Psyllid ID: psy13577

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-----
Protein Sequence
MKLLGAFVVTLVVAVAIAKEEKNGVFYKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLIPAVDAH
Secondary Structure (PSIPRED)
cccccccEEHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccEEEEEcccccccEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHcccccEccccHHHHHHHHHHHHHHHHccccccccEEEEEcccccccEEcc
Coil and Loop (DISEMBL)
MKLLGAFVVTLVVAVAIAKEekngvfykepsrgvnpdeaVAYGAAVQAgvlsgeqdtdaivlldvnplipavdah
Flexible Loop (DISEMBL)
MKLLGAFVVTLVVAVAIakeekngvfykepsrGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLIPAVDAH
Low Complexity Region (SEG)
MKLLGAFVVTLVVAVAIAKEEKNGVFYKEPSRGVNPDEavaygaavqagvLSGEQDTDAIVLLDVNPLIPAVDAH
Disordered region (IsUnstruct)
**LLGAFVVTLVVAVAIAKEEKNGVFYKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLIP*****
Disordered Region (DISOPRED)
*KLLGAFVVTLVVAVAIAKEEKNGVFYKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLIPAVD**
Disordered Region (DISEMBL)
MKLLGAFVVTLVVAVAIAKEEKNGVFYKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLIPAVDAH
Disordered Region (DISPRO)
MKLLGAFVVTLVVAVAIAKEEKNGVFYKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLIPAVDAH
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKLLGAFVVTLVVAVAIAKEEKNGVFYKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLIPAVDAH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	75	2.2.26 [Sep-21-2011]
P29844	656	Heat shock 70 kDa protein	yes	N/A	0.626	0.071	0.851	2e-16
Q16956	667	78 kDa glucose-regulated	N/A	N/A	0.733	0.082	0.689	2e-14
P19208	661	Heat shock 70 kDa protein	N/A	N/A	0.626	0.071	0.744	5e-14
P27420	661	Heat shock 70 kDa protein	yes	N/A	0.626	0.071	0.744	5e-14
Q91883	658	78 kDa glucose-regulated	N/A	N/A	0.733	0.083	0.672	2e-13
P20029	655	78 kDa glucose-regulated	yes	N/A	0.626	0.071	0.744	3e-13
Q0VCX2	655	78 kDa glucose-regulated	yes	N/A	0.626	0.071	0.744	3e-13
P11021	654	78 kDa glucose-regulated	yes	N/A	0.626	0.071	0.744	3e-13
P07823	654	78 kDa glucose-regulated	N/A	N/A	0.733	0.084	0.672	3e-13
Q3S4T7	654	78 kDa glucose-regulated	N/A	N/A	0.626	0.071	0.744	3e-13

>sp|P29844|HSP7C_DROME Heat shock 70 kDa protein cognate 3 OS=Drosophila melanogaster GN=Hsc70-3 PE=2 SV=2

 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/47 (85%), Positives = 43/47 (91%)

Query: 28  KEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLIPAVDA 74
           KEPSRG+NPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPL   ++ 
Sbjct: 382 KEPSRGINPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLTMGIET 428

Probably plays a role in facilitating the assembly of multimeric protein complexes inside the ER.
Drosophila melanogaster (taxid: 7227)

>sp|Q16956|GRP78_APLCA 78 kDa glucose-regulated protein OS=Aplysia californica PE=1 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/58 (68%), Positives = 46/58 (79%), Gaps = 3/58 (5%)

Query: 17  IAKEEKNGVFYKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLIPAVDA 74
           + KE  NG   KEPSRG+NPDEAVAYGAAVQAGVLSGE+DT  +VLLDVNPL   ++ 
Sbjct: 383 LVKEYFNG---KEPSRGINPDEAVAYGAAVQAGVLSGEEDTGDLVLLDVNPLTMGIET 437

Probably plays a role in facilitating the assembly of multimeric protein complexes inside the ER.

Aplysia californica (taxid: 6500)

>sp|P19208|HSP7C_CAEBR Heat shock 70 kDa protein C OS=Caenorhabditis briggsae GN=hsp-3 PE=3 SV=2

 Score = 76.6 bits (187), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/47 (74%), Positives = 40/47 (85%)

Query: 28  KEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLIPAVDA 74
           KEPSRG+NPDEAVAYGAAVQ GV+SGE+DT  IVLLDVNPL   ++ 
Sbjct: 387 KEPSRGINPDEAVAYGAAVQGGVISGEEDTGEIVLLDVNPLTMGIET 433

Probably plays a role in facilitating the assembly of multimeric protein complexes inside the ER.

Caenorhabditis briggsae (taxid: 6238)

>sp|P27420|HSP7C_CAEEL Heat shock 70 kDa protein C OS=Caenorhabditis elegans GN=hsp-3 PE=1 SV=2

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/47 (74%), Positives = 40/47 (85%)

Query: 28  KEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLIPAVDA 74
           KEPSRG+NPDEAVAYGAAVQ GV+SGE+DT  IVLLDVNPL   ++ 
Sbjct: 387 KEPSRGINPDEAVAYGAAVQGGVISGEEDTGEIVLLDVNPLTMGIET 433

Probably plays a role in facilitating the assembly of multimeric protein complexes inside the ER.

Caenorhabditis elegans (taxid: 6239)

>sp|Q91883|GRP78_XENLA 78 kDa glucose-regulated protein OS=Xenopus laevis GN=hspa5 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/58 (67%), Positives = 45/58 (77%), Gaps = 3/58 (5%)

Query: 17  IAKEEKNGVFYKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLIPAVDA 74
           + KE  NG   KEPSRG+NPDEAVAYGAAVQAGVLSG+QDT  +VLLDV PL   ++ 
Sbjct: 375 LVKELFNG---KEPSRGINPDEAVAYGAAVQAGVLSGDQDTGDLVLLDVCPLTLGIET 429

Probably plays a role in facilitating the assembly of multimeric protein complexes inside the ER.

Xenopus laevis (taxid: 8355)

>sp|P20029|GRP78_MOUSE 78 kDa glucose-regulated protein OS=Mus musculus GN=Hspa5 PE=1 SV=3

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/47 (74%), Positives = 40/47 (85%)

Query: 28  KEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLIPAVDA 74
           KEPSRG+NPDEAVAYGAAVQAGVLSG+QDT  +VLLDV PL   ++ 
Sbjct: 383 KEPSRGINPDEAVAYGAAVQAGVLSGDQDTGDLVLLDVCPLTLGIET 429

Probably plays a role in facilitating the assembly of multimeric protein complexes inside the ER, AND MASS SPECTROMETRY.

Mus musculus (taxid: 10090)

>sp|Q0VCX2|GRP78_BOVIN 78 kDa glucose-regulated protein OS=Bos taurus GN=HSPA5 PE=2 SV=1

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/47 (74%), Positives = 40/47 (85%)

Query: 28  KEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLIPAVDA 74
           KEPSRG+NPDEAVAYGAAVQAGVLSG+QDT  +VLLDV PL   ++ 
Sbjct: 383 KEPSRGINPDEAVAYGAAVQAGVLSGDQDTGDLVLLDVCPLTLGIET 429

Probably plays a role in facilitating the assembly of multimeric protein complexes inside the ER.

Bos taurus (taxid: 9913)

>sp|P11021|GRP78_HUMAN 78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/47 (74%), Positives = 40/47 (85%)

Query: 28  KEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLIPAVDA 74
           KEPSRG+NPDEAVAYGAAVQAGVLSG+QDT  +VLLDV PL   ++ 
Sbjct: 382 KEPSRGINPDEAVAYGAAVQAGVLSGDQDTGDLVLLDVCPLTLGIET 428

Probably plays a role in facilitating the assembly of multimeric protein complexes inside the ER.

Homo sapiens (taxid: 9606)

>sp|P07823|GRP78_MESAU 78 kDa glucose-regulated protein OS=Mesocricetus auratus GN=HSPA5 PE=1 SV=1

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/58 (67%), Positives = 45/58 (77%), Gaps = 3/58 (5%)

Query: 17  IAKEEKNGVFYKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLIPAVDA 74
           + KE  NG   KEPSRG+NPDEAVAYGAAVQAGVLSG+QDT  +VLLDV PL   ++ 
Sbjct: 374 LVKEFFNG---KEPSRGINPDEAVAYGAAVQAGVLSGDQDTGDLVLLDVCPLTLGIET 428

Probably plays a role in facilitating the assembly of multimeric protein complexes inside the ER.

Mesocricetus auratus (taxid: 10036)

>sp|Q3S4T7|GRP78_SPETR 78 kDa glucose-regulated protein OS=Spermophilus tridecemlineatus GN=HSPA5 PE=2 SV=1

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/47 (74%), Positives = 40/47 (85%)

Query: 28  KEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLIPAVDA 74
           KEPSRG+NPDEAVAYGAAVQAGVLSG+QDT  +VLLDV PL   ++ 
Sbjct: 382 KEPSRGINPDEAVAYGAAVQAGVLSGDQDTGDLVLLDVCPLTLGIET 428

Probably plays a role in facilitating the assembly of multimeric protein complexes inside the ER.

