Psyllid ID: psy13564

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320---
Protein Sequence
VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLLIADPVSSKQADHDEDDFLMSVDS
Secondary Structure (PSIPRED)
cHHHHHHHHHHHccccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHcccHHHHHHccccccccccHHHHHHHHHHHccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHcccccccccHHHHEEHHcccccccccHHHHHHHHHHHHHHHHHccHccHcHHHEEEEEEEccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccccHHEEEccccccHHccHHHHHHHHHHHHHccEEEEEHHHHHccccccccccccccccccccccccccHHccccccccccccccccEcccEEEEcccccccccccccHHHHcccccccccccccccHHHccccc
Coil and Loop (DISEMBL)
VLFNELLAVFestilpthgithvPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIhahfmpvsigENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWChsyldntdltdeeacspvkhpvfYSVCQALFSVITYKHSILVDSKKNMKFLQSLNLTRLVMSqlnplrscnAEIVSHFASITNTYQIVYCYNVIhqnarlnvlpivstdalgniiklntvnaldqyspfstFLLVRCksiitpeihcqadpipvttntnrtqnlliadpvsskqadhdeddflmsvds
Flexible Loop (DISEMBL)
VLFNELLAVFEstilpthgitHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIVSTDALGNIIKLNtvnaldqyspFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLliadpvsskqadhdeddflmsvds
Low Complexity Region (SEG)
VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLLIADPVSSKQADHDEDDFLMSVDS
Disordered region (IsUnstruct)
**FNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLLI**********************
Disordered Region (DISOPRED)
VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYLD************VKHPVFYSVCQALFSVITYKHSILVDSKKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQ**********************TVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTT*************************FLMSVD*
Disordered Region (DISEMBL)
VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLLIADPVSSKQADHDEDDFLMSVDS
Disordered Region (DISPRO)
VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNV*PI**************VNALDQYSPFSTFLLVRCKSIITPEIHCQADP*************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLLIADPVSSKQADHDEDDFLMSVDS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	323	2.2.26 [Sep-21-2011]
B2RS91	656	RNA polymerase I-specific	yes	N/A	0.811	0.399	0.321	1e-44
Q9NYV6	651	RNA polymerase I-specific	yes	N/A	0.820	0.407	0.322	2e-44
Q5R4N9	650	RNA polymerase I-specific	yes	N/A	0.820	0.407	0.313	6e-42
Q2M238	152	Putative RRN3-like protei	no	N/A	0.461	0.980	0.364	2e-23
Q10110	599	RNA polymerase I-specific	yes	N/A	0.616	0.332	0.261	3e-13
P48322	654	Uncharacterized protein C	yes	N/A	0.582	0.287	0.235	6e-13
P36070	627	RNA polymerase I-specific	yes	N/A	0.625	0.322	0.218	2e-08

>sp|B2RS91|RRN3_MOUSE RNA polymerase I-specific transcription initiation factor RRN3 OS=Mus musculus GN=Rrn3 PE=1 SV=1

 Score =  180 bits (456), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 102/317 (32%), Positives = 158/317 (49%), Gaps = 55/317 (17%)

Query: 2   LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
           L+ +L+++F+  +LPTH   HV F +F+ CS +L   E                      
Sbjct: 341 LYRDLISIFDKLLLPTHASCHVQFFMFFLCSFKLGFAEA--------------------- 379

Query: 62  CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
                                 F+E LWKK+ +     I RQ+  +Y+ S L  A F+P+
Sbjct: 380 ----------------------FLEHLWKKLQDPNNPAIIRQAAANYIGSFLARAKFIPL 417

Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
             +KTCL+ +  W H YL N D   +  C    H  FYS CQA+F  + ++H  L+    
Sbjct: 418 ITVKTCLDLLVNWLHMYLTNQDSGTKAFCDVALHGPFYSACQAVFYTVVFRHKQLLSGNL 477

Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
           K+ +++LQSLN  R+V+SQLNPL+ C  ++V+ FA+ITN YQ+V+CY ++ +N+R  +LP
Sbjct: 478 KQGLQYLQSLNFERIVLSQLNPLKICLPQVVNFFAAITNKYQLVFCYTIMERNSR-QMLP 536

Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
           ++ + A G+ ++  T N LD + PF   +L R K  I        DPI         + L
Sbjct: 537 VIRSTAGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFI--------DPIYQIWEDGSAEEL 587

Query: 300 LIADPVSSKQADHDEDD 316
                 + K+   DEDD
Sbjct: 588 QEFKKSTKKEVVEDEDD 604

Required for efficient transcription initiation by RNA polymerase I. Required for the formation of the competent preinitiation complex (PIC). Dissociates from pol I as a consequence of transcription. In vitro, cannot activate transcription in a subsequent transcription reaction.
Mus musculus (taxid: 10090)

>sp|Q9NYV6|RRN3_HUMAN RNA polymerase I-specific transcription initiation factor RRN3 OS=Homo sapiens GN=RRN3 PE=1 SV=1

 Score =  179 bits (455), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 103/319 (32%), Positives = 157/319 (49%), Gaps = 54/319 (16%)

Query: 2   LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
           L+ +L+ +F+  +LPTH   HV F +FY CS +L   E                      
Sbjct: 343 LYRDLINIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 381

Query: 62  CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
                                 F+E LWKK+ +     I RQ+  +Y+ S L  A F+P+
Sbjct: 382 ----------------------FLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPL 419

Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
             +K+CL+ +  W H YL+N D   +  C    H  FYS CQA+F    ++H  L+    
Sbjct: 420 ITVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 479

Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
           K+ +++LQSLN  R+VMSQLNPL+ C   +V+ FA+ITN YQ+V+CY +I +N R  +LP
Sbjct: 480 KEGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLP 538

Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
           ++ + A G+ +++ T N LD + PF   +L R K  I P      D      +    Q  
Sbjct: 539 VIRSTAGGDSVQICT-NPLDTFFPFDPCVLKRSKKFIDPIYQVWED-----MSAEELQEF 592

Query: 300 LIADPVSSKQADHDEDDFL 318
               P+     + ++DDFL
Sbjct: 593 --KKPMKKDIVEDEDDDFL 609

Required for efficient transcription initiation by RNA polymerase I. Required for the formation of the competent preinitiation complex (PIC). Dissociates from pol I as a consequence of transcription. In vitro, cannot activate transcription in a subsequent transcription reaction.

Homo sapiens (taxid: 9606)

>sp|Q5R4N9|RRN3_PONAB RNA polymerase I-specific transcription initiation factor RRN3 OS=Pongo abelii GN=RRN3 PE=2 SV=1

 Score =  171 bits (433), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 100/319 (31%), Positives = 155/319 (48%), Gaps = 54/319 (16%)

Query: 2   LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
           L+ +L+ +F+  +L TH   HV F +FY CS +L   E                      
Sbjct: 342 LYRDLINIFDKLLLSTHASCHVQFFMFYLCSFKLGFAEA--------------------- 380

Query: 62  CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
                                 F+E LWKK+ +     I RQ+  +Y+ S L  A F+P+
Sbjct: 381 ----------------------FLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPL 418

Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
             +++CL+ +  W H YL+N D   +  C    H  FYS CQA+F    ++H  L+    
Sbjct: 419 ITVRSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNL 478

Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
           K+ +++LQSLN   +VMSQLNPL+ C   +V+ FA+ITN YQ+V+CY +I +N R  +LP
Sbjct: 479 KEGLRYLQSLNFEWIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLP 537

Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
           ++ + A G+ ++  T N LD + PF   +L R K  I P      D      +    Q  
Sbjct: 538 VIRSTAGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFIDPIYQVWED-----MSAEELQEF 591

Query: 300 LIADPVSSKQADHDEDDFL 318
               P+  +  + ++DDFL
Sbjct: 592 --KKPMRKEIVEDEDDDFL 608

Required for efficient transcription initiation by RNA polymerase I. Required for the formation of the competent preinitiation complex (PIC). Dissociates from pol I as a consequence of transcription. In vitro, cannot activate transcription in a subsequent transcription reaction.

