Psyllid ID: psy13612

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
MPANHKIFNDSVHGHMKFHPICVAIIDTPQFQRLRNIKQTSTTYLVYPGACHNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSEEVLDYLIEDNKLGPLFESYNLNLNLIKELIRGGGESLPADKRFLYQIIANKETDIDVDKWDYFLRDGHQLNLKITFDYRRLLSFCTVVKRPTDSGPTIAFRNKEASNIFDMFRVRADLHLRAYQHCATKNTELVRRPSIDEVNLCCRGSVDGFNRSTAFDYVWRQLNSS
ccccccEEEccccccccccHHHHHHHccHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccHHHHHcccccccccccccHHHHHHHHHHcccHHHHHHccccHHHHHHHHcccccccccHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccHHHHHHHcEEEEcccccccEEEEccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHcccc
cccccEEEcccccccEEEccEEEEHcccHHHHHHHHHHHccccEEEccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccHHHHcccccccccHHHHHHHHHHHccccccHHHHHHHccccHHHHHHHHcccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHEEcccccccEEEEEcccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccHHcccccccHHHccccccc
mpanhkifndsvhghmkfHPICvaiidtpqfqrlrnikqtsttylvypgachnrfehslgvsylGGCMVDAlvhntpglhitaEEKLSVELAGLchdlghgpfshTWEKFLRRFDshwkheqgsEEVLDYLIEdnklgplfesyNLNLNLIKELIRgggeslpadKRFLYQIIANketdidvdkwdyflrdghqlnlKITFDYRRLLSFCtvvkrptdsgptiafrnkeasnIFDMFRVRADLHLRAYQHCatkntelvrrpsidevnlccrgsvdgfnrstAFDYVWRQLNSS
MPANHKIFNDSVHGHMKFHPICVAIIDTPQFQRLRNIKQTSTTYLVYPGACHNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSEEVLDYLIEDNKLGPLFESYNLNLNLIKELIRGGGESLPADKRFLYQIIANketdidvdKWDYFLRDGHQLNLKITFDYRRLLSFCTvvkrptdsgptiafrnkeasnIFDMFRVRADLHLRAYQHcatkntelvrrpsideVNLCCRgsvdgfnrstAFDYVWRQLNSS
MPANHKIFNDSVHGHMKFHPICVAIIDTPQFQRLRNIKQTSTTYLVYPGACHNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSEEVLDYLIEDNKLGPLFESYNLNLNLIKELIRGGGESLPADKRFLYQIIANKETDIDVDKWDYFLRDGHQLNLKITFDYRRLLSFCTVVKRPTDSGPTIAFRNKEASNIFDMFRVRADLHLRAYQHCATKNTELVRRPSIDEVNLCCRGSVDGFNRSTAFDYVWRQLNSS
******IFNDSVHGHMKFHPICVAIIDTPQFQRLRNIKQTSTTYLVYPGACHNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSEEVLDYLIEDNKLGPLFESYNLNLNLIKELIRGGGESLPADKRFLYQIIANKETDIDVDKWDYFLRDGHQLNLKITFDYRRLLSFCTVVKRPTDSGPTIAFRNKEASNIFDMFRVRADLHLRAYQHCATKNTELVRRPSIDEVNLCCRGSVDGFNRSTAFDYVWRQ****
***NHKIFNDSVHGHMKFHPICVAIIDTPQFQRLRNIKQTSTTYLVYPGACHNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSEEVLDYLIEDNKLGPLFESYNLNLNLIKELIRGGGESLPADKRFLYQIIANKETDIDVDKWDYFLRDGHQLNLKITFDYRRLLSFCTVVKRPTDSGPTIAFRNKEASNIFDMFRVRADLHLRAYQHCATKNTELVRRPSIDEVNLCCRGSVDGFNRSTAFDYVWRQLN**
MPANHKIFNDSVHGHMKFHPICVAIIDTPQFQRLRNIKQTSTTYLVYPGACHNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSEEVLDYLIEDNKLGPLFESYNLNLNLIKELIRGGGESLPADKRFLYQIIANKETDIDVDKWDYFLRDGHQLNLKITFDYRRLLSFCTVVKRPTDSGPTIAFRNKEASNIFDMFRVRADLHLRAYQHCATKNTELVRRPSIDEVNLCCRGSVDGFNRSTAFDYVWRQLNSS
****HKIFNDSVHGHMKFHPICVAIIDTPQFQRLRNIKQTSTTYLVYPGACHNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSEEVLDYLIEDNKLGPLFESYNLNLNLIKELIRGGGESLPADKRFLYQIIANKETDIDVDKWDYFLRDGHQLNLKITFDYRRLLSFCTVVKRPTDSGPTIAFRNKEASNIFDMFRVRADLHLRAYQHCATKNTELVRRPSIDEVNLCCRGSVDGFNRSTAFDYVWRQL***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MPANHKIFNDSVHGHMKFHPICVAIIDTPQFQRLRNIKQTSTTYLVYPGACHNRFEHSLGVSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSEEVLDYLIEDNKLGPLFESYNLNLNLIKELIRGGGESLPADKRFLYQIIANKETDIDVDKWDYFLRDGHQLNLKITFDYRRLLSFCTVVKRPTDSGPTIAFRNKEASNIFDMFRVRADLHLRAYQHCATKNTELVRRPSIDEVNLCCRGSVDGFNRSTAFDYVWRQLNSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query294 2.2.26 [Sep-21-2011]
Q5ZJL9 614 SAM domain and HD domain- yes N/A 0.826 0.395 0.520 6e-68
Q9Y3Z3 626 SAM domain and HD domain- yes N/A 0.826 0.388 0.498 1e-66
Q60710 627 SAM domain and HD domain- yes N/A 0.833 0.390 0.485 1e-65
Q502K2 622 SAM domain and HD domain- yes N/A 0.826 0.390 0.481 1e-63
Q0VCA5 589 SAM domain and HD domain- yes N/A 0.826 0.412 0.492 1e-63
Q6INN8 632 SAM domain and HD domain- N/A N/A 0.840 0.390 0.461 5e-61
B0G107 514 Protein SAMHD1 homolog OS yes N/A 0.826 0.472 0.398 9e-48
Q09374 587 Uncharacterized protein Z yes N/A 0.853 0.427 0.355 1e-36
Q5UQ48 457 Putative HD domain-contai N/A N/A 0.833 0.536 0.304 2e-28
P39651 433 Uncharacterized protein Y yes N/A 0.772 0.524 0.293 1e-20
>sp|Q5ZJL9|SAMH1_CHICK SAM domain and HD domain-containing protein 1 OS=Gallus gallus GN=SAMHD1 PE=2 SV=1 Back     alignment and function desciption
 Score =  257 bits (657), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 137/263 (52%), Positives = 168/263 (63%), Gaps = 20/263 (7%)

Query: 6   KIFNDSVHGHMKFHPICVAIIDTPQFQRLRNIKQTSTTYLVYPGACHNRFEHSLGVSYLG 65
           K+FND VHGH++ HP+ V IIDTPQFQRLR IKQ   TY V+PGA HNRFEHSLGV YL 
Sbjct: 107 KVFNDPVHGHIEIHPLLVRIIDTPQFQRLRYIKQLGGTYFVFPGASHNRFEHSLGVGYLA 166

Query: 66  GCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWE-KF--LRRFDSHWKHEQ 122
           GC+V  L    P L IT  + L VE+AGLCHDLGHGPFSH ++ +F  L R   +WKHE 
Sbjct: 167 GCLVRELKERQPELDITQRDILCVEIAGLCHDLGHGPFSHMFDGRFIPLARQGLNWKHET 226

Query: 123 GSEEVLDYLIEDNKLGPLFESYNL----NLNLIKELIRGGGESL-----------PADKR 167
            S E+ ++LI  NKL  + ESY L    ++  IKE I G  +             P +K 
Sbjct: 227 ASVEMFEHLITSNKLEEIMESYGLILEEDIAFIKEQIGGPIDETACEESWPYRGRPKEKS 286

Query: 168 FLYQIIANKETDIDVDKWDYFLRDGHQLNLKITFDYRRLLSFCTVVKRPTDSGPTIAFRN 227
           FLY+I+ANK+  IDVDKWDYF RD H L ++  FDYRRL+ F  V +    +   I  R+
Sbjct: 287 FLYEIVANKKNGIDVDKWDYFARDCHHLGIQNNFDYRRLIKFTRVCE--AGNQKHICARD 344