Spermophilus tridecemlineatus (taxid: 43179)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
116563138	171	heat shock cognate 70 protein [Plodia in	0.733	0.321	0.758	2e-15
27260894	659	heat shock cognate 70 protein [Spodopter	0.733	0.083	0.758	3e-15
111380719	659	heat shock cognate 70 protein [Trichoplu	0.733	0.083	0.758	3e-15
111380717	659	heat shock cognate 70 protein [Trichoplu	0.733	0.083	0.758	3e-15
124013459	660	heat shock cognate 70 [Plodia interpunct	0.733	0.083	0.758	3e-15
392464576	333	heat shock cognate 70, partial [Bicyclus	0.733	0.165	0.758	3e-15
328670877	659	heat shock protein [Helicoverpa armigera	0.733	0.083	0.758	3e-15
188532068	459	heat shock cognate 70 protein [Loxostege	0.626	0.102	0.851	4e-15
389608441	659	heat shock protein cognate 3 [Papilio xu	0.733	0.083	0.758	4e-15
124487968	398	putative heat shock cognate 70 protein [	0.546	0.103	0.975	4e-15

>gi|116563138|gb|ABJ99752.1| heat shock cognate 70 protein [Plodia interpunctella]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/58 (75%), Positives = 48/58 (82%), Gaps = 3/58 (5%)

Query: 17  IAKEEKNGVFYKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLIPAVDA 74
           + KE  NG   KEPSRG+NPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPL   ++ 
Sbjct: 113 LVKEFFNG---KEPSRGINPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLTMGIET 167

Source: Plodia interpunctella

Species: Plodia interpunctella

Genus: Plodia

Family: Pyralidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|27260894|gb|AAN86047.1| heat shock cognate 70 protein [Spodoptera frugiperda]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/58 (75%), Positives = 48/58 (82%), Gaps = 3/58 (5%)

Query: 17  IAKEEKNGVFYKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLIPAVDA 74
           + KE  NG   KEPSRG+NPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPL   ++ 
Sbjct: 376 LVKEFFNG---KEPSRGINPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLTMGIET 430

Source: Spodoptera frugiperda

Species: Spodoptera frugiperda

Genus: Spodoptera

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|111380719|gb|ABH09735.1| heat shock cognate 70 protein [Trichoplusia ni]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/58 (75%), Positives = 48/58 (82%), Gaps = 3/58 (5%)

Query: 17  IAKEEKNGVFYKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLIPAVDA 74
           + KE  NG   KEPSRG+NPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPL   ++ 
Sbjct: 376 LVKEFFNG---KEPSRGINPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLTMGIET 430

Source: Trichoplusia ni

Species: Trichoplusia ni

Genus: Trichoplusia

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|111380717|gb|ABH09734.1| heat shock cognate 70 protein [Trichoplusia ni]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/58 (75%), Positives = 48/58 (82%), Gaps = 3/58 (5%)

Query: 17  IAKEEKNGVFYKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLIPAVDA 74
           + KE  NG   KEPSRG+NPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPL   ++ 
Sbjct: 376 LVKEFFNG---KEPSRGINPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLTMGIET 430

Source: Trichoplusia ni

Species: Trichoplusia ni

Genus: Trichoplusia

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|124013459|gb|ABM88156.1| heat shock cognate 70 [Plodia interpunctella]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/58 (75%), Positives = 48/58 (82%), Gaps = 3/58 (5%)

Query: 17  IAKEEKNGVFYKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLIPAVDA 74
           + KE  NG   KEPSRG+NPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPL   ++ 
Sbjct: 376 LVKEFFNG---KEPSRGINPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLTMGIET 430

Source: Plodia interpunctella

Species: Plodia interpunctella

Genus: Plodia

Family: Pyralidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|392464576|gb|AFM73654.1| heat shock cognate 70, partial [Bicyclus anynana]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/58 (75%), Positives = 48/58 (82%), Gaps = 3/58 (5%)

Query: 17  IAKEEKNGVFYKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLIPAVDA 74
           + KE  NG   KEPSRG+NPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPL   ++ 
Sbjct: 146 LVKEFFNG---KEPSRGINPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLTMGIET 200

Source: Bicyclus anynana

Species: Bicyclus anynana

Genus: Bicyclus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328670877|gb|AEB26315.1| heat shock protein [Helicoverpa armigera]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/58 (75%), Positives = 48/58 (82%), Gaps = 3/58 (5%)

Query: 17  IAKEEKNGVFYKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLIPAVDA 74
           + KE  NG   KEPSRG+NPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPL   ++ 
Sbjct: 376 LVKEFFNG---KEPSRGINPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLTMGIET 430

Source: Helicoverpa armigera

Species: Helicoverpa armigera

Genus: Helicoverpa

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|188532068|gb|ACD63049.1| heat shock cognate 70 protein [Loxostege sticticalis]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/47 (85%), Positives = 43/47 (91%)

Query: 28  KEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLIPAVDA 74
           KEPSRG+NPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPL   ++ 
Sbjct: 211 KEPSRGINPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLTMGIET 257

Source: Loxostege sticticalis

Species: Loxostege sticticalis

Genus: Loxostege

Family: Crambidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389608441|dbj|BAM17830.1| heat shock protein cognate 3 [Papilio xuthus]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/58 (75%), Positives = 48/58 (82%), Gaps = 3/58 (5%)

Query: 17  IAKEEKNGVFYKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLIPAVDA 74
           + KE  NG   KEPSRG+NPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPL   ++ 
Sbjct: 376 LVKEFFNG---KEPSRGINPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLTMGIET 430

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|124487968|gb|ABN12067.1| putative heat shock cognate 70 protein [Maconellicoccus hirsutus]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/41 (97%), Positives = 41/41 (100%)

Query: 28  KEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPL 68
           KEPSRG+NPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPL
Sbjct: 120 KEPSRGINPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPL 160

Source: Maconellicoccus hirsutus

Species: Maconellicoccus hirsutus

Genus: Maconellicoccus

Family: Pseudococcidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
FB|FBgn0001218	656	Hsc70-3 "Heat shock 70-kDa pro	0.613	0.070	0.608	1.6e-09
UNIPROTKB|Q0VCX2	655	HSPA5 "78 kDa glucose-regulate	0.72	0.082	0.473	1.6e-07
UNIPROTKB|F1PIC7	654	HSPA5 "Uncharacterized protein	0.72	0.082	0.473	2.6e-07
WB|WBGene00002007	661	hsp-3 [Caenorhabditis elegans	0.72	0.081	0.491	2.9e-07
UNIPROTKB|P27420	661	hsp-3 "Heat shock 70 kDa prote	0.72	0.081	0.491	2.9e-07
UNIPROTKB|F1N614	600	F1N614 "Uncharacterized protei	0.72	0.09	0.473	3.4e-07
UNIPROTKB|P11021	654	HSPA5 "78 kDa glucose-regulate	0.72	0.082	0.473	5.2e-07
UNIPROTKB|P34935	262	HSPA5 "78 kDa glucose-regulate	0.72	0.206	0.473	5.4e-07
UNIPROTKB|F1RS36	634	HSPA5 "78 kDa glucose-regulate	0.72	0.085	0.473	2.6e-06
UNIPROTKB|Q90593	652	HSPA5 "78 kDa glucose-regulate	0.72	0.082	0.473	2.7e-06

FB|FBgn0001218 Hsc70-3 "Heat shock 70-kDa protein cognate 3" [Drosophila melanogaster (taxid:7227)]

 Score = 142 (55.0 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
 Identities = 28/46 (60%), Positives = 31/46 (67%)

Query:    28 KEPSRGVNPDEXXXXXXXXXXXXLSGEQDTDAIVLLDVNPLIPAVD 73
             KEPSRG+NPDE            LSGEQDTDAIVLLDVNPL   ++
Sbjct:   382 KEPSRGINPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLTMGIE 427

GO:0009408 "response to heat" evidence=ISS;NAS

GO:0016887 "ATPase activity" evidence=NAS

GO:0005783 "endoplasmic reticulum" evidence=IDA;NAS

GO:0030431 "sleep" evidence=TAS

GO:0016246 "RNA interference" evidence=IMP

GO:0005811 "lipid particle" evidence=IDA

GO:0005615 "extracellular space" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0051298 "centrosome duplication" evidence=IMP

UNIPROTKB|Q0VCX2 HSPA5 "78 kDa glucose-regulated protein" [Bos taurus (taxid:9913)]

 Score = 119 (46.9 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
 Identities = 27/57 (47%), Positives = 33/57 (57%)

Query:    17 IAKEEKNGVFYKEPSRGVNPDEXXXXXXXXXXXXLSGEQDTDAIVLLDVNPLIPAVD 73
             + KE  NG   KEPSRG+NPDE            LSG+QDT  +VLLDV PL   ++
Sbjct:   375 LVKEFFNG---KEPSRGINPDEAVAYGAAVQAGVLSGDQDTGDLVLLDVCPLTLGIE 428

GO:0042470 "melanosome" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1PIC7 HSPA5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 119 (46.9 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
 Identities = 27/57 (47%), Positives = 33/57 (57%)

Query:    17 IAKEEKNGVFYKEPSRGVNPDEXXXXXXXXXXXXLSGEQDTDAIVLLDVNPLIPAVD 73
             + KE  NG   KEPSRG+NPDE            LSG+QDT  +VLLDV PL   ++
Sbjct:   374 LVKEFFNG---KEPSRGINPDEAVAYGAAVQAGVLSGDQDTGDLVLLDVCPLTLGIE 427

GO:0051787 "misfolded protein binding" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043027 "cysteine-type endopeptidase inhibitor activity involved in apoptotic process" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0042149 "cellular response to glucose starvation" evidence=IEA

GO:0034663 "endoplasmic reticulum chaperone complex" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0021680 "cerebellar Purkinje cell layer development" evidence=IEA

GO:0021589 "cerebellum structural organization" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0006987 "activation of signaling protein activity involved in unfolded protein response" evidence=IEA

GO:0006983 "ER overload response" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

WB|WBGene00002007 hsp-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 128 (50.1 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 28/57 (49%), Positives = 34/57 (59%)

Query:    17 IAKEEKNGVFYKEPSRGVNPDEXXXXXXXXXXXXLSGEQDTDAIVLLDVNPLIPAVD 73
             + KE  NG   KEPSRG+NPDE            +SGE+DT  IVLLDVNPL   ++
Sbjct:   379 LIKEFFNG---KEPSRGINPDEAVAYGAAVQGGVISGEEDTGEIVLLDVNPLTMGIE 432

GO:0000902 "cell morphogenesis" evidence=IEA

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0042221 "response to chemical stimulus" evidence=ISS

GO:0009306 "protein secretion" evidence=ISS

GO:0006950 "response to stress" evidence=ISS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IEP

GO:0034663 "endoplasmic reticulum chaperone complex" evidence=ISS

GO:0016887 "ATPase activity" evidence=ISS

UNIPROTKB|P27420 hsp-3 "Heat shock 70 kDa protein C" [Caenorhabditis elegans (taxid:6239)]

 Score = 128 (50.1 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 28/57 (49%), Positives = 34/57 (59%)

Query:    17 IAKEEKNGVFYKEPSRGVNPDEXXXXXXXXXXXXLSGEQDTDAIVLLDVNPLIPAVD 73
             + KE  NG   KEPSRG+NPDE            +SGE+DT  IVLLDVNPL   ++
Sbjct:   379 LIKEFFNG---KEPSRGINPDEAVAYGAAVQGGVISGEEDTGEIVLLDVNPLTMGIE 432

GO:0006200 "ATP catabolic process" evidence=ISS

UNIPROTKB|F1N614 F1N614 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 115 (45.5 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
 Identities = 27/57 (47%), Positives = 32/57 (56%)

