Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value Query 107
pfam00211 184
pfam00211, Guanylate_cyc, Adenylate and Guanylate
2e-28 cd07302 177
cd07302, CHD, cyclase homology domain
7e-25 smart00044 194
smart00044, CYCc, Adenylyl- / guanylyl cyclase, ca
4e-21 cd07556 133
cd07556, Nucleotidyl_cyc_III, Class III nucleotidy
8e-19 COG2114 227
COG2114, CyaA, Adenylate cyclase, family 3 (some p
1e-11
>gnl|CDD|201086 pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase catalytic domain
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Score = 101 bits (253), Expect = 2e-28
Identities = 40/80 (50%), Positives = 55/80 (68%)
Query: 28 ILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKE 87
IL+ADIVGFTA+SS +S ELV++LN+L+ RFD L +K+ ++K +GD Y SG P+
Sbjct: 11 ILFADIVGFTALSSRHSPEELVRLLNDLYTRFDELLDKHGVYKVKTIGDAYMAASGLPEP 70
Query: 88 RPDHAILSVHMGLSMVKAIK 107
P HA M L M++AIK
Sbjct: 71 SPAHAQTLAEMALDMLEAIK 90
>gnl|CDD|143636 cd07302, CHD, cyclase homology domain
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Score = 91.9 bits (229), Expect = 7e-25
Identities = 32/80 (40%), Positives = 46/80 (57%)
Query: 28 ILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKE 87
+L+ADIVGFTA+S ELV++LNE F+ FD + E++ K +GD + G P
Sbjct: 4 VLFADIVGFTALSERLGPEELVELLNEYFSAFDEIIERHGGTVDKTIGDAVMAVFGLPGA 63
Query: 88 RPDHAILSVHMGLSMVKAIK 107
DHA +V L M +A+
Sbjct: 64 HEDHAERAVRAALEMQEALA 83
Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide. Length = 177
>gnl|CDD|214485 smart00044, CYCc, Adenylyl- / guanylyl cyclase, catalytic domain
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Score = 82.7 bits (205), Expect = 4e-21
Identities = 33/81 (40%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 28 ILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKE 87
IL++DIVGFT++ ST + ++V +LN+L++RFD++ +++ ++K +GD Y SG P+E
Sbjct: 39 ILFSDIVGFTSLCSTSTPEQVVNLLNDLYSRFDQIIDRHGGYKVKTIGDAYMVASGLPEE 98
Query: 88 R-PDHAILSVHMGLSMVKAIK 107
DHA L L MV+ +K
Sbjct: 99 ALVDHAELIADEALDMVEELK 119
Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes. Length = 194
>gnl|CDD|143637 cd07556, Nucleotidyl_cyc_III, Class III nucleotidyl cyclases
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Score = 75.1 bits (185), Expect = 8e-19
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 28 ILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKE 87
IL+ADIVGFT+++ E ++LNEL RFD L + L+IK +GD + +SG
Sbjct: 4 ILFADIVGFTSLADALGPDEGDELLNELAGRFDSLIRRSGDLKIKTIGDEFMVVSG---- 59
Query: 88 RPDHAILSVHMGLSMVKAI 106
DH +V M +A+
Sbjct: 60 -LDHPAAAVAFAEDMREAV 77
Class III nucleotidyl cyclases are the largest, most diverse group of nucleotidyl cyclases (NC's) containing prokaryotic and eukaryotic proteins. They can be divided into two major groups; the mononucleotidyl cyclases (MNC's) and the diguanylate cyclases (DGC's). The MNC's, which include the adenylate cyclases (AC's) and the guanylate cyclases (GC's), have a conserved cyclase homology domain (CHD), while the DGC's have a conserved GGDEF domain, named after a conserved motif within this subgroup. Their products, cyclic guanylyl and adenylyl nucleotides, are second messengers that play important roles in eukaryotic signal transduction and prokaryotic sensory pathways. Length = 133
>gnl|CDD|225025 COG2114, CyaA, Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms]
