Psyllid ID: psy13625

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320--
MHPLFTDQHSAYYRHNPAHHNSSYSVNSSNQIPPSYYEHYSRYSAYTSSPYSQQMVAGKDMVKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECFVKIPRDDKKPGKGSYWTLDPDSYNMFDNGSYLRRRRRFKKKDVMKEKEEAIKRQHVHQAHLLQQENILKKAEEKLMSIKELKPCKREPSNNLSSSCMGGSHLDIKPNTGDQMDILATDLVMGQHSNYRHYYQSFGEDSTGTTGSNRHHWYSSDHAAIPGSGPPVDIFESATIPGNANCQIGFRSAPTVVHYYQHQHDISKY
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccccHHHHHHcccccccccccccccccccccccccccccccHHHcccccHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHccccHHHHHHccccccccEEEEcccccccccccEEEEccccccccccccHHHHHHcccccccHHcccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccc
mhplftdqhsayyrhnpahhnssysvnssnqippsyyehysrysaytsspysqqmvagkdmvkppySYIALIAMAIQnapdkrctlNGIYQFIMERfpyyrenkqgwqnsirhnlslnecfvkiprddkkpgkgsywtldpdsynmfdngsylrrrrrfkKKDVMKEKEEAIKRQHVHQAHLLQQENILKKAEEKLMSIkelkpckrepsnnlssscmggshldikpntgdqmDILATDLvmgqhsnyrhyyqsfgedstgttgsnrhhwyssdhaaipgsgppvdifesatipgnancqigfrsaptvvHYYQHQHDISKY
MHPLFTDQHSAYYRHNPAHHNSSYSVNSSNQIPPSYYEHYSRYSAYTSSPYSQQMVAGKDMVKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECFVKiprddkkpgkgsywtldpdsynmfdngsylrrrrrfkKKDVMKEKEEAIkrqhvhqahllqqeNILKKAEEKLMSIkelkpckrepsnnlssscmggSHLDIKPNTGDQMDILATDLVMGQHSNYRHYYQSFGEDSTGTTGSNRHHWYSSDHAAIPGSGPPVDIFESATIPGNANCQIGFRSAPTVVHYYQHQHDISKY
MHPLFTDQHSAYYRHNPAHHnssysvnssnQIPPSYYEHYSRYSAYTSSPYSQQMVAGKDMVKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECFVKIPRDDKKPGKGSYWTLDPDSYNMFDNGSYLRRRRRFKKKDVMKEKEEAIKRQHVHQAHLLQQENILKKAEEKLMSIKELKPCKREPSNNLSSSCMGGSHLDIKPNTGDQMDILATDLVMGQHSNYRHYYQSFGEDSTGTTGSNRHHWYSSDHAAIPGSGPPVDIFESATIPGNANCQIGFRSAPTVVHYYQHQHDISKY
***********************************YYEHYSRYSAYT*******MVAGKDMVKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECFVKIPR********SYWTLD********************************************************************************************MDILATDLVMGQHSNYRHYYQSFG************HWYS***********PVDIFESATIPGNANCQIGFRSAPTVVHYYQH*******
******************************************************************SYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECFVKIPRDDKKPGKGSYWTLDPDSYNMFDNGSYL************************************************************************************************************************************************************VHYYQH*******
MHPLFTDQHSAYYRHNPAHHNSSYSVNSSNQIPPSYYEHYSRYSAYTSSPYSQQMVAGKDMVKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECFVKIPRDDKKPGKGSYWTLDPDSYNMFDNGSYLRRRRRFK*************RQHVHQAHLLQQENILKKAEEKLMSIKELKPC***********CMGGSHLDIKPNTGDQMDILATDLVMGQHSNYRHYYQSFGE********NRHHWYSSDHAAIPGSGPPVDIFESATIPGNANCQIGFRSAPTVVHYYQHQHDISKY
*********************************************************GKDMVKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECFVKIPRDDKKPGKGSYWTLDPDSYNMFDNGSYLRRRRRFKK*********************************************************************************************************************PGSGPPVDIFE*******ANCQIGFRSAPTVVHYYQHQHDISKY
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MHPLFTDQHSAYYRHNPAHHNSSYSVNSSNQIPPSYYEHYSRYSAYTSSPYSQQMVAGKDMVKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECFVKIPRDDKKPGKGSYWTLDPDSYNMFDNGSYLRRRRRFKKKDVMKEKEEAIKRQHVHQAHxxxxxxxxxxxxxxxxxxxxxKPCKREPSNNLSSSCMGGSHLDIKPNTGDQMDILATDLVMGQHSNYRHYYQSFGEDSTGTTGSNRHHWYSSDHAAIPGSGPPVDIFESATIPGNANCQIGFRSAPTVVHYYQHQHDISKY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query322 2.2.26 [Sep-21-2011]
P32027 508 Fork head domain-containi yes N/A 0.664 0.421 0.562 5e-60
Q61850 494 Forkhead box protein C2 O yes N/A 0.431 0.281 0.760 1e-57
Q99958 501 Forkhead box protein C2 O yes N/A 0.437 0.281 0.75 3e-57
Q6NVT7 464 Forkhead box protein C2 O yes N/A 0.428 0.297 0.776 5e-57
Q9PVY8 461 Forkhead box protein C2-B N/A N/A 0.621 0.433 0.6 6e-57
Q9DE25 476 Forkhead box C1-A OS=Dani yes N/A 0.437 0.296 0.741 9e-57
Q61572 553 Forkhead box protein C1 O no N/A 0.447 0.260 0.746 2e-56
Q12948 553 Forkhead box protein C1 O no N/A 0.422 0.245 0.781 4e-56
Q9PVZ3 492 Forkhead box protein C1-A N/A N/A 0.431 0.282 0.751 1e-55
Q32NP8 495 Forkhead box protein C1-B N/A N/A 0.431 0.280 0.75 2e-55
>sp|P32027|CROC_DROME Fork head domain-containing protein crocodile OS=Drosophila melanogaster GN=croc PE=2 SV=2 Back     alignment and function desciption
 Score =  231 bits (590), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 135/240 (56%), Positives = 164/240 (68%), Gaps = 26/240 (10%)