Query:    17 IAKEEKNGVFYKEPSRGVNPDEXXXXXXXXXXXXLSGEQDTDAIVLLDVNPLIPAVD 73
             + KE  NG   KEPSRG+NPDE            LSG+QDT   VLLDV PL   ++
Sbjct:   321 LVKEFFNG---KEPSRGINPDEAVAYGAAVQAGVLSGDQDTGKPVLLDVCPLTLGIE 374

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|P11021 HSPA5 "78 kDa glucose-regulated protein" [Homo sapiens (taxid:9606)]

 Score = 119 (46.9 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
 Identities = 27/57 (47%), Positives = 33/57 (57%)

Query:    17 IAKEEKNGVFYKEPSRGVNPDEXXXXXXXXXXXXLSGEQDTDAIVLLDVNPLIPAVD 73
             + KE  NG   KEPSRG+NPDE            LSG+QDT  +VLLDV PL   ++
Sbjct:   374 LVKEFFNG---KEPSRGINPDEAVAYGAAVQAGVLSGDQDTGDLVLLDVCPLTLGIE 427

GO:0005524 "ATP binding" evidence=IEA

GO:0006983 "ER overload response" evidence=IEA

GO:0021589 "cerebellum structural organization" evidence=IEA

GO:0021680 "cerebellar Purkinje cell layer development" evidence=IEA

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0030674 "protein binding, bridging" evidence=NAS

GO:0043066 "negative regulation of apoptotic process" evidence=IMP;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009986 "cell surface" evidence=IDA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IDA

GO:0051082 "unfolded protein binding" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA;IMP;TAS

GO:0005509 "calcium ion binding" evidence=TAS

GO:0042149 "cellular response to glucose starvation" evidence=IDA

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0030496 "midbody" evidence=IDA

GO:0051787 "misfolded protein binding" evidence=IDA

GO:0034663 "endoplasmic reticulum chaperone complex" evidence=IDA

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0016887 "ATPase activity" evidence=ISS

GO:0008180 "signalosome" evidence=IDA

GO:0005634 "nucleus" evidence=IMP

GO:0002576 "platelet degranulation" evidence=TAS

GO:0005788 "endoplasmic reticulum lumen" evidence=TAS

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0006987 "activation of signaling protein activity involved in unfolded protein response" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0030168 "platelet activation" evidence=TAS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=TAS

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IDA

GO:0051087 "chaperone binding" evidence=TAS

GO:0030433 "ER-associated protein catabolic process" evidence=TAS

GO:0060904 "regulation of protein folding in endoplasmic reticulum" evidence=TAS

GO:0006200 "ATP catabolic process" evidence=ISS

UNIPROTKB|P34935 HSPA5 "78 kDa glucose-regulated protein" [Sus scrofa (taxid:9823)]

 Score = 119 (46.9 bits), Expect = 5.4e-07, P = 5.4e-07
 Identities = 27/57 (47%), Positives = 33/57 (57%)

Query:    17 IAKEEKNGVFYKEPSRGVNPDEXXXXXXXXXXXXLSGEQDTDAIVLLDVNPLIPAVD 73
             + KE  NG   KEPSRG+NPDE            LSG+QDT  +VLLDV PL   ++
Sbjct:    18 LVKEFFNG---KEPSRGINPDEAVAYGAAVQAGVLSGDQDTGDLVLLDVCPLTLGIE 71

GO:0042470 "melanosome" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1RS36 HSPA5 "78 kDa glucose-regulated protein" [Sus scrofa (taxid:9823)]

 Score = 119 (46.9 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 27/57 (47%), Positives = 33/57 (57%)

Query:    17 IAKEEKNGVFYKEPSRGVNPDEXXXXXXXXXXXXLSGEQDTDAIVLLDVNPLIPAVD 73
             + KE  NG   KEPSRG+NPDE            LSG+QDT  +VLLDV PL   ++
Sbjct:   374 LVKEFFNG---KEPSRGINPDEAVAYGAAVQAGVLSGDQDTGDLVLLDVCPLTLGIE 427

GO:0051787 "misfolded protein binding" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043027 "cysteine-type endopeptidase inhibitor activity involved in apoptotic process" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0042149 "cellular response to glucose starvation" evidence=IEA

GO:0034663 "endoplasmic reticulum chaperone complex" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0021680 "cerebellar Purkinje cell layer development" evidence=IEA

GO:0021589 "cerebellum structural organization" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0006987 "activation of signaling protein activity involved in unfolded protein response" evidence=IEA

GO:0006983 "ER overload response" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q90593 HSPA5 "78 kDa glucose-regulated protein" [Gallus gallus (taxid:9031)]

 Score = 119 (46.9 bits), Expect = 2.7e-06, P = 2.7e-06
 Identities = 27/57 (47%), Positives = 33/57 (57%)

Query:    17 IAKEEKNGVFYKEPSRGVNPDEXXXXXXXXXXXXLSGEQDTDAIVLLDVNPLIPAVD 73
             + KE  NG   KEPSRG+NPDE            LSG+QDT  +VLLDV PL   ++
Sbjct:   372 LVKEFFNG---KEPSRGINPDEAVAYGAAVQAGVLSGDQDTGDLVLLDVCPLTLGIE 425

GO:0005524 "ATP binding" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0006983 "ER overload response" evidence=IEA

GO:0006987 "activation of signaling protein activity involved in unfolded protein response" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0021589 "cerebellum structural organization" evidence=IEA

GO:0021680 "cerebellar Purkinje cell layer development" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0034663 "endoplasmic reticulum chaperone complex" evidence=IEA

GO:0042149 "cellular response to glucose starvation" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0043027 "cysteine-type endopeptidase inhibitor activity involved in apoptotic process" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0051787 "misfolded protein binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009986 "cell surface" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P29844	HSP7C_DROME	No assigned EC number	0.8510	0.6266	0.0716	yes	N/A
P16474	GRP78_YEAST	No assigned EC number	0.6595	0.6266	0.0689	yes	N/A
Q5R4P0	GRP78_PONAB	No assigned EC number	0.7234	0.6266	0.0718	yes	N/A
Q75C78	GRP78_ASHGO	No assigned EC number	0.6875	0.64	0.0712	yes	N/A
Q8H1B3	MD37B_ARATH	No assigned EC number	0.7441	0.5466	0.0607	yes	N/A
A1B4E9	DNAK_PARDP	No assigned EC number	0.6326	0.6266	0.0736	yes	N/A
Q2GF34	DNAK_NEOSM	No assigned EC number	0.6511	0.5733	0.0676	yes	N/A
Q8T869	BIP2_DICDI	No assigned EC number	0.5957	0.6266	0.0714	yes	N/A
O85282	DNAK_EHRSE	No assigned EC number	0.6511	0.5733	0.0676	yes	N/A
P36604	GRP78_SCHPO	No assigned EC number	0.6734	0.6533	0.0739	yes	N/A
Q6FW50	GRP78_CANGA	No assigned EC number	0.6595	0.6266	0.0704	yes	N/A
Q99170	GRP78_YARLI	No assigned EC number	0.6808	0.6266	0.0701	yes	N/A
Q6BZH1	GRP78_DEBHA	No assigned EC number	0.6808	0.6266	0.0688	yes	N/A
P83616	GRP78_ASPNG	No assigned EC number	0.6170	0.6266	0.0699	yes	N/A
B2S0M0	DNAK_BORHD	No assigned EC number	0.6363	0.56	0.0664	yes	N/A
P27420	HSP7C_CAEEL	No assigned EC number	0.7446	0.6266	0.0711	yes	N/A
P06761	GRP78_RAT	No assigned EC number	0.7446	0.6266	0.0718	yes	N/A
Q0VCX2	GRP78_BOVIN	No assigned EC number	0.7446	0.6266	0.0717	yes	N/A
P20029	GRP78_MOUSE	No assigned EC number	0.7446	0.6266	0.0717	yes	N/A
P11021	GRP78_HUMAN	No assigned EC number	0.7446	0.6266	0.0718	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	75
pfam00012	598	pfam00012, HSP70, Hsp70 protein	1e-18
PRK00290	627	PRK00290, dnaK, molecular chaperone DnaK; Provisio	3e-16
PTZ00400	663	PTZ00400, PTZ00400, DnaK-type molecular chaperone;	4e-14
PTZ00009	653	PTZ00009, PTZ00009, heat shock 70 kDa protein; Pro	1e-13
TIGR02350	595	TIGR02350, prok_dnaK, chaperone protein DnaK	1e-13
PRK13411	653	PRK13411, PRK13411, molecular chaperone DnaK; Prov	2e-12
PRK13410	668	PRK13410, PRK13410, molecular chaperone DnaK; Prov	3e-12
CHL00094	621	CHL00094, dnaK, heat shock protein 70	4e-12
PLN03184	673	PLN03184, PLN03184, chloroplast Hsp70; Provisional	3e-11
cd10241	374	cd10241, HSPA5-like_NBD, Nucleotide-binding domain	2e-10
PTZ00186	657	PTZ00186, PTZ00186, heat shock 70 kDa precursor pr	2e-10
COG0443	579	COG0443, DnaK, Molecular chaperone [Posttranslatio	4e-10
cd11733	377	cd11733, HSPA9-like_NBD, Nucleotide-binding domain	2e-09
cd10233	376	cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding	2e-09
cd10234	376	cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding d	2e-09
TIGR01991	599	TIGR01991, HscA, Fe-S protein assembly chaperone H	1e-07
cd11734	373	cd11734, Ssq1_like_NBD, Nucleotide-binding domain	1e-07
PRK05183	616	PRK05183, hscA, chaperone protein HscA; Provisiona	2e-07
cd10235	339	cd10235, HscC_like_NBD, Nucleotide-binding domain	1e-05
cd10170	369	cd10170, HSP70_NBD, Nucleotide-binding domain of t	7e-05
cd10228	381	cd10228, HSPA4_like_NDB, Nucleotide-binding domain	9e-05
cd10237	417	cd10237, HSPA13-like_NBD, Nucleotide-binding domai	1e-04
cd11737	383	cd11737, HSPA4_NBD, Nucleotide-binding domain of H	0.001
cd10236	355	cd10236, HscA_like_NBD, Nucleotide-binding domain	0.004

>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein

 Score = 77.7 bits (192), Expect = 1e-18
 Identities = 32/43 (74%), Positives = 35/43 (81%)

Query: 26  FYKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPL 68
           F KEPS+GVNPDEAVA GAAVQAGVLSG  D   ++LLDV PL
Sbjct: 349 FGKEPSKGVNPDEAVAIGAAVQAGVLSGTFDVKDVLLLDVTPL 391

Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598

>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional

 Score = 70.5 bits (174), Expect = 3e-16
 Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 2/43 (4%)

Query: 26  FYKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPL 68
           F KEP++GVNPDE VA GAA+Q GVL+G  D   ++LLDV PL
Sbjct: 350 FGKEPNKGVNPDEVVAIGAAIQGGVLAG--DVKDVLLLDVTPL 390

Length = 627

>gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional

 Score = 64.5 bits (157), Expect = 4e-14
 Identities = 30/44 (68%), Positives = 35/44 (79%), Gaps = 2/44 (4%)

Query: 25  VFYKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPL 68
           +F KEPS+GVNPDEAVA GAA+QAGVL GE     ++LLDV PL
Sbjct: 390 IFGKEPSKGVNPDEAVAMGAAIQAGVLKGE--IKDLLLLDVTPL 431

Length = 663

>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional

 Score = 63.3 bits (154), Expect = 1e-13
 Identities = 27/43 (62%), Positives = 33/43 (76%), Gaps = 2/43 (4%)

Query: 28  KEPSRGVNPDEAVAYGAAVQAGVLSGEQD--TDAIVLLDVNPL 68
           KEP + +NPDEAVAYGAAVQA +L+GEQ      ++LLDV PL
Sbjct: 359 KEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPL 401

Length = 653

>gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK

 Score = 63.5 bits (155), Expect = 1e-13
 Identities = 26/44 (59%), Positives = 31/44 (70%), Gaps = 2/44 (4%)

Query: 25  VFYKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPL 68
            F KEP++ VNPDE VA GAA+Q GVL G  D   ++LLDV PL
Sbjct: 347 FFGKEPNKSVNPDEVVAIGAAIQGGVLKG--DVKDVLLLDVTPL 388

Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved [Protein fate, Protein folding and stabilization]. Length = 595

>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional

 Score = 60.2 bits (146), Expect = 2e-12
 Identities = 27/41 (65%), Positives = 31/41 (75%), Gaps = 2/41 (4%)

Query: 28  KEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPL 68
           K+P R VNPDEAVA GAA+QAGVL GE     ++LLDV PL
Sbjct: 354 KQPDRSVNPDEAVALGAAIQAGVLGGEVKD--LLLLDVTPL 392

Length = 653

>gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional

 Score = 59.3 bits (144), Expect = 3e-12
 Identities = 25/42 (59%), Positives = 34/42 (80%), Gaps = 4/42 (9%)

Query: 28  KEPSRGVNPDEAVAYGAAVQAGVLSGE-QDTDAIVLLDVNPL 68
           +EP++ VNPDE VA GAA+QAG+L+GE +D   ++LLDV PL
Sbjct: 354 REPNQNVNPDEVVAVGAAIQAGILAGELKD---LLLLDVTPL 392

Length = 668

>gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70

 Score = 59.0 bits (143), Expect = 4e-12
 Identities = 27/41 (65%), Positives = 32/41 (78%), Gaps = 2/41 (4%)

Query: 28  KEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPL 68
           K+P++ VNPDE VA GAAVQAGVL+GE     I+LLDV PL
Sbjct: 354 KKPNQSVNPDEVVAIGAAVQAGVLAGE--VKDILLLDVTPL 392

Length = 621

>gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional

 Score = 56.4 bits (136), Expect = 3e-11
 Identities = 28/41 (68%), Positives = 31/41 (75%), Gaps = 2/41 (4%)

Query: 28  KEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPL 68
           K+P+  VNPDE VA GAAVQAGVL+GE     IVLLDV PL
Sbjct: 391 KDPNVTVNPDEVVALGAAVQAGVLAGE--VSDIVLLDVTPL 429

Length = 673

>gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5 and similar proteins

 Score = 54.6 bits (132), Expect = 2e-10
 Identities = 25/31 (80%), Positives = 26/31 (83%), Gaps = 3/31 (9%)

Query: 19  KEEKNGVFYKEPSRGVNPDEAVAYGAAVQAG 49
           KE  NG   KEPSRG+NPDEAVAYGAAVQAG
Sbjct: 347 KEFFNG---KEPSRGINPDEAVAYGAAVQAG 374

This subfamily includes human HSPA5 (also known as 70-kDa heat shock protein 5, glucose-regulated protein 78/GRP78, and immunoglobulin heavy chain-binding protein/BIP, MIF2; the gene encoding HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p (also known as Grp78p), and related proteins. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. HSPA5 and Kar2p are chaperones of the endoplasmic reticulum (ER). Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Multiple ER DNAJ domain proteins have been identified and may exist in distinct complexes with HSPA5 in various locations in the ER, for example DNAJC3-p58IPK in the lumen. HSPA5-NEFs include SIL1 and an atypical HSP70 family protein HYOU1/ORP150. The ATPase activity of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p. Length = 374

>gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein; Provisional

 Score = 54.3 bits (130), Expect = 2e-10
 Identities = 30/49 (61%), Positives = 32/49 (65%), Gaps = 2/49 (4%)

Query: 20  EEKNGVFYKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPL 68
           EE    F K+P RGVNPDEAVA GAA   GVL G  D   +VLLDV PL
Sbjct: 371 EEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRG--DVKGLVLLDVTPL 417

Length = 657

>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 53.5 bits (129), Expect = 4e-10
 Identities = 27/43 (62%), Positives = 32/43 (74%), Gaps = 2/43 (4%)

Query: 26  FYKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPL 68
           F KEP + +NPDEAVA GAA+QA VLSGE     ++LLDV PL
Sbjct: 333 FGKEPEKSINPDEAVALGAAIQAAVLSGE--VPDVLLLDVIPL 373

Length = 579

>gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9, Escherichia coli DnaK, and similar proteins

 Score = 51.6 bits (124), Expect = 2e-09
 Identities = 21/27 (77%), Positives = 24/27 (88%)

Query: 25  VFYKEPSRGVNPDEAVAYGAAVQAGVL 51
           +F KEPS+GVNPDEAVA GAA+Q GVL
Sbjct: 351 IFGKEPSKGVNPDEAVAIGAAIQGGVL 377

This subgroup includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, and Saccharomyces cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. HSPA9 is involved in multiple processses including mitochondrial import, antigen processing, control of cellular proliferation and differentiation, and regulation of glucose responses. During glucose deprivation-induced cellular stress, HSPA9 plays an important role in the suppression of apoptosis by inhibiting a conformational change in Bax that allow the release of cytochrome c. DnaK modulates the heat shock response in Escherichia coli. It protects E. coli from protein carbonylation, an irreversible oxidative modification that increases during organism aging and bacterial growth arrest. Under severe thermal stress, it functions as part of a bi-chaperone system: the DnaK system and the ring-forming AAA+ chaperone ClpB (Hsp104) system, to promote cell survival. DnaK has also been shown to cooperate with GroEL and the ribosome-associated Escherichia coli Trigger Factor in the proper folding of cytosolic proteins. S. cerevisiae Ssc1p is the major HSP70 chaperone of the mitochondrial matrix, promoting translocation of proteins from the cytosol, across the inner membrane, to the matrix, and their subsequent folding. Ssc1p interacts with Tim44, a peripheral inner membrane protein associated with the TIM23 protein translocase. It is also a subunit of the endoSceI site-specific endoDNase and is required for full endoSceI activity. Ssc1p plays roles in the import of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Ssc1 also participates in translational regulation of cytochrome c oxidase (COX) biogenesis by interacting with Mss51 and Mss51-containing complexes. Length = 377

>gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar proteins

 Score = 51.6 bits (124), Expect = 2e-09
 Identities = 18/25 (72%), Positives = 22/25 (88%)

Query: 28  KEPSRGVNPDEAVAYGAAVQAGVLS 52
           KE ++ +NPDEAVAYGAAVQA +LS
Sbjct: 352 KELNKSINPDEAVAYGAAVQAAILS 376

This subfamily includes human HSPA1A (70-kDa heat shock protein 1A, also known as HSP72; HSPA1; HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat shock protein 1B, also known as HSPA1A; HSP70-2; HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like, also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The genes for these three HSPA1 proteins map in close proximity on the major histocompatibility complex (MHC) class III region on chromosome 6, 6p21.3. This subfamily also includes human HSPA8 (heat shock 70kDa protein 8, also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73; NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human HSPA2 (70-kDa heat shock protein 2, also known as HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human HSPA6 (also known as heat shock 70kDa protein 6 (HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3), human HSPA7 (heat shock 70kDa protein 7 , also known as HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces cerevisiae Stress-Seventy subfamily B/Ssb1p. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Associations of polymorphisms within the MHC-III HSP70 gene locus with longevity, systemic lupus erythematosus, Meniere's disease, noise-induced hearing loss, high-altitude pulmonary edema, and coronary heart disease, have been found. HSPA2 is involved in cancer cell survival, is required for maturation of male gametophytes, and is linked to male infertility. The induction of HSPA6 is a biomarker of cellular stress. HSPA8 participates in the folding and trafficking of client proteins to different subcellular compartments, and in the signal transduction and apoptosis process; it has been shown to protect cardiomyocytes against oxidative stress partly through an interaction with alpha-enolase. S. cerevisiae Ssb1p, is part of the ribosome-associated complex (RAC), it acts as a chaperone for nascent polypeptides, and is important for translation fidelity; Ssb1p is also a [PSI+] prion-curing factor. Length = 376

>gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human HSPA9 and similar proteins

 Score = 51.5 bits (124), Expect = 2e-09
 Identities = 19/26 (73%), Positives = 22/26 (84%)

Query: 26  FYKEPSRGVNPDEAVAYGAAVQAGVL 51
           F KEP++GVNPDE VA GAA+Q GVL
Sbjct: 351 FGKEPNKGVNPDEVVAIGAAIQGGVL 376

This subfamily includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae Stress-seventy subfamily Q protein 1/Ssq1p (also called Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. Length = 376

>gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA

 Score = 46.5 bits (111), Expect = 1e-07
 Identities = 20/44 (45%), Positives = 32/44 (72%)

Query: 25  VFYKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPL 68
           +F +EP   ++PD+ VA GAA+QA +L+G +  + ++LLDV PL
Sbjct: 335 LFGQEPLTDIDPDQVVALGAAIQADLLAGNRIGNDLLLLDVTPL 378

The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK [Protein fate, Protein folding and stabilization]. Length = 599

>gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces cerevisiae Ssq1 and similar proteins

 Score = 46.3 bits (110), Expect = 1e-07
 Identities = 17/27 (62%), Positives = 22/27 (81%)