Pongo abelii (taxid: 9601)

>sp|Q2M238|RN3P1_HUMAN Putative RRN3-like protein RRN3P1 OS=Homo sapiens GN=RRN3P1 PE=5 SV=1

 Score =  110 bits (274), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 83/151 (54%), Gaps = 2/151 (1%)

Query: 78  VSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHS 137
           +   E F+E LWK + +     I RQ+  +Y+ S L  A F+ +  +K CL+ +  W H 
Sbjct: 1   MGFAEAFLEHLWKNLQDPSNPAIIRQAAGNYIGSFLARAKFISLITVKPCLDLLVNWLHI 60

Query: 138 YLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS--KKNMKFLQSLNLTRLV 195
           YL+N D   +  C    H  FYS CQA+F    ++H  L+    K+ +++ QSLN  R+V
Sbjct: 61  YLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLKEGLQYPQSLNFERIV 120

Query: 196 MSQLNPLRSCNAEIVSHFASITNTYQIVYCY 226
           MSQLNPL+ C   +V+ FA+IT      Y +
Sbjct: 121 MSQLNPLKICLPSVVNFFAAITKMKTCGYGW 151

Homo sapiens (taxid: 9606)

>sp|Q10110|RRN3_SCHPO RNA polymerase I-specific transcription initiation factor rrn3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrn3 PE=3 SV=1

 Score = 75.9 bits (185), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 102/226 (45%), Gaps = 27/226 (11%)

Query: 63  CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
           C Y   L+  A  +     + F+  L +   +       R S   Y+ S +  A  +   
Sbjct: 357 CRYTQFLIFWASQLDPEFTDIFLGVLTEVCLDPSQPYTLRLSGAMYIGSYVARAKALEKN 416

Query: 123 VIKTCLNEMSQWCHSYLDN--TDLTDEEACSPVKHPVFYSVCQALFSVITYKHSIL--VD 178
            I+  +N M++W  +YLD    +L+D+      KH VFY++ Q++F +  ++   L   D
Sbjct: 417 TIQIIVNMMTRWVEAYLDQCENELSDDLLS---KHSVFYAINQSIFYIFCFRWRELCVSD 473

Query: 179 SKKNMK-----FLQSLN-LTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQN 232
             ++M+     ++  L  L R V+S+LNPLR C+  IV  FA + N    +Y Y++I QN
Sbjct: 474 ESESMEPRPNEWIPGLEILHRSVLSRLNPLRYCSPNIVLQFAKVANHLNFMYVYSIIEQN 533

Query: 233 ARLNVLPIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
            +              I +    + +D Y PF  + L +   I+ P
Sbjct: 534 RK-------------GIFR-EGFDTMDAYFPFDPYRLTKSSIIVQP 565

Required for efficient transcription initiation by RNA polymerase I.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P48322|YPJ1_CAEEL Uncharacterized protein C36E8.1 OS=Caenorhabditis elegans GN=C36E8.1 PE=3 SV=1

 Score = 75.1 bits (183), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 94/229 (41%), Gaps = 41/229 (17%)

Query: 2   LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
           LF+  L   EST+L    + +V F+  YFCSL     +  +E LW+              
Sbjct: 352 LFDTFLECLESTMLNATHVQYVSFIWLYFCSLSQEYEKKMLEHLWQ-------------- 397

Query: 62  CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
                  + I     P    ++                   Q    Y+++ L  A ++  
Sbjct: 398 -------VTIRMPRAPADARKS-------------------QGAASYLAAFLARAKYVKK 431

Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPV-KHPVFYSVCQALFSVITYKHSILVDSK 180
               T L E+  W   Y+D       +    + +H  FYSV QA F V  +++   V +K
Sbjct: 432 STAFTWLEEVYIWLRHYVDQFGSGSSQILPGLQRHGTFYSVSQAFFLVFAFRYKEFVKNK 491

Query: 181 KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVI 229
             ++ ++   + R+V S L PL+  +  +   F++IT + Q+VYC ++I
Sbjct: 492 DMLETIRRWGVGRVVHSPLEPLKYVSKPVARCFSAITRSLQLVYCNHII 540

Caenorhabditis elegans (taxid: 6239)

>sp|P36070|RRN3_YEAST RNA polymerase I-specific transcription initiation factor RRN3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRN3 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 114/270 (42%), Gaps = 68/270 (25%)

Query: 2   LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENF------IEFLWKKIANVKIY 55
           +FN L  +F++ +LPT+    + +++F+    +L + ++F      I F   + A  KI 
Sbjct: 360 VFNTLTTLFKTHVLPTYYTRSIQYIMFHVSQQQLELMDSFLVTLIDISFAVNEAAEKKIK 419

Query: 56  NIFRQSCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIH 115
           ++       Y+ S +  A                KK++  +I          +V+S L  
Sbjct: 420 SL------QYLGSYIARA----------------KKLSRTQII---------FVASYL-- 446

Query: 116 AHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSI 175
                           + W + Y+   +   ++     +   FY+  QAL  +  ++H+I
Sbjct: 447 ----------------TSWLNRYVIEREEEVDQRGGMERFKHFYAAFQALCYIFCFRHNI 490

Query: 176 LVDSKKNM-----KFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVI- 229
             D+  N      KF Q     R+V+S+ NPL+ CN  ++  FA I     + YC+++I 
Sbjct: 491 FRDTDGNWECELDKFFQ-----RMVISKFNPLKFCNENVMLMFARIAQQESVAYCFSIIE 545

Query: 230 -HQNARL-NVLPIVSTDALGNIIKLNTVNA 257
            + N RL  ++    +D   N  + NT ++
Sbjct: 546 NNNNERLRGIIGKADSDKKENSAQANTTSS 575

Required for efficient transcription initiation by RNA polymerase I. Interacts with Pol I in the absence of template DNA and stimulates recruitment of Pol I, but does not remain as part of stable preinitiation complex.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	323
47214221	609	unnamed protein product [Tetraodon nigro	0.814	0.431	0.337	1e-45
410901877	611	PREDICTED: RNA polymerase I-specific tra	0.811	0.428	0.342	3e-45
301616570	613	PREDICTED: RNA polymerase I-specific tra	0.814	0.429	0.331	7e-45
351712249	704	RNA polymerase I-specific transcription	0.823	0.377	0.329	1e-44
156547081	601	PREDICTED: RNA polymerase I-specific tra	0.795	0.427	0.347	1e-44
334333090	651	PREDICTED: RNA polymerase I-specific tra	0.826	0.410	0.330	3e-44
348584950	658	PREDICTED: RNA polymerase I-specific tra	0.826	0.405	0.333	4e-44
348543943	610	PREDICTED: RNA polymerase I-specific tra	0.808	0.427	0.337	7e-44
327286917	618	PREDICTED: LOW QUALITY PROTEIN: RNA poly	0.718	0.375	0.351	8e-44
224070078	616	PREDICTED: RNA polymerase I-specific tra	0.826	0.433	0.314	1e-43

>gi|47214221|emb|CAG00803.1| unnamed protein product [Tetraodon nigroviridis]

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 108/320 (33%), Positives = 166/320 (51%), Gaps = 57/320 (17%)

Query: 2   LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
           L+ +LL+VF+  ILPTH   HV +L+FY CS RL++                        
Sbjct: 307 LYRDLLSVFDKLILPTHASCHVQYLLFYLCSFRLALA----------------------- 343

Query: 62  CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
                               E+F++ LWK + N     + RQ+   Y+ S L  A F+PV
Sbjct: 344 --------------------ESFLDHLWKILQNPSQPAVLRQAAVGYLGSFLARAKFIPV 383

Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVK-HPVFYSVCQALFSVITYKHSILVDS- 179
             ++ CL+ +  W H Y+D+ + + ++AC  V  H  FYS CQALF V+ ++H  ++D  
Sbjct: 384 LTVRACLDLLISWIHGYIDSQNSSGKQACCDVSLHGPFYSTCQALFYVLIFRHRAMLDGH 443