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Score = 58.3 bits (141), Expect = 1e-11
Identities = 20/80 (25%), Positives = 39/80 (48%)
Query: 28 ILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKE 87
+L+ADIVG T +S + LV++LN F + ++ +K +GD + + G P
Sbjct: 49 LLFADIVGSTELSESLGDEALVELLNLYFDAVAEVVARHGGRVVKFIGDGFLAVFGRPSP 108
Query: 88 RPDHAILSVHMGLSMVKAIK 107
D ++ + L++ +
Sbjct: 109 LEDAVACALDLQLALRNPLA 128
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 107
d1fx2a_ 235
d.58.29.1 (A:) Receptor-type monomeric adenylyl cy
3e-16 d1azsa_ 190
d.58.29.1 (A:) Adenylyl cyclase VC1, domain C1a {D
2e-14 d1wc1a_ 197
d.58.29.1 (A:) Adenylate cyclase CyaC {Spirulina p
6e-13 d1azsb_ 199
d.58.29.1 (B:) Adenylyl cyclase IIC1, domain C2a {
3e-11
>d1fx2a_ d.58.29.1 (A:) Receptor-type monomeric adenylyl cyclase {Trypanosome (Trypanosoma brucei), different isoform [TaxId: 5691]} Length = 235
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class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleotide cyclase
family: Adenylyl and guanylyl cyclase catalytic domain
domain: Receptor-type monomeric adenylyl cyclase
species: Trypanosome (Trypanosoma brucei), different isoform [TaxId: 5691]
Score = 69.2 bits (168), Expect = 3e-16
Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 1/75 (1%)
Query: 28 ILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKE 87
+++ DI TA+ + + + L +Y+ +K +GD + S +P
Sbjct: 15 LIFTDIESSTALWAA-HPDLMPDAVAAHHRMVRSLIGRYKCYEVKTVGDSFMIASKSPFA 73
Query: 88 RPDHAILSVHMGLSM 102
A L
Sbjct: 74 AVQLAQELQLCFLHH 88
>d1azsa_ d.58.29.1 (A:) Adenylyl cyclase VC1, domain C1a {Dog (Canis familiaris) [TaxId: 9615]} Length = 190
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class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleotide cyclase
family: Adenylyl and guanylyl cyclase catalytic domain
domain: Adenylyl cyclase VC1, domain C1a
species: Dog (Canis familiaris) [TaxId: 9615]
Score = 63.4 bits (153), Expect = 2e-14
Identities = 48/80 (60%), Positives = 61/80 (76%)
Query: 28 ILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKE 87
IL+ADI GFT+++S +A ELV LNELFARFD+L+ + LRIKILGDCYYC+SG P+
Sbjct: 17 ILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLPEA 76
Query: 88 RPDHAILSVHMGLSMVKAIK 107
R DHA V MG+ M++AI
Sbjct: 77 RADHAHCCVEMGMDMIEAIS 96
>d1wc1a_ d.58.29.1 (A:) Adenylate cyclase CyaC {Spirulina platensis [TaxId: 118562]} Length = 197
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class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleotide cyclase
family: Adenylyl and guanylyl cyclase catalytic domain
domain: Adenylate cyclase CyaC
species: Spirulina platensis [TaxId: 118562]
Score = 59.6 bits (143), Expect = 6e-13
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 28 ILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKE 87
IL++DIVGFT +S+ + + ++LNE R + Q K +GD + GAP+E
Sbjct: 10 ILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGTVDKFVGDAIMALYGAPEE 69
Query: 88 RPDH 91
Sbjct: 70 MSPS 73
>d1azsb_ d.58.29.1 (B:) Adenylyl cyclase IIC1, domain C2a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 199
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class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleotide cyclase
family: Adenylyl and guanylyl cyclase catalytic domain
domain: Adenylyl cyclase IIC1, domain C2a
species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 55.3 bits (132), Expect = 3e-11
Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 18/98 (18%)
Query: 28 ILYADIVGFTAISSTYSAS----ELVKILNELFARFDRLSEKYQ---QLRIKILGDCYYC 80
+++A I F + + E +++LNE+ A FD L K + +IK +G Y
Sbjct: 9 VMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGSTYMA 68
Query: 81 ISG-----------APKERPDHAILSVHMGLSMVKAIK 107
+G P+ + H V ++V +
Sbjct: 69 ATGLSAIPSQEHAQEPERQYMHIGTMVEFAYALVGKLD 106
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 107
d1azsa_ 190
Adenylyl cyclase VC1, domain C1a {Dog (Canis famil
99.9 d1azsb_ 199
Adenylyl cyclase IIC1, domain C2a {Rat (Rattus nor
99.87 d1wc1a_ 197
Adenylate cyclase CyaC {Spirulina platensis [TaxId
99.86 d1fx2a_ 235
Receptor-type monomeric adenylyl cyclase {Trypanos
99.78 d1w25a3 162
Response regulator PleD, C-terminal domain {Caulob
89.42
>d1azsa_ d.58.29.1 (A:) Adenylyl cyclase VC1, domain C1a {Dog (Canis familiaris) [TaxId: 9615]}
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class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleotide cyclase
family: Adenylyl and guanylyl cyclase catalytic domain
domain: Adenylyl cyclase VC1, domain C1a
species: Dog (Canis familiaris) [TaxId: 9615]
Probab=99.90 E-value=6e-24 Score=142.24 Aligned_cols=87 Identities=55% Similarity=0.930 Sum_probs=83.3
Q ss_pred CCccccEEEEEEeccChhhhhccCCHHHHHHHHHHHHHHHHHHHHhcCcEEEEEeCcEEEEEeCCCCCCchHHHHHHHHH
Q psy13602 20 PCSQNTWRILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKERPDHAILSVHMG 99 (107)
Q Consensus 20 ~~~~~~vtvlf~di~~ft~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~~g~~~k~iGD~~ma~~g~~~~~~~~a~~a~~~A 99 (107)
.+++++|||||+||+|||.+++.++|++++++||++|+.+++++.+|||+++|++||++|++||.|....+++.+|+++|
T Consensus 9 ~~~~~~Vtvlf~Di~gfT~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gg~~~k~~GD~~~a~f~~~~~~~d~~~~a~~~a 88 (190)
T d1azsa_ 9 IQKHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLPEARADHAHCCVEMG 88 (190)
T ss_dssp EEEEEEEEEEEEEEETHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTEEEEEEETTEEEEEESCSSCCSTHHHHHHHHH
T ss_pred hhcCCcEEEEEEEcCChhHHHHhCCHHHHHHHHHHHHHHHhhcccccCccccccceeEEEEEecCCCccccchhHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred HHHHHHh
Q psy13602 100 LSMVKAI 106 (107)
Q Consensus 100 l~~~~~i 106 (107)
++|++.+
T Consensus 89 ~~~~~~~ 95 (190)
T d1azsa_ 89 MDMIEAI 95 (190)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
>d1azsb_ d.58.29.1 (B:) Adenylyl cyclase IIC1, domain C2a {Rat (Rattus norvegicus) [TaxId: 10116]}
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class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleotide cyclase
family: Adenylyl and guanylyl cyclase catalytic domain
domain: Adenylyl cyclase IIC1, domain C2a
species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.87 E-value=4.1e-22 Score=134.25 Aligned_cols=86 Identities=24% Similarity=0.341 Sum_probs=75.4
Q ss_pred CccccEEEEEEeccChhhhhccCC----HHHHHHHHHHHHHHHHHHHHh---cCcEEEEEeCcEEEEEeCCCCCC-----
Q psy13602 21 CSQNTWRILYADIVGFTAISSTYS----ASELVKILNELFARFDRLSEK---YQQLRIKILGDCYYCISGAPKER----- 88 (107)
Q Consensus 21 ~~~~~vtvlf~di~~ft~l~~~~~----~~~~~~~Ln~~~~~~~~~i~~---~~g~~~k~iGD~~ma~~g~~~~~----- 88 (107)
+.++++||||+||+|||+++++++ |++++++||++|+.|++++.+ |||+++|++||+|||+||+|...
T Consensus 2 ~~~~~vtvlF~Di~gfT~l~~~~~~~~~~~~~~~~Ln~~~~~fd~~~~~~~~~g~~~~k~iGD~~~a~~g~~~~~~~~~a 81 (199)
T d1azsb_ 2 QSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGSTYMAATGLSAIPSQEHA 81 (199)
T ss_dssp CEEEEEEEEEEECTTHHHHCCCCTTTTTTHHHHHHHHHHHHHHHGGGGSGGGTTEEEEEEETTEEEEEESSSCC------
T ss_pred CCCCcEEEEEEEcCCChHHHHhCCcccCHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecCeEEEEecCCCCcccccc
Confidence 468899999999999999998764 789999999999999999877 89999999999999999987532
Q ss_pred ------chHHHHHHHHHHHHHHHh
Q psy13602 89 ------PDHAILSVHMGLSMVKAI 106 (107)
Q Consensus 89 ------~~~a~~a~~~Al~~~~~i 106 (107)
..|+.+++++|++|++.+
T Consensus 82 ~~~~~~~~~~~~av~~a~~~~~~~ 105 (199)
T d1azsb_ 82 QEPERQYMHIGTMVEFAYALVGKL 105 (199)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHhHHHHHHHHHHHHHHh
Confidence 247889999999998764
>d1wc1a_ d.58.29.1 (A:) Adenylate cyclase CyaC {Spirulina platensis [TaxId: 118562]}
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class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleotide cyclase
family: Adenylyl and guanylyl cyclase catalytic domain
domain: Adenylate cyclase CyaC
species: Spirulina platensis [TaxId: 118562]
Probab=99.86 E-value=3.7e-21 Score=128.24 Aligned_cols=84 Identities=27% Similarity=0.423 Sum_probs=76.5
Q ss_pred ccccEEEEEEeccChhhhhccCCHHHHHHHHHHHHHHHHHHHHhcCcEEEEEeCcEEEEEeCCCCCCc--hHHHHHHHHH
Q psy13602 22 SQNTWRILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKERP--DHAILSVHMG 99 (107)
Q Consensus 22 ~~~~vtvlf~di~~ft~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~~g~~~k~iGD~~ma~~g~~~~~~--~~a~~a~~~A 99 (107)
+.+.+||||+||+|||++++.++|++++.+||+||+.+++++.+|||+++|++||++|++|+.|.... .++..++.++
T Consensus 4 e~r~vtvlF~Di~gfT~l~~~~~~~~~~~~l~~~~~~~~~~i~~~~G~v~k~~GD~~~~~f~~~~~~~~~~~~~~a~~~~ 83 (197)
T d1wc1a_ 4 EPRLITILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGTVDKFVGDAIMALYGAPEEMSPSEQVRRAIATA 83 (197)
T ss_dssp EEEEEEEEEEEETTHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESSSSCCCHHHHHHHHHHHH
T ss_pred ccEEEEEEEEEeCCHHHHHHhCCHHHHHHHHHHHHHHHHhhHhhhhhhceeeccceEEEEecCCccccchhhhHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999987643 5677888888
Q ss_pred HHHHHH
Q psy13602 100 LSMVKA 105 (107)
Q Consensus 100 l~~~~~ 105 (107)
..++++
T Consensus 84 ~~~~~~ 89 (197)
T d1wc1a_ 84 RQMLVA 89 (197)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777665
>d1fx2a_ d.58.29.1 (A:) Receptor-type monomeric adenylyl cyclase {Trypanosome (Trypanosoma brucei), different isoform [TaxId: 5691]}
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class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleotide cyclase
family: Adenylyl and guanylyl cyclase catalytic domain
domain: Receptor-type monomeric adenylyl cyclase
species: Trypanosome (Trypanosoma brucei), different isoform [TaxId: 5691]
Probab=99.78 E-value=3.1e-19 Score=122.21 Aligned_cols=80 Identities=15% Similarity=0.130 Sum_probs=67.5
Q ss_pred CCCccccEEEEEEeccChhhhhccCCHHHHHHHHHHHHHHHHHHHHhcCcEEEEEeCcEEEEEeCCCCCCchHHHHHHHH
Q psy13602 19 CPCSQNTWRILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCISGAPKERPDHAILSVHM 98 (107)
Q Consensus 19 ~~~~~~~vtvlf~di~~ft~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~~g~~~k~iGD~~ma~~g~~~~~~~~a~~a~~~ 98 (107)
.....+++||||+||+|||.+++.. |+++..+|++|+..+++++.+|+|+++|++||++|++||.|....++|..+.++
T Consensus 6 p~~~~~~vtilF~DI~gfT~l~e~~-p~~~~~~l~~~~~~~~~~i~~~~G~~~k~~GD~~l~~F~~p~~a~~~A~~~q~~ 84 (235)
T d1fx2a_ 6 PKEPTDPVTLIFTDIESSTALWAAH-PDLMPDAVAAHHRMVRSLIGRYKCYEVKTVGDSFMIASKSPFAAVQLAQELQLC 84 (235)
T ss_dssp CCCTTSCEEEEEEEETTHHHHHHHC-TTTHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESCHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEeccChHHHHHhC-HHHHHHHHHHHHHHHHHHHHHcCCEEEEecCCcEEEeeCCCchHHHHHHHHHHH
Confidence 3455788999999999999999875 578999999999999999999999999999999999999877644444444333
Q ss_pred H
Q psy13602 99 G 99 (107)
Q Consensus 99 A 99 (107)
+
T Consensus 85 ~ 85 (235)
T d1fx2a_ 85 F 85 (235)
T ss_dssp H
T ss_pred H
Confidence 3
>d1w25a3 d.58.29.2 (A:294-455) Response regulator PleD, C-terminal domain {Caulobacter crescentus [TaxId: 155892]}
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class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleotide cyclase
family: GGDEF domain
domain: Response regulator PleD, C-terminal domain
species: Caulobacter crescentus [TaxId: 155892]
Probab=89.42 E-value=1.2 Score=26.13 Aligned_cols=59 Identities=20% Similarity=0.210 Sum_probs=43.6
Q ss_pred cccEEEEEEeccChhhhhccCCHHHHHHHHHHHHHHHHHHHHhcCcEEEEEeCcEEEEEe
Q psy13602 23 QNTWRILYADIVGFTAISSTYSASELVKILNELFARFDRLSEKYQQLRIKILGDCYYCIS 82 (107)
Q Consensus 23 ~~~vtvlf~di~~ft~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~~g~~~k~iGD~~ma~~ 82 (107)
....+++..||.+|..+-+..+.+..-.+|..+-+.+...+...+ .+-++-||.+.++.
T Consensus 25 ~~~~~l~~i~id~~~~in~~~G~~~~d~ll~~~a~~l~~~~~~~d-~~~R~~~~~F~il~ 83 (162)
T d1w25a3 25 GDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAID-LPCRYGGEEFVVIM 83 (162)
T ss_dssp SCCCEEEEEEETTHHHHHHHSCHHHHHHHHHHHHHHHHHTSCTTS-EEEECSSSEEEEEE
T ss_pred CCCEEEEEeccccchhccccccccccchhhhhhhhhhhhccCCcc-eeeecCCCeEEEEe
Confidence 356789999999999999999887665666666555555554433 57778888887766