Query: 1   MHPLFTDQHS--AYYRHNPAHHNSSYSVNSSNQIPPSYYEHYSRYSAYTSSPYSQQMVA- 57
           MH LF+DQ+S   +Y    A + S+ +V +++    +   HY+ Y  Y+  PYS      
Sbjct: 1   MHTLFSDQNSFTRHYAQTAAGYGSASAVAAASSASAAAAAHYA-YDQYSRYPYSASAYGL 59

Query: 58  -----GKDMVKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIR 112
                 K++VKPPYSYIALIAMAIQNA DK+ TLNGIYQ+IMERFPYYR+NKQGWQNSIR
Sbjct: 60  GAPHQNKEIVKPPYSYIALIAMAIQNAADKKVTLNGIYQYIMERFPYYRDNKQGWQNSIR 119

Query: 113 HNLSLNECFVKIPRDDKKPGKGSYWTLDPDSYNMFDNGSYLRRRRRFKKKDVMKEKEEAI 172
           HNLSLNECFVK+ RDDKKPGKGSYWTLDPDSYNMFDNGS+LRRRRRFKKKDVM+EKEEAI
Sbjct: 120 HNLSLNECFVKVARDDKKPGKGSYWTLDPDSYNMFDNGSFLRRRRRFKKKDVMREKEEAI 179

Query: 173 KRQHVHQAHLLQQENILKKAEEKLMSIKELKPC---------KREPSNNLSSSCMGGSHL 223
           KRQ       +  E + +    KLM+   L+           K+EP  +L   C+ G  +
Sbjct: 180 KRQ------AMMNEKLAEMKPLKLMTNGILEAKHMAAHAAHFKKEPLMDL--GCLSGKEV 231
Required for the establishment of head structures. Required to function as an early patterning gene in the anterior-most blastoderm head segment anlage and for the establishment of a specific head skeletal structure that derives from the non-adjacent intercalary segment at a later stage of embryogenesis. Binds the consensus DNA sequence 5'-[AG]TAAA[TC]A-3'.
Drosophila melanogaster (taxid: 7227)
>sp|Q61850|FOXC2_MOUSE Forkhead box protein C2 OS=Mus musculus GN=Foxc2 PE=2 SV=2 Back     alignment and function description
>sp|Q99958|FOXC2_HUMAN Forkhead box protein C2 OS=Homo sapiens GN=FOXC2 PE=1 SV=1 Back     alignment and function description
>sp|Q6NVT7|FOXC2_XENTR Forkhead box protein C2 OS=Xenopus tropicalis GN=foxc2 PE=2 SV=2 Back     alignment and function description
>sp|Q9PVY8|FXC2B_XENLA Forkhead box protein C2-B OS=Xenopus laevis GN=foxc2-b PE=2 SV=2 Back     alignment and function description
>sp|Q9DE25|FXC1A_DANRE Forkhead box C1-A OS=Danio rerio GN=foxc1a PE=2 SV=1 Back     alignment and function description
>sp|Q61572|FOXC1_MOUSE Forkhead box protein C1 OS=Mus musculus GN=Foxc1 PE=2 SV=3 Back     alignment and function description
>sp|Q12948|FOXC1_HUMAN Forkhead box protein C1 OS=Homo sapiens GN=FOXC1 PE=1 SV=3 Back     alignment and function description
>sp|Q9PVZ3|FXC1A_XENLA Forkhead box protein C1-A OS=Xenopus laevis GN=foxc1-a PE=2 SV=1 Back     alignment and function description
>sp|Q32NP8|FXC1B_XENLA Forkhead box protein C1-B OS=Xenopus laevis GN=foxc1-b PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query322
345496496 503 PREDICTED: hypothetical protein LOC10011 0.661 0.423 0.607 3e-69
189235432342 PREDICTED: similar to forkhead protein/ 0.894 0.842 0.498 7e-68
340716210 491 PREDICTED: hypothetical protein LOC10064 0.736 0.482 0.578 4e-66
350396947 491 PREDICTED: hypothetical protein LOC10074 0.661 0.433 0.617 7e-66
380018220 494 PREDICTED: uncharacterized protein LOC10 0.661 0.431 0.622 9e-66
322786614 499 hypothetical protein SINV_12552 [Solenop 0.664 0.428 0.606 1e-65
110758357 495 PREDICTED: hypothetical protein LOC72596 0.658 0.428 0.626 2e-65
332016884 495 Fork head domain-containing protein croc 0.664 0.432 0.602 5e-65
383853178 489 PREDICTED: uncharacterized protein LOC10 0.661 0.435 0.619 6e-65
307175174 490 Fork head domain-containing protein croc 0.658 0.432 0.599 3e-64
>gi|345496496|ref|XP_001601800.2| PREDICTED: hypothetical protein LOC100117617 [Nasonia vitripennis] Back     alignment and taxonomy information
 Score =  268 bits (685), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 150/247 (60%), Positives = 171/247 (69%), Gaps = 34/247 (13%)