Query: 180 -KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVL 238
            KK +++LQS NL R+VM QLNPL+ C   + + FA+IT  YQIV+CYNVI +N R ++L
Sbjct: 444 MKKGLEYLQSFNLERVVMCQLNPLKLCLPAVTTMFAAITRKYQIVFCYNVIERNKR-HML 502

Query: 239 PIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQN 298
           P+V +   G+ +   T N LD + PF  +LL R   +I        +P+      +    
Sbjct: 503 PVVRSSTGGDCVTAKT-NPLDSFFPFDPYLLKRSGQVI--------EPLYQVWEESADAE 553

Query: 299 LLIADPVSSKQADHDEDDFL 318
           L ++  V  + +  D+DDFL
Sbjct: 554 LFLSKTV-QQGSKEDDDDFL 572

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410901877|ref|XP_003964421.1| PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like [Takifugu rubripes]

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 110/321 (34%), Positives = 164/321 (51%), Gaps = 59/321 (18%)

Query: 2   LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
           L+ +LL+VF+  ILPTH   HV +++FY CS RL++ E                      
Sbjct: 307 LYRDLLSVFDKLILPTHASCHVQYILFYLCSFRLALTEA--------------------- 345

Query: 62  CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
                                 F++ LWK + N     I RQ+   Y+ S L  A F+PV
Sbjct: 346 ----------------------FLDHLWKILQNPSQPAILRQAAAGYLGSFLARAKFIPV 383

Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVK-HPVFYSVCQALFSVITYKHSILVDS- 179
             ++ CL+ +  W H Y+D+ + + ++AC  +  H  FYS CQA+F V+ ++H  L++  
Sbjct: 384 LTVRACLDLLISWIHGYIDSQNSSGKQACCDINLHGPFYSTCQAVFYVLIFRHRALLEGH 443

Query: 180 -KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVL 238
            KK +++LQSLNL R+VM QLNPL+ C   + S FA+IT  YQIV+CYNVI +N R  +L
Sbjct: 444 MKKGLEYLQSLNLERVVMCQLNPLKLCLPTVTSMFAAITRKYQIVFCYNVIERNNR-QLL 502

Query: 239 PIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQN 298
           P+V +   G+ +   T N LD + PF  +LL R    I P      +           ++
Sbjct: 503 PVVRSSTGGDCVTTKT-NPLDSFFPFDPYLLKRSGQAIEPLYQVWEE----------FED 551

Query: 299 LLIADPVSSKQA-DHDEDDFL 318
             +  P +SKQ    D+DDFL
Sbjct: 552 TELLSPRTSKQGPREDDDDFL 572

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301616570|ref|XP_002937728.1| PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like [Xenopus (Silurana) tropicalis]

 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 106/320 (33%), Positives = 161/320 (50%), Gaps = 57/320 (17%)

Query: 2   LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
           ++ +LLAVF+  ILPTH   HV + +FY CS RL I                        
Sbjct: 307 MYRDLLAVFDKLILPTHASCHVQYFMFYICSFRLGIA----------------------- 343

Query: 62  CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
                               E F+E LWKK+ N     + RQ+  +Y+ S L  A F+P+
Sbjct: 344 --------------------EAFVEHLWKKLQNPNNPPVIRQAAANYIGSFLARAKFIPL 383

Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
             +K CL+ +  W H Y+DN D      C    H  FY+ CQA+F    ++H+  ++   
Sbjct: 384 VTVKACLDLLVNWLHGYIDNQDAGSRAYCDVTVHGPFYAACQAVFYSFIFRHNQFLEGNM 443

Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
           +K + +LQ+LNL R+VM QLNPL+ C   +V+ FA+IT  YQ+V+CY +I +N R  ++P
Sbjct: 444 RKGLAYLQNLNLERIVMCQLNPLKICLPSVVNFFAAITRKYQLVFCYTIIERNNR-QMIP 502

Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
           I+ +   G+ +++ + N LD + PF   +L RCK ++        DP       + T++L
Sbjct: 503 IIRSSTGGDSVQV-SFNPLDSFFPFDPCILKRCKKLM--------DPFYQVWEESNTEDL 553

Query: 300 LIADP-VSSKQADHDEDDFL 318
                 + S  AD DEDDFL
Sbjct: 554 KGGQKHIKSSTAD-DEDDFL 572

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|351712249|gb|EHB15168.1| RNA polymerase I-specific transcription initiation factor RRN3 [Heterocephalus glaber]

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/322 (32%), Positives = 160/322 (49%), Gaps = 56/322 (17%)

Query: 2   LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
           L+ +L+A+F+  +LPTH   HV F +FY CS +L   E                      
Sbjct: 389 LYRDLIAIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 427

Query: 62  CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
                                 F+E LWKK+ +     I RQ+  +Y+ S L  A F+P+
Sbjct: 428 ----------------------FLEHLWKKLQDPNNPAIIRQAAGNYIGSFLARAKFVPL 465

Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
             +K+CL+ +  W H YL+N D   +  C    H  FYS CQA+F    ++H  L+D   
Sbjct: 466 ITVKSCLDLLVDWLHLYLNNQDSGAKAFCDVALHGPFYSACQAVFYTFVFRHKQLLDGNL 525

Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
           K+ +++LQSLN  R+VMSQLNPL+ C   +V+ FA+ITN YQ+V+CY +I +N R  +LP
Sbjct: 526 KEGLRYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLP 584

Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
           ++     G+ ++  T N LD + PF   +L R K  I        DPI  T      + L
Sbjct: 585 VIRNTGGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFI--------DPIYQTWEDMSAEEL 635

Query: 300 L-IADPVSSKQADHDEDDFLMS 320
             +  P+  +  + ++DDFL  
Sbjct: 636 QELKKPIKKEMVEDEDDDFLKG 657

Source: Heterocephalus glaber

Species: Heterocephalus glaber

Genus: Heterocephalus

Family: Bathyergidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|156547081|ref|XP_001602153.1| PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 [Nasonia vitripennis]

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 111/319 (34%), Positives = 172/319 (53%), Gaps = 62/319 (19%)

Query: 1   VLFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQ 60
           +++N+LL  FE  IL TH   HV F++FY CS +L++                       
Sbjct: 315 IIYNDLLYTFERIILTTHASHHVQFIMFYLCSFKLTVA---------------------- 352

Query: 61  SCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMP 120
                                E FI +LW+K++N  +  I RQS   Y++SLL  A ++ 
Sbjct: 353 ---------------------ETFIRWLWQKVSNPNVAPIIRQSAVSYIASLLARATYIT 391

Query: 121 VRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVK-HPVFYSVCQALFSVITYKHSILVDS 179
           V ++++ L EMS W HSY+ + D + E A S V+ H VFYSVCQA+F ++ ++H  ++D 
Sbjct: 392 VGLLQSVLLEMSTWIHSYISSQD-SLECANSDVRVHTVFYSVCQAMFYLLAFRHKDIIDG 450

Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
           KK++ FLQ LNLT++V  +LNPL+ C   +V +FA++T  YQ+ YCY VI +N+R N LP
Sbjct: 451 KKHLLFLQGLNLTKIVTCRLNPLKVCQPAVVQNFAAVTRNYQLAYCYTVIERNSRSN-LP 509

Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
           ++ T           +N LD + PF  +LLV     ITP  +     +P TT++  ++  
Sbjct: 510 VLQTTN-------RFINWLDTFFPFDPYLLVLSGQRITPLYNNSQCTMPNTTDSYVSR-- 560

Query: 300 LIADPVSSKQADHDEDDFL 318
                  S +++ DEDDF+
Sbjct: 561 -------SSKSECDEDDFM 572

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|334333090|ref|XP_001375091.2| PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 [Monodelphis domestica]

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 106/321 (33%), Positives = 155/321 (48%), Gaps = 54/321 (16%)

Query: 2   LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
           L+ +LL +F+  +LPTH   H+ F +FY CS +L   E F                    
Sbjct: 343 LYRDLLGIFDKLVLPTHASCHIQFFMFYLCSFKLGFTEAF-------------------- 382

Query: 62  CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
                                  +E LWKK+ N     I RQ+  +Y+ SLL  A F+P+
Sbjct: 383 -----------------------LEHLWKKLQNPNNPAILRQAAGNYIGSLLARAKFIPI 419

Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
             +K CL+ +  W H YLDN D   +  C    H  FYS CQA+F    ++H  L+D   
Sbjct: 420 ITVKACLDLLVNWLHIYLDNQDTGTKAFCDVALHGPFYSACQAVFYTFIFRHKQLLDGNL 479

Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
           ++ + +LQSLN  R+VMSQLNPL+ C   +V+ FA+IT  YQ+V+CY +I +N R  +LP
Sbjct: 480 REGLAYLQSLNFERIVMSQLNPLKICLPSVVNLFAAITRKYQLVFCYTIIERNNR-QMLP 538

Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
           ++   A G  ++  T N LD + PF   +L R K I+ P      D      +    Q  
Sbjct: 539 VLRNTAGGGSVQTCT-NPLDTFFPFDPCVLKRSKKIVDPIYQSWED-----LSAEELQEF 592

Query: 300 LIADPVSSKQADHDEDDFLMS 320
               PV+    + ++DDFL  
Sbjct: 593 --KKPVAKGTIEDEDDDFLKG 611

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348584950|ref|XP_003478235.1| PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like [Cavia porcellus]

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 107/321 (33%), Positives = 158/321 (49%), Gaps = 54/321 (16%)

Query: 2   LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
           L+ +L+A+F+  +LPTH   HV F +FY CS +L   E                      
Sbjct: 343 LYRDLIAIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA--------------------- 381

Query: 62  CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
                                 F+E LWKK+ +     I RQ+  +Y+ S L  A F+P+
Sbjct: 382 ----------------------FLEHLWKKLQDPNNPAIIRQAAGNYIGSFLARAKFVPL 419

Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
             +K+CL+ +  W H YL+N D   +  C    H  FYS CQA+F    ++H  L+ S  
Sbjct: 420 ITVKSCLDLLVNWLHIYLNNQDSGAKAFCDVALHGPFYSACQAVFYTFVFRHKQLLGSNL 479

Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
           K+ + +LQSLN  R+VMSQLNPL+ C   +V+ FA+ITN YQ+V+CY +I +N R  +LP
Sbjct: 480 KEGLSYLQSLNFQRIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLP 538

Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
           ++   A G+ ++  T N LD + PF   +L R K  I P      D        N  + L
Sbjct: 539 VIRNTAGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFIDPIYQTWED-------MNDEELL 590

Query: 300 LIADPVSSKQADHDEDDFLMS 320
               PV  +  + ++DDFL  
Sbjct: 591 EFKKPVKKEIIEDEDDDFLKG 611

Source: Cavia porcellus

Species: Cavia porcellus

Genus: Cavia

Family: Caviidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348543943|ref|XP_003459441.1| PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 [Oreochromis niloticus]

 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 110/326 (33%), Positives = 161/326 (49%), Gaps = 65/326 (19%)

Query: 2   LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
           L+ +LL VF+  ILPTH   HV + +FY CS                             
Sbjct: 306 LYRDLLTVFDKLILPTHASCHVQYTLFYLCS----------------------------- 336

Query: 62  CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
                        F P ++ E F++ LWK + N  +  + RQ+   Y+ S L  A F+P+
Sbjct: 337 -------------FKP-ALAEAFLDHLWKILQNPSLPAVLRQAAAGYLGSFLARAKFIPL 382

Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVK-HPVFYSVCQALFSVITYKHSILVDS- 179
             +  CL+ +  W H Y+D+ D   ++ C  V  H  FY+ CQA+F  I ++H  ++++ 
Sbjct: 383 STVWACLDLLISWIHQYIDSQDSCGKQVCCDVSLHGPFYTSCQAVFYTIIFRHRAMLEAN 442

Query: 180 -KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVL 238
            KK +++LQSLNL R+VM QLNPLR C   I + FA+IT  YQ+V+CY +I +N R  VL
Sbjct: 443 MKKGLEYLQSLNLERVVMCQLNPLRVCLPSITNMFAAITRKYQVVFCYTIIERNNRC-VL 501

Query: 239 PIVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQN 298
           P+V + A G+ +  NT N LD + PF  +LL R   +I P      D             
Sbjct: 502 PVVRSSAGGDCVTTNT-NPLDSFFPFDPYLLKRSGQLIEPLYQVWDD------------- 547

Query: 299 LLIADPVSSKQADH----DEDDFLMS 320
           LL  +P  +K+       DEDDFL  
Sbjct: 548 LLDTEPFPTKRGQQGSREDEDDFLFG 573

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|327286917|ref|XP_003228176.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase I-specific transcription initiation factor RRN3-like [Anolis carolinensis]

 Score =  183 bits (465), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 98/279 (35%), Positives = 146/279 (52%), Gaps = 47/279 (16%)

Query: 2   LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
           L+ +L+AVF+  ILPTHG  HV +++FY  S +L I                        
Sbjct: 315 LYRDLVAVFDKLILPTHGSCHVQYIMFYLSSFKLGIA----------------------- 351

Query: 62  CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
                               E F+E LWKK+ +     + RQ+  +Y+ S L  A F+PV
Sbjct: 352 --------------------EAFVEHLWKKLQDPNTPTVIRQAAANYIGSFLARAKFIPV 391

Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
             +K CL+ +  W H Y+DN     +  C    H  FY+ CQA+F V+ ++H  ++D   
Sbjct: 392 VTVKACLDLLVNWLHLYIDNQGSGSKAFCDVALHGSFYAACQAVFYVVIFRHKQILDGSL 451

Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
           KK + FLQ+LN  R+VMSQLNPL+ C   IV+ FA++T  YQI +C  +I +N R  VLP
Sbjct: 452 KKGLLFLQNLNFERIVMSQLNPLKICLPSIVNFFAALTRKYQIAFCDTIIERNRR-QVLP 510

Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITP 278
           ++ +   G+ ++  T N LD + PF  ++L R K+II P
Sbjct: 511 VIRSSCGGDAVETAT-NPLDSFFPFDPYVLNRSKNIINP 548

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|224070078|ref|XP_002195883.1| PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform 1 [Taeniopygia guttata]

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 101/321 (31%), Positives = 159/321 (49%), Gaps = 54/321 (16%)

Query: 2   LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
           L+ +L++VF+  ILPTH   HV + +FY CS +L   E                      
Sbjct: 309 LYRDLVSVFDKLILPTHASCHVQYFMFYICSFKLGFAEA--------------------- 347

Query: 62  CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
                                 F++ LWKK+ +    ++ RQ+   Y+ S L  A F+P+
Sbjct: 348 ----------------------FLDHLWKKLQDPNNPSVIRQTAGSYIGSFLARAKFIPI 385

Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS-- 179
             +K CL+ +  W H Y+DN D      C    H  FYS CQA+F  + ++H  L+D   
Sbjct: 386 VTVKACLDLLVNWLHKYIDNQDKGANAYCDVALHGPFYSTCQAVFYTLIFRHKQLLDGNL 445

Query: 180 KKNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
           +K + +LQSLN  R+VM QLNPL+ C   +V+ FA+IT  YQ+V+CY +I +N RL ++P
Sbjct: 446 RKGLSYLQSLNFERIVMCQLNPLKICIPSVVNLFAAITRKYQLVFCYTIIERNNRL-LIP 504

Query: 240 IVSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
           +V +   G++++  T N LD + PF  ++L R K  I P      +      +    +NL
Sbjct: 505 VVRSGTGGDLVQTCT-NPLDSFFPFDPYILKRSKKTIDPMYQFWEE-----LSAEDLENL 558

