Psyllid ID: psy13607

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
MKHIIKDPNVRDDRCRRCKEKAETIQHITSGCSAMSQTEYLHRHNQVAAIIHQNISSNLKLIDEKTPYYKYEPPPVIETAKYTVYYDRTIMTDKTIPNNRPDIVVHDKERRMALLVDIAIPNTHNMESTVVLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIICQESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLDLDSGKLDFNVVLN
cccccccccccccccccccccccHHHHHHccccccccccccccccEEEEEEEccHHHHHHHHHHccccccccccEEEEccccHHHHHcccccEEEcccccccccccHHHHHHHHHHHHHccccccccEEEEEcHHHHHHHcccccccccccccccccccHHHHHHHHcccccccEEEEEccccccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccEEEEcEEccc
ccEEEEccccccccccccccHEEEEEEEccccccccccccccccccEEEEEEEcccHHHHHHHHHHHcccccccccEEEEEEEcccccHHHHHHHHHccccEEEEcHHHHHHHHHHHccccEEHEHHHHHcccHHHHHHccccEEEEEcccccccccccHHHHHHHHcccEEEEEEEEcccccccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccEEEEcccEccc
mkhiikdpnvrddrCRRCKEKAETIQHITSGCSAMSQTEYLHRHNQVAAIIHQNISSNlklidektpyykyepppvietakytvyydrtimtdktipnnrpdivvhDKERRMALLVDiaipnthnmeSTVVLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEEsvdagaiicqesvpiyprdteeSLSERVKSAEHKAYPRALELVATERVKLdldsgkldfnvvln
mkhiikdpnvrddrcRRCKEKAETIQHITSGCSAMSQTEYLHRHNQVAAIIHQNISSNLKLIDEKTpyykyepppvietAKYTVYYDRTimtdktipnnrpdivvHDKERRMALLVDiaipnthnmeSTVVLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIICQESVPIYPRDTEESLSERVKsaehkaypralelvATERvkldldsgkldfnvvln
MKHIIKDPNVRDDRCRRCKEKAETIQHITSGCSAMSQTEYLHRHNQVAAIIHQNISSNLKLIDektpyykyepppVIETAKYTVYYDRTIMTDKTIPNNRPDIVVHDKERRMALLVDIAIPNTHNMESTVVLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIICQESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLDLDSGKLDFNVVLN
***********************TIQHITSGCSAMSQTEYLHRHNQVAAIIHQNISSNLKLIDEKTPYYKYEPPPVIETAKYTVYYDRTIMTDKTIPNNRPDIVVHDKERRMALLVDIAIPNTHNMESTVVLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIICQESVPIY**********************ALELVATERVKLDLDSGKLDFN****
*KHI***PNVRDDRCRRCKEKAETIQHITSGCSAMS*****HRHNQVAAIIHQNISSNLKLIDEKTPYYKYEPPPVIETAKYTVYYDRTIMTDKTIPNNRPDIVVHDKERRMALLVDIAIPNTHNMESTVVLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIICQESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLDLDSGKLDFNVVL*
MKHIIKDPNVRDDRCRRCKEKAETIQHITSGCSAMSQTEYLHRHNQVAAIIHQNISSNLKLIDEKTPYYKYEPPPVIETAKYTVYYDRTIMTDKTIPNNRPDIVVHDKERRMALLVDIAIPNTHNMESTVVLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIICQESVPIYP***************HKAYPRALELVATERVKLDLDSGKLDFNVVLN
*KHIIKDPNVRDDRCRRCKEKAETIQHITSGCSA*SQTEYLHRHNQVAAIIHQNISSNLKLIDEKTPYYKYEPPPVIETAKYTVYYDRTIMTDKTIPNNRPDIVVHDKERRMALLVDIAIPNTHNMESTVVLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIICQESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLDLDSGKLDFNVVL*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKHIIKDPNVRDDRCRRCKEKAETIQHITSGCSAMSQTEYLHRHNQVAAIIHQNISSNLKLIDEKTPYYKYEPPPVIETAKYTVYYDRTIMTDKTIPNNRPDIVVHDKERRMALLVDIAIPNTHNMESTVVLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIICQESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLDLDSGKLDFNVVLN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query245 2.2.26 [Sep-21-2011]
P218721003 Trifunctional purine bios yes N/A 0.436 0.106 0.620 8e-34
Q59A321010 Trifunctional purine bios yes N/A 0.412 0.1 0.653 5e-33
P221021010 Trifunctional purine bios yes N/A 0.436 0.105 0.611 3e-32
Q647371010 Trifunctional purine bios yes N/A 0.436 0.105 0.611 5e-32
Q262551371 Trifunctional purine bios N/A N/A 0.542 0.097 0.486 6e-31
P009671353 Trifunctional purine bios yes N/A 0.383 0.069 0.574 3e-29
P163401364 Trifunctional purine bios yes N/A 0.363 0.065 0.584 5e-27
P08179212 Phosphoribosylglycinamide N/A N/A 0.444 0.514 0.403 4e-21
P43846212 Phosphoribosylglycinamide yes N/A 0.444 0.514 0.394 8e-20
Q8CT28188 Phosphoribosylglycinamide yes N/A 0.375 0.489 0.444 3e-18
>sp|P21872|PUR2_CHICK Trifunctional purine biosynthetic protein adenosine-3 OS=Gallus gallus GN=GART PE=2 SV=1 Back     alignment and function desciption
 Score =  144 bits (362), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 67/108 (62%), Positives = 87/108 (80%), Gaps = 1/108 (0%)

Query: 131  VLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIIC 190
            +L G FV +W GK++NIHP+LLP FKG +AH+  L+AGVRVTGCTVHFV E VDAGAII 
Sbjct: 894  ILSGPFVKKWEGKILNIHPSLLPSFKGANAHKLVLEAGVRVTGCTVHFVAEEVDAGAIIF 953

