Psyllid ID: psy13624

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------
Protein Sequence
MISEAHITHLNNEIAKLKTQVQQVIGENETLKAALNARNSATHHQPPETEPVSDSSWCSPQRPASMYNVTVNAQSTTTRMPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTSTVRLQAECAQLEGSAERVRSCAYNMAKANKQLLTQFQ
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MISEAHITHLNNEIAKLKTQVQQVIGENETLKAALNArnsathhqppetepvsdsswcspqrpasmynvtvnaqstttrmpqseevVRRTDQVTKRIQELAAHMrssdkchsfvphAERIRIAVSELsaifpqntnnDLIRHALRSLNTSTVRLQAECAQLEGSAERVRSCAYNMAKANKQLLTQFQ
Flexible Loop (DISEMBL)
MISEAHITHLNNEIAKLKTQVQQVIGENETLKAALNARNSAthhqppetepvsdssWCSPQRPASMYNVTVNAqstttrmpqseevvrrtDQVTKRIQELAAhmrssdkchsfVPHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTSTVRLQAECAQLEGSAERVRSCAYNMAKANKQLLTQFQ
Low Complexity Region (SEG)
MISEAHITHLNNEIAKLKTQVQQVIGENETLKAALNARNSATHHQPPETEPVSDSSWCSPQRPASMYNVTVNAQSTTTRMPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTSTVRLQAECAQLEGSAERVRSCAYNMAKANKQLLTQFQ
Disordered region (IsUnstruct)
*************************************************************************************************************CHSFVPHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTSTVRLQAECAQLE*****VRSCAY**************
Disordered Region (DISOPRED)
***********N************************************************************************EVVRRTDQVTKRIQELAA*************HAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTSTVRLQAECAQLEGSAERVRSCAYNMAKANKQLLTQFQ
Disordered Region (DISEMBL)
MISEAHITHLNNEIAKLKTQVQQVIGENETLKAALN***********************PQRPASMYNVTVNAQ******************VTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTSTVRLQAECAQLEGSAERVRSCAYNMAKANKQLLTQFQ
Disordered Region (DISPRO)
**SEAHITHLNNEIAKLKTQVQQVIGENETLKAALN*****************************************TRMPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTSTVRLQAECAQLEGSAERVRSCAYNMAKANKQLLTQFQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MISEAHxxxxxxxxxxxxxxxxxxxxxxxxxxxxLNARNSATHHQPPETEPVSDSSWCSPQRPASMYNVTVNAQSTTTRMPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTSTVRLQAECAQLEGSAERVRSCAYNMAKANKQLLTQFQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	187	2.2.26 [Sep-21-2011]
Q14161	759	ARF GTPase-activating pro	no	N/A	0.545	0.134	0.415	1e-18
Q9JLQ2	708	ARF GTPase-activating pro	yes	N/A	0.545	0.144	0.415	4e-18
Q9Z272	770	ARF GTPase-activating pro	no	N/A	0.545	0.132	0.398	2e-15
Q9Y2X7	761	ARF GTPase-activating pro	no	N/A	0.545	0.134	0.398	2e-15
Q68FF6	770	ARF GTPase-activating pro	no	N/A	0.545	0.132	0.398	2e-15

>sp|Q14161|GIT2_HUMAN ARF GTPase-activating protein GIT2 OS=Homo sapiens GN=GIT2 PE=1 SV=2

 Score = 92.8 bits (229), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 81/118 (68%), Gaps = 16/118 (13%)

Query: 80  MPQSEEVVRRTDQVTKRIQELAAHMRSS--DKCHSFVPHAERIRIAVSELSAIFPQNTNN 137
           +P +E+V+R+T+Q+TK IQEL   +R++  +K  S++P +ERI +AV+E++A+FP+   +
Sbjct: 637 LPSTEDVIRKTEQITKNIQEL---LRAAQENKHDSYIPCSERIHVAVTEMAALFPKKPKS 693

Query: 138 DLIRHALRSLNTSTVRLQAECAQ-LEGS----------AERVRSCAYNMAKANKQLLT 184
           D++R +LR L +S  RLQ+EC + L G            ++V  CAY++AKA KQL+T
Sbjct: 694 DMVRTSLRLLTSSAYRLQSECKKTLPGDPGSPTDVQLVTQQVIQCAYDIAKAAKQLVT 751

GTPase-activating protein for the ADP ribosylation factor family.
Homo sapiens (taxid: 9606)

>sp|Q9JLQ2|GIT2_MOUSE ARF GTPase-activating protein GIT2 OS=Mus musculus GN=Git2 PE=1 SV=2

 Score = 91.3 bits (225), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 81/118 (68%), Gaps = 16/118 (13%)

Query: 80  MPQSEEVVRRTDQVTKRIQELAAHMRSS--DKCHSFVPHAERIRIAVSELSAIFPQNTNN 137
           +P +E+V+R+T+Q+TK IQEL   +R++  +K  S++P +ERI +AV+E++A+FP+   +
Sbjct: 586 LPSTEDVIRKTEQITKNIQEL---LRAAQENKHDSYIPCSERIHVAVTEMAALFPKKPKS 642

Query: 138 DLIRHALRSLNTSTVRLQAECAQ-LEGSA----------ERVRSCAYNMAKANKQLLT 184
           D +R +LR L +S  RLQ+EC + L G +          ++V  CAY++AKA KQL+T
Sbjct: 643 DTVRTSLRLLTSSAYRLQSECRKALPGDSSLPTDVQLVTQQVIQCAYDIAKAAKQLVT 700

GTPase-activating protein for the ADP ribosylation factor family.

Mus musculus (taxid: 10090)

>sp|Q9Z272|GIT1_RAT ARF GTPase-activating protein GIT1 OS=Rattus norvegicus GN=Git1 PE=1 SV=1

 Score = 82.0 bits (201), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 75/118 (63%), Gaps = 16/118 (13%)

Query: 80  MPQSEEVVRRTDQVTKRIQELAAHMRSSD--KCHSFVPHAERIRIAVSELSAIFPQNTNN 137
           +P +E+V+ +T+QVTK IQEL   +R++   K  SFVP +E+I +AV+E++++FP+    
Sbjct: 648 LPSTEDVILKTEQVTKNIQEL---LRAAQEFKHDSFVPCSEKIHLAVTEMASLFPKRPAL 704

Query: 138 DLIRHALRSLNTSTVRLQAEC-----------AQLEGSAERVRSCAYNMAKANKQLLT 184
           + +R +LR LN S  RLQ+EC              +   ++V  CAY++AKA KQL+T
Sbjct: 705 EPVRSSLRLLNASAYRLQSECRKTVPPEPGAPVDFQLLTQQVIQCAYDIAKAAKQLVT 762

GTPase-activating protein for the ADP ribosylation factor family. May serve as a scaffold to bring together molecules to form signaling modules controlling vesicle trafficking, adhesion and cytoskeletal organization. Increases the speed of cell migration, as well as the size and rate of formation of protrusions, possibly by targeting PAK1 to adhesions and the leading edge of lamellipodia. Sequesters inactive non-tyrosine-phosphorylated paxillin in cytoplasmic complexes.

Rattus norvegicus (taxid: 10116)

>sp|Q9Y2X7|GIT1_HUMAN ARF GTPase-activating protein GIT1 OS=Homo sapiens GN=GIT1 PE=1 SV=2

 Score = 82.0 bits (201), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 75/118 (63%), Gaps = 16/118 (13%)

Query: 80  MPQSEEVVRRTDQVTKRIQELAAHMRSSD--KCHSFVPHAERIRIAVSELSAIFPQNTNN 137
           +P +E+V+ +T+QVTK IQEL   +R++   K  SFVP +E+I +AV+E++++FP+    
Sbjct: 639 LPSTEDVILKTEQVTKNIQEL---LRAAQEFKHDSFVPCSEKIHLAVTEMASLFPKRPAL 695

Query: 138 DLIRHALRSLNTSTVRLQAEC-----------AQLEGSAERVRSCAYNMAKANKQLLT 184
           + +R +LR LN S  RLQ+EC              +   ++V  CAY++AKA KQL+T
Sbjct: 696 EPVRSSLRLLNASAYRLQSECRKTVPPEPGAPVDFQLLTQQVIQCAYDIAKAAKQLVT 753

GTPase-activating protein for the ADP ribosylation factor family. May serve as a scaffold to bring together molecules to form signaling modules controlling vesicle trafficking, adhesion and cytoskeletal organization. Increases the speed of cell migration, as well as the size and rate of formation of protrusions, possibly by targeting PAK1 to adhesions and the leading edge of lamellipodia. Sequesters inactive non-tyrosine-phosphorylated paxillin in cytoplasmic complexes.

Homo sapiens (taxid: 9606)

>sp|Q68FF6|GIT1_MOUSE ARF GTPase-activating protein GIT1 OS=Mus musculus GN=Git1 PE=1 SV=1

 Score = 82.0 bits (201), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 75/118 (63%), Gaps = 16/118 (13%)

Query: 80  MPQSEEVVRRTDQVTKRIQELAAHMRSSD--KCHSFVPHAERIRIAVSELSAIFPQNTNN 137
           +P +E+V+ +T+QVTK IQEL   +R++   K  SFVP +E+I +AV+E++++FP+    
Sbjct: 648 LPSTEDVILKTEQVTKNIQEL---LRAAQEFKHDSFVPCSEKIHLAVTEMASLFPKRPAL 704

Query: 138 DLIRHALRSLNTSTVRLQAEC-----------AQLEGSAERVRSCAYNMAKANKQLLT 184
           + +R +LR LN S  RLQ+EC              +   ++V  CAY++AKA KQL+T
Sbjct: 705 EPVRSSLRLLNASAYRLQSECRKTVPPEPGAPVDFQLLTQQVIQCAYDIAKAAKQLVT 762

GTPase-activating protein for the ADP ribosylation factor family. May serve as a scaffold to bring together molecules to form signaling modules controlling vesicle trafficking, adhesion and cytoskeletal organization. Increases the speed of cell migration, as well as the size and rate of formation of protrusions, possibly by targeting PAK1 to adhesions and the leading edge of lamellipodia. Sequesters inactive non-tyrosine-phosphorylated paxillin in cytoplasmic complexes.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
328718235	622	PREDICTED: ARF GTPase-activating protein	0.941	0.282	0.453	4e-34
332025678	319	ARF GTPase-activating protein GIT2 [Acro	0.994	0.583	0.417	3e-31
322795216	591	hypothetical protein SINV_13231 [Solenop	0.994	0.314	0.419	5e-30
350421162	674	PREDICTED: ARF GTPase-activating protein	0.989	0.274	0.404	5e-30
340713915	674	PREDICTED: LOW QUALITY PROTEIN: ARF GTPa	0.989	0.274	0.404	5e-30
328788551	674	PREDICTED: ARF GTPase-activating protein	0.994	0.275	0.388	1e-29
380025685	678	PREDICTED: ARF GTPase-activating protein	0.994	0.274	0.391	2e-29
383863605	676	PREDICTED: ARF GTPase-activating protein	0.994	0.275	0.389	3e-29
307178093	675	ARF GTPase-activating protein GIT1 [Camp	0.994	0.275	0.406	3e-29
345479874	642	PREDICTED: ARF GTPase-activating protein	0.994	0.289	0.382	8e-27

>gi|328718235|ref|XP_001944772.2| PREDICTED: ARF GTPase-activating protein GIT2-like [Acyrthosiphon pisum]

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 88/194 (45%), Positives = 117/194 (60%), Gaps = 18/194 (9%)

Query: 3   SEAHITHLNNEIAKLKTQVQQVIGENETLKAALNARNSATHHQPPETEPVSDSSWCS--- 59
           SEA I+ L +EI  LK +V+++  EN  LK  +         QP     V + + C    
Sbjct: 437 SEAKISKLISEIDLLKKKVEEITKENVELKCEM-----LRQKQPA---LVINENECGDVK 488

Query: 60  -PQRPASMYNVTVNAQSTTTR------MPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHS 112
            P RP SMY      +    R      +P  E+VVR T QVTK IQEL  ++RSS+ C +
Sbjct: 489 QPIRPVSMYETREGIKCDMIRNMQISNLPSYEDVVRHTAQVTKGIQELWTNIRSSEACKA 548

Query: 113 FVPHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTSTVRLQAECAQLEGSAERVRSCA 172
           FVP  E+IR AV EL+AIFP + N+D+++ AL SLNT+T +LQ ECA LE   ERVR C+
Sbjct: 549 FVPGTEKIRTAVVELTAIFPHSINDDVLKSALWSLNTNTTQLQLECACLEAGVERVRDCS 608

Query: 173 YNMAKANKQLLTQF 186
           +N+AKA KQLLT+F
Sbjct: 609 FNIAKATKQLLTRF 622

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025678|gb|EGI65838.1| ARF GTPase-activating protein GIT2 [Acromyrmex echinatior]

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/235 (41%), Positives = 128/235 (54%), Gaps = 49/235 (20%)

Query: 2   ISEAHITHLNNEIAKLKTQVQQVIGENETLKAALNARNSA--------THHQPPETEPVS 53
           +SE+ +  L  ++  L+T ++Q+  EN  LK  L  + S+           Q PE EPV 
Sbjct: 11  LSESTVRDLREQVHTLQTAIEQLTQENNELKHMLQIKGSSDGNMNGHVVGEQEPELEPVH 70

Query: 54  D---SSWCSPQRPASMY----NVTVNAQSTTT------------------------RMPQ 82
           D   S+    QRPASMY     +   A STT                          +P 
Sbjct: 71  DIKTSTIRGNQRPASMYETREGLRKPAWSTTICQTKRDTEVLSRNNTQSLWECGLPNLPP 130

Query: 83  SEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDLIRH 142
           SEEV RRT+QVT+RIQEL   M+   +  +FVP AERIR+AV+EL+AIFPQN   + IR 
Sbjct: 131 SEEVTRRTEQVTRRIQELWMAMQDPSQREAFVPCAERIRVAVAELTAIFPQNPIEENIRS 190

Query: 143 ALRSLNTSTVRLQAECAQLE---GSAE-------RVRSCAYNMAKANKQLLTQFQ 187
           ALR LN +T RLQAEC+ L+     AE       +VRSCAY++AKA K L+TQFQ
Sbjct: 191 ALRQLNGNTGRLQAECSGLQRCTSDAEHMDRCLQQVRSCAYDIAKATKLLVTQFQ 245

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322795216|gb|EFZ18038.1| hypothetical protein SINV_13231 [Solenopsis invicta]

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 99/236 (41%), Positives = 128/236 (54%), Gaps = 50/236 (21%)

Query: 2   ISEAHITHLNNEIAKLKTQVQQVIGENETLKAALNARNSATHH--------QPPETEPVS 53
           +SE+ +  L  +I  L+T  +Q+  EN  LK  L  + S   +        Q PE EPV 
Sbjct: 356 LSESTVRDLREQIHTLQTANEQLAQENNKLKHMLQIKASGDGNMNGHVGGEQEPELEPVH 415

Query: 54  D---SSWCSPQRPASMY------------NVTV-------------NAQS----TTTRMP 81
           D   S+    QRPASMY            + T+             N QS        +P
Sbjct: 416 DIKTSTIRGNQRPASMYETREGLRKPASWSTTICQTKRDIEPLSRNNTQSLWECGAPNLP 475

Query: 82  QSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDLIR 141
            SEEV RRT+QVT+RIQEL   M+   +  +FVP AERIR+AV+EL+AIFPQN   + IR
Sbjct: 476 PSEEVTRRTEQVTRRIQELWMAMQDPSQREAFVPCAERIRVAVAELTAIFPQNPIEENIR 535

Query: 142 HALRSLNTSTVRLQAECAQLE---GSAE-------RVRSCAYNMAKANKQLLTQFQ 187
            ALR LN +T RLQAEC+ L+     AE       +VRSCAY++AKA K L+TQFQ
Sbjct: 536 SALRQLNGNTGRLQAECSGLQRCTSDAEHMDRCLQQVRSCAYDIAKATKLLVTQFQ 591

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350421162|ref|XP_003492755.1| PREDICTED: ARF GTPase-activating protein GIT2-like [Bombus impatiens]

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 95/235 (40%), Positives = 126/235 (53%), Gaps = 50/235 (21%)

Query: 2   ISEAHITHLNNEIAKLKTQVQQVIGENETLKAALNARNS--------ATHHQPPETEPVS 53
           +SE+ I  L  +I  L++ V+Q+  EN  LK  ++ + S         +  Q PE EPV 
Sbjct: 440 LSESTIKDLREQIRTLQSTVEQLTHENNELKQMIHVKESTDGVVNGHVSGEQEPELEPVL 499

Query: 54  DSSWC---SPQRPASMYNV-----TVNAQSTTT------------------------RMP 81
           D       S QRPASMY         N+ ST+                          +P
Sbjct: 500 DIKTSLNRSNQRPASMYETREGLRKPNSWSTSICQAKRDSETISRNNTQSLWECDAPNLP 559

Query: 82  QSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDLIR 141
            SEEV RRT+QVT+RIQEL   M+   +  +FVP AERIR+AV+EL+AIFPQN   + IR
Sbjct: 560 PSEEVTRRTEQVTRRIQELWMAMQDPKQREAFVPCAERIRVAVAELTAIFPQNPIEENIR 619

Query: 142 HALRSLNTSTVRLQAECAQL----------EGSAERVRSCAYNMAKANKQLLTQF 186
            ALR LN +T RLQAEC+ L          +   ++VRSCAY++AKA K L+TQF
Sbjct: 620 SALRQLNGNTGRLQAECSGLQRCTSDIEHMDRCLQQVRSCAYDIAKATKLLVTQF 674

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713915|ref|XP_003395479.1| PREDICTED: LOW QUALITY PROTEIN: ARF GTPase-activating protein GIT1-like [Bombus terrestris]

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 95/235 (40%), Positives = 126/235 (53%), Gaps = 50/235 (21%)

Query: 2   ISEAHITHLNNEIAKLKTQVQQVIGENETLKAALNARNS--------ATHHQPPETEPVS 53
           +SE+ I  L  +I  L++ V+Q+  EN  LK  ++ + S         +  Q PE EPV 
Sbjct: 440 LSESTIKDLREQIRTLQSTVEQLTHENNELKQMIHVKESTDGVINGHVSGEQEPELEPVL 499

Query: 54  DSSWC---SPQRPASMYNV-----TVNAQSTTT------------------------RMP 81
           D       S QRPASMY         N+ ST+                          +P
Sbjct: 500 DIKTSLNRSNQRPASMYETREGLRKPNSWSTSICQAKRDSETISRNNTQSLWECGAPNLP 559

Query: 82  QSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDLIR 141
            SEEV RRT+QVT+RIQEL   M+   +  +FVP AERIR+AV+EL+AIFPQN   + IR
Sbjct: 560 PSEEVTRRTEQVTRRIQELWMAMQDPKQREAFVPCAERIRVAVAELTAIFPQNPIEENIR 619

Query: 142 HALRSLNTSTVRLQAECAQL----------EGSAERVRSCAYNMAKANKQLLTQF 186
            ALR LN +T RLQAEC+ L          +   ++VRSCAY++AKA K L+TQF
Sbjct: 620 SALRQLNGNTGRLQAECSGLQRCTSDIEHMDRCLQQVRSCAYDIAKATKLLVTQF 674

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328788551|ref|XP_395358.4| PREDICTED: ARF GTPase-activating protein GIT2-like isoform 1 [Apis mellifera]

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/234 (38%), Positives = 129/234 (55%), Gaps = 48/234 (20%)

Query: 2   ISEAHITHLNNEIAKLKTQVQQVIGENETLKAALNARNSA--------THHQPPETEPVS 53
           +SE+ +  L  +I+ L+  ++Q+  EN  LK  ++ + S         +  Q PE EPV 
Sbjct: 440 LSESTVRDLREQISTLQNTIEQLTHENNELKQMIHLKGSTDAVINGHISGEQEPELEPVL 499

Query: 54  D---SSWCSPQRPASMY--------------NVTVNAQSTTTR-------------MPQS 83
           D   S   + QRPASMY              +++     T +R             +P S
Sbjct: 500 DIKTSLSRTNQRPASMYETREGLRKPNSWSTSISKRDSETVSRGNTQSLWDYGAPNLPSS 559

Query: 84  EEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDLIRHA 143
           EEV RRT+QVTKRI+EL   M++  +  +FVP AERIR+AV+EL+AIFPQN   + +R A
Sbjct: 560 EEVTRRTEQVTKRIRELWMAMQNPKQREAFVPCAERIRVAVAELTAIFPQNPIEENVRSA 619

Query: 144 LRSLNTSTVRLQAECAQL----------EGSAERVRSCAYNMAKANKQLLTQFQ 187
           LR LN +T RLQAEC+ L          +   ++VRSC Y++AKA K L+TQFQ
Sbjct: 620 LRQLNGNTGRLQAECSGLQRCTSDTEHMDRCLQQVRSCVYDIAKATKLLVTQFQ 673

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380025685|ref|XP_003696599.1| PREDICTED: ARF GTPase-activating protein GIT1-like [Apis florea]

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/235 (39%), Positives = 127/235 (54%), Gaps = 49/235 (20%)

Query: 2   ISEAHITHLNNEIAKLKTQVQQVIGENETLKAALNARNS-------ATHHQPPETEPVSD 54
           +SE+ +  L  +I+ L+  ++Q+  EN  LK  ++ + S        +  Q PE EPV D
Sbjct: 443 LSESTVRDLREQISTLQNTIEQLTHENNELKQMIHLKGSDAVINGHVSGEQEPELEPVLD 502

Query: 55  ---SSWCSPQRPASMYNV-----TVNAQSTTT------------------------RMPQ 82
              S   + QRPASMY         N+ ST+                          +P 
Sbjct: 503 IKTSLSRTNQRPASMYETREGLRKPNSWSTSICQSKRDSETVSRGNTQSLWDYGAPNLPS 562

Query: 83  SEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDLIRH 142
           SEEV RRT+QVTKRI+EL   M+   +  +FVP AERIR+AV+EL+AIFPQN   + +R 
Sbjct: 563 SEEVTRRTEQVTKRIRELWMAMQDPKQREAFVPCAERIRVAVAELTAIFPQNPIEENVRS 622

Query: 143 ALRSLNTSTVRLQAECAQL----------EGSAERVRSCAYNMAKANKQLLTQFQ 187
           ALR LN +T RLQAEC+ L          +   ++VRSC Y++AKA K L+TQFQ
Sbjct: 623 ALRQLNGNTGRLQAECSGLQRCTSDTEHMDRCLQQVRSCVYDIAKATKLLVTQFQ 677

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863605|ref|XP_003707270.1| PREDICTED: ARF GTPase-activating protein GIT2-like [Megachile rotundata]

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/236 (38%), Positives = 124/236 (52%), Gaps = 50/236 (21%)

Query: 2   ISEAHITHLNNEIAKLKTQVQQVIGENETLKAALNARNS--------ATHHQPPETEPVS 53
           +SE+ +  L  ++  L+  ++Q+  EN  LK  ++ + S            Q PE EPV 
Sbjct: 440 LSESTVRDLREQMHTLQNTIEQLTRENNELKQMIHMKESTDSIVNGHVGGEQEPELEPVL 499

Query: 54  D---SSWCSPQRPASMYNVTVNAQSTTTR-----------------------------MP 81
           D   S   S QRPASMY      +  T+                              +P
Sbjct: 500 DIKTSLTRSNQRPASMYETREGLRKPTSWSTSICQSKRDPETISRNNTQSLWECGAPTLP 559

Query: 82  QSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDLIR 141
            SEEV RRT+QVT+RIQEL   M+   +  +FVP AERIR+AV+EL+AIFPQN   + IR
Sbjct: 560 PSEEVTRRTEQVTRRIQELWMAMQDPKQREAFVPCAERIRVAVAELTAIFPQNPIEENIR 619

Query: 142 HALRSLNTSTVRLQAECAQL----------EGSAERVRSCAYNMAKANKQLLTQFQ 187
            ALR LN +T RLQAEC+ L          +   ++VRSCAY++AKA K L+TQFQ
Sbjct: 620 SALRQLNGNTGRLQAECSGLQRYTSDIEHMDRCLQQVRSCAYDIAKATKLLVTQFQ 675

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307178093|gb|EFN66920.1| ARF GTPase-activating protein GIT1 [Camponotus floridanus]

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/236 (40%), Positives = 127/236 (53%), Gaps = 50/236 (21%)

Query: 2   ISEAHITHLNNEIAKLKTQVQQVIGENETLKAALNARNS--------ATHHQPPETEPVS 53
           +SE+ +  L  +I  L+  ++Q+  EN  LK  L  + S            Q PE EPV 
Sbjct: 439 LSESTVRDLREQIHTLQITIEQLTQENSELKRMLQVKGSNDDNINGHVGGEQEPELEPVH 498

Query: 54  D---SSWCSPQRPASMY------------NVTV-------------NAQS----TTTRMP 81
           D   S+    QRPASMY            + T+             N QS        +P
Sbjct: 499 DIKTSTIRGNQRPASMYETREGLRKPASWSTTICQTKRDTEVLSRNNTQSLWEYGAPNLP 558

Query: 82  QSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDLIR 141
            +EEV RRT+QVT+RIQEL   M+   +  +FVP AERIR+AV+EL+AIFPQN   + I+
Sbjct: 559 PNEEVNRRTEQVTRRIQELWMAMQDPSQREAFVPCAERIRVAVAELTAIFPQNPLEENIK 618

Query: 142 HALRSLNTSTVRLQAECAQLE---GSAE-------RVRSCAYNMAKANKQLLTQFQ 187
            ALR LN +T RLQAEC+ L+     AE       +VRSCAY++AKA K L+TQFQ
Sbjct: 619 SALRQLNGNTGRLQAECSGLQRCTSDAEHMDRCLQQVRSCAYDIAKATKLLVTQFQ 674

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345479874|ref|XP_001603961.2| PREDICTED: ARF GTPase-activating protein GIT2-like [Nasonia vitripennis]

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 91/238 (38%), Positives = 117/238 (49%), Gaps = 52/238 (21%)

Query: 2   ISEAHITHLNNEIAKLKTQVQQVIGENETLKAALNAR----------NSATHHQPPETEP 51
           +SE  +  L  E+ +L   ++ +  EN  LK  +             N       PE EP
Sbjct: 403 LSETTMRDLREEVRRLHATIEHLTQENRELKNTIQVTKIKAQPERIINGHIGEHDPEPEP 462

Query: 52  VSD-----SSWCSPQRPASMYN--------------------------VTVNAQSTTTR- 79
           V D     +   + QRPASMY                            T       TR 
Sbjct: 463 VLDIKISTTPTKASQRPASMYETREGLRKPPSFMNQTKRETEGLPRPCTTQGLWECGTRT 522

Query: 80  MPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDL 139
           +P SEEV RRT+QVT+RIQEL   M+      +FVP AERIR+AV+EL+AIFPQN  +D 
Sbjct: 523 LPPSEEVTRRTEQVTRRIQELWMAMQDPAHRETFVPCAERIRVAVAELAAIFPQNPVDDN 582

Query: 140 IRHALRSLNTSTVRLQAECAQL----------EGSAERVRSCAYNMAKANKQLLTQFQ 187
           IR ALR LN +T RLQAEC  L          +   ++VRS AY++AKA K L+TQFQ
Sbjct: 583 IRSALRQLNGNTGRLQAECTALQRCTSDPDHMDRCLQQVRSSAYDIAKATKLLVTQFQ 640

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
ZFIN|ZDB-GENE-060526-267	750	git2a "G protein-coupled recep	0.556	0.138	0.439	4.3e-21
UNIPROTKB|F8W7V0	649	GIT2 "ARF GTPase-activating pr	0.556	0.160	0.413	2.3e-17
UNIPROTKB|F8WAK2	681	GIT2 "ARF GTPase-activating pr	0.556	0.152	0.413	2.5e-17
UNIPROTKB|F8VXI9	708	GIT2 "ARF GTPase-activating pr	0.556	0.146	0.413	2.7e-17
UNIPROTKB|F1RIT6	729	GIT2 "Uncharacterized protein"	0.556	0.142	0.413	2.8e-17
UNIPROTKB|E1BI41	759	GIT2 "Uncharacterized protein"	0.556	0.137	0.413	3e-17
UNIPROTKB|Q14161	759	GIT2 "ARF GTPase-activating pr	0.556	0.137	0.413	3e-17
MGI|MGI:1347053	708	Git2 "G protein-coupled recept	0.556	0.146	0.413	4.4e-17
ZFIN|ZDB-GENE-070112-2192	736	git2b "G protein-coupled recep	0.582	0.148	0.401	5.4e-17
UNIPROTKB|E2R8Q3	759	GIT2 "Uncharacterized protein"	0.556	0.137	0.413	6.3e-17

ZFIN|ZDB-GENE-060526-267 git2a "G protein-coupled receptor kinase interactor 2a" [Danio rerio (taxid:7955)]

 Score = 227 (85.0 bits), Expect = 4.3e-21, Sum P(2) = 4.3e-21
 Identities = 51/116 (43%), Positives = 77/116 (66%)

Query:    80 MPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDL 139
             +P +E+V+R+T+Q+TK IQEL       +K  SFVP AERI +AV+E++A+FP+   ++ 
Sbjct:   629 LPSTEDVIRKTEQITKNIQELL-RAAQENKHESFVPCAERIHVAVNEMAALFPKRPRSET 687

Query:   140 IRHALRSLNTSTVRLQAECAQ---LEGS--------AERVRSCAYNMAKANKQLLT 184
             +R++LR L +S  RLQ EC +   LE S         ++V  CAY++AKA KQL+T
Sbjct:   688 VRNSLRLLTSSANRLQTECKKASPLESSQASDMQLVTQQVIQCAYDIAKAAKQLVT 743

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0022604 "regulation of cell morphogenesis" evidence=IMP

GO:0042074 "cell migration involved in gastrulation" evidence=IMP

UNIPROTKB|F8W7V0 GIT2 "ARF GTPase-activating protein GIT2" [Homo sapiens (taxid:9606)]

 Score = 222 (83.2 bits), Expect = 2.3e-17, P = 2.3e-17
 Identities = 48/116 (41%), Positives = 77/116 (66%)

Query:    80 MPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDL 139
             +P +E+V+R+T+Q+TK IQEL       +K  S++P +ERI +AV+E++A+FP+   +D+
Sbjct:   527 LPSTEDVIRKTEQITKNIQELL-RAAQENKHDSYIPCSERIHVAVTEMAALFPKKPKSDM 585

Query:   140 IRHALRSLNTSTVRLQAECAQ-LEGS----------AERVRSCAYNMAKANKQLLT 184
             +R +LR L +S  RLQ+EC + L G            ++V  CAY++AKA KQL+T
Sbjct:   586 VRTSLRLLTSSAYRLQSECKKTLPGDPGSPTDVQLVTQQVIQCAYDIAKAAKQLVT 641

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

UNIPROTKB|F8WAK2 GIT2 "ARF GTPase-activating protein GIT2" [Homo sapiens (taxid:9606)]

 Score = 222 (83.2 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 48/116 (41%), Positives = 77/116 (66%)

Query:    80 MPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDL 139
             +P +E+V+R+T+Q+TK IQEL       +K  S++P +ERI +AV+E++A+FP+   +D+
Sbjct:   559 LPSTEDVIRKTEQITKNIQELL-RAAQENKHDSYIPCSERIHVAVTEMAALFPKKPKSDM 617

Query:   140 IRHALRSLNTSTVRLQAECAQ-LEGS----------AERVRSCAYNMAKANKQLLT 184
             +R +LR L +S  RLQ+EC + L G            ++V  CAY++AKA KQL+T
Sbjct:   618 VRTSLRLLTSSAYRLQSECKKTLPGDPGSPTDVQLVTQQVIQCAYDIAKAAKQLVT 673

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

UNIPROTKB|F8VXI9 GIT2 "ARF GTPase-activating protein GIT2" [Homo sapiens (taxid:9606)]

 Score = 222 (83.2 bits), Expect = 2.7e-17, P = 2.7e-17
 Identities = 48/116 (41%), Positives = 77/116 (66%)

Query:    80 MPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDL 139
             +P +E+V+R+T+Q+TK IQEL       +K  S++P +ERI +AV+E++A+FP+   +D+
Sbjct:   586 LPSTEDVIRKTEQITKNIQELL-RAAQENKHDSYIPCSERIHVAVTEMAALFPKKPKSDM 644

Query:   140 IRHALRSLNTSTVRLQAECAQ-LEGS----------AERVRSCAYNMAKANKQLLT 184
             +R +LR L +S  RLQ+EC + L G            ++V  CAY++AKA KQL+T
Sbjct:   645 VRTSLRLLTSSAYRLQSECKKTLPGDPGSPTDVQLVTQQVIQCAYDIAKAAKQLVT 700

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

UNIPROTKB|F1RIT6 GIT2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 222 (83.2 bits), Expect = 2.8e-17, P = 2.8e-17
 Identities = 48/116 (41%), Positives = 77/116 (66%)

Query:    80 MPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDL 139
             +P +E+V+R+T+Q+TK IQEL       +K  S++P +ERI +AV+E++A+FP+   +D+
Sbjct:   607 LPSTEDVIRKTEQITKNIQELL-RAAQENKHDSYIPCSERIHVAVTEMAALFPKKPKSDM 665

Query:   140 IRHALRSLNTSTVRLQAECAQ-LEGS----------AERVRSCAYNMAKANKQLLT 184
             +R +LR L +S  RLQ+EC + L G            ++V  CAY++AKA KQL+T
Sbjct:   666 VRTSLRLLTSSAYRLQSECKKTLPGDPGPPTDIQLVTQQVIQCAYDIAKAAKQLVT 721

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

UNIPROTKB|E1BI41 GIT2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 222 (83.2 bits), Expect = 3.0e-17, P = 3.0e-17
 Identities = 48/116 (41%), Positives = 77/116 (66%)

Query:    80 MPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDL 139
             +P +E+V+R+T+Q+TK IQEL       +K  S++P +ERI +AV+E++A+FP+   +D+
Sbjct:   637 LPSTEDVIRKTEQITKNIQELL-RAAQENKHDSYIPCSERIHVAVTEMAALFPKKPKSDM 695

Query:   140 IRHALRSLNTSTVRLQAECAQ-LEGS----------AERVRSCAYNMAKANKQLLT 184
             +R +LR L +S  RLQ+EC + L G            ++V  CAY++AKA KQL+T
Sbjct:   696 VRTSLRLLTSSAYRLQSECKKTLPGDPGPPTDIQLVTQQVIQCAYDIAKAAKQLVT 751

GO:0005654 "nucleoplasm" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

UNIPROTKB|Q14161 GIT2 "ARF GTPase-activating protein GIT2" [Homo sapiens (taxid:9606)]

 Score = 222 (83.2 bits), Expect = 3.0e-17, P = 3.0e-17
 Identities = 48/116 (41%), Positives = 77/116 (66%)

Query:    80 MPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDL 139
             +P +E+V+R+T+Q+TK IQEL       +K  S++P +ERI +AV+E++A+FP+   +D+
Sbjct:   637 LPSTEDVIRKTEQITKNIQELL-RAAQENKHDSYIPCSERIHVAVTEMAALFPKKPKSDM 695

Query:   140 IRHALRSLNTSTVRLQAECAQ-LEGS----------AERVRSCAYNMAKANKQLLT 184
             +R +LR L +S  RLQ+EC + L G            ++V  CAY++AKA KQL+T
Sbjct:   696 VRTSLRLLTSSAYRLQSECKKTLPGDPGSPTDVQLVTQQVIQCAYDIAKAAKQLVT 751

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IDA

GO:0008277 "regulation of G-protein coupled receptor protein signaling pathway" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1347053 Git2 "G protein-coupled receptor kinase-interactor 2" [Mus musculus (taxid:10090)]

 Score = 220 (82.5 bits), Expect = 4.4e-17, P = 4.4e-17
 Identities = 48/116 (41%), Positives = 77/116 (66%)

Query:    80 MPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDL 139
             +P +E+V+R+T+Q+TK IQEL       +K  S++P +ERI +AV+E++A+FP+   +D 
Sbjct:   586 LPSTEDVIRKTEQITKNIQELL-RAAQENKHDSYIPCSERIHVAVTEMAALFPKKPKSDT 644

Query:   140 IRHALRSLNTSTVRLQAECAQ-LEGSA----------ERVRSCAYNMAKANKQLLT 184
             +R +LR L +S  RLQ+EC + L G +          ++V  CAY++AKA KQL+T
Sbjct:   645 VRTSLRLLTSSAYRLQSECRKALPGDSSLPTDVQLVTQQVIQCAYDIAKAAKQLVT 700

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005654 "nucleoplasm" evidence=ISO

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

ZFIN|ZDB-GENE-070112-2192 git2b "G protein-coupled receptor kinase interactor 2b" [Danio rerio (taxid:7955)]

 Score = 203 (76.5 bits), Expect = 5.4e-17, Sum P(2) = 5.4e-17
 Identities = 45/112 (40%), Positives = 75/112 (66%)

Query:    74 QSTTTRMPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQ 133
             +S +T +P +E+V+ +T+ +TK IQEL       +K  SFV  +ERI +AV+E++ +FP+
Sbjct:   620 ESDST-LPCTEDVISKTELITKNIQELL-RAAQENKHASFVTCSERILLAVTEMATLFPK 677

Query:   134 NTNNDLIRHALRSLNTSTVRLQAECAQLEG-SAERVRSCAYNMAKANKQLLT 184
               +++ +R +LR L +S  RLQ EC +     +++V  CAY++AKA KQL+T
Sbjct:   678 RPSSETVRGSLRLLTSSASRLQGECQKATPHDSQQVIQCAYDIAKAAKQLVT 729

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E2R8Q3 GIT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 219 (82.2 bits), Expect = 6.3e-17, P = 6.3e-17
 Identities = 48/116 (41%), Positives = 76/116 (65%)

Query:    80 MPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDL 139
             +P +E+V+R+T+Q+TK IQEL       +K  S++P +ERI +AV+E++A+FP+   +D 
Sbjct:   637 LPSTEDVIRKTEQITKNIQELL-RAAQENKHDSYIPCSERIHVAVTEMAALFPKKPKSDT 695

Query:   140 IRHALRSLNTSTVRLQAECAQ-LEGS----------AERVRSCAYNMAKANKQLLT 184
             +R +LR L +S  RLQ+EC + L G            ++V  CAY++AKA KQL+T
Sbjct:   696 VRTSLRLLTSSAYRLQSECKKTLPGDPGPPTDIQLVTQQVIQCAYDIAKAAKQLVT 751

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	187
pfam12205	123	pfam12205, GIT1_C, G protein-coupled receptor kina	6e-21

>gnl|CDD|152640 pfam12205, GIT1_C, G protein-coupled receptor kinase-interacting protein 1 C term

 Score = 83.0 bits (205), Expect = 6e-21
 Identities = 52/118 (44%), Positives = 76/118 (64%), Gaps = 14/118 (11%)

Query: 80  MPQSEEVVRRTDQVTKRIQEL--AAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNN 137
           +P +E+V+R+T+Q+TK IQEL  AA      K  SFVP +E I  AV+E++A+FP+  N+
Sbjct: 8   LPSTEDVIRKTEQITKNIQELLRAAQ---EGKHESFVPCSENILTAVNEMAALFPERPNS 64

Query: 138 DLIRHALRSLNTSTVRLQAEC--AQLEGSA-------ERVRSCAYNMAKANKQLLTQF 186
           + +R++LR L +S  RLQ EC  A   G A       ++V  CAY++AKA KQL+T  
Sbjct: 65  ETVRNSLRLLTSSAERLQNECKKAVPPGIAVDMQLVTQQVIQCAYDIAKAAKQLVTIT 122

This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with pfam01412, pfam00023, pfam08518. GIT1 plays an important role in cell adhesion, motility, cytoskeletal remodeling and membrane trafficking. To perform this function, it localises p21-activated kinase (PAK) and PAK-interactive exchange factor to focal adhesions. Its activation is regulated by interaction between its paxillin-binding C terminal and the LD motifs of paxillin. The C terminal folds into a four helix bundle. Length = 123

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	187
PF12205	123	GIT1_C: G protein-coupled receptor kinase-interact	100.0
KOG0818|consensus	669		100.0
PF04728	56	LPP: Lipoprotein leucine-zipper; InterPro: IPR0068	93.86
PF03623	139	Focal_AT: Focal adhesion targeting region; InterPr	92.58
smart00307	200	ILWEQ I/LWEQ domain. Thought to possess an F-actin	92.19
smart00338	65	BRLZ basic region leucin zipper.	90.18
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	89.82
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	89.06
PRK15422	79	septal ring assembly protein ZapB; Provisional	89.0
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	88.09
PF12026	210	DUF3513: Domain of unknown function (DUF3513); Int	86.56
PRK00295	68	hypothetical protein; Provisional	84.46
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	83.76
PF05812	118	Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro:	83.22
PRK00736	68	hypothetical protein; Provisional	82.43
TIGR02209	85	ftsL_broad cell division protein FtsL. This model	81.65
PRK04406	75	hypothetical protein; Provisional	81.19
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	80.85
PHA03162	135	hypothetical protein; Provisional	80.58
PRK02793	72	phi X174 lysis protein; Provisional	80.34

>PF12205 GIT1_C: G protein-coupled receptor kinase-interacting protein 1 C term; InterPro: IPR022018 This domain family is found in eukaryotes, and is approximately 120 amino acids in length

Probab=100.00  E-value=1.1e-46  Score=297.17  Aligned_cols=110  Identities=47%  Similarity=0.768  Sum_probs=98.5

Q ss_pred             CCCCCChhhHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHHHHHHHHHhhcCCCCCchHHHHHHHHhhhhhHHHHH
Q psy13624         77 TTRMPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTSTVRLQA  156 (187)
Q Consensus        77 ~~~~P~~e~Vir~TE~vT~~IqeLl~aaq~~~~~~~fvpcae~I~~AV~el~alFP~~~~~e~vr~~L~~L~~~a~~Lq~  156 (187)
                      ++++||+||||||||+|||||||||+|||++++ ++|+||||+|++||++|++|||++|.+++||++|++|++++++||+
T Consensus         5 ~~~~p~~e~Vi~~TE~vTk~IqeLl~aAQ~~~~-~s~~pcae~I~~aV~~m~~LfP~~~~~e~vr~~L~~L~~~~~~Lq~   83 (123)
T PF12205_consen    5 DPNLPSTEDVIRRTEQVTKRIQELLRAAQEGRH-DSFAPCAERIRSAVTEMAALFPKDPRSETVRSSLRQLTSSAYRLQA   83 (123)
T ss_dssp             BSS-S-HHHHHHHHHHHHHHHHHHHHHHHTT-H-HHHHHHHHHHHHHHHHHHHTS-SSB--HHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc-ccchhHHHHHHHHHHHHHHhCCCccCChHHHHHHHHHHHHHHHHHH
Confidence            467999999999999999999999999999876 8999999999999999999999999999999999999999999999


Q ss_pred             Hhhhh---------HHhHHHHHHHHHHHHHHHHHhhhhcC
Q psy13624        157 ECAQL---------EGSAERVRSCAYNMAKANKQLLTQFQ  187 (187)
Q Consensus       157 eC~~~---------q~~t~qv~~cAYdIAKAaK~LvT~f~  187 (187)
                      ||+.+         +.+++|||+||||||||||+|||+|+
T Consensus        84 eC~~~~~~~~~~~~~~~t~qvi~~AYdIAKAaKqLvT~~~  123 (123)
T PF12205_consen   84 ECQKAQPEDDAVDIQLVTQQVIQCAYDIAKAAKQLVTIFT  123 (123)
T ss_dssp             HHHS---S--SS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            99876         45599999999999999999999995

The family is found in association with PF01412 from PFAM, PF00023 from PFAM, PF08518 from PFAM. GIT1 plays an important role in cell adhesion, motility, cytoskeletal remodeling and membrane trafficking. To perform this function, it localises p21-activated kinase (PAK) and PAK-interactive exchange factor to focal adhesions. Its activation is regulated by interaction between its paxillin-binding C-terminal and the LD motifs of paxillin. The C-terminal folds into a four helix bundle. ; PDB: 2JX0_A.

>KOG0818|consensus

Probab=100.00  E-value=1.2e-33  Score=264.02  Aligned_cols=178  Identities=31%  Similarity=0.425  Sum_probs=145.1

Q ss_pred             hHHHHHHHHHHHHHHHHhhhHHHHHHHhhc--------CCC----CCCCCCCC-------CCCCC------------CCC
Q psy13624          9 HLNNEIAKLKTQVQQVIGENETLKAALNAR--------NSA----THHQPPET-------EPVSD------------SSW   57 (187)
Q Consensus         9 ~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~~--------~~~----~~~~~~~~-------~p~~~------------~~~   57 (187)
                      .|..|+++|.+.++.|+.+|.+|++.+...        +.+    ...+....       +|++.            ...
T Consensus       434 t~~~q~~el~~~v~~l~~~n~~l~s~~~~~r~nl~~~kp~~~~~~~psP~~~~e~~~~~l~p~g~t~~~e~~~s~d~~~~  513 (669)
T KOG0818|consen  434 TLTKQVQELTEVVHALQASNAKLQSLMKVNRENLYNLKPTNPTRRMPSPLEIVETLERRLPPVGSTQEFERDDSEDRMDP  513 (669)
T ss_pred             hhHHHHHHHHHHHHHHHhhhHHHHHHHhhccccccccccCCcccCCCCchhhcccccccCCCCCCCCCcCcCccccccCc
Confidence            678889999999999999999999866542        222    11111111       22211            111


Q ss_pred             CCCCCCcccccccCCC---------CCC-------CCCCCChhhHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHH
Q psy13624         58 CSPQRPASMYNVTVNA---------QST-------TTRMPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIR  121 (187)
Q Consensus        58 ~~~~Rp~SMye~~~~~---------~~t-------~~~~P~~e~Vir~TE~vT~~IqeLl~aaq~~~~~~~fvpcae~I~  121 (187)
                      .|-+|+.+||+.|-..         |.|       +|++|+.|||+.+||+||++||||+++||+.++ ++|+||+|+|+
T Consensus       514 ~g~~~~~~~~~rr~vN~~kgd~~v~~~tssl~~~~~~~~p~~eev~i~te~vt~~~~el~ra~qe~~~-~s~~p~~eli~  592 (669)
T KOG0818|consen  514 GGLGRRANGSDRRNVNDHKGDKLVEPSTSSLSRSSQPGLPSTEEVIIKTEQVTKNIQELLRAAQEQKH-DSTRPCSELIH  592 (669)
T ss_pred             ccccCcccchhhhccccccCCcccCcCccccccCCCCCCCccchheecHHHHhHHHHHHHHHHHhhhc-cccccHHHHHH
Confidence            1237888888876442         333       578999999999999999999999999999777 99999999999


Q ss_pred             HHHHHHHhhcCCCCCchHHHHHHHHhhhhhHHHHHHh-hhh----------HHhHHHHHHHHHHHHHHHHHhhhhcC
Q psy13624        122 IAVSELSAIFPQNTNNDLIRHALRSLNTSTVRLQAEC-AQL----------EGSAERVRSCAYNMAKANKQLLTQFQ  187 (187)
Q Consensus       122 ~AV~el~alFP~~~~~e~vr~~L~~L~~~a~~Lq~eC-~~~----------q~~t~qv~~cAYdIAKAaK~LvT~f~  187 (187)
                      .||++|++|||+.|.++.+|++|++|+.++++||+|| +++          |+.++|||+||||||||+|+|||+|+
T Consensus       593 ~avt~~~al~ak~pa~d~~r~sl~Llt~~~~~lqhEc~kav~~d~~~~~~~ql~t~~VidcA~~IA~a~k~lV~~f~  669 (669)
T KOG0818|consen  593 HAVTEMAALFAKGPASDPVRASLRLLTISAYRLQHECIKAVPLDPGKPNDPQLMTQQVIDCAYDIAKAAKQLVTIFT  669 (669)
T ss_pred             HHhhhHHHhccCCCccchHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCCchhhhhHHHHHHHHHHHHHHHHHHhccC
Confidence            9999999999999999999999999999999999999 433          77899999999999999999999996

>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP

Probab=93.86  E-value=0.16  Score=35.82  Aligned_cols=34  Identities=26%  Similarity=0.504  Sum_probs=31.1

Q ss_pred             hhHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q psy13624          3 SEAHITHLNNEIAKLKTQVQQVIGENETLKAALN   36 (187)
Q Consensus         3 Sea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~   36 (187)
                      |.+||.+|+.++..|..+|.+|..+...|+..+.
T Consensus         1 s~akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~   34 (56)
T PF04728_consen    1 SNAKIDQLSSDVQTLNSKVDQLSSDVNALRADVQ   34 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6789999999999999999999999999996554

The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.

>PF03623 Focal_AT: Focal adhesion targeting region; InterPro: IPR005189 Focal adhesion kinase (FAK) is a tyrosine kinase found in focal adhesions, intracellular signalling complexes that are formed following engagement of the extracellular matrix by integrins

Probab=92.58  E-value=2.2  Score=34.98  Aligned_cols=102  Identities=18%  Similarity=0.247  Sum_probs=75.0

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHHHH-------HHHHHhhcCCCCCchHHHHHHHHhhhhhHHH
Q psy13624         82 QSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIA-------VSELSAIFPQNTNNDLIRHALRSLNTSTVRL  154 (187)
Q Consensus        82 ~~e~Vir~TE~vT~~IqeLl~aaq~~~~~~~fvpcae~I~~A-------V~el~alFP~~~~~e~vr~~L~~L~~~a~~L  154 (187)
                      ..|.|.+.|-.|-|.+-.|=...+..+ .+.|+.|-..|..+       |.++...||... -.+|.-+=+.|+..-..|
T Consensus         7 ~~D~Vy~at~~VVkaV~~Ls~~v~~~~-~~~y~~~VK~VG~~Lr~Ll~sVd~~~~~l~~s~-~~EVema~klL~~DM~eL   84 (139)
T PF03623_consen    7 TNDKVYDATTGVVKAVMQLSNSVQTAK-PEEYVDLVKNVGLALRDLLTSVDQILPSLPSSV-RREVEMAHKLLSKDMAEL   84 (139)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHTTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHGGGSHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred             ccChHHHHHHHHHHHHHHHHhhhccCC-hHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHH-HHHHHHHHHHHHHHHHHH
Confidence            368999999999999999999999865 58999999888865       455567787655 556666656665554444


Q ss_pred             HHHhhhhH---------HhHHHHHHHHHHHHHHHHHhhhh
Q psy13624        155 QAECAQLE---------GSAERVRSCAYNMAKANKQLLTQ  185 (187)
Q Consensus       155 q~eC~~~q---------~~t~qv~~cAYdIAKAaK~LvT~  185 (187)
                      ...=+.+|         ..-.++..+||-+|.-+|.|+.-
T Consensus        85 i~~mklaq~~~~ttl~~eyrr~ml~aah~LA~daKnLlD~  124 (139)
T PF03623_consen   85 ISAMKLAQQNSNTTLDEEYRRQMLSAAHVLAMDAKNLLDV  124 (139)
T ss_dssp             HHHHHHHHHTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            33332221         12568889999999999999864

The C-terminal "focal adhesion targeting" (FAT) region is necessary and sufficient for localizing FAK to focal adhesions. The crystal structure of FAT shows it forms a four-helix bundle that resembles those found in two other proteins involved in cell adhesion, alpha-catenin and vinculin []. The binding of FAT to the focal adhesion protein, paxillin, requires the integrity of the helical bundle, whereas binding to another focal adhesion protein, talin, does not.; GO: 0004713 protein tyrosine kinase activity, 0004871 signal transducer activity, 0006468 protein phosphorylation, 0007172 signal complex assembly, 0005925 focal adhesion; PDB: 1K05_C 1OW8_C 1OW7_C 3S9O_C 3B71_B 1K04_A 1OW6_C 3GM1_B 3GM3_A 3GM2_A ....

>smart00307 ILWEQ I/LWEQ domain

Probab=92.19  E-value=1.7  Score=37.45  Aligned_cols=106  Identities=15%  Similarity=0.227  Sum_probs=78.9

Q ss_pred             CCChhhHHHHHHHHHHHHHHHHHHhcc--------CC---C-----------CCCccchHHHHHHHHHHHHhhcCC----
Q psy13624         80 MPQSEEVVRRTDQVTKRIQELAAHMRS--------SD---K-----------CHSFVPHAERIRIAVSELSAIFPQ----  133 (187)
Q Consensus        80 ~P~~e~Vir~TE~vT~~IqeLl~aaq~--------~~---~-----------~~~fvpcae~I~~AV~el~alFP~----  133 (187)
                      +..-|-+......||.+|..|+.++-.        |+   .           .+..+.+|..|..|++-|..-...    
T Consensus         4 l~v~e~IL~aa~~i~~a~~~Lv~aA~~~Q~Eiv~~gr~~~~~~~fY~kn~~w~EgLisAAkaV~~a~~~Lv~aA~~~~~g   83 (200)
T smart00307        4 LEVDESILEAAKAITKAIAALVKAATNAQREIVAQGRGGASPGEFYKKNSRWTEGLISAAKAVAAATNVLVEAADGVVTG   83 (200)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            455677888888999999999976543        11   1           133457788888888777544332    


Q ss_pred             CCCchHHHHHHHHhhhhhHHHHHHhhhhH----HhHHHHHHHHHHHHHHHHHhhhh
Q psy13624        134 NTNNDLIRHALRSLNTSTVRLQAECAQLE----GSAERVRSCAYNMAKANKQLLTQ  185 (187)
Q Consensus       134 ~~~~e~vr~~L~~L~~~a~~Lq~eC~~~q----~~t~qv~~cAYdIAKAaK~LvT~  185 (187)
                      ....|.+-.+-+...++|.+|-+-|..-.    ...+++..|+-.|+.|++.||-.
T Consensus        84 ~~~~E~LI~aAk~VAasTaQLVaAsrvka~~~S~~~~~L~~Ask~V~~At~~LVaa  139 (200)
T smart00307       84 KGSEEELIVAAKEVAASTAQLVAASRVKADKDSQAQDRLQAASKAVTNATANLVAA  139 (200)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence            34789999999999999999999996331    13788999999999999999853

Thought to possess an F-actin binding function.

>smart00338 BRLZ basic region leucin zipper

Probab=90.18  E-value=0.72  Score=31.88  Aligned_cols=32  Identities=31%  Similarity=0.482  Sum_probs=22.2

Q ss_pred             hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624          4 EAHITHLNNEIAKLKTQVQQVIGENETLKAAL   35 (187)
Q Consensus         4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~   35 (187)
                      |.++++|..+...|+..|..|..||..|+..+
T Consensus        32 e~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~   63 (65)
T smart00338       32 ERKVEQLEAENERLKKEIERLRRELEKLKSEL   63 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44566777777777777777777777777544

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=89.82  E-value=0.87  Score=33.17  Aligned_cols=29  Identities=28%  Similarity=0.355  Sum_probs=23.1

Q ss_pred             hHHHHhHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624          4 EAHITHLNNEIAKLKTQVQQVIGENETLK   32 (187)
Q Consensus         4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk   32 (187)
                      |+||+.+-+.|..||.+|+.|..+|..|+
T Consensus        10 E~ki~~aveti~~Lq~e~eeLke~n~~L~   38 (72)
T PF06005_consen   10 EEKIQQAVETIALLQMENEELKEKNNELK   38 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            67888888888888888888888655555

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=89.06  E-value=0.7  Score=32.96  Aligned_cols=29  Identities=31%  Similarity=0.393  Sum_probs=26.0

Q ss_pred             HHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624          7 ITHLNNEIAKLKTQVQQVIGENETLKAAL   35 (187)
Q Consensus         7 iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~   35 (187)
                      +.-|++.|..|+..+.+|+.||+-||+..
T Consensus        16 VevLK~~I~eL~~~n~~Le~EN~~Lk~~~   44 (59)
T PF01166_consen   16 VEVLKEQIAELEERNSQLEEENNLLKQNA   44 (59)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            55799999999999999999999999654

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=89.00  E-value=0.83  Score=34.28  Aligned_cols=34  Identities=18%  Similarity=0.364  Sum_probs=30.1

Q ss_pred             hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624          4 EAHITHLNNEIAKLKTQVQQVIGENETLKAALNA   37 (187)
Q Consensus         4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~   37 (187)
                      |+|||.--++|..||.+|+.|..+|.+|....+.
T Consensus        10 E~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~   43 (79)
T PRK15422         10 EAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN   43 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999876554

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=88.09  E-value=1.2  Score=30.85  Aligned_cols=33  Identities=33%  Similarity=0.509  Sum_probs=27.9

Q ss_pred             HHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhhc
Q psy13624          6 HITHLNNEIAKLKTQVQQVIGENETLKAALNAR   38 (187)
Q Consensus         6 ~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~~   38 (187)
                      ++.+++.++..|++++++++.||..|+.++...
T Consensus        18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l   50 (80)
T PF04977_consen   18 RYYQLNQEIAELQKEIEELKKENEELKEEIERL   50 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            455888999999999999999999999877654

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

>PF12026 DUF3513: Domain of unknown function (DUF3513); InterPro: IPR021901 This presumed domain is functionally uncharacterised

Probab=86.56  E-value=6.8  Score=34.01  Aligned_cols=102  Identities=13%  Similarity=0.166  Sum_probs=70.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHHHHHHHHH---hhcCCCCCchHHHHHHHHhhhhhHHHHHHhh
Q psy13624         83 SEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELS---AIFPQNTNNDLIRHALRSLNTSTVRLQAECA  159 (187)
Q Consensus        83 ~e~Vir~TE~vT~~IqeLl~aaq~~~~~~~fvpcae~I~~AV~el~---alFP~~~~~e~vr~~L~~L~~~a~~Lq~eC~  159 (187)
                      .+........++++|..++.....+.-...||++|-.|..+-..|+   .-.=..-...+||.-+-.-.+.-.-+...|-
T Consensus        93 ~~q~~~~~~~L~~AId~F~~sv~~nQPP~iFv~~sK~VIl~ahkLVfiGDTl~r~~~~~dvr~~v~~~s~~Lc~~LK~~v  172 (210)
T PF12026_consen   93 SEQCRLHFGALQKAIDAFFSSVSNNQPPKIFVAHSKFVILSAHKLVFIGDTLCREAQSADVRNEVLCSSNQLCDLLKTLV  172 (210)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCCcchhhhcCcEEEEEeeeeeeeccHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            4556677888999999999999987666899999999999999998   5554445566777655433322222223331


Q ss_pred             h------hHH----hHHHHHHHHHHHHHHHHHhhh
Q psy13624        160 Q------LEG----SAERVRSCAYNMAKANKQLLT  184 (187)
Q Consensus       160 ~------~q~----~t~qv~~cAYdIAKAaK~LvT  184 (187)
                      .      +++    ++++..+++-+|++.|.++=+
T Consensus       173 ~aTK~AAl~yPs~~AlqeMvd~v~eLs~~A~qfr~  207 (210)
T PF12026_consen  173 LATKKAALQYPSPSALQEMVDRVKELSQHAQQFRT  207 (210)
T ss_dssp             HHHHHHHHT-S-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            1      111    499999999999999998754

This domain is found in eukaryotes. This domain is typically between 192 to 218 amino acids in length. This domain is found associated with PF00018 from PFAM, PF08824 from PFAM. This domain has a conserved QPP sequence motif. ; PDB: 3T6G_D 1X27_N.

>PRK00295 hypothetical protein; Provisional

Probab=84.46  E-value=4.8  Score=28.79  Aligned_cols=36  Identities=11%  Similarity=0.131  Sum_probs=27.5

Q ss_pred             hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhhcC
Q psy13624          4 EAHITHLNNEIAKLKTQVQQVIGENETLKAALNARN   39 (187)
Q Consensus         4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~~~   39 (187)
                      |..|.+|++.+-+.|..|..|+.+-..|+.++....
T Consensus        18 E~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~   53 (68)
T PRK00295         18 DDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV   53 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            455668888888888888888888888877665543

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.76  E-value=2.5  Score=31.51  Aligned_cols=32  Identities=19%  Similarity=0.383  Sum_probs=27.6

Q ss_pred             hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624          4 EAHITHLNNEIAKLKTQVQQVIGENETLKAAL   35 (187)
Q Consensus         4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~   35 (187)
                      |+|||.--+.|..||.+|+.|..+|.+|-+..
T Consensus        10 E~KiqqAvdTI~LLQmEieELKEknn~l~~e~   41 (79)
T COG3074          10 EAKVQQAIDTITLLQMEIEELKEKNNSLSQEV   41 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHH
Confidence            78999999999999999999999999886544

>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins

Probab=83.22  E-value=2.1  Score=34.26  Aligned_cols=27  Identities=26%  Similarity=0.362  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhcC
Q psy13624         13 EIAKLKTQVQQVIGENETLKAALNARN   39 (187)
Q Consensus        13 ei~~Lq~~i~~L~~EN~~Lk~~~~~~~   39 (187)
                      ...+|..++++|+-||..||.++....
T Consensus         4 t~EeLaaeL~kLqmENk~LKkkl~~~~   30 (118)
T PF05812_consen    4 TMEELAAELQKLQMENKALKKKLRQSV   30 (118)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            346789999999999999999886543

; PDB: 2OA5_B 2H3R_D.

>PRK00736 hypothetical protein; Provisional

Probab=82.43  E-value=6.9  Score=27.95  Aligned_cols=35  Identities=20%  Similarity=0.251  Sum_probs=27.2

Q ss_pred             hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhhc
Q psy13624          4 EAHITHLNNEIAKLKTQVQQVIGENETLKAALNAR   38 (187)
Q Consensus         4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~~   38 (187)
                      |..|.+|++.+-+.|..|..|+.+...|+.++...
T Consensus        18 e~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~   52 (68)
T PRK00736         18 EKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSL   52 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44566888888888888999988888887766553

>TIGR02209 ftsL_broad cell division protein FtsL

Probab=81.65  E-value=3.3  Score=29.48  Aligned_cols=33  Identities=24%  Similarity=0.373  Sum_probs=27.7

Q ss_pred             HHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhhc
Q psy13624          6 HITHLNNEIAKLKTQVQQVIGENETLKAALNAR   38 (187)
Q Consensus         6 ~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~~   38 (187)
                      .+.++..++..++.++.+++.||..|+.+...-
T Consensus        25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l   57 (85)
T TIGR02209        25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAEL   57 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445888899999999999999999999776553

This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.

>PRK04406 hypothetical protein; Provisional

Probab=81.19  E-value=7.6  Score=28.39  Aligned_cols=36  Identities=11%  Similarity=0.243  Sum_probs=28.2

Q ss_pred             hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhhcC
Q psy13624          4 EAHITHLNNEIAKLKTQVQQVIGENETLKAALNARN   39 (187)
Q Consensus         4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~~~   39 (187)
                      |..|.+|++.+-..|.+|..|+.+-..|+.++....
T Consensus        24 E~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~   59 (75)
T PRK04406         24 EQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD   59 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            445668888888889999999988888887775543

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=80.85  E-value=3  Score=32.47  Aligned_cols=29  Identities=34%  Similarity=0.586  Sum_probs=22.6

Q ss_pred             hHHHHhHHHHHHHHHHHHHHHHhhhHHHH
Q psy13624          4 EAHITHLNNEIAKLKTQVQQVIGENETLK   32 (187)
Q Consensus         4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk   32 (187)
                      |.+|..|.++|..|+..|..|-.||..|+
T Consensus        14 e~~l~~l~~~~~~LK~~~~~l~EEN~~L~   42 (107)
T PF06156_consen   14 EQQLGQLLEELEELKKQLQELLEENARLR   42 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677888888888888888777777666

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PHA03162 hypothetical protein; Provisional

Probab=80.58  E-value=3.1  Score=34.06  Aligned_cols=24  Identities=21%  Similarity=0.390  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624         14 IAKLKTQVQQVIGENETLKAALNA   37 (187)
Q Consensus        14 i~~Lq~~i~~L~~EN~~Lk~~~~~   37 (187)
                      ..+|..++++|+-||..||.++..
T Consensus        15 mEeLaaeL~kLqmENK~LKkkl~~   38 (135)
T PHA03162         15 MEDLAAEIAKLQLENKALKKKIKE   38 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            457889999999999999998844

>PRK02793 phi X174 lysis protein; Provisional

Probab=80.34  E-value=8.6  Score=27.75  Aligned_cols=36  Identities=19%  Similarity=0.245  Sum_probs=28.9

Q ss_pred             hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhhcC
Q psy13624          4 EAHITHLNNEIAKLKTQVQQVIGENETLKAALNARN   39 (187)
Q Consensus         4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~~~   39 (187)
                      |..|.+|++.+-+.|..|..|+.+-..|+.++....
T Consensus        21 e~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~   56 (72)
T PRK02793         21 EITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ   56 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            455668888999999999999999888887776643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	187
2jx0_A	135	The Paxillin-Binding Domain (Pbd) Of G Protein Coup		7e-17

>pdb|2JX0|A Chain A, The Paxillin-Binding Domain (Pbd) Of G Protein Coupled Receptor (Gpcr)-Kinase (Grk) Interacting Protein 1 (Git1) Length = 135

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 75/118 (63%), Gaps = 16/118 (13%)
Query: 80  MPQSEEVVRRTDQVTKRIQELAAHMRSSD--KCHSFVPHAERIRIAVSELSAIFPQNTNN 137
           +P +E+V+ +T+QVTK IQEL   +R++   K  SFVP +E+I +AV+E++++FP+    
Sbjct: 13  LPSTEDVILKTEQVTKNIQEL---LRAAQEFKHDSFVPCSEKIHLAVTEMASLFPKRPAL 69
Query: 138 DLIRHALRSLNTSTVRLQAEC-----------AQLEGSAERVRSCAYNMAKANKQLLT 184
           + +R +LR LN S  RLQ+EC              +   ++V  CAY++AKA KQL+T
Sbjct: 70  EPVRSSLRLLNASAYRLQSECRKTVPPEPGAPVDFQLLTQQVIQCAYDIAKAAKQLVT 127

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	187
2jx0_A	135	ARF GTPase-activating protein GIT1; paxillin bindi	3e-27

>2jx0_A ARF GTPase-activating protein GIT1; paxillin binding domain homologue, ANK repeat, cytoplasm, GTPase activation, metal-binding; NMR {Rattus norvegicus} Length = 135

 Score = 99.1 bits (246), Expect = 3e-27
 Identities = 45/119 (37%), Positives = 72/119 (60%), Gaps = 12/119 (10%)

Query: 80  MPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDL 139
           +P +E+V+ +T+QVTK IQEL    +      SFVP +E+I +AV+E++++FP+    + 
Sbjct: 13  LPSTEDVILKTEQVTKNIQELLRAAQEFKH-DSFVPCSEKIHLAVTEMASLFPKRPALEP 71

Query: 140 IRHALRSLNTSTVRLQAECAQL-----------EGSAERVRSCAYNMAKANKQLLTQFQ 187
           +R +LR LN S  RLQ+EC +            +   ++V  CAY++AKA KQL+T   
Sbjct: 72  VRSSLRLLNASAYRLQSECRKTVPPEPGAPVDFQLLTQQVIQCAYDIAKAAKQLVTITT 130

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	187
2jx0_A	135	ARF GTPase-activating protein GIT1; paxillin bindi	100.0
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	98.45
3gm3_A	153	Protein tyrosine kinase 2 beta; four-helix bundle,	93.36
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	92.66
1jcd_A	52	Major outer membrane lipoprotein; protein folding,	91.77
1k04_A	162	FADK 1, focal adhesion kinase 1; UP-DOWN-UP-DOWN f	90.88
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	90.6
1sj8_A	308	Talin 1; structural protein; 2.60A {Mus musculus}	90.16
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	89.85
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	89.78
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	89.44
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	89.38
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	89.21
3dyj_A	332	Talin-1; helix bundles, cytoskeletal protein, inte	88.46
3t6g_B	229	Breast cancer anti-estrogen resistance protein 1;	88.12
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	87.6
2akf_A	32	Coronin-1A; coiled coil, protein binding; 1.20A {S	87.0
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	86.62
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	86.26
1tr2_A	1066	Vinculin isoform 1; actin-binding, cell adhesion;	84.58
2oa5_A	110	Hypothetical protein BQLF2; MHR28B, NESG, structur	84.02
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	82.71
1qkr_A	188	Vinculin, tail domain; actin cytoskeleton, cell ad	82.51
1dip_A	78	Delta-sleep-inducing peptide immunoreactive peptid	81.8
2l6f_A	215	Focal adhesion kinase 1, linker1, paxillin, linke	81.69

>2jx0_A ARF GTPase-activating protein GIT1; paxillin binding domain homologue, ANK repeat, cytoplasm, GTPase activation, metal-binding; NMR {Rattus norvegicus}

Probab=100.00  E-value=2.6e-47  Score=303.19  Aligned_cols=110  Identities=41%  Similarity=0.655  Sum_probs=104.7

Q ss_pred             CCCCCChhhHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHHHHHHHHHhhcCCCCCchHHHHHHHHhhhhhHHHHH
Q psy13624         77 TTRMPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTSTVRLQA  156 (187)
Q Consensus        77 ~~~~P~~e~Vir~TE~vT~~IqeLl~aaq~~~~~~~fvpcae~I~~AV~el~alFP~~~~~e~vr~~L~~L~~~a~~Lq~  156 (187)
                      .+++|++||||||||+|||||||||+|||++++ ++|+||||||++||+||++|||++|++|+||.+|++|++++.+||+
T Consensus        10 ~~~~P~~e~Vvr~TE~ITk~IqeLl~AaQ~~~~-~sfvpcserI~~AV~el~aLfp~~p~~etvr~sL~~L~~~a~~Lq~   88 (135)
T 2jx0_A           10 DPGLPSTEDVILKTEQVTKNIQELLRAAQEFKH-DSFVPCSEKIHLAVTEMASLFPKRPALEPVRSSLRLLNASAYRLQS   88 (135)
T ss_dssp             BSSCSCHHHHHHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHTSCSSBCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHHhcccc-CccccHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHH
Confidence            467999999999999999999999999999865 9999999999999999999999999999999999999999999999


Q ss_pred             Hhhhh-----------HHhHHHHHHHHHHHHHHHHHhhhhcC
Q psy13624        157 ECAQL-----------EGSAERVRSCAYNMAKANKQLLTQFQ  187 (187)
Q Consensus       157 eC~~~-----------q~~t~qv~~cAYdIAKAaK~LvT~f~  187 (187)
                      ||+.+           |++|+|||+||||||||||+|||+|+
T Consensus        89 EC~~~q~~~~~~~~~iq~~tqqVi~cAYdIAkAaK~Lvt~~~  130 (135)
T 2jx0_A           89 ECRKTVPPEPGAPVDFQLLTQQVIQCAYDIAKAAKQLVTITT  130 (135)
T ss_dssp             HHHSCCCSCTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHccCCCcccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99766           55699999999999999999999985

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=98.45  E-value=1.1e-07  Score=66.55  Aligned_cols=32  Identities=31%  Similarity=0.537  Sum_probs=30.3

Q ss_pred             chhHHHH-------hHHHHHHHHHHHHHHHHhhhHHHHH
Q psy13624          2 ISEAHIT-------HLNNEIAKLKTQVQQVIGENETLKA   33 (187)
Q Consensus         2 ~Sea~iq-------~l~~ei~~Lq~~i~~L~~EN~~Lk~   33 (187)
                      +||||||       +|++|||.||++|++|++||+.||.
T Consensus        24 aSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~   62 (63)
T 2w6a_A           24 TSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence            6999999       8999999999999999999999983

>3gm3_A Protein tyrosine kinase 2 beta; four-helix bundle, transferase; 2.60A {Homo sapiens} SCOP: a.24.14.0 PDB: 3gm1_A 3gm2_A 3u3f_A 3u3c_A 2lk4_A

Probab=93.36  E-value=0.7  Score=37.29  Aligned_cols=102  Identities=14%  Similarity=0.202  Sum_probs=74.8

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHHHHHHHHH-------hhcCCCCCchHHHHHHHHhhhhhHHH
Q psy13624         82 QSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELS-------AIFPQNTNNDLIRHALRSLNTSTVRL  154 (187)
Q Consensus        82 ~~e~Vir~TE~vT~~IqeLl~aaq~~~~~~~fvpcae~I~~AV~el~-------alFP~~~~~e~vr~~L~~L~~~a~~L  154 (187)
                      +.|.|...|=.|.|.+-+|=...+.. ..+.|+.|-..|..+..+|.       .+||... -.+|.-+=+.|+..-..|
T Consensus        20 t~D~VY~at~~VVkaV~~Ls~~v~~a-~~e~Y~~lVK~VGl~LR~Ll~sVd~~~~~lp~s~-~~EIema~k~L~kDM~eL   97 (153)
T 3gm3_A           20 TDDLVYLNVMELVRAVLELKNELAQL-PPEGYVVVVKNVGLTLRKLIGSVDDLLPSLPSSS-RTEIEGTQKLLNKDLAEL   97 (153)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHGGGC-CHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHH-HHHHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHHhhhhhc-ChHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHH-HHHHHHHHHHHHHHHHHH
Confidence            36889999999999999999999984 44899999999987765555       4565544 367777777776654444


Q ss_pred             HHHhhhhH---------HhHHHHHHHHHHHHHHHHHhhhh
Q psy13624        155 QAECAQLE---------GSAERVRSCAYNMAKANKQLLTQ  185 (187)
Q Consensus       155 q~eC~~~q---------~~t~qv~~cAYdIAKAaK~LvT~  185 (187)
                      -..=+-.|         -.-.++...||-+|..+|.|+.-
T Consensus        98 Is~MkLAqq~~~TtL~eEyrr~MLsaaH~LA~DaKNLlD~  137 (153)
T 3gm3_A           98 INKMRLAQQNAVTSLSEECKRQMLTASHTLAVDAKNLLDA  137 (153)
T ss_dssp             HHHHHHHHHTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33332221         12567889999999999999863

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=92.66  E-value=0.19  Score=33.82  Aligned_cols=32  Identities=25%  Similarity=0.283  Sum_probs=26.8

Q ss_pred             hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624          4 EAHITHLNNEIAKLKTQVQQVIGENETLKAAL   35 (187)
Q Consensus         4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~   35 (187)
                      |.++.+|+.+...|+.+|+.|..|+..||+.+
T Consensus        28 e~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l   59 (61)
T 1t2k_D           28 EKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL   59 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44566889999999999999999999998765

>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A

Probab=91.77  E-value=0.25  Score=33.20  Aligned_cols=35  Identities=11%  Similarity=0.203  Sum_probs=30.8

Q ss_pred             hhHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Q psy13624          3 SEAHITHLNNEIAKLKTQVQQVIGENETLKAALNA   37 (187)
Q Consensus         3 Sea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~   37 (187)
                      |+++|++|+.++..|-.+|.+|+++...|++.+..
T Consensus         2 s~aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~   36 (52)
T 1jcd_A            2 SNAKADQASSDAQTANAKADQASNDANAARSDAQA   36 (52)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68899999999999999999999999999976543

>1k04_A FADK 1, focal adhesion kinase 1; UP-DOWN-UP-DOWN four helical bundle forming A helix-exchange transferase; 1.95A {Homo sapiens} SCOP: a.24.14.1 PDB: 1k05_A 3b71_A 1ow6_A 1ow7_A 1ow8_A 1ktm_A 1qvx_A 1pv3_A 2ra7_A* 1k40_A

Probab=90.88  E-value=2.3  Score=34.59  Aligned_cols=102  Identities=19%  Similarity=0.304  Sum_probs=72.6

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHHHHHHHHH-------hhcCCCCCchHHHHHHHHhhhhhHHH
Q psy13624         82 QSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELS-------AIFPQNTNNDLIRHALRSLNTSTVRL  154 (187)
Q Consensus        82 ~~e~Vir~TE~vT~~IqeLl~aaq~~~~~~~fvpcae~I~~AV~el~-------alFP~~~~~e~vr~~L~~L~~~a~~L  154 (187)
                      +.|.|...|-.|.|.+-+|=..++..+. +.|++|-..|..+...|.       ..||... -.+|.-+-+.|+.--.-|
T Consensus        30 t~D~Vy~at~~VVkaV~~Ls~~v~~a~~-eey~~~VK~VGl~LR~Ll~sVd~~~~~lp~s~-~rEVema~k~L~kDM~eL  107 (162)
T 1k04_A           30 SNDKVYENVTGLVKAVIEMSSKIQPAPP-EEYVPMVKEVGLALRTLLATVDETIPLLPAST-HREIEMAQKLLNSDLGEL  107 (162)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHSCCCG-GGHHHHHHHHHHHHHHHHHHHHHHGGGSCHHH-HHHHHHHHHHHHHHHHHH
T ss_pred             cCCcHHHHHHHHHHHHHHHHHhhhhcCh-HHHHHHHHHHHHHHHHHHHhHhhhhhccCHHh-hHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999998655 999999988877655544       6776555 455666666555443333


Q ss_pred             HHHhhhhH---------HhHHHHHHHHHHHHHHHHHhhhh
Q psy13624        155 QAECAQLE---------GSAERVRSCAYNMAKANKQLLTQ  185 (187)
Q Consensus       155 q~eC~~~q---------~~t~qv~~cAYdIAKAaK~LvT~  185 (187)
                      ...=+..|         ..=.++...|+-+|..+|.|+.-
T Consensus       108 is~mklaq~~~~TtL~~EyRk~mLsaah~LA~daKNLld~  147 (162)
T 1k04_A          108 INKMKLAQQYVMTSLQQEYKKQMLTAAHALAVDAKNLLDV  147 (162)
T ss_dssp             HHHHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhccCccHHHHHHHHHHhhhHHHHHhcccHHHH
Confidence            22222221         11346789999999999999853

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=90.60  E-value=0.43  Score=32.60  Aligned_cols=32  Identities=19%  Similarity=0.238  Sum_probs=26.1

Q ss_pred             hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624          4 EAHITHLNNEIAKLKTQVQQVIGENETLKAAL   35 (187)
Q Consensus         4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~   35 (187)
                      +.++.+|+.+...|...|..|+.|+..||..+
T Consensus        29 e~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll   60 (63)
T 1ci6_A           29 TGECKELEKKNEALKERADSLAKEIQYLKDLI   60 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566888888889999999999999988654

>1sj8_A Talin 1; structural protein; 2.60A {Mus musculus} SCOP: a.215.1.1 a.216.1.1

Probab=90.16  E-value=2.6  Score=37.34  Aligned_cols=105  Identities=13%  Similarity=0.172  Sum_probs=76.2

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHhccCCC--CCCccchHHHHHHHHHHHHh-hcCCC---CCchHHHHHHHHhhhhhHHHH
Q psy13624         82 QSEEVVRRTDQVTKRIQELAAHMRSSDK--CHSFVPHAERIRIAVSELSA-IFPQN---TNNDLIRHALRSLNTSTVRLQ  155 (187)
Q Consensus        82 ~~e~Vir~TE~vT~~IqeLl~aaq~~~~--~~~fvpcae~I~~AV~el~a-lFP~~---~~~e~vr~~L~~L~~~a~~Lq  155 (187)
                      ..+.+...+..||..|..|++++.....  +..++.++-+|..+-.++.. |=|.+   .-.|.+-++-+....+|..|-
T Consensus       123 ~~~~Ll~AAk~l~~Ais~Llkaa~~~~~e~rq~ll~AA~~Vg~as~~~l~~i~e~~~d~~~~e~Li~aAKAVA~ATa~LV  202 (308)
T 1sj8_A          123 NGRPLLQAAKGLAGAVSELLRSAQPASAEPRQNLLQAAGNVGQASGELLQQIGESDTDPHFQDVLMQLANAVASAAAALV  202 (308)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHCTTCCSCTHHHHHHHHHHHHHHHHHHHHTTCCCSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHhCCccccchHHHHHHHHHhHhHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHH
Confidence            3567999999999999999999988433  12388899999988876663 33221   134556666677777788777


Q ss_pred             HHhhhhHHh------HHHHHHHHHHHHHHHHHhhhhc
Q psy13624        156 AECAQLEGS------AERVRSCAYNMAKANKQLLTQF  186 (187)
Q Consensus       156 ~eC~~~q~~------t~qv~~cAYdIAKAaK~LvT~f  186 (187)
                      ..++.+...      =++||..|-++|.+|-|||+.+
T Consensus       203 ~~Ak~Va~~~~d~e~Q~~lI~AA~~~A~sTsQLVA~s  239 (308)
T 1sj8_A          203 LKAKSVAQRTEDSGLQTQVIAAATQCALSTSQLVACT  239 (308)
T ss_dssp             HHHHHHHTSCTTSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777665221      3589999999999999999864

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=89.85  E-value=0.51  Score=34.42  Aligned_cols=32  Identities=19%  Similarity=0.383  Sum_probs=26.3

Q ss_pred             hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624          4 EAHITHLNNEIAKLKTQVQQVIGENETLKAAL   35 (187)
Q Consensus         4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~   35 (187)
                      |+|||.+-+.|..||.+|+.|..+|..|....
T Consensus        12 E~KIq~avdtI~lLqmEieELKekN~~L~~e~   43 (81)
T 2jee_A           12 EAKVQQAIDTITLLQMEIEELKEKNNSLSQEV   43 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999988888888888888888876543

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=89.78  E-value=0.27  Score=33.24  Aligned_cols=32  Identities=16%  Similarity=0.254  Sum_probs=20.7

Q ss_pred             hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624          4 EAHITHLNNEIAKLKTQVQQVIGENETLKAAL   35 (187)
Q Consensus         4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~   35 (187)
                      |.++.+|..+...|+.+|..|..|+..||..+
T Consensus        28 e~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l   59 (62)
T 1jnm_A           28 EEKVKTLKAQNSELASTANMLREQVAQLKQKV   59 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555777777777777777777777777554

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=89.44  E-value=0.57  Score=31.28  Aligned_cols=33  Identities=33%  Similarity=0.503  Sum_probs=29.4

Q ss_pred             hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q psy13624          4 EAHITHLNNEIAKLKTQVQQVIGENETLKAALN   36 (187)
Q Consensus         4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~   36 (187)
                      .+.+..|+.|+..||.+++.|..++.+|++.+.
T Consensus        18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~   50 (53)
T 2yy0_A           18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLA   50 (53)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456678999999999999999999999998774

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=89.38  E-value=0.73  Score=29.91  Aligned_cols=32  Identities=25%  Similarity=0.453  Sum_probs=28.7

Q ss_pred             hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624          4 EAHITHLNNEIAKLKTQVQQVIGENETLKAAL   35 (187)
Q Consensus         4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~   35 (187)
                      |++..+|..-+.+|...|.-|+.||.-||+.+
T Consensus         9 E~r~k~le~~naeLEervstLq~EN~mLRqvl   40 (42)
T 2oqq_A            9 ENRVKDLENKNSELEERLSTLQNENQMLRHIL   40 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence            67778999999999999999999999999765

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=89.21  E-value=0.57  Score=34.33  Aligned_cols=37  Identities=22%  Similarity=0.291  Sum_probs=29.8

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhhcCCC
Q psy13624          5 AHITHLNNEIAKLKTQVQQVIGENETLKAALNARNSA   41 (187)
Q Consensus         5 a~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~~~~~   41 (187)
                      .++..|..|...|+.+|+.|..|+..||..+.+.|++
T Consensus        43 ~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~   79 (87)
T 1hjb_A           43 HKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEP   79 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHH
Confidence            3455899999999999999999999999998776643

>3dyj_A Talin-1; helix bundles, cytoskeletal protein, integrin-bindin site, IBS2, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane; 1.85A {Mus musculus} PDB: 4dj9_B

Probab=88.46  E-value=3.9  Score=36.47  Aligned_cols=100  Identities=13%  Similarity=0.121  Sum_probs=66.6

Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHHHHHHHHHhhcC---CCCC-chHHHHHHHHhhhhhHHHHH
Q psy13624         81 PQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFP---QNTN-NDLIRHALRSLNTSTVRLQA  156 (187)
Q Consensus        81 P~~e~Vir~TE~vT~~IqeLl~aaq~~~~~~~fvpcae~I~~AV~el~alFP---~~~~-~e~vr~~L~~L~~~a~~Lq~  156 (187)
                      ..+|+|||.|.-||..+-.++.+.+.+.+ ++.+..+-.-|.+|.+|+.--.   -.+. ++++|...   ..+....-.
T Consensus       209 ~tpE~li~~ak~vt~atakaVaA~ns~~q-eDii~aan~~r~aV~dll~~~k~aa~~~~~~~e~r~~~---~~~~k~~a~  284 (332)
T 3dyj_A          209 STPEDFIRMTKGITMATAKAVAAGNSCRQ-EDVIATANLSRRAIADMLRACKEAAFHPEVAPDVRLRA---LHYGRECAN  284 (332)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHTSTTSCHHHHHHH---HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHhHHHHHHHHHHHHHHHHhccCCCHHHHHHH---HHHHHHHHH
Confidence            46999999999999999999999987555 9999999999999999987542   1122 44444322   111111111


Q ss_pred             Hhhhh------------HHhHHHHHHHHHHHHHHHHHhhh
Q psy13624        157 ECAQL------------EGSAERVRSCAYNMAKANKQLLT  184 (187)
Q Consensus       157 eC~~~------------q~~t~qv~~cAYdIAKAaK~LvT  184 (187)
                      .+..+            .-.=+++-.++-.||.+.-.||+
T Consensus       285 ~~~~LL~~v~~~~~~P~~~~k~~L~~~Sr~VA~aVteLV~  324 (332)
T 3dyj_A          285 GYLELLDHVLLTLQKPNPDLKQQLTGHSKRVAGSVTELIQ  324 (332)
T ss_dssp             HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111            01245677788888888777775

>3t6g_B Breast cancer anti-estrogen resistance protein 1; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens}

Probab=88.12  E-value=3.7  Score=35.02  Aligned_cols=100  Identities=9%  Similarity=0.156  Sum_probs=71.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHHHHHHHHH---hhcCCCCCchHHHHHHHHhhhhhHHHHHHhhhh
Q psy13624         85 EVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELS---AIFPQNTNNDLIRHALRSLNTSTVRLQAECAQL  161 (187)
Q Consensus        85 ~Vir~TE~vT~~IqeLl~aaq~~~~~~~fvpcae~I~~AV~el~---alFP~~~~~e~vr~~L~~L~~~a~~Lq~eC~~~  161 (187)
                      -.......++++|-.|+..++.+.-+..||++|-.|..+-.+|+   .-.=..-....||.-+....+.-.-+...|-..
T Consensus       107 Qc~s~~~~L~~AIdaF~~sv~~nQPP~iFVahsK~VIlsAHKLVfIGDTL~r~~~~~dvr~~Vl~~sn~Lc~~LK~~VlA  186 (229)
T 3t6g_B          107 QCEANLTTLTNAVDAFFTAVATNQPPKIFVAHSKFVILSAHKLVFIGDTLSRQAKAADVRSQVTHYSNLLCDLLRGIVAT  186 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCchhhHhcCCEEEEEeeeeeeecchHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35556788999999999999987666899999999999999998   555444566677765543333222233333111


Q ss_pred             ----------HHhHHHHHHHHHHHHHHHHHhhh
Q psy13624        162 ----------EGSAERVRSCAYNMAKANKQLLT  184 (187)
Q Consensus       162 ----------q~~t~qv~~cAYdIAKAaK~LvT  184 (187)
                                -.++++..+++-+|+..|.++=+
T Consensus       187 TK~AAl~YPS~~AlQeMvd~v~eLs~~Aqqfr~  219 (229)
T 3t6g_B          187 TKAAALQYPSPSAAQDMVERVKELGHSTQQFRR  219 (229)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      11499999999999999987643

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=87.60  E-value=0.59  Score=33.56  Aligned_cols=35  Identities=23%  Similarity=0.302  Sum_probs=27.9

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHhhcC
Q psy13624          5 AHITHLNNEIAKLKTQVQQVIGENETLKAALNARN   39 (187)
Q Consensus         5 a~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~~~   39 (187)
                      .++..|..|...|+.+|+.|..|+..||..+.+.|
T Consensus        43 ~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q~p   77 (78)
T 1gu4_A           43 HKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP   77 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            35558999999999999999999999997775543

>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}

Probab=87.00  E-value=0.91  Score=27.60  Aligned_cols=26  Identities=19%  Similarity=0.364  Sum_probs=22.6

Q ss_pred             hHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy13624          9 HLNNEIAKLKTQVQQVIGENETLKAA   34 (187)
Q Consensus         9 ~l~~ei~~Lq~~i~~L~~EN~~Lk~~   34 (187)
                      .|.+++|+|++.|++||.-..-|...
T Consensus         3 rlee~~r~l~~ivq~lq~r~drle~t   28 (32)
T 2akf_A            3 RLEEDVRNLNAIVQKLQERLDRLEET   28 (32)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58899999999999999988887643

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=86.62  E-value=0.89  Score=32.03  Aligned_cols=33  Identities=24%  Similarity=0.395  Sum_probs=27.3

Q ss_pred             hHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q psy13624          4 EAHITHLNNEIAKLKTQVQQVIGENETLKAALN   36 (187)
Q Consensus         4 ea~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~   36 (187)
                      +..|.+|+.++..|....+.|..||..|+.++.
T Consensus        28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~   60 (70)
T 1gd2_E           28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVR   60 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567788999999999888888999998886554

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=86.26  E-value=1.2  Score=30.08  Aligned_cols=31  Identities=29%  Similarity=0.471  Sum_probs=22.0

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624          5 AHITHLNNEIAKLKTQVQQVIGENETLKAAL   35 (187)
Q Consensus         5 a~iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~   35 (187)
                      .++..|+.+...|+.+|..|+.|...|+..+
T Consensus        30 ~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l   60 (63)
T 2wt7_A           30 AETDQLEDEKSALQTEIANLLKEKEKLEFIL   60 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445777777777777777777777777655

>1tr2_A Vinculin isoform 1; actin-binding, cell adhesion; 2.90A {Homo sapiens} PDB: 1st6_A

Probab=84.58  E-value=1.8  Score=43.18  Aligned_cols=103  Identities=15%  Similarity=0.243  Sum_probs=70.6

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHhcc-CCCCCCccchHHHHHHHHHHHHhh---cCCCCCchHHHHH----HHHhhhhhHH
Q psy13624         82 QSEEVVRRTDQVTKRIQELAAHMRS-SDKCHSFVPHAERIRIAVSELSAI---FPQNTNNDLIRHA----LRSLNTSTVR  153 (187)
Q Consensus        82 ~~e~Vir~TE~vT~~IqeLl~aaq~-~~~~~~fvpcae~I~~AV~el~al---FP~~~~~e~vr~~----L~~L~~~a~~  153 (187)
                      ..+|+|+++..++.-.-++-..+.+ |+.+.+++.||..|..++.+|..+   |-..+.+..+|.-    ++.+..-...
T Consensus       915 ~~ndiI~~AK~ma~~m~~m~~~~~g~~~~~~d~i~~Ak~ia~~~~~l~~~~r~~a~~~~d~~~k~~ll~~~~~i~~~~~Q  994 (1066)
T 1tr2_A          915 KGNDIIAAAKRMALLMAEMSRLVRGGSGTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQ  994 (1066)
T ss_dssp             TTCHHHHHHHHHHHHHHTHHHHTSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTBCBHHHHHHHHHHHTHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhHHhHH
Confidence            4679999999999999888888873 334489999999999999888753   3333334454443    3333333323


Q ss_pred             HHHHhh--hh----H--------HhHHHHHHHHHHHHHHHHHhhh
Q psy13624        154 LQAECA--QL----E--------GSAERVRSCAYNMAKANKQLLT  184 (187)
Q Consensus       154 Lq~eC~--~~----q--------~~t~qv~~cAYdIAKAaK~LvT  184 (187)
                      |+-=+.  ..    +        -.++++++||=+++.+-+++|.
T Consensus       995 L~ils~VKa~~~g~~~~~~~~~~~a~~~Li~~aknLm~aV~~~V~ 1039 (1066)
T 1tr2_A          995 LKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVR 1039 (1066)
T ss_dssp             HHHHHHHHHHTSSCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            333221  11    1        2378999999999999999985

>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*

Probab=84.02  E-value=0.67  Score=35.61  Aligned_cols=23  Identities=26%  Similarity=0.372  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHh
Q psy13624         14 IAKLKTQVQQVIGENETLKAALN   36 (187)
Q Consensus        14 i~~Lq~~i~~L~~EN~~Lk~~~~   36 (187)
                      ..+|..++++|+-||..||.++.
T Consensus        10 ~EeLaaeL~kLqmENK~LKkkl~   32 (110)
T 2oa5_A           10 YEEMVKEVERLKLENKTLKQKVK   32 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            35788999999999999998774

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=82.71  E-value=2.3  Score=29.81  Aligned_cols=32  Identities=13%  Similarity=0.193  Sum_probs=27.7

Q ss_pred             HHhHHHHHHHHHHHHHHHHhhhHHHHHHHhhc
Q psy13624          7 ITHLNNEIAKLKTQVQQVIGENETLKAALNAR   38 (187)
Q Consensus         7 iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~~~~   38 (187)
                      |..|..++..|+.+++.|..+|..|+.++..-
T Consensus        49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L   80 (83)
T 1nkp_B           49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL   80 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55889999999999999999999999888654

>1qkr_A Vinculin, tail domain; actin cytoskeleton, cell adhesion, helical bundle, lipid binding; 1.8A {Gallus gallus} SCOP: a.24.9.1 PDB: 3h2u_A 3h2v_A 1rke_B 3myi_A

Probab=82.51  E-value=6.1  Score=32.56  Aligned_cols=103  Identities=12%  Similarity=0.173  Sum_probs=71.8

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHhccC-CCCCCccchHHHHHHHHHHHHh-------hcCCCCCchHHHHHHHHhhhhhHH
Q psy13624         82 QSEEVVRRTDQVTKRIQELAAHMRSS-DKCHSFVPHAERIRIAVSELSA-------IFPQNTNNDLIRHALRSLNTSTVR  153 (187)
Q Consensus        82 ~~e~Vir~TE~vT~~IqeLl~aaq~~-~~~~~fvpcae~I~~AV~el~a-------lFP~~~~~e~vr~~L~~L~~~a~~  153 (187)
                      ...|+|+.+..+..-.-++-...++. +.+.+++.||+.|..+..+|..       --|.......+-..|+.+..-...
T Consensus        37 ~~NdII~~Ak~Ma~~m~~M~~ftrG~g~t~~dlI~~Ak~iAe~~~~l~k~ar~iA~qc~D~~~k~~Ll~~~~rI~t~~~Q  116 (188)
T 1qkr_A           37 KGNDIIAAAKRMALLMAEMSRLVRGGSGNKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQ  116 (188)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhhHHHHH
Confidence            35678887766666666666666632 3347899999999888766653       335555566666667777777777


Q ss_pred             HHHHhh--hhH------------HhHHHHHHHHHHHHHHHHHhhh
Q psy13624        154 LQAECA--QLE------------GSAERVRSCAYNMAKANKQLLT  184 (187)
Q Consensus       154 Lq~eC~--~~q------------~~t~qv~~cAYdIAKAaK~LvT  184 (187)
                      |+-=|.  +..            ..++++|+||=++-.+-+++|.
T Consensus       117 LkIls~VKA~~~g~~~~~~~~~~~a~e~LIq~AkNLM~aV~~tVk  161 (188)
T 1qkr_A          117 LKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVR  161 (188)
T ss_dssp             HHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            776664  321            1278999999999999999885

>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1

Probab=81.80  E-value=1.4  Score=31.87  Aligned_cols=29  Identities=28%  Similarity=0.308  Sum_probs=25.7

Q ss_pred             HHhHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13624          7 ITHLNNEIAKLKTQVQQVIGENETLKAAL   35 (187)
Q Consensus         7 iq~l~~ei~~Lq~~i~~L~~EN~~Lk~~~   35 (187)
                      +.-|++.|..|...+.+|..||+-||.-.
T Consensus        17 VevLKe~I~EL~e~~~qLE~EN~~Lk~~a   45 (78)
T 1dip_A           17 VEILKEQIRELVEKNSQLERENTLLKTLA   45 (78)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            34799999999999999999999999644

>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A

Probab=81.69  E-value=0.33  Score=41.14  Aligned_cols=101  Identities=19%  Similarity=0.267  Sum_probs=65.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHH-------HHHHHHHhhcCCCCCchHHHHH-------HHHhh
Q psy13624         83 SEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIR-------IAVSELSAIFPQNTNNDLIRHA-------LRSLN  148 (187)
Q Consensus        83 ~e~Vir~TE~vT~~IqeLl~aaq~~~~~~~fvpcae~I~-------~AV~el~alFP~~~~~e~vr~~-------L~~L~  148 (187)
                      -|.|...|-.|.|.+-+|=.-++..+. +.|++|-..|.       .+|.++...||... -.+|.-+       ++.|.
T Consensus         8 nD~VY~att~VVKAV~~LSq~I~~a~p-eeYv~lVK~VGl~LR~LL~sVDel~~~Lp~Sa-~rEIEma~KvLnKDM~ELI   85 (215)
T 2l6f_A            8 NDKVYENVTGLVKAVIEMSSKIQPAPP-EEYVPMVKEVGLALRTLLATVDESLPVLPAST-HREIEMAQKLLNSDLAELI   85 (215)
Confidence            578888888888888888888887555 89999986554       45666667888544 1222222       33333


Q ss_pred             hhhHHHHHHhhhh-HH-hHHHHHHHHHHHHHHHHHhhhh
Q psy13624        149 TSTVRLQAECAQL-EG-SAERVRSCAYNMAKANKQLLTQ  185 (187)
Q Consensus       149 ~~a~~Lq~eC~~~-q~-~t~qv~~cAYdIAKAaK~LvT~  185 (187)
                      +.-...|.-|... +. .=.++...||-+|..+|.|+..
T Consensus        86 saMKLaqq~~~TtL~~EyRK~MLsaaH~LAmdaKNLlDv  124 (215)
T 2l6f_A           86 NKMKLAQQYVMTSLQQEYKKQMLTAAHALAVDAKNLLDV  124 (215)
Confidence            3333334333221 11 1246788999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	187
d1u89a1	138	Talin 1 {Mouse (Mus musculus) [TaxId: 10090]}	95.65
d2b0ha1	136	Talin 1 {Mouse (Mus musculus) [TaxId: 10090]}	94.72
d1sj8a2	125	Talin 1 {Mouse (Mus musculus) [TaxId: 10090]}	94.69
d1k04a_	142	FAT domain of focal adhesion kinase {Human (Homo s	93.31
d1sj8a2	125	Talin 1 {Mouse (Mus musculus) [TaxId: 10090]}	85.93
d1qkra_	181	Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}	85.73
d2oa5a1	96	Uncharacterized protein BQLF2 {Murid herpesvirus 4	82.09

>d1u89a1 a.216.1.1 (A:752-889) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: I/LWEQ domain
superfamily: I/LWEQ domain
family: I/LWEQ domain
domain: Talin 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.65  E-value=0.17  Score=37.25  Aligned_cols=102  Identities=15%  Similarity=0.161  Sum_probs=81.4

Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHhccCCC----CCCccchHHHHHHHHHHHHhhcCCCCCchHHHHHHHHhhhhhHHHHH
Q psy13624         81 PQSEEVVRRTDQVTKRIQELAAHMRSSDK----CHSFVPHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTSTVRLQA  156 (187)
Q Consensus        81 P~~e~Vir~TE~vT~~IqeLl~aaq~~~~----~~~fvpcae~I~~AV~el~alFP~~~~~e~vr~~L~~L~~~a~~Lq~  156 (187)
                      ...+++..-...|+..|.+|+.++.....    .+.|-...+.|..+..+|..   .....+.+..+-+....++..|-.
T Consensus        11 ~~~~~L~~AA~~v~~Al~dLl~~~~~~~~~~~~~~~~~~a~~~il~~~~~l~~---~~~~~~~li~aAk~va~a~~~Lv~   87 (138)
T d1u89a1          11 QLLRGVGAAATAVTQALNELLQHVKAHATGAGPAGRYDQATDTILTVTENIFS---SMGDAGEMVRQARILAQATSDLVN   87 (138)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHHHTTSSCCSSSCSCCHHHHHHHHHHHHHHHH---TTTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccHhHHHHHHHHHHHHHhh---ccCCHHHHHHHHHHHHHHHHHHHH
Confidence            34678888999999999999999886432    25677777888877777655   556778888899999999999888


Q ss_pred             HhhhhHH------hHHHHHHHHHHHHHHHHHhhhh
Q psy13624        157 ECAQLEG------SAERVRSCAYNMAKANKQLLTQ  185 (187)
Q Consensus       157 eC~~~q~------~t~qv~~cAYdIAKAaK~LvT~  185 (187)
                      -++....      .-++|+.+|-+||+++-+||..
T Consensus        88 aak~~a~~~~d~~~q~~li~aA~~va~~t~qLV~a  122 (138)
T d1u89a1          88 AIKADAEGESDLENSRKLLSAAKILADATAKMVEA  122 (138)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8865522      3678999999999999999863

>d2b0ha1 a.24.9.2 (A:1838-1973) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: alpha-catenin/vinculin-like
family: VBS domain
domain: Talin 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.72  E-value=0.05  Score=39.68  Aligned_cols=104  Identities=15%  Similarity=0.262  Sum_probs=79.5

Q ss_pred             CCChhhHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHHHHHHHHH-------hhcCCCCCchHHHHHHHHhhhhhH
Q psy13624         80 MPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELS-------AIFPQNTNNDLIRHALRSLNTSTV  152 (187)
Q Consensus        80 ~P~~e~Vir~TE~vT~~IqeLl~aaq~~~~~~~fvpcae~I~~AV~el~-------alFP~~~~~e~vr~~L~~L~~~a~  152 (187)
                      .-+.|+++..+..|....++|+.++...  .+.....+..+-.+...|+       +..+..-..+.|..+.+.+..++.
T Consensus        14 ~~~Q~~~~~~ak~l~~~~~~lv~~a~~~--~~~L~~~a~~~a~~~~~L~~~~k~~A~~~~~~~~q~~ll~~ak~v~~s~~   91 (136)
T d2b0ha1          14 VDYQTTMVRTAKAIAVTVQEMVTKSNTS--PEELGPLANQLTSDYGRLASQAKPAAVAAENEEIGAHIKHRVQELGHGCS   91 (136)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTTC--SSTHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            3457889999999999999999999873  3566666665555544443       333322266779999999999999


Q ss_pred             HHHHHhhhhH------HhHHHHHHHHHHHHHHHHHhhhh
Q psy13624        153 RLQAECAQLE------GSAERVRSCAYNMAKANKQLLTQ  185 (187)
Q Consensus       153 ~Lq~eC~~~q------~~t~qv~~cAYdIAKAaK~LvT~  185 (187)
                      .|-..|+...      ..-+++..+|=+|+.+..+||..
T Consensus        92 ~Lv~aak~~~~nP~d~~~~~~L~~aAr~V~esv~~Ll~a  130 (136)
T d2b0ha1          92 ALVTKAGALQCSPSDVYTKKELIECARRVSEKVSHVLAA  130 (136)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999997763      24688999999999999999975

>d1sj8a2 a.216.1.1 (A:658-782) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: I/LWEQ domain
superfamily: I/LWEQ domain
family: I/LWEQ domain
domain: Talin 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.69  E-value=0.098  Score=37.63  Aligned_cols=103  Identities=15%  Similarity=0.106  Sum_probs=79.4

Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHhcc-------CCCCCCccchHHHHHHHHHHHHh------hcCCCCC-chHHHHHHHH
Q psy13624         81 PQSEEVVRRTDQVTKRIQELAAHMRS-------SDKCHSFVPHAERIRIAVSELSA------IFPQNTN-NDLIRHALRS  146 (187)
Q Consensus        81 P~~e~Vir~TE~vT~~IqeLl~aaq~-------~~~~~~fvpcae~I~~AV~el~a------lFP~~~~-~e~vr~~L~~  146 (187)
                      -+.|.++.....|+..++.|+..++.       +..+...+.+++.|-.+...|..      -+|.+|. .+.+..+-+.
T Consensus         6 ~~~e~Li~~AK~va~a~~~Lv~~ak~~a~~~~d~~~q~~Li~aa~~v~~~t~qLv~~aK~~a~~~~d~~~q~~L~~aak~   85 (125)
T d1sj8a2           6 HFQDVLMQLANAVASAAAALVLKAKSVAQRTEDSGLQTQVIAAATQCALSTSQLVACTKVVAPTISSPVCQEQLVEAGRL   85 (125)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            45788999999999999999998866       22335678888888877666543      4777773 3568888888


Q ss_pred             hhhhhHHHHHHhhhh---HHhHHHHHHHHHHHHHHHHHhh
Q psy13624        147 LNTSTVRLQAECAQL---EGSAERVRSCAYNMAKANKQLL  183 (187)
Q Consensus       147 L~~~a~~Lq~eC~~~---q~~t~qv~~cAYdIAKAaK~Lv  183 (187)
                      +..+...|..-|+..   ...++.+...|..|..+.-+||
T Consensus        86 V~~a~~~Lv~a~~~a~~~~~~~~~l~~aa~~v~~~l~~Ll  125 (125)
T d1sj8a2          86 VAKAVEGCVSASQAATEDGQLLRGVGAAATAVTQALNELL  125 (125)
T ss_dssp             HHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHHHHHHhhC
Confidence            999999999888655   3357888888888888888775

>d1k04a_ a.24.14.1 (A:) FAT domain of focal adhesion kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: FAT domain of focal adhesion kinase
family: FAT domain of focal adhesion kinase
domain: FAT domain of focal adhesion kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.31  E-value=0.4  Score=36.39  Aligned_cols=102  Identities=20%  Similarity=0.299  Sum_probs=77.9

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHHHH-------HHHHHhhcCCCCCchHHHHHHHHhhhhhHHH
Q psy13624         82 QSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIA-------VSELSAIFPQNTNNDLIRHALRSLNTSTVRL  154 (187)
Q Consensus        82 ~~e~Vir~TE~vT~~IqeLl~aaq~~~~~~~fvpcae~I~~A-------V~el~alFP~~~~~e~vr~~L~~L~~~a~~L  154 (187)
                      +.|.|.++|-.|.+.+-+|=...+.. +.+.|++|-..|..+       |.++..+||... -.+|.-+=+.|+..-..|
T Consensus        13 t~D~Vy~~t~~VVkaV~~ls~~v~~~-~~~~Y~~lVK~VG~~Lr~Ll~svD~~~~~lp~~~-~~eIema~klLskDm~eL   90 (142)
T d1k04a_          13 SNDKVYENVTGLVKAVIEMSSKIQPA-PPEEYVPMVKEVGLALRTLLATVDETIPLLPAST-HREIEMAQKLLNSDLGEL   90 (142)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHSCC-CGGGHHHHHHHHHHHHHHHHHHHHHHGGGSCHHH-HHHHHHHHHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHhhc-CchHHHHHHHHHHHHHHHHHHHHHHHhccCcHHH-hHHHHHHHHHHHHHHHHH
Confidence            46889999999999999999999986 669999999888765       455566787665 566777777777665555


Q ss_pred             HHHhhhhHH---------hHHHHHHHHHHHHHHHHHhhhh
Q psy13624        155 QAECAQLEG---------SAERVRSCAYNMAKANKQLLTQ  185 (187)
Q Consensus       155 q~eC~~~q~---------~t~qv~~cAYdIAKAaK~LvT~  185 (187)
                      ...=+-+|.         .=.++...||-+|.=||.|+.-
T Consensus        91 i~~MklAqq~~~ttl~~eyrr~MLsaaH~LA~DaKnLlD~  130 (142)
T d1k04a_          91 INKMKLAQQYVMTSLQQEYKKQMLTAAHALAVDAKNLLDV  130 (142)
T ss_dssp             HHHHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            444433322         3667889999999999999864

>d1sj8a2 a.216.1.1 (A:658-782) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: I/LWEQ domain
superfamily: I/LWEQ domain
family: I/LWEQ domain
domain: Talin 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.93  E-value=1.3  Score=31.33  Aligned_cols=74  Identities=16%  Similarity=0.080  Sum_probs=56.3

Q ss_pred             CCccchHHHHHHHHHHHHhh------cCCCC-CchHHHHHHHHhhhhhHHHHHHhhhh------HHhHHHHHHHHHHHHH
Q psy13624        111 HSFVPHAERIRIAVSELSAI------FPQNT-NNDLIRHALRSLNTSTVRLQAECAQL------EGSAERVRSCAYNMAK  177 (187)
Q Consensus       111 ~~fvpcae~I~~AV~el~al------FP~~~-~~e~vr~~L~~L~~~a~~Lq~eC~~~------q~~t~qv~~cAYdIAK  177 (187)
                      +.++..|..|..++..|+.-      .|.++ ..+.|=.+.+.....+..|-..|+..      ...-+++.++|=+|+.
T Consensus         9 e~Li~~AK~va~a~~~Lv~~ak~~a~~~~d~~~q~~Li~aa~~v~~~t~qLv~~aK~~a~~~~d~~~q~~L~~aak~V~~   88 (125)
T d1sj8a2           9 DVLMQLANAVASAAAALVLKAKSVAQRTEDSGLQTQVIAAATQCALSTSQLVACTKVVAPTISSPVCQEQLVEAGRLVAK   88 (125)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTSCTTSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence            34555566666666555422      35555 78999999999999999999999776      2235789999999999


Q ss_pred             HHHHhhh
Q psy13624        178 ANKQLLT  184 (187)
Q Consensus       178 AaK~LvT  184 (187)
                      |+..||.
T Consensus        89 a~~~Lv~   95 (125)
T d1sj8a2          89 AVEGCVS   95 (125)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999986

>d1qkra_ a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: alpha-catenin/vinculin-like
family: alpha-catenin/vinculin
domain: Vinculin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=85.73  E-value=1.2  Score=34.36  Aligned_cols=84  Identities=12%  Similarity=0.156  Sum_probs=56.9

Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHhccCCCCCCccchHHHHHHHHHHHHhhcCCCCCchHHHHHHHHhhhhhHHHHHHh--
Q psy13624         81 PQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTSTVRLQAEC--  158 (187)
Q Consensus        81 P~~e~Vir~TE~vT~~IqeLl~aaq~~~~~~~fvpcae~I~~AV~el~alFP~~~~~e~vr~~L~~L~~~a~~Lq~eC--  158 (187)
                      |..+++|...+.|...-..|...++                    .++.--|.....+.+..++.++...+..|..-|  
T Consensus        62 ~~k~dLI~aAK~iA~a~~~L~~~Ar--------------------~iA~~c~D~~~k~~Li~~a~~i~~~ttQL~i~skV  121 (181)
T d1qkra_          62 GNKRALIQCAKDIAKASDEVTRLAK--------------------EVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTV  121 (181)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHCCCHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666666665555555555444                    234444444456778888888888888888766  


Q ss_pred             hhh------------HHhHHHHHHHHHHHHHHHHHhhh
Q psy13624        159 AQL------------EGSAERVRSCAYNMAKANKQLLT  184 (187)
Q Consensus       159 ~~~------------q~~t~qv~~cAYdIAKAaK~LvT  184 (187)
                      ++.            ..+++++|++|=++.+|.+++|.
T Consensus       122 KA~~~~~~~~~~~~~~~a~e~LI~aAkNLm~aV~~tV~  159 (181)
T d1qkra_         122 KATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVR  159 (181)
T ss_dssp             HHHHTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            322            13588999999999999999985

>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid herpesvirus 4 [TaxId: 33708]}

class: Alpha and beta proteins (a+b)
fold: BLRF2-like
superfamily: BLRF2-like
family: BLRF2-like
domain: Uncharacterized protein BQLF2
species: Murid herpesvirus 4 [TaxId: 33708]

Probab=82.09  E-value=0.39  Score=34.30  Aligned_cols=23  Identities=26%  Similarity=0.398  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHhh
Q psy13624         15 AKLKTQVQQVIGENETLKAALNA   37 (187)
Q Consensus        15 ~~Lq~~i~~L~~EN~~Lk~~~~~   37 (187)
                      ..|..++++|+-||..||+++..
T Consensus         5 EeLaaeL~rL~~ENk~LKkkl~~   27 (96)
T d2oa5a1           5 EEMVKEVERLKLENKTLKQKVKS   27 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence            47889999999999999987743