~~~v---~v~~~~g~--~~~ad~VI~t~P  104 (147)
                      ..+++.|.+.+...     |..++++++|+++..+++++|   .+...+++  .+.|+.||+|+-
T Consensus       148 ~~i~~~L~~~~~~~-----g~~i~~~~~v~~l~~~~~g~V~Gv~~~~~~~~~~~i~Ak~VVlAtG  207 (317)
T d1qo8a2         148 PEIIDTLRKAAKEQ-----GIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATG  207 (317)
T ss_dssp             HHHHHHHHHHHHHT-----TCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCC
T ss_pred             hhhhHHHHHHhhhc-----cceeeeccchhheeecccccceeeEeecccceEEEEeccceEEecc
Confidence            34777787766543     458999999999876344443   44455553  478999999985

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=87.85  E-value=0.43  Score=31.87  Aligned_cols=39  Identities=21%  Similarity=0.277  Sum_probs=31.4

Q ss_pred             ceEEcCCceEEEEecCCCcEEEEe-CCCc--EEEcCEEEEecC
Q psy13542         65 KKLLLKKEVTKINWEDPKGVVVTC-ADGT--QYSADRILITVS  104 (147)
Q Consensus        65 ~~i~l~~~V~~I~~~~~~~v~v~~-~~g~--~~~ad~VI~t~P  104 (147)
                      .++++++.|++|+. +++.+++.. .+|+  ++.+|.+|+++-
T Consensus        71 i~v~~~~~V~~i~~-~~~~v~~~~~~~g~~~~~~~D~li~a~G  112 (198)
T d1nhpa1          71 VNVFSNTEITAIQP-KEHQVTVKDLVSGEERVENYDKLIISPG  112 (198)
T ss_dssp             CEEEETEEEEEEET-TTTEEEEEETTTCCEEEEECSEEEECCC
T ss_pred             cEEEEeeceeeEee-ccccceeeecccccccccccceeeEeec
Confidence            48999999999998 777787764 4553  468999999984

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=87.24  E-value=0.21  Score=36.44  Aligned_cols=80  Identities=15%  Similarity=0.050  Sum_probs=52.8

Q ss_pred             ccccCCCChhccccccccccccC-C------CCceeeecCCcHHHHHHHHHhhCCCCCCCCCcceEEcCCceEEEEecCC
Q psy13542          9 NTYDGSENWFETSARGLDSFTDL-E------GCFGVVWKKGGYGNVFKLLMKQMPGQTPIDLSKKLLLKKEVTKINWEDP   81 (147)
Q Consensus         9 ~~~~~g~~~~~~S~~~~~~~~~~-~------g~~~~~~~~gG~~~l~~~l~~~l~~~~~~~~g~~i~l~~~V~~I~~~~~   81 (147)
                      ....||.+++++|+..+...... .      ..-+..+.++|+.++++.|.+.-.        .+|.+++.+.       
T Consensus       155 t~K~Wg~~~~~L~~~~~~r~p~r~~~d~~yf~d~~q~~Pk~Gyt~~~e~mL~~~~--------i~v~ln~~~~-------  219 (314)
T d2bi7a1         155 TIKQWGMQPSELPASILKRLPVRFNYDDNYFNHKFQGMPKCGYTQMIKSILNHEN--------IKVDLQREFI-------  219 (314)
T ss_dssp             HHHHHSSCGGGSBGGGCCSCCCCSSSCCCSCCCSEEEEETTHHHHHHHHHHCSTT--------EEEEESCCCC-------
T ss_pred             hhhhhccCCcccchhhhhccceeccccccccchhhheeecccHHHHHHHHHhCCC--------Ceeecccccc-------
Confidence            34467889999998776543221 1      111123479999999999976432        3677776532       


Q ss_pred             CcEEEEeCCCcEEEcCEEEEecChhHHhhC
Q psy13542         82 KGVVVTCADGTQYSADRILITVSLGVLKSN  111 (147)
Q Consensus        82 ~~v~v~~~~g~~~~ad~VI~t~P~~~l~~~  111 (147)
                              +++...+|+||.|.|+..+=.-
T Consensus       220 --------~~~~~~~d~vI~TgpiD~~f~~  241 (314)
T d2bi7a1         220 --------VEERTHYDHVFYSGPLDAFYGY  241 (314)
T ss_dssp             --------GGGGGGSSEEEECSCHHHHTTT
T ss_pred             --------ccccccceeEEEeccHHHHhcc
Confidence                    1233458999999999988655

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.68  E-value=0.27  Score=31.78  Aligned_cols=36  Identities=14%  Similarity=0.224  Sum_probs=27.2

Q ss_pred             ceEEcCCceEEEEecCCCcEEEEeCCCcEEEcCEEEEecC
Q psy13542         65 KKLLLKKEVTKINWEDPKGVVVTCADGTQYSADRILITVS  104 (147)
Q Consensus        65 ~~i~l~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~P  104 (147)
                      .++++++.|++|+. .. .  +.+.+++++.+|.+|+|+.
T Consensus        67 v~~~~~~~v~~i~~-~~-~--~~~~~~~~i~~D~li~a~G  102 (167)
T d1xhca1          67 IEIRLAEEAKLIDR-GR-K--VVITEKGEVPYDTLVLATG  102 (167)
T ss_dssp             EEEECSCCEEEEET-TT-T--EEEESSCEEECSEEEECCC
T ss_pred             ceeeeecccccccc-cc-c--cccccccccccceeEEEEE
Confidence            47999999999975 32 2  2334566899999999984

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=84.35  E-value=1.4  Score=30.92  Aligned_cols=44  Identities=14%  Similarity=0.151  Sum_probs=32.0

Q ss_pred             eEEcCCceEEEEecCCCcE-EEEeCCCcEEEcCEEEEecChhHHhhC
Q psy13542         66 KLLLKKEVTKINWEDPKGV-VVTCADGTQYSADRILITVSLGVLKSN  111 (147)
Q Consensus        66 ~i~l~~~V~~I~~~~~~~v-~v~~~~g~~~~ad~VI~t~P~~~l~~~  111 (147)
                      .|+ ...|..+.. .++++ .|.+.+|..+.|+.||+|+-.-+=..+
T Consensus        84 ~i~-q~~V~dli~-e~~~v~gV~t~~G~~~~AkaVILtTGTFL~G~i  128 (230)
T d2cula1          84 HLF-QATATGLLL-EGNRVVGVRTWEGPPARGEKVVLAVGSFLGARL  128 (230)
T ss_dssp             EEE-ECCEEEEEE-ETTEEEEEEETTSCCEECSEEEECCTTCSSCEE
T ss_pred             HHH-hccceeeEe-cccceeeEEeccccEEEEeEEEEccCcceeeEE
Confidence            444 456777776 45554 689999999999999999976544333

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.68  E-value=0.71  Score=29.71  Aligned_cols=37  Identities=19%  Similarity=0.246  Sum_probs=26.8

Q ss_pred             ceEEcCCceEEEEecCCCcEEEEeCCC-cEEEcCEEEEecC
Q psy13542         65 KKLLLKKEVTKINWEDPKGVVVTCADG-TQYSADRILITVS  104 (147)
Q Consensus        65 ~~i~l~~~V~~I~~~~~~~v~v~~~~g-~~~~ad~VI~t~P  104 (147)
                      .++..++.|.+|..   +++.+...+. +++.||.||+|+-
T Consensus       123 v~~~~~~~v~~i~~---~gv~~~~~g~e~~i~aD~Vv~A~G  160 (162)
T d1ps9a2         123 VKMIPGVSYQKIDD---DGLHVVINGETQVLAVDNVVICAG  160 (162)
T ss_dssp             CEEECSCEEEEEET---TEEEEEETTEEEEECCSEEEECCC
T ss_pred             eEEEeeeEEEEEcC---CCCEEecCCeEEEEECCEEEECCC
Confidence            48999999999964   4555544322 3578999999973

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=83.58  E-value=0.7  Score=33.64  Aligned_cols=39  Identities=23%  Similarity=0.330  Sum_probs=27.6

Q ss_pred             eEEcCCceEEEEecCCCc--EEEEeC--CC-----cEEEcCEEEEecC
Q psy13542         66 KLLLKKEVTKINWEDPKG--VVVTCA--DG-----TQYSADRILITVS  104 (147)
Q Consensus        66 ~i~l~~~V~~I~~~~~~~--v~v~~~--~g-----~~~~ad~VI~t~P  104 (147)
                      +|+++++|++|..+.++.  |.+...  ++     ++++||.||++.-
T Consensus       239 ~i~t~~~V~~I~~~~~~~~~V~v~~~~~~~~~~~~~~~~A~~VILaAG  286 (370)
T d3coxa1         239 TITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAG  286 (370)
T ss_dssp             EEECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEEEEEECSH
T ss_pred             EEEecCcEEEEEEcCCCeEEEEEEEeCCccceeeEEEEECCEEEEeeC
Confidence            899999999999844443  333322  22     3588999999874

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=81.70  E-value=0.89  Score=32.95  Aligned_cols=39  Identities=18%  Similarity=0.291  Sum_probs=27.9

Q ss_pred             eEEcCCceEEEEecCCCc--EEEEe--CCC-----cEEEcCEEEEecC
Q psy13542         66 KLLLKKEVTKINWEDPKG--VVVTC--ADG-----TQYSADRILITVS  104 (147)
Q Consensus        66 ~i~l~~~V~~I~~~~~~~--v~v~~--~~g-----~~~~ad~VI~t~P  104 (147)
                      +|++++.|++|..+.++.  +.|..  .++     ++++||.||++.-
T Consensus       235 ~i~~~t~V~~I~~~~~g~~~v~v~~~~~~~~~~~~~~i~Ak~VVLaAG  282 (367)
T d1n4wa1         235 TIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAG  282 (367)
T ss_dssp             EEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEECSH
T ss_pred             EEECCCEEEEEEEcCCCCEEEEEEEECCCCcceeEEEEecCEEEEecc
Confidence            899999999999833433  33333  233     3688999999984

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.78  E-value=1.4  Score=30.02  Aligned_cols=40  Identities=18%  Similarity=0.175  Sum_probs=33.1

Q ss_pred             eEEcCCceEEEEecCCCcEEEEeCCC----cEEEcCEEEEecChh
Q psy13542         66 KLLLKKEVTKINWEDPKGVVVTCADG----TQYSADRILITVSLG  106 (147)
Q Consensus        66 ~i~l~~~V~~I~~~~~~~v~v~~~~g----~~~~ad~VI~t~P~~  106 (147)
                      .+.+++.|+.+.. .++++.|++.+|    +++.+|.+|.|--..
T Consensus       122 ~~~~~~~v~~~~~-~~~~v~v~~~~g~~~~~~~~ad~vi~ADG~~  165 (288)
T d3c96a1         122 AVRTGLGVERIEE-RDGRVLIGARDGHGKPQALGADVLVGADGIH  165 (288)
T ss_dssp             SEEESEEEEEEEE-ETTEEEEEEEETTSCEEEEEESEEEECCCTT
T ss_pred             eeecCcEEEEeee-cCCcEEEEEEcCCCCeEEEeeceeeccCCcc
Confidence            7999999999998 778888887665    479999999886543