Query: 300 LIADPVSSKQADHDEDDFLMS 320
               P+    ++ ++DDFL  
Sbjct: 559 --KKPIEKGTSEDEDDDFLKG 577

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	323
UNIPROTKB|F1NIF7	622	RRN3 "Uncharacterized protein"	0.761	0.395	0.344	3.1e-40
UNIPROTKB|I3LD85	430	RRN3 "Uncharacterized protein"	0.761	0.572	0.359	4.2e-40
UNIPROTKB|E1B883	673	RRN3 "Uncharacterized protein"	0.761	0.365	0.356	7e-40
MGI|MGI:1925255	656	Rrn3 "RRN3 RNA polymerase I tr	0.854	0.420	0.334	9.6e-40
UNIPROTKB|B4E0J7	469	RRN3 "cDNA FLJ52380, highly si	0.761	0.524	0.352	1.1e-39
UNIPROTKB|B4E3T2	618	RRN3 "cDNA FLJ53965, highly si	0.761	0.398	0.352	1.5e-39
UNIPROTKB|F5H148	621	RRN3 "RNA polymerase I-specifi	0.761	0.396	0.352	1.6e-39
UNIPROTKB|Q9NYV6	651	RRN3 "RNA polymerase I-specifi	0.761	0.377	0.352	2.6e-39
RGD|1305001	661	Rrn3 "RRN3 RNA polymerase I tr	0.746	0.364	0.348	1.8e-38
ZFIN|ZDB-GENE-080225-1	612	rrn3 "RRN3 RNA polymerase I tr	0.758	0.400	0.337	2.2e-37

UNIPROTKB|F1NIF7 RRN3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 429 (156.1 bits), Expect = 3.1e-40, P = 3.1e-40
 Identities = 89/258 (34%), Positives = 139/258 (53%)

Query:    63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
             CH V   + H   +   + E F++ LWKK+ +    ++ RQ+   Y+ S L  A F+PV 
Sbjct:   330 CH-VQYFIFHICSLKSGLAEAFLDHLWKKLQDPNNPSVIRQTAGSYIGSFLARAKFIPVV 388

Query:   123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS--K 180
              +K CL+ +  W H Y+DN D      C    H  FYS CQA F  + ++H  L+D   +
Sbjct:   389 TVKACLDLLVNWMHKYIDNQDTGANAYCDVALHGPFYSACQAAFYTLIFRHKQLLDGNLR 448

Query:   181 KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPI 240
             K + +LQSLN  R+VM QLNPL+ C   +V+ FA+IT  YQ+V+CY +I +N R   +P+
Sbjct:   449 KGLSYLQSLNFERIVMCQLNPLKICIPSVVNLFAAITRKYQLVFCYTIIERNNR-QFIPV 507

Query:   241 VSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLL 300
             V +   G+ +++ T N LD + PF  ++L R K  I P      +      +    +NL 
Sbjct:   508 VRSGTGGDFVQMCT-NPLDSFFPFDPYVLKRSKKTIDPFYQFWEE-----LSAEDLENL- 560

Query:   301 IADPVSSKQADHDEDDFL 318
                P+    ++ ++DDFL
Sbjct:   561 -KKPIKKGTSEDEDDDFL 577

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006361 "transcription initiation from RNA polymerase I promoter" evidence=IEA

GO:0007000 "nucleolus organization" evidence=IEA

GO:0007028 "cytoplasm organization" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0048872 "homeostasis of number of cells" evidence=IEA

GO:0070063 "RNA polymerase binding" evidence=IEA

GO:2000142 "regulation of DNA-dependent transcription, initiation" evidence=IEA

UNIPROTKB|I3LD85 RRN3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 93/259 (35%), Positives = 142/259 (54%)

Query:    63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
             CH V   + +     +   E F+E LWKK+ +     I RQ+  +Y+ S L  A F+P+ 
Sbjct:   140 CH-VQFFMFYLCSFKLGFAEAFLEHLWKKLQDPNNPAIIRQAAANYIGSFLARAKFIPLI 198

Query:   123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS--K 180
              +K+CL+ +  W H YL+N D   +  C    H  FYS CQA+F    ++H  L+    K
Sbjct:   199 TVKSCLDLLVNWLHVYLNNQDSGAKAFCDVALHGPFYSACQAVFYTFVFRHRQLLSGNLK 258

Query:   181 KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPI 240
             + +++LQSLN  R+VMSQLNPL+ C   +V+ FA+IT+ YQ+V+CY +I +N  L +LP+
Sbjct:   259 EGLRYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITSKYQLVFCYTLIERN-NLKMLPV 317

Query:   241 -VSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNL 299
              +   A G+ ++  T N LD + PF   +L R K  I P      D      +    Q L
Sbjct:   318 XIRNTAGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFIDPVYQVWED-----LSAEELQEL 371

Query:   300 LIADPVSSKQADHDEDDFL 318
                 P+  ++A+ +EDDFL
Sbjct:   372 --KKPIKKEEAEDEEDDFL 388

GO:2000142 "regulation of DNA-dependent transcription, initiation" evidence=IEA

GO:0070063 "RNA polymerase binding" evidence=IEA

GO:0048872 "homeostasis of number of cells" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0007028 "cytoplasm organization" evidence=IEA

GO:0007000 "nucleolus organization" evidence=IEA

GO:0006361 "transcription initiation from RNA polymerase I promoter" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

UNIPROTKB|E1B883 RRN3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 429 (156.1 bits), Expect = 7.0e-40, P = 7.0e-40
 Identities = 92/258 (35%), Positives = 139/258 (53%)

Query:    63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
             CH V   + +     +   E F+E LWKK+ +     I RQ+  +Y+ S L  A F+P+ 
Sbjct:   384 CH-VQFFMFYLCSFKLGFAEAFLEHLWKKLQDPNNPAIIRQAAANYIGSFLARAKFIPLI 442

Query:   123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS--K 180
              +K+CL+ +  W H YL+N D   +  C    H  FYS CQA+F    ++H  L+    K
Sbjct:   443 TVKSCLDLLVNWLHVYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLK 502

Query:   181 KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPI 240
             + +++LQSLN  R+VMSQLNPL+ C   +V+ FA+ITN YQ+V+CY +I +N R  +LP+
Sbjct:   503 EGLRYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTLIERNNR-QMLPV 561

Query:   241 VSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLL 300
             +   A G+ ++  T N LD + PF   +L R K  I P      D      +    Q   
Sbjct:   562 IRNTAGGDSVQTCT-NPLDTFFPFDPCVLKRSKKFIDPLYQIWED-----MSAEELQEF- 614

Query:   301 IADPVSSKQADHDEDDFL 318
                P+  +  + +EDDFL
Sbjct:   615 -KKPIKKEVVEDEEDDFL 631

GO:2000142 "regulation of DNA-dependent transcription, initiation" evidence=IEA

GO:0070063 "RNA polymerase binding" evidence=IEA

GO:0048872 "homeostasis of number of cells" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0007028 "cytoplasm organization" evidence=IEA

GO:0007000 "nucleolus organization" evidence=IEA

GO:0006361 "transcription initiation from RNA polymerase I promoter" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

MGI|MGI:1925255 Rrn3 "RRN3 RNA polymerase I transcription factor homolog (yeast)" [Mus musculus (taxid:10090)]

 Score = 427 (155.4 bits), Expect = 9.6e-40, P = 9.6e-40
 Identities = 98/293 (33%), Positives = 156/293 (53%)

Query:    31 CSLRLSIGENFIEFLWKKIANV--KIYNIFRQSCCHYVSSLLIHAHFMPVSIGENFIEFL 88
             C +   I  N  + L++ + ++  K+  +   + CH    +     F  +   E F+E L
Sbjct:   327 CRVHGKIDNNKTKDLYRDLISIFDKLL-LPTHASCHVQFFMFFLCSFK-LGFAEAFLEHL 384

Query:    89 WKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEE 148
             WKK+ +     I RQ+  +Y+ S L  A F+P+  +KTCL+ +  W H YL N D   + 
Sbjct:   385 WKKLQDPNNPAIIRQAAANYIGSFLARAKFIPLITVKTCLDLLVNWLHMYLTNQDSGTKA 444

Query:   149 ACSPVKHPVFYSVCQALFSVITYKHSILVDS--KKNMKFLQSLNLTRLVMSQLNPLRSCN 206
              C    H  FYS CQA+F  + ++H  L+    K+ +++LQSLN  R+V+SQLNPL+ C 
Sbjct:   445 FCDVALHGPFYSACQAVFYTVVFRHKQLLSGNLKQGLQYLQSLNFERIVLSQLNPLKICL 504

Query:   207 AEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIVSTDALGNIIKLNTVNALDQYSPFST 266
              ++V+ FA+ITN YQ+V+CY ++ +N+R  +LP++ + A G+ ++  T N LD + PF  
Sbjct:   505 PQVVNFFAAITNKYQLVFCYTIMERNSR-QMLPVIRSTAGGDSVQTCT-NPLDTFFPFDP 562

Query:   267 FLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLLIADPVSSKQADHDEDD-FL 318
              +L R K  I        DPI         + L      + K+   DEDD FL
Sbjct:   563 CVLKRSKKFI--------DPIYQIWEDGSAEELQEFKKSTKKEVVEDEDDDFL 607

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006361 "transcription initiation from RNA polymerase I promoter" evidence=IMP

GO:0007000 "nucleolus organization" evidence=IMP

GO:0007028 "cytoplasm organization" evidence=IMP

GO:0008283 "cell proliferation" evidence=IMP

GO:0042254 "ribosome biogenesis" evidence=IMP

GO:0043066 "negative regulation of apoptotic process" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0048872 "homeostasis of number of cells" evidence=IMP

GO:0070063 "RNA polymerase binding" evidence=IDA

GO:2000142 "regulation of DNA-dependent transcription, initiation" evidence=IDA

UNIPROTKB|B4E0J7 RRN3 "cDNA FLJ52380, highly similar to RNA polymerase I-specific transcriptioninitiation factor RRN3" [Homo sapiens (taxid:9606)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 91/258 (35%), Positives = 140/258 (54%)

Query:    63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
             CH V   + +     +   E F+E LWKK+ +     I RQ+  +Y+ S L  A F+P+ 
Sbjct:   180 CH-VQFFMFYLCSFKLGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLI 238

Query:   123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS--K 180
              +K+CL+ +  W H YL+N D   +  C    H  FYS CQA+F    ++H  L+    K
Sbjct:   239 TVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLK 298

Query:   181 KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPI 240
             + +++LQSLN  R+VMSQLNPL+ C   +V+ FA+ITN YQ+V+CY +I +N R  +LP+
Sbjct:   299 EGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLPV 357

Query:   241 VSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLL 300
             + + A G+ +++ T N LD + PF   +L R K  I P      D      +    Q   
Sbjct:   358 IRSTAGGDSVQICT-NPLDTFFPFDPCVLKRSKKFIDPIYQVWED-----MSAEELQEF- 410

Query:   301 IADPVSSKQADHDEDDFL 318
                P+     + ++DDFL
Sbjct:   411 -KKPMKKDIVEDEDDDFL 427

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|B4E3T2 RRN3 "cDNA FLJ53965, highly similar to RNA polymerase I-specific transcription initiation factor RRN3" [Homo sapiens (taxid:9606)]

 Score = 423 (154.0 bits), Expect = 1.5e-39, P = 1.5e-39
 Identities = 91/258 (35%), Positives = 140/258 (54%)

Query:    63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
             CH V   + +     +   E F+E LWKK+ +     I RQ+  +Y+ S L  A F+P+ 
Sbjct:   329 CH-VQFFMFYLCSFKLGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLI 387

Query:   123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS--K 180
              +K+CL+ +  W H YL+N D   +  C    H  FYS CQA+F    ++H  L+    K
Sbjct:   388 TVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLK 447

Query:   181 KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPI 240
             + +++LQSLN  R+VMSQLNPL+ C   +V+ FA+ITN YQ+V+CY +I +N R  +LP+
Sbjct:   448 EGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLPV 506

Query:   241 VSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLL 300
             + + A G+ +++ T N LD + PF   +L R K  I P      D      +    Q   
Sbjct:   507 IRSTAGGDSVQICT-NPLDTFFPFDPCVLKRSKKFIDPIYQVWED-----MSAEELQEF- 559

Query:   301 IADPVSSKQADHDEDDFL 318
                P+     + ++DDFL
Sbjct:   560 -KKPMKKDIVEDEDDDFL 576

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0006361 "transcription initiation from RNA polymerase I promoter" evidence=IEA

GO:0007000 "nucleolus organization" evidence=IEA

GO:0007028 "cytoplasm organization" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0048872 "homeostasis of number of cells" evidence=IEA

GO:0070063 "RNA polymerase binding" evidence=IEA

GO:2000142 "regulation of DNA-dependent transcription, initiation" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F5H148 RRN3 "RNA polymerase I-specific transcription initiation factor RRN3" [Homo sapiens (taxid:9606)]

 Score = 423 (154.0 bits), Expect = 1.6e-39, P = 1.6e-39
 Identities = 91/258 (35%), Positives = 140/258 (54%)

Query:    63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
             CH V   + +     +   E F+E LWKK+ +     I RQ+  +Y+ S L  A F+P+ 
Sbjct:   332 CH-VQFFMFYLCSFKLGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLI 390

Query:   123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS--K 180
              +K+CL+ +  W H YL+N D   +  C    H  FYS CQA+F    ++H  L+    K
Sbjct:   391 TVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLK 450

Query:   181 KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPI 240
             + +++LQSLN  R+VMSQLNPL+ C   +V+ FA+ITN YQ+V+CY +I +N R  +LP+
Sbjct:   451 EGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLPV 509

Query:   241 VSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLL 300
             + + A G+ +++ T N LD + PF   +L R K  I P      D      +    Q   
Sbjct:   510 IRSTAGGDSVQICT-NPLDTFFPFDPCVLKRSKKFIDPIYQVWED-----MSAEELQEF- 562

Query:   301 IADPVSSKQADHDEDDFL 318
                P+     + ++DDFL
Sbjct:   563 -KKPMKKDIVEDEDDDFL 579

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|Q9NYV6 RRN3 "RNA polymerase I-specific transcription initiation factor RRN3" [Homo sapiens (taxid:9606)]

 Score = 423 (154.0 bits), Expect = 2.6e-39, P = 2.6e-39
 Identities = 91/258 (35%), Positives = 140/258 (54%)

Query:    63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
             CH V   + +     +   E F+E LWKK+ +     I RQ+  +Y+ S L  A F+P+ 
Sbjct:   362 CH-VQFFMFYLCSFKLGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLI 420

Query:   123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS--K 180
              +K+CL+ +  W H YL+N D   +  C    H  FYS CQA+F    ++H  L+    K
Sbjct:   421 TVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLK 480

Query:   181 KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPI 240
             + +++LQSLN  R+VMSQLNPL+ C   +V+ FA+ITN YQ+V+CY +I +N R  +LP+
Sbjct:   481 EGLQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNR-QMLPV 539

Query:   241 VSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLL 300
             + + A G+ +++ T N LD + PF   +L R K  I P      D      +    Q   
Sbjct:   540 IRSTAGGDSVQICT-NPLDTFFPFDPCVLKRSKKFIDPIYQVWED-----MSAEELQEF- 592

Query:   301 IADPVSSKQADHDEDDFL 318
                P+     + ++DDFL
Sbjct:   593 -KKPMKKDIVEDEDDDFL 609

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0007000 "nucleolus organization" evidence=IEA

GO:0007028 "cytoplasm organization" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0048872 "homeostasis of number of cells" evidence=IEA

GO:0070063 "RNA polymerase binding" evidence=IEA

GO:2000142 "regulation of DNA-dependent transcription, initiation" evidence=IEA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006360 "transcription from RNA polymerase I promoter" evidence=TAS

GO:0006361 "transcription initiation from RNA polymerase I promoter" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0005730 "nucleolus" evidence=IDA

RGD|1305001 Rrn3 "RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 416 (151.5 bits), Expect = 1.8e-38, P = 1.8e-38
 Identities = 90/258 (34%), Positives = 141/258 (54%)

Query:    63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
             C +  SLL+          E F+E LWKK+ +     I RQ+  +Y+ S L  A F+P+ 
Sbjct:   370 CSFKLSLLLQG------FAEAFLEHLWKKLQDPNNPVIIRQAAANYIGSFLARAKFIPLI 423

Query:   123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS--K 180
              +K+CL+ +  W H YL++ D   +  C    H  FYS CQA+F  + ++H  L+    K
Sbjct:   424 TVKSCLDLLVNWLHLYLNSQDSGTKAFCDVALHGPFYSACQAVFYTVVFRHKQLLSGNLK 483

Query:   181 KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPI 240
             + +++LQSLN  R+V+SQLNPL+ C   +V+ FA+ITN YQ+V+CY ++ +N R  +LP+
Sbjct:   484 EGLRYLQSLNFERIVLSQLNPLKICLPRVVNFFAAITNKYQLVFCYTIMERNNR-QMLPV 542

Query:   241 VSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLL 300
             + + A G+ ++  T N LD + PF   +L R K  I P      D      +    Q L 
Sbjct:   543 IRSTAGGDSVQTCT-NPLDTFFPFDPCMLKRSKKFIDPVYQAWED-----MSDEELQEL- 595

Query:   301 IADPVSSKQADHDEDDFL 318
                P   +  + ++DDFL
Sbjct:   596 -RKPTRKELVEDEDDDFL 612

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

GO:0006352 "DNA-dependent transcription, initiation" evidence=ISO

GO:0006361 "transcription initiation from RNA polymerase I promoter" evidence=ISO

GO:0007000 "nucleolus organization" evidence=ISO

GO:0007028 "cytoplasm organization" evidence=ISO

GO:0008283 "cell proliferation" evidence=ISO

GO:0042254 "ribosome biogenesis" evidence=ISO

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0048872 "homeostasis of number of cells" evidence=ISO

GO:0070063 "RNA polymerase binding" evidence=ISO

GO:2000142 "regulation of DNA-dependent transcription, initiation" evidence=ISO

ZFIN|ZDB-GENE-080225-1 rrn3 "RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 404 (147.3 bits), Expect = 2.2e-37, P = 2.2e-37
 Identities = 87/258 (33%), Positives = 137/258 (53%)

Query:    63 CHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVR 122
             CH V   + +     + + E F++ LWK +      ++ RQS   Y+ S +  A F+PV 
Sbjct:   326 CH-VQFYMFYLCSFRLGLAEAFLDHLWKLLQGPNQPSVLRQSAAGYMGSFMARAKFLPVS 384

Query:   123 VIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDS--K 180
              +K CL+ +  W H Y+D+ D   +  C    H  FY+ CQA+F  + +KH+ +++   K
Sbjct:   385 TVKACLDLLVPWLHLYIDSQDSGSKAFCDINLHGPFYTACQAVFYTLIFKHNAILEGNMK 444

Query:   181 KNMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPI 240
             K + +LQ LNL R+VM QLNPLR C   + + FA+IT  YQ+V+CY +I +N R ++LP+
Sbjct:   445 KGLAYLQGLNLERIVMCQLNPLRVCLPAVTNMFAAITRKYQLVFCYTIIERNNR-HLLPV 503

Query:   241 VSTDALGNIIKLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPVTTNTNRTQNLL 300
             V +   G+ +  NT N LD + PF  +LL     +I P      +P        + +   
Sbjct:   504 VRSSVGGSSVATNT-NPLDSFFPFDPYLLKSSGKLIEPIYQVWEEPSDCMIGVPKKEI-- 560

Query:   301 IADPVSSKQADHDEDDFL 318
                P  S +   +EDDFL
Sbjct:   561 ---PKGSME---EEDDFL 572

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	323
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	2e-50

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score =  174 bits (444), Expect = 2e-50
 Identities = 86/286 (30%), Positives = 133/286 (46%), Gaps = 53/286 (18%)

Query: 2   LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
           LFN LL++F++ ILPT+   HV FL+F+F SL   + + F+  LW    N          
Sbjct: 301 LFNTLLSLFDNHILPTYRSRHVQFLLFHFSSLSPELMDAFLGTLWDIAFNPN-------- 352

Query: 62  CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
                          P                        RQ+   Y++S L  A  +P+
Sbjct: 353 --------------EPAVK---------------------RQAAAAYLASFLARAKHVPL 377

Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
             ++  L+ +  W + Y+D  + ++       +H VFYS CQAL  +  ++   L+ S K
Sbjct: 378 EQVRFVLSLLVDWLNRYVDERE-SECRGPDLERHGVFYSACQALLYIFCFRWRDLLLSPK 436

Query: 182 NMKFLQSLN--LTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP 239
           ++++LQSL+  L R+VMS+LNPL+ C   +VS FA I    Q+VYCY++I +N R  +  
Sbjct: 437 DLEWLQSLDKFLQRIVMSKLNPLKYCLPSVVSEFARIARHLQLVYCYSIIERNKRERLSR 496

Query: 240 IVSTDALGNIIKLNTVNA-------LDQYSPFSTFLLVRCKSIITP 278
           +    A    ++     A       LD Y PF  +LL R K  I P
Sbjct: 497 VRGGSASDGALRERPSAAGDEKTRQLDAYFPFDPYLLKRSKKWIEP 542

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	323
3tj1_A	649	Crystal Structure Of Rna Polymerase I Transcription		1e-09

>pdb|3TJ1|A Chain A, Crystal Structure Of Rna Polymerase I Transcription Initiation Factor Rrn3 Length = 649

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 114/270 (42%), Gaps = 68/270 (25%)
Query: 2   LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENF------IEFLWKKIANVKIY 55
           +FN L  +F++ +LPT+    + +++F+    +L + ++F      I F   + A  KI 
Sbjct: 382 VFNTLTTLFKTHVLPTYYTRSIQYIMFHVSQQQLELMDSFLVTLIDISFAVNEAAEKKIK 441
Query: 56  NIFRQSCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIH 115
           ++       Y+ S +  A                KK++  +I          +V+S L  
Sbjct: 442 SL------QYLGSYIARA----------------KKLSRTQII---------FVASYL-- 468
Query: 116 AHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSI 175
                           + W + Y+   +   ++     +   FY+  QAL  +  ++H+I
Sbjct: 469 ----------------TSWLNRYVIEREEEVDQRGGMERFKHFYAAFQALCYIFCFRHNI 512
Query: 176 LVDSKKNM-----KFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVI- 229
             D+  N      KF Q     R+V+S+ NPL+ CN  ++  FA I     + YC+++I 
Sbjct: 513 FRDTDGNWECELDKFFQ-----RMVISKFNPLKFCNENVMLMFARIAQQESVAYCFSIIE 567
Query: 230 -HQNARL-NVLPIVSTDALGNIIKLNTVNA 257
            + N RL  ++    +D   N  + NT ++
Sbjct: 568 NNNNERLRGIIGKADSDKKENSAQANTTSS 597

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	323
3tj1_A	649	RNA polymerase I-specific transcription initiatio	7e-53
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae} Length = 649

 Score =  182 bits (463), Expect = 7e-53
 Identities = 48/292 (16%), Positives = 100/292 (34%), Gaps = 58/292 (19%)

Query: 2   LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQS 61
           +FN L  +F++ +LPT+    + +++F+    +L + ++F+  L      V      +  
Sbjct: 382 VFNTLTTLFKTHVLPTYYTRSIQYIMFHVSQQQLELMDSFLVTLIDISFAVNEAAEKKIK 441

Query: 62  CCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPV 121
              Y+ S +  A  +  +                                          
Sbjct: 442 SLQYLGSYIARAKKLSRT------------------------------------------ 459

Query: 122 RVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYKHSILVDSKK 181
             I    + ++ W + Y+   +   ++     +   FY+  QAL  +  ++H+I  D+  
Sbjct: 460 -QIIFVASYLTSWLNRYVIEREEEVDQRGGMERFKHFYAAFQALCYIFCFRHNIFRDTDG 518

Query: 182 NMKFLQSLNLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLPIV 241
           N +        R+V+S+ NPL+ CN  ++  FA I     + YC+++I  N    +  I+
Sbjct: 519 NWECELDKFFQRMVISKFNPLKFCNENVMLMFARIAQQESVAYCFSIIENNNNERLRGII 578

Query: 242 STDALGNIIKLNTV---------------NALDQYSPFSTFLLVRCKSIITP 278
                                          L  Y P+    L   K ++  
Sbjct: 579 GKADSDKKENSAQANTTSSSWSLATRQQFIDLQSYFPYDPLFLKNYKILMKE 630

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 3e-05
 Identities = 43/292 (14%), Positives = 94/292 (32%), Gaps = 92/292 (31%)

Query: 5   ELLAVFESTI------LPTHGITHVPFLVFYFCSLRLSIGENFIEFL-----WKKIANVK 53
           E+ ++    +      LP   +T  P  +    S+   I E+  + L     WK +   K
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRL----SI---IAESIRDGLATWDNWKHVNCDK 354

Query: 54  IYNIFRQSCCHYVSSLLIHAHFMPVSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLL 113
           +  I  +S  + +        F  +S+   F         +  I                
Sbjct: 355 LTTII-ESSLNVLEPAEYRKMFDRLSV---FPP-------SAHI---------------- 387

Query: 114 IHAHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSVCQALFSVITYK- 172
                 P  ++         W        D+   +    V     YS+ +      T   
Sbjct: 388 ------PTILLSLI------WF-------DVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428

Query: 173 HSILVDSKKNMKFLQSLNLTRLVMSQLNPLRSCNAE--------------IVSHFASITN 218
            SI ++ K  ++   +L+  R ++   N  ++ +++              I  H  +I +
Sbjct: 429 PSIYLELKVKLENEYALH--RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486

Query: 219 T-----YQIVYC-YNVIHQNARLNVLPIVSTDALGNIIKLNTVNALDQYSPF 264
                 +++V+  +  + Q  R +     ++ ++     LNT+  L  Y P+
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI-----LNTLQQLKFYKPY 533

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	323
3tj1_A	649	RNA polymerase I-specific transcription initiatio	100.0

>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-81  Score=646.35  Aligned_cols=242  Identities=20%  Similarity=0.353  Sum_probs=214.1

Q ss_pred             hHHHHHHHHhhcccCCCCccccchhhhhhhccChhhHhHHHHHHHHHHhcccccccccccccccccchhhhcccCccccc
Q psy13564          2 LFNELLAVFESTILPTHGITHVPFLVFYFCSLRLSIGENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVSIG   81 (323)
Q Consensus         2 lf~~Ll~~F~~~ILpT~~sk~vQFL~Fy~cs~~~~~~e~Fl~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (323)
                      +|++|+.+|+++|||||+|||||||+||+||++|+++++|+++||+++++|++                           
T Consensus       382 lf~~Ll~~F~~~ILpT~~sr~vQFl~Fy~cs~~~~~~~~Fl~~L~~~~~~~~~---------------------------  434 (649)
T 3tj1_A          382 VFNTLTTLFKTHVLPTYYTRSIQYIMFHVSQQQLELMDSFLVTLIDISFAVNE---------------------------  434 (649)
T ss_dssp             HHHHHHHHHHHTTTTSCSCSSTTHHHHHHHTTSHHHHHHHHHHHHHHHHCSSS---------------------------
T ss_pred             HHHHHHHHHHHhccccccCccHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCC---------------------------
Confidence            79999999999999999999999999999999999999999999999999999                           


Q ss_pred             hhHHHHHHHHhhhccchhhHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCchhHHHH
Q psy13564         82 ENFIEFLWKKIANVKIYNIFRQSCCHYVSSLLIHAHFMPVRVIKTCLNEMSQWCHSYLDNTDLTDEEACSPVKHPVFYSV  161 (323)
Q Consensus        82 ~~~~~~l~kk~~~~~~~~~~RqaAaaYlaSflaRA~fv~~~~v~~~l~~L~~w~~~Yi~~~~~~s~~~~d~~~h~vFYsv  161 (323)
                                      |+++||+||+|||||||||||||.++|+.++++|++||+.|+++++..++++.+.++|++|||+
T Consensus       435 ----------------~~~~RqaAaaYLaSflARAk~v~~~~v~~vl~~L~~wl~~Yi~~~~~~~~~~~~~~~~~~FYs~  498 (649)
T 3tj1_A          435 ----------------AAEKKIKSLQYLGSYIARAKKLSRTQIIFVASYLTSWLNRYVIEREEEVDQRGGMERFKHFYAA  498 (649)
T ss_dssp             ----------------CHHHHHHHHHHHHHHHHHBTTCCHHHHHHHHHHHHHHHHHHHHHHGGGTTSSSCGGGGHHHHHH
T ss_pred             ----------------cHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhcccccCCccHHHHhHHHHH
Confidence                            9999999999999999999999999999999999999999999988776666788999999999


Q ss_pred             HHHHHHHHhhcchhhhccccchhhhhcc--cchhhhhcCCCccccccHHHHHHHHHhhhhcccchhhhhHhhcccccccc
Q psy13564        162 CQALFSVITYKHSILVDSKKNMKFLQSL--NLTRLVMSQLNPLRSCNAEIVSHFASITNTYQIVYCYNVIHQNARLNVLP  239 (323)
Q Consensus       162 cQAlfYIfCFR~~~L~~~~~~~~~l~~l--~l~rii~s~LnPLk~C~psVV~~Fa~ia~~~~l~yc~~iie~N~r~~~lp  239 (323)
                      |||+||||||||++|++.+.  .|...+  +|+|+|+|+|||||+|+|+||.+||+||+++|++|||+|||+||| .+++
T Consensus       499 cQA~fYIfCFR~rdL~~~~~--~w~~~l~~~l~riv~s~LNPLk~C~p~VV~eFA~ia~~~~l~YCy~iiE~NkR-~rl~  575 (649)
T 3tj1_A          499 FQALCYIFCFRHNIFRDTDG--NWECELDKFFQRMVISKFNPLKFCNENVMLMFARIAQQESVAYCFSIIENNNN-ERLR  575 (649)
T ss_dssp             HHHHHHHHHHHGGGGBCTTS--CBGGGHHHHHHHHHHSTTCHHHHSCHHHHHHHHHHHHHTTSCCCHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHHHhcccc--chhhhHhhhHHHHhcCCCCCcccCCHHHHHHHHHHHHHcCeEeehHhhhcccc-cccc
Confidence            99999999999999998643  444443  699999999999999999999999999999999999999999999 6666


Q ss_pred             ccccccc---cc--------cc-----cccccccCCccCCCCCCCcccccccccccceeccCCCCC
Q psy13564        240 IVSTDAL---GN--------II-----KLNTVNALDQYSPFSTFLLVRCKSIITPEIHCQADPIPV  289 (323)
Q Consensus       240 ~~~s~~~---g~--------~~-----~~~~~~~Ld~fFPFDPYlL~~S~~~I~p~Y~~W~~~~~~  289 (323)
                      +..+.+.   |+        +.     +....++||+|||||||.||||++||+|+|++|++++|.
T Consensus       576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ld~fFPFDPy~L~~Sk~~i~~~Y~~W~~v~~~  641 (649)
T 3tj1_A          576 GIIGKADSDKKENSAQANTTSSSWSLATRQQFIDLQSYFPYDPLFLKNYKILMKEYYIEWSEASGE  641 (649)
T ss_dssp             C--------------------CCCCHHHHHHHHHHHHCCTTSCCCSHHHHHHHGGGBCCHHHHC--
T ss_pred             cccccccCCcccccccccccccccccccccccCcCcCCCCCCCcccccchhhhchhceeccCCCCc
Confidence            5543321   11        00     011236899999999999999999999999999999973

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00