Query: 191  QESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLDLDSGKL 238
            QE+VP+   DT E+LSERVK AEH+A+P AL+LVA+  V++  ++GK+
Sbjct: 954  QEAVPVKIGDTVETLSERVKEAEHRAFPAALQLVASGAVQVG-EAGKI 1000

Gallus gallus (taxid: 9031)
EC: 2EC: .EC: 1EC: .EC: 2EC: .EC: 2
>sp|Q59A32|PUR2_BOVIN Trifunctional purine biosynthetic protein adenosine-3 OS=Bos taurus GN=GART PE=2 SV=1 Back     alignment and function description
>sp|P22102|PUR2_HUMAN Trifunctional purine biosynthetic protein adenosine-3 OS=Homo sapiens GN=GART PE=1 SV=1 Back     alignment and function description
>sp|Q64737|PUR2_MOUSE Trifunctional purine biosynthetic protein adenosine-3 OS=Mus musculus GN=Gart PE=2 SV=3 Back     alignment and function description
>sp|Q26255|PUR2_CHITE Trifunctional purine biosynthetic protein adenosine-3 OS=Chironomus tentans GN=GART PE=3 SV=1 Back     alignment and function description
>sp|P00967|PUR2_DROME Trifunctional purine biosynthetic protein adenosine-3 OS=Drosophila melanogaster GN=ade3 PE=1 SV=2 Back     alignment and function description
>sp|P16340|PUR2_DROPS Trifunctional purine biosynthetic protein adenosine-3 OS=Drosophila pseudoobscura pseudoobscura GN=ade3 PE=3 SV=2 Back     alignment and function description
>sp|P08179|PUR3_ECOLI Phosphoribosylglycinamide formyltransferase OS=Escherichia coli (strain K12) GN=purN PE=1 SV=1 Back     alignment and function description
>sp|P43846|PUR3_HAEIN Phosphoribosylglycinamide formyltransferase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=purN PE=3 SV=1 Back     alignment and function description
>sp|Q8CT28|PUR3_STAES Phosphoribosylglycinamide formyltransferase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=purN PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query245
189240108 999 PREDICTED: similar to glycinamide ribonu 0.428 0.105 0.676 8e-37
46849393 999 glycinamide ribonucleotide synthetase-am 0.428 0.105 0.685 9e-37
390349450 1463 PREDICTED: trifunctional purine biosynth 0.412 0.069 0.663 4e-36
291227340 1023 PREDICTED: phosphoribosylglycinamide for 0.428 0.102 0.676 5e-36
46849337 990 glycinamide ribonucleotide synthetase-am 0.457 0.113 0.646 2e-35
46849407 1010 glycinamide ribonucleotide synthetase-am 0.428 0.103 0.666 3e-35
156376522 1022 predicted protein [Nematostella vectensi 0.444 0.106 0.627 3e-35
46849351 991 glycinamide ribonucleotide synthetase-am 0.457 0.113 0.646 4e-35
46849437 992 glycinamide ribonucleotide synthetase-am 0.453 0.111 0.633 5e-35
405958019 972 Trifunctional purine biosynthetic protei 0.412 0.103 0.663 5e-35
>gi|189240108|ref|XP_972976.2| PREDICTED: similar to glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase [Tribolium castaneum] gi|270011705|gb|EFA08153.1| hypothetical protein TcasGA2_TC005772 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  159 bits (403), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 71/105 (67%), Positives = 89/105 (84%)

Query: 131 VLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIIC 190
           +L GEF  +W+GKLINIHPALLPLFKG HA +QAL+AGVR++GCTVHFVEE+VD G II 
Sbjct: 889 ILTGEFTAKWKGKLINIHPALLPLFKGTHAQKQALEAGVRISGCTVHFVEEAVDGGHIIT 948

Query: 191 QESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLDLDS 235
           QE+VPI   DTEE+L+ER+K+AEHKA+PRALE VA  +V++  D+
Sbjct: 949 QEAVPIELDDTEETLTERIKTAEHKAFPRALEWVAKGKVRIGEDN 993

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|46849393|dbj|BAD17906.1| glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase [Lepisosteus osseus] Back     alignment and taxonomy information
>gi|390349450|ref|XP_785897.3| PREDICTED: trifunctional purine biosynthetic protein adenosine-3-like isoform 2 [Strongylocentrotus purpuratus] Back     alignment and taxonomy information
>gi|291227340|ref|XP_002733644.1| PREDICTED: phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase-like [Saccoglossus kowalevskii] Back     alignment and taxonomy information
>gi|46849337|dbj|BAD17878.1| glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase [Protopterus annectens] Back     alignment and taxonomy information
>gi|46849407|dbj|BAD17913.1| glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase [Amia calva] Back     alignment and taxonomy information
>gi|156376522|ref|XP_001630409.1| predicted protein [Nematostella vectensis] gi|156217429|gb|EDO38346.1| predicted protein [Nematostella vectensis] Back     alignment and taxonomy information
>gi|46849351|dbj|BAD17885.1| glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase [Lepidosiren paradoxa] Back     alignment and taxonomy information
>gi|46849437|dbj|BAD17928.1| glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase [Polypterus ornatipinnis] Back     alignment and taxonomy information
>gi|405958019|gb|EKC24188.1| Trifunctional purine biosynthetic protein adenosine-3 [Crassostrea gigas] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query245
ZFIN|ZDB-GENE-000616-141017 gart "phosphoribosylglycinamid 0.436 0.105 0.620 1.7e-31
UNIPROTKB|Q59A321010 GART "Trifunctional purine bio 0.751 0.182 0.43 5.9e-31
UNIPROTKB|I3LH111013 GART "Uncharacterized protein" 0.751 0.181 0.425 5.9e-31
UNIPROTKB|I3LP371048 GART "Uncharacterized protein" 0.751 0.175 0.425 6.3e-31
UNIPROTKB|A0A5471003 GART "Glycinamide ribonucleoti 0.436 0.106 0.620 7.4e-31
UNIPROTKB|P218721003 GART "Trifunctional purine bio 0.436 0.106 0.620 7.4e-31
UNIPROTKB|F1P3N91005 GART "Trifunctional purine bio 0.436 0.106 0.620 7.5e-31
UNIPROTKB|J9NUS5988 J9NUS5 "Uncharacterized protei 0.751 0.186 0.435 9.3e-31
UNIPROTKB|J9P7I41011 GART "Uncharacterized protein" 0.751 0.181 0.435 9.7e-31
UNIPROTKB|F1PTG81047 GART "Uncharacterized protein" 0.751 0.175 0.435 1e-30
ZFIN|ZDB-GENE-000616-14 gart "phosphoribosylglycinamide formyltransferase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 357 (130.7 bits), Expect = 1.7e-31, P = 1.7e-31
 Identities = 67/108 (62%), Positives = 87/108 (80%)