Query: 25  VFYKEPSRGVNPDEAVAYGAAVQAGVL 51
           +F K+PS+ VNPDEAVA GAA+Q  +L
Sbjct: 347 IFGKKPSKSVNPDEAVALGAAIQGSIL 373

Ssq1p (also called Stress-seventy subfamily Q protein 1, Ssc2p, Ssh1p, mtHSP70 homolog) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial chaperone that is involved in iron-sulfur (Fe/S) center biogenesis. Ssq1p plays a role in the maturation of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Length = 373

>gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional

 Score = 45.6 bits (109), Expect = 2e-07
 Identities = 19/43 (44%), Positives = 29/43 (67%)

Query: 26  FYKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPL 68
           F + P   ++PD+ VA GAA+QA +L+G +    ++LLDV PL
Sbjct: 352 FGRTPLTSIDPDKVVAIGAAIQADILAGNKPDSDMLLLDVIPL 394

Length = 616

>gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia coli HscC and similar proteins

 Score = 40.6 bits (96), Expect = 1e-05
 Identities = 14/24 (58%), Positives = 17/24 (70%)

Query: 26  FYKEPSRGVNPDEAVAYGAAVQAG 49
           F + P   +NPDE VA GAA+QAG
Sbjct: 316 FGRFPLVHLNPDEVVALGAAIQAG 339

This subfamily includes Escherichia coli HscC (also called heat shock cognate protein C, Hsc62, or YbeW) and the the putative DnaK-like protein Escherichia coli ECs0689. It belongs to the heat shock protein 70 (Hsp70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, Hsp70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Two genes in the vicinity of the HscC gene code for potential cochaperones: J-domain containing proteins, DjlB/YbeS and DjlC/YbeV. HscC and its co-chaperone partners may play a role in the SOS DNA damage response. HscC does not appear to require a NEF. Length = 339

>gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family

 Score = 38.4 bits (90), Expect = 7e-05
 Identities = 14/25 (56%), Positives = 19/25 (76%)

Query: 25  VFYKEPSRGVNPDEAVAYGAAVQAG 49
           +F K+P R ++PDEAVA GAA+ A 
Sbjct: 345 LFGKKPLRSIDPDEAVALGAAIYAA 369

HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs. Length = 369

>gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4 and similar proteins

 Score = 38.3 bits (90), Expect = 9e-05
 Identities = 16/28 (57%), Positives = 19/28 (67%)

Query: 25  VFYKEPSRGVNPDEAVAYGAAVQAGVLS 52
           VF KE S  +N DEAVA G A+Q  +LS
Sbjct: 354 VFGKELSTTLNADEAVARGCALQCAMLS 381

This subgroup includes the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), Saccharomyces cerevisiae Sse1p and Sse2p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 381

>gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13 and similar proteins

 Score = 37.8 bits (88), Expect = 1e-04
 Identities = 13/28 (46%), Positives = 20/28 (71%)

Query: 26  FYKEPSRGVNPDEAVAYGAAVQAGVLSG 53
           F K+P+  V+P+ AV  G A+QAG++ G
Sbjct: 376 FGKDPNTSVDPELAVVTGVAIQAGIIGG 403

Human HSPA13 (also called 70-kDa heat shock protein 13, STCH, "stress 70 protein chaperone, microsome-associated, 60kD", "stress 70 protein chaperone, microsome-associated, 60kDa"; the gene encoding HSPA13 maps to 21q11.1) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). STCH contains an NBD but lacks an SBD. STCH may function to regulate cell proliferation and survival, and modulate the TRAIL-mediated cell death pathway. The HSPA13 gene is a candidate stomach cancer susceptibility gene; a mutation in the NBD coding region of HSPA13 has been identified in stomach cancer cells. The NBD of HSPA13 interacts with the ubiquitin-like proteins Chap1 and Chap2, implicating HSPA13 in regulating cell cycle and cell death events. HSPA13 is induced by the Ca2+ ionophore A23187. Length = 417

>gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4

 Score = 35.0 bits (80), Expect = 0.001
 Identities = 17/34 (50%), Positives = 22/34 (64%)

Query: 19  KEEKNGVFYKEPSRGVNPDEAVAYGAAVQAGVLS 52
           KE+ +  F KE S  +N DEAVA G A+Q  +LS
Sbjct: 350 KEKISKFFGKEVSTTLNADEAVARGCALQCAILS 383

Human HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1) responds to acidic pH stress, is involved in the radioadaptive response, is required for normal spermatogenesis and is overexpressed in hepatocellular carcinoma. It participates in a pathway along with NBS1 (Nijmegen breakage syndrome 1, also known as p85 or nibrin), heat shock transcription factor 4b (HDF4b), and HSPA14 (belonging to a different HSP70 subfamily) that induces tumor migration, invasion, and transformation. HSPA4 expression in sperm was increased in men with oligozoospermia, especially in those with varicocele. HSPA4 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383

>gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and similar proteins

 Score = 33.3 bits (77), Expect = 0.004
 Identities = 13/23 (56%), Positives = 17/23 (73%)

Query: 26  FYKEPSRGVNPDEAVAYGAAVQA 48
           F ++P   +NPDE VA GAA+QA
Sbjct: 332 FGQKPLCDINPDEVVAIGAALQA 354

Escherichia coli HscA (heat shock cognate protein A, also called Hsc66), belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HscA's partner J-domain protein is HscB; it does not appear to require a NEF, and has been shown to be induced by cold-shock. The HscA-HscB chaperone/co-chaperone pair is involved in [Fe-S] cluster assembly. Length = 355

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	75
1yuw_A	554	Heat shock cognate 71 kDa protein; chaperone; 2.60	2e-19
3d2f_A	675	Heat shock protein homolog SSE1; nucleotide exchan	7e-19
2kho_A	605	Heat shock protein 70; molecular chaperone, HSP70,	5e-16
2v7y_A	509	Chaperone protein DNAK; HSP70, heat shock protein,	1e-15
3i33_A	404	Heat shock-related 70 kDa protein 2; protein-ADP c	1e-14
3qfu_A	394	78 kDa glucose-regulated protein homolog; HSP70, K	2e-13
1dkg_D	383	Molecular chaperone DNAK; HSP70, GRPE, nucleotide	9e-12

>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Length = 554

 Score = 79.1 bits (196), Expect = 2e-19
 Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 2/43 (4%)

Query: 28  KEPSRGVNPDEAVAYGAAVQAGVLSGEQD--TDAIVLLDVNPL 68
           KE ++ +NPDEAVAYGAAVQA +LSG++      ++LLDV PL
Sbjct: 357 KELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPL 399

>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Length = 675

 Score = 77.7 bits (192), Expect = 7e-19
 Identities = 14/43 (32%), Positives = 19/43 (44%)

Query: 26  FYKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPL 68
           F K  S  +N DEA+A GAA    + S           D++P 
Sbjct: 358 FGKPLSTTLNQDEAIAKGAAFICAIHSPTLRVRPFKFEDIHPY 400

>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Length = 605

 Score = 69.6 bits (171), Expect = 5e-16
 Identities = 28/44 (63%), Positives = 32/44 (72%), Gaps = 2/44 (4%)

Query: 25  VFYKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPL 68
            F KEP + VNPDEAVA GAAVQ GVL+G  D   ++LLDV PL
Sbjct: 356 FFGKEPRKDVNPDEAVAIGAAVQGGVLTG--DVKDVLLLDVTPL 397

>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Length = 509

 Score = 68.4 bits (168), Expect = 1e-15
 Identities = 25/44 (56%), Positives = 31/44 (70%), Gaps = 2/44 (4%)

Query: 25  VFYKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPL 68
              KEP +GVNPDE VA GAA+Q GV++G  +   +VLLDV PL
Sbjct: 325 ELGKEPHKGVNPDEVVAIGAAIQGGVIAG--EVKDVVLLDVTPL 366

>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ... Length = 404

 Score = 65.6 bits (161), Expect = 1e-14
 Identities = 18/27 (66%), Positives = 23/27 (85%)

Query: 28  KEPSRGVNPDEAVAYGAAVQAGVLSGE 54
           KE ++ +NPDEAVAYGAAVQA +L G+
Sbjct: 378 KELNKSINPDEAVAYGAAVQAAILIGD 404

>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Length = 383

 Score = 57.2 bits (139), Expect = 9e-12
 Identities = 20/28 (71%), Positives = 22/28 (78%)

Query: 25  VFYKEPSRGVNPDEAVAYGAAVQAGVLS 52
            F KEP + VNPDEAVA GAAVQ GVL+
Sbjct: 356 FFGKEPRKDVNPDEAVAIGAAVQGGVLT 383

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	75
3d2f_A	675	Heat shock protein homolog SSE1; nucleotide exchan	99.58
4b9q_A	605	Chaperone protein DNAK; HET: ATP; 2.40A {Escherich	99.55
2kho_A	605	Heat shock protein 70; molecular chaperone, HSP70,	99.48
1yuw_A	554	Heat shock cognate 71 kDa protein; chaperone; 2.60	99.47
2v7y_A	509	Chaperone protein DNAK; HSP70, heat shock protein,	99.41
3i33_A	404	Heat shock-related 70 kDa protein 2; protein-ADP c	98.72
3qfu_A	394	78 kDa glucose-regulated protein homolog; HSP70, K	98.66
4gni_A	409	Putative heat shock protein; HSP70-type ATPase, AT	98.49
1dkg_D	383	Molecular chaperone DNAK; HSP70, GRPE, nucleotide	98.44
4ehu_A	276	Activator of 2-hydroxyisocaproyl-COA dehydratase;	98.07
1jce_A	344	ROD shape-determining protein MREB; MBL, actin, HS	97.78
3h1q_A	272	Ethanolamine utilization protein EUTJ; ethanolamin	97.44
2zgy_A	320	Plasmid segregation protein PARM; plasmid partitio	94.42
1q5l_A	135	Chaperone protein DNAK; HSP70, chaperone, heat sho	94.06
3n8e_A	182	Stress-70 protein, mitochondrial; beta-sandwich, h	92.91
1hux_A	270	Activator of (R)-2-hydroxyglutaryl-COA dehydratase	90.41
2fxu_A	375	Alpha-actin-1, actin, alpha skeletal muscle; actin	89.59
2ews_A	287	Pantothenate kinase; PANK, structural genomics, st	86.62
2fsj_A	346	Hypothetical protein TA0583; actin homologs, archa	85.44
2ych_A	377	Competence protein PILM; cell cycle, type IV pilus	84.26

>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*

Probab=99.58  E-value=2e-15  Score=115.60  Aligned_cols=63  Identities=22%  Similarity=0.190  Sum_probs=59.3

Q ss_pred             eeeeHHHHHHHHHHhcCccCCCCCcCCCcchhhhhhhhHHhhhhcCCCCCCceEEEeeeeccceEEe
Q psy13577          8 VVTLVVAVAIAKEEKNGVFYKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLIPAVDA   74 (75)
Q Consensus         8 ~~riP~Vq~~l~~~f~~~~~~~~~~~inpDEaVA~GAAi~Aails~~~~v~~~~l~Dv~p~sLGie~   74 (75)
                      ..|||.||+.|+++|+    +++..++|||||||+|||+||+++++.++++++.+.|++|+|||+++
T Consensus       344 ssriP~v~~~l~~~fg----~~~~~~~nPdeaVA~GAa~~a~~ls~~~~v~~~~l~Dv~p~slgi~~  406 (675)
T 3d2f_A          344 TTRIPTLKQSISEAFG----KPLSTTLNQDEAIAKGAAFICAIHSPTLRVRPFKFEDIHPYSVSYSW  406 (675)
T ss_dssp             GGGSHHHHHHHHHHHT----SCEECCSCTTTHHHHHHHHHHHHTCSSCCCCCCEEEEEECSCEEEEE
T ss_pred             CccChHHHHHHHHhcC----CCccccCCcchHHHHHHHHHHHHhCCCCcccceEEEeeeecceEeee
Confidence            3699999999999996    68889999999999999999999999888999999999999999986

>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D

Probab=99.55  E-value=6.3e-15  Score=111.23  Aligned_cols=60  Identities=45%  Similarity=0.675  Sum_probs=56.5

Q ss_pred             eeeHHHHHHHHHHhcCccCCCCCcCCCcchhhhhhhhHHhhhhcCCCCCCceEEEeeeeccceEEe
Q psy13577          9 VTLVVAVAIAKEEKNGVFYKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLIPAVDA   74 (75)
Q Consensus         9 ~riP~Vq~~l~~~f~~~~~~~~~~~inpDEaVA~GAAi~Aails~~~~v~~~~l~Dv~p~sLGie~   74 (75)
                      .|||.||+.++++|+    +++..++|||||||+|||+||+++++.  ++++.+.|++|+|||+++
T Consensus       344 sriP~v~~~l~~~fg----~~~~~~~nPdeaVA~GAai~a~~l~~~--~~~~~l~dv~p~slgie~  403 (605)
T 4b9q_A          344 TRMPMVQKKVAEFFG----KEPRKDVNPDEAVAIGAAVQGGVLTGD--VKDVLLLDVTPLSLGIET  403 (605)
T ss_dssp             GGSHHHHHHHHHHHT----SCCCSSSCTTTHHHHHHHHHHHHHHTS--SCSEEEECBCSSCEEEEE
T ss_pred             cCchHHHHHHHHHhc----cCcCCCcChhHHHHHhHHHHHHHhcCC--CCceEEEeeeeeEEEEEE
Confidence            699999999999996    688999999999999999999999987  579999999999999986

>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}

Probab=99.48  E-value=2.4e-14  Score=108.10  Aligned_cols=61  Identities=44%  Similarity=0.656  Sum_probs=56.4

Q ss_pred             eeeeHHHHHHHHHHhcCccCCCCCcCCCcchhhhhhhhHHhhhhcCCCCCCceEEEeeeeccceEEe
Q psy13577          8 VVTLVVAVAIAKEEKNGVFYKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLIPAVDA   74 (75)
Q Consensus         8 ~~riP~Vq~~l~~~f~~~~~~~~~~~inpDEaVA~GAAi~Aails~~~~v~~~~l~Dv~p~sLGie~   74 (75)
                      ..|||.||+.++++|+    +++..++|||||||+|||+||+++++.  ++++.+.|++|+|||+++
T Consensus       343 ~srip~v~~~l~~~fg----~~~~~~~npd~aVA~GAa~~a~~l~~~--~~~~~l~dv~p~slgi~~  403 (605)
T 2kho_A          343 QTRMPMVQKKVAEFFG----KEPRKDVNPDEAVAIGAAVQGGVLTGD--VKDVLLLDVTPLSLGIET  403 (605)
T ss_dssp             GGGSHHHHHHHHHHHS----SCCBCSSCTTTHHHHHHHHHHTTTTTS--CCCCCCSBCCCCCEEEEE
T ss_pred             cccChHHHHHHHHhcC----CCcCcCCCcchHHHHHHHHHHHHhcCC--ccCceEEeeeeeeccccc
Confidence            3699999999999996    688899999999999999999999986  678999999999999986

>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*

Probab=99.47  E-value=3.3e-14  Score=106.31  Aligned_cols=63  Identities=43%  Similarity=0.698  Sum_probs=57.8

Q ss_pred             eeeHHHHHHHHHHhcCccCCCCCcCCCcchhhhhhhhHHhhhhcCC--CCCCceEEEeeeeccceEEe
Q psy13577          9 VTLVVAVAIAKEEKNGVFYKEPSRGVNPDEAVAYGAAVQAGVLSGE--QDTDAIVLLDVNPLIPAVDA   74 (75)
Q Consensus         9 ~riP~Vq~~l~~~f~~~~~~~~~~~inpDEaVA~GAAi~Aails~~--~~v~~~~l~Dv~p~sLGie~   74 (75)
                      .|+|.||+.|+++|++   +++..++|||||||+|||+||+.+++.  ++++++.+.|++|+|||+++
T Consensus       341 srip~v~~~l~~~f~~---~~v~~~~np~~aVA~Gaa~~a~~l~~~~~~~~~~~~~~dv~p~slgi~~  405 (554)
T 1yuw_A          341 TRIPKIQKLLQDFFNG---KELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIET  405 (554)
T ss_dssp             GGCHHHHHHHHHHTTT---CCCBCCSCTTTHHHHHHHHHHHHTTSCCCCCTTSSCCCCBCSSCEEEEE
T ss_pred             ccChHHHHHHHHHcCC---CccccCCCchhHHHHHHHHHHHHhcCCccccccceEEEEeeeeEEEEEe
Confidence            6999999999999975   688899999999999999999999884  45789999999999999986

>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}

Probab=99.41  E-value=1.3e-13  Score=101.89  Aligned_cols=60  Identities=47%  Similarity=0.748  Sum_probs=55.7

Q ss_pred             eeeHHHHHHHHHHhcCccCCCCCcCCCcchhhhhhhhHHhhhhcCCCCCCceEEEeeeeccceEEe
Q psy13577          9 VTLVVAVAIAKEEKNGVFYKEPSRGVNPDEAVAYGAAVQAGVLSGEQDTDAIVLLDVNPLIPAVDA   74 (75)
Q Consensus         9 ~riP~Vq~~l~~~f~~~~~~~~~~~inpDEaVA~GAAi~Aails~~~~v~~~~l~Dv~p~sLGie~   74 (75)
                      .|+|.+++.|+++|+    +++....|||||||+|||+||+.+++.  ++++.+.|++|+|||+++
T Consensus       313 s~~p~v~~~l~~~f~----~~~~~~~~p~~aVa~Gaa~~a~~l~~~--~~~~~~~dv~p~slgi~~  372 (509)
T 2v7y_A          313 TRIPAVQEAIKRELG----KEPHKGVNPDEVVAIGAAIQGGVIAGE--VKDVVLLDVTPLSLGIET  372 (509)
T ss_dssp             GGCHHHHHHHHHHHS----SCCBCCSCTTTHHHHHHHHHHHHHHTC--CCCCCCCCBCSSEEEEEE
T ss_pred             ccChHHHHHHHHHhC----CCcCcCCCchhhhHhhHHHHHHHhcCC--ccCceEEEeeccccceee
Confidence            699999999999996    678889999999999999999999886  578999999999999986

>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...

Probab=98.72  E-value=9.5e-09  Score=72.74  Aligned_cols=42  Identities=48%  Similarity=0.675  Sum_probs=38.2

Q ss_pred             eeeHHHHHHHHHHhcCccCCCCCcCCCcchhhhhhhhHHhhhhcC
Q psy13577          9 VTLVVAVAIAKEEKNGVFYKEPSRGVNPDEAVAYGAAVQAGVLSG   53 (75)
Q Consensus         9 ~riP~Vq~~l~~~f~~~~~~~~~~~inpDEaVA~GAAi~Aails~   53 (75)
                      .|+|.+++.|+++|++   .++....|||+|||+|||++|+++++
T Consensus       362 s~~p~l~~~l~~~~~~---~~v~~~~~p~~ava~Gaa~~a~~l~~  403 (404)
T 3i33_A          362 TRIPKIQKLLQDFFNG---KELNKSINPDEAVAYGAAVQAAILIG  403 (404)
T ss_dssp             GGCHHHHHHHHHHTTT---CCCBCSSCTTTHHHHHHHHHHHHHC-
T ss_pred             cccHHHHHHHHHHcCC---CCCCCCcCHHHHHHHHHHHHHHHhcC
Confidence            5899999999999965   78888999999999999999999986

>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}

Probab=98.49  E-value=6.3e-08  Score=68.85  Aligned_cols=43  Identities=23%  Similarity=0.159  Sum_probs=36.4

Q ss_pred             eeeHHHHHHHHHHhcCccCC-CC------CcCCCcchhhhhhhhHHhhhhcCC
Q psy13577          9 VTLVVAVAIAKEEKNGVFYK-EP------SRGVNPDEAVAYGAAVQAGVLSGE   54 (75)
Q Consensus         9 ~riP~Vq~~l~~~f~~~~~~-~~------~~~inpDEaVA~GAAi~Aails~~   54 (75)
                      .|+|.|+++++++|+.   . .+      ...+|||||||+|||++|+.....
T Consensus       355 s~~p~v~~~l~~~f~~---~~~v~~P~~~~~~~~p~~ava~GAa~~~~~~~~~  404 (409)
T 4gni_A          355 SNTPRIAANFRYIFPE---STRILAPSTDPSALNPSELQARGAALQASLIQEH  404 (409)
T ss_dssp             GGCHHHHHHHHHHSCT---TSEEESTTTCTTCCCTTTHHHHHHHHHHHHHHC-
T ss_pred             cccHHHHHHHHHHcCC---ccccccccccCCCcCHHHHHHHHHHHHhhhhhhh
Confidence            5999999999999974   3 12      678999999999999999987654

>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1

Probab=98.44  E-value=1.3e-07  Score=66.53  Aligned_cols=40  Identities=50%  Similarity=0.635  Sum_probs=36.7

Q ss_pred             eeeHHHHHHHHHHhcCccCCCCCcCCCcchhhhhhhhHHhhhhc
Q psy13577          9 VTLVVAVAIAKEEKNGVFYKEPSRGVNPDEAVAYGAAVQAGVLS   52 (75)
Q Consensus         9 ~riP~Vq~~l~~~f~~~~~~~~~~~inpDEaVA~GAAi~Aails   52 (75)
                      .|+|.+++.++++|+    .++....|||++||+|||++|++|+
T Consensus       344 s~~p~l~~~l~~~~~----~~v~~~~~p~~ava~Gaa~~a~~l~  383 (383)
T 1dkg_D          344 TRMPMVQKKVAEFFG----KEPRKDVNPDEAVAIGAAVQGGVLT  383 (383)
T ss_dssp             GGSHHHHHHHHHHHS----SCCBCSSCTTTHHHHHHHHHTTTTC
T ss_pred             cccHHHHHHHHHHhC----CCCCCCcChHHHHHHHHHHHHHhhC
Confidence            699999999999996    5788899999999999999999875

>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A

Probab=98.07  E-value=1.8e-06  Score=58.50  Aligned_cols=42  Identities=26%  Similarity=-0.028  Sum_probs=37.3

Q ss_pred             eeeeeHHHHHHHHHHhcCccCCCCCcCCCcchhhhhhhhHHhhhhc
Q psy13577          7 FVVTLVVAVAIAKEEKNGVFYKEPSRGVNPDEAVAYGAAVQAGVLS   52 (75)
Q Consensus         7 ~~~riP~Vq~~l~~~f~~~~~~~~~~~inpDEaVA~GAAi~Aails   52 (75)
                      -+.|.|.+++.++++|+    +++..+.||++++|+|||++|.-..
T Consensus       215 Gva~n~~lr~~l~~~~g----~~~~~p~~p~~~~A~GAAl~A~~~~  256 (276)
T 4ehu_A          215 GVARNSGIVRAMAREIN----TEIIVPDIPQLTGALGAALYAFDEA  256 (276)
T ss_dssp             GGGGCHHHHHHHHHHHT----SCEECCSSGGGHHHHHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHC----CCeeeCCCcchHHHHHHHHHHHHHH
Confidence            47899999999999996    6888899999999999999997543

>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A

Probab=97.78  E-value=7.9e-06  Score=56.65  Aligned_cols=41  Identities=22%  Similarity=0.120  Sum_probs=36.2

Q ss_pred             eeeHHHHHHHHHHhcCccCCCCCcCCCcchhhhhhhhHHhhhhcC
Q psy13577          9 VTLVVAVAIAKEEKNGVFYKEPSRGVNPDEAVAYGAAVQAGVLSG   53 (75)
Q Consensus         9 ~riP~Vq~~l~~~f~~~~~~~~~~~inpDEaVA~GAAi~Aails~   53 (75)
                      .|+|.+++.|++.|+    .++....||+++||+||+++|..++.
T Consensus       288 s~~p~l~~~l~~~~~----~~v~~~~~p~~ava~Gaa~~a~~~~~  328 (344)
T 1jce_A          288 SLLRGLDTLLQKETG----ISVIRSEEPLTAVAKGAGMVLDKVNI  328 (344)
T ss_dssp             GCSBTHHHHHHHHHS----SCEEECSSTTTHHHHHHHHGGGCHHH
T ss_pred             ccchHHHHHHHHHHC----CCccccCChHHHHHHHHHHHHhChHH
Confidence            599999999999996    56777889999999999999987653

>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}

Probab=97.44  E-value=5.7e-05  Score=50.53  Aligned_cols=37  Identities=16%  Similarity=0.007  Sum_probs=32.8

Q ss_pred             eeeeHHHHHHHHHHhcCccCCCCCcCCCcchhhhhhhhHHh
Q psy13577          8 VVTLVVAVAIAKEEKNGVFYKEPSRGVNPDEAVAYGAAVQA   48 (75)
Q Consensus         8 ~~riP~Vq~~l~~~f~~~~~~~~~~~inpDEaVA~GAAi~A   48 (75)
                      ..|+|.+++.+++.|+    .++....||++++|+|||++|
T Consensus       236 ~a~~~~l~~~l~~~l~----~~v~~~~~p~~a~a~Gaal~a  272 (272)
T 3h1q_A          236 TAYLTGFSEEFSRFLG----KEVQVPIHPLLVTPLGIALFG  272 (272)
T ss_dssp             GGGSTTHHHHHHHHHS----SCCBCCSSGGGHHHHHHHTTC
T ss_pred             ccchhhHHHHHHHHhC----CCccccCChHHHHHHHHHhcC
Confidence            3589999999999996    677788999999999999875

>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A

Probab=94.42  E-value=0.022  Score=39.15  Aligned_cols=32  Identities=9%  Similarity=0.022  Sum_probs=26.4

Q ss_pred             HHHHHHHHhcCccCC--CCCcCCCcchhhhhhhhHHh
Q psy13577         14 AVAIAKEEKNGVFYK--EPSRGVNPDEAVAYGAAVQA   48 (75)
Q Consensus        14 Vq~~l~~~f~~~~~~--~~~~~inpDEaVA~GAAi~A   48 (75)
                      +++.+++.|+.   .  .+....||++|+|+||++++
T Consensus       286 l~~~l~~~~~~---~~~~~~~~~~P~~a~A~G~~~~~  319 (320)
T 2zgy_A          286 ICDAVKKHTQI---RDERFFKTNNSQYDLVNGMYLIG  319 (320)
T ss_dssp             HHHHHHHTSCC---CGGGEECCSCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHhCC---CCCceeeCCCcHHHHHHHHHHhc
Confidence            88999999863   2  46678899999999999875

>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1

Probab=94.06  E-value=0.013  Score=36.57  Aligned_cols=18  Identities=22%  Similarity=0.447  Sum_probs=10.5

Q ss_pred             CCceEEEeeeeccceEEe
Q psy13577         57 TDAIVLLDVNPLIPAVDA   74 (75)
Q Consensus        57 v~~~~l~Dv~p~sLGie~   74 (75)
                      ++++.+.|++|+|||+++
T Consensus        14 ~~d~~l~Dv~p~slGIe~   31 (135)
T 1q5l_A           14 PRGSHMVDVTPLSLGIET   31 (135)
T ss_dssp             -------CCCSSCCCEEE
T ss_pred             eCcEEEEEeecCcEEEEE
Confidence            478999999999999986

>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens}

Probab=92.91  E-value=0.028  Score=36.93  Aligned_cols=17  Identities=24%  Similarity=0.335  Sum_probs=10.5

Q ss_pred             CceEEEeeeeccceEEe
Q psy13577         58 DAIVLLDVNPLIPAVDA   74 (75)
Q Consensus        58 ~~~~l~Dv~p~sLGie~   74 (75)
                      .++.+.||+|+||||++
T Consensus        18 ~~f~l~DV~P~slGie~   34 (182)
T 3n8e_A           18 LYFQSMDVTPLSLGIET   34 (182)
T ss_dssp             ------CBCSSCEEEEC
T ss_pred             CCEEEEEecCCEEEEEE
Confidence            57889999999999986

>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5

Probab=90.41  E-value=0.18  Score=34.15  Aligned_cols=40  Identities=20%  Similarity=-0.054  Sum_probs=32.6

Q ss_pred             eeeeHHHHHHHHHHhcCccCCCCCcCCCcchhhhhhhhHHhhhh
Q psy13577          8 VVTLVVAVAIAKEEKNGVFYKEPSRGVNPDEAVAYGAAVQAGVL   51 (75)
Q Consensus         8 ~~riP~Vq~~l~~~f~~~~~~~~~~~inpDEaVA~GAAi~Aail   51 (75)
                      +.+-|.+++++++.++    .++...-+|+.+.|+|||+.|...
T Consensus       218 ~a~n~~~~~~~~~~lg----~~v~~p~~~~~~~AlGAAl~A~~~  257 (270)
T 1hux_A          218 VAQNYGVRGALEEGLG----VEIKTSPLAQYNGALGAALYAYKK  257 (270)
T ss_dssp             GGGCHHHHHHHHHHHC----SCEECCGGGGGHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHC----CCeEeCCCcchHhHHHHHHHHHHh
Confidence            5678999999999996    566666667778999999998754

>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...

Probab=89.59  E-value=0.17  Score=35.45  Aligned_cols=43  Identities=9%  Similarity=-0.038  Sum_probs=31.9

Q ss_pred             eeeeHHHHHHHHHHhcCccC----CCCCcCCCcchhhhhhhhHHhhh
Q psy13577          8 VVTLVVAVAIAKEEKNGVFY----KEPSRGVNPDEAVAYGAAVQAGV   50 (75)
Q Consensus         8 ~~riP~Vq~~l~~~f~~~~~----~~~~~~inpDEaVA~GAAi~Aai   50 (75)
                      ..++|.++++|++.++....    .+.....||+.++++|++++|..
T Consensus       303 ~s~~pG~~~rl~~el~~~~p~~~~v~v~~~~~p~~~~w~G~si~a~l  349 (375)
T 2fxu_A          303 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL  349 (375)
T ss_dssp             GGCSTTHHHHHHHHHHHHSCTTCCCCEECCTTTTSHHHHHHHHHHHC
T ss_pred             CCCCccHHHHHHHHHHHhCCCCeeEEEEcCCCCCccEEcchHHhhCc
Confidence            46899999999998863211    11224568999999999999983

>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14

Probab=86.62  E-value=0.28  Score=34.21  Aligned_cols=45  Identities=13%  Similarity=-0.057  Sum_probs=34.9

Q ss_pred             cccceeeeeHHHHHHHHHHhcCccCCCCCcCCCcchhhhhhhhHHh
Q psy13577          3 LLGAFVVTLVVAVAIAKEEKNGVFYKEPSRGVNPDEAVAYGAAVQA   48 (75)
Q Consensus         3 ~~~~~~~riP~Vq~~l~~~f~~~~~~~~~~~inpDEaVA~GAAi~A   48 (75)
                      +.|-|+-+.|.+++.++++++. .+.++...-||.-+.|+|||+.+
T Consensus       242 f~Gg~l~~n~~l~~~l~~~~~~-~~~~~~~p~~~~~~gAlGAaL~~  286 (287)
T 2ews_A          242 YIGSSFHNNALLRKVVEDYTVL-RGCKPYYVENGAFSGAIGALYLE  286 (287)
T ss_dssp             EESGGGTTCHHHHHHHHHHHHH-TTCEEEECTTGGGHHHHHHHHTC
T ss_pred             EeCCchhcCHHHHHHHHHHHhh-CCceEEECCCccHHHHHHHHHhC
Confidence            3577788899999999998631 12556667789999999999864

>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*

Probab=85.44  E-value=0.2  Score=34.92  Aligned_cols=33  Identities=18%  Similarity=-0.068  Sum_probs=23.7

Q ss_pred             HHHHHHHHhcCccCCCC-CcCCCcchhhhhhhhHHhh
Q psy13577         14 AVAIAKEEKNGVFYKEP-SRGVNPDEAVAYGAAVQAG   49 (75)
Q Consensus        14 Vq~~l~~~f~~~~~~~~-~~~inpDEaVA~GAAi~Aa   49 (75)
                      +++.+++.|+.   ... ....||++|+|+|+...+.
T Consensus       310 l~~~l~~~~~~---~~i~~~~~~P~~ava~G~~~~~~  343 (346)
T 2fsj_A          310 IGDRFEEIAPG---TLVKIKPEDLQFANALGYRDAAE  343 (346)
T ss_dssp             HGGGGGGGSTT---CBCCCCTTTTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHCcC---cEEeccCCCcHHHHHHHHHHHHh
Confidence            77788888853   222 2356999999999987653

>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}

Probab=84.26  E-value=0.42  Score=32.99  Aligned_cols=29  Identities=28%  Similarity=0.171  Sum_probs=21.0

Q ss_pred             eeeeHHHHHHHHHHhcCccCCCCCcCCCcchhhh
Q psy13577          8 VVTLVVAVAIAKEEKNGVFYKEPSRGVNPDEAVA   41 (75)
Q Consensus         8 ~~riP~Vq~~l~~~f~~~~~~~~~~~inpDEaVA   41 (75)
                      ..|+|.+++.+++.|+    .+... .||+++|+
T Consensus       316 ~s~~p~l~~~l~~~l~----~~v~~-~~P~~~v~  344 (377)
T 2ych_A          316 GSKLRGLASLLTDTLG----VNLEP-VNPWEAVA  344 (377)
T ss_dssp             GGGSTTHHHHHHHHHT----SEEEE-CCGGGGSB
T ss_pred             cccchhHHHHHHHHhC----CCeEe-cCchhhcc
Confidence            3589999999999996    34333 37776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	75
d1dkgd2	198	c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATP	7e-10
d1bupa2	193	c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATP	6e-09
d1jcea2	196	c.55.1.1 (A:141-336) Prokaryotic actin homolog Mre	4e-04

>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Escherichia coli, gene dnaK [TaxId: 562]

 Score = 50.3 bits (120), Expect = 7e-10
 Identities = 20/28 (71%), Positives = 22/28 (78%)

Query: 25  VFYKEPSRGVNPDEAVAYGAAVQAGVLS 52
            F KEP + VNPDEAVA GAAVQ GVL+
Sbjct: 171 FFGKEPRKDVNPDEAVAIGAAVQGGVLT 198

>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 193

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.7 bits (113), Expect = 6e-09
 Identities = 18/25 (72%), Positives = 22/25 (88%)

Query: 28  KEPSRGVNPDEAVAYGAAVQAGVLS 52
           KE ++ +NPDEAVAYGAAVQA +LS
Sbjct: 169 KELNKSINPDEAVAYGAAVQAAILS 193

>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Prokaryotic actin homolog MreB
species: Thermotoga maritima [TaxId: 2336]

 Score = 34.5 bits (78), Expect = 4e-04
 Identities = 7/24 (29%), Positives = 8/24 (33%)

Query: 25  VFYKEPSRGVNPDEAVAYGAAVQA 48
                  R   P  AVA GA +  
Sbjct: 160 ETGISVIRSEEPLTAVAKGAGMVL 183

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	75
d1bupa2	193	Heat shock protein 70kDa, ATPase fragment {Cow (Bo	99.18
d1dkgd2	198	Heat shock protein 70kDa, ATPase fragment {Escheri	99.12
d1jcea2	196	Prokaryotic actin homolog MreB {Thermotoga maritim	98.82
d1huxa_	259	Hydroxyglutaryl-CoA dehydratase component A {Acida	95.99
d2zgya2	163	Plasmid segregation protein ParM {Escherichia coli	86.42

>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.18  E-value=7.6e-12  Score=80.45  Aligned_cols=41  Identities=49%  Similarity=0.670  Sum_probs=38.0

Q ss_pred             eeeHHHHHHHHHHhcCccCCCCCcCCCcchhhhhhhhHHhhhhc
Q psy13577          9 VTLVVAVAIAKEEKNGVFYKEPSRGVNPDEAVAYGAAVQAGVLS   52 (75)
Q Consensus         9 ~riP~Vq~~l~~~f~~~~~~~~~~~inpDEaVA~GAAi~Aails   52 (75)
                      .|+|.||+.++++|++   +++..++|||||||+|||++||+||
T Consensus       153 sr~p~v~~~i~~~f~~---~~i~~~~~p~~aVa~GaA~~aa~ls  193 (193)
T d1bupa2         153 TRIPKIQKLLQDFFNG---KELNKSINPDEAVAYGAAVQAAILS  193 (193)
T ss_dssp             GGCHHHHHHHHHHTTT---CCCBCSSCGGGHHHHHHHHHHHHHC
T ss_pred             cccHHHHHHHHHHcCC---CCCCCCCChHHHHHHHHHHHHHhhC
Confidence            5999999999999986   7788899999999999999999986

>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Escherichia coli, gene dnaK [TaxId: 562]

Probab=99.12  E-value=1.6e-11  Score=79.74  Aligned_cols=40  Identities=50%  Similarity=0.635  Sum_probs=37.4

Q ss_pred             eeeHHHHHHHHHHhcCccCCCCCcCCCcchhhhhhhhHHhhhhc
Q psy13577          9 VTLVVAVAIAKEEKNGVFYKEPSRGVNPDEAVAYGAAVQAGVLS   52 (75)
Q Consensus         9 ~riP~Vq~~l~~~f~~~~~~~~~~~inpDEaVA~GAAi~Aails   52 (75)
                      .|+|.+|+.|+++|+    +++..++|||||||+|||++|++||
T Consensus       159 sr~p~l~~~i~~~f~----~~~~~~~~p~~aVa~GAa~~aa~lS  198 (198)
T d1dkgd2         159 TRMPMVQKKVAEFFG----KEPRKDVNPDEAVAIGAAVQGGVLT  198 (198)
T ss_dssp             GGSHHHHHHHHHHHS----SCCBCSSCTTTHHHHHHHHHTTTTC
T ss_pred             cCCHHHHHHHHHHHC----CCCCCCCChHHHHHHHHHHHHHhcC
Confidence            599999999999997    6788999999999999999999986

>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Prokaryotic actin homolog MreB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.82  E-value=3.9e-10  Score=70.57  Aligned_cols=43  Identities=21%  Similarity=0.068  Sum_probs=37.4

Q ss_pred             eeeeHHHHHHHHHHhcCccCCCCCcCCCcchhhhhhhhHHhhhhcCC
Q psy13577          8 VVTLVVAVAIAKEEKNGVFYKEPSRGVNPDEAVAYGAAVQAGVLSGE   54 (75)
Q Consensus         8 ~~riP~Vq~~l~~~f~~~~~~~~~~~inpDEaVA~GAAi~Aails~~   54 (75)
                      ..|||.|+++++++|+    +++..+.|||||||+|||+++..++..
T Consensus       147 sS~ip~v~~~l~~~fg----~~v~~~~~P~~aVA~GAai~~~~~~~~  189 (196)
T d1jcea2         147 GSLLRGLDTLLQKETG----ISVIRSEEPLTAVAKGAGMVLDKVNIL  189 (196)
T ss_dssp             GGCSBTHHHHHHHHHS----SCEEECSSTTTHHHHHHHHGGGCHHHH
T ss_pred             hhcchhHHHHHHHHHC----cCCccCCChHHHHHHHHHHHHHCHHHH
Confidence            3599999999999997    688899999999999999987666543

>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hydroxyglutaryl-CoA dehydratase component A
species: Acidaminococcus fermentans [TaxId: 905]

Probab=95.99  E-value=0.0018  Score=40.38  Aligned_cols=40  Identities=20%  Similarity=-0.054  Sum_probs=34.2

Q ss_pred             eeeeHHHHHHHHHHhcCccCCCCCcCCCcchhhhhhhhHHhhhh
Q psy13577          8 VVTLVVAVAIAKEEKNGVFYKEPSRGVNPDEAVAYGAAVQAGVL   51 (75)
Q Consensus         8 ~~riP~Vq~~l~~~f~~~~~~~~~~~inpDEaVA~GAAi~Aail   51 (75)
                      +.+.|.+++.+++.++    .++...-+|+++.|+|||++|.-.
T Consensus       217 v~~~~~~~~~l~~~l~----~~i~~~~~~~~agaiGAA~lA~~~  256 (259)
T d1huxa_         217 VAQNYGVRGALEEGLG----VEIKTSPLAQYNGALGAALYAYKK  256 (259)
T ss_dssp             GGGCHHHHHHHHHHHC----SCEECCGGGGGHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHC----CCEEcCCCccHHHHHHHHHHHHHH
Confidence            4578999999999996    678888899999999999998643

>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Plasmid segregation protein ParM
species: Escherichia coli [TaxId: 562]

Probab=86.42  E-value=0.24  Score=28.62  Aligned_cols=36  Identities=8%  Similarity=-0.050  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHhcCccCCCCCcCCCcchhhhhhhhHHh
Q psy13577         12 VVAVAIAKEEKNGVFYKEPSRGVNPDEAVAYGAAVQA   48 (75)
Q Consensus        12 P~Vq~~l~~~f~~~~~~~~~~~inpDEaVA~GAAi~A   48 (75)
                      +.+++.++++|+. .+......-||..|+|+|..+++
T Consensus       127 ~ll~~~lk~~~~~-~~~~v~i~~~P~~A~a~G~~~~g  162 (163)
T d2zgya2         127 ELICDAVKKHTQI-RDERFFKTNNSQYDLVNGMYLIG  162 (163)
T ss_dssp             HHHHHHHHHTSCC-CGGGEECCSCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCC-CCCCeEECCCcHhHHHHHHHHhc
Confidence            4588999999963 01124567899999999988765