Query: 228 KEASNIFDMFRVRADLHLRAYQH 250
           KE  N++DMF  R  LH RAYQH
Sbjct: 345 KEVGNLYDMFHTRNCLHRRAYQH 367
Putative nuclease involved in innate immune response by acting as a negative regulator of the cell-intrinsic antiviral response.
Gallus gallus (taxid: 9031)
EC: 3EC: .EC: 1EC: .EC: 4EC: .EC: -
>sp|Q9Y3Z3|SAMH1_HUMAN SAM domain and HD domain-containing protein 1 OS=Homo sapiens GN=SAMHD1 PE=1 SV=2 Back     alignment and function description
>sp|Q60710|SAMH1_MOUSE SAM domain and HD domain-containing protein 1 OS=Mus musculus GN=Samhd1 PE=1 SV=2 Back     alignment and function description
>sp|Q502K2|SAMH1_DANRE SAM domain and HD domain-containing protein 1 OS=Danio rerio GN=samhd1 PE=2 SV=2 Back     alignment and function description
>sp|Q0VCA5|SAMH1_BOVIN SAM domain and HD domain-containing protein 1 OS=Bos taurus GN=SAMHD1 PE=2 SV=1 Back     alignment and function description
>sp|Q6INN8|SAMH1_XENLA SAM domain and HD domain-containing protein 1 OS=Xenopus laevis GN=samhd1 PE=2 SV=2 Back     alignment and function description
>sp|B0G107|SAMH1_DICDI Protein SAMHD1 homolog OS=Dictyostelium discoideum GN=DDB_G0272484 PE=3 SV=1 Back     alignment and function description
>sp|Q09374|YS48_CAEEL Uncharacterized protein ZK177.8 OS=Caenorhabditis elegans GN=ZK177.8 PE=4 SV=2 Back     alignment and function description
>sp|Q5UQ48|YL394_MIMIV Putative HD domain-containing protein L394 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L394 PE=4 SV=1 Back     alignment and function description
>sp|P39651|YWFO_BACSU Uncharacterized protein YwfO OS=Bacillus subtilis (strain 168) GN=ywfO PE=4 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query294
193610915 467 PREDICTED: SAM domain and HD domain-cont 0.860 0.541 0.590 5e-84
432101429 621 SAM domain and HD domain-containing prot 0.826 0.391 0.501 2e-67
344279949 625 PREDICTED: SAM domain and HD domain-cont 0.826 0.388 0.503 3e-66
71895035 614 SAM domain and HD domain-containing prot 0.826 0.395 0.520 3e-66
355717809 590 SAM domain and HD domain 1 [Mustela puto 0.826 0.411 0.498 1e-65
301758729 627 PREDICTED: SAM domain and HD domain-cont 0.826 0.387 0.501 1e-65
377652588 627 SAM domain and HD domain-containing prot 0.826 0.387 0.503 1e-65
281339265 625 hypothetical protein PANDA_003178 [Ailur 0.826 0.388 0.501 1e-65
327271630 629 PREDICTED: SAM domain and HD domain-cont 0.826 0.386 0.517 2e-65
293346443 608 PREDICTED: SAM domain and HD domain-cont 0.833 0.402 0.490 3e-65
>gi|193610915|ref|XP_001950657.1| PREDICTED: SAM domain and HD domain-containing protein 1-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  317 bits (812), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 154/261 (59%), Positives = 192/261 (73%), Gaps = 8/261 (3%)

Query: 6   KIFNDSVHGHMKFHPICVAIIDTPQFQRLRNIKQTSTTYLVYPGACHNRFEHSLGVSYLG 65
           K+FND++HGH+  HP+CV  IDTP+FQRLRNIKQ  TTYLVYP A  NRFEHS+GV YL 
Sbjct: 12  KVFNDNIHGHIMLHPLCVKFIDTPEFQRLRNIKQLGTTYLVYPCASINRFEHSIGVCYLA 71

Query: 66  GCMVDALVHNT-PGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGS 124
           G M++AL  N+   +++T EEKL VELAGLCHDLGHGP SH+WE++L+     WKHE+ S
Sbjct: 72  GQMIEALCRNSGEDINVTKEEKLCVELAGLCHDLGHGPLSHSWERYLKASGVDWKHEESS 131

Query: 125 EEVLDYLIEDNKLGPLFESYNLN----LNLIKELIRGGGESLPADKRFLYQIIANKETDI 180
            E+L Y+I+        + Y LN    + LI E IRG G+ L  +  FLYQ+++NK+  I
Sbjct: 132 TEMLKYIIQKYDFEEELKKYGLNVEYHVELICEFIRGEGK-LLVENHFLYQVVSNKDNGI 190

Query: 181 DVDKWDYFLRDGHQLNLKITFDYRRLLSFCTVVKRPTDSGP--TIAFRNKEASNIFDMFR 238
           DVDKWDYFLRDG+ LNL I+FDY+RL+ F  VV  P  + P   IAFRNKEA NI+DMFR
Sbjct: 191 DVDKWDYFLRDGNCLNLSISFDYKRLMQFSRVVVDPNSNKPKQVIAFRNKEARNIYDMFR 250

Query: 239 VRADLHLRAYQHCATKNTELV 259
           VR+DLHLRAYQH A +NTEL+
Sbjct: 251 VRSDLHLRAYQHTAVQNTELM 271

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|432101429|gb|ELK29611.1| SAM domain and HD domain-containing protein 1 [Myotis davidii] Back     alignment and taxonomy information
>gi|344279949|ref|XP_003411748.1| PREDICTED: SAM domain and HD domain-containing protein 1 [Loxodonta africana] Back     alignment and taxonomy information
>gi|71895035|ref|NP_001026016.1| SAM domain and HD domain-containing protein 1 [Gallus gallus] gi|82081678|sp|Q5ZJL9.1|SAMH1_CHICK RecName: Full=SAM domain and HD domain-containing protein 1 gi|53133490|emb|CAG32074.1| hypothetical protein RCJMB04_17d8 [Gallus gallus] Back     alignment and taxonomy information
>gi|355717809|gb|AES06058.1| SAM domain and HD domain 1 [Mustela putorius furo] Back     alignment and taxonomy information
>gi|301758729|ref|XP_002915216.1| PREDICTED: SAM domain and HD domain-containing protein 1-like [Ailuropoda melanoleuca] Back     alignment and taxonomy information
>gi|377652588|gb|AFB71185.1| SAM domain and HD domain-containing protein 1 [Pithecia pithecia] Back     alignment and taxonomy information
>gi|281339265|gb|EFB14849.1| hypothetical protein PANDA_003178 [Ailuropoda melanoleuca] Back     alignment and taxonomy information
>gi|327271630|ref|XP_003220590.1| PREDICTED: SAM domain and HD domain-containing protein 1-like [Anolis carolinensis] Back     alignment and taxonomy information
>gi|293346443|ref|XP_001067782.2| PREDICTED: SAM domain and HD domain-containing protein 1 [Rattus norvegicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query294
DICTYBASE|DDB_G0272484 514 DDB_G0272484 "HD phosphohydrol 0.857 0.490 0.392 5.4e-47
UNIPROTKB|F1P0T3 618 SAMHD1 "SAM domain and HD doma 0.564 0.268 0.537 4.5e-43
UNIPROTKB|Q5ZJL9 614 SAMHD1 "SAM domain and HD doma 0.564 0.270 0.537 4.5e-43
RGD|1308369 621 Samhd1 "SAM domain and HD doma 0.517 0.244 0.540 5.7e-43
MGI|MGI:1927468 627 Samhd1 "SAM domain and HD doma 0.517 0.242 0.534 1.2e-42
TAIR|locus:2173797 473 AT5G40270 [Arabidopsis thalian 0.840 0.522 0.402 1.2e-42
UNIPROTKB|Q9Y3Z3 626 SAMHD1 "SAM domain and HD doma 0.564 0.265 0.514 3.6e-41
UNIPROTKB|E2QTR2 627 SAMHD1 "Uncharacterized protei 0.564 0.264 0.491 4.5e-40
ZFIN|ZDB-GENE-090313-386 622 samhd1 "SAM domain and HD doma 0.547 0.258 0.511 5.4e-40
UNIPROTKB|F1SEM6237 F1SEM6 "Uncharacterized protei 0.530 0.658 0.521 6.8e-40
DICTYBASE|DDB_G0272484 DDB_G0272484 "HD phosphohydrolase domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 104/265 (39%), Positives = 155/265 (58%)

Query:     6 KIFNDSVHGHMKFHPICVAIIDTPQFQRLRNIKQTSTTYLVYPGACHNRFEHSLGVSYLG 65
             KI ND +HGHM+     +  IDT QFQRLR++KQ  TT  V+P A H+RFEHS+GVS+L 
Sbjct:    80 KIINDVIHGHMEVPDYIMDFIDTEQFQRLRDLKQVGTTSFVFPCASHSRFEHSIGVSHLA 139

Query:    66 GCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRF--DSHWKHEQG 123
             G  +D +    P L IT  E+  V +AGLCHDLGHGPFSH +E ++ +      + HE  
Sbjct:   140 GKYIDRIKVTQPELEITEREQKFVRIAGLCHDLGHGPFSHAFESWVDQLGGSKRFHHEDM 199