Query:   131 VLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIIC 190
             +L G FV +W GK++NIHP+LLP FKG++A +QAL AGVRVTGC+VHFV E VDAGAI+ 
Sbjct:   903 ILTGPFVRKWSGKMLNIHPSLLPSFKGVNAQKQALQAGVRVTGCSVHFVAEDVDAGAIVV 962

Query:   191 QESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLDLDSGKL 238
             QE+VP+   D+EESLSER++ AEH+A+P ALELV++  VKL  D G +
Sbjct:   963 QEAVPVLVTDSEESLSERIREAEHRAFPAALELVSSGAVKLR-DDGHI 1009
GO:0046872 "metal ion binding" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
GO:0004637 "phosphoribosylamine-glycine ligase activity" evidence=IEA
GO:0004644 "phosphoribosylglycinamide formyltransferase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0006189 "'de novo' IMP biosynthetic process" evidence=IEA
GO:0009113 "purine nucleobase biosynthetic process" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0008168 "methyltransferase activity" evidence=IEA
GO:0016742 "hydroxymethyl-, formyl- and related transferase activity" evidence=IEA
GO:0004641 "phosphoribosylformylglycinamidine cyclo-ligase activity" evidence=IEA
GO:0009058 "biosynthetic process" evidence=IEA
GO:0009790 "embryo development" evidence=IMP
GO:0043010 "camera-type eye development" evidence=IMP
GO:0043473 "pigmentation" evidence=IMP
GO:0016740 "transferase activity" evidence=IEA
UNIPROTKB|Q59A32 GART "Trifunctional purine biosynthetic protein adenosine-3" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|I3LH11 GART "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LP37 GART "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|A0A547 GART "Glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P21872 GART "Trifunctional purine biosynthetic protein adenosine-3" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P3N9 GART "Trifunctional purine biosynthetic protein adenosine-3" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|J9NUS5 J9NUS5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P7I4 GART "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1PTG8 GART "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q64737PUR2_MOUSE2, ., 1, ., 2, ., 20.61110.43670.1059yesN/A
P22102PUR2_HUMAN2, ., 1, ., 2, ., 20.61110.43670.1059yesN/A
P21872PUR2_CHICK2, ., 1, ., 2, ., 20.62030.43670.1066yesN/A
Q59A32PUR2_BOVIN2, ., 1, ., 2, ., 20.65340.41220.1yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query245
PRK05647200 PRK05647, purN, phosphoribosylglycinamide formyltr 5e-54
cd08645183 cd08645, FMT_core_GART, Phosphoribosylglycinamide 5e-52
COG0299200 COG0299, PurN, Folate-dependent phosphoribosylglyc 2e-49
TIGR00639190 TIGR00639, PurN, phosphoribosylglycinamide formylt 7e-42
pfam00551181 pfam00551, Formyl_trans_N, Formyl transferase 5e-37
cd08369173 cd08369, FMT_core, Formyltransferase, catalytic co 2e-26
PLN02331207 PLN02331, PLN02331, phosphoribosylglycinamide form 1e-22
cd08648196 cd08648, FMT_core_Formyl-FH4-Hydrolase_C, Formylte 5e-22
PLN02828268 PLN02828, PLN02828, formyltetrahydrofolate deformy 3e-19
COG0788287 COG0788, PurU, Formyltetrahydrofolate hydrolase [N 2e-18
TIGR00655280 TIGR00655, PurU, formyltetrahydrofolate deformylas 3e-16
cd08653152 cd08653, FMT_core_like_3, Formyl transferase catal 2e-14
PRK06027286 PRK06027, purU, formyltetrahydrofolate deformylase 2e-13
cd08646204 cd08646, FMT_core_Met-tRNA-FMT_N, Methionyl-tRNA f 3e-12
PRK13011286 PRK13011, PRK13011, formyltetrahydrofolate deformy 3e-12
PLN02285334 PLN02285, PLN02285, methionyl-tRNA formyltransfera 5e-12
PRK13010289 PRK13010, purU, formyltetrahydrofolate deformylase 5e-12
COG0223 307 COG0223, Fmt, Methionyl-tRNA formyltransferase [Tr 4e-11
TIGR00460 313 TIGR00460, fmt, methionyl-tRNA formyltransferase 7e-11
cd08651180 cd08651, FMT_core_like_4, Formyl transferase catal 6e-10
cd08822192 cd08822, FMT_core_like_2, Formyl transferase catal 2e-09
PRK00005 309 PRK00005, fmt, methionyl-tRNA formyltransferase; R 2e-09
cd08644203 cd08644, FMT_core_ArnA_N, ArnA, N-terminal formylt 2e-09
PRK06988 312 PRK06988, PRK06988, putative formyltransferase; Pr 4e-09
cd08649166 cd08649, FMT_core_NRPS_like, N-terminal formyl tra 9e-08
cd08823177 cd08823, FMT_core_like_5, Formyl transferase catal 2e-07
PRK08125 660 PRK08125, PRK08125, bifunctional UDP-glucuronic ac 6e-07
cd08820173 cd08820, FMT_core_like_6, Formyl transferase catal 2e-06
cd08647203 cd08647, FMT_core_FDH_N, 10-formyltetrahydrofolate 4e-05
PRK07579245 PRK07579, PRK07579, hypothetical protein; Provisio 6e-05
>gnl|CDD|235544 PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed Back     alignment and domain information 
 Score =  172 bits (438), Expect = 5e-54
 Identities = 57/110 (51%), Positives = 75/110 (68%), Gaps = 7/110 (6%)

Query: 130 VVLCG-------EFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEES 182
           VVL G        FV+ + G++INIHP+LLP F G+H H QAL+AGV+V GCTVHFV+E 
Sbjct: 84  VVLAGFMRILGPTFVSAYEGRIINIHPSLLPSFPGLHTHEQALEAGVKVHGCTVHFVDEG 143

Query: 183 VDAGAIICQESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLD 232
           +D G II Q +VP+   DTEESL+ RV   EH+ YP  ++  A  R+KL+
Sbjct: 144 LDTGPIIAQAAVPVLAGDTEESLAARVLEQEHRLYPLVVKWFAEGRLKLE 193

Length = 200
>gnl|CDD|187714 cd08645, FMT_core_GART, Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART) Back     alignment and domain information
>gnl|CDD|223376 COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|161973 TIGR00639, PurN, phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent Back     alignment and domain information
>gnl|CDD|144222 pfam00551, Formyl_trans_N, Formyl transferase Back     alignment and domain information
>gnl|CDD|187712 cd08369, FMT_core, Formyltransferase, catalytic core domain Back     alignment and domain information
>gnl|CDD|177965 PLN02331, PLN02331, phosphoribosylglycinamide formyltransferase Back     alignment and domain information
>gnl|CDD|187717 cd08648, FMT_core_Formyl-FH4-Hydrolase_C, Formyltetrahydrofolate deformylase (Formyl-FH4 hydrolase), C-terminal hydrolase domain Back     alignment and domain information
>gnl|CDD|178422 PLN02828, PLN02828, formyltetrahydrofolate deformylase Back     alignment and domain information
>gnl|CDD|223859 COG0788, PurU, Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|233074 TIGR00655, PurU, formyltetrahydrofolate deformylase Back     alignment and domain information
>gnl|CDD|187721 cd08653, FMT_core_like_3, Formyl transferase catalytic core domain found in a group of proteins with unknown functions Back     alignment and domain information
>gnl|CDD|235676 PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>gnl|CDD|187715 cd08646, FMT_core_Met-tRNA-FMT_N, Methionyl-tRNA formyltransferase, N-terminal hydrolase domain Back     alignment and domain information
>gnl|CDD|237266 PRK13011, PRK13011, formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>gnl|CDD|215159 PLN02285, PLN02285, methionyl-tRNA formyltransferase Back     alignment and domain information
>gnl|CDD|139334 PRK13010, purU, formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>gnl|CDD|223301 COG0223, Fmt, Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232983 TIGR00460, fmt, methionyl-tRNA formyltransferase Back     alignment and domain information
>gnl|CDD|187720 cd08651, FMT_core_like_4, Formyl transferase catalytic core domain found in a group of proteins with unknown functions Back     alignment and domain information
>gnl|CDD|187724 cd08822, FMT_core_like_2, Formyl transferase catalytic core domain found in a group of proteins with unknown functions Back     alignment and domain information
>gnl|CDD|234567 PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|187713 cd08644, FMT_core_ArnA_N, ArnA, N-terminal formyltransferase domain Back     alignment and domain information
>gnl|CDD|235902 PRK06988, PRK06988, putative formyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|187718 cd08649, FMT_core_NRPS_like, N-terminal formyl transferase catalytic core domain of NRPS_like proteins, one of the proteins involved in the synthesis of Oxazolomycin Back     alignment and domain information
>gnl|CDD|187725 cd08823, FMT_core_like_5, Formyl transferase catalytic core domain found in a group of proteins with unknown functions Back     alignment and domain information
>gnl|CDD|236156 PRK08125, PRK08125, bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated Back     alignment and domain information
>gnl|CDD|187722 cd08820, FMT_core_like_6, Formyl transferase catalytic core domain found in a group of proteins with unknown functions Back     alignment and domain information
>gnl|CDD|187716 cd08647, FMT_core_FDH_N, 10-formyltetrahydrofolate dehydrogenase (FDH), N-terminal hydrolase domain Back     alignment and domain information
>gnl|CDD|236058 PRK07579, PRK07579, hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query245
1mej_B223 Human Glycinamide Ribonucleotide Transformylase Dom 9e-34
1zly_A203 The Structure Of Human Glycinamide Ribonucleotide T 1e-33
1meo_A209 Human Glycinamide Ribonucleotide Transformylase At 1e-33
1zlx_A203 The Apo Structure Of Human Glycinamide Ribonucleoti 3e-33
3kcq_A215 Crystal Structure Of Phosphoribosylglycinamide Form 1e-26
4ds3_A209 Crystal Structure Of Phosphoribosylglycinamide Form 5e-26
2ywr_A216 Crystal Structure Of Gar Transformylase From Aquife 9e-25
2gar_A212 A Ph-dependent Stablization Of An Active Site Loop 2e-22
1cdd_A212 Structures Of Apo And Complexed Escherichia Coli Gl 2e-22
1grc_A212 Crystal Structure Of Glycinamide Ribonucleotide Tra 2e-22
1c3e_A209 New Insights Into Inhibitor Design From The Crystal 2e-22
3auf_A229 Crystal Structure Of Glycinamide Ribonucleotide Tra 8e-22
3p9x_A211 Crystal Structure Of Phosphoribosylglycinamide Form 2e-20
3tqr_A215 Structure Of The Phosphoribosylglycinamide Formyltr 9e-20
3av3_A212 Crystal Structure Of Glycinamide Ribonucleotide Tra 2e-18
3da8_A215 Crystal Structure Of Purn From Mycobacterium Tuberc 8e-18
3obi_A288 Crystal Structure Of A Formyltetrahydrofolate Defor 1e-12
3nrb_A287 Crystal Structure Of A Formyltetrahydrofolate Defor 9e-11
3o1l_A302 Crystal Structure Of A Formyltetrahydrofolate Defor 8e-09
3n0v_A286 Crystal Structure Of A Formyltetrahydrofolate Defor 2e-08
3lou_A292 Crystal Structure Of Formyltetrahydrofolate Deformy 1e-06
4iqf_A 317 Crystal Structure Of Methyionyl-trna Formyltransfer 3e-05
3tqq_A 314 Structure Of The Methionyl-Trna Formyltransferase ( 4e-05
1s3i_A 310 Crystal Structure Of The N Terminal Hydrolase Domai 2e-04
1fmt_A 314 Methionyl-Trnafmet Formyltransferase From Escherich 4e-04
1z7e_A 660 Crystal Structure Of Full Length Arna Length = 660 9e-04
>pdb|1MEJ|B Chain B, Human Glycinamide Ribonucleotide Transformylase Domain At Ph 8.5 Length = 223 Back     alignment and structure 
Iteration: 1

 Score =  140 bits (352), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 66/108 (61%), Positives = 83/108 (76%), Gaps = 1/108 (0%)
Query: 131 VLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAIIC 190
           +L G FV +W GK++NIHP+LLP FKG +AH QAL+ GV VTGCTVHFV E VDAG II 
Sbjct: 102 ILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQIIL 161
Query: 191 QESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLDLDSGKL 238
           QE+VP+   DT  +LSERVK AEHK +P AL+LVA+  V+L  ++GK+
Sbjct: 162 QEAVPVKRGDTVATLSERVKLAEHKIFPAALQLVASGTVQLG-ENGKI 208
>pdb|1ZLY|A Chain A, The Structure Of Human Glycinamide Ribonucleotide Transformylase In Complex With Alpha,beta-n- (hydroxyacetyl)-d-ribofuranosylamine And 10-formyl-5,8, Dideazafolate Length = 203 Back     alignment and structure
>pdb|1MEO|A Chain A, Human Glycinamide Ribonucleotide Transformylase At Ph 4.2 Length = 209 Back     alignment and structure
>pdb|1ZLX|A Chain A, The Apo Structure Of Human Glycinamide Ribonucleotide Transformylase Length = 203 Back     alignment and structure
>pdb|3KCQ|A Chain A, Crystal Structure Of Phosphoribosylglycinamide Formyltransferase From Anaplasma Phagocytophilum Length = 215 Back     alignment and structure
>pdb|4DS3|A Chain A, Crystal Structure Of Phosphoribosylglycinamide Formyltransferase From Brucella Melitensis Length = 209 Back     alignment and structure
>pdb|2YWR|A Chain A, Crystal Structure Of Gar Transformylase From Aquifex Aeolicus Length = 216 Back     alignment and structure
>pdb|2GAR|A Chain A, A Ph-dependent Stablization Of An Active Site Loop Observed From Low And High Ph Crystal Structures Of Mutant Monomeric Glycinamide Ribonucleotide Transformylase Length = 212 Back     alignment and structure
>pdb|1CDD|A Chain A, Structures Of Apo And Complexed Escherichia Coli Glycinamide Ribonucleotide Transformylase Length = 212 Back     alignment and structure
>pdb|1GRC|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide Transformylase From Escherichia Coli At 3.0 Angstroms Resolution: A Target Enzyme For Chemotherapy Length = 212 Back     alignment and structure
>pdb|1C3E|A Chain A, New Insights Into Inhibitor Design From The Crystal Structure And Nmr Studies Of E. Coli Gar Transformylate In Complex With Beta-Gar And 10-Formyl-5,8,10-Trideazafolic Acid. Length = 209 Back     alignment and structure
>pdb|3AUF|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide Transformylase 1 From Symbiobacterium Toebii Length = 229 Back     alignment and structure
>pdb|3P9X|A Chain A, Crystal Structure Of Phosphoribosylglycinamide Formyltransferase From Bacillus Halodurans Length = 211 Back     alignment and structure
>pdb|3TQR|A Chain A, Structure Of The Phosphoribosylglycinamide Formyltransferase (Purn) In Complex With Ches From Coxiella Burnetii Length = 215 Back     alignment and structure
>pdb|3AV3|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide Transformylase 1 From Geobacillus Kaustophilus Length = 212 Back     alignment and structure
>pdb|3DA8|A Chain A, Crystal Structure Of Purn From Mycobacterium Tuberculosis Length = 215 Back     alignment and structure
>pdb|3OBI|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (Np_949368) From Rhodopseudomonas Palustris Cga009 At 1.95 A Resolution Length = 288 Back     alignment and structure
>pdb|3NRB|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A Resolution Length = 287 Back     alignment and structure
>pdb|3O1L|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (Pspto_4314) From Pseudomonas Syringae Pv. Tomato Str. Dc3000 At 2.20 A Resolution Length = 302 Back     alignment and structure
>pdb|3N0V|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A Resolution Length = 286 Back     alignment and structure
>pdb|3LOU|A Chain A, Crystal Structure Of Formyltetrahydrofolate Deformylase (yp_105254.1) From Burkholderia Mallei Atcc 23344 At 1.90 A Resolution Length = 292 Back     alignment and structure
>pdb|4IQF|A Chain A, Crystal Structure Of Methyionyl-trna Formyltransferase From Bacillus Anthracis Length = 317 Back     alignment and structure
>pdb|3TQQ|A Chain A, Structure Of The Methionyl-Trna Formyltransferase (Fmt) From Coxiella Burnetii Length = 314 Back     alignment and structure
>pdb|1S3I|A Chain A, Crystal Structure Of The N Terminal Hydrolase Domain Of 10- Formyltetrahydrofolate Dehydrogenase Length = 310 Back     alignment and structure
>pdb|1FMT|A Chain A, Methionyl-Trnafmet Formyltransferase From Escherichia Coli Length = 314 Back     alignment and structure
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna Length = 660 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query245
3da8_A215 Probable 5'-phosphoribosylglycinamide formyltransf 3e-58
1meo_A209 Phosophoribosylglycinamide formyltransferase; puri 5e-58
1jkx_A212 GART;, phosphoribosylglycinamide formyltransferase 1e-57
3auf_A229 Glycinamide ribonucleotide transformylase 1; struc 1e-57
3p9x_A211 Phosphoribosylglycinamide formyltransferase; struc 2e-57
3tqr_A215 Phosphoribosylglycinamide formyltransferase; purin 3e-57
2ywr_A216 Phosphoribosylglycinamide formyltransferase; rossm 4e-57
3av3_A212 Phosphoribosylglycinamide formyltransferase; struc 7e-57
4ds3_A209 Phosphoribosylglycinamide formyltransferase; struc 7e-57
3kcq_A215 Phosphoribosylglycinamide formyltransferase; struc 5e-56
3lou_A292 Formyltetrahydrofolate deformylase; structural gen 1e-22
3n0v_A286 Formyltetrahydrofolate deformylase; formyl transfe 1e-22
3nrb_A287 Formyltetrahydrofolate deformylase; N-terminal ACT 1e-22
3obi_A288 Formyltetrahydrofolate deformylase; structural gen 2e-22
3o1l_A302 Formyltetrahydrofolate deformylase; structural gen 2e-22
2bln_A305 Protein YFBG; transferase, formyltransferase, L-AR 8e-12
1z7e_A 660 Protein aRNA; rossmann fold, OB-like fold, hydrola 6e-11
2bw0_A329 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase 3e-10
3rfo_A 317 Methionyl-tRNA formyltransferase; structural genom 2e-09
1fmt_A 314 Methionyl-tRNA FMet formyltransferase; initiator t 2e-09
3q0i_A 318 Methionyl-tRNA formyltransferase; structural genom 4e-09
3tqq_A 314 Methionyl-tRNA formyltransferase; protein synthesi 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1zgh_A260 Methionyl-tRNA formyltransferase; southeast collab 2e-06
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A* Length = 215 Back     alignment and structure
 Score =  183 bits (466), Expect = 3e-58
 Identities = 45/110 (40%), Positives = 62/110 (56%), Gaps = 7/110 (6%)

Query: 130 VVLCG-------EFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEES 182
           VV  G       +F++R+ G+ +N HPALLP F G H    AL  GV+VTG TVH V+  
Sbjct: 93  VVSAGFMRILGPQFLSRFYGRTLNTHPALLPAFPGTHGVADALAYGVKVTGATVHLVDAG 152

Query: 183 VDAGAIICQESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKLD 232
            D G I+ Q+ VP+   D EE+L ER+K  E +    A+  +AT  V + 
Sbjct: 153 TDTGPILAQQPVPVLDGDDEETLHERIKVTERRLLVAAVAALATHGVTVV 202
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A* Length = 209 Back     alignment and structure
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A* Length = 212 Back     alignment and structure
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii} Length = 229 Back     alignment and structure
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans} Length = 211 Back     alignment and structure
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} Length = 215 Back     alignment and structure
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus} Length = 216 Back     alignment and structure
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus} Length = 212 Back     alignment and structure
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV} Length = 209 Back     alignment and structure
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} Length = 215 Back     alignment and structure
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei} Length = 292 Back     alignment and structure
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} Length = 286 Back     alignment and structure
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida} Length = 287 Back     alignment and structure
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris} Length = 288 Back     alignment and structure
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV} Length = 302 Back     alignment and structure
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A Length = 305 Back     alignment and structure
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Length = 660 Back     alignment and structure
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A Length = 329 Back     alignment and structure
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A Length = 314 Back     alignment and structure
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae} Length = 318 Back     alignment and structure
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii} Length = 314 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1 Length = 260 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query245
3tqq_A314 Methionyl-tRNA formyltransferase; protein synthesi 100.0
3rfo_A317 Methionyl-tRNA formyltransferase; structural genom 100.0
3q0i_A318 Methionyl-tRNA formyltransferase; structural genom 100.0
1fmt_A314 Methionyl-tRNA FMet formyltransferase; initiator t 100.0
2bln_A305 Protein YFBG; transferase, formyltransferase, L-AR 100.0
2bw0_A329 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase 100.0
1meo_A209 Phosophoribosylglycinamide formyltransferase; puri 100.0
2ywr_A216 Phosphoribosylglycinamide formyltransferase; rossm 100.0
1jkx_A212 GART;, phosphoribosylglycinamide formyltransferase 100.0
1z7e_A 660 Protein aRNA; rossmann fold, OB-like fold, hydrola 100.0
3auf_A229 Glycinamide ribonucleotide transformylase 1; struc 100.0
3da8_A215 Probable 5'-phosphoribosylglycinamide formyltransf 100.0
3av3_A212 Phosphoribosylglycinamide formyltransferase; struc 100.0
3tqr_A215 Phosphoribosylglycinamide formyltransferase; purin 100.0
3kcq_A215 Phosphoribosylglycinamide formyltransferase; struc 100.0
3p9x_A211 Phosphoribosylglycinamide formyltransferase; struc 100.0
4ds3_A209 Phosphoribosylglycinamide formyltransferase; struc 100.0
3o1l_A302 Formyltetrahydrofolate deformylase; structural gen 100.0
3n0v_A286 Formyltetrahydrofolate deformylase; formyl transfe 100.0
3lou_A292 Formyltetrahydrofolate deformylase; structural gen 100.0
3nrb_A287 Formyltetrahydrofolate deformylase; N-terminal ACT 100.0
3obi_A288 Formyltetrahydrofolate deformylase; structural gen 100.0
1zgh_A260 Methionyl-tRNA formyltransferase; southeast collab 99.98
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii} Back     alignment and structure
Probab=100.00  E-value=9.3e-47  Score=340.31  Aligned_cols=191  Identities=21%  Similarity=0.314  Sum_probs=168.3

Q ss_pred             cccccCHHHHhhcCceEEEEEeccCCCCcccccccCCCcccCCchHHHhhhccccccccccccCCcCCCCCCcccChHH-
Q psy13607         31 GCSAMSQTEYLHRHNQVAAIIHQNISSNLKLIDEKTPYYKYEPPPVIETAKYTVYYDRTIMTDKTIPNNRPDIVVHDKE-  109 (245)
Q Consensus        31 ~c~~~~l~~l~~rh~~V~~Vit~~~~~~~~~~~~~~~~~~~~~~pVke~A~~~v~~~~~i~~~~~i~v~qPD~v~~~~~-  109 (245)
                      +|++.+|+++++++++|++|+|+||++       .+|+.++.++||++.|..           .+||+++|+.++++.. 
T Consensus        12 ~fa~~~L~~L~~~~~~v~~Vvt~pd~~-------~grg~~l~~~~v~~~A~~-----------~gIpv~~~~~~~~~~~~   73 (314)
T 3tqq_A           12 QFAVPTLRALIDSSHRVLAVYTQPDRP-------SGRGQKIMESPVKEIARQ-----------NEIPIIQPFSLRDEVEQ   73 (314)
T ss_dssp             GGGHHHHHHHHHSSSEEEEEECCCC-----------------CCHHHHHHHH-----------TTCCEECCSCSSSHHHH
T ss_pred             HHHHHHHHHHHHCCCeEEEEEeCCCCc-------cccCCccCCCHHHHHHHH-----------cCCCEECcccCCCHHHH
Confidence            355677899999899999999999999       567788999999999986           4899999999886543 


Q ss_pred             -HHHhhhcceeeccCccccccccCChHHHHhhcccceeeecCCCCCCCCccHHHHHHHcCCeeEEEEEEeecccCCCCce
Q psy13607        110 -RRMALLVDIAIPNTHNMESTVVLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAGAI  188 (245)
Q Consensus       110 -~~~~l~~Dv~v~~d~~v~~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~wai~~g~~~~GvTih~~~~~~D~G~I  188 (245)
                       .+.++.+|++|+    ++|++|||+++|+.+++|+||+|||+||+|||++|++|||++|+++||+|+|+|++++|+|||
T Consensus        74 ~~l~~~~~Dliv~----~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi~~Ai~~G~~~tGvTih~~~~~~D~G~I  149 (314)
T 3tqq_A           74 EKLIAMNADVMVV----VAYGLILPKKALNAFRLGCVNVHASLLPRWRGAAPIQRAILAGDRETGISIMQMNEGLDTGDV  149 (314)
T ss_dssp             HHHHTTCCSEEEE----ESCCSCCCHHHHTSSTTCEEEEESSCTTTTBSSCHHHHHHHHTCSEEEEEEEECCSSSSCSCE
T ss_pred             HHHHhcCCCEEEE----cCcccccCHHHHhhCcCCEEEecCccccCCCCccHHHHHHHcCCCeeEEEEEeeecCCCCCCE
Confidence             577899999999    999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCeee--------------ecCCCeEEEeec
Q psy13607        189 ICQESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKL--------------DLDSGKLDFNVV  243 (245)
Q Consensus       189 i~q~~~~I~~~dt~~~l~~~l~~~~~~ll~~~l~~l~~g~~~~--------------~~~~~~~~~~~~  243 (245)
                      |.|+.++|.++||.++|++|+.+++.+++.++++.+.+|++++              +++|++|||+++
T Consensus       150 i~q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~~~~~~Q~~~~~tya~ki~~~d~~Idw~~~  218 (314)
T 3tqq_A          150 LAKSACVISSEDTAADLHDRLSLIGADLLLESLAKLEKGDIKLEKQDEASATYASKIQKQEALIDWRKS  218 (314)
T ss_dssp             EEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCBCCCGGGCCBCCCCCGGGGBCCTTSB
T ss_pred             EEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcCCCccccCCCCCCHHHheecccCC
Confidence            9999999999999999999999999999999999999998765              367899999875
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae} Back     alignment and structure
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A Back     alignment and structure
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A Back     alignment and structure
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A Back     alignment and structure
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A* Back     alignment and structure
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus} Back     alignment and structure
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A* Back     alignment and structure
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Back     alignment and structure
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii} Back     alignment and structure
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A* Back     alignment and structure
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus} Back     alignment and structure
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0 Back     alignment and structure
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0 Back     alignment and structure
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans} Back     alignment and structure
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV} Back     alignment and structure
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV} Back     alignment and structure
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} Back     alignment and structure
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei} Back     alignment and structure
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida} Back     alignment and structure
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris} Back     alignment and structure
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 245
d1jkxa_209 c.65.1.1 (A:) Glycinamide ribonucleotide transform 1e-18
d1meoa_205 c.65.1.1 (A:) Glycinamide ribonucleotide transform 2e-18
d1fmta2206 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransf 2e-10
>d1jkxa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Escherichia coli [TaxId: 562]} Length = 209 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Glycinamide ribonucleotide transformylase, GART
species: Escherichia coli [TaxId: 562]

 Score = 79.5 bits (195), Expect = 1e-18
 Identities = 57/188 (30%), Positives = 91/188 (48%), Gaps = 5/188 (2%)

Query: 57  SNLK-LID-EKTPYYKYEPPPVI---ETAKYTVYYDRTIMTDKTIPNNRPDIVVHDKERR 111
           SNL+ +ID  KT   K     V      A       +  +   T+  +  D         
Sbjct: 12  SNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAFDSREAYDREL 71

Query: 112 MALLVDIAIPNTHNMESTVVLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRV 171
           +  +   A           +L   FV+ + G+L+NIHP+LLP + G+H HRQAL+ G   
Sbjct: 72  IHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEE 131

Query: 172 TGCTVHFVEESVDAGAIICQESVPIYPRDTEESLSERVKSAEHKAYPRALELVATERVKL 231
            G +VHFV + +D G +I Q  VP++  D+E+ ++ RV++ EH  YP  +   A  R+K+
Sbjct: 132 HGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLVISWFADGRLKM 191

Query: 232 DLDSGKLD 239
             ++  LD
Sbjct: 192 HENAAWLD 199
>d1meoa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Human (Homo sapiens) [TaxId: 9606]} Length = 205 Back     information, alignment and structure
>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]} Length = 206 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query245
d2bw0a2203 10-formyltetrahydrofolate dehydrogenase domain 1 { 100.0
d1fmta2206 Methionyl-tRNAfmet formyltransferase {Escherichia 100.0
d2blna2203 Polymyxin resistance protein ArnA, N-terminal doma 100.0
d1meoa_205 Glycinamide ribonucleotide transformylase, GART {H 100.0
d1jkxa_209 Glycinamide ribonucleotide transformylase, GART {E 100.0
d1zgha2164 Methionyl-tRNAfmet formyltransferase {Clostridium 99.95
>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: 10-formyltetrahydrofolate dehydrogenase domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-39  Score=272.38  Aligned_cols=172  Identities=18%  Similarity=0.218  Sum_probs=150.0

Q ss_pred             ccCHHHHhhcCceEEEEEeccCCCCcccccccCCCcccCCchHHHhhhccccccccccccCCcCCCCCCcccCh-----H
Q psy13607         34 AMSQTEYLHRHNQVAAIIHQNISSNLKLIDEKTPYYKYEPPPVIETAKYTVYYDRTIMTDKTIPNNRPDIVVHD-----K  108 (245)
Q Consensus        34 ~~~l~~l~~rh~~V~~Vit~~~~~~~~~~~~~~~~~~~~~~pVke~A~~~v~~~~~i~~~~~i~v~qPD~v~~~-----~  108 (245)
                      ...++.++.++++|++|+|+|+++.             ..+++++.|..           +++|++++......     +
T Consensus        13 ~~~l~~L~~~~~~i~~V~t~p~~~~-------------~~~~v~~~a~~-----------~~ipv~~~~~~~~~~~~~~~   68 (203)
T d2bw0a2          13 QEVYCHLRKEGHEVVGVFTVPDKDG-------------KADPLGLEAEK-----------DGVPVFKYSRWRAKGQALPD   68 (203)
T ss_dssp             HHHHHHHHHTTCEEEEEEECCCCSS-------------CCCHHHHHHHH-----------HTCCEEECSCCEETTEECHH
T ss_pred             HHHHHHHHHCCCcEEEEEcCCCcCc-------------CCChhhhhHHh-----------cCCcccccccccccccccHH
Confidence            3456777788899999999998662             13578888875           26777776544322     2


Q ss_pred             --HHHHhhhcceeeccCccccccccCChHHHHhhcccceeeecCCCCCCCCccHHHHHHHcCCeeEEEEEEeecccCCCC
Q psy13607        109 --ERRMALLVDIAIPNTHNMESTVVLCGEFVNRWRGKLINIHPALLPLFKGMHAHRQALDAGVRVTGCTVHFVEESVDAG  186 (245)
Q Consensus       109 --~~~~~l~~Dv~v~~d~~v~~~~il~~~~l~~~~~~~iNiHpslLP~yRG~~pi~wai~~g~~~~GvTih~~~~~~D~G  186 (245)
                        +.+..+.+|++|+    ++|++|||+++++.++.|++|+|||+||+|||++|++|||++|++++|+|+|+|++++|+|
T Consensus        69 ~~~~l~~~~~Dliv~----~~~~~ii~~~~l~~~~~g~iN~H~slLP~yrG~~pi~wai~~g~~~~GvTih~~~~~~D~G  144 (203)
T d2bw0a2          69 VVAKYQALGAELNVL----PFCSQFIPMEIISAPRHGSIIYHPSLLPRHRGASAINWTLIHGDKKGGFSIFWADDGLDTG  144 (203)
T ss_dssp             HHHHHHTTCCSEEEE----SSCSSCCCHHHHTCSTTCEEEEESSCTTTTBSSCHHHHHHHTTCSEEEEEEEECCSSSSCS
T ss_pred             HHHHHHHhCCCceEE----eecchhhhhhhhhhhhhHhhhhhhcccccccccceeeeeecccccccCceeEEeccccccc
Confidence              2467889999999    9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEeCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHhhCCeeeec
Q psy13607        187 AIICQESVPIYPRDTEESLSER-VKSAEHKAYPRALELVATERVKLDL  233 (245)
Q Consensus       187 ~Ii~q~~~~I~~~dt~~~l~~~-l~~~~~~ll~~~l~~l~~g~~~~~~  233 (245)
                      ||+.|+.++|.++||..+|++| +.+++.+++.++++.+.+|++++.+
T Consensus       145 ~Ii~q~~~~i~~~dt~~~l~~k~l~~~~~~~~~~~l~~i~~g~~~~~~  192 (203)
T d2bw0a2         145 DLLLQKECEVLPDDTVSTLYNRFLFPEGIKGMVQAVRLIAEGKAPRLP  192 (203)
T ss_dssp             CEEEEEEEECCTTCCHHHHHHHTTTHHHHHHHHHHHHHHHHTCCCCBC
T ss_pred             hhheeecccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence            9999999999999999999999 6788999999999999999987753
>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1meoa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkxa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zgha2 c.65.1.1 (A:1-164) Methionyl-tRNAfmet formyltransferase {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure