Psyllid ID: psy13561

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MALSNDYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRLSWTTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKFAPDPVP
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
malsndyfqcgwNIFDLIVVTASLVDLMTEFVDGLSVLRGLRLSWTTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMqlfskdytsekfapdpvp
Flexible Loop (DISEMBL)
MALSNDYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRLSWTTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSkdytsekfapdpvp
Low Complexity Region (SEG)
MALSNDYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRLSWTTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKFAPDPVP
Disordered region (IsUnstruct)
*****DYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRLSWTTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY***********
Disordered Region (DISOPRED)
*ALSNDYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRLSWTTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKFAPD**P
Disordered Region (DISEMBL)
MALSNDYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRLSWTTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTS*********
Disordered Region (DISPRO)
MALSNDYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRLSWTTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKFAP****
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALSNDYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRLSWTTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKFAPDPVP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	99	2.2.26 [Sep-21-2011]
Q9W0Y8	2821	Sodium channel protein 60	yes	N/A	1.0	0.035	0.794	2e-37
Q20JQ7	1784	Sodium channel protein ty	yes	N/A	0.838	0.046	0.593	2e-22
Q62205	1984	Sodium channel protein ty	yes	N/A	0.858	0.042	0.548	2e-21
Q15858	1988	Sodium channel protein ty	yes	N/A	0.858	0.042	0.548	2e-21
Q2XVR5	1863	Sodium channel protein ty	N/A	N/A	0.828	0.044	0.588	2e-21
O08562	1984	Sodium channel protein ty	yes	N/A	0.858	0.042	0.537	3e-21
Q2XVR4	1715	Sodium channel protein ty	N/A	N/A	0.828	0.047	0.577	3e-21
P35499	1836	Sodium channel protein ty	no	N/A	0.858	0.046	0.559	4e-21
Q2XVR6	1719	Sodium channel protein ty	N/A	N/A	0.828	0.047	0.577	4e-21
Q05973	1522	Sodium channel protein 1	N/A	N/A	1.0	0.065	0.542	6e-21

>sp|Q9W0Y8|SCN60_DROME Sodium channel protein 60E OS=Drosophila melanogaster GN=NaCP60E PE=2 SV=5

 Score =  154 bits (388), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 85/107 (79%), Positives = 92/107 (85%), Gaps = 8/107 (7%)

Query: 1   MALSNDYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLL 52
           MALS D+F CGWNIFDL++VTASL+D++ E VDGLSVLRGLRL        SWTTMKVLL
Sbjct: 740 MALSKDFFLCGWNIFDLLIVTASLLDIIFELVDGLSVLRGLRLLRVLKLAQSWTTMKVLL 799

Query: 53  SIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKFAPDPVP 99
           SIIISTIGALGNLT +LVIVIYIFAVIGMQLFSKDYT EKF PDPVP
Sbjct: 800 SIIISTIGALGNLTLILVIVIYIFAVIGMQLFSKDYTPEKFDPDPVP 846

Mediates the voltage-dependent sodium ion permeability of excitable membranes. Plays a role in processing of olfactory information during the olfactory avoidance response.
Drosophila melanogaster (taxid: 7227)

>sp|Q20JQ7|SC4AB_DANRE Sodium channel protein type 4 subunit alpha B OS=Danio rerio GN=scn4ab PE=2 SV=1

 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 54/91 (59%), Positives = 67/91 (73%), Gaps = 8/91 (8%)

Query: 7   YFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIST 58
           YFQ GWNIFD I+VT SLV+LM   V+GLSVLR  RL        SW T+ +L+ II ++
Sbjct: 627 YFQVGWNIFDSIIVTMSLVELMLADVEGLSVLRSFRLMRVFKLAKSWPTLNMLIKIIGNS 686

Query: 59  IGALGNLTFVLVIVIYIFAVIGMQLFSKDYT 89
           +GALGNLT VL I+++IFAV+GMQLF K YT
Sbjct: 687 VGALGNLTLVLAIIVFIFAVVGMQLFGKSYT 717

This protein mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. This sodium channel may be present in both denervated and innervated skeletal muscle.

Danio rerio (taxid: 7955)

>sp|Q62205|SCN9A_MOUSE Sodium channel protein type 9 subunit alpha OS=Mus musculus GN=Scn9a PE=1 SV=2

 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/93 (54%), Positives = 66/93 (70%), Gaps = 8/93 (8%)

Query: 6   DYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIS 57
           +YFQ GWNIFD ++VT SLV+L    V+GLSVLR  RL        SW T+ +L+ II +
Sbjct: 801 EYFQVGWNIFDSLIVTLSLVELFLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGN 860

Query: 58  TIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTS 90
           ++GALGNLT VL I+++IFAV+GMQLF K Y  
Sbjct: 861 SVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKE 893

Plays a role in pain mechanisms, especially in the development of inflammatory pain.

Mus musculus (taxid: 10090)

>sp|Q15858|SCN9A_HUMAN Sodium channel protein type 9 subunit alpha OS=Homo sapiens GN=SCN9A PE=1 SV=3

 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/93 (54%), Positives = 66/93 (70%), Gaps = 8/93 (8%)

Query: 6   DYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIS 57
           +YFQ GWNIFD ++VT SLV+L    V+GLSVLR  RL        SW T+ +L+ II +
Sbjct: 802 EYFQVGWNIFDSLIVTLSLVELFLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGN 861

Query: 58  TIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTS 90
           ++GALGNLT VL I+++IFAV+GMQLF K Y  
Sbjct: 862 SVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKE 894

Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. It is a tetrodotoxin-sensitive Na(+) channel isoform. Plays a role in pain mechanisms, especially in the development of inflammatory pain.

Homo sapiens (taxid: 9606)

>sp|Q2XVR5|SC4AA_TETNG Sodium channel protein type 4 subunit alpha A OS=Tetraodon nigroviridis GN=scn4aa PE=3 SV=2

 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 64/90 (71%), Gaps = 8/90 (8%)

Query: 7   YFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIST 58
           YFQ GWNIFD I+VT SLV+L    V GLSVLR  RL        SW T+ +L+ II S+
Sbjct: 651 YFQVGWNIFDSIIVTLSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGSS 710

Query: 59  IGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
           +GALGNLT VL I+++IFAV+GMQLF K Y
Sbjct: 711 VGALGNLTLVLAIIVFIFAVVGMQLFGKSY 740

This protein mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. This sodium channel may be present in both denervated and innervated skeletal muscle.

Tetraodon nigroviridis (taxid: 99883)

>sp|O08562|SCN9A_RAT Sodium channel protein type 9 subunit alpha OS=Rattus norvegicus GN=Scn9a PE=1 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 50/93 (53%), Positives = 66/93 (70%), Gaps = 8/93 (8%)

Query: 6   DYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIS 57
           +YFQ GWNIFD ++VT SL++L    V+GLSVLR  RL        SW T+ +L+ II +
Sbjct: 801 EYFQVGWNIFDSLIVTLSLIELFLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGN 860

Query: 58  TIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTS 90
           ++GALGNLT VL I+++IFAV+GMQLF K Y  
Sbjct: 861 SVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKE 893

Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. It is a tetrodotoxin-sensitive Na(+) channel isoform. Plays a role in pain mechanisms, especially in the development of inflammatory pain.

Rattus norvegicus (taxid: 10116)

>sp|Q2XVR4|SC4AB_TETNG Sodium channel protein type 4 subunit alpha B OS=Tetraodon nigroviridis GN=scn4ab PE=3 SV=1

 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/90 (57%), Positives = 65/90 (72%), Gaps = 8/90 (8%)

Query: 7   YFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIST 58
           YFQ GWNIFD I+VT SLV+L    V GLSVLR  RL        SW T+ +L+ II ++
Sbjct: 574 YFQVGWNIFDSIIVTMSLVELGLANVQGLSVLRSFRLMRVFKLAKSWPTLNMLIKIIGNS 633

Query: 59  IGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
           +GALGNLT VL I+++IFAV+GMQLF K+Y
Sbjct: 634 VGALGNLTLVLAIIVFIFAVVGMQLFGKNY 663

This protein mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. This sodium channel may be present in both denervated and innervated skeletal muscle.

Tetraodon nigroviridis (taxid: 99883)

>sp|P35499|SCN4A_HUMAN Sodium channel protein type 4 subunit alpha OS=Homo sapiens GN=SCN4A PE=1 SV=4

 Score =  100 bits (248), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 52/93 (55%), Positives = 65/93 (69%), Gaps = 8/93 (8%)

Query: 6   DYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIS 57
           +YFQ GWNIFD I+VT SLV+L    V GLSVLR  RL        SW T+ +L+ II +
Sbjct: 636 EYFQQGWNIFDSIIVTLSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGN 695

Query: 58  TIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTS 90
           ++GALGNLT VL I+++IFAV+GMQLF K Y  
Sbjct: 696 SVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKE 728

This protein mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. This sodium channel may be present in both denervated and innervated skeletal muscle.

Homo sapiens (taxid: 9606)

>sp|Q2XVR6|SC4AB_TAKRU Sodium channel protein type 4 subunit alpha B OS=Takifugu rubripes GN=scn4ab PE=3 SV=1

 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 52/90 (57%), Positives = 65/90 (72%), Gaps = 8/90 (8%)

Query: 7   YFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIST 58
           YFQ GWNIFD I+VT SLV+L    V GLSVLR  RL        SW T+ +L+ II ++
Sbjct: 572 YFQVGWNIFDSIIVTISLVELGLANVQGLSVLRSFRLMRVFKLAKSWPTLNMLIKIIGNS 631

Query: 59  IGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
           +GALGNLT VL I+++IFAV+GMQLF K+Y
Sbjct: 632 VGALGNLTLVLAIIVFIFAVVGMQLFGKNY 661

This protein mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. This sodium channel may be present in both denervated and innervated skeletal muscle.

Takifugu rubripes (taxid: 31033)

>sp|Q05973|SCN1_LOLBL Sodium channel protein 1 brain OS=Loligo bleekeri PE=2 SV=1

 Score = 99.4 bits (246), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 58/107 (54%), Positives = 77/107 (71%), Gaps = 8/107 (7%)

Query: 1   MALSNDYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLL 52
           +A +  YF+ GWNI DL+VV ASL+DL  E + G+SV R  RL        SWTTM++LL
Sbjct: 463 LAFNKQYFKSGWNICDLVVVVASLIDLGVEGLKGVSVFRSFRLLRVFHLAQSWTTMRLLL 522

Query: 53  SIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKFAPDPVP 99
            II++T+G+LG LT +L+IVIYIFAV G+QLF  +YT +KF  +PVP
Sbjct: 523 CIILNTLGSLGYLTIILIIVIYIFAVTGLQLFHTEYTPDKFRGEPVP 569

Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.

Loligo bleekeri (taxid: 6617)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
322798471	644	hypothetical protein SINV_04745 [Solenop	1.0	0.153	0.766	1e-39
328793203	2525	PREDICTED: sodium channel protein 60E-li	1.0	0.039	0.766	5e-39
350422941	2532	PREDICTED: sodium channel protein 60E-li	1.0	0.039	0.766	6e-39
307169782	1975	Sodium channel protein 60E [Camponotus f	1.0	0.050	0.775	6e-39
383858043	2443	PREDICTED: LOW QUALITY PROTEIN: sodium c	1.0	0.040	0.766	7e-39
340727515	2535	PREDICTED: sodium channel protein 60E-li	1.0	0.039	0.766	8e-39
380027833	2455	PREDICTED: LOW QUALITY PROTEIN: sodium c	1.0	0.040	0.766	1e-38
307213718	1966	Sodium channel protein 60E [Harpegnathos	1.0	0.050	0.766	2e-38
332030051	2004	Sodium channel protein 60E [Acromyrmex e	1.0	0.049	0.775	2e-37
195401751	1908	GJ18955 [Drosophila virilis] gi|19414248	1.0	0.051	0.803	2e-36

>gi|322798471|gb|EFZ20143.1| hypothetical protein SINV_04745 [Solenopsis invicta]

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 82/107 (76%), Positives = 90/107 (84%), Gaps = 8/107 (7%)

Query: 1   MALSNDYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLL 52
           +ALS D+F  GWN FDLI+V+ASL+DL  E VDGLSV+R LRL        SWTTMKVLL
Sbjct: 253 LALSKDFFNNGWNNFDLIIVSASLIDLTFELVDGLSVIRSLRLLRVLKLAQSWTTMKVLL 312

Query: 53  SIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKFAPDPVP 99
           SIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYT +KF+PDPVP
Sbjct: 313 SIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTPDKFSPDPVP 359

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328793203|ref|XP_395121.4| PREDICTED: sodium channel protein 60E-like [Apis mellifera]

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 82/107 (76%), Positives = 89/107 (83%), Gaps = 8/107 (7%)

Query: 1    MALSNDYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLL 52
            +ALS D+F  GWN FDLI+V+ASL+DL  E VDGLSV+RGLRL        SWTTMKVLL
Sbjct: 1114 LALSKDFFANGWNNFDLIIVSASLIDLTFELVDGLSVIRGLRLLRVLKLAQSWTTMKVLL 1173

Query: 53   SIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKFAPDPVP 99
            SIIISTIGALGNLT VLVIVIYIFAVIGMQLFSKDYT +KF PDPVP
Sbjct: 1174 SIIISTIGALGNLTLVLVIVIYIFAVIGMQLFSKDYTLDKFYPDPVP 1220

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350422941|ref|XP_003493336.1| PREDICTED: sodium channel protein 60E-like [Bombus impatiens]

 Score =  164 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 82/107 (76%), Positives = 89/107 (83%), Gaps = 8/107 (7%)

Query: 1    MALSNDYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLL 52
            +ALS D+F  GWN FDLI+V+ASL+DL  E VDGLSV+RGLRL        SWTTMKVLL
Sbjct: 1124 LALSKDFFANGWNNFDLIIVSASLIDLTFELVDGLSVIRGLRLLRVLKLAQSWTTMKVLL 1183

Query: 53   SIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKFAPDPVP 99
            SIIISTIGALGNLT VLVIVIYIFAVIGMQLFSKDYT +KF PDPVP
Sbjct: 1184 SIIISTIGALGNLTLVLVIVIYIFAVIGMQLFSKDYTLDKFYPDPVP 1230

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307169782|gb|EFN62327.1| Sodium channel protein 60E [Camponotus floridanus]

 Score =  164 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 83/107 (77%), Positives = 90/107 (84%), Gaps = 8/107 (7%)

Query: 1   MALSNDYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLL 52
           +ALS D+F  GWN FDLI+V+ASL+DL  E VDGLSV+RGLRL        SWTTMKVLL
Sbjct: 592 LALSKDFFNNGWNNFDLIIVSASLIDLTFELVDGLSVIRGLRLLRVLKLAQSWTTMKVLL 651

Query: 53  SIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKFAPDPVP 99
           SIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYT +KF PDPVP
Sbjct: 652 SIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTPDKFYPDPVP 698

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858043|ref|XP_003704512.1| PREDICTED: LOW QUALITY PROTEIN: sodium channel protein 60E-like [Megachile rotundata]

 Score =  164 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 82/107 (76%), Positives = 89/107 (83%), Gaps = 8/107 (7%)

Query: 1    MALSNDYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLL 52
            +ALS D+F  GWN FDLI+V+ASL+DL  E VDGLSV+RGLRL        SWTTMKVLL
Sbjct: 1030 LALSKDFFANGWNNFDLIIVSASLIDLTFELVDGLSVIRGLRLLRVLKLAQSWTTMKVLL 1089

Query: 53   SIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKFAPDPVP 99
            SIIISTIGALGNLT VLVIVIYIFAVIGMQLFSKDYT +KF PDPVP
Sbjct: 1090 SIIISTIGALGNLTLVLVIVIYIFAVIGMQLFSKDYTLDKFYPDPVP 1136

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727515|ref|XP_003402087.1| PREDICTED: sodium channel protein 60E-like [Bombus terrestris]

 Score =  164 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 82/107 (76%), Positives = 89/107 (83%), Gaps = 8/107 (7%)

Query: 1    MALSNDYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLL 52
            +ALS D+F  GWN FDLI+V+ASL+DL  E VDGLSV+RGLRL        SWTTMKVLL
Sbjct: 1125 LALSKDFFANGWNNFDLIIVSASLIDLTFELVDGLSVIRGLRLLRVLKLAQSWTTMKVLL 1184

Query: 53   SIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKFAPDPVP 99
            SIIISTIGALGNLT VLVIVIYIFAVIGMQLFSKDYT +KF PDPVP
Sbjct: 1185 SIIISTIGALGNLTLVLVIVIYIFAVIGMQLFSKDYTLDKFYPDPVP 1231

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380027833|ref|XP_003697620.1| PREDICTED: LOW QUALITY PROTEIN: sodium channel protein 60E-like [Apis florea]

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 82/107 (76%), Positives = 89/107 (83%), Gaps = 8/107 (7%)

Query: 1    MALSNDYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLL 52
            +ALS D+F  GWN FDLI+V+ASL+DL  E VDGLSV+RGLRL        SWTTMKVLL
Sbjct: 1086 LALSKDFFANGWNNFDLIIVSASLIDLTFELVDGLSVIRGLRLLRVLKLAQSWTTMKVLL 1145

Query: 53   SIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKFAPDPVP 99
            SIIISTIGALGNLT VLVIVIYIFAVIGMQLFSKDYT +KF PDPVP
Sbjct: 1146 SIIISTIGALGNLTLVLVIVIYIFAVIGMQLFSKDYTLDKFYPDPVP 1192

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307213718|gb|EFN89067.1| Sodium channel protein 60E [Harpegnathos saltator]

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 82/107 (76%), Positives = 90/107 (84%), Gaps = 8/107 (7%)

Query: 1   MALSNDYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLL 52
           +ALS D+F  GWN FDLI+V+ASL+DL  E VDGLSV+RGLRL        SWTTMKVLL
Sbjct: 586 LALSKDFFNNGWNNFDLIIVSASLIDLTFELVDGLSVIRGLRLLRVLKLAQSWTTMKVLL 645

Query: 53  SIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKFAPDPVP 99
           SIIISTIGALGNLTFVLVIVIYIFAVIGMQLF+KDYT +KF PDPVP
Sbjct: 646 SIIISTIGALGNLTFVLVIVIYIFAVIGMQLFNKDYTPDKFYPDPVP 692

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030051|gb|EGI69876.1| Sodium channel protein 60E [Acromyrmex echinatior]

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 83/107 (77%), Positives = 90/107 (84%), Gaps = 8/107 (7%)

Query: 1   MALSNDYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLL 52
           +ALS D+F  GWN FDLI+V+ASL+DL  E VDGLSV+RGLRL        SWTTMKVLL
Sbjct: 642 LALSKDFFNNGWNNFDLIIVSASLIDLTFELVDGLSVIRGLRLLRVLKLAQSWTTMKVLL 701

Query: 53  SIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKFAPDPVP 99
           SIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYT +KF PDPVP
Sbjct: 702 SIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTLDKFYPDPVP 748

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195401751|ref|XP_002059475.1| GJ18955 [Drosophila virilis] gi|194142481|gb|EDW58887.1| GJ18955 [Drosophila virilis]

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 86/107 (80%), Positives = 94/107 (87%), Gaps = 8/107 (7%)

Query: 1   MALSNDYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLL 52
           MALS ++F CGWNIFDLI+VTASL+D++ E VDGLSVLRGLRL        SWTTMKVLL
Sbjct: 609 MALSKEFFLCGWNIFDLIIVTASLLDIIFELVDGLSVLRGLRLLRVLKLAQSWTTMKVLL 668

Query: 53  SIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKFAPDPVP 99
           SIIISTIGALGNLT +LVIVIYIFAVIGMQLFSKDYT+EKFAPDPVP
Sbjct: 669 SIIISTIGALGNLTLILVIVIYIFAVIGMQLFSKDYTAEKFAPDPVP 715

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
FB|FBgn0085434	2821	NaCP60E "Na channel protein 60	1.0	0.035	0.794	6.7e-37
ZFIN|ZDB-GENE-051201-1	1784	scn4ab "sodium channel, voltag	0.838	0.046	0.593	4.3e-21
FB|FBgn0264255	2131	para "paralytic" [Drosophila m	0.929	0.043	0.574	2.3e-20
UNIPROTKB|F1S1Y7	1689	SCN9A "Uncharacterized protein	0.838	0.049	0.560	4.6e-20
UNIPROTKB|J9PB93	1846	SCN9A "Uncharacterized protein	0.838	0.044	0.560	5.2e-20
MGI|MGI:107636	1984	Scn9a "sodium channel, voltage	0.838	0.041	0.560	5.6e-20
UNIPROTKB|Q15858	1988	SCN9A "Sodium channel protein	0.838	0.041	0.560	5.6e-20
UNIPROTKB|E2R0P1	1988	SCN9A "Uncharacterized protein	0.838	0.041	0.560	5.6e-20
UNIPROTKB|E9PBA5	1989	SCN9A "Sodium channel protein	0.838	0.041	0.560	5.6e-20
UNIPROTKB|E9PF08	1989	SCN9A "Sodium channel protein	0.838	0.041	0.560	5.6e-20

FB|FBgn0085434 NaCP60E "Na channel protein 60E" [Drosophila melanogaster (taxid:7227)]

 Score = 414 (150.8 bits), Expect = 6.7e-37, P = 6.7e-37
 Identities = 85/107 (79%), Positives = 92/107 (85%)

Query:     1 MALSNDYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLL 52
             MALS D+F CGWNIFDL++VTASL+D++ E VDGLSVLRGLRL        SWTTMKVLL
Sbjct:   740 MALSKDFFLCGWNIFDLLIVTASLLDIIFELVDGLSVLRGLRLLRVLKLAQSWTTMKVLL 799

Query:    53 SIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEKFAPDPVP 99
             SIIISTIGALGNLT +LVIVIYIFAVIGMQLFSKDYT EKF PDPVP
Sbjct:   800 SIIISTIGALGNLTLILVIVIYIFAVIGMQLFSKDYTPEKFDPDPVP 846

GO:0042048 "olfactory behavior" evidence=IMP

GO:0005248 "voltage-gated sodium channel activity" evidence=ISS;NAS

GO:0006814 "sodium ion transport" evidence=IEA;NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0001518 "voltage-gated sodium channel complex" evidence=IEA

GO:0022843 "voltage-gated cation channel activity" evidence=IDA

ZFIN|ZDB-GENE-051201-1 scn4ab "sodium channel, voltage-gated, type IV, alpha, b" [Danio rerio (taxid:7955)]

 Score = 263 (97.6 bits), Expect = 4.3e-21, P = 4.3e-21
 Identities = 54/91 (59%), Positives = 67/91 (73%)

Query:     7 YFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIST 58
             YFQ GWNIFD I+VT SLV+LM   V+GLSVLR  RL        SW T+ +L+ II ++
Sbjct:   627 YFQVGWNIFDSIIVTMSLVELMLADVEGLSVLRSFRLMRVFKLAKSWPTLNMLIKIIGNS 686

Query:    59 IGALGNLTFVLVIVIYIFAVIGMQLFSKDYT 89
             +GALGNLT VL I+++IFAV+GMQLF K YT
Sbjct:   687 VGALGNLTLVLAIIVFIFAVVGMQLFGKSYT 717

GO:0005248 "voltage-gated sodium channel activity" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA

GO:0001518 "voltage-gated sodium channel complex" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0005244 "voltage-gated ion channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005272 "sodium channel activity" evidence=IEA

GO:0034765 "regulation of ion transmembrane transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

FB|FBgn0264255 para "paralytic" [Drosophila melanogaster (taxid:7227)]

 Score = 257 (95.5 bits), Expect = 2.3e-20, P = 2.3e-20
 Identities = 58/101 (57%), Positives = 71/101 (70%)

Query:     1 MALSNDY-FQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVL 51
             MA+S  Y FQ GWNIFD I+V  SL++L  E V GLSVLR  RL        SW T+ +L
Sbjct:   870 MAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLL 929

Query:    52 LSIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSEK 92
             +SI+  T+GALGNLTFVL I+I+IFAV+GMQLF K+Y   K
Sbjct:   930 ISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDHK 970

GO:0007268 "synaptic transmission" evidence=TAS

GO:0007638 "mechanosensory behavior" evidence=IMP

GO:0009612 "response to mechanical stimulus" evidence=IGI;IMP

GO:0006814 "sodium ion transport" evidence=NAS;IDA

GO:0005248 "voltage-gated sodium channel activity" evidence=ISS;NAS;IDA

GO:0005887 "integral to plasma membrane" evidence=NAS;IDA

GO:0046684 "response to pyrethroid" evidence=NAS;IMP

GO:0046680 "response to DDT" evidence=IDA;NAS;IMP

GO:0045433 "male courtship behavior, veined wing generated song production" evidence=NAS;IMP

GO:0001518 "voltage-gated sodium channel complex" evidence=ISS

GO:0005886 "plasma membrane" evidence=NAS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009987 "cellular process" evidence=IMP

GO:0001666 "response to hypoxia" evidence=IDA

UNIPROTKB|F1S1Y7 SCN9A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 253 (94.1 bits), Expect = 4.6e-20, P = 4.6e-20
 Identities = 51/91 (56%), Positives = 66/91 (72%)

Query:     6 DYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIS 57
             +YFQ GWNIFD ++VT SLV+L    V+GLSVLR  RL        SW T+ +L+ II +
Sbjct:   503 EYFQVGWNIFDSLIVTLSLVELFLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGN 562

Query:    58 TIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
             ++GALGNLT VL I+++IFAV+GMQLF K Y
Sbjct:   563 SVGALGNLTLVLAIIVFIFAVVGMQLFGKSY 593

GO:0048266 "behavioral response to pain" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0009636 "response to toxic substance" evidence=IEA

GO:0006954 "inflammatory response" evidence=IEA

GO:0005248 "voltage-gated sodium channel activity" evidence=IEA

GO:0001518 "voltage-gated sodium channel complex" evidence=IEA

UNIPROTKB|J9PB93 SCN9A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 253 (94.1 bits), Expect = 5.2e-20, P = 5.2e-20
 Identities = 51/91 (56%), Positives = 66/91 (72%)

Query:     6 DYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIS 57
             +YFQ GWNIFD ++VT SLV+L    V+GLSVLR  RL        SW T+ +L+ II +
Sbjct:   661 EYFQVGWNIFDSLIVTLSLVELFLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGN 720

Query:    58 TIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
             ++GALGNLT VL I+++IFAV+GMQLF K Y
Sbjct:   721 SVGALGNLTLVLAIIVFIFAVVGMQLFGKSY 751

GO:0005248 "voltage-gated sodium channel activity" evidence=IEA

GO:0001518 "voltage-gated sodium channel complex" evidence=IEA

MGI|MGI:107636 Scn9a "sodium channel, voltage-gated, type IX, alpha" [Mus musculus (taxid:10090)]

 Score = 253 (94.1 bits), Expect = 5.6e-20, P = 5.6e-20
 Identities = 51/91 (56%), Positives = 66/91 (72%)

Query:     6 DYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIS 57
             +YFQ GWNIFD ++VT SLV+L    V+GLSVLR  RL        SW T+ +L+ II +
Sbjct:   801 EYFQVGWNIFDSLIVTLSLVELFLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGN 860

Query:    58 TIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
             ++GALGNLT VL I+++IFAV+GMQLF K Y
Sbjct:   861 SVGALGNLTLVLAIIVFIFAVVGMQLFGKSY 891

GO:0001518 "voltage-gated sodium channel complex" evidence=ISO

GO:0005216 "ion channel activity" evidence=IEA

GO:0005244 "voltage-gated ion channel activity" evidence=IEA

GO:0005248 "voltage-gated sodium channel activity" evidence=ISO

GO:0005272 "sodium channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA

GO:0006954 "inflammatory response" evidence=IMP

GO:0009636 "response to toxic substance" evidence=IDA

GO:0009791 "post-embryonic development" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019228 "regulation of action potential in neuron" evidence=ISO

GO:0031402 "sodium ion binding" evidence=ISO

GO:0034220 "ion transmembrane transport" evidence=IEA

GO:0034765 "regulation of ion transmembrane transport" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISO

GO:0048266 "behavioral response to pain" evidence=IMP

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|Q15858 SCN9A "Sodium channel protein type 9 subunit alpha" [Homo sapiens (taxid:9606)]

 Score = 253 (94.1 bits), Expect = 5.6e-20, P = 5.6e-20
 Identities = 51/91 (56%), Positives = 66/91 (72%)

Query:     6 DYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIS 57
             +YFQ GWNIFD ++VT SLV+L    V+GLSVLR  RL        SW T+ +L+ II +
Sbjct:   802 EYFQVGWNIFDSLIVTLSLVELFLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGN 861

Query:    58 TIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
             ++GALGNLT VL I+++IFAV+GMQLF K Y
Sbjct:   862 SVGALGNLTLVLAIIVFIFAVVGMQLFGKSY 892

GO:0001518 "voltage-gated sodium channel complex" evidence=IEA

GO:0005248 "voltage-gated sodium channel activity" evidence=IEA

GO:0006954 "inflammatory response" evidence=IEA

GO:0009636 "response to toxic substance" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0019228 "regulation of action potential in neuron" evidence=IEA

GO:0031402 "sodium ion binding" evidence=IEA

GO:0048266 "behavioral response to pain" evidence=IEA

GO:0006814 "sodium ion transport" evidence=TAS

UNIPROTKB|E2R0P1 SCN9A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 253 (94.1 bits), Expect = 5.6e-20, P = 5.6e-20
 Identities = 51/91 (56%), Positives = 66/91 (72%)

Query:     6 DYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIS 57
             +YFQ GWNIFD ++VT SLV+L    V+GLSVLR  RL        SW T+ +L+ II +
Sbjct:   803 EYFQVGWNIFDSLIVTLSLVELFLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGN 862

Query:    58 TIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
             ++GALGNLT VL I+++IFAV+GMQLF K Y
Sbjct:   863 SVGALGNLTLVLAIIVFIFAVVGMQLFGKSY 893

GO:0048266 "behavioral response to pain" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0009636 "response to toxic substance" evidence=IEA

GO:0006954 "inflammatory response" evidence=IEA

GO:0005248 "voltage-gated sodium channel activity" evidence=IEA

GO:0001518 "voltage-gated sodium channel complex" evidence=IEA

UNIPROTKB|E9PBA5 SCN9A "Sodium channel protein type 9 subunit alpha" [Homo sapiens (taxid:9606)]

 Score = 253 (94.1 bits), Expect = 5.6e-20, P = 5.6e-20
 Identities = 51/91 (56%), Positives = 66/91 (72%)

Query:     6 DYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIS 57
             +YFQ GWNIFD ++VT SLV+L    V+GLSVLR  RL        SW T+ +L+ II +
Sbjct:   803 EYFQVGWNIFDSLIVTLSLVELFLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGN 862

Query:    58 TIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
             ++GALGNLT VL I+++IFAV+GMQLF K Y
Sbjct:   863 SVGALGNLTLVLAIIVFIFAVVGMQLFGKSY 893

GO:0001518 "voltage-gated sodium channel complex" evidence=IEA

GO:0005248 "voltage-gated sodium channel activity" evidence=IEA

UNIPROTKB|E9PF08 SCN9A "Sodium channel protein type 9 subunit alpha" [Homo sapiens (taxid:9606)]

 Score = 253 (94.1 bits), Expect = 5.6e-20, P = 5.6e-20
 Identities = 51/91 (56%), Positives = 66/91 (72%)

Query:     6 DYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIS 57
             +YFQ GWNIFD ++VT SLV+L    V+GLSVLR  RL        SW T+ +L+ II +
Sbjct:   803 EYFQVGWNIFDSLIVTLSLVELFLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGN 862

Query:    58 TIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
             ++GALGNLT VL I+++IFAV+GMQLF K Y
Sbjct:   863 SVGALGNLTLVLAIIVFIFAVVGMQLFGKSY 893

GO:0001518 "voltage-gated sodium channel complex" evidence=IEA

GO:0005248 "voltage-gated sodium channel activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q20JQ7	SC4AB_DANRE	No assigned EC number	0.5934	0.8383	0.0465	yes	N/A
Q62205	SCN9A_MOUSE	No assigned EC number	0.5483	0.8585	0.0428	yes	N/A
O08562	SCN9A_RAT	No assigned EC number	0.5376	0.8585	0.0428	yes	N/A
Q15858	SCN9A_HUMAN	No assigned EC number	0.5483	0.8585	0.0427	yes	N/A
Q9W0Y8	SCN60_DROME	No assigned EC number	0.7943	1.0	0.0350	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	99
pfam00520	194	pfam00520, Ion_trans, Ion transport protein	2e-09

>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein

 Score = 51.5 bits (124), Expect = 2e-09
 Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 12/97 (12%)

Query: 7   YFQCGWNIFDLIVVTASLVDLMTEFVDG-------LSVLRGLRL-----SWTTMKVLLSI 54
           YF+  WNI D +VV  SLV L+   +         L +LR LRL      +  ++ LL  
Sbjct: 27  YFRSPWNILDFLVVLPSLVSLILFLLGEDSGLLRVLRLLRLLRLLRLLRRFPGLRTLLQS 86

Query: 55  IISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDYTSE 91
           +  ++ +L NL  +L+++++IFA+IG+QLF  +    
Sbjct: 87  LGRSLKSLLNLLLLLLLLLFIFAIIGVQLFGGELDKC 123

This family contains Sodium, Potassium, Calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not the Pfam family due to it lacking the first four helices. Length = 194

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	99
4dxw_A	229	Crystal Structure Of Navrh, A Voltage-Gated Sodium		4e-05
3rvy_A	285	Crystal Structure Of The Navab Voltage-Gated Sodium		4e-05

>pdb|4DXW|A Chain A, Crystal Structure Of Navrh, A Voltage-Gated Sodium Channel Length = 229

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 6   DYFQCGWNIFDLIVVTASLVDLMTE----FVDGLSVLRGLRL--SWTTMKVLLSIIISTI 59
           D+F+ GWNIFD ++V  SL+ +        +  L + R LRL      +K ++  I+ ++
Sbjct: 71  DFFKSGWNIFDTVIVAISLIPIPNNSSFLVLRLLRIFRVLRLISVIPELKQIIEAILESV 130
Query: 60  GALGNLTFVLVIVIYIFAVIGMQLFSKDYTSE 91
             +  ++ +L I++YI+A +G  LF  D  S 
Sbjct: 131 RRVFFVSLLLFIILYIYATMGAILFGNDDPSR 162

>pdb|3RVY|A Chain A, Crystal Structure Of The Navab Voltage-Gated Sodium Channel (Ile217cys, 2.7 A) Length = 285

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 6   DYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL-----SWTTMKVLLSIIISTIG 60
            +F+  W++FD  VV  SLV   + F + L VLR LRL     +   M+ ++S +IS I 
Sbjct: 88  SFFKDPWSLFDFFVVAISLVPTSSGF-EILRVLRVLRLFRLVTAVPQMRKIVSALISVIP 146
Query: 61  ALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
            + ++  ++ +  YIFA++  QLF + +
Sbjct: 147 GMLSVIALMTLFFYIFAIMATQLFGERF 174

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	99
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	6e-17
4dxw_A	229	Navrh, ION transport protein; tetrameric, voltage-	9e-17

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 3rw0_A* Length = 285

 Score = 72.1 bits (177), Expect = 6e-17
 Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 12/96 (12%)

Query: 1   MALSNDYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLL 52
                 +F+  W++FD  VV  SLV   +    G  +LR LR+        +   M+ ++
Sbjct: 83  YVHRISFFKDPWSLFDFFVVAISLVPTSS----GFEILRVLRVLRLFRLVTAVPQMRKIV 138

Query: 53  SIIISTIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
           S +IS I  + ++  ++ +  YIFA++  QLF + +
Sbjct: 139 SALISVIPGMLSVIALMTLFFYIFAIMATQLFGERF 174

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Length = 229

 Score = 70.8 bits (174), Expect = 9e-17
 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 6   DYFQCGWNIFDLIVVTASLVDLMTEFVDGLSVLRGLRL--------SWTTMKVLLSIIIS 57
           D+F+ GWNIFD ++V  SL+ +         VLR LR+            +K ++  I+ 
Sbjct: 71  DFFKSGWNIFDTVIVAISLIPIPNN--SSFLVLRLLRIFRVLRLISVIPELKQIIEAILE 128

Query: 58  TIGALGNLTFVLVIVIYIFAVIGMQLFSKDY 88
           ++  +  ++ +L I++YI+A +G  LF  D 
Sbjct: 129 SVRRVFFVSLLLFIILYIYATMGAILFGNDD 159

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	99
4dxw_A	229	Navrh, ION transport protein; tetrameric, voltage-	99.7
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	99.63
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	99.09
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	98.86
1ors_C	132	Potassium channel; voltage-dependent, voltage sens	98.48
4f4l_A	112	ION transport protein; alpha helical membrane prot	98.1
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	97.33
2kyh_A	147	KVAP, voltage-gated potassium channel; ION channel	94.52

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}

Probab=99.70  E-value=8.5e-18  Score=116.48  Aligned_cols=89  Identities=30%  Similarity=0.658  Sum_probs=69.0

Q ss_pred             ccchhcCCcchhhhHHHHHhHHHHhh----hhhhhheeeeccc--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13561          5 NDYFQCGWNIFDLIVVTASLVDLMTE----FVDGLSVLRGLRL--SWTTMKVLLSIIISTIGALGNLTFVLVIVIYIFAV   78 (99)
Q Consensus         5 ~~Yf~~~WN~fDf~vv~~s~~~~~~~----~~~~l~~lR~lRl--~~~~~~~l~~~l~~s~p~l~~v~~ll~~~~~ifai   78 (99)
                      ++|++|+||++|+++++.++++....    ..+.+|.+|.+|+  ..+++|.+.+++.++.|++.++.+++++++++||+
T Consensus        70 ~~y~~~~wni~D~~~v~~~~i~~~~~~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa~  149 (229)
T 4dxw_A           70 ADFFKSGWNIFDTVIVAISLIPIPNNSSFLVLRLLRIFRVLRLISVIPELKQIIEAILESVRRVFFVSLLLFIILYIYAT  149 (229)
T ss_dssp             -----CHHHHHHHHHHHHTTCC--------CCTTHHHHHHTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHhcCCcHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999876432    2355666666666  77999999999999999999999999999999999


Q ss_pred             HHHHHhccCCccccCC
Q psy13561         79 IGMQLFSKDYTSEKFA   94 (99)
Q Consensus        79 ~G~~lF~g~~~~~~~~   94 (99)
                      +|+|+|||.. +.+++
T Consensus       150 ~g~~lf~~~~-~~~F~  164 (229)
T 4dxw_A          150 MGAILFGNDD-PSRWG  164 (229)
T ss_dssp             HHHHHTTTTS-CTTTS
T ss_pred             HHHHHhccCC-ccccc
Confidence            9999999874 34443

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*

Probab=99.63  E-value=1.4e-16  Score=113.38  Aligned_cols=87  Identities=32%  Similarity=0.582  Sum_probs=74.6

Q ss_pred             cccccchhcCCcchhhhHHHHHhHHHHh--hhhhhhheeeeccc--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13561          2 ALSNDYFQCGWNIFDLIVVTASLVDLMT--EFVDGLSVLRGLRL--SWTTMKVLLSIIISTIGALGNLTFVLVIVIYIFA   77 (99)
Q Consensus         2 a~~~~Yf~~~WN~fDf~vv~~s~~~~~~--~~~~~l~~lR~lRl--~~~~~~~l~~~l~~s~p~l~~v~~ll~~~~~ifa   77 (99)
                      |.|++|++++||++|+++++.++++...  +.++.+|++|.+|+  ..+++|.+.+++.++.|++.++.+++++++++||
T Consensus        84 ~~~~~y~~~~wn~~Dl~~v~~~~i~~~~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~fa  163 (285)
T 3rvy_A           84 VHRISFFKDPWSLFDFFVVAISLVPTSSGFEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFA  163 (285)
T ss_dssp             TTGGGGGGCHHHHHHHHHHHHHHSCSSSSCTHHHHHGGGGGGHHHHSSTTHHHHHHHHHHHGGGGHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHcCChHHhHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567899999999999999999877532  23455566666666  7899999999999999999999999999999999


Q ss_pred             HHHHHHhccCC
Q psy13561         78 VIGMQLFSKDY   88 (99)
Q Consensus        78 i~G~~lF~g~~   88 (99)
                      ++|+++|++..
T Consensus       164 ~~g~~~f~~~~  174 (285)
T 3rvy_A          164 IMATQLFGERF  174 (285)
T ss_dssp             HHHHHHHTTTC
T ss_pred             HHHHHHhCccc
Confidence            99999999875

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=99.09  E-value=1.8e-10  Score=88.35  Aligned_cols=82  Identities=21%  Similarity=0.336  Sum_probs=65.0

Q ss_pred             ccchhcCCcchhhhHHHHHhHHHHhh--------------hhhhhheeeeccc-----ChhhHHHHHHHHHHHHHHHHHH
Q psy13561          5 NDYFQCGWNIFDLIVVTASLVDLMTE--------------FVDGLSVLRGLRL-----SWTTMKVLLSIIISTIGALGNL   65 (99)
Q Consensus         5 ~~Yf~~~WN~fDf~vv~~s~~~~~~~--------------~~~~l~~lR~lRl-----~~~~~~~l~~~l~~s~p~l~~v   65 (99)
                      .+|++++||++|+++++.+++++...              .++.+|.+|++|+     ..++++.+..++.++++++..+
T Consensus       267 ~~Y~ks~wniiDli~iip~~i~l~~~~~~~~~~~~~~~~~~lrvlRllRvlRilkL~r~~~~l~~l~~tl~~s~~~l~~l  346 (514)
T 2r9r_B          267 AGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLL  346 (514)
T ss_dssp             SSSTTSHHHHHHHHTTHHHHHHHHHHHTSCSHHHHHTTHHHHHHHHHHGGGGGGGGGGSCHHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHhchhHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999998876542              1233444444444     6789999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHhcc
Q psy13561         66 TFVLVIVIYIFAVIGMQLFSK   86 (99)
Q Consensus        66 ~~ll~~~~~ifai~G~~lF~g   86 (99)
                      ++++++.+.+||.++....++
T Consensus       347 l~~l~i~~~if~~~~~~~e~~  367 (514)
T 2r9r_B          347 IFFLFIGVILFSSAVYFAEAD  367 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhhheeecc
Confidence            888888899999988866543

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=98.86  E-value=4.7e-09  Score=76.24  Aligned_cols=81  Identities=14%  Similarity=0.074  Sum_probs=65.4

Q ss_pred             cchhcCCcchhhhHHHHHhHHHHhhh---hhhhheeeeccc--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13561          6 DYFQCGWNIFDLIVVTASLVDLMTEF---VDGLSVLRGLRL--SWTTMKVLLSIIISTIGALGNLTFVLVIVIYIFAVIG   80 (99)
Q Consensus         6 ~Yf~~~WN~fDf~vv~~s~~~~~~~~---~~~l~~lR~lRl--~~~~~~~l~~~l~~s~p~l~~v~~ll~~~~~ifai~G   80 (99)
                      .|++++||++|+++++..+.......   .+.+|++|.+|+  ..++++.+.+++.++.+++..+..+++++++++|.++
T Consensus        68 ~~~~~~~~i~Dl~~i~~p~~~~~~~~~~~~r~lr~~R~lrl~r~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~a~~~  147 (355)
T 3beh_A           68 VRDRTPKIAIDVLAVLVPLAAFLLDGSPDWSLYCAVWLLKPLRDSTFFPVLGRVLANEARNLIGVTTLFGVVLFAVALAA  147 (355)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHSCCSGGGGGGGGGGGSHHHHTCSSHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeccCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58899999999999876665544332   344555555555  6788999999999999999999999999999999999


Q ss_pred             HHHhcc
Q psy13561         81 MQLFSK   86 (99)
Q Consensus        81 ~~lF~g   86 (99)
                      +.+.++
T Consensus       148 ~~~e~~  153 (355)
T 3beh_A          148 YVIERD  153 (355)
T ss_dssp             HHHHTT
T ss_pred             HHhhcC
Confidence            998875

>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1

Probab=98.48  E-value=6.4e-08  Score=62.12  Aligned_cols=57  Identities=14%  Similarity=0.162  Sum_probs=42.3

Q ss_pred             ccchhcCCcchhhhHHHHHhHHHHh----hhhhhhheeeeccc-----ChhhHHHHHHHHHHHHHHHH
Q psy13561          5 NDYFQCGWNIFDLIVVTASLVDLMT----EFVDGLSVLRGLRL-----SWTTMKVLLSIIISTIGALG   63 (99)
Q Consensus         5 ~~Yf~~~WN~fDf~vv~~s~~~~~~----~~~~~l~~lR~lRl-----~~~~~~~l~~~l~~s~p~l~   63 (99)
                      ++|++  ||++|++.++-+.++...    ...+.+|.+|.+|+     ..++++.+.+++.+|.|++.
T Consensus        65 ~~y~~--~niiDllailp~~~~~~~~~~l~~lr~lRllRv~Rvlkl~r~~~~l~~l~~~l~~s~~~l~  130 (132)
T 1ors_C           65 AGYVK--KTLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKLV  130 (132)
T ss_dssp             TTTTT--TCGGGTGGGSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHH--HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence            78999  999999999888777654    22233343333443     67999999999999999864

>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}

Probab=98.10  E-value=1.2e-06  Score=54.81  Aligned_cols=31  Identities=26%  Similarity=0.555  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy13561         58 TIGALGNLTFVLVIVIYIFAVIGMQLFSKDY   88 (99)
Q Consensus        58 s~p~l~~v~~ll~~~~~ifai~G~~lF~g~~   88 (99)
                      |.+.++++.+++++++++||++|+++||+..
T Consensus         2 s~~g~~nv~~ll~l~~~ifAi~G~~lFg~~~   32 (112)
T 4f4l_A            2 SHMGVGSVAALLTVVFYIAAVMATNLYGATF   32 (112)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence            6788999999999999999999999999875

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A

Probab=97.33  E-value=0.00042  Score=47.03  Aligned_cols=77  Identities=9%  Similarity=0.098  Sum_probs=41.9

Q ss_pred             ccchhcCCcchhhhHHHHHhHHHH-------hhhhhhhheeeeccc-----Ch-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13561          5 NDYFQCGWNIFDLIVVTASLVDLM-------TEFVDGLSVLRGLRL-----SW-TTMKVLLSIIISTIGALGNLTFVLVI   71 (99)
Q Consensus         5 ~~Yf~~~WN~fDf~vv~~s~~~~~-------~~~~~~l~~lR~lRl-----~~-~~~~~l~~~l~~s~p~l~~v~~ll~~   71 (99)
                      ++|+++  |++|++.++-......       ....+.+|.+|.+|+     .. +..+.+.+++.+  +++.....++++
T Consensus        67 ~~y~~~--~iiDllailP~~~~~~~~~~~~~~~~lr~lRllRllR~~r~~~~~~~~~~~l~~~~~~--~~l~~~~~~~~~  142 (223)
T 1orq_C           67 AGYVKK--TLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADK--IRFYHLFGAVML  142 (223)
T ss_dssp             HHHHHH--HHHHCTTHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred             HHHHHH--hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence            679998  9999999887765542       112334444444444     12 223333333322  345666666666


Q ss_pred             HHHHHHHHHHHHhcc
Q psy13561         72 VIYIFAVIGMQLFSK   86 (99)
Q Consensus        72 ~~~ifai~G~~lF~g   86 (99)
                      ...++|. ++....+
T Consensus       143 ~~~~~~~-~~~~~e~  156 (223)
T 1orq_C          143 TVLYGAF-AIYIVEY  156 (223)
T ss_dssp             HHHHHHH-HHHHTTS
T ss_pred             HHHHHHH-HHHHHHh
Confidence            6666664 4444443

>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}

Probab=94.52  E-value=0.023  Score=36.70  Aligned_cols=37  Identities=16%  Similarity=0.376  Sum_probs=20.8

Q ss_pred             ccchhcCCcchhhhHHHHHhHHHHh-hhhhhhheeeeccc
Q psy13561          5 NDYFQCGWNIFDLIVVTASLVDLMT-EFVDGLSVLRGLRL   43 (99)
Q Consensus         5 ~~Yf~~~WN~fDf~vv~~s~~~~~~-~~~~~l~~lR~lRl   43 (99)
                      ++|+++  |++|++.++=....... +..+.+|++|.+|+
T Consensus        80 ~~f~~~--~iiDllailP~~~~~~~~~~lr~lRvlRllRv  117 (147)
T 2kyh_A           80 AGYVKK--TLYEIPALVPAGLLALIEGHLAGLGLFRLVRL  117 (147)
T ss_dssp             HHHHHH--STTTHHHHCCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             HHHHHH--HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            679997  89998865544433332 11344444444444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	99
d1orsc_	132	Potassium channel KVAP {Archaeon Aeropyrum pernix	98.24

>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel KVAP
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=98.24  E-value=2.4e-07  Score=58.02  Aligned_cols=61  Identities=13%  Similarity=0.080  Sum_probs=43.4

Q ss_pred             cccccchhcCCcchhhhHHHHHhHHHHhh----hhhhhheeeeccc-----ChhhHHHHHHHHHHHHHHH
Q psy13561          2 ALSNDYFQCGWNIFDLIVVTASLVDLMTE----FVDGLSVLRGLRL-----SWTTMKVLLSIIISTIGAL   62 (99)
Q Consensus         2 a~~~~Yf~~~WN~fDf~vv~~s~~~~~~~----~~~~l~~lR~lRl-----~~~~~~~l~~~l~~s~p~l   62 (99)
                      |.+++|..+.||++|++.++-+.......    ..+.+|.+|.+|+     ..++++++.+++.+|.|++
T Consensus        60 ~~~~~~~~~~~~~iDl~ai~p~~~~~~~~~~~~~lr~lR~~R~~R~lrl~~~~~~~~~ll~ai~~s~~~l  129 (132)
T d1orsc_          60 KSGDPAGYVKKTLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKL  129 (132)
T ss_dssp             HTTSTTTTTTTCGGGTGGGSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCccceeCCcchHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34567777889999999998877765432    2233333333333     6789999999999999876