Query: 1   MHPLFTDQHSAYYRHNPA----HHNSSY-SVNSSNQIPPSYYEHYSRYSAYTSSP----- 50
           MH LF++Q+ AYYRH  A        SY SV ++    PSYYE   RY  Y ++      
Sbjct: 1   MHTLFSEQN-AYYRHATAVPMGMGTPSYPSVGAA----PSYYEAQYRYGGYATAAGYPVT 55

Query: 51  -YSQQMV--AGKDMVKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGW 107
             SQQ +   GKDMVKPPYSYIALI MAIQNAPDK+ TLNGIYQFIMERFPYYRENKQGW
Sbjct: 56  GISQQHIHHPGKDMVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMERFPYYRENKQGW 115

Query: 108 QNSIRHNLSLNECFVKIPRDDKKPGKGSYWTLDPDSYNMFDNGSYLRRRRRFKKKDVMKE 167
           QNSIRHNLSLNECFVK+PRDDKKPGKGSYW+LDPDSYNMFDNGSYLRRRRRFKK+D +KE
Sbjct: 116 QNSIRHNLSLNECFVKVPRDDKKPGKGSYWSLDPDSYNMFDNGSYLRRRRRFKKQDALKE 175

Query: 168 KEEAIKRQHVHQAHLLQQENILKKA--------------EEKLMSIKELKPCKREPSN-- 211
           KEEA+KRQ +  A   Q+ +  K +              + KL+    L   KREP N  
Sbjct: 176 KEEALKRQGLLPATAKQRLDETKSSLNIALQSSASDSVGKSKLLDQSGLCKPKREPLNDP 235

Query: 212 NLSSSCM 218
           N +S CM
Sbjct: 236 NSASHCM 242

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|189235432|ref|XP_001812698.1| PREDICTED: similar to forkhead protein/ forkhead protein domain [Tribolium castaneum] gi|270003561|gb|EFA00009.1| hypothetical protein TcasGA2_TC002813 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|340716210|ref|XP_003396593.1| PREDICTED: hypothetical protein LOC100648711 [Bombus terrestris] Back     alignment and taxonomy information
>gi|350396947|ref|XP_003484717.1| PREDICTED: hypothetical protein LOC100740124 [Bombus impatiens] Back     alignment and taxonomy information
>gi|380018220|ref|XP_003693032.1| PREDICTED: uncharacterized protein LOC100870063 [Apis florea] Back     alignment and taxonomy information
>gi|322786614|gb|EFZ13009.1| hypothetical protein SINV_12552 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|110758357|ref|XP_001121752.1| PREDICTED: hypothetical protein LOC725966 [Apis mellifera] Back     alignment and taxonomy information
>gi|332016884|gb|EGI57693.1| Fork head domain-containing protein crocodile [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|383853178|ref|XP_003702100.1| PREDICTED: uncharacterized protein LOC100879032 [Megachile rotundata] Back     alignment and taxonomy information
>gi|307175174|gb|EFN65267.1| Fork head domain-containing protein crocodile [Camponotus floridanus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query322
FB|FBgn0014143 508 croc "crocodile" [Drosophila m 0.680 0.431 0.561 9.8e-66
UNIPROTKB|Q9PVY9 465 foxc2-a "Forkhead box protein 0.639 0.443 0.584 3.7e-64
UNIPROTKB|Q6NVT7 464 foxc2 "Forkhead box protein C2 0.652 0.452 0.584 7.7e-64
UNIPROTKB|F1NK00 467 Gga.51501 "Uncharacterized pro 0.518 0.357 0.676 2.9e-62
UNIPROTKB|Q99958 501 FOXC2 "Forkhead box protein C2 0.431 0.277 0.769 3.7e-62
MGI|MGI:1347481 494 Foxc2 "forkhead box C2" [Mus m 0.431 0.281 0.760 2.6e-61
UNIPROTKB|F1MVT0 502 FOXC2 "Uncharacterized protein 0.431 0.276 0.762 3.3e-61
UNIPROTKB|E2QSH3 505 FOXC2 "Uncharacterized protein 0.431 0.275 0.762 5.4e-61
UNIPROTKB|F1NK01 444 Gga.51501 "Uncharacterized pro 0.444 0.322 0.743 6.1e-60
UNIPROTKB|Q9PVZ3 492 foxc1-a "Forkhead box protein 0.624 0.408 0.570 7.8e-60
FB|FBgn0014143 croc "crocodile" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 639 (230.0 bits), Expect = 9.8e-66, Sum P(2) = 9.8e-66
 Identities = 132/235 (56%), Positives = 157/235 (66%)

Query:     1 MHPLFTDQHS--AYYRHNPAHHXXXXXXXXXXQIPPSYYEHYSRYSAYTSSPYSQQMVA- 57
             MH LF+DQ+S   +Y    A +              +   HY+ Y  Y+  PYS      
Sbjct:     1 MHTLFSDQNSFTRHYAQTAAGYGSASAVAAASSASAAAAAHYA-YDQYSRYPYSASAYGL 59

Query:    58 -----GKDMVKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIR 112
                   K++VKPPYSYIALIAMAIQNA DK+ TLNGIYQ+IMERFPYYR+NKQGWQNSIR
Sbjct:    60 GAPHQNKEIVKPPYSYIALIAMAIQNAADKKVTLNGIYQYIMERFPYYRDNKQGWQNSIR 119

Query:   113 HNLSLNECFVKIPRDDKKPGKGSYWTLDPDSYNMFDNGSYLRRRRRFKKKDVMKEKEEAI 172
             HNLSLNECFVK+ RDDKKPGKGSYWTLDPDSYNMFDNGS+LRRRRRFKKKDVM+EKEEAI
Sbjct:   120 HNLSLNECFVKVARDDKKPGKGSYWTLDPDSYNMFDNGSFLRRRRRFKKKDVMREKEEAI 179

Query:   173 KRQHVHQAHLLQQENILKKAEEKLMSIKELKP----CKREPSNNLSSSCMGGSHL 223
             KRQ +    L + +  LK     ++  K +       K+EP  +L   C+ G  +
Sbjct:   180 KRQAMMNEKLAEMKP-LKLMTNGILEAKHMAAHAAHFKKEPLMDLG--CLSGKEV 231
GO:0005634 "nucleus" evidence=NAS;IDA
GO:0007380 "specification of segmental identity, head" evidence=NAS;IMP
GO:0003677 "DNA binding" evidence=NAS;IDA
GO:0043565 "sequence-specific DNA binding" evidence=IEA
GO:0003690 "double-stranded DNA binding" evidence=IBA
GO:0008134 "transcription factor binding" evidence=IBA
GO:0009888 "tissue development" evidence=IBA
GO:0009653 "anatomical structure morphogenesis" evidence=IBA
GO:0048513 "organ development" evidence=IBA
GO:0051090 "regulation of sequence-specific DNA binding transcription factor activity" evidence=IBA
GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IBA
GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IBA
GO:0005667 "transcription factor complex" evidence=IBA
GO:0008301 "DNA binding, bending" evidence=IBA
UNIPROTKB|Q9PVY9 foxc2-a "Forkhead box protein C2-A" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q6NVT7 foxc2 "Forkhead box protein C2" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|F1NK00 Gga.51501 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q99958 FOXC2 "Forkhead box protein C2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1347481 Foxc2 "forkhead box C2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1MVT0 FOXC2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QSH3 FOXC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1NK01 Gga.51501 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q9PVZ3 foxc1-a "Forkhead box protein C1-A" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q61850FOXC2_MOUSENo assigned EC number0.76050.43160.2813yesN/A
Q9DE25FXC1A_DANRENo assigned EC number0.74140.43780.2962yesN/A
Q99958FOXC2_HUMANNo assigned EC number0.750.43780.2814yesN/A
P32027CROC_DROMENo assigned EC number0.56250.66450.4212yesN/A
Q6NVT7FOXC2_XENTRNo assigned EC number0.77690.42850.2974yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query322
pfam0025096 pfam00250, Fork_head, Fork head domain 4e-61
smart0033989 smart00339, FH, FORKHEAD 3e-53
cd0005978 cd00059, FH, Forkhead (FH), also known as a "winge 4e-51
COG5025610 COG5025, COG5025, Transcription factor of the Fork 2e-17
COG5025 610 COG5025, COG5025, Transcription factor of the Fork 4e-15
>gnl|CDD|189470 pfam00250, Fork_head, Fork head domain Back     alignment and domain information 
 Score =  189 bits (482), Expect = 4e-61
 Identities = 72/96 (75%), Positives = 85/96 (88%)

Query: 63  KPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECFV 122
           KPPYSYIALI MAIQ +P+K  TL+ IYQ+IM+ FPYYR+NKQGWQNSIRHNLSLN+CF+
Sbjct: 1   KPPYSYIALITMAIQQSPEKMLTLSEIYQWIMDLFPYYRQNKQGWQNSIRHNLSLNKCFI 60

Query: 123 KIPRDDKKPGKGSYWTLDPDSYNMFDNGSYLRRRRR 158
           K+PR   KPGKGSYWTLDP+S NMF+NG YL+RR+R
Sbjct: 61  KVPRSPDKPGKGSYWTLDPESENMFENGKYLKRRKR 96

Length = 96
>gnl|CDD|214627 smart00339, FH, FORKHEAD Back     alignment and domain information
>gnl|CDD|238016 cd00059, FH, Forkhead (FH), also known as a "winged helix" Back     alignment and domain information
>gnl|CDD|227358 COG5025, COG5025, Transcription factor of the Forkhead/HNF3 family [Transcription] Back     alignment and domain information
>gnl|CDD|227358 COG5025, COG5025, Transcription factor of the Forkhead/HNF3 family [Transcription] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 322
KOG3563|consensus454 100.0
PF0025096 Fork_head: Fork head domain; InterPro: IPR001766 T 100.0
cd0005978 FH Forkhead (FH), also known as a "winged helix". 100.0
KOG3562|consensus277 100.0
smart0033989 FH FORKHEAD. FORKHEAD, also known as a "winged hel 100.0
KOG2294|consensus454 100.0
KOG4385|consensus581 99.86
COG5025610 Transcription factor of the Forkhead/HNF3 family [ 99.84
COG5025 610 Transcription factor of the Forkhead/HNF3 family [ 99.46
PF0053877 Linker_histone: linker histone H1 and H5 family; I 94.75
smart0052666 H15 Domain in histone families 1 and 5. 91.81
cd0007388 H15 linker histone 1 and histone 5 domains; the ba 90.09
PF0506672 HARE-HTH: HB1, ASXL, restriction endonuclease HTH 80.75
>KOG3563|consensus Back     alignment and domain information 
Probab=100.00  E-value=7.3e-42  Score=330.86  Aligned_cols=103  Identities=67%  Similarity=1.198  Sum_probs=100.8

Q ss_pred             CCCCCChHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCccccCCCCccccccccccccccccccccCCCCCCCceeeEeC
Q psy13625         61 MVKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECFVKIPRDDKKPGKGSYWTLD  140 (322)
Q Consensus        61 ~~KPPySYa~LIa~AI~sSp~krLTL~EIYewI~~~fPYYr~~~~GWKNSIRHNLSLnkcFvKVpR~~~~pGKGs~Wtld  140 (322)
                      -.||||||+.||+|||+.+|.|+|||+|||+||++.|||||.+.+.|||||||.||+|+||+||+|..++||||+||+|+
T Consensus       171 haKPPYSYISLITMAIQ~~pskmLTLSEIYqwIMDLFPyYrqNQQRWQNSIRHSLSFNDCFVKVaRSPDKPGKGSfWTLH  250 (454)
T KOG3563|consen  171 HAKPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSFWTLH  250 (454)
T ss_pred             CCCCChhHHHHHHHHHHhCCccceeHHHHHHHHHHhhhHhhhhHHHHHhhhhhhccccceeeeccCCCCCCCCccceeec
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccCCchhhhhhccchhh
Q psy13625        141 PDSYNMFDNGSYLRRRRRFKKKD  163 (322)
Q Consensus       141 Pe~~~~f~~g~~~RrRkr~k~k~  163 (322)
                      |++.+||++|+|+||+||||+++
T Consensus       251 pdsGNMFENGCYLRRQKRFK~ek  273 (454)
T KOG3563|consen  251 PDSGNMFENGCYLRRQKRFKCEK  273 (454)
T ss_pred             CCcCcccccchhehhhhhhhhhh
Confidence            99999999999999999999864

>PF00250 Fork_head: Fork head domain; InterPro: IPR001766 The fork head protein of Drosophila melanogaster, a transcription factor that promotes terminal rather than segmental development, contains neither homeodomains nor zinc-fingers characteristic of other transcription factors [] Back     alignment and domain information
>cd00059 FH Forkhead (FH), also known as a "winged helix" Back     alignment and domain information
>KOG3562|consensus Back     alignment and domain information
>smart00339 FH FORKHEAD Back     alignment and domain information
>KOG2294|consensus Back     alignment and domain information
>KOG4385|consensus Back     alignment and domain information
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription] Back     alignment and domain information
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription] Back     alignment and domain information
>PF00538 Linker_histone: linker histone H1 and H5 family; InterPro: IPR005818 Histone proteins have central roles in both chromatin organisation (as structural units of the nucleosome) and gene regulation (as dynamic components that have a direct impact on DNA transcription and replication) Back     alignment and domain information
>smart00526 H15 Domain in histone families 1 and 5 Back     alignment and domain information
>cd00073 H15 linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated proteins that bind to the exterior of nucleosomes and dramatically stabilize the highly condensed states of chromatin fibers; stabilization of higher order folding occurs through electrostatic neutralization of the linker DNA segments, through a highly positively charged carboxy- terminal domain known as the AKP helix (Ala, Lys, Pro); thought to be involved in specific protein-protein and protein-DNA interactions and play a role in suppressing core histone tail domain acetylation in the chromatin fiber Back     alignment and domain information
>PF05066 HARE-HTH: HB1, ASXL, restriction endonuclease HTH domain; InterPro: IPR007759 DNA-directed RNA polymerases 2 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query322
1d5v_A94 Solution Structure Of The Forkhead Domain Of The Ad 3e-48
1vtn_C102 Co-Crystal Structure Of The Hnf-3FORK HEAD DNA-Reco 4e-37
2hdc_A97 Structure Of Transcription Factor GenesisDNA COMPLE 5e-37
2hfh_A109 The Nmr Structures Of A Winged Helix Protein: Genes 4e-34
2c6y_A111 Crystal Structure Of Interleukin Enhancer-Binding F 1e-28
1jxs_A98 Solution Structure Of The Dna-Binding Domain Of Int 3e-27
2a3s_A101 Solution Structure And Dynamics Of Dna-Binding Doma 3e-26
1kq8_A100 Solution Structure Of Winged Helix Protein Hfh-1 Le 2e-25
3g73_A142 Structure Of The Foxm1 Dna Binding Length = 142 1e-15
2a07_F93 Crystal Structure Of Foxp2 Bound Specifically To Dn 1e-15
2kiu_A87 Solution Structure And Backbone Dynamics Of The Dna 1e-14
3qrf_F82 Structure Of A Domain-Swapped Foxp3 Dimer Length = 1e-14
1e17_A150 Solution Structure Of The Dna Binding Domain Of The 2e-14
3l2c_A110 Crystal Structure Of The Dna Binding Domain Of Foxo 3e-14
2k86_A103 Solution Structure Of Foxo3a Forkhead Domain Length 2e-13
2uzk_A97 Crystal Structure Of The Human Foxo3a-Dbd Bound To 2e-13
3co7_C117 Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna Le 5e-13
3co6_C100 Crystal Structure Of Foxo1 Dbd Bound To Dbe1 Dna Le 5e-13
>pdb|1D5V|A Chain A, Solution Structure Of The Forkhead Domain Of The Adipocyte- Transcription Factor Freac-11 (S12) Length = 94 Back     alignment and structure 
Iteration: 1

 Score =  188 bits (478), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 83/93 (89%), Positives = 91/93 (97%)
Query: 61  MVKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNEC 120
           +VKPPYSYIALI MAIQNAP+K+ TLNGIYQFIM+RFP+YRENKQGWQNSIRHNLSLNEC
Sbjct: 2   LVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNEC 61
Query: 121 FVKIPRDDKKPGKGSYWTLDPDSYNMFDNGSYL 153
           FVK+PRDDKKPGKGSYWTLDPDSYNMF+NGS+L
Sbjct: 62  FVKVPRDDKKPGKGSYWTLDPDSYNMFENGSFL 94
>pdb|1VTN|C Chain C, Co-Crystal Structure Of The Hnf-3FORK HEAD DNA-Recognition Motif Resembles Histone H5 Length = 102 Back     alignment and structure
>pdb|2HDC|A Chain A, Structure Of Transcription Factor GenesisDNA COMPLEX Length = 97 Back     alignment and structure
>pdb|2HFH|A Chain A, The Nmr Structures Of A Winged Helix Protein: Genesis, 20 Structures Length = 109 Back     alignment and structure
>pdb|2C6Y|A Chain A, Crystal Structure Of Interleukin Enhancer-Binding Factor 1 Bound To Dna Length = 111 Back     alignment and structure
>pdb|1JXS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Interleukin Enhancer Binding Factor Length = 98 Back     alignment and structure
>pdb|2A3S|A Chain A, Solution Structure And Dynamics Of Dna-Binding Domain Of Myocyte Nuclear Factor Length = 101 Back     alignment and structure
>pdb|1KQ8|A Chain A, Solution Structure Of Winged Helix Protein Hfh-1 Length = 100 Back     alignment and structure
>pdb|3G73|A Chain A, Structure Of The Foxm1 Dna Binding Length = 142 Back     alignment and structure
>pdb|2A07|F Chain F, Crystal Structure Of Foxp2 Bound Specifically To Dna. Length = 93 Back     alignment and structure
>pdb|2KIU|A Chain A, Solution Structure And Backbone Dynamics Of The Dna-Binding Domain Of Foxp1: Insight Into Its Domain Swapping Length = 87 Back     alignment and structure
>pdb|3QRF|F Chain F, Structure Of A Domain-Swapped Foxp3 Dimer Length = 82 Back     alignment and structure
>pdb|3L2C|A Chain A, Crystal Structure Of The Dna Binding Domain Of Foxo4 Bound To Dna Length = 110 Back     alignment and structure
>pdb|2K86|A Chain A, Solution Structure Of Foxo3a Forkhead Domain Length = 103 Back     alignment and structure
>pdb|2UZK|A Chain A, Crystal Structure Of The Human Foxo3a-Dbd Bound To Dna Length = 97 Back     alignment and structure
>pdb|3CO7|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna Length = 117 Back     alignment and structure
>pdb|3CO6|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe1 Dna Length = 100 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query322
1vtn_C102 HNF-3/FORK head DNA-recognition motif; protein-DNA 3e-72
2hfh_A109 Genesis, HFH-2; HNF-3 homologues, winged helix pro 5e-72
2c6y_A111 Forkhead box protein K2; transcription regulation, 9e-72
2hdc_A97 Protein (transcription factor); structure, dyanami 2e-71
1kq8_A100 HFH-1, hepatocyte nuclear factor 3 forkhead homolo 1e-67
3g73_A142 Forkhead box protein M1; DNA-binding domain, forkh 6e-58
2a07_F93 Forkhead box protein P2; double-helix, swapping, h 3e-56
1e17_A150 AFX; DNA binding domain, winged helix; NMR {Homo s 1e-52
3coa_C117 Forkhead box protein O1; winged helix, forkhead do 2e-51
3l2c_A110 Forkhead box protein O4; winged helix, transcripti 2e-50
3bpy_A85 FORK head domain, forkhead transcription factor FO 8e-50
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A Length = 102 Back     alignment and structure
 Score =  217 bits (555), Expect = 3e-72
 Identities = 69/99 (69%), Positives = 80/99 (80%)

Query: 63  KPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECFV 122
           KPPYSYI+LI MAIQ AP K  TL+ IYQ+IM+ FPYYREN+Q WQNSIRH+LS N+CFV
Sbjct: 3   KPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFV 62

Query: 123 KIPRDDKKPGKGSYWTLDPDSYNMFDNGSYLRRRRRFKK 161
           K+ R   KPGKGSYW L P S NMF+NG YLRR++RFK 
Sbjct: 63  KVARSPDKPGKGSYWALHPSSGNMFENGCYLRRQKRFKL 101
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14 Length = 109 Back     alignment and structure
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A Length = 111 Back     alignment and structure
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14 Length = 97 Back     alignment and structure
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14 Length = 100 Back     alignment and structure
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens} Length = 142 Back     alignment and structure
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F Length = 93 Back     alignment and structure
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A Length = 117 Back     alignment and structure
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} PDB: 3co6_C* Length = 110 Back     alignment and structure
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens} SCOP: a.4.5.14 Length = 85 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query322
1vtn_C102 HNF-3/FORK head DNA-recognition motif; protein-DNA 100.0
2hdc_A97 Protein (transcription factor); structure, dyanami 100.0
1kq8_A100 HFH-1, hepatocyte nuclear factor 3 forkhead homolo 100.0
2hfh_A109 Genesis, HFH-2; HNF-3 homologues, winged helix pro 100.0
2c6y_A111 Forkhead box protein K2; transcription regulation, 100.0
3l2c_A110 Forkhead box protein O4; winged helix, transcripti 100.0
3coa_C117 Forkhead box protein O1; winged helix, forkhead do 100.0
3bpy_A85 FORK head domain, forkhead transcription factor FO 100.0
2a07_F93 Forkhead box protein P2; double-helix, swapping, h 100.0
1e17_A150 AFX; DNA binding domain, winged helix; NMR {Homo s 100.0
3g73_A142 Forkhead box protein M1; DNA-binding domain, forkh 100.0
1uhm_A78 Histone H1, histone HHO1P; winged helix-turn-helix 84.93
1uss_A88 Histone H1; DNA binding protein, linker histone, D 84.65
1hst_A90 Histone H5; chromosomal protein; 2.60A {Gallus gal 82.28
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A Back     alignment and structure
Probab=100.00  E-value=9.5e-45  Score=297.35  Aligned_cols=100  Identities=69%  Similarity=1.229  Sum_probs=97.4

Q ss_pred             CCCCChHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCccccCCCCccccccccccccccccccccCCCCCCCceeeEeCC
Q psy13625         62 VKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECFVKIPRDDKKPGKGSYWTLDP  141 (322)
Q Consensus        62 ~KPPySYa~LIa~AI~sSp~krLTL~EIYewI~~~fPYYr~~~~GWKNSIRHNLSLnkcFvKVpR~~~~pGKGs~WtldP  141 (322)
                      +||||||++||+|||+++|+++|||+|||+||+++||||+.+..|||||||||||||+||+||+|..+++|||+||+|+|
T Consensus         2 ~KPp~SY~~LI~~AI~~sp~~~LtL~eIY~~I~~~fpyyr~~~~gWqNSIRHNLSln~~F~kv~r~~~~~GKG~~W~l~p   81 (102)
T 1vtn_C            2 AKPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSYWALHP   81 (102)
T ss_dssp             CCCSSCHHHHHHHHHHTSTTSCBCHHHHHHHHHHHCGGGGSCHHHHHHHHHHHHHHCTTEEEECCCSCSSCSSCEEEECG
T ss_pred             cCcCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHcCCccccCCCchhhhhhhhhhhccceEecCCCCCCCCCcceEEECc
Confidence            69999999999999999999999999999999999999999999999999999999999999999988999999999999


Q ss_pred             CccccccCCchhhhhhccch
Q psy13625        142 DSYNMFDNGSYLRRRRRFKK  161 (322)
Q Consensus       142 e~~~~f~~g~~~RrRkr~k~  161 (322)
                      ++.++|++|.++|||+|+++
T Consensus        82 ~~~~~f~~g~~~rr~~~~~~  101 (102)
T 1vtn_C           82 SSGNMFENGCYLRRQKRFKL  101 (102)
T ss_dssp             GGCSTTCSSCSSSCSSCCCC
T ss_pred             CHHHHhhcCCeecccccccc
Confidence            99999999999999998864
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14 Back     alignment and structure
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14 Back     alignment and structure
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14 Back     alignment and structure
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A Back     alignment and structure
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C* Back     alignment and structure
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A Back     alignment and structure
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens} Back     alignment and structure
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F Back     alignment and structure
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens} Back     alignment and structure
>1uhm_A Histone H1, histone HHO1P; winged helix-turn-helix, linker histone, riken structural genomics/proteomics initiative, RSGI; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13 Back     alignment and structure
>1uss_A Histone H1; DNA binding protein, linker histone, DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13 PDB: 1yqa_A Back     alignment and structure
>1hst_A Histone H5; chromosomal protein; 2.60A {Gallus gallus} SCOP: a.4.5.13 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 322
d1d5va_94 a.4.5.14 (A:) Adipocyte-transcription factor FREAC 1e-50
d2hdca_97 a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [Ta 2e-49
d2c6ya198 a.4.5.14 (A:1-98) Interleukin enhancer binding fac 8e-49
d2a07f182 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP 4e-38
d1kq8a_75 a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Ra 1e-35
d3bpya185 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapie 3e-35
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]} Length = 94 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: Adipocyte-transcription factor FREAC-11 (s12, fkh-14)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  161 bits (408), Expect = 1e-50
 Identities = 83/93 (89%), Positives = 91/93 (97%)

Query: 61  MVKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNEC 120
           +VKPPYSYIALI MAIQNAP+K+ TLNGIYQFIM+RFP+YRENKQGWQNSIRHNLSLNEC
Sbjct: 2   LVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNEC 61

Query: 121 FVKIPRDDKKPGKGSYWTLDPDSYNMFDNGSYL 153
           FVK+PRDDKKPGKGSYWTLDPDSYNMF+NGS+L
Sbjct: 62  FVKVPRDDKKPGKGSYWTLDPDSYNMFENGSFL 94
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97 Back     information, alignment and structure
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor {Human (Homo sapiens) [TaxId: 9606]} Length = 98 Back     information, alignment and structure
>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 82 Back     information, alignment and structure
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 75 Back     information, alignment and structure
>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]} Length = 85 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query322
d2hdca_97 Genesis {Rat (Rattus norvegicus) [TaxId: 10116]} 100.0
d1d5va_94 Adipocyte-transcription factor FREAC-11 (s12, fkh- 100.0
d2c6ya198 Interleukin enhancer binding factor {Human (Homo s 100.0
d1kq8a_75 HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norv 100.0
d2a07f182 Forkhead box protein P2, FOXP2 {Human (Homo sapien 100.0
d3bpya185 Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1hsta_74 Histone H5, globular domain {Chicken (Gallus gallu 92.13
d1usta_92 Histone H1 homologue Hho1p {Baker's yeast (Sacchar 91.66
d1ussa_88 Histone H1 homologue Hho1p {Baker's yeast (Sacchar 91.18
d1ghca_75 Histone H1, globular domain {Chicken (Gallus gallu 81.56
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: Genesis
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.5e-42  Score=278.72  Aligned_cols=97  Identities=72%  Similarity=1.296  Sum_probs=93.7

Q ss_pred             CCCCChHHHHHHHHHhcCCCCcccHHHHHHHHHhhCCccccCCCCccccccccccccccccccccCCCCCCCceeeEeCC
Q psy13625         62 VKPPYSYIALIAMAIQNAPDKRCTLNGIYQFIMERFPYYRENKQGWQNSIRHNLSLNECFVKIPRDDKKPGKGSYWTLDP  141 (322)
Q Consensus        62 ~KPPySYa~LIa~AI~sSp~krLTL~EIYewI~~~fPYYr~~~~GWKNSIRHNLSLnkcFvKVpR~~~~pGKGs~WtldP  141 (322)
                      +||||||++||++||+++|+++|||+|||+||+++||||+.+.+|||||||||||+|+||+||++..+.+|||+||+|+|
T Consensus         1 vKPp~sY~~LI~~Ai~~sp~~~ltL~eIY~~i~~~fpyfr~~~~gWkNSIRHnLSln~~F~kv~~~~~~~gKg~~W~l~p   80 (97)
T d2hdca_           1 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP   80 (97)
T ss_dssp             CCCCCCHHHHHHHHHHTCTTTCBCHHHHHHHHHHHCHHHHHHCSSHHHHHHHHHHHHHCCEEECSCTTCSSSCCEEECCT
T ss_pred             CCCCCcHHHHHHHHHHhCCCcCccHHHHHHHHHHhCccccCCCCCchhhhhhhcchhhhhcccCCCCCCCCCCcEEEECc
Confidence            59999999999999999999999999999999999999999999999999999999999999999988899999999999


Q ss_pred             CccccccCCchhhhhhc
Q psy13625        142 DSYNMFDNGSYLRRRRR  158 (322)
Q Consensus       142 e~~~~f~~g~~~RrRkr  158 (322)
                      ++.+.|++|.++|||+|
T Consensus        81 ~~~~~~~~~~~~rrrkr   97 (97)
T d2hdca_          81 QSEDMFDNGSFLRRRKR   97 (97)
T ss_dssp             THHHHHHHSCCCSSSCC
T ss_pred             cHHHHhhcCCccccCCC
Confidence            99999999999888765
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hsta_ a.4.5.13 (A:) Histone H5, globular domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1usta_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ussa_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ghca_ a.4.5.13 (A:) Histone H1, globular domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure