Psyllid ID: psy13622

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
Protein Sequence
MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSNDTQEELNQQLHSSVRTSNLDTSLRLLSQGADPNYFYQ
Secondary Structure (PSIPRED)
ccccccccccEEccHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHcccccccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEcccEEEEEccccHHcccccHHHEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mssraadpkwgilnkgvlVCDACCSIHRSlgrhisqvkylepstwppsLLSMLMTLtnggapslwehslcesktkkkpvpsdplhptkAEFIKAKYEQLSFMIRSNDTQEELNQQLHSSVRTSNLDTSLRLlsqgadpnyfyq
Flexible Loop (DISEMBL)
mssraadpkwgilnkGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLCESKtkkkpvpsdplhpTKAEFIKAKYEQLSFMIRSNDTQEELNQQLHSSvrtsnldtslrllsqgadpnyfyq
Low Complexity Region (SEG)
MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSNDTQEELNQQLHSSVRTSNLDTSLRLLSQGADPNYFYQ
Disordered region (IsUnstruct)
********KWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHS***********************IKAKY**L********************************************
Disordered Region (DISOPRED)
MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSL*********************FIKAKYEQLSFM************QLHSSVRTSNLDTSLRLLSQGADPNYF**
Disordered Region (DISEMBL)
********KWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLC************PLHPTKAEFIKAKYEQLSFMIRSNDTQEELNQQLHSSVRTSNLDTSLRLLSQGADPNYFYQ
Disordered Region (DISPRO)
MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLCE************LHPTKAEFIKAKYEQLSFMIRSNDTQEELNQQLHSSVRTSNLDTSLRLLSQGADPNYF**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSNDTQEELNQQLHSSVRTSNLDTSLRLLSQGADPNYFYQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	143	2.2.26 [Sep-21-2011]
Q9JLQ2	708	ARF GTPase-activating pro	yes	N/A	0.951	0.192	0.534	2e-41
Q14161	759	ARF GTPase-activating pro	no	N/A	0.951	0.179	0.534	9e-41
Q68FF6	770	ARF GTPase-activating pro	no	N/A	0.965	0.179	0.540	2e-40
Q9Z272	770	ARF GTPase-activating pro	no	N/A	0.965	0.179	0.540	2e-40
Q9Y2X7	761	ARF GTPase-activating pro	no	N/A	0.965	0.181	0.540	2e-40
Q96P47	875	Arf-GAP with GTPase, ANK	no	N/A	0.895	0.146	0.378	8e-17
Q99490	1192	Arf-GAP with GTPase, ANK	no	N/A	0.867	0.104	0.369	2e-16
Q8VHH5	910	Arf-GAP with GTPase, ANK	no	N/A	0.895	0.140	0.371	3e-16
Q5VW22	663	Arf-GAP with GTPase, ANK	no	N/A	0.881	0.190	0.376	5e-16
Q9UPQ3	857	Arf-GAP with GTPase, ANK	no	N/A	0.881	0.147	0.361	1e-15

>sp|Q9JLQ2|GIT2_MOUSE ARF GTPase-activating protein GIT2 OS=Mus musculus GN=Git2 PE=1 SV=2

 Score =  167 bits (422), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 78/146 (53%), Positives = 106/146 (72%), Gaps = 10/146 (6%)

Query: 7   DPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWE 66
           DP W  +N+G  +CD CCS+HRSLGRHISQV++L+ + WPP+LL M+ TL N GA S+WE
Sbjct: 18  DPSWASVNRGTFICDECCSVHRSLGRHISQVRHLKHTAWPPTLLQMVETLYNNGANSIWE 77

Query: 67  HSLCESKT----KKKPVPSDPLHPTKAEFIKAKYEQLSFM----IRSND--TQEELNQQL 116
           HSL +  +    ++K  P D +HP KAEFI+AKY+ L+F+     R +D  T ++L++QL
Sbjct: 78  HSLLDPASIMSGRRKANPQDKVHPNKAEFIRAKYQMLAFVHRLPCREDDSVTAKDLSKQL 137

Query: 117 HSSVRTSNLDTSLRLLSQGADPNYFY 142
           HSSVRT NL+T LRLLS GA  N+F+
Sbjct: 138 HSSVRTGNLETCLRLLSLGAQANFFH 163

GTPase-activating protein for the ADP ribosylation factor family.
Mus musculus (taxid: 10090)

>sp|Q14161|GIT2_HUMAN ARF GTPase-activating protein GIT2 OS=Homo sapiens GN=GIT2 PE=1 SV=2

 Score =  165 bits (417), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 78/146 (53%), Positives = 106/146 (72%), Gaps = 10/146 (6%)

Query: 7   DPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWE 66
           DP W  +N+G  +CD CCS+HRSLGRHISQV++L+ + WPP+LL M+ TL N GA S+WE
Sbjct: 18  DPSWASVNRGTFLCDECCSVHRSLGRHISQVRHLKHTPWPPTLLQMVETLYNNGANSIWE 77

Query: 67  HSLCESKT----KKKPVPSDPLHPTKAEFIKAKYEQLSFM----IRSND--TQEELNQQL 116
           HSL +  +    ++K  P D +HP KAEFI+AKY+ L+F+     R +D  T ++L++QL
Sbjct: 78  HSLLDPASIMSGRRKANPQDKVHPNKAEFIRAKYQMLAFVHRLPCRDDDSVTAKDLSKQL 137

Query: 117 HSSVRTSNLDTSLRLLSQGADPNYFY 142
           HSSVRT NL+T LRLLS GA  N+F+
Sbjct: 138 HSSVRTGNLETCLRLLSLGAQANFFH 163

GTPase-activating protein for the ADP ribosylation factor family.

Homo sapiens (taxid: 9606)

>sp|Q68FF6|GIT1_MOUSE ARF GTPase-activating protein GIT1 OS=Mus musculus GN=Git1 PE=1 SV=1

 Score =  164 bits (414), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 80/148 (54%), Positives = 106/148 (71%), Gaps = 10/148 (6%)

Query: 5   AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
           A DP W  +++GVLVCD CCS+HRSLGRHIS VK+L  S WPP+LL M+ TL + GA S+
Sbjct: 16  APDPGWASISRGVLVCDECCSVHRSLGRHISIVKHLRHSAWPPTLLQMVHTLASNGANSI 75

Query: 65  WEHSLCE----SKTKKKPVPSDPLHPTKAEFIKAKYEQLSFM----IRSND--TQEELNQ 114
           WEHSL +       ++K  P D +HP K+EFI+AKY+ L+F+     R +D  T ++L++
Sbjct: 76  WEHSLLDPAQVQSGRRKANPQDKVHPIKSEFIRAKYQMLAFVHKLPCRDDDGVTAKDLSK 135

Query: 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142
           QLHSSVRT NL+T LRLLS GA  N+F+
Sbjct: 136 QLHSSVRTGNLETCLRLLSLGAQANFFH 163

GTPase-activating protein for the ADP ribosylation factor family. May serve as a scaffold to bring together molecules to form signaling modules controlling vesicle trafficking, adhesion and cytoskeletal organization. Increases the speed of cell migration, as well as the size and rate of formation of protrusions, possibly by targeting PAK1 to adhesions and the leading edge of lamellipodia. Sequesters inactive non-tyrosine-phosphorylated paxillin in cytoplasmic complexes.

Mus musculus (taxid: 10090)

>sp|Q9Z272|GIT1_RAT ARF GTPase-activating protein GIT1 OS=Rattus norvegicus GN=Git1 PE=1 SV=1

 Score =  164 bits (414), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 80/148 (54%), Positives = 106/148 (71%), Gaps = 10/148 (6%)

Query: 5   AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
           A DP W  +++GVLVCD CCS+HRSLGRHIS VK+L  S WPP+LL M+ TL + GA S+
Sbjct: 16  APDPGWASISRGVLVCDECCSVHRSLGRHISIVKHLRHSAWPPTLLQMVHTLASNGANSI 75

Query: 65  WEHSLCE----SKTKKKPVPSDPLHPTKAEFIKAKYEQLSFM----IRSND--TQEELNQ 114
           WEHSL +       ++K  P D +HP K+EFI+AKY+ L+F+     R +D  T ++L++
Sbjct: 76  WEHSLLDPAQVQSGRRKANPQDKVHPIKSEFIRAKYQMLAFVHKLPCRDDDGVTAKDLSK 135

Query: 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142
           QLHSSVRT NL+T LRLLS GA  N+F+
Sbjct: 136 QLHSSVRTGNLETCLRLLSLGAQANFFH 163

GTPase-activating protein for the ADP ribosylation factor family. May serve as a scaffold to bring together molecules to form signaling modules controlling vesicle trafficking, adhesion and cytoskeletal organization. Increases the speed of cell migration, as well as the size and rate of formation of protrusions, possibly by targeting PAK1 to adhesions and the leading edge of lamellipodia. Sequesters inactive non-tyrosine-phosphorylated paxillin in cytoplasmic complexes.

Rattus norvegicus (taxid: 10116)

>sp|Q9Y2X7|GIT1_HUMAN ARF GTPase-activating protein GIT1 OS=Homo sapiens GN=GIT1 PE=1 SV=2

 Score =  164 bits (414), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 80/148 (54%), Positives = 106/148 (71%), Gaps = 10/148 (6%)

Query: 5   AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
           A DP W  +++GVLVCD CCS+HRSLGRHIS VK+L  S WPP+LL M+ TL + GA S+
Sbjct: 16  APDPGWASISRGVLVCDECCSVHRSLGRHISIVKHLRHSAWPPTLLQMVHTLASNGANSI 75

Query: 65  WEHSLCE----SKTKKKPVPSDPLHPTKAEFIKAKYEQLSFM----IRSND--TQEELNQ 114
           WEHSL +       ++K  P D +HP K+EFI+AKY+ L+F+     R +D  T ++L++
Sbjct: 76  WEHSLLDPAQVQSGRRKANPQDKVHPIKSEFIRAKYQMLAFVHKLPCRDDDGVTAKDLSK 135

Query: 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142
           QLHSSVRT NL+T LRLLS GA  N+F+
Sbjct: 136 QLHSSVRTGNLETCLRLLSLGAQANFFH 163

GTPase-activating protein for the ADP ribosylation factor family. May serve as a scaffold to bring together molecules to form signaling modules controlling vesicle trafficking, adhesion and cytoskeletal organization. Increases the speed of cell migration, as well as the size and rate of formation of protrusions, possibly by targeting PAK1 to adhesions and the leading edge of lamellipodia. Sequesters inactive non-tyrosine-phosphorylated paxillin in cytoplasmic complexes.

Homo sapiens (taxid: 9606)

>sp|Q96P47|AGAP3_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 OS=Homo sapiens GN=AGAP3 PE=1 SV=2

 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 71/132 (53%), Gaps = 4/132 (3%)

Query: 5   AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
           A +P W  LN G L+C  C  IHR LG H+S+V+ L+   WPP LL+++  + N  A S+
Sbjct: 646 APNPDWASLNLGALMCIECSGIHRHLGAHLSRVRSLDLDDWPPELLAVMTAMGNALANSV 705

Query: 65  WEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSNDTQEELNQQLHSSVRTSN 124
           WE +L       KP P D     K  +I+AKYEQ  F+     +   L QQL  +V   +
Sbjct: 706 WEGAL---GGYSKPGP-DACREEKERWIRAKYEQKLFLAPLPSSDVPLGQQLLRAVVEDD 761

Query: 125 LDTSLRLLSQGA 136
           L   + LL+ G+
Sbjct: 762 LRLLVMLLAHGS 773

GTPase-activating protein for the ADP ribosylation factor family (Potential). GTPase which may be involved in the degradation of expanded polyglutamine proteins through the ubiquitin-proteasome pathway.

Homo sapiens (taxid: 9606)

>sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2

 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 74/130 (56%), Gaps = 6/130 (4%)

Query: 5    AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
            A +P W  LN G L+C  C  IHR+LG H+S+V+ L+   WP  L  +L  + N  A  +
Sbjct: 951  APNPTWASLNLGALICIECSGIHRNLGTHLSRVRSLDLDDWPRELTLVLTAIGNDTANRV 1010

Query: 65   WEHSLCESKTKKKPVPS-DPLHPTKAEFIKAKYEQLSFMIRSNDTQEELNQQLHSSVRTS 123
            W     ES T+ +  PS D     +  +I+AKYEQL F+   + ++E L +QL ++V+  
Sbjct: 1011 W-----ESDTRGRAKPSRDSSREERESWIRAKYEQLLFLAPLSTSEEPLGRQLWAAVQAQ 1065

Query: 124  NLDTSLRLLS 133
            ++ T L LL+
Sbjct: 1066 DVATVLLLLA 1075

GTPase-activating protein (GAP) for ARF1 and ARF5, which also shows strong GTPase activity. Isoform 1 participates in the prevention of neuronal apoptosis by enhancing PI3 kinase activity. It aids the coupling of metabotropic glutamate receptor 1 (GRM1) to cytoplasmic PI3 kinase by interacting with Homer scaffolding proteins, and also seems to mediate anti-apoptotic effects of NGF by activating nuclear PI3 kinase. Isoform 2 does not stimulate PI3 kinase but may protect cells from apoptosis by stimulating Akt. It also regulates the adapter protein 1 (AP-1)-dependent trafficking of proteins in the endosomal system. It seems to be oncogenic. It is overexpressed in cancer cells, prevents apoptosis and promotes cancer cell invasion.

Homo sapiens (taxid: 9606)

>sp|Q8VHH5|AGAP3_MOUSE Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 OS=Mus musculus GN=Agap3 PE=1 SV=1

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 71/132 (53%), Gaps = 4/132 (3%)

Query: 5   AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
           A +P W  LN G L+C  C  IHR LG H+S+V+ L+   WPP LL+++  + N  A S+
Sbjct: 681 APNPDWASLNLGALMCIECSGIHRHLGAHLSRVRSLDLDDWPPELLAVMTAMGNALANSV 740

Query: 65  WEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSNDTQEELNQQLHSSVRTSN 124
           WE +L       KP P +     K  +I+AKYEQ  F+     +   L QQL  +V   +
Sbjct: 741 WEGAL---DGYSKPGP-EACREEKERWIRAKYEQKLFLAPLPSSDVPLGQQLLRAVVEDD 796

Query: 125 LDTSLRLLSQGA 136
           L   + LL+ G+
Sbjct: 797 LRLLVMLLAHGS 808

GTPase-activating protein for the ADP ribosylation factor family (Potential). GTPase which may be involved in the degradation of expanded polyglutamine proteins through the ubiquitin-proteasome pathway.

Mus musculus (taxid: 10090)

>sp|Q5VW22|AGAP6_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 6 OS=Homo sapiens GN=AGAP6 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 73/130 (56%), Gaps = 4/130 (3%)

Query: 7   DPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWE 66
           +PKW  LN GVL+C  C  IHRSLG H+S+V+ LE   WP  L  ++ ++ N  A S+WE
Sbjct: 463 NPKWASLNLGVLMCIECSGIHRSLGPHLSRVRSLELDDWPVELRKVMSSIVNDLANSIWE 522

Query: 67  HSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSNDTQEELNQQLHSSVRTSNLD 126
            S   S+ + KP         K  +I++KYE+  F+     T+  L QQL  +    +L 
Sbjct: 523 GS---SQGQTKP-SEKSTREEKERWIRSKYEEKLFLAPLPCTELSLGQQLLRATADEDLQ 578

Query: 127 TSLRLLSQGA 136
           T++ LL+ G+
Sbjct: 579 TAILLLAHGS 588

Putative GTPase-activating protein.

Homo sapiens (taxid: 9606)

>sp|Q9UPQ3|AGAP1_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 OS=Homo sapiens GN=AGAP1 PE=1 SV=4

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 72/130 (55%), Gaps = 4/130 (3%)

Query: 7   DPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWE 66
           +P W  LN G L+C  C  IHR+LG H+S+V+ L+   WP  L+ ++ ++ N  A S+WE
Sbjct: 631 NPNWASLNLGALMCIECSGIHRNLGTHLSRVRSLDLDDWPVELIKVMSSIGNELANSVWE 690

Query: 67  HSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSNDTQEELNQQLHSSVRTSNLD 126
            S   S+ + KP   D     K  +I+AKYEQ  F+     T+  L Q L  +    +L 
Sbjct: 691 ES---SQGRTKP-SVDSTREEKERWIRAKYEQKLFLAPLPCTELSLGQHLLRATADEDLR 746

Query: 127 TSLRLLSQGA 136
           T++ LL+ G+
Sbjct: 747 TAILLLAHGS 756

GTPase-activating protein for ARF1 and, to a lesser extent, ARF5. Directly and specifically regulates the adapter protein 3 (AP-3)-dependent trafficking of proteins in the endosomal-lysosomal system.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
332029724	423	ARF GTPase-activating protein GIT2 [Acro	0.958	0.323	0.558	1e-42
405975437	660	ARF GTPase-activating protein GIT2 [Cras	0.965	0.209	0.561	1e-41
443701944	690	hypothetical protein CAPTEDRAFT_168917 [	0.958	0.198	0.547	4e-41
345479874	642	PREDICTED: ARF GTPase-activating protein	0.958	0.213	0.541	1e-40
307178093	675	ARF GTPase-activating protein GIT1 [Camp	0.972	0.205	0.544	1e-40
12060548	757	p95-APP2 [Gallus gallus]	0.965	0.182	0.540	3e-40
224071716	727	PREDICTED: ARF GTPase-activating protein	0.965	0.189	0.540	3e-40
126324801	842	PREDICTED: ARF GTPase-activating protein	0.972	0.165	0.536	3e-40
45383009	757	ARF GTPase-activating protein GIT2 [Gall	0.965	0.182	0.540	3e-40
224071718	757	PREDICTED: ARF GTPase-activating protein	0.965	0.182	0.540	4e-40

>gi|332029724|gb|EGI69603.1| ARF GTPase-activating protein GIT2 [Acromyrmex echinatior]

 Score =  177 bits (448), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 81/145 (55%), Positives = 110/145 (75%), Gaps = 8/145 (5%)

Query: 7   DPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWE 66
           +P W  +N+ +L+CD CC IHRSLGRH+S +K L  S W   LL+M+ TL++ GA S+WE
Sbjct: 20  EPGWASINRAILLCDDCCGIHRSLGRHVSHIKSLHKSVWNTYLLNMVHTLSDNGANSIWE 79

Query: 67  HSLCESK----TKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSND----TQEELNQQLHS 118
           HSL +       ++KP P DPLHP KA+FIKAK++ L+F++R +     T+EEL++QLHS
Sbjct: 80  HSLLDPSNSKINRRKPQPKDPLHPVKADFIKAKHQHLTFILRPSKEECCTEEELDRQLHS 139

Query: 119 SVRTSNLDTSLRLLSQGADPNYFYQ 143
           SVRTSNL+TSLRLL+QGA+PNYFY+
Sbjct: 140 SVRTSNLETSLRLLAQGANPNYFYK 164

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405975437|gb|EKC40002.1| ARF GTPase-activating protein GIT2 [Crassostrea gigas]

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 82/146 (56%), Positives = 106/146 (72%), Gaps = 8/146 (5%)

Query: 5   AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
           A DP W  +N+GVL+CD CCS+HRSLGRHISQVK L    W P+LL+M+  L N GA S+
Sbjct: 18  APDPTWASINRGVLICDECCSVHRSLGRHISQVKSLTKGQWSPTLLAMVQHLANHGANSI 77

Query: 65  WEHSLCE----SKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSNDTQ----EELNQQL 116
           WEHSL +       KKKP P D +HP K EFI++KY+ L F+ +  D +    ++L++QL
Sbjct: 78  WEHSLLDPSQSKHGKKKPSPRDQVHPVKTEFIRSKYQFLQFVNKQKDGELNSIDDLSKQL 137

Query: 117 HSSVRTSNLDTSLRLLSQGADPNYFY 142
           HSSVRT+NL+T LRLLS+GADPNYF+
Sbjct: 138 HSSVRTNNLETCLRLLSKGADPNYFH 163

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|443701944|gb|ELU00134.1| hypothetical protein CAPTEDRAFT_168917 [Capitella teleta]

 Score =  172 bits (436), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 80/146 (54%), Positives = 109/146 (74%), Gaps = 9/146 (6%)

Query: 6   ADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLW 65
           ADP W  +N+GVL+CD CCS+HRSLGRHISQ++ L+  +W  + L+M+  L + GA ++W
Sbjct: 5   ADPGWASVNRGVLICDECCSVHRSLGRHISQIRSLKKGSWNSNQLAMVHQLVSMGANNIW 64

Query: 66  EHSLCE----SKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSND-----TQEELNQQL 116
           EHSL +     + ++KP P D +HP KA+FI+AKY+ L+F+ +  D     T E+LN+QL
Sbjct: 65  EHSLLDPSQGKQGRRKPNPRDSVHPMKADFIRAKYQFLAFVNKQRDSEIHCTAEDLNKQL 124

Query: 117 HSSVRTSNLDTSLRLLSQGADPNYFY 142
           HSSVRTSNL+TSLRLLS GADPNYF+
Sbjct: 125 HSSVRTSNLETSLRLLSLGADPNYFH 150

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|345479874|ref|XP_001603961.2| PREDICTED: ARF GTPase-activating protein GIT2-like [Nasonia vitripennis]

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/146 (54%), Positives = 109/146 (74%), Gaps = 9/146 (6%)

Query: 7   DPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWE 66
           +P W  +N+ +L+CD CCSIH SLGRH+S +K L    W  +LL+M+ TL + GA S+WE
Sbjct: 20  EPAWASVNRAILLCDECCSIHLSLGRHVSYIKSLTKGVWSTNLLNMVRTLNDNGANSIWE 79

Query: 67  HSLCESK----TKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSND-----TQEELNQQLH 117
           HSL +      +++KP P DPLHP KA+FIKAK++ L F++RS+      ++EEL++QLH
Sbjct: 80  HSLLDPSNSKFSRRKPQPKDPLHPVKADFIKAKHQDLKFVLRSSTKDEPCSEEELSRQLH 139

Query: 118 SSVRTSNLDTSLRLLSQGADPNYFYQ 143
           SSVRT NL+TSLRLL+QGA+PNYFY+
Sbjct: 140 SSVRTGNLETSLRLLAQGANPNYFYK 165

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307178093|gb|EFN66920.1| ARF GTPase-activating protein GIT1 [Camponotus floridanus]

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 80/147 (54%), Positives = 109/147 (74%), Gaps = 8/147 (5%)

Query: 5   AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
           A +P W  +N+ +L+CD CC IHRSLGRH+S +K L  S W   LL+M+ TL + GA S+
Sbjct: 18  ALEPGWASINRAILLCDDCCGIHRSLGRHVSHIKSLHKSAWNTHLLNMVHTLNDNGANSI 77

Query: 65  WEHSLCESK----TKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSND----TQEELNQQL 116
           WEHSL +      +++KP   D LHP KA+FIKAK++ L+F++R +     T+EEL++QL
Sbjct: 78  WEHSLLDPSSLKISRRKPQAKDSLHPVKADFIKAKHQLLAFILRPSKEECCTEEELSRQL 137

Query: 117 HSSVRTSNLDTSLRLLSQGADPNYFYQ 143
           HSSVRTSNL+TSLRLL+QGA+PNYFY+
Sbjct: 138 HSSVRTSNLETSLRLLAQGANPNYFYK 164

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|12060548|gb|AAG48161.1|AF134571_1 p95-APP2 [Gallus gallus]

 Score =  169 bits (428), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 80/148 (54%), Positives = 109/148 (73%), Gaps = 10/148 (6%)

Query: 5   AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
           A DP W  +N+G+L+CD CCS+HRSLGRHISQV++L+ + WPP+LL M+ TL N GA S+
Sbjct: 16  AQDPCWASINRGILICDECCSVHRSLGRHISQVRHLKHTPWPPTLLQMVETLYNNGANSI 75

Query: 65  WEHSLCESKT----KKKPVPSDPLHPTKAEFIKAKYEQLSFM----IRSND--TQEELNQ 114
           WEHSL +  +    ++K  P D +HP KAEFI+AKY+ L+F+     R +D  T ++L++
Sbjct: 76  WEHSLLDPASVMSGRRKANPQDKVHPNKAEFIRAKYQMLAFVHRLPCREDDSVTAKDLSK 135

Query: 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142
           QLHSSVRT NL+T LRLLS GA  N+F+
Sbjct: 136 QLHSSVRTGNLETCLRLLSLGAQANFFH 163

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|224071716|ref|XP_002197432.1| PREDICTED: ARF GTPase-activating protein GIT2 isoform 2 [Taeniopygia guttata]

 Score =  169 bits (428), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 80/148 (54%), Positives = 109/148 (73%), Gaps = 10/148 (6%)

Query: 5   AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
           A DP W  +N+G+L+CD CCS+HRSLGRHISQV++L+ + WPP+LL M+ TL N GA S+
Sbjct: 16  AQDPCWASINRGILICDECCSVHRSLGRHISQVRHLKHTPWPPTLLQMVETLYNNGANSI 75

Query: 65  WEHSLCESKT----KKKPVPSDPLHPTKAEFIKAKYEQLSFM----IRSND--TQEELNQ 114
           WEHSL +  +    ++K  P D +HP KAEFI+AKY+ L+F+     R +D  T ++L++
Sbjct: 76  WEHSLLDPASVMSGRRKASPQDKVHPNKAEFIRAKYQMLAFVHRLPCREDDSVTAKDLSK 135

Query: 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142
           QLHSSVRT NL+T LRLLS GA  N+F+
Sbjct: 136 QLHSSVRTGNLETCLRLLSLGAQANFFH 163

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|126324801|ref|XP_001378293.1| PREDICTED: ARF GTPase-activating protein GIT2-like [Monodelphis domestica]

 Score =  169 bits (428), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 80/149 (53%), Positives = 109/149 (73%), Gaps = 10/149 (6%)

Query: 4   RAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPS 63
           R  DP W  +N+G+L+CD CCS+HRSLGRHISQV++L+ + WPP+LL M+ TL N GA S
Sbjct: 98  RRLDPSWASVNRGILICDECCSVHRSLGRHISQVRHLKHTPWPPTLLQMVETLYNNGANS 157

Query: 64  LWEHSLCESKT----KKKPVPSDPLHPTKAEFIKAKYEQLSFM----IRSND--TQEELN 113
           +WEHSL +  +    ++K  P D +HP KAEFI+AKY+ L+F+     R +D  T ++L+
Sbjct: 158 IWEHSLLDPASIMSGRRKANPQDKVHPNKAEFIRAKYQMLAFVHRLPCRDDDSVTAKDLS 217

Query: 114 QQLHSSVRTSNLDTSLRLLSQGADPNYFY 142
           +QLHSSVRT NL+T LRLLS GA  N+F+
Sbjct: 218 KQLHSSVRTGNLETCLRLLSLGAQANFFH 246

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|45383009|ref|NP_989537.1| ARF GTPase-activating protein GIT2 [Gallus gallus] gi|5052309|gb|AAD38496.1|AF112366_1 p95 paxillin-kinase linker [Gallus gallus]

 Score =  169 bits (428), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 80/148 (54%), Positives = 109/148 (73%), Gaps = 10/148 (6%)

Query: 5   AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
           A DP W  +N+G+L+CD CCS+HRSLGRHISQV++L+ + WPP+LL M+ TL N GA S+
Sbjct: 16  AQDPCWASINRGILICDECCSVHRSLGRHISQVRHLKHTPWPPTLLQMVETLYNNGANSI 75

Query: 65  WEHSLCESKT----KKKPVPSDPLHPTKAEFIKAKYEQLSFM----IRSND--TQEELNQ 114
           WEHSL +  +    ++K  P D +HP KAEFI+AKY+ L+F+     R +D  T ++L++
Sbjct: 76  WEHSLLDPASVMSGRRKANPQDKVHPNKAEFIRAKYQMLAFVHRLPCREDDSVTAKDLSK 135

Query: 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142
           QLHSSVRT NL+T LRLLS GA  N+F+
Sbjct: 136 QLHSSVRTGNLETCLRLLSLGAQANFFH 163

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|224071718|ref|XP_002197421.1| PREDICTED: ARF GTPase-activating protein GIT2 isoform 1 [Taeniopygia guttata]

 Score =  169 bits (428), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 80/148 (54%), Positives = 109/148 (73%), Gaps = 10/148 (6%)

Query: 5   AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
           A DP W  +N+G+L+CD CCS+HRSLGRHISQV++L+ + WPP+LL M+ TL N GA S+
Sbjct: 16  AQDPCWASINRGILICDECCSVHRSLGRHISQVRHLKHTPWPPTLLQMVETLYNNGANSI 75

Query: 65  WEHSLCESKT----KKKPVPSDPLHPTKAEFIKAKYEQLSFM----IRSND--TQEELNQ 114
           WEHSL +  +    ++K  P D +HP KAEFI+AKY+ L+F+     R +D  T ++L++
Sbjct: 76  WEHSLLDPASVMSGRRKASPQDKVHPNKAEFIRAKYQMLAFVHRLPCREDDSVTAKDLSK 135

Query: 115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142
           QLHSSVRT NL+T LRLLS GA  N+F+
Sbjct: 136 QLHSSVRTGNLETCLRLLSLGAQANFFH 163

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
UNIPROTKB|E1BWS0	730	GIT2 "Uncharacterized protein"	0.965	0.189	0.540	1.1e-38
UNIPROTKB|F1NLN1	757	GIT2 "Uncharacterized protein"	0.965	0.182	0.540	1.3e-38
UNIPROTKB|F8W822	421	GIT2 "ARF GTPase-activating pr	0.951	0.323	0.534	2.6e-38
UNIPROTKB|F1RIT6	729	GIT2 "Uncharacterized protein"	0.951	0.186	0.541	3.9e-38
UNIPROTKB|I3LIY8	742	GIT2 "Uncharacterized protein"	0.951	0.183	0.541	4.2e-38
MGI|MGI:1347053	708	Git2 "G protein-coupled recept	0.951	0.192	0.534	5.6e-38
UNIPROTKB|F8W7V0	649	GIT2 "ARF GTPase-activating pr	0.951	0.209	0.534	7.4e-38
UNIPROTKB|D4A6B5	683	Git2 "Protein Git2" [Rattus no	0.951	0.199	0.534	7.7e-38
UNIPROTKB|E1BI41	759	GIT2 "Uncharacterized protein"	0.951	0.179	0.534	9.7e-38
UNIPROTKB|E2R8Q3	759	GIT2 "Uncharacterized protein"	0.951	0.179	0.534	9.7e-38

UNIPROTKB|E1BWS0 GIT2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 420 (152.9 bits), Expect = 1.1e-38, P = 1.1e-38
 Identities = 80/148 (54%), Positives = 109/148 (73%)

Query:     5 AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
             A DP W  +N+G+L+CD CCS+HRSLGRHISQV++L+ + WPP+LL M+ TL N GA S+
Sbjct:    16 AQDPCWASINRGILICDECCSVHRSLGRHISQVRHLKHTPWPPTLLQMVETLYNNGANSI 75

Query:    65 WEHSLCESKT----KKKPVPSDPLHPTKAEFIKAKYEQLSFM----IRSND--TQEELNQ 114
             WEHSL +  +    ++K  P D +HP KAEFI+AKY+ L+F+     R +D  T ++L++
Sbjct:    76 WEHSLLDPASVMSGRRKANPQDKVHPNKAEFIRAKYQMLAFVHRLPCREDDSVTAKDLSK 135

Query:   115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142
             QLHSSVRT NL+T LRLLS GA  N+F+
Sbjct:   136 QLHSSVRTGNLETCLRLLSLGAQANFFH 163

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

UNIPROTKB|F1NLN1 GIT2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 420 (152.9 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 80/148 (54%), Positives = 109/148 (73%)

Query:     5 AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
             A DP W  +N+G+L+CD CCS+HRSLGRHISQV++L+ + WPP+LL M+ TL N GA S+
Sbjct:    16 AQDPCWASINRGILICDECCSVHRSLGRHISQVRHLKHTPWPPTLLQMVETLYNNGANSI 75

Query:    65 WEHSLCESKT----KKKPVPSDPLHPTKAEFIKAKYEQLSFM----IRSND--TQEELNQ 114
             WEHSL +  +    ++K  P D +HP KAEFI+AKY+ L+F+     R +D  T ++L++
Sbjct:    76 WEHSLLDPASVMSGRRKANPQDKVHPNKAEFIRAKYQMLAFVHRLPCREDDSVTAKDLSK 135

Query:   115 QLHSSVRTSNLDTSLRLLSQGADPNYFY 142
             QLHSSVRT NL+T LRLLS GA  N+F+
Sbjct:   136 QLHSSVRTGNLETCLRLLSLGAQANFFH 163

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

UNIPROTKB|F8W822 GIT2 "ARF GTPase-activating protein GIT2" [Homo sapiens (taxid:9606)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 78/146 (53%), Positives = 106/146 (72%)

Query:     7 DPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWE 66
             DP W  +N+G  +CD CCS+HRSLGRHISQV++L+ + WPP+LL M+ TL N GA S+WE
Sbjct:    18 DPSWASVNRGTFLCDECCSVHRSLGRHISQVRHLKHTPWPPTLLQMVETLYNNGANSIWE 77

Query:    67 HSLCESKT----KKKPVPSDPLHPTKAEFIKAKYEQLSFM----IRSND--TQEELNQQL 116
             HSL +  +    ++K  P D +HP KAEFI+AKY+ L+F+     R +D  T ++L++QL
Sbjct:    78 HSLLDPASIMSGRRKANPQDKVHPNKAEFIRAKYQMLAFVHRLPCRDDDSVTAKDLSKQL 137

Query:   117 HSSVRTSNLDTSLRLLSQGADPNYFY 142
             HSSVRT NL+T LRLLS GA  N+F+
Sbjct:   138 HSSVRTGNLETCLRLLSLGAQANFFH 163

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

UNIPROTKB|F1RIT6 GIT2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 415 (151.1 bits), Expect = 3.9e-38, P = 3.9e-38
 Identities = 79/146 (54%), Positives = 106/146 (72%)

Query:     7 DPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWE 66
             DP W  +N+G  +CD CCS+HRSLGRHISQV++L+ + WPP+LL M+ TL N GA S+WE
Sbjct:    18 DPSWASVNRGTFICDECCSVHRSLGRHISQVRHLKHTPWPPTLLQMVETLYNNGANSIWE 77

Query:    67 HSLCESKT----KKKPVPSDPLHPTKAEFIKAKYEQLSFM----IRSND--TQEELNQQL 116
             HSL +  +    ++K  P D +HP KAEFIKAKY+ L+F+     R +D  T ++L++QL
Sbjct:    78 HSLLDPASILSGRRKANPQDKVHPNKAEFIKAKYQMLAFVHRLPCRDDDSVTAKDLSKQL 137

Query:   117 HSSVRTSNLDTSLRLLSQGADPNYFY 142
             HSSVRT NL+T LRLLS GA  N+F+
Sbjct:   138 HSSVRTGNLETCLRLLSLGAQANFFH 163

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

UNIPROTKB|I3LIY8 GIT2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 415 (151.1 bits), Expect = 4.2e-38, P = 4.2e-38
 Identities = 79/146 (54%), Positives = 106/146 (72%)

Query:     7 DPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWE 66
             DP W  +N+G  +CD CCS+HRSLGRHISQV++L+ + WPP+LL M+ TL N GA S+WE
Sbjct:     1 DPSWASVNRGTFICDECCSVHRSLGRHISQVRHLKHTPWPPTLLQMVETLYNNGANSIWE 60

Query:    67 HSLCESKT----KKKPVPSDPLHPTKAEFIKAKYEQLSFM----IRSND--TQEELNQQL 116
             HSL +  +    ++K  P D +HP KAEFIKAKY+ L+F+     R +D  T ++L++QL
Sbjct:    61 HSLLDPASILSGRRKANPQDKVHPNKAEFIKAKYQMLAFVHRLPCRDDDSVTAKDLSKQL 120

Query:   117 HSSVRTSNLDTSLRLLSQGADPNYFY 142
             HSSVRT NL+T LRLLS GA  N+F+
Sbjct:   121 HSSVRTGNLETCLRLLSLGAQANFFH 146

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

MGI|MGI:1347053 Git2 "G protein-coupled receptor kinase-interactor 2" [Mus musculus (taxid:10090)]

 Score = 413 (150.4 bits), Expect = 5.6e-38, P = 5.6e-38
 Identities = 78/146 (53%), Positives = 106/146 (72%)

Query:     7 DPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWE 66
             DP W  +N+G  +CD CCS+HRSLGRHISQV++L+ + WPP+LL M+ TL N GA S+WE
Sbjct:    18 DPSWASVNRGTFICDECCSVHRSLGRHISQVRHLKHTAWPPTLLQMVETLYNNGANSIWE 77

Query:    67 HSLCESKT----KKKPVPSDPLHPTKAEFIKAKYEQLSFM----IRSND--TQEELNQQL 116
             HSL +  +    ++K  P D +HP KAEFI+AKY+ L+F+     R +D  T ++L++QL
Sbjct:    78 HSLLDPASIMSGRRKANPQDKVHPNKAEFIRAKYQMLAFVHRLPCREDDSVTAKDLSKQL 137

Query:   117 HSSVRTSNLDTSLRLLSQGADPNYFY 142
             HSSVRT NL+T LRLLS GA  N+F+
Sbjct:   138 HSSVRTGNLETCLRLLSLGAQANFFH 163

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005654 "nucleoplasm" evidence=ISO

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F8W7V0 GIT2 "ARF GTPase-activating protein GIT2" [Homo sapiens (taxid:9606)]

 Score = 410 (149.4 bits), Expect = 7.4e-38, P = 7.4e-38
 Identities = 78/146 (53%), Positives = 106/146 (72%)

Query:     7 DPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWE 66
             DP W  +N+G  +CD CCS+HRSLGRHISQV++L+ + WPP+LL M+ TL N GA S+WE
Sbjct:    18 DPSWASVNRGTFLCDECCSVHRSLGRHISQVRHLKHTPWPPTLLQMVETLYNNGANSIWE 77

Query:    67 HSLCESKT----KKKPVPSDPLHPTKAEFIKAKYEQLSFM----IRSND--TQEELNQQL 116
             HSL +  +    ++K  P D +HP KAEFI+AKY+ L+F+     R +D  T ++L++QL
Sbjct:    78 HSLLDPASIMSGRRKANPQDKVHPNKAEFIRAKYQMLAFVHRLPCRDDDSVTAKDLSKQL 137

Query:   117 HSSVRTSNLDTSLRLLSQGADPNYFY 142
             HSSVRT NL+T LRLLS GA  N+F+
Sbjct:   138 HSSVRTGNLETCLRLLSLGAQANFFH 163

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

UNIPROTKB|D4A6B5 Git2 "Protein Git2" [Rattus norvegicus (taxid:10116)]

 Score = 411 (149.7 bits), Expect = 7.7e-38, P = 7.7e-38
 Identities = 78/146 (53%), Positives = 107/146 (73%)

Query:     7 DPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWE 66
             DP W  +N+G L+CD CCS+HRSLGRHISQV++L+ + WPP+LL M+ TL + GA S+WE
Sbjct:    18 DPSWASVNRGTLICDECCSVHRSLGRHISQVRHLKHTPWPPTLLQMVETLYSNGANSIWE 77

Query:    67 HSLCESKT----KKKPVPSDPLHPTKAEFIKAKYEQLSFM----IRSND--TQEELNQQL 116
             HSL +  +    ++K  P D +HP KAEFI+AKY+ L+F+     R +D  T ++L++QL
Sbjct:    78 HSLLDPASVMSGRRKANPQDKVHPNKAEFIRAKYQMLAFVHRLPCRDDDSVTAKDLSKQL 137

Query:   117 HSSVRTSNLDTSLRLLSQGADPNYFY 142
             HSSVRT NL+T LRLLS GA  N+F+
Sbjct:   138 HSSVRTGNLETCLRLLSLGAQANFFH 163

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

UNIPROTKB|E1BI41 GIT2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 412 (150.1 bits), Expect = 9.7e-38, P = 9.7e-38
 Identities = 78/146 (53%), Positives = 106/146 (72%)

Query:     7 DPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWE 66
             DP W  +N+G  +CD CCS+HRSLGRHISQV++L+ + WPP+LL M+ TL N GA S+WE
Sbjct:    18 DPSWASVNRGTFICDECCSVHRSLGRHISQVRHLKHTPWPPTLLQMVETLYNNGANSIWE 77

Query:    67 HSLCESKT----KKKPVPSDPLHPTKAEFIKAKYEQLSFM----IRSND--TQEELNQQL 116
             HSL +  +    ++K  P D +HP KAEFI+AKY+ L+F+     R +D  T ++L++QL
Sbjct:    78 HSLLDPTSIMSGRRKANPQDKVHPNKAEFIRAKYQMLAFVHRLPCRDDDSVTAKDLSKQL 137

Query:   117 HSSVRTSNLDTSLRLLSQGADPNYFY 142
             HSSVRT NL+T LRLLS GA  N+F+
Sbjct:   138 HSSVRTGNLETCLRLLSLGAQANFFH 163

GO:0005654 "nucleoplasm" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

UNIPROTKB|E2R8Q3 GIT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 412 (150.1 bits), Expect = 9.7e-38, P = 9.7e-38
 Identities = 78/146 (53%), Positives = 106/146 (72%)

Query:     7 DPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWE 66
             DP W  +N+G  +CD CCS+HRSLGRHISQV++L+ + WPP+LL M+ TL N GA S+WE
Sbjct:    18 DPSWASVNRGTFICDECCSVHRSLGRHISQVRHLKHTPWPPTLLQMVETLYNNGANSIWE 77

Query:    67 HSLCESKT----KKKPVPSDPLHPTKAEFIKAKYEQLSFM----IRSND--TQEELNQQL 116
             HSL +  +    ++K  P D +HP KAEFI+AKY+ L+F+     R +D  T ++L++QL
Sbjct:    78 HSLLDPASIMSGRRKANPQDKVHPNKAEFIRAKYQMLAFVHRLPCRDDDSMTAKDLSKQL 137

Query:   117 HSSVRTSNLDTSLRLLSQGADPNYFY 142
             HSSVRT NL+T LRLLS GA  N+F+
Sbjct:   138 HSSVRTGNLETCLRLLSLGAQANFFH 163

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9JLQ2	GIT2_MOUSE	No assigned EC number	0.5342	0.9510	0.1920	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	143
smart00105	119	smart00105, ArfGap, Putative GTP-ase activating pr	9e-25
pfam01412	117	pfam01412, ArfGap, Putative GTPase activating prot	1e-24
COG5347	319	COG5347, COG5347, GTPase-activating protein that r	9e-09
PLN03114	395	PLN03114, PLN03114, ADP-ribosylation factor GTPase	3e-06

>gnl|CDD|214518 smart00105, ArfGap, Putative GTP-ase activating proteins for the small GTPase, ARF

 Score = 91.2 bits (227), Expect = 9e-25
 Identities = 38/103 (36%), Positives = 50/103 (48%), Gaps = 3/103 (2%)

Query: 5   AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
           A +P W  +N GV +C  C  IHRSLG HIS+V+ L   TW    L +L    N  A S+
Sbjct: 18  APNPTWASVNLGVFLCIECSGIHRSLGVHISKVRSLTLDTWTEEELRLLQKGGNENANSI 77

Query: 65  WEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSND 107
           WE +L +   K      D        FI AKYE+  F+   + 
Sbjct: 78  WESNLDDFSLKPPD---DDDQQKYESFIAAKYEEKLFVPPESA 117

Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs. Length = 119

>gnl|CDD|216485 pfam01412, ArfGap, Putative GTPase activating protein for Arf

 Score = 90.8 bits (226), Expect = 1e-24
 Identities = 36/98 (36%), Positives = 47/98 (47%), Gaps = 4/98 (4%)

Query: 4   RAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPS 63
            A +P W  LN G+ +C  C  +HRSLG HIS+V+ L    W P  L  +    N  A  
Sbjct: 20  GAPNPTWASLNLGIFICIRCSGVHRSLGVHISKVRSLTLDKWTPEQLEFMKAGGNKRANE 79

Query: 64  LWEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSF 101
            WE +L       KP PS      +  FI+AKY +  F
Sbjct: 80  FWEANLP----PPKPPPSSSDREKRESFIRAKYVEKLF 113

Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs. Length = 117

>gnl|CDD|227651 COG5347, COG5347, GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]

 Score = 52.1 bits (125), Expect = 9e-09
 Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 4/128 (3%)

Query: 8   PKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEH 67
           P W  +N GV +C  C  +HRSLG HIS+VK L    W    L  +    N  A   +E 
Sbjct: 31  PTWASVNLGVFLCIDCAGVHRSLGVHISKVKSLTLDNWTEEELRRMEVGGNSNANRFYEK 90

Query: 68  SLCESKTKK-KPVPSDPLHPTKAEFIKAKYEQLSFMIRSNDTQEELNQQLHSSVRTSNLD 126
           +L +      K            ++I+ KYE   F+  S+   +  +    S+    ++D
Sbjct: 91  NLLDQLLLPIKAKYDS---SVAKKYIRKKYELKKFIDDSSSPSDFSSFSASSTRTVDSVD 147

Query: 127 TSLRLLSQ 134
             L   SQ
Sbjct: 148 DRLDSESQ 155

Length = 319

>gnl|CDD|178661 PLN03114, PLN03114, ADP-ribosylation factor GTPase-activating protein AGD10; Provisional

 Score = 44.8 bits (105), Expect = 3e-06
 Identities = 18/50 (36%), Positives = 28/50 (56%)

Query: 5  AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLM 54
          A +P W  +  G+ +C  C ++HRSLG HIS V+     +W    L M++
Sbjct: 30 AKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSSEQLKMMI 79

Length = 395

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	143
KOG0703|consensus	287		100.0
smart00105	112	ArfGap Putative GTP-ase activating proteins for th	100.0
PF01412	116	ArfGap: Putative GTPase activating protein for Arf	100.0
KOG0705|consensus	749		100.0
KOG0818|consensus	669		100.0
COG5347	319	GTPase-activating protein that regulates ARFs (ADP	100.0
PLN03131	705	hypothetical protein; Provisional	99.97
PLN03119	648	putative ADP-ribosylation factor GTPase-activating	99.97
KOG0704|consensus	386		99.95
PLN03114	395	ADP-ribosylation factor GTPase-activating protein	99.95
KOG0706|consensus	454		99.94
KOG0521|consensus	785		99.94
KOG1117|consensus	1186		99.93
KOG0702|consensus	524		99.11
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	94.89
KOG0521|consensus	785		94.33
PF13606	30	Ank_3: Ankyrin repeat	94.23
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	90.88
KOG0514|consensus	452		88.87
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	86.51
KOG0511|consensus	516		86.09

>KOG0703|consensus

Probab=100.00  E-value=1.8e-41  Score=273.74  Aligned_cols=99  Identities=33%  Similarity=0.643  Sum_probs=92.8

Q ss_pred             CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHHhccccccccCCCCCCC
Q psy13622          1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLCESKTKKKPVP   80 (143)
Q Consensus         1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~~ea~~~~~~~~~kP~~   80 (143)
                      .|||+++|+|||+|||||||++|+||||+||+||||||||+||.|++++|+.|+.+||.+||++||+.+|+  ...+|.+
T Consensus        29 ADC~a~~P~WaSwnlGvFiC~~C~giHR~lg~hiSkVkSv~LD~W~~eqv~~m~~~GN~~an~~~ea~~p~--~~~~p~~  106 (287)
T KOG0703|consen   29 ADCGAKGPRWASWNLGVFICLRCAGIHRSLGVHISKVKSVTLDEWTDEQVDFMISMGNAKANSYYEAKLPD--PFRRPGP  106 (287)
T ss_pred             cccCCCCCCeEEeecCeEEEeecccccccccchhheeeeeeccccCHHHHHHHHHHcchhhhhhccccCCc--cccCCCh
Confidence            49999999999999999999999999999999999999999999999999999999999999999999975  4578776


Q ss_pred             CCCChHHHHHHHHHHHhcCccccCC
Q psy13622         81 SDPLHPTKAEFIKAKYEQLSFMIRS  105 (143)
Q Consensus        81 ~~~~~~~r~~fI~~KY~~k~f~~~~  105 (143)
                      +    ..++.|||+||+.|+|+.+.
T Consensus       107 d----~~~e~FIR~KYE~kkf~~~~  127 (287)
T KOG0703|consen  107 D----DLVEQFIRDKYERKKFLDPE  127 (287)
T ss_pred             H----HHHHHHHHHHHhhhhhccch
Confidence            5    48999999999999999873

>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF

Probab=100.00  E-value=8.4e-41  Score=238.76  Aligned_cols=103  Identities=38%  Similarity=0.646  Sum_probs=92.6

Q ss_pred             CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHHhccccccccCCCCCCC
Q psy13622          1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLCESKTKKKPVP   80 (143)
Q Consensus         1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~~ea~~~~~~~~~kP~~   80 (143)
                      +|||+++|+|||+|+|||||+.|||+||+||+|||+||||+||+|++++|++|+.+||+++|++||++++++.  .+| |
T Consensus         7 aDC~~~~p~w~s~~~GifvC~~CsgiHR~lg~his~VkSl~md~w~~~~i~~~~~~GN~~~n~~~e~~~~~~~--~~~-~   83 (112)
T smart00105        7 FDCGAPNPTWASVNLGVFLCIECSGIHRSLGVHISKVRSLTLDTWTEEELRLLQKGGNENANSIWESNLDDFS--LKP-P   83 (112)
T ss_pred             cCCCCCCCCcEEeccceeEhHHhHHHHHhcCCCcCeeeecccCCCCHHHHHHHHHhhhHHHHHHHHhhCCccc--cCC-C
Confidence            6999999999999999999999999999999999999999999999999999999999999999999997432  233 3


Q ss_pred             CCCChHHHHHHHHHHHhcCccccCCC
Q psy13622         81 SDPLHPTKAEFIKAKYEQLSFMIRSN  106 (143)
Q Consensus        81 ~~~~~~~r~~fI~~KY~~k~f~~~~~  106 (143)
                      .++..+.|++||++||++++|+.+..
T Consensus        84 ~~~~~~~~~~fI~~KY~~k~f~~~~~  109 (112)
T smart00105       84 DSDDQQKYESFIAAKYEEKLFVPPES  109 (112)
T ss_pred             CCchHHHHHHHHHHHHHhhhcccccc
Confidence            33334899999999999999998854

Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs.

>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins []

Probab=100.00  E-value=2.8e-40  Score=237.27  Aligned_cols=100  Identities=37%  Similarity=0.693  Sum_probs=80.8

Q ss_pred             CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHHhccccccccCCCCCCC
Q psy13622          1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLCESKTKKKPVP   80 (143)
Q Consensus         1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~~ea~~~~~~~~~kP~~   80 (143)
                      +|||+++|+|||+|||||||+.|||+||+||+|+|+|||++||+|++++|+.|+.+||..+|++||++.+   ...+|.+
T Consensus        17 aDCg~~~p~w~s~~~GiflC~~Cag~HR~lg~~is~VkSi~~d~w~~~ev~~~~~~GN~~~n~~~e~~~~---~~~~~~~   93 (116)
T PF01412_consen   17 ADCGAPNPTWASLNYGIFLCLECAGIHRSLGVHISRVKSITMDNWSPEEVQRMREGGNKRANSIWEANSP---PPKKPPP   93 (116)
T ss_dssp             TTT-SBS--EEETTTTEEE-HHHHHHHHHHTTTT--EEETTTS---HHHHHHHHHSHHHHHHHHHTTTST---TTTTHCT
T ss_pred             CCCCCCCCCEEEeecChhhhHHHHHHHHHhcccchhccccccCCCCHHHHHHHHHHChHHHHHHHHcCCC---CCCCCCC
Confidence            6999999999999999999999999999999999999999999999999999999999999999999942   2244554


Q ss_pred             CCCChHHHHHHHHHHHhcCccccC
Q psy13622         81 SDPLHPTKAEFIKAKYEQLSFMIR  104 (143)
Q Consensus        81 ~~~~~~~r~~fI~~KY~~k~f~~~  104 (143)
                      +++ .+.+++||++||++++|+.+
T Consensus        94 ~~~-~~~~~~fI~~KY~~k~f~~~  116 (116)
T PF01412_consen   94 SSD-QEKREQFIRAKYVEKAFISK  116 (116)
T ss_dssp             TSH-HHHHHHHHHHHHTTHTTS-C
T ss_pred             CCc-HHHHHHHHHHHHHhhhhccC
Confidence            444 48999999999999999863

The GTP-bound form of ARF is essential for the maintenance of normal Golgi morphology, it participates in recruitment of coat proteins which are required for budding and fission of membranes. Before the fusion with an acceptor compartment the membrane must be uncoated. This step required the hydrolysis of GTP associated to ARF. These proteins contain a characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) which displays some similarity to the C4-type GATA zinc finger. The ARFGAP domain display no obvious similarity to other GAP proteins. The 3D structure of the ARFGAP domain of the PYK2-associated protein beta has been solved []. It consists of a three-stranded beta-sheet surrounded by 5 alpha helices. The domain is organised around a central zinc atom which is coordinated by 4 cysteines. The ARFGAP domain is clearly unrelated to the other GAP proteins structures which are exclusively helical. Classical GAP proteins accelerate GTPase activity by supplying an arginine finger to the active site. The crystal structure of ARFGAP bound to ARF revealed that the ARFGAP domain does not supply an arginine to the active site which suggests a more indirect role of the ARFGAP domain in the GTPase hydrolysis []. The Rev protein of human immunodeficiency virus type 1 (HIV-1) facilitates nuclear export of unspliced and partly-spliced viral RNAs []. Rev contains an RNA-binding domain and an effector domain; the latter is believed to interact with a cellular cofactor required for the Rev response and hence HIV-1 replication. Human Rev interacting protein (hRIP) specifically interacts with the Rev effector. The amino acid sequence of hRIP is characterised by an N-terminal, C-4 class zinc finger motif.; GO: 0008060 ARF GTPase activator activity, 0008270 zinc ion binding, 0032312 regulation of ARF GTPase activity; PDB: 2P57_A 2CRR_A 2OWA_B 3O47_B 3DWD_A 1DCQ_A 2CRW_A 3MDB_D 3FEH_A 3LJU_X ....

>KOG0705|consensus

Probab=100.00  E-value=6.6e-38  Score=269.93  Aligned_cols=134  Identities=40%  Similarity=0.682  Sum_probs=127.6

Q ss_pred             CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHHhccccccccCCCCCCC
Q psy13622          1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLCESKTKKKPVP   80 (143)
Q Consensus         1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~~ea~~~~~~~~~kP~~   80 (143)
                      .|||+++|.|||+|+|+.+|++|+||||.||+|+|||||+.||.|+.+.+.+|..+||+.||++||...   .+..||.|
T Consensus       517 ~dc~~~n~~wAslnlg~l~cieCsgihr~lgt~lSrvr~LeLDdWPvEl~~Vm~aiGN~~AN~vWE~~~---~G~~KPs~  593 (749)
T KOG0705|consen  517 VDCGTPNPKWASLNLGVLMCIECSGIHRNLGTHLSRVRSLELDDWPVELLKVMSAIGNDLANSVWEGSS---QGQTKPSP  593 (749)
T ss_pred             eecCCCCcccccccCCeEEEEEchhhhhhhhhhhhhhhccccccCcHHHHHHHHHhhhhHHHHHhhhhc---cCCcCCCc
Confidence            499999999999999999999999999999999999999999999999999999999999999999865   57789999


Q ss_pred             CCCChHHHHHHHHHHHhcCccccCCCCCHHHHHHHHHHhhhcCCHHHHHHHHHcCCCC
Q psy13622         81 SDPLHPTKAEFIKAKYEQLSFMIRSNDTQEELNQQLHSSVRTSNLDTSLRLLSQGADP  138 (143)
Q Consensus        81 ~~~~~~~r~~fI~~KY~~k~f~~~~~~~~~~~~~~l~~av~~~~~~~~~~ll~~Ga~~  138 (143)
                      +++. +++|+||++||++|.|..|.+.+...+.++|+.||...|+.+++.|||+|...
T Consensus       594 ~s~R-EEkErwIr~KYeqklFLaPl~~te~~lgqqLl~A~~~~Dl~t~~lLLAhg~~~  650 (749)
T KOG0705|consen  594 DSSR-EEKERWIRAKYEQKLFLAPLPCTEEPLGQQLLRAVAAEDLQTAILLLAHGSRE  650 (749)
T ss_pred             cccH-HHHHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhccCch
Confidence            8765 99999999999999999999888999999999999999999999999999754

>KOG0818|consensus

Probab=100.00  E-value=4.4e-36  Score=255.46  Aligned_cols=141  Identities=55%  Similarity=0.990  Sum_probs=133.3

Q ss_pred             CCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHHhcccccccc----CCCC
Q psy13622          2 SSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLCESK----TKKK   77 (143)
Q Consensus         2 DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~~ea~~~~~~----~~~k   77 (143)
                      |||+++|.|||||-|+|+|.+|..+||+||.|||.||++....|.++.+++...+.|..+|.|||..+.+|.    +.+|
T Consensus        13 DC~~~dp~WASvnrGt~lC~eCcsvHrsLGrhIS~vrhLR~s~W~pt~l~~V~tLn~~gaNsIWEh~Lld~st~~sg~rk   92 (669)
T KOG0818|consen   13 DCSGPDPSWASVNRGTFLCDECCSVHRSLGRHISQVRHLRHTPWPPTLLQMVETLNNNGANSIWEHSLLDPATIMSGRRK   92 (669)
T ss_pred             ccCCCCCcceeecCceEehHhhhHHHhhhcchHHHHHHhccCCCCHHHHHHHHHHHhcCcchhhhhhccCchhhhcccCC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999884    4688


Q ss_pred             CCCCCCChHHHHHHHHHHHhcCccccCC----C--CCHHHHHHHHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622         78 PVPSDPLHPTKAEFIKAKYEQLSFMIRS----N--DTQEELNQQLHSSVRTSNLDTSLRLLSQGADPNYFY  142 (143)
Q Consensus        78 P~~~~~~~~~r~~fI~~KY~~k~f~~~~----~--~~~~~~~~~l~~av~~~~~~~~~~ll~~Ga~~n~~~  142 (143)
                      |.|.|..|..+++||++||+...|+.+.    .  -.+.++++||+.+|+++++++.++||++||++||++
T Consensus        93 ~~pqD~~Hp~K~eFIkaKy~~LtFv~~~~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~h  163 (669)
T KOG0818|consen   93 ANPQDKVHPNKAEFIRAKYQMLAFVHRLPCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFH  163 (669)
T ss_pred             CCCcCCCCccHHHHHHHHHHheeeeccCCCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCC
Confidence            9999999999999999999999999852    2  257789999999999999999999999999999986

>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.4e-35  Score=244.02  Aligned_cols=101  Identities=31%  Similarity=0.528  Sum_probs=89.9

Q ss_pred             CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHHhcccccccc-CCCCCC
Q psy13622          1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLCESK-TKKKPV   79 (143)
Q Consensus         1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~~ea~~~~~~-~~~kP~   79 (143)
                      ||||+++|+|||+|||||||++||||||+||+|||+||||+||+|++++|++|..+||.+||.|||.++-++. ...+..
T Consensus        24 aDCga~~P~W~S~nlGvfiCi~CagvHRsLGvhiS~VKSitLD~wt~~~l~~m~~gGN~~a~~~~e~~~~~~~~~~~k~~  103 (319)
T COG5347          24 ADCGAPNPTWASVNLGVFLCIDCAGVHRSLGVHISKVKSLTLDNWTEEELRRMEVGGNSNANRFYEKNLLDQLLLPIKAK  103 (319)
T ss_pred             ccCCCCCCceEecccCeEEEeecchhhhccccceeeeeeeecccCCHHHHHHHHHhcchhhhhHhccCCCcccccccccc
Confidence            7999999999999999999999999999999999999999999999999999999999999999999975421 112333


Q ss_pred             CCCCChHHHHHHHHHHHhcCccccC
Q psy13622         80 PSDPLHPTKAEFIKAKYEQLSFMIR  104 (143)
Q Consensus        80 ~~~~~~~~r~~fI~~KY~~k~f~~~  104 (143)
                      .+   ...+++||+.||++++|...
T Consensus       104 yd---~~v~~~y~~~ky~~~~~~~~  125 (319)
T COG5347         104 YD---SSVAKKYIRKKYELKKFIDD  125 (319)
T ss_pred             cC---HHHHHHHHHHHHHhhhcccc
Confidence            32   36899999999999999985

>PLN03131 hypothetical protein; Provisional

Probab=99.97  E-value=1.1e-32  Score=239.31  Aligned_cols=102  Identities=19%  Similarity=0.293  Sum_probs=88.8

Q ss_pred             CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHHhccccccccCCCCCCC
Q psy13622          1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLCESKTKKKPVP   80 (143)
Q Consensus         1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~~ea~~~~~~~~~kP~~   80 (143)
                      +|||+++|+|||+|||||||+.|+||||.||   +|||||+||+|++++|+.|+.+||+++|++||++|+.. .  ++.|
T Consensus        27 ADCga~~P~WASiNlGIFICi~CSGIHRsLg---hRVKSVTLD~WtdeEV~~Mk~gGN~~AN~iyeanwd~~-r--~~lP  100 (705)
T PLN03131         27 INCNSLGPQFVCTNFWTFICMTCSGIHREFT---HRVKSVSMSKFTSQDVEALQNGGNQRAREIYLKDWDQQ-R--QRLP  100 (705)
T ss_pred             ccCCCCCCCeeEeccceEEchhchhhhcccC---cccccccCCCCCHHHHHHHHHhccHHHHHHHHhhcccc-c--CCCC
Confidence            6999999999999999999999999999997   49999999999999999999999999999999999632 2  2333


Q ss_pred             CCCChHHHHHHHHHHHhcCccccCCCCC
Q psy13622         81 SDPLHPTKAEFIKAKYEQLSFMIRSNDT  108 (143)
Q Consensus        81 ~~~~~~~r~~fI~~KY~~k~f~~~~~~~  108 (143)
                      .....+.+++|||.||++|+|+.+...+
T Consensus       101 ~~sd~ekrr~FIR~KYVeKRFa~~~s~d  128 (705)
T PLN03131        101 DNSKVDKIREFIKDIYVDKKYAGGKTHD  128 (705)
T ss_pred             CCccHHHHHHHHHHHHhhhhhhcCCCCC
Confidence            3333367899999999999999985433

>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional

Probab=99.97  E-value=1.7e-32  Score=236.47  Aligned_cols=99  Identities=21%  Similarity=0.317  Sum_probs=87.7

Q ss_pred             CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHHhccccccccCCCCCCC
Q psy13622          1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLCESKTKKKPVP   80 (143)
Q Consensus         1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~~ea~~~~~~~~~kP~~   80 (143)
                      +|||+++|+|||+|||||||++|+||||.||   +|||||+||+|++++|++|+.+||+++|++||++|++. .  ++.|
T Consensus        27 ADCgs~~P~WASiNlGIFICi~CSGIHRsLG---hRVKSLSLDkWT~EEVe~Mk~gGN~~AN~iyeanw~~~-~--~~~P  100 (648)
T PLN03119         27 INCNSLGPQYVCTTFWTFVCMACSGIHREFT---HRVKSVSMSKFTSKEVEVLQNGGNQRAREIYLKNWDHQ-R--QRLP  100 (648)
T ss_pred             ccCCCCCCCceeeccceEEeccchhhhccCC---ceeeccccCCCCHHHHHHHHHhchHHHHHHHHhhcccc-c--CCCC
Confidence            6999999999999999999999999999998   59999999999999999999999999999999999743 2  2333


Q ss_pred             CCCChHHHHHHHHHHHhcCccccCC
Q psy13622         81 SDPLHPTKAEFIKAKYEQLSFMIRS  105 (143)
Q Consensus        81 ~~~~~~~r~~fI~~KY~~k~f~~~~  105 (143)
                      .....+.+++|||.||++|+|+.+.
T Consensus       101 ~~sD~e~lr~FIR~KYVeKRF~~~~  125 (648)
T PLN03119        101 ENSNAERVREFIKNVYVQKKYAGAN  125 (648)
T ss_pred             CCccHHHHHHHHHHHHhhhhccCcC
Confidence            3333467889999999999999874

>KOG0704|consensus

Probab=99.95  E-value=4.2e-29  Score=205.19  Aligned_cols=104  Identities=19%  Similarity=0.240  Sum_probs=83.2

Q ss_pred             CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHHhcccccc-ccCCCCCC
Q psy13622          1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLCE-SKTKKKPV   79 (143)
Q Consensus         1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~~ea~~~~-~~~~~kP~   79 (143)
                      |||++++|+|||++||||||.+|||+||.||+|||+|||||||+|.+.+|+.|+++||++++.|++..-.- +....+-.
T Consensus        23 feC~a~NPQWvSvsyGIfICLECSG~HRgLGVhiSFVRSVTMD~wkeiel~kMeaGGN~~~~eFL~s~~~~~e~~~i~eK  102 (386)
T KOG0704|consen   23 FECGAPNPQWVSVSYGIFICLECSGKHRGLGVHISFVRSVTMDKWKEIELKKMEAGGNERFREFLSSQGIYKETWPIREK  102 (386)
T ss_pred             eecCCCCCCeEeecccEEEEEecCCcccccceeeEEEEeeecccccHHHHHHHHhccchhHHHHHhhCccccccccHHHh
Confidence            79999999999999999999999999999999999999999999999999999999999999999866310 00011112


Q ss_pred             CCCCChHHHHHHHHHHHhcCccccC
Q psy13622         80 PSDPLHPTKAEFIKAKYEQLSFMIR  104 (143)
Q Consensus        80 ~~~~~~~~r~~fI~~KY~~k~f~~~  104 (143)
                      .++......++-|.+--+.+.|-++
T Consensus       103 Yns~aAa~yRdki~~laegr~w~d~  127 (386)
T KOG0704|consen  103 YNSRAAALYRDKIAALAEGREWNDP  127 (386)
T ss_pred             hccHHHHHHHHHHHHHhcCCccccc
Confidence            2222234566777777777888443

>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional

Probab=99.95  E-value=4.5e-28  Score=200.20  Aligned_cols=102  Identities=25%  Similarity=0.370  Sum_probs=83.3

Q ss_pred             CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHHhccccccccCCCCCCC
Q psy13622          1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLCESKTKKKPVP   80 (143)
Q Consensus         1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~~ea~~~~~~~~~kP~~   80 (143)
                      +|||+++|+|||+|+|||||+.|+|+||.||+|||+|||++||.|++++|++|+.+||.++|.||+.+.-......+-..
T Consensus        26 aDCga~nPtWASvn~GIFLCl~CSGVHRsLGvHISfVRSltLD~Ws~eqL~~Mk~GGN~rA~~fF~qhG~~~~~~~~~KY  105 (395)
T PLN03114         26 FDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSSEQLKMMIYGGNNRAQVFFKQYGWSDGGKTEAKY  105 (395)
T ss_pred             ccCCCCCCCceeeccceeehhhhhHhhccCCCCCceeecccCCCCCHHHHHHHHHhcCHHHHHHHHHcCCCCCCCccccc
Confidence            69999999999999999999999999999999999999999999999999999999999999999987542211112222


Q ss_pred             CCCChHHHHHHHHHHHhcCcccc
Q psy13622         81 SDPLHPTKAEFIKAKYEQLSFMI  103 (143)
Q Consensus        81 ~~~~~~~r~~fI~~KY~~k~f~~  103 (143)
                      ++.. ..+=+-+.+|++.+.+..
T Consensus       106 ~S~a-A~~Yre~L~keVa~~~a~  127 (395)
T PLN03114        106 TSRA-ADLYKQILAKEVAKSKAE  127 (395)
T ss_pred             CCHH-HHHHHHHHHHHHHHhhhc
Confidence            2222 334444788888888874

>KOG0706|consensus

Probab=99.94  E-value=4.5e-28  Score=204.09  Aligned_cols=70  Identities=27%  Similarity=0.586  Sum_probs=68.3

Q ss_pred             CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHHhccccc
Q psy13622          1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLC   70 (143)
Q Consensus         1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~~ea~~~   70 (143)
                      |||||++|+|+||+||||||++||++||.||+|||+|||+.||+|+..+|+.|+.+||.+|+.|+..+.-
T Consensus        27 FDCgAknPtWaSVTYGIFLCiDCSAvHRnLGVHiSFVRSTnLDsWs~~qLR~M~~GGN~nA~~FFkqhg~   96 (454)
T KOG0706|consen   27 FDCGAKNPTWASVTYGIFLCIDCSAVHRNLGVHISFVRSTNLDSWSWEQLRRMQVGGNANARVFFKQHGC   96 (454)
T ss_pred             cccCCCCCCceeecceEEEEEecchhhhccccceEEEeecccccCCHHHHhHhhhcCchhHHHHHHHcCC
Confidence            7999999999999999999999999999999999999999999999999999999999999999998863

>KOG0521|consensus

Probab=99.94  E-value=1.3e-27  Score=215.58  Aligned_cols=104  Identities=35%  Similarity=0.629  Sum_probs=96.7

Q ss_pred             CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHHhccccccccCCCCCCC
Q psy13622          1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLCESKTKKKPVP   80 (143)
Q Consensus         1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~~ea~~~~~~~~~kP~~   80 (143)
                      .|||++.|+|+|+|+||.+|++|+|+||+||+|+|||+|++||.|.++.+.+|+.+||..+|.+||+++++. ...+|.+
T Consensus       430 ~Dcg~p~ptw~S~NLgv~~CIecSGvhRslGvh~SkvrsLtLD~~~~~l~~l~~~lgn~~~N~i~e~~l~~~-~~~~~~~  508 (785)
T KOG0521|consen  430 CDCGAPEPTWASINLGVLLCIECSGVHRSLGVHISKVRSLTLDVWEPELLLLFKNLGNKYVNEIYEALLPSY-DSSKPTA  508 (785)
T ss_pred             hhcCCCCCchHhhhhchhhHhhccccccccCchhhhhhhhhhhccCcHHHHHHHHhCcchhhhhhhcccccc-cccCCCC
Confidence            389999999999999999999999999999999999999999999999999999999999999999999854 3678888


Q ss_pred             CCCChHHHHHHHHHHHhcCccccCCC
Q psy13622         81 SDPLHPTKAEFIKAKYEQLSFMIRSN  106 (143)
Q Consensus        81 ~~~~~~~r~~fI~~KY~~k~f~~~~~  106 (143)
                      ..+. ..|+.||++||++++|.....
T Consensus       509 ~~~~-~~r~~~i~~kyve~~F~~k~~  533 (785)
T KOG0521|consen  509 SSSR-QAREAWIKAKYVERRFSVKEP  533 (785)
T ss_pred             ccch-hhhhHhhhcccceeeEeeccc
Confidence            7764 899999999999999998743

>KOG1117|consensus

Probab=99.93  E-value=5.2e-27  Score=209.19  Aligned_cols=138  Identities=29%  Similarity=0.512  Sum_probs=124.5

Q ss_pred             CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCC--CCChHHHHHHHhhccCchhHHhccccccccCCCCC
Q psy13622          1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPS--TWPPSLLSMLMTLTNGGAPSLWEHSLCESKTKKKP   78 (143)
Q Consensus         1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld--~w~~~~v~~~~~~GN~~~n~~~ea~~~~~~~~~kP   78 (143)
                      .|||++.|.|||+||+|.||..|+|-||+||.-+|||+|++||  .|+.+.++++..+||.++|.||.+++++. ...  
T Consensus       302 adC~ssrPdwasiNL~vvIck~caGqhrslgs~dSkvrslkmd~svwsneliElfivlgn~~an~Fwa~nl~~~-e~l--  378 (1186)
T KOG1117|consen  302 ADCGSSRPDWASINLCVVICKPCAGQHRSLGSGDSKVRSLKMDPSVWSNELIELFIVLGNPRANRFWAGNLPPN-EHL--  378 (1186)
T ss_pred             cccCCCCCcccccccceEEcccCCCccccCCCccccccccccCcccccchhhhhheeecCcccccccccCCCCc-ccc--
Confidence            3899999999999999999999999999999999999999997  69999999999999999999999999843 323  


Q ss_pred             CCCCCChHHHHHHHHHHHhcCccccCC--CCCHHHHHHHHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622         79 VPSDPLHPTKAEFIKAKYEQLSFMIRS--NDTQEELNQQLHSSVRTSNLDTSLRLLSQGADPNYFY  142 (143)
Q Consensus        79 ~~~~~~~~~r~~fI~~KY~~k~f~~~~--~~~~~~~~~~l~~av~~~~~~~~~~ll~~Ga~~n~~~  142 (143)
                      .|+++. ..|++||++||.+..|....  ....+++.++|+.||...|+..++.+|.+|++++++.
T Consensus       379 h~dssp-~~r~~fi~~Kykeg~fRk~~~~~~~~sel~kalcaaV~~pdl~etma~l~sga~v~~f~  443 (1186)
T KOG1117|consen  379 HPDSSP-STRRQFIKEKYKEGKFRKEHPVEICSSELPKALCAAVNVPDLLETMALLFSGADVMCFT  443 (1186)
T ss_pred             CCCCCc-chhhhHHHHHhhccccccccccccccccCChhheeeeeCCchhhHHHHhhccccceeec
Confidence            344555 78999999999999998763  5567889999999999999999999999999999864

>KOG0702|consensus

Probab=99.11  E-value=6.3e-11  Score=101.80  Aligned_cols=100  Identities=18%  Similarity=0.372  Sum_probs=86.2

Q ss_pred             CCCCCCCC-CeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHHhccccccccCCCCCC
Q psy13622          1 MSSRAADP-KWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLCESKTKKKPV   79 (143)
Q Consensus         1 ~DCga~~P-~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~~ea~~~~~~~~~kP~   79 (143)
                      |+|....+ +|+...-|-|+|..|+|.-|.|. .-+||||++|.+++..++..++..||..+.++|..-. |.....-|.
T Consensus        29 ~nCnsl~~~t~~~~~~g~fv~~~~sg~ls~l~-~ahRvksiSmttft~qevs~lQshgNq~~k~i~fkl~-D~q~S~vPD  106 (524)
T KOG0702|consen   29 INCNSLVAATYVVYTVGSFVCTMCSGLLSGLN-PAHRVKSISMTTFTDQEVSFLQSHGNQVCKEIWFKLF-DFQRSNVPD  106 (524)
T ss_pred             eeccccccceEEEeeccceeeeccchhhccCC-CccccceeeeeeccccchHHHhhcchhhhhhhhhcch-hhhhccCCC
Confidence            68999988 99999999999999999999984 5689999999999999999999999999999998664 333334444


Q ss_pred             CCCCChHHHHHHHHHHHhcCccccC
Q psy13622         80 PSDPLHPTKAEFIKAKYEQLSFMIR  104 (143)
Q Consensus        80 ~~~~~~~~r~~fI~~KY~~k~f~~~  104 (143)
                      ..+.  ...++||+.||+.|+|+.+
T Consensus       107 ~rn~--~~~kef~q~~y~~kr~~v~  129 (524)
T KOG0702|consen  107 SRNP--QKVKEFQQEKYVKKRYYVP  129 (524)
T ss_pred             cccc--hhhHHHHhhhhccceeecC
Confidence            4433  5789999999999999987

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=94.89  E-value=0.053  Score=29.62  Aligned_cols=28  Identities=32%  Similarity=0.293  Sum_probs=26.1

Q ss_pred             HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622        115 QLHSSVRTSNLDTSLRLLSQGADPNYFY  142 (143)
Q Consensus       115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~  142 (143)
                      .|+.|+..++...+..||.+|+|+|..|
T Consensus         5 pLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    5 PLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             HHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            5889999999999999999999999876

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0521|consensus

Probab=94.33  E-value=0.0089  Score=55.29  Aligned_cols=61  Identities=15%  Similarity=0.021  Sum_probs=51.6

Q ss_pred             CCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHHhcccc
Q psy13622          7 DPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSL   69 (143)
Q Consensus         7 ~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~~ea~~   69 (143)
                      .-.|+++|+.+.+|+.|+++|+..+.+++..+++.+++-.+  +.....-|+..++..+....
T Consensus       641 ~~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~--vn~~d~~g~~plh~~~~~g~  701 (785)
T KOG0521|consen  641 LAHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGAD--VNALDSKGRTPLHHATASGH  701 (785)
T ss_pred             hcchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCc--chhhhccCCCcchhhhhhcc
Confidence            56899999999999999999999999999999999988877  77777777777776655443

>PF13606 Ank_3: Ankyrin repeat

Probab=94.23  E-value=0.075  Score=28.85  Aligned_cols=26  Identities=35%  Similarity=0.466  Sum_probs=23.9

Q ss_pred             HHHHhhhcCCHHHHHHHHHcCCCCCC
Q psy13622        115 QLHSSVRTSNLDTSLRLLSQGADPNY  140 (143)
Q Consensus       115 ~l~~av~~~~~~~~~~ll~~Ga~~n~  140 (143)
                      .|+.|++.++++.+-.||..|+|+|.
T Consensus         5 ~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    5 PLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            58899999999999999999999983

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=90.88  E-value=0.29  Score=29.35  Aligned_cols=28  Identities=39%  Similarity=0.425  Sum_probs=23.2

Q ss_pred             HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622        115 QLHSSVRTSNLDTSLRLLSQGADPNYFY  142 (143)
Q Consensus       115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~  142 (143)
                      .|+.|++.|+++.+..|+..|+|+|..|
T Consensus         4 ~lh~A~~~g~~~~~~~Ll~~~~din~~d   31 (54)
T PF13637_consen    4 PLHWAARSGNLEIVKLLLEHGADINAQD   31 (54)
T ss_dssp             HHHHHHHTT-HHHHHHHHHTTSGTT-B-
T ss_pred             HHHHHHHhCCHHHHHHHHHCCCCCCCCC
Confidence            5789999999999999999999999875

...

>KOG0514|consensus

Probab=88.87  E-value=0.41  Score=41.07  Aligned_cols=31  Identities=29%  Similarity=0.273  Sum_probs=28.5

Q ss_pred             HHHHHHhhhcCCHHHHHHHHHcCCCCCCcCC
Q psy13622        113 NQQLHSSVRTSNLDTSLRLLSQGADPNYFYQ  143 (143)
Q Consensus       113 ~~~l~~av~~~~~~~~~~ll~~Ga~~n~~~~  143 (143)
                      +.+|..||.+|.+..+--||+.|||+|.-|+
T Consensus       341 QTALMLAVSHGr~d~vk~LLacgAdVNiQDd  371 (452)
T KOG0514|consen  341 QTALMLAVSHGRVDMVKALLACGADVNIQDD  371 (452)
T ss_pred             chhhhhhhhcCcHHHHHHHHHccCCCccccC
Confidence            4689999999999999999999999999875

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=86.51  E-value=0.87  Score=27.72  Aligned_cols=29  Identities=34%  Similarity=0.380  Sum_probs=21.1

Q ss_pred             HHHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622        114 QQLHSSVRTSNLDTSLRLLSQGADPNYFY  142 (143)
Q Consensus       114 ~~l~~av~~~~~~~~~~ll~~Ga~~n~~~  142 (143)
                      ..|+.|+..++.+.+..||..|+|+|..|
T Consensus        18 T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d   46 (56)
T PF13857_consen   18 TPLHWAARYGHSEVVRLLLQNGADPNAKD   46 (56)
T ss_dssp             -HHHHHHHHT-HHHHHHHHHCT--TT---
T ss_pred             cHHHHHHHcCcHHHHHHHHHCcCCCCCCc
Confidence            58999999999999999999999999876

>KOG0511|consensus

Probab=86.09  E-value=1  Score=38.98  Aligned_cols=45  Identities=16%  Similarity=0.194  Sum_probs=36.1

Q ss_pred             HHHHhcCccccCCCCCHHHHHHHHHHhhhcCCHHHHHHHHHcCCCCCCcCC
Q psy13622         93 KAKYEQLSFMIRSNDTQEELNQQLHSSVRTSNLDTSLRLLSQGADPNYFYQ  143 (143)
Q Consensus        93 ~~KY~~k~f~~~~~~~~~~~~~~l~~av~~~~~~~~~~ll~~Ga~~n~~~~  143 (143)
                      ..||.--.|..+.+      ...|++|.++||+..+-.|+.-|+++|.+||
T Consensus        23 ~~~~~~s~~~~~~~------f~elceacR~GD~d~v~~LVetgvnVN~vD~   67 (516)
T KOG0511|consen   23 LQDYKPSVPLKKVP------FGELCEACRAGDVDRVRYLVETGVNVNAVDR   67 (516)
T ss_pred             hhhcCcccccccCc------hHHHHHHhhcccHHHHHHHHHhCCCcchhhc
Confidence            34555555555532      5689999999999999999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	143
2iqj_A	134	Crystal Structure Of The Gap Domain Of Smap1l (Loc6		1e-12
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		1e-10
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		2e-10
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		2e-10
2crr_A	141	Solution Structure Of Arfgap Domain From Human Smap		7e-08
1dcq_A	278	Crystal Structure Of The Arf-Gap Domain And Ankyrin		9e-08
3lvq_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		2e-07
2b0o_E	301	Crystal Structure Of Uplc1 Gap Domain Length = 301		2e-07
3feh_A	386	Crystal Structure Of Full Length Centaurin Alpha-1		6e-07
3fm8_C	392	Crystal Structure Of Full Length Centaurin Alpha-1		7e-07
2p57_A	144	Gap Domain Of Znf289, An Id1-Regulated Zinc Finger		7e-05
2crw_A	149	Solution Structure Of The Arfgap Domain Of Adp-Ribo		2e-04
3sub_A	163	Crystal Structure Of The Catalytic Domain Of Plasmo		4e-04

>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744) Stromal Membrane-Associated Protein 1-Like Length = 134

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 8   PKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEH 67
           P+W   N GV +C  C  IHR+LG HIS+VK +    W    +  +  + NG A  L+E 
Sbjct: 38  PRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGKANRLYEA 97
Query: 68  SLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSND 107
            L E  T ++P     + P    FI+ KYE+  +M RS D
Sbjct: 98  YLPE--TFRRP----QIDPAVEGFIRDKYEKKKYMDRSLD 131

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 4   RAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPS 63
           R   P+W  +N GV +C  C  IHRSLG H S+V+ L   +W P L+ ++  L N     
Sbjct: 52  REPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGNVIINQ 111
Query: 64  LWEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIR 104
           ++E +  E+   KKP PS      +A +I AKY +  F+ +
Sbjct: 112 IYE-ARVEAMAVKKPGPSCSRQEKEA-WIHAKYVEKKFLTK 150

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 4   RAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPS 63
           R   P+W  +N GV +C  C  IHRSLG H S+V+ L   +W P L+ ++  L N     
Sbjct: 52  REPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGNVIINQ 111
Query: 64  LWEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIR 104
           ++E  + E+   KKP PS      +A +I AKY +  F+ +
Sbjct: 112 IYEARV-EAMAVKKPGPSCSRQEKEA-WIHAKYVEKKFLTK 150

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 4   RAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPS 63
           R   P+W  +N GV +C  C  IHRSLG H S+V+ L   +W P L+ ++  L N     
Sbjct: 52  REPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGNVIINQ 111
Query: 64  LWEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIR 104
           ++E  + E+   KKP PS      +A +I AKY +  F+ +
Sbjct: 112 IYEARV-EAMAVKKPGPSCSRQEKEA-WIHAKYVEKKFLTK 150

>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1 Length = 141

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 36/68 (52%)
Query: 5   AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
           A  P+W   N GV +C  C  IHR+LG HIS+VK +    W    +  +  + N  A  L
Sbjct: 37  AKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDMGNTKARLL 96
Query: 65  WEHSLCES 72
           +E +L E+
Sbjct: 97  YEANLPEN 104

>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 4/134 (2%)
Query: 5   AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
           A DP W   N G+L C  C  IHR LG H S+++ L       S L +   + N G   +
Sbjct: 25  APDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNEI 84
Query: 65  WEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSN-DTQEELNQQLHSSVRTS 123
            E  L  S+   KP P   +   K ++I AKY +  +  + + DT  +L   L  +V+T 
Sbjct: 85  MECCL-PSEDPVKPNPGSDMIARK-DYITAKYMERRYARKKHADTAAKL-HSLCEAVKTR 141
Query: 124 NLDTSLRLLSQGAD 137
           ++   L+  + G D
Sbjct: 142 DIFGLLQAYADGVD 155

>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Length = 497

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 6/133 (4%)
Query: 5   AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
           AADP W   N GVL C  C  +HR LG   S+++ L      PS L + + + N     +
Sbjct: 31  AADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSFNEV 90
Query: 65  WEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSNDTQEELNQQLHSSVRTSN 124
            E  L      K    SD    T+ ++I AKY +  F  R   T E   Q+L +++   +
Sbjct: 91  MEAQLPSHGGPKPSAESD--MGTRRDYIMAKYVEHRFARRC--TPEP--QRLWTAICNRD 144
Query: 125 LDTSLRLLSQGAD 137
           L + L   + G D
Sbjct: 145 LLSVLEAFANGQD 157

>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain Length = 301

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 6/133 (4%)
Query: 5   AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
           AADP W   N GVL C  C  +HR LG   S+++ L      PS L + + + N     +
Sbjct: 50  AADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSFNEV 109
Query: 65  WEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSNDTQEELNQQLHSSVRTSN 124
            E  L      K    SD    T+ ++I AKY +  F  R   T E   Q+L +++   +
Sbjct: 110 MEAQLPSHGGPKPSAESD--MGTRRDYIMAKYVEHRFARRC--TPEP--QRLWTAICNRD 163
Query: 125 LDTSLRLLSQGAD 137
           L + L   + G D
Sbjct: 164 LLSVLEAFANGQD 176

>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1 Length = 386

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 5   AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
           A DP W     GV +C +C  IHR++ + +S+VK +    W  + +  + +  N  A + 
Sbjct: 42  APDPDWASYTLGVFICLSCSGIHRNIPQ-VSKVKSVRLDAWEEAQVEFMASHGNDAARAR 100
Query: 65  WEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFM 102
           +E  +       +P PSD     + ++I+AKYE+  F+
Sbjct: 101 FESKV--PSFYYRPTPSD-CQLLREQWIRAKYERQEFI 135

>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound With The Fha Domain Of Kif13b (Capri Target) Length = 392

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 5   AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
           A DP W     GV +C +C  IHR++ + +S+VK +    W  + +  + +  N  A + 
Sbjct: 44  APDPDWASYTLGVFICLSCSGIHRNIPQ-VSKVKSVRLDAWEEAQVEFMASHGNDAARAR 102
Query: 65  WEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFM 102
           +E  +       +P PSD     + ++I+AKYE+  F+
Sbjct: 103 FESKV--PSFYYRPTPSD-CQLLREQWIRAKYERQEFI 137

>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein Length = 144

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 6/97 (6%)
Query: 5   AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLE-PSTWPPSLLSMLMTLTNGGAPS 63
           A +P W  +  GV +C  C  +HRSLG H+S ++  E  S W    L  +    N  A +
Sbjct: 45  AKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNANATA 104
Query: 64  LWEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLS 100
            +    C +        S       A+  + K  QL 
Sbjct: 105 FFRQHGCTANDANTKYNSRA-----AQMYREKIRQLG 136

>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of Adp-Ribosylation Factor Gtpaseactivating Protein 3 (Arfgap 3) Length = 149

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 5   AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLE-PSTWPPSLLSMLMTLTNGGAPS 63
           A +P W  +  GV +C  C   HRSLG H+S ++  E  S W    L  +    N  A S
Sbjct: 37  AKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNASASS 96
Query: 64  LWEHSLCES 72
            +    C +
Sbjct: 97  FFHQHGCST 105

>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium Falciparum Arf Gtpase Activating Protein Length = 163

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 6  ADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSML 53
          ++P W  +N G+ +C  C  +HRSLG HIS V+ ++   +    L  +
Sbjct: 31 SNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYI 78

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	143
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	7e-36
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	8e-35
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	8e-32
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-30
2iqj_A	134	Stromal membrane-associated protein 1-like; zinc,	1e-24
2crr_A	141	Stromal membrane-associated protein SMAP1B; arfgap	2e-23
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	3e-21
2olm_A	140	Nucleoporin-like protein RIP; arfgap, GTPase-activ	3e-20
2owa_A	138	Arfgap-like finger domain containing protein; zinc	1e-17
3sub_A	163	ADP-ribosylation factor GTPase-activating protein;	4e-17
3dwd_A	147	ADP-ribosylation factor GTPase-activating protein;	2e-16
2p57_A	144	GTPase-activating protein ZNF289; zinc finger, GAP	7e-16
2crw_A	149	ARF GAP 3, ADP-ribosylation factor GTPase-activati	8e-16
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	4e-07

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score =  123 bits (310), Expect = 7e-36
 Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 2/135 (1%)

Query: 5   AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
           A DP W   N G+L C  C  IHR LG H S+++ L       S L +   + N G   +
Sbjct: 25  APDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNEI 84

Query: 65  WEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSNDTQEELNQQLHSSVRTSN 124
            E  L  S+   KP P       + ++I AKY +  +  + +         L  +V+T +
Sbjct: 85  MECCL-PSEDPVKPNPGSD-MIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTRD 142

Query: 125 LDTSLRLLSQGADPN 139
           +   L+  + G D  
Sbjct: 143 IFGLLQAYADGVDLT 157

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score =  121 bits (305), Expect = 8e-35
 Identities = 39/138 (28%), Positives = 58/138 (42%), Gaps = 6/138 (4%)

Query: 5   AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
           AADP W   N GVL C  C  +HR LG   S+++ L      PS L + + + N     +
Sbjct: 50  AADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSFNEV 109

Query: 65  WEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSNDTQEELNQQLHSSVRTSN 124
            E  L  S    KP        T+ ++I AKY +  F  R         Q+L +++   +
Sbjct: 110 MEAQL-PSHGGPKPSAESD-MGTRRDYIMAKYVEHRFARRCTPE----PQRLWTAICNRD 163

Query: 125 LDTSLRLLSQGADPNYFY 142
           L + L   + G D     
Sbjct: 164 LLSVLEAFANGQDFGQPL 181

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score =  116 bits (293), Expect = 8e-32
 Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 6/136 (4%)

Query: 5   AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
           AADP W   N GVL C  C  +HR LG   S+++ L      PS L + + + N     +
Sbjct: 31  AADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSFNEV 90

Query: 65  WEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSNDTQEELNQQLHSSVRTSN 124
            E  L  S    KP     +  T+ ++I AKY +  F  R         Q+L +++   +
Sbjct: 91  MEAQL-PSHGGPKPSAESDM-GTRRDYIMAKYVEHRFARRCTPE----PQRLWTAICNRD 144

Query: 125 LDTSLRLLSQGADPNY 140
           L + L   + G D   
Sbjct: 145 LLSVLEAFANGQDFGQ 160

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score =  111 bits (278), Expect = 2e-30
 Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 5   AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
              P+W  +N GV +C  C  IHRSLG H S+V+ L   +W P L+ ++  L N     +
Sbjct: 53  EPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGNVIINQI 112

Query: 65  WEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSNDTQEELNQQLHSSVRTS 123
           +E  + E+   KKP PS      K  +I AKY +  F+ +  + +     +     +  
Sbjct: 113 YEARV-EAMAVKKPGPSCSRQ-EKEAWIHAKYVEKKFLTKLPEIRGRRGGRGRPRGQPP 169

>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Length = 134

 Score = 91.0 bits (226), Expect = 1e-24
 Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 6/103 (5%)

Query: 5   AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
           +  P+W   N GV +C  C  IHR+LG HIS+VK +    W    +  +  + NG A  L
Sbjct: 35  SKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGKANRL 94

Query: 65  WEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSND 107
           +E  L   +T ++P     +      FI+ KYE+  +M RS D
Sbjct: 95  YEAYL--PETFRRPQIDPAV----EGFIRDKYEKKKYMDRSLD 131

>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 87.6 bits (217), Expect = 2e-23
 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 6/101 (5%)

Query: 5   AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
           A  P+W   N GV +C  C  IHR+LG HIS+VK +    W    +  +  + N  A  L
Sbjct: 37  AKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDMGNTKARLL 96

Query: 65  WEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRS 105
           +E +L   +  ++P            FI+ KYE+  +  ++
Sbjct: 97  YEANL--PENFRRPQTDQA----VEFFIRDKYEKKKYYDKN 131

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386

 Score = 87.1 bits (215), Expect = 3e-21
 Identities = 33/144 (22%), Positives = 57/144 (39%), Gaps = 9/144 (6%)

Query: 5   AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
           A DP W     GV +C +C  IHR++   +S+VK +    W  + +  + +  N  A + 
Sbjct: 42  APDPDWASYTLGVFICLSCSGIHRNIP-QVSKVKSVRLDAWEEAQVEFMASHGNDAARAR 100

Query: 65  WEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFM-----IRSNDTQEELNQQLHSS 119
           +E  +       +P PSD     + ++I+AKYE+  F+        +    E        
Sbjct: 101 FESKV--PSFYYRPTPSDC-QLLREQWIRAKYERQEFIYPEKQEPYSAGYREGFLWKRGR 157

Query: 120 VRTSNLDTSLRLLSQGADPNYFYQ 143
                L     L  +     YF +
Sbjct: 158 DNGQFLSRKFVLTEREGALKYFNR 181

>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Length = 140

 Score = 79.8 bits (197), Expect = 3e-20
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 4/98 (4%)

Query: 5   AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
              P +  +  G  VC +C    R L     +VK +  +T+    +  L    N     +
Sbjct: 33  QRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTFTQQEIEFLQKHGNEVCKQI 91

Query: 65  WEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFM 102
           W     + ++   P   DP      EF++ KYE+  + 
Sbjct: 92  WLGLF-DDRSSAIPDFRDP--QKVKEFLQEKYEKKRWY 126

>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Length = 138

 Score = 73.3 bits (180), Expect = 1e-17
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 5   AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
           + +P W  L+  V +C  C S HR +G HIS V+  +   + P  L  +    NG A + 
Sbjct: 44  SRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGNGRARNY 103

Query: 65  WEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQ 98
           ++  L  +        S       +     +Y+Q
Sbjct: 104 FKQVLGVN-------FSPKTKEYASSICGRQYKQ 130

>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Length = 163

 Score = 72.3 bits (177), Expect = 4e-17
 Identities = 22/137 (16%), Positives = 52/137 (37%), Gaps = 4/137 (2%)

Query: 5   AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
            ++P W  +N G+ +C  C  +HRSLG HIS V+ ++   +    L  +    N    + 
Sbjct: 30  ISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGNKKCQTY 89

Query: 65  WEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSNDTQEELNQQLHSSVRTSN 124
            E+        ++            + +++    +           +  + L +  R  N
Sbjct: 90  LENYGISDFIPERK-YRTKAADHYRKILRSIVHNVDP---PAPLPLDEGKSLINYGRNEN 145

Query: 125 LDTSLRLLSQGADPNYF 141
           ++ + +      +P++ 
Sbjct: 146 VNENNKNQYSNEEPDFI 162

>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Length = 147

 Score = 69.9 bits (171), Expect = 2e-16
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 3/95 (3%)

Query: 5   AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
           A +P+W  +  G+ +C  C   HR LG H+S V+ +    W    L  +    N      
Sbjct: 46  AFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFREF 105

Query: 65  WEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQL 99
            E               +  +   A   + K   L
Sbjct: 106 LESQED---YDPCWSLQEKYNSRAAALFRDKVVAL 137

>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Length = 144

 Score = 68.4 bits (167), Expect = 7e-16
 Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 6/96 (6%)

Query: 5   AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLE-PSTWPPSLLSMLMTLTNGGAPS 63
           A +P W  +  GV +C  C  +HRSLG H+S ++  E  S W    L  +    N  A +
Sbjct: 45  AKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNANATA 104

Query: 64  LWEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQL 99
            +    C +        S       A+  + K  QL
Sbjct: 105 FFRQHGCTANDANTKYNSR-----AAQMYREKIRQL 135

>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 149

 Score = 68.5 bits (167), Expect = 8e-16
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 6/97 (6%)

Query: 5   AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLE-PSTWPPSLLSMLMTLTNGGAPS 63
           A +P W  +  GV +C  C   HRSLG H+S ++  E  S W    L  +    N  A S
Sbjct: 37  AKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNASASS 96

Query: 64  LWEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLS 100
            +    C +        S       A+  + K + L+
Sbjct: 97  FFHQHGCSTNDTNAKYNSR-----AAQLYREKIKSLA 128

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 46.8 bits (111), Expect = 4e-07
 Identities = 27/134 (20%), Positives = 43/134 (32%), Gaps = 5/134 (3%)

Query: 5   AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPS-LLSMLMTLTNGGAPS 63
           A +P+W  +  G+ +C  C   HR LG H+S V+ +    W    L  M      GG   
Sbjct: 45  AFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKM----KAGGNAK 100

Query: 64  LWEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSNDTQEELNQQLHSSVRTS 123
             E    +          +  +   A   + K   L+     +              R  
Sbjct: 101 FREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREWSLESSPAQNWTPPQPRGL 160

Query: 124 NLDTSLRLLSQGAD 137
                +R+L  G D
Sbjct: 161 FGKKEMRILMVGLD 174

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	143
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	100.0
2iqj_A	134	Stromal membrane-associated protein 1-like; zinc,	100.0
2crr_A	141	Stromal membrane-associated protein SMAP1B; arfgap	100.0
2olm_A	140	Nucleoporin-like protein RIP; arfgap, GTPase-activ	100.0
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	100.0
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	100.0
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	100.0
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	100.0
2owa_A	138	Arfgap-like finger domain containing protein; zinc	100.0
3dwd_A	147	ADP-ribosylation factor GTPase-activating protein;	99.98
2crw_A	149	ARF GAP 3, ADP-ribosylation factor GTPase-activati	99.98
2p57_A	144	GTPase-activating protein ZNF289; zinc finger, GAP	99.97
3sub_A	163	ADP-ribosylation factor GTPase-activating protein;	99.97
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.94
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	90.28
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	85.42
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	84.67
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	82.15
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	80.63

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=100.00  E-value=4.8e-42  Score=285.12  Aligned_cols=140  Identities=32%  Similarity=0.544  Sum_probs=123.9

Q ss_pred             CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHHhccccccccCCCCCCC
Q psy13622          1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLCESKTKKKPVP   80 (143)
Q Consensus         1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~~ea~~~~~~~~~kP~~   80 (143)
                      +|||+++|+|||+|+|||||++||||||+||+|||+|||++||.|++++|++|+.+||..+|++||+++++ ....||.|
T Consensus        49 ~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~gn~~~n~~~e~~~~~-~~~~kp~~  127 (368)
T 3jue_A           49 CDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGNVIINQIYEARVEA-MAVKKPGP  127 (368)
T ss_dssp             TTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHSCHHHHHHHHTTTTTT-TTCCCCCT
T ss_pred             CCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHHHHHccHHHHHHHHhhccc-ccCcCCCC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999973 34578998


Q ss_pred             CCCChHHHHHHHHHHHhcCccccCCCCC------------------------------------HHHH-----HHHHHHh
Q psy13622         81 SDPLHPTKAEFIKAKYEQLSFMIRSNDT------------------------------------QEEL-----NQQLHSS  119 (143)
Q Consensus        81 ~~~~~~~r~~fI~~KY~~k~f~~~~~~~------------------------------------~~~~-----~~~l~~a  119 (143)
                      +++. +.|++||++||++|+|+.+....                                    .+++     ...|+.|
T Consensus       128 ~~~~-~~re~fIr~KY~~k~f~~~l~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~L~~A  206 (368)
T 3jue_A          128 SCSR-QEKEAWIHAKYVEKKFLTKLPEIRGRRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRA  206 (368)
T ss_dssp             TSCH-HHHHHHHHHHHTSCTTCCSCC--------------------------------------------CCHHHHHHHH
T ss_pred             CCCH-HHHHHHHHHHHHhhcccccchhhhhccccccCcccCCCCCCCcccCCCCccccccccccccccccCCCCcHHHHH
Confidence            8775 89999999999999999874211                                    0111     2489999


Q ss_pred             hhc-CCHHHHHHHHHcCCCCCCcC
Q psy13622        120 VRT-SNLDTSLRLLSQGADPNYFY  142 (143)
Q Consensus       120 v~~-~~~~~~~~ll~~Ga~~n~~~  142 (143)
                      +.. +++..+..||..|+|+|..+
T Consensus       207 a~~~g~~~~v~~LL~~Gadvn~~~  230 (368)
T 3jue_A          207 SGHPPSLPTMADALAHGADVNWVN  230 (368)
T ss_dssp             TSSSCCHHHHHHHHHTTCCTTCCC
T ss_pred             HHccCCHHHHHHHHHcCCCCCccc
Confidence            999 99999999999999999876

>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}

Probab=100.00  E-value=1.7e-42  Score=253.52  Aligned_cols=99  Identities=36%  Similarity=0.677  Sum_probs=91.7

Q ss_pred             CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHHhccccccccCCCCCCC
Q psy13622          1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLCESKTKKKPVP   80 (143)
Q Consensus         1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~~ea~~~~~~~~~kP~~   80 (143)
                      +|||+++|+|||+|+|||||++|||+||+||+|||+|||++||+|++++|++|+.+||..+|++||+++|+  .+.+|.+
T Consensus        31 aDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m~~~GN~~an~~~e~~lp~--~~~~P~~  108 (134)
T 2iqj_A           31 ADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGKANRLYEAYLPE--TFRRPQI  108 (134)
T ss_dssp             TTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHTCHHHHHHHHHTTTCCS--SCCCCCS
T ss_pred             CcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHHHHHchHHHHHHHHhcCCc--cCCCCCc
Confidence            69999999999999999999999999999999999999999999999999999999999999999999974  3456654


Q ss_pred             CCCChHHHHHHHHHHHhcCccccCC
Q psy13622         81 SDPLHPTKAEFIKAKYEQLSFMIRS  105 (143)
Q Consensus        81 ~~~~~~~r~~fI~~KY~~k~f~~~~  105 (143)
                      +    +.+++||++||++|+|+.+.
T Consensus       109 ~----~~~e~fIr~KY~~k~f~~~~  129 (134)
T 2iqj_A          109 D----PAVEGFIRDKYEKKKYMDRS  129 (134)
T ss_dssp             H----HHHHHHHHHHHTSCTTCCTT
T ss_pred             h----HHHHHHHHHHHhCCeeeCCc
Confidence            2    57999999999999999874

>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=100.00  E-value=4.1e-42  Score=253.41  Aligned_cols=98  Identities=32%  Similarity=0.600  Sum_probs=91.3

Q ss_pred             CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHHhccccccccCCCCCCC
Q psy13622          1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLCESKTKKKPVP   80 (143)
Q Consensus         1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~~ea~~~~~~~~~kP~~   80 (143)
                      +|||+++|+|||+|||||||++|||+||+||+|||+||||+||+|++++|++|+.+||..+|++||+++|+  ...+|.+
T Consensus        33 aDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~~~GN~~an~~~e~~lp~--~~~~P~~  110 (141)
T 2crr_A           33 ADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDMGNTKARLLYEANLPE--NFRRPQT  110 (141)
T ss_dssp             SSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHHHTHHHHHHHHGGGSCCT--TCCCCCS
T ss_pred             CCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHHHHHccHHHHHHHHhcCCc--ccCCCCc
Confidence            69999999999999999999999999999999999999999999999999999999999999999999974  3456654


Q ss_pred             CCCChHHHHHHHHHHHhcCccccC
Q psy13622         81 SDPLHPTKAEFIKAKYEQLSFMIR  104 (143)
Q Consensus        81 ~~~~~~~r~~fI~~KY~~k~f~~~  104 (143)
                      +    +.+++||++||++|+|+.+
T Consensus       111 ~----~~~e~fIr~KY~~k~f~~~  130 (141)
T 2crr_A          111 D----QAVEFFIRDKYEKKKYYDK  130 (141)
T ss_dssp             H----HHHHHHHHHHHTSCTTCCC
T ss_pred             h----HHHHHHHHHHHhcCcccCC
Confidence            2    5789999999999999987

>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A

Probab=100.00  E-value=3.2e-41  Score=248.40  Aligned_cols=100  Identities=21%  Similarity=0.411  Sum_probs=90.8

Q ss_pred             CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHHhccccccccCCCCCCC
Q psy13622          1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLCESKTKKKPVP   80 (143)
Q Consensus         1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~~ea~~~~~~~~~kP~~   80 (143)
                      +|||+++|+|||+|||||||++||||||+||+| |+||||+||+|++++|++|+.+||..+|++||+++++ ...++|.+
T Consensus        29 aDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~-s~VrSl~ld~w~~~~l~~m~~~GN~~an~~~e~~~~~-~~~~~P~~  106 (140)
T 2olm_A           29 FDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDD-RSSAIPDF  106 (140)
T ss_dssp             TTTCSSCCCEEETTTTEEECHHHHHHHTTSSSC-CCEEETTTCCCCHHHHHHHHHCHHHHHHHHHTTTCCT-TTSCCCCT
T ss_pred             CCCCCCCCCceeeccCEEEchhccchhccCCCc-ceeeecCCCCCCHHHHHHHHHhccHHHHHHHHhhCCc-ccCCCCCC
Confidence            699999999999999999999999999999996 9999999999999999999999999999999999963 34456655


Q ss_pred             CCCChHHHHHHHHHHHhcCccccC
Q psy13622         81 SDPLHPTKAEFIKAKYEQLSFMIR  104 (143)
Q Consensus        81 ~~~~~~~r~~fI~~KY~~k~f~~~  104 (143)
                      ++.  +.+++||++||++++|+.+
T Consensus       107 ~d~--~~~~~fIr~KYe~k~f~~~  128 (140)
T 2olm_A          107 RDP--QKVKEFLQEKYEKKRWYVP  128 (140)
T ss_dssp             TCH--HHHHHHHHHHHTSCTTCCC
T ss_pred             CCH--HHHHHHHHHHHcCCeeeCC
Confidence            432  5788999999999999987

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=100.00  E-value=3.9e-38  Score=267.61  Aligned_cols=135  Identities=28%  Similarity=0.427  Sum_probs=124.0

Q ss_pred             CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHHhccccccccCCCCCCC
Q psy13622          1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLCESKTKKKPVP   80 (143)
Q Consensus         1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~~ea~~~~~~~~~kP~~   80 (143)
                      .|||+++|+|+|+|+|||+|++|||+||+||+|||||||++||.|+++++++|+.+||..+|.+||+.+|+ ....+|.+
T Consensus        27 ~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~~GN~~an~i~E~~lp~-~~~~kP~~  105 (497)
T 3lvq_E           27 CDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSFNEVMEAQLPS-HGGPKPSA  105 (497)
T ss_dssp             TTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTTCCHHHHHHHHTTTCCS-SSCSCCCT
T ss_pred             cCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHHHHHhhHHHHHHHHhhccc-ccCCCCCC
Confidence            59999999999999999999999999999999999999999999999999999999999999999999974 34578887


Q ss_pred             CCCChHHHHHHHHHHHhcCccccCCCCCHHHHHHHHHHhhhcCCHHHHHHHHHcCCCCCCc
Q psy13622         81 SDPLHPTKAEFIKAKYEQLSFMIRSNDTQEELNQQLHSSVRTSNLDTSLRLLSQGADPNYF  141 (143)
Q Consensus        81 ~~~~~~~r~~fI~~KY~~k~f~~~~~~~~~~~~~~l~~av~~~~~~~~~~ll~~Ga~~n~~  141 (143)
                      .++. ..|++||++||+++.|..+...+.    ++|+.|+..|++..+..||..|+|+|..
T Consensus       106 ~s~~-~~re~fIraky~~~~f~~~~~~~~----~~L~~A~~~g~~~~v~~ll~~g~~~n~~  161 (497)
T 3lvq_E          106 ESDM-GTRRDYIMAKYVEHRFARRCTPEP----QRLWTAICNRDLLSVLEAFANGQDFGQP  161 (497)
T ss_dssp             TCCH-HHHHHHHHHHHTTCTTSCCCC-CH----HHHHHHHHHTCHHHHHHHHHTTCCSSSC
T ss_pred             cCcH-HHHHHHHHHHhhcccccccccccH----HHHHHHHhccCHHHHHHHHhhcccccCC
Confidence            7765 799999999999999999865544    6799999999999999999999999865

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=100.00  E-value=2e-37  Score=246.53  Aligned_cols=138  Identities=26%  Similarity=0.414  Sum_probs=128.8

Q ss_pred             CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHHhccccccccCCCCCCC
Q psy13622          1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLCESKTKKKPVP   80 (143)
Q Consensus         1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~~ea~~~~~~~~~kP~~   80 (143)
                      +|||+++|+|+|+|+|+|+|++|||+||+||+|||+|||++||.|+++++.+|..+||..+|++||+.++.+ ...+|.|
T Consensus        21 ~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~-~~~kP~~   99 (278)
T 1dcq_A           21 CDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNEIMECCLPSE-DPVKPNP   99 (278)
T ss_dssp             TTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSS-SCCSCCT
T ss_pred             CCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHHHHHHHhhCChh-hcCCCCC
Confidence            599999999999999999999999999999999999999999999999999999999999999999999753 3458888


Q ss_pred             CCCChHHHHHHHHHHHhcCccccCCCCCHHHHHHHHHHhhhcCCHHHHHHHHHcCCCCCC
Q psy13622         81 SDPLHPTKAEFIKAKYEQLSFMIRSNDTQEELNQQLHSSVRTSNLDTSLRLLSQGADPNY  140 (143)
Q Consensus        81 ~~~~~~~r~~fI~~KY~~k~f~~~~~~~~~~~~~~l~~av~~~~~~~~~~ll~~Ga~~n~  140 (143)
                      .++. ..+++||++||..++|..+...+.......|+.|++.+|+..+..++..|+++|.
T Consensus       100 ~s~~-~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~  158 (278)
T 1dcq_A          100 GSDM-IARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTE  158 (278)
T ss_dssp             TCCH-HHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTS
T ss_pred             CCCH-HHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhcccHHHHHHHHhhcchhh
Confidence            7765 8999999999999999999877888888999999999999999999999999774

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=100.00  E-value=3e-37  Score=248.30  Aligned_cols=134  Identities=28%  Similarity=0.438  Sum_probs=122.2

Q ss_pred             CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHHhccccccccCCCCCCC
Q psy13622          1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLCESKTKKKPVP   80 (143)
Q Consensus         1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~~ea~~~~~~~~~kP~~   80 (143)
                      +|||+++|+|||+|+|||+|++|||+||+||+|+|+|||++||.|+++++.+|..+||..+|++||+.++. ....+|.+
T Consensus        46 ~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~~~GN~~~n~i~E~~l~~-~~~~kP~~  124 (301)
T 2b0o_E           46 CDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSFNEVMEAQLPS-HGGPKPSA  124 (301)
T ss_dssp             TTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHCCHHHHHHHHTTTCCS-SSCSCCCT
T ss_pred             CCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHHHHcCCHHHHHHHHHhhhh-ccCCCCCC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999974 34578887


Q ss_pred             CCCChHHHHHHHHHHHhcCccccCCCCCHHHHHHHHHHhhhcCCHHHHHHHHHcCCCCCC
Q psy13622         81 SDPLHPTKAEFIKAKYEQLSFMIRSNDTQEELNQQLHSSVRTSNLDTSLRLLSQGADPNY  140 (143)
Q Consensus        81 ~~~~~~~r~~fI~~KY~~k~f~~~~~~~~~~~~~~l~~av~~~~~~~~~~ll~~Ga~~n~  140 (143)
                      .++. ..|++||++||++++|..+....    .+.|+.|+..+++..+..|+..|+|+|.
T Consensus       125 ~s~~-~~r~~~I~~Ky~~~~f~~~~~~~----~~~L~~A~~~g~~~~v~~ll~~g~d~~~  179 (301)
T 2b0o_E          125 ESDM-GTRRDYIMAKYVEHRFARRCTPE----PQRLWTAICNRDLLSVLEAFANGQDFGQ  179 (301)
T ss_dssp             TCCH-HHHHHHHHHHHTSCTTSCCCC-C----HHHHHHHHHTTCHHHHHHHHHTTCCTTS
T ss_pred             cccH-HHHHHHHHHHHHhhhhhcccCch----HHHHhhhhhccCHHHHHHHHhcCCcccc
Confidence            7665 89999999999999999875433    3579999999999999999999999987

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=100.00  E-value=8.7e-37  Score=255.67  Aligned_cols=101  Identities=28%  Similarity=0.563  Sum_probs=95.1

Q ss_pred             CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHHhccccccccCCCCCCC
Q psy13622          1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLCESKTKKKPVP   80 (143)
Q Consensus         1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~~ea~~~~~~~~~kP~~   80 (143)
                      +|||+++|+|||+|+|||||++|||+||+| +|||+||||+||.|++++|++|+.+||..+|++||+++|+  ...+|.|
T Consensus        38 ~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l-~his~v~s~~ld~w~~~~~~~~~~~gN~~~~~~~e~~~~~--~~~~p~~  114 (386)
T 3lju_X           38 ADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMASHGNDAARARFESKVPS--FYYRPTP  114 (386)
T ss_dssp             TTTCCBSCCEEETTTTEEECHHHHHHHHTC-TTTCCEEETTTSCCCHHHHHHHHHSSHHHHHHHHTTTCCT--TSCCCCT
T ss_pred             ccCCCCCCCeEEecccEEEhhhhchHhhCC-CccceeeeecccCCCHHHHHHHHHhcchHHHHHHhccCCc--cCCCCCC
Confidence            699999999999999999999999999999 9999999999999999999999999999999999999963  4578998


Q ss_pred             CCCChHHHHHHHHHHHhcCccccCC
Q psy13622         81 SDPLHPTKAEFIKAKYEQLSFMIRS  105 (143)
Q Consensus        81 ~~~~~~~r~~fI~~KY~~k~f~~~~  105 (143)
                      +++. ..|++||++||++++|+.+.
T Consensus       115 ~~~~-~~~e~fIr~KY~~~~f~~~~  138 (386)
T 3lju_X          115 SDCQ-LLREQWIRAKYERQEFIYPE  138 (386)
T ss_dssp             TSCH-HHHHHHHHHHHTSCTTTSGG
T ss_pred             ccch-HHHHHEHHhhhCCCEEECCc
Confidence            8765 78999999999999999874

>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=7.2e-36  Score=219.23  Aligned_cols=93  Identities=25%  Similarity=0.386  Sum_probs=83.1

Q ss_pred             CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHHhccccccccCCCCCCC
Q psy13622          1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLCESKTKKKPVP   80 (143)
Q Consensus         1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~~ea~~~~~~~~~kP~~   80 (143)
                      +|||+++|+|||+|||||||++|||+||+||+|||+|||++||+|++++|++|+.+||..+|++||++..-     .|  
T Consensus        40 aDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~~~GN~~an~~~e~~~~~-----~~--  112 (138)
T 2owa_A           40 FDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGNGRARNYFKQVLGV-----NF--  112 (138)
T ss_dssp             TTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHHHCCHHHHHHHHHHHTCT-----TC--
T ss_pred             CCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHHHhhccHHHHHHHHHHcCC-----CC--
Confidence            69999999999999999999999999999999999999999999999999999999999999999985421     12  


Q ss_pred             CCCChHHHHHHHHHHHhcCc
Q psy13622         81 SDPLHPTKAEFIKAKYEQLS  100 (143)
Q Consensus        81 ~~~~~~~r~~fI~~KY~~k~  100 (143)
                      +.+..+..+.|+.+||+++.
T Consensus       113 ~~~~~~kY~s~~a~~Y~~kL  132 (138)
T 2owa_A          113 SPKTKEYASSICGRQYKQIL  132 (138)
T ss_dssp             CGGGCHHHHSHHHHHHHHHH
T ss_pred             CCCHHHHHhhHHHHHHHHHH
Confidence            22334789999999999874

>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}

Probab=99.98  E-value=5.5e-34  Score=210.39  Aligned_cols=69  Identities=25%  Similarity=0.450  Sum_probs=65.6

Q ss_pred             CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHHhcccc
Q psy13622          1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSL   69 (143)
Q Consensus         1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~~ea~~   69 (143)
                      +|||+++|+|||+|||||||++|||+||+||+|||+||||+||+|++++|+.|+.+||.++|+|||++.
T Consensus        42 aDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~~GN~~an~~~ea~~  110 (147)
T 3dwd_A           42 FECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFREFLESQE  110 (147)
T ss_dssp             TTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHHCCHHHHHHHHHTST
T ss_pred             CCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHHHhhHHHHHHHHhCC
Confidence            699999999999999999999999999999999999999999999999999999999999999999874

>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.98  E-value=6.8e-34  Score=210.94  Aligned_cols=70  Identities=30%  Similarity=0.584  Sum_probs=68.1

Q ss_pred             CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCC-CChHHHHHHHhhccCchhHHhccccc
Q psy13622          1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPST-WPPSLLSMLMTLTNGGAPSLWEHSLC   70 (143)
Q Consensus         1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~-w~~~~v~~~~~~GN~~~n~~~ea~~~   70 (143)
                      +|||+++|+|||+|||||||++|+|+||+||+|||+|||++||+ |++++|+.|+.+||.++|+|||+++.
T Consensus        33 aDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m~~~GN~~an~~~e~~~~  103 (149)
T 2crw_A           33 FDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNASASSFFHQHGC  103 (149)
T ss_dssp             SSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHHHTTCHHHHHHHHHHHCC
T ss_pred             CCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHHHHHhhHHHHHHHHhcCC
Confidence            69999999999999999999999999999999999999999996 99999999999999999999999974

>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}

Probab=99.97  E-value=4.1e-32  Score=200.10  Aligned_cols=69  Identities=28%  Similarity=0.548  Sum_probs=67.4

Q ss_pred             CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCC-CChHHHHHHHhhccCchhHHhcccc
Q psy13622          1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPST-WPPSLLSMLMTLTNGGAPSLWEHSL   69 (143)
Q Consensus         1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~-w~~~~v~~~~~~GN~~~n~~~ea~~   69 (143)
                      +|||+++|+|||+|||||||++|||+||+||+|||+|||++||+ |++++|+.|+.+||+++|++||++.
T Consensus        41 aDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~~~GN~~an~~~e~~g  110 (144)
T 2p57_A           41 FDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHG  110 (144)
T ss_dssp             TTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHHHCCHHHHHHHHHHTT
T ss_pred             CCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHHHhCHHHHHHHHHHcC
Confidence            69999999999999999999999999999999999999999996 9999999999999999999999885

>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}

Probab=99.97  E-value=6.9e-32  Score=201.86  Aligned_cols=70  Identities=26%  Similarity=0.480  Sum_probs=68.4

Q ss_pred             CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHHhccccc
Q psy13622          1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLC   70 (143)
Q Consensus         1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~~ea~~~   70 (143)
                      +|||+++|+|||+|||||||++|||+||+||+|||+|||++||.|++++|++|+.+||.++|++||++..
T Consensus        26 aDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~~~GN~~an~~~e~~g~   95 (163)
T 3sub_A           26 FDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGNKKCQTYLENYGI   95 (163)
T ss_dssp             TTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHHHCCHHHHHHHHHHTTC
T ss_pred             ccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHHhhCHHHHHHHHHHcCC
Confidence            6999999999999999999999999999999999999999999999999999999999999999999875

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.94  E-value=4.7e-28  Score=197.73  Aligned_cols=69  Identities=25%  Similarity=0.450  Sum_probs=67.7

Q ss_pred             CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHHhcccc
Q psy13622          1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSL   69 (143)
Q Consensus         1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~~ea~~   69 (143)
                      +|||+++|+|||+|+|||+|++|||+||+||+|||+|||++||.|++++++.|+.+||..+|++||++.
T Consensus        41 ~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~~~~gN~~~n~~~e~~~  109 (329)
T 3o47_A           41 FECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFREFLESQE  109 (329)
T ss_dssp             TTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHHHHCCHHHHHHHHHTCS
T ss_pred             CCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHHHHhCcHHHHHHHHhcC
Confidence            699999999999999999999999999999999999999999999999999999999999999999885

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=90.28  E-value=0.36  Score=37.28  Aligned_cols=31  Identities=29%  Similarity=0.372  Sum_probs=26.2

Q ss_pred             HHHHHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622        112 LNQQLHSSVRTSNLDTSLRLLSQGADPNYFY  142 (143)
Q Consensus       112 ~~~~l~~av~~~~~~~~~~ll~~Ga~~n~~~  142 (143)
                      -...|+.||+.|++..+..||..|||+|..+
T Consensus        25 ~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~   55 (337)
T 4g8k_A           25 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQE   55 (337)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHTCCTTCCC
T ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCCccC
Confidence            3467899999999999999999999998764

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=85.42  E-value=0.84  Score=28.37  Aligned_cols=28  Identities=36%  Similarity=0.388  Sum_probs=18.5

Q ss_pred             HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622        115 QLHSSVRTSNLDTSLRLLSQGADPNYFY  142 (143)
Q Consensus       115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~  142 (143)
                      .|+.|+..+++..+..|+..|+|+|..|
T Consensus         5 ~L~~A~~~~~~~~v~~Ll~~g~~~n~~d   32 (93)
T 1n0q_A            5 PLHLAARNGHLEVVKLLLEAGADVNAKD   32 (93)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcccC
Confidence            3566666777766666677777776654

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=84.67  E-value=1.2  Score=28.84  Aligned_cols=30  Identities=23%  Similarity=0.226  Sum_probs=19.1

Q ss_pred             HHHHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622        113 NQQLHSSVRTSNLDTSLRLLSQGADPNYFY  142 (143)
Q Consensus       113 ~~~l~~av~~~~~~~~~~ll~~Ga~~n~~~  142 (143)
                      ...|+.|+..+++..+..|+..|+++|..|
T Consensus        25 ~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d   54 (110)
T 2zgd_A           25 GKKLLEAARAGQDDEVRILMANGADVAAKD   54 (110)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCCCccC
Confidence            345666666666666666666666666544

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=82.15  E-value=1.5  Score=27.15  Aligned_cols=28  Identities=36%  Similarity=0.388  Sum_probs=25.3

Q ss_pred             HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622        115 QLHSSVRTSNLDTSLRLLSQGADPNYFY  142 (143)
Q Consensus       115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~  142 (143)
                      .|+.|+..+++..+..|+..|+|+|..|
T Consensus        38 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~d   65 (93)
T 1n0q_A           38 PLHLAARNGHLEVVKLLLEAGADVNAKD   65 (93)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccC
Confidence            6889999999999999999999999876

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=80.63  E-value=1.8  Score=27.83  Aligned_cols=28  Identities=32%  Similarity=0.348  Sum_probs=25.7

Q ss_pred             HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622        115 QLHSSVRTSNLDTSLRLLSQGADPNYFY  142 (143)
Q Consensus       115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~  142 (143)
                      .|+.|+..+++..+..|+..|+++|..|
T Consensus        60 pLh~A~~~~~~~~v~~Ll~~ga~~~~~d   87 (110)
T 2zgd_A           60 PLHLAARNGHLEVVKLLLEAGADVXAQD   87 (110)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccc
Confidence            6899999999999999999999999775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	143
d1dcqa2	122	g.45.1.1 (A:247-368) Pyk2-associated protein beta	9e-24

>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 87.4 bits (216), Expect = 9e-24
 Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 2/102 (1%)

Query: 5   AADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSL 64
           A DP W   N G+L C  C  IHR LG H S+++ L       S L +   + N G   +
Sbjct: 23  APDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNEI 82

Query: 65  WEHSLCESKTKKKPVPSDPLHPTKAEFIKAKYEQLSFMIRSN 106
            E  L  S+   KP P   +   + ++I AKY +  +  + +
Sbjct: 83  MECCL-PSEDPVKPNPGSDMIA-RKDYITAKYMERRYARKKH 122

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	143
d1dcqa2	122	Pyk2-associated protein beta ARF-GAP domain {Mouse	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	91.83
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	86.06
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	83.08
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	82.2
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	80.32

>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-43  Score=253.62  Aligned_cols=102  Identities=29%  Similarity=0.497  Sum_probs=95.6

Q ss_pred             CCCCCCCCCeeecccceeeccchhhhhhcCCCCcceeeeCCCCCCChHHHHHHHhhccCchhHHhccccccccCCCCCCC
Q psy13622          1 MSSRAADPKWGILNKGVLVCDACCSIHRSLGRHISQVKYLEPSTWPPSLLSMLMTLTNGGAPSLWEHSLCESKTKKKPVP   80 (143)
Q Consensus         1 ~DCga~~P~was~n~gvfiC~~CsgiHR~lg~~iskVks~~ld~w~~~~v~~~~~~GN~~~n~~~ea~~~~~~~~~kP~~   80 (143)
                      +|||+++|+|||+|||||||++|||+||+||+|||+|||++||+|++++|++|+.+||..+|++||++++. ....+|.|
T Consensus        19 aDC~~~~p~w~s~n~GvfvC~~CsgiHR~lg~~is~VkS~~ld~w~~~~i~~~~~~GN~~~n~~~ea~~~~-~~~~kp~~   97 (122)
T d1dcqa2          19 CDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNEIMECCLPS-EDPVKPNP   97 (122)
T ss_dssp             TTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHHHHTTTCCS-SSCCSCCT
T ss_pred             CCCCCCCCCeEEecCCEEEchhhhHHHhcCCCCceEeeecccCCCCHHHHHHHHHHhHHHHHHHHHhhCCc-ccCcCCCC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999973 34568888


Q ss_pred             CCCChHHHHHHHHHHHhcCccccC
Q psy13622         81 SDPLHPTKAEFIKAKYEQLSFMIR  104 (143)
Q Consensus        81 ~~~~~~~r~~fI~~KY~~k~f~~~  104 (143)
                      +++. ..|++||++||++|+|+.+
T Consensus        98 ~~~~-~~r~~fI~~KY~~k~f~~k  120 (122)
T d1dcqa2          98 GSDM-IARKDYITAKYMERRYARK  120 (122)
T ss_dssp             TCCH-HHHHHHHHHHHTTCTTSCC
T ss_pred             CccH-HHHHHHHHHHHHhCccccc
Confidence            7765 7899999999999999976

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=91.83  E-value=0.062  Score=38.60  Aligned_cols=29  Identities=31%  Similarity=0.486  Sum_probs=27.1

Q ss_pred             HHHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622        114 QQLHSSVRTSNLDTSLRLLSQGADPNYFY  142 (143)
Q Consensus       114 ~~l~~av~~~~~~~~~~ll~~Ga~~n~~~  142 (143)
                      ..|+.|++.|++..+..||..|+|+|..|
T Consensus        42 t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d   70 (291)
T d1s70b_          42 AVFLAACSSGDTEEVLRLLERGADINYAN   70 (291)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHCCCTTCBC
T ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCCccC
Confidence            57999999999999999999999999876

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.06  E-value=0.29  Score=34.42  Aligned_cols=28  Identities=18%  Similarity=0.024  Sum_probs=25.5

Q ss_pred             HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622        115 QLHSSVRTSNLDTSLRLLSQGADPNYFY  142 (143)
Q Consensus       115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~  142 (143)
                      .|+.|++.++.+.+-.||..|||+|..|
T Consensus       256 pL~~A~~~~~~eiv~~Ll~~GAd~n~~d  283 (285)
T d1wdya_         256 ALLLAVELKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCccc
Confidence            6899999999999988999999999877

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.08  E-value=0.37  Score=30.52  Aligned_cols=28  Identities=32%  Similarity=0.260  Sum_probs=25.6

Q ss_pred             HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622        115 QLHSSVRTSNLDTSLRLLSQGADPNYFY  142 (143)
Q Consensus       115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~  142 (143)
                      .|+.|+..++...+..|+..|+|+|..|
T Consensus        71 pLh~A~~~~~~~~v~~Ll~~Gad~~~~d   98 (118)
T d1myoa_          71 PLLSAVYEGHVSCVKLLLSKGADKTVKG   98 (118)
T ss_dssp             HHHHHHTTTCCHHHHHHHTTCCCSSSSS
T ss_pred             chhhhhhcCchhhhhhhhcccccceeeC
Confidence            6889999999999999999999999876

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.20  E-value=0.63  Score=29.87  Aligned_cols=28  Identities=21%  Similarity=0.241  Sum_probs=25.4

Q ss_pred             HHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622        115 QLHSSVRTSNLDTSLRLLSQGADPNYFY  142 (143)
Q Consensus       115 ~l~~av~~~~~~~~~~ll~~Ga~~n~~~  142 (143)
                      .|+.|+..+++..+..|+.+|+|+|..+
T Consensus        70 pLh~A~~~g~~~~v~~Ll~~ga~v~~~~   97 (130)
T d1ycsb1          70 PLHCAASCNNVQVCKFLVESGAAVFAMT   97 (130)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             cccccchhhHHHHHHHHHHcCCCccccc
Confidence            7899999999999999999999998654

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.32  E-value=0.72  Score=30.14  Aligned_cols=29  Identities=28%  Similarity=0.268  Sum_probs=25.6

Q ss_pred             HHHHHhhhcCCHHHHHHHHHcCCCCCCcC
Q psy13622        114 QQLHSSVRTSNLDTSLRLLSQGADPNYFY  142 (143)
Q Consensus       114 ~~l~~av~~~~~~~~~~ll~~Ga~~n~~~  142 (143)
                      ..|+.|+..++.+.+..||..|+|+|..|
T Consensus       179 t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d  207 (228)
T d1k1aa_         179 SALHSASGRGLLPLVRTLVRSGADSSLKN  207 (228)
T ss_dssp             BHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             chHHHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence            36889999999999999999999999765