Query:   124 SEEVLDYLIEDNKLGPLFESYNLNLNLIKELIRGGGESLPADKRFLYQIIANKETDIDVD 183
             S ++L+++I+D+ L   ++S ++    I  LI+G  +  P ++ F+Y I+AN    +DVD
Sbjct:   200 SIKMLNWIIDDHGLDE-YDSDDIKF--ISSLIQG--KHRPKERAFIYDIVANNRNSVDVD 254

Query:   184 KWDYFLRDGHQLNLKITFDYRRLLSFCTVVKRPTDSGPTIAFRNKEASNIFDMFRVRADL 243
             K+DY  RD + L      D++RL+ F  V+    D    I F +KE  N++++F  R  L
Sbjct:   255 KFDYLSRDSYYLGRSTVCDFQRLMEFSKVID---DQ---ICFLSKEIYNLYELFHTRYSL 308

Query:   244 HLRAYQHCATKNTELVRRPSIDEVN 268
             H   Y H   K+ E +   +  E +
Sbjct:   309 HKLVYTHKVGKSIEFMIADAFTEAD 333
GO:0046872 "metal ion binding" evidence=IEA
GO:0008152 "metabolic process" evidence=IEA
GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
GO:0008150 "biological_process" evidence=ND
GO:0005575 "cellular_component" evidence=ND
GO:0016787 "hydrolase activity" evidence=IEA
UNIPROTKB|F1P0T3 SAMHD1 "SAM domain and HD domain-containing protein 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZJL9 SAMHD1 "SAM domain and HD domain-containing protein 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1308369 Samhd1 "SAM domain and HD domain, 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1927468 Samhd1 "SAM domain and HD domain, 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
TAIR|locus:2173797 AT5G40270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y3Z3 SAMHD1 "SAM domain and HD domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2QTR2 SAMHD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-090313-386 samhd1 "SAM domain and HD domain 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1SEM6 F1SEM6 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5ZJL9SAMH1_CHICK3, ., 1, ., 4, ., -0.52090.82650.3957yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query294
COG1078 421 COG1078, COG1078, HD superfamily phosphohydrolases 1e-48
smart00471124 smart00471, HDc, Metal dependent phosphohydrolases 7e-10
cd00077145 cd00077, HDc, Metal dependent phosphohydrolases wi 3e-09
pfam01966111 pfam01966, HD, HD domain 4e-06
COG0232 412 COG0232, Dgt, dGTP triphosphohydrolase [Nucleotide 3e-05
PRK03007 428 PRK03007, PRK03007, deoxyguanosinetriphosphate tri 7e-05
TIGR01353 381 TIGR01353, dGTP_triPase, deoxyguanosinetriphosphat 4e-04
>gnl|CDD|224004 COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only] Back     alignment and domain information 
 Score =  166 bits (422), Expect = 1e-48
 Identities = 85/257 (33%), Positives = 131/257 (50%), Gaps = 20/257 (7%)

Query: 6   KIFNDSVHGHMKFHPICVAIIDTPQFQRLRNIKQTSTTYLVYPGACHNRFEHSLGVSYLG 65
           K+  D VHG+++   + + +IDTP+FQRLR IKQ    YLVYPGA H RFEHSLGV +L 
Sbjct: 4   KVIKDPVHGYIELDELILELIDTPEFQRLRRIKQLGLAYLVYPGANHTRFEHSLGVYHLA 63

Query: 66  GCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSE 125
             +++ L  N     I  EE+L V LA L HD+GHGPFSHT+E  L + +  + HE  ++
Sbjct: 64  RRLLEHLEKN-SEEEIDEEERLLVRLAALLHDIGHGPFSHTFEYVLDK-NLGFYHEDVTQ 121

Query: 126 EVL-DYLIEDN-KLGPLFESYNLNLNLIKELIRGGGESLPADKRFLYQIIANKETDIDVD 183
            ++ +  IE N  L  + + +  +   + E++ G    +        QII    +++D D
Sbjct: 122 RIIKNGEIEINLVLNKILDKHGFDPADVIEILYGDSNKVLV------QII---SSELDAD 172

Query: 184 KWDYFLRDGHQLNLKI-TFDYRRLLSFCTVVKRPTDSGPTIAFRNKEASNIFDMFRVRAD 242
           + DY LRD +   +     D  R+L     V R  +    +    K    I      R  
Sbjct: 173 RMDYLLRDSYYTGVSYGLIDLERILR----VLRVVEGR--LVISEKGIEAIESFLISRYL 226

Query: 243 LHLRAYQHCATKNTELV 259
           ++ + Y H  ++  E +
Sbjct: 227 MYQQVYFHPVSRIAEAM 243

Length = 421
>gnl|CDD|214679 smart00471, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>gnl|CDD|238032 cd00077, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>gnl|CDD|216815 pfam01966, HD, HD domain Back     alignment and domain information
>gnl|CDD|223310 COG0232, Dgt, dGTP triphosphohydrolase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|235098 PRK03007, PRK03007, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional Back     alignment and domain information
>gnl|CDD|233370 TIGR01353, dGTP_triPase, deoxyguanosinetriphosphate triphosphohydrolase, putative Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 294
COG1078 421 HD superfamily phosphohydrolases [General function 100.0
KOG2681|consensus 498 100.0
PRK01286336 deoxyguanosinetriphosphate triphosphohydrolase-lik 99.95
TIGR01353381 dGTP_triPase deoxyguanosinetriphosphate triphospho 99.92
PRK05318 432 deoxyguanosinetriphosphate triphosphohydrolase-lik 99.89
PRK01096 440 deoxyguanosinetriphosphate triphosphohydrolase-lik 99.85
PRK04926 503 dgt deoxyguanosinetriphosphate triphosphohydrolase 99.8
PRK03007 428 deoxyguanosinetriphosphate triphosphohydrolase-lik 99.77
COG0232 412 Dgt dGTP triphosphohydrolase [Nucleotide transport 99.58
PF01966122 HD: HD domain; InterPro: IPR006674 This domain is 99.19
cd00077145 HDc Metal dependent phosphohydrolases with conserv 98.91
TIGR00488158 putative HD superfamily hydrolase of NAD metabolis 98.59
PRK10119231 putative hydrolase; Provisional 98.53
smart00471124 HDc Metal dependent phosphohydrolases with conserv 98.44
TIGR03401228 cyanamide_fam HD domain protein, cyanamide hydrata 97.94
COG1418222 Predicted HD superfamily hydrolase [General functi 97.92
TIGR00295164 conserved hypothetical protein TIGR00295. This set 97.87
TIGR03276179 Phn-HD phosphonate degradation operons associated 97.67
PRK07152342 nadD putative nicotinate-nucleotide adenylyltransf 97.55
PRK12703339 tRNA 2'-O-methylase; Reviewed 97.42
COG1713187 Predicted HD superfamily hydrolase involved in NAD 97.33
TIGR03319514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 97.13
PRK00106535 hypothetical protein; Provisional 97.0
PF00233237 PDEase_I: 3'5'-cyclic nucleotide phosphodiesterase 96.87
PRK12704520 phosphodiesterase; Provisional 96.72
TIGR0027780 HDIG uncharacterized domain HDIG. This domain is f 96.59
PRK13480314 3'-5' exoribonuclease YhaM; Provisional 96.57
TIGR01596177 cas3_HD CRISPR-associated endonuclease Cas3-HD. CR 96.39
PRK00227693 glnD PII uridylyl-transferase; Provisional 96.38
PRK04374 869 PII uridylyl-transferase; Provisional 96.3
PRK03381 774 PII uridylyl-transferase; Provisional 96.28
PRK05092 931 PII uridylyl-transferase; Provisional 96.16
PRK01759 854 glnD PII uridylyl-transferase; Provisional 96.1
PRK03059 856 PII uridylyl-transferase; Provisional 96.06
COG2206344 c-di-GMP phosphodiesterase class II (HD-GYP domain 96.05
TIGR03760218 ICE_TraI_Pfluor integrating conjugative element re 95.83
PRK12705508 hypothetical protein; Provisional 95.79
PRK00275 895 glnD PII uridylyl-transferase; Provisional 95.71
TIGR01693 850 UTase_glnD [Protein-PII] uridylyltransferase. This 95.57
COG4341186 Predicted HD phosphohydrolase [General function pr 95.49
PRK05007 884 PII uridylyl-transferase; Provisional 95.34
COG1896193 Predicted hydrolases of HD superfamily [General fu 94.71
PRK13298417 tRNA CCA-pyrophosphorylase; Provisional 94.71
TIGR02692466 tRNA_CCA_actino tRNA adenylyltransferase. The enzy 94.71
PRK10885409 cca multifunctional tRNA nucleotidyl transferase/2 94.63
KOG3689|consensus707 94.15
PRK11031496 guanosine pentaphosphate phosphohydrolase; Provisi 93.53
PRK10854513 exopolyphosphatase; Provisional 93.4
COG2844 867 GlnD UTP:GlnB (protein PII) uridylyltransferase [P 93.25
COG1480700 Predicted membrane-associated HD superfamily hydro 89.78
COG3437360 Response regulator containing a CheY-like receiver 89.52
TIGR02621844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 87.66
PF08668196 HDOD: HDOD domain; InterPro: IPR013976 This domain 86.92
PF13023165 HD_3: HD domain; PDB: 1XX7_D 2GZ4_B 4DMB_B. 81.8
PRK03826195 5'-nucleotidase; Provisional 81.27
>COG1078 HD superfamily phosphohydrolases [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1e-74  Score=563.31  Aligned_cols=267  Identities=32%  Similarity=0.508  Sum_probs=225.5

Q ss_pred             CCceecCCCCcceecchhHHHHhcCHHHHHhhhhhccCceeeeccCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCCH
Q psy13612          4 NHKIFNDSVHGHMKFHPICVAIIDTPQFQRLRNIKQTSTTYLVYPGACHNRFEHSLGVSYLGGCMVDALVHNTPGLHITA   83 (294)
Q Consensus         4 ~~k~i~DpvhG~I~l~~~~~~IIdtp~FQRLr~I~QLg~~~~VyP~a~HtRfeHSLGV~hla~~~~~~l~~~~~~~~i~~   83 (294)
                      .+|+|+|||||+|++++++.+|||||+|||||+|||||++++|||||+||||||||||||||+++++.|..+.. ..+++
T Consensus         2 ~~K~ikDpVHg~I~l~~~i~~LIdT~~FQRLRrIkQLG~a~lvyPgAnHTRFeHSLGV~~la~~~~~~l~~~~~-~~~~~   80 (421)
T COG1078           2 MEKVIKDPVHGYIELDELILELIDTPEFQRLRRIKQLGLAYLVYPGANHTRFEHSLGVYHLARRLLEHLEKNSE-EEIDE   80 (421)
T ss_pred             CceEeecCcCceEEcCHHHHHHhCCHHHHHHHHhhhccceeEecCCCcccccchhhHHHHHHHHHHHHHhhccc-cccch
Confidence            47999999999999999999999999999999999999999999999999999999999999999999987653 45666


Q ss_pred             HHHHHHHHHHhhhhcCCCCCCchhhHhhhccCCCCccccccHHHHHHhhhcccch------hHHhhcCCCHHHHHHHHhC
Q psy13612         84 EEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSEEVLDYLIEDNKLG------PLFESYNLNLNLIKELIRG  157 (294)
Q Consensus        84 ~~~~~v~iAALLHDiGHgPFSH~~E~~l~~~~~~~~HE~~s~~i~~~li~~~~l~------~~l~~~~~~~~~I~~~I~g  157 (294)
                      .++..+++||||||||||||||+||.++.... ...||+.+.++    +.+++..      +++.++++++..|.+.+.|
T Consensus        81 ~~~~~~~~AALLHDIGHgPFSH~fE~~~~~~~-~~~He~~~~~i----i~~~~~e~~~~~~~i~~~~~~~~~~v~~~~~~  155 (421)
T COG1078          81 EERLLVRLAALLHDIGHGPFSHTFEYVLDKNL-GFYHEDVTQRI----IKNGEIEINLVLNKILDKHGFDPADVIEILYG  155 (421)
T ss_pred             HHHHHHHHHHHHHccCCCccccchHHHhcccc-cccHHHHHHHH----hcCCchhhhhHHhhhhhhcCcCHHHHHhhcCC
Confidence            77889999999999999999999999774332 23598876554    4444544      7788888887666666543


Q ss_pred             CCCCCCCchhhHHHhhhcCCCCCCcccccccccccccccccc-CccHHHHhhhceeeecCCCCCceEEeccccHHHHHHH
Q psy13612        158 GGESLPADKRFLYQIIANKETDIDVDKWDYFLRDGHQLNLKI-TFDYRRLLSFCTVVKRPTDSGPTIAFRNKEASNIFDM  236 (294)
Q Consensus       158 ~~~~~~~~~~~l~~Ivs~~~~~lDaDrlDYl~RDs~~~G~~~-~~D~~rLi~~~~v~~~~~~g~~~l~~~~k~~~~ie~~  236 (294)
                      ..      ..++.+|+|   ++|||||||||+||||+||+.+ .+|++||++.+++.+.      .|++.+||+.++|+|
T Consensus       156 ~~------~~~~~~iis---s~lDaDRmDYL~RDsy~tGv~~g~iD~~Ril~~l~~~~~------~lv~~~kgi~aiE~~  220 (421)
T COG1078         156 DS------NKVLVQIIS---SELDADRMDYLLRDSYYTGVSYGLIDLERILRVLRVVEG------RLVISEKGIEAIESF  220 (421)
T ss_pred             cc------chhhhhhhc---CCcCcchHHHHHHhhhhhcCccCcccHHHHhhheEEeCC------EEEEecccHHHHHHH
Confidence            22      557889998   5999999999999999999985 8999999999998653      399999999999999


Q ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHHHHHhHhhccCC---CCCc-ccchhHHHHHHhh
Q psy13612        237 FRVRADLHLRAYQHCATKNTELVRRPSIDEVNLCCRGS---VDGF-NRSTAFDYVWRQL  291 (294)
Q Consensus       237 ~~~R~~m~~~VY~H~~~r~~e~ml~~~l~~a~~~~~~~---~d~~-~~~~~~~~~~~~~  291 (294)
                      +.+|++||.+||+||++++++.||.++|..|..+++..   ++.. ..+..+.-.|+.+
T Consensus       221 LisR~~MY~~VY~H~~~r~~~~mL~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  279 (421)
T COG1078         221 LISRYLMYQQVYFHPVSRIAEAMLRRALKRAIELYDLDFDAEEFRRLDDFELLALLRDL  279 (421)
T ss_pred             HHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHhccccccccchhccChhHHHHHHHhc
Confidence            99999999999999999999999999999998887655   3222 3333335556554

>KOG2681|consensus Back     alignment and domain information
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional Back     alignment and domain information
>TIGR01353 dGTP_triPase deoxyguanosinetriphosphate triphosphohydrolase, putative Back     alignment and domain information
>PRK05318 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional Back     alignment and domain information
>PRK01096 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional Back     alignment and domain information
>PRK04926 dgt deoxyguanosinetriphosphate triphosphohydrolase; Provisional Back     alignment and domain information
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional Back     alignment and domain information
>COG0232 Dgt dGTP triphosphohydrolase [Nucleotide transport and metabolism] Back     alignment and domain information
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity [] Back     alignment and domain information
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism Back     alignment and domain information
>PRK10119 putative hydrolase; Provisional Back     alignment and domain information
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family Back     alignment and domain information
>COG1418 Predicted HD superfamily hydrolase [General function prediction only] Back     alignment and domain information
>TIGR00295 conserved hypothetical protein TIGR00295 Back     alignment and domain information
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein Back     alignment and domain information
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated Back     alignment and domain information
>PRK12703 tRNA 2'-O-methylase; Reviewed Back     alignment and domain information
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism] Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>PF00233 PDEase_I: 3'5'-cyclic nucleotide phosphodiesterase; InterPro: IPR002073 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>TIGR00277 HDIG uncharacterized domain HDIG Back     alignment and domain information
>PRK13480 3'-5' exoribonuclease YhaM; Provisional Back     alignment and domain information
>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD Back     alignment and domain information
>PRK00227 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms] Back     alignment and domain information
>TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family Back     alignment and domain information
>PRK12705 hypothetical protein; Provisional Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>COG4341 Predicted HD phosphohydrolase [General function prediction only] Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>COG1896 Predicted hydrolases of HD superfamily [General function prediction only] Back     alignment and domain information
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase Back     alignment and domain information
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed Back     alignment and domain information
>KOG3689|consensus Back     alignment and domain information
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional Back     alignment and domain information
>PRK10854 exopolyphosphatase; Provisional Back     alignment and domain information
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only] Back     alignment and domain information
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>PF08668 HDOD: HDOD domain; InterPro: IPR013976 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity Back     alignment and domain information
>PF13023 HD_3: HD domain; PDB: 1XX7_D 2GZ4_B 4DMB_B Back     alignment and domain information
>PRK03826 5'-nucleotidase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query294
3u1n_A 528 Structure Of The Catalytic Core Of Human Samhd1 Len 8e-65
2hek_A371 Crystal Structure Of O67745, A Hypothetical Protein 2e-21
2o6i_A 480 Structure Of An Enterococcus Faecalis Hd Domain Pho 4e-20
2q14_A 410 Crystal Structure Of Phosphohydrolase (Bt4208) From 7e-19
>pdb|3U1N|A Chain A, Structure Of The Catalytic Core Of Human Samhd1 Length = 528 Back     alignment and structure 
Iteration: 1

 Score =  243 bits (620), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 128/259 (49%), Positives = 161/259 (62%), Gaps = 20/259 (7%)
Query: 10  DSVHGHMKFHPICVAIIDTPQFQRLRNIKQTSTTYLVYPGACHNRFEHSLGVSYLGGCMV 69
           D +HGH++ HP+ V IIDTPQFQRLR IKQ    Y V+PGA HNRFEHSLGV YL GC+V
Sbjct: 22  DPIHGHIELHPLLVRIIDTPQFQRLRYIKQLGGGYYVFPGASHNRFEHSLGVGYLAGCLV 81
Query: 70  DALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWE-KF--LRRFDSHWKHEQGSEE 126
            AL    P L I+  + L V++AGLCHDLGHGPFSH ++ +F  L R +  W HEQGS  
Sbjct: 82  HALGEKQPELQISERDVLCVQIAGLCHDLGHGPFSHXFDGRFIPLARPEVKWTHEQGSVX 141
Query: 127 VLDYLIEDNKLGPLFESYNL----NLNLIKELIRGGGES-----------LPADKRFLYQ 171
             ++LI  N + P+ E Y L    ++  IKE I G  ES            P +K FLY+
Sbjct: 142 XFEHLINSNGIKPVXEQYGLIPEEDICFIKEQIVGPLESPVEDSLWPYKGRPENKSFLYE 201
Query: 172 IIANKETDIDVDKWDYFLRDGHQLNLKITFDYRRLLSFCTVVKRPTDSGPTIAFRNKEAS 231
           I++NK   IDVDKWDYF RD H L ++  FDY+R + F  V +   D+   I  R+KE  
Sbjct: 202 IVSNKRNGIDVDKWDYFARDCHHLGIQNNFDYKRFIKFARVCE--VDNELRICARDKEVG 259
Query: 232 NIFDMFRVRADLHLRAYQH 250
           N++D F  R  LH RAYQH
Sbjct: 260 NLYDXFHTRNSLHRRAYQH 278
>pdb|2HEK|A Chain A, Crystal Structure Of O67745, A Hypothetical Protein From Aquifex Aeolicus At 2.0 A Resolution. Length = 371 Back     alignment and structure
>pdb|2O6I|A Chain A, Structure Of An Enterococcus Faecalis Hd Domain Phosphohydrolase Length = 480 Back     alignment and structure
>pdb|2Q14|A Chain A, Crystal Structure Of Phosphohydrolase (Bt4208) From Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A Resolution Length = 410 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query294
3u1n_A 528 SAM domain and HD domain-containing protein 1; deo 1e-79
2hek_A 371 Hypothetical protein; predominantly alpha helical 2e-74
2q14_A 410 Phosphohydrolase; BT4208, HD domain, structural ge 1e-68
3irh_A 480 HD domain protein; phosphohydrolase, dntpase, stru 3e-61
2pgs_A 451 Putative deoxyguanosinetriphosphate triphosphohyd; 4e-06
3bg2_A 444 DGTP triphosphohydrolase; structural genomics, NYS 5e-06
2dqb_A376 Deoxyguanosinetriphosphate triphosphohydrolase, P; 7e-04
>3u1n_A SAM domain and HD domain-containing protein 1; deoxynucleotide triphosphohydrolase, hydrolase; 3.10A {Homo sapiens} Length = 528 Back     alignment and structure
 Score =  249 bits (637), Expect = 1e-79
 Identities = 125/276 (45%), Positives = 160/276 (57%), Gaps = 20/276 (7%)

Query: 1   MPANHKIFNDSVHGHMKFHPICVAIIDTPQFQRLRNIKQTSTTYLVYPGACHNRFEHSLG 60
           +    +   D +HGH++ HP+ V IIDTPQFQRLR IKQ    Y V+PGA HNRFEHSLG
Sbjct: 13  LEVLFQGPGDPIHGHIELHPLLVRIIDTPQFQRLRYIKQLGGGYYVFPGASHNRFEHSLG 72

Query: 61  VSYLGGCMVDALVHNTPGLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLR---RFDSH 117
           V YL GC+V AL    P L I+  + L V++AGLCHDLGHGPFSH ++       R +  
Sbjct: 73  VGYLAGCLVHALGEKQPELQISERDVLCVQIAGLCHDLGHGPFSHMFDGRFIPLARPEVK 132

Query: 118 WKHEQGSEEVLDYLIEDNKLGPLFESYNLN----LNLIKELIRG-----------GGESL 162
           W HEQGS  + ++LI  N + P+ E Y L     +  IKE I G             +  
Sbjct: 133 WTHEQGSVMMFEHLINSNGIKPVMEQYGLIPEEDICFIKEQIVGPLESPVEDSLWPYKGR 192

Query: 163 PADKRFLYQIIANKETDIDVDKWDYFLRDGHQLNLKITFDYRRLLSFCTVVKRPTDSGPT 222
           P +K FLY+I++NK   IDVDKWDYF RD H L ++  FDY+R + F  V     D+   
Sbjct: 193 PENKSFLYEIVSNKRNGIDVDKWDYFARDCHHLGIQNNFDYKRFIKFARVC--EVDNELR 250

Query: 223 IAFRNKEASNIFDMFRVRADLHLRAYQHCATKNTEL 258
           I  R+KE  N++DMF  R  LH RAYQH      + 
Sbjct: 251 ICARDKEVGNLYDMFHTRNSLHRRAYQHKVGNIIDT 286
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1 Length = 371 Back     alignment and structure
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482} Length = 410 Back     alignment and structure
>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, P protein structure initiative, midwest center for structural genomics; HET: DGT DTP; 2.40A {Enterococcus faecalis} PDB: 2o6i_A* Length = 480 Back     alignment and structure
>2pgs_A Putative deoxyguanosinetriphosphate triphosphohyd; deoxyguanosinetriphosphate triphsphohydrolase, pseudomonas S PV. phaseolicola 1448A; 2.35A {Pseudomonas syringae PV} Length = 451 Back     alignment and structure
>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target 10395N, triphosphohydro PSI-2, protein structure initiative; 1.95A {Leeuwenhoekiella blandensis} Length = 444 Back     alignment and structure
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus} Length = 376 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query294
3u1n_A 528 SAM domain and HD domain-containing protein 1; deo 100.0
3irh_A 480 HD domain protein; phosphohydrolase, dntpase, stru 100.0
2q14_A 410 Phosphohydrolase; BT4208, HD domain, structural ge 100.0
2hek_A 371 Hypothetical protein; predominantly alpha helical 100.0
2dqb_A376 Deoxyguanosinetriphosphate triphosphohydrolase, P; 99.97
3bg2_A 444 DGTP triphosphohydrolase; structural genomics, NYS 99.95
2pgs_A 451 Putative deoxyguanosinetriphosphate triphosphohyd; 99.94
3b57_A209 LIN1889 protein; Q92AN1, X-RAY, NESG, structural g 98.64
3dto_A223 BH2835 protein; all alpha-helical protein, structu 98.62
2pq7_A220 Predicted HD superfamily hydrolase; 104161995, HD 98.62
3djb_A223 Hydrolase, HD family; all alpha-helical protein., 98.6
3gw7_A239 Uncharacterized protein YEDJ; all alpha-helical pr 98.44
2pjq_A231 Uncharacterized protein LP_2664; LPR71, NESG, stru 98.35
2qgs_A225 Protein Se1688; alpha-helical protein, structural 98.23
3ccg_A190 HD superfamily hydrolase; NP_347894.1, HD domain, 98.21
2o08_A188 BH1327 protein; putative HD superfamily hydrolase, 98.12
2ogi_A196 Hypothetical protein SAG1661; structural genomics, 98.07
3tm8_A328 BD1817, uncharacterized protein; HD-GYP, phosphodi 96.87
2our_A331 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod 96.72
1zkl_A353 HCP1, TM22, high-affinity CAMP-specific 3',5'-cycl 96.6
3itu_A345 CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn- 96.59
3v93_A345 Cyclic nucleotide specific phosphodiesterase; para 96.51
1taz_A365 Calcium/calmodulin-dependent 3',5'-cyclic nucleot 96.49
2r8q_A359 Class I phosphodiesterase PDEB1; leishimaniasis, p 96.42
3ecm_A338 High affinity CAMP-specific and IBMX-insensitive 3 96.37
1tbf_A347 CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 96.31
1f0j_A377 PDE4B, phosphodiesterase 4B; PDE phosphodiesterase 96.28
3hr1_A380 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod 96.27
1y2k_A349 DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodi 96.13
3qi3_A533 High affinity CGMP-specific 3',5'-cyclic phosphod 96.07
3dyn_A329 High affinity CGMP-specific 3',5'-cyclic phosphod 95.98
3ibj_A691 CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE 95.98
3hc1_A305 Uncharacterized HDOD domain protein; HDOD domain p 95.79
3i7a_A281 Putative metal-dependent phosphohydrolase; YP_9268 95.6
3g4g_A421 DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodi 95.43
1so2_A420 CGMP-inhibited 3',5'-cyclic phosphodiesterase B; P 95.26
3bjc_A878 CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 95.18
3rf0_A209 Exopolyphosphatase; structural genomics, center fo 94.16
1vqr_A297 Hypothetical protein CJ0248; HD-domain/pdease-like 93.96
2cqz_A177 177AA long hypothetical protein; hypothetical prot 93.76
3sk9_A265 Putative uncharacterized protein TTHB187; crispr, 93.47
2paq_A201 5'-deoxynucleotidase YFBR; HD domain phosphoh stru 93.42
3mem_A457 Putative signal transduction protein; structural g 93.22
3kq5_A393 Hypothetical cytosolic protein; structural genomic 92.78
3m1t_A275 Putative phosphohydrolase; structural genomics, jo 91.06
2ibn_A250 Inositol oxygenase; reductase, DIIRON, structural 90.96
3ljx_A288 MMOQ response regulator; structural genomics, PSI- 90.81
3hi0_A508 Putative exopolyphosphatase; 17739545, structural 90.17
1u6z_A513 Exopolyphosphatase; alpha/beta protein, askha (ace 88.68
3m5f_A244 Metal dependent phosphohydrolase; CAS3, prokaryoti 87.97
1xx7_A184 Oxetanocin-like protein; PSI, secsg, protein struc 85.54
1ynb_A173 Hypothetical protein AF1432; structural genomics, 84.36
3mzo_A216 LIN2634 protein; HD-domain phosphohydrolase, struc 82.62
3aql_A415 Poly(A) polymerase; transferase/RNA, ATP-binding, 81.69
>3u1n_A SAM domain and HD domain-containing protein 1; deoxynucleotide triphosphohydrolase, hydrolase; 3.10A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=7.7e-76  Score=579.41  Aligned_cols=266  Identities=48%  Similarity=0.832  Sum_probs=243.2

Q ss_pred             CCceecCCCCcceecchhHHHHhcCHHHHHhhhhhccCceeeeccCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCCH
Q psy13612          4 NHKIFNDSVHGHMKFHPICVAIIDTPQFQRLRNIKQTSTTYLVYPGACHNRFEHSLGVSYLGGCMVDALVHNTPGLHITA   83 (294)
Q Consensus         4 ~~k~i~DpvhG~I~l~~~~~~IIdtp~FQRLr~I~QLg~~~~VyP~a~HtRfeHSLGV~hla~~~~~~l~~~~~~~~i~~   83 (294)
                      ..++++|||||+|++++.+.+||+||+|||||+|+|+|++++|||||+||||+|||||||+|+.+++.|..++|++.+++
T Consensus        16 ~~~~~~Dpvhg~I~l~~~~~riI~s~~FqRLr~i~Qlg~~~~v~pga~hTRf~HSLgV~~la~~i~~~l~~~~~~~~~~~   95 (528)
T 3u1n_A           16 LFQGPGDPIHGHIELHPLLVRIIDTPQFQRLRYIKQLGGGYYVFPGASHNRFEHSLGVGYLAGCLVHALGEKQPELQISE   95 (528)
T ss_dssp             ----CCBTTTBSCCCCHHHHHHHSSHHHHGGGGSBTTGGGTTTCTTCCCBHHHHHHHHHHHHHHHHHHHHHHCGGGCCCH
T ss_pred             ccccccCCCCcCEEeCHHHHHHhCCHHHhhccCccccCCcccccCCCCcCHHHHHHHHHHHHHHHHHHHHhhCcccCCCH
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhcCCCCCCchhhHhh---hccCCCCccccccHHHHHHhhhcccchhHHhhcCCC----HHHHHHHHh
Q psy13612         84 EEKLSVELAGLCHDLGHGPFSHTWEKFL---RRFDSHWKHEQGSEEVLDYLIEDNKLGPLFESYNLN----LNLIKELIR  156 (294)
Q Consensus        84 ~~~~~v~iAALLHDiGHgPFSH~~E~~l---~~~~~~~~HE~~s~~i~~~li~~~~l~~~l~~~~~~----~~~I~~~I~  156 (294)
                      .+..++++||||||||||||||++|..+   ..++.+|+||++|.+|++.|+.++++.++|+++|++    +.+|+++|.
T Consensus        96 ~d~~~v~~AaLlHDiGH~PFsH~~E~~~~~~~~~~~~~~HE~~S~~i~~~li~~~~i~~iL~~~g~~~~~~i~~I~~lI~  175 (528)
T 3u1n_A           96 RDVLCVQIAGLCHDLGHGPFSHMFDGRFIPLARPEVKWTHEQGSVMMFEHLINSNGIKPVMEQYGLIPEEDICFIKEQIV  175 (528)
T ss_dssp             HHHHHHHHHHHHTTTTCBTTBHHHHHTHHHHHCTTSCCCHHHHHHHHHHHHHHHTTCHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCCccchhhhhhhhhhcCCCCCCHHHHHHHHHHHHhccccHHHHHHHcCCCcHHHHHHHHHHhc
Confidence            9999999999999999999999999944   345568999999999999999999999999999986    466788898


Q ss_pred             CCCCC-----------CCCchhhHHHhhhcCCCCCCccccccccccccccccccCccHHHHhhhceeeecCCCCCceEEe
Q psy13612        157 GGGES-----------LPADKRFLYQIIANKETDIDVDKWDYFLRDGHQLNLKITFDYRRLLSFCTVVKRPTDSGPTIAF  225 (294)
Q Consensus       157 g~~~~-----------~~~~~~~l~~Ivs~~~~~lDaDrlDYl~RDs~~~G~~~~~D~~rLi~~~~v~~~~~~g~~~l~~  225 (294)
                      |....           ++.++.||++||+|.+|+|||||||||+|||++||+.++||++||++.++|++.  +|+..||+
T Consensus       176 G~~~~~~~~~~~~~~gr~~ek~fL~~IVsn~~s~lDvDRmDYLlRDs~~tGv~~~~D~~RLi~~~rv~~~--~~~~~I~~  253 (528)
T 3u1n_A          176 GPLESPVEDSLWPYKGRPENKSFLYEIVSNKRNGIDVDKWDYFARDCHHLGIQNNFDYKRFIKFARVCEV--DNELRICA  253 (528)
T ss_dssp             CCCC------CCCCSSSCGGGGGGGGSSCCTTTSCCHHHHHHHHHHHHHHTCCCCCCHHHHHHTEEEEES--SSSEEEEE
T ss_pred             CccccccccccccccCCcchhhHHHHHHhCCCCCCCccchhhHHHHHHHhCCCCCcCHHHHHhhcEEEec--CCCcEEEE
Confidence            86421           334578999999999999999999999999999999999999999999999875  66678999


Q ss_pred             ccccHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHhHhhc
Q psy13612        226 RNKEASNIFDMFRVRADLHLRAYQHCATKNTELVRRPSIDEVNLCC  271 (294)
Q Consensus       226 ~~k~~~~ie~~~~~R~~m~~~VY~H~~~r~~e~ml~~~l~~a~~~~  271 (294)
                      .+|++.++|+|+.+|+.||++||+||++|++|.||.+||.+|+..+
T Consensus       254 ~~k~~~~ie~~~~aR~~My~~VY~Hk~~ra~e~Ml~~al~~A~~~l  299 (528)
T 3u1n_A          254 RDKEVGNLYDMFHTRNSLHRRAYQHKVGNIIDTMITDAFLKADDYI  299 (528)
T ss_dssp             EGGGHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTTTC
T ss_pred             ecccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999999998754
>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, P protein structure initiative, midwest center for structural genomics; HET: DGT DTP; 2.40A {Enterococcus faecalis} PDB: 2o6i_A* Back     alignment and structure
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1 Back     alignment and structure
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus} Back     alignment and structure
>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target 10395N, triphosphohydro PSI-2, protein structure initiative; 1.95A {Leeuwenhoekiella blandensis} Back     alignment and structure
>2pgs_A Putative deoxyguanosinetriphosphate triphosphohyd; deoxyguanosinetriphosphate triphsphohydrolase, pseudomonas S PV. phaseolicola 1448A; 2.35A {Pseudomonas syringae PV} Back     alignment and structure
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1 Back     alignment and structure
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1 Back     alignment and structure
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1 Back     alignment and structure
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1 Back     alignment and structure
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12} Back     alignment and structure
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1 Back     alignment and structure
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1 Back     alignment and structure
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824} Back     alignment and structure
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans} Back     alignment and structure
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V} Back     alignment and structure
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A Back     alignment and structure
>2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A {Homo sapiens} PDB: 2ous_A 2ouu_A* 3sn7_A* 3sni_A* 3snl_A* 4dff_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A 2ouy_A* 4ael_A* 2y0j_A* 4ddl_A* 3uuo_A* 3ui7_A* 2o8h_A* 2ovv_A* 2ovy_A* ... Back     alignment and structure
>1zkl_A HCP1, TM22, high-affinity CAMP-specific 3',5'-cyclic phosphodiesterase 7A; PDE, hydrolase; HET: IBM; 1.67A {Homo sapiens} PDB: 3g3n_A* Back     alignment and structure
>3itu_A CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn-binding, all-alpha-helical, alternative splicing, hydrolase, membrane, polymorphism; HET: IBM; 1.58A {Homo sapiens} PDB: 3itm_A* 1z1l_A Back     alignment and structure
>3v93_A Cyclic nucleotide specific phosphodiesterase; parasite, phosphodiesterases,, hydrolase; 2.00A {Trypanosoma cruzi} PDB: 3v94_A* Back     alignment and structure
>1taz_A Calcium/calmodulin-dependent 3',5'-cyclic nucleot phosphodiesterase 1B; PDE1B, hydrolase; HET: CME; 1.77A {Homo sapiens} SCOP: a.211.1.2 Back     alignment and structure
>2r8q_A Class I phosphodiesterase PDEB1; leishimaniasis, parasite inhibitor selectivity, CAMP phosphodiesterase, hydrolase; HET: IBM; 1.50A {Leishmania major} Back     alignment and structure
>3ecm_A High affinity CAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8A...; phosphodiesterase 8A PDE8A inhibitor selectivity; 1.90A {Homo sapiens} SCOP: a.211.1.0 PDB: 3ecn_A* Back     alignment and structure
>1tbf_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5A, hydrolase; HET: VIA; 1.30A {Homo sapiens} SCOP: a.211.1.2 PDB: 1t9s_A* 1xoz_A* 1xp0_A* 2chm_A* 3tge_A* 3tgg_A* 3hc8_A* 3hdz_A* 1t9r_A* 3sie_A* 3shy_A* 3shz_A* 3b2r_A* 2h44_A* 2h42_A* 2h40_A* 1rkp_A* 1udt_A* 1udu_A* 1uho_A* ... Back     alignment and structure
>1f0j_A PDE4B, phosphodiesterase 4B; PDE phosphodiesterase, hydrolase; 1.77A {Homo sapiens} SCOP: a.211.1.2 PDB: 1ro6_A* 1ro9_A* 1ror_A* 3hmv_A* 1tb5_A* 1xm6_A* 1xlx_A* 1xm4_A* 1xlz_A* 1xmu_A* 1xmy_A* 1xn0_A* 1xos_A* 1xot_B* 1y2h_A* 1y2j_A* 3kkt_A* 3g4i_A* 3g4k_A* 3g4l_A* ... Back     alignment and structure
>3hr1_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE 10A, PDE10 inhibitors, allosteric enzyme, alternative splicing; HET: PF9; 1.53A {Rattus norvegicus} PDB: 3hqy_A* 3hqz_A* 3hqw_A* Back     alignment and structure
>1y2k_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, pyrazole, hydrolase; HET: 7DE; 1.36A {Homo sapiens} SCOP: a.211.1.2 PDB: 1xon_A* 1xoq_A* 1xom_A* 1xor_A* 1y2c_A* 1y2d_A* 1y2e_A* 1y2b_A* 3iak_A* 3k4s_A* 1tbb_A* 1tb7_A* 3sl5_A* 3sl4_A* 2fm5_A* 3sl3_A* 2fm0_A* 3sl6_A* 3sl8_A* 1oyn_A* ... Back     alignment and structure
>3qi3_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A; mutation, glutamine switch, hydrolase-hydrolase inhibitor CO; HET: PDB; 2.30A {Homo sapiens} PDB: 3qi4_A* Back     alignment and structure
>3dyn_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A; phophodiestrase, enzyme mechanism, hydrolase, manganes binding, phosphoprotein; HET: PCG IBM; 2.10A {Homo sapiens} SCOP: a.211.1.2 PDB: 3dyl_A* 3dy8_A* 3dyq_A* 3dys_A* 3jsi_A* 3jsw_A* 2yy2_A* 2hd1_A* 3k3e_A* 3k3h_A* 4gh6_A* 3n3z_A* Back     alignment and structure
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} Back     alignment and structure
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens} Back     alignment and structure
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B} Back     alignment and structure
>3g4g_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, UCR2, alternative splicing, cytoplasm, cytoskeleton, hydrolase, membrane; HET: D71; 2.30A {Homo sapiens} PDB: 3g45_A* Back     alignment and structure
>1so2_A CGMP-inhibited 3',5'-cyclic phosphodiesterase B; PDE3B phosphodiesterase, hydrolase; HET: HG9 666; 2.40A {Homo sapiens} SCOP: a.211.1.2 PDB: 1soj_A* Back     alignment and structure
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A* Back     alignment and structure
>3rf0_A Exopolyphosphatase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, hydrolase; HET: MSE; 1.80A {Yersinia pestis} Back     alignment and structure
>1vqr_A Hypothetical protein CJ0248; HD-domain/pdease-like fold, structural genomics, joint cente structural genomics, JCSG; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3 Back     alignment and structure
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} Back     alignment and structure
>3sk9_A Putative uncharacterized protein TTHB187; crispr, CAS, HD domain, nuclease, hydrolase; 1.80A {Thermus thermophilus HB8} PDB: 3skd_A Back     alignment and structure
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A* Back     alignment and structure
>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei} Back     alignment and structure
>3kq5_A Hypothetical cytosolic protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Coxiella burnetii} Back     alignment and structure
>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0 Back     alignment and structure
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4 Back     alignment and structure
>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A 3p3q_A Back     alignment and structure
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str} Back     alignment and structure
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A* Back     alignment and structure
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1 Back     alignment and structure
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A Back     alignment and structure
>3mzo_A LIN2634 protein; HD-domain phosphohydrolase, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.98A {Listeria innocua} Back     alignment and structure
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 294
d2o6ia1 453 a.211.1.1 (A:1-453) Hypothetical protein EF1143 {E 1e-54
d2heka1 369 a.211.1.1 (A:1-369) Hypothetical protein aq_1910 { 8e-46
>d2o6ia1 a.211.1.1 (A:1-453) Hypothetical protein EF1143 {Enterococcus faecalis [TaxId: 1351]} Length = 453 Back     information, alignment and structure

class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Hypothetical protein EF1143
species: Enterococcus faecalis [TaxId: 1351]

 Score =  181 bits (461), Expect = 1e-54
 Identities = 69/259 (26%), Positives = 110/259 (42%), Gaps = 27/259 (10%)

Query: 6   KIFNDSVHGHMKF-HPICVAIIDTPQFQRLRNIKQTSTTYLVYPGACHNRFEHSLGVSYL 64
           K+F D VH ++   H + + +I++ + QRLR IKQ  T+   + GA H+RF HSLGV  +
Sbjct: 14  KVFRDPVHNYIHVQHQVILDLINSAEVQRLRRIKQLGTSSFTFHGAEHSRFSHSLGVYEI 73

Query: 65  GGCMVDALVHNTP-----GLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWK 119
              + +    N             +E+L    A L HD+GHGP+SHT+E           
Sbjct: 74  TRRICEIFQRNYSVERLGENGWNDDERLITLCAALLHDVGHGPYSHTFEHIF-----DTN 128

Query: 120 HEQGSEEVLDYLIEDNKLGPLFESYNLNLNLIKELIRGGGESLPADKRFLYQIIANKETD 179
           HE  + +++    E      L          +  +I             + Q+I++    
Sbjct: 129 HEAITVQIITSP-ETEVYQILNRVSADFPEKVASVITKQYP-----NPQVVQMISS---Q 179

Query: 180 IDVDKWDYFLRDGHQLNLKI-TFDYRRLLSFCTVVKRPTDSGPTIAFRNKEASNIFDMFR 238
           ID D+ DY LRD +    +  TFD  R+L      K        IAF       + D   
Sbjct: 180 IDADRMDYLLRDAYFTGTEYGTFDLTRILRVIRPYKGG------IAFAMNGMHAVEDYIV 233

Query: 239 VRADLHLRAYQHCATKNTE 257
            R  ++++ Y H  ++  E
Sbjct: 234 SRYQMYVQVYFHPVSRGME 252
>d2heka1 a.211.1.1 (A:1-369) Hypothetical protein aq_1910 {Aquifex aeolicus [TaxId: 63363]} Length = 369 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query294
d2o6ia1 453 Hypothetical protein EF1143 {Enterococcus faecalis 100.0
d2heka1 369 Hypothetical protein aq_1910 {Aquifex aeolicus [Ta 100.0
d3djba1213 Uncharacterized protein BT9727_1981 {Bacillus thur 98.76
d3dtoa1212 Uncharacterized protein BH2835 {Bacillus haloduran 98.69
d3b57a1201 Uncharacterized protein Lin1889 {Listeria innocua 98.65
d2pq7a1217 Predicted hydrolase mes0020 {Uncultured thermotoga 98.59
d2qgsa1216 Uncharacterized protein SE1688 {Staphylococcus epi 98.58
d2pjqa1215 Uncharacterized protein LP2664 {Lactobacillus plan 98.44
d3dy8a1324 High-affinity cGMP-specific 3',5'-cyclic phosphodi 97.0
d1taza_357 Catalytic domain of cyclic nucleotide phosphodiest 96.89
d1y2ka1326 Catalytic domain of cyclic nucleotide phosphodiest 96.69
d1tbfa_326 cGMP-specific 3',5'-cyclic phosphodiesterase pde5a 96.33
d1so2a_415 cGMP-inhibited 3',5'-cyclic phosphodiesterase B, p 95.99
d1u6za1197 Exopolyphosphatase Ppx C-terminal domain {Escheric 95.26
d1xx7a_172 Oxetanocin-like protein PF0395 {Pyrococcus furiosu 87.72
d1ynba1167 Hypothetical protein AF1432 {Archaeon Archaeoglobu 84.84
d2paqa1186 5'-nucleotidase YfbR {Escherichia coli [TaxId: 562 80.83
d1vqra_286 Hypothetical protein Cj0248 {Campylobacter jejuni 80.24
>d2o6ia1 a.211.1.1 (A:1-453) Hypothetical protein EF1143 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Hypothetical protein EF1143
species: Enterococcus faecalis [TaxId: 1351]

Probab=100.00  E-value=6.8e-75  Score=567.75  Aligned_cols=250  Identities=26%  Similarity=0.421  Sum_probs=224.3

Q ss_pred             CCceecCCCCcceecc-hhHHHHhcCHHHHHhhhhhccCceeeeccCCCCCchhhHHHHHHHHHHHHHHHHHcCC-----
Q psy13612          4 NHKIFNDSVHGHMKFH-PICVAIIDTPQFQRLRNIKQTSTTYLVYPGACHNRFEHSLGVSYLGGCMVDALVHNTP-----   77 (294)
Q Consensus         4 ~~k~i~DpvhG~I~l~-~~~~~IIdtp~FQRLr~I~QLg~~~~VyP~a~HtRfeHSLGV~hla~~~~~~l~~~~~-----   77 (294)
                      ..|+|+|||||+|+++ +.+++|||||+|||||+|||||++++|||||+||||||||||||||++++++|+++++     
T Consensus        12 ~~k~~~Dpihg~I~~~~~~~~~lidt~~fQRLr~I~Qlg~~~~v~pgA~HtRfeHSLGv~~la~~~~~~l~~~~~~~~~~   91 (453)
T d2o6ia1          12 IEKVFRDPVHNYIHVQHQVILDLINSAEVQRLRRIKQLGTSSFTFHGAEHSRFSHSLGVYEITRRICEIFQRNYSVERLG   91 (453)
T ss_dssp             EEEEEEETTTEEEEEEEHHHHHHHTSHHHHGGGGSBSSSGGGGTSTTCCCBHHHHHHHHHHHHHHHHHHHHHHSBHHHHG
T ss_pred             CCcEEecCCcccEEeCHHHHHHHcCCHhHhhhcccccCCCcccccCCCccCchhHHHHHHHHHHHHHHHHHhcccccccc
Confidence            4699999999999997 5789999999999999999999999999999999999999999999999999998765     


Q ss_pred             CCCCCHHHHHHHHHHHhhhhcCCCCCCchhhHhhhccCCCCccccccHHHHHHhhhcccchhHHhhcCCC-HHHHHHHHh
Q psy13612         78 GLHITAEEKLSVELAGLCHDLGHGPFSHTWEKFLRRFDSHWKHEQGSEEVLDYLIEDNKLGPLFESYNLN-LNLIKELIR  156 (294)
Q Consensus        78 ~~~i~~~~~~~v~iAALLHDiGHgPFSH~~E~~l~~~~~~~~HE~~s~~i~~~li~~~~l~~~l~~~~~~-~~~I~~~I~  156 (294)
                      +.++++.+++++++||||||||||||||+||.+.     ++.||.+|.+++..+  ..++..++++.+.+ ++.|+++|.
T Consensus        92 ~~~~~~~~~~~v~~AaLlHDiGHgPfSH~~E~~~-----~~~he~~~~~i~~~~--~~~~~~~l~~~~~~~~~~v~~~i~  164 (453)
T d2o6ia1          92 ENGWNDDERLITLCAALLHDVGHGPYSHTFEHIF-----DTNHEAITVQIITSP--ETEVYQILNRVSADFPEKVASVIT  164 (453)
T ss_dssp             GGSBCGGGHHHHHHHHHHTTTTCCTTHHHHHHHS-----CCCHHHHHHHHHHCT--TSHHHHHHHTTCTTHHHHHHHHHT
T ss_pred             ccCCCHHHHHHHHHHHHHhccCcccccccccccc-----cccchHHHHHHHHhh--hhhHHHHHHHhccccHHHHHHHHc
Confidence            4678899999999999999999999999999864     678999999886532  34566778888877 888999998


Q ss_pred             CCCCCCCCchhhHHHhhhcCCCCCCcccccccccccccccccc-CccHHHHhhhceeeecCCCCCceEEeccccHHHHHH
Q psy13612        157 GGGESLPADKRFLYQIIANKETDIDVDKWDYFLRDGHQLNLKI-TFDYRRLLSFCTVVKRPTDSGPTIAFRNKEASNIFD  235 (294)
Q Consensus       157 g~~~~~~~~~~~l~~Ivs~~~~~lDaDrlDYl~RDs~~~G~~~-~~D~~rLi~~~~v~~~~~~g~~~l~~~~k~~~~ie~  235 (294)
                      |..     +..++.+++++   +|||||||||+|||++||+++ .+|++||++++++.+    +  .+|+.+|++.++|+
T Consensus       165 ~~~-----~~~~l~~~is~---~lD~DrlDYl~RDs~~~Gv~~g~~d~~rli~~~~~~~----~--~l~~~~k~~~~ie~  230 (453)
T d2o6ia1         165 KQY-----PNPQVVQMISS---QIDADRMDYLLRDAYFTGTEYGTFDLTRILRVIRPYK----G--GIAFAMNGMHAVED  230 (453)
T ss_dssp             TCS-----SCHHHHHHHSS---SSCHHHHHHHHHHHHHHTCGGGCCCHHHHHHHEEEET----T--EEEEEGGGHHHHHH
T ss_pred             CCC-----cchhhhhhhcc---CcccchHhhhhhhhhhhccccCchhHHHHHHhCeecc----c--eeEechhhHHHHHH
Confidence            754     34568888884   899999999999999999996 899999999999864    2  59999999999999


Q ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHhHhhccCC
Q psy13612        236 MFRVRADLHLRAYQHCATKNTELVRRPSIDEVNLCCRGS  274 (294)
Q Consensus       236 ~~~~R~~m~~~VY~H~~~r~~e~ml~~~l~~a~~~~~~~  274 (294)
                      |+.+|+.||++||+||+++++|.|+++++..|+..+...
T Consensus       231 ~~~~R~~my~~VY~H~~~~~~e~ml~~~l~~~~~~~~~~  269 (453)
T d2o6ia1         231 YIVSRYQMYVQVYFHPVSRGMEVILDHLLHRAKELFENP  269 (453)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSST
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhcc
Confidence            999999999999999999999999999999998776544
>d2heka1 a.211.1.1 (A:1-369) Hypothetical protein aq_1910 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d3djba1 a.211.1.1 (A:2-214) Uncharacterized protein BT9727_1981 {Bacillus thuringiensis [TaxId: 1428]} Back     information, alignment and structure
>d3dtoa1 a.211.1.1 (A:2-213) Uncharacterized protein BH2835 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d3b57a1 a.211.1.1 (A:1-201) Uncharacterized protein Lin1889 {Listeria innocua [TaxId: 1642]} Back     information, alignment and structure
>d2pq7a1 a.211.1.1 (A:1-217) Predicted hydrolase mes0020 {Uncultured thermotogales bacterium [TaxId: 221214]} Back     information, alignment and structure
>d2qgsa1 a.211.1.1 (A:1-216) Uncharacterized protein SE1688 {Staphylococcus epidermidis [TaxId: 1282]} Back     information, alignment and structure
>d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664 {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d3dy8a1 a.211.1.2 (A:182-505) High-affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A, PDE9A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1taza_ a.211.1.2 (A:) Catalytic domain of cyclic nucleotide phosphodiesterase 1b, PDE1B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y2ka1 a.211.1.2 (A:86-411) Catalytic domain of cyclic nucleotide phosphodiesterase pde4d {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tbfa_ a.211.1.2 (A:) cGMP-specific 3',5'-cyclic phosphodiesterase pde5a1-Ibmx {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1so2a_ a.211.1.2 (A:) cGMP-inhibited 3',5'-cyclic phosphodiesterase B, pde3b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6za1 a.211.1.5 (A:313-509) Exopolyphosphatase Ppx C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xx7a_ a.211.1.1 (A:) Oxetanocin-like protein PF0395 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1ynba1 a.211.1.1 (A:7-173) Hypothetical protein AF1432 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2paqa1 a.211.1.1 (A:2-187) 5'-nucleotidase YfbR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vqra_ a.211.1.3 (A:) Hypothetical protein Cj0248 {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure