Psyllid ID: psy13635
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 357 | 2.2.26 [Sep-21-2011] | |||||||
| O75581 | 1613 | Low-density lipoprotein r | yes | N/A | 0.582 | 0.128 | 0.539 | 5e-65 | |
| O88572 | 1613 | Low-density lipoprotein r | yes | N/A | 0.582 | 0.128 | 0.535 | 2e-64 | |
| O75197 | 1615 | Low-density lipoprotein r | no | N/A | 0.582 | 0.128 | 0.535 | 2e-62 | |
| Q91VN0 | 1614 | Low-density lipoprotein r | no | N/A | 0.582 | 0.128 | 0.526 | 1e-61 | |
| Q07954 | 4544 | Prolow-density lipoprotei | no | N/A | 0.621 | 0.048 | 0.385 | 1e-49 | |
| Q91ZX7 | 4545 | Prolow-density lipoprotei | no | N/A | 0.621 | 0.048 | 0.381 | 5e-49 | |
| A4QPB2 | 252 | Low-density lipoprotein r | no | N/A | 0.554 | 0.785 | 0.458 | 1e-46 | |
| P98157 | 4543 | Low-density lipoprotein r | no | N/A | 0.621 | 0.048 | 0.377 | 5e-46 | |
| Q8VI56 | 1905 | Low-density lipoprotein r | no | N/A | 0.579 | 0.108 | 0.436 | 5e-46 | |
| Q9QYP1 | 1905 | Low-density lipoprotein r | no | N/A | 0.579 | 0.108 | 0.436 | 6e-46 |
| >sp|O75581|LRP6_HUMAN Low-density lipoprotein receptor-related protein 6 OS=Homo sapiens GN=LRP6 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 248 bits (633), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 123/228 (53%), Positives = 160/228 (70%), Gaps = 20/228 (8%)
Query: 121 GLAIDW--LTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHP 178
+AID+ + +YWTD E + S +DG + + T ++ HP
Sbjct: 362 AIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVV----------------TAQIAHP 405
Query: 179 DGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDW 238
DG+AVDWVARNLYWTDTGTDRIEV RL GT RK+L++ DL EPRAI L P GY++W+DW
Sbjct: 406 DGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDW 465
Query: 239 NEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNR 298
E PKIER+ L+G +RV+LV LGWPNG+ LD D K+YW DAKTDKIE+++ DG R
Sbjct: 466 GEI-PKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGR 524
Query: 299 RELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVIIER 346
R L+ + +PH+FG +LLGDYVYWTDWQRRSI+RV+K + +REVII++
Sbjct: 525 RVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSA-EREVIIDQ 571
|
Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Cell-surface coreceptor of Wnt/beta-catenin signaling, which plays a pivotal role in bone formation. The Wnt-induced Fzd/LRP6 coreceptor complex recruits DVL1 polymers to the plasma membrane which, in turn, recruits the AXIN1/GSK3B-complex to the cell surface promoting the formation of signalsomes and inhibiting AXIN1/GSK3-mediated phosphorylation and destruction of beta-catenin. Required for posterior patterning of the epiblast during gastrulation. Homo sapiens (taxid: 9606) |
| >sp|O88572|LRP6_MOUSE Low-density lipoprotein receptor-related protein 6 OS=Mus musculus GN=Lrp6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 246 bits (628), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 122/228 (53%), Positives = 159/228 (69%), Gaps = 20/228 (8%)
Query: 121 GLAIDW--LTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHP 178
+AID+ + +YWTD E + S +DG + + T ++ HP
Sbjct: 362 AIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVV----------------TAQIAHP 405
Query: 179 DGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDW 238
DG+AVDWVARNLYWTDTGTDRIEV RL GT RK+L++ DL EPRAI L P GY++W+DW
Sbjct: 406 DGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDW 465
Query: 239 NEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNR 298
E PKIER+ L+G +RV+LV LGWPNG+ LD D +YW DAKTDKIE+++ DG R
Sbjct: 466 GEI-PKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGTIYWGDAKTDKIEVMNTDGTGR 524
Query: 299 RELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVIIER 346
R L+ + +PH+FG +LLGDYVYWTDWQRRSI+RV+K + +REVII++
Sbjct: 525 RVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSA-EREVIIDQ 571
|
Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Cell-surface coreceptor of Wnt/beta-catenin signaling, which plays a pivotal role in bone formation. The Wnt-induced Fzd/LRP6 coreceptor complex recruits DVL1 polymers to the plasma membrane which, in turn, recruits the AXIN1/GSK3B-complex to the cell surface promoting the formation of signalsomes and inhibiting AXIN1/GSK3-mediated phosphorylation and destruction of beta-catenin. Required for posterior patterning of the epiblast during gastrulation. Mus musculus (taxid: 10090) |
| >sp|O75197|LRP5_HUMAN Low-density lipoprotein receptor-related protein 5 OS=Homo sapiens GN=LRP5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 239 bits (611), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 122/228 (53%), Positives = 155/228 (67%), Gaps = 20/228 (8%)
Query: 121 GLAIDW--LTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHP 178
+AID+ L +YWTD E + + LDG + L E+ P
Sbjct: 375 AIAIDYDPLEGYVYWTDDEVRAIRRAYLDGSGAQTLV----------------NTEINDP 418
Query: 179 DGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDW 238
DG+AVDWVARNLYWTDTGTDRIEV RL GT RK+LV+ DL EPRAI L P G ++W+DW
Sbjct: 419 DGIAVDWVARNLYWTDTGTDRIEVTRLNGTSRKILVSEDLDEPRAIALHPVMGLMYWTDW 478
Query: 239 NEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNR 298
E PKIE + L+G ER +LV LGWPNG+ LD+ KLYW DAKTDKIE+I+ DG R
Sbjct: 479 GEN-PKIECANLDGQERRVLVNASLGWPNGLALDLQEGKLYWGDAKTDKIEVINVDGTKR 537
Query: 299 RELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVIIER 346
R L+ + LPH+FG +LLGD++YWTDWQRRSI+RV+K+ + R+VII++
Sbjct: 538 RTLLEDKLPHIFGFTLLGDFIYWTDWQRRSIERVHKVKAS-RDVIIDQ 584
|
Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Cell-surface coreceptor of Wnt/beta-catenin signaling, which plays a pivotal role in bone formation. The Wnt-induced Fzd/LRP6 coreceptor complex recruits DVL1 polymers to the plasma membrane which, in turn, recruits the AXIN1/GSK3B-complex to the cell surface promoting the formation of signalsomes and inhibiting AXIN1/GSK3-mediated phosphorylation and destruction of beta-catenin. Appears be required for postnatal control of vascular regression in the eye. Required for posterior patterning of the epiblast during gastrulation. Homo sapiens (taxid: 9606) |
| >sp|Q91VN0|LRP5_MOUSE Low-density lipoprotein receptor-related protein 5 OS=Mus musculus GN=Lrp5 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 236 bits (603), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 120/228 (52%), Positives = 155/228 (67%), Gaps = 20/228 (8%)
Query: 121 GLAIDW--LTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHP 178
+AID+ L +YWTD E + + LDG + L E+ P
Sbjct: 374 AIAIDYDPLEGYVYWTDDEVRAIRRAYLDGSGAQTLV----------------NTEINDP 417
Query: 179 DGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDW 238
DG+AVDWVARNLYWTDTGTDRIEV RL GT RK+LV+ DL EPRAI L P G ++W+DW
Sbjct: 418 DGIAVDWVARNLYWTDTGTDRIEVTRLNGTSRKILVSEDLDEPRAIVLHPVMGLMYWTDW 477
Query: 239 NEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNR 298
E PKIE + L+G +R +LV LGWPNG+ LD+ KLYW DAKTDKIE+I+ DG R
Sbjct: 478 GEN-PKIECANLDGRDRHVLVNTSLGWPNGLALDLQEGKLYWGDAKTDKIEVINIDGTKR 536
Query: 299 RELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVIIER 346
+ L+ + LPH+FG +LLGD++YWTDWQRRSI+RV+K+ + R+VII++
Sbjct: 537 KTLLEDKLPHIFGFTLLGDFIYWTDWQRRSIERVHKVKAS-RDVIIDQ 583
|
Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Cell-surface coreceptor of Wnt/beta-catenin signaling, which plays a pivotal role in bone formation. The Wnt-induced Fzd/LRP6 coreceptor complex recruits DVL1 polymers to the plasma membrane which, in turn, recruits the AXIN1/GSK3B-complex to the cell surface promoting the formation of signalsomes and inhibiting AXIN1/GSK3-mediated phosphorylation and destruction of beta-catenin (By similarity). Appears be required for postnatal control of vascular regression in the eye. Required for posterior patterning of the epiblast during gastrulation. Mus musculus (taxid: 10090) |
| >sp|Q07954|LRP1_HUMAN Prolow-density lipoprotein receptor-related protein 1 OS=Homo sapiens GN=LRP1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 197 bits (501), Expect = 1e-49, Method: Composition-based stats.
Identities = 93/241 (38%), Positives = 145/241 (60%), Gaps = 19/241 (7%)
Query: 106 GSKHNVITNGLITPDGLAIDWLTEKLYWTDSET--NKLEVSSLDGKKRKVLYWEDIDQPR 163
GS + ++ GL L D+ + +YWTD T + + L+G +VL+
Sbjct: 3046 GSNYTLLKQGLNNAVALDFDYREQMIYWTDVTTQGSMIRRMHLNGSNVQVLH-------- 3097
Query: 164 AIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRA 223
+ +PDG+AVDWV NLYW D G D IEV +L G +R VLV++ L EPRA
Sbjct: 3098 --------RTGLSNPDGLAVDWVGGNLYWCDKGRDTIEVSKLNGAYRTVLVSSGLREPRA 3149
Query: 224 ITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDA 283
+ + +GYL+W+DW + I R ++G R ++V ++ WPNG+TLD E++YW DA
Sbjct: 3150 LVVDVQNGYLYWTDWGD-HSLIGRIGMDGSSRSVIVDTKITWPNGLTLDYVTERIYWADA 3208
Query: 284 KTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVI 343
+ D IE DG+NR ++++++PH+F ++L DYVYWTDW+ +SI+R +K TG ++ ++
Sbjct: 3209 REDYIEFASLDGSNRHVVLSQDIPHIFALTLFEDYVYWTDWETKSINRAHKTTGTNKTLL 3268
Query: 344 I 344
I
Sbjct: 3269 I 3269
|
Functions as a receptor for Pseudomonas aeruginosa exotoxin A. Homo sapiens (taxid: 9606) |
| >sp|Q91ZX7|LRP1_MOUSE Prolow-density lipoprotein receptor-related protein 1 OS=Mus musculus GN=Lrp1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 195 bits (495), Expect = 5e-49, Method: Composition-based stats.
Identities = 92/241 (38%), Positives = 145/241 (60%), Gaps = 19/241 (7%)
Query: 106 GSKHNVITNGLITPDGLAIDWLTEKLYWTDSET--NKLEVSSLDGKKRKVLYWEDIDQPR 163
GS + ++ GL L D+ + +YWTD T + + L+G +VL+
Sbjct: 3047 GSNYTLLKQGLNNAVALDFDYREQMIYWTDVTTQGSMIRRMHLNGSNVQVLH-------- 3098
Query: 164 AIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRA 223
+ +PDG+AVDWV NLYW D G D IEV +L G +R VLV++ L EPRA
Sbjct: 3099 --------RTGLSNPDGLAVDWVGGNLYWCDKGRDTIEVSKLNGAYRTVLVSSGLREPRA 3150
Query: 224 ITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDA 283
+ + +GYL+W+DW + I R ++G R ++V ++ WPNG+T+D E++YW DA
Sbjct: 3151 LVVDVQNGYLYWTDWGD-HSLIGRIGMDGSGRSIIVDTKITWPNGLTVDYVTERIYWADA 3209
Query: 284 KTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVI 343
+ D IE DG+NR ++++++PH+F ++L DYVYWTDW+ +SI+R +K TG ++ ++
Sbjct: 3210 REDYIEFASLDGSNRHVVLSQDIPHIFALTLFEDYVYWTDWETKSINRAHKTTGANKTLL 3269
Query: 344 I 344
I
Sbjct: 3270 I 3270
|
Functions as a receptor for Vibrio cholerae cholix toxin and for Pseudomonas aeruginosa exotoxin A. Mus musculus (taxid: 10090) |
| >sp|A4QPB2|LRP5L_HUMAN Low-density lipoprotein receptor-related protein 5-like protein OS=Homo sapiens GN=LRP5L PE=2 SV=2 | Back alignment and function description |
|---|
Score = 187 bits (475), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/216 (45%), Positives = 132/216 (61%), Gaps = 18/216 (8%)
Query: 131 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNL 190
+YWTD E + + LDG + L ++ PD +AV+WVAR+L
Sbjct: 5 VYWTDDEVWAIRRAYLDGSGAQTLI----------------NTKINDPDDIAVNWVARSL 48
Query: 191 YWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLL 250
YWT TGT+ IEV L T K+LV+ D+ EPRAI L P G +W DW E P+I+R+ L
Sbjct: 49 YWTHTGTEHIEVTCLNSTSHKILVSEDMDEPRAIALHPEMGLTYWIDWGEN-PEIKRANL 107
Query: 251 NGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVF 310
+ E +LV LGWPNG+ LD+ KLYW DAKTDKIE I D R+ L+ + LPH+F
Sbjct: 108 DRQELRVLVNASLGWPNGLALDLQEGKLYWGDAKTDKIEAISVDETKRQTLLKDKLPHIF 167
Query: 311 GISLLGDYVYWTDWQRRSIDRVNKITGNDREVIIER 346
+LLGD++YWT WQ SI RV+K+ N R+VII++
Sbjct: 168 RFTLLGDFIYWTAWQHHSIKRVHKVKAN-RDVIIDQ 202
|
Homo sapiens (taxid: 9606) |
| >sp|P98157|LRP1_CHICK Low-density lipoprotein receptor-related protein 1 OS=Gallus gallus GN=LRP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 185 bits (469), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 91/241 (37%), Positives = 144/241 (59%), Gaps = 19/241 (7%)
Query: 106 GSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSL--DGKKRKVLYWEDIDQPR 163
GS + ++ GL L D+ + +YWTD T + + +G +VL+
Sbjct: 3043 GSNYTLLKQGLNNAVALDFDYREQMIYWTDVTTQGSMIRRMHINGSNVQVLH-------- 3094
Query: 164 AIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRA 223
+ +PDG+AVDWV NLYW D G D IEV +L G +R VLVN+ L EPRA
Sbjct: 3095 --------RTGLSNPDGLAVDWVGGNLYWCDKGRDTIEVSKLNGAYRTVLVNSGLREPRA 3146
Query: 224 ITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDA 283
+ + +GYL+W+DW + I + ++G R ++V ++ WPNG+TLD N ++YW DA
Sbjct: 3147 LVVDVQNGYLYWTDWGDHS-LIGKIGMDGTNRSVIVDTKITWPNGLTLDYINSRIYWADA 3205
Query: 284 KTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVI 343
+ D IE DG+NR ++++++PH+F ++L DY+YWTDW+ +SI+R +K TG ++ ++
Sbjct: 3206 REDYIEFASLDGSNRHTVLSQDIPHIFALTLFEDYIYWTDWETKSINRAHKTTGANKTLL 3265
Query: 344 I 344
I
Sbjct: 3266 I 3266
|
Endocytic receptor involved in endocytosis and in phagocytosis of apoptotic cells. Involved in cellular lipid homeostasis. Involved in the plasma clearance of chylomicron remnants and activated LRPAP1 (alpha 2-macroglobulin), as well as the local metabolism of complexes between plasminogen activators and their endogenous inhibitors. Gallus gallus (taxid: 9031) |
| >sp|Q8VI56|LRP4_MOUSE Low-density lipoprotein receptor-related protein 4 OS=Mus musculus GN=Lrp4 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 185 bits (469), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 99/227 (43%), Positives = 147/227 (64%), Gaps = 20/227 (8%)
Query: 121 GLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDG 180
+ +D L K+YW+DS +++ +SLDG + EDI T ++ DG
Sbjct: 1085 AIGVDPLEGKVYWSDSTLHRISRASLDGSQH-----EDI-----------ITTGLQTTDG 1128
Query: 181 VAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNE 240
+AVD + R +YWTDTGT+RIEV L+G+ RKVLV +L PRAI L G+++W+DW E
Sbjct: 1129 LAVDAIGRKVYWTDTGTNRIEVGNLDGSMRKVLVWQNLDSPRAIVLYHEMGFMYWTDWGE 1188
Query: 241 KRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRE 300
K+ERS ++G +R +L+ + LGWPNG+T+D + +L W DA T++IE+ D +G NR
Sbjct: 1189 N-AKLERSGMDGSDRTVLINNNLGWPNGLTVDKTSSQLLWADAHTERIEVADLNGANRHT 1247
Query: 301 LINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVIIERS 347
L++ + H +G++LL Y+YWTDWQ RSI R +K TG++ VI+ RS
Sbjct: 1248 LVSP-VQHPYGLTLLDSYIYWTDWQTRSIHRADKSTGSN--VILVRS 1291
|
Mediates SOST-dependent inhibition of bone formation. Functions as a specific facilitator of SOST-mediated inhibition of Wnt signaling. Plays a key role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Directly binds AGRIN and recruits it to the MUSK signaling complex. Mediates the AGRIN-induced phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Alternatively, may be involved in the negative regulation of the canonical Wnt signaling pathway, being able to antagonize the LRP6-mediated activation of this pathway. More generally, has been proposed to function as a cell surface endocytic receptor binding and internalizing extracellular ligands for degradation by lysosomes. Mus musculus (taxid: 10090) |
| >sp|Q9QYP1|LRP4_RAT Low-density lipoprotein receptor-related protein 4 OS=Rattus norvegicus GN=Lrp4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 185 bits (469), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 99/227 (43%), Positives = 147/227 (64%), Gaps = 20/227 (8%)
Query: 121 GLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDG 180
+ +D L K+YW+DS +++ +SLDG + EDI T ++ DG
Sbjct: 1085 AIGVDPLEGKVYWSDSTLHRISRASLDGSQH-----EDI-----------ITTGLQTTDG 1128
Query: 181 VAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNE 240
+AVD + R +YWTDTGT+RIEV L+G+ RKVLV +L PRAI L G+++W+DW E
Sbjct: 1129 LAVDAIGRKVYWTDTGTNRIEVGNLDGSMRKVLVWQNLDSPRAIVLYHEMGFMYWTDWGE 1188
Query: 241 KRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRE 300
K+ERS ++G +R +L+ + LGWPNG+T+D + +L W DA T++IE+ D +G NR
Sbjct: 1189 N-AKLERSGMDGSDRTVLINNNLGWPNGLTVDKTSSQLLWADAHTERIEVADLNGANRHT 1247
Query: 301 LINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVIIERS 347
L++ + H +G++LL Y+YWTDWQ RSI R +K TG++ VI+ RS
Sbjct: 1248 LVSP-VQHPYGLTLLDSYIYWTDWQTRSIHRADKSTGSN--VILVRS 1291
|
Mediates SOST-dependent inhibition of bone formation (By similarity). Functions as a specific facilitator of SOST-mediated inhibition of Wnt signaling (By similarity). Plays a key role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Directly binds AGRIN and recruits it to the MUSK signaling complex. Mediates the AGRIN-induced phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Alternatively, may be involved in the negative regulation of the canonical Wnt signaling pathway, being able to antagonize the LRP6-mediated activation of this pathway. More generally, has been proposed to function as a cell surface endocytic receptor binding and internalizing extracellular ligands for degradation by lysosomes. Rattus norvegicus (taxid: 10116) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 357 | ||||||
| 380023251 | 1606 | PREDICTED: LOW QUALITY PROTEIN: low-dens | 0.588 | 0.130 | 0.592 | 5e-74 | |
| 328790587 | 1596 | PREDICTED: low-density lipoprotein recep | 0.588 | 0.131 | 0.592 | 6e-74 | |
| 340727334 | 1606 | PREDICTED: low-density lipoprotein recep | 0.588 | 0.130 | 0.592 | 2e-73 | |
| 350422992 | 1606 | PREDICTED: low-density lipoprotein recep | 0.588 | 0.130 | 0.592 | 2e-73 | |
| 332017479 | 1615 | Low-density lipoprotein receptor-related | 0.588 | 0.130 | 0.570 | 1e-72 | |
| 383857988 | 1606 | PREDICTED: low-density lipoprotein recep | 0.588 | 0.130 | 0.578 | 2e-72 | |
| 307186181 | 1662 | Low-density lipoprotein receptor-related | 0.588 | 0.126 | 0.583 | 1e-71 | |
| 307212491 | 1680 | Low-density lipoprotein receptor-related | 0.588 | 0.125 | 0.578 | 3e-71 | |
| 387176490 | 261 | arrow, partial [Apis mellifera] gi|38717 | 0.554 | 0.758 | 0.602 | 1e-70 | |
| 387176528 | 261 | arrow, partial [Apis mellifera] | 0.554 | 0.758 | 0.598 | 5e-70 |
| >gi|380023251|ref|XP_003695438.1| PREDICTED: LOW QUALITY PROTEIN: low-density lipoprotein receptor-related protein 6-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 284 bits (726), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 135/228 (59%), Positives = 173/228 (75%), Gaps = 18/228 (7%)
Query: 121 GLAIDW--LTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHP 178
+AID+ + E LYWTD E + +SLDG ++ + T EV++P
Sbjct: 369 AIAIDFDPVQEMLYWTDEEARAIRRASLDGSNQE----------------NIITTEVKNP 412
Query: 179 DGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDW 238
DG+AVDW+ARNLYWTDTGTDRIEV RL GT RKVL+N DL+EPRAI L+P G++FW+DW
Sbjct: 413 DGIAVDWLARNLYWTDTGTDRIEVARLNGTSRKVLINEDLIEPRAIALAPELGWMFWTDW 472
Query: 239 NEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNR 298
NEKRPKIERS L+G ER+LL+ + WPNGI LD+ K+YWCDAKTDKIE+ + DG NR
Sbjct: 473 NEKRPKIERSNLDGTERILLINKDIVWPNGIALDLARWKIYWCDAKTDKIEVCNMDGTNR 532
Query: 299 RELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVIIER 346
RE+I +NLPH+FG+SLLGDY+YWTDWQRRS+DR +K+TG +REVI+++
Sbjct: 533 REVITDNLPHLFGLSLLGDYLYWTDWQRRSVDRAHKLTGGEREVIVDQ 580
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328790587|ref|XP_623419.2| PREDICTED: low-density lipoprotein receptor-related protein 6-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 135/228 (59%), Positives = 173/228 (75%), Gaps = 18/228 (7%)
Query: 121 GLAIDW--LTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHP 178
+AID+ + E LYWTD E + +SLDG ++ + T EV++P
Sbjct: 369 AIAIDFDPVQEMLYWTDEEARAIRRASLDGSNQE----------------NIITTEVKNP 412
Query: 179 DGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDW 238
DG+AVDW+ARNLYWTDTGTDRIEV RL GT RKVL+N DL+EPRAI L+P G++FW+DW
Sbjct: 413 DGIAVDWLARNLYWTDTGTDRIEVARLNGTSRKVLINEDLIEPRAIALAPELGWMFWTDW 472
Query: 239 NEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNR 298
NEKRPKIERS L+G ER+LL+ + WPNGI LD+ K+YWCDAKTDKIE+ + DG NR
Sbjct: 473 NEKRPKIERSNLDGTERILLINKDIVWPNGIALDLARWKIYWCDAKTDKIEVCNMDGTNR 532
Query: 299 RELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVIIER 346
RE+I +NLPH+FG+SLLGDY+YWTDWQRRS+DR +K+TG +REVI+++
Sbjct: 533 REVITDNLPHLFGLSLLGDYLYWTDWQRRSVDRAHKLTGGEREVIVDQ 580
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340727334|ref|XP_003402001.1| PREDICTED: low-density lipoprotein receptor-related protein 6-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/228 (59%), Positives = 172/228 (75%), Gaps = 18/228 (7%)
Query: 121 GLAIDW--LTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHP 178
+AID+ + E LYWTD E + +SLDG ++ + EVE+P
Sbjct: 369 AIAIDFDPVQEMLYWTDEEARAIRRASLDGSNQE----------------NIIITEVENP 412
Query: 179 DGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDW 238
DG+AVDW+ARNLYWTDTGTDRIEV RL GT RKVL+N DL+EPRAI L+P G++FW+DW
Sbjct: 413 DGIAVDWLARNLYWTDTGTDRIEVARLNGTSRKVLINEDLIEPRAIALAPELGWMFWTDW 472
Query: 239 NEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNR 298
NEKRPKIERS L+G ER+LLV + WPNGI LD+ K+YWCDAKTDKIE+ + DG +R
Sbjct: 473 NEKRPKIERSNLDGTERILLVNKDIVWPNGIALDLARWKIYWCDAKTDKIEVCNMDGTDR 532
Query: 299 RELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVIIER 346
RE+I +NLPH+FG+SLLGDY+YWTDWQRRS+DR +K+TG +REVI+++
Sbjct: 533 REVITDNLPHLFGLSLLGDYLYWTDWQRRSVDRAHKLTGGEREVIVDQ 580
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350422992|ref|XP_003493352.1| PREDICTED: low-density lipoprotein receptor-related protein 6-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/228 (59%), Positives = 172/228 (75%), Gaps = 18/228 (7%)
Query: 121 GLAIDW--LTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHP 178
+AID+ + E LYWTD E + +SLDG ++ + EVE+P
Sbjct: 369 AIAIDFDPVQEMLYWTDEEARAIRRASLDGSNQE----------------NIIITEVENP 412
Query: 179 DGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDW 238
DG+AVDW+ARNLYWTDTGTDRIEV RL GT RKVL+N DL+EPRAI L+P G++FW+DW
Sbjct: 413 DGIAVDWLARNLYWTDTGTDRIEVARLNGTSRKVLINEDLIEPRAIALAPELGWMFWTDW 472
Query: 239 NEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNR 298
NEKRPKIERS L+G ER+LLV + WPNGI LD+ K+YWCDAKTDKIE+ + DG +R
Sbjct: 473 NEKRPKIERSNLDGTERILLVNKDIVWPNGIALDLARWKIYWCDAKTDKIEVCNMDGTDR 532
Query: 299 RELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVIIER 346
RE+I +NLPH+FG+SLLGDY+YWTDWQRRS+DR +K+TG +REVI+++
Sbjct: 533 REVITDNLPHLFGLSLLGDYLYWTDWQRRSVDRAHKLTGGEREVIVDQ 580
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332017479|gb|EGI58202.1| Low-density lipoprotein receptor-related protein 6 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 130/228 (57%), Positives = 173/228 (75%), Gaps = 18/228 (7%)
Query: 121 GLAIDW--LTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHP 178
+AID+ E LYWTD +T + + LDG ++ + + EV +P
Sbjct: 349 AIAIDFDPAEELLYWTDEQTTTIRRAPLDGMSQQ----------------NVISTEVANP 392
Query: 179 DGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDW 238
DG+A+DW+ARNLYWTDTGTDRIEV RL+G +R+VLVN DL EPRAI L+P HG++FW+DW
Sbjct: 393 DGIAIDWIARNLYWTDTGTDRIEVARLDGKYRRVLVNEDLFEPRAIALAPEHGWMFWTDW 452
Query: 239 NEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNR 298
+EKRPKIERS L+G ER+LL+ + WPNGI LD++ K+YWCDAKTDKIE+ + DG +R
Sbjct: 453 SEKRPKIERSNLDGSERILLITKDIVWPNGIALDLERNKIYWCDAKTDKIEVSNMDGTDR 512
Query: 299 RELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVIIER 346
RE+I +NLPH+FG++LLGDY+YWTDWQRRSIDR +K+TG +REVI+++
Sbjct: 513 REVITDNLPHLFGLTLLGDYLYWTDWQRRSIDRAHKLTGGEREVIVDQ 560
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383857988|ref|XP_003704485.1| PREDICTED: low-density lipoprotein receptor-related protein 6 [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 132/228 (57%), Positives = 172/228 (75%), Gaps = 18/228 (7%)
Query: 121 GLAIDW--LTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHP 178
+AID+ + E LYWTD E + + +SLDG ++ + EV +P
Sbjct: 369 AIAIDFDPVQEMLYWTDEEAHAIRRASLDGTNQE----------------NIIITEVGNP 412
Query: 179 DGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDW 238
DG+AVDW+ARNLYWTDTGTDRIEV RL GT RKVL+N +L+EPRAI L+P HG++FW+DW
Sbjct: 413 DGIAVDWLARNLYWTDTGTDRIEVARLNGTSRKVLINEELIEPRAIALAPEHGWMFWTDW 472
Query: 239 NEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNR 298
NEKRPKIERS L+G ER LLV + WPNGI LD+ K+YWCDAKTDKIE+ + DG +R
Sbjct: 473 NEKRPKIERSNLDGTERTLLVTKDIVWPNGIALDLARWKIYWCDAKTDKIEVCNMDGTDR 532
Query: 299 RELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVIIER 346
RE+I +NLPH+FG++LLGDY+YWTDWQRRS+DR +K+TG +RE+I+++
Sbjct: 533 REVITDNLPHLFGLTLLGDYLYWTDWQRRSVDRAHKLTGGEREIIVDQ 580
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307186181|gb|EFN71887.1| Low-density lipoprotein receptor-related protein 6 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 133/228 (58%), Positives = 173/228 (75%), Gaps = 18/228 (7%)
Query: 121 GLAIDWLT--EKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHP 178
+AID+ T + LYWTD + + + LDG + ED+ EV +P
Sbjct: 373 AIAIDFDTVDKMLYWTDEQACAIRRAYLDGSSQ-----EDV-----------IVAEVVNP 416
Query: 179 DGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDW 238
DGVA+DW+ARNLYWTDTGTDRIEV RL GT+R+VLVN DL+EPRAI ++P HG +FW+DW
Sbjct: 417 DGVAIDWIARNLYWTDTGTDRIEVARLNGTNRRVLVNEDLIEPRAIAVAPEHGLMFWTDW 476
Query: 239 NEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNR 298
NEKRPKIERS L+G ER+ L+ + WPNGI LD++ K+YWCDAKTDKIE+ + DG +R
Sbjct: 477 NEKRPKIERSNLDGTERIALIIKDIVWPNGIALDLERGKIYWCDAKTDKIEVANMDGTDR 536
Query: 299 RELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVIIER 346
RE+I +NLPH+FG+SLLGDY+YWTDWQRRSIDR +K+TG++REVI+++
Sbjct: 537 REIITDNLPHLFGLSLLGDYLYWTDWQRRSIDRAHKLTGSNREVIVDQ 584
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307212491|gb|EFN88222.1| Low-density lipoprotein receptor-related protein 6 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 132/228 (57%), Positives = 170/228 (74%), Gaps = 18/228 (7%)
Query: 121 GLAIDW--LTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHP 178
+AID+ + E LYWTD + + + LDG ++ + EV +P
Sbjct: 440 AIAIDFDPVDEMLYWTDEQAFAIRRAYLDGSGQQ----------------NVIVTEVMNP 483
Query: 179 DGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDW 238
DG+A+DWVARN+YWTDTGTDRIEV RL GT RKVLVN DLVEPRAI ++P G++FW+DW
Sbjct: 484 DGIAIDWVARNMYWTDTGTDRIEVARLNGTRRKVLVNEDLVEPRAIAVAPDLGWMFWTDW 543
Query: 239 NEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNR 298
NEKRPKIERS L+ +R+LLV + WPNGI LD++ K+YWCDAKTDKIE+ + DG +R
Sbjct: 544 NEKRPKIERSNLDATDRILLVTKDISWPNGIALDLERLKIYWCDAKTDKIEVSNMDGTDR 603
Query: 299 RELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVIIER 346
RE+I +NLPH+FG+SLLGDY+YWTDWQRRSIDR +K+TG DREVI+++
Sbjct: 604 REVITDNLPHLFGLSLLGDYLYWTDWQRRSIDRAHKLTGGDREVIVDQ 651
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|387176490|gb|AFJ67362.1| arrow, partial [Apis mellifera] gi|387176492|gb|AFJ67363.1| arrow, partial [Apis mellifera] gi|387176494|gb|AFJ67364.1| arrow, partial [Apis mellifera] gi|387176496|gb|AFJ67365.1| arrow, partial [Apis mellifera] gi|387176498|gb|AFJ67366.1| arrow, partial [Apis mellifera] gi|387176500|gb|AFJ67367.1| arrow, partial [Apis mellifera] gi|387176502|gb|AFJ67368.1| arrow, partial [Apis mellifera] gi|387176504|gb|AFJ67369.1| arrow, partial [Apis mellifera] gi|387176506|gb|AFJ67370.1| arrow, partial [Apis mellifera] gi|387176508|gb|AFJ67371.1| arrow, partial [Apis mellifera] gi|387176510|gb|AFJ67372.1| arrow, partial [Apis mellifera] gi|387176512|gb|AFJ67373.1| arrow, partial [Apis mellifera] gi|387176514|gb|AFJ67374.1| arrow, partial [Apis mellifera] gi|387176516|gb|AFJ67375.1| arrow, partial [Apis mellifera] gi|387176518|gb|AFJ67376.1| arrow, partial [Apis mellifera] gi|387176520|gb|AFJ67377.1| arrow, partial [Apis mellifera] gi|387176522|gb|AFJ67378.1| arrow, partial [Apis mellifera] gi|387176524|gb|AFJ67379.1| arrow, partial [Apis mellifera] gi|387176526|gb|AFJ67380.1| arrow, partial [Apis mellifera] gi|387176530|gb|AFJ67382.1| arrow, partial [Apis mellifera] gi|387176532|gb|AFJ67383.1| arrow, partial [Apis mellifera] gi|387176534|gb|AFJ67384.1| arrow, partial [Apis mellifera] gi|387176536|gb|AFJ67385.1| arrow, partial [Apis mellifera] gi|387176538|gb|AFJ67386.1| arrow, partial [Apis mellifera] gi|387176540|gb|AFJ67387.1| arrow, partial [Apis mellifera] gi|387176542|gb|AFJ67388.1| arrow, partial [Apis mellifera] gi|387176544|gb|AFJ67389.1| arrow, partial [Apis mellifera] gi|387176546|gb|AFJ67390.1| arrow, partial [Apis mellifera] gi|387176548|gb|AFJ67391.1| arrow, partial [Apis mellifera] gi|387176550|gb|AFJ67392.1| arrow, partial [Apis mellifera] gi|387176552|gb|AFJ67393.1| arrow, partial [Apis mellifera] gi|387176554|gb|AFJ67394.1| arrow, partial [Apis mellifera] gi|387176556|gb|AFJ67395.1| arrow, partial [Apis mellifera] gi|387176558|gb|AFJ67396.1| arrow, partial [Apis mellifera] gi|387176560|gb|AFJ67397.1| arrow, partial [Apis mellifera] gi|387176562|gb|AFJ67398.1| arrow, partial [Apis mellifera] gi|387176564|gb|AFJ67399.1| arrow, partial [Apis mellifera] gi|387176566|gb|AFJ67400.1| arrow, partial [Apis mellifera] gi|387176568|gb|AFJ67401.1| arrow, partial [Apis mellifera] gi|387176570|gb|AFJ67402.1| arrow, partial [Apis mellifera] gi|387176572|gb|AFJ67403.1| arrow, partial [Apis mellifera] gi|387176574|gb|AFJ67404.1| arrow, partial [Apis mellifera] gi|387176576|gb|AFJ67405.1| arrow, partial [Apis mellifera] gi|387176578|gb|AFJ67406.1| arrow, partial [Apis mellifera] gi|387176580|gb|AFJ67407.1| arrow, partial [Apis mellifera] gi|387176582|gb|AFJ67408.1| arrow, partial [Apis mellifera] gi|387176584|gb|AFJ67409.1| arrow, partial [Apis mellifera] gi|410695600|gb|AFV74940.1| arrow, partial [Apis cerana] gi|410695602|gb|AFV74941.1| arrow, partial [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 129/214 (60%), Positives = 164/214 (76%), Gaps = 16/214 (7%)
Query: 133 WTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYW 192
WTD E + +SLDG ++ + T EV++PDG+AVDW+ARNLYW
Sbjct: 1 WTDEEARAIRRASLDGSNQE----------------NIITTEVKNPDGIAVDWLARNLYW 44
Query: 193 TDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNG 252
TDTGTDRIEV RL GT RKVL+N DL+EPRAI L+P G++FW+DWNEKRPKIERS L+G
Sbjct: 45 TDTGTDRIEVARLNGTSRKVLINEDLIEPRAIALAPELGWMFWTDWNEKRPKIERSNLDG 104
Query: 253 GERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGI 312
ER+LL+ + WPNGI LD+ K+YWCDAKTDKIE+ + DG NRRE+I +NLPH+FG+
Sbjct: 105 TERILLINKDIVWPNGIALDLARWKIYWCDAKTDKIEVCNMDGTNRREVITDNLPHLFGL 164
Query: 313 SLLGDYVYWTDWQRRSIDRVNKITGNDREVIIER 346
SLLGDY+YWTDWQRRS+DR +K+TG +REVI+++
Sbjct: 165 SLLGDYLYWTDWQRRSVDRAHKLTGGEREVIVDQ 198
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|387176528|gb|AFJ67381.1| arrow, partial [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 271 bits (692), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 128/214 (59%), Positives = 163/214 (76%), Gaps = 16/214 (7%)
Query: 133 WTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYW 192
WTD E + +SLDG ++ + EV++PDG+AVDW+ARNLYW
Sbjct: 1 WTDEEARAIRRASLDGSNQE----------------NIIXTEVKNPDGIAVDWLARNLYW 44
Query: 193 TDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNG 252
TDTGTDRIEV RL GT RKVL+N DL+EPRAI L+P G++FW+DWNEKRPKIERS L+G
Sbjct: 45 TDTGTDRIEVARLNGTSRKVLINEDLIEPRAIALAPELGWMFWTDWNEKRPKIERSNLDG 104
Query: 253 GERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGI 312
ER+LL+ + WPNGI LD+ K+YWCDAKTDKIE+ + DG NRRE+I +NLPH+FG+
Sbjct: 105 TERILLINKDIVWPNGIALDLARWKIYWCDAKTDKIEVCNMDGTNRREVITDNLPHLFGL 164
Query: 313 SLLGDYVYWTDWQRRSIDRVNKITGNDREVIIER 346
SLLGDY+YWTDWQRRS+DR +K+TG +REVI+++
Sbjct: 165 SLLGDYLYWTDWQRRSVDRAHKLTGGEREVIVDQ 198
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 357 | ||||||
| UNIPROTKB|F1NWV6 | 1607 | LRP6 "Uncharacterized protein" | 0.532 | 0.118 | 0.592 | 4.7e-94 | |
| UNIPROTKB|F5H7J9 | 1568 | LRP6 "Low-density lipoprotein | 0.532 | 0.121 | 0.597 | 7.3e-74 | |
| UNIPROTKB|O75581 | 1613 | LRP6 "Low-density lipoprotein | 0.532 | 0.117 | 0.597 | 8.3e-74 | |
| UNIPROTKB|F1PCS0 | 1613 | LRP6 "Uncharacterized protein" | 0.532 | 0.117 | 0.592 | 1.4e-73 | |
| MGI|MGI:1298218 | 1613 | Lrp6 "low density lipoprotein | 0.532 | 0.117 | 0.592 | 5.9e-73 | |
| RGD|1304749 | 1595 | Lrp6 "low density lipoprotein | 0.532 | 0.119 | 0.592 | 7.2e-73 | |
| ZFIN|ZDB-GENE-090821-1 | 1620 | lrp6 "low-density lipoprotein | 0.532 | 0.117 | 0.587 | 4.2e-72 | |
| UNIPROTKB|H0YGW5 | 1478 | LRP6 "Low-density lipoprotein | 0.532 | 0.128 | 0.597 | 1.5e-71 | |
| UNIPROTKB|F1NGT2 | 1540 | LRP5 "Uncharacterized protein" | 0.532 | 0.123 | 0.592 | 4.8e-71 | |
| UNIPROTKB|F1SQ65 | 1470 | LRP6 "Uncharacterized protein" | 0.532 | 0.129 | 0.592 | 7.9e-71 |
| UNIPROTKB|F1NWV6 LRP6 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 643 (231.4 bits), Expect = 4.7e-94, Sum P(2) = 4.7e-94
Identities = 119/201 (59%), Positives = 151/201 (75%)
Query: 154 LYWEDIDQPRAI--------ASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRL 205
+YW D D+ RAI S + T ++ HPDG+AVDWVARNLYWTDTGTDRIEV RL
Sbjct: 362 IYWTD-DEVRAIRRSFVDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRL 420
Query: 206 EGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGW 265
GT RK+L++ DL EPRAI L P GY++W+DW E PKIER+ L+G +R++LV LGW
Sbjct: 421 NGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEI-PKIERAALDGSDRIVLVNTSLGW 479
Query: 266 PNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQ 325
PNG+ LD K+YW DAKTDKIE+++ DG RR L+ + LPH+FG +LLGDYVYWTDWQ
Sbjct: 480 PNGLALDYAESKIYWGDAKTDKIEVMNADGTGRRVLVEDKLPHIFGFTLLGDYVYWTDWQ 539
Query: 326 RRSIDRVNKITGNDREVIIER 346
RRSI+RV+K T +RE+II++
Sbjct: 540 RRSIERVHKRTA-EREIIIDQ 559
|
|
| UNIPROTKB|F5H7J9 LRP6 "Low-density lipoprotein receptor-related protein 6" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 645 (232.1 bits), Expect = 7.3e-74, Sum P(2) = 7.3e-74
Identities = 120/201 (59%), Positives = 152/201 (75%)
Query: 154 LYWEDIDQPRAI--------ASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRL 205
+YW D D+ RAI S + T ++ HPDG+AVDWVARNLYWTDTGTDRIEV RL
Sbjct: 374 IYWTD-DEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRL 432
Query: 206 EGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGW 265
GT RK+L++ DL EPRAI L P GY++W+DW E PKIER+ L+G +RV+LV LGW
Sbjct: 433 NGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEI-PKIERAALDGSDRVVLVNTSLGW 491
Query: 266 PNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQ 325
PNG+ LD D K+YW DAKTDKIE+++ DG RR L+ + +PH+FG +LLGDYVYWTDWQ
Sbjct: 492 PNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQ 551
Query: 326 RRSIDRVNKITGNDREVIIER 346
RRSI+RV+K + +REVII++
Sbjct: 552 RRSIERVHKRSA-EREVIIDQ 571
|
|
| UNIPROTKB|O75581 LRP6 "Low-density lipoprotein receptor-related protein 6" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 645 (232.1 bits), Expect = 8.3e-74, Sum P(2) = 8.3e-74
Identities = 120/201 (59%), Positives = 152/201 (75%)
Query: 154 LYWEDIDQPRAI--------ASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRL 205
+YW D D+ RAI S + T ++ HPDG+AVDWVARNLYWTDTGTDRIEV RL
Sbjct: 374 IYWTD-DEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRL 432
Query: 206 EGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGW 265
GT RK+L++ DL EPRAI L P GY++W+DW E PKIER+ L+G +RV+LV LGW
Sbjct: 433 NGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEI-PKIERAALDGSDRVVLVNTSLGW 491
Query: 266 PNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQ 325
PNG+ LD D K+YW DAKTDKIE+++ DG RR L+ + +PH+FG +LLGDYVYWTDWQ
Sbjct: 492 PNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQ 551
Query: 326 RRSIDRVNKITGNDREVIIER 346
RRSI+RV+K + +REVII++
Sbjct: 552 RRSIERVHKRSA-EREVIIDQ 571
|
|
| UNIPROTKB|F1PCS0 LRP6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 644 (231.8 bits), Expect = 1.4e-73, Sum P(2) = 1.4e-73
Identities = 119/201 (59%), Positives = 152/201 (75%)
Query: 154 LYWEDIDQPRAI--------ASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRL 205
+YW D D+ RAI S + T ++ HPDG+AVDWVARNLYWTDTGTDRIEV RL
Sbjct: 374 IYWTD-DEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRL 432
Query: 206 EGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGW 265
GT RK+L++ DL EPRAI L P GY++W+DW E PKIER+ L+G +RV+LV LGW
Sbjct: 433 NGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEI-PKIERAALDGSDRVVLVNTSLGW 491
Query: 266 PNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQ 325
PNG+ LD D K+YW DAKTDKIE+++ DG RR L+ + +PH+FG +LLGDYVYWTDWQ
Sbjct: 492 PNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQ 551
Query: 326 RRSIDRVNKITGNDREVIIER 346
RRSI+RV+K + +RE+II++
Sbjct: 552 RRSIERVHKRSA-EREIIIDQ 571
|
|
| MGI|MGI:1298218 Lrp6 "low density lipoprotein receptor-related protein 6" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 639 (230.0 bits), Expect = 5.9e-73, Sum P(2) = 5.9e-73
Identities = 119/201 (59%), Positives = 151/201 (75%)
Query: 154 LYWEDIDQPRAI--------ASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRL 205
+YW D D+ RAI S + T ++ HPDG+AVDWVARNLYWTDTGTDRIEV RL
Sbjct: 374 IYWTD-DEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRL 432
Query: 206 EGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGW 265
GT RK+L++ DL EPRAI L P GY++W+DW E PKIER+ L+G +RV+LV LGW
Sbjct: 433 NGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEI-PKIERAALDGSDRVVLVNTSLGW 491
Query: 266 PNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQ 325
PNG+ LD D +YW DAKTDKIE+++ DG RR L+ + +PH+FG +LLGDYVYWTDWQ
Sbjct: 492 PNGLALDYDEGTIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQ 551
Query: 326 RRSIDRVNKITGNDREVIIER 346
RRSI+RV+K + +REVII++
Sbjct: 552 RRSIERVHKRSA-EREVIIDQ 571
|
|
| RGD|1304749 Lrp6 "low density lipoprotein receptor-related protein 6" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 639 (230.0 bits), Expect = 7.2e-73, Sum P(2) = 7.2e-73
Identities = 119/201 (59%), Positives = 151/201 (75%)
Query: 154 LYWEDIDQPRAI--------ASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRL 205
+YW D D+ RAI S + T ++ HPDG+AVDWVARNLYWTDTGTDRIEV RL
Sbjct: 356 VYWTD-DEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRL 414
Query: 206 EGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGW 265
GT RK+L++ DL EPRAI L P GY++W+DW E PKIER+ L+G +RV+LV LGW
Sbjct: 415 NGTMRKILISEDLEEPRAIVLDPMAGYMYWTDWGEI-PKIERAALDGSDRVVLVNTSLGW 473
Query: 266 PNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQ 325
PNG+ LD D +YW DAKTDKIE+++ DG RR L+ + +PH+FG +LLGDYVYWTDWQ
Sbjct: 474 PNGLALDYDEGTIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQ 533
Query: 326 RRSIDRVNKITGNDREVIIER 346
RRSI+RV+K + +REVII++
Sbjct: 534 RRSIERVHKRSA-EREVIIDQ 553
|
|
| ZFIN|ZDB-GENE-090821-1 lrp6 "low-density lipoprotein receptor-related protein 6" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 641 (230.7 bits), Expect = 4.2e-72, Sum P(2) = 4.2e-72
Identities = 118/201 (58%), Positives = 150/201 (74%)
Query: 154 LYWEDIDQPRAIASYKLP--------TIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRL 205
+YW D D+ RAI L T +V HPDG+AVDW+ARNLYWTDTGTDRIEV RL
Sbjct: 378 IYWTD-DEVRAIRRSLLDGSDAQLVVTSQVNHPDGIAVDWIARNLYWTDTGTDRIEVTRL 436
Query: 206 EGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGW 265
GT RK+L++ DL EPRAI L P GY++W+DW E PKIER+ L+G +R+++V LGW
Sbjct: 437 NGTMRKILISEDLDEPRAIVLDPVAGYMYWTDWGEV-PKIERAALDGSQRMVMVNTSLGW 495
Query: 266 PNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQ 325
PNG+ LD K+YW DAKTD IE+++ DG+ RR L+ +NLPHVFG +LLGDY+YWTDWQ
Sbjct: 496 PNGLALDYSERKIYWGDAKTDVIEVMEMDGSGRRVLLEDNLPHVFGFTLLGDYIYWTDWQ 555
Query: 326 RRSIDRVNKITGNDREVIIER 346
RRSI+RV+K +REVII++
Sbjct: 556 RRSIERVHK-RSTEREVIIDQ 575
|
|
| UNIPROTKB|H0YGW5 LRP6 "Low-density lipoprotein receptor-related protein 6" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 645 (232.1 bits), Expect = 1.5e-71, Sum P(2) = 1.5e-71
Identities = 120/201 (59%), Positives = 152/201 (75%)
Query: 154 LYWEDIDQPRAI--------ASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRL 205
+YW D D+ RAI S + T ++ HPDG+AVDWVARNLYWTDTGTDRIEV RL
Sbjct: 239 IYWTD-DEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRL 297
Query: 206 EGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGW 265
GT RK+L++ DL EPRAI L P GY++W+DW E PKIER+ L+G +RV+LV LGW
Sbjct: 298 NGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEI-PKIERAALDGSDRVVLVNTSLGW 356
Query: 266 PNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQ 325
PNG+ LD D K+YW DAKTDKIE+++ DG RR L+ + +PH+FG +LLGDYVYWTDWQ
Sbjct: 357 PNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQ 416
Query: 326 RRSIDRVNKITGNDREVIIER 346
RRSI+RV+K + +REVII++
Sbjct: 417 RRSIERVHKRSA-EREVIIDQ 436
|
|
| UNIPROTKB|F1NGT2 LRP5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 642 (231.1 bits), Expect = 4.8e-71, Sum P(2) = 4.8e-71
Identities = 119/201 (59%), Positives = 153/201 (76%)
Query: 154 LYWEDIDQPRAIA-SY-------KLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRL 205
+YW D D RAI +Y L T E+ HPDG+AVDWVARNLYWTDTGTDRIEV RL
Sbjct: 310 IYWTD-DDVRAIRRAYLDGSGAQTLVTTEINHPDGIAVDWVARNLYWTDTGTDRIEVTRL 368
Query: 206 EGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGW 265
GT RK+L++ +L EPRAI L+P GY++W+DW E PKIE + L+G ER +LV LGW
Sbjct: 369 NGTSRKILISENLDEPRAIVLNPVMGYMYWTDWGES-PKIECAYLDGSERRVLVNTSLGW 427
Query: 266 PNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQ 325
PNG+ LD++ +KLYW DAKTDKIE+I+ DG R+ L+ + LPH+FG +LLGDY+YWTDWQ
Sbjct: 428 PNGLALDLEEDKLYWGDAKTDKIEVINVDGTMRKTLLEDKLPHIFGFTLLGDYIYWTDWQ 487
Query: 326 RRSIDRVNKITGNDREVIIER 346
RRSI+RV+KI + R++II++
Sbjct: 488 RRSIERVHKIRAS-RDIIIDQ 507
|
|
| UNIPROTKB|F1SQ65 LRP6 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 644 (231.8 bits), Expect = 7.9e-71, Sum P(2) = 7.9e-71
Identities = 119/201 (59%), Positives = 152/201 (75%)
Query: 154 LYWEDIDQPRAI--------ASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRL 205
+YW D D+ RAI S + T ++ HPDG+AVDWVARNLYWTDTGTDRIEV RL
Sbjct: 231 IYWTD-DEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRL 289
Query: 206 EGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGW 265
GT RK+L++ DL EPRAI L P GY++W+DW E PKIER+ L+G +RV+LV LGW
Sbjct: 290 NGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEI-PKIERAALDGSDRVVLVNTSLGW 348
Query: 266 PNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQ 325
PNG+ LD D K+YW DAKTDKIE+++ DG RR L+ + +PH+FG +LLGDYVYWTDWQ
Sbjct: 349 PNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQ 408
Query: 326 RRSIDRVNKITGNDREVIIER 346
RRSI+RV+K + +RE+II++
Sbjct: 409 RRSIERVHKRSA-EREIIIDQ 428
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O75581 | LRP6_HUMAN | No assigned EC number | 0.5394 | 0.5826 | 0.1289 | yes | N/A |
| O88572 | LRP6_MOUSE | No assigned EC number | 0.5350 | 0.5826 | 0.1289 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 357 | |||
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 1e-10 | |
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 1e-09 | |
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 3e-09 | |
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 2e-07 | |
| pfam00058 | 42 | pfam00058, Ldl_recept_b, Low-density lipoprotein r | 3e-07 | |
| COG3391 | 381 | COG3391, COG3391, Uncharacterized conserved protei | 9e-06 | |
| pfam00058 | 42 | pfam00058, Ldl_recept_b, Low-density lipoprotein r | 4e-05 | |
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 1e-04 | |
| pfam00058 | 42 | pfam00058, Ldl_recept_b, Low-density lipoprotein r | 2e-04 | |
| pfam00058 | 42 | pfam00058, Ldl_recept_b, Low-density lipoprotein r | 0.002 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 1e-10
Identities = 21/36 (58%), Positives = 27/36 (75%)
Query: 175 VEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHR 210
+ HP+G+AVDW+ LYWTD G D IEV L+GT+R
Sbjct: 8 LGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 1e-09
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 258 LVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNR 298
L+ LG PNG+ +D +LYW D D IE+ + DG NR
Sbjct: 3 LLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 3e-09
Identities = 19/41 (46%), Positives = 31/41 (75%)
Query: 111 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKR 151
++++GL P+GLA+DW+ +LYWTD + +EV++LDG R
Sbjct: 3 LLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 2e-07
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 211 KVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGER 255
+ L+++ L P + + G L+W+DW IE + L+G R
Sbjct: 1 RTLLSSGLGHPNGLAVDWIEGRLYWTDW--GLDVIEVANLDGTNR 43
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
| >gnl|CDD|215683 pfam00058, Ldl_recept_b, Low-density lipoprotein receptor repeat class B | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 3e-07
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 231 GYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLD 272
G L+W+D + R I + LNG +R L + L WPNGI +D
Sbjct: 1 GRLYWTDSSL-RASISVADLNGSDRRTLFSEDLQWPNGIAVD 41
|
This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure. Length = 42 |
| >gnl|CDD|225926 COG3391, COG3391, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 9e-06
Identities = 39/215 (18%), Positives = 73/215 (33%), Gaps = 32/215 (14%)
Query: 98 CTFDGNNVGSKHNVITNGLIT-------PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKK 150
T D N V S + TN ++ P GLA+D + +Y ++ VS +D
Sbjct: 91 TTGDSNTV-SVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT 149
Query: 151 RKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEG--- 207
KV + P GVAVD +Y T++ + + V G
Sbjct: 150 NKVTATIPVG---------------NTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSV 194
Query: 208 -THRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDR---L 263
+ P I + P ++ ++ + ++ + D
Sbjct: 195 VRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNV--LKIDTATGNVTATDLPVGS 252
Query: 264 GWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNR 298
G P G+ +D + Y +++ + +ID +
Sbjct: 253 GAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRV 287
|
Length = 381 |
| >gnl|CDD|215683 pfam00058, Ldl_recept_b, Low-density lipoprotein receptor repeat class B | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 4e-05
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 188 RNLYWTDTGTD-RIEVCRLEGTHRKVLVNTDLVEPRAITLSP 228
LYWTD+ I V L G+ R+ L + DL P I + P
Sbjct: 1 GRLYWTDSSLRASISVADLNGSDRRTLFSEDLQWPNGIAVDP 42
|
This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure. Length = 42 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 1e-04
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 301 LINENLPHVFGISL--LGDYVYWTDWQRRSIDRVNKITGNDR 340
L++ L H G+++ + +YWTDW I+ N + G +R
Sbjct: 3 LLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVAN-LDGTNR 43
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
| >gnl|CDD|215683 pfam00058, Ldl_recept_b, Low-density lipoprotein receptor repeat class B | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 2e-04
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 129 EKLYWTDSET-NKLEVSSLDGKKRKVLYWEDIDQPRAIA 166
+LYWTDS + V+ L+G R+ L+ ED+ P IA
Sbjct: 1 GRLYWTDSSLRASISVADLNGSDRRTLFSEDLQWPNGIA 39
|
This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure. Length = 42 |
| >gnl|CDD|215683 pfam00058, Ldl_recept_b, Low-density lipoprotein receptor repeat class B | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.002
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 276 EKLYWCDAKTD-KIEMIDFDGNNRRELINENLPHVFGISL 314
+LYW D+ I + D +G++RR L +E+L GI++
Sbjct: 1 GRLYWTDSSLRASISVADLNGSDRRTLFSEDLQWPNGIAV 40
|
This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure. Length = 42 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 357 | |||
| KOG1214|consensus | 1289 | 100.0 | ||
| KOG1214|consensus | 1289 | 100.0 | ||
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.95 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.91 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.91 | |
| KOG1215|consensus | 877 | 99.9 | ||
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.9 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.78 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.75 | |
| KOG4659|consensus | 1899 | 99.75 | ||
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 99.73 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 99.66 | |
| KOG4659|consensus | 1899 | 99.65 | ||
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 99.64 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.64 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.63 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 99.63 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.61 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.55 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 99.54 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 99.48 | |
| KOG1215|consensus | 877 | 99.47 | ||
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 99.46 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 99.44 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.43 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.41 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 99.37 | |
| KOG1520|consensus | 376 | 99.36 | ||
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 99.32 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 99.3 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.26 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 99.24 | |
| KOG1520|consensus | 376 | 99.21 | ||
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.2 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.17 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 99.13 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.96 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.94 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 98.91 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.89 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.87 | |
| KOG4499|consensus | 310 | 98.87 | ||
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 98.87 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 98.87 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 98.84 | |
| PF00058 | 42 | Ldl_recept_b: Low-density lipoprotein receptor rep | 98.84 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.83 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.83 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.83 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.82 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.79 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.78 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.77 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.76 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.75 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.74 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.74 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.74 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 98.73 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 98.72 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.72 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 98.72 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 98.71 | |
| PF00058 | 42 | Ldl_recept_b: Low-density lipoprotein receptor rep | 98.71 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.71 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.65 | |
| COG2133 | 399 | Glucose/sorbosone dehydrogenases [Carbohydrate tra | 98.57 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 98.53 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 98.52 | |
| KOG4499|consensus | 310 | 98.5 | ||
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.46 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 98.42 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.37 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 98.34 | |
| smart00135 | 43 | LY Low-density lipoprotein-receptor YWTD domain. T | 98.34 | |
| smart00135 | 43 | LY Low-density lipoprotein-receptor YWTD domain. T | 98.29 | |
| COG2133 | 399 | Glucose/sorbosone dehydrogenases [Carbohydrate tra | 98.16 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 98.05 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 98.05 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.03 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 97.93 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.93 | |
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 97.85 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.8 | |
| KOG0285|consensus | 460 | 97.63 | ||
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 97.59 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.57 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.47 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 97.45 | |
| KOG0291|consensus | 893 | 97.45 | ||
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 97.43 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 97.3 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 97.25 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.19 | |
| KOG0291|consensus | 893 | 97.18 | ||
| KOG1446|consensus | 311 | 96.93 | ||
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 96.92 | |
| KOG0285|consensus | 460 | 96.88 | ||
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 96.87 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.8 | |
| PF05787 | 524 | DUF839: Bacterial protein of unknown function (DUF | 96.78 | |
| KOG0279|consensus | 315 | 96.78 | ||
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 96.67 | |
| KOG0315|consensus | 311 | 96.63 | ||
| PF05787 | 524 | DUF839: Bacterial protein of unknown function (DUF | 96.54 | |
| KOG0272|consensus | 459 | 96.42 | ||
| PTZ00420 | 568 | coronin; Provisional | 96.41 | |
| PTZ00421 | 493 | coronin; Provisional | 96.32 | |
| KOG0263|consensus | 707 | 96.26 | ||
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 96.22 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 96.14 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 96.05 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 96.02 | |
| KOG4649|consensus | 354 | 96.0 | ||
| KOG0315|consensus | 311 | 95.98 | ||
| PF01731 | 86 | Arylesterase: Arylesterase; InterPro: IPR002640 Th | 95.91 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 95.84 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 95.79 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 95.63 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 95.62 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 95.6 | |
| PF01731 | 86 | Arylesterase: Arylesterase; InterPro: IPR002640 Th | 95.53 | |
| KOG0268|consensus | 433 | 95.46 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 95.33 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 95.27 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 95.09 | |
| KOG0273|consensus | 524 | 94.91 | ||
| KOG4378|consensus | 673 | 94.85 | ||
| KOG1446|consensus | 311 | 94.84 | ||
| KOG0268|consensus | 433 | 94.77 | ||
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 94.76 | |
| KOG0318|consensus | 603 | 94.41 | ||
| KOG0310|consensus | 487 | 94.11 | ||
| KOG4328|consensus | 498 | 94.01 | ||
| KOG0281|consensus | 499 | 93.97 | ||
| KOG0272|consensus | 459 | 93.58 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 93.42 | |
| KOG1274|consensus | 933 | 93.33 | ||
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 93.24 | |
| KOG0293|consensus | 519 | 93.23 | ||
| KOG0318|consensus | 603 | 93.22 | ||
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 93.09 | |
| KOG0281|consensus | 499 | 92.83 | ||
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 92.74 | |
| KOG0276|consensus | 794 | 92.65 | ||
| COG4247 | 364 | Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph | 92.6 | |
| KOG0266|consensus | 456 | 92.54 | ||
| KOG0279|consensus | 315 | 92.49 | ||
| KOG4649|consensus | 354 | 92.46 | ||
| KOG0289|consensus | 506 | 92.43 | ||
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 92.41 | |
| KOG0646|consensus | 476 | 92.35 | ||
| KOG0266|consensus | 456 | 92.31 | ||
| KOG4378|consensus | 673 | 92.28 | ||
| KOG0294|consensus | 362 | 92.04 | ||
| KOG0303|consensus | 472 | 91.98 | ||
| COG3211 | 616 | PhoX Predicted phosphatase [General function predi | 91.95 | |
| PTZ00421 | 493 | coronin; Provisional | 91.81 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 91.51 | |
| KOG0282|consensus | 503 | 91.46 | ||
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 90.9 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 90.77 | |
| KOG0282|consensus | 503 | 90.53 | ||
| KOG2048|consensus | 691 | 90.34 | ||
| KOG0292|consensus | 1202 | 90.23 | ||
| smart00284 | 255 | OLF Olfactomedin-like domains. | 90.15 | |
| KOG0650|consensus | 733 | 90.09 | ||
| KOG0269|consensus | 839 | 89.87 | ||
| KOG0263|consensus | 707 | 89.65 | ||
| KOG0645|consensus | 312 | 89.26 | ||
| smart00284 | 255 | OLF Olfactomedin-like domains. | 89.11 | |
| COG3211 | 616 | PhoX Predicted phosphatase [General function predi | 88.79 | |
| KOG0303|consensus | 472 | 88.51 | ||
| KOG2106|consensus | 626 | 88.35 | ||
| KOG0289|consensus | 506 | 88.16 | ||
| KOG0319|consensus | 775 | 88.16 | ||
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 87.97 | |
| KOG4441|consensus | 571 | 87.64 | ||
| KOG4328|consensus | 498 | 87.36 | ||
| KOG2139|consensus | 445 | 87.28 | ||
| KOG1539|consensus | 910 | 87.23 | ||
| KOG2111|consensus | 346 | 87.19 | ||
| KOG1274|consensus | 933 | 87.09 | ||
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 87.01 | |
| KOG0310|consensus | 487 | 86.62 | ||
| PTZ00420 | 568 | coronin; Provisional | 86.54 | |
| KOG1036|consensus | 323 | 86.02 | ||
| KOG3914|consensus | 390 | 85.96 | ||
| KOG0270|consensus | 463 | 85.83 | ||
| KOG0284|consensus | 464 | 85.49 | ||
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 84.61 | |
| KOG0286|consensus | 343 | 84.23 | ||
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 84.13 | |
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 83.82 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 83.67 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 82.73 | |
| COG4247 | 364 | Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph | 82.36 | |
| KOG2110|consensus | 391 | 81.37 | ||
| KOG2110|consensus | 391 | 80.96 | ||
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 80.23 |
| >KOG1214|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=285.67 Aligned_cols=243 Identities=35% Similarity=0.646 Sum_probs=219.3
Q ss_pred cCCEEEEEeCCCCeEEEEEcCCCCcce--eEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecC
Q psy13635 81 KKSMVCWTDHGTEMISCCTFDGNNVGS--KHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWED 158 (357)
Q Consensus 81 ~~~~ly~~d~~~~~I~~~~~~g~~~~~--~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~ 158 (357)
....|.++. ..+|.+..++|..... ..+++.-.-.-|.||++|...+++||+|.....|.+.++.|...+.++.++
T Consensus 989 ~gt~LL~aq--g~~I~~lplng~~~~K~~ak~~l~~p~~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~ 1066 (1289)
T KOG1214|consen 989 VGTFLLYAQ--GQQIGYLPLNGTRLQKDAAKTLLSLPGSIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSG 1066 (1289)
T ss_pred CcceEEEec--cceEEEeecCcchhchhhhhceEecccceeeeeecccccceEEEeecCCCccccccccCCCCceeeccc
Confidence 355677764 3589999999987532 233455555679999999999999999999999999999999999998655
Q ss_pred CCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeC
Q psy13635 159 IDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDW 238 (357)
Q Consensus 159 ~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~ 238 (357)
+ ..|.||||||..+++||+|+..++|.++.+||+.+++++.++|-+|++|++|+.+|.|||+||
T Consensus 1067 L----------------~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~tdLVNPR~iv~D~~rgnLYwtDW 1130 (1289)
T KOG1214|consen 1067 L----------------ISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYTDLVNPRAIVVDPIRGNLYWTDW 1130 (1289)
T ss_pred C----------------CCccceeeeeccceeeeeccccchhheeecCCceeeEEEeecccCcceEEeecccCceeeccc
Confidence 4 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEECCE
Q psy13635 239 NEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDY 318 (357)
Q Consensus 239 ~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~~~~ 318 (357)
...+.+|++.+|||+++++++.+.+..|+||++|++...|-|+|++++++..+.++|.+++.++ +.++.|++|.-++++
T Consensus 1131 nRenPkIets~mDG~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~gRR~i~-~~LqYPF~itsy~~~ 1209 (1289)
T KOG1214|consen 1131 NRENPKIETSSMDGENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTGRRVIQ-NNLQYPFSITSYADH 1209 (1289)
T ss_pred cccCCcceeeccCCccceEEeecccCCCCCceeCcccceeeEEecCCcceeEecCCCCcchhhh-hcccCceeeeecccc
Confidence 9888999999999999999999999999999999999999999999999999999999998665 589999999999999
Q ss_pred EEEEeCCCCeEEEEeCccCceeEE
Q psy13635 319 VYWTDWQRRSIDRVNKITGNDREV 342 (357)
Q Consensus 319 ly~td~~~~~I~~~~~~~g~~~~~ 342 (357)
+|||||+.++|..+++..++....
T Consensus 1210 fY~TDWk~n~vvsv~~~~~~~td~ 1233 (1289)
T KOG1214|consen 1210 FYHTDWKRNGVVSVNKHSGQFTDE 1233 (1289)
T ss_pred ceeeccccCceEEeeccccccccc
Confidence 999999999999999977765543
|
|
| >KOG1214|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=275.81 Aligned_cols=266 Identities=29% Similarity=0.544 Sum_probs=226.7
Q ss_pred cCCCCeEEEEEeCCcEEEEEcCCCC-----cceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEE
Q psy13635 37 HHVAAQMLLFATSKDIRIANLSRPL-----KPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV 111 (357)
Q Consensus 37 ~~~~~~~l~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~ 111 (357)
+....-+|+++....|.+..+.+.. ..+++.-...-++|||||..+.++||+|.....|.|.+++|.+ .+++
T Consensus 986 p~~~gt~LL~aqg~~I~~lplng~~~~K~~ak~~l~~p~~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~E---p~ti 1062 (1289)
T KOG1214|consen 986 PPSVGTFLLYAQGQQIGYLPLNGTRLQKDAAKTLLSLPGSIIVGIDFDCRERMVYWTDVAGRSISRASLEGAE---PETI 1062 (1289)
T ss_pred CCCCcceEEEeccceEEEeecCcchhchhhhhceEecccceeeeeecccccceEEEeecCCCccccccccCCC---Ccee
Confidence 3445568999999999998887732 2233444555689999999999999999999999999999984 6888
Q ss_pred EeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEE
Q psy13635 112 ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLY 191 (357)
Q Consensus 112 ~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY 191 (357)
+..++.+|+||||||.++++||+|+...+|.++.+||+.+++++..++. .|.+|++|+..++||
T Consensus 1063 ~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~tdLV----------------NPR~iv~D~~rgnLY 1126 (1289)
T KOG1214|consen 1063 VNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYTDLV----------------NPRAIVVDPIRGNLY 1126 (1289)
T ss_pred ecccCCCccceeeeeccceeeeeccccchhheeecCCceeeEEEeeccc----------------CcceEEeecccCcee
Confidence 9999999999999999999999999999999999999999999977765 566677899999999
Q ss_pred EEeCCCC--eEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEE
Q psy13635 192 WTDTGTD--RIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGI 269 (357)
Q Consensus 192 ~td~~~~--~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~gi 269 (357)
|+|+... +|.+.++||+++++++.+++.-|+||++||....|.|+|.+++ +++....+|..++++. ++|++|.+|
T Consensus 1127 wtDWnRenPkIets~mDG~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~--rleC~~p~g~gRR~i~-~~LqYPF~i 1203 (1289)
T KOG1214|consen 1127 WTDWNRENPKIETSSMDGENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTK--RLECTLPDGTGRRVIQ-NNLQYPFSI 1203 (1289)
T ss_pred eccccccCCcceeeccCCccceEEeecccCCCCCceeCcccceeeEEecCCc--ceeEecCCCCcchhhh-hcccCceee
Confidence 9999864 8999999999999999999999999999999999999999965 9999999999999887 679999999
Q ss_pred EEecCCCEEEEEeCCCCeEEEEeCCCCCe-EEEecCCCCceEEEEEE-----CCEEEEEeCCC
Q psy13635 270 TLDVDNEKLYWCDAKTDKIEMIDFDGNNR-RELINENLPHVFGISLL-----GDYVYWTDWQR 326 (357)
Q Consensus 270 aid~~~~~lY~~d~~~~~I~~~~~dG~~~-~~i~~~~~~~p~gia~~-----~~~ly~td~~~ 326 (357)
+-+ ++++||+|++.++|.++++.+..- ...+..+..+.+||... .+.-|.++-+.
T Consensus 1204 tsy--~~~fY~TDWk~n~vvsv~~~~~~~td~~~p~~~s~lyGItav~~~Cp~gstpCSedNG 1264 (1289)
T KOG1214|consen 1204 TSY--ADHFYHTDWKRNGVVSVNKHSGQFTDEYLPEQRSHLYGITAVYPYCPTGSTPCSEDNG 1264 (1289)
T ss_pred eec--cccceeeccccCceEEeeccccccccccccccccceEEEEeccccCCCCCCcccccCC
Confidence 975 666999999999999999976544 33444556678888653 35555555443
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-24 Score=225.27 Aligned_cols=264 Identities=20% Similarity=0.241 Sum_probs=202.7
Q ss_pred eccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeC--------------CcCCceeEEEEcCCCeE
Q psy13635 66 IIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN--------------GLITPDGLAIDWLTEKL 131 (357)
Q Consensus 66 ~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~--------------~~~~p~glavd~~~~~l 131 (357)
+...+..|.++++|..++.||++|..+++|.+++.+|.. ...+.. .+..|.||++|+.++.|
T Consensus 563 ~~s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~----i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~L 638 (1057)
T PLN02919 563 LTSPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNF----IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLL 638 (1057)
T ss_pred ccccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCE----EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEE
Confidence 345678899999999899999999999999999998863 222211 25689999999877889
Q ss_pred EEEeCCCCEEEEEEcCCCceEEEEecCCCC---cceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCC
Q psy13635 132 YWTDSETNKLEVSSLDGKKRKVLYWEDIDQ---PRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGT 208 (357)
Q Consensus 132 y~td~~~~~I~~~~~~g~~~~~~~~~~~~~---p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~ 208 (357)
|++|..+++|+++++.+....++...+... ..+... ....++.|.++++|+.++.||+++.++++|.+++..+.
T Consensus 639 YVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~---~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g 715 (1057)
T PLN02919 639 YVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKG---TSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDG 715 (1057)
T ss_pred EEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhh---hHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCC
Confidence 999999999999999887776665432110 000000 01236789999999889999999999999999998655
Q ss_pred ceEEEec--------------CCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEee--------------
Q psy13635 209 HRKVLVN--------------TDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVK-------------- 260 (357)
Q Consensus 209 ~~~~~~~--------------~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~-------------- 260 (357)
....+.. ..+..|.||+++|.++.||++|... ++|.++++++.....+..
T Consensus 716 ~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n--~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~ 793 (1057)
T PLN02919 716 VTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES--SSIRALDLKTGGSRLLAGGDPTFSDNLFKFGD 793 (1057)
T ss_pred eEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC--CeEEEEECCCCcEEEEEecccccCcccccccC
Confidence 4433321 1356899999999877899999985 599999987554333221
Q ss_pred -------CCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEec-------------CCCCceEEEEEE-CCEE
Q psy13635 261 -------DRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELIN-------------ENLPHVFGISLL-GDYV 319 (357)
Q Consensus 261 -------~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~-------------~~~~~p~gia~~-~~~l 319 (357)
..+..|.|+++| .+|.||++|..+++|.+++.++.....+.. .++..|.||+++ +|.+
T Consensus 794 ~dG~g~~~~l~~P~Gvavd-~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~l 872 (1057)
T PLN02919 794 HDGVGSEVLLQHPLGVLCA-KDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRL 872 (1057)
T ss_pred CCCchhhhhccCCceeeEe-CCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCE
Confidence 125579999999 577899999999999999998765554432 235689999998 5899
Q ss_pred EEEeCCCCeEEEEeCccCce
Q psy13635 320 YWTDWQRRSIDRVNKITGND 339 (357)
Q Consensus 320 y~td~~~~~I~~~~~~~g~~ 339 (357)
|++|..+++|++++..+++.
T Consensus 873 yVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 873 FVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEEECCCCEEEEEECCCCcc
Confidence 99999999999999877664
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-21 Score=204.01 Aligned_cols=227 Identities=21% Similarity=0.313 Sum_probs=174.2
Q ss_pred EEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCc-ceeeeeccCcccccCCceEEEeCCCCe
Q psy13635 111 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQP-RAIASYKLPTIEVEHPDGVAVDWVARN 189 (357)
Q Consensus 111 ~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p-~~i~~~~~~~~~~~~p~glavD~~~~~ 189 (357)
++..++..|.++|+|..++.||++|..+++|++++.+|.....+...+.... -+- +....++.|.||++|+.++.
T Consensus 562 ~~~s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~----~~~a~f~~P~GIavd~~gn~ 637 (1057)
T PLN02919 562 LLTSPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGS----FEDATFNRPQGLAYNAKKNL 637 (1057)
T ss_pred cccccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCc----hhccccCCCcEEEEeCCCCE
Confidence 5567789999999998889999999999999999999987655543221100 000 01346789999999988889
Q ss_pred EEEEeCCCCeEEEEEcCCCceEEEecC----------------CCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCC
Q psy13635 190 LYWTDTGTDRIEVCRLEGTHRKVLVNT----------------DLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGG 253 (357)
Q Consensus 190 lY~td~~~~~I~~~~~~g~~~~~~~~~----------------~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~ 253 (357)
|||+|..+++|+++++.+....++... .+..|.+++++|.++.||+++.+. ++|++.+..+.
T Consensus 638 LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~--~~I~v~d~~~g 715 (1057)
T PLN02919 638 LYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ--HQIWEYNISDG 715 (1057)
T ss_pred EEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC--CeEEEEECCCC
Confidence 999999999999999887766655321 156899999999889999999985 59999987655
Q ss_pred ceEEEee--------------CCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEec----------------
Q psy13635 254 ERVLLVK--------------DRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELIN---------------- 303 (357)
Q Consensus 254 ~~~~~~~--------------~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~---------------- 303 (357)
....+.. ..+..|.||++++.++.||++|..+++|+++++++.....+..
T Consensus 716 ~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d 795 (1057)
T PLN02919 716 VTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD 795 (1057)
T ss_pred eEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence 4433221 1356899999998888899999999999999987544332221
Q ss_pred -----CCCCceEEEEEE-CCEEEEEeCCCCeEEEEeCccCceeEEE
Q psy13635 304 -----ENLPHVFGISLL-GDYVYWTDWQRRSIDRVNKITGNDREVI 343 (357)
Q Consensus 304 -----~~~~~p~gia~~-~~~ly~td~~~~~I~~~~~~~g~~~~~i 343 (357)
..+.+|.|++++ +|.+|++|+.+++|.+++..++...++.
T Consensus 796 G~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tia 841 (1057)
T PLN02919 796 GVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLA 841 (1057)
T ss_pred CchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEe
Confidence 125689999998 5889999999999999998656555443
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-21 Score=171.02 Aligned_cols=226 Identities=27% Similarity=0.328 Sum_probs=170.5
Q ss_pred EEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceE
Q psy13635 73 GAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRK 152 (357)
Q Consensus 73 ~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~ 152 (357)
+.|+.+++.++.|||+|...+.|++++.++.. ..+...+ .|.|++++..++.+|+++... +.++++.....+
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~----~~~~~~~--~~~G~~~~~~~g~l~v~~~~~--~~~~d~~~g~~~ 73 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGE----VEVIDLP--GPNGMAFDRPDGRLYVADSGG--IAVVDPDTGKVT 73 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTE----EEEEESS--SEEEEEEECTTSEEEEEETTC--EEEEETTTTEEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCe----EEEEecC--CCceEEEEccCCEEEEEEcCc--eEEEecCCCcEE
Confidence 56889999899999999999999999999874 3333322 299999996689999999654 444487766666
Q ss_pred EEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCC--------CeEEEEEcCCCceEEEecCCCCCceEE
Q psy13635 153 VLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGT--------DRIEVCRLEGTHRKVLVNTDLVEPRAI 224 (357)
Q Consensus 153 ~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~--------~~I~~~~~~g~~~~~~~~~~~~~P~gi 224 (357)
.+...... ...+..|+++++|+ .|+||+++... ++|++++.+|+ ...+. ..+..|+||
T Consensus 74 ~~~~~~~~-----------~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~-~~~~~-~~~~~pNGi 139 (246)
T PF08450_consen 74 VLADLPDG-----------GVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPDGK-VTVVA-DGLGFPNGI 139 (246)
T ss_dssp EEEEEETT-----------CSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETTSE-EEEEE-EEESSEEEE
T ss_pred EEeeccCC-----------CcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCCCe-EEEEe-cCcccccce
Confidence 65543110 12456899999996 57799999765 46999999954 33333 368899999
Q ss_pred EEeCCCCEEEEEeCCCCCCeEEEEecCCCc-----eEEEeeC--CCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCC
Q psy13635 225 TLSPAHGYLFWSDWNEKRPKIERSLLNGGE-----RVLLVKD--RLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNN 297 (357)
Q Consensus 225 avd~~~g~Ly~~d~~~~~~~I~~~~~dg~~-----~~~~~~~--~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~ 297 (357)
+++|.+..||+++... ++|++++++... .+.+... ....|.|+++| .+|+||+++...++|.+++++|..
T Consensus 140 ~~s~dg~~lyv~ds~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD-~~G~l~va~~~~~~I~~~~p~G~~ 216 (246)
T PF08450_consen 140 AFSPDGKTLYVADSFN--GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVD-SDGNLWVADWGGGRIVVFDPDGKL 216 (246)
T ss_dssp EEETTSSEEEEEETTT--TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEB-TTS-EEEEEETTTEEEEEETTSCE
T ss_pred EECCcchheeeccccc--ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEc-CCCCEEEEEcCCCEEEEECCCccE
Confidence 9999988999999995 599999997432 2334332 22369999999 689999999999999999999887
Q ss_pred eEEEecCCCCceEEEEEE---CCEEEEEeC
Q psy13635 298 RRELINENLPHVFGISLL---GDYVYWTDW 324 (357)
Q Consensus 298 ~~~i~~~~~~~p~gia~~---~~~ly~td~ 324 (357)
...+.. ...+|..+++. .+.||+|..
T Consensus 217 ~~~i~~-p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 217 LREIEL-PVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EEEEE--SSSSEEEEEEESTTSSEEEEEEB
T ss_pred EEEEcC-CCCCEEEEEEECCCCCEEEEEeC
Confidence 765554 36699999995 378999863
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1215|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-22 Score=206.78 Aligned_cols=257 Identities=39% Similarity=0.784 Sum_probs=209.7
Q ss_pred EeecCCCCeEEEEEeCCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEe
Q psy13635 34 ALSHHVAAQMLLFATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT 113 (357)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~ 113 (357)
|.+.....+++.++++++++++.++.. ....+.+....+.++++++.++.+||+|.....|.+...++.. ...+..
T Consensus 401 c~~~~~~~~~l~~s~~~~ir~~~~~~~-~~~~p~~~~~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~---~~~~~~ 476 (877)
T KOG1215|consen 401 CEASDQPEAFLLFSNRHDIRRISLDCS-DVSRPLEGIKNAVALDFDVLNNRIYWADLSDEKICRASQDGSS---ECELCG 476 (877)
T ss_pred ceecCCCCcEEEEecCccceecccCCC-cceEEccCCccceEEEEEecCCEEEEEeccCCeEeeeccCCCc---cceEec
Confidence 446666899999999999999999874 6677777778999999999999999999999999999999885 122344
Q ss_pred CCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEE
Q psy13635 114 NGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWT 193 (357)
Q Consensus 114 ~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~t 193 (357)
.+...| .|+|+||..+++||+
T Consensus 477 ~g~~~~-----------------------------------------------------------~~lavD~~~~~~y~t 497 (877)
T KOG1215|consen 477 DGLCIP-----------------------------------------------------------EGLAVDWIGDNIYWT 497 (877)
T ss_pred cCcccc-----------------------------------------------------------CcEEEEeccCCceec
Confidence 444444 445555555556666
Q ss_pred eCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEec
Q psy13635 194 DTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDV 273 (357)
Q Consensus 194 d~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~ 273 (357)
|.....|.+.+++|..+.+++...+..|+.++++|..|.+||+|++.. .+|.|+.+||..+..++..++.+|+|+++|.
T Consensus 498 De~~~~i~v~~~~g~~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~-~~i~ra~~dg~~~~~l~~~~~~~p~glt~d~ 576 (877)
T KOG1215|consen 498 DEGNCLIEVADLDGSSRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQP-PRIERASLDGSERAVLVTNGILWPNGLTIDY 576 (877)
T ss_pred ccCCceeEEEEccCCceeEEEecCCCCccceeeccccCeeEEecCCCC-chhhhhcCCCCCceEEEeCCccCCCcceEEe
Confidence 666666666667777777777777789999999999999999999964 5999999999999999998899999999999
Q ss_pred CCCEEEEEeCCCC-eEEEEeCCCCCeEEEecCCCCceEEEEEECCEEEEEeCCCCeEEEEeCccCceeEEEecccCCcee
Q psy13635 274 DNEKLYWCDAKTD-KIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVIIERSCTGVT 352 (357)
Q Consensus 274 ~~~~lY~~d~~~~-~I~~~~~dG~~~~~i~~~~~~~p~gia~~~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~ 352 (357)
..+++||+|.... .|.+++.+|..++........+|++++++++++||+++....+.+..+..+.....+..++..|++
T Consensus 577 ~~~~~yw~d~~~~~~i~~~~~~g~~r~~~~~~~~~~p~~~~~~~~~iyw~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (877)
T KOG1215|consen 577 ETDRLYWADAKLDYTIESANMDGQNRRVVDSEDLPHPFGLSVFEDYIYWTDWSNRAISRAEKHKGSDSRTSRSNLAQPLD 656 (877)
T ss_pred ecceeEEEcccCCcceeeeecCCCceEEeccccCCCceEEEEecceeEEeeccccceEeeecccCCcceeeecccCcccc
Confidence 9999999999998 799999999998755556899999999999999999999988888887666551244555566665
Q ss_pred ee
Q psy13635 353 RR 354 (357)
Q Consensus 353 i~ 354 (357)
+.
T Consensus 657 ~~ 658 (877)
T KOG1215|consen 657 II 658 (877)
T ss_pred eE
Confidence 43
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.2e-21 Score=170.63 Aligned_cols=211 Identities=24% Similarity=0.353 Sum_probs=164.2
Q ss_pred ceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCC
Q psy13635 119 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTD 198 (357)
Q Consensus 119 p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~ 198 (357)
|+|+++|+.++.|||+|..+++|+++++++...+.+. ...|.|++++..+++||+++...
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~-------------------~~~~~G~~~~~~~g~l~v~~~~~- 61 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID-------------------LPGPNGMAFDRPDGRLYVADSGG- 61 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE-------------------SSSEEEEEEECTTSEEEEEETTC-
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe-------------------cCCCceEEEEccCCEEEEEEcCc-
Confidence 7999999889999999999999999999988766542 12499999997779999999854
Q ss_pred eEEEEEcCCCceEEEecC-----CCCCceEEEEeCCCCEEEEEeCCCCC------CeEEEEecCCCceEEEeeCCCCCce
Q psy13635 199 RIEVCRLEGTHRKVLVNT-----DLVEPRAITLSPAHGYLFWSDWNEKR------PKIERSLLNGGERVLLVKDRLGWPN 267 (357)
Q Consensus 199 ~I~~~~~~g~~~~~~~~~-----~~~~P~giavd~~~g~Ly~~d~~~~~------~~I~~~~~dg~~~~~~~~~~l~~P~ 267 (357)
+.+.++.....+.+... .+..|+++++|+. |+||+++..... ++|++.+.++. ...+ ...+..|+
T Consensus 62 -~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~-G~ly~t~~~~~~~~~~~~g~v~~~~~~~~-~~~~-~~~~~~pN 137 (246)
T PF08450_consen 62 -IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPD-GNLYVTDSGGGGASGIDPGSVYRIDPDGK-VTVV-ADGLGFPN 137 (246)
T ss_dssp -EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TT-S-EEEEEECCBCTTCGGSEEEEEEETTSE-EEEE-EEEESSEE
T ss_pred -eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCC-CCEEEEecCCCccccccccceEEECCCCe-EEEE-ecCccccc
Confidence 44458776655555543 5678999999985 899999976431 57999999933 3333 35689999
Q ss_pred EEEEecCCCEEEEEeCCCCeEEEEeCCCCC-----eEEEec--CCCCceEEEEEE-CCEEEEEeCCCCeEEEEeCccCce
Q psy13635 268 GITLDVDNEKLYWCDAKTDKIEMIDFDGNN-----RRELIN--ENLPHVFGISLL-GDYVYWTDWQRRSIDRVNKITGND 339 (357)
Q Consensus 268 giaid~~~~~lY~~d~~~~~I~~~~~dG~~-----~~~i~~--~~~~~p~gia~~-~~~ly~td~~~~~I~~~~~~~g~~ 339 (357)
||++++.+..||++|+..++|++++++... ++.+.. .....|.|++++ +|+||++++.+++|+++++ +|+.
T Consensus 138 Gi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p-~G~~ 216 (246)
T PF08450_consen 138 GIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDP-DGKL 216 (246)
T ss_dssp EEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEET-TSCE
T ss_pred ceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECC-CccE
Confidence 999999888999999999999999986432 233322 122369999999 6999999999999999999 5999
Q ss_pred eEEEecccCCceeee
Q psy13635 340 REVIIERSCTGVTRR 354 (357)
Q Consensus 340 ~~~i~~~l~~p~~i~ 354 (357)
...|..+...|..+.
T Consensus 217 ~~~i~~p~~~~t~~~ 231 (246)
T PF08450_consen 217 LREIELPVPRPTNCA 231 (246)
T ss_dssp EEEEE-SSSSEEEEE
T ss_pred EEEEcCCCCCEEEEE
Confidence 988888777777654
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.7e-15 Score=138.14 Aligned_cols=297 Identities=17% Similarity=0.176 Sum_probs=199.1
Q ss_pred CcEEEEEcCC-CCcceEe--ccCCCcEEEEEEEccCCEEEEEeCC---CCeEEEEEcCCC-CcceeEEEEeCCcCCceeE
Q psy13635 50 KDIRIANLSR-PLKPVTI--IKDLEEGAAIDYYYKKSMVCWTDHG---TEMISCCTFDGN-NVGSKHNVITNGLITPDGL 122 (357)
Q Consensus 50 ~~i~~~~~~~-~~~~~~~--~~~~~~~~~i~~d~~~~~ly~~d~~---~~~I~~~~~~g~-~~~~~~~~~~~~~~~p~gl 122 (357)
..|..+.++. +.+.+.+ .....+|.-+++++.++.||.++.. .+.|..+.++.. ............-..|..+
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i 92 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI 92 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence 3566555522 1233322 3467789999999999999999884 677777666643 1111122223245689999
Q ss_pred EEEcCCCeEEEEeCCCCEEEEEEcCC--CceEEE--Ee-cCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCC
Q psy13635 123 AIDWLTEKLYWTDSETNKLEVSSLDG--KKRKVL--YW-EDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGT 197 (357)
Q Consensus 123 avd~~~~~ly~td~~~~~I~~~~~~g--~~~~~~--~~-~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~ 197 (357)
++|+.++.||+++...+.|.+++++. ...... .. .+. .|.. ..+...+|..+.++|.++.+|++|.+.
T Consensus 93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~-g~~~------~rq~~~h~H~v~~~pdg~~v~v~dlG~ 165 (345)
T PF10282_consen 93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGS-GPNP------DRQEGPHPHQVVFSPDGRFVYVPDLGA 165 (345)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEE-ESST------TTTSSTCEEEEEE-TTSSEEEEEETTT
T ss_pred EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCC-CCcc------cccccccceeEEECCCCCEEEEEecCC
Confidence 99999999999999999999888764 333321 11 010 0000 012335889999999999999999999
Q ss_pred CeEEEEEcCCCc--e---EEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecC--CCceEEE--ee---C---C
Q psy13635 198 DRIEVCRLEGTH--R---KVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLN--GGERVLL--VK---D---R 262 (357)
Q Consensus 198 ~~I~~~~~~g~~--~---~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~d--g~~~~~~--~~---~---~ 262 (357)
++|.+++.+... . ..+.......|+.++++|...++|+++... ..|..++.+ ....+.+ +. . +
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s--~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~ 243 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELS--NTVSVFDYDPSDGSLTEIQTISTLPEGFTG 243 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTT--TEEEEEEEETTTTEEEEEEEEESCETTSCS
T ss_pred CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCC--CcEEEEeecccCCceeEEEEeeeccccccc
Confidence 999999987544 2 122223457899999999988999999885 488888887 2222221 11 1 1
Q ss_pred CCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCC--CeEEE--ecCCCCceEEEEEE--CCEEEEEeCCCCeEEEE--eC
Q psy13635 263 LGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGN--NRREL--INENLPHVFGISLL--GDYVYWTDWQRRSIDRV--NK 334 (357)
Q Consensus 263 l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~--~~~~i--~~~~~~~p~gia~~--~~~ly~td~~~~~I~~~--~~ 334 (357)
...|.+|++++++..||+++.+.+.|..++++.. ..+.+ +.....+|.+++++ +.+||+++..++.|..+ +.
T Consensus 244 ~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 244 ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred cCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 2379999999999999999999999999998543 22222 22246679999995 68999999999998765 55
Q ss_pred ccCceeEEE-ecccCCceeeee
Q psy13635 335 ITGNDREVI-IERSCTGVTRRR 355 (357)
Q Consensus 335 ~~g~~~~~i-~~~l~~p~~i~~ 355 (357)
.+|+....- ...+..|+-|.+
T Consensus 324 ~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 324 DTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTEEEEEEEEEESSSEEEEEE
T ss_pred CCCcEEEecccccCCCCEEEeC
Confidence 566655544 246778876653
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-14 Score=133.55 Aligned_cols=293 Identities=15% Similarity=0.124 Sum_probs=190.4
Q ss_pred EEEEe--CCcEEEEEcCCCCcce--EeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCc
Q psy13635 44 LLFAT--SKDIRIANLSRPLKPV--TIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITP 119 (357)
Q Consensus 44 l~~~~--~~~i~~~~~~~~~~~~--~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p 119 (357)
+|+++ .+.|..++++...+.+ ...+....|..++++++...||++....+.|..+++++.......... .....|
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p 82 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSP 82 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCc
Confidence 44443 4568878875322222 223344678899999988999999887888877776532210111111 122479
Q ss_pred eeEEEEcCCCeEEEEeCCCCEEEEEEcC--CCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCC
Q psy13635 120 DGLAIDWLTEKLYWTDSETNKLEVSSLD--GKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGT 197 (357)
Q Consensus 120 ~glavd~~~~~ly~td~~~~~I~~~~~~--g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~ 197 (357)
.++++++.++.||.++...+.|..++++ |...+.+.. ......|.++++++.++.+|+++.+.
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~---------------~~~~~~~~~~~~~p~g~~l~v~~~~~ 147 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQI---------------IEGLEGCHSANIDPDNRTLWVPCLKE 147 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceee---------------ccCCCcccEeEeCCCCCEEEEeeCCC
Confidence 9999999999999999888999888775 322221110 01123689999999999999999999
Q ss_pred CeEEEEEcCCCc-eE-----EEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCC--CceEEEee-----C---
Q psy13635 198 DRIEVCRLEGTH-RK-----VLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNG--GERVLLVK-----D--- 261 (357)
Q Consensus 198 ~~I~~~~~~g~~-~~-----~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg--~~~~~~~~-----~--- 261 (357)
++|.+.+++... .. .........|++++++|...++|+++... +.|...+++. ...+.+.. .
T Consensus 148 ~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~--~~v~v~~~~~~~~~~~~~~~~~~~p~~~~ 225 (330)
T PRK11028 148 DRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELN--SSVDVWQLKDPHGEIECVQTLDMMPADFS 225 (330)
T ss_pred CEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCC--CEEEEEEEeCCCCCEEEEEEEecCCCcCC
Confidence 999999886421 11 11111236799999999988999999874 4888777762 22222111 1
Q ss_pred CCCCceEEEEecCCCEEEEEeCCCCeEEEEeCC--CCCeEEEec-CCCCceEEEEEE--CCEEEEEeCCCCeEEEE--eC
Q psy13635 262 RLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFD--GNNRRELIN-ENLPHVFGISLL--GDYVYWTDWQRRSIDRV--NK 334 (357)
Q Consensus 262 ~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~d--G~~~~~i~~-~~~~~p~gia~~--~~~ly~td~~~~~I~~~--~~ 334 (357)
...+|.++++++.+.+||+++...+.|..++.+ +...+.+.. .....|.++++. +.+||+++...+.|..+ +.
T Consensus 226 ~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 226 DTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 123456799998888999999888889888764 332221111 113477888875 67999999888877665 44
Q ss_pred ccCce--eEEEecccCCceeeee
Q psy13635 335 ITGND--REVIIERSCTGVTRRR 355 (357)
Q Consensus 335 ~~g~~--~~~i~~~l~~p~~i~~ 355 (357)
.+|.. ...+.. ...|+.+..
T Consensus 306 ~~g~l~~~~~~~~-g~~P~~~~~ 327 (330)
T PRK11028 306 ETGLLTELGRYAV-GQGPMWVSV 327 (330)
T ss_pred CCCcEEEcccccc-CCCceEEEE
Confidence 44542 222333 567877753
|
|
| >KOG4659|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.2e-16 Score=153.80 Aligned_cols=244 Identities=17% Similarity=0.236 Sum_probs=173.5
Q ss_pred CCeEEEEEeCCcEEEEEcCCCCcceE--eccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEc-CCCCcceeEEEEe-C-
Q psy13635 40 AAQMLLFATSKDIRIANLSRPLKPVT--IIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTF-DGNNVGSKHNVIT-N- 114 (357)
Q Consensus 40 ~~~~l~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~-~g~~~~~~~~~~~-~- 114 (357)
+...|++.+.+-|+||-.+|.....+ -..+..+-.-|+++|.++.||++|..+.+|+|+.- ++.......+++. .
T Consensus 374 ~DGSl~VGDfNyIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~G 453 (1899)
T KOG4659|consen 374 PDGSLIVGDFNYIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDG 453 (1899)
T ss_pred CCCcEEEccchheeeecCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccC
Confidence 34458899999999999988432222 22466677889999999999999999999999753 3322211222221 1
Q ss_pred -------------------CcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeee---eccCc
Q psy13635 115 -------------------GLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIAS---YKLPT 172 (357)
Q Consensus 115 -------------------~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~---~~~~~ 172 (357)
.+..|.|||+| ..+.||++|. ..|.+++.+|-....+...+.. -+.+.+ |++..
T Consensus 454 e~Clp~desCGDGalA~dA~L~~PkGIa~d-k~g~lYfaD~--t~IR~iD~~giIstlig~~~~~-~~p~~C~~~~kl~~ 529 (1899)
T KOG4659|consen 454 EVCLPADESCGDGALAQDAQLIFPKGIAFD-KMGNLYFADG--TRIRVIDTTGIISTLIGTTPDQ-HPPRTCAQITKLVD 529 (1899)
T ss_pred cCccccccccCcchhcccceeccCCceeEc-cCCcEEEecc--cEEEEeccCceEEEeccCCCCc-cCccccccccchhh
Confidence 26789999999 6899999995 4899999999877776655443 233333 45556
Q ss_pred ccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEec-------------------CCCCCceEEEEeCCCCEE
Q psy13635 173 IEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVN-------------------TDLVEPRAITLSPAHGYL 233 (357)
Q Consensus 173 ~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~-------------------~~~~~P~giavd~~~g~L 233 (357)
-++.||..|||||.++.||+-|. +.|.+++.++..+..+.. ..+..|.+||+.+. |.|
T Consensus 530 ~~leWPT~LaV~Pmdnsl~Vld~--nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~-G~l 606 (1899)
T KOG4659|consen 530 LQLEWPTSLAVDPMDNSLLVLDT--NVVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTD-GAL 606 (1899)
T ss_pred eeeecccceeecCCCCeEEEeec--ceEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCC-ceE
Confidence 68899999999999999999997 567787777665422111 12457899999974 999
Q ss_pred EEEeCCCC-CCeEEEEecCCCceEEEe-------------------------eCCCCCceEEEEecCCCEEEEEeCCCCe
Q psy13635 234 FWSDWNEK-RPKIERSLLNGGERVLLV-------------------------KDRLGWPNGITLDVDNEKLYWCDAKTDK 287 (357)
Q Consensus 234 y~~d~~~~-~~~I~~~~~dg~~~~~~~-------------------------~~~l~~P~giaid~~~~~lY~~d~~~~~ 287 (357)
|++++.+. -.+|.++..||+- ..+. ...++.|.++|+. .+|.+|++|.++-+
T Consensus 607 yvaEsD~rriNrvr~~~tdg~i-~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVs-Pdg~v~IAD~gN~r 684 (1899)
T KOG4659|consen 607 YVAESDGRRINRVRKLSTDGTI-SILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVS-PDGDVIIADSGNSR 684 (1899)
T ss_pred EEEeccchhhhheEEeccCceE-EEecCCCCCCCcccccCCccccccchhhhccccCCcceEEEC-CCCcEEEecCCchh
Confidence 99998854 2244444455521 1111 1136789999998 68899999999998
Q ss_pred EEEEe
Q psy13635 288 IEMID 292 (357)
Q Consensus 288 I~~~~ 292 (357)
|..+.
T Consensus 685 Ir~Vs 689 (1899)
T KOG4659|consen 685 IRKVS 689 (1899)
T ss_pred hhhhh
Confidence 87764
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.5e-15 Score=134.28 Aligned_cols=235 Identities=18% Similarity=0.222 Sum_probs=168.4
Q ss_pred CCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCC
Q psy13635 69 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG 148 (357)
Q Consensus 69 ~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g 148 (357)
......+..+++.++.|||+|+..+.|.+.+..... ..+....-..+.+..+| ..+.|..++.+...+.. -.|
T Consensus 23 ~~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~----~~~~~~p~~~~~~~~~d-~~g~Lv~~~~g~~~~~~--~~~ 95 (307)
T COG3386 23 GATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGK----KRVFPSPGGFSSGALID-AGGRLIACEHGVRLLDP--DTG 95 (307)
T ss_pred ccccccCccCcCCCCEEEEEeCCCCeEEEecCCcCc----eEEEECCCCcccceeec-CCCeEEEEccccEEEec--cCC
Confidence 333455667889999999999999999999997443 44444444458888898 57888888765433333 223
Q ss_pred CceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC-----C------CeEEEEEcCCCceEEEecCC
Q psy13635 149 KKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG-----T------DRIEVCRLEGTHRKVLVNTD 217 (357)
Q Consensus 149 ~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~-----~------~~I~~~~~~g~~~~~~~~~~ 217 (357)
...+.+.... .....+.|++..+|+ .|++|+++.. . +++++++++|...+.+. ..
T Consensus 96 ~~~t~~~~~~------------~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~-~~ 161 (307)
T COG3386 96 GKITLLAEPE------------DGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLD-DD 161 (307)
T ss_pred ceeEEecccc------------CCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeec-Cc
Confidence 3323332221 133457899999995 5899999988 2 37999998776655443 45
Q ss_pred CCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecC---CC--ceE--EEeeCCCCCceEEEEecCCCEEE-EEeCCCCeEE
Q psy13635 218 LVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLN---GG--ERV--LLVKDRLGWPNGITLDVDNEKLY-WCDAKTDKIE 289 (357)
Q Consensus 218 ~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~d---g~--~~~--~~~~~~l~~P~giaid~~~~~lY-~~d~~~~~I~ 289 (357)
+..|+||+++|.+..||++|+.. .+|+++.++ |. ++. ......-..|.|+++| .+|+|| .+..+.++|.
T Consensus 162 ~~~~NGla~SpDg~tly~aDT~~--~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD-adG~lw~~a~~~g~~v~ 238 (307)
T COG3386 162 LTIPNGLAFSPDGKTLYVADTPA--NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVD-ADGNLWVAAVWGGGRVV 238 (307)
T ss_pred EEecCceEECCCCCEEEEEeCCC--CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEe-CCCCEEEecccCCceEE
Confidence 88999999999988999999985 599999987 21 112 2222334789999999 789998 4444445999
Q ss_pred EEeCCCCCeEEEecCCCCceEEEEEEC---CEEEEEeCCCCe
Q psy13635 290 MIDFDGNNRRELINENLPHVFGISLLG---DYVYWTDWQRRS 328 (357)
Q Consensus 290 ~~~~dG~~~~~i~~~~~~~p~gia~~~---~~ly~td~~~~~ 328 (357)
+++++|.....+.. ....|..+++-+ +.||+|....+.
T Consensus 239 ~~~pdG~l~~~i~l-P~~~~t~~~FgG~~~~~L~iTs~~~~~ 279 (307)
T COG3386 239 RFNPDGKLLGEIKL-PVKRPTNPAFGGPDLNTLYITSARSGM 279 (307)
T ss_pred EECCCCcEEEEEEC-CCCCCccceEeCCCcCEEEEEecCCCC
Confidence 99999877765543 336788888875 899999877633
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.7e-13 Score=125.19 Aligned_cols=269 Identities=16% Similarity=0.173 Sum_probs=197.9
Q ss_pred EEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeE
Q psy13635 52 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKL 131 (357)
Q Consensus 52 i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~l 131 (357)
+..++..+ ......+.....|.++.+.+....+|+++...+.+..++.. .. ........+...|.++++++.+.++
T Consensus 13 ~~v~~~~~-~~~~~~~~~~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n--~~~~~~~~g~~~p~~i~v~~~~~~v 88 (381)
T COG3391 13 VSVINTGT-NKVTAAISLGRGPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SN--TVTQSLSVGGVYPAGVAVNPAGNKV 88 (381)
T ss_pred eEEEeecc-cEEEEEeecCCCCceeEEcCccCEEEEEeecCceeeecccc-cc--eeeeeccCCCccccceeeCCCCCeE
Confidence 44444433 34444445555899999999888999999887766666655 32 1122233444789999999999999
Q ss_pred EEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC--CCeEEEEEcCCCc
Q psy13635 132 YWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG--TDRIEVCRLEGTH 209 (357)
Q Consensus 132 y~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~--~~~I~~~~~~g~~ 209 (357)
|+++...+.|.+++............+ ..|.++++|+.++.+|+++.+ .++|.+++.....
T Consensus 89 yv~~~~~~~v~vid~~~~~~~~~~~vG-----------------~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 89 YVTTGDSNTVSVIDTATNTVLGSIPVG-----------------LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred EEecCCCCeEEEEcCcccceeeEeeec-----------------cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence 999999999999995544332222111 279999999999999999994 6899999988665
Q ss_pred eEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEE-E---eeCCCCCceEEEEecCCCEEEEEeCCC
Q psy13635 210 RKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVL-L---VKDRLGWPNGITLDVDNEKLYWCDAKT 285 (357)
Q Consensus 210 ~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~-~---~~~~l~~P~giaid~~~~~lY~~d~~~ 285 (357)
....... ...|.+++++|...++|+++... +.|..++..+..... - .-.....|.++++++.+.++|+++..+
T Consensus 152 ~~~~~~v-G~~P~~~a~~p~g~~vyv~~~~~--~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 152 VTATIPV-GNTPTGVAVDPDGNKVYVTNSDD--NTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred EEEEEec-CCCcceEEECCCCCeEEEEecCC--CeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccC
Confidence 5444432 24789999999988899999764 599999977765553 0 113457899999999999999999888
Q ss_pred --CeEEEEeCCCCCeEEE--ecCCCCceEEEEEE--CCEEEEEeCCCCeEEEEeCccCceeEEEec
Q psy13635 286 --DKIEMIDFDGNNRREL--INENLPHVFGISLL--GDYVYWTDWQRRSIDRVNKITGNDREVIIE 345 (357)
Q Consensus 286 --~~I~~~~~dG~~~~~i--~~~~~~~p~gia~~--~~~ly~td~~~~~I~~~~~~~g~~~~~i~~ 345 (357)
+.+.+++......... ..+.+ .|.++++. +..+|+++...+.+..++..+.+....+..
T Consensus 229 ~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~ 293 (381)
T COG3391 229 GSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT 293 (381)
T ss_pred CCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence 6899998877665443 23345 78888886 688999998889999999866666555443
|
|
| >KOG4659|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-14 Score=145.75 Aligned_cols=245 Identities=21% Similarity=0.279 Sum_probs=176.4
Q ss_pred CCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCC---cCCceeEEEEcCCCeEEEEeCCCCEEEEEE
Q psy13635 69 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNG---LITPDGLAIDWLTEKLYWTDSETNKLEVSS 145 (357)
Q Consensus 69 ~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~---~~~p~glavd~~~~~ly~td~~~~~I~~~~ 145 (357)
.+-.|.++++.+ +|.||+.|. +-|+|+..+|.. .+++.=+ ...-.-||+||.++.||++|....+|+|+.
T Consensus 363 ~L~aPvala~a~-DGSl~VGDf--NyIRRI~~dg~v----~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~ 435 (1899)
T KOG4659|consen 363 SLFAPVALAYAP-DGSLIVGDF--NYIRRISQDGQV----STILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVS 435 (1899)
T ss_pred eeeceeeEEEcC-CCcEEEccc--hheeeecCCCce----EEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEec
Confidence 344799999987 789999987 479999999985 5555434 344567999999999999999999999985
Q ss_pred -cCCC----ceEEEEecC-C-------CCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEE
Q psy13635 146 -LDGK----KRKVLYWED-I-------DQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKV 212 (357)
Q Consensus 146 -~~g~----~~~~~~~~~-~-------~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~ 212 (357)
+.++ +-+++...+ . +.-.+.|. ..++..|.||||| ..|.||++|.. +|.++|.+|-....
T Consensus 436 sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~----dA~L~~PkGIa~d-k~g~lYfaD~t--~IR~iD~~giIstl 508 (1899)
T KOG4659|consen 436 SLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQ----DAQLIFPKGIAFD-KMGNLYFADGT--RIRVIDTTGIISTL 508 (1899)
T ss_pred cCCccccccCeeEEeccCcCccccccccCcchhcc----cceeccCCceeEc-cCCcEEEeccc--EEEEeccCceEEEe
Confidence 3322 123333222 2 22233333 5677899999999 89999999985 79999888754433
Q ss_pred Eec------------------CCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEee--------------
Q psy13635 213 LVN------------------TDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVK-------------- 260 (357)
Q Consensus 213 ~~~------------------~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~-------------- 260 (357)
+.. -.++.|..+|++|.++.||+-|.. .|.++..++..+...-.
T Consensus 509 ig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~n----vvlrit~~~rV~Ii~GrP~hC~~a~~t~~~s 584 (1899)
T KOG4659|consen 509 IGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTN----VVLRITVVHRVRIILGRPTHCDLANATSSAS 584 (1899)
T ss_pred ccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeecc----eEEEEccCccEEEEcCCccccccCCCchhhh
Confidence 322 136799999999999999999965 88888887765421110
Q ss_pred -----CCCCCceEEEEecCCCEEEEEeCCCCeE---EEEeCCCCCeEEEec--------------------------CCC
Q psy13635 261 -----DRLGWPNGITLDVDNEKLYWCDAKTDKI---EMIDFDGNNRRELIN--------------------------ENL 306 (357)
Q Consensus 261 -----~~l~~P~giaid~~~~~lY~~d~~~~~I---~~~~~dG~~~~~i~~--------------------------~~~ 306 (357)
..+.-|..|++. ..|.||++++...+| +.+..||. ..++. ..+
T Consensus 585 kla~H~tl~~~r~Iavg-~~G~lyvaEsD~rriNrvr~~~tdg~--i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~l 661 (1899)
T KOG4659|consen 585 KLADHRTLLIQRDIAVG-TDGALYVAESDGRRINRVRKLSTDGT--ISILAGAKSPCSCDVAACCDCFSLRDVAATQAKL 661 (1899)
T ss_pred hhhhhhhhhhhhceeec-CCceEEEEeccchhhhheEEeccCce--EEEecCCCCCCCcccccCCccccccchhhhcccc
Confidence 123347899998 689999999877554 44444552 11111 136
Q ss_pred CceEEEEEE-CCEEEEEeCCCCeEEEEeC
Q psy13635 307 PHVFGISLL-GDYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 307 ~~p~gia~~-~~~ly~td~~~~~I~~~~~ 334 (357)
..|.++|+. +|.+|++|.++-+|..+.+
T Consensus 662 nsp~alaVsPdg~v~IAD~gN~rIr~Vs~ 690 (1899)
T KOG4659|consen 662 NSPYALAVSPDGDVIIADSGNSRIRKVSA 690 (1899)
T ss_pred CCcceEEECCCCcEEEecCCchhhhhhhh
Confidence 789999998 6999999999988877654
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=9e-14 Score=126.34 Aligned_cols=217 Identities=21% Similarity=0.294 Sum_probs=156.1
Q ss_pred EEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCC
Q psy13635 109 HNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVAR 188 (357)
Q Consensus 109 ~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~ 188 (357)
..++..+..-.+|...++..+.|||+|...++|.+.++.....+++.... ..+.+..+| ..+
T Consensus 17 ~~~~~~~~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~-----------------~~~~~~~~d-~~g 78 (307)
T COG3386 17 VTLLDKGATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPG-----------------GFSSGALID-AGG 78 (307)
T ss_pred eeEeecccccccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCC-----------------Ccccceeec-CCC
Confidence 45566667778999999999999999999999999999754444443221 237788888 677
Q ss_pred eEEEEeCCCCeEEEEEcCCCceEEEecC----CCCCceEEEEeCCCCEEEEEeCC-----C----CCCeEEEEecCCCce
Q psy13635 189 NLYWTDTGTDRIEVCRLEGTHRKVLVNT----DLVEPRAITLSPAHGYLFWSDWN-----E----KRPKIERSLLNGGER 255 (357)
Q Consensus 189 ~lY~td~~~~~I~~~~~~g~~~~~~~~~----~~~~P~giavd~~~g~Ly~~d~~-----~----~~~~I~~~~~dg~~~ 255 (357)
+|..++.+...+.. ..|...+.+... ....|+...++|. |.+|+++.. . ..+.++|++.+|...
T Consensus 79 ~Lv~~~~g~~~~~~--~~~~~~t~~~~~~~~~~~~r~ND~~v~pd-G~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~ 155 (307)
T COG3386 79 RLIACEHGVRLLDP--DTGGKITLLAEPEDGLPLNRPNDGVVDPD-GRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVV 155 (307)
T ss_pred eEEEEccccEEEec--cCCceeEEeccccCCCCcCCCCceeEcCC-CCEEEeCCCccccCccccCCcceEEEEcCCCCEE
Confidence 88888776433332 223332333221 3578999999986 999999988 2 156899999865544
Q ss_pred EEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCC---CC--CeE-EEec-CCCCceEEEEEE-CCEEE-EEeCCC
Q psy13635 256 VLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFD---GN--NRR-ELIN-ENLPHVFGISLL-GDYVY-WTDWQR 326 (357)
Q Consensus 256 ~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~d---G~--~~~-~i~~-~~~~~p~gia~~-~~~ly-~td~~~ 326 (357)
.++...+..||||++++++..+|++|+..++|++++.+ |. ++. .+.. ..-..|.|+++| +|.+| .+.+..
T Consensus 156 -~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g 234 (307)
T COG3386 156 -RLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGG 234 (307)
T ss_pred -EeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCC
Confidence 44445589999999999999999999999999999887 32 221 1222 234689999999 57777 455555
Q ss_pred CeEEEEeCccCceeEEEecccC
Q psy13635 327 RSIDRVNKITGNDREVIIERSC 348 (357)
Q Consensus 327 ~~I~~~~~~~g~~~~~i~~~l~ 348 (357)
+.|.++++ +|+....+.-...
T Consensus 235 ~~v~~~~p-dG~l~~~i~lP~~ 255 (307)
T COG3386 235 GRVVRFNP-DGKLLGEIKLPVK 255 (307)
T ss_pred ceEEEECC-CCcEEEEEECCCC
Confidence 69999999 5888887765533
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.4e-12 Score=119.43 Aligned_cols=265 Identities=13% Similarity=0.132 Sum_probs=176.6
Q ss_pred EeecCCCCeEEEEEeCC-----cEEEEEcCCC-CcceEe---ccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCC
Q psy13635 34 ALSHHVAAQMLLFATSK-----DIRIANLSRP-LKPVTI---IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNN 104 (357)
Q Consensus 34 ~~~~~~~~~~l~~~~~~-----~i~~~~~~~~-~~~~~~---~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~ 104 (357)
.++.++...+||.++.. .|..+.++.. ...+.+ ......|..+++++.+..||+++..++.+..+.++...
T Consensus 41 ~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g 120 (345)
T PF10282_consen 41 WLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDG 120 (345)
T ss_dssp CEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS
T ss_pred eEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCc
Confidence 34556677788888763 4655555442 233332 22566899999999999999999999998887776542
Q ss_pred c-ceeEEEEe----------CCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCc--eEEEEecCCCCcceeeeeccC
Q psy13635 105 V-GSKHNVIT----------NGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKK--RKVLYWEDIDQPRAIASYKLP 171 (357)
Q Consensus 105 ~-~~~~~~~~----------~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~--~~~~~~~~~~~p~~i~~~~~~ 171 (357)
. .....+.. ..-..|..+.+++.++.+|++|.+..+|.+++.+... ........
T Consensus 121 ~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~------------- 187 (345)
T PF10282_consen 121 SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIK------------- 187 (345)
T ss_dssp EEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEE-------------
T ss_pred ccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccc-------------
Confidence 1 11111221 1235688999999999999999999999999987654 22211111
Q ss_pred cccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcC--CCceEEE--ec---C---CCCCceEEEEeCCCCEEEEEeCCCC
Q psy13635 172 TIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLE--GTHRKVL--VN---T---DLVEPRAITLSPAHGYLFWSDWNEK 241 (357)
Q Consensus 172 ~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~--g~~~~~~--~~---~---~~~~P~giavd~~~g~Ly~~d~~~~ 241 (357)
......|..+++++.++.+|+++...+.|.+++.+ ....+.+ +. . ....|.+|+++|...+||+++.+.+
T Consensus 188 ~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~ 267 (345)
T PF10282_consen 188 VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSN 267 (345)
T ss_dssp CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTT
T ss_pred cccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCC
Confidence 12224799999999999999999999999988877 2222111 11 1 1237999999999889999999954
Q ss_pred CCeEEEEecCCC--ceEE--EeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCC--CCeEEEec-CCCCceEEEE
Q psy13635 242 RPKIERSLLNGG--ERVL--LVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDG--NNRRELIN-ENLPHVFGIS 313 (357)
Q Consensus 242 ~~~I~~~~~dg~--~~~~--~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG--~~~~~i~~-~~~~~p~gia 313 (357)
.|..++++.. ..+. .+..+...|.++++++.+..||+++...+.|..++.|. .....+.. -.+..|.-|.
T Consensus 268 --sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~ 344 (345)
T PF10282_consen 268 --SISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIV 344 (345)
T ss_dssp --EEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEE
T ss_pred --EEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEe
Confidence 8888888543 2222 23334567999999999999999999999998887653 22322221 2355666543
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.8e-11 Score=110.10 Aligned_cols=279 Identities=11% Similarity=0.045 Sum_probs=187.0
Q ss_pred CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCC
Q psy13635 49 SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 128 (357)
Q Consensus 49 ~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~ 128 (357)
.+.+.++|+.+.. ..........+.++++++.++.+|.+....+.|+.++..+.. ....+.. -..|..+++++.+
T Consensus 10 d~~v~~~d~~t~~-~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~---~~~~~~~-~~~~~~~~~~~~g 84 (300)
T TIGR03866 10 DNTISVIDTATLE-VTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGE---VIGTLPS-GPDPELFALHPNG 84 (300)
T ss_pred CCEEEEEECCCCc-eEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCc---EEEeccC-CCCccEEEECCCC
Confidence 4567788876533 333334444578899999888899988888899999987653 1222222 2457889999888
Q ss_pred CeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCC
Q psy13635 129 EKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGT 208 (357)
Q Consensus 129 ~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~ 208 (357)
+.+|.+....+.|..+++...........+ ..|.++++++.+..++++......+...+....
T Consensus 85 ~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-----------------~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~ 147 (300)
T TIGR03866 85 KILYIANEDDNLVTVIDIETRKVLAEIPVG-----------------VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTY 147 (300)
T ss_pred CEEEEEcCCCCeEEEEECCCCeEEeEeeCC-----------------CCcceEEECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 889998877789999998764322111111 247889999777666666655445666666544
Q ss_pred ceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEee-------CCCCCceEEEEecCCCEEEEE
Q psy13635 209 HRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVK-------DRLGWPNGITLDVDNEKLYWC 281 (357)
Q Consensus 209 ~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~-------~~l~~P~giaid~~~~~lY~~ 281 (357)
....... ....|..+++++.+..||++.... +.|...++........+. .....|.++++++.+..+|++
T Consensus 148 ~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~--~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~ 224 (300)
T TIGR03866 148 EIVDNVL-VDQRPRFAEFTADGKELWVSSEIG--GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVA 224 (300)
T ss_pred eEEEEEE-cCCCccEEEECCCCCEEEEEcCCC--CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEE
Confidence 3322111 224688999998877777765442 578888887543322111 112357789999888888998
Q ss_pred eCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEE--CCEEEEEeCCCCeEEEEeCccCceeEEEecccCCceeee
Q psy13635 282 DAKTDKIEMIDFDGNNRRELINENLPHVFGISLL--GDYVYWTDWQRRSIDRVNKITGNDREVIIERSCTGVTRR 354 (357)
Q Consensus 282 d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~--~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~i~ 354 (357)
....+++..++........... ....+.++++. +..||.+....+.|..++..+++.++.+..+ ..|.+|.
T Consensus 225 ~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~ 297 (300)
T TIGR03866 225 LGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVV 297 (300)
T ss_pred cCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeE
Confidence 8777889999886544332222 23357778874 5788888877889999999888888888665 7888875
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.4e-13 Score=126.35 Aligned_cols=239 Identities=18% Similarity=0.198 Sum_probs=159.5
Q ss_pred CCCcEEEEEEEccCCEEEEEeCC------------CCeEEEEEc-CCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEe
Q psy13635 69 DLEEGAAIDYYYKKSMVCWTDHG------------TEMISCCTF-DGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTD 135 (357)
Q Consensus 69 ~~~~~~~i~~d~~~~~ly~~d~~------------~~~I~~~~~-~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td 135 (357)
.+.+|.+|++|+ +++||+++.. .++|.++.- ++.......+++.+++..|.||++.. ++ ||+++
T Consensus 12 ~~~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV~~ 88 (367)
T TIGR02604 12 LLRNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYVAT 88 (367)
T ss_pred ccCCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEEeC
Confidence 488999999997 6889999842 237888764 33322244678889999999999984 55 99987
Q ss_pred CCCCEEEEE-EcCCC-----ceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCC------------
Q psy13635 136 SETNKLEVS-SLDGK-----KRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGT------------ 197 (357)
Q Consensus 136 ~~~~~I~~~-~~~g~-----~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~------------ 197 (357)
. .+|.++ +.+|. ..++++ .++.... ....+.++++++++ +|+||+++...
T Consensus 89 ~--~~i~~~~d~~gdg~ad~~~~~l~-~~~~~~~--------~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~ 156 (367)
T TIGR02604 89 P--PDILFLRDKDGDDKADGEREVLL-SGFGGQI--------NNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSD 156 (367)
T ss_pred C--CeEEEEeCCCCCCCCCCccEEEE-EccCCCC--------CcccccccCceECC-CCCEEEecccCCCceeccCCCcc
Confidence 4 468877 44442 233333 2221100 00134689999996 67999987731
Q ss_pred -------CeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecC------------CC-----
Q psy13635 198 -------DRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLN------------GG----- 253 (357)
Q Consensus 198 -------~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~d------------g~----- 253 (357)
+.|++++++|+..+++. .++..|.|+++|+ .|.||++|.... ...+++.- +.
T Consensus 157 ~~~~~~~g~i~r~~pdg~~~e~~a-~G~rnp~Gl~~d~-~G~l~~tdn~~~--~~~~i~~~~~g~~~g~~~~~~~~~~~~ 232 (367)
T TIGR02604 157 ESRQGLGGGLFRYNPDGGKLRVVA-HGFQNPYGHSVDS-WGDVFFCDNDDP--PLCRVTPVAEGGRNGYQSFNGRRYDHA 232 (367)
T ss_pred CcccccCceEEEEecCCCeEEEEe-cCcCCCccceECC-CCCEEEEccCCC--ceeEEcccccccccCCCCCCCcccccc
Confidence 47999999998877665 5789999999998 599999998643 33333311 00
Q ss_pred ---ceEEE-----------------eeCCCCCceEEEEe-------cCCCEEEEEeCCCCeEEEEeCC--CCCe----EE
Q psy13635 254 ---ERVLL-----------------VKDRLGWPNGITLD-------VDNEKLYWCDAKTDKIEMIDFD--GNNR----RE 300 (357)
Q Consensus 254 ---~~~~~-----------------~~~~l~~P~giaid-------~~~~~lY~~d~~~~~I~~~~~d--G~~~----~~ 300 (357)
..... .......|.|+++- ...+.+++++...++|.++.++ |... ..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~~g~~fv~~~~~~~v~~~~l~~~g~~~~~~~~~ 312 (367)
T TIGR02604 233 DRGADHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEYRGLLLVGDAHGQLIVRYSLEPKGAGFKGERPE 312 (367)
T ss_pred cccccccccccccccccccccccccccCCCccccEEEEeCCCcCCHHHCCCEEeeeccCCEEEEEEeecCCCccEeecCc
Confidence 00000 00112368899986 3458899999999999999875 4322 12
Q ss_pred EecC--CCCceEEEEEE-CCEEEEEeCCC
Q psy13635 301 LINE--NLPHVFGISLL-GDYVYWTDWQR 326 (357)
Q Consensus 301 i~~~--~~~~p~gia~~-~~~ly~td~~~ 326 (357)
++.. ....|..+++. +|.||++||..
T Consensus 313 ~l~~~~~~~rp~dv~~~pDG~Lyv~d~~~ 341 (367)
T TIGR02604 313 FLRSNDTWFRPVNVTVGPDGALYVSDWYD 341 (367)
T ss_pred eEecCCCcccccceeECCCCCEEEEEecc
Confidence 3332 22578888887 68999999554
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.4e-12 Score=118.06 Aligned_cols=269 Identities=13% Similarity=0.084 Sum_probs=172.6
Q ss_pred EEeecCCCCeEEEEEeC--CcEEEEEcCCCCcceEe--ccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCccee
Q psy13635 33 YALSHHVAAQMLLFATS--KDIRIANLSRPLKPVTI--IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSK 108 (357)
Q Consensus 33 ~~~~~~~~~~~l~~~~~--~~i~~~~~~~~~~~~~~--~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~ 108 (357)
..++.++...+|+.++. ..|..++++.....+.. .+....|..++++++++.||.++..++.|..++++.......
T Consensus 38 ~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~ 117 (330)
T PRK11028 38 QPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVA 117 (330)
T ss_pred ccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCC
Confidence 33455666677777753 55766666532233222 233457899999999999999998888888877753210001
Q ss_pred EEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCc-eEEEEecCCCCcceeeeeccCcccccCCceEEEeCCC
Q psy13635 109 HNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKK-RKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVA 187 (357)
Q Consensus 109 ~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~-~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~ 187 (357)
......+...|.++++++.++.+|+++...++|.+++++... .......... ......|.++++++.+
T Consensus 118 ~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~-----------~~~g~~p~~~~~~pdg 186 (330)
T PRK11028 118 PIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVT-----------TVEGAGPRHMVFHPNQ 186 (330)
T ss_pred ceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCcee-----------cCCCCCCceEEECCCC
Confidence 111123446799999999999999999999999999986421 1000000000 0112479999999999
Q ss_pred CeEEEEeCCCCeEEEEEcCC--CceEEEec-----C---CCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecC--CCce
Q psy13635 188 RNLYWTDTGTDRIEVCRLEG--THRKVLVN-----T---DLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLN--GGER 255 (357)
Q Consensus 188 ~~lY~td~~~~~I~~~~~~g--~~~~~~~~-----~---~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~d--g~~~ 255 (357)
+++|+++...+.|...+.+. ...+.+.. . ....|.+++++|.+.+||+++... ..|..++.+ +...
T Consensus 187 ~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~--~~I~v~~i~~~~~~~ 264 (330)
T PRK11028 187 QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTA--SLISVFSVSEDGSVL 264 (330)
T ss_pred CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCC--CeEEEEEEeCCCCeE
Confidence 99999999889998888762 12222111 1 112455799999888999998764 377766664 3322
Q ss_pred EEEee-CCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCC--CeEEEec-CCCCceEEEEE
Q psy13635 256 VLLVK-DRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGN--NRRELIN-ENLPHVFGISL 314 (357)
Q Consensus 256 ~~~~~-~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~--~~~~i~~-~~~~~p~gia~ 314 (357)
+.+-. .....|.++++++++.+||++....+.|..++.+.. ....+.. .....|.++++
T Consensus 265 ~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 265 SFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGRYAVGQGPMWVSV 327 (330)
T ss_pred EEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEccccccCCCceEEEE
Confidence 22211 112579999999999999999988888888876532 2222211 12557888776
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-10 Score=103.09 Aligned_cols=295 Identities=16% Similarity=0.167 Sum_probs=200.2
Q ss_pred CCcEEEEEcCC---CCcceEeccCCCcEEEEEEEccCCEEEEEeCC--CCeEEEEEcCCCCcceeEEEEeCC---cCCce
Q psy13635 49 SKDIRIANLSR---PLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG--TEMISCCTFDGNNVGSKHNVITNG---LITPD 120 (357)
Q Consensus 49 ~~~i~~~~~~~---~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~--~~~I~~~~~~g~~~~~~~~~~~~~---~~~p~ 120 (357)
+..|.++++++ .......+....+|.-|++++++..||..... .+.|-....|..+ ..-+++... -..|.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~--G~Lt~ln~~~~~g~~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDD--GRLTFLNRQTLPGSPPC 92 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCC--CeEEEeeccccCCCCCe
Confidence 44687777764 23444456788899999999999999998776 6677666666532 113443322 24569
Q ss_pred eEEEEcCCCeEEEEeCCCCEEEEEEc--CCCceEE---EEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeC
Q psy13635 121 GLAIDWLTEKLYWTDSETNKLEVSSL--DGKKRKV---LYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDT 195 (357)
Q Consensus 121 glavd~~~~~ly~td~~~~~I~~~~~--~g~~~~~---~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~ 195 (357)
-+++|..++.||.++...+.|.+..+ +|..... +...+. .|.. .+.-.++...-++|.++.|+++|-
T Consensus 93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~-~p~~-------rQ~~~h~H~a~~tP~~~~l~v~DL 164 (346)
T COG2706 93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGS-GPHE-------RQESPHVHSANFTPDGRYLVVPDL 164 (346)
T ss_pred EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCC-CCCc-------cccCCccceeeeCCCCCEEEEeec
Confidence 99999988999999999999988776 4554332 111111 1110 112234667788999999999999
Q ss_pred CCCeEEEEEcCCCceEEEec---CCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCC--ceEEEe-----eC---C
Q psy13635 196 GTDRIEVCRLEGTHRKVLVN---TDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGG--ERVLLV-----KD---R 262 (357)
Q Consensus 196 ~~~~I~~~~~~g~~~~~~~~---~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~--~~~~~~-----~~---~ 262 (357)
+.++|..++++......... .....|+-|+++|.....|+...-. +.|.....+.. ...++. .. +
T Consensus 165 G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~--stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g 242 (346)
T COG2706 165 GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELN--STVDVLEYNPAVGKFEELQTIDTLPEDFTG 242 (346)
T ss_pred CCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccC--CEEEEEEEcCCCceEEEeeeeccCccccCC
Confidence 99999998887332222111 2446899999999988899988774 58888887763 222221 11 2
Q ss_pred CCCceEEEEecCCCEEEEEeCCCCeEEEEeC--CCCCeEEEe--cCCCCceEEEEEE--CCEEEEEeCCCCeE--EEEeC
Q psy13635 263 LGWPNGITLDVDNEKLYWCDAKTDKIEMIDF--DGNNRRELI--NENLPHVFGISLL--GDYVYWTDWQRRSI--DRVNK 334 (357)
Q Consensus 263 l~~P~giaid~~~~~lY~~d~~~~~I~~~~~--dG~~~~~i~--~~~~~~p~gia~~--~~~ly~td~~~~~I--~~~~~ 334 (357)
-.+...|.+.+++..||+++.+.+.|..+.. +|.....+. ......|.++.+. +++|+++...++.| +++++
T Consensus 243 ~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 243 TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 3455789999999999999999998877655 444333221 1234568777775 68999999888765 56777
Q ss_pred ccCceeEEEe-cccCCceeeee
Q psy13635 335 ITGNDREVII-ERSCTGVTRRR 355 (357)
Q Consensus 335 ~~g~~~~~i~-~~l~~p~~i~~ 355 (357)
.+|+....-. -..+.|+-++.
T Consensus 323 ~TG~L~~~~~~~~~p~Pvcv~f 344 (346)
T COG2706 323 ETGRLTLLGRYAVVPEPVCVKF 344 (346)
T ss_pred CCceEEecccccCCCCcEEEEE
Confidence 7777666554 35678887765
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.6e-11 Score=114.76 Aligned_cols=249 Identities=16% Similarity=0.137 Sum_probs=182.4
Q ss_pred EEEEeecCCCCeEEEEEe--CCcEEEEEcCCCCcceEecc-CCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcce
Q psy13635 31 FWYALSHHVAAQMLLFAT--SKDIRIANLSRPLKPVTIIK-DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGS 107 (357)
Q Consensus 31 ~~~~~~~~~~~~~l~~~~--~~~i~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~ 107 (357)
.+..+........+++++ .+.+..++.. ....+.... ....|.++++.+.+.++|+.+...+.|..++.+...
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~--- 107 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNT--- 107 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccc---
Confidence 455555555555566666 3334444443 222222222 226789999999999999999999999999966553
Q ss_pred eEEEEeCCcCCceeEEEEcCCCeEEEEeC--CCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeC
Q psy13635 108 KHNVITNGLITPDGLAIDWLTEKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDW 185 (357)
Q Consensus 108 ~~~~~~~~~~~p~glavd~~~~~ly~td~--~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~ 185 (357)
.......+. .|.++++++.++.+|+++. .+++|.+++............+ ..|.++++|+
T Consensus 108 ~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG-----------------~~P~~~a~~p 169 (381)
T COG3391 108 VLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG-----------------NTPTGVAVDP 169 (381)
T ss_pred eeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC-----------------CCcceEEECC
Confidence 233333333 8999999999999999999 4799999988765443333332 2689999999
Q ss_pred CCCeEEEEeCCCCeEEEEEcCCCceEE-E---ecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEE--e
Q psy13635 186 VARNLYWTDTGTDRIEVCRLEGTHRKV-L---VNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLL--V 259 (357)
Q Consensus 186 ~~~~lY~td~~~~~I~~~~~~g~~~~~-~---~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~--~ 259 (357)
.++++|+++...++|..++..+..... - .-.....|.++++++...++|+++.......+.+.+......... .
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~ 249 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP 249 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc
Confidence 999999999999999999988765542 0 012457899999999988999999885224888888887666554 3
Q ss_pred eCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEe
Q psy13635 260 KDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELI 302 (357)
Q Consensus 260 ~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~ 302 (357)
...+ .|.++++++.+..+|+++...+.+..++..........
T Consensus 250 ~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~ 291 (381)
T COG3391 250 VGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTG 291 (381)
T ss_pred cccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeee
Confidence 3445 89999999999999999999999999998776554443
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.9e-11 Score=110.16 Aligned_cols=246 Identities=17% Similarity=0.179 Sum_probs=155.5
Q ss_pred CCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEE----EEeCCcCCceeEEEEc---CCCeEEEEeCCC----
Q psy13635 70 LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHN----VITNGLITPDGLAIDW---LTEKLYWTDSET---- 138 (357)
Q Consensus 70 ~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~----~~~~~~~~p~glavd~---~~~~ly~td~~~---- 138 (357)
|.+|++|++.++ +++|+++. .+.|+++..+|... .... +...+.....|+|+++ .++.||++-...
T Consensus 1 L~~P~~~a~~pd-G~l~v~e~-~G~i~~~~~~g~~~-~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~ 77 (331)
T PF07995_consen 1 LNNPRSMAFLPD-GRLLVAER-SGRIWVVDKDGSLK-TPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDG 77 (331)
T ss_dssp ESSEEEEEEETT-SCEEEEET-TTEEEEEETTTEEC-EEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSS
T ss_pred CCCceEEEEeCC-CcEEEEeC-CceEEEEeCCCcCc-ceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCC
Confidence 468999999985 89999998 88999999777630 0111 1233456789999998 358888876532
Q ss_pred ----CEEEEEEcCCC-----ceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC-------------
Q psy13635 139 ----NKLEVSSLDGK-----KRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG------------- 196 (357)
Q Consensus 139 ----~~I~~~~~~g~-----~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~------------- 196 (357)
.+|.|+..+.. ..+.++...-. .....+.-.+|++++ .|+||++-..
T Consensus 78 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~----------~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~ 146 (331)
T PF07995_consen 78 GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPD----------TSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSL 146 (331)
T ss_dssp SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-----------CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSS
T ss_pred CCcceeeEEEeccCCccccccceEEEEEeCC----------CCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccc
Confidence 57888877554 12233221100 013445667899996 5699998532
Q ss_pred CCeEEEEEcCCC-------------ceEEEecCCCCCceEEEEeCCCCEEEEEeCCCC-CCeEEEEecCC----------
Q psy13635 197 TDRIEVCRLEGT-------------HRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEK-RPKIERSLLNG---------- 252 (357)
Q Consensus 197 ~~~I~~~~~~g~-------------~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~-~~~I~~~~~dg---------- 252 (357)
.++|.+++++|+ ..++ ...++.+|.++++||.+|.||.+|.+.. .-.|.++...+
T Consensus 147 ~G~ilri~~dG~~p~dnP~~~~~~~~~~i-~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~ 225 (331)
T PF07995_consen 147 RGKILRIDPDGSIPADNPFVGDDGADSEI-YAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGG 225 (331)
T ss_dssp TTEEEEEETTSSB-TTSTTTTSTTSTTTE-EEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSS
T ss_pred cceEEEecccCcCCCCCccccCCCceEEE-EEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCC
Confidence 248999999987 2333 3457899999999998899999998753 12343333211
Q ss_pred -----C----------c-eEEEeeCCCCCceEEEEec------CCCEEEEEeCCCCeEEEEeCCCCC----eEEEecCCC
Q psy13635 253 -----G----------E-RVLLVKDRLGWPNGITLDV------DNEKLYWCDAKTDKIEMIDFDGNN----RRELINENL 306 (357)
Q Consensus 253 -----~----------~-~~~~~~~~l~~P~giaid~------~~~~lY~~d~~~~~I~~~~~dG~~----~~~i~~~~~ 306 (357)
. . .-......-..|.|+++-. ..+.+++++...++|+++.++... .+.++ ...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~ 304 (331)
T PF07995_consen 226 PKYSGPPIGDAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFL-GGF 304 (331)
T ss_dssp CSTTSS-ECTGSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEEC-TTS
T ss_pred CCCCCCccccccCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEcc-ccC
Confidence 0 0 0001111224688998852 367899999999999999986332 23333 334
Q ss_pred C-ceEEEEEE-CCEEEEEeCCCCeEEE
Q psy13635 307 P-HVFGISLL-GDYVYWTDWQRRSIDR 331 (357)
Q Consensus 307 ~-~p~gia~~-~~~ly~td~~~~~I~~ 331 (357)
. .|.+|++. +|.||+++..+++|+|
T Consensus 305 ~~r~~~v~~~pDG~Lyv~~d~~G~iyR 331 (331)
T PF07995_consen 305 GGRPRDVAQGPDGALYVSDDSDGKIYR 331 (331)
T ss_dssp SS-EEEEEEETTSEEEEEE-TTTTEEE
T ss_pred CCCceEEEEcCCCeEEEEECCCCeEeC
Confidence 4 78999998 6899999998899986
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG1215|consensus | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-11 Score=129.21 Aligned_cols=306 Identities=21% Similarity=0.351 Sum_probs=221.7
Q ss_pred EEEEEeCCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCC--eEEEEEcCCCCcceeEEEEeCCcCCce
Q psy13635 43 MLLFATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTE--MISCCTFDGNNVGSKHNVITNGLITPD 120 (357)
Q Consensus 43 ~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~--~I~~~~~~g~~~~~~~~~~~~~~~~p~ 120 (357)
.++.+....+..+..+++..-.........+......+.++..||++.... .+...+.++.. ........+.-|.
T Consensus 211 ~~~~~~~~~~~~~~c~g~~~~i~~~~~~Dg~~dc~~~~de~~~~~~~~~~~~~e~~~~~~~~~~---~~~~~~g~~d~pd 287 (877)
T KOG1215|consen 211 RIYWTDDSRIEVTRCDGSSRCILISEVCDGPRDCVDGPDEGVMNCSDATCEAPEIECADGDCSD---RQKLCDGDLDCPD 287 (877)
T ss_pred cccccCCcceeEEEecCCCcEEeehhccCCCcccccCCcCceeEeeccccCCcceeecCCCCcc---ceEEecCccCCCC
Confidence 343333323666777664455555667778888888888888999998764 67776666664 2333445555699
Q ss_pred eEEEEcCCCeEEE---------------------EeCCCCEEEEEE-cCCCceEEEEec-------------C-------
Q psy13635 121 GLAIDWLTEKLYW---------------------TDSETNKLEVSS-LDGKKRKVLYWE-------------D------- 158 (357)
Q Consensus 121 glavd~~~~~ly~---------------------td~~~~~I~~~~-~~g~~~~~~~~~-------------~------- 158 (357)
|.+.+--...+|| ++..+..+.+.. ..+....+.+.. .
T Consensus 288 g~de~~~~~~~~~~~~~d~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 367 (877)
T KOG1215|consen 288 GLDEDYCKKKLYWSMNVDGSGRRILLSKLCHGYWTDGLNECAERVLKCSHKCPDVSVGPRCDCMGAKVLPLGARTDSNPC 367 (877)
T ss_pred cccccccccceeeeeecccCCceeeecccCccccccccccchhhcccccCCCCccccCCcccCCccceecccccccCCcc
Confidence 9998876777774 332221111110 000000000000 0
Q ss_pred ---------C---CCcceeeee----------------------------------------ccCcccccCCceEEEeCC
Q psy13635 159 ---------I---DQPRAIASY----------------------------------------KLPTIEVEHPDGVAVDWV 186 (357)
Q Consensus 159 ---------~---~~p~~i~~~----------------------------------------~~~~~~~~~p~glavD~~ 186 (357)
+ ..|.....+ ..|..++..+..+.+|..
T Consensus 368 ~~~~g~Csq~C~~~~p~~~~c~c~~g~~~~~~~c~~~~~~~~~l~~s~~~~ir~~~~~~~~~~~p~~~~~~~~~~d~d~~ 447 (877)
T KOG1215|consen 368 ESDNGGCSQLCVPNSPGTFKCACSPGYELRLDKCEASDQPEAFLLFSNRHDIRRISLDCSDVSRPLEGIKNAVALDFDVL 447 (877)
T ss_pred cccCCccceeccCCCCCceeEecCCCcEeccCCceecCCCCcEEEEecCccceecccCCCcceEEccCCccceEEEEEec
Confidence 0 001111110 012333356777888888
Q ss_pred CCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCc
Q psy13635 187 ARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWP 266 (357)
Q Consensus 187 ~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P 266 (357)
++.+||+|.....|.....++.....+...+.-.|.++++|-..+.+||+|... ..+...+++|+.+.+++...+..|
T Consensus 448 ~~~i~~~d~~~~~i~~~~~~~~~~~~~~~~g~~~~~~lavD~~~~~~y~tDe~~--~~i~v~~~~g~~~~vl~~~~l~~~ 525 (877)
T KOG1215|consen 448 NNRIYWADLSDEKICRASQDGSSECELCGDGLCIPEGLAVDWIGDNIYWTDEGN--CLIEVADLDGSSRKVLVSKDLDLP 525 (877)
T ss_pred CCEEEEEeccCCeEeeeccCCCccceEeccCccccCcEEEEeccCCceecccCC--ceeEEEEccCCceeEEEecCCCCc
Confidence 999999999999999999999877776777788999999999999999999995 499999999999889988888999
Q ss_pred eEEEEecCCCEEEEEeCC-CCeEEEEeCCCCCeEEEecCCCCceEEEEEE--CCEEEEEeCCCC-eEEEEeCccCceeE-
Q psy13635 267 NGITLDVDNEKLYWCDAK-TDKIEMIDFDGNNRRELINENLPHVFGISLL--GDYVYWTDWQRR-SIDRVNKITGNDRE- 341 (357)
Q Consensus 267 ~giaid~~~~~lY~~d~~-~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~--~~~ly~td~~~~-~I~~~~~~~g~~~~- 341 (357)
..+++|+..+.+||+|++ ..+|.+..+||..+..++..++..|.|++++ .+.+||+|.... .|.+++- +|+...
T Consensus 526 r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~-~g~~r~~ 604 (877)
T KOG1215|consen 526 RSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLVTNGILWPNGLTIDYETDRLYWADAKLDYTIESANM-DGQNRRV 604 (877)
T ss_pred cceeeccccCeeEEecCCCCchhhhhcCCCCCceEEEeCCccCCCcceEEeecceeEEEcccCCcceeeeec-CCCceEE
Confidence 999999999999999987 5589999999999999988778999999997 699999999988 6888887 788776
Q ss_pred EEecccCCceeee
Q psy13635 342 VIIERSCTGVTRR 354 (357)
Q Consensus 342 ~i~~~l~~p~~i~ 354 (357)
.+...+..|+++.
T Consensus 605 ~~~~~~~~p~~~~ 617 (877)
T KOG1215|consen 605 VDSEDLPHPFGLS 617 (877)
T ss_pred eccccCCCceEEE
Confidence 6666788888775
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.6e-11 Score=101.47 Aligned_cols=255 Identities=11% Similarity=0.045 Sum_probs=178.8
Q ss_pred CcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCE
Q psy13635 61 LKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNK 140 (357)
Q Consensus 61 ~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~ 140 (357)
...+..+.+-..|..++-++ ++.+|+++..++.|-+.+...++ .++.-...-..|.+|.+++ ++..+++|.+. .
T Consensus 52 s~~~fpvp~G~ap~dvapap-dG~VWft~qg~gaiGhLdP~tGe---v~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-a 125 (353)
T COG4257 52 SSAEFPVPNGSAPFDVAPAP-DGAVWFTAQGTGAIGHLDPATGE---VETYPLGSGASPHGIVVGP-DGSAWITDTGL-A 125 (353)
T ss_pred ccceeccCCCCCccccccCC-CCceEEecCccccceecCCCCCc---eEEEecCCCCCCceEEECC-CCCeeEecCcc-e
Confidence 34555667777888888876 78899999999999999998774 2344334446899999996 78899999876 8
Q ss_pred EEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCC
Q psy13635 141 LEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVE 220 (357)
Q Consensus 141 I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~ 220 (357)
|.|++......+.+-... + ..-..-+-..+| ..|+|+++... +---+.|+.....++.-......
T Consensus 126 I~R~dpkt~evt~f~lp~-~------------~a~~nlet~vfD-~~G~lWFt~q~-G~yGrLdPa~~~i~vfpaPqG~g 190 (353)
T COG4257 126 IGRLDPKTLEVTRFPLPL-E------------HADANLETAVFD-PWGNLWFTGQI-GAYGRLDPARNVISVFPAPQGGG 190 (353)
T ss_pred eEEecCcccceEEeeccc-c------------cCCCcccceeeC-CCccEEEeecc-ccceecCcccCceeeeccCCCCC
Confidence 999887444333331111 0 011233456788 57799998874 22335555555555554445578
Q ss_pred ceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEee-CC-CCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCC-
Q psy13635 221 PRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVK-DR-LGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNN- 297 (357)
Q Consensus 221 P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~-~~-l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~- 297 (357)
|+||++.|+ |.+|++....+ -|.+++.-....+++.. .. -..-..+-.| .-++++.+++++++++++++.-..
T Consensus 191 pyGi~atpd-Gsvwyaslagn--aiaridp~~~~aev~p~P~~~~~gsRriwsd-pig~~wittwg~g~l~rfdPs~~sW 266 (353)
T COG4257 191 PYGICATPD-GSVWYASLAGN--AIARIDPFAGHAEVVPQPNALKAGSRRIWSD-PIGRAWITTWGTGSLHRFDPSVTSW 266 (353)
T ss_pred CcceEECCC-CcEEEEecccc--ceEEcccccCCcceecCCCcccccccccccC-ccCcEEEeccCCceeeEeCcccccc
Confidence 999999985 99999988754 88888865444433321 22 1223456677 678999999999999999986543
Q ss_pred eEEEecCCCCceEEEEEE-CCEEEEEeCCCCeEEEEeCccCcee
Q psy13635 298 RRELINENLPHVFGISLL-GDYVYWTDWQRRSIDRVNKITGNDR 340 (357)
Q Consensus 298 ~~~i~~~~~~~p~gia~~-~~~ly~td~~~~~I~~~~~~~g~~~ 340 (357)
.+.-+.....+|+.+-+| .|+++.+|+..+.|.++|.++-+..
T Consensus 267 ~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpeta~ft 310 (353)
T COG4257 267 IEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFT 310 (353)
T ss_pred eeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCcccceEE
Confidence 333344456689999999 4899999999999999998554443
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.7e-10 Score=99.52 Aligned_cols=198 Identities=15% Similarity=0.123 Sum_probs=127.0
Q ss_pred cCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeC
Q psy13635 116 LITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDT 195 (357)
Q Consensus 116 ~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~ 195 (357)
...+.||++++.++.||.+.-....|..++++|...+.+.-. ++..|.||++- .++.+.+++.
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~----------------g~~D~EgI~y~-g~~~~vl~~E 83 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLD----------------GFGDYEGITYL-GNGRYVLSEE 83 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-S----------------S-SSEEEEEE--STTEEEEEET
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCC----------------CCCCceeEEEE-CCCEEEEEEc
Confidence 356999999999999999888899999999999877776433 34578888885 5667777887
Q ss_pred CCCeEEEEEcC--CCce--E---EEec--C--CCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEec--CCCceEEEee--
Q psy13635 196 GTDRIEVCRLE--GTHR--K---VLVN--T--DLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLL--NGGERVLLVK-- 260 (357)
Q Consensus 196 ~~~~I~~~~~~--g~~~--~---~~~~--~--~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~--dg~~~~~~~~-- 260 (357)
..+++..+..+ +... . .+.. . .-..-.|||.|+.+++||++..... ..|+.++. .+........
T Consensus 84 r~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P-~~l~~~~~~~~~~~~~~~~~~~ 162 (248)
T PF06977_consen 84 RDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKP-KRLYEVNGFPGGFDLFVSDDQD 162 (248)
T ss_dssp TTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSS-EEEEEEESTT-SS--EEEE-HH
T ss_pred CCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCC-hhhEEEccccCccceeeccccc
Confidence 77888877763 2221 1 1111 1 1123579999999999999987754 46777776 3332222221
Q ss_pred -----CCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEec--------CCCCceEEEEEE-CCEEEEEeCCC
Q psy13635 261 -----DRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELIN--------ENLPHVFGISLL-GDYVYWTDWQR 326 (357)
Q Consensus 261 -----~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~--------~~~~~p~gia~~-~~~ly~td~~~ 326 (357)
..+..|.++++|+..++||+....+.++..++.+|.-...+.- ..+.+|.|||++ +|.||+++- .
T Consensus 163 ~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE-p 241 (248)
T PF06977_consen 163 LDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE-P 241 (248)
T ss_dssp HH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEET-T
T ss_pred cccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcC-C
Confidence 1356799999999999999999999999999999985543321 236789999999 599999984 4
Q ss_pred CeEEEE
Q psy13635 327 RSIDRV 332 (357)
Q Consensus 327 ~~I~~~ 332 (357)
+..+++
T Consensus 242 Nlfy~f 247 (248)
T PF06977_consen 242 NLFYRF 247 (248)
T ss_dssp TEEEEE
T ss_pred ceEEEe
Confidence 577766
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.6e-09 Score=96.15 Aligned_cols=253 Identities=11% Similarity=0.074 Sum_probs=165.0
Q ss_pred ecCCCCeEEEEEe--CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEe
Q psy13635 36 SHHVAAQMLLFAT--SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT 113 (357)
Q Consensus 36 ~~~~~~~~l~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~ 113 (357)
..++....++.+. .+.|+.+|+.+.. ..........+..+++++.++.+|.+...++.|...++.... ....+.
T Consensus 37 ~~~~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~---~~~~~~ 112 (300)
T TIGR03866 37 TLSKDGKLLYVCASDSDTIQVIDLATGE-VIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRK---VLAEIP 112 (300)
T ss_pred EECCCCCEEEEEECCCCeEEEEECCCCc-EEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCe---EEeEee
Confidence 3344444555554 3568889987632 332233344577889999888899887777889999987653 122222
Q ss_pred CCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEE
Q psy13635 114 NGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWT 193 (357)
Q Consensus 114 ~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~t 193 (357)
. -..|.++++++.+..++.+......+..++............+ ..|..+++++.++.||++
T Consensus 113 ~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~-----------------~~~~~~~~s~dg~~l~~~ 174 (300)
T TIGR03866 113 V-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD-----------------QRPRFAEFTADGKELWVS 174 (300)
T ss_pred C-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-----------------CCccEEEECCCCCEEEEE
Confidence 1 2358899999867666666655455666666543322111111 257788998888888887
Q ss_pred eCCCCeEEEEEcCCCce-EEEecC------CCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCc
Q psy13635 194 DTGTDRIEVCRLEGTHR-KVLVNT------DLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWP 266 (357)
Q Consensus 194 d~~~~~I~~~~~~g~~~-~~~~~~------~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P 266 (357)
....+.|...++..... ..+... ....|.+++++|....+|++.... .+|...+............ -..|
T Consensus 175 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~--~~i~v~d~~~~~~~~~~~~-~~~~ 251 (300)
T TIGR03866 175 SEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA--NRVAVVDAKTYEVLDYLLV-GQRV 251 (300)
T ss_pred cCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC--CeEEEEECCCCcEEEEEEe-CCCc
Confidence 66667899888875432 222110 123578999999877888887664 4788888765444333322 2468
Q ss_pred eEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEE
Q psy13635 267 NGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISL 314 (357)
Q Consensus 267 ~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~ 314 (357)
.++++++.+.+||.+....+.|...+.++.....-+. ....|.+|++
T Consensus 252 ~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~ 298 (300)
T TIGR03866 252 WQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK-VGRLPWGVVV 298 (300)
T ss_pred ceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-cccccceeEe
Confidence 8999998888999888778899999998766433333 3578999885
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.5e-09 Score=96.07 Aligned_cols=275 Identities=12% Similarity=0.109 Sum_probs=171.6
Q ss_pred CCeEEEEEeC------CcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeC---------CCCeEEEEEcCCCC
Q psy13635 40 AAQMLLFATS------KDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDH---------GTEMISCCTFDGNN 104 (357)
Q Consensus 40 ~~~~l~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~---------~~~~I~~~~~~g~~ 104 (357)
+...+|+.+. +.|..+|.+. .+..-.++....|.++ ++++...||++.. .++.|..++.....
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~-~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~ 88 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEA-GRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL 88 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCC-CEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc
Confidence 3344666664 4689999977 3444445555678887 9999999999999 88999999998775
Q ss_pred cceeEEEEe-C-----CcCCceeEEEEcCCCeEEEEeCC-CCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccC
Q psy13635 105 VGSKHNVIT-N-----GLITPDGLAIDWLTEKLYWTDSE-TNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEH 177 (357)
Q Consensus 105 ~~~~~~~~~-~-----~~~~p~glavd~~~~~ly~td~~-~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~ 177 (357)
. ..++.. . ....|..+++.+.++.||+++.. .+.+.++++.......-+..
T Consensus 89 ~--~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-------------------- 146 (352)
T TIGR02658 89 P--IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-------------------- 146 (352)
T ss_pred E--EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC--------------------
Confidence 2 122221 1 12345699999999999999966 89999999876544322211
Q ss_pred CceEEEeCCCCeEEEEeCCC-------CeEEEEEc--CCCceE---EEecC----CCCCceEEEEeCCCCEEEEEeCCCC
Q psy13635 178 PDGVAVDWVARNLYWTDTGT-------DRIEVCRL--EGTHRK---VLVNT----DLVEPRAITLSPAHGYLFWSDWNEK 241 (357)
Q Consensus 178 p~glavD~~~~~lY~td~~~-------~~I~~~~~--~g~~~~---~~~~~----~~~~P~giavd~~~g~Ly~~d~~~~ 241 (357)
| ....+|.+.... ++...+.+ +|+... .+... -+.+| .+.+.+|+.+|....
T Consensus 147 p-------~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e-- 214 (352)
T TIGR02658 147 P-------DCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYT-- 214 (352)
T ss_pred C-------CCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC---ceEcCCCcEEEEecC--
Confidence 1 111233322211 12222222 222110 11111 12566 345534666655554
Q ss_pred CCeEEEEecCCCceEEEe-----eCC----CCCceE---EEEecCCCEEEEEe-C--------CCCeEEEEeCCCCCeEE
Q psy13635 242 RPKIERSLLNGGERVLLV-----KDR----LGWPNG---ITLDVDNEKLYWCD-A--------KTDKIEMIDFDGNNRRE 300 (357)
Q Consensus 242 ~~~I~~~~~dg~~~~~~~-----~~~----l~~P~g---iaid~~~~~lY~~d-~--------~~~~I~~~~~dG~~~~~ 300 (357)
+.|..+++.+....... ... --.|.| +++++.++++|++. . ..+.|+.+|.....+..
T Consensus 215 -G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~ 293 (352)
T TIGR02658 215 -GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLR 293 (352)
T ss_pred -CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEE
Confidence 48999997665433221 111 124555 99999999999954 2 22689999986554433
Q ss_pred EecCCCCceEEEEEE--CC-EEEEEeCCCCeEEEEeCccCceeEEEecccCCcee
Q psy13635 301 LINENLPHVFGISLL--GD-YVYWTDWQRRSIDRVNKITGNDREVIIERSCTGVT 352 (357)
Q Consensus 301 i~~~~~~~p~gia~~--~~-~ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~ 352 (357)
-+. -...|.+|++. +. .||.++..++.|..+|..+++....+..-...|.=
T Consensus 294 ~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~vg~~P~~ 347 (352)
T TIGR02658 294 KIE-LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVNQLGRGPQV 347 (352)
T ss_pred EEe-CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeeccCCCCCeE
Confidence 332 34578888885 57 89999999999999999899988887454455543
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.7e-09 Score=94.01 Aligned_cols=206 Identities=14% Similarity=0.134 Sum_probs=125.2
Q ss_pred CCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCC
Q psy13635 69 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG 148 (357)
Q Consensus 69 ~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g 148 (357)
-..++.|++|++.++.||-.......|+..+.+|.- .+.+-..++.-|+||++- .++.+.+++...+++..+..+.
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~v---lr~i~l~g~~D~EgI~y~-g~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKV---LRRIPLDGFGDYEGITYL-GNGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEETT--E---EEEEE-SS-SSEEEEEE--STTEEEEEETTTTEEEEEEE--
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCE---EEEEeCCCCCCceeEEEE-CCCEEEEEEcCCCcEEEEEEec
Confidence 344699999999999999888888999999998763 344556778899999996 4566666787788999888732
Q ss_pred --CceEEE--EecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCC-eEEEEEc--CCCceEEEec------
Q psy13635 149 --KKRKVL--YWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTD-RIEVCRL--EGTHRKVLVN------ 215 (357)
Q Consensus 149 --~~~~~~--~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~-~I~~~~~--~g~~~~~~~~------ 215 (357)
.....- -.-.+. ++........|||.|+.+++||++....- .|+..+. .+........
T Consensus 96 ~~~~~~~~~~~~~~l~---------~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~ 166 (248)
T PF06977_consen 96 DTTSLDRADVQKISLG---------FPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDD 166 (248)
T ss_dssp --TT--EEEEEEEE------------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-H
T ss_pred cccccchhhceEEecc---------cccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccc
Confidence 222111 000011 01223346799999999999999866543 5777765 2222222211
Q ss_pred -CCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEee--------CCCCCceEEEEecCCCEEEEEeCCCC
Q psy13635 216 -TDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVK--------DRLGWPNGITLDVDNEKLYWCDAKTD 286 (357)
Q Consensus 216 -~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~--------~~l~~P~giaid~~~~~lY~~d~~~~ 286 (357)
..+..|.++++||.+|.||+..... .+|...+.+|......-- ..+.+|-|||+| .+|+||++.. -+
T Consensus 167 ~~~~~d~S~l~~~p~t~~lliLS~es--~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d-~~G~LYIvsE-pN 242 (248)
T PF06977_consen 167 KLFVRDLSGLSYDPRTGHLLILSDES--RLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFD-PDGNLYIVSE-PN 242 (248)
T ss_dssp T--SS---EEEEETTTTEEEEEETTT--TEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE--TT--EEEEET-TT
T ss_pred cceeccccceEEcCCCCeEEEEECCC--CeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEEC-CCCCEEEEcC-Cc
Confidence 1356799999999999999998774 599999999885544322 236789999999 6899999986 44
Q ss_pred eEEEE
Q psy13635 287 KIEMI 291 (357)
Q Consensus 287 ~I~~~ 291 (357)
..+++
T Consensus 243 lfy~f 247 (248)
T PF06977_consen 243 LFYRF 247 (248)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 55554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1520|consensus | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.9e-11 Score=109.76 Aligned_cols=203 Identities=15% Similarity=0.156 Sum_probs=141.7
Q ss_pred EEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCC
Q psy13635 109 HNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVAR 188 (357)
Q Consensus 109 ~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~ 188 (357)
+.+...+...|..+++. .++.|+|+-...+.|.+++..-+. .....+.|..... ......|-||+++..+|
T Consensus 57 E~~~fd~~~~gp~~~v~-dg~il~~~g~~~Gwv~~~~~~~s~----~~~~~~~~~~~~~----e~~CGRPLGl~f~~~gg 127 (376)
T KOG1520|consen 57 ESLLFDPQGGGPYTGVV-DGRILKYTGNDDGWVKFADTKDST----NRSQCCDPGSFET----EPLCGRPLGIRFDKKGG 127 (376)
T ss_pred hhheecccCCCceEEEE-CCceEEEeccCceEEEEEeccccc----cccccCCCcceec----ccccCCcceEEeccCCC
Confidence 44555555566666666 477789998878888777653110 0111111111111 22346899999999999
Q ss_pred eEEEEeCCCCeEEEEEcCCCceEEEecC----CCCCceEEEEeCCCCEEEEEeCCCC---------------CCeEEEEe
Q psy13635 189 NLYWTDTGTDRIEVCRLEGTHRKVLVNT----DLVEPRAITLSPAHGYLFWSDWNEK---------------RPKIERSL 249 (357)
Q Consensus 189 ~lY~td~~~~~I~~~~~~g~~~~~~~~~----~~~~P~giavd~~~g~Ly~~d~~~~---------------~~~I~~~~ 249 (357)
.||++|... -++++++.|...+.+... .+...+++.|++ +|.+||||+... .+++.+.+
T Consensus 128 dL~VaDAYl-GL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD 205 (376)
T KOG1520|consen 128 DLYVADAYL-GLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYD 205 (376)
T ss_pred eEEEEecce-eeEEECCCCCcceeccccccCeeeeecCceeEcC-CCeEEEeccccccchhheEEeeecCCCccceEEec
Confidence 999999975 488899998876555543 244568999998 899999998753 35666666
Q ss_pred cCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCe--EEEecCC-CCceEEEEEEC-CEEEEEe
Q psy13635 250 LNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNR--RELINEN-LPHVFGISLLG-DYVYWTD 323 (357)
Q Consensus 250 ~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~--~~i~~~~-~~~p~gia~~~-~~ly~td 323 (357)
......+++ ..++..|+|+++.+++..+.+++....+|.++-+.|... .++..++ -..|..|..++ |+.|++-
T Consensus 206 ~~tK~~~VL-ld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~fWVal 282 (376)
T KOG1520|consen 206 PSTKVTKVL-LDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGHFWVAL 282 (376)
T ss_pred Ccccchhhh-hhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeECCCCCEEEEE
Confidence 554444444 478999999999999999999999999999999888654 2333443 45899999985 6666665
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2e-09 Score=93.15 Aligned_cols=258 Identities=12% Similarity=0.067 Sum_probs=179.5
Q ss_pred CcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCC
Q psy13635 50 KDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTE 129 (357)
Q Consensus 50 ~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~ 129 (357)
+.|-+.|...++..+..+..-..|++|.+.+ ++..|++|... .|.|++....+..+........-.+-+...+|+ .+
T Consensus 83 gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~-~G 159 (353)
T COG4257 83 GAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDP-WG 159 (353)
T ss_pred ccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccceEEeecccccCCCcccceeeCC-Cc
Confidence 4466777766666777778888999999998 67789999877 899998865541111112223334556778995 78
Q ss_pred eEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCc
Q psy13635 130 KLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTH 209 (357)
Q Consensus 130 ~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~ 209 (357)
+|+++.. .+--.|.+.-....++.- .-+...|+||.+.+ +|.+|++....+.|-++|+-...
T Consensus 160 ~lWFt~q-~G~yGrLdPa~~~i~vfp----------------aPqG~gpyGi~atp-dGsvwyaslagnaiaridp~~~~ 221 (353)
T COG4257 160 NLWFTGQ-IGAYGRLDPARNVISVFP----------------APQGGGPYGICATP-DGSVWYASLAGNAIARIDPFAGH 221 (353)
T ss_pred cEEEeec-cccceecCcccCceeeec----------------cCCCCCCcceEECC-CCcEEEEeccccceEEcccccCC
Confidence 8999886 333335554444444331 11335899999984 67899998888899999876544
Q ss_pred eEEEec-CC-CCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEE-eeCCCCCceEEEEecCCCEEEEEeCCCC
Q psy13635 210 RKVLVN-TD-LVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLL-VKDRLGWPNGITLDVDNEKLYWCDAKTD 286 (357)
Q Consensus 210 ~~~~~~-~~-~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~-~~~~l~~P~giaid~~~~~lY~~d~~~~ 286 (357)
.+++.. .. -+.-+.+-.||. |+++.+++++ +++++++.....=.+. +...-.+|..+-+| .-++++.+|...+
T Consensus 222 aev~p~P~~~~~gsRriwsdpi-g~~wittwg~--g~l~rfdPs~~sW~eypLPgs~arpys~rVD-~~grVW~sea~ag 297 (353)
T COG4257 222 AEVVPQPNALKAGSRRIWSDPI-GRAWITTWGT--GSLHRFDPSVTSWIEYPLPGSKARPYSMRVD-RHGRVWLSEADAG 297 (353)
T ss_pred cceecCCCcccccccccccCcc-CcEEEeccCC--ceeeEeCcccccceeeeCCCCCCCcceeeec-cCCcEEeeccccC
Confidence 444432 22 234566888876 9999999994 6999999876553332 22334678999999 7899999999999
Q ss_pred eEEEEeCCCCCeEEEecCCCCceEEEEEE--CCEEEEEeCCCCeEEEEe
Q psy13635 287 KIEMIDFDGNNRRELINENLPHVFGISLL--GDYVYWTDWQRRSIDRVN 333 (357)
Q Consensus 287 ~I~~~~~dG~~~~~i~~~~~~~p~gia~~--~~~ly~td~~~~~I~~~~ 333 (357)
.|.++|......+.+ ...-.++-.+..+ .|.++.++.+...+..+.
T Consensus 298 ai~rfdpeta~ftv~-p~pr~n~gn~ql~gr~ge~W~~e~gvd~lv~~r 345 (353)
T COG4257 298 AIGRFDPETARFTVL-PIPRPNSGNIQLDGRPGELWFTEAGVDALVTTR 345 (353)
T ss_pred ceeecCcccceEEEe-cCCCCCCCceeccCCCCceeecccCcceeEEEE
Confidence 999999876555433 3345566667777 488999998877766554
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-09 Score=103.40 Aligned_cols=202 Identities=18% Similarity=0.283 Sum_probs=134.9
Q ss_pred EEEEeCC--cCCceeEEEEcCCCeEEEEeCC------------CCEEEEEEc---CCCceE-EEEecCCCCcceeeeecc
Q psy13635 109 HNVITNG--LITPDGLAIDWLTEKLYWTDSE------------TNKLEVSSL---DGKKRK-VLYWEDIDQPRAIASYKL 170 (357)
Q Consensus 109 ~~~~~~~--~~~p~glavd~~~~~ly~td~~------------~~~I~~~~~---~g~~~~-~~~~~~~~~p~~i~~~~~ 170 (357)
.++++.. +.+|.+|++|. .++||+++.. .++|.++.- ||...+ .++
T Consensus 4 ~~l~A~~p~~~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vf--------------- 67 (367)
T TIGR02604 4 VTLFAAEPLLRNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVF--------------- 67 (367)
T ss_pred EEEEECCCccCCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEe---------------
Confidence 3444543 88999999995 7889999852 238888764 454332 233
Q ss_pred CcccccCCceEEEeCCCCeEEEEeCCCCeEEEE-EcCCC-----ceEEEecC---C----CCCceEEEEeCCCCEEEEEe
Q psy13635 171 PTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVC-RLEGT-----HRKVLVNT---D----LVEPRAITLSPAHGYLFWSD 237 (357)
Q Consensus 171 ~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~-~~~g~-----~~~~~~~~---~----~~~P~giavd~~~g~Ly~~d 237 (357)
.+.+..|.||++.+ ++ ||+++. ..|.++ +.+|. ..++++.. . ...|++++++|. |+||+++
T Consensus 68 -a~~l~~p~Gi~~~~-~G-lyV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpD-G~LYv~~ 141 (367)
T TIGR02604 68 -AEELSMVTGLAVAV-GG-VYVATP--PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPD-GWLYFNH 141 (367)
T ss_pred -ecCCCCccceeEec-CC-EEEeCC--CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCC-CCEEEec
Confidence 23456799999973 55 999875 467777 44432 23344331 1 234889999985 8999987
Q ss_pred CCCC-----------------CCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCC--CC--
Q psy13635 238 WNEK-----------------RPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFD--GN-- 296 (357)
Q Consensus 238 ~~~~-----------------~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~d--G~-- 296 (357)
.... .+.|+|++.+|+..+.+ ..++.+|.|+++|+ .+.+|++|...+...++..- |.
T Consensus 142 G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~-a~G~rnp~Gl~~d~-~G~l~~tdn~~~~~~~i~~~~~g~~~ 219 (367)
T TIGR02604 142 GNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVV-AHGFQNPYGHSVDS-WGDVFFCDNDDPPLCRVTPVAEGGRN 219 (367)
T ss_pred ccCCCceeccCCCccCcccccCceEEEEecCCCeEEEE-ecCcCCCccceECC-CCCEEEEccCCCceeEEccccccccc
Confidence 7310 25799999999876554 57899999999995 78999999866555544421 10
Q ss_pred ------C----------eEEE-----------------ecCCCCceEEEEEE---------CCEEEEEeCCCCeEEEEeC
Q psy13635 297 ------N----------RREL-----------------INENLPHVFGISLL---------GDYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 297 ------~----------~~~i-----------------~~~~~~~p~gia~~---------~~~ly~td~~~~~I~~~~~ 334 (357)
. .... .......|.|+++. .+.++++++..+.|.++..
T Consensus 220 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~~g~~fv~~~~~~~v~~~~l 299 (367)
T TIGR02604 220 GYQSFNGRRYDHADRGADHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEYRGLLLVGDAHGQLIVRYSL 299 (367)
T ss_pred CCCCCCCcccccccccccccccccccccccccccccccccCCCccccEEEEeCCCcCCHHHCCCEEeeeccCCEEEEEEe
Confidence 0 0000 00012368899886 2689999999999998875
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.8e-08 Score=92.59 Aligned_cols=293 Identities=15% Similarity=0.098 Sum_probs=167.8
Q ss_pred EEEEEe--CCcEEEEEcCCCCcceEeccCCCcE-EEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCc
Q psy13635 43 MLLFAT--SKDIRIANLSRPLKPVTIIKDLEEG-AAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITP 119 (357)
Q Consensus 43 ~l~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~-~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p 119 (357)
+++++. .+++..+|.+. .+..-.++....+ .++.+.+++..+|+++. ++.|..+++.... ....+..+ ..|
T Consensus 7 l~~V~~~~~~~v~viD~~t-~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~---~v~~i~~G-~~~ 80 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGAT-NKVVARIPTGGAPHAGLKFSPDGRYLYVANR-DGTVSVIDLATGK---VVATIKVG-GNP 80 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT--SEEEEEE-STTEEEEEE-TT-SSEEEEEET-TSEEEEEETTSSS---EEEEEE-S-SEE
T ss_pred EEEEEecCCCEEEEEECCC-CeEEEEEcCCCCceeEEEecCCCCEEEEEcC-CCeEEEEECCccc---EEEEEecC-CCc
Confidence 344444 46789999866 3334444444454 45677887889999975 5799999998874 23334444 369
Q ss_pred eeEEEEcCCCeEEEEeCCCCEEEEEEcCCCce-EEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCC
Q psy13635 120 DGLAIDWLTEKLYWTDSETNKLEVSSLDGKKR-KVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTD 198 (357)
Q Consensus 120 ~glavd~~~~~ly~td~~~~~I~~~~~~g~~~-~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~ 198 (357)
.|+++.+.++.+|+++...+.+..++...... +.+-..+... ...-..+.+|.-.+.....+++-...+
T Consensus 81 ~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~----------~~~~~Rv~aIv~s~~~~~fVv~lkd~~ 150 (369)
T PF02239_consen 81 RGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPV----------DGPESRVAAIVASPGRPEFVVNLKDTG 150 (369)
T ss_dssp EEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-T----------TTS---EEEEEE-SSSSEEEEEETTTT
T ss_pred ceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccc----------cccCCCceeEEecCCCCEEEEEEccCC
Confidence 99999999999999999999999998765433 3332111100 000012335555555555556667778
Q ss_pred eEEEEEcCCC-ceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEE--------------------
Q psy13635 199 RIEVCRLEGT-HRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVL-------------------- 257 (357)
Q Consensus 199 ~I~~~~~~g~-~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~-------------------- 257 (357)
+|..++.... ....-.-..-..|.+..+||...+++.+....+ +|..++........
T Consensus 151 ~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn--~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~ 228 (369)
T PF02239_consen 151 EIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSN--KIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPG 228 (369)
T ss_dssp EEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGT--EEEEEETTTTEEEEEEE-SSSBEETTEEEEEETT
T ss_pred eEEEEEeccccccceeeecccccccccccCcccceeeecccccc--eeEEEeeccceEEEEeeccccccccccccccCCC
Confidence 9999986643 222111123467999999998667777644432 44444433211111
Q ss_pred ----------------EeeC------------------CCCCceEEEEecCCCEEEEE---eCCCCeEEEEeCCCCCeEE
Q psy13635 258 ----------------LVKD------------------RLGWPNGITLDVDNEKLYWC---DAKTDKIEMIDFDGNNRRE 300 (357)
Q Consensus 258 ----------------~~~~------------------~l~~P~giaid~~~~~lY~~---d~~~~~I~~~~~dG~~~~~ 300 (357)
.+.. ....|..+...|.+.+||+. ....+.|..+|...-....
T Consensus 229 ~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~ 308 (369)
T PF02239_consen 229 FGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVK 308 (369)
T ss_dssp TEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE
T ss_pred cceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeE
Confidence 1110 11345677788777777776 4567789999876653322
Q ss_pred EecC-CCCceEEEEEE--CCEEEEEeCCCC-eEEEEeCccCceeEEEecccCCceeeee
Q psy13635 301 LINE-NLPHVFGISLL--GDYVYWTDWQRR-SIDRVNKITGNDREVIIERSCTGVTRRR 355 (357)
Q Consensus 301 i~~~-~~~~p~gia~~--~~~ly~td~~~~-~I~~~~~~~g~~~~~i~~~l~~p~~i~~ 355 (357)
-+.. ....+..+.+. +.++|++.|..+ +|..+|..+.+....|. +..|.|+..
T Consensus 309 ~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~--~~tP~G~f~ 365 (369)
T PF02239_consen 309 TITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP--VPTPTGKFN 365 (369)
T ss_dssp -HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE----SEEEEEE
T ss_pred EEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE--eeCCCeEec
Confidence 2211 12236667775 589999999998 99999998999999998 889988753
|
... |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.1e-09 Score=97.28 Aligned_cols=225 Identities=19% Similarity=0.167 Sum_probs=143.2
Q ss_pred cCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEec-CCCCcceeeeeccCcccccCCceEEEeC---CCCeEE
Q psy13635 116 LITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWE-DIDQPRAIASYKLPTIEVEHPDGVAVDW---VARNLY 191 (357)
Q Consensus 116 ~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~-~~~~p~~i~~~~~~~~~~~~p~glavD~---~~~~lY 191 (357)
|++|.+|++.+. +.||+++. .++|.+++.+|.....+... ... ...-..+.|||+|+ .++.||
T Consensus 1 L~~P~~~a~~pd-G~l~v~e~-~G~i~~~~~~g~~~~~v~~~~~v~-----------~~~~~gllgia~~p~f~~n~~lY 67 (331)
T PF07995_consen 1 LNNPRSMAFLPD-GRLLVAER-SGRIWVVDKDGSLKTPVADLPEVF-----------ADGERGLLGIAFHPDFASNGYLY 67 (331)
T ss_dssp ESSEEEEEEETT-SCEEEEET-TTEEEEEETTTEECEEEEE-TTTB-----------TSTTBSEEEEEE-TTCCCC-EEE
T ss_pred CCCceEEEEeCC-CcEEEEeC-CceEEEEeCCCcCcceeccccccc-----------ccccCCcccceeccccCCCCEEE
Confidence 468999999975 89999998 89999999888763333221 110 23345778999998 468999
Q ss_pred EEeCCC--------CeEEEEEcCCC-----ceEEEec------CCCCCceEEEEeCCCCEEEEEeCCCC-----------
Q psy13635 192 WTDTGT--------DRIEVCRLEGT-----HRKVLVN------TDLVEPRAITLSPAHGYLFWSDWNEK----------- 241 (357)
Q Consensus 192 ~td~~~--------~~I~~~~~~g~-----~~~~~~~------~~~~~P~giavd~~~g~Ly~~d~~~~----------- 241 (357)
++-... .+|.+...+.. ..++++. .......+|+++|. |.||++--...
T Consensus 68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpD-G~LYvs~G~~~~~~~~~~~~~~ 146 (331)
T PF07995_consen 68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPD-GKLYVSVGDGGNDDNAQDPNSL 146 (331)
T ss_dssp EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TT-SEEEEEEB-TTTGGGGCSTTSS
T ss_pred EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCC-CcEEEEeCCCCCcccccccccc
Confidence 876632 37888777644 2223322 12345678999985 89999963221
Q ss_pred CCeEEEEecCCCc------------eEEEeeCCCCCceEEEEecCCCEEEEEeCCCC---eEEEEeCCCC----------
Q psy13635 242 RPKIERSLLNGGE------------RVLLVKDRLGWPNGITLDVDNEKLYWCDAKTD---KIEMIDFDGN---------- 296 (357)
Q Consensus 242 ~~~I~~~~~dg~~------------~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~---~I~~~~~dG~---------- 296 (357)
.++|.|++.+|+. ..+++..++.+|.++++|+..+.||.+|.+.. .|..+...+.
T Consensus 147 ~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~ 226 (331)
T PF07995_consen 147 RGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGP 226 (331)
T ss_dssp TTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSC
T ss_pred cceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCC
Confidence 5799999999862 33566789999999999987799999997653 4555543210
Q ss_pred ---Ce-------------EEEecCCCCceEEEEEE--------CCEEEEEeCCCCeEEEEeCccCce---eEEEecccC-
Q psy13635 297 ---NR-------------RELINENLPHVFGISLL--------GDYVYWTDWQRRSIDRVNKITGND---REVIIERSC- 348 (357)
Q Consensus 297 ---~~-------------~~i~~~~~~~p~gia~~--------~~~ly~td~~~~~I~~~~~~~g~~---~~~i~~~l~- 348 (357)
.. ..+....-..|.|+.+. .|.++++++..++|+++...++.. .+.+..+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 306 (331)
T PF07995_consen 227 KYSGPPIGDAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGG 306 (331)
T ss_dssp STTSS-ECTGSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS
T ss_pred CCCCCccccccCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCC
Confidence 00 00000122468899987 478999999999999998754432 333444444
Q ss_pred Cceeee
Q psy13635 349 TGVTRR 354 (357)
Q Consensus 349 ~p~~i~ 354 (357)
.|.+|.
T Consensus 307 r~~~v~ 312 (331)
T PF07995_consen 307 RPRDVA 312 (331)
T ss_dssp -EEEEE
T ss_pred CceEEE
Confidence 666765
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG1520|consensus | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.4e-09 Score=93.58 Aligned_cols=183 Identities=17% Similarity=0.220 Sum_probs=131.1
Q ss_pred CCEEEEEeCCCCeEEEEEcCCCCc-cee----EEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEe
Q psy13635 82 KSMVCWTDHGTEMISCCTFDGNNV-GSK----HNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYW 156 (357)
Q Consensus 82 ~~~ly~~d~~~~~I~~~~~~g~~~-~~~----~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~ 156 (357)
+..|+|+-...+-+.++...-+.. ... ......-+..|-||+++..++.||++|.-- -+..++..|...+.+..
T Consensus 75 g~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~VaDAYl-GL~~V~p~g~~a~~l~~ 153 (376)
T KOG1520|consen 75 GRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVADAYL-GLLKVGPEGGLAELLAD 153 (376)
T ss_pred CceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEEecce-eeEEECCCCCcceeccc
Confidence 455689887777776666521110 000 122233458899999999888999999753 47777888876555443
Q ss_pred cCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCC-----------------CeEEEEEcCCCceEEEecCCCC
Q psy13635 157 EDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGT-----------------DRIEVCRLEGTHRKVLVNTDLV 219 (357)
Q Consensus 157 ~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~-----------------~~I~~~~~~g~~~~~~~~~~~~ 219 (357)
.... ..+.-.+++.||+ +|.+||||+.. +|+.++|+..+..+++. .++.
T Consensus 154 ~~~G------------~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLl-d~L~ 219 (376)
T KOG1520|consen 154 EAEG------------KPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLL-DGLY 219 (376)
T ss_pred cccC------------eeeeecCceeEcC-CCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhh-hccc
Confidence 3222 2334678999997 99999999774 46677776666666665 4789
Q ss_pred CceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCce---EEEeeCCCCCceEEEEecCCCEEEEEe
Q psy13635 220 EPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGER---VLLVKDRLGWPNGITLDVDNEKLYWCD 282 (357)
Q Consensus 220 ~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~---~~~~~~~l~~P~giaid~~~~~lY~~d 282 (357)
.|+|++++|....+.+++... .+|.|.-+.|... +.++..--..|.-|..+ .+|..+++-
T Consensus 220 F~NGlaLS~d~sfvl~~Et~~--~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~-~~G~fWVal 282 (376)
T KOG1520|consen 220 FPNGLALSPDGSFVLVAETTT--ARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRD-STGHFWVAL 282 (376)
T ss_pred ccccccCCCCCCEEEEEeecc--ceeeeeEecCCccCchhhHhhcCCCCCcceeEC-CCCCEEEEE
Confidence 999999999999999999985 5999999988755 44443345689999998 778777765
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.5e-07 Score=83.13 Aligned_cols=251 Identities=13% Similarity=0.091 Sum_probs=164.4
Q ss_pred EEeecCCCCeEEEEEeCC----cEEEEEcCCC-CcceEec---cCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEc--CC
Q psy13635 33 YALSHHVAAQMLLFATSK----DIRIANLSRP-LKPVTII---KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTF--DG 102 (357)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~----~i~~~~~~~~-~~~~~~~---~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~--~g 102 (357)
..++.++.+..||..+.. .|..+..+.. ...+++- .....|.-+++|..+..+|.++...+.|....+ +|
T Consensus 43 tyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG 122 (346)
T COG2706 43 TYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADG 122 (346)
T ss_pred ceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCC
Confidence 334555555566666543 3544444331 3444443 233455889999999999999999998777666 44
Q ss_pred CCcceeEEEEeCCc--------CCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCccc
Q psy13635 103 NNVGSKHNVITNGL--------ITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIE 174 (357)
Q Consensus 103 ~~~~~~~~~~~~~~--------~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~ 174 (357)
.-......+...+. ..+...-++|.++.|+.+|-+..+|..++++-..........+ ..
T Consensus 123 ~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-------------~~ 189 (346)
T COG2706 123 SLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-------------KP 189 (346)
T ss_pred ccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc-------------CC
Confidence 43111112222221 1156677898899999999999999999987433322221111 12
Q ss_pred ccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCC--ceEEE-----ecC---CCCCceEEEEeCCCCEEEEEeCCCCCCe
Q psy13635 175 VEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGT--HRKVL-----VNT---DLVEPRAITLSPAHGYLFWSDWNEKRPK 244 (357)
Q Consensus 175 ~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~--~~~~~-----~~~---~~~~P~giavd~~~g~Ly~~d~~~~~~~ 244 (357)
..+|.-|++.+..+..|+...-+++|.+...++. ..+.+ +.+ +-..-..|.+++.+.+||.++.+-+.-.
T Consensus 190 G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~ 269 (346)
T COG2706 190 GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIA 269 (346)
T ss_pred CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence 2479999999999999999999999998887763 22221 111 2335568899999899999999854224
Q ss_pred EEEEecCCCceEEE--eeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCC
Q psy13635 245 IERSLLNGGERVLL--VKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGN 296 (357)
Q Consensus 245 I~~~~~dg~~~~~~--~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~ 296 (357)
+++++.+|+....+ .......|.++.+++.++.|+++...++.|.++..|..
T Consensus 270 ~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 270 VFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred EEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 44555555544333 23456679999999999999999998888877776653
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.6e-07 Score=85.47 Aligned_cols=250 Identities=14% Similarity=0.090 Sum_probs=147.4
Q ss_pred cCCEEEEEeCC----CCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeC---------CCCEEEEEEcC
Q psy13635 81 KKSMVCWTDHG----TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDS---------ETNKLEVSSLD 147 (357)
Q Consensus 81 ~~~~ly~~d~~----~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~---------~~~~I~~~~~~ 147 (357)
...++|++|.. .+.|+.++.+... ....+..+ ..|.++ +.+.++.||++.+ ..+.|.+++..
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~---v~g~i~~G-~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGR---VLGMTDGG-FLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCE---EEEEEEcc-CCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence 35778888887 3788888887763 23444444 479996 9999999999999 88999999986
Q ss_pred CCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC-CCeEEEEEcCCCceEEEecCCCCCceEEEE
Q psy13635 148 GKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG-TDRIEVCRLEGTHRKVLVNTDLVEPRAITL 226 (357)
Q Consensus 148 g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~-~~~I~~~~~~g~~~~~~~~~~~~~P~giav 226 (357)
......-+..+ .+|++.+ ...|..+++.+.++.||+++.. .+.+.++|+.......-+... ..+.....
T Consensus 86 t~~~~~~i~~p-~~p~~~~--------~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~~~vy~t 155 (352)
T TIGR02658 86 THLPIADIELP-EGPRFLV--------GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP-DCYHIFPT 155 (352)
T ss_pred cCcEEeEEccC-CCchhhc--------cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC-CCcEEEEe
Confidence 54432222222 3334322 2478899999999999999977 789999998865543322211 11222222
Q ss_pred eCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCC---------CCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCC
Q psy13635 227 SPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDR---------LGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNN 297 (357)
Q Consensus 227 d~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~---------l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~ 297 (357)
.+.+..+.+.| ++...+.++..+........ +.+| .+.+.+++.+|.... +.|+.+++.+..
T Consensus 156 ~e~~~~~~~~D-----g~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e-G~V~~id~~~~~ 226 (352)
T TIGR02658 156 ANDTFFMHCRD-----GSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYT-GKIFQIDLSSGD 226 (352)
T ss_pred cCCccEEEeec-----CceEEEEecCCCceEEeeeeeecCCccccccCC---ceEcCCCcEEEEecC-CeEEEEecCCCc
Confidence 22211222222 23333333222111111111 2456 223334555555544 899999986653
Q ss_pred eEEE-----ecCC----CCceEE---EEEE--CCEEEEEe-C--------CCCeEEEEeCccCceeEEEecccCCceeee
Q psy13635 298 RREL-----INEN----LPHVFG---ISLL--GDYVYWTD-W--------QRRSIDRVNKITGNDREVIIERSCTGVTRR 354 (357)
Q Consensus 298 ~~~i-----~~~~----~~~p~g---ia~~--~~~ly~td-~--------~~~~I~~~~~~~g~~~~~i~~~l~~p~~i~ 354 (357)
.... +... .-.|.| +++. ++++|++. . ..+.|..+|..+++....|..+ ..|.+|.
T Consensus 227 ~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~~~~~ia 305 (352)
T TIGR02658 227 AKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG-HEIDSIN 305 (352)
T ss_pred ceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC-CceeeEE
Confidence 3211 1111 113444 6665 68999953 2 2268999999888888887765 4666665
Q ss_pred e
Q psy13635 355 R 355 (357)
Q Consensus 355 ~ 355 (357)
.
T Consensus 306 v 306 (352)
T TIGR02658 306 V 306 (352)
T ss_pred E
Confidence 3
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.1e-07 Score=88.68 Aligned_cols=252 Identities=13% Similarity=0.090 Sum_probs=160.3
Q ss_pred cceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeE----EEEe-CCcCCceeEEEEcC------CCe
Q psy13635 62 KPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKH----NVIT-NGLITPDGLAIDWL------TEK 130 (357)
Q Consensus 62 ~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~----~~~~-~~~~~p~glavd~~------~~~ 130 (357)
+.+.+...+..|++|++.+ ++++|+++...++|++++.++... ... .+.. .+...+.|||++|. ++.
T Consensus 21 ~~~~va~GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~-~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~ 98 (454)
T TIGR03606 21 DKKVLLSGLNKPWALLWGP-DNQLWVTERATGKILRVNPETGEV-KVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPY 98 (454)
T ss_pred EEEEEECCCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCce-eeeecCCceeccCCCCceeeEEECCCccccCCCcE
Confidence 4556778899999999988 579999998778999998765431 011 1222 24567899999854 467
Q ss_pred EEEEeC---------CCCEEEEEEcCCC-----ceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC
Q psy13635 131 LYWTDS---------ETNKLEVSSLDGK-----KRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG 196 (357)
Q Consensus 131 ly~td~---------~~~~I~~~~~~g~-----~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~ 196 (357)
||++-+ ...+|.|+.++.. ..+.++.. +|....+.-..|++++ .|+||++-..
T Consensus 99 lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~------------lP~~~~H~GgrI~FgP-DG~LYVs~GD 165 (454)
T TIGR03606 99 VYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAG------------LPAGNDHNGGRLVFGP-DGKIYYTIGE 165 (454)
T ss_pred EEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEec------------CCCCCCcCCceEEECC-CCcEEEEECC
Confidence 898742 2468988887532 12233221 1233345566788986 5689996322
Q ss_pred C--------------------------------CeEEEEEcCCCc----------eEEEecCCCCCceEEEEeCCCCEEE
Q psy13635 197 T--------------------------------DRIEVCRLEGTH----------RKVLVNTDLVEPRAITLSPAHGYLF 234 (357)
Q Consensus 197 ~--------------------------------~~I~~~~~~g~~----------~~~~~~~~~~~P~giavd~~~g~Ly 234 (357)
. ++|.|++.||+. +..+..-++.+|.|+++|| +|.||
T Consensus 166 ~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp-~G~Lw 244 (454)
T TIGR03606 166 QGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTP-DGTLY 244 (454)
T ss_pred CCCCCcccccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECC-CCCEE
Confidence 1 279999999863 2234455789999999999 69999
Q ss_pred EEeCCCC-CCeEEEEec-----------------------CCCc----------------------------e-EEEee-
Q psy13635 235 WSDWNEK-RPKIERSLL-----------------------NGGE----------------------------R-VLLVK- 260 (357)
Q Consensus 235 ~~d~~~~-~~~I~~~~~-----------------------dg~~----------------------------~-~~~~~- 260 (357)
.+|.+.. .-.|.++.. .+.. . ..+..
T Consensus 245 ~~e~Gp~~~DEiN~I~~G~NYGWP~~~G~~~~~~~~~~~ys~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~P~~~~ 324 (454)
T TIGR03606 245 ASEQGPNSDDELNIIVKGGNYGWPNVAGYKDDSGYVYANYSAAANKSIKTLAQNGIPAGVPVTKESEWTAKNFVPPLKTL 324 (454)
T ss_pred EEecCCCCCcEEEEeccCCcCCCCceeecCccccccccccccccccccccccccccCcCccccccccccCccccCCceec
Confidence 9997753 112222221 1000 0 00000
Q ss_pred ---------------------CCCCCceEEEEecC--------CCEEEEEeCCCCeEEEEeCCCCC--e----EEEecCC
Q psy13635 261 ---------------------DRLGWPNGITLDVD--------NEKLYWCDAKTDKIEMIDFDGNN--R----RELINEN 305 (357)
Q Consensus 261 ---------------------~~l~~P~giaid~~--------~~~lY~~d~~~~~I~~~~~dG~~--~----~~i~~~~ 305 (357)
...-.|.|+++-.. .+.|+++--....+.++.+++.. . +.++. .
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~psiapsg~~~y~~~g~~~p~w~g~llv~~L~~~~l~r~~l~~~~~~v~~~~~~~~~-~ 403 (454)
T TIGR03606 325 YTVQDTYNYNDATCGEMTYICWPTIAPSSAYYYKGGEKGITGWENSLLIPSLKRGVIYRIKLDPDYSTVYGDAVPMFK-T 403 (454)
T ss_pred cccccccccccccccccccccCCCcCCceeEEEecCcccCcccCCCEEEEEcCCCeEEEEEecCCcceecceeEEeec-C
Confidence 01113789998421 36899999999999999997763 1 22333 2
Q ss_pred CCceEEEEEE-C-CEEEEEeCCCCeEE
Q psy13635 306 LPHVFGISLL-G-DYVYWTDWQRRSID 330 (357)
Q Consensus 306 ~~~p~gia~~-~-~~ly~td~~~~~I~ 330 (357)
......++.. + +.||++-...+.+.
T Consensus 404 ~~RiRdv~~~pDg~~iy~~td~~g~~~ 430 (454)
T TIGR03606 404 NNRYRDVIASPDGNVLYVATDNFGNVQ 430 (454)
T ss_pred CCeeEEEEECCCCCEEEEEEcCCCccc
Confidence 5577888886 3 48999655667653
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.2e-05 Score=69.36 Aligned_cols=268 Identities=11% Similarity=0.051 Sum_probs=156.8
Q ss_pred cCCCCeEEEEEe-CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCC
Q psy13635 37 HHVAAQMLLFAT-SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNG 115 (357)
Q Consensus 37 ~~~~~~~l~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 115 (357)
-++...+++.+. ...+...++..................+.+.+.++.|+.+. .++.|+..++.... ........
T Consensus 17 ~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~~i~i~~~~~~~---~~~~~~~~ 92 (289)
T cd00200 17 FSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGS-SDKTIRLWDLETGE---CVRTLTGH 92 (289)
T ss_pred EcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEc-CCCeEEEEEcCccc---ceEEEecc
Confidence 344445666665 55677888866432233323333344888887665555544 46788888887643 12233333
Q ss_pred cCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeC
Q psy13635 116 LITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDT 195 (357)
Q Consensus 116 ~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~ 195 (357)
...+..+++++. +.++++....+.|...++........... ....+..+++++.+. ++++..
T Consensus 93 ~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----------------~~~~i~~~~~~~~~~-~l~~~~ 154 (289)
T cd00200 93 TSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRG----------------HTDWVNSVAFSPDGT-FVASSS 154 (289)
T ss_pred CCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEecc----------------CCCcEEEEEEcCcCC-EEEEEc
Confidence 345778888864 56777776678999998873332222211 112467788886644 444444
Q ss_pred CCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCC
Q psy13635 196 GTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDN 275 (357)
Q Consensus 196 ~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~ 275 (357)
..+.|...+...................+++++.+..++.+... +.|...++...............+..+++++.
T Consensus 155 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~---~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~- 230 (289)
T cd00200 155 QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD---GTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD- 230 (289)
T ss_pred CCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCC---CcEEEEECCCCceecchhhcCCceEEEEEcCC-
Confidence 45678888887433322222333467889999875577776653 57888887754333333222335688898854
Q ss_pred CEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEEC-CEEEEEeCCCCeEE
Q psy13635 276 EKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLG-DYVYWTDWQRRSID 330 (357)
Q Consensus 276 ~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~~-~~ly~td~~~~~I~ 330 (357)
+.++++....+.|...+.+.......+......+..+++.. +..+++-...+.|.
T Consensus 231 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 231 GYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIR 286 (289)
T ss_pred CcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEE
Confidence 67777766678899888864333233333333566777764 34444444445544
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.5e-06 Score=82.67 Aligned_cols=228 Identities=13% Similarity=0.085 Sum_probs=143.9
Q ss_pred eEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCC--CCEEEEEEcCCCceEEEEecCCCCcceeeeeccC
Q psy13635 94 MISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSE--TNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLP 171 (357)
Q Consensus 94 ~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~--~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~ 171 (357)
.|+.++.+|.. ...+..+-......++.+.++.|+|+... ..+|++.++++...+.+....
T Consensus 199 ~l~i~d~dG~~----~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~------------- 261 (448)
T PRK04792 199 QLMIADYDGYN----EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP------------- 261 (448)
T ss_pred EEEEEeCCCCC----ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC-------------
Confidence 56677788875 33344333344567888888889887543 457999998876654442110
Q ss_pred cccccCCceEEEeCCCCeEEEEeCCC--CeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEe
Q psy13635 172 TIEVEHPDGVAVDWVARNLYWTDTGT--DRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSL 249 (357)
Q Consensus 172 ~~~~~~p~glavD~~~~~lY~td~~~--~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~ 249 (357)
......++.+.+..|+++.... ..|+.+++++...+.+... .......+++|++..|+++........|++++
T Consensus 262 ----g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~-~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~d 336 (448)
T PRK04792 262 ----GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRH-RAIDTEPSWHPDGKSLIFTSERGGKPQIYRVN 336 (448)
T ss_pred ----CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccC-CCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence 0112456777788887764333 3699999987766555432 23445677888877887775433236899999
Q ss_pred cCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCC--CeEEEEeCCCCCeEEEecCCCC-ceEEEEEECCEEEEEeCCC
Q psy13635 250 LNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKT--DKIEMIDFDGNNRRELINENLP-HVFGISLLGDYVYWTDWQR 326 (357)
Q Consensus 250 ~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~--~~I~~~~~dG~~~~~i~~~~~~-~p~gia~~~~~ly~td~~~ 326 (357)
+++...+.+...+ ....+.++.+++..||++.... ..|+.+++++...+.+...... .| ..+.++..|+++....
T Consensus 337 l~~g~~~~Lt~~g-~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~p-s~spdG~~I~~~~~~~ 414 (448)
T PRK04792 337 LASGKVSRLTFEG-EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESP-SVAPNGTMVIYSTTYQ 414 (448)
T ss_pred CCCCCEEEEecCC-CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCc-eECCCCCEEEEEEecC
Confidence 9877665553222 2233457787888998876543 3788889888766544332222 23 4555677887766544
Q ss_pred C--eEEEEeCccCceeEEEecc
Q psy13635 327 R--SIDRVNKITGNDREVIIER 346 (357)
Q Consensus 327 ~--~I~~~~~~~g~~~~~i~~~ 346 (357)
+ .++.++. +|+....+..+
T Consensus 415 g~~~l~~~~~-~G~~~~~l~~~ 435 (448)
T PRK04792 415 GKQVLAAVSI-DGRFKARLPAG 435 (448)
T ss_pred CceEEEEEEC-CCCceEECcCC
Confidence 3 3777887 78877776543
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-06 Score=79.88 Aligned_cols=190 Identities=24% Similarity=0.262 Sum_probs=122.9
Q ss_pred CceeEEEEcCCCeEEEEeCCC------------CEEEEEEcCCCce-EE-EEecCCCCcceeeeeccCcccccCCceEEE
Q psy13635 118 TPDGLAIDWLTEKLYWTDSET------------NKLEVSSLDGKKR-KV-LYWEDIDQPRAIASYKLPTIEVEHPDGVAV 183 (357)
Q Consensus 118 ~p~glavd~~~~~ly~td~~~------------~~I~~~~~~g~~~-~~-~~~~~~~~p~~i~~~~~~~~~~~~p~glav 183 (357)
++.++.+| ..++||+.|.+. -+|..+++..... ++ .++..... .-...+.++|
T Consensus 2 sV~~v~iD-~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~------------~~s~lndl~V 68 (287)
T PF03022_consen 2 SVQRVQID-ECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAP------------PDSFLNDLVV 68 (287)
T ss_dssp -EEEEEE--TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-------------TCGGEEEEEE
T ss_pred cccEEEEc-CCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcc------------cccccceEEE
Confidence 45678899 588899999753 3788888865543 22 22222221 1235678999
Q ss_pred eCCC-----CeEEEEeCCCCeEEEEEcCC-CceEEEecCC------------------CCCceEEEEeC---CCCEEEEE
Q psy13635 184 DWVA-----RNLYWTDTGTDRIEVCRLEG-THRKVLVNTD------------------LVEPRAITLSP---AHGYLFWS 236 (357)
Q Consensus 184 D~~~-----~~lY~td~~~~~I~~~~~~g-~~~~~~~~~~------------------~~~P~giavd~---~~g~Ly~~ 236 (357)
|... +..|++|.+...|.++++.. +..+++.... .....|++++| .++.|||.
T Consensus 69 D~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~ 148 (287)
T PF03022_consen 69 DVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFH 148 (287)
T ss_dssp ECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEE
T ss_pred EccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEE
Confidence 9754 48999999988999999875 3333332211 12356888876 44689999
Q ss_pred eCCCCCCeEEEEecC----CC---------ceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCC----CCeE
Q psy13635 237 DWNEKRPKIERSLLN----GG---------ERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDG----NNRR 299 (357)
Q Consensus 237 d~~~~~~~I~~~~~d----g~---------~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG----~~~~ 299 (357)
--.+ .+++++..+ .+ ..+.+. .......|+++| .+|.||+++...+.|.+.+.++ .+..
T Consensus 149 ~lss--~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG-~k~~~s~g~~~D-~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~ 224 (287)
T PF03022_consen 149 PLSS--RKLYRVPTSVLRDPSLSDAQALASQVQDLG-DKGSQSDGMAID-PNGNLYFTDVEQNAIGCWDPDGPYTPENFE 224 (287)
T ss_dssp ETT---SEEEEEEHHHHCSTT--HHH-HHHT-EEEE-E---SECEEEEE-TTTEEEEEECCCTEEEEEETTTSB-GCCEE
T ss_pred eCCC--CcEEEEEHHHhhCccccccccccccceecc-ccCCCCceEEEC-CCCcEEEecCCCCeEEEEeCCCCcCccchh
Confidence 9774 489988853 11 112222 222466899999 5999999999999999999998 3444
Q ss_pred EEec-CC-CCceEEEEEEC---CEEEEEeC
Q psy13635 300 ELIN-EN-LPHVFGISLLG---DYVYWTDW 324 (357)
Q Consensus 300 ~i~~-~~-~~~p~gia~~~---~~ly~td~ 324 (357)
.++. .. +..|.++++++ |.||+...
T Consensus 225 ~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 225 ILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp EEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred eeEEcCceeeccceeeeccccCceEEEEEC
Confidence 4544 33 78999999998 99999863
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=3e-06 Score=82.13 Aligned_cols=226 Identities=12% Similarity=0.075 Sum_probs=142.9
Q ss_pred cEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCC--CeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCC
Q psy13635 51 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGT--EMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 128 (357)
Q Consensus 51 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~--~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~ 128 (357)
+|+.+|.+|. ....+...........++|++++|+|+...+ ..|+..++++.. ...+...-......++.+.+
T Consensus 199 ~l~i~d~dG~-~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~----~~~lt~~~g~~~~~~wSPDG 273 (448)
T PRK04792 199 QLMIADYDGY-NEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV----REKVTSFPGINGAPRFSPDG 273 (448)
T ss_pred EEEEEeCCCC-CceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC----eEEecCCCCCcCCeeECCCC
Confidence 5777888773 3344444444556678999999998875433 469999998764 33333221223457888888
Q ss_pred CeEEEEeCC--CCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC--CCeEEEEE
Q psy13635 129 EKLYWTDSE--TNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG--TDRIEVCR 204 (357)
Q Consensus 129 ~~ly~td~~--~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~--~~~I~~~~ 204 (357)
+.|+++... ...|+++++++...+.+.... ......++.+.++.|+++... ...|++++
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~-----------------~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~d 336 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKALTRITRHR-----------------AIDTEPSWHPDGKSLIFTSERGGKPQIYRVN 336 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCCeEECccCC-----------------CCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence 889886433 346999998877655443211 123345666677788776543 34789999
Q ss_pred cCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCC
Q psy13635 205 LEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAK 284 (357)
Q Consensus 205 ~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~ 284 (357)
+++...+.+.... ....+.+++|.+..||++........|+..++++...+.+...... ...++.+.+..|+++...
T Consensus 337 l~~g~~~~Lt~~g-~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d--~~ps~spdG~~I~~~~~~ 413 (448)
T PRK04792 337 LASGKVSRLTFEG-EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLD--ESPSVAPNGTMVIYSTTY 413 (448)
T ss_pred CCCCCEEEEecCC-CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCC--CCceECCCCCEEEEEEec
Confidence 8866555443222 2234568898888898886643335899999988776555432221 122566778888876643
Q ss_pred C--CeEEEEeCCCCCeEEE
Q psy13635 285 T--DKIEMIDFDGNNRREL 301 (357)
Q Consensus 285 ~--~~I~~~~~dG~~~~~i 301 (357)
. ..++.++.+|...+.+
T Consensus 414 ~g~~~l~~~~~~G~~~~~l 432 (448)
T PRK04792 414 QGKQVLAAVSIDGRFKARL 432 (448)
T ss_pred CCceEEEEEECCCCceEEC
Confidence 3 3588888888876655
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-05 Score=76.05 Aligned_cols=259 Identities=14% Similarity=0.083 Sum_probs=138.6
Q ss_pred EEEeecCCCCeEEEEEeC-CcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEE
Q psy13635 32 WYALSHHVAAQMLLFATS-KDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHN 110 (357)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~ 110 (357)
+.....+++..++|.+++ ..|.++|+.. .+....+.....|.++++++++..+|.++...+.+..++....+.. ..
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~-~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v--~~ 115 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLAT-GKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPV--KT 115 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTS-SSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EE--EE
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCc-ccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccce--ee
Confidence 333445666778888885 4689999977 3444455667789999999999999999999999999888776421 22
Q ss_pred EEeCCc------CCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCc-eEE-EEecCCCCcceeeeeccCcccccCCceEE
Q psy13635 111 VITNGL------ITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKK-RKV-LYWEDIDQPRAIASYKLPTIEVEHPDGVA 182 (357)
Q Consensus 111 ~~~~~~------~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~-~~~-~~~~~~~~p~~i~~~~~~~~~~~~p~gla 182 (357)
+-..+. ..+.+|...+......++-...++|..++..... ... .+..+ ..|.+..
T Consensus 116 I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g-----------------~~~~D~~ 178 (369)
T PF02239_consen 116 IPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVG-----------------RFPHDGG 178 (369)
T ss_dssp EE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE-------------------TTEEEEE
T ss_pred cccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccc-----------------ccccccc
Confidence 222111 1234555555444455566788999999875532 221 21111 3688899
Q ss_pred EeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCC---------------------------------------------
Q psy13635 183 VDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTD--------------------------------------------- 217 (357)
Q Consensus 183 vD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~--------------------------------------------- 217 (357)
+|+.+++++.+....+.|.+++.........+..+
T Consensus 179 ~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~ 258 (369)
T PF02239_consen 179 FDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYA 258 (369)
T ss_dssp E-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTB
T ss_pred cCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhc
Confidence 99888888887666667766665543332222110
Q ss_pred ---------CCCceEEEEeCCCCEEEEEeCCCC-CCeEEEEecCCCceEEEeeC-CCCCceEEEEecCCCEEEEEeCCCC
Q psy13635 218 ---------LVEPRAITLSPAHGYLFWSDWNEK-RPKIERSLLNGGERVLLVKD-RLGWPNGITLDVDNEKLYWCDAKTD 286 (357)
Q Consensus 218 ---------~~~P~giavd~~~g~Ly~~d~~~~-~~~I~~~~~dg~~~~~~~~~-~l~~P~giaid~~~~~lY~~d~~~~ 286 (357)
...|..+..+|...+||+...... ...|..++...-....-+.. .-..+..+.++..+..+|++.+..+
T Consensus 259 wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~ 338 (369)
T PF02239_consen 259 WKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGN 338 (369)
T ss_dssp TSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--T
T ss_pred CeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCC
Confidence 113344555555555555411110 24555555554322111111 1123667777777777777777766
Q ss_pred -eEEEEeCCCCCeEEEecCCCCceEEE
Q psy13635 287 -KIEMIDFDGNNRRELINENLPHVFGI 312 (357)
Q Consensus 287 -~I~~~~~dG~~~~~i~~~~~~~p~gi 312 (357)
.|..+|...-.....+. +..|.|+
T Consensus 339 ~~i~v~D~~Tl~~~~~i~--~~tP~G~ 363 (369)
T PF02239_consen 339 GAIVVYDAKTLKEKKRIP--VPTPTGK 363 (369)
T ss_dssp TEEEEEETTTTEEEEEEE----SEEEE
T ss_pred CEEEEEECCCcEEEEEEE--eeCCCeE
Confidence 77777765544433333 6677765
|
... |
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.7e-07 Score=76.90 Aligned_cols=205 Identities=19% Similarity=0.257 Sum_probs=119.6
Q ss_pred eeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCc-ceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCC
Q psy13635 120 DGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQP-RAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTD 198 (357)
Q Consensus 120 ~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p-~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~ 198 (357)
+|+..|..++.|||.|...+.|.|.+.........--.+ .| .+.++ |. ...|.+.++- .+.
T Consensus 18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~--p~~ag~il---pv--~~~~q~~~v~-~G~---------- 79 (310)
T KOG4499|consen 18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEG--PPSAGFIL---PV--EGGPQEFAVG-CGS---------- 79 (310)
T ss_pred CCCceEEecceEEEEEeccCceehhhhhhhheEEEEEec--CcceeEEE---Ee--cCCCceEEEe-ecc----------
Confidence 778888889999999998888888665543332211110 00 01110 11 1234444433 222
Q ss_pred eEEEEEcCCCceEEE-ecCC--------CCCceEEEEeCCCCEEEEEeCCCC------CCeEEEEecCCCceEEEeeCCC
Q psy13635 199 RIEVCRLEGTHRKVL-VNTD--------LVEPRAITLSPAHGYLFWSDWNEK------RPKIERSLLNGGERVLLVKDRL 263 (357)
Q Consensus 199 ~I~~~~~~g~~~~~~-~~~~--------~~~P~giavd~~~g~Ly~~d~~~~------~~~I~~~~~dg~~~~~~~~~~l 263 (357)
+....+.||...... ..+. -.+-+.=-+||. |+-|.-..... .+...+..+-|.....+ -..+
T Consensus 80 kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~-Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i-~~~v 157 (310)
T KOG4499|consen 80 KFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPD-GRYYGGTMADFGDDLEPIGGELYSWLAGHQVELI-WNCV 157 (310)
T ss_pred eEEEEEcccccceeeeeeeccccCchHHhcccccCccCCC-CceeeeeeccccccccccccEEEEeccCCCceee-ehhc
Confidence 333344444322111 1110 112334446664 55554332211 11222333333333333 3567
Q ss_pred CCceEEEEecCCCEEEEEeCCCCeEEEEeCC--C---CCeEEEec------CCCCceEEEEEE-CCEEEEEeCCCCeEEE
Q psy13635 264 GWPNGITLDVDNEKLYWCDAKTDKIEMIDFD--G---NNRRELIN------ENLPHVFGISLL-GDYVYWTDWQRRSIDR 331 (357)
Q Consensus 264 ~~P~giaid~~~~~lY~~d~~~~~I~~~~~d--G---~~~~~i~~------~~~~~p~gia~~-~~~ly~td~~~~~I~~ 331 (357)
.-|+||+.|......|+.|+.+..|...+.| + ++++.+.. ..-..|.|+++| +|+||++-+..++|++
T Consensus 158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~ 237 (310)
T KOG4499|consen 158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQK 237 (310)
T ss_pred cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEE
Confidence 7899999998889999999999999777643 2 34544432 123468999999 7999999999999999
Q ss_pred EeCccCceeEEEe
Q psy13635 332 VNKITGNDREVII 344 (357)
Q Consensus 332 ~~~~~g~~~~~i~ 344 (357)
+++.+|+.+..+.
T Consensus 238 ~dp~tGK~L~eik 250 (310)
T KOG4499|consen 238 VDPTTGKILLEIK 250 (310)
T ss_pred ECCCCCcEEEEEE
Confidence 9999999877663
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.8e-06 Score=76.07 Aligned_cols=198 Identities=11% Similarity=0.101 Sum_probs=136.8
Q ss_pred CCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEE-EEeC
Q psy13635 117 ITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLY-WTDT 195 (357)
Q Consensus 117 ~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY-~td~ 195 (357)
.+..++++++.++.||.+-...-.|..++.+|...+++.. ..+..|++|+.= +++.| ++|.
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL----------------~g~~DpE~Ieyi--g~n~fvi~dE 147 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPL----------------TGFSDPETIEYI--GGNQFVIVDE 147 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecc----------------cccCChhHeEEe--cCCEEEEEeh
Confidence 3478999999999999988777899999999998888754 445566666654 44444 4566
Q ss_pred CCCeEEEEEcCC--CceEE----EecCC----CCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeC----
Q psy13635 196 GTDRIEVCRLEG--THRKV----LVNTD----LVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKD---- 261 (357)
Q Consensus 196 ~~~~I~~~~~~g--~~~~~----~~~~~----~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~---- 261 (357)
...++..+..+- ..... +-.+. -..-.|+|-|+.++++|++-.... ..|+.++..-.....-...
T Consensus 148 R~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P-~~I~~~~~~~~~l~~~~~~~~~~ 226 (316)
T COG3204 148 RDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNP-IGIFEVTQSPSSLSVHASLDPTA 226 (316)
T ss_pred hcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCC-cEEEEEecCCcccccccccCccc
Confidence 666666555442 21111 10011 123469999999999999998865 6888887443222111110
Q ss_pred ----CCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEec--------CCCCceEEEEEE-CCEEEEEeCCCCe
Q psy13635 262 ----RLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELIN--------ENLPHVFGISLL-GDYVYWTDWQRRS 328 (357)
Q Consensus 262 ----~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~--------~~~~~p~gia~~-~~~ly~td~~~~~ 328 (357)
-+..-.|+.+|+..+.|++-...++.+..++.+|.-+..+.- ..++++.||+.| +|.||++. ..+.
T Consensus 227 ~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvS-EPnl 305 (316)
T COG3204 227 DRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVS-EPNL 305 (316)
T ss_pred ccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEe-cCCc
Confidence 123456899999999999998889999999999976443321 247789999998 59999986 4456
Q ss_pred EEEEeC
Q psy13635 329 IDRVNK 334 (357)
Q Consensus 329 I~~~~~ 334 (357)
-+++.+
T Consensus 306 fy~F~~ 311 (316)
T COG3204 306 FYRFTP 311 (316)
T ss_pred ceeccc
Confidence 777766
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.9e-06 Score=75.22 Aligned_cols=225 Identities=12% Similarity=0.132 Sum_probs=147.0
Q ss_pred EEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcC-----CCceEEEEecCCCCcceeeeeccCcccccCCceEEEeC
Q psy13635 111 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD-----GKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDW 185 (357)
Q Consensus 111 ~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~-----g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~ 185 (357)
.....+.+|.||++.+ ++.++++|.+++....++.+ |.....++..... -+ ...-..|.|+++..
T Consensus 17 ~tDp~L~N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~--~~-------~~~~~~PTGiVfN~ 86 (336)
T TIGR03118 17 IVDPGLRNAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAP--PP-------LAAEGTPTGQVFNG 86 (336)
T ss_pred ccCccccccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCC--CC-------CCCCCCccEEEEeC
Confidence 4456788999999997 67899999988888888776 4333222221100 00 01123577777763
Q ss_pred CCC-------------eEEEEeCCCCeEEEEEcC--CC---ceEEEecC--CCCCceEEEEeCC--CCEEEEEeCCCCCC
Q psy13635 186 VAR-------------NLYWTDTGTDRIEVCRLE--GT---HRKVLVNT--DLVEPRAITLSPA--HGYLFWSDWNEKRP 243 (357)
Q Consensus 186 ~~~-------------~lY~td~~~~~I~~~~~~--g~---~~~~~~~~--~~~~P~giavd~~--~g~Ly~~d~~~~~~ 243 (357)
..+ .||.++. ++|.--++. -. ...+++.. ....=.|+|+... ..+||-+|.. ++
T Consensus 87 ~~~F~vt~~g~~~~a~Fif~tEd--GTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~--~g 162 (336)
T TIGR03118 87 SDTFVVSGEGITGPSRFLFVTED--GTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFR--QG 162 (336)
T ss_pred CCceEEcCCCcccceeEEEEeCC--ceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccC--CC
Confidence 332 2343333 345444432 11 11122221 1234568888754 5699999998 46
Q ss_pred eEEEEecCCCceEEEeeC--------CCCCceEEEEecCCCEEEEEe-------------CCCCeEEEEeCCCCCeEEEe
Q psy13635 244 KIERSLLNGGERVLLVKD--------RLGWPNGITLDVDNEKLYWCD-------------AKTDKIEMIDFDGNNRRELI 302 (357)
Q Consensus 244 ~I~~~~~dg~~~~~~~~~--------~l~~P~giaid~~~~~lY~~d-------------~~~~~I~~~~~dG~~~~~i~ 302 (357)
+|.+.+-.-.. ..+.. .-..|.+|.- .+++|||+= .+.+.|-.++++|...+++.
T Consensus 163 ~IDVFd~~f~~--~~~~g~F~DP~iPagyAPFnIqn--ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~a 238 (336)
T TIGR03118 163 RIDVFKGSFRP--PPLPGSFIDPALPAGYAPFNVQN--LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVA 238 (336)
T ss_pred ceEEecCcccc--ccCCCCccCCCCCCCCCCcceEE--ECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEec
Confidence 99888543221 11111 1245788876 589999974 34568999999999988886
Q ss_pred cC-CCCceEEEEEE-------CCEEEEEeCCCCeEEEEeCccCceeEEEecccCCceee
Q psy13635 303 NE-NLPHVFGISLL-------GDYVYWTDWQRRSIDRVNKITGNDREVIIERSCTGVTR 353 (357)
Q Consensus 303 ~~-~~~~p~gia~~-------~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~i 353 (357)
.. .+..|.||++. .+.|.+-+.+.++|..+|..+|+..-.+...-++|.-|
T Consensus 239 s~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i 297 (336)
T TIGR03118 239 SSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKV 297 (336)
T ss_pred cCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEe
Confidence 54 58899999982 48899999999999999998899888888877777655
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.3e-07 Score=84.71 Aligned_cols=172 Identities=17% Similarity=0.219 Sum_probs=117.4
Q ss_pred EEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCC--
Q psy13635 109 HNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWV-- 186 (357)
Q Consensus 109 ~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~-- 186 (357)
.+++..++..|.+|++.+ .+.+|+++...++|.+++.++...+.+.. +.. +. .......+.|||++|.
T Consensus 22 ~~~va~GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~--l~~---v~----~~~ge~GLlglal~PdF~ 91 (454)
T TIGR03606 22 KKVLLSGLNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFT--LPE---IV----NDAQHNGLLGLALHPDFM 91 (454)
T ss_pred EEEEECCCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeec--CCc---ee----ccCCCCceeeEEECCCcc
Confidence 567788999999999997 67899999878999999876544332211 000 00 0112457889999844
Q ss_pred ----CCeEEEEeC---------CCCeEEEEEcCCC-----ceEEEecC----CCCCceEEEEeCCCCEEEEEeCCC----
Q psy13635 187 ----ARNLYWTDT---------GTDRIEVCRLEGT-----HRKVLVNT----DLVEPRAITLSPAHGYLFWSDWNE---- 240 (357)
Q Consensus 187 ----~~~lY~td~---------~~~~I~~~~~~g~-----~~~~~~~~----~~~~P~giavd~~~g~Ly~~d~~~---- 240 (357)
++.||++-. ...+|.|+.++.. ..++++.. ....-..|+++|+ |.||++--..
T Consensus 92 ~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPD-G~LYVs~GD~g~~~ 170 (454)
T TIGR03606 92 QEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPD-GKIYYTIGEQGRNQ 170 (454)
T ss_pred ccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCC-CcEEEEECCCCCCC
Confidence 578999852 1457888877532 12333321 1233567999985 8999974332
Q ss_pred --------------------------CCCeEEEEecCCCc----------eEEEeeCCCCCceEEEEecCCCEEEEEeCC
Q psy13635 241 --------------------------KRPKIERSLLNGGE----------RVLLVKDRLGWPNGITLDVDNEKLYWCDAK 284 (357)
Q Consensus 241 --------------------------~~~~I~~~~~dg~~----------~~~~~~~~l~~P~giaid~~~~~lY~~d~~ 284 (357)
..++|.|++.||+. +.+++..++.+|.|+++|+ +++||.+|.+
T Consensus 171 ~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp-~G~Lw~~e~G 249 (454)
T TIGR03606 171 GANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTP-DGTLYASEQG 249 (454)
T ss_pred cccccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECC-CCCEEEEecC
Confidence 13589999999863 3467788999999999997 8999999965
Q ss_pred C---CeEEEEe
Q psy13635 285 T---DKIEMID 292 (357)
Q Consensus 285 ~---~~I~~~~ 292 (357)
. ..|.++.
T Consensus 250 p~~~DEiN~I~ 260 (454)
T TIGR03606 250 PNSDDELNIIV 260 (454)
T ss_pred CCCCcEEEEec
Confidence 5 3455554
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.6e-08 Score=63.48 Aligned_cols=41 Identities=34% Similarity=0.706 Sum_probs=39.0
Q ss_pred CeEEEEeCCCC-eEEEEEcCCCceEEEecCCCCCceEEEEeC
Q psy13635 188 RNLYWTDTGTD-RIEVCRLEGTHRKVLVNTDLVEPRAITLSP 228 (357)
Q Consensus 188 ~~lY~td~~~~-~I~~~~~~g~~~~~~~~~~~~~P~giavd~ 228 (357)
++|||+|...+ +|++++++|+.+++++...+..|.|||+|+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 58999999999 999999999999999999999999999995
|
The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A .... |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.9e-05 Score=75.71 Aligned_cols=237 Identities=12% Similarity=0.038 Sum_probs=148.9
Q ss_pred CCEEEEEeC-C--CCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCe-EEEEeCC--CCEEEEEEcCCCceEEEE
Q psy13635 82 KSMVCWTDH-G--TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK-LYWTDSE--TNKLEVSSLDGKKRKVLY 155 (357)
Q Consensus 82 ~~~ly~~d~-~--~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~-ly~td~~--~~~I~~~~~~g~~~~~~~ 155 (357)
+..+|++.. . ...|+.++.+|.+ .+.+...+ .-......+.++. +|++... ...|++.++.+...+.+.
T Consensus 155 ~r~~~v~~~~~~~~~~l~~~d~dg~~---~~~~~~~~--~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt 229 (419)
T PRK04043 155 KRKVVFSKYTGPKKSNIVLADYTLTY---QKVIVKGG--LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA 229 (419)
T ss_pred eeEEEEEEccCCCcceEEEECCCCCc---eeEEccCC--CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe
Confidence 467788763 2 3589999999986 23333332 2345667776774 7776543 568999999887766664
Q ss_pred ecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC--CCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEE
Q psy13635 156 WEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG--TDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYL 233 (357)
Q Consensus 156 ~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~--~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~L 233 (357)
... + .....++.|.+++|.++... ...|+.+++++...+.+..... .-..-.++|++.+|
T Consensus 230 ~~~---------------g--~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~-~d~~p~~SPDG~~I 291 (419)
T PRK04043 230 SSQ---------------G--MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPG-IDVNGNFVEDDKRI 291 (419)
T ss_pred cCC---------------C--cEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCC-ccCccEECCCCCEE
Confidence 211 0 01123455566677766443 3489999988876666544321 11233688887788
Q ss_pred EEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCC--------CeEEEEeCCCCCeEEEecCC
Q psy13635 234 FWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKT--------DKIEMIDFDGNNRRELINEN 305 (357)
Q Consensus 234 y~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~--------~~I~~~~~dG~~~~~i~~~~ 305 (357)
|++........|++.+++++..+.+...+... ..++++++.|.++.... ..|+.+++++...+.+....
T Consensus 292 ~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~---~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~ 368 (419)
T PRK04043 292 VFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNN---SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANG 368 (419)
T ss_pred EEEECCCCCceEEEEECCCCCeEeCccCCCcC---ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCC
Confidence 88875543469999999988776665443333 26777888887665432 48999999887776655432
Q ss_pred CCceEEEEEECCEEEEEeCCC--CeEEEEeCccCceeEEEec
Q psy13635 306 LPHVFGISLLGDYVYWTDWQR--RSIDRVNKITGNDREVIIE 345 (357)
Q Consensus 306 ~~~p~gia~~~~~ly~td~~~--~~I~~~~~~~g~~~~~i~~ 345 (357)
....-..+.++..|+++.... ..+..++. +|.....+..
T Consensus 369 ~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l-~g~~~~~l~~ 409 (419)
T PRK04043 369 VNQFPRFSSDGGSIMFIKYLGNQSALGIIRL-NYNKSFLFPL 409 (419)
T ss_pred CcCCeEECCCCCEEEEEEccCCcEEEEEEec-CCCeeEEeec
Confidence 222233555677777765433 34788888 6776665543
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.1e-06 Score=78.64 Aligned_cols=227 Identities=10% Similarity=0.061 Sum_probs=146.2
Q ss_pred CcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeC--CCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcC
Q psy13635 50 KDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDH--GTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 127 (357)
Q Consensus 50 ~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~--~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~ 127 (357)
.+|+.+|.++ .....+...........+.+++.+|+++.. ....|+..++.+.. ...+...-....+.++.+.
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~----~~~l~~~~g~~~~~~~SPD 256 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ----RELVGNFPGMTFAPRFSPD 256 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc----EEEeecCCCcccCcEECCC
Confidence 3688888877 344445455556778889998888877654 34579999998764 3333322223356778888
Q ss_pred CCeEEEEeC--CCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC--CCeEEEE
Q psy13635 128 TEKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG--TDRIEVC 203 (357)
Q Consensus 128 ~~~ly~td~--~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~--~~~I~~~ 203 (357)
++.|+++-. +...|+++++++...+.+.... ......++.+.+..|+++... ...|+++
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~-----------------~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~ 319 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSP-----------------AIDTSPSYSPDGSQIVFESDRSGSPQLYVM 319 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCCCceEEccCCC-----------------CccCceeEcCCCCEEEEEECCCCCCeEEEE
Confidence 888877643 3457999998877655543211 112334666667777665432 3479999
Q ss_pred EcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeC
Q psy13635 204 RLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDA 283 (357)
Q Consensus 204 ~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~ 283 (357)
+.+|...+.+.... ..-...+++|.+..|+++.......+|+..++++...+.+... ......++.+++..|+++-.
T Consensus 320 d~~g~~~~~lt~~~-~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~--~~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 320 NADGSNPRRISFGG-GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSG--FLVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred ECCCCCeEEeecCC-CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCC--CCCCCCeECCCCCEEEEEEc
Confidence 99887666655322 2234467888888888876543235899999988766554322 23455677777788877653
Q ss_pred CC-----CeEEEEeCCCCCeEEE
Q psy13635 284 KT-----DKIEMIDFDGNNRREL 301 (357)
Q Consensus 284 ~~-----~~I~~~~~dG~~~~~i 301 (357)
.. ..++.++++|...+.+
T Consensus 397 ~~~~~~~~~L~~~dl~g~~~~~l 419 (435)
T PRK05137 397 TPGSGGAPKLYTVDLTGRNEREV 419 (435)
T ss_pred cCCCCCcceEEEEECCCCceEEc
Confidence 22 4689999988776544
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.9e-05 Score=76.46 Aligned_cols=226 Identities=12% Similarity=0.075 Sum_probs=140.6
Q ss_pred eEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeC--CCCEEEEEEcCCCceEEEEecCCCCcceeeeeccC
Q psy13635 94 MISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLP 171 (357)
Q Consensus 94 ~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~--~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~ 171 (357)
.|+.++.+|.. ...+..+-......++.+.++.|+++.. +...|++.++.+...+.+....
T Consensus 183 ~l~~~d~dg~~----~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~------------- 245 (435)
T PRK05137 183 RLAIMDQDGAN----VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFP------------- 245 (435)
T ss_pred EEEEECCCCCC----cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCC-------------
Confidence 78888888875 3444444344567788888888877653 3568999999876655443111
Q ss_pred cccccCCceEEEeCCCCeEEEEeCC--CCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEe
Q psy13635 172 TIEVEHPDGVAVDWVARNLYWTDTG--TDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSL 249 (357)
Q Consensus 172 ~~~~~~p~glavD~~~~~lY~td~~--~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~ 249 (357)
......++.+.+.+|+++-.. ...|+..++++...+.+.... ......+++|+..+|+++........|+..+
T Consensus 246 ----g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~-~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d 320 (435)
T PRK05137 246 ----GMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSP-AIDTSPSYSPDGSQIVFESDRSGSPQLYVMN 320 (435)
T ss_pred ----CcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCC-CccCceeEcCCCCEEEEEECCCCCCeEEEEE
Confidence 012345667667778766433 346999999887666554322 2344567888777777765332236899999
Q ss_pred cCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCC--CeEEEEeCCCCCeEEEecCCCCceEEEEE--ECCEEEEEeCC
Q psy13635 250 LNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKT--DKIEMIDFDGNNRRELINENLPHVFGISL--LGDYVYWTDWQ 325 (357)
Q Consensus 250 ~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~--~~I~~~~~dG~~~~~i~~~~~~~p~gia~--~~~~ly~td~~ 325 (357)
++|...+.+.... ..-....+.++++.|+++.... ..|..++++|...+.+.... .....++ ++..|+++...
T Consensus 321 ~~g~~~~~lt~~~-~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~--~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 321 ADGSNPRRISFGG-GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGF--LVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred CCCCCeEEeecCC-CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCC--CCCCCeECCCCCEEEEEEcc
Confidence 9988776665322 1223456777888888776433 47888998887665443321 2233344 46777775543
Q ss_pred C-----CeEEEEeCccCceeEEEec
Q psy13635 326 R-----RSIDRVNKITGNDREVIIE 345 (357)
Q Consensus 326 ~-----~~I~~~~~~~g~~~~~i~~ 345 (357)
. ..++.++. +|+....+..
T Consensus 398 ~~~~~~~~L~~~dl-~g~~~~~l~~ 421 (435)
T PRK05137 398 PGSGGAPKLYTVDL-TGRNEREVPT 421 (435)
T ss_pred CCCCCcceEEEEEC-CCCceEEccC
Confidence 2 36899998 5555555543
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=5e-06 Score=80.40 Aligned_cols=227 Identities=12% Similarity=0.080 Sum_probs=143.5
Q ss_pred cEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCC--CeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCC
Q psy13635 51 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGT--EMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 128 (357)
Q Consensus 51 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~--~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~ 128 (357)
.|+..|.++. ....+...-.......++++++.|+++.... ..|+..++++.. ...+...-.....+++.+.+
T Consensus 185 ~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~----~~~l~~~~g~~~~~~~SpDG 259 (433)
T PRK04922 185 ALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ----RELVASFRGINGAPSFSPDG 259 (433)
T ss_pred EEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC----EEEeccCCCCccCceECCCC
Confidence 5888888773 3444444444566778899888998876543 469999998764 33332211223467888888
Q ss_pred CeEEEEeC--CCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC--CCeEEEEE
Q psy13635 129 EKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG--TDRIEVCR 204 (357)
Q Consensus 129 ~~ly~td~--~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~--~~~I~~~~ 204 (357)
++|+++.. ++..|+++++++...+.+.... ......++.+.++.|+++... ...|+.++
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~-----------------~~~~~~~~spDG~~l~f~sd~~g~~~iy~~d 322 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGSRQLTRLTNHF-----------------GIDTEPTWAPDGKSIYFTSDRGGRPQIYRVA 322 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCCCCeEECccCC-----------------CCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence 88877643 3457999998876654442111 112345677777777766432 23688898
Q ss_pred cCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeC-
Q psy13635 205 LEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDA- 283 (357)
Q Consensus 205 ~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~- 283 (357)
+++...+.+...+ ......+++|.+..|+++........|+..++++...+.+.... .....++.+++..|+++..
T Consensus 323 l~~g~~~~lt~~g-~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~--~~~~p~~spdG~~i~~~s~~ 399 (433)
T PRK04922 323 ASGGSAERLTFQG-NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGS--LDESPSFAPNGSMVLYATRE 399 (433)
T ss_pred CCCCCeEEeecCC-CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCC--CCCCceECCCCCEEEEEEec
Confidence 8766554444322 33456789998888988765432347999998877666543221 2233467767777777654
Q ss_pred -CCCeEEEEeCCCCCeEEEe
Q psy13635 284 -KTDKIEMIDFDGNNRRELI 302 (357)
Q Consensus 284 -~~~~I~~~~~dG~~~~~i~ 302 (357)
+...++.++.+|...+.+.
T Consensus 400 ~g~~~L~~~~~~g~~~~~l~ 419 (433)
T PRK04922 400 GGRGVLAAVSTDGRVRQRLV 419 (433)
T ss_pred CCceEEEEEECCCCceEEcc
Confidence 3457888999887665553
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.2e-05 Score=73.39 Aligned_cols=226 Identities=10% Similarity=0.014 Sum_probs=145.8
Q ss_pred CcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCE-EEEEeCC--CCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEc
Q psy13635 50 KDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSM-VCWTDHG--TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDW 126 (357)
Q Consensus 50 ~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~-ly~~d~~--~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~ 126 (357)
.+|+.+|.+|.. ...+..+ .......+.++.++ +|++... ...|+..++.+.. ...+...-......++.+
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~----~~~lt~~~g~~~~~~~SP 242 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK----KEKIASSQGMLVVSDVSK 242 (419)
T ss_pred ceEEEECCCCCc-eeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc----EEEEecCCCcEEeeEECC
Confidence 478999998853 4434443 35567788888775 7776554 4679999998764 444433222223456777
Q ss_pred CCCeEEEEeC--CCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCC--CeEEE
Q psy13635 127 LTEKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGT--DRIEV 202 (357)
Q Consensus 127 ~~~~ly~td~--~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~--~~I~~ 202 (357)
.++.|.++.. ++..|+.+++++...+.+..... .-....+.|.+++||++.... ..|++
T Consensus 243 DG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~-----------------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~ 305 (419)
T PRK04043 243 DGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPG-----------------IDVNGNFVEDDKRIVFVSDRLGYPNIFM 305 (419)
T ss_pred CCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCC-----------------ccCccEECCCCCEEEEEECCCCCceEEE
Confidence 7878877654 34689999988876655532110 011124666677888875433 38999
Q ss_pred EEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCC------CCeEEEEecCCCceEEEeeCCCCCceEEEEecCCC
Q psy13635 203 CRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEK------RPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNE 276 (357)
Q Consensus 203 ~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~------~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~ 276 (357)
+++++...+.+...+... .+++|.++.|.++..... ...|+.++++++..+.+...... ...++.+++.
T Consensus 306 ~dl~~g~~~rlt~~g~~~---~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~--~~p~~SPDG~ 380 (419)
T PRK04043 306 KKLNSGSVEQVVFHGKNN---SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVN--QFPRFSSDGG 380 (419)
T ss_pred EECCCCCeEeCccCCCcC---ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCc--CCeEECCCCC
Confidence 999987765554433222 378888888877765421 15899999998877766543322 2356777788
Q ss_pred EEEEEeC--CCCeEEEEeCCCCCeEEEec
Q psy13635 277 KLYWCDA--KTDKIEMIDFDGNNRRELIN 303 (357)
Q Consensus 277 ~lY~~d~--~~~~I~~~~~dG~~~~~i~~ 303 (357)
.|+++.. +...+..++++|.....+..
T Consensus 381 ~I~f~~~~~~~~~L~~~~l~g~~~~~l~~ 409 (419)
T PRK04043 381 SIMFIKYLGNQSALGIIRLNYNKSFLFPL 409 (419)
T ss_pred EEEEEEccCCcEEEEEEecCCCeeEEeec
Confidence 8877764 33458899999987766643
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.3e-05 Score=74.65 Aligned_cols=226 Identities=13% Similarity=0.095 Sum_probs=142.1
Q ss_pred cEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCC--CeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCC
Q psy13635 51 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGT--EMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 128 (357)
Q Consensus 51 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~--~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~ 128 (357)
.|+.+|.+|. ....+...-.......+++++++|+++...+ ..|+..+++++. ...+...-......++.+.+
T Consensus 180 ~l~~~d~~g~-~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~----~~~l~~~~g~~~~~~~SpDG 254 (430)
T PRK00178 180 TLQRSDYDGA-RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR----REQITNFEGLNGAPAWSPDG 254 (430)
T ss_pred EEEEECCCCC-CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC----EEEccCCCCCcCCeEECCCC
Confidence 4777888874 3444444444567788999999997765433 479999998764 33332221223457788878
Q ss_pred CeEEEEeC--CCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC--CCeEEEEE
Q psy13635 129 EKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG--TDRIEVCR 204 (357)
Q Consensus 129 ~~ly~td~--~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~--~~~I~~~~ 204 (357)
+.|+++-. +...|+++++++...+.+.... ......++.+.++.||++... ...|++.+
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~-----------------~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d 317 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQLSRVTNHP-----------------AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVN 317 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeEEcccCC-----------------CCcCCeEECCCCCEEEEEECCCCCceEEEEE
Confidence 88887643 3347999999877655443111 112334566667778776433 23789888
Q ss_pred cCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCC
Q psy13635 205 LEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAK 284 (357)
Q Consensus 205 ~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~ 284 (357)
+++...+.+.... ......+++|.++.|+++........|+..++++...+.+.... ......+.+.+..|+++...
T Consensus 318 ~~~g~~~~lt~~~-~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~--~~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 318 VNGGRAERVTFVG-NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTS--LDESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred CCCCCEEEeecCC-CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCC--CCCCceECCCCCEEEEEEec
Confidence 8766555443322 22334678888889988875432347999999887666554322 11233677778888887643
Q ss_pred --CCeEEEEeCCCCCeEEE
Q psy13635 285 --TDKIEMIDFDGNNRREL 301 (357)
Q Consensus 285 --~~~I~~~~~dG~~~~~i 301 (357)
...++.++.+|...+.+
T Consensus 395 ~g~~~l~~~~~~g~~~~~l 413 (430)
T PRK00178 395 QGRGVLMLVSINGRVRLPL 413 (430)
T ss_pred CCceEEEEEECCCCceEEC
Confidence 35688888888766444
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.9e-05 Score=76.41 Aligned_cols=229 Identities=18% Similarity=0.175 Sum_probs=140.1
Q ss_pred eEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCC--CCEEEEEEcCCCceEEEEecCCCCcceeeeeccC
Q psy13635 94 MISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSE--TNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLP 171 (357)
Q Consensus 94 ~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~--~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~ 171 (357)
.|+.++.+|.. ...+..+-....+.++.+.++.|+++... ...|++.++++...+.+....
T Consensus 185 ~l~i~D~~g~~----~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~------------- 247 (433)
T PRK04922 185 ALQVADSDGYN----PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFR------------- 247 (433)
T ss_pred EEEEECCCCCC----ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC-------------
Confidence 47777777764 33333333334567788888888887643 457999999876655443111
Q ss_pred cccccCCceEEEeCCCCeEEEEeCC--CCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEe
Q psy13635 172 TIEVEHPDGVAVDWVARNLYWTDTG--TDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSL 249 (357)
Q Consensus 172 ~~~~~~p~glavD~~~~~lY~td~~--~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~ 249 (357)
......++.+.+++|+++... ...|+..++++...+.+... .......+++|.+..|+++........|+..+
T Consensus 248 ----g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~-~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~d 322 (433)
T PRK04922 248 ----GINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNH-FGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVA 322 (433)
T ss_pred ----CCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccC-CCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence 012245777778888776432 34799999987765554432 22334678888877777765332225899999
Q ss_pred cCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCC--CeEEEEeCCCCCeEEEecCCCCceEEEEEECCEEEEEeCC--
Q psy13635 250 LNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKT--DKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQ-- 325 (357)
Q Consensus 250 ~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~--~~I~~~~~dG~~~~~i~~~~~~~p~gia~~~~~ly~td~~-- 325 (357)
+++...+.+...+ ......++.+++..|+++.... ..|+..++++...+.+.......-...+.++..++++...
T Consensus 323 l~~g~~~~lt~~g-~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~g 401 (433)
T PRK04922 323 ASGGSAERLTFQG-NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATREGG 401 (433)
T ss_pred CCCCCeEEeecCC-CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEecCC
Confidence 9876665554332 2344578888888998876433 3688999877666544322111111333446677766543
Q ss_pred CCeEEEEeCccCceeEEEecc
Q psy13635 326 RRSIDRVNKITGNDREVIIER 346 (357)
Q Consensus 326 ~~~I~~~~~~~g~~~~~i~~~ 346 (357)
...|+.++. +|+....+..+
T Consensus 402 ~~~L~~~~~-~g~~~~~l~~~ 421 (433)
T PRK04922 402 RGVLAAVST-DGRVRQRLVSA 421 (433)
T ss_pred ceEEEEEEC-CCCceEEcccC
Confidence 346888888 67766666543
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.76 E-value=0.00012 Score=64.73 Aligned_cols=257 Identities=12% Similarity=0.075 Sum_probs=150.3
Q ss_pred CcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCc
Q psy13635 71 EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKK 150 (357)
Q Consensus 71 ~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~ 150 (357)
....++++++.++.|+.+. .++.|...++++.. ..............+.+.+.++.++ +-...+.|...+.+...
T Consensus 10 ~~i~~~~~~~~~~~l~~~~-~~g~i~i~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~~~~i~i~~~~~~~ 84 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGS-GDGTIKVWDLETGE---LLRTLKGHTGPVRDVAASADGTYLA-SGSSDKTIRLWDLETGE 84 (289)
T ss_pred CCEEEEEEcCCCCEEEEee-cCcEEEEEEeeCCC---cEEEEecCCcceeEEEECCCCCEEE-EEcCCCeEEEEEcCccc
Confidence 4567888887656555544 46677777776553 1222222222334777876554444 44457889988887642
Q ss_pred eEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCC
Q psy13635 151 RKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAH 230 (357)
Q Consensus 151 ~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~ 230 (357)
........ ...+..+.+++. +.++++....+.|...++...............+..++++|.+
T Consensus 85 ~~~~~~~~----------------~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 147 (289)
T cd00200 85 CVRTLTGH----------------TSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG 147 (289)
T ss_pred ceEEEecc----------------CCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcC
Confidence 22221110 114566777755 4566666656788888887433333333333467899999874
Q ss_pred CEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceE
Q psy13635 231 GYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVF 310 (357)
Q Consensus 231 g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~ 310 (357)
..++.+... +.|...++............-.....+++++.+..++.+.. .+.|...+................+.
T Consensus 148 ~~l~~~~~~---~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~i~ 223 (289)
T cd00200 148 TFVASSSQD---GTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTGKCLGTLRGHENGVN 223 (289)
T ss_pred CEEEEEcCC---CcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC-CCcEEEEECCCCceecchhhcCCceE
Confidence 455444423 47888887644433333333345678899865556766655 77888888865433222222233566
Q ss_pred EEEEEC-CEEEEEeCCCCeEEEEeCccCceeEEEecccCCceee
Q psy13635 311 GISLLG-DYVYWTDWQRRSIDRVNKITGNDREVIIERSCTGVTR 353 (357)
Q Consensus 311 gia~~~-~~ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~i 353 (357)
.+++.. +.++++....+.|..++..+++....+......+..+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~ 267 (289)
T cd00200 224 SVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSL 267 (289)
T ss_pred EEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEE
Confidence 777764 6666666667888888876666665555333333333
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.6e-05 Score=74.38 Aligned_cols=228 Identities=14% Similarity=0.103 Sum_probs=139.6
Q ss_pred eEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCC--CCEEEEEEcCCCceEEEEecCCCCcceeeeeccC
Q psy13635 94 MISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSE--TNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLP 171 (357)
Q Consensus 94 ~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~--~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~ 171 (357)
.|+.++.+|.. ...+...-......++.+.++.|+++... ...|++.++++...+.+....
T Consensus 180 ~l~~~d~~g~~----~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~------------- 242 (430)
T PRK00178 180 TLQRSDYDGAR----AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE------------- 242 (430)
T ss_pred EEEEECCCCCC----ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC-------------
Confidence 47777888764 33333332334667888888888776533 357999999876655543111
Q ss_pred cccccCCceEEEeCCCCeEEEEeCC--CCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEe
Q psy13635 172 TIEVEHPDGVAVDWVARNLYWTDTG--TDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSL 249 (357)
Q Consensus 172 ~~~~~~p~glavD~~~~~lY~td~~--~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~ 249 (357)
......++.+.+++|+++-.. ...|++.++++...+.+... .......+++|.+..|+++........|+..+
T Consensus 243 ----g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~-~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d 317 (430)
T PRK00178 243 ----GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNH-PAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVN 317 (430)
T ss_pred ----CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccC-CCCcCCeEECCCCCEEEEEECCCCCceEEEEE
Confidence 012235667777788776433 23799999988766555432 22344567888877887775433236899999
Q ss_pred cCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCC--CeEEEEeCCCCCeEEEecCCCCceEEEEEECCEEEEEeCCC-
Q psy13635 250 LNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKT--DKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQR- 326 (357)
Q Consensus 250 ~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~--~~I~~~~~dG~~~~~i~~~~~~~p~gia~~~~~ly~td~~~- 326 (357)
+++...+.+...+ ......++.++++.|+++.... ..|+.+++++...+.+..........++.++..++++....
T Consensus 318 ~~~g~~~~lt~~~-~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~~g 396 (430)
T PRK00178 318 VNGGRAERVTFVG-NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQQG 396 (430)
T ss_pred CCCCCEEEeecCC-CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEEecCC
Confidence 8877665554222 2223456777888998887543 36888898877665554322222123455677888876543
Q ss_pred -CeEEEEeCccCceeEEEec
Q psy13635 327 -RSIDRVNKITGNDREVIIE 345 (357)
Q Consensus 327 -~~I~~~~~~~g~~~~~i~~ 345 (357)
..|+.++. +|+....+..
T Consensus 397 ~~~l~~~~~-~g~~~~~l~~ 415 (430)
T PRK00178 397 RGVLMLVSI-NGRVRLPLPT 415 (430)
T ss_pred ceEEEEEEC-CCCceEECcC
Confidence 45788887 6666655543
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.7e-05 Score=74.21 Aligned_cols=228 Identities=11% Similarity=0.080 Sum_probs=145.3
Q ss_pred CcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeC--CCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcC
Q psy13635 50 KDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDH--GTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 127 (357)
Q Consensus 50 ~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~--~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~ 127 (357)
.+|+.+|.+|.. ...+...........++|++.+|.++.. ....|+..+++++. ...+...-.....+++.+.
T Consensus 179 ~~l~~~d~dg~~-~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~----~~~l~~~~~~~~~~~~SPD 253 (429)
T PRK03629 179 YELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPD 253 (429)
T ss_pred eeEEEEcCCCCC-CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC----eEEccCCCCCcCCeEECCC
Confidence 368899998843 3444444456778899999888877643 23478888888764 3333222222345789988
Q ss_pred CCeEEEEeC--CCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEe-CC-CCeEEEE
Q psy13635 128 TEKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTD-TG-TDRIEVC 203 (357)
Q Consensus 128 ~~~ly~td~--~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td-~~-~~~I~~~ 203 (357)
++.|+++.. +...|+.+++++...+.+.... ......++.+.++.|+++. .. ...|+++
T Consensus 254 G~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~-----------------~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~ 316 (429)
T PRK03629 254 GSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR-----------------SNNTEPTWFPDSQNLAYTSDQAGRPQVYKV 316 (429)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEEEccCCC-----------------CCcCceEECCCCCEEEEEeCCCCCceEEEE
Confidence 889998743 3347999998876655543211 1234556777777775553 32 3479999
Q ss_pred EcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeC
Q psy13635 204 RLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDA 283 (357)
Q Consensus 204 ~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~ 283 (357)
++++...+.+... .......+++|.+..|+++........|+..++++...+.+.... .-....+.+++..|+++..
T Consensus 317 d~~~g~~~~lt~~-~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~--~~~~p~~SpDG~~i~~~s~ 393 (429)
T PRK03629 317 NINGGAPQRITWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTF--LDETPSIAPNGTMVIYSSS 393 (429)
T ss_pred ECCCCCeEEeecC-CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCC--CCCCceECCCCCEEEEEEc
Confidence 9987666555432 233456788888778877765432357889999877666554321 1123456667777877665
Q ss_pred CC--CeEEEEeCCCCCeEEEe
Q psy13635 284 KT--DKIEMIDFDGNNRRELI 302 (357)
Q Consensus 284 ~~--~~I~~~~~dG~~~~~i~ 302 (357)
.. ..++.++.+|...+.+.
T Consensus 394 ~~~~~~l~~~~~~G~~~~~l~ 414 (429)
T PRK03629 394 QGMGSVLNLVSTDGRFKARLP 414 (429)
T ss_pred CCCceEEEEEECCCCCeEECc
Confidence 33 34778888998776653
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.3e-05 Score=74.58 Aligned_cols=239 Identities=15% Similarity=0.110 Sum_probs=140.6
Q ss_pred EEEEEeCC-CCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCC--CCEEEEEEcCCCceEEEEecCCC
Q psy13635 84 MVCWTDHG-TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSE--TNKLEVSSLDGKKRKVLYWEDID 160 (357)
Q Consensus 84 ~ly~~d~~-~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~--~~~I~~~~~~g~~~~~~~~~~~~ 160 (357)
-.|++... ...|+.++.+|.. ...+...-......++.|.++.|+++... ...|+..++++.....+....
T Consensus 166 iayv~~~~~~~~L~~~D~dG~~----~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~-- 239 (427)
T PRK02889 166 IAYVIKTGNRYQLQISDADGQN----AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK-- 239 (427)
T ss_pred EEEEEccCCccEEEEECCCCCC----ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC--
Confidence 33554332 2468888887764 22222222234467888888888877643 357999999876655443111
Q ss_pred CcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC--CCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeC
Q psy13635 161 QPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG--TDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDW 238 (357)
Q Consensus 161 ~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~--~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~ 238 (357)
......++.+.+++|+++-.. ...|+.++.++...+.+... .......+++|++.+|+++..
T Consensus 240 ---------------g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~-~~~~~~~~wSpDG~~l~f~s~ 303 (427)
T PRK02889 240 ---------------GSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQS-SGIDTEPFFSPDGRSIYFTSD 303 (427)
T ss_pred ---------------CCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCC-CCCCcCeEEcCCCCEEEEEec
Confidence 012345677777788775332 34789999887765555432 122345678887777776643
Q ss_pred CCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCC--CeEEEEeCCCCCeEEEecCCCCceEEEEEEC
Q psy13635 239 NEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKT--DKIEMIDFDGNNRRELINENLPHVFGISLLG 316 (357)
Q Consensus 239 ~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~--~~I~~~~~dG~~~~~i~~~~~~~p~gia~~~ 316 (357)
......|+..+.++...+.+...+ ......++.+++..|+++.... ..|+..++++...+.+...........+.++
T Consensus 304 ~~g~~~Iy~~~~~~g~~~~lt~~g-~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg 382 (427)
T PRK02889 304 RGGAPQIYRMPASGGAAQRVTFTG-SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNG 382 (427)
T ss_pred CCCCcEEEEEECCCCceEEEecCC-CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCC
Confidence 222368999998876655544222 2223456777788887765433 3688889877665555432222212233456
Q ss_pred CEEEEEeCCC--CeEEEEeCccCceeEEEecc
Q psy13635 317 DYVYWTDWQR--RSIDRVNKITGNDREVIIER 346 (357)
Q Consensus 317 ~~ly~td~~~--~~I~~~~~~~g~~~~~i~~~ 346 (357)
..|+++.... ..++.++. +|+....+..+
T Consensus 383 ~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~ 413 (427)
T PRK02889 383 RYILYATQQGGRSVLAAVSS-DGRIKQRLSVQ 413 (427)
T ss_pred CEEEEEEecCCCEEEEEEEC-CCCceEEeecC
Confidence 6776655333 33777787 67777666543
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.3e-05 Score=73.16 Aligned_cols=228 Identities=15% Similarity=0.122 Sum_probs=143.2
Q ss_pred eEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeC--CCCEEEEEEcCCCceEEEEecCCCCcceeeeeccC
Q psy13635 94 MISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLP 171 (357)
Q Consensus 94 ~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~--~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~ 171 (357)
.|+.++.+|.+ ...+..+-......++.|.++.|.++.. +...|+..++++...+.+....
T Consensus 180 ~l~~~d~dg~~----~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~------------- 242 (429)
T PRK03629 180 ELRVSDYDGYN----QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP------------- 242 (429)
T ss_pred eEEEEcCCCCC----CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC-------------
Confidence 68888888875 3334444444567889988888877643 3457888888776555443110
Q ss_pred cccccCCceEEEeCCCCeEEEEeCCC--CeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEe
Q psy13635 172 TIEVEHPDGVAVDWVARNLYWTDTGT--DRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSL 249 (357)
Q Consensus 172 ~~~~~~p~glavD~~~~~lY~td~~~--~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~ 249 (357)
......++.|.+.+|+++.... ..|+..++++...+.+.... ......+++|.+..|+++.......+|++++
T Consensus 243 ----~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~-~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d 317 (429)
T PRK03629 243 ----RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR-SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVN 317 (429)
T ss_pred ----CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCC-CCcCceEECCCCCEEEEEeCCCCCceEEEEE
Confidence 1123467787788898874433 36999999877666554432 3456778898877776654332235899999
Q ss_pred cCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCC--CCeEEEEeCCCCCeEEEecCCCCceEEEEEECCEEEEEeCCCC
Q psy13635 250 LNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAK--TDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQRR 327 (357)
Q Consensus 250 ~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~--~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~~~~ly~td~~~~ 327 (357)
+++...+.+... .......++.+++..|+++... ...|+.+++++...+.+..........++-++..|+++....+
T Consensus 318 ~~~g~~~~lt~~-~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~ 396 (429)
T PRK03629 318 INGGAPQRITWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGM 396 (429)
T ss_pred CCCCCeEEeecC-CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCC
Confidence 998766655432 2233456777777888776543 3468888988776655543211222234455667777664432
Q ss_pred --eEEEEeCccCceeEEEec
Q psy13635 328 --SIDRVNKITGNDREVIIE 345 (357)
Q Consensus 328 --~I~~~~~~~g~~~~~i~~ 345 (357)
.++.++. +|+....+..
T Consensus 397 ~~~l~~~~~-~G~~~~~l~~ 415 (429)
T PRK03629 397 GSVLNLVST-DGRFKARLPA 415 (429)
T ss_pred ceEEEEEEC-CCCCeEECcc
Confidence 3666777 7777766654
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.6e-05 Score=72.23 Aligned_cols=204 Identities=17% Similarity=0.174 Sum_probs=119.6
Q ss_pred EEEEEEEccCCEEEEEeCCC------------CeEEEEEcCCCCcceeEEEEeC----CcCCceeEEEEcCC-----CeE
Q psy13635 73 GAAIDYYYKKSMVCWTDHGT------------EMISCCTFDGNNVGSKHNVITN----GLITPDGLAIDWLT-----EKL 131 (357)
Q Consensus 73 ~~~i~~d~~~~~ly~~d~~~------------~~I~~~~~~g~~~~~~~~~~~~----~~~~p~glavd~~~-----~~l 131 (357)
..++.+|. .++||+.|.+. -+|..+++....... .-.+.. +-.....++||... +.+
T Consensus 3 V~~v~iD~-~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~-~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~a 80 (287)
T PF03022_consen 3 VQRVQIDE-CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIR-RYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFA 80 (287)
T ss_dssp EEEEEE-T-TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEE-EEE--CCCS-TCGGEEEEEEECTTTTS-SEEE
T ss_pred ccEEEEcC-CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEE-EEECChHHcccccccceEEEEccCCCCcceEE
Confidence 34556663 56677776542 256666666554211 111111 22345678999644 479
Q ss_pred EEEeCCCCEEEEEEcCCCceEEEEe-cCCCCcceeeeeccCcccc---cCCceEEEeC---CCCeEEEEeCCCCeEEEEE
Q psy13635 132 YWTDSETNKLEVSSLDGKKRKVLYW-EDIDQPRAIASYKLPTIEV---EHPDGVAVDW---VARNLYWTDTGTDRIEVCR 204 (357)
Q Consensus 132 y~td~~~~~I~~~~~~g~~~~~~~~-~~~~~p~~i~~~~~~~~~~---~~p~glavD~---~~~~lY~td~~~~~I~~~~ 204 (357)
|++|.+...|.++++.......+.. .-...|...... +....+ .+..|++..+ .++.|||.-....+++++.
T Consensus 81 YItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~-i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~ 159 (287)
T PF03022_consen 81 YITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFT-IGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVP 159 (287)
T ss_dssp EEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEE-ETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEE
T ss_pred EEeCCCcCcEEEEEccCCcEEEEecCCcceecccccee-ccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEE
Confidence 9999999999999987655544433 222333222210 001111 2356778865 4458999998888888886
Q ss_pred cC----CC---------ceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCC----CceEEEe-eCC-CCC
Q psy13635 205 LE----GT---------HRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNG----GERVLLV-KDR-LGW 265 (357)
Q Consensus 205 ~~----g~---------~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg----~~~~~~~-~~~-l~~ 265 (357)
.. .. ..+.+.. ......|+++|+ +|.||+++... ..|.+.+.++ .+...++ ... +.+
T Consensus 160 T~~L~~~~~~~~~~~~~~v~~lG~-k~~~s~g~~~D~-~G~ly~~~~~~--~aI~~w~~~~~~~~~~~~~l~~d~~~l~~ 235 (287)
T PF03022_consen 160 TSVLRDPSLSDAQALASQVQDLGD-KGSQSDGMAIDP-NGNLYFTDVEQ--NAIGCWDPDGPYTPENFEILAQDPRTLQW 235 (287)
T ss_dssp HHHHCSTT--HHH-HHHT-EEEEE----SECEEEEET-TTEEEEEECCC--TEEEEEETTTSB-GCCEEEEEE-CC-GSS
T ss_pred HHHhhCccccccccccccceeccc-cCCCCceEEECC-CCcEEEecCCC--CeEEEEeCCCCcCccchheeEEcCceeec
Confidence 32 11 1122222 124568999997 69999999995 4999999998 3444444 344 899
Q ss_pred ceEEEEecC--CCEEEEEeCC
Q psy13635 266 PNGITLDVD--NEKLYWCDAK 284 (357)
Q Consensus 266 P~giaid~~--~~~lY~~d~~ 284 (357)
|.+++++ . ++.||+....
T Consensus 236 pd~~~i~-~~~~g~L~v~snr 255 (287)
T PF03022_consen 236 PDGLKID-PEGDGYLWVLSNR 255 (287)
T ss_dssp EEEEEE--T--TS-EEEEE-S
T ss_pred cceeeec-cccCceEEEEECc
Confidence 9999998 5 7999998744
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.1e-06 Score=72.74 Aligned_cols=208 Identities=13% Similarity=0.130 Sum_probs=138.9
Q ss_pred CCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEE-EEeCCCCEEEEEEcCC
Q psy13635 70 LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLY-WTDSETNKLEVSSLDG 148 (357)
Q Consensus 70 ~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly-~td~~~~~I~~~~~~g 148 (357)
..+..++.|++..+.||-+-...-.|..++.+|.- ..++-..+++.|++|++- +++.| ++|...+++..+..+-
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdl---irtiPL~g~~DpE~Ieyi--g~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDL---IRTIPLTGFSDPETIEYI--GGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCce---EEEecccccCChhHeEEe--cCCEEEEEehhcceEEEEEEcC
Confidence 34578999999999999886666788888988874 355666789999999997 44444 5777788888877664
Q ss_pred CceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCC-eEEEEEcCCCceEEEecC--------CCC
Q psy13635 149 KKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTD-RIEVCRLEGTHRKVLVNT--------DLV 219 (357)
Q Consensus 149 ~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~-~I~~~~~~g~~~~~~~~~--------~~~ 219 (357)
.......... .+.+ .-..+...+-+|+|-|+.++++|++-..+- +|+..+..-+....-... .+.
T Consensus 160 ~t~~~~~~~~-----~i~L-~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~ 233 (316)
T COG3204 160 DTTVISAKVQ-----KIPL-GTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVL 233 (316)
T ss_pred CccEEeccce-----EEec-cccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEee
Confidence 4322211110 0000 000222346789999999999999977543 677666433222111111 134
Q ss_pred CceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEe--------eCCCCCceEEEEecCCCEEEEEeCCCCeEEEE
Q psy13635 220 EPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLV--------KDRLGWPNGITLDVDNEKLYWCDAKTDKIEMI 291 (357)
Q Consensus 220 ~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~--------~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~ 291 (357)
...|+.+|+.++.|++-.... +.+..++.+|..+..+. ...+.+|.|||.| .+|.||++..- +.-+++
T Consensus 234 DvSgl~~~~~~~~LLVLS~ES--r~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamD-d~g~lYIvSEP-nlfy~F 309 (316)
T COG3204 234 DVSGLEFNAITNSLLVLSDES--RRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMD-DDGNLYIVSEP-NLFYRF 309 (316)
T ss_pred ccccceecCCCCcEEEEecCC--ceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEEC-CCCCEEEEecC-Ccceec
Confidence 567899999999888876663 59999999998655443 2246789999999 89999987643 334444
Q ss_pred e
Q psy13635 292 D 292 (357)
Q Consensus 292 ~ 292 (357)
.
T Consensus 310 ~ 310 (316)
T COG3204 310 T 310 (316)
T ss_pred c
Confidence 3
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.5e-05 Score=73.21 Aligned_cols=230 Identities=18% Similarity=0.140 Sum_probs=138.5
Q ss_pred CeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCC--CEEEEEEcCCCceEEEEecCCCCcceeeeecc
Q psy13635 93 EMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSET--NKLEVSSLDGKKRKVLYWEDIDQPRAIASYKL 170 (357)
Q Consensus 93 ~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~--~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~ 170 (357)
..|+..+.+|.. ...+...-......++.+.++.|+|+.... ..|++.++.+.....+....
T Consensus 170 ~~l~~~d~~g~~----~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~------------ 233 (417)
T TIGR02800 170 YELQVADYDGAN----PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFP------------ 233 (417)
T ss_pred ceEEEEcCCCCC----CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCC------------
Confidence 468888887764 333332222344567888888898886543 57888888765444332110
Q ss_pred CcccccCCceEEEeCCCCeEEEEeCCC--CeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEE
Q psy13635 171 PTIEVEHPDGVAVDWVARNLYWTDTGT--DRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERS 248 (357)
Q Consensus 171 ~~~~~~~p~glavD~~~~~lY~td~~~--~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~ 248 (357)
......++.+.++.|+++.... ..|+..++++...+.+.... ......+++|.+.+|+++........|+.+
T Consensus 234 -----~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~ 307 (417)
T TIGR02800 234 -----GMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGP-GIDTEPSWSPDGKSIAFTSDRGGSPQIYMM 307 (417)
T ss_pred -----CCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCC-CCCCCEEECCCCCEEEEEECCCCCceEEEE
Confidence 1223456777777888765433 37999998876555443321 122345677776778776543223589999
Q ss_pred ecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCC--CeEEEEeCCCCCeEEEecCCCCceEEEEEECCEEEEEeCCC
Q psy13635 249 LLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKT--DKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQR 326 (357)
Q Consensus 249 ~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~--~~I~~~~~dG~~~~~i~~~~~~~p~gia~~~~~ly~td~~~ 326 (357)
++++...+.+... .......++.+.+..|+++.... .+|+.+++++...+.+..........++.+++.|+++....
T Consensus 308 d~~~~~~~~l~~~-~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 308 DADGGEVRRLTFR-GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred ECCCCCEEEeecC-CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEEEeCC
Confidence 9988766555422 23445677887788888887543 47889998876554443221111113444677888876554
Q ss_pred C--eEEEEeCccCceeEEEecc
Q psy13635 327 R--SIDRVNKITGNDREVIIER 346 (357)
Q Consensus 327 ~--~I~~~~~~~g~~~~~i~~~ 346 (357)
+ .++.++. +|+....+...
T Consensus 387 ~~~~l~~~~~-~g~~~~~~~~~ 407 (417)
T TIGR02800 387 GRGVLGLVST-DGRFRARLPLG 407 (417)
T ss_pred CcEEEEEEEC-CCceeeECCCC
Confidence 3 3455554 67766666543
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.6e-08 Score=70.25 Aligned_cols=73 Identities=19% Similarity=0.329 Sum_probs=58.3
Q ss_pred eEEEEeCCCCEEEEEeCCCC---------------CCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCC
Q psy13635 222 RAITLSPAHGYLFWSDWNEK---------------RPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTD 286 (357)
Q Consensus 222 ~giavd~~~g~Ly~~d~~~~---------------~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~ 286 (357)
++++|++.+|.+||||.... .+++.+.++.....+++. .++..|+|+++.+++..|++++....
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~-~~L~fpNGVals~d~~~vlv~Et~~~ 79 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLL-DGLYFPNGVALSPDESFVLVAETGRY 79 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEE-EEESSEEEEEE-TTSSEEEEEEGGGT
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEeh-hCCCccCeEEEcCCCCEEEEEeccCc
Confidence 47899987799999997543 589999999977666665 67999999999999999999999999
Q ss_pred eEEEEeCCC
Q psy13635 287 KIEMIDFDG 295 (357)
Q Consensus 287 ~I~~~~~dG 295 (357)
+|.+.-+.|
T Consensus 80 Ri~rywl~G 88 (89)
T PF03088_consen 80 RILRYWLKG 88 (89)
T ss_dssp EEEEEESSS
T ss_pred eEEEEEEeC
Confidence 999998877
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.3e-05 Score=69.64 Aligned_cols=241 Identities=15% Similarity=0.103 Sum_probs=148.6
Q ss_pred ceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcC-----CCCcceeEEEEeC------CcCCceeEEEEcCCCe-
Q psy13635 63 PVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFD-----GNNVGSKHNVITN------GLITPDGLAIDWLTEK- 130 (357)
Q Consensus 63 ~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~-----g~~~~~~~~~~~~------~~~~p~glavd~~~~~- 130 (357)
....-+++.+++||++.+ .+.+|++|..++...-.+.+ |.. ....+... ....|.|+.+...+.-
T Consensus 15 A~~tDp~L~N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~--~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~ 91 (336)
T TIGR03118 15 AQIVDPGLRNAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQ--DPLVVVIPAPPPLAAEGTPTGQVFNGSDTFV 91 (336)
T ss_pred ccccCccccccceeEecC-CCCEEEecCCcceEEeecCCcccccCCc--cceEEEecCCCCCCCCCCccEEEEeCCCceE
Confidence 444557899999999998 56889999988877766666 332 11111111 2357999999853331
Q ss_pred ----------EEEEeCCCCEEEEEEcCCCce----E-EEEecCCCCcceeeeeccCcccccCCceEEEeCC--CCeEEEE
Q psy13635 131 ----------LYWTDSETNKLEVSSLDGKKR----K-VLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWV--ARNLYWT 193 (357)
Q Consensus 131 ----------ly~td~~~~~I~~~~~~g~~~----~-~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~--~~~lY~t 193 (357)
.|+..++.++|.-....-... . +++... ....--.|||+-.. ++.||.+
T Consensus 92 vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s--------------~~gavYkGLAi~~~~~~~~LYaa 157 (336)
T TIGR03118 92 VSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDAS--------------QQGNVYKGLAVGPTGGGDYLYAA 157 (336)
T ss_pred EcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccC--------------CCcceeeeeEEeecCCCceEEEe
Confidence 011122234444433211111 1 111110 01122468888643 6799999
Q ss_pred eCCCCeEEEEEcCCCceEEEecCC--------CCCceEEEEeCCCCEEEEEeCCCC-----------CCeEEEEecCCCc
Q psy13635 194 DTGTDRIEVCRLEGTHRKVLVNTD--------LVEPRAITLSPAHGYLFWSDWNEK-----------RPKIERSLLNGGE 254 (357)
Q Consensus 194 d~~~~~I~~~~~~g~~~~~~~~~~--------~~~P~giavd~~~g~Ly~~d~~~~-----------~~~I~~~~~dg~~ 254 (357)
|..+++|.+++-.-.. +..... --.|.+|.-- .++||++-.... .+.|...+++|.-
T Consensus 158 dF~~g~IDVFd~~f~~--~~~~g~F~DP~iPagyAPFnIqni--g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l 233 (336)
T TIGR03118 158 NFRQGRIDVFKGSFRP--PPLPGSFIDPALPAGYAPFNVQNL--GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQL 233 (336)
T ss_pred ccCCCceEEecCcccc--ccCCCCccCCCCCCCCCCcceEEE--CCeEEEEEEecCCcccccccCCCcceEEEEcCCCcE
Confidence 9999999998544332 222211 2356777655 699999964322 4689999999998
Q ss_pred eEEEeeC-CCCCceEEEEec-----CCCEEEEEeCCCCeEEEEeCC-CCCeEEEecCC-----CCceEEEEEEC------
Q psy13635 255 RVLLVKD-RLGWPNGITLDV-----DNEKLYWCDAKTDKIEMIDFD-GNNRRELINEN-----LPHVFGISLLG------ 316 (357)
Q Consensus 255 ~~~~~~~-~l~~P~giaid~-----~~~~lY~~d~~~~~I~~~~~d-G~~~~~i~~~~-----~~~p~gia~~~------ 316 (357)
.+.+.+. .|..|-||++-+ ..+.|.+-+.+.++|-.+|.. |...-.+.... +....||++-.
T Consensus 234 ~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGng~~~~~ 313 (336)
T TIGR03118 234 LRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGNGVSGGS 313 (336)
T ss_pred EEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCCCcCCCC
Confidence 8877654 489999999844 578999999999999999985 65443333211 22345666642
Q ss_pred -CEEEEEeC
Q psy13635 317 -DYVYWTDW 324 (357)
Q Consensus 317 -~~ly~td~ 324 (357)
+.||++--
T Consensus 314 ~ntLyFaAG 322 (336)
T TIGR03118 314 ANYLYFTAG 322 (336)
T ss_pred cceEEEEeC
Confidence 46888753
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.3e-08 Score=60.20 Aligned_cols=40 Identities=43% Similarity=0.771 Sum_probs=38.1
Q ss_pred CEEEEEeCCCC-eEEEEeCCCCCeEEEecCCCCceEEEEEE
Q psy13635 276 EKLYWCDAKTD-KIEMIDFDGNNRRELINENLPHVFGISLL 315 (357)
Q Consensus 276 ~~lY~~d~~~~-~I~~~~~dG~~~~~i~~~~~~~p~gia~~ 315 (357)
++|||+|...+ +|.++++||++++.++.+.+.+|.||++|
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD 41 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVD 41 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEE
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEEC
Confidence 58999999999 99999999999999999999999999997
|
The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A .... |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.2e-05 Score=74.60 Aligned_cols=227 Identities=12% Similarity=0.095 Sum_probs=140.6
Q ss_pred CcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCC--CeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcC
Q psy13635 50 KDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGT--EMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 127 (357)
Q Consensus 50 ~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~--~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~ 127 (357)
.+|+.+|.+|. ....+..........+++|++.+|+++...+ ..|+..++++.. ...+...-......++.+.
T Consensus 176 ~~L~~~D~dG~-~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~----~~~l~~~~g~~~~~~~SPD 250 (427)
T PRK02889 176 YQLQISDADGQ-NAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR----RRVVANFKGSNSAPAWSPD 250 (427)
T ss_pred cEEEEECCCCC-CceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC----EEEeecCCCCccceEECCC
Confidence 36888888773 3333334344556788999888998776433 469999998764 3333322223356788888
Q ss_pred CCeEEEEeC--CCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeC--CCCeEEEE
Q psy13635 128 TEKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDT--GTDRIEVC 203 (357)
Q Consensus 128 ~~~ly~td~--~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~--~~~~I~~~ 203 (357)
++.|+++-. +...|+.+++++...+.+.... ......++.+.+..|+++.. +...|+.+
T Consensus 251 G~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~-----------------~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~ 313 (427)
T PRK02889 251 GRTLAVALSRDGNSQIYTVNADGSGLRRLTQSS-----------------GIDTEPFFSPDGRSIYFTSDRGGAPQIYRM 313 (427)
T ss_pred CCEEEEEEccCCCceEEEEECCCCCcEECCCCC-----------------CCCcCeEEcCCCCEEEEEecCCCCcEEEEE
Confidence 888887533 3457888888776654442111 11233456766777776543 23478888
Q ss_pred EcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeC
Q psy13635 204 RLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDA 283 (357)
Q Consensus 204 ~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~ 283 (357)
+.++...+.+...+ ......+++|.+..|+++........|+..++++...+.+.... ......+.+++..|+++..
T Consensus 314 ~~~~g~~~~lt~~g-~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~--~~~~p~~spdg~~l~~~~~ 390 (427)
T PRK02889 314 PASGGAAQRVTFTG-SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTT--RDESPSFAPNGRYILYATQ 390 (427)
T ss_pred ECCCCceEEEecCC-CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCC--CccCceECCCCCEEEEEEe
Confidence 88776554443322 22335678888788887764422247999998877666554332 2234577777777877653
Q ss_pred C--CCeEEEEeCCCCCeEEE
Q psy13635 284 K--TDKIEMIDFDGNNRREL 301 (357)
Q Consensus 284 ~--~~~I~~~~~dG~~~~~i 301 (357)
. ...++.++.+|...+.+
T Consensus 391 ~~g~~~l~~~~~~g~~~~~l 410 (427)
T PRK02889 391 QGGRSVLAAVSSDGRIKQRL 410 (427)
T ss_pred cCCCEEEEEEECCCCceEEe
Confidence 3 33578888888766554
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.3e-05 Score=71.03 Aligned_cols=226 Identities=14% Similarity=0.118 Sum_probs=140.6
Q ss_pred cEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCC--CeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCC
Q psy13635 51 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGT--EMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 128 (357)
Q Consensus 51 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~--~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~ 128 (357)
.|...|.++. ..+.+...-......++++++..|+|+.... ..|+..++.+.. ...+...-....++++.+.+
T Consensus 171 ~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~----~~~~~~~~~~~~~~~~spDg 245 (417)
T TIGR02800 171 ELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ----REKVASFPGMNGAPAFSPDG 245 (417)
T ss_pred eEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC----EEEeecCCCCccceEECCCC
Confidence 4788888763 3444444333466778999999999886544 478989887663 33332222234567888878
Q ss_pred CeEEEEeCC--CCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC--CCeEEEEE
Q psy13635 129 EKLYWTDSE--TNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG--TDRIEVCR 204 (357)
Q Consensus 129 ~~ly~td~~--~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~--~~~I~~~~ 204 (357)
+.|+++... ...|+..++++...+.+.... ......++.+.++.|+++... ...|+.++
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-----------------~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d 308 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGP-----------------GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMD 308 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCEEECCCCC-----------------CCCCCEEECCCCCEEEEEECCCCCceEEEEE
Confidence 888876543 447888888776554442111 011223455556778766432 23799999
Q ss_pred cCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCC
Q psy13635 205 LEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAK 284 (357)
Q Consensus 205 ~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~ 284 (357)
+++.....+.. ........+++|.+..|+++.......+|+.+++++...+.+.... .....++.+.++.|+++...
T Consensus 309 ~~~~~~~~l~~-~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~--~~~~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 309 ADGGEVRRLTF-RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTG--LDESPSFAPNGRMILYATTR 385 (417)
T ss_pred CCCCCEEEeec-CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCC--CCCCceECCCCCEEEEEEeC
Confidence 88766555443 2344567788988888888876533358999999876555443221 22334566677888887654
Q ss_pred C--CeEEEEeCCCCCeEEE
Q psy13635 285 T--DKIEMIDFDGNNRREL 301 (357)
Q Consensus 285 ~--~~I~~~~~dG~~~~~i 301 (357)
. ..++..+.+|.....+
T Consensus 386 ~~~~~l~~~~~~g~~~~~~ 404 (417)
T TIGR02800 386 GGRGVLGLVSTDGRFRARL 404 (417)
T ss_pred CCcEEEEEEECCCceeeEC
Confidence 3 3566667777655443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.7e-05 Score=71.93 Aligned_cols=251 Identities=13% Similarity=0.116 Sum_probs=150.1
Q ss_pred cceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcc---eeE----------------EEEeCCcCCceeE
Q psy13635 62 KPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVG---SKH----------------NVITNGLITPDGL 122 (357)
Q Consensus 62 ~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~---~~~----------------~~~~~~~~~p~gl 122 (357)
....+.+.+.+|+++...+++ .+.++....+.+..+...+.... ... .....+...|.++
T Consensus 58 ~~~~~a~gLe~p~~~~~lP~G-~~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~~~ 136 (399)
T COG2133 58 SVEVVAQGLEHPWGLARLPDG-VLLVTERPTGRLRLISDGGSASPPVSTVPIVLLRGQGGLLDIALSPDFAQGRLVYFGI 136 (399)
T ss_pred ecccccccccCchhheecCCc-eEEEEccCCccEEEecCCCcccccccccceEEeccCCCccceEecccccccceeeeEE
Confidence 344456678899999999876 88888777666665553332110 001 1222334455555
Q ss_pred EEEcCCCeEEEEeCCCCEEEEEEcC-CCc----eEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCC
Q psy13635 123 AIDWLTEKLYWTDSETNKLEVSSLD-GKK----RKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGT 197 (357)
Q Consensus 123 avd~~~~~ly~td~~~~~I~~~~~~-g~~----~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~ 197 (357)
+.- .+.+|.+. ++.+..++ |.. .++++.. +|....++-..|++++.+ +||++-...
T Consensus 137 a~~--~~~~~~~n----~~~~~~~~~g~~~l~~~~~i~~~------------lP~~~~H~g~~l~f~pDG-~Lyvs~G~~ 197 (399)
T COG2133 137 SEP--GGGLYVAN----RVAIGRLPGGDTKLSEPKVIFRG------------IPKGGHHFGGRLVFGPDG-KLYVTTGSN 197 (399)
T ss_pred Eee--cCCceEEE----EEEEEEcCCCccccccccEEeec------------CCCCCCcCcccEEECCCC-cEEEEeCCC
Confidence 554 55556554 33333333 211 1222211 234445677889999766 999986554
Q ss_pred -------------CeEEEEE--------cCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCC----CCeEEEEe---
Q psy13635 198 -------------DRIEVCR--------LEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEK----RPKIERSL--- 249 (357)
Q Consensus 198 -------------~~I~~~~--------~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~----~~~I~~~~--- 249 (357)
++|.+.+ .++...++ ...++.+|.|++++|.+|.||.++.+.. .-.+.++.
T Consensus 198 ~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i-~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i~~G~ 276 (399)
T COG2133 198 GDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSEI-WSYGHRNPQGLAWHPVTGALWTTEHGPDALRGPDELNSIRPGK 276 (399)
T ss_pred CCcccccCccccccceeeeccCcccccCCCCCCcce-EEeccCCccceeecCCCCcEEEEecCCCcccCcccccccccCC
Confidence 2344443 33444333 3347889999999999999999998861 00111111
Q ss_pred ------------cCC------CceEEEeeC-----CCCCceEEEEecCC-------CEEEEEeCCCCeEEEEeCCCC---
Q psy13635 250 ------------LNG------GERVLLVKD-----RLGWPNGITLDVDN-------EKLYWCDAKTDKIEMIDFDGN--- 296 (357)
Q Consensus 250 ------------~dg------~~~~~~~~~-----~l~~P~giaid~~~-------~~lY~~d~~~~~I~~~~~dG~--- 296 (357)
.+| ......... .-..|.|+++- .+ +.+|++..+.-.+.+.+++|.
T Consensus 277 nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy-~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~ 355 (399)
T COG2133 277 NYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFY-TGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKV 355 (399)
T ss_pred ccCCceeccCcccCccccCCCcccccccCCceeeccccccceeEEe-cCCcCccccCcEEEEeecceeEEEeccCCCcce
Confidence 011 111111100 11246899984 33 689999988888888999998
Q ss_pred CeEEEecC-CCCceEEEEEE-CCEEEEEeCC-CCeEEEEeC
Q psy13635 297 NRRELINE-NLPHVFGISLL-GDYVYWTDWQ-RRSIDRVNK 334 (357)
Q Consensus 297 ~~~~i~~~-~~~~p~gia~~-~~~ly~td~~-~~~I~~~~~ 334 (357)
..+.++.. ....|.++++. +|.||+++-. +++|+|+..
T Consensus 356 ~~~~fl~~d~~gR~~dV~v~~DGallv~~D~~~g~i~Rv~~ 396 (399)
T COG2133 356 VLTGFLSGDLGGRPRDVAVAPDGALLVLTDQGDGRILRVSY 396 (399)
T ss_pred EEEEEEecCCCCcccceEECCCCeEEEeecCCCCeEEEecC
Confidence 33334432 23689999998 6899998877 679999986
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=98.53 E-value=7.4e-07 Score=65.36 Aligned_cols=71 Identities=25% Similarity=0.419 Sum_probs=56.9
Q ss_pred ceEEEeCCCCeEEEEeCC-----------------CCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCC
Q psy13635 179 DGVAVDWVARNLYWTDTG-----------------TDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEK 241 (357)
Q Consensus 179 ~glavD~~~~~lY~td~~-----------------~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~ 241 (357)
++++|+..+|.+||||.. ++++.+.++..+..+++.. ++..|+||++++.+..|.+++...
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~-~L~fpNGVals~d~~~vlv~Et~~- 78 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD-GLYFPNGVALSPDESFVLVAETGR- 78 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEE-EESSEEEEEE-TTSSEEEEEEGGG-
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehh-CCCccCeEEEcCCCCEEEEEeccC-
Confidence 478999777999999976 3589999999988888775 689999999999999999999995
Q ss_pred CCeEEEEecCC
Q psy13635 242 RPKIERSLLNG 252 (357)
Q Consensus 242 ~~~I~~~~~dg 252 (357)
.+|.|.-+.|
T Consensus 79 -~Ri~rywl~G 88 (89)
T PF03088_consen 79 -YRILRYWLKG 88 (89)
T ss_dssp -TEEEEEESSS
T ss_pred -ceEEEEEEeC
Confidence 5999998877
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00023 Score=68.78 Aligned_cols=234 Identities=18% Similarity=0.169 Sum_probs=138.2
Q ss_pred CEE-EEEeCCC----CeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCC--CCEEEEEEcCCCceEEEE
Q psy13635 83 SMV-CWTDHGT----EMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSE--TNKLEVSSLDGKKRKVLY 155 (357)
Q Consensus 83 ~~l-y~~d~~~----~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~--~~~I~~~~~~g~~~~~~~ 155 (357)
.+| |+++..+ ..|+..+.+|.. ...+..+-.....+++.+.++.|.++... ..+|+..++.+...+.+.
T Consensus 169 ~ria~v~~~~~~~~~~~i~i~d~dg~~----~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~ 244 (429)
T PRK01742 169 TRIAYVVQKNGGSQPYEVRVADYDGFN----QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA 244 (429)
T ss_pred CEEEEEEEEcCCCceEEEEEECCCCCC----ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe
Confidence 445 6655432 467777888875 33344333345778899888888887543 357988898776544442
Q ss_pred ecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCC--eEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEE
Q psy13635 156 WEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTD--RIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYL 233 (357)
Q Consensus 156 ~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~--~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~L 233 (357)
... ..-..+++.|.+..|+++....+ .|+.+++++.....+.. ........+++|.+..|
T Consensus 245 ~~~-----------------g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~-~~~~~~~~~wSpDG~~i 306 (429)
T PRK01742 245 SFR-----------------GHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTS-GAGNNTEPSWSPDGQSI 306 (429)
T ss_pred cCC-----------------CccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeecc-CCCCcCCEEECCCCCEE
Confidence 110 01124577777778887643333 68888888766655543 22345578889887777
Q ss_pred EEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEE
Q psy13635 234 FWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGIS 313 (357)
Q Consensus 234 y~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia 313 (357)
+++.......+|+..+.++.....+ ... . ...++.+++..|+++.. ..+...++.+...+.+...........+
T Consensus 307 ~f~s~~~g~~~I~~~~~~~~~~~~l-~~~-~--~~~~~SpDG~~ia~~~~--~~i~~~Dl~~g~~~~lt~~~~~~~~~~s 380 (429)
T PRK01742 307 LFTSDRSGSPQVYRMSASGGGASLV-GGR-G--YSAQISADGKTLVMING--DNVVKQDLTSGSTEVLSSTFLDESPSIS 380 (429)
T ss_pred EEEECCCCCceEEEEECCCCCeEEe-cCC-C--CCccCCCCCCEEEEEcC--CCEEEEECCCCCeEEecCCCCCCCceEC
Confidence 7765332236899999887765444 221 1 23566777788877654 4677788866554433322111212233
Q ss_pred EECCEEEEEeCCC-CeEE-EEeCccCceeEEEec
Q psy13635 314 LLGDYVYWTDWQR-RSID-RVNKITGNDREVIIE 345 (357)
Q Consensus 314 ~~~~~ly~td~~~-~~I~-~~~~~~g~~~~~i~~ 345 (357)
.++..|+++.... ..++ .++. +|+....+..
T Consensus 381 PdG~~i~~~s~~g~~~~l~~~~~-~G~~~~~l~~ 413 (429)
T PRK01742 381 PNGIMIIYSSTQGLGKVLQLVSA-DGRFKARLPG 413 (429)
T ss_pred CCCCEEEEEEcCCCceEEEEEEC-CCCceEEccC
Confidence 4456777765433 2233 3454 6777776643
|
|
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=98.50 E-value=9e-05 Score=63.32 Aligned_cols=226 Identities=14% Similarity=0.163 Sum_probs=123.8
Q ss_pred EEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcc-------eeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEc
Q psy13635 74 AAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVG-------SKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSL 146 (357)
Q Consensus 74 ~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-------~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~ 146 (357)
.|..++...+.|||.|...+.+.|.+....... .....+......|+.-++-. ..+....+.
T Consensus 18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~ilpv~~~~q~~~v~~-----------G~kf~i~nw 86 (310)
T KOG4499|consen 18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFILPVEGGPQEFAVGC-----------GSKFVIVNW 86 (310)
T ss_pred CCCceEEecceEEEEEeccCceehhhhhhhheEEEEEecCcceeEEEEecCCCceEEEee-----------cceEEEEEc
Confidence 345577778999999998776666554443200 00112222233344444432 123444455
Q ss_pred CCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCC---------CeEEEEEcCCCceEEEecCC
Q psy13635 147 DGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGT---------DRIEVCRLEGTHRKVLVNTD 217 (357)
Q Consensus 147 ~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~---------~~I~~~~~~g~~~~~~~~~~ 217 (357)
||......+...+-+- .|...-+.-++=-+||.++ -|.--... +.+++- +-|...+.+ ...
T Consensus 87 d~~~~~a~v~~t~~ev-------~~d~kknR~NDgkvdP~Gr-yy~GtMad~~~~le~~~g~Ly~~-~~~h~v~~i-~~~ 156 (310)
T KOG4499|consen 87 DGVSESAKVYRTLFEV-------QPDRKKNRLNDGKVDPDGR-YYGGTMADFGDDLEPIGGELYSW-LAGHQVELI-WNC 156 (310)
T ss_pred ccccceeeeeeecccc-------CchHHhcccccCccCCCCc-eeeeeeccccccccccccEEEEe-ccCCCceee-ehh
Confidence 5543322221110000 0001112334445665443 35432221 122222 223333333 245
Q ss_pred CCCceEEEEeCCCCEEEEEeCCCCCCeEEEEe--cCC---CceEEEeeC------CCCCceEEEEecCCCEEEEEeCCCC
Q psy13635 218 LVEPRAITLSPAHGYLFWSDWNEKRPKIERSL--LNG---GERVLLVKD------RLGWPNGITLDVDNEKLYWCDAKTD 286 (357)
Q Consensus 218 ~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~--~dg---~~~~~~~~~------~l~~P~giaid~~~~~lY~~d~~~~ 286 (357)
+.-|+||+-|.+....|+.|+-. ..|...+ ..+ +++.+++.- +-..|.|++|| .+|+||++-...+
T Consensus 157 v~IsNgl~Wd~d~K~fY~iDsln--~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID-~eG~L~Va~~ng~ 233 (310)
T KOG4499|consen 157 VGISNGLAWDSDAKKFYYIDSLN--YEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTID-TEGNLYVATFNGG 233 (310)
T ss_pred ccCCccccccccCcEEEEEccCc--eEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEc-cCCcEEEEEecCc
Confidence 67799999999989999999984 5884444 444 345555431 34569999999 6999999999999
Q ss_pred eEEEEeCC-CCCeEEEecCCCCceEEEEEEC---CEEEEEeC
Q psy13635 287 KIEMIDFD-GNNRRELINENLPHVFGISLLG---DYVYWTDW 324 (357)
Q Consensus 287 ~I~~~~~d-G~~~~~i~~~~~~~p~gia~~~---~~ly~td~ 324 (357)
+|.++++. |.-..++.- ........++-+ +-+|+|-.
T Consensus 234 ~V~~~dp~tGK~L~eikl-Pt~qitsccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 234 TVQKVDPTTGKILLEIKL-PTPQITSCCFGGKNLDILYVTTA 274 (310)
T ss_pred EEEEECCCCCcEEEEEEc-CCCceEEEEecCCCccEEEEEeh
Confidence 99999985 444444432 234455666654 56888754
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00072 Score=65.24 Aligned_cols=230 Identities=10% Similarity=0.047 Sum_probs=134.9
Q ss_pred CcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCE--E-EEEeCC-CCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEE
Q psy13635 50 KDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSM--V-CWTDHG-TEMISCCTFDGNNVGSKHNVITNGLITPDGLAID 125 (357)
Q Consensus 50 ~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~--l-y~~d~~-~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd 125 (357)
.+|+.+|.+|.. ...+.........-.+.|++.. + |++... ...|+..+++|+. ...+...-......++.
T Consensus 165 ~~l~~~d~dG~~-~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~----~~~lt~~~g~~~~p~wS 239 (428)
T PRK01029 165 GELWSVDYDGQN-LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA----GKKILALQGNQLMPTFS 239 (428)
T ss_pred ceEEEEcCCCCC-ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCC----ceEeecCCCCccceEEC
Confidence 368899998843 3333333223344578887654 3 455443 3479999999875 33333322234567888
Q ss_pred cCCCeEEEEeCC--CCEEEEE--EcCC---CceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC--
Q psy13635 126 WLTEKLYWTDSE--TNKLEVS--SLDG---KKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG-- 196 (357)
Q Consensus 126 ~~~~~ly~td~~--~~~I~~~--~~~g---~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~-- 196 (357)
|.++.|.++... ...|+.. ++++ ...+.+.... .......++.+.+..|+++...
T Consensus 240 PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~----------------~~~~~~p~wSPDG~~Laf~s~~~g 303 (428)
T PRK01029 240 PRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEA----------------FGTQGNPSFSPDGTRLVFVSNKDG 303 (428)
T ss_pred CCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCC----------------CCCcCCeEECCCCCEEEEEECCCC
Confidence 888888887632 3345543 3332 1222222111 1122345677777777766432
Q ss_pred CCeEEEEEcCC--CceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecC
Q psy13635 197 TDRIEVCRLEG--THRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVD 274 (357)
Q Consensus 197 ~~~I~~~~~~g--~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~ 274 (357)
...|++++.++ ...+.+.. ........+.+|.+.+|+++........|+..++++...+.+... .......+..++
T Consensus 304 ~~~ly~~~~~~~g~~~~~lt~-~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~-~~~~~~p~wSpD 381 (428)
T PRK01029 304 RPRIYIMQIDPEGQSPRLLTK-KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS-PENKESPSWAID 381 (428)
T ss_pred CceEEEEECcccccceEEecc-CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC-CCCccceEECCC
Confidence 23788887764 32333332 223345678899878888876543235899999998877766533 223455677767
Q ss_pred CCEEEEEeC--CCCeEEEEeCCCCCeEEEe
Q psy13635 275 NEKLYWCDA--KTDKIEMIDFDGNNRRELI 302 (357)
Q Consensus 275 ~~~lY~~d~--~~~~I~~~~~dG~~~~~i~ 302 (357)
+..|+++.. +...|+.++++|...+.+.
T Consensus 382 G~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 382 SLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 777877643 3457888888887665554
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00036 Score=67.42 Aligned_cols=220 Identities=9% Similarity=0.097 Sum_probs=133.3
Q ss_pred CcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCC--CeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcC
Q psy13635 50 KDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGT--EMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 127 (357)
Q Consensus 50 ~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~--~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~ 127 (357)
.+|+..|.+|.. ...+...-.....+.++|++.+|.++...+ ..|+..++.++. ...+...-..-..+++.+.
T Consensus 184 ~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~----~~~l~~~~g~~~~~~wSPD 258 (429)
T PRK01742 184 YEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA----RKVVASFRGHNGAPAFSPD 258 (429)
T ss_pred EEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc----eEEEecCCCccCceeECCC
Confidence 367788888844 333334344567889999999998875433 469999987763 2333221122335788888
Q ss_pred CCeEEEEeCCC--CEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC--CCeEEEE
Q psy13635 128 TEKLYWTDSET--NKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG--TDRIEVC 203 (357)
Q Consensus 128 ~~~ly~td~~~--~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~--~~~I~~~ 203 (357)
++.|+++.... -.|+.+++++...+.+.... ......++.+.+..|+++... .-.|+..
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~-----------------~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~ 321 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGA-----------------GNNTEPSWSPDGQSILFTSDRSGSPQVYRM 321 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCeEeeccCC-----------------CCcCCEEECCCCCEEEEEECCCCCceEEEE
Confidence 88888865333 36788888776655443211 123456777777777766432 3378888
Q ss_pred EcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeC
Q psy13635 204 RLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDA 283 (357)
Q Consensus 204 ~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~ 283 (357)
+.++...+.+ ... . ...+++|.+..|+++... .+.+.++.+...+.+... . .-...++.+.+..|+++..
T Consensus 322 ~~~~~~~~~l-~~~-~--~~~~~SpDG~~ia~~~~~----~i~~~Dl~~g~~~~lt~~-~-~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 322 SASGGGASLV-GGR-G--YSAQISADGKTLVMINGD----NVVKQDLTSGSTEVLSST-F-LDESPSISPNGIMIIYSST 391 (429)
T ss_pred ECCCCCeEEe-cCC-C--CCccCCCCCCEEEEEcCC----CEEEEECCCCCeEEecCC-C-CCCCceECCCCCEEEEEEc
Confidence 8777655444 211 1 346788887788777542 677788876655444322 1 2234567777777777654
Q ss_pred CC-C-eEEEEeCCCCCeEEE
Q psy13635 284 KT-D-KIEMIDFDGNNRREL 301 (357)
Q Consensus 284 ~~-~-~I~~~~~dG~~~~~i 301 (357)
.. . .++..+.+|...+.+
T Consensus 392 ~g~~~~l~~~~~~G~~~~~l 411 (429)
T PRK01742 392 QGLGKVLQLVSADGRFKARL 411 (429)
T ss_pred CCCceEEEEEECCCCceEEc
Confidence 22 2 234456788776655
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.0025 Score=61.52 Aligned_cols=229 Identities=14% Similarity=0.112 Sum_probs=129.2
Q ss_pred CeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCe---EEEEeC-CCCEEEEEEcCCCceEEEEecCCCCcceeeee
Q psy13635 93 EMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK---LYWTDS-ETNKLEVSSLDGKKRKVLYWEDIDQPRAIASY 168 (357)
Q Consensus 93 ~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~---ly~td~-~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~ 168 (357)
..|+.++.+|.+ ...+..+-......++.|.++. +|++.. +...|++.+++|...+.+....
T Consensus 165 ~~l~~~d~dG~~----~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~---------- 230 (428)
T PRK01029 165 GELWSVDYDGQN----LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQ---------- 230 (428)
T ss_pred ceEEEEcCCCCC----ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCC----------
Confidence 378888888885 2223222222233467776654 345543 3458999999987766654211
Q ss_pred ccCcccccCCceEEEeCCCCeEEEEeCC--CCeEEEE--EcCC---CceEEEecCCCCCceEEEEeCCCCEEEEEeCCCC
Q psy13635 169 KLPTIEVEHPDGVAVDWVARNLYWTDTG--TDRIEVC--RLEG---THRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEK 241 (357)
Q Consensus 169 ~~~~~~~~~p~glavD~~~~~lY~td~~--~~~I~~~--~~~g---~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~ 241 (357)
......++.|.+.+|.++-.. ...++.. ++++ ...+.+...........+++|++..|+++.....
T Consensus 231 -------g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g 303 (428)
T PRK01029 231 -------GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDG 303 (428)
T ss_pred -------CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCC
Confidence 012234666677788776532 2245543 3332 2233343322223345688988777777654322
Q ss_pred CCeEEEEecCCC--ceEEEeeCCCCCceEEEEecCCCEEEEEeCC--CCeEEEEeCCCCCeEEEecCCCCceEEEEE--E
Q psy13635 242 RPKIERSLLNGG--ERVLLVKDRLGWPNGITLDVDNEKLYWCDAK--TDKIEMIDFDGNNRRELINENLPHVFGISL--L 315 (357)
Q Consensus 242 ~~~I~~~~~dg~--~~~~~~~~~l~~P~giaid~~~~~lY~~d~~--~~~I~~~~~dG~~~~~i~~~~~~~p~gia~--~ 315 (357)
..+|+.++.++. ..+.+. .........+..+++.+|+++... ...|+.+++++...+.+... .......++ +
T Consensus 304 ~~~ly~~~~~~~g~~~~~lt-~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~-~~~~~~p~wSpD 381 (428)
T PRK01029 304 RPRIYIMQIDPEGQSPRLLT-KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS-PENKESPSWAID 381 (428)
T ss_pred CceEEEEECcccccceEEec-cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC-CCCccceEECCC
Confidence 358999888643 233332 222233456777788888876543 35799999988777655432 222334444 4
Q ss_pred CCEEEEEeCC--CCeEEEEeCccCceeEEEec
Q psy13635 316 GDYVYWTDWQ--RRSIDRVNKITGNDREVIIE 345 (357)
Q Consensus 316 ~~~ly~td~~--~~~I~~~~~~~g~~~~~i~~ 345 (357)
+..|+++... ...|+.++..+++ .+.+..
T Consensus 382 G~~L~f~~~~~g~~~L~~vdl~~g~-~~~Lt~ 412 (428)
T PRK01029 382 SLHLVYSAGNSNESELYLISLITKK-TRKIVI 412 (428)
T ss_pred CCEEEEEECCCCCceEEEEECCCCC-EEEeec
Confidence 5677765432 3568899985444 444443
|
|
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0011 Score=59.68 Aligned_cols=213 Identities=15% Similarity=0.151 Sum_probs=132.0
Q ss_pred EEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEc----------CCCceEEEEecCCCCcceeeeeccCcccccCC
Q psy13635 109 HNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSL----------DGKKRKVLYWEDIDQPRAIASYKLPTIEVEHP 178 (357)
Q Consensus 109 ~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~----------~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p 178 (357)
..+....+..|.|+++. .+.||.+.. .+|.++.- .+..-...+ ||.... .+.+ ..
T Consensus 41 l~~~~r~F~r~MGl~~~--~~~l~~~t~--~qiw~f~~~~n~l~~~~~~~~~D~~yv------Pr~~~~----TGdi-di 105 (335)
T TIGR03032 41 LDVFERTFPRPMGLAVS--PQSLTLGTR--YQLWRFANVDNLLPAGQTHPGYDRLYV------PRASYV----TGDI-DA 105 (335)
T ss_pred EEEEeeccCccceeeee--CCeEEEEEc--ceeEEcccccccccccccCCCCCeEEe------eeeeee----ccCc-ch
Confidence 55666778899999997 688998873 46776611 111111111 222111 1111 45
Q ss_pred ceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceE--------EEecCCCCCceEEEEeCCCCEEEEEeCCCC-CCeEEEEe
Q psy13635 179 DGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRK--------VLVNTDLVEPRAITLSPAHGYLFWSDWNEK-RPKIERSL 249 (357)
Q Consensus 179 ~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~--------~~~~~~~~~P~giavd~~~g~Ly~~d~~~~-~~~I~~~~ 249 (357)
..+++ .++.+++.+..-+.+...+.+-+... .+..++-=+-+|+|+. .+.--|+|..+.. ...=+|-+
T Consensus 106 Hdia~--~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~-~g~p~yVTa~~~sD~~~gWR~~ 182 (335)
T TIGR03032 106 HDLAL--GAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALD-DGEPRYVTALSQSDVADGWREG 182 (335)
T ss_pred hheee--cCCcEEEEECcceeEEEECCCCccccccCCccccccCccCceeecceeee-CCeEEEEEEeeccCCccccccc
Confidence 66777 47788888888888888877765432 2233333467899998 3345666654422 11223322
Q ss_pred c-CCCce-----EEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCC-CCCeEEEecCCCCceEEEEEECCEEEEE
Q psy13635 250 L-NGGER-----VLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFD-GNNRRELINENLPHVFGISLLGDYVYWT 322 (357)
Q Consensus 250 ~-dg~~~-----~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~d-G~~~~~i~~~~~~~p~gia~~~~~ly~t 322 (357)
. +|+.. .+++.+++..|.+--. .+++||++|++.+.+.+++++ |... .+. .--..|.||++.++.+++.
T Consensus 183 ~~~gG~vidv~s~evl~~GLsmPhSPRW--hdgrLwvldsgtGev~~vD~~~G~~e-~Va-~vpG~~rGL~f~G~llvVg 258 (335)
T TIGR03032 183 RRDGGCVIDIPSGEVVASGLSMPHSPRW--YQGKLWLLNSGRGELGYVDPQAGKFQ-PVA-FLPGFTRGLAFAGDFAFVG 258 (335)
T ss_pred ccCCeEEEEeCCCCEEEcCccCCcCCcE--eCCeEEEEECCCCEEEEEcCCCCcEE-EEE-ECCCCCcccceeCCEEEEE
Confidence 2 22111 1233467888888888 589999999999999999997 5443 343 3445899999998888886
Q ss_pred eCCCC-------------------eEEEEeCccCceeEEE
Q psy13635 323 DWQRR-------------------SIDRVNKITGNDREVI 343 (357)
Q Consensus 323 d~~~~-------------------~I~~~~~~~g~~~~~i 343 (357)
-++.+ .|..+|..+|.....+
T Consensus 259 mSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l 298 (335)
T TIGR03032 259 LSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWL 298 (335)
T ss_pred eccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEE
Confidence 55432 3566777777755543
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >smart00135 LY Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.8e-06 Score=54.27 Aligned_cols=40 Identities=43% Similarity=0.809 Sum_probs=36.4
Q ss_pred EeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCC
Q psy13635 258 LVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNN 297 (357)
Q Consensus 258 ~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~ 297 (357)
++..++..|+|+++|+.+++|||+|...+.|.+++++|++
T Consensus 3 ~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~~ 42 (43)
T smart00135 3 LLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN 42 (43)
T ss_pred EEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCCC
Confidence 4456789999999999999999999999999999999975
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. |
| >smart00135 LY Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.6e-06 Score=53.57 Aligned_cols=40 Identities=45% Similarity=0.987 Sum_probs=36.3
Q ss_pred EEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCc
Q psy13635 111 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKK 150 (357)
Q Consensus 111 ~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~ 150 (357)
++..++..|.|+|+||.+++|||+|...+.|.+++++|..
T Consensus 3 ~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~~ 42 (43)
T smart00135 3 LLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN 42 (43)
T ss_pred EEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCCC
Confidence 4556888999999999999999999999999999999874
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. |
| >COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0004 Score=65.11 Aligned_cols=215 Identities=16% Similarity=0.172 Sum_probs=124.2
Q ss_pred EEEEeCCcEEEEEcCCC---CcceEeccC-----CCcEEEEEEEccCCEEEEEeCCC-------------CeEEEEEcCC
Q psy13635 44 LLFATSKDIRIANLSRP---LKPVTIIKD-----LEEGAAIDYYYKKSMVCWTDHGT-------------EMISCCTFDG 102 (357)
Q Consensus 44 l~~~~~~~i~~~~~~~~---~~~~~~~~~-----~~~~~~i~~d~~~~~ly~~d~~~-------------~~I~~~~~~g 102 (357)
++.++...+.+++ .+. .....+..+ ...-..|.|++++ +||++=-.. ++|.+...++
T Consensus 143 ~~~~n~~~~~~~~-~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG-~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~ 220 (399)
T COG2133 143 LYVANRVAIGRLP-GGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDG-KLYVTTGSNGDPALAQDNVSLAGKVLRIDRAG 220 (399)
T ss_pred ceEEEEEEEEEcC-CCccccccccEEeecCCCCCCcCcccEEECCCC-cEEEEeCCCCCcccccCccccccceeeeccCc
Confidence 5556665566666 231 112222222 3345678999865 999983332 3455555444
Q ss_pred CCc----ceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCC
Q psy13635 103 NNV----GSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHP 178 (357)
Q Consensus 103 ~~~----~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p 178 (357)
.-. ....++...++.+|.|+++++.++.||.++.+...+ .-+.+...+ . +.+...+|
T Consensus 221 ~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~----~~~Deln~i-~--------------~G~nYGWP 281 (399)
T COG2133 221 IIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDAL----RGPDELNSI-R--------------PGKNYGWP 281 (399)
T ss_pred ccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCCCcc----cCccccccc-c--------------cCCccCCc
Confidence 321 112568888999999999999999999999775444 111111111 0 01223455
Q ss_pred ceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEec-----CCCCCceEEEEeCCC------CEEEEEeCCCCCCeEEE
Q psy13635 179 DGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVN-----TDLVEPRAITLSPAH------GYLFWSDWNEKRPKIER 247 (357)
Q Consensus 179 ~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~-----~~~~~P~giavd~~~------g~Ly~~d~~~~~~~I~~ 247 (357)
..||.....++.. .++........ ..-..|.|+++-.-+ +.+|++..+.. .+.+
T Consensus 282 ----------~~~~G~~~~g~~~---~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lfV~~hgsw--~~~~ 346 (399)
T COG2133 282 ----------YAYFGQNYDGRAI---PDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLFVGAHGSW--PVLR 346 (399)
T ss_pred ----------eeccCcccCcccc---CCCcccccccCCceeeccccccceeEEecCCcCccccCcEEEEeecce--eEEE
Confidence 2233221111111 11222111111 123467899987422 68999998853 6888
Q ss_pred EecCCC---ceEEEeeC-CCCCceEEEEecCCCEEEEEeCC-CCeEEEEeCCC
Q psy13635 248 SLLNGG---ERVLLVKD-RLGWPNGITLDVDNEKLYWCDAK-TDKIEMIDFDG 295 (357)
Q Consensus 248 ~~~dg~---~~~~~~~~-~l~~P~giaid~~~~~lY~~d~~-~~~I~~~~~dG 295 (357)
.+.+|. ..+..+.. .-..|.++++. .+|.||+++.. +++|+|+..++
T Consensus 347 ~~~~g~~~~~~~~fl~~d~~gR~~dV~v~-~DGallv~~D~~~g~i~Rv~~~~ 398 (399)
T COG2133 347 LRPDGNYKVVLTGFLSGDLGGRPRDVAVA-PDGALLVLTDQGDGRILRVSYAG 398 (399)
T ss_pred eccCCCcceEEEEEEecCCCCcccceEEC-CCCeEEEeecCCCCeEEEecCCC
Confidence 888887 33334432 22689999998 68888888866 67999998765
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0076 Score=53.52 Aligned_cols=257 Identities=15% Similarity=0.131 Sum_probs=138.7
Q ss_pred CeEEEEEe-CCcEEEEEcCCCCcceEecc-CC-CcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcC
Q psy13635 41 AQMLLFAT-SKDIRIANLSRPLKPVTIIK-DL-EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLI 117 (357)
Q Consensus 41 ~~~l~~~~-~~~i~~~~~~~~~~~~~~~~-~~-~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 117 (357)
+.+.+++. +..++++|++...+.++.-. +. +-..++++ .++..|++|...+- ..+++.... ..++.....
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgf-Livdvsdps----sP~lagrya 168 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGF-LIVDVSDPS----SPQLAGRYA 168 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcE-EEEECCCCC----Cceeeeeec
Confidence 45677777 45699999988666665532 22 33555555 47999999986553 344444332 222222222
Q ss_pred Cc----eeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEE
Q psy13635 118 TP----DGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWT 193 (357)
Q Consensus 118 ~p----~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~t 193 (357)
.| +.+++. ++.-|+++.+.+ +..++.......++..+-- ..|.--.+-...++.|.+
T Consensus 169 ~~~~d~~~v~IS--Gn~AYvA~~d~G-L~ivDVSnp~sPvli~~~n----------------~g~g~~sv~vsdnr~y~v 229 (370)
T COG5276 169 LPGGDTHDVAIS--GNYAYVAWRDGG-LTIVDVSNPHSPVLIGSYN----------------TGPGTYSVSVSDNRAYLV 229 (370)
T ss_pred cCCCCceeEEEe--cCeEEEEEeCCC-eEEEEccCCCCCeEEEEEe----------------cCCceEEEEecCCeeEEE
Confidence 23 456775 788898877554 3444444433333332111 122222333357788888
Q ss_pred eCCCCeEEEEEcCCCceEEEe-cCCCCCceEE---EEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEE
Q psy13635 194 DTGTDRIEVCRLEGTHRKVLV-NTDLVEPRAI---TLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGI 269 (357)
Q Consensus 194 d~~~~~I~~~~~~g~~~~~~~-~~~~~~P~gi---avd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~gi 269 (357)
+...+ +...+.++.....+. .-....|.++ .+. +.+.|++|.......|-..+..+.....-+.....+..||
T Consensus 230 vy~eg-vlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs--~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi 306 (370)
T COG5276 230 VYDEG-VLIVDVSGPSSPTVFGSYETSNPVSISTVPVS--GEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGI 306 (370)
T ss_pred Ecccc-eEEEecCCCCCceEeeccccCCcccccceecc--cceeeeeccccCceeEeccCCCCCchhccccCCCccccce
Confidence 87654 556666665433333 2234566666 454 5799999976322233333333322221122223456788
Q ss_pred EEecCCCEEEEEeCCCCeEEEEeCCC-CCeEEEecCCCCceEEEEEECCEEEEEeCCCCeE
Q psy13635 270 TLDVDNEKLYWCDAKTDKIEMIDFDG-NNRRELINENLPHVFGISLLGDYVYWTDWQRRSI 329 (357)
Q Consensus 270 aid~~~~~lY~~d~~~~~I~~~~~dG-~~~~~i~~~~~~~p~gia~~~~~ly~td~~~~~I 329 (357)
.. .++.+|++|..++.+.-+..-. .+.+ ...........+.++...+|.+|+..+..
T Consensus 307 ~a--y~~y~yiadkn~g~vV~~s~~s~m~~~-~g~~ti~~s~~v~~~~q~~y~~d~~~gl~ 364 (370)
T COG5276 307 RA--YGNYNYIADKNTGAVVDASPPSMMDKR-PGRPTIGQSCDVSVDTQIIYSTDYNGGLS 364 (370)
T ss_pred EE--ecCeeEeccCCceEEEeCCChhhcccc-cCcceEeeecceEEEeeEEEEeecCCCEE
Confidence 87 6899999998766554332211 1111 00011223344556656899999887653
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0043 Score=54.89 Aligned_cols=157 Identities=17% Similarity=0.160 Sum_probs=105.2
Q ss_pred CceEEEeCCCCeEEEEeCCCC--eEEEEEcCCCce-EEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCc
Q psy13635 178 PDGVAVDWVARNLYWTDTGTD--RIEVCRLEGTHR-KVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGE 254 (357)
Q Consensus 178 p~glavD~~~~~lY~td~~~~--~I~~~~~~g~~~-~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~ 254 (357)
-.||.++ .++.||-+....+ +|.+.+++.... ...--..--.-.||++- +++||.-.|.. +.....+.+.-.
T Consensus 47 TQGL~~~-~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~--~~~f~yd~~tl~ 121 (264)
T PF05096_consen 47 TQGLEFL-DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKE--GTGFVYDPNTLK 121 (264)
T ss_dssp EEEEEEE-ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSS--SEEEEEETTTTE
T ss_pred CccEEec-CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecC--CeEEEEccccce
Confidence 4688885 3789999887665 899999885443 22222223456799998 68999999995 599999987544
Q ss_pred eEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCC-CeEEEecCC----CCceEEEEEECCEEEEEeCCCCeE
Q psy13635 255 RVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGN-NRRELINEN----LPHVFGISLLGDYVYWTDWQRRSI 329 (357)
Q Consensus 255 ~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~-~~~~i~~~~----~~~p~gia~~~~~ly~td~~~~~I 329 (357)
...-+.- -...-||+-| +..||.+|. +.+++..|+..- ..+.+.... .....-|.+.+|.||---|.+..|
T Consensus 122 ~~~~~~y-~~EGWGLt~d--g~~Li~SDG-S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I 197 (264)
T PF05096_consen 122 KIGTFPY-PGEGWGLTSD--GKRLIMSDG-SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRI 197 (264)
T ss_dssp EEEEEE--SSS--EEEEC--SSCEEEE-S-SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEE
T ss_pred EEEEEec-CCcceEEEcC--CCEEEEECC-ccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeE
Confidence 4333222 2466899964 788999884 789999998643 222222212 334456788899999999999999
Q ss_pred EEEeCccCceeEEE
Q psy13635 330 DRVNKITGNDREVI 343 (357)
Q Consensus 330 ~~~~~~~g~~~~~i 343 (357)
.++|+.+|+....+
T Consensus 198 ~~Idp~tG~V~~~i 211 (264)
T PF05096_consen 198 VRIDPETGKVVGWI 211 (264)
T ss_dssp EEEETTT-BEEEEE
T ss_pred EEEeCCCCeEEEEE
Confidence 99999999988876
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.011 Score=54.24 Aligned_cols=273 Identities=13% Similarity=0.057 Sum_probs=151.2
Q ss_pred cEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCC---------CCeEEEEEcCCCCcceeEEEEeCC-----c
Q psy13635 51 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG---------TEMISCCTFDGNNVGSKHNVITNG-----L 116 (357)
Q Consensus 51 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~---------~~~I~~~~~~g~~~~~~~~~~~~~-----~ 116 (357)
.+..+|.+..+-.-.+...+... +.++++...+|.++.. ++.|...+...-... .+..+... .
T Consensus 18 rv~viD~d~~k~lGmi~~g~~~~--~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~-~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 18 RVYVIDADSGKLLGMIDTGFLGN--VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPT-GEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEETTTTEEEEEEEEESSEE--EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEE-EEEEETTS-B--BS
T ss_pred eEEEEECCCCcEEEEeecccCCc--eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCccc-ceEecCCcchheec
Confidence 46677776633222222233222 5568888888877542 123555666555321 12233322 2
Q ss_pred CCceeEEEEcCCCeEEEEeC-CCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeC
Q psy13635 117 ITPDGLAIDWLTEKLYWTDS-ETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDT 195 (357)
Q Consensus 117 ~~p~glavd~~~~~ly~td~-~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~ 195 (357)
..+.-+++...++.+|+.+. -...|.++++..+....-+. .|.+.-+=|..+.=|.+-.
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~--------------------~PGC~~iyP~~~~~F~~lC 154 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEID--------------------TPGCWLIYPSGNRGFSMLC 154 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEE--------------------GTSEEEEEEEETTEEEEEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeec--------------------CCCEEEEEecCCCceEEEe
Confidence 45677888878999999884 46789999987765422221 2333222222222355666
Q ss_pred CCCeEEEEEcC--CCceEEEe--cCCCCCc--eEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCC-------
Q psy13635 196 GTDRIEVCRLE--GTHRKVLV--NTDLVEP--RAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDR------- 262 (357)
Q Consensus 196 ~~~~I~~~~~~--g~~~~~~~--~~~~~~P--~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~------- 262 (357)
+.+++..+.+| |+...... ......| ..=+.+..++++||.... +.|+.+++.|......-.-.
T Consensus 155 ~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~---G~v~~~dlsg~~~~~~~~~~~~t~~e~ 231 (342)
T PF06433_consen 155 GDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYE---GNVYSADLSGDSAKFGKPWSLLTDAEK 231 (342)
T ss_dssp TTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTT---SEEEEEEETTSSEEEEEEEESS-HHHH
T ss_pred cCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecC---CEEEEEeccCCcccccCcccccCcccc
Confidence 67788877776 44332111 1111222 111233456789987766 69999999988755443211
Q ss_pred --CCCce---EEEEecCCCEEEEEeC----CC-----CeEEEEeCCCCCeEEEecCCCCceE-EEEEEC---CEEEEEeC
Q psy13635 263 --LGWPN---GITLDVDNEKLYWCDA----KT-----DKIEMIDFDGNNRRELINENLPHVF-GISLLG---DYVYWTDW 324 (357)
Q Consensus 263 --l~~P~---giaid~~~~~lY~~d~----~~-----~~I~~~~~dG~~~~~i~~~~~~~p~-gia~~~---~~ly~td~ 324 (357)
--.|- -+|++...++||+.-. ++ ..||.+|+....+..-+. +.+|. +|++.. -.||-++.
T Consensus 232 ~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~--l~~~~~Si~Vsqd~~P~L~~~~~ 309 (342)
T PF06433_consen 232 ADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP--LEHPIDSIAVSQDDKPLLYALSA 309 (342)
T ss_dssp HTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE--EEEEESEEEEESSSS-EEEEEET
T ss_pred ccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe--CCCccceEEEccCCCcEEEEEcC
Confidence 11242 3788888999999752 11 258999887655433332 33443 777763 47888888
Q ss_pred CCCeEEEEeCccCceeEEEecccCCce
Q psy13635 325 QRRSIDRVNKITGNDREVIIERSCTGV 351 (357)
Q Consensus 325 ~~~~I~~~~~~~g~~~~~i~~~l~~p~ 351 (357)
..+.+..+|..+|+....+-+-...|.
T Consensus 310 ~~~~l~v~D~~tGk~~~~~~~lG~~~~ 336 (342)
T PF06433_consen 310 GDGTLDVYDAATGKLVRSIEQLGETPT 336 (342)
T ss_dssp TTTEEEEEETTT--EEEEE---SSS--
T ss_pred CCCeEEEEeCcCCcEEeehhccCCCce
Confidence 888999999989988877765444443
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.013 Score=52.08 Aligned_cols=226 Identities=14% Similarity=0.160 Sum_probs=122.4
Q ss_pred EEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEe-CCc-CCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEE
Q psy13635 77 DYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT-NGL-ITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVL 154 (357)
Q Consensus 77 ~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~-~~~-~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~ 154 (357)
|+...+++.|++|..++ +..+++..-.. .+.+. -+. ....++.+ .++..|++|...+ ...++.......++
T Consensus 91 Dv~vse~yvyvad~ssG-L~IvDIS~P~s---P~~~~~lnt~gyaygv~v--sGn~aYVadlddg-fLivdvsdpssP~l 163 (370)
T COG5276 91 DVRVSEEYVYVADWSSG-LRIVDISTPDS---PTLIGFLNTDGYAYGVYV--SGNYAYVADLDDG-FLIVDVSDPSSPQL 163 (370)
T ss_pred eeEecccEEEEEcCCCc-eEEEeccCCCC---cceeccccCCceEEEEEe--cCCEEEEeeccCc-EEEEECCCCCCcee
Confidence 44456899999997665 44455443320 11111 111 22344444 4888999997544 33334332222222
Q ss_pred EecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEE
Q psy13635 155 YWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLF 234 (357)
Q Consensus 155 ~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly 234 (357)
.... + ..-.....++|. +++-|+++...+ +...+.......+++..--..|.--.+.+...+.|
T Consensus 164 agry-a------------~~~~d~~~v~IS--Gn~AYvA~~d~G-L~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y 227 (370)
T COG5276 164 AGRY-A------------LPGGDTHDVAIS--GNYAYVAWRDGG-LTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAY 227 (370)
T ss_pred eeee-c------------cCCCCceeEEEe--cCeEEEEEeCCC-eEEEEccCCCCCeEEEEEecCCceEEEEecCCeeE
Confidence 1110 0 000122456664 788899887655 44444433333333332212333333444467899
Q ss_pred EEeCCCCCCeEEEEecCCCceEEEe-eCCCCCceEE---EEecCCCEEEEEeCCCCeEEEEeC---CCCCeEEEecCCCC
Q psy13635 235 WSDWNEKRPKIERSLLNGGERVLLV-KDRLGWPNGI---TLDVDNEKLYWCDAKTDKIEMIDF---DGNNRRELINENLP 307 (357)
Q Consensus 235 ~~d~~~~~~~I~~~~~dg~~~~~~~-~~~l~~P~gi---aid~~~~~lY~~d~~~~~I~~~~~---dG~~~~~i~~~~~~ 307 (357)
.++..+ .+.-++.++....+++ .-+...|.++ .+ .+.+.|++|...+ +..++. .+.....-+.....
T Consensus 228 ~vvy~e---gvlivd~s~~ssp~~~gsyet~~p~~~s~v~V--s~~~~Yvadga~g-l~~idisnp~spfl~ss~~t~g~ 301 (370)
T COG5276 228 LVVYDE---GVLIVDVSGPSSPTVFGSYETSNPVSISTVPV--SGEYAYVADGAKG-LPIIDISNPPSPFLSSSLDTAGY 301 (370)
T ss_pred EEEccc---ceEEEecCCCCCceEeeccccCCcccccceec--ccceeeeeccccC-ceeEeccCCCCCchhccccCCCc
Confidence 999874 5777777776544443 3345667665 55 7899999996543 233332 22222111112234
Q ss_pred ceEEEEEECCEEEEEeCCCCeEEE
Q psy13635 308 HVFGISLLGDYVYWTDWQRRSIDR 331 (357)
Q Consensus 308 ~p~gia~~~~~ly~td~~~~~I~~ 331 (357)
+..||+..++.+|++|-..+.|.-
T Consensus 302 ~a~gi~ay~~y~yiadkn~g~vV~ 325 (370)
T COG5276 302 QAAGIRAYGNYNYIADKNTGAVVD 325 (370)
T ss_pred cccceEEecCeeEeccCCceEEEe
Confidence 678999999999999988777643
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0029 Score=62.32 Aligned_cols=227 Identities=13% Similarity=0.058 Sum_probs=134.0
Q ss_pred EccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEE--cCCCeEEE-----------------EeCCCC
Q psy13635 79 YYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAID--WLTEKLYW-----------------TDSETN 139 (357)
Q Consensus 79 d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd--~~~~~ly~-----------------td~~~~ 139 (357)
.+++..||+-|..+.+|-|++++--.+. +.+...+.....|+.+. +.++.+|- ++...+
T Consensus 138 ~ydGr~~findk~n~Rvari~l~~~~~~--~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~ 215 (635)
T PRK02888 138 TYDGRYLFINDKANTRVARIRLDVMKCD--KITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRS 215 (635)
T ss_pred ccceeEEEEecCCCcceEEEECccEeec--eeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeE
Confidence 3556788998999999999999876421 22333455566677665 34444433 222223
Q ss_pred EEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC---CCeEEEEEcCCCceEEEecC
Q psy13635 140 KLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG---TDRIEVCRLEGTHRKVLVNT 216 (357)
Q Consensus 140 ~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~---~~~I~~~~~~g~~~~~~~~~ 216 (357)
.+.+++.+.. ++.. .+. .. ..|..+++++.++.+|++..+ ...+..++.+.......+.
T Consensus 216 ~vSvID~etm--eV~~--------qV~-----Vd--gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn- 277 (635)
T PRK02888 216 LFTAVDAETM--EVAW--------QVM-----VD--GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN- 277 (635)
T ss_pred EEEEEECccc--eEEE--------EEE-----eC--CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEc-
Confidence 3333333321 1111 111 11 278999999989999998632 2344444432222111111
Q ss_pred CCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCC-----CceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEE
Q psy13635 217 DLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNG-----GERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMI 291 (357)
Q Consensus 217 ~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg-----~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~ 291 (357)
.+..-++-+.....|+. + .+|-.++... ......+.. -..|.|+++++++.++|++...++.+..+
T Consensus 278 ---i~~iea~vkdGK~~~V~--g---n~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVI 348 (635)
T PRK02888 278 ---IARIEEAVKAGKFKTIG--G---SKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVI 348 (635)
T ss_pred ---hHHHHHhhhCCCEEEEC--C---CEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEE
Confidence 11111222233455552 1 3677777554 233333333 37899999999999999999999999999
Q ss_pred eCCCCC---------eEEEec--CCCCceEEEEEEC-CEEEEEeCCCCeEEEEeC
Q psy13635 292 DFDGNN---------RRELIN--ENLPHVFGISLLG-DYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 292 ~~dG~~---------~~~i~~--~~~~~p~gia~~~-~~ly~td~~~~~I~~~~~ 334 (357)
+..... +..+.. +....|.-.++++ |+.|.|-.-...|.+.+.
T Consensus 349 Dv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~ 403 (635)
T PRK02888 349 DVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNI 403 (635)
T ss_pred EChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEeh
Confidence 986532 122222 2355888888885 789999888888888775
|
|
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=97.85 E-value=5e-05 Score=42.95 Aligned_cols=28 Identities=18% Similarity=0.703 Sum_probs=25.2
Q ss_pred CCCceEEEEecCCCEEEEEeCCCCeEEEE
Q psy13635 263 LGWPNGITLDVDNEKLYWCDAKTDKIEMI 291 (357)
Q Consensus 263 l~~P~giaid~~~~~lY~~d~~~~~I~~~ 291 (357)
+..|.||++| .+|+||++|.++++|+++
T Consensus 1 f~~P~gvav~-~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVD-SDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEe-CCCCEEEEECCCCEEEEC
Confidence 4689999999 899999999999999864
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.02 Score=50.10 Aligned_cols=181 Identities=10% Similarity=0.097 Sum_probs=106.9
Q ss_pred CCeEEEEeCCCCEEEEEEc-CCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEE-c
Q psy13635 128 TEKLYWTDSETNKLEVSSL-DGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCR-L 205 (357)
Q Consensus 128 ~~~ly~td~~~~~I~~~~~-~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~-~ 205 (357)
++.+|+++ ..+.++.++. +|+..-..-. .+.+..+ .+++ ++.+|+.... +++..++ .
T Consensus 36 ~~~v~~~~-~~~~l~~~d~~tG~~~W~~~~---------------~~~~~~~--~~~~--~~~v~v~~~~-~~l~~~d~~ 94 (238)
T PF13360_consen 36 GGRVYVAS-GDGNLYALDAKTGKVLWRFDL---------------PGPISGA--PVVD--GGRVYVGTSD-GSLYALDAK 94 (238)
T ss_dssp TTEEEEEE-TTSEEEEEETTTSEEEEEEEC---------------SSCGGSG--EEEE--TTEEEEEETT-SEEEEEETT
T ss_pred CCEEEEEc-CCCEEEEEECCCCCEEEEeec---------------cccccce--eeec--ccccccccce-eeeEecccC
Confidence 78888885 5788999997 5543322211 1111122 2333 7788888744 4888888 5
Q ss_pred CCCceEEE-ecC----CCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCce-EEEeeCCCC--C--------ceEE
Q psy13635 206 EGTHRKVL-VNT----DLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGER-VLLVKDRLG--W--------PNGI 269 (357)
Q Consensus 206 ~g~~~~~~-~~~----~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~-~~~~~~~l~--~--------P~gi 269 (357)
+|+..-.. ... ....+...+++ ++.+|+.... +.|..+++..+.. ...-...-. . ...+
T Consensus 95 tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~ 169 (238)
T PF13360_consen 95 TGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGTSS---GKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSP 169 (238)
T ss_dssp TSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEETC---SEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEE
T ss_pred CcceeeeeccccccccccccccCceEe--cCEEEEEecc---CcEEEEecCCCcEEEEeecCCCCCCcceeeecccccce
Confidence 67665553 211 12234555666 5788888864 5888888664433 222111100 1 1233
Q ss_pred EEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEE-EEEECCEEEEEeCCCCeEEEEeCccCcee
Q psy13635 270 TLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFG-ISLLGDYVYWTDWQRRSIDRVNKITGNDR 340 (357)
Q Consensus 270 aid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~g-ia~~~~~ly~td~~~~~I~~~~~~~g~~~ 340 (357)
.+ .++.+|++..... +..++....... -.. ....+.+ ....++.||+++ ..+.|+.+++.+|+..
T Consensus 170 ~~--~~~~v~~~~~~g~-~~~~d~~tg~~~-w~~-~~~~~~~~~~~~~~~l~~~~-~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 170 VI--SDGRVYVSSGDGR-VVAVDLATGEKL-WSK-PISGIYSLPSVDGGTLYVTS-SDGRLYALDLKTGKVV 235 (238)
T ss_dssp EC--CTTEEEEECCTSS-EEEEETTTTEEE-EEE-CSS-ECECEECCCTEEEEEE-TTTEEEEEETTTTEEE
T ss_pred EE--ECCEEEEEcCCCe-EEEEECCCCCEE-EEe-cCCCccCCceeeCCEEEEEe-CCCEEEEEECCCCCEE
Confidence 33 4669999886554 556677655543 222 2555666 566789999999 7799999999888864
|
... |
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.045 Score=49.86 Aligned_cols=248 Identities=13% Similarity=0.079 Sum_probs=149.4
Q ss_pred ccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEc
Q psy13635 67 IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSL 146 (357)
Q Consensus 67 ~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~ 146 (357)
...++-...+++||. +.-|.+...++.|...++..+. -...+.......+|++|....-.|| +....+.|...++
T Consensus 148 ~gHlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~---LkltltGhi~~vr~vavS~rHpYlF-s~gedk~VKCwDL 222 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQ---LKLTLTGHIETVRGVAVSKRHPYLF-SAGEDKQVKCWDL 222 (460)
T ss_pred hhccceEEEEeeCCC-ceeEEecCCCceeEEEEcccCe---EEEeecchhheeeeeeecccCceEE-EecCCCeeEEEec
Confidence 346677889999995 6667778888889999988763 1334444567789999996555554 5556788888888
Q ss_pred CCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEE
Q psy13635 147 DGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITL 226 (357)
Q Consensus 147 ~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giav 226 (357)
.-...-.-.. +-+....+|++.|.-+.| ++......+.+-|+..+.......+.-.....+..
T Consensus 223 e~nkvIR~Yh----------------GHlS~V~~L~lhPTldvl-~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~ 285 (460)
T KOG0285|consen 223 EYNKVIRHYH----------------GHLSGVYCLDLHPTLDVL-VTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMC 285 (460)
T ss_pred hhhhhHHHhc----------------cccceeEEEeccccceeE-EecCCcceEEEeeecccceEEEecCCCCcceeEEe
Confidence 6443211111 122356677777665444 46666667777787776655555444344456666
Q ss_pred eCCCCEEEEEeCCCCCCeEEEEecCCC-ceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeC-CCCCeEEEecC
Q psy13635 227 SPAHGYLFWSDWNEKRPKIERSLLNGG-ERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDF-DGNNRRELINE 304 (357)
Q Consensus 227 d~~~g~Ly~~d~~~~~~~I~~~~~dg~-~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~-dG~~~~~i~~~ 304 (357)
.|.++.+|-.... +.|.--++.-+ ...++. ..-....++++.| ...+| +.+..+.|...++ .|..... +.+
T Consensus 286 ~~~dpqvit~S~D---~tvrlWDl~agkt~~tlt-~hkksvral~lhP-~e~~f-ASas~dnik~w~~p~g~f~~n-lsg 358 (460)
T KOG0285|consen 286 QPTDPQVITGSHD---STVRLWDLRAGKTMITLT-HHKKSVRALCLHP-KENLF-ASASPDNIKQWKLPEGEFLQN-LSG 358 (460)
T ss_pred ecCCCceEEecCC---ceEEEeeeccCceeEeee-cccceeeEEecCC-chhhh-hccCCccceeccCCccchhhc-ccc
Confidence 6666777766555 34554554332 233332 2223456777764 33444 4445556666654 5655544 222
Q ss_pred CCCceEEEEEECCEEEEEeCCCCeEEEEeCccCceeEEE
Q psy13635 305 NLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVI 343 (357)
Q Consensus 305 ~~~~p~gia~~~~~ly~td~~~~~I~~~~~~~g~~~~~i 343 (357)
+-.....+++.++.+|++-..++.+..-+-.+|-+.+.+
T Consensus 359 h~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~ 397 (460)
T KOG0285|consen 359 HNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRG 397 (460)
T ss_pred ccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccc
Confidence 333345566667777887777777766665566555444
|
|
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00021 Score=40.37 Aligned_cols=28 Identities=29% Similarity=0.536 Sum_probs=25.0
Q ss_pred cCCceeEEEEcCCCeEEEEeCCCCEEEEE
Q psy13635 116 LITPDGLAIDWLTEKLYWTDSETNKLEVS 144 (357)
Q Consensus 116 ~~~p~glavd~~~~~ly~td~~~~~I~~~ 144 (357)
+..|.|+|+| .+++||++|.++++|+++
T Consensus 1 f~~P~gvav~-~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVD-SDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEe-CCCCEEEEECCCCEEEEC
Confidence 4579999999 699999999999999864
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.05 Score=48.26 Aligned_cols=194 Identities=14% Similarity=0.162 Sum_probs=125.2
Q ss_pred CCcEEEEEEEccCCEEEEEeCCCC--eEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcC
Q psy13635 70 LEEGAAIDYYYKKSMVCWTDHGTE--MISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD 147 (357)
Q Consensus 70 ~~~~~~i~~d~~~~~ly~~d~~~~--~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~ 147 (357)
-....|+.|.. ++.||-+...-+ .|+++++++... ....-.+.-..-+|+++- +++||---.-++...+.+.+
T Consensus 44 ~aFTQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~--~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~ 118 (264)
T PF05096_consen 44 TAFTQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKV--LQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPN 118 (264)
T ss_dssp T-EEEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSE--EEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETT
T ss_pred cccCccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcE--EEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccc
Confidence 34667888853 689999977544 799999987641 223333333467999997 78999999889999999987
Q ss_pred CCce-EEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCC-ceEEE-ec-C--CCCCc
Q psy13635 148 GKKR-KVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGT-HRKVL-VN-T--DLVEP 221 (357)
Q Consensus 148 g~~~-~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~-~~~~~-~~-~--~~~~P 221 (357)
.-.. ..+--. ...-||+-| +..||.+|. +++++..|+..- ..+.+ +. . ....-
T Consensus 119 tl~~~~~~~y~------------------~EGWGLt~d--g~~Li~SDG-S~~L~~~dP~~f~~~~~i~V~~~g~pv~~L 177 (264)
T PF05096_consen 119 TLKKIGTFPYP------------------GEGWGLTSD--GKRLIMSDG-SSRLYFLDPETFKEVRTIQVTDNGRPVSNL 177 (264)
T ss_dssp TTEEEEEEE-S------------------SS--EEEEC--SSCEEEE-S-SSEEEEE-TTT-SEEEEEE-EETTEE---E
T ss_pred cceEEEEEecC------------------CcceEEEcC--CCEEEEECC-ccceEEECCcccceEEEEEEEECCEECCCc
Confidence 5322 222111 245788876 678998887 478999887642 22221 11 1 13344
Q ss_pred eEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeC----------C-----CCCceEEEEecCCCEEEEEeCCCC
Q psy13635 222 RAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKD----------R-----LGWPNGITLDVDNEKLYWCDAKTD 286 (357)
Q Consensus 222 ~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~----------~-----l~~P~giaid~~~~~lY~~d~~~~ 286 (357)
+-|..- +|.||---|.+. .|.++++..+.....+.- . ..-.+|||.|+..+++|+|-..=.
T Consensus 178 NELE~i--~G~IyANVW~td--~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp 253 (264)
T PF05096_consen 178 NELEYI--NGKIYANVWQTD--RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWP 253 (264)
T ss_dssp EEEEEE--TTEEEEEETTSS--EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-S
T ss_pred EeEEEE--cCEEEEEeCCCC--eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCC
Confidence 556655 699998889864 999999987777665521 0 123689999999999999987777
Q ss_pred eEEEEeC
Q psy13635 287 KIEMIDF 293 (357)
Q Consensus 287 ~I~~~~~ 293 (357)
+++.+.+
T Consensus 254 ~lyeV~l 260 (264)
T PF05096_consen 254 KLYEVKL 260 (264)
T ss_dssp EEEEEEE
T ss_pred ceEEEEE
Confidence 8877764
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.042 Score=54.46 Aligned_cols=213 Identities=11% Similarity=0.050 Sum_probs=120.4
Q ss_pred cEEEEEcCCC-CcceEeccCCCcEEEEEEE--ccCCEEEE-----------------EeCCCCeEEEEEcCCCCcceeEE
Q psy13635 51 DIRIANLSRP-LKPVTIIKDLEEGAAIDYY--YKKSMVCW-----------------TDHGTEMISCCTFDGNNVGSKHN 110 (357)
Q Consensus 51 ~i~~~~~~~~-~~~~~~~~~~~~~~~i~~d--~~~~~ly~-----------------~d~~~~~I~~~~~~g~~~~~~~~ 110 (357)
.+-||+++.= ....+.+++....+|+.+. |..+.++- ++...+.+..++.+... ....
T Consensus 153 Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etme--V~~q 230 (635)
T PRK02888 153 RVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETME--VAWQ 230 (635)
T ss_pred ceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccce--EEEE
Confidence 4778888651 1222234566666666665 33444432 22222345555555432 1133
Q ss_pred EEeCCcCCceeEEEEcCCCeEEEEeCC---CCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCC
Q psy13635 111 VITNGLITPDGLAIDWLTEKLYWTDSE---TNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVA 187 (357)
Q Consensus 111 ~~~~~~~~p~glavd~~~~~ly~td~~---~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~ 187 (357)
+...+ +|..+++++.++.+|++..+ .+.+..++.......+.+ +.+..-++-..+
T Consensus 231 V~Vdg--npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf--------------------ni~~iea~vkdG 288 (635)
T PRK02888 231 VMVDG--NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF--------------------NIARIEEAVKAG 288 (635)
T ss_pred EEeCC--CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE--------------------chHHHHHhhhCC
Confidence 33333 89999999988888888632 334444443222211111 011101111134
Q ss_pred CeEEEEeCCCCeEEEEEcCC-----CceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCce-------
Q psy13635 188 RNLYWTDTGTDRIEVCRLEG-----THRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGER------- 255 (357)
Q Consensus 188 ~~lY~td~~~~~I~~~~~~g-----~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~------- 255 (357)
+..|+ +.++|.++|... ......+. --..|.|++++|+..++|++.... ..+..++......
T Consensus 289 K~~~V---~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS--~tVSVIDv~k~k~~~~~~~~ 362 (635)
T PRK02888 289 KFKTI---GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLS--PTVTVIDVRKLDDLFDGKIK 362 (635)
T ss_pred CEEEE---CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCC--CcEEEEEChhhhhhhhccCC
Confidence 45554 246788877654 22333333 247899999999988999999875 4888888764221
Q ss_pred --EEEeeC--CCCCceEEEEecCCCEEEEEeCCCCeEEEEeCC
Q psy13635 256 --VLLVKD--RLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFD 294 (357)
Q Consensus 256 --~~~~~~--~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~d 294 (357)
.+++.+ --..|...++| ..|+.|.+-.-...|.+.+++
T Consensus 363 ~~~~vvaevevGlGPLHTaFD-g~G~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 363 PRDAVVAEPELGLGPLHTAFD-GRGNAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred ccceEEEeeccCCCcceEEEC-CCCCEEEeEeecceeEEEehH
Confidence 112211 12468889999 567899887777777777754
|
|
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.034 Score=50.26 Aligned_cols=171 Identities=15% Similarity=0.065 Sum_probs=99.6
Q ss_pred cccCCceEEEeCCCCeEEEEeCCCCeEEEE---E-------cCCCceE-----EEecCCCCCceEEEEeCCCCEEEEEeC
Q psy13635 174 EVEHPDGVAVDWVARNLYWTDTGTDRIEVC---R-------LEGTHRK-----VLVNTDLVEPRAITLSPAHGYLFWSDW 238 (357)
Q Consensus 174 ~~~~p~glavD~~~~~lY~td~~~~~I~~~---~-------~~g~~~~-----~~~~~~~~~P~giavd~~~g~Ly~~d~ 238 (357)
.|..|.||++. .++||.+... .|.+. + ..+..-. ....++--....|++. ++.+++.++
T Consensus 47 ~F~r~MGl~~~--~~~l~~~t~~--qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TGdidiHdia~~--~~~l~fVNT 120 (335)
T TIGR03032 47 TFPRPMGLAVS--PQSLTLGTRY--QLWRFANVDNLLPAGQTHPGYDRLYVPRASYVTGDIDAHDLALG--AGRLLFVNT 120 (335)
T ss_pred ccCccceeeee--CCeEEEEEcc--eeEEcccccccccccccCCCCCeEEeeeeeeeccCcchhheeec--CCcEEEEEC
Confidence 34577788775 5678877653 35544 1 1111111 1111223355678883 577888877
Q ss_pred CCCCCeEEEEecCCCceE--------EEeeCCCCCceEEEEecCCCEEEEEeCCC---CeEEEEeC-CCCCe-----EEE
Q psy13635 239 NEKRPKIERSLLNGGERV--------LLVKDRLGWPNGITLDVDNEKLYWCDAKT---DKIEMIDF-DGNNR-----REL 301 (357)
Q Consensus 239 ~~~~~~I~~~~~dg~~~~--------~~~~~~l~~P~giaid~~~~~lY~~d~~~---~~I~~~~~-dG~~~-----~~i 301 (357)
.- +.+...+.+-+-.. .+..++=-+-||+|++ .+.--|++--.. ..=++-.. +|.-. .++
T Consensus 121 ~f--SCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~-~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~ev 197 (335)
T TIGR03032 121 LF--SCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALD-DGEPRYVTALSQSDVADGWREGRRDGGCVIDIPSGEV 197 (335)
T ss_pred cc--eeEEEECCCCccccccCCccccccCccCceeecceeee-CCeEEEEEEeeccCCcccccccccCCeEEEEeCCCCE
Confidence 73 47777776654331 1122232456899996 555567665322 12222222 22111 123
Q ss_pred ecCCCCceEEEEEECCEEEEEeCCCCeEEEEeCccCceeEEEecccCCceeee
Q psy13635 302 INENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVIIERSCTGVTRR 354 (357)
Q Consensus 302 ~~~~~~~p~gia~~~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~i~ 354 (357)
+.+++..|.+-.+.+|.||+.|++.+++.++++.+|+...+ +.--+.|-|+.
T Consensus 198 l~~GLsmPhSPRWhdgrLwvldsgtGev~~vD~~~G~~e~V-a~vpG~~rGL~ 249 (335)
T TIGR03032 198 VASGLSMPHSPRWYQGKLWLLNSGRGELGYVDPQAGKFQPV-AFLPGFTRGLA 249 (335)
T ss_pred EEcCccCCcCCcEeCCeEEEEECCCCEEEEEcCCCCcEEEE-EECCCCCcccc
Confidence 44578899999999999999999999999999865765544 44334555554
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.15 Score=50.81 Aligned_cols=199 Identities=11% Similarity=0.101 Sum_probs=129.0
Q ss_pred CcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCc
Q psy13635 71 EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKK 150 (357)
Q Consensus 71 ~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~ 150 (357)
.+...+.+...+++|=+....-+++....-.... ........+.....+++.+ .+.+..|-...++|.+.+...+.
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs---YVlKQQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~Sgf 383 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES---YVLKQQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGF 383 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccceEEEEEeeccc---eeeeccccccceeeEEECC-CCcEEEeccCCCcEEEEeccCce
Confidence 3566777777777776666655666555544331 1111222356678899996 56677888889999999998888
Q ss_pred eEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcC-CCceEEEecCCCCCceEEEEeCC
Q psy13635 151 RKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLE-GTHRKVLVNTDLVEPRAITLSPA 229 (357)
Q Consensus 151 ~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~-g~~~~~~~~~~~~~P~giavd~~ 229 (357)
+-+.+... .....++.+. ..|+..++-.-.++|...|+. +.+-+++....-.+-..+|+||.
T Consensus 384 C~vTFteH----------------ts~Vt~v~f~-~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~s 446 (893)
T KOG0291|consen 384 CFVTFTEH----------------TSGVTAVQFT-ARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPS 446 (893)
T ss_pred EEEEeccC----------------CCceEEEEEE-ecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCC
Confidence 77665432 2356677777 555666676767788877765 45555555433345578999986
Q ss_pred CCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeC
Q psy13635 230 HGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDF 293 (357)
Q Consensus 230 ~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~ 293 (357)
|.|-.+-.... ..|+...+..+....+++..=.-..+|.+++.+..|+ +-+....|..-+.
T Consensus 447 -GelV~AG~~d~-F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~La-S~SWDkTVRiW~i 507 (893)
T KOG0291|consen 447 -GELVCAGAQDS-FEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLA-SGSWDKTVRIWDI 507 (893)
T ss_pred -CCEEEeeccce-EEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEE-eccccceEEEEEe
Confidence 66666654443 6888888877766666654433347899997666555 4444556666554
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.09 Score=49.31 Aligned_cols=221 Identities=19% Similarity=0.235 Sum_probs=110.9
Q ss_pred EEEEE---ccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEE----cCCCe---EEEEeCC--CCEEE
Q psy13635 75 AIDYY---YKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAID----WLTEK---LYWTDSE--TNKLE 142 (357)
Q Consensus 75 ~i~~d---~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd----~~~~~---ly~td~~--~~~I~ 142 (357)
+|.++ +....|.-|+.. +.++.++++|.. ...+.. ..|..+.+- ..++. +..++.. .++|.
T Consensus 58 AIWvnp~dp~kSlIigTdK~-~GL~VYdL~Gk~----lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~ 130 (381)
T PF02333_consen 58 AIWVNPADPAKSLIIGTDKK-GGLYVYDLDGKE----LQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLR 130 (381)
T ss_dssp EEE--SS-GGG-EEEEEETT-TEEEEEETTS-E----EEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEE
T ss_pred cEecCCCCcccceEEEEeCC-CCEEEEcCCCcE----EEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEE
Confidence 34454 445566667765 578888999874 222222 234443331 11222 3445543 25555
Q ss_pred EEEcCCCc--eEEEEecCCCCcceeeeeccCcccccCCceEEE--eCCCCeEEEE-eCCCCeEEEEEc--C--CCceEEE
Q psy13635 143 VSSLDGKK--RKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAV--DWVARNLYWT-DTGTDRIEVCRL--E--GTHRKVL 213 (357)
Q Consensus 143 ~~~~~g~~--~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glav--D~~~~~lY~t-d~~~~~I~~~~~--~--g~~~~~~ 213 (357)
.+.++... .+.+... ..| + ...+..|.|+++ ++.++.+|.. ....+.+.+..+ + |...-.+
T Consensus 131 ~f~id~~~g~L~~v~~~--~~p--~------~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~l 200 (381)
T PF02333_consen 131 LFRIDPDTGELTDVTDP--AAP--I------ATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATL 200 (381)
T ss_dssp EEEEETTTTEEEE-CBT--TC---E------E-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEE
T ss_pred EEEecCCCCcceEcCCC--Ccc--c------ccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEE
Confidence 55554322 2222111 111 1 223456788887 5566777654 233356665544 2 3221122
Q ss_pred ec--CCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecC--C-CceEEEee---CCC-CCceEEEEec---CCCEEEEE
Q psy13635 214 VN--TDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLN--G-GERVLLVK---DRL-GWPNGITLDV---DNEKLYWC 281 (357)
Q Consensus 214 ~~--~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~d--g-~~~~~~~~---~~l-~~P~giaid~---~~~~lY~~ 281 (357)
+. ..-.+|.|+++|...|+||+++.. ..||+...+ + ...+.+.. ..+ ....||++-+ ..++|.++
T Consensus 201 VR~f~~~sQ~EGCVVDDe~g~LYvgEE~---~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivS 277 (381)
T PF02333_consen 201 VREFKVGSQPEGCVVDDETGRLYVGEED---VGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVS 277 (381)
T ss_dssp EEEEE-SS-EEEEEEETTTTEEEEEETT---TEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEE
T ss_pred EEEecCCCcceEEEEecccCCEEEecCc---cEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEE
Confidence 21 123589999999999999999988 589999987 3 33333322 123 3467999943 35789999
Q ss_pred eCCCCeEEEEeCCCCCe----EEEecC----CCCceEEEEEE
Q psy13635 282 DAKTDKIEMIDFDGNNR----RELINE----NLPHVFGISLL 315 (357)
Q Consensus 282 d~~~~~I~~~~~dG~~~----~~i~~~----~~~~p~gia~~ 315 (357)
+.+.+....++..|.+. ..+... ...++.|+++.
T Consensus 278 sQG~~sf~Vy~r~~~~~~~g~f~i~~~~~idg~~eTDG~~v~ 319 (381)
T PF02333_consen 278 SQGDNSFAVYDREGPNAYVGSFRIGDGGGIDGVSETDGIEVV 319 (381)
T ss_dssp EGGGTEEEEEESSTT--EEEEEEEE--SSS----S---EEEE
T ss_pred cCCCCeEEEEecCCCCcccceEEeccCCCccccccCCcceEE
Confidence 99999999999887532 223221 24466777663
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.044 Score=50.87 Aligned_cols=174 Identities=16% Similarity=0.116 Sum_probs=100.9
Q ss_pred CcCCceeEEEEcCCCeEEEEeCCCCE------EEEEEcCCC---ce--EEEEecCCCCcceeeeeccCcccccCCceEEE
Q psy13635 115 GLITPDGLAIDWLTEKLYWTDSETNK------LEVSSLDGK---KR--KVLYWEDIDQPRAIASYKLPTIEVEHPDGVAV 183 (357)
Q Consensus 115 ~~~~p~glavd~~~~~ly~td~~~~~------I~~~~~~g~---~~--~~~~~~~~~~p~~i~~~~~~~~~~~~p~glav 183 (357)
.+..-.||++++..+ .||+=++.+. ++...++.. .. ...-...+..+.+..+ ......++||++
T Consensus 18 ~~GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~----~~~~~D~Egi~~ 92 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPF----PKNGLDPEGIAV 92 (326)
T ss_pred ccCcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcC----CcCCCChhHeEE
Confidence 445568899986444 4554444444 776665541 11 1111111111111111 112227899999
Q ss_pred eCCCCeEEEEeCCC------CeEEEEEcCCCceEEE-ecCCC-------------CCceEEEEeCCCCEEEEEeCCCC--
Q psy13635 184 DWVARNLYWTDTGT------DRIEVCRLEGTHRKVL-VNTDL-------------VEPRAITLSPAHGYLFWSDWNEK-- 241 (357)
Q Consensus 184 D~~~~~lY~td~~~------~~I~~~~~~g~~~~~~-~~~~~-------------~~P~giavd~~~g~Ly~~d~~~~-- 241 (357)
+.++.+||++.+. .+|.+++++|...+.+ +...+ ....+||+.|.+..||.+....-
T Consensus 93 -~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~ 171 (326)
T PF13449_consen 93 -PPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQ 171 (326)
T ss_pred -ecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccC
Confidence 5899999999999 9999999999875554 22211 24569999998666888875531
Q ss_pred ----C-------CeEEEEecCC--CceEE-Eee-C------CCCCceEEEEecCCCEEEEEeCC-------CCeEEEEeC
Q psy13635 242 ----R-------PKIERSLLNG--GERVL-LVK-D------RLGWPNGITLDVDNEKLYWCDAK-------TDKIEMIDF 293 (357)
Q Consensus 242 ----~-------~~I~~~~~dg--~~~~~-~~~-~------~l~~P~giaid~~~~~lY~~d~~-------~~~I~~~~~ 293 (357)
. .+|.+.+... ..... .+. . ....+..++.- .++++++.+.. ..+|+.+++
T Consensus 172 d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al-~d~~lLvLER~~~~~~~~~~ri~~v~l 250 (326)
T PF13449_consen 172 DGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAAL-PDGRLLVLERDFSPGTGNYKRIYRVDL 250 (326)
T ss_pred CCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEE-CCCcEEEEEccCCCCccceEEEEEEEc
Confidence 1 3566666553 11222 221 1 23445555554 57789998865 356888887
Q ss_pred CC
Q psy13635 294 DG 295 (357)
Q Consensus 294 dG 295 (357)
.+
T Consensus 251 ~~ 252 (326)
T PF13449_consen 251 SD 252 (326)
T ss_pred cc
Confidence 54
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.18 Score=47.35 Aligned_cols=117 Identities=25% Similarity=0.359 Sum_probs=73.4
Q ss_pred CCCCceEEEEe--CCCCEEEEEeCCCCCCeEEEEec--CCCc--eEEEee--CCCCCceEEEEecCCCEEEEEeCCCCeE
Q psy13635 217 DLVEPRAITLS--PAHGYLFWSDWNEKRPKIERSLL--NGGE--RVLLVK--DRLGWPNGITLDVDNEKLYWCDAKTDKI 288 (357)
Q Consensus 217 ~~~~P~giavd--~~~g~Ly~~d~~~~~~~I~~~~~--dg~~--~~~~~~--~~l~~P~giaid~~~~~lY~~d~~~~~I 288 (357)
.+..|+|+++- +.+|.+|..-.+.. +.+....+ ++.. .-.++. .--.+|.|+++|...+.||+++.. .-|
T Consensus 154 ~~~e~yGlcly~~~~~g~~ya~v~~k~-G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~-~GI 231 (381)
T PF02333_consen 154 DLSEPYGLCLYRSPSTGALYAFVNGKD-GRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEED-VGI 231 (381)
T ss_dssp SSSSEEEEEEEE-TTT--EEEEEEETT-SEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEETT-TEE
T ss_pred ccccceeeEEeecCCCCcEEEEEecCC-ceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEecCc-cEE
Confidence 45679999984 55677776654433 56666655 2322 112221 123579999999999999999986 589
Q ss_pred EEEeCC--C-CCeEEEec---CCC-CceEEEEEE-----CCEEEEEeCCCCeEEEEeCc
Q psy13635 289 EMIDFD--G-NNRRELIN---ENL-PHVFGISLL-----GDYVYWTDWQRRSIDRVNKI 335 (357)
Q Consensus 289 ~~~~~d--G-~~~~~i~~---~~~-~~p~gia~~-----~~~ly~td~~~~~I~~~~~~ 335 (357)
|+++.+ + ...+.+.. ..+ ....||++. .|+|.+++.++++...+++.
T Consensus 232 W~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~ 290 (381)
T PF02333_consen 232 WRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDRE 290 (381)
T ss_dssp EEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESS
T ss_pred EEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecC
Confidence 999875 3 33333321 223 367899985 26899999999988888873
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.12 Score=48.50 Aligned_cols=121 Identities=16% Similarity=0.263 Sum_probs=72.3
Q ss_pred EeCCCC--eEEEEEcCCCceEEEecC----CCCCceEEEEe-CCCC-EEEEEeCCCCCCeEEEEecCCCceEEEeeCCCC
Q psy13635 193 TDTGTD--RIEVCRLEGTHRKVLVNT----DLVEPRAITLS-PAHG-YLFWSDWNEKRPKIERSLLNGGERVLLVKDRLG 264 (357)
Q Consensus 193 td~~~~--~I~~~~~~g~~~~~~~~~----~~~~P~giavd-~~~g-~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~ 264 (357)
.+...+ .+..|+......+.+..+ -+.......+- +.++ .|++++ ..+-.+|+.++.+|...+.+......
T Consensus 203 ~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~~lT~G~~~ 281 (353)
T PF00930_consen 203 LNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPRQLTSGDWE 281 (353)
T ss_dssp EETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEEESS-SSS-
T ss_pred cccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE-cCCCcEEEEEcccccceeccccCcee
Confidence 344444 577788765444443332 13333445543 4444 455555 43347999999999886655433322
Q ss_pred CceEEEEecCCCEEEEEeCC----CCeEEEEeCC-CCCeEEEecCCCCceEEEEEE
Q psy13635 265 WPNGITLDVDNEKLYWCDAK----TDKIEMIDFD-GNNRRELINENLPHVFGISLL 315 (357)
Q Consensus 265 ~P~giaid~~~~~lY~~d~~----~~~I~~~~~d-G~~~~~i~~~~~~~p~gia~~ 315 (357)
--.-+.+|..++.||++-.. ...+++++++ |...+.+-.....+ ..+++.
T Consensus 282 V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~-~~~~~S 336 (353)
T PF00930_consen 282 VTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH-YSASFS 336 (353)
T ss_dssp EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTT-EEEEE-
T ss_pred ecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCc-eEEEEC
Confidence 21347888889999998765 4589999999 77777665544445 455555
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.31 Score=48.76 Aligned_cols=189 Identities=11% Similarity=0.043 Sum_probs=122.6
Q ss_pred CCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcC-
Q psy13635 69 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD- 147 (357)
Q Consensus 69 ~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~- 147 (357)
.......++|.| +|.+..+...+++|...+...+.+ ..+..+.-....++.+. ..++..++.+-.|+|...++.
T Consensus 349 H~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC---~vTFteHts~Vt~v~f~-~~g~~llssSLDGtVRAwDlkR 423 (893)
T KOG0291|consen 349 HSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFC---FVTFTEHTSGVTAVQFT-ARGNVLLSSSLDGTVRAWDLKR 423 (893)
T ss_pred cccceeeEEECC-CCcEEEeccCCCcEEEEeccCceE---EEEeccCCCceEEEEEE-ecCCEEEEeecCCeEEeeeecc
Confidence 466788999998 566778888899999999988752 44555666778899998 467777788778888888874
Q ss_pred CCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEe
Q psy13635 148 GKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLS 227 (357)
Q Consensus 148 g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd 227 (357)
..+-+++. .|+.+ +-..+|+|+.+.-+.......-.|.+-+.......-++.+.-....+|+++
T Consensus 424 YrNfRTft-----~P~p~-----------QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~ 487 (893)
T KOG0291|consen 424 YRNFRTFT-----SPEPI-----------QFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFS 487 (893)
T ss_pred cceeeeec-----CCCce-----------eeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEc
Confidence 33333332 22222 346799998766555555544488888877554444444443445689999
Q ss_pred CCCCEEEEEeCCCCCCeEEEEecCCC--ceEEEeeCCCCCceEEEEecCCCEEEEEeC
Q psy13635 228 PAHGYLFWSDWNEKRPKIERSLLNGG--ERVLLVKDRLGWPNGITLDVDNEKLYWCDA 283 (357)
Q Consensus 228 ~~~g~Ly~~d~~~~~~~I~~~~~dg~--~~~~~~~~~l~~P~giaid~~~~~lY~~d~ 283 (357)
|.+..|+-..|.. .|..-+.-++ ..+++- --....++++-|++..|-++-.
T Consensus 488 ~~~~~LaS~SWDk---TVRiW~if~s~~~vEtl~--i~sdvl~vsfrPdG~elaVaTl 540 (893)
T KOG0291|consen 488 PDGSLLASGSWDK---TVRIWDIFSSSGTVETLE--IRSDVLAVSFRPDGKELAVATL 540 (893)
T ss_pred cccCeEEeccccc---eEEEEEeeccCceeeeEe--eccceeEEEEcCCCCeEEEEEe
Confidence 9888888887774 4444444333 333331 1233456666666666666553
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.28 Score=43.99 Aligned_cols=254 Identities=12% Similarity=0.096 Sum_probs=151.7
Q ss_pred CCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEE-EcCCCeEEEEeCCCCEEEEEEcCC
Q psy13635 70 LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAI-DWLTEKLYWTDSETNKLEVSSLDG 148 (357)
Q Consensus 70 ~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glav-d~~~~~ly~td~~~~~I~~~~~~g 148 (357)
-.++.+++|+..+..+. +...++.|+-.+..... +...+...--.+.-+.+ +.....||-+...+..|+-.++..
T Consensus 14 ~~~i~sl~fs~~G~~li-tss~dDsl~LYd~~~g~---~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d 89 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLI-TSSEDDSLRLYDSLSGK---QVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD 89 (311)
T ss_pred CCceeEEEecCCCCEEE-EecCCCeEEEEEcCCCc---eeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeec
Confidence 45788999997555554 45556677777766553 23333332223333333 333444555555677888888754
Q ss_pred C-ceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEe
Q psy13635 149 K-KRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLS 227 (357)
Q Consensus 149 ~-~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd 227 (357)
. ..+.+... -...+.|.+.|.+ ..|.+......|.--|+.-.....++. +..+--.|+|
T Consensus 90 NkylRYF~GH-----------------~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~--~~~~pi~AfD 149 (311)
T KOG1446|consen 90 NKYLRYFPGH-----------------KKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLN--LSGRPIAAFD 149 (311)
T ss_pred CceEEEcCCC-----------------CceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEe--cCCCcceeEC
Confidence 4 33333211 1256788888777 678888877788888888666666553 3456678999
Q ss_pred CCCCEEEEEeCCCCCCeEEEEecCC---CceEEE-ee-CCCCCceEEEEecCCCEEEEEeCCCCeEEEEe-CCCCCeEEE
Q psy13635 228 PAHGYLFWSDWNEKRPKIERSLLNG---GERVLL-VK-DRLGWPNGITLDVDNEKLYWCDAKTDKIEMID-FDGNNRREL 301 (357)
Q Consensus 228 ~~~g~Ly~~d~~~~~~~I~~~~~dg---~~~~~~-~~-~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~-~dG~~~~~i 301 (357)
|. |.+|-+-.+++ .|.-.++.. +.-+.+ +. ....+=+.|.+.+++..|.++.. .+.++.++ .+|.-...+
T Consensus 150 p~-GLifA~~~~~~--~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~-~s~~~~lDAf~G~~~~tf 225 (311)
T KOG1446|consen 150 PE-GLIFALANGSE--LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN-ASFIYLLDAFDGTVKSTF 225 (311)
T ss_pred CC-CcEEEEecCCC--eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC-CCcEEEEEccCCcEeeeE
Confidence 85 87777766643 666555432 222222 22 22344578888877767776664 45666665 478755444
Q ss_pred ecC--CCCceEEEEEE-CCEEEEEeCCCCeEEEEeCccCceeEEEecccCCce
Q psy13635 302 INE--NLPHVFGISLL-GDYVYWTDWQRRSIDRVNKITGNDREVIIERSCTGV 351 (357)
Q Consensus 302 ~~~--~~~~p~gia~~-~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p~ 351 (357)
... ...-|.+-++. ++....+....|+|..-+..+|..+..+......|.
T Consensus 226 s~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~ 278 (311)
T KOG1446|consen 226 SGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPV 278 (311)
T ss_pred eeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCc
Confidence 332 23344333333 455555666778988888888888887766544443
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.4 Score=45.55 Aligned_cols=131 Identities=13% Similarity=0.175 Sum_probs=85.0
Q ss_pred EeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEE
Q psy13635 134 TDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVL 213 (357)
Q Consensus 134 td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~ 213 (357)
.+.....+...+.+|...+.+ ...+.....+.+++.+..+-+++. ...|++++.+..+.+.+
T Consensus 377 gt~dgD~l~iyd~~~~e~kr~-----------------e~~lg~I~av~vs~dGK~~vvaNd-r~el~vididngnv~~i 438 (668)
T COG4946 377 GTNDGDKLGIYDKDGGEVKRI-----------------EKDLGNIEAVKVSPDGKKVVVAND-RFELWVIDIDNGNVRLI 438 (668)
T ss_pred eccCCceEEEEecCCceEEEe-----------------eCCccceEEEEEcCCCcEEEEEcC-ceEEEEEEecCCCeeEe
Confidence 333344556666666555444 344556778888866666766654 35899999998877777
Q ss_pred ecCCCCCceEEEEeCCCCEEEEEeCCCC-CCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeC
Q psy13635 214 VNTDLVEPRAITLSPAHGYLFWSDWNEK-RPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDA 283 (357)
Q Consensus 214 ~~~~~~~P~giavd~~~g~Ly~~d~~~~-~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~ 283 (357)
-.+.-....+++++|....+-++=..+. ...|...+++|...--+.. ...+-.+=|+|+++..||+...
T Consensus 439 dkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 439 DKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred cccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEec
Confidence 6655566788888887666655543321 3578888898876554432 2233334478888999998653
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.18 Score=46.06 Aligned_cols=162 Identities=15% Similarity=0.117 Sum_probs=101.4
Q ss_pred EEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeE
Q psy13635 111 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNL 190 (357)
Q Consensus 111 ~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~l 190 (357)
++...+.....+|||| .+.-|.+.+....|...++........+. +-+....|++|....-.|
T Consensus 146 Vi~gHlgWVr~vavdP-~n~wf~tgs~DrtikIwDlatg~Lkltlt----------------Ghi~~vr~vavS~rHpYl 208 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDP-GNEWFATGSADRTIKIWDLATGQLKLTLT----------------GHIETVRGVAVSKRHPYL 208 (460)
T ss_pred hhhhccceEEEEeeCC-CceeEEecCCCceeEEEEcccCeEEEeec----------------chhheeeeeeecccCceE
Confidence 4444567789999997 57788888888999999987665554432 223468899998777777
Q ss_pred EEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEE
Q psy13635 191 YWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGIT 270 (357)
Q Consensus 191 Y~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~gia 270 (357)
|-+.. ...|-.-|+.-....--..+.+.....+++.|....|+-+-.. ..+..-++........+...-.....+.
T Consensus 209 Fs~ge-dk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grD---st~RvWDiRtr~~V~~l~GH~~~V~~V~ 284 (460)
T KOG0285|consen 209 FSAGE-DKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRD---STIRVWDIRTRASVHVLSGHTNPVASVM 284 (460)
T ss_pred EEecC-CCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCc---ceEEEeeecccceEEEecCCCCcceeEE
Confidence 75443 3567777776554332233567788999999875555444333 3555555554444444433323335566
Q ss_pred EecCCCEEEEEeCCCCeEEEEeCC
Q psy13635 271 LDVDNEKLYWCDAKTDKIEMIDFD 294 (357)
Q Consensus 271 id~~~~~lY~~d~~~~~I~~~~~d 294 (357)
..+.+..+|-+. ....|..-|+.
T Consensus 285 ~~~~dpqvit~S-~D~tvrlWDl~ 307 (460)
T KOG0285|consen 285 CQPTDPQVITGS-HDSTVRLWDLR 307 (460)
T ss_pred eecCCCceEEec-CCceEEEeeec
Confidence 666677776543 34566666653
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.22 Score=46.28 Aligned_cols=124 Identities=13% Similarity=0.143 Sum_probs=73.5
Q ss_pred cCCCcEEEEEEEccCCEEE-EEeCCC----CeEEEEEcCCCC--c--cee--EEEEeCC----c----CCceeEEEEcCC
Q psy13635 68 KDLEEGAAIDYYYKKSMVC-WTDHGT----EMISCCTFDGNN--V--GSK--HNVITNG----L----ITPDGLAIDWLT 128 (357)
Q Consensus 68 ~~~~~~~~i~~d~~~~~ly-~~d~~~----~~I~~~~~~g~~--~--~~~--~~~~~~~----~----~~p~glavd~~~ 128 (357)
..++...||++++..+.+| ++|... ..+++..++... . ... ...+... + .-++||++ ..+
T Consensus 17 ~~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~-~~~ 95 (326)
T PF13449_consen 17 IPFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAV-PPD 95 (326)
T ss_pred CccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEE-ecC
Confidence 3455678899987566544 334333 126666655411 0 000 1111111 1 16789999 479
Q ss_pred CeEEEEeCCC------CEEEEEEcCCCceEEE-EecCCCCcce-eeeeccCcccccCCceEEEeCCCCeEEEEeCC
Q psy13635 129 EKLYWTDSET------NKLEVSSLDGKKRKVL-YWEDIDQPRA-IASYKLPTIEVEHPDGVAVDWVARNLYWTDTG 196 (357)
Q Consensus 129 ~~ly~td~~~------~~I~~~~~~g~~~~~~-~~~~~~~p~~-i~~~~~~~~~~~~p~glavD~~~~~lY~td~~ 196 (357)
+.+||++... .+|.+++.+|...+.+ ++..+..... -. -.......+|||+.+.++.||.+-..
T Consensus 96 g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~----~~~~N~G~E~la~~~dG~~l~~~~E~ 167 (326)
T PF13449_consen 96 GSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTS----GRRNNRGFEGLAVSPDGRTLFAAMES 167 (326)
T ss_pred CCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccc----cccCCCCeEEEEECCCCCEEEEEECc
Confidence 9999999999 9999999999886655 3332210000 00 01233577899999888778887654
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.54 Score=45.27 Aligned_cols=229 Identities=17% Similarity=0.111 Sum_probs=116.4
Q ss_pred CeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCC-C--CEEEEEEcCCCceEEEEecCCCCcceeeeec
Q psy13635 93 EMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSE-T--NKLEVSSLDGKKRKVLYWEDIDQPRAIASYK 169 (357)
Q Consensus 93 ~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~-~--~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~ 169 (357)
..++..+-+|.. ...+.........-+.-+.+..+.+.... . .+|+..+++......+.....
T Consensus 173 ~~l~~~D~dg~~----~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g---------- 238 (425)
T COG0823 173 YELALGDYDGYN----QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNG---------- 238 (425)
T ss_pred ceEEEEccCCcc----eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCC----------
Confidence 356666666553 33333322222233333445554443322 2 358888888777766654211
Q ss_pred cCcccccCCceEEEeCCCCeEEEEeCCCC--eEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEE
Q psy13635 170 LPTIEVEHPDGVAVDWVARNLYWTDTGTD--RIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIER 247 (357)
Q Consensus 170 ~~~~~~~~p~glavD~~~~~lY~td~~~~--~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~ 247 (357)
.-...++-+.+.+|.++....+ .|+.++++++....+.... ..-..=.+.|.+..|+++........|++
T Consensus 239 -------~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~-gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~ 310 (425)
T COG0823 239 -------NNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGF-GINTSPSWSPDGSKIVFTSDRGGRPQIYL 310 (425)
T ss_pred -------ccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCC-ccccCccCCCCCCEEEEEeCCCCCcceEE
Confidence 0111123344567766655444 7999999988765544321 11113345677777777654443589999
Q ss_pred EecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCe--EEEEeCCCCC-eEEEecCCCCceEEEEEECCE-EEEEe
Q psy13635 248 SLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDK--IEMIDFDGNN-RRELINENLPHVFGISLLGDY-VYWTD 323 (357)
Q Consensus 248 ~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~--I~~~~~dG~~-~~~i~~~~~~~p~gia~~~~~-ly~td 323 (357)
++.+|...+.+....-.. ..-.+.+++.+|-+.....+. |...++.... .+.+-......+-..+.++.. +|.+.
T Consensus 311 ~~~~g~~~~riT~~~~~~-~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 311 YDLEGSQVTRLTFSGGGN-SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred ECCCCCceeEeeccCCCC-cCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEecc
Confidence 999999876665433221 122344455555555433333 5555553322 333333333344444555544 34444
Q ss_pred CCCCe-EEEEeCccCceeEEEec
Q psy13635 324 WQRRS-IDRVNKITGNDREVIIE 345 (357)
Q Consensus 324 ~~~~~-I~~~~~~~g~~~~~i~~ 345 (357)
...+. +.-+.. +|+....+..
T Consensus 390 ~~~~~~l~~~s~-~g~~~~~~~~ 411 (425)
T COG0823 390 QGGGSVLSLVSL-DGRVSRPLPL 411 (425)
T ss_pred CCCCceEEEeec-cceeEEEEec
Confidence 44344 334444 6666654433
|
|
| >PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.15 Score=50.38 Aligned_cols=150 Identities=14% Similarity=0.161 Sum_probs=82.9
Q ss_pred EccCCEEEEEeCC-CCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCC-CCEEEEEEcCCCceEEEEe
Q psy13635 79 YYKKSMVCWTDHG-TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSE-TNKLEVSSLDGKKRKVLYW 156 (357)
Q Consensus 79 d~~~~~ly~~d~~-~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~-~~~I~~~~~~g~~~~~~~~ 156 (357)
++....+|.+|.. .+.|||+-.+...... .. -.+-.+- .+|.||.+-.. .+.+..+.+..........
T Consensus 255 ~~~~~vvY~gDD~~~~~lYkFVs~~~~~~~-~~--------~~~~~ll-~~GtLyaak~~~~g~~~Wv~L~~~~~~l~~~ 324 (524)
T PF05787_consen 255 DPGRVVVYMGDDGRNGYLYKFVSDKPWDPG-DR--------AANRDLL-DEGTLYAAKFNQDGTGEWVPLGHGQGGLTAK 324 (524)
T ss_pred cCCeEEEEEEecCCCCeEEEEecCCCCCCc-cc--------chhhhhh-hCCEeceEEECCCCcEEEEECCCcccccccC
Confidence 6666678888764 4678887766552000 00 0011111 36777776542 3455555553221000000
Q ss_pred cCCCC-------cceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCC-------------------eEEEEEcCCC--
Q psy13635 157 EDIDQ-------PRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTD-------------------RIEVCRLEGT-- 208 (357)
Q Consensus 157 ~~~~~-------p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~-------------------~I~~~~~~g~-- 208 (357)
.+... .|.-| ..+-...+..|+|+++++.++.+|++.+... .|.+..+++.
T Consensus 325 ~~~~~~a~v~~~tr~aA-~~~GAT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~ 403 (524)
T PF05787_consen 325 NGFADQADVLIETRRAA-DAVGATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDH 403 (524)
T ss_pred CCCCChHHhhhhhhhcc-ccCccccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCcc
Confidence 00000 00000 0011457889999999999999999865443 7888887765
Q ss_pred -----ceEEEec-----------------CCCCCceEEEEeCCCCEEEEEeCCC
Q psy13635 209 -----HRKVLVN-----------------TDLVEPRAITLSPAHGYLFWSDWNE 240 (357)
Q Consensus 209 -----~~~~~~~-----------------~~~~~P~giavd~~~g~Ly~~d~~~ 240 (357)
....++. ..+..|-.|++|+. |+|++++-+.
T Consensus 404 ~~~~f~~~~~~~~g~~~~~~~~~~~~~~~~~f~sPDNL~~d~~-G~LwI~eD~~ 456 (524)
T PF05787_consen 404 AATTFTWELFLVGGDPTDASGNGSNKCDDNGFASPDNLAFDPD-GNLWIQEDGG 456 (524)
T ss_pred ccceeEEEEEEEecCcccccccccCcccCCCcCCCCceEECCC-CCEEEEeCCC
Confidence 2222211 23678999999985 8888876553
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.35 Score=42.81 Aligned_cols=249 Identities=12% Similarity=0.049 Sum_probs=161.6
Q ss_pred cEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCc--ceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCC
Q psy13635 72 EGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNV--GSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGK 149 (357)
Q Consensus 72 ~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~--~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~ 149 (357)
...+++..+.+-.++.+...+..|....+++-+. +....-+...-....++++.+ .++.+++-+..+.++..++.+.
T Consensus 17 ~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g 95 (315)
T KOG0279|consen 17 WVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSS-DGNFALSASWDGTLRLWDLATG 95 (315)
T ss_pred eEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEcc-CCceEEeccccceEEEEEecCC
Confidence 4556666666667777777777777766655431 111222222234567888874 6677778888888998898775
Q ss_pred ce-EEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCC-CCCceEEEEe
Q psy13635 150 KR-KVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTD-LVEPRAITLS 227 (357)
Q Consensus 150 ~~-~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~-~~~P~giavd 227 (357)
.. +.+.... ....+++|++.+ +-.++.....+|..-+.-|.-.-++.... -+....+.+.
T Consensus 96 ~~t~~f~GH~-----------------~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfs 157 (315)
T KOG0279|consen 96 ESTRRFVGHT-----------------KDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFS 157 (315)
T ss_pred cEEEEEEecC-----------------CceEEEEecCCC-ceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEc
Confidence 33 3343222 256788998544 55567777778888777776655555443 5678889999
Q ss_pred CCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCC-CeEEEecCCC
Q psy13635 228 PAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGN-NRRELINENL 306 (357)
Q Consensus 228 ~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~-~~~~i~~~~~ 306 (357)
|.+...++...+.. ..+..-++++-....-........+-+++. .+|.|..+-.+.+.++..+++-. ....+ +.+
T Consensus 158 P~~~~p~Ivs~s~D-ktvKvWnl~~~~l~~~~~gh~~~v~t~~vS-pDGslcasGgkdg~~~LwdL~~~k~lysl--~a~ 233 (315)
T KOG0279|consen 158 PNESNPIIVSASWD-KTVKVWNLRNCQLRTTFIGHSGYVNTVTVS-PDGSLCASGGKDGEAMLWDLNEGKNLYSL--EAF 233 (315)
T ss_pred CCCCCcEEEEccCC-ceEEEEccCCcchhhccccccccEEEEEEC-CCCCEEecCCCCceEEEEEccCCceeEec--cCC
Confidence 98766777666543 577777787766555544555677889997 57888888777888999888644 33322 345
Q ss_pred CceEEEEEECCEEEEEeCCCCeEEEEeCccCceeEEE
Q psy13635 307 PHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVI 343 (357)
Q Consensus 307 ~~p~gia~~~~~ly~td~~~~~I~~~~~~~g~~~~~i 343 (357)
....++++.+++.+.+-.....|...+..++..++.+
T Consensus 234 ~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l 270 (315)
T KOG0279|consen 234 DIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEEL 270 (315)
T ss_pred CeEeeEEecCCceeEeeccCCceEEEeccchhhhhhc
Confidence 5566777777665555555556766776556555444
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.63 Score=44.27 Aligned_cols=173 Identities=9% Similarity=0.017 Sum_probs=105.4
Q ss_pred EEEEEeCCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeE
Q psy13635 43 MLLFATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGL 122 (357)
Q Consensus 43 ~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~gl 122 (357)
++.+.++.....++... .+.+.+..-....-..+....+.+.......+.+...+.+|+. ...+..++.+.+.+
T Consensus 334 ~ia~VSRGkaFi~~~~~--~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e----~kr~e~~lg~I~av 407 (668)
T COG4946 334 YIALVSRGKAFIMRPWD--GYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE----VKRIEKDLGNIEAV 407 (668)
T ss_pred EEEEEecCcEEEECCCC--CeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce----EEEeeCCccceEEE
Confidence 44455555555565544 2222222222222222333334555566666688888888885 67788899999999
Q ss_pred EEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeC---CCCe
Q psy13635 123 AIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDT---GTDR 199 (357)
Q Consensus 123 avd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~---~~~~ 199 (357)
++++.++.+.+++ ....|.+++++....+.+-.+.. .-..++++.+..+.+=.+=. -...
T Consensus 408 ~vs~dGK~~vvaN-dr~el~vididngnv~~idkS~~----------------~lItdf~~~~nsr~iAYafP~gy~tq~ 470 (668)
T COG4946 408 KVSPDGKKVVVAN-DRFELWVIDIDNGNVRLIDKSEY----------------GLITDFDWHPNSRWIAYAFPEGYYTQS 470 (668)
T ss_pred EEcCCCcEEEEEc-CceEEEEEEecCCCeeEeccccc----------------ceeEEEEEcCCceeEEEecCcceeeee
Confidence 9998666676665 46789999998888777643321 12344555544443322211 1246
Q ss_pred EEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCC
Q psy13635 200 IEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWN 239 (357)
Q Consensus 200 I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~ 239 (357)
|...+++|...--+.+ ...+-.+-|+||++.+||+-...
T Consensus 471 Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~R 509 (668)
T COG4946 471 IKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLSAR 509 (668)
T ss_pred EEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEecc
Confidence 8888888865543332 33444556899999999998755
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.41 Score=41.77 Aligned_cols=278 Identities=12% Similarity=0.073 Sum_probs=162.8
Q ss_pred CeEEEEEe--CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCC
Q psy13635 41 AQMLLFAT--SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLIT 118 (357)
Q Consensus 41 ~~~l~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 118 (357)
.|.++.+. ++.|+--.+..+.=...+..+-.+..++.+.++...| +-.....|+-.+++.+.. .........-++
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~L--Aaa~~qhvRlyD~~S~np-~Pv~t~e~h~kN 85 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDL--AAAGNQHVRLYDLNSNNP-NPVATFEGHTKN 85 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchh--hhccCCeeEEEEccCCCC-CceeEEeccCCc
Confidence 45566665 4567766666655555566667788888888755444 444566888889988762 122333334477
Q ss_pred ceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCC
Q psy13635 119 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTD 198 (357)
Q Consensus 119 p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~ 198 (357)
...+.|.. .++-.++.+..+.+...++........+... ...+.+.+.|....|+..|.. +
T Consensus 86 VtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~-----------------spVn~vvlhpnQteLis~dqs-g 146 (311)
T KOG0315|consen 86 VTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN-----------------SPVNTVVLHPNQTELISGDQS-G 146 (311)
T ss_pred eEEEEEee-cCeEEEecCCCceEEEEeccCcccchhccCC-----------------CCcceEEecCCcceEEeecCC-C
Confidence 88899986 4555567778888888888764444433211 245788889889999988875 5
Q ss_pred eEEEEEcCCC-ceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCC-ceEEEee-CCC--C--CceEEEE
Q psy13635 199 RIEVCRLEGT-HRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGG-ERVLLVK-DRL--G--WPNGITL 271 (357)
Q Consensus 199 ~I~~~~~~g~-~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~-~~~~~~~-~~l--~--~P~giai 271 (357)
.|.+-|+... ....++.+.......++++|++..|--++.. +..+.-++-+. ....+.. ..+ . +.....+
T Consensus 147 ~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnk---G~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~l 223 (311)
T KOG0315|consen 147 NIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNK---GNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLL 223 (311)
T ss_pred cEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCC---ccEEEEEccCCCccccceEhhheecccceEEEEEE
Confidence 6888777654 3456667777778899999874444333333 45555554332 2222211 111 1 1222334
Q ss_pred ecCCCEEEEEeCCCCeEEEEeCCCCCe-EEEecCCCCceEEEEEE-CCEEEEEeCCCCeEEEEeCccCceeEEEe
Q psy13635 272 DVDNEKLYWCDAKTDKIEMIDFDGNNR-RELINENLPHVFGISLL-GDYVYWTDWQRRSIDRVNKITGNDREVII 344 (357)
Q Consensus 272 d~~~~~lY~~d~~~~~I~~~~~dG~~~-~~i~~~~~~~p~gia~~-~~~ly~td~~~~~I~~~~~~~g~~~~~i~ 344 (357)
.+ +++...+-+....+...+.++-.. +..+..+...-.+.++. ++.-.+|-...+.+.--+...|+.+....
T Consensus 224 SP-d~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~ 297 (311)
T KOG0315|consen 224 SP-DVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQ 297 (311)
T ss_pred CC-CCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecC
Confidence 43 444445555556777777777522 22333334456666665 34444444444444444555566554443
|
|
| >PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.043 Score=54.18 Aligned_cols=79 Identities=15% Similarity=0.249 Sum_probs=51.1
Q ss_pred eCCcCCceeEEEEcCCCeEEEEeCCCC-------------------EEEEEEcCCC-------ceEEEEecCCCC-----
Q psy13635 113 TNGLITPDGLAIDWLTEKLYWTDSETN-------------------KLEVSSLDGK-------KRKVLYWEDIDQ----- 161 (357)
Q Consensus 113 ~~~~~~p~glavd~~~~~ly~td~~~~-------------------~I~~~~~~g~-------~~~~~~~~~~~~----- 161 (357)
...+..|+++++++.++.+|++-+.++ +|+++..++. ..+.++..+-..
T Consensus 346 AT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~ 425 (524)
T PF05787_consen 346 ATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGN 425 (524)
T ss_pred cccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccc
Confidence 345789999999999999999975544 8888887765 222322221100
Q ss_pred cceeeeeccCcccccCCceEEEeCCCCeEEEEeCC
Q psy13635 162 PRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG 196 (357)
Q Consensus 162 p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~ 196 (357)
..... ....+..|.+|++|+ .|+||+++-.
T Consensus 426 ~~~~~----~~~~f~sPDNL~~d~-~G~LwI~eD~ 455 (524)
T PF05787_consen 426 GSNKC----DDNGFASPDNLAFDP-DGNLWIQEDG 455 (524)
T ss_pred ccCcc----cCCCcCCCCceEECC-CCCEEEEeCC
Confidence 00000 145678999999997 4667766433
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.82 Score=42.73 Aligned_cols=239 Identities=10% Similarity=0.014 Sum_probs=134.3
Q ss_pred eccCCCcEEEEEEEccC-CEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEE
Q psy13635 66 IIKDLEEGAAIDYYYKK-SMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVS 144 (357)
Q Consensus 66 ~~~~~~~~~~i~~d~~~-~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~ 144 (357)
....-....+++|+|.. +.=..+-..++.+.-..+++... ..-+.........++++|.++.|--+.. ..+=...
T Consensus 213 l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~---l~~l~gH~~RVs~VafHPsG~~L~Tasf-D~tWRlW 288 (459)
T KOG0272|consen 213 LRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETP---LQDLEGHLARVSRVAFHPSGKFLGTASF-DSTWRLW 288 (459)
T ss_pred EeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcc---hhhhhcchhhheeeeecCCCceeeeccc-ccchhhc
Confidence 33455678899999974 43334444556666666665431 1122233467788999986655543332 2222222
Q ss_pred EcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEE
Q psy13635 145 SLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAI 224 (357)
Q Consensus 145 ~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~gi 224 (357)
++... .+.+...+-. ....++++. ..|.|-.+......=++-|+.......++.+.+....++
T Consensus 289 D~~tk-~ElL~QEGHs---------------~~v~~iaf~-~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V 351 (459)
T KOG0272|consen 289 DLETK-SELLLQEGHS---------------KGVFSIAFQ-PDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSV 351 (459)
T ss_pred ccccc-hhhHhhcccc---------------cccceeEec-CCCceeeccCccchhheeecccCcEEEEecccccceeeE
Confidence 33221 1222222211 245677777 466777665544333334555555555666678889999
Q ss_pred EEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecC
Q psy13635 225 TLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINE 304 (357)
Q Consensus 225 avd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~ 304 (357)
+++| +|+..-|-...+..+|+... +....-.+....+....+.+++..|+..++-+..+.+..-...+-.....+.+
T Consensus 352 ~fsP-NGy~lATgs~Dnt~kVWDLR--~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaG 428 (459)
T KOG0272|consen 352 AFSP-NGYHLATGSSDNTCKVWDLR--MRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAG 428 (459)
T ss_pred eECC-CceEEeecCCCCcEEEeeec--ccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcC
Confidence 9998 58887777765434555444 44333333344455667888877888888888887777766554433333334
Q ss_pred CCCceEEEEEEC-CEEEEEeCCCCe
Q psy13635 305 NLPHVFGISLLG-DYVYWTDWQRRS 328 (357)
Q Consensus 305 ~~~~p~gia~~~-~~ly~td~~~~~ 328 (357)
.-....++++.. +....|....++
T Consensus 429 He~kV~s~Dis~d~~~i~t~s~DRT 453 (459)
T KOG0272|consen 429 HEGKVISLDISPDSQAIATSSFDRT 453 (459)
T ss_pred CccceEEEEeccCCceEEEeccCce
Confidence 555666777663 444444444333
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=1.2 Score=44.50 Aligned_cols=212 Identities=7% Similarity=-0.010 Sum_probs=117.9
Q ss_pred cCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCc-c----eeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEE
Q psy13635 68 KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNV-G----SKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLE 142 (357)
Q Consensus 68 ~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~----~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~ 142 (357)
........++|++..+.+..+-..++.|+..++..... . +....+...-.....+++++.+..++.+-+..+.|.
T Consensus 72 gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIr 151 (568)
T PTZ00420 72 GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVN 151 (568)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEE
Confidence 34456889999987666777777788888888753210 0 001122223345788999987777777777788999
Q ss_pred EEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCce
Q psy13635 143 VSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPR 222 (357)
Q Consensus 143 ~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~ 222 (357)
..++........+... .....+++++. |.++.+....+.|...++.......-.........
T Consensus 152 IWDl~tg~~~~~i~~~-----------------~~V~Slswspd-G~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~ 213 (568)
T PTZ00420 152 IWDIENEKRAFQINMP-----------------KKLSSLKWNIK-GNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKN 213 (568)
T ss_pred EEECCCCcEEEEEecC-----------------CcEEEEEECCC-CCEEEEEecCCEEEEEECCCCcEEEEEecccCCce
Confidence 9998755432211110 13567888864 45556655567888888875433222211111111
Q ss_pred EEE-----EeCCCCEEEEEeCCCC-CCeEEEEecCC--CceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCC
Q psy13635 223 AIT-----LSPAHGYLFWSDWNEK-RPKIERSLLNG--GERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFD 294 (357)
Q Consensus 223 gia-----vd~~~g~Ly~~d~~~~-~~~I~~~~~dg--~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~d 294 (357)
..+ +.+..++|.-+-.... .+.|...++.. ..........-..+.--..|+.++.+|++-.+.+.|+..+..
T Consensus 214 s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 214 TKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHS 293 (568)
T ss_pred eEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEcc
Confidence 112 1244445554443321 12455555542 212221111111111124566778999998889999999885
Q ss_pred CCC
Q psy13635 295 GNN 297 (357)
Q Consensus 295 G~~ 297 (357)
...
T Consensus 294 ~~~ 296 (568)
T PTZ00420 294 LGS 296 (568)
T ss_pred CCc
Confidence 443
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=1.2 Score=43.75 Aligned_cols=213 Identities=6% Similarity=-0.054 Sum_probs=119.3
Q ss_pred cCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcc----eeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEE
Q psy13635 68 KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVG----SKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEV 143 (357)
Q Consensus 68 ~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~----~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~ 143 (357)
..-....+++|++.++.+..+-..++.|...++...... .....+...-.....+++.+..++++++-..++.|..
T Consensus 73 GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrI 152 (493)
T PTZ00421 73 GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNV 152 (493)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEE
Confidence 345567899999855556667667788887776543210 0122233333456788998876778888778899999
Q ss_pred EEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCc-eEEEecCCCCCce
Q psy13635 144 SSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTH-RKVLVNTDLVEPR 222 (357)
Q Consensus 144 ~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~-~~~~~~~~~~~P~ 222 (357)
.++........+.. .-....++++.+ .+.+.++....+.|...|+.... ...+....-....
T Consensus 153 WDl~tg~~~~~l~~----------------h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~ 215 (493)
T PTZ00421 153 WDVERGKAVEVIKC----------------HSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQ 215 (493)
T ss_pred EECCCCeEEEEEcC----------------CCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcce
Confidence 99875433222211 112356778875 45666677777889888876433 2222211111223
Q ss_pred EEEEeCCCCEEEEEeCCC-CCCeEEEEecCCCc-eEEEeeCCC-CCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCC
Q psy13635 223 AITLSPAHGYLFWSDWNE-KRPKIERSLLNGGE-RVLLVKDRL-GWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNN 297 (357)
Q Consensus 223 giavd~~~g~Ly~~d~~~-~~~~I~~~~~dg~~-~~~~~~~~l-~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~ 297 (357)
.+...+..+.+..+-... ..+.|...++.... ......... .......+|+....||.+-.+.+.|+..++....
T Consensus 216 ~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 216 RCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred EEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 445555555555443211 12456666654322 111111111 1112235676677777776667888888886543
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=96.26 E-value=1.5 Score=44.02 Aligned_cols=204 Identities=14% Similarity=0.126 Sum_probs=120.5
Q ss_pred cceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCcee-EEEEcCCCeEEEEeCCCCE
Q psy13635 62 KPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDG-LAIDWLTEKLYWTDSETNK 140 (357)
Q Consensus 62 ~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~g-lavd~~~~~ly~td~~~~~ 140 (357)
....+...-+...+..|.| +++..++...+..++-.+++... -.+.-.|-..|.. +.|.| .|.-|.|-+..++
T Consensus 443 ~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s----~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~t 516 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWS----CLVIYKGHLAPVWDVQFAP-RGYYFATASHDQT 516 (707)
T ss_pred eeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccce----eEEEecCCCcceeeEEecC-CceEEEecCCCce
Confidence 3444556666788999988 45566676666777777776653 3344445555554 55664 4444444444444
Q ss_pred EEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC-CCeEEEEEcC-CCceEEEecCCC
Q psy13635 141 LEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG-TDRIEVCRLE-GTHRKVLVNTDL 218 (357)
Q Consensus 141 I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~-~~~I~~~~~~-g~~~~~~~~~~~ 218 (357)
-.....|......++ ..-+.....+++.|... |++..+ ..+++.-+.. |..++.+ .+..
T Consensus 517 ArLWs~d~~~PlRif----------------aghlsDV~cv~FHPNs~--Y~aTGSsD~tVRlWDv~~G~~VRiF-~GH~ 577 (707)
T KOG0263|consen 517 ARLWSTDHNKPLRIF----------------AGHLSDVDCVSFHPNSN--YVATGSSDRTVRLWDVSTGNSVRIF-TGHK 577 (707)
T ss_pred eeeeecccCCchhhh----------------cccccccceEEECCccc--ccccCCCCceEEEEEcCCCcEEEEe-cCCC
Confidence 333444444443333 23344666788886544 444333 4455555544 4444444 4445
Q ss_pred CCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCC
Q psy13635 219 VEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFD 294 (357)
Q Consensus 219 ~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~d 294 (357)
.....++++|.+.+|--.+.. +.|..-++.++.........-..-..|.+. .+|.+.++....+.|..-|..
T Consensus 578 ~~V~al~~Sp~Gr~LaSg~ed---~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS-~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 578 GPVTALAFSPCGRYLASGDED---GLIKIWDLANGSLVKQLKGHTGTIYSLSFS-RDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred CceEEEEEcCCCceEeecccC---CcEEEEEcCCCcchhhhhcccCceeEEEEe-cCCCEEEecCCCCeEEEEEch
Confidence 566799999864334333332 678888887655543333335566788887 678888999888888887764
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=96.22 E-value=1.1 Score=42.25 Aligned_cols=229 Identities=10% Similarity=0.083 Sum_probs=113.9
Q ss_pred CCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcC-CCceEEEEecCCC
Q psy13635 82 KSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD-GKKRKVLYWEDID 160 (357)
Q Consensus 82 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~-g~~~~~~~~~~~~ 160 (357)
++.+|+... ++.++.++.+.+. .....-..+. .....+++ ++.+|+.. ..+.++.++.. |+..-..- . .
T Consensus 105 ~~~v~v~~~-~g~l~ald~~tG~--~~W~~~~~~~-~~~~p~v~--~~~v~v~~-~~g~l~a~d~~tG~~~W~~~-~--~ 174 (377)
T TIGR03300 105 GGLVFVGTE-KGEVIALDAEDGK--ELWRAKLSSE-VLSPPLVA--NGLVVVRT-NDGRLTALDAATGERLWTYS-R--V 174 (377)
T ss_pred CCEEEEEcC-CCEEEEEECCCCc--EeeeeccCce-eecCCEEE--CCEEEEEC-CCCeEEEEEcCCCceeeEEc-c--C
Confidence 678887654 4678888875332 1121111111 01112333 56777754 46778888874 44321111 0 0
Q ss_pred CcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcC-CCceEEEecC-CC--C-------CceEEEEeCC
Q psy13635 161 QPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLE-GTHRKVLVNT-DL--V-------EPRAITLSPA 229 (357)
Q Consensus 161 ~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~-g~~~~~~~~~-~~--~-------~P~giavd~~ 229 (357)
.+ .+ ........++. ++.+|+... .+++..+++. |+..-..... .. . ......++
T Consensus 175 ~~-~~--------~~~~~~sp~~~--~~~v~~~~~-~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~-- 240 (377)
T TIGR03300 175 TP-AL--------TLRGSASPVIA--DGGVLVGFA-GGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD-- 240 (377)
T ss_pred CC-ce--------eecCCCCCEEE--CCEEEEECC-CCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE--
Confidence 00 00 00000111222 346665443 3567777763 4332111000 00 0 00112233
Q ss_pred CCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCC--
Q psy13635 230 HGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLP-- 307 (357)
Q Consensus 230 ~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~-- 307 (357)
++.+|.+... +.+...+...... +.......+...++ .+++||+.+ ..+.++.++.+.....--. +.+.
T Consensus 241 ~~~vy~~~~~---g~l~a~d~~tG~~--~W~~~~~~~~~p~~--~~~~vyv~~-~~G~l~~~d~~tG~~~W~~-~~~~~~ 311 (377)
T TIGR03300 241 GGQVYAVSYQ---GRVAALDLRSGRV--LWKRDASSYQGPAV--DDNRLYVTD-ADGVVVALDRRSGSELWKN-DELKYR 311 (377)
T ss_pred CCEEEEEEcC---CEEEEEECCCCcE--EEeeccCCccCceE--eCCEEEEEC-CCCeEEEEECCCCcEEEcc-ccccCC
Confidence 5789998876 5788888753322 22222233344455 478999987 4678999998533221111 0111
Q ss_pred ceEEEEEECCEEEEEeCCCCeEEEEeCccCceeEEEe
Q psy13635 308 HVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVII 344 (357)
Q Consensus 308 ~p~gia~~~~~ly~td~~~~~I~~~~~~~g~~~~~i~ 344 (357)
......+.++.+|+.+ .++.|+.++..+|+....+.
T Consensus 312 ~~ssp~i~g~~l~~~~-~~G~l~~~d~~tG~~~~~~~ 347 (377)
T TIGR03300 312 QLTAPAVVGGYLVVGD-FEGYLHWLSREDGSFVARLK 347 (377)
T ss_pred ccccCEEECCEEEEEe-CCCEEEEEECCCCCEEEEEE
Confidence 1122345688999887 44789999987888776553
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=1.3 Score=42.20 Aligned_cols=225 Identities=14% Similarity=0.136 Sum_probs=114.5
Q ss_pred CCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcC-CCceEEEEecCCC
Q psy13635 82 KSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD-GKKRKVLYWEDID 160 (357)
Q Consensus 82 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~-g~~~~~~~~~~~~ 160 (357)
++++|+.+. ++.++.++.+.+.. ....-..+.. -...++. ++.+|+.. .++++..++.. |+..=.. .. .
T Consensus 120 ~~~v~v~~~-~g~l~ald~~tG~~--~W~~~~~~~~-~ssP~v~--~~~v~v~~-~~g~l~ald~~tG~~~W~~-~~--~ 189 (394)
T PRK11138 120 GGKVYIGSE-KGQVYALNAEDGEV--AWQTKVAGEA-LSRPVVS--DGLVLVHT-SNGMLQALNESDGAVKWTV-NL--D 189 (394)
T ss_pred CCEEEEEcC-CCEEEEEECCCCCC--cccccCCCce-ecCCEEE--CCEEEEEC-CCCEEEEEEccCCCEeeee-cC--C
Confidence 688888763 46788888754321 1221111110 1122343 56777755 45678888874 4432111 11 1
Q ss_pred CcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcC-CCceEEE--ecC-----------CCCCceEEEE
Q psy13635 161 QPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLE-GTHRKVL--VNT-----------DLVEPRAITL 226 (357)
Q Consensus 161 ~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~-g~~~~~~--~~~-----------~~~~P~giav 226 (357)
.|. +. ......| +++ ++.+|+... .+++..++.. |+..-.. ... ....| .+
T Consensus 190 ~~~-~~-----~~~~~sP---~v~--~~~v~~~~~-~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP---~v 254 (394)
T PRK11138 190 VPS-LT-----LRGESAP---ATA--FGGAIVGGD-NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTP---VV 254 (394)
T ss_pred CCc-cc-----ccCCCCC---EEE--CCEEEEEcC-CCEEEEEEccCChhhheeccccCCCccchhcccccCCCc---EE
Confidence 000 00 0001122 222 345666543 3556665544 3322111 000 00122 23
Q ss_pred eCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCC
Q psy13635 227 SPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENL 306 (357)
Q Consensus 227 d~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~ 306 (357)
. ++.+|++... +.+...+...... +....+..+..+++ .+++||+.+. .+.++.++.......-- .+..
T Consensus 255 ~--~~~vy~~~~~---g~l~ald~~tG~~--~W~~~~~~~~~~~~--~~~~vy~~~~-~g~l~ald~~tG~~~W~-~~~~ 323 (394)
T PRK11138 255 V--GGVVYALAYN---GNLVALDLRSGQI--VWKREYGSVNDFAV--DGGRIYLVDQ-NDRVYALDTRGGVELWS-QSDL 323 (394)
T ss_pred E--CCEEEEEEcC---CeEEEEECCCCCE--EEeecCCCccCcEE--ECCEEEEEcC-CCeEEEEECCCCcEEEc-cccc
Confidence 3 5889988765 5788888764422 23333344444555 4789999875 57899998854322110 1111
Q ss_pred --CceEEEEEECCEEEEEeCCCCeEEEEeCccCceeEEE
Q psy13635 307 --PHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVI 343 (357)
Q Consensus 307 --~~p~gia~~~~~ly~td~~~~~I~~~~~~~g~~~~~i 343 (357)
....+.++.++.||+.+. .+.|+.++..+|+.....
T Consensus 324 ~~~~~~sp~v~~g~l~v~~~-~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 324 LHRLLTAPVLYNGYLVVGDS-EGYLHWINREDGRFVAQQ 361 (394)
T ss_pred CCCcccCCEEECCEEEEEeC-CCEEEEEECCCCCEEEEE
Confidence 112233456889998874 478888998888866543
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=96.05 E-value=1.1 Score=40.71 Aligned_cols=193 Identities=14% Similarity=0.129 Sum_probs=117.6
Q ss_pred EEEcCCCeEEEEeC----CCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCC
Q psy13635 123 AIDWLTEKLYWTDS----ETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTD 198 (357)
Q Consensus 123 avd~~~~~ly~td~----~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~ 198 (357)
++++.++.||.|+. +.+.|.+.+...+..++--.. . ..-.|..|.+.+.+..|.+++.+-.
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~--------------s-~GIGPHel~l~pDG~tLvVANGGI~ 121 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFP--------------S-HGIGPHELLLMPDGETLVVANGGIE 121 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEec--------------C-CCcChhhEEEcCCCCEEEEEcCCCc
Confidence 46667888998864 468899999885555442211 1 1236889999887779999886621
Q ss_pred -----------------eEEEE-EcCCCceEEEec-C--CCCCceEEEEeCCCCEEEEEeCCCC-----CCeEEEEecCC
Q psy13635 199 -----------------RIEVC-RLEGTHRKVLVN-T--DLVEPRAITLSPAHGYLFWSDWNEK-----RPKIERSLLNG 252 (357)
Q Consensus 199 -----------------~I~~~-~~~g~~~~~~~~-~--~~~~P~giavd~~~g~Ly~~d~~~~-----~~~I~~~~~dg 252 (357)
.+... ..+|+....... . ....-+-|+++.. |.+.++..... ..-+.....++
T Consensus 122 Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~-G~V~~a~Q~qg~~~~~~PLva~~~~g~ 200 (305)
T PF07433_consen 122 THPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGD-GTVAFAMQYQGDPGDAPPLVALHRRGG 200 (305)
T ss_pred cCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCC-CcEEEEEecCCCCCccCCeEEEEcCCC
Confidence 22333 233443333211 1 1224678999964 88888765432 12233333332
Q ss_pred CceEEEee-C----C-CCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEECCEEEEEeCCC
Q psy13635 253 GERVLLVK-D----R-LGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQR 326 (357)
Q Consensus 253 ~~~~~~~~-~----~-l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~~~~ly~td~~~ 326 (357)
. .+.+-. . . -.+.-+|+++...+.+.+|....+++...+.+.... +....+....|++...+. |+..++.
T Consensus 201 ~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~--~~~~~l~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 201 A-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRL--LGSVPLPDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred c-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCE--eeccccCceeeeeecCCc-eEEeCCC
Confidence 2 222111 1 1 245668999977778889999999999997644333 222357788899988655 5556677
Q ss_pred CeEEEEeCc
Q psy13635 327 RSIDRVNKI 335 (357)
Q Consensus 327 ~~I~~~~~~ 335 (357)
|.+......
T Consensus 277 G~~~~~~~~ 285 (305)
T PF07433_consen 277 GQLIRLSPD 285 (305)
T ss_pred ccEEEccCc
Confidence 888887763
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.92 Score=39.44 Aligned_cols=186 Identities=15% Similarity=0.150 Sum_probs=102.7
Q ss_pred cCCEEEEEeCCCCeEEEEEcCCCCcceeEE-EEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEE-cCCCceEEEEecC
Q psy13635 81 KKSMVCWTDHGTEMISCCTFDGNNVGSKHN-VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSS-LDGKKRKVLYWED 158 (357)
Q Consensus 81 ~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~ 158 (357)
.++.+|.++ ..+.|+.++...+. ...+ .+...+..+ ..++ ++.+|+... .++|..++ .+|...-......
T Consensus 35 ~~~~v~~~~-~~~~l~~~d~~tG~--~~W~~~~~~~~~~~--~~~~--~~~v~v~~~-~~~l~~~d~~tG~~~W~~~~~~ 106 (238)
T PF13360_consen 35 DGGRVYVAS-GDGNLYALDAKTGK--VLWRFDLPGPISGA--PVVD--GGRVYVGTS-DGSLYALDAKTGKVLWSIYLTS 106 (238)
T ss_dssp ETTEEEEEE-TTSEEEEEETTTSE--EEEEEECSSCGGSG--EEEE--TTEEEEEET-TSEEEEEETTTSCEEEEEEE-S
T ss_pred eCCEEEEEc-CCCEEEEEECCCCC--EEEEeeccccccce--eeec--ccccccccc-eeeeEecccCCcceeeeecccc
Confidence 378888885 56788888874432 1122 222233333 3554 788988874 34899999 5565543322211
Q ss_pred CCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcC-CCceEEEecCC--CCC--------ceEEEEe
Q psy13635 159 IDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLE-GTHRKVLVNTD--LVE--------PRAITLS 227 (357)
Q Consensus 159 ~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~-g~~~~~~~~~~--~~~--------P~giavd 227 (357)
. + ...+..+...+++ ++.+|+... .+.|..+++. |+..-...... ... ...+.++
T Consensus 107 ~-~----------~~~~~~~~~~~~~--~~~~~~~~~-~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (238)
T PF13360_consen 107 S-P----------PAGVRSSSSPAVD--GDRLYVGTS-SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS 172 (238)
T ss_dssp S-C----------TCSTB--SEEEEE--TTEEEEEET-CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC
T ss_pred c-c----------ccccccccCceEe--cCEEEEEec-cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE
Confidence 0 0 1112344555555 677887775 4678888865 54433222111 001 1233333
Q ss_pred CCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCC
Q psy13635 228 PAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNN 297 (357)
Q Consensus 228 ~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~ 297 (357)
++.+|++... +.+..++....... .......+.++.. ..++.||+.+ ..+.++.+|+....
T Consensus 173 --~~~v~~~~~~---g~~~~~d~~tg~~~--w~~~~~~~~~~~~-~~~~~l~~~~-~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 173 --DGRVYVSSGD---GRVVAVDLATGEKL--WSKPISGIYSLPS-VDGGTLYVTS-SDGRLYALDLKTGK 233 (238)
T ss_dssp --TTEEEEECCT---SSEEEEETTTTEEE--EEECSS-ECECEE-CCCTEEEEEE-TTTEEEEEETTTTE
T ss_pred --CCEEEEEcCC---CeEEEEECCCCCEE--EEecCCCccCCce-eeCCEEEEEe-CCCEEEEEECCCCC
Confidence 5699998876 34555576665533 2222444444222 4789999998 67899999876543
|
... |
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.47 Score=41.78 Aligned_cols=141 Identities=18% Similarity=0.147 Sum_probs=81.5
Q ss_pred EEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEee
Q psy13635 181 VAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVK 260 (357)
Q Consensus 181 lavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~ 260 (357)
+|||+..|++||-..-..||+... .+. +++ +.+-..+|.||+-+..+. .+++....-++....
T Consensus 36 ~avd~~sG~~~We~ilg~RiE~sa-------~vv-gdf-----VV~GCy~g~lYfl~~~tG-s~~w~f~~~~~vk~~--- 98 (354)
T KOG4649|consen 36 IAVDPQSGNLIWEAILGVRIECSA-------IVV-GDF-----VVLGCYSGGLYFLCVKTG-SQIWNFVILETVKVR--- 98 (354)
T ss_pred EEecCCCCcEEeehhhCceeeeee-------EEE-CCE-----EEEEEccCcEEEEEecch-hheeeeeehhhhccc---
Confidence 588999999999877667776532 222 122 566667899999998864 577776654432211
Q ss_pred CCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCc--eEE--EEEECCEEEEEeCCCCeEEEEeCcc
Q psy13635 261 DRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPH--VFG--ISLLGDYVYWTDWQRRSIDRVNKIT 336 (357)
Q Consensus 261 ~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~--p~g--ia~~~~~ly~td~~~~~I~~~~~~~ 336 (357)
-..|.+++.||. -+..+..+..|+..... +...+.+. -.+ |+.-.+.||++-.. |.|.++++.+
T Consensus 99 --------a~~d~~~glIyc-gshd~~~yalD~~~~~c--VykskcgG~~f~sP~i~~g~~sly~a~t~-G~vlavt~~~ 166 (354)
T KOG4649|consen 99 --------AQCDFDGGLIYC-GSHDGNFYALDPKTYGC--VYKSKCGGGTFVSPVIAPGDGSLYAAITA-GAVLAVTKNP 166 (354)
T ss_pred --------eEEcCCCceEEE-ecCCCcEEEecccccce--EEecccCCceeccceecCCCceEEEEecc-ceEEEEccCC
Confidence 124434444443 34455566666543332 11111111 111 33335789998754 7888888877
Q ss_pred CceeEEEecccCCc
Q psy13635 337 GNDREVIIERSCTG 350 (357)
Q Consensus 337 g~~~~~i~~~l~~p 350 (357)
+...+.......+|
T Consensus 167 ~~~~~~w~~~~~~P 180 (354)
T KOG4649|consen 167 YSSTEFWAATRFGP 180 (354)
T ss_pred CCcceehhhhcCCc
Confidence 76666555544444
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.99 Score=39.48 Aligned_cols=251 Identities=13% Similarity=0.087 Sum_probs=135.5
Q ss_pred ecCCCCeEEEEEeCCcEEEEEcCCCCc-ceEeccC-CCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEe
Q psy13635 36 SHHVAAQMLLFATSKDIRIANLSRPLK-PVTIIKD-LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT 113 (357)
Q Consensus 36 ~~~~~~~~l~~~~~~~i~~~~~~~~~~-~~~~~~~-~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~ 113 (357)
...+++.+|..+....|+.+|+..+.. .....+. -++..++.|..++..+ ++...++.++.-++..-. .+....
T Consensus 47 eiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWM-yTgseDgt~kIWdlR~~~---~qR~~~ 122 (311)
T KOG0315|consen 47 EITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWM-YTGSEDGTVKIWDLRSLS---CQRNYQ 122 (311)
T ss_pred EEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEE-EecCCCceEEEEeccCcc---cchhcc
Confidence 344555666666667799999987543 3333333 3678899998755544 466677777777776543 122222
Q ss_pred CCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCC-ceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEE
Q psy13635 114 NGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGK-KRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYW 192 (357)
Q Consensus 114 ~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~-~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~ 192 (357)
.. .-...+.+.+....|+.+|. ++.|.+.++... ....++++. ......++|+|.+..|-
T Consensus 123 ~~-spVn~vvlhpnQteLis~dq-sg~irvWDl~~~~c~~~liPe~----------------~~~i~sl~v~~dgsml~- 183 (311)
T KOG0315|consen 123 HN-SPVNTVVLHPNQTELISGDQ-SGNIRVWDLGENSCTHELIPED----------------DTSIQSLTVMPDGSMLA- 183 (311)
T ss_pred CC-CCcceEEecCCcceEEeecC-CCcEEEEEccCCccccccCCCC----------------CcceeeEEEcCCCcEEE-
Confidence 22 34566888888888888885 678998888655 233343332 23456778886554444
Q ss_pred EeCCCCeEEEEEcCC-CceEEEec-----CCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCC-ceEEEeeCCCCC
Q psy13635 193 TDTGTDRIEVCRLEG-THRKVLVN-----TDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGG-ERVLLVKDRLGW 265 (357)
Q Consensus 193 td~~~~~I~~~~~~g-~~~~~~~~-----~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~-~~~~~~~~~l~~ 265 (357)
+-...++-++-++-+ .....+.. ..-.+....-++|...+| .|.... ..+...+.++- ..+..+..+-.+
T Consensus 184 a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~l-at~ssd--ktv~iwn~~~~~kle~~l~gh~rW 260 (311)
T KOG0315|consen 184 AANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYL-ATCSSD--KTVKIWNTDDFFKLELVLTGHQRW 260 (311)
T ss_pred EecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEE-EeecCC--ceEEEEecCCceeeEEEeecCCce
Confidence 333344444443332 11111111 112234456677764444 333332 36666666665 223333344456
Q ss_pred ceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEE
Q psy13635 266 PNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGIS 313 (357)
Q Consensus 266 P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia 313 (357)
.-+-++..++.+| ++-+..+.+..-++.............+.+..++
T Consensus 261 vWdc~FS~dg~Yl-vTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ 307 (311)
T KOG0315|consen 261 VWDCAFSADGEYL-VTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVA 307 (311)
T ss_pred EEeeeeccCccEE-EecCCCCceeecccccCceeeecCCcccccEEEE
Confidence 6677776444444 4443345555555544333333333344444333
|
|
| >PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.034 Score=40.56 Aligned_cols=36 Identities=22% Similarity=0.401 Sum_probs=31.6
Q ss_pred eeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCC
Q psy13635 259 VKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFD 294 (357)
Q Consensus 259 ~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~d 294 (357)
+.+++..|+||++++....||+++...+.|+.....
T Consensus 49 va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 49 VASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred eeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 447889999999999999999999999999888653
|
The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=2.4 Score=42.76 Aligned_cols=187 Identities=16% Similarity=0.113 Sum_probs=106.2
Q ss_pred CCceeEEEEcCCCeEEEEeC-------CCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCe
Q psy13635 117 ITPDGLAIDWLTEKLYWTDS-------ETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARN 189 (357)
Q Consensus 117 ~~p~glavd~~~~~ly~td~-------~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~ 189 (357)
..+...++.+.++.+.++.. ...+|+..+..|..........+. .| .+++.++.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~t----------------~P---sWspDG~~ 410 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSLT----------------RP---SWSLDADA 410 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCCC----------------Cc---eECCCCCc
Confidence 46778889888888766652 234788877766553332111111 22 34444455
Q ss_pred EEEEeCC-----------CCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEE---EecCCCce
Q psy13635 190 LYWTDTG-----------TDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIER---SLLNGGER 255 (357)
Q Consensus 190 lY~td~~-----------~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~---~~~dg~~~ 255 (357)
|++...+ .+.+++...++..... ..-..+..+.++|+..+|.+.-. ++|+. ...+++.
T Consensus 411 lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~----g~v~Va~Vvr~~~G~- 482 (591)
T PRK13616 411 VWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIG----GKVYLAVVEQTEDGQ- 482 (591)
T ss_pred eEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEEC----CEEEEEEEEeCCCCc-
Confidence 5544222 2345555555433322 11135888999998888888763 36666 4434433
Q ss_pred EEE-----eeCCCCC-ceEEEEecCCCEEEEEeCC-CCeEEEEeCCCCCeEEEecCCCCce-EEEEEECCEEEEEeCCCC
Q psy13635 256 VLL-----VKDRLGW-PNGITLDVDNEKLYWCDAK-TDKIEMIDFDGNNRRELINENLPHV-FGISLLGDYVYWTDWQRR 327 (357)
Q Consensus 256 ~~~-----~~~~l~~-P~giaid~~~~~lY~~d~~-~~~I~~~~~dG~~~~~i~~~~~~~p-~gia~~~~~ly~td~~~~ 327 (357)
..+ +...+.. +..++-- .++.|++.... ...++.+.+||...+.+...++..| ..|+-..+.+|++|..
T Consensus 483 ~~l~~~~~l~~~l~~~~~~l~W~-~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~~iyv~~~~-- 559 (591)
T PRK13616 483 YALTNPREVGPGLGDTAVSLDWR-TGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPSTVYVTDAR-- 559 (591)
T ss_pred eeecccEEeecccCCccccceEe-cCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCceEEEEcCC--
Confidence 222 2233443 4666664 56778776543 3569999999988664333333333 4566666789999855
Q ss_pred eEEEEe
Q psy13635 328 SIDRVN 333 (357)
Q Consensus 328 ~I~~~~ 333 (357)
.+....
T Consensus 560 g~~~l~ 565 (591)
T PRK13616 560 AVLQLP 565 (591)
T ss_pred ceEEec
Confidence 455554
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=95.79 E-value=1.8 Score=40.88 Aligned_cols=217 Identities=12% Similarity=0.120 Sum_probs=111.8
Q ss_pred CCEEEEEeCCCCeEEEEEcCCCCcceeEE-EEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcC-CCceEEEEecCC
Q psy13635 82 KSMVCWTDHGTEMISCCTFDGNNVGSKHN-VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD-GKKRKVLYWEDI 159 (357)
Q Consensus 82 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~-g~~~~~~~~~~~ 159 (357)
++++|+.+.. +.++.++...+. .... -+.... ..+++++ ++.+|+... ++.++.++.+ |+..-.. ..
T Consensus 65 ~~~v~v~~~~-g~v~a~d~~tG~--~~W~~~~~~~~--~~~p~v~--~~~v~v~~~-~g~l~ald~~tG~~~W~~---~~ 133 (377)
T TIGR03300 65 GGKVYAADAD-GTVVALDAETGK--RLWRVDLDERL--SGGVGAD--GGLVFVGTE-KGEVIALDAEDGKELWRA---KL 133 (377)
T ss_pred CCEEEEECCC-CeEEEEEccCCc--EeeeecCCCCc--ccceEEc--CCEEEEEcC-CCEEEEEECCCCcEeeee---cc
Confidence 6788887654 678888864332 1111 122221 2345666 788888764 5788888874 5433211 11
Q ss_pred CCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcC-CCceEEEecCC----CCCceEEEEeCCCCEEE
Q psy13635 160 DQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLE-GTHRKVLVNTD----LVEPRAITLSPAHGYLF 234 (357)
Q Consensus 160 ~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~-g~~~~~~~~~~----~~~P~giavd~~~g~Ly 234 (357)
.. .....| +++ ++.+|+... .+.+...+.. |+..-...... .......++. ++.+|
T Consensus 134 ~~-----------~~~~~p---~v~--~~~v~v~~~-~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~ 194 (377)
T TIGR03300 134 SS-----------EVLSPP---LVA--NGLVVVRTN-DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVL 194 (377)
T ss_pred Cc-----------eeecCC---EEE--CCEEEEECC-CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEE
Confidence 00 000112 222 456776543 4567777763 44332221110 0000111222 35677
Q ss_pred EEeCCCCCCeEEEEecC-CCceEEEeeCCCCCc-------------eEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEE
Q psy13635 235 WSDWNEKRPKIERSLLN-GGERVLLVKDRLGWP-------------NGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRE 300 (357)
Q Consensus 235 ~~d~~~~~~~I~~~~~d-g~~~~~~~~~~l~~P-------------~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~ 300 (357)
+.... +.+...++. |...... ....| ....+ .++.+|++.. .+.++.++.......-
T Consensus 195 ~~~~~---g~v~ald~~tG~~~W~~---~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~-~g~l~a~d~~tG~~~W 265 (377)
T TIGR03300 195 VGFAG---GKLVALDLQTGQPLWEQ---RVALPKGRTELERLVDVDGDPVV--DGGQVYAVSY-QGRVAALDLRSGRVLW 265 (377)
T ss_pred EECCC---CEEEEEEccCCCEeeee---ccccCCCCCchhhhhccCCccEE--ECCEEEEEEc-CCEEEEEECCCCcEEE
Confidence 66543 477777764 3322111 11111 01123 3688998875 4688888874322211
Q ss_pred EecCCCCceEEEEEECCEEEEEeCCCCeEEEEeCccCcee
Q psy13635 301 LINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDR 340 (357)
Q Consensus 301 i~~~~~~~p~gia~~~~~ly~td~~~~~I~~~~~~~g~~~ 340 (357)
-. ....+...++.++++|+.+ ..+.|+.++..+|+..
T Consensus 266 ~~--~~~~~~~p~~~~~~vyv~~-~~G~l~~~d~~tG~~~ 302 (377)
T TIGR03300 266 KR--DASSYQGPAVDDNRLYVTD-ADGVVVALDRRSGSEL 302 (377)
T ss_pred ee--ccCCccCceEeCCEEEEEC-CCCeEEEEECCCCcEE
Confidence 11 1233445567889999986 4578999998778754
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=2.1 Score=40.71 Aligned_cols=134 Identities=13% Similarity=0.091 Sum_probs=75.5
Q ss_pred CCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCC-CC-
Q psy13635 187 ARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDR-LG- 264 (357)
Q Consensus 187 ~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~-l~- 264 (357)
++.+|++... +.+..+++..... +-...+..+..++++ +++||+++.. +++..++...... +.... +.
T Consensus 256 ~~~vy~~~~~-g~l~ald~~tG~~--~W~~~~~~~~~~~~~--~~~vy~~~~~---g~l~ald~~tG~~--~W~~~~~~~ 325 (394)
T PRK11138 256 GGVVYALAYN-GNLVALDLRSGQI--VWKREYGSVNDFAVD--GGRIYLVDQN---DRVYALDTRGGVE--LWSQSDLLH 325 (394)
T ss_pred CCEEEEEEcC-CeEEEEECCCCCE--EEeecCCCccCcEEE--CCEEEEEcCC---CeEEEEECCCCcE--EEcccccCC
Confidence 5789987753 5788887753321 111122334445555 6899999865 5888888864432 22111 10
Q ss_pred -CceEEEEecCCCEEEEEeCCCCeEEEEeC-CCCCeEEEecCCCCceEEEEEECCEEEEEeCCCCeEEEEeC
Q psy13635 265 -WPNGITLDVDNEKLYWCDAKTDKIEMIDF-DGNNRRELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 265 -~P~giaid~~~~~lY~~d~~~~~I~~~~~-dG~~~~~i~~~~~~~p~gia~~~~~ly~td~~~~~I~~~~~ 334 (357)
...+.++ .+++||+.+. .+.++.++. +|...-..-.....-...-.+.+++||+.+. .|.|+.++.
T Consensus 326 ~~~~sp~v--~~g~l~v~~~-~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~~~~l~v~t~-~G~l~~~~~ 393 (394)
T PRK11138 326 RLLTAPVL--YNGYLVVGDS-EGYLHWINREDGRFVAQQKVDSSGFLSEPVVADDKLLIQAR-DGTVYAITR 393 (394)
T ss_pred CcccCCEE--ECCEEEEEeC-CCEEEEEECCCCCEEEEEEcCCCcceeCCEEECCEEEEEeC-CceEEEEeC
Confidence 1112233 3789999875 568888887 4433222111111112233456889999964 478888764
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.62 E-value=1.2 Score=37.92 Aligned_cols=66 Identities=17% Similarity=0.181 Sum_probs=46.6
Q ss_pred eCCCCeEEEEeCCCCeEEEEEcCCCceEEEec------------CCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecC
Q psy13635 184 DWVARNLYWTDTGTDRIEVCRLEGTHRKVLVN------------TDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLN 251 (357)
Q Consensus 184 D~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~------------~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~d 251 (357)
.|..|.||.--+.+.+|.+++++.......+. ...+-++|||.+|..+++|+|-..= +.++-+.++
T Consensus 182 E~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~w--p~lfEVk~~ 259 (262)
T COG3823 182 EWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKLW--PLLFEVKLD 259 (262)
T ss_pred eeeccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCcC--ceeEEEEec
Confidence 45678999777888899999998554433222 1234789999999999999996552 355555443
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.60 E-value=2.3 Score=40.94 Aligned_cols=180 Identities=14% Similarity=0.084 Sum_probs=91.5
Q ss_pred cEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCC---CeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcC
Q psy13635 51 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGT---EMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 127 (357)
Q Consensus 51 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~---~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~ 127 (357)
+++..|-++. ....+.........-.+.+...++.+..... .+|+..+++.+. ...+.+-...-...++.+.
T Consensus 174 ~l~~~D~dg~-~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~----~~~i~~~~g~~~~P~fspD 248 (425)
T COG0823 174 ELALGDYDGY-NQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGK----RPVILNFNGNNGAPAFSPD 248 (425)
T ss_pred eEEEEccCCc-ceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCc----cceeeccCCccCCccCCCC
Confidence 4555565542 2222222222223334445555554443322 247777777664 3333332223344567777
Q ss_pred CCeEEEEeC--CCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCC--eEEEE
Q psy13635 128 TEKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTD--RIEVC 203 (357)
Q Consensus 128 ~~~ly~td~--~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~--~I~~~ 203 (357)
+++|.++-. ++-.|+.++++++....+.. ..++. . .=.+-|.+.+|+++....+ .|+++
T Consensus 249 G~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~-----~~gi~----------~--~Ps~spdG~~ivf~Sdr~G~p~I~~~ 311 (425)
T COG0823 249 GSKLAFSSSRDGSPDIYLMDLDGKNLPRLTN-----GFGIN----------T--SPSWSPDGSKIVFTSDRGGRPQIYLY 311 (425)
T ss_pred CCEEEEEECCCCCccEEEEcCCCCcceeccc-----CCccc----------c--CccCCCCCCEEEEEeCCCCCcceEEE
Confidence 788877654 34578889998887554321 11111 1 1123345667766543333 89999
Q ss_pred EcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCC
Q psy13635 204 RLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGG 253 (357)
Q Consensus 204 ~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~ 253 (357)
+++|+..+.+.... .....-.++|...+|-+.........|...++...
T Consensus 312 ~~~g~~~~riT~~~-~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 312 DLEGSQVTRLTFSG-GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred CCCCCceeEeeccC-CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCC
Confidence 99998876555432 22223345666555555553211123555555433
|
|
| >PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.039 Score=40.21 Aligned_cols=38 Identities=24% Similarity=0.305 Sum_probs=34.0
Q ss_pred EEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEc
Q psy13635 109 HNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSL 146 (357)
Q Consensus 109 ~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~ 146 (357)
...+..++..|.||++++.++.||+++...+.|.+...
T Consensus 46 ~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~ 83 (86)
T PF01731_consen 46 VKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKR 83 (86)
T ss_pred eEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence 55778889999999999999999999999999988764
|
The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity |
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=95.46 E-value=1.1 Score=41.11 Aligned_cols=269 Identities=13% Similarity=0.125 Sum_probs=150.3
Q ss_pred EEeecCCCCeEEEEEe--CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEE
Q psy13635 33 YALSHHVAAQMLLFAT--SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHN 110 (357)
Q Consensus 33 ~~~~~~~~~~~l~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~ 110 (357)
+|++-++.....+++. +.+++..|++.-..........+...||.++. +..+++.| +..|.+..++|-. ..+
T Consensus 70 ~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgd--DKtvK~wk~~~~p---~~t 143 (433)
T KOG0268|consen 70 SCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGD--DKTVKQWKIDGPP---LHT 143 (433)
T ss_pred chhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-cceEEecC--CcceeeeeccCCc---cee
Confidence 3455554444444443 45677888865333444445666788888875 55555544 3456666666642 133
Q ss_pred EEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeE
Q psy13635 111 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNL 190 (357)
Q Consensus 111 ~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~l 190 (357)
++... .-.||.-.+ .+.+|.|... .|...+..-.....-..- +......+.+.|..-.|
T Consensus 144 ilg~s--~~~gIdh~~-~~~~FaTcGe--~i~IWD~~R~~Pv~smsw----------------G~Dti~svkfNpvETsI 202 (433)
T KOG0268|consen 144 ILGKS--VYLGIDHHR-KNSVFATCGE--QIDIWDEQRDNPVSSMSW----------------GADSISSVKFNPVETSI 202 (433)
T ss_pred eeccc--ccccccccc-ccccccccCc--eeeecccccCCccceeec----------------CCCceeEEecCCCcchh
Confidence 33221 223444443 4455655533 333333322222111111 11122445556666677
Q ss_pred EEEeCCCCeEEEEEcCC-CceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEE-eeCCCCCceE
Q psy13635 191 YWTDTGTDRIEVCRLEG-THRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLL-VKDRLGWPNG 268 (357)
Q Consensus 191 Y~td~~~~~I~~~~~~g-~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~-~~~~l~~P~g 268 (357)
..+....+.|..+|+.- +..+.++. ...+++|+.+| ++..|++-... ..++..++.--....- .....+....
T Consensus 203 Las~~sDrsIvLyD~R~~~Pl~KVi~--~mRTN~IswnP-eafnF~~a~ED--~nlY~~DmR~l~~p~~v~~dhvsAV~d 277 (433)
T KOG0268|consen 203 LASCASDRSIVLYDLRQASPLKKVIL--TMRTNTICWNP-EAFNFVAANED--HNLYTYDMRNLSRPLNVHKDHVSAVMD 277 (433)
T ss_pred eeeeccCCceEEEecccCCccceeee--eccccceecCc-cccceeecccc--ccceehhhhhhcccchhhcccceeEEE
Confidence 77776677888888763 33333332 25789999999 79999887764 4888777654322211 1122334455
Q ss_pred EEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEec-CCCCceEEEEEECCEEEEEe-CC--CCeEEEEeC
Q psy13635 269 ITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELIN-ENLPHVFGISLLGDYVYWTD-WQ--RRSIDRVNK 334 (357)
Q Consensus 269 iaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~-~~~~~p~gia~~~~~ly~td-~~--~~~I~~~~~ 334 (357)
+.+. ..|.=|++-+....|..+..+....+.+.. ..+++.+++.+.-+.=|+-. +. +=++++.+.
T Consensus 278 Vdfs-ptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 278 VDFS-PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred eccC-CCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence 6665 466778888888899999887655555554 46788999988754444432 32 233455543
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=4.5 Score=42.49 Aligned_cols=178 Identities=9% Similarity=-0.010 Sum_probs=101.9
Q ss_pred CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCC
Q psy13635 49 SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 128 (357)
Q Consensus 49 ~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~ 128 (357)
...|+..|+.................++++++.++.++++-..++.|...++.... ....+.. -..+..+++.+..
T Consensus 554 Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~---~~~~~~~-~~~v~~v~~~~~~ 629 (793)
T PLN00181 554 EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV---SIGTIKT-KANICCVQFPSES 629 (793)
T ss_pred CCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc---EEEEEec-CCCeEEEEEeCCC
Confidence 45677888876433333444556688999998778888888888889988887653 1222222 2345667775556
Q ss_pred CeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCC-
Q psy13635 129 EKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEG- 207 (357)
Q Consensus 129 ~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g- 207 (357)
+..+.+-..++.|...++...........+. -.....+.+. .+..+++-...+.|...++..
T Consensus 630 g~~latgs~dg~I~iwD~~~~~~~~~~~~~h---------------~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 630 GRSLAFGSADHKVYYYDLRNPKLPLCTMIGH---------------SKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred CCEEEEEeCCCeEEEEECCCCCccceEecCC---------------CCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCC
Confidence 7777787788899999886432111110110 0122344443 344555655666777776642
Q ss_pred ------CceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecC
Q psy13635 208 ------THRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLN 251 (357)
Q Consensus 208 ------~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~d 251 (357)
.....+ .........+++++.++.|...... +.|...+..
T Consensus 693 ~~~~~~~~l~~~-~gh~~~i~~v~~s~~~~~lasgs~D---~~v~iw~~~ 738 (793)
T PLN00181 693 ISGINETPLHSF-MGHTNVKNFVGLSVSDGYIATGSET---NEVFVYHKA 738 (793)
T ss_pred ccccCCcceEEE-cCCCCCeeEEEEcCCCCEEEEEeCC---CEEEEEECC
Confidence 112222 1223345678888765544444333 456555543
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.27 E-value=2.4 Score=39.12 Aligned_cols=184 Identities=16% Similarity=0.125 Sum_probs=97.0
Q ss_pred eecCCCCeEEEEEe----------CCc-EEEEEcCCC-CcceEeccC------CCcEEEEEEEccCCEEEEEeCC-CCeE
Q psy13635 35 LSHHVAAQMLLFAT----------SKD-IRIANLSRP-LKPVTIIKD------LEEGAAIDYYYKKSMVCWTDHG-TEMI 95 (357)
Q Consensus 35 ~~~~~~~~~l~~~~----------~~~-i~~~~~~~~-~~~~~~~~~------~~~~~~i~~d~~~~~ly~~d~~-~~~I 95 (357)
+..++....+|.++ +.+ |..+|..+= ...++.++. +..+..+.+..++..+|+-+.. ...|
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SV 120 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSV 120 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEE
T ss_pred eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeE
Confidence 34455666677655 222 556777551 122223332 2234456677788999999875 4678
Q ss_pred EEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcC--CCceEEEEecCCCCcceeeeeccCcc
Q psy13635 96 SCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD--GKKRKVLYWEDIDQPRAIASYKLPTI 173 (357)
Q Consensus 96 ~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~--g~~~~~~~~~~~~~p~~i~~~~~~~~ 173 (357)
..+++...... .++-..++ .+.+-+..+. |.+=.+.|++..+.+| |+..+. ...-+. +.. .-
T Consensus 121 tVVDl~~~kvv--~ei~~PGC----~~iyP~~~~~-F~~lC~DGsl~~v~Ld~~Gk~~~~-~t~~F~-~~~-------dp 184 (342)
T PF06433_consen 121 TVVDLAAKKVV--GEIDTPGC----WLIYPSGNRG-FSMLCGDGSLLTVTLDADGKEAQK-STKVFD-PDD-------DP 184 (342)
T ss_dssp EEEETTTTEEE--EEEEGTSE----EEEEEEETTE-EEEEETTSCEEEEEETSTSSEEEE-EEEESS-TTT-------S-
T ss_pred EEEECCCCcee--eeecCCCE----EEEEecCCCc-eEEEecCCceEEEEECCCCCEeEe-eccccC-CCC-------cc
Confidence 99999887421 23333333 1223222333 5566677888888776 443311 111110 000 00
Q ss_pred cccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecC---------CCCCce---EEEEeCCCCEEEEEeC
Q psy13635 174 EVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNT---------DLVEPR---AITLSPAHGYLFWSDW 238 (357)
Q Consensus 174 ~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~---------~~~~P~---giavd~~~g~Ly~~d~ 238 (357)
-|..| +.+..++.+||... .+.|+.+++.|...+....- .--.|. -+|+++..++||+...
T Consensus 185 ~f~~~---~~~~~~~~~~F~Sy-~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh 257 (342)
T PF06433_consen 185 LFEHP---AYSRDGGRLYFVSY-EGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMH 257 (342)
T ss_dssp B-S-----EEETTTTEEEEEBT-TSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEE
T ss_pred ccccc---ceECCCCeEEEEec-CCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEec
Confidence 11222 23335678888655 47899999998765443221 112343 3889998999998753
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=4.3 Score=40.94 Aligned_cols=220 Identities=8% Similarity=-0.034 Sum_probs=108.8
Q ss_pred EEEEEeCCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeC-------CCCeEEEEEcCCCCcceeEEEEeCC
Q psy13635 43 MLLFATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDH-------GTEMISCCTFDGNNVGSKHNVITNG 115 (357)
Q Consensus 43 ~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~-------~~~~I~~~~~~g~~~~~~~~~~~~~ 115 (357)
.++......+.+++-.+.....-.......+...++.++++++.+... ....|+..+..|.. ..+. .+
T Consensus 322 ~~~~v~~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~----~~lt-~g 396 (591)
T PRK13616 322 GLHALVDGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA----VQVL-EG 396 (591)
T ss_pred cceEEECCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc----eeee-cC
Confidence 344444666777653221000001112345667788888888766542 23478877765542 2222 22
Q ss_pred cCCceeEEEEcCCCeEEEEeCCCCEEEEEE-cCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEe
Q psy13635 116 LITPDGLAIDWLTEKLYWTDSETNKLEVSS-LDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTD 194 (357)
Q Consensus 116 ~~~p~glavd~~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td 194 (357)
- .-....+++.++.|++....+ ++.++. -++.....+..-....++. . .-..+..+++.+.+.+|.+.-
T Consensus 397 ~-~~t~PsWspDG~~lw~v~dg~-~~~~v~~~~~~gql~~~~vd~ge~~~-~-------~~g~Issl~wSpDG~RiA~i~ 466 (591)
T PRK13616 397 H-SLTRPSWSLDADAVWVVVDGN-TVVRVIRDPATGQLARTPVDASAVAS-R-------VPGPISELQLSRDGVRAAMII 466 (591)
T ss_pred C-CCCCceECCCCCceEEEecCc-ceEEEeccCCCceEEEEeccCchhhh-c-------cCCCcCeEEECCCCCEEEEEE
Confidence 1 133445776667676664221 222222 1121111111111111110 0 002466777777777777655
Q ss_pred CCCCeEEE---EEcCCCceEE-----EecCCCCC-ceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCC
Q psy13635 195 TGTDRIEV---CRLEGTHRKV-----LVNTDLVE-PRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGW 265 (357)
Q Consensus 195 ~~~~~I~~---~~~~g~~~~~-----~~~~~~~~-P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~ 265 (357)
. ++|++ ...++...+. +. ..+.. +..++--. ++.|++...+.. ..++++.+||.....+....+..
T Consensus 467 ~--g~v~Va~Vvr~~~G~~~l~~~~~l~-~~l~~~~~~l~W~~-~~~L~V~~~~~~-~~v~~v~vDG~~~~~~~~~n~~~ 541 (591)
T PRK13616 467 G--GKVYLAVVEQTEDGQYALTNPREVG-PGLGDTAVSLDWRT-GDSLVVGRSDPE-HPVWYVNLDGSNSDALPSRNLSA 541 (591)
T ss_pred C--CEEEEEEEEeCCCCceeecccEEee-cccCCccccceEec-CCEEEEEecCCC-CceEEEecCCccccccCCCCccC
Confidence 3 45655 3333332222 22 23333 46666554 467887765543 67999999998776533333333
Q ss_pred c-eEEEEecCCCEEEEEeCC
Q psy13635 266 P-NGITLDVDNEKLYWCDAK 284 (357)
Q Consensus 266 P-~giaid~~~~~lY~~d~~ 284 (357)
| ..|+- ..+.||++|..
T Consensus 542 ~v~~vaa--~~~~iyv~~~~ 559 (591)
T PRK13616 542 PVVAVAA--SPSTVYVTDAR 559 (591)
T ss_pred ceEEEec--CCceEEEEcCC
Confidence 3 34444 45689999854
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=94.91 E-value=3.6 Score=39.18 Aligned_cols=157 Identities=16% Similarity=0.175 Sum_probs=99.1
Q ss_pred CCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEe-CCCCEEEEEEcC
Q psy13635 69 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTD-SETNKLEVSSLD 147 (357)
Q Consensus 69 ~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td-~~~~~I~~~~~~ 147 (357)
.-....++++.. +|.+..+...++.++-.+.+|.- ...+... ..|. +++-|...-=|+.. ...+++...+.-
T Consensus 234 ~nkdVT~L~Wn~-~G~~LatG~~~G~~riw~~~G~l----~~tl~~H-kgPI-~slKWnk~G~yilS~~vD~ttilwd~~ 306 (524)
T KOG0273|consen 234 SNKDVTSLDWNN-DGTLLATGSEDGEARIWNKDGNL----ISTLGQH-KGPI-FSLKWNKKGTYILSGGVDGTTILWDAH 306 (524)
T ss_pred ccCCcceEEecC-CCCeEEEeecCcEEEEEecCchh----hhhhhcc-CCce-EEEEEcCCCCEEEeccCCccEEEEecc
Confidence 345678899875 67777888888888888988874 2222221 2222 35555554444433 345666666653
Q ss_pred CCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEe
Q psy13635 148 GKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLS 227 (357)
Q Consensus 148 g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd 227 (357)
.......+ .+....++-|||.++.=|.+....+.|+++..++.....-..+.-...++|-.+
T Consensus 307 ~g~~~q~f------------------~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n 368 (524)
T KOG0273|consen 307 TGTVKQQF------------------EFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN 368 (524)
T ss_pred CceEEEee------------------eeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEEC
Confidence 33333222 122334688999999999998888899999998876554444455678899999
Q ss_pred CCCCEEEEEeCCCCCCeEEEEecC
Q psy13635 228 PAHGYLFWSDWNEKRPKIERSLLN 251 (357)
Q Consensus 228 ~~~g~Ly~~d~~~~~~~I~~~~~d 251 (357)
|. |.|.-+......-+|+...-+
T Consensus 369 ~t-g~LLaS~SdD~TlkiWs~~~~ 391 (524)
T KOG0273|consen 369 PT-GSLLASCSDDGTLKIWSMGQS 391 (524)
T ss_pred CC-CceEEEecCCCeeEeeecCCC
Confidence 86 666666554332466655443
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=94.85 E-value=3.9 Score=39.29 Aligned_cols=225 Identities=11% Similarity=0.071 Sum_probs=119.2
Q ss_pred EEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCE-EEEEEcCCCceEEEEecCCCCcc
Q psy13635 85 VCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNK-LEVSSLDGKKRKVLYWEDIDQPR 163 (357)
Q Consensus 85 ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~-I~~~~~~g~~~~~~~~~~~~~p~ 163 (357)
|.++.....++.++.-.-+..++...+-..+..+-..++.. ...+|.+..+.+. |...++..+.......
T Consensus 48 lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~--s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lk------- 118 (673)
T KOG4378|consen 48 LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACA--SQSLYEISGGQSGCVKIWDLRAKLIHRFLK------- 118 (673)
T ss_pred EEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhh--hcceeeeccCcCceeeehhhHHHHHhhhcc-------
Confidence 66666666676666544322222222222222244444443 6668888876544 4444555332222110
Q ss_pred eeeeeccCcccccCCceEEEeCCCCeEEEEeC-CCCeEEEEEcCCCceE-EEecCCCCCceEEEEeCCCCEEEEEeCCCC
Q psy13635 164 AIASYKLPTIEVEHPDGVAVDWVARNLYWTDT-GTDRIEVCRLEGTHRK-VLVNTDLVEPRAITLSPAHGYLFWSDWNEK 241 (357)
Q Consensus 164 ~i~~~~~~~~~~~~p~glavD~~~~~lY~td~-~~~~I~~~~~~g~~~~-~~~~~~~~~P~giavd~~~g~Ly~~d~~~~ 241 (357)
.-.....++...+.. -|++.. ..+.|...+....... .+........+-+..++....|..+-..
T Consensus 119 ---------dh~stvt~v~YN~~D--eyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd-- 185 (673)
T KOG4378|consen 119 ---------DHQSTVTYVDYNNTD--EYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASD-- 185 (673)
T ss_pred ---------CCcceeEEEEecCCc--ceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeecc--
Confidence 001233344443322 233322 2234444443322221 2211112223455666666666666555
Q ss_pred CCeEEEEecCCCceEEEeeCCCCCc-eEEEEecCCCEEEEEeCCCCeEEEEeCCCCCe-EEEecCCCCceE-EEEEE-CC
Q psy13635 242 RPKIERSLLNGGERVLLVKDRLGWP-NGITLDVDNEKLYWCDAKTDKIEMIDFDGNNR-RELINENLPHVF-GISLL-GD 317 (357)
Q Consensus 242 ~~~I~~~~~dg~~~~~~~~~~l~~P-~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~-~~i~~~~~~~p~-gia~~-~~ 317 (357)
++.+...+..|.....-+.+.-..| .||.+.+.+..|+++-....+|..+|...... ..+. -.+|. .+++. .|
T Consensus 186 ~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~---y~~Plstvaf~~~G 262 (673)
T KOG4378|consen 186 KGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT---YSHPLSTVAFSECG 262 (673)
T ss_pred CCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee---ecCCcceeeecCCc
Confidence 3577777777765544333333345 79999999999999998889999998764322 2222 34665 46665 47
Q ss_pred EEEEEeCCCCeEEEEeC
Q psy13635 318 YVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 318 ~ly~td~~~~~I~~~~~ 334 (357)
....+-..+|+|+..|.
T Consensus 263 ~~L~aG~s~G~~i~YD~ 279 (673)
T KOG4378|consen 263 TYLCAGNSKGELIAYDM 279 (673)
T ss_pred eEEEeecCCceEEEEec
Confidence 77777777788888875
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=94.84 E-value=2.9 Score=37.69 Aligned_cols=231 Identities=13% Similarity=0.107 Sum_probs=141.1
Q ss_pred CeEEEEEe-CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCE-EEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCC
Q psy13635 41 AQMLLFAT-SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSM-VCWTDHGTEMISCCTFDGNNVGSKHNVITNGLIT 118 (357)
Q Consensus 41 ~~~l~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 118 (357)
...|+.++ ++.++.+|...+.....+...--.+.-+-|-+.... |+=+...+..|+-.++.... ........-..
T Consensus 26 G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNk---ylRYF~GH~~~ 102 (311)
T KOG1446|consen 26 GLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNK---YLRYFPGHKKR 102 (311)
T ss_pred CCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCc---eEEEcCCCCce
Confidence 34455544 446888888765544444433223333344444444 44444456788888887763 34444444566
Q ss_pred ceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCC
Q psy13635 119 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTD 198 (357)
Q Consensus 119 p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~ 198 (357)
..+|++.|.+ ..|.+.+..++|+-.++.-...+.+.... .+.-.|+|| .|.+|.+-.+.+
T Consensus 103 V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~~------------------~~pi~AfDp-~GLifA~~~~~~ 162 (311)
T KOG1446|consen 103 VNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNLS------------------GRPIAAFDP-EGLIFALANGSE 162 (311)
T ss_pred EEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEecC------------------CCcceeECC-CCcEEEEecCCC
Confidence 8899999865 78999998999999999866665554322 455568885 556776766666
Q ss_pred eEEEEEcC----CCceEEEec-CCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEe-cCCCceEEEee--CCCCCceEEE
Q psy13635 199 RIEVCRLE----GTHRKVLVN-TDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSL-LNGGERVLLVK--DRLGWPNGIT 270 (357)
Q Consensus 199 ~I~~~~~~----g~~~~~~~~-~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~-~dg~~~~~~~~--~~l~~P~gia 270 (357)
.|...|+. |-.....+. .....=.+|.+++.+..|.++... +.++.++ .+|.....+-. .....|-+-+
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~---s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ 239 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA---SFIYLLDAFDGTVKSTFSGYPNAGNLPLSAT 239 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC---CcEEEEEccCCcEeeeEeeccCCCCcceeEE
Confidence 88877764 222222222 234456789999987778887766 4566665 45653333321 2334465666
Q ss_pred EecCCCEEEEEeCCCCeEEEEeCCCCCe
Q psy13635 271 LDVDNEKLYWCDAKTDKIEMIDFDGNNR 298 (357)
Q Consensus 271 id~~~~~lY~~d~~~~~I~~~~~dG~~~ 298 (357)
+.|++..+ .+-+..++|...+.+....
T Consensus 240 ftPds~Fv-l~gs~dg~i~vw~~~tg~~ 266 (311)
T KOG1446|consen 240 FTPDSKFV-LSGSDDGTIHVWNLETGKK 266 (311)
T ss_pred ECCCCcEE-EEecCCCcEEEEEcCCCcE
Confidence 66554444 4555678888888754443
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=94.77 E-value=1.3 Score=40.65 Aligned_cols=231 Identities=12% Similarity=0.085 Sum_probs=132.4
Q ss_pred EEEEeecCCCCeEEEEEeCCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEE
Q psy13635 31 FWYALSHHVAAQMLLFATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHN 110 (357)
Q Consensus 31 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~ 110 (357)
+..++.... ..++.++++.++++...++. ....+..-....||+-.. .+.+|-+-.. .|...+..-.. ...
T Consensus 111 ~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~--p~~tilg~s~~~gIdh~~-~~~~FaTcGe--~i~IWD~~R~~---Pv~ 181 (433)
T KOG0268|consen 111 LVRGICVTQ-TSFFTVGDDKTVKQWKIDGP--PLHTILGKSVYLGIDHHR-KNSVFATCGE--QIDIWDEQRDN---PVS 181 (433)
T ss_pred ceeeEEecc-cceEEecCCcceeeeeccCC--cceeeecccccccccccc-ccccccccCc--eeeecccccCC---ccc
Confidence 445555554 67788888888877665552 111222222344444433 3334433222 23322332221 133
Q ss_pred EEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCce-EEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCe
Q psy13635 111 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKR-KVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARN 189 (357)
Q Consensus 111 ~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~-~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~ 189 (357)
...-+..+...+.+.+..-.|.-+....+.|..+++..... +-++ .+ ..+++|+..| ...
T Consensus 182 smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~-----------------mRTN~IswnP-eaf 242 (433)
T KOG0268|consen 182 SMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LT-----------------MRTNTICWNP-EAF 242 (433)
T ss_pred eeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee-ee-----------------ccccceecCc-ccc
Confidence 34445556677888888888888777788888888754432 2221 11 2688888888 778
Q ss_pred EEEEeCCCCeEEEEEcCCCceE-EEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEE-eeCCCCCce
Q psy13635 190 LYWTDTGTDRIEVCRLEGTHRK-VLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLL-VKDRLGWPN 267 (357)
Q Consensus 190 lY~td~~~~~I~~~~~~g~~~~-~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~-~~~~l~~P~ 267 (357)
.|++......++.+|+.--... .+..+......++.++|. |.=|++-.... .|.-...+.+..+.+ .....+...
T Consensus 243 nF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfspt-G~EfvsgsyDk--sIRIf~~~~~~SRdiYhtkRMq~V~ 319 (433)
T KOG0268|consen 243 NFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPT-GQEFVSGSYDK--SIRIFPVNHGHSRDIYHTKRMQHVF 319 (433)
T ss_pred ceeeccccccceehhhhhhcccchhhcccceeEEEeccCCC-cchhccccccc--eEEEeecCCCcchhhhhHhhhheee
Confidence 8888877778888876643322 122233455677888874 88888877754 676666665444333 334467777
Q ss_pred EEEEecCCCEEEE-EeCCCCeEEEEe
Q psy13635 268 GITLDVDNEKLYW-CDAKTDKIEMID 292 (357)
Q Consensus 268 giaid~~~~~lY~-~d~~~~~I~~~~ 292 (357)
++....++..++- +|.++=++|++.
T Consensus 320 ~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 320 CVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred EEEEeccccEEEecCCCcceeeeecc
Confidence 8887655554432 233344555554
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.19 Score=30.78 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=30.1
Q ss_pred CCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEe
Q psy13635 186 VARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLS 227 (357)
Q Consensus 186 ~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd 227 (357)
.+++||+++...+.|..++........-+.. ...|.+++++
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~~ 42 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAVS 42 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEeC
Confidence 4678999999999999999865443333332 4789999875
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=94.41 E-value=5.2 Score=38.73 Aligned_cols=200 Identities=12% Similarity=0.095 Sum_probs=111.4
Q ss_pred EEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCe
Q psy13635 110 NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARN 189 (357)
Q Consensus 110 ~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~ 189 (357)
.++....++...+++.+.+..||-++ ..+.|...+........+...+ .-+...+++.+ ..+.
T Consensus 314 ~~i~GHnK~ITaLtv~~d~~~i~Sgs-yDG~I~~W~~~~g~~~~~~g~~---------------h~nqI~~~~~~-~~~~ 376 (603)
T KOG0318|consen 314 KVISGHNKSITALTVSPDGKTIYSGS-YDGHINSWDSGSGTSDRLAGKG---------------HTNQIKGMAAS-ESGE 376 (603)
T ss_pred heecccccceeEEEEcCCCCEEEeec-cCceEEEEecCCcccccccccc---------------ccceEEEEeec-CCCc
Confidence 34444556788999998776666444 5678888776554443332111 22356677776 4466
Q ss_pred EEEEeCCCCeEEEEEcCCCce--EEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCce
Q psy13635 190 LYWTDTGTDRIEVCRLEGTHR--KVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPN 267 (357)
Q Consensus 190 lY~td~~~~~I~~~~~~g~~~--~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~ 267 (357)
||-+.+ .+.+.+.++.+... ...+. --.+|.++++.+.++.+.++... .|....- .+....+ .-...|.
T Consensus 377 ~~t~g~-Dd~l~~~~~~~~~~t~~~~~~-lg~QP~~lav~~d~~~avv~~~~----~iv~l~~-~~~~~~~--~~~y~~s 447 (603)
T KOG0318|consen 377 LFTIGW-DDTLRVISLKDNGYTKSEVVK-LGSQPKGLAVLSDGGTAVVACIS----DIVLLQD-QTKVSSI--PIGYESS 447 (603)
T ss_pred EEEEec-CCeEEEEecccCcccccceee-cCCCceeEEEcCCCCEEEEEecC----cEEEEec-CCcceee--ccccccc
Confidence 765544 46788887654322 11121 23689999999876677777655 3332221 1111111 1235788
Q ss_pred EEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEE--ecCCCCceEEEEEEC--CEEEEEeCCCCeEEEEeCccC
Q psy13635 268 GITLDVDNEKLYWCDAKTDKIEMIDFDGNNRREL--INENLPHVFGISLLG--DYVYWTDWQRRSIDRVNKITG 337 (357)
Q Consensus 268 giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i--~~~~~~~p~gia~~~--~~ly~td~~~~~I~~~~~~~g 337 (357)
++|+.+....+- .-...++++.+.+.|....+. ..+....+..+++.. .+|-.+| .++++...+..+.
T Consensus 448 ~vAv~~~~~~va-VGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~D-a~rkvv~yd~~s~ 519 (603)
T KOG0318|consen 448 AVAVSPDGSEVA-VGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGD-ASRKVVLYDVASR 519 (603)
T ss_pred eEEEcCCCCEEE-EecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEec-cCCcEEEEEcccC
Confidence 999986544443 334556799999888653322 222334455666653 3333344 3355555554333
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=94.11 E-value=5.6 Score=37.98 Aligned_cols=257 Identities=9% Similarity=0.047 Sum_probs=141.6
Q ss_pred EEEeCCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCc-eeEE
Q psy13635 45 LFATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITP-DGLA 123 (357)
Q Consensus 45 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p-~gla 123 (357)
..+++-.+..++..+-........--....+++|-. +|+|.-+...+|.+..+++..... ...+. .-..| .-+-
T Consensus 43 aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~-DG~LlaaGD~sG~V~vfD~k~r~i---LR~~~-ah~apv~~~~ 117 (487)
T KOG0310|consen 43 AVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRS-DGRLLAAGDESGHVKVFDMKSRVI---LRQLY-AHQAPVHVTK 117 (487)
T ss_pred EEecccEEEEEecchhhhhhhHHhhccceeEEEeec-CCeEEEccCCcCcEEEeccccHHH---HHHHh-hccCceeEEE
Confidence 344444555565543111111111222466778864 788988888889999888554211 00111 11223 3344
Q ss_pred EEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEE
Q psy13635 124 IDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVC 203 (357)
Q Consensus 124 vd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~ 203 (357)
+.+..+.++.+.++.+.+...++++... .+...+ --......++-+.++.|.++....+.|...
T Consensus 118 f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~---------------htDYVR~g~~~~~~~hivvtGsYDg~vrl~ 181 (487)
T KOG0310|consen 118 FSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSG---------------HTDYVRCGDISPANDHIVVTGSYDGKVRLW 181 (487)
T ss_pred ecccCCeEEEecCCCceEEEEEcCCcEE-EEEecC---------------CcceeEeeccccCCCeEEEecCCCceEEEE
Confidence 6667788888888788888888888775 222121 112566778888999999999999999888
Q ss_pred EcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEE-EeeCCCCCceEEEEecCCCEEEEEe
Q psy13635 204 RLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVL-LVKDRLGWPNGITLDVDNEKLYWCD 282 (357)
Q Consensus 204 ~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~-~~~~~l~~P~giaid~~~~~lY~~d 282 (357)
+.......+. .-+-..|-.-.+--..|.+..+-.+ +.+...++-++.+.. .........++|.+...+.+|+- -
T Consensus 182 DtR~~~~~v~-elnhg~pVe~vl~lpsgs~iasAgG---n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS-~ 256 (487)
T KOG0310|consen 182 DTRSLTSRVV-ELNHGCPVESVLALPSGSLIASAGG---NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLS-G 256 (487)
T ss_pred EeccCCceeE-EecCCCceeeEEEcCCCCEEEEcCC---CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEee-c
Confidence 8765532222 1123445444444345777777766 367777776433322 22223445678887644455543 3
Q ss_pred CCCCeEEEEeCCCCCeEEEecCCCCce-EEEEEE-CCEEEEEeCCCCeE
Q psy13635 283 AKTDKIEMIDFDGNNRRELINENLPHV-FGISLL-GDYVYWTDWQRRSI 329 (357)
Q Consensus 283 ~~~~~I~~~~~dG~~~~~i~~~~~~~p-~gia~~-~~~ly~td~~~~~I 329 (357)
.-.+.+..++. ++-+.+..-..+.| ..|++. ++.-.+.-..+|.+
T Consensus 257 sLD~~VKVfd~--t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv 303 (487)
T KOG0310|consen 257 SLDRHVKVFDT--TNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLV 303 (487)
T ss_pred ccccceEEEEc--cceEEEEeeecccceeeEEecCCCceEEEeccccee
Confidence 34456666663 22222322234444 456665 33333333444444
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=94.01 E-value=5.7 Score=37.74 Aligned_cols=252 Identities=11% Similarity=0.078 Sum_probs=130.6
Q ss_pred CCcEEEEEEEccCC-EEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCc-CCceeEEEEcCCCeEEEEeCCCCEEEEEEcC
Q psy13635 70 LEEGAAIDYYYKKS-MVCWTDHGTEMISCCTFDGNNVGSKHNVITNGL-ITPDGLAIDWLTEKLYWTDSETNKLEVSSLD 147 (357)
Q Consensus 70 ~~~~~~i~~d~~~~-~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~-~~p~glavd~~~~~ly~td~~~~~I~~~~~~ 147 (357)
-+....++|+|.++ ++.-+....|.|.-.++++.+.......+...- ....+|-+.|.+-.-.++.+..|.|...++.
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~ 265 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFE 265 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeec
Confidence 44678999999888 777776677888888886443111122222222 2345566666554444445556677777766
Q ss_pred CCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEE--cCCCceEEEecCCCCCceEEE
Q psy13635 148 GKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCR--LEGTHRKVLVNTDLVEPRAIT 225 (357)
Q Consensus 148 g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~--~~g~~~~~~~~~~~~~P~gia 225 (357)
+...+.+.+..-+ + .+-.++-+-...+.+|+.+.-. ....++ .+|+....+... -...++++
T Consensus 266 ~~i~e~v~s~~~d--~------------~~fs~~d~~~e~~~vl~~~~~G-~f~~iD~R~~~s~~~~~~lh-~kKI~sv~ 329 (498)
T KOG4328|consen 266 GNISEEVLSLDTD--N------------IWFSSLDFSAESRSVLFGDNVG-NFNVIDLRTDGSEYENLRLH-KKKITSVA 329 (498)
T ss_pred chhhHHHhhcCcc--c------------eeeeeccccCCCccEEEeeccc-ceEEEEeecCCccchhhhhh-hcccceee
Confidence 6655444433100 0 0122333333455666655443 333333 344433322221 23788999
Q ss_pred EeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeC--CCCCceEEEEecCCCEEEEEeCCCCeEEEEeCC---C--CCe
Q psy13635 226 LSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKD--RLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFD---G--NNR 298 (357)
Q Consensus 226 vd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~--~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~d---G--~~~ 298 (357)
++|.....+.|..-....+||-..-=+.....++.. .-...++..+.|.++.|.-+ ...+.|..++-. . ...
T Consensus 330 ~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT-~~D~~IRv~dss~~sa~~~p~ 408 (498)
T KOG4328|consen 330 LNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTT-CQDNEIRVFDSSCISAKDEPL 408 (498)
T ss_pred cCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEee-ccCCceEEeecccccccCCcc
Confidence 999876666665443334677665433333222211 11223566777888885444 445677777642 1 123
Q ss_pred EEEecCCC--C--ceEEEEEE-CCEEEEEeCCCCeEEEEeCccCc
Q psy13635 299 RELINENL--P--HVFGISLL-GDYVYWTDWQRRSIDRVNKITGN 338 (357)
Q Consensus 299 ~~i~~~~~--~--~p~gia~~-~~~ly~td~~~~~I~~~~~~~g~ 338 (357)
..|.++.. . .|+--+++ ...+++.-...+.|-.++...|+
T Consensus 409 ~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 409 GTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred ceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence 33444321 1 23433444 23333343455677778774444
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=93.97 E-value=5 Score=36.88 Aligned_cols=256 Identities=14% Similarity=0.082 Sum_probs=147.1
Q ss_pred CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCC
Q psy13635 49 SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 128 (357)
Q Consensus 49 ~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~ 128 (357)
.+.|.+-|...-.-...+...-+...-++|+ +++.++...+..|...+.+.++ ...++.....+.-++.+.
T Consensus 216 DnTikiWD~n~~~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tge---~l~tlihHceaVLhlrf~--- 286 (499)
T KOG0281|consen 216 DNTIKIWDKNSLECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGE---PLNTLIHHCEAVLHLRFS--- 286 (499)
T ss_pred cCceEEeccccHHHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEeccCCc---hhhHHhhhcceeEEEEEe---
Confidence 4567777654422223334455667777776 6688898888888888888764 244444555666777775
Q ss_pred CeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCC-
Q psy13635 129 EKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEG- 207 (357)
Q Consensus 129 ~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g- 207 (357)
+...++.+-...|.+.+++... .++++....+-....+-+-+| .++.++.++..+|.+-+.+.
T Consensus 287 ng~mvtcSkDrsiaVWdm~sps-------------~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~~st~ 350 (499)
T KOG0281|consen 287 NGYMVTCSKDRSIAVWDMASPT-------------DITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTSTC 350 (499)
T ss_pred CCEEEEecCCceeEEEeccCch-------------HHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEeccce
Confidence 3455677777778777765432 111100001111223333333 35666777777888777664
Q ss_pred CceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCe
Q psy13635 208 THRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDK 287 (357)
Q Consensus 208 ~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~ 287 (357)
...+++. .+-+|||--..+|++.++-...+ .|.-.+...+.-..++...-.....|.+| + +-.++-...++
T Consensus 351 efvRtl~----gHkRGIAClQYr~rlvVSGSSDn--tIRlwdi~~G~cLRvLeGHEeLvRciRFd--~-krIVSGaYDGk 421 (499)
T KOG0281|consen 351 EFVRTLN----GHKRGIACLQYRDRLVVSGSSDN--TIRLWDIECGACLRVLEGHEELVRCIRFD--N-KRIVSGAYDGK 421 (499)
T ss_pred eeehhhh----cccccceehhccCeEEEecCCCc--eEEEEeccccHHHHHHhchHHhhhheeec--C-ceeeeccccce
Confidence 3333332 46789999888999999988854 77767665443322222211223456664 3 34467778888
Q ss_pred EEEEeCCC-CCeEEEe--------cCCCCceEEEEEECCEEEEEeCCCCeEEEEeCccCce
Q psy13635 288 IEMIDFDG-NNRRELI--------NENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGND 339 (357)
Q Consensus 288 I~~~~~dG-~~~~~i~--------~~~~~~p~gia~~~~~ly~td~~~~~I~~~~~~~g~~ 339 (357)
|..-++.. ...+... .++.+..+++.+|+-.+ ++.+...+|..-+-.+|-.
T Consensus 422 ikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqI-vsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 422 IKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQI-ISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred EEEEecccccCCcccccchHHHhhhhccceeEEEeecceEE-EeccCCCeEEEEEcCCCCc
Confidence 88888743 2222111 12344667887776444 4444555665544434433
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=93.58 E-value=6.6 Score=36.97 Aligned_cols=252 Identities=10% Similarity=0.010 Sum_probs=142.5
Q ss_pred cEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcC-CCeEEEEeCCCCEEEEEEcCCCc
Q psy13635 72 EGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL-TEKLYWTDSETNKLEVSSLDGKK 150 (357)
Q Consensus 72 ~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~-~~~ly~td~~~~~I~~~~~~g~~ 150 (357)
.|.+...-..++.+..+..-+|.....+...-. ...++........++.+.|. ++.-..+.+..+.+.-.++++..
T Consensus 176 rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~---~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 176 RPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN---LLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred CcceeeEeecCCCeEEEeecCCceeEeecCCcc---eeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 344444444567777777766666655554432 13344445567888999987 35555666667777777766642
Q ss_pred e-EEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEec-CCCCCceEEEEeC
Q psy13635 151 R-KVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVN-TDLVEPRAITLSP 228 (357)
Q Consensus 151 ~-~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~-~~~~~P~giavd~ 228 (357)
. ..+. +-......+++.|.++.|- |-....+=..-|+..+. +.+.. +.-....+|++.+
T Consensus 253 ~l~~l~-----------------gH~~RVs~VafHPsG~~L~-TasfD~tWRlWD~~tk~-ElL~QEGHs~~v~~iaf~~ 313 (459)
T KOG0272|consen 253 PLQDLE-----------------GHLARVSRVAFHPSGKFLG-TASFDSTWRLWDLETKS-ELLLQEGHSKGVFSIAFQP 313 (459)
T ss_pred chhhhh-----------------cchhhheeeeecCCCceee-ecccccchhhcccccch-hhHhhcccccccceeEecC
Confidence 2 1111 1112455677777665554 33322211112222221 12222 2345678899997
Q ss_pred CCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCc
Q psy13635 229 AHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPH 308 (357)
Q Consensus 229 ~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~ 308 (357)
+ |.|--+-.-...++|+-... ....-++...+....+++++ .+|+..-+-...+.+..-|+.+.....++.....-
T Consensus 314 D-GSL~~tGGlD~~~RvWDlRt--gr~im~L~gH~k~I~~V~fs-PNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl 389 (459)
T KOG0272|consen 314 D-GSLAATGGLDSLGRVWDLRT--GRCIMFLAGHIKEILSVAFS-PNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNL 389 (459)
T ss_pred C-CceeeccCccchhheeeccc--CcEEEEecccccceeeEeEC-CCceEEeecCCCCcEEEeeecccccceecccccch
Confidence 5 77766644333356654442 22233344566777899998 58888888887888888888776554444433333
Q ss_pred eEEEEEE--CCEEEEEeCCCCeEEEEeCccCceeEEEecccCC
Q psy13635 309 VFGISLL--GDYVYWTDWQRRSIDRVNKITGNDREVIIERSCT 349 (357)
Q Consensus 309 p~gia~~--~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~ 349 (357)
...+.+. +|...+|.+..+.+..-...+.+....++..-.+
T Consensus 390 VS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~k 432 (459)
T KOG0272|consen 390 VSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGK 432 (459)
T ss_pred hhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccc
Confidence 4455554 4777777777777665554455555555444333
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=93.42 E-value=12 Score=39.38 Aligned_cols=233 Identities=8% Similarity=-0.045 Sum_probs=125.8
Q ss_pred CCCCeEEEEEe-CCcEEEEEcCCC----C---cceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeE
Q psy13635 38 HVAAQMLLFAT-SKDIRIANLSRP----L---KPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKH 109 (357)
Q Consensus 38 ~~~~~~l~~~~-~~~i~~~~~~~~----~---~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~ 109 (357)
++...++..+. +..|+..++... . .............++++++..+....+...++.|...++.... ..
T Consensus 492 s~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~---~~ 568 (793)
T PLN00181 492 DRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ---LV 568 (793)
T ss_pred CCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe---EE
Confidence 33344444444 456777776431 0 1111222334566778876555555566667788888877552 12
Q ss_pred EEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCe
Q psy13635 110 NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARN 189 (357)
Q Consensus 110 ~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~ 189 (357)
..+...-....++++++..+.++++-...+.|...++........+... .....+.+.+..+.
T Consensus 569 ~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-----------------~~v~~v~~~~~~g~ 631 (793)
T PLN00181 569 TEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-----------------ANICCVQFPSESGR 631 (793)
T ss_pred EEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-----------------CCeEEEEEeCCCCC
Confidence 2333333456788888767788888888899999998654332221110 12344555444566
Q ss_pred EEEEeCCCCeEEEEEcCCCc-eEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCC------ceEEEeeCC
Q psy13635 190 LYWTDTGTDRIEVCRLEGTH-RKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGG------ERVLLVKDR 262 (357)
Q Consensus 190 lY~td~~~~~I~~~~~~g~~-~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~------~~~~~~~~~ 262 (357)
++++....+.|...+..... ..............+.+. ....|+-+... +.|...++... .....+...
T Consensus 632 ~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D---~~ikiWd~~~~~~~~~~~~l~~~~gh 707 (793)
T PLN00181 632 SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTD---NTLKLWDLSMSISGINETPLHSFMGH 707 (793)
T ss_pred EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECC---CEEEEEeCCCCccccCCcceEEEcCC
Confidence 77777777888888876432 111222222345566665 33444444333 35555554311 111112122
Q ss_pred CCCceEEEEecCCCEEEEEeCCCCeEEEEeCCC
Q psy13635 263 LGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDG 295 (357)
Q Consensus 263 l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG 295 (357)
......+++++.+ .+..+-...+.|...+...
T Consensus 708 ~~~i~~v~~s~~~-~~lasgs~D~~v~iw~~~~ 739 (793)
T PLN00181 708 TNVKNFVGLSVSD-GYIATGSETNEVFVYHKAF 739 (793)
T ss_pred CCCeeEEEEcCCC-CEEEEEeCCCEEEEEECCC
Confidence 2345678887554 4455555667777777643
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=93.33 E-value=4.2 Score=41.90 Aligned_cols=158 Identities=9% Similarity=0.064 Sum_probs=91.8
Q ss_pred CCceEEEeCCCCeEEEEeCCCC-eEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCce
Q psy13635 177 HPDGVAVDWVARNLYWTDTGTD-RIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGER 255 (357)
Q Consensus 177 ~p~glavD~~~~~lY~td~~~~-~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~ 255 (357)
+-..|.+|+.+..|+.++.... ++....-+-...+.+.. ......+++... + .|.+.... +.|.+...+....
T Consensus 15 G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~-~g~~v~~ia~~s--~-~f~~~s~~--~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 15 GLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI-SGELVSSIACYS--N-HFLTGSEQ--NTVLRYKFPSGEE 88 (933)
T ss_pred ceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc-cCceeEEEeecc--c-ceEEeecc--ceEEEeeCCCCCc
Confidence 3467888988888888777543 33333322233333321 123455666662 2 44444442 5899999887766
Q ss_pred EEEeeCCCCCc-eEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEE-CCEEEEEeCCCCeEEEEe
Q psy13635 256 VLLVKDRLGWP-NGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLL-GDYVYWTDWQRRSIDRVN 333 (357)
Q Consensus 256 ~~~~~~~l~~P-~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~-~~~ly~td~~~~~I~~~~ 333 (357)
..++.. +..| +.++++ -+|....+-...-.|..++.+-......+...-....+|.++ ++.+..+...+|.|+..+
T Consensus 89 ~~iL~R-ftlp~r~~~v~-g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 89 DTILAR-FTLPIRDLAVS-GSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred cceeee-eeccceEEEEe-cCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 655533 3344 678887 455554555555567777764443333333222334678887 466666667778888888
Q ss_pred CccCceeEE
Q psy13635 334 KITGNDREV 342 (357)
Q Consensus 334 ~~~g~~~~~ 342 (357)
..++.....
T Consensus 167 ~~~~~~~~t 175 (933)
T KOG1274|consen 167 LQDGILSKT 175 (933)
T ss_pred cccchhhhh
Confidence 766654443
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.38 Score=29.31 Aligned_cols=39 Identities=13% Similarity=0.044 Sum_probs=31.9
Q ss_pred ECCEEEEEeCCCCeEEEEeCccCceeEEEecccCCceeee
Q psy13635 315 LGDYVYWTDWQRRSIDRVNKITGNDREVIIERSCTGVTRR 354 (357)
Q Consensus 315 ~~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~i~ 354 (357)
++++||++++..++|..++..+++....+.- ...|.++.
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~ 40 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVA 40 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEE
Confidence 3578999999999999999878887777666 47787765
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=93.23 E-value=7.5 Score=36.60 Aligned_cols=252 Identities=11% Similarity=0.067 Sum_probs=141.9
Q ss_pred EeccCCCcEEEEEEEccCCEEEEEeCCC---CeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEE
Q psy13635 65 TIIKDLEEGAAIDYYYKKSMVCWTDHGT---EMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKL 141 (357)
Q Consensus 65 ~~~~~~~~~~~i~~d~~~~~ly~~d~~~---~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I 141 (357)
.+...-...+-+.|++++. |.+.... ..|+.+..++.. +-...+.........|...|.++.|.-+. ....+
T Consensus 219 il~~htdEVWfl~FS~nGk--yLAsaSkD~Taiiw~v~~d~~~--kl~~tlvgh~~~V~yi~wSPDdryLlaCg-~~e~~ 293 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGK--YLASASKDSTAIIWIVVYDVHF--KLKKTLVGHSQPVSYIMWSPDDRYLLACG-FDEVL 293 (519)
T ss_pred hHhhCCCcEEEEEEcCCCe--eEeeccCCceEEEEEEecCcce--eeeeeeecccCceEEEEECCCCCeEEecC-chHhe
Confidence 3344555677777776443 3333322 245666666552 11223333334456678888777665443 34456
Q ss_pred EEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCc
Q psy13635 142 EVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEP 221 (357)
Q Consensus 142 ~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P 221 (357)
...+.+.+......+.+.+ ..+...+--|.+ .=+++......|...++||.....--.......
T Consensus 294 ~lwDv~tgd~~~~y~~~~~---------------~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v 357 (519)
T KOG0293|consen 294 SLWDVDTGDLRHLYPSGLG---------------FSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKV 357 (519)
T ss_pred eeccCCcchhhhhcccCcC---------------CCcceeEEccCC-ceeEecCCCCcEEEecCCcchhhccccccccee
Confidence 6667766665555544321 134444444333 336777777889999999986443322233456
Q ss_pred eEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEE
Q psy13635 222 RAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRREL 301 (357)
Q Consensus 222 ~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i 301 (357)
..+|+.+++..++..... .+|.-.+......+-++.+. ..-..+.+. .++++...+-..+.|+.-|+.- ++ +
T Consensus 358 ~dlait~Dgk~vl~v~~d---~~i~l~~~e~~~dr~lise~-~~its~~iS-~d~k~~LvnL~~qei~LWDl~e-~~--l 429 (519)
T KOG0293|consen 358 HDLAITYDGKYVLLVTVD---KKIRLYNREARVDRGLISEE-QPITSFSIS-KDGKLALVNLQDQEIHLWDLEE-NK--L 429 (519)
T ss_pred EEEEEcCCCcEEEEEecc---cceeeechhhhhhhcccccc-CceeEEEEc-CCCcEEEEEcccCeeEEeecch-hh--H
Confidence 789999888888888765 46766666544333233221 233678886 7888888888888898888762 21 1
Q ss_pred ecCCCCc-----eEEEEEEC-C-EEEEEeCCCCeEEEEeCccCceeEEEec
Q psy13635 302 INENLPH-----VFGISLLG-D-YVYWTDWQRRSIDRVNKITGNDREVIIE 345 (357)
Q Consensus 302 ~~~~~~~-----p~gia~~~-~-~ly~td~~~~~I~~~~~~~g~~~~~i~~ 345 (357)
+..-.++ ...=++.+ + .+.-+-+..+.|+--++.+|+...++..
T Consensus 430 v~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG 480 (519)
T KOG0293|consen 430 VRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG 480 (519)
T ss_pred HHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC
Confidence 1111111 11112222 2 3333445556677666667776666543
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=93.22 E-value=8.7 Score=37.28 Aligned_cols=214 Identities=16% Similarity=0.081 Sum_probs=123.0
Q ss_pred cEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEE-eCCcCCceeEEEEcCCC
Q psy13635 51 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI-TNGLITPDGLAIDWLTE 129 (357)
Q Consensus 51 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~-~~~~~~p~glavd~~~~ 129 (357)
.|--++++.......+....+...++...+++..|| +...++.|...+..... .-.+. ...-....+++.+ ..+
T Consensus 301 ~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~-SgsyDG~I~~W~~~~g~---~~~~~g~~h~nqI~~~~~~-~~~ 375 (603)
T KOG0318|consen 301 TINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIY-SGSYDGHINSWDSGSGT---SDRLAGKGHTNQIKGMAAS-ESG 375 (603)
T ss_pred EEEEecccCCChhheecccccceeEEEEcCCCCEEE-eeccCceEEEEecCCcc---ccccccccccceEEEEeec-CCC
Confidence 344444443333444445667788999988765555 44556777777765443 11121 2233457788887 346
Q ss_pred eEEEEeCCCCEEEEEEcCCCce--EEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCC
Q psy13635 130 KLYWTDSETNKLEVSSLDGKKR--KVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEG 207 (357)
Q Consensus 130 ~ly~td~~~~~I~~~~~~g~~~--~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g 207 (357)
.||-+.. .+++.++++.+... ...+.- -.+|.|+|+...++.+.++... .|.... +.
T Consensus 376 ~~~t~g~-Dd~l~~~~~~~~~~t~~~~~~l-----------------g~QP~~lav~~d~~~avv~~~~--~iv~l~-~~ 434 (603)
T KOG0318|consen 376 ELFTIGW-DDTLRVISLKDNGYTKSEVVKL-----------------GSQPKGLAVLSDGGTAVVACIS--DIVLLQ-DQ 434 (603)
T ss_pred cEEEEec-CCeEEEEecccCcccccceeec-----------------CCCceeEEEcCCCCEEEEEecC--cEEEEe-cC
Confidence 6665554 56888887744321 111111 1478899998666666666553 233332 11
Q ss_pred CceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEE--EeeCCCCCceEEEEecCCCEEEEEeCCC
Q psy13635 208 THRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVL--LVKDRLGWPNGITLDVDNEKLYWCDAKT 285 (357)
Q Consensus 208 ~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~--~~~~~l~~P~giaid~~~~~lY~~d~~~ 285 (357)
+....+ . -.-.|.++|++|.....-+--.. +++....+.|....+ ........+..+++.++...|-.+|. +
T Consensus 435 ~~~~~~-~-~~y~~s~vAv~~~~~~vaVGG~D---gkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da-~ 508 (603)
T KOG0318|consen 435 TKVSSI-P-IGYESSAVAVSPDGSEVAVGGQD---GKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDA-S 508 (603)
T ss_pred Ccceee-c-cccccceEEEcCCCCEEEEeccc---ceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEecc-C
Confidence 111111 1 23478899999875444443332 688888888865322 22344566789999877777777775 4
Q ss_pred CeEEEEeCCCC
Q psy13635 286 DKIEMIDFDGN 296 (357)
Q Consensus 286 ~~I~~~~~dG~ 296 (357)
+++...+....
T Consensus 509 rkvv~yd~~s~ 519 (603)
T KOG0318|consen 509 RKVVLYDVASR 519 (603)
T ss_pred CcEEEEEcccC
Confidence 56666665443
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=93.09 E-value=8.4 Score=36.80 Aligned_cols=237 Identities=16% Similarity=0.192 Sum_probs=122.4
Q ss_pred ecCCCCeEEEEEe------CCcEEEEEcCCCCcceEeccCCCcE--EEEEEEccCCEEEEEeCCC----------CeEEE
Q psy13635 36 SHHVAAQMLLFAT------SKDIRIANLSRPLKPVTIIKDLEEG--AAIDYYYKKSMVCWTDHGT----------EMISC 97 (357)
Q Consensus 36 ~~~~~~~~l~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~--~~i~~d~~~~~ly~~d~~~----------~~I~~ 97 (357)
..++...+++++- ...++.+|+.++. .+...+..+ .++.+...+..+|++.... ..|++
T Consensus 130 ~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~---~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~ 206 (414)
T PF02897_consen 130 SVSPDGKRLAYSLSDGGSEWYTLRVFDLETGK---FLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR 206 (414)
T ss_dssp EETTTSSEEEEEEEETTSSEEEEEEEETTTTE---EEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred eECCCCCEEEEEecCCCCceEEEEEEECCCCc---CcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence 3445556666654 1247889997642 222222222 2378888778888886543 34777
Q ss_pred EEcCCCCcceeEEEEeCCcCCce---eEEEEcCCCeEEEEeC--CC-CEEEEEEcCCC-----ceEEEEecCCCCcceee
Q psy13635 98 CTFDGNNVGSKHNVITNGLITPD---GLAIDWLTEKLYWTDS--ET-NKLEVSSLDGK-----KRKVLYWEDIDQPRAIA 166 (357)
Q Consensus 98 ~~~~g~~~~~~~~~~~~~~~~p~---glavd~~~~~ly~td~--~~-~~I~~~~~~g~-----~~~~~~~~~~~~p~~i~ 166 (357)
..+.... ..-.++...-..+. ++.....++.|++... .+ ..++.++++.. ..+.+....
T Consensus 207 ~~~gt~~--~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~-------- 276 (414)
T PF02897_consen 207 HKLGTPQ--SEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE-------- 276 (414)
T ss_dssp EETTS-G--GG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS--------
T ss_pred EECCCCh--HhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC--------
Confidence 7776553 22234444434444 6777777777776543 23 46777777653 223332111
Q ss_pred eeccCcccccCCceEEEeCCCCeEEE-EeCC--CCeEEEEEcCCCc----eEEEecCCC-CCceEEEEeCCCCEEEEEeC
Q psy13635 167 SYKLPTIEVEHPDGVAVDWVARNLYW-TDTG--TDRIEVCRLEGTH----RKVLVNTDL-VEPRAITLSPAHGYLFWSDW 238 (357)
Q Consensus 167 ~~~~~~~~~~~p~glavD~~~~~lY~-td~~--~~~I~~~~~~g~~----~~~~~~~~~-~~P~giavd~~~g~Ly~~d~ 238 (357)
. -..-.++..++.+|+ |+.+ .++|.+++++... ...++...- ....++.+. .++|++...
T Consensus 277 ---------~-~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~ 344 (414)
T PF02897_consen 277 ---------D-GVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF--KDYLVLSYR 344 (414)
T ss_dssp ---------S-S-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE--TTEEEEEEE
T ss_pred ---------C-ceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE--CCEEEEEEE
Confidence 0 111234445777876 4433 3489999988654 224444321 245677666 577877766
Q ss_pred CCCCCeEEEEecC-CCceEEEeeCCCCCceEEEEecCCCEEEEEeCC---CCeEEEEeCCCCC
Q psy13635 239 NEKRPKIERSLLN-GGERVLLVKDRLGWPNGITLDVDNEKLYWCDAK---TDKIEMIDFDGNN 297 (357)
Q Consensus 239 ~~~~~~I~~~~~d-g~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~---~~~I~~~~~dG~~ 297 (357)
.....+|...+++ +.....+.........++.-+..++.+++.-.. -..++.+++....
T Consensus 345 ~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 345 ENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp ETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred ECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 5434688888888 544444432222222344444445555443321 1345555554433
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=92.83 E-value=5.8 Score=36.45 Aligned_cols=186 Identities=16% Similarity=0.128 Sum_probs=113.9
Q ss_pred EEEEEEEEeecCCCCeEEEEEe--CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCC
Q psy13635 27 LVVHFWYALSHHVAAQMLLFAT--SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNN 104 (357)
Q Consensus 27 ~~~~~~~~~~~~~~~~~l~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~ 104 (357)
.+|||-|+-- ++++. ...|+.-|...++.....+..-....++.|. +.+.++-..+..|...+++...
T Consensus 239 SVLCLqyd~r-------viisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps 308 (499)
T KOG0281|consen 239 SVLCLQYDER-------VIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPT 308 (499)
T ss_pred cEEeeeccce-------EEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCch
Confidence 4666666543 33333 4568889988877777777777788888885 4566777777888888887654
Q ss_pred cceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCc-eEEEEecCCCCcceeeeeccCcccccCCceEEE
Q psy13635 105 VGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKK-RKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAV 183 (357)
Q Consensus 105 ~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~-~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glav 183 (357)
.-....++.........+.+| + ++.++.++..+|.+.+.+... .+++. + +-.|||.
T Consensus 309 ~it~rrVLvGHrAaVNvVdfd--~-kyIVsASgDRTikvW~~st~efvRtl~----g----------------HkRGIAC 365 (499)
T KOG0281|consen 309 DITLRRVLVGHRAAVNVVDFD--D-KYIVSASGDRTIKVWSTSTCEFVRTLN----G----------------HKRGIAC 365 (499)
T ss_pred HHHHHHHHhhhhhheeeeccc--c-ceEEEecCCceEEEEeccceeeehhhh----c----------------cccccee
Confidence 101112333334445555555 3 366677788899988876543 33332 2 4456666
Q ss_pred eCCCCeEEEEeCCCCeEEEEEcC-CCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecC
Q psy13635 184 DWVARNLYWTDTGTDRIEVCRLE-GTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLN 251 (357)
Q Consensus 184 D~~~~~lY~td~~~~~I~~~~~~-g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~d 251 (357)
-.-++++.++.+..++|...+.. |.-.+++ .+.-+-.+-|-+| +.+| ++-.. .++|..-++.
T Consensus 366 lQYr~rlvVSGSSDntIRlwdi~~G~cLRvL-eGHEeLvRciRFd--~krI-VSGaY--DGkikvWdl~ 428 (499)
T KOG0281|consen 366 LQYRDRLVVSGSSDNTIRLWDIECGACLRVL-EGHEELVRCIRFD--NKRI-VSGAY--DGKIKVWDLQ 428 (499)
T ss_pred hhccCeEEEecCCCceEEEEeccccHHHHHH-hchHHhhhheeec--Ccee-eeccc--cceEEEEecc
Confidence 66788999999999999988876 4333333 2333445667777 2333 33222 2466655554
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=92.74 E-value=7.5 Score=36.41 Aligned_cols=91 Identities=13% Similarity=0.255 Sum_probs=59.1
Q ss_pred CCCeEEEEeCCCC--eEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCC--CCeEEEEecC-CCceEEEee
Q psy13635 186 VARNLYWTDTGTD--RIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEK--RPKIERSLLN-GGERVLLVK 260 (357)
Q Consensus 186 ~~~~lY~td~~~~--~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~--~~~I~~~~~d-g~~~~~~~~ 260 (357)
.++.++|.-...+ .|..++.+|...+.+..+...--.-+.+|+.++.||++-...+ ..++++++++ ++..+.+..
T Consensus 246 ~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~ 325 (353)
T PF00930_consen 246 DGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTC 325 (353)
T ss_dssp TSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESST
T ss_pred CCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccC
Confidence 4444444433444 8999999998877666554433345888999999999987632 5799999999 777766643
Q ss_pred CCCCCceEEEEecCCCE
Q psy13635 261 DRLGWPNGITLDVDNEK 277 (357)
Q Consensus 261 ~~l~~P~giaid~~~~~ 277 (357)
..... ..+++.+....
T Consensus 326 ~~~~~-~~~~~Spdg~y 341 (353)
T PF00930_consen 326 EDGDH-YSASFSPDGKY 341 (353)
T ss_dssp TSSTT-EEEEE-TTSSE
T ss_pred CCCCc-eEEEECCCCCE
Confidence 32222 47777754433
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=92.65 E-value=12 Score=37.28 Aligned_cols=184 Identities=12% Similarity=0.076 Sum_probs=107.4
Q ss_pred EEeecCCCCeEEEEEeC-CcEEEEEcCCCCcceEe-ccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEE
Q psy13635 33 YALSHHVAAQMLLFATS-KDIRIANLSRPLKPVTI-IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHN 110 (357)
Q Consensus 33 ~~~~~~~~~~~l~~~~~-~~i~~~~~~~~~~~~~~-~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~ 110 (357)
-|+..+|.+|+++.+.- .++.+.+-++..-.... +.+. ...+-.|-...+++ ++...+..|+..+.+..+ ...
T Consensus 17 KsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~-PvRa~kfiaRknWi-v~GsDD~~IrVfnynt~e---kV~ 91 (794)
T KOG0276|consen 17 KSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEV-PVRAAKFIARKNWI-VTGSDDMQIRVFNYNTGE---KVK 91 (794)
T ss_pred eeeecCCCCceEEEeeecCeeEEEecccceeeeeeeeccc-chhhheeeeccceE-EEecCCceEEEEecccce---eeE
Confidence 35677889999988874 35666666542111111 1111 11222233333433 344556688888888774 334
Q ss_pred EEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeE
Q psy13635 111 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNL 190 (357)
Q Consensus 111 ~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~l 190 (357)
.....-.....|+++| +.-...+.++.-.|...+-++...-.-.-++. -+....+++.|...+-
T Consensus 92 ~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH---------------~HyVMqv~fnPkD~nt 155 (794)
T KOG0276|consen 92 TFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEGH---------------EHYVMQVAFNPKDPNT 155 (794)
T ss_pred EeeccccceeeeeecC-CCCeEEecCCccEEEEeeccCceeeeeEEcCc---------------ceEEEEEEecCCCccc
Confidence 4444445689999997 66666788888889888888775432222221 1356678999999888
Q ss_pred EEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEe
Q psy13635 191 YWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSD 237 (357)
Q Consensus 191 Y~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d 237 (357)
|.+..-..+|-+-++......-...+.....+.+..-+...+-|...
T Consensus 156 FaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIs 202 (794)
T KOG0276|consen 156 FASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLIS 202 (794)
T ss_pred eeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEe
Confidence 88877777776666554443333333334455555554444444443
|
|
| >COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=92.60 E-value=7 Score=34.56 Aligned_cols=105 Identities=14% Similarity=0.182 Sum_probs=60.5
Q ss_pred EeCCCCEEEEEEcCCCce--EEEEecCCCCcceeeeeccCcccccCCceEEE--eCCCCeEEEEe-CCCCeEEEEEcC--
Q psy13635 134 TDSETNKLEVSSLDGKKR--KVLYWEDIDQPRAIASYKLPTIEVEHPDGVAV--DWVARNLYWTD-TGTDRIEVCRLE-- 206 (357)
Q Consensus 134 td~~~~~I~~~~~~g~~~--~~~~~~~~~~p~~i~~~~~~~~~~~~p~glav--D~~~~~lY~td-~~~~~I~~~~~~-- 206 (357)
+|..+++|..+.+|+..+ +.+.... .|- .+....|.|+++ ++.++-.|+-- ...+.|.++.+-
T Consensus 119 SdR~~~~i~~y~Idp~~~~L~sitD~n--~p~--------ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~ 188 (364)
T COG4247 119 SDRQNDKIVFYKIDPNPQYLESITDSN--APY--------SSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQ 188 (364)
T ss_pred ccccCCeEEEEEeCCCccceeeccCCC--Ccc--------ccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEec
Confidence 455567777777666543 3332111 111 334567888888 55556555432 223566665542
Q ss_pred --CCceEEEecC--CCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecC
Q psy13635 207 --GTHRKVLVNT--DLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLN 251 (357)
Q Consensus 207 --g~~~~~~~~~--~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~d 251 (357)
|.....++.+ --.+..|+..|-..|.||+++.. -.||+...+
T Consensus 189 gnGkv~~k~vR~fk~~tQTEG~VaDdEtG~LYIaeEd---vaiWK~~Ae 234 (364)
T COG4247 189 GNGKVGTKLVRQFKIPTQTEGMVADDETGFLYIAEED---VAIWKYEAE 234 (364)
T ss_pred CCceEcceeeEeeecCCcccceeeccccceEEEeecc---ceeeecccC
Confidence 3222222221 11356789999899999999987 478888764
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=92.54 E-value=11 Score=36.73 Aligned_cols=229 Identities=13% Similarity=0.077 Sum_probs=129.2
Q ss_pred CCeEEEEEe-CCcEEEEEcCCCC--cceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEc-CCCCcceeEEEEeCC
Q psy13635 40 AAQMLLFAT-SKDIRIANLSRPL--KPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTF-DGNNVGSKHNVITNG 115 (357)
Q Consensus 40 ~~~~l~~~~-~~~i~~~~~~~~~--~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~-~g~~~~~~~~~~~~~ 115 (357)
...++..+. ...++..+..+.. ....+.........++|.+. +....+-..+..|+..++ +... ...++...
T Consensus 170 ~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d-~~~l~s~s~D~tiriwd~~~~~~---~~~~l~gH 245 (456)
T KOG0266|consen 170 DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPD-GSYLLSGSDDKTLRIWDLKDDGR---NLKTLKGH 245 (456)
T ss_pred CCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCC-CcEEEEecCCceEEEeeccCCCe---EEEEecCC
Confidence 334444443 4445555553322 12222344556788899874 445666666777777777 3321 24455555
Q ss_pred cCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeC
Q psy13635 116 LITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDT 195 (357)
Q Consensus 116 ~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~ 195 (357)
.....++++++.+ ++..+-+..+.|...+..+......+..- -....++++.+ .++++++..
T Consensus 246 ~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~h----------------s~~is~~~f~~-d~~~l~s~s 307 (456)
T KOG0266|consen 246 STYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGH----------------SDGISGLAFSP-DGNLLVSAS 307 (456)
T ss_pred CCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeecc----------------CCceEEEEECC-CCCEEEEcC
Confidence 5667999999877 88888888999999998864433332211 12456788885 455666666
Q ss_pred CCCeEEEEEcCCCceE--EEecCCCCCc---eEEEEeCCCCEEEEEeCCCCCCeEEEEecCCC-ceEEEeeCCCC--Cce
Q psy13635 196 GTDRIEVCRLEGTHRK--VLVNTDLVEP---RAITLSPAHGYLFWSDWNEKRPKIERSLLNGG-ERVLLVKDRLG--WPN 267 (357)
Q Consensus 196 ~~~~I~~~~~~g~~~~--~~~~~~~~~P---~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~-~~~~~~~~~l~--~P~ 267 (357)
..+.|...|..+.... .... ....| ..+.++|...+|+..-.. +.+.-.++... ........... ...
T Consensus 308 ~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~fsp~~~~ll~~~~d---~~~~~w~l~~~~~~~~~~~~~~~~~~~~ 383 (456)
T KOG0266|consen 308 YDGTIRVWDLETGSKLCLKLLS-GAENSAPVTSVQFSPNGKYLLSASLD---RTLKLWDLRSGKSVGTYTGHSNLVRCIF 383 (456)
T ss_pred CCccEEEEECCCCceeeeeccc-CCCCCCceeEEEECCCCcEEEEecCC---CeEEEEEccCCcceeeecccCCcceeEe
Confidence 6789999998876632 2222 23444 778888765555554443 35555555422 22222111111 111
Q ss_pred EEEEecCCCEEEEEeCCCCeEEEEeCCC
Q psy13635 268 GITLDVDNEKLYWCDAKTDKIEMIDFDG 295 (357)
Q Consensus 268 giaid~~~~~lY~~d~~~~~I~~~~~dG 295 (357)
.... ..++....+-...+.|...++..
T Consensus 384 ~~~~-~~~~~~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 384 SPTL-STGGKLIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred cccc-cCCCCeEEEEeCCceEEEEeCCc
Confidence 1121 23555555555667777777764
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=92.49 E-value=7.5 Score=34.69 Aligned_cols=200 Identities=12% Similarity=0.078 Sum_probs=128.6
Q ss_pred cEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCce
Q psy13635 72 EGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKR 151 (357)
Q Consensus 72 ~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~ 151 (357)
....++..+ ++...++-..++.++..++.++. ....+...-.-..++|+++.++.| ++-+..++|...+.-|.-.
T Consensus 65 ~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g~---~t~~f~GH~~dVlsva~s~dn~qi-vSGSrDkTiklwnt~g~ck 139 (315)
T KOG0279|consen 65 FVSDVVLSS-DGNFALSASWDGTLRLWDLATGE---STRRFVGHTKDVLSVAFSTDNRQI-VSGSRDKTIKLWNTLGVCK 139 (315)
T ss_pred EecceEEcc-CCceEEeccccceEEEEEecCCc---EEEEEEecCCceEEEEecCCCcee-ecCCCcceeeeeeecccEE
Confidence 455666665 56677787778889999998864 122333334567899999766555 6777778888888766544
Q ss_pred EEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC-CCeEEEEEcCCCceEEEecCCCCCceEEEEeCCC
Q psy13635 152 KVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG-TDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAH 230 (357)
Q Consensus 152 ~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~-~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~ 230 (357)
-.+.. +. .-++...+.+.|.....|+...+ ...+.+-|+++-..+.-..+.-...+.++++|+
T Consensus 140 ~t~~~-~~--------------~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpD- 203 (315)
T KOG0279|consen 140 YTIHE-DS--------------HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPD- 203 (315)
T ss_pred EEEec-CC--------------CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCC-
Confidence 33321 11 02477888888887556555554 446777788876655444444567788999986
Q ss_pred CEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCC
Q psy13635 231 GYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNN 297 (357)
Q Consensus 231 g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~ 297 (357)
|.|.-.-.. .+.++-.+++.+....-+ +.....+.+++. .++.+.+-.....|...+++...
T Consensus 204 GslcasGgk--dg~~~LwdL~~~k~lysl-~a~~~v~sl~fs--pnrywL~~at~~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 204 GSLCASGGK--DGEAMLWDLNEGKNLYSL-EAFDIVNSLCFS--PNRYWLCAATATSIKIWDLESKA 265 (315)
T ss_pred CCEEecCCC--CceEEEEEccCCceeEec-cCCCeEeeEEec--CCceeEeeccCCceEEEeccchh
Confidence 777766333 478888888765442222 344556788874 34444455555678888877653
|
|
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=92.46 E-value=7.4 Score=34.53 Aligned_cols=137 Identities=9% Similarity=0.042 Sum_probs=76.4
Q ss_pred EEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCC-EEEEEEcCCCceEEE
Q psy13635 76 IDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETN-KLEVSSLDGKKRKVL 154 (357)
Q Consensus 76 i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~-~I~~~~~~g~~~~~~ 154 (357)
+++|+..|++||-..-..+|.... .+..++ +.+-..++.||+-+..++ +++.+..-+.....
T Consensus 36 ~avd~~sG~~~We~ilg~RiE~sa-----------~vvgdf-----VV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~- 98 (354)
T KOG4649|consen 36 IAVDPQSGNLIWEAILGVRIECSA-----------IVVGDF-----VVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR- 98 (354)
T ss_pred EEecCCCCcEEeehhhCceeeeee-----------EEECCE-----EEEEEccCcEEEEEecchhheeeeeehhhhccc-
Confidence 456778899999776665544222 122222 455567899999998776 66655443322110
Q ss_pred EecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEE
Q psy13635 155 YWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLF 234 (357)
Q Consensus 155 ~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly 234 (357)
-.+|+.+|.||. ...++..+..|+......--..-+...-.+-+++|-.+.||
T Consensus 99 --------------------------a~~d~~~glIyc-gshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly 151 (354)
T KOG4649|consen 99 --------------------------AQCDFDGGLIYC-GSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLY 151 (354)
T ss_pred --------------------------eEEcCCCceEEE-ecCCCcEEEecccccceEEecccCCceeccceecCCCceEE
Confidence 123544555553 34445566665544332111110111112335777779999
Q ss_pred EEeCCCCCCeEEEEecCCCceEEEe
Q psy13635 235 WSDWNEKRPKIERSLLNGGERVLLV 259 (357)
Q Consensus 235 ~~d~~~~~~~I~~~~~dg~~~~~~~ 259 (357)
++... +.+.+++.+-....++.
T Consensus 152 ~a~t~---G~vlavt~~~~~~~~~w 173 (354)
T KOG4649|consen 152 AAITA---GAVLAVTKNPYSSTEFW 173 (354)
T ss_pred EEecc---ceEEEEccCCCCcceeh
Confidence 99987 57877777665555544
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=92.43 E-value=10 Score=35.99 Aligned_cols=197 Identities=12% Similarity=0.090 Sum_probs=109.7
Q ss_pred CCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC
Q psy13635 117 ITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG 196 (357)
Q Consensus 117 ~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~ 196 (357)
....++..++.+..+.|++.. +.+.-.++.....-..++.. ...+ .-...++. .+|.||.+...
T Consensus 304 ~~V~~ls~h~tgeYllsAs~d-~~w~Fsd~~~g~~lt~vs~~---~s~v-----------~~ts~~fH-pDgLifgtgt~ 367 (506)
T KOG0289|consen 304 EPVTGLSLHPTGEYLLSASND-GTWAFSDISSGSQLTVVSDE---TSDV-----------EYTSAAFH-PDGLIFGTGTP 367 (506)
T ss_pred ccceeeeeccCCcEEEEecCC-ceEEEEEccCCcEEEEEeec---cccc-----------eeEEeeEc-CCceEEeccCC
Confidence 446888999877777777643 44444444333222222211 0000 23445565 35688888888
Q ss_pred CCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCC-ceEEEeeCCCCCceEEEEecCC
Q psy13635 197 TDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGG-ERVLLVKDRLGWPNGITLDVDN 275 (357)
Q Consensus 197 ~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~-~~~~~~~~~l~~P~giaid~~~ 275 (357)
++.+...++.......-..........|++.. +|+-..+.... +.|...++.-. +...+........+.+.+|..+
T Consensus 368 d~~vkiwdlks~~~~a~Fpght~~vk~i~FsE-NGY~Lat~add--~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SG 444 (506)
T KOG0289|consen 368 DGVVKIWDLKSQTNVAKFPGHTGPVKAISFSE-NGYWLATAADD--GSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSG 444 (506)
T ss_pred CceEEEEEcCCccccccCCCCCCceeEEEecc-CceEEEEEecC--CeEEEEEehhhcccceeeccccccceeEEEcCCC
Confidence 77777777765443222333334567899984 57555554442 34665555432 3334433444457889999666
Q ss_pred CEEEEEeCCCCeEEEEeCCCCCeEEEec--CCCCceEEEEEECCEEEEEeCCCCeEEEEe
Q psy13635 276 EKLYWCDAKTDKIEMIDFDGNNRRELIN--ENLPHVFGISLLGDYVYWTDWQRRSIDRVN 333 (357)
Q Consensus 276 ~~lY~~d~~~~~I~~~~~dG~~~~~i~~--~~~~~p~gia~~~~~ly~td~~~~~I~~~~ 333 (357)
.+|-.+ ...=.|+.+......=+.+.. .......|+.+.+..-|..+...+++.++-
T Consensus 445 t~L~~~-g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 445 TYLGIA-GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred CeEEee-cceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence 555444 344466666654433333322 122344667777778888887777766543
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=92.41 E-value=13 Score=37.10 Aligned_cols=31 Identities=13% Similarity=0.151 Sum_probs=20.9
Q ss_pred EEEECCEEEEEeCCCCeEEEEeCccCceeEEE
Q psy13635 312 ISLLGDYVYWTDWQRRSIDRVNKITGNDREVI 343 (357)
Q Consensus 312 ia~~~~~ly~td~~~~~I~~~~~~~g~~~~~i 343 (357)
++..++ +|+.-...+.++.+|..+|+.+-..
T Consensus 468 l~t~g~-lvf~g~~~G~l~a~D~~TGe~lw~~ 498 (527)
T TIGR03075 468 LATAGD-LVFYGTLEGYFKAFDAKTGEELWKF 498 (527)
T ss_pred eEECCc-EEEEECCCCeEEEEECCCCCEeEEE
Confidence 344445 4444456688999999999876654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=92.35 E-value=11 Score=36.05 Aligned_cols=203 Identities=14% Similarity=0.063 Sum_probs=115.9
Q ss_pred EEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceE
Q psy13635 73 GAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRK 152 (357)
Q Consensus 73 ~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~ 152 (357)
..+++-++ .|...++..-.+.||-..+..+.. ..++........-|-+. .++..++|.+.++.|.+..+--
T Consensus 84 v~al~s~n-~G~~l~ag~i~g~lYlWelssG~L---L~v~~aHYQ~ITcL~fs-~dgs~iiTgskDg~V~vW~l~~---- 154 (476)
T KOG0646|consen 84 VHALASSN-LGYFLLAGTISGNLYLWELSSGIL---LNVLSAHYQSITCLKFS-DDGSHIITGSKDGAVLVWLLTD---- 154 (476)
T ss_pred eeeeecCC-CceEEEeecccCcEEEEEeccccH---HHHHHhhccceeEEEEe-CCCcEEEecCCCccEEEEEEEe----
Confidence 45666665 555556665677888888877642 22334445667777776 5788888988888888765411
Q ss_pred EEEecCCC-CcceeeeeccCcccccCCceEEEeC--CCCeEEEEeCCCCeEEEEEcCCCce-EEEecCCCCCceEEEEeC
Q psy13635 153 VLYWEDID-QPRAIASYKLPTIEVEHPDGVAVDW--VARNLYWTDTGTDRIEVCRLEGTHR-KVLVNTDLVEPRAITLSP 228 (357)
Q Consensus 153 ~~~~~~~~-~p~~i~~~~~~~~~~~~p~glavD~--~~~~lY~td~~~~~I~~~~~~g~~~-~~~~~~~~~~P~giavd~ 228 (357)
++...-+ .|.++.. -.+-.-...++.++. .+.+|| |-...+.+...++.+... ..+.. -..+..+++||
T Consensus 155 -lv~a~~~~~~~p~~~---f~~HtlsITDl~ig~Gg~~~rl~-TaS~D~t~k~wdlS~g~LLlti~f--p~si~av~lDp 227 (476)
T KOG0646|consen 155 -LVSADNDHSVKPLHI---FSDHTLSITDLQIGSGGTNARLY-TASEDRTIKLWDLSLGVLLLTITF--PSSIKAVALDP 227 (476)
T ss_pred -ecccccCCCccceee---eccCcceeEEEEecCCCccceEE-EecCCceEEEEEeccceeeEEEec--CCcceeEEEcc
Confidence 1110000 0111100 000000223444432 345666 334445666666664432 22222 24688999999
Q ss_pred CCCEEEEEeCCCCCCeEEEEecCCCc-----------------eEEEeeCCC-CCceEEEEecCCCEEEEEeCCCCeEEE
Q psy13635 229 AHGYLFWSDWNEKRPKIERSLLNGGE-----------------RVLLVKDRL-GWPNGITLDVDNEKLYWCDAKTDKIEM 290 (357)
Q Consensus 229 ~~g~Ly~~d~~~~~~~I~~~~~dg~~-----------------~~~~~~~~l-~~P~giaid~~~~~lY~~d~~~~~I~~ 290 (357)
.+.++|+-... ++|+..++.+.. ...+....- .....|++. .++.|..+-...+.+..
T Consensus 228 ae~~~yiGt~~---G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais-~DgtlLlSGd~dg~Vcv 303 (476)
T KOG0646|consen 228 AERVVYIGTEE---GKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIS-TDGTLLLSGDEDGKVCV 303 (476)
T ss_pred cccEEEecCCc---ceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEe-cCccEEEeeCCCCCEEE
Confidence 98888887665 688887765432 112221111 256789997 67888888777778777
Q ss_pred EeCCC
Q psy13635 291 IDFDG 295 (357)
Q Consensus 291 ~~~dG 295 (357)
.+.-.
T Consensus 304 Wdi~S 308 (476)
T KOG0646|consen 304 WDIYS 308 (476)
T ss_pred Eecch
Confidence 77543
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=92.31 E-value=12 Score=36.53 Aligned_cols=247 Identities=12% Similarity=0.119 Sum_probs=138.9
Q ss_pred CcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEc-CC-
Q psy13635 71 EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSL-DG- 148 (357)
Q Consensus 71 ~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~-~g- 148 (357)
.....++|.+.+.. .++-..++.|.-....+... .....+........++++.+ ++....+-...++|...+. +.
T Consensus 160 ~sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~-d~~~l~s~s~D~tiriwd~~~~~ 236 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSP-DGSYLLSGSDDKTLRIWDLKDDG 236 (456)
T ss_pred CceEEEEEcCCCCe-EEEccCCCcEEEeecccccc-hhhccccccccceeeeEECC-CCcEEEEecCCceEEEeeccCCC
Confidence 44566788876655 55555555555555533320 01112233345578888986 4556667777888888887 33
Q ss_pred CceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeC
Q psy13635 149 KKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSP 228 (357)
Q Consensus 149 ~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~ 228 (357)
...+++... -....++++.+.+ +++++....+.|..-+..+......+...-..-.++++.+
T Consensus 237 ~~~~~l~gH-----------------~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~ 298 (456)
T KOG0266|consen 237 RNLKTLKGH-----------------STYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP 298 (456)
T ss_pred eEEEEecCC-----------------CCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC
Confidence 333444211 1256889999877 8888888888899888886444444444455778899997
Q ss_pred CCCEEEEEeCCCCCCeEEEEecCCCceE--EEeeCCCCCc---eEEEEecCCCEEEEEeCCCCeEEEEeCCCC-CeEEEe
Q psy13635 229 AHGYLFWSDWNEKRPKIERSLLNGGERV--LLVKDRLGWP---NGITLDVDNEKLYWCDAKTDKIEMIDFDGN-NRRELI 302 (357)
Q Consensus 229 ~~g~Ly~~d~~~~~~~I~~~~~dg~~~~--~~~~~~l~~P---~giaid~~~~~lY~~d~~~~~I~~~~~dG~-~~~~i~ 302 (357)
. |.++++-... +.|...+....... ..+. +...| ..+.+++.+ ...++-...+.+...++... ......
T Consensus 299 d-~~~l~s~s~d--~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~~~~~~~~~ 373 (456)
T KOG0266|consen 299 D-GNLLVSASYD--GTIRVWDLETGSKLCLKLLS-GAENSAPVTSVQFSPNG-KYLLSASLDRTLKLWDLRSGKSVGTYT 373 (456)
T ss_pred C-CCEEEEcCCC--ccEEEEECCCCceeeeeccc-CCCCCCceeEEEECCCC-cEEEEecCCCeEEEEEccCCcceeeec
Confidence 6 6666666553 58888888877632 2222 22233 677777544 44445555556666666532 222221
Q ss_pred cCCCC--ceEEEEEE-CCEEEEEeCCCCeEEEEeCccCceeEEE
Q psy13635 303 NENLP--HVFGISLL-GDYVYWTDWQRRSIDRVNKITGNDREVI 343 (357)
Q Consensus 303 ~~~~~--~p~gia~~-~~~ly~td~~~~~I~~~~~~~g~~~~~i 343 (357)
.-... -.+..... ++....+-...+.|...+..++..+..+
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l 417 (456)
T KOG0266|consen 374 GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL 417 (456)
T ss_pred ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh
Confidence 10111 11111112 3444445455566666666544444433
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=92.28 E-value=11 Score=36.30 Aligned_cols=179 Identities=12% Similarity=0.069 Sum_probs=106.2
Q ss_pred EEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCC-cCCceeEEEEcCCCe
Q psy13635 52 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNG-LITPDGLAIDWLTEK 130 (357)
Q Consensus 52 i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~-~~~p~glavd~~~~~ 130 (357)
+.+.|+....-...+........+|+|...+..|-=...+ +.|..-.+.... ..+.+..+ -....=+.+.+..+.
T Consensus 103 Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~g-Gdiiih~~~t~~---~tt~f~~~sgqsvRll~ys~skr~ 178 (673)
T KOG4378|consen 103 VKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDG-GDIIIHGTKTKQ---KTTTFTIDSGQSVRLLRYSPSKRF 178 (673)
T ss_pred eeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccC-CcEEEEecccCc---cccceecCCCCeEEEeecccccce
Confidence 4445553322223333344567888887766655322222 333333333221 12222222 233456677888888
Q ss_pred EEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCce
Q psy13635 131 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHR 210 (357)
Q Consensus 131 ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~ 210 (357)
|..+-+.+|.|...+..|.....-...... .-..||.+.|.+..|+++-....+|..+|......
T Consensus 179 lL~~asd~G~VtlwDv~g~sp~~~~~~~Hs---------------AP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s 243 (673)
T KOG4378|consen 179 LLSIASDKGAVTLWDVQGMSPIFHASEAHS---------------APCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS 243 (673)
T ss_pred eeEeeccCCeEEEEeccCCCcccchhhhcc---------------CCcCcceecCCccceEEEecccceEEEeecccccc
Confidence 988888899999999988765443322211 13578999999999999988888999988764332
Q ss_pred E-EEecCCCCCc-eEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCce
Q psy13635 211 K-VLVNTDLVEP-RAITLSPAHGYLFWSDWNEKRPKIERSLLNGGER 255 (357)
Q Consensus 211 ~-~~~~~~~~~P-~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~ 255 (357)
. .+.. .+| ..+++.+. |....+-.. +++|...++.+...
T Consensus 244 ~~~l~y---~~Plstvaf~~~-G~~L~aG~s--~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 244 TDRLTY---SHPLSTVAFSEC-GTYLCAGNS--KGELIAYDMRSTKA 284 (673)
T ss_pred cceeee---cCCcceeeecCC-ceEEEeecC--CceEEEEecccCCC
Confidence 1 2221 234 46777754 665555544 47888888887644
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=92.04 E-value=9.3 Score=34.73 Aligned_cols=224 Identities=12% Similarity=0.052 Sum_probs=126.2
Q ss_pred eEEEEEe-CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCC--EEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCC
Q psy13635 42 QMLLFAT-SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKS--MVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLIT 118 (357)
Q Consensus 42 ~~l~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~--~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 118 (357)
|++.-.+ +..|+.+|+....+...+....+...++.|.+.-. .| .+...++.|...+...-. ....+...-..
T Consensus 54 ~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shL-lS~sdDG~i~iw~~~~W~---~~~slK~H~~~ 129 (362)
T KOG0294|consen 54 PYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHL-LSGSDDGHIIIWRVGSWE---LLKSLKAHKGQ 129 (362)
T ss_pred eeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhhe-eeecCCCcEEEEEcCCeE---Eeeeecccccc
Confidence 4444333 34599999988666777777788889998886543 22 244455666655554432 12222233345
Q ss_pred ceeEEEEcCCCeEEEEeCCCCEEEEEEc-CCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCC
Q psy13635 119 PDGLAIDWLTEKLYWTDSETNKLEVSSL-DGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGT 197 (357)
Q Consensus 119 p~glavd~~~~~ly~td~~~~~I~~~~~-~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~ 197 (357)
..+|+++| +++|-.+=.+.+.+...++ .|+.-.++-.. +.+.-+..++.+.+.++.-.
T Consensus 130 Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~------------------~~at~v~w~~~Gd~F~v~~~-- 188 (362)
T KOG0294|consen 130 VTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNLK------------------NKATLVSWSPQGDHFVVSGR-- 188 (362)
T ss_pred cceeEecC-CCceEEEEcCCceeeeehhhcCccceeeccC------------------CcceeeEEcCCCCEEEEEec--
Confidence 89999996 7889888888888888776 33332222101 24555777766665655544
Q ss_pred CeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEE-EecCCC
Q psy13635 198 DRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGIT-LDVDNE 276 (357)
Q Consensus 198 ~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~gia-id~~~~ 276 (357)
++|....++....-..+. .-..+..+.+. ..+.|.+.-.. ..|...+.|...........-.+.-+++ ++..++
T Consensus 189 ~~i~i~q~d~A~v~~~i~-~~~r~l~~~~l-~~~~L~vG~d~---~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~ 263 (362)
T KOG0294|consen 189 NKIDIYQLDNASVFREIE-NPKRILCATFL-DGSELLVGGDN---EWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEH 263 (362)
T ss_pred cEEEEEecccHhHhhhhh-ccccceeeeec-CCceEEEecCC---ceEEEeccCCCccceeeecchhheeeeEEEecCCc
Confidence 466666655432211111 11334445554 34566665433 4666666664222222222223444565 444556
Q ss_pred EEEEEeCCCCeEEEEeCCC
Q psy13635 277 KLYWCDAKTDKIEMIDFDG 295 (357)
Q Consensus 277 ~lY~~d~~~~~I~~~~~dG 295 (357)
.+.++-+..|.|..-+.+-
T Consensus 264 ~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 264 EYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred eEEEEeccCceEEEEEccc
Confidence 7777777777776666654
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=91.98 E-value=11 Score=35.38 Aligned_cols=236 Identities=12% Similarity=0.091 Sum_probs=125.3
Q ss_pred eecCCCCeEEEEEeCCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCe--EEEEEcCCCCc--ceeEE
Q psy13635 35 LSHHVAAQMLLFATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEM--ISCCTFDGNNV--GSKHN 110 (357)
Q Consensus 35 ~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~--I~~~~~~g~~~--~~~~~ 110 (357)
.-.++..+|+.+... .+-|+|- .+.+.-..-.....+++.|.++.+.=+...+.. |+.+.-+|... .+...
T Consensus 51 ~easgGgaf~ViPl~-k~Gr~d~----~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv 125 (472)
T KOG0303|consen 51 IEASGGGAFLVIPLV-KTGRMDA----SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVV 125 (472)
T ss_pred EecCCCcceeecccc-cccccCC----CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceE
Confidence 345566677766554 3444443 222222333445677788877776655444443 45555455432 11222
Q ss_pred EEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeE
Q psy13635 111 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNL 190 (357)
Q Consensus 111 ~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~l 190 (357)
.+........-++.++...++..+....+.|...+.......+.. ..|- ....+.+. .+|.+
T Consensus 126 ~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l----~hpd-------------~i~S~sfn-~dGs~ 187 (472)
T KOG0303|consen 126 ELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITL----DHPD-------------MVYSMSFN-RDGSL 187 (472)
T ss_pred EEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeec----CCCC-------------eEEEEEec-cCCce
Confidence 333333455667889999999999988899998887654322211 1111 12345555 56778
Q ss_pred EEEeCCCCeEEEEEcCCCc-eEEE-ecCCCCCceEEEEeCCCCEEEEEeCCCC-CCeEEEEecCCCceEEEeeCCCCCce
Q psy13635 191 YWTDTGTDRIEVCRLEGTH-RKVL-VNTDLVEPRAITLSPAHGYLFWSDWNEK-RPKIERSLLNGGERVLLVKDRLGWPN 267 (357)
Q Consensus 191 Y~td~~~~~I~~~~~~g~~-~~~~-~~~~~~~P~giavd~~~g~Ly~~d~~~~-~~~I~~~~~dg~~~~~~~~~~l~~P~ 267 (357)
++|.....+|.++++.... .... ..++...++.|-+. +|.++-|-.... ..++.--+.+.-+. .+....+..-+
T Consensus 188 l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~--~g~i~tTGfsr~seRq~aLwdp~nl~e-P~~~~elDtSn 264 (472)
T KOG0303|consen 188 LCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA--SGKIFTTGFSRMSERQIALWDPNNLEE-PIALQELDTSN 264 (472)
T ss_pred eeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec--cCceeeeccccccccceeccCcccccC-cceeEEeccCC
Confidence 8888877899999887433 2222 22233445555554 466655544321 11221111111100 01112223333
Q ss_pred EEE---EecCCCEEEEEeCCCCeEEEEeCCCC
Q psy13635 268 GIT---LDVDNEKLYWCDAKTDKIEMIDFDGN 296 (357)
Q Consensus 268 gia---id~~~~~lY~~d~~~~~I~~~~~dG~ 296 (357)
|+- .|++.+-||.+-.+.+.|+.+.....
T Consensus 265 Gvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 265 GVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred ceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 443 35667778888877777777766443
|
|
| >COG3211 PhoX Predicted phosphatase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.95 E-value=2.1 Score=41.91 Aligned_cols=123 Identities=15% Similarity=0.128 Sum_probs=66.3
Q ss_pred CcCCceeEEEEcCCCeEEEEeCCCC----------------EEEEEEcCCC-------ceEEEEecCCCCcceeee---e
Q psy13635 115 GLITPDGLAIDWLTEKLYWTDSETN----------------KLEVSSLDGK-------KRKVLYWEDIDQPRAIAS---Y 168 (357)
Q Consensus 115 ~~~~p~glavd~~~~~ly~td~~~~----------------~I~~~~~~g~-------~~~~~~~~~~~~p~~i~~---~ 168 (357)
....|+++++.+..+.+|++..+++ +|.|+...+. .-+.++..+ +|..+-. -
T Consensus 415 ~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG--~~~~~~~~~~~ 492 (616)
T COG3211 415 PMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAG--NPSVLEGGASA 492 (616)
T ss_pred cccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecC--Ccccccccccc
Confidence 3578999999999999999986544 5666655432 112222211 1111000 0
Q ss_pred ccCcccccCCceEEEeCCCCeEEEE-eCCCC----eEEEEE----cCCC--ceEEEecCC-CCCceEEEEeCCCCEEEEE
Q psy13635 169 KLPTIEVEHPDGVAVDWVARNLYWT-DTGTD----RIEVCR----LEGT--HRKVLVNTD-LVEPRAITLSPAHGYLFWS 236 (357)
Q Consensus 169 ~~~~~~~~~p~glavD~~~~~lY~t-d~~~~----~I~~~~----~~g~--~~~~~~~~~-~~~P~giavd~~~g~Ly~~ 236 (357)
.+...-|..|.+|+||+. |+|+++ |.... +..-.. .++. ..+..+... -..-.|.++.|+.+.||+.
T Consensus 493 ~~~~~~f~~PDnl~fD~~-GrLWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~ 571 (616)
T COG3211 493 NINANWFNSPDNLAFDPW-GRLWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVN 571 (616)
T ss_pred CcccccccCCCceEECCC-CCEEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEE
Confidence 011234677999999965 566654 44432 111111 2221 111122111 1345688999988889888
Q ss_pred eCCC
Q psy13635 237 DWNE 240 (357)
Q Consensus 237 d~~~ 240 (357)
-...
T Consensus 572 vQHP 575 (616)
T COG3211 572 VQHP 575 (616)
T ss_pred ecCC
Confidence 7663
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=91.81 E-value=14 Score=36.40 Aligned_cols=216 Identities=11% Similarity=0.008 Sum_probs=113.2
Q ss_pred cCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeC
Q psy13635 116 LITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDT 195 (357)
Q Consensus 116 ~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~ 195 (357)
-....++++++..++++++-+.++.|...++.......- ...| +.. ...--.....+++.+..+.+.++-.
T Consensus 75 ~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~----~~~~--l~~---L~gH~~~V~~l~f~P~~~~iLaSgs 145 (493)
T PTZ00421 75 EGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN----ISDP--IVH---LQGHTKKVGIVSFHPSAMNVLASAG 145 (493)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc----cCcc--eEE---ecCCCCcEEEEEeCcCCCCEEEEEe
Confidence 345678888875666777777888999888753211000 0000 000 0001124567888877667777777
Q ss_pred CCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCC-CCCceEEEEecC
Q psy13635 196 GTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDR-LGWPNGITLDVD 274 (357)
Q Consensus 196 ~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~-l~~P~giaid~~ 274 (357)
..+.|..-++........+........+++++|. |.+..+-... +.|...++........+... -.....+...+.
T Consensus 146 ~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spd-G~lLatgs~D--g~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~ 222 (493)
T PTZ00421 146 ADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLD-GSLLCTTSKD--KKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKR 222 (493)
T ss_pred CCCEEEEEECCCCeEEEEEcCCCCceEEEEEECC-CCEEEEecCC--CEEEEEECCCCcEEEEEecCCCCcceEEEEcCC
Confidence 7788888888754433333333445788999986 5555554442 47777777543332222111 111223344334
Q ss_pred CCEEEEEe---CCCCeEEEEeCCCCC-eEEEecCCCCceEEE-EEE--CCEEEEEeCCCCeEEEEeCccCceeEEE
Q psy13635 275 NEKLYWCD---AKTDKIEMIDFDGNN-RRELINENLPHVFGI-SLL--GDYVYWTDWQRRSIDRVNKITGNDREVI 343 (357)
Q Consensus 275 ~~~lY~~d---~~~~~I~~~~~dG~~-~~~i~~~~~~~p~gi-a~~--~~~ly~td~~~~~I~~~~~~~g~~~~~i 343 (357)
.+.+..+- ...+.|...|+.... ..............+ .++ ++.+|.+..+.+.|+..+..+++.....
T Consensus 223 ~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~ 298 (493)
T PTZ00421 223 KDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS 298 (493)
T ss_pred CCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence 44554332 224567777764322 211111111112222 233 3556666555678888887666654443
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=91.51 E-value=12 Score=35.13 Aligned_cols=145 Identities=14% Similarity=0.071 Sum_probs=80.3
Q ss_pred CCCeEEEEeCCCCeEEEEEcCCCceE---EEe--cCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEec-CCCceEEEe
Q psy13635 186 VARNLYWTDTGTDRIEVCRLEGTHRK---VLV--NTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLL-NGGERVLLV 259 (357)
Q Consensus 186 ~~~~lY~td~~~~~I~~~~~~g~~~~---~~~--~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~-dg~~~~~~~ 259 (357)
.++++|+. ...+.|...++++.... .+. ...+..|... + .|+||+.++. ++++..+. +|......-
T Consensus 67 ~dg~v~~~-~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~--~--~G~i~~g~~~---g~~y~ld~~~G~~~W~~~ 138 (370)
T COG1520 67 GDGTVYVG-TRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILG--S--DGKIYVGSWD---GKLYALDASTGTLVWSRN 138 (370)
T ss_pred eCCeEEEe-cCCCcEEEEeCCCCcEEecccCcCcceeccCceEE--e--CCeEEEeccc---ceEEEEECCCCcEEEEEe
Confidence 46788876 33347777777755421 111 0122333333 3 5889999887 47888888 666554443
Q ss_pred eCC-CCCceEEEEecCCCEEEEEeCCCCeEEEEeCC-CCCeEEEecC---CCCceEEEEEECCEEEEEeCC-CCeEEEEe
Q psy13635 260 KDR-LGWPNGITLDVDNEKLYWCDAKTDKIEMIDFD-GNNRRELINE---NLPHVFGISLLGDYVYWTDWQ-RRSIDRVN 333 (357)
Q Consensus 260 ~~~-l~~P~giaid~~~~~lY~~d~~~~~I~~~~~d-G~~~~~i~~~---~~~~p~gia~~~~~ly~td~~-~~~I~~~~ 333 (357)
... .....+..+ .++.+|+.. ..+.++.++.+ |..+=..-.. .........+.++.+|+.... ++.++.++
T Consensus 139 ~~~~~~~~~~~v~--~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~ 215 (370)
T COG1520 139 VGGSPYYASPPVV--GDGTVYVGT-DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALN 215 (370)
T ss_pred cCCCeEEecCcEE--cCcEEEEec-CCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEE
Confidence 233 111122222 567788774 45788888876 6543221110 111122222567888887653 44678888
Q ss_pred CccCceeE
Q psy13635 334 KITGNDRE 341 (357)
Q Consensus 334 ~~~g~~~~ 341 (357)
..+|+..-
T Consensus 216 ~~~G~~~w 223 (370)
T COG1520 216 AEDGTLKW 223 (370)
T ss_pred ccCCcEee
Confidence 77777544
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=91.46 E-value=9.4 Score=36.56 Aligned_cols=199 Identities=12% Similarity=0.078 Sum_probs=113.1
Q ss_pred cEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCce
Q psy13635 72 EGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKR 151 (357)
Q Consensus 72 ~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~ 151 (357)
...++.+-+..+.|+.+...++.|+..+.-+.. .........-.....+++.. .+.=|.+-+-...|.-.+......
T Consensus 216 gvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~--~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~lKlwDtETG~~ 292 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR--RCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRFLKLWDTETGQV 292 (503)
T ss_pred ccchhhhccceeeEEEecCCCceEEEEEEecCc--ceehhhhcchhhhhhhhccc-cCCeeeeeecceeeeeeccccceE
Confidence 355667777788999998888888877765531 11222221222334455553 333444444455555555544433
Q ss_pred EEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCC
Q psy13635 152 KVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHG 231 (357)
Q Consensus 152 ~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g 231 (357)
..-+..+ .-|..+.+.|.+.++|++....++|...|........-....+.....|.+-+ .|
T Consensus 293 ~~~f~~~-----------------~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~-~g 354 (503)
T KOG0282|consen 293 LSRFHLD-----------------KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVD-EG 354 (503)
T ss_pred EEEEecC-----------------CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEcc-CC
Confidence 3333322 25777888888889999999999999998775432111123466677788775 46
Q ss_pred EEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeC
Q psy13635 232 YLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDF 293 (357)
Q Consensus 232 ~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~ 293 (357)
+=|++......-+|+-....-- ...+.......--.+++. .++..+.+..-.+.|..+..
T Consensus 355 ~rFissSDdks~riWe~~~~v~-ik~i~~~~~hsmP~~~~~-P~~~~~~aQs~dN~i~ifs~ 414 (503)
T KOG0282|consen 355 RRFISSSDDKSVRIWENRIPVP-IKNIADPEMHTMPCLTLH-PNGKWFAAQSMDNYIAIFST 414 (503)
T ss_pred ceEeeeccCccEEEEEcCCCcc-chhhcchhhccCcceecC-CCCCeehhhccCceEEEEec
Confidence 6677666543234443332211 111111222222356665 56777778877788777754
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=90.90 E-value=17 Score=35.71 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=23.8
Q ss_pred EEEECCEEEEEeCCCCeEEEEeCccCceeEEE
Q psy13635 312 ISLLGDYVYWTDWQRRSIDRVNKITGNDREVI 343 (357)
Q Consensus 312 ia~~~~~ly~td~~~~~I~~~~~~~g~~~~~i 343 (357)
+++.++.||+.+ ..+.|+.+++.+|+.+-..
T Consensus 402 ~~~~g~~v~~g~-~dG~l~ald~~tG~~lW~~ 432 (488)
T cd00216 402 LATAGNLVFAGA-ADGYFRAFDATTGKELWKF 432 (488)
T ss_pred eEecCCeEEEEC-CCCeEEEEECCCCceeeEE
Confidence 566778899887 5688999998888866543
|
The alignment model contains an 8-bladed beta-propeller. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.77 E-value=9.9 Score=32.66 Aligned_cols=193 Identities=13% Similarity=0.154 Sum_probs=96.2
Q ss_pred cEEEEEEEccCCEEEEEeC--CCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCC
Q psy13635 72 EGAAIDYYYKKSMVCWTDH--GTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGK 149 (357)
Q Consensus 72 ~~~~i~~d~~~~~ly~~d~--~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~ 149 (357)
...|+.++ ++.||.+-. +..+|++.++.+... ...+.+...-..-+|+..- ++.+|.--...+.-.+++.+.-
T Consensus 47 fTQGL~~~--~g~i~esTG~yg~S~ir~~~L~~gq~-~~s~~l~~~~~FgEGit~~--gd~~y~LTw~egvaf~~d~~t~ 121 (262)
T COG3823 47 FTQGLEYL--DGHILESTGLYGFSKIRVSDLTTGQE-IFSEKLAPDTVFGEGITKL--GDYFYQLTWKEGVAFKYDADTL 121 (262)
T ss_pred hhcceeee--CCEEEEeccccccceeEEEeccCceE-EEEeecCCccccccceeec--cceEEEEEeccceeEEEChHHh
Confidence 34566665 568887744 334788888886520 1111222112223555542 5556655544444444444321
Q ss_pred ce-EEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCC--ceEEEec-C--CCCCceE
Q psy13635 150 KR-KVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGT--HRKVLVN-T--DLVEPRA 223 (357)
Q Consensus 150 ~~-~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~--~~~~~~~-~--~~~~P~g 223 (357)
.. ..+--+ ..-.||+-| +.+|..+|.. ..++--|+..- ..++.+. . ....-+-
T Consensus 122 ~~lg~~~y~------------------GeGWgLt~d--~~~LimsdGs-atL~frdP~tfa~~~~v~VT~~g~pv~~LNE 180 (262)
T COG3823 122 EELGRFSYE------------------GEGWGLTSD--DKNLIMSDGS-ATLQFRDPKTFAELDTVQVTDDGVPVSKLNE 180 (262)
T ss_pred hhhcccccC------------------CcceeeecC--CcceEeeCCc-eEEEecCHHHhhhcceEEEEECCeecccccc
Confidence 11 011000 122455555 3445555443 34443333210 0111111 0 1111222
Q ss_pred EEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEee-C-----------CCCCceEEEEecCCCEEEEEeCCCCeEEEE
Q psy13635 224 ITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVK-D-----------RLGWPNGITLDVDNEKLYWCDAKTDKIEMI 291 (357)
Q Consensus 224 iavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~-~-----------~l~~P~giaid~~~~~lY~~d~~~~~I~~~ 291 (357)
+.. -.|.||---|.+. +|.|++++.+.....+. + ...-++|||.|+..+++|++-..-..+.-+
T Consensus 181 LE~--VdG~lyANVw~t~--~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~lfEV 256 (262)
T COG3823 181 LEW--VDGELYANVWQTT--RIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKLWPLLFEV 256 (262)
T ss_pred eee--eccEEEEeeeeec--ceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCcCceeEEE
Confidence 222 2488887777754 99999988765544432 1 234589999999999999986554555555
Q ss_pred eCC
Q psy13635 292 DFD 294 (357)
Q Consensus 292 ~~d 294 (357)
.++
T Consensus 257 k~~ 259 (262)
T COG3823 257 KLD 259 (262)
T ss_pred Eec
Confidence 443
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=90.53 E-value=17 Score=34.92 Aligned_cols=186 Identities=9% Similarity=0.004 Sum_probs=108.6
Q ss_pred EEEEEeCCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeE
Q psy13635 43 MLLFATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGL 122 (357)
Q Consensus 43 ~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~gl 122 (357)
||-.+-+..|+..|.+.+ ....-...-.-|.-+.++|.+.++|++...+++|...++..+..+ ......+.....|
T Consensus 273 fLS~sfD~~lKlwDtETG-~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvv---qeYd~hLg~i~~i 348 (503)
T KOG0282|consen 273 FLSASFDRFLKLWDTETG-QVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVV---QEYDRHLGAILDI 348 (503)
T ss_pred eeeeecceeeeeeccccc-eEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHH---HHHHhhhhheeee
Confidence 333333445666666552 333334445568888999988899999999999999999877532 1222345566777
Q ss_pred EEEcCCCeEEEEeCCCCEEEEEEcCCCce-EEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEE
Q psy13635 123 AIDWLTEKLYWTDSETNKLEVSSLDGKKR-KVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIE 201 (357)
Q Consensus 123 avd~~~~~ly~td~~~~~I~~~~~~g~~~-~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~ 201 (357)
.+=+ .+.=|++.+..+.+...+.+-... +.+. .+ ....-..+++.| ++..+.+....++|.
T Consensus 349 ~F~~-~g~rFissSDdks~riWe~~~~v~ik~i~-----~~-----------~~hsmP~~~~~P-~~~~~~aQs~dN~i~ 410 (503)
T KOG0282|consen 349 TFVD-EGRRFISSSDDKSVRIWENRIPVPIKNIA-----DP-----------EMHTMPCLTLHP-NGKWFAAQSMDNYIA 410 (503)
T ss_pred EEcc-CCceEeeeccCccEEEEEcCCCccchhhc-----ch-----------hhccCcceecCC-CCCeehhhccCceEE
Confidence 7753 666777777777776665432211 1111 11 112233456664 446666777777777
Q ss_pred EEEcCCCce---EEEecC--CCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCC
Q psy13635 202 VCRLEGTHR---KVLVNT--DLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGG 253 (357)
Q Consensus 202 ~~~~~g~~~---~~~~~~--~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~ 253 (357)
.+...-..+ +....+ --..+..+.++|+.+.|.--|.. ++++..+....
T Consensus 411 ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsd---G~v~~wdwkt~ 464 (503)
T KOG0282|consen 411 IFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSD---GKVNFWDWKTT 464 (503)
T ss_pred EEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCC---ccEEEeechhh
Confidence 766443221 111111 12357788888876666666655 56666665443
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=90.34 E-value=21 Score=35.73 Aligned_cols=209 Identities=15% Similarity=0.065 Sum_probs=123.3
Q ss_pred ccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeC---CcCCceeEEEEcCCCeEEEEeCCCCEEEE
Q psy13635 67 IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN---GLITPDGLAIDWLTEKLYWTDSETNKLEV 143 (357)
Q Consensus 67 ~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~---~~~~p~glavd~~~~~ly~td~~~~~I~~ 143 (357)
.+...+...-++.|..+.|-++-...-+||+...++.- . ...+.. -+.....+.+--..++++++......+..
T Consensus 379 ~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~v--k-~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~ 455 (691)
T KOG2048|consen 379 TKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNV--K-VINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEE 455 (691)
T ss_pred cCCccceeeeccCCCCCEEEEeeccceEEEEeccCcce--e-EEEeccchhhhccceeeEEEecCceEEEEecccceeEE
Confidence 34555666667889999999988888899999998842 1 111111 11122333333336667666656667777
Q ss_pred EEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceE
Q psy13635 144 SSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRA 223 (357)
Q Consensus 144 ~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~g 223 (357)
+.+++...+.+.... +........-|++.+.++.|-+++ ..+.|.+.++.+...+.+...--..-..
T Consensus 456 ~el~~ps~kel~~~~------------~~~~~~~I~~l~~SsdG~yiaa~~-t~g~I~v~nl~~~~~~~l~~rln~~vTa 522 (691)
T KOG2048|consen 456 FELETPSFKELKSIQ------------SQAKCPSISRLVVSSDGNYIAAIS-TRGQIFVYNLETLESHLLKVRLNIDVTA 522 (691)
T ss_pred EEecCcchhhhhccc------------cccCCCcceeEEEcCCCCEEEEEe-ccceEEEEEcccceeecchhccCcceee
Confidence 777665443332111 122334556778887788777776 4578999999987766555321123344
Q ss_pred EEEe-CCCCEEEEEeCCCCCCeEEEEecCCCceEEE-----------eeCCCCCceEEEEecCCCEEEEEeCCCCeEEEE
Q psy13635 224 ITLS-PAHGYLFWSDWNEKRPKIERSLLNGGERVLL-----------VKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMI 291 (357)
Q Consensus 224 iavd-~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~-----------~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~ 291 (357)
.++. +..++|-+++.. ++++-.++...+.... ..+-.....|+.+|+.+...+|.- ..+-+..+
T Consensus 523 ~~~~~~~~~~lvvats~---nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s~~~~~-~a~w~~~i 598 (691)
T KOG2048|consen 523 AAFSPFVRNRLVVATSN---NQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPGIPGISFDPKNSSRFIVY-DAHWSCLI 598 (691)
T ss_pred eeccccccCcEEEEecC---CeEEEEecchhhhhhhhhccccccccChhhcCCCCceEEeCCCCccEEEEE-cCcEEEEE
Confidence 5555 345678787776 4777777743322111 011123346899986665555553 45567777
Q ss_pred eCCC
Q psy13635 292 DFDG 295 (357)
Q Consensus 292 ~~dG 295 (357)
+.++
T Consensus 599 d~~~ 602 (691)
T KOG2048|consen 599 DFSL 602 (691)
T ss_pred ecCC
Confidence 7665
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=90.23 E-value=26 Score=36.57 Aligned_cols=236 Identities=9% Similarity=0.041 Sum_probs=125.3
Q ss_pred EeecCCCCeEEEEEeCCc-EEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEE
Q psy13635 34 ALSHHVAAQMLLFATSKD-IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI 112 (357)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~ 112 (357)
+++-++..|+++.+.... |+-.|-.=..=....-+.-+...|++|++ ++-||++...+-+|...+....- ....+
T Consensus 14 glsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~-~qplFVSGGDDykIkVWnYk~rr---clftL 89 (1202)
T KOG0292|consen 14 GLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWNYKTRR---CLFTL 89 (1202)
T ss_pred ceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecC-CCCeEEecCCccEEEEEecccce---ehhhh
Confidence 556688899998887544 44443210000011123445678999997 68899998888888888877653 23344
Q ss_pred eCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEE
Q psy13635 113 TNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYW 192 (357)
Q Consensus 113 ~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~ 192 (357)
...+.....+.+++.- --..+.++.++|...+......-.+.. +-. +....-.+.|. .-+.+
T Consensus 90 ~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~~iavlt-GHn---------------HYVMcAqFhpt-EDlIV 151 (1202)
T KOG0292|consen 90 LGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRKCIAVLT-GHN---------------HYVMCAQFHPT-EDLIV 151 (1202)
T ss_pred ccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCceEEEEe-cCc---------------eEEEeeccCCc-cceEE
Confidence 4556667777777422 222355667888888876655433321 100 11112222221 12333
Q ss_pred EeCCCCeEEEEEcCCCceEE-----------------------------EecCCCCCceEEEEeCCCCEEEEEeCCCCCC
Q psy13635 193 TDTGTDRIEVCRLEGTHRKV-----------------------------LVNTDLVEPRAITLSPAHGYLFWSDWNEKRP 243 (357)
Q Consensus 193 td~~~~~I~~~~~~g~~~~~-----------------------------~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~ 243 (357)
+-+-..+|.+-|..|-..+. ++.+.-...+-.|++|. --|+++-.....-
T Consensus 152 SaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpT-lpliVSG~DDRqV 230 (1202)
T KOG0292|consen 152 SASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPT-LPLIVSGADDRQV 230 (1202)
T ss_pred EecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCC-cceEEecCCccee
Confidence 44444455554444322111 11112223445666653 3455554443223
Q ss_pred eEEEEecCCCceEEE--eeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCC
Q psy13635 244 KIERSLLNGGERVLL--VKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDG 295 (357)
Q Consensus 244 ~I~~~~~dg~~~~~~--~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG 295 (357)
++||.+- +...++ .....++..++-++ ..+.|..+......|+..|++.
T Consensus 231 KlWrmne--tKaWEvDtcrgH~nnVssvlfh-p~q~lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 231 KLWRMNE--TKAWEVDTCRGHYNNVSSVLFH-PHQDLILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred eEEEecc--ccceeehhhhcccCCcceEEec-CccceeEecCCCccEEEEeccc
Confidence 5555543 222222 22345566788887 4566777777777777777654
|
|
| >smart00284 OLF Olfactomedin-like domains | Back alignment and domain information |
|---|
Probab=90.15 E-value=13 Score=33.06 Aligned_cols=147 Identities=14% Similarity=0.112 Sum_probs=79.9
Q ss_pred CCeEEEEeCCCCEEEEEEcCCCceE--EEEec-CCCCcceeeeeccCcccccCCceEEEeCCCC--eEEEEeCCCCeEEE
Q psy13635 128 TEKLYWTDSETNKLEVSSLDGKKRK--VLYWE-DIDQPRAIASYKLPTIEVEHPDGVAVDWVAR--NLYWTDTGTDRIEV 202 (357)
Q Consensus 128 ~~~ly~td~~~~~I~~~~~~g~~~~--~~~~~-~~~~p~~i~~~~~~~~~~~~p~glavD~~~~--~lY~td~~~~~I~~ 202 (357)
++.||+--..+..|.+.++...... ..++. +..+...- .-+...--++|+| .+| -||-+....+.|..
T Consensus 83 ngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y------~~~~~sdiDlAvD-E~GLWvIYat~~~~g~ivv 155 (255)
T smart00284 83 NGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPY------AWGGFSDIDLAVD-ENGLWVIYATEQNAGKIVI 155 (255)
T ss_pred CceEEEEecCCccEEEEECCCCcEEEEEecCcccccccccc------ccCCCccEEEEEc-CCceEEEEeccCCCCCEEE
Confidence 6899998888899999999877653 22211 11100000 0011223478999 344 23555666677776
Q ss_pred EEcCCCceEE--EecCCCCC---ceEEEEeCCCCEEEEEeCCCC-CCeEE-EEecCCCceEEEeeCCCCC----ceEEEE
Q psy13635 203 CRLEGTHRKV--LVNTDLVE---PRAITLSPAHGYLFWSDWNEK-RPKIE-RSLLNGGERVLLVKDRLGW----PNGITL 271 (357)
Q Consensus 203 ~~~~g~~~~~--~~~~~~~~---P~giavd~~~g~Ly~~d~~~~-~~~I~-~~~~dg~~~~~~~~~~l~~----P~giai 271 (357)
..+|-....+ .-.....+ -++.-++ |.||.++.... ..+|. ..+...+.. ....-.+.. -..|..
T Consensus 156 SkLnp~tL~ve~tW~T~~~k~sa~naFmvC---GvLY~~~s~~~~~~~I~yayDt~t~~~-~~~~i~f~n~y~~~s~l~Y 231 (255)
T smart00284 156 SKLNPATLTIENTWITTYNKRSASNAFMIC---GILYVTRSLGSKGEKVFYAYDTNTGKE-GHLDIPFENMYEYISMLDY 231 (255)
T ss_pred EeeCcccceEEEEEEcCCCcccccccEEEe---eEEEEEccCCCCCcEEEEEEECCCCcc-ceeeeeeccccccceecee
Confidence 6666443332 22222222 2455566 89999986321 23444 344443322 222222233 345888
Q ss_pred ecCCCEEEEEeCCC
Q psy13635 272 DVDNEKLYWCDAKT 285 (357)
Q Consensus 272 d~~~~~lY~~d~~~ 285 (357)
+|.+++||.=|.+.
T Consensus 232 NP~d~~LY~wdng~ 245 (255)
T smart00284 232 NPNDRKLYAWNNGH 245 (255)
T ss_pred CCCCCeEEEEeCCe
Confidence 89999999887543
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=90.09 E-value=0.78 Score=44.83 Aligned_cols=109 Identities=12% Similarity=0.077 Sum_probs=77.3
Q ss_pred EEEeecCCCCeEEEEEeCCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEE
Q psy13635 32 WYALSHHVAAQMLLFATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV 111 (357)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~ 111 (357)
..++.-++..|+|++++++.++.+|+....-...+.++......|++++.+++|+..... +++..++++=+. .....
T Consensus 569 vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d-~k~~WfDldlss--kPyk~ 645 (733)
T KOG0650|consen 569 VQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYD-KKMCWFDLDLSS--KPYKT 645 (733)
T ss_pred eeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCC-CeeEEEEcccCc--chhHH
Confidence 345556778899999999999999997754444456778888999999999999887654 567778887553 12333
Q ss_pred EeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEE
Q psy13635 112 ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVS 144 (357)
Q Consensus 112 ~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~ 144 (357)
+...-.....+|++. .=.||-+-+..+.+.++
T Consensus 646 lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 646 LRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVF 677 (733)
T ss_pred hhhhhhhhhhhhhcc-ccceeeeecCCCcEEEE
Confidence 333344567788883 55677777666666654
|
|
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=89.87 E-value=15 Score=37.38 Aligned_cols=138 Identities=7% Similarity=0.136 Sum_probs=92.5
Q ss_pred cEEEEEcCCC---CcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcC
Q psy13635 51 DIRIANLSRP---LKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 127 (357)
Q Consensus 51 ~i~~~~~~~~---~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~ 127 (357)
.|...|+... ......-+.-+...-++|+..+-.|.++...++.|...++.... ........-.+...+++.+.
T Consensus 111 ~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~---S~~t~~~nSESiRDV~fsp~ 187 (839)
T KOG0269|consen 111 VISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK---SKSTFRSNSESIRDVKFSPG 187 (839)
T ss_pred cEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc---ccccccccchhhhceeeccC
Confidence 4566676552 11122234566788999999999999999999999999987664 12333335567899999999
Q ss_pred CCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCC-eEEEEEcC
Q psy13635 128 TEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTD-RIEVCRLE 206 (357)
Q Consensus 128 ~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~-~I~~~~~~ 206 (357)
.++.|.+-.++|.++..++....+-..- -.-+.--.+.+||.-++-|.+..+.+ .|..=+++
T Consensus 188 ~~~~F~s~~dsG~lqlWDlRqp~r~~~k-----------------~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t 250 (839)
T KOG0269|consen 188 YGNKFASIHDSGYLQLWDLRQPDRCEKK-----------------LTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMT 250 (839)
T ss_pred CCceEEEecCCceEEEeeccCchhHHHH-----------------hhcccCceEEEeecCCCceeeecCCCccEEEEecc
Confidence 9999999999999999998654331110 00012235666766677777766654 55555666
Q ss_pred CC
Q psy13635 207 GT 208 (357)
Q Consensus 207 g~ 208 (357)
+.
T Consensus 251 ~~ 252 (839)
T KOG0269|consen 251 DS 252 (839)
T ss_pred CC
Confidence 43
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=89.65 E-value=25 Score=35.64 Aligned_cols=189 Identities=10% Similarity=0.040 Sum_probs=110.9
Q ss_pred EEeecCCCCeEEEEEeC-CcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCe---EEEEEcCCCCccee
Q psy13635 33 YALSHHVAAQMLLFATS-KDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEM---ISCCTFDGNNVGSK 108 (357)
Q Consensus 33 ~~~~~~~~~~~l~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~---I~~~~~~g~~~~~~ 108 (357)
|+..=+++..||+-.+. ..++.-.++.......-.......+.+.|.| .-.|++..+.++ ++..+-.- .
T Consensus 455 yg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P--~GyYFatas~D~tArLWs~d~~~-----P 527 (707)
T KOG0263|consen 455 YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP--RGYYFATASHDQTARLWSTDHNK-----P 527 (707)
T ss_pred eeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC--CceEEEecCCCceeeeeecccCC-----c
Confidence 45555666777776665 5677777765222222234455567788886 346666555443 33333322 2
Q ss_pred EEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCC
Q psy13635 109 HNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVAR 188 (357)
Q Consensus 109 ~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~ 188 (357)
..+....+.-...++|+|. .+.-.|.+...+++..+........++..-. .....+++.|.+.
T Consensus 528 lRifaghlsDV~cv~FHPN-s~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~----------------~~V~al~~Sp~Gr 590 (707)
T KOG0263|consen 528 LRIFAGHLSDVDCVSFHPN-SNYVATGSSDRTVRLWDVSTGNSVRIFTGHK----------------GPVTALAFSPCGR 590 (707)
T ss_pred hhhhcccccccceEEECCc-ccccccCCCCceEEEEEcCCCcEEEEecCCC----------------CceEEEEEcCCCc
Confidence 4556666777788999974 4444566777888888866555555553221 2345677776443
Q ss_pred eEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEe
Q psy13635 189 NLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSL 249 (357)
Q Consensus 189 ~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~ 249 (357)
-..+....+.|..-|+.+........+.-.....|.++.. |.+.++....+ .|..-+
T Consensus 591 -~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~d-g~vLasgg~Dn--sV~lWD 647 (707)
T KOG0263|consen 591 -YLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRD-GNVLASGGADN--SVRLWD 647 (707)
T ss_pred -eEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecC-CCEEEecCCCC--eEEEEE
Confidence 3334455568888887764432222233556788899864 77777776644 554444
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=89.26 E-value=16 Score=32.66 Aligned_cols=203 Identities=12% Similarity=0.069 Sum_probs=117.1
Q ss_pred CCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCc-CCceeEEEEcCCCeEEEEeCCCCEEEEE-EcC
Q psy13635 70 LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGL-ITPDGLAIDWLTEKLYWTDSETNKLEVS-SLD 147 (357)
Q Consensus 70 ~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~-~~p~glavd~~~~~ly~td~~~~~I~~~-~~~ 147 (357)
....+.++++|..|.|+-+-..+..|+..+..+.......+++..+- ...+.+|..|.++.|- +-+-..++... +.+
T Consensus 14 ~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La-~aSFD~t~~Iw~k~~ 92 (312)
T KOG0645|consen 14 KDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLA-SASFDATVVIWKKED 92 (312)
T ss_pred CCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEE-EeeccceEEEeecCC
Confidence 34688999999778888888888888888888643233344554433 5688999987666443 33333444333 334
Q ss_pred CCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEE--EEcCCCc-eEEEecCCCCCceEE
Q psy13635 148 GKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEV--CRLEGTH-RKVLVNTDLVEPRAI 224 (357)
Q Consensus 148 g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~--~~~~g~~-~~~~~~~~~~~P~gi 224 (357)
+.+.-+-..++-+ +...++|.. ..|++..+......+.. ++-+++. ...++.+..+....+
T Consensus 93 ~efecv~~lEGHE---------------nEVK~Vaws-~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V 156 (312)
T KOG0645|consen 93 GEFECVATLEGHE---------------NEVKCVAWS-ASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHV 156 (312)
T ss_pred CceeEEeeeeccc---------------cceeEEEEc-CCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEE
Confidence 4444333323322 356778887 45566666666555554 4433443 234455566778899
Q ss_pred EEeCCCCEEEEEeCCCCCCeEEEEecCCCce-EEEeeCCCCCceEEEEecCCCEEEEEeC-CCCeEEE
Q psy13635 225 TLSPAHGYLFWSDWNEKRPKIERSLLNGGER-VLLVKDRLGWPNGITLDVDNEKLYWCDA-KTDKIEM 290 (357)
Q Consensus 225 avd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~-~~~~~~~l~~P~giaid~~~~~lY~~d~-~~~~I~~ 290 (357)
..+|..+.|+-+...+. -++++-..++.-. ...+...-...-++++|+.+.+|--++. .+-+|++
T Consensus 157 ~WHPt~dlL~S~SYDnT-Ik~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 157 IWHPTEDLLFSCSYDNT-IKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred EEcCCcceeEEeccCCe-EEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeee
Confidence 99997666665554432 4555554433222 1222222235568888866667654443 3445555
|
|
| >smart00284 OLF Olfactomedin-like domains | Back alignment and domain information |
|---|
Probab=89.11 E-value=16 Score=32.55 Aligned_cols=140 Identities=13% Similarity=0.174 Sum_probs=78.9
Q ss_pred CCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeC-C----------cCCceeEEEEcCCCe--EEEEeCCCCEEEEEEcCC
Q psy13635 82 KSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN-G----------LITPDGLAIDWLTEK--LYWTDSETNKLEVSSLDG 148 (357)
Q Consensus 82 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~-~----------~~~p~glavd~~~~~--ly~td~~~~~I~~~~~~g 148 (357)
+|.||+.-..+..|.|.++...... .+..+.. + -.+-..+|+|. +|. ||-+..+.+.|....+|-
T Consensus 83 ngslYY~~~~s~~iiKydL~t~~v~-~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE-~GLWvIYat~~~~g~ivvSkLnp 160 (255)
T smart00284 83 NGSLYFNKFNSHDICRFDLTTETYQ-KEPLLNGAGYNNRFPYAWGGFSDIDLAVDE-NGLWVIYATEQNAGKIVISKLNP 160 (255)
T ss_pred CceEEEEecCCccEEEEECCCCcEE-EEEecCccccccccccccCCCccEEEEEcC-CceEEEEeccCCCCCEEEEeeCc
Confidence 6999998888889999999987521 1222221 1 11235788883 332 344456668888777765
Q ss_pred CceEE--EEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC---CCeEE-EEEcCCCceEEE-e--cCCCC
Q psy13635 149 KKRKV--LYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG---TDRIE-VCRLEGTHRKVL-V--NTDLV 219 (357)
Q Consensus 149 ~~~~~--~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~---~~~I~-~~~~~g~~~~~~-~--~~~~~ 219 (357)
...++ .......++.+ -+...+ =|.||+++.. ..+|. ..|..+.....+ + .....
T Consensus 161 ~tL~ve~tW~T~~~k~sa-------------~naFmv---CGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~f~n~y~ 224 (255)
T smart00284 161 ATLTIENTWITTYNKRSA-------------SNAFMI---CGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPFENMYE 224 (255)
T ss_pred ccceEEEEEEcCCCcccc-------------cccEEE---eeEEEEEccCCCCCcEEEEEEECCCCccceeeeeeccccc
Confidence 44433 33233222111 122222 3689999853 22443 455554332211 1 11223
Q ss_pred CceEEEEeCCCCEEEEEeCC
Q psy13635 220 EPRAITLSPAHGYLFWSDWN 239 (357)
Q Consensus 220 ~P~giavd~~~g~Ly~~d~~ 239 (357)
.-..|..+|.++.||.=|.+
T Consensus 225 ~~s~l~YNP~d~~LY~wdng 244 (255)
T smart00284 225 YISMLDYNPNDRKLYAWNNG 244 (255)
T ss_pred cceeceeCCCCCeEEEEeCC
Confidence 34458899999999998876
|
|
| >COG3211 PhoX Predicted phosphatase [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.79 E-value=5.5 Score=39.17 Aligned_cols=112 Identities=15% Similarity=0.153 Sum_probs=64.1
Q ss_pred cccccCCceEEEeCCCCeEEEEeCCCC----------------eEEEEEcCCC-------ceEEEecC------------
Q psy13635 172 TIEVEHPDGVAVDWVARNLYWTDTGTD----------------RIEVCRLEGT-------HRKVLVNT------------ 216 (357)
Q Consensus 172 ~~~~~~p~glavD~~~~~lY~td~~~~----------------~I~~~~~~g~-------~~~~~~~~------------ 216 (357)
...+..|+++++.+..+.+|++..++. .|.+.-+.+. .-..++..
T Consensus 413 AT~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~ 492 (616)
T COG3211 413 ATPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASA 492 (616)
T ss_pred CccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCcccccccccc
Confidence 456679999999999999999976543 4666554432 11111110
Q ss_pred -----CCCCceEEEEeCCCCEEEEEeCCCC---CC---eEEEEecCCCce---EEEeeC-CCCCceEEEEecCCCEEEEE
Q psy13635 217 -----DLVEPRAITLSPAHGYLFWSDWNEK---RP---KIERSLLNGGER---VLLVKD-RLGWPNGITLDVDNEKLYWC 281 (357)
Q Consensus 217 -----~~~~P~giavd~~~g~Ly~~d~~~~---~~---~I~~~~~dg~~~---~~~~~~-~l~~P~giaid~~~~~lY~~ 281 (357)
.+..|.+|++|+. |+|+++.-+.. .. .+..+...+... ...+.. .-..-.|.++.++...+|+.
T Consensus 493 ~~~~~~f~~PDnl~fD~~-GrLWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~ 571 (616)
T COG3211 493 NINANWFNSPDNLAFDPW-GRLWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVN 571 (616)
T ss_pred CcccccccCCCceEECCC-CCEEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEE
Confidence 1445999999986 89988875533 11 111111111111 111111 11344577887777777776
Q ss_pred eCC
Q psy13635 282 DAK 284 (357)
Q Consensus 282 d~~ 284 (357)
-+.
T Consensus 572 vQH 574 (616)
T COG3211 572 VQH 574 (616)
T ss_pred ecC
Confidence 543
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=88.51 E-value=22 Score=33.43 Aligned_cols=162 Identities=14% Similarity=0.201 Sum_probs=88.6
Q ss_pred CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCC
Q psy13635 49 SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 128 (357)
Q Consensus 49 ~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~ 128 (357)
.+.|..-++.++ ...+..........+.|.. +|.++.+-..+.+|+.++......+ .+.....|...+..+-+- +
T Consensus 153 Dn~v~iWnv~tg-eali~l~hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v-~e~~~heG~k~~Raifl~--~ 227 (472)
T KOG0303|consen 153 DNTVSIWNVGTG-EALITLDHPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVV-SEGVAHEGAKPARAIFLA--S 227 (472)
T ss_pred CceEEEEeccCC-ceeeecCCCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEe-eecccccCCCcceeEEec--c
Confidence 455777777653 3334444666788999987 5667778888889998888765422 112344555555544443 3
Q ss_pred CeEEEEeCCCCEEEEEEcCCCceEEEE--ecCCCCcceeeeeccCcccccCCceEEE---eCCCCeEEEEeCCCCeEEEE
Q psy13635 129 EKLYWTDSETNKLEVSSLDGKKRKVLY--WEDIDQPRAIASYKLPTIEVEHPDGVAV---DWVARNLYWTDTGTDRIEVC 203 (357)
Q Consensus 129 ~~ly~td~~~~~I~~~~~~g~~~~~~~--~~~~~~p~~i~~~~~~~~~~~~p~glav---D~~~~~lY~td~~~~~I~~~ 203 (357)
+.++-|-...- +.++..+ ...+.+|-+ ...+..-+|+-+ |+.++.||.+..+.+.|.-+
T Consensus 228 g~i~tTGfsr~---------seRq~aLwdp~nl~eP~~-------~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYy 291 (472)
T KOG0303|consen 228 GKIFTTGFSRM---------SERQIALWDPNNLEEPIA-------LQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYF 291 (472)
T ss_pred Cceeeeccccc---------cccceeccCcccccCcce-------eEEeccCCceEEeeecCCCCEEEEEecCCcceEEE
Confidence 44444332211 1111111 122333311 123344555543 88899999999998888877
Q ss_pred EcCCCc--eEEEecC-CCCCceEEEEeCCCC
Q psy13635 204 RLEGTH--RKVLVNT-DLVEPRAITLSPAHG 231 (357)
Q Consensus 204 ~~~g~~--~~~~~~~-~~~~P~giavd~~~g 231 (357)
...... ...+-.- ..+--+|+++-|.+|
T Consensus 292 Eit~d~P~~hyln~f~S~epQRG~g~mPKRG 322 (472)
T KOG0303|consen 292 EITNEPPFVHYLNTFSSKEPQRGMGFMPKRG 322 (472)
T ss_pred EecCCCceeEEecccccCCcccccccccccc
Confidence 665544 2222211 122235777776544
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=88.35 E-value=26 Score=34.06 Aligned_cols=164 Identities=13% Similarity=0.088 Sum_probs=90.9
Q ss_pred cccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecC
Q psy13635 172 TIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLN 251 (357)
Q Consensus 172 ~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~d 251 (357)
++++..|.-++= ..+-||+-... +.|..=++.+....++.. ....-.|+|..|. ..+|.|......-+++. +
T Consensus 326 Pe~~G~iRtv~e--~~~di~vGTtr-N~iL~Gt~~~~f~~~v~g-h~delwgla~hps-~~q~~T~gqdk~v~lW~---~ 397 (626)
T KOG2106|consen 326 PEQFGPIRTVAE--GKGDILVGTTR-NFILQGTLENGFTLTVQG-HGDELWGLATHPS-KNQLLTCGQDKHVRLWN---D 397 (626)
T ss_pred chhcCCeeEEec--CCCcEEEeecc-ceEEEeeecCCceEEEEe-cccceeeEEcCCC-hhheeeccCcceEEEcc---C
Confidence 445555555443 34457765554 567666666554433332 2347889999986 56666665432123333 1
Q ss_pred CCceE-EEeeCC----CCCce-EEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEECCEE--EEEe
Q psy13635 252 GGERV-LLVKDR----LGWPN-GITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYV--YWTD 323 (357)
Q Consensus 252 g~~~~-~~~~~~----l~~P~-giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~~~~l--y~td 323 (357)
-.-.. .++... --.|. -+|+...+|+.++-|..+.....+..++.....+-...-..-.++.-.++.| |-.+
T Consensus 398 ~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 398 HKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVS 477 (626)
T ss_pred CceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEEC
Confidence 11111 111110 12343 3556667888888888887777777776655554443333334444445655 4566
Q ss_pred CCCCeEEEEeCccCceeEEE
Q psy13635 324 WQRRSIDRVNKITGNDREVI 343 (357)
Q Consensus 324 ~~~~~I~~~~~~~g~~~~~i 343 (357)
...+...++.+.+|+..+.+
T Consensus 478 ~~g~~y~r~~k~~gs~ithL 497 (626)
T KOG2106|consen 478 ANGRKYSRVGKCSGSPITHL 497 (626)
T ss_pred CCCcEEEEeeeecCceeEEe
Confidence 66666778888778655543
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=88.16 E-value=24 Score=33.53 Aligned_cols=203 Identities=9% Similarity=0.079 Sum_probs=117.0
Q ss_pred CcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCC--cCCceeEEEEcCCCeEEEEeCCC
Q psy13635 61 LKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNG--LITPDGLAIDWLTEKLYWTDSET 138 (357)
Q Consensus 61 ~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~--~~~p~glavd~~~~~ly~td~~~ 138 (357)
.........-....++..++.++.+.|++....-.+.---+|.. ..+.... -..-...+++| .+.||-+-..+
T Consensus 294 s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~----lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d 368 (506)
T KOG0289|consen 294 SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ----LTVVSDETSDVEYTSAAFHP-DGLIFGTGTPD 368 (506)
T ss_pred cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcE----EEEEeeccccceeEEeeEcC-CceEEeccCCC
Confidence 34444445555678899999999999987765444443344442 3333332 12356788885 78999999989
Q ss_pred CEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCC-CceEEEecCC
Q psy13635 139 NKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEG-THRKVLVNTD 217 (357)
Q Consensus 139 ~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g-~~~~~~~~~~ 217 (357)
+.+...++.......-++. --.....|++. .+|+-.++....+.|..-|+.- ++...+....
T Consensus 369 ~~vkiwdlks~~~~a~Fpg----------------ht~~vk~i~Fs-ENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~ 431 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPG----------------HTGPVKAISFS-ENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE 431 (506)
T ss_pred ceEEEEEcCCccccccCCC----------------CCCceeEEEec-cCceEEEEEecCCeEEEEEehhhcccceeeccc
Confidence 9999888865542221111 11234567776 5666666666666677777663 2333443334
Q ss_pred CCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEee--CCCCCceEEEEecCCCEEEEEeCCCCeEEE
Q psy13635 218 LVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVK--DRLGWPNGITLDVDNEKLYWCDAKTDKIEM 290 (357)
Q Consensus 218 ~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~--~~l~~P~giaid~~~~~lY~~d~~~~~I~~ 290 (357)
......+.+|..+.+|-.. +.. -+|+.+.....+=+.+.. ......+|+.+. +..-|.++...+++.+
T Consensus 432 ~~~v~s~~fD~SGt~L~~~--g~~-l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg--~~aq~l~s~smd~~l~ 501 (506)
T KOG0289|consen 432 KKEVNSLSFDQSGTYLGIA--GSD-LQVYICKKKTKSWTEIKELADHSGLSTGVRFG--EHAQYLASTSMDAILR 501 (506)
T ss_pred cccceeEEEcCCCCeEEee--cce-eEEEEEecccccceeeehhhhcccccceeeec--ccceEEeeccchhheE
Confidence 4467889999765555444 321 355555533322222221 222345677763 5556777766665543
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=88.16 E-value=32 Score=34.91 Aligned_cols=236 Identities=9% Similarity=-0.003 Sum_probs=125.9
Q ss_pred CCCCeEEEEEeCCcEEEEEcCCCCc-ceE-eccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCC
Q psy13635 38 HVAAQMLLFATSKDIRIANLSRPLK-PVT-IIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNG 115 (357)
Q Consensus 38 ~~~~~~l~~~~~~~i~~~~~~~~~~-~~~-~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 115 (357)
+....+|+.+..+.|-.+|+..+.. ... ..+......++++++++..||.+-. +..+...++..+........+..
T Consensus 28 s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~r-s~llrv~~L~tgk~irswKa~He- 105 (775)
T KOG0319|consen 28 SSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASR-SQLLRVWSLPTGKLIRSWKAIHE- 105 (775)
T ss_pred CCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeec-cceEEEEEcccchHhHhHhhccC-
Confidence 4445567777777788899876432 111 1234456788999998888776643 45666667765532111112122
Q ss_pred cCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCC-eEEEEe
Q psy13635 116 LITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVAR-NLYWTD 194 (357)
Q Consensus 116 ~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~-~lY~td 194 (357)
.-...+++|+ ++.|.-+-...+++.+.++.+.+...-+.. . |. -...+.+.+.-. .+..+.
T Consensus 106 -~Pvi~ma~~~-~g~LlAtggaD~~v~VWdi~~~~~th~fkG-~--gG-------------vVssl~F~~~~~~~lL~sg 167 (775)
T KOG0319|consen 106 -APVITMAFDP-TGTLLATGGADGRVKVWDIKNGYCTHSFKG-H--GG-------------VVSSLLFHPHWNRWLLASG 167 (775)
T ss_pred -CCeEEEEEcC-CCceEEeccccceEEEEEeeCCEEEEEecC-C--Cc-------------eEEEEEeCCccchhheeec
Confidence 2236789997 457777777889999999998877554321 1 10 112233322221 333455
Q ss_pred CCCCeEEEEEcCCCce-EEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEec
Q psy13635 195 TGTDRIEVCRLEGTHR-KVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDV 273 (357)
Q Consensus 195 ~~~~~I~~~~~~g~~~-~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~ 273 (357)
...+.+...++..... -...........+|++.+....+.-.-.. ..|..-++..-....++. -...-.+.++-.
T Consensus 168 ~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RD---kvi~vwd~~~~~~l~~lp-~ye~~E~vv~l~ 243 (775)
T KOG0319|consen 168 ATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRD---KVIIVWDLVQYKKLKTLP-LYESLESVVRLR 243 (775)
T ss_pred CCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccC---cEEEEeehhhhhhhheec-hhhheeeEEEec
Confidence 5556788888773322 11222345677889988764334333322 244444442111111111 011112222211
Q ss_pred C--C--CEEEEEeCCCCeEEEEeCCCCC
Q psy13635 274 D--N--EKLYWCDAKTDKIEMIDFDGNN 297 (357)
Q Consensus 274 ~--~--~~lY~~d~~~~~I~~~~~dG~~ 297 (357)
. + +..+.+-.+.+.+...+..|..
T Consensus 244 ~~~~~~~~~~~TaG~~g~~~~~d~es~~ 271 (775)
T KOG0319|consen 244 EELGGKGEYIITAGGSGVVQYWDSESGK 271 (775)
T ss_pred hhcCCcceEEEEecCCceEEEEecccch
Confidence 1 1 3456666677788888876653
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=87.97 E-value=24 Score=33.21 Aligned_cols=103 Identities=9% Similarity=0.013 Sum_probs=57.1
Q ss_pred CCeEEEEeCCCCeEEEEEc-CCCceEEEecCC-CCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecC-CCceEEEeeC--
Q psy13635 187 ARNLYWTDTGTDRIEVCRL-EGTHRKVLVNTD-LVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLN-GGERVLLVKD-- 261 (357)
Q Consensus 187 ~~~lY~td~~~~~I~~~~~-~g~~~~~~~~~~-~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~d-g~~~~~~~~~-- 261 (357)
.|+||+.+... .++..+. +|...-...... ........+ .++.+|+.... +++..++.+ |......-..
T Consensus 111 ~G~i~~g~~~g-~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~--~~~~v~~~s~~---g~~~al~~~tG~~~W~~~~~~~ 184 (370)
T COG1520 111 DGKIYVGSWDG-KLYALDASTGTLVWSRNVGGSPYYASPPVV--GDGTVYVGTDD---GHLYALNADTGTLKWTYETPAP 184 (370)
T ss_pred CCeEEEecccc-eEEEEECCCCcEEEEEecCCCeEEecCcEE--cCcEEEEecCC---CeEEEEEccCCcEEEEEecCCc
Confidence 67899888764 7888888 676543332222 011111222 25778877522 478888877 5544332111
Q ss_pred -CCCCceEEEEecCCCEEEEEeCC-CCeEEEEeC-CCCC
Q psy13635 262 -RLGWPNGITLDVDNEKLYWCDAK-TDKIEMIDF-DGNN 297 (357)
Q Consensus 262 -~l~~P~giaid~~~~~lY~~d~~-~~~I~~~~~-dG~~ 297 (357)
........++ .++.+|+.... ...++..+. +|+.
T Consensus 185 ~~~~~~~~~~~--~~~~vy~~~~~~~~~~~a~~~~~G~~ 221 (370)
T COG1520 185 LSLSIYGSPAI--ASGTVYVGSDGYDGILYALNAEDGTL 221 (370)
T ss_pred cccccccCcee--ecceEEEecCCCcceEEEEEccCCcE
Confidence 2222222223 57888888664 446777777 5653
|
|
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=87.64 E-value=33 Score=34.53 Aligned_cols=196 Identities=14% Similarity=0.118 Sum_probs=112.3
Q ss_pred ceeEEEEcCCCeEEEEeCCC------CEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEE
Q psy13635 119 PDGLAIDWLTEKLYWTDSET------NKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYW 192 (357)
Q Consensus 119 p~glavd~~~~~ly~td~~~------~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~ 192 (357)
-.|+++- ++.||++-..+ +.+.++++....=..+ ..+..+| .+.++-..+|.||+
T Consensus 325 ~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~--a~M~~~R---------------~~~~v~~l~g~iYa 385 (571)
T KOG4441|consen 325 RVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV--APMNTKR---------------SDFGVAVLDGKLYA 385 (571)
T ss_pred cccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceecc--CCccCcc---------------ccceeEEECCEEEE
Confidence 3455554 78999987544 4677777665431111 1122222 12333346899998
Q ss_pred EeCCCC-----eEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCC----CCeEEEEecCCCceEEEeeCCC
Q psy13635 193 TDTGTD-----RIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEK----RPKIERSLLNGGERVLLVKDRL 263 (357)
Q Consensus 193 td~~~~-----~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~----~~~I~~~~~dg~~~~~~~~~~l 263 (357)
.....+ .+++.++....=..+..-. ..-.+.++-..+|+||.+-.... ...+++.++....=+.+ ..+
T Consensus 386 vGG~dg~~~l~svE~YDp~~~~W~~va~m~-~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~--~~M 462 (571)
T KOG4441|consen 386 VGGFDGEKSLNSVECYDPVTNKWTPVAPML-TRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI--APM 462 (571)
T ss_pred EeccccccccccEEEecCCCCcccccCCCC-cceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeec--CCc
Confidence 866543 6899988876544443211 12334444445799999965322 24677777764433222 122
Q ss_pred CCc---eEEEEecCCCEEEEEeCCC-----CeEEEEeCCCCCeEEEecC-CCCceEEEEEECCEEEEEeCCC-----CeE
Q psy13635 264 GWP---NGITLDVDNEKLYWCDAKT-----DKIEMIDFDGNNRRELINE-NLPHVFGISLLGDYVYWTDWQR-----RSI 329 (357)
Q Consensus 264 ~~P---~giaid~~~~~lY~~d~~~-----~~I~~~~~dG~~~~~i~~~-~~~~p~gia~~~~~ly~td~~~-----~~I 329 (357)
..+ .|+++ .+++||+.-... ..|.++++....-..+..- .-....|+++.++.+|+.--.. +.|
T Consensus 463 ~~~R~~~g~a~--~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~v 540 (571)
T KOG4441|consen 463 NTRRSGFGVAV--LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTV 540 (571)
T ss_pred ccccccceEEE--ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCcccccee
Confidence 222 45665 689999875422 3488888887765544221 1223467888999999976422 445
Q ss_pred EEEeCccCc
Q psy13635 330 DRVNKITGN 338 (357)
Q Consensus 330 ~~~~~~~g~ 338 (357)
...++.+++
T Consensus 541 e~ydp~~d~ 549 (571)
T KOG4441|consen 541 ECYDPETDT 549 (571)
T ss_pred EEcCCCCCc
Confidence 566654433
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=87.36 E-value=28 Score=33.32 Aligned_cols=201 Identities=11% Similarity=0.102 Sum_probs=106.4
Q ss_pred CcCCceeEEEEcCCC-eEEEEeCCCCEEEEEEcCCCc--e-EEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeE
Q psy13635 115 GLITPDGLAIDWLTE-KLYWTDSETNKLEVSSLDGKK--R-KVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNL 190 (357)
Q Consensus 115 ~~~~p~glavd~~~~-~ly~td~~~~~I~~~~~~g~~--~-~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~l 190 (357)
--.....+++.|... ++..+-.-.|+|...++++.. . .+.....-. ....+|.+-|.+-.-
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs---------------~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHS---------------GPVSGLKFSPANTSQ 249 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCC---------------ccccceEecCCChhh
Confidence 334667889998777 666666667899999986322 1 222111100 023344444433333
Q ss_pred EEEeCCCCeEEEEEcCCCceEEEecC--CCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceE
Q psy13635 191 YWTDTGTDRIEVCRLEGTHRKVLVNT--DLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNG 268 (357)
Q Consensus 191 Y~td~~~~~I~~~~~~g~~~~~~~~~--~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~g 268 (357)
+.+-...+.|...++.+...+.+... .-..-.++.+...++.+|+.+.-+ +..+.-.+.+|+....+.... ....+
T Consensus 250 i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G-~f~~iD~R~~~s~~~~~~lh~-kKI~s 327 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG-NFNVIDLRTDGSEYENLRLHK-KKITS 327 (498)
T ss_pred eeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeeccc-ceEEEEeecCCccchhhhhhh-cccce
Confidence 33334445555555554443333332 222345566666677777777654 256766777777554443222 26788
Q ss_pred EEEecCCCEEEEEeCCCCeEEEEeCC--CCCeEEEecCCCC--ceEEEEEE---CCEEEEEeCCCCeEEEEeC
Q psy13635 269 ITLDVDNEKLYWCDAKTDKIEMIDFD--GNNRRELINENLP--HVFGISLL---GDYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 269 iaid~~~~~lY~~d~~~~~I~~~~~d--G~~~~~i~~~~~~--~p~gia~~---~~~ly~td~~~~~I~~~~~ 334 (357)
+++.|....++.+-.-.+.....|+. +.....++. .+. ++..-|.+ +|.|.-|+ ..+.|+.++.
T Consensus 328 v~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~ls-t~~HrrsV~sAyFSPs~gtl~TT~-~D~~IRv~ds 398 (498)
T KOG4328|consen 328 VALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLS-TLPHRRSVNSAYFSPSGGTLLTTC-QDNEIRVFDS 398 (498)
T ss_pred eecCCCCchheeecccCcceeeeehhhhcCCCCccee-cccccceeeeeEEcCCCCceEeec-cCCceEEeec
Confidence 99988777777666544444344432 222211332 233 34443444 47755554 4467777765
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=87.28 E-value=25 Score=32.71 Aligned_cols=233 Identities=14% Similarity=0.074 Sum_probs=124.4
Q ss_pred EEccCCEEEEEeCCCCeEEEE-EcCCCCcceeEEEE-eCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEE
Q psy13635 78 YYYKKSMVCWTDHGTEMISCC-TFDGNNVGSKHNVI-TNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLY 155 (357)
Q Consensus 78 ~d~~~~~ly~~d~~~~~I~~~-~~~g~~~~~~~~~~-~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~ 155 (357)
+....+-.+|++......-|. .+-++. .-.++ ..+-.-...++....+..+--+..++..|...+.+......+.
T Consensus 158 vgCr~gIciW~~s~tln~~r~~~~~s~~---~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~ 234 (445)
T KOG2139|consen 158 VGCRAGICIWSDSRTLNANRNIRMMSTH---HLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI 234 (445)
T ss_pred eeecceeEEEEcCccccccccccccccc---chhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc
Confidence 334456667776654332221 111221 12222 2333345667777554444444556777888787765544443
Q ss_pred ecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCC-eEEEEEcC-CCceEEEecCCCCCceEEEEeCCCCEE
Q psy13635 156 WEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTD-RIEVCRLE-GTHRKVLVNTDLVEPRAITLSPAHGYL 233 (357)
Q Consensus 156 ~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~-~I~~~~~~-g~~~~~~~~~~~~~P~giavd~~~g~L 233 (357)
..+ +.+..-|-..|.+..||.+..... ++...+.. .+.+-++.. ....+-.-+|.+.+|
T Consensus 235 ~~g----------------lgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgs---grvqtacWspcGsfL 295 (445)
T KOG2139|consen 235 PKG----------------LGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGS---GRVQTACWSPCGSFL 295 (445)
T ss_pred ccC----------------CCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccC---CceeeeeecCCCCEE
Confidence 222 122223445555666665543221 22211111 122222222 144555667887888
Q ss_pred EEEeCCCCCCeEEEEecCCCceE----------EEeeC--------C----CCCceEEEEecCCCEEEEEeCCCCeEEEE
Q psy13635 234 FWSDWNEKRPKIERSLLNGGERV----------LLVKD--------R----LGWPNGITLDVDNEKLYWCDAKTDKIEMI 291 (357)
Q Consensus 234 y~~d~~~~~~~I~~~~~dg~~~~----------~~~~~--------~----l~~P~giaid~~~~~lY~~d~~~~~I~~~ 291 (357)
.++-.+. ..+++...++.... .++.+ + -..+..||.|+.+.+|-++-.+...|..+
T Consensus 296 Lf~~sgs--p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~ 373 (445)
T KOG2139|consen 296 LFACSGS--PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLC 373 (445)
T ss_pred EEEEcCC--ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhh
Confidence 8888885 59999988764221 11111 1 24578999999999998887666544333
Q ss_pred -------eCCCCCeEEEec---CCCCceEEEEEE----CCEEEEEeCCCCeEEEEeC
Q psy13635 292 -------DFDGNNRRELIN---ENLPHVFGISLL----GDYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 292 -------~~dG~~~~~i~~---~~~~~p~gia~~----~~~ly~td~~~~~I~~~~~ 334 (357)
+..-+...++.. .+..+|.-|++. ++.+...-|.+|++.++..
T Consensus 374 k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 374 KLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred hhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 222222222221 134567777763 5778888888899887765
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=87.23 E-value=39 Score=34.88 Aligned_cols=121 Identities=10% Similarity=0.077 Sum_probs=71.0
Q ss_pred EEEEeceeEEEEEEEEEEEEEeecCCCCeEE---EEEe-CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEe
Q psy13635 14 MFITNTKWVNYIFLVVHFWYALSHHVAAQML---LFAT-SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTD 89 (357)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d 89 (357)
|.+.|=++-+.|.-+-.++..++...+.|.| .+.. ..+|...++-..+.....-.+-+....+.|..++..+..+.
T Consensus 184 lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~ 263 (910)
T KOG1539|consen 184 LQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASG 263 (910)
T ss_pred EEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEec
Confidence 4466666666666665555555555555533 2222 44677777755444444444457788899988788888887
Q ss_pred CCCCeEEEEEcCCCCcceeEEEEe-CCcCCceeEEEEcCCCeEEEEeCCC
Q psy13635 90 HGTEMISCCTFDGNNVGSKHNVIT-NGLITPDGLAIDWLTEKLYWTDSET 138 (357)
Q Consensus 90 ~~~~~I~~~~~~g~~~~~~~~~~~-~~~~~p~glavd~~~~~ly~td~~~ 138 (357)
...|.+.-.++++... ..++. ....++.+..+-+ +.-+.++....
T Consensus 264 ~~~G~m~~wDLe~kkl---~~v~~nah~~sv~~~~fl~-~epVl~ta~~D 309 (910)
T KOG1539|consen 264 RSNGDMAFWDLEKKKL---INVTRNAHYGSVTGATFLP-GEPVLVTAGAD 309 (910)
T ss_pred cCCceEEEEEcCCCee---eeeeeccccCCcccceecC-CCceEeeccCC
Confidence 7778888888887741 22222 2234555655543 44454544433
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=87.19 E-value=23 Score=32.26 Aligned_cols=146 Identities=12% Similarity=0.076 Sum_probs=86.7
Q ss_pred CeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEE-EeCCCCEEEEEeCCCCCCeEEEEecCCCce--EEEeeCCCC
Q psy13635 188 RNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAIT-LSPAHGYLFWSDWNEKRPKIERSLLNGGER--VLLVKDRLG 264 (357)
Q Consensus 188 ~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~gia-vd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~--~~~~~~~l~ 264 (357)
++|-+... ++|++..........-.-+...+|.|+. ++|....-+.+-.+.+.++|...++..... ..++.....
T Consensus 105 ~riVvvl~--~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s 182 (346)
T KOG2111|consen 105 DRIVVVLE--NKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDS 182 (346)
T ss_pred CeEEEEec--CeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccC
Confidence 34444443 3555555443222222223456688764 566666777777665568899888876655 355555556
Q ss_pred CceEEEEecCCCEEEEEeCCCCeEEEE-e-CCCCCeEEEecC-CCCceEEEEEECCE-EEEEeCCCCeEEEEeCcc
Q psy13635 265 WPNGITLDVDNEKLYWCDAKTDKIEMI-D-FDGNNRRELINE-NLPHVFGISLLGDY-VYWTDWQRRSIDRVNKIT 336 (357)
Q Consensus 265 ~P~giaid~~~~~lY~~d~~~~~I~~~-~-~dG~~~~~i~~~-~~~~p~gia~~~~~-ly~td~~~~~I~~~~~~~ 336 (357)
.-..+++. ..|.+.-+-+..|.+.|+ + .+|+...++--+ +-.+.+.|++..+. ...+.+..|+|..+...+
T Consensus 183 ~Iacv~Ln-~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 183 DIACVALN-LQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred ceeEEEEc-CCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 66788887 567777777777766555 4 366666555321 12245677776433 333445678888877643
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=87.09 E-value=41 Score=35.02 Aligned_cols=198 Identities=11% Similarity=0.087 Sum_probs=115.2
Q ss_pred EEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceE
Q psy13635 73 GAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRK 152 (357)
Q Consensus 73 ~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~ 152 (357)
-..|.||+.++.|+..+. ++.|+....+... +....+...-....+++.+ + +.|.+.+..+.|.++..+.....
T Consensus 16 ~t~i~~d~~gefi~tcgs-dg~ir~~~~~sd~--e~P~ti~~~g~~v~~ia~~--s-~~f~~~s~~~tv~~y~fps~~~~ 89 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGS-DGDIRKWKTNSDE--EEPETIDISGELVSSIACY--S-NHFLTGSEQNTVLRYKFPSGEED 89 (933)
T ss_pred eEEEEEcCCCCEEEEecC-CCceEEeecCCcc--cCCchhhccCceeEEEeec--c-cceEEeeccceEEEeeCCCCCcc
Confidence 567889988887776654 3556665554441 1122222122334566665 2 36667777889999988765544
Q ss_pred EEEecCCCCcceeeeeccCccccc-CCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCC
Q psy13635 153 VLYWEDIDQPRAIASYKLPTIEVE-HPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHG 231 (357)
Q Consensus 153 ~~~~~~~~~p~~i~~~~~~~~~~~-~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g 231 (357)
.++. .|. ..+.++|+ .+|....+....-.|-..+++....+....+.-....+|.++|.+.
T Consensus 90 ~iL~-----------------Rftlp~r~~~v~-g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~ 151 (933)
T KOG1274|consen 90 TILA-----------------RFTLPIRDLAVS-GSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGN 151 (933)
T ss_pred ceee-----------------eeeccceEEEEe-cCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCC
Confidence 3321 111 34677888 5556655555555777777776555444443444557899999876
Q ss_pred EEEEEeCCCCCCeEEEEecCCCceEEEeeC-------CCCCc-eEEEEecCCCEEEEEeCCCCeEEEEeCCCCCe
Q psy13635 232 YLFWSDWNEKRPKIERSLLNGGERVLLVKD-------RLGWP-NGITLDVDNEKLYWCDAKTDKIEMIDFDGNNR 298 (357)
Q Consensus 232 ~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~-------~l~~P-~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~ 298 (357)
.|-++... +.+...+++.......+.. ....+ .-++..|.+|.+-+.-. .+.|..++.+|-..
T Consensus 152 fLAvss~d---G~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~-d~~Vkvy~r~~we~ 222 (933)
T KOG1274|consen 152 FLAVSSCD---GKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV-DNTVKVYSRKGWEL 222 (933)
T ss_pred EEEEEecC---ceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc-CCeEEEEccCCcee
Confidence 67666655 5788777764322221110 11222 33566667677665543 46788888776443
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=87.01 E-value=35 Score=34.04 Aligned_cols=63 Identities=13% Similarity=0.140 Sum_probs=34.8
Q ss_pred CCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeC---CcC-------CceeEEEEcCCCeEEEEeCCCCEEEEEEcC-CCc
Q psy13635 82 KSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN---GLI-------TPDGLAIDWLTEKLYWTDSETNKLEVSSLD-GKK 150 (357)
Q Consensus 82 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~---~~~-------~p~glavd~~~~~ly~td~~~~~I~~~~~~-g~~ 150 (357)
++.||+++.. +.|+.++..... ...+.-.. ... ...++++. +++||+... .+++..++.. |+.
T Consensus 69 ~g~vyv~s~~-g~v~AlDa~TGk--~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~-dg~l~ALDa~TGk~ 142 (527)
T TIGR03075 69 DGVMYVTTSY-SRVYALDAKTGK--ELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTL-DARLVALDAKTGKV 142 (527)
T ss_pred CCEEEEECCC-CcEEEEECCCCc--eeeEecCCCCcccccccccccccccceEE--CCEEEEEcC-CCEEEEEECCCCCE
Confidence 6788887654 467777766442 11111110 010 12456776 678888764 4678887764 443
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=86.62 E-value=31 Score=33.15 Aligned_cols=205 Identities=8% Similarity=0.039 Sum_probs=116.0
Q ss_pred cEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCe
Q psy13635 51 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 130 (357)
Q Consensus 51 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ 130 (357)
.++.+|...-.-....-+.....+-+-|.+.++.++.+...+..+...++++.. .+..+...-......++.+.++.
T Consensus 91 ~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~---v~~~l~~htDYVR~g~~~~~~~h 167 (487)
T KOG0310|consen 91 HVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY---VQAELSGHTDYVRCGDISPANDH 167 (487)
T ss_pred cEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE---EEEEecCCcceeEeeccccCCCe
Confidence 477788422011222223444566778888889999887777777777887764 23334444456788899999999
Q ss_pred EEEEeCCCCEEEEEEcCCCceEEE-EecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcC-CC
Q psy13635 131 LYWTDSETNKLEVSSLDGKKRKVL-YWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLE-GT 208 (357)
Q Consensus 131 ly~td~~~~~I~~~~~~g~~~~~~-~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~-g~ 208 (357)
+.+|-+-.+.|...++......+. +..+ .|-.-.+--..|.++.+..+ +.|.+-|+- |.
T Consensus 168 ivvtGsYDg~vrl~DtR~~~~~v~elnhg------------------~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~ 228 (487)
T KOG0310|consen 168 IVVTGSYDGKVRLWDTRSLTSRVVELNHG------------------CPVESVLALPSGSLIASAGG-NSVKVWDLTTGG 228 (487)
T ss_pred EEEecCCCceEEEEEeccCCceeEEecCC------------------CceeeEEEcCCCCEEEEcCC-CeEEEEEecCCc
Confidence 999999999999888765532222 1111 11111111123455544443 567777776 33
Q ss_pred ceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCc-eEEEEecCCCEEEEEe
Q psy13635 209 HRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWP-NGITLDVDNEKLYWCD 282 (357)
Q Consensus 209 ~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P-~giaid~~~~~lY~~d 282 (357)
.........-+....+.+...+.+|+-+--. +++..++. ++..++..-....| -.+++.+.+..+++--
T Consensus 229 qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD---~~VKVfd~--t~~Kvv~s~~~~~pvLsiavs~dd~t~viGm 298 (487)
T KOG0310|consen 229 QLLTSMFNHNKTVTCLRLASDSTRLLSGSLD---RHVKVFDT--TNYKVVHSWKYPGPVLSIAVSPDDQTVVIGM 298 (487)
T ss_pred eehhhhhcccceEEEEEeecCCceEeecccc---cceEEEEc--cceEEEEeeecccceeeEEecCCCceEEEec
Confidence 2222222233456677777655566655444 24444442 23344433334444 4678876666666544
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=86.54 E-value=38 Score=34.05 Aligned_cols=206 Identities=10% Similarity=0.020 Sum_probs=108.9
Q ss_pred cCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCc--eEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEE
Q psy13635 116 LITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKK--RKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWT 193 (357)
Q Consensus 116 ~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~--~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~t 193 (357)
-.....+++.+..+.+..+-+..+.|...++.... ...+ ..|... + ..--.....+++.|.+..++.+
T Consensus 74 ~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i-----~~p~~~-L----~gH~~~V~sVaf~P~g~~iLaS 143 (568)
T PTZ00420 74 TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEI-----KDPQCI-L----KGHKKKISIIDWNPMNYYIMCS 143 (568)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccc-----ccceEE-e----ecCCCcEEEEEECCCCCeEEEE
Confidence 34577888887666777888888999988875321 1100 000000 0 0111245678888877777777
Q ss_pred eCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceE--EEE
Q psy13635 194 DTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNG--ITL 271 (357)
Q Consensus 194 d~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~g--iai 271 (357)
-...+.|...++........+. .......+++++. |.++.+.... +.|...++.......-+...-..... +.+
T Consensus 144 gS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswspd-G~lLat~s~D--~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~ 219 (568)
T PTZ00420 144 SGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIK-GNLLSGTCVG--KHMHIIDPRKQEIASSFHIHDGGKNTKNIWI 219 (568)
T ss_pred EeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCC-CCEEEEEecC--CEEEEEECCCCcEEEEEecccCCceeEEEEe
Confidence 6667788888887543322222 2245788999986 5555554442 47777777654433222211111111 111
Q ss_pred ---ecCCCEEEEEeCCC---CeEEEEeCCC--CCeEEEecCCCCceEEE--EEE--CCEEEEEeCCCCeEEEEeCccC
Q psy13635 272 ---DVDNEKLYWCDAKT---DKIEMIDFDG--NNRRELINENLPHVFGI--SLL--GDYVYWTDWQRRSIDRVNKITG 337 (357)
Q Consensus 272 ---d~~~~~lY~~d~~~---~~I~~~~~dG--~~~~~i~~~~~~~p~gi--a~~--~~~ly~td~~~~~I~~~~~~~g 337 (357)
...++.|..+-... ..|...++.. .....+... ..+..| .++ .+.+|++-.+.+.|+.++...+
T Consensus 220 ~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld--~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 220 DGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID--NASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred eeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec--CCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 12334444433222 2576777653 222222111 112222 223 3677888777777877776444
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=86.02 E-value=26 Score=31.72 Aligned_cols=54 Identities=17% Similarity=0.108 Sum_probs=34.8
Q ss_pred EeCCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCC
Q psy13635 47 ATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDG 102 (357)
Q Consensus 47 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g 102 (357)
..++.|+++|+.++ +...+-........|.+.+..+.+ ++..-++.|.-.+.-+
T Consensus 72 ~~dg~vr~~Dln~~-~~~~igth~~~i~ci~~~~~~~~v-IsgsWD~~ik~wD~R~ 125 (323)
T KOG1036|consen 72 GLDGQVRRYDLNTG-NEDQIGTHDEGIRCIEYSYEVGCV-ISGSWDKTIKFWDPRN 125 (323)
T ss_pred ccCceEEEEEecCC-cceeeccCCCceEEEEeeccCCeE-EEcccCccEEEEeccc
Confidence 33778999999873 444444555667788888766654 4444456666666543
|
|
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=85.96 E-value=30 Score=32.39 Aligned_cols=161 Identities=15% Similarity=0.139 Sum_probs=96.5
Q ss_pred CceEEEeCCCCeEEEEeCCCCeEEEEEcCCCce--EEE-ecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecC-CC
Q psy13635 178 PDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHR--KVL-VNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLN-GG 253 (357)
Q Consensus 178 p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~--~~~-~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~d-g~ 253 (357)
|...+..+....|++++... +...++.+++.. +.+ ....-..|..+.+....-..-++|..+.-..+.....+ |.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K-~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSK-QRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCC-ceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 33344444555666666654 444444444332 111 11123678999998887888888876431222222223 33
Q ss_pred ceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEE-EecCCCCceEEEEEECCEEEEEeCCCCeEEEE
Q psy13635 254 ERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRE-LINENLPHVFGISLLGDYVYWTDWQRRSIDRV 332 (357)
Q Consensus 254 ~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~-i~~~~~~~p~gia~~~~~ly~td~~~~~I~~~ 332 (357)
.+..+ ..+.--..+++.+++.+|.-+|. ...|+.....+...-. +..++-.....|++..+.+.|+..+.++|+.=
T Consensus 144 ~~~~l--GhvSml~dVavS~D~~~IitaDR-DEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 144 CEPIL--GHVSMLLDVAVSPDDQFIITADR-DEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLW 220 (390)
T ss_pred cchhh--hhhhhhheeeecCCCCEEEEecC-CceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEE
Confidence 22222 34555678899887877777775 4578888877764321 11122234567888888889999999999888
Q ss_pred eCccCceeEE
Q psy13635 333 NKITGNDREV 342 (357)
Q Consensus 333 ~~~~g~~~~~ 342 (357)
+..+|+.+..
T Consensus 221 d~~sgk~L~t 230 (390)
T KOG3914|consen 221 DITSGKLLDT 230 (390)
T ss_pred ecccCCcccc
Confidence 8878887653
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=85.83 E-value=33 Score=32.67 Aligned_cols=196 Identities=12% Similarity=0.061 Sum_probs=110.7
Q ss_pred EEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEE
Q psy13635 75 AIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVL 154 (357)
Q Consensus 75 ~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~ 154 (357)
++.+...-..|..+...+..|.-.+++... ....+...-.....+++.+....+..+.+..+++...+.......-.
T Consensus 248 ~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~---p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~ 324 (463)
T KOG0270|consen 248 ALSWNRNFRNVLASGSADKTVKLWDVDTGK---PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGK 324 (463)
T ss_pred HHHhccccceeEEecCCCceEEEEEcCCCC---cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCc
Confidence 444444455677777777788888888764 24444445567788888888888888877777777766542110000
Q ss_pred EecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcC--CCceEEEecCCCCCceEEEEeCCCCE
Q psy13635 155 YWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLE--GTHRKVLVNTDLVEPRAITLSPAHGY 232 (357)
Q Consensus 155 ~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~--g~~~~~~~~~~~~~P~giavd~~~g~ 232 (357)
...- -....-++.|+..-..|++....++++-++.. |+....+.. .-....||.+....-.
T Consensus 325 ~wk~----------------~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~A-Hd~~ISgl~~n~~~p~ 387 (463)
T KOG0270|consen 325 EWKF----------------DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKA-HDDEISGLSVNIQTPG 387 (463)
T ss_pred eEEe----------------ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEe-ccCCcceEEecCCCCc
Confidence 0000 01345566676666667766666677766654 333333322 2235678888877666
Q ss_pred EEEEeCCCCCCeEEEEecCCCceEEEeeC--CCCCceEEEEecCCCEEEEEeCCCCeEEEEe
Q psy13635 233 LFWSDWNEKRPKIERSLLNGGERVLLVKD--RLGWPNGITLDVDNEKLYWCDAKTDKIEMID 292 (357)
Q Consensus 233 Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~--~l~~P~giaid~~~~~lY~~d~~~~~I~~~~ 292 (357)
+-.+.... ..+..-++++.+...+... .+..-.+.+.++.....|..-...+.+...+
T Consensus 388 ~l~t~s~d--~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd 447 (463)
T KOG0270|consen 388 LLSTASTD--KVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWD 447 (463)
T ss_pred ceeecccc--ceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEee
Confidence 76775553 3555555555544333322 2334455666655555555543333333333
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=85.49 E-value=28 Score=32.86 Aligned_cols=178 Identities=8% Similarity=0.046 Sum_probs=110.7
Q ss_pred CCCeEEEEEeCCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCC
Q psy13635 39 VAAQMLLFATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLIT 118 (357)
Q Consensus 39 ~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 118 (357)
.+..|+-.+.++.|++-|..-..+..++....-.+..+|++|..+.|..... ++-|.-.+...+.+ ...+...-+.
T Consensus 191 nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgsk-DnlVKlWDprSg~c---l~tlh~HKnt 266 (464)
T KOG0284|consen 191 NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSK-DNLVKLWDPRSGSC---LATLHGHKNT 266 (464)
T ss_pred CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccC-CceeEeecCCCcch---hhhhhhccce
Confidence 5677888888888988887665555555566667899999997776655444 34777777776642 2233333345
Q ss_pred ceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCC
Q psy13635 119 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTD 198 (357)
Q Consensus 119 p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~ 198 (357)
..++.+.+.+ +...|-+....+.++++.. -.+.....+- -.....++-.|....||.+....+
T Consensus 267 Vl~~~f~~n~-N~Llt~skD~~~kv~DiR~-mkEl~~~r~H---------------kkdv~~~~WhP~~~~lftsgg~Dg 329 (464)
T KOG0284|consen 267 VLAVKFNPNG-NWLLTGSKDQSCKVFDIRT-MKELFTYRGH---------------KKDVTSLTWHPLNESLFTSGGSDG 329 (464)
T ss_pred EEEEEEcCCC-CeeEEccCCceEEEEehhH-hHHHHHhhcc---------------hhhheeeccccccccceeeccCCC
Confidence 6777787644 6666777777788887751 1111110100 013456667788889998888877
Q ss_pred eEEEEEcCCCceEEEec-CCCCCceEEEEeCCCCEEEEEeC
Q psy13635 199 RIEVCRLEGTHRKVLVN-TDLVEPRAITLSPAHGYLFWSDW 238 (357)
Q Consensus 199 ~I~~~~~~g~~~~~~~~-~~~~~P~giavd~~~g~Ly~~d~ 238 (357)
.|.-...........+. ..-.....++.+|- |.|+-+-.
T Consensus 330 svvh~~v~~~~p~~~i~~AHd~~iwsl~~hPl-Ghil~tgs 369 (464)
T KOG0284|consen 330 SVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPL-GHILATGS 369 (464)
T ss_pred ceEEEeccccccccCCCcccccceeeeecccc-ceeEeecC
Confidence 77766666443322221 12345667777875 77766633
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=84.61 E-value=28 Score=30.88 Aligned_cols=207 Identities=16% Similarity=0.096 Sum_probs=117.3
Q ss_pred CceeEEEEcCCCeEEEEe--CCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeC
Q psy13635 118 TPDGLAIDWLTEKLYWTD--SETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDT 195 (357)
Q Consensus 118 ~p~glavd~~~~~ly~td--~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~ 195 (357)
.+...|+.+.++.+.+.. .+...+++...++.....+... .+..| .+|+. +.++..+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~----------------~l~~P---S~d~~-g~~W~v~~ 84 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGG----------------SLTRP---SWDPD-GWVWTVDD 84 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCC----------------ccccc---cccCC-CCEEEEEc
Confidence 577888887777776666 5667888887777655544211 22233 56755 78888877
Q ss_pred CCCeEEEE--EcCCCceEEEecC-CCC-CceEEEEeCCCCEEEEEeCCCCCCeEEEEec--CCCc-eE------EEeeCC
Q psy13635 196 GTDRIEVC--RLEGTHRKVLVNT-DLV-EPRAITLSPAHGYLFWSDWNEKRPKIERSLL--NGGE-RV------LLVKDR 262 (357)
Q Consensus 196 ~~~~I~~~--~~~g~~~~~~~~~-~~~-~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~--dg~~-~~------~~~~~~ 262 (357)
+....... ..+|.....-+.. .+. ....+.++|+.-++-+.-.....++|+.... ++.. .. .+....
T Consensus 85 ~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~ 164 (253)
T PF10647_consen 85 GSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL 164 (253)
T ss_pred CCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc
Confidence 65543333 2345444333322 222 6789999998777666553322357776653 2222 11 111122
Q ss_pred CCCceEEEEecCCCEEEEEeCC-CCeEEE-EeCCCCCeEEEecCCCCceEEEEE--ECCEEEEEeCCCCeEEEEeCccCc
Q psy13635 263 LGWPNGITLDVDNEKLYWCDAK-TDKIEM-IDFDGNNRRELINENLPHVFGISL--LGDYVYWTDWQRRSIDRVNKITGN 338 (357)
Q Consensus 263 l~~P~giaid~~~~~lY~~d~~-~~~I~~-~~~dG~~~~~i~~~~~~~p~gia~--~~~~ly~td~~~~~I~~~~~~~g~ 338 (357)
+..+..++-- .++.|.+.-.. ...+.. +..+|...+.+.... ..+.-++. ....+|.++. +.+++ ...|.
T Consensus 165 ~~~v~~v~W~-~~~~L~V~~~~~~~~~~~~v~~dG~~~~~l~~~~-~~~~v~a~~~~~~~~~~t~~--~~~~~--~~~~~ 238 (253)
T PF10647_consen 165 LSDVTDVAWS-DDSTLVVLGRSAGGPVVRLVSVDGGPSTPLPSVN-LGVPVVAVAASPSTVYVTDD--GGVLQ--SRSGA 238 (253)
T ss_pred cCcceeeeec-CCCEEEEEeCCCCCceeEEEEccCCcccccCCCC-CCcceEEeeCCCcEEEEECC--CcEEE--CCCCC
Confidence 3455677775 56666655543 334555 778887766553322 23333343 3577888873 46655 33677
Q ss_pred eeEEEecccCCc
Q psy13635 339 DREVIIERSCTG 350 (357)
Q Consensus 339 ~~~~i~~~l~~p 350 (357)
.-..+......|
T Consensus 239 ~W~~v~~~~~~P 250 (253)
T PF10647_consen 239 SWREVPGGVGDP 250 (253)
T ss_pred cceEccCCCCCC
Confidence 776666655444
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=84.23 E-value=32 Score=31.12 Aligned_cols=239 Identities=7% Similarity=0.010 Sum_probs=132.3
Q ss_pred EEeecCCCCeEEEEEeCCc-EEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCC-CeEEEEEcCCCCc-ceeE
Q psy13635 33 YALSHHVAAQMLLFATSKD-IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGT-EMISCCTFDGNNV-GSKH 109 (357)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~-~~I~~~~~~g~~~-~~~~ 109 (357)
|++.=+++...++-++++. +.+-|.-++.+...+.-.-.-...-+|.|..+.+=-....+ -.||.++....+. +...
T Consensus 59 ~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~ 138 (343)
T KOG0286|consen 59 YAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVS 138 (343)
T ss_pred eeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceee
Confidence 4555555555565555443 44556555444444433444567778888666543333322 2577666442210 1111
Q ss_pred EEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCe
Q psy13635 110 NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARN 189 (357)
Q Consensus 110 ~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~ 189 (357)
..+...-.......+- .+.-.+|.++..+..-.++........+..- .....+|++-|.+++
T Consensus 139 r~l~gHtgylScC~f~--dD~~ilT~SGD~TCalWDie~g~~~~~f~GH----------------~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 139 RELAGHTGYLSCCRFL--DDNHILTGSGDMTCALWDIETGQQTQVFHGH----------------TGDVMSLSLSPSDGN 200 (343)
T ss_pred eeecCccceeEEEEEc--CCCceEecCCCceEEEEEcccceEEEEecCC----------------cccEEEEecCCCCCC
Confidence 1222222223333332 2333456666667666676544443333211 124567777777889
Q ss_pred EEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeC-C-CCCce
Q psy13635 190 LYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKD-R-LGWPN 267 (357)
Q Consensus 190 lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~-~-l~~P~ 267 (357)
.|++..-......-|...........+.-...+.+.+.|. |.-|.+-... +....+++.......+++. . ....+
T Consensus 201 tFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~-G~afatGSDD--~tcRlyDlRaD~~~a~ys~~~~~~git 277 (343)
T KOG0286|consen 201 TFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPS-GDAFATGSDD--ATCRLYDLRADQELAVYSHDSIICGIT 277 (343)
T ss_pred eEEecccccceeeeeccCcceeEeecccccccceEEEccC-CCeeeecCCC--ceeEEEeecCCcEEeeeccCcccCCce
Confidence 9998877665555555433443444445567888999985 8888887763 4666666665444444432 2 33347
Q ss_pred EEEEecCCCEEEEEeCCCCeEEEEeC
Q psy13635 268 GITLDVDNEKLYWCDAKTDKIEMIDF 293 (357)
Q Consensus 268 giaid~~~~~lY~~d~~~~~I~~~~~ 293 (357)
++++. ..|+|.++-.....+.+-|.
T Consensus 278 Sv~FS-~SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 278 SVAFS-KSGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred eEEEc-ccccEEEeeecCCceeEeec
Confidence 89997 67888887666666666554
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=84.13 E-value=41 Score=32.39 Aligned_cols=69 Identities=13% Similarity=0.086 Sum_probs=35.4
Q ss_pred ceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEec----CCC--------CcceeeeeccCcccccCCceEEEeCC
Q psy13635 119 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWE----DID--------QPRAIASYKLPTIEVEHPDGVAVDWV 186 (357)
Q Consensus 119 p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~----~~~--------~p~~i~~~~~~~~~~~~p~glavD~~ 186 (357)
|..|.+.-..+.||++....+.|+.+++.......++.+ +.- +.+.+ -..|+=+.+...
T Consensus 314 itDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l---------~GgPqMvqlS~D 384 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRL---------RGGPQMVQLSLD 384 (461)
T ss_dssp ---EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS---------------S----EEE-TT
T ss_pred eEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcccccccc---------CCCCCeEEEccC
Confidence 466667777999999999999999999866443322211 110 11111 136777888888
Q ss_pred CCeEEEEeCC
Q psy13635 187 ARNLYWTDTG 196 (357)
Q Consensus 187 ~~~lY~td~~ 196 (357)
+.+||||++-
T Consensus 385 GkRlYvTnSL 394 (461)
T PF05694_consen 385 GKRLYVTNSL 394 (461)
T ss_dssp SSEEEEE---
T ss_pred CeEEEEEeec
Confidence 9999999864
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=83.82 E-value=31 Score=30.67 Aligned_cols=195 Identities=14% Similarity=0.077 Sum_probs=100.4
Q ss_pred ccCCEEEEEeCCCC-eEEEEEcCCCC-c---ceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceE-E
Q psy13635 80 YKKSMVCWTDHGTE-MISCCTFDGNN-V---GSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRK-V 153 (357)
Q Consensus 80 ~~~~~ly~~d~~~~-~I~~~~~~g~~-~---~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~-~ 153 (357)
...+++||++...+ .+.....-... . ....-.+...... .|-+|- ++.||+--.+...|.+.++..+... .
T Consensus 28 ~~~~~iy~~~~~~~~~v~ey~~~~~f~~~~~~~~~~~Lp~~~~G-tG~vVY--ngslYY~~~~s~~IvkydL~t~~v~~~ 104 (250)
T PF02191_consen 28 SDSEKIYVTSGFSGNTVYEYRNYEDFLRNGRSSRTYKLPYPWQG-TGHVVY--NGSLYYNKYNSRNIVKYDLTTRSVVAR 104 (250)
T ss_pred CCCCCEEEECccCCCEEEEEcCHhHHhhcCCCceEEEEeceecc-CCeEEE--CCcEEEEecCCceEEEEECcCCcEEEE
Confidence 34678999877543 44443221111 0 0112233333333 344443 6889999999999999999887654 3
Q ss_pred EEecC--CCCcceeeeeccCcccccCCceEEEeCCCC--eEEEEeCCCCeEEEEEcCCCce--EEEecCCCCCc---eEE
Q psy13635 154 LYWED--IDQPRAIASYKLPTIEVEHPDGVAVDWVAR--NLYWTDTGTDRIEVCRLEGTHR--KVLVNTDLVEP---RAI 224 (357)
Q Consensus 154 ~~~~~--~~~p~~i~~~~~~~~~~~~p~glavD~~~~--~lY~td~~~~~I~~~~~~g~~~--~~~~~~~~~~P---~gi 224 (357)
....+ ..+.... ...-..--++|+| .+| -||-+....+.|....+|-... +......+..+ ++.
T Consensus 105 ~~L~~A~~~n~~~y------~~~~~t~iD~AvD-E~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T~~~k~~~~naF 177 (250)
T PF02191_consen 105 RELPGAGYNNRFPY------YWSGYTDIDFAVD-ENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNTSYPKRSAGNAF 177 (250)
T ss_pred EECCccccccccce------ecCCCceEEEEEc-CCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEeccCchhhccee
Confidence 22111 1000000 0011122578999 444 2344455555566655554332 22222233322 345
Q ss_pred EEeCCCCEEEEEeCCCC-CCeEE-EEecCCCceE---EEeeCCCCCceEEEEecCCCEEEEEeCCCCe
Q psy13635 225 TLSPAHGYLFWSDWNEK-RPKIE-RSLLNGGERV---LLVKDRLGWPNGITLDVDNEKLYWCDAKTDK 287 (357)
Q Consensus 225 avd~~~g~Ly~~d~~~~-~~~I~-~~~~dg~~~~---~~~~~~l~~P~giaid~~~~~lY~~d~~~~~ 287 (357)
.++ |-||.++.... ..+|. ..++...... ..+.........|..+|.+.+||.=|.+..-
T Consensus 178 mvC---GvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd~G~~v 242 (250)
T PF02191_consen 178 MVC---GVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWDNGYQV 242 (250)
T ss_pred eEe---eEEEEEEECCCCCcEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEECCeEE
Confidence 555 89999998753 12333 3333322111 1122234456788999999999988855433
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=83.67 E-value=41 Score=32.02 Aligned_cols=242 Identities=12% Similarity=0.176 Sum_probs=125.8
Q ss_pred EEEEEccCCEEEEE-eCCCC---eEEEEEcCCCCcceeEEEEeCCcCCc--eeEEEEcCCCeEEEEeCC----------C
Q psy13635 75 AIDYYYKKSMVCWT-DHGTE---MISCCTFDGNNVGSKHNVITNGLITP--DGLAIDWLTEKLYWTDSE----------T 138 (357)
Q Consensus 75 ~i~~d~~~~~ly~~-d~~~~---~I~~~~~~g~~~~~~~~~~~~~~~~p--~glavd~~~~~ly~td~~----------~ 138 (357)
+..+++++..+-++ |.++. .|+..++.++. .+...+..+ .+++....+..+|++... .
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~------~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGK------FLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTE------EEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCc------CcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence 56677777777666 33222 47777887653 112222222 236666555677777643 3
Q ss_pred CEEEEEEcCCCceE--EEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC--C-CeEEEEEcCCC-----
Q psy13635 139 NKLEVSSLDGKKRK--VLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG--T-DRIEVCRLEGT----- 208 (357)
Q Consensus 139 ~~I~~~~~~g~~~~--~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~--~-~~I~~~~~~g~----- 208 (357)
.+|++..+.....+ .++... .. .+ .-.++.....++.|++.-.. . ..++.++++..
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe~~-~~------------~~-~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~ 267 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFEEP-DE------------PF-WFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDA 267 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC-T-TC------------TT-SEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-
T ss_pred cEEEEEECCCChHhCeeEEeec-CC------------Cc-EEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcC
Confidence 34666666554332 333221 11 11 12256667667777765433 2 36888888763
Q ss_pred ceEEEecCCCCCceEEEEeCCCCEEEE-EeCCCCCCeEEEEecCCCce---E-EEeeCCC-CCceEEEEecCCCEEEEEe
Q psy13635 209 HRKVLVNTDLVEPRAITLSPAHGYLFW-SDWNEKRPKIERSLLNGGER---V-LLVKDRL-GWPNGITLDVDNEKLYWCD 282 (357)
Q Consensus 209 ~~~~~~~~~~~~P~giavd~~~g~Ly~-~d~~~~~~~I~~~~~dg~~~---~-~~~~~~l-~~P~giaid~~~~~lY~~d 282 (357)
..+.+....-..-..+... ++.+|+ ++.+..+++|.+++++.... . +++...- ....++.+ .+++|++..
T Consensus 268 ~~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~ 343 (414)
T PF02897_consen 268 KPKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSY 343 (414)
T ss_dssp SEEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEE
T ss_pred CcEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEE
Confidence 3334433221222223333 577775 55444468999999987652 3 4443321 23456666 578888766
Q ss_pred C--CCCeEEEEeCC-CCCeEEEecCCCCceEEEEEE--CCEEEE--EeCCC-CeEEEEeCccCcee
Q psy13635 283 A--KTDKIEMIDFD-GNNRRELINENLPHVFGISLL--GDYVYW--TDWQR-RSIDRVNKITGNDR 340 (357)
Q Consensus 283 ~--~~~~I~~~~~d-G~~~~~i~~~~~~~p~gia~~--~~~ly~--td~~~-~~I~~~~~~~g~~~ 340 (357)
. ...+|..++++ |.....+.........++..+ ++.+++ +++.. .++++++..+|+..
T Consensus 344 ~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 344 RENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 4 44578889998 655544433223333444433 355544 33333 67889998666543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=82.73 E-value=44 Score=31.65 Aligned_cols=208 Identities=11% Similarity=0.098 Sum_probs=87.3
Q ss_pred CCcEEEEEcCCCCcceEeccCC-CcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEE--EeCCcCCceeEEEE
Q psy13635 49 SKDIRIANLSRPLKPVTIIKDL-EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV--ITNGLITPDGLAID 125 (357)
Q Consensus 49 ~~~i~~~~~~~~~~~~~~~~~~-~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~--~~~~~~~p~glavd 125 (357)
..++..+|+.+ ...+++...- ....|.-+.+.+..+|+... ...++++++++.. ...+ +..+...-....++
T Consensus 59 ~~nly~lDL~t-~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~-~~~l~~vdL~T~e---~~~vy~~p~~~~g~gt~v~n 133 (386)
T PF14583_consen 59 NRNLYLLDLAT-GEITQLTDGPGDNTFGGFLSPDDRALYYVKN-GRSLRRVDLDTLE---ERVVYEVPDDWKGYGTWVAN 133 (386)
T ss_dssp S-EEEEEETTT--EEEE---SS-B-TTT-EE-TTSSEEEEEET-TTEEEEEETTT-----EEEEEE--TTEEEEEEEEE-
T ss_pred CcceEEEEccc-CEEEECccCCCCCccceEEecCCCeEEEEEC-CCeEEEEECCcCc---EEEEEECCcccccccceeeC
Confidence 45688999987 4555554432 22335566788889876542 3589999999875 1222 22222211122233
Q ss_pred cCCCeEEEE-eC---------------------CCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEE
Q psy13635 126 WLTEKLYWT-DS---------------------ETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAV 183 (357)
Q Consensus 126 ~~~~~ly~t-d~---------------------~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glav 183 (357)
. .+..++. .. -..+|.++++.++..+++.....=- ..-..+|..
T Consensus 134 ~-d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wl----------gH~~fsP~d--- 199 (386)
T PF14583_consen 134 S-DCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWL----------GHVQFSPTD--- 199 (386)
T ss_dssp T-TSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-E----------EEEEEETTE---
T ss_pred C-CccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccc----------cCcccCCCC---
Confidence 2 2333321 10 1257888888887777776433100 001112321
Q ss_pred eCCCCeEEEEeCCC-----CeEEEEEcCCCceEEEecCCCCCceEEE----EeCCCCEEEEEeC-C-CCCCeEEEEecCC
Q psy13635 184 DWVARNLYWTDTGT-----DRIEVCRLEGTHRKVLVNTDLVEPRAIT----LSPAHGYLFWSDW-N-EKRPKIERSLLNG 252 (357)
Q Consensus 184 D~~~~~lY~td~~~-----~~I~~~~~~g~~~~~~~~~~~~~P~gia----vd~~~g~Ly~~d~-~-~~~~~I~~~~~dg 252 (357)
.+.|=+|..+. .||..++.+|+..+.+.... +.-++ ..+.+..|++... . ....-|..++++.
T Consensus 200 ---p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~---~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t 273 (386)
T PF14583_consen 200 ---PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM---EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDT 273 (386)
T ss_dssp ---EEEEEEEE-S-TTTSS-SEEEEETTS---EESS------TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT
T ss_pred ---CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC---CCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCC
Confidence 12333455542 49999999999877765421 22221 2233333433222 1 1123566666665
Q ss_pred CceEEEeeCCCCCceEEEEecCCCEEEEEeCC
Q psy13635 253 GERVLLVKDRLGWPNGITLDVDNEKLYWCDAK 284 (357)
Q Consensus 253 ~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~ 284 (357)
..++.+..- ..-.-+... .++.|++-|.+
T Consensus 274 ~~~~~~~~~--p~~~H~~ss-~Dg~L~vGDG~ 302 (386)
T PF14583_consen 274 GERRRLMEM--PWCSHFMSS-PDGKLFVGDGG 302 (386)
T ss_dssp --EEEEEEE---SEEEEEE--TTSSEEEEEE-
T ss_pred CCceEEEeC--CceeeeEEc-CCCCEEEecCC
Confidence 444433211 112233333 46667776644
|
|
| >COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=82.36 E-value=35 Score=30.29 Aligned_cols=76 Identities=14% Similarity=0.131 Sum_probs=42.0
Q ss_pred cCCCcEEEEEEEc--cCC--EEEEEeCCCCeEEEEEcC-CCCcceeEEEEeCCc---CCceeEEEEcCCCeEEEEeCCCC
Q psy13635 68 KDLEEGAAIDYYY--KKS--MVCWTDHGTEMISCCTFD-GNNVGSKHNVITNGL---ITPDGLAIDWLTEKLYWTDSETN 139 (357)
Q Consensus 68 ~~~~~~~~i~~d~--~~~--~ly~~d~~~~~I~~~~~~-g~~~~~~~~~~~~~~---~~p~glavd~~~~~ly~td~~~~ 139 (357)
++++.+.|++... ..+ .+|+++.. +.|....+- +.. ..........+ ...+|+..|-..+.||+++.. -
T Consensus 150 s~~s~~YGl~lyrs~ktgd~yvfV~~~q-G~~~Qy~l~d~gn-Gkv~~k~vR~fk~~tQTEG~VaDdEtG~LYIaeEd-v 226 (364)
T COG4247 150 SSSSSAYGLALYRSPKTGDYYVFVNRRQ-GDIAQYKLIDQGN-GKVGTKLVRQFKIPTQTEGMVADDETGFLYIAEED-V 226 (364)
T ss_pred cCcccceeeEEEecCCcCcEEEEEecCC-CceeEEEEEecCC-ceEcceeeEeeecCCcccceeeccccceEEEeecc-c
Confidence 4667788887754 323 33444444 556555542 221 11122222222 356888888889999988753 4
Q ss_pred EEEEEEc
Q psy13635 140 KLEVSSL 146 (357)
Q Consensus 140 ~I~~~~~ 146 (357)
.|+++..
T Consensus 227 aiWK~~A 233 (364)
T COG4247 227 AIWKYEA 233 (364)
T ss_pred eeeeccc
Confidence 5665543
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=81.37 E-value=47 Score=30.98 Aligned_cols=111 Identities=14% Similarity=0.041 Sum_probs=67.6
Q ss_pred ecCCCCeEEEEEe---CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEE
Q psy13635 36 SHHVAAQMLLFAT---SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI 112 (357)
Q Consensus 36 ~~~~~~~~l~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~ 112 (357)
+.+...-+|.+.. ..+|..+|+..-.....+-..-+...+++|++ +|.+.=+-...|.|.|+-.-... +...-.
T Consensus 136 S~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G--~kl~eF 212 (391)
T KOG2110|consen 136 SPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEG--QKLYEF 212 (391)
T ss_pred ccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCc--cEeeee
Confidence 3343344566554 34688888776445555556677788999997 55565555555665554433221 112222
Q ss_pred eCC--cCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCc
Q psy13635 113 TNG--LITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKK 150 (357)
Q Consensus 113 ~~~--~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~ 150 (357)
..| ..+...|++++.+. +.-+.+++++|..+.++...
T Consensus 213 RRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 213 RRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred eCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEEecccc
Confidence 333 35678899997655 44556678899999887654
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=80.96 E-value=48 Score=30.89 Aligned_cols=150 Identities=10% Similarity=0.055 Sum_probs=87.1
Q ss_pred EEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceE-EEEeCCCCEEEEEeCCCC-CCeEEEEecCCCceEEEe
Q psy13635 182 AVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRA-ITLSPAHGYLFWSDWNEK-RPKIERSLLNGGERVLLV 259 (357)
Q Consensus 182 avD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~g-iavd~~~g~Ly~~d~~~~-~~~I~~~~~dg~~~~~~~ 259 (357)
+|--..++|.++-.. .|++.|+..-....-+...-.+|.| +|+.+..+.-|.+-.+.. .+.|...+...-.....+
T Consensus 92 ~VrmNr~RLvV~Lee--~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I 169 (391)
T KOG2110|consen 92 AVRMNRKRLVVCLEE--SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTI 169 (391)
T ss_pred EEEEccceEEEEEcc--cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEE
Confidence 343346677777664 3888887653322222222245663 456665555555543321 378888887665554444
Q ss_pred eCCCCCceEEEEecCCCEEEEEeCCCCeEEEEe--CCCCCeEEEecCC-CCceEEEEEEC-CEEEEEeCCCCeEEEEeC
Q psy13635 260 KDRLGWPNGITLDVDNEKLYWCDAKTDKIEMID--FDGNNRRELINEN-LPHVFGISLLG-DYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 260 ~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~--~dG~~~~~i~~~~-~~~p~gia~~~-~~ly~td~~~~~I~~~~~ 334 (357)
...-..-..||++ .+|.+.-+-+..|.|.|+- .+|+...++--+- .-....|++.. ..+.-+.+.+++|+.+..
T Consensus 170 ~aH~~~lAalafs-~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL 247 (391)
T KOG2110|consen 170 NAHKGPLAALAFS-PDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKL 247 (391)
T ss_pred EecCCceeEEEEC-CCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEe
Confidence 4444456789998 6778888887788776654 3666555443211 11345677764 344444556688877765
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=80.23 E-value=35 Score=28.88 Aligned_cols=100 Identities=10% Similarity=0.028 Sum_probs=60.1
Q ss_pred CceEEEeCCCCeEEEEeC-CCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceE
Q psy13635 178 PDGVAVDWVARNLYWTDT-GTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERV 256 (357)
Q Consensus 178 p~glavD~~~~~lY~td~-~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~ 256 (357)
..+++..|.+..+.+... ...+|...+..+.....+. -...+.|..+|.+..|..+..+...+.|...+.+ ...
T Consensus 62 I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~---~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~--~~~ 136 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG---TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR--KKK 136 (194)
T ss_pred eEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeec---CCCceEEEECCCCCEEEEEEccCCCcEEEEEECC--CCE
Confidence 455666666666655543 3347888887765544442 2456789999987777777765333567777776 333
Q ss_pred EEeeCCCCCceEEEEecCCCEEEEEe
Q psy13635 257 LLVKDRLGWPNGITLDVDNEKLYWCD 282 (357)
Q Consensus 257 ~~~~~~l~~P~giaid~~~~~lY~~d 282 (357)
.+....-.....++.+|++..+..+.
T Consensus 137 ~i~~~~~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 137 KISTFEHSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred EeeccccCcEEEEEEcCCCCEEEEEE
Confidence 33333333456777776555554443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 357 | ||||
| 4dg6_A | 616 | Crystal Structure Of Domains 1 And 2 Of Lrp6 Length | 2e-65 | ||
| 3s94_A | 619 | Crystal Structure Of Lrp6-E1e2 Length = 619 | 2e-65 | ||
| 3s8v_A | 623 | Crystal Structure Of Lrp6-Dkk1 Complex Length = 623 | 8e-47 | ||
| 4a0p_A | 628 | Crystal Structure Of Lrp6p3e3p4e4 Length = 628 | 9e-47 | ||
| 3s2k_A | 629 | Structural Basis Of Wnt Signaling Inhibition By Dic | 1e-46 | ||
| 3v65_B | 386 | Crystal Structure Of Agrin And Lrp4 Complex Length | 2e-45 | ||
| 3v65_B | 386 | Crystal Structure Of Agrin And Lrp4 Complex Length | 3e-10 | ||
| 3v64_C | 349 | Crystal Structure Of Agrin And Lrp4 Length = 349 | 2e-45 | ||
| 3v64_C | 349 | Crystal Structure Of Agrin And Lrp4 Length = 349 | 3e-10 | ||
| 3soq_A | 318 | The Structure Of The First Ywtd Beta Propeller Doma | 3e-43 | ||
| 3sob_B | 316 | The Structure Of The First Ywtd Beta Propeller Doma | 3e-43 | ||
| 1npe_A | 267 | Crystal Structure Of Nidogen/laminin Complex Length | 4e-37 | ||
| 1ijq_A | 316 | Crystal Structure Of The Ldl Receptor Ywtd-Egf Doma | 4e-35 | ||
| 3p5b_L | 400 | The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE | 5e-35 | ||
| 3p5c_L | 440 | The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE | 6e-35 | ||
| 3m0c_C | 791 | The X-Ray Crystal Structure Of Pcsk9 In Complex Wit | 1e-34 | ||
| 1n7d_A | 699 | Extracellular Domain Of The Ldl Receptor Length = 6 | 2e-34 | ||
| 1rwi_B | 270 | Extracellular Domain Of Mycobacterium Tuberculosis | 7e-06 |
| >pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6 Length = 616 | Back alignment and structure |
|
| >pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2 Length = 619 | Back alignment and structure |
|
| >pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex Length = 623 | Back alignment and structure |
|
| >pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4 Length = 628 | Back alignment and structure |
|
| >pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf Binding To Lrp56. Length = 629 | Back alignment and structure |
|
| >pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex Length = 386 | Back alignment and structure |
|
| >pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex Length = 386 | Back alignment and structure |
|
| >pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4 Length = 349 | Back alignment and structure |
|
| >pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4 Length = 349 | Back alignment and structure |
|
| >pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Dkk1 Peptide Length = 318 | Back alignment and structure |
|
| >pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Fab Length = 316 | Back alignment and structure |
|
| >pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex Length = 267 | Back alignment and structure |
|
| >pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair Length = 316 | Back alignment and structure |
|
| >pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 400 | Back alignment and structure |
|
| >pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 440 | Back alignment and structure |
|
| >pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The Ldl Receptor Length = 791 | Back alignment and structure |
|
| >pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor Length = 699 | Back alignment and structure |
|
| >pdb|1RWI|B Chain B, Extracellular Domain Of Mycobacterium Tuberculosis Pknd Length = 270 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267 | Back alignment and structure |
|---|
Score = 260 bits (666), Expect = 3e-86
Identities = 79/260 (30%), Positives = 130/260 (50%), Gaps = 21/260 (8%)
Query: 87 WTDHGTEMISCCTFDGNNVGS--KHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVS 144
+ G I + N + + GLA D + + +YWTD + +
Sbjct: 6 FAQTGK--IERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRA 63
Query: 145 SLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCR 204
SL G + + +D+ P+G+A+D + R ++WTD+ DRIEV +
Sbjct: 64 SLHGGEPTTIIRQDLG----------------SPEGIALDHLGRTIFWTDSQLDRIEVAK 107
Query: 205 LEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLG 264
++GT R+VL +T LV PR I P G L+W+DWN PKIE S ++G R +L +D LG
Sbjct: 108 MDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLG 167
Query: 265 WPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDW 324
PNG+T D + +L W DA T + E ++ RR+++ E L + F ++ G +Y+TDW
Sbjct: 168 LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL-EGLQYPFAVTSYGKNLYYTDW 226
Query: 325 QRRSIDRVNKITGNDREVII 344
+ S+ ++ + +
Sbjct: 227 KTNSVIAMDLAISKEMDTFH 246
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267 | Back alignment and structure |
|---|
Score = 80.6 bits (199), Expect = 1e-17
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 4/117 (3%)
Query: 232 YLFWSDWNE-KRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEM 290
+L ++ + +R +ER+ + E + G+ D ++ +YW D I
Sbjct: 3 HLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGR 62
Query: 291 IDFDGNNRRELINENLPHVFGISL--LGDYVYWTDWQRRSIDRVNKITGNDREVIIE 345
G +I ++L GI+L LG ++WTD Q I+ + G R V+ +
Sbjct: 63 ASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAK-MDGTQRRVLFD 118
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
Score = 259 bits (662), Expect = 9e-81
Identities = 79/269 (29%), Positives = 130/269 (48%), Gaps = 20/269 (7%)
Query: 86 CWTDHGTEMISCCT-----FDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNK 140
G+ T S++ + L L + + ++YW+D
Sbjct: 370 ACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRM 429
Query: 141 LEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRI 200
+ + LD Y I + +++ PDG+AVDW+ N+YWTD+ +
Sbjct: 430 ICSTQLDRAHGVSSYDTVISR------------DIQAPDGLAVDWIHSNIYWTDSVLGTV 477
Query: 201 EVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVK 260
V +G RK L +PRAI + P HG+++W+DW KI++ LNG + LV
Sbjct: 478 SVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGT-PAKIKKGGLNGVDIYSLVT 536
Query: 261 DRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELI--NENLPHVFGISLLGDY 318
+ + WPNGITLD+ + +LYW D+K I ID +G NR+ ++ + L H F +++ D
Sbjct: 537 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDK 596
Query: 319 VYWTDWQRRSIDRVNKITGNDREVIIERS 347
V+WTD +I N++TG+D ++ E
Sbjct: 597 VFWTDIINEAIFSANRLTGSDVNLLAENL 625
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
Score = 190 bits (483), Expect = 5e-55
Identities = 79/273 (28%), Positives = 120/273 (43%), Gaps = 21/273 (7%)
Query: 42 QMLLFATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFD 101
L F ++R L R + ++I +L A+D + + W+D MI D
Sbjct: 378 AYLFFTNRHEVRKMTLDRS-EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLD 436
Query: 102 GNNVGSKH-NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDID 160
+ S + VI+ + PDGLA+DW+ +YWTDS + V+ G KRK L+ E
Sbjct: 437 RAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGS 496
Query: 161 QPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTD-RIEVCRLEGTHRKVLVNTDLV 219
+PRAI VD V +YWTD GT +I+ L G LV ++
Sbjct: 497 KPRAIV----------------VDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ 540
Query: 220 EPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLY 279
P ITL G L+W D K I +NGG R +++D + +L V +K++
Sbjct: 541 WPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVF 598
Query: 280 WCDAKTDKIEMIDFDGNNRRELINENLPHVFGI 312
W D + I + + L+ ENL +
Sbjct: 599 WTDIINEAIFSANRLTGSDVNLLAENLLSPEDM 631
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
Score = 84.1 bits (207), Expect = 7e-18
Identities = 34/180 (18%), Positives = 71/180 (39%), Gaps = 20/180 (11%)
Query: 47 ATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTE-MISCCTFDGNNV 105
+ + +A+ + + + AI + WTD GT I +G ++
Sbjct: 472 SVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 531
Query: 106 GSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAI 165
++++T + P+G+ +D L+ +LYW DS+ + + ++G RK + ++
Sbjct: 532 ---YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA--- 585
Query: 166 ASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAIT 225
HP +AV ++WTD + I L+ +L+ P +
Sbjct: 586 -----------HPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV 632
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
Score = 57.5 bits (138), Expect = 3e-09
Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 5/96 (5%)
Query: 73 GAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLY 132
G +D + + W D IS +G N + ++ + ++ +K++
Sbjct: 544 GITLDLLSGR--LYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVFEDKVF 598
Query: 133 WTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASY 168
WTD + ++ L E++ P + +
Sbjct: 599 WTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLF 634
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
Score = 260 bits (666), Expect = 1e-80
Identities = 80/273 (29%), Positives = 132/273 (48%), Gaps = 19/273 (6%)
Query: 77 DYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDS 136
S+ + T D + S + N L + + ++YW+D
Sbjct: 388 ACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRN----VVALDTEVASNRIYWSDL 443
Query: 137 ETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG 196
+ + LD Y I + +++ PDG+AVDW+ N+YWTD+
Sbjct: 444 SQRMICSTQLDRAHGVSSYDTVISR------------DIQAPDGLAVDWIHSNIYWTDSV 491
Query: 197 TDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERV 256
+ V +G RK L + +PRAI + P HG+++W+DW KI++ LNG +
Sbjct: 492 LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT-PAKIKKGGLNGVDIY 550
Query: 257 LLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELI--NENLPHVFGISL 314
LV + + WPNGITLD+ + +LYW D+K I ID +G NR+ ++ + L H F +++
Sbjct: 551 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV 610
Query: 315 LGDYVYWTDWQRRSIDRVNKITGNDREVIIERS 347
D V+WTD +I N++TG+D ++ E
Sbjct: 611 FEDKVFWTDIINEAIFSANRLTGSDVNLLAENL 643
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
Score = 193 bits (490), Expect = 2e-55
Identities = 74/252 (29%), Positives = 113/252 (44%), Gaps = 20/252 (7%)
Query: 63 PVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKH-NVITNGLITPDG 121
++I +L A+D + + W+D MI D + S + VI+ + PDG
Sbjct: 416 YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 475
Query: 122 LAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGV 181
LA+DW+ +YWTDS + V+ G KRK L+ E+ +PRAI
Sbjct: 476 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIV--------------- 520
Query: 182 AVDWVARNLYWTDTGTD-RIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNE 240
VD V +YWTD GT +I+ L G LV ++ P ITL G L+W D
Sbjct: 521 -VDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS-- 577
Query: 241 KRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRE 300
K I +NGG R +++D + +L V +K++W D + I + +
Sbjct: 578 KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVN 637
Query: 301 LINENLPHVFGI 312
L+ ENL +
Sbjct: 638 LLAENLLSPEDM 649
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
Score = 84.1 bits (207), Expect = 6e-18
Identities = 34/180 (18%), Positives = 72/180 (40%), Gaps = 20/180 (11%)
Query: 47 ATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTE-MISCCTFDGNNV 105
+ + +A+ + ++ + AI + WTD GT I +G ++
Sbjct: 490 SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 549
Query: 106 GSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAI 165
++++T + P+G+ +D L+ +LYW DS+ + + ++G RK + ++
Sbjct: 550 ---YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA--- 603
Query: 166 ASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAIT 225
HP +AV ++WTD + I L+ +L+ P +
Sbjct: 604 -----------HPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV 650
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
Score = 57.9 bits (139), Expect = 2e-09
Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 5/96 (5%)
Query: 73 GAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLY 132
G +D + + W D IS +G N + ++ + ++ +K++
Sbjct: 562 GITLDLLSGR--LYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVFEDKVF 616
Query: 133 WTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASY 168
WTD + ++ L E++ P + +
Sbjct: 617 WTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLF 652
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386 | Back alignment and structure |
|---|
Score = 249 bits (637), Expect = 2e-80
Identities = 86/260 (33%), Positives = 134/260 (51%), Gaps = 20/260 (7%)
Query: 86 CWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSS 145
+ + + I D E ++W+D +++ ++
Sbjct: 88 PVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALD---FHHRRELVFWSDVTLDRILRAN 144
Query: 146 LDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRL 205
L+G + + ++ P G+AVDWV LYWTD+GT RIEV L
Sbjct: 145 LNGSNVEEVVSTGLE----------------SPGGLAVDWVHDKLYWTDSGTSRIEVANL 188
Query: 206 EGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGW 265
+G HRKVL+ L +PRAI L P G ++W+DW P+IE S ++G R ++ L W
Sbjct: 189 DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN-TPRIEASSMDGSGRRIIADTHLFW 247
Query: 266 PNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQ 325
PNG+T+D ++YW DAK IE + DG++R+ +I++ LPH F I++ D +YWTDW
Sbjct: 248 PNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWH 307
Query: 326 RRSIDRVNKITGNDREVIIE 345
+SI+ NK TG ++E+I
Sbjct: 308 TKSINSANKFTGKNQEIIRN 327
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386 | Back alignment and structure |
|---|
Score = 189 bits (480), Expect = 5e-57
Identities = 81/255 (31%), Positives = 129/255 (50%), Gaps = 24/255 (9%)
Query: 77 DYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDS 136
D+++++ +V W+D + I +G+NV V++ GL +P GLA+DW+ +KLYWTDS
Sbjct: 122 DFHHRRELVFWSDVTLDRILRANLNGSNV---EEVVSTGLESPGGLAVDWVHDKLYWTDS 178
Query: 137 ETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG 196
T+++EV++LDG RKVL W+ +++PRAIA + + +YWTD G
Sbjct: 179 GTSRIEVANLDGAHRKVLLWQSLEKPRAIA----------------LHPMEGTIYWTDWG 222
Query: 197 -TDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGER 255
T RIE ++G+ R+++ +T L P +T+ A ++W D IER+ L+G R
Sbjct: 223 NTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV--IERANLDGSHR 280
Query: 256 VLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLL 315
++ L P IT V + LYW D T I + +E+I L I L
Sbjct: 281 KAVISQGLPHPFAIT--VFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTL 338
Query: 316 GDYVYWTDWQRRSID 330
R +
Sbjct: 339 HPQRQPAGKNRCGDN 353
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386 | Back alignment and structure |
|---|
Score = 86.0 bits (212), Expect = 6e-19
Identities = 48/209 (22%), Positives = 85/209 (40%), Gaps = 32/209 (15%)
Query: 47 ATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTE-MISCCTFDGNNV 105
+ + I +ANL + V + + LE+ AI + + + WTD G I + DG+
Sbjct: 178 SGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG- 236
Query: 106 GSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAI 165
+ + L P+GL ID+ ++YW D++ + +E ++LDG RK + + + P AI
Sbjct: 237 --RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAI 294
Query: 166 ASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVC-RLEGTHRKVLVNTDLVEPRAI 224
++ +LYWTD T I + G +++++ N
Sbjct: 295 TVFE------------------DSLYWTDWHTKSINSANKFTGKNQEIIRN--------- 327
Query: 225 TLSPAHGYLFWSDWNEKRPKIERSLLNGG 253
L + K NGG
Sbjct: 328 KLHFPMDIHTLHPQRQPAGKNRCGDNNGG 356
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316 | Back alignment and structure |
|---|
Score = 241 bits (616), Expect = 4e-78
Identities = 77/242 (31%), Positives = 128/242 (52%), Gaps = 15/242 (6%)
Query: 106 GSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAI 165
S++ + L L + + ++YW+D + + LD Y I +
Sbjct: 19 RSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR---- 74
Query: 166 ASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAIT 225
+++ PDG+AVDW+ N+YWTD+ + V +G RK L + +PRAI
Sbjct: 75 --------DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIV 126
Query: 226 LSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKT 285
+ P HG+++W+DW KI++ LNG + LV + + WPNGITLD+ + +LYW D+K
Sbjct: 127 VDPVHGFMYWTDWGTP-AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL 185
Query: 286 DKIEMIDFDGNNRRELI--NENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVI 343
I ID +G NR+ ++ + L H F +++ D V+WTD +I N++TG+D ++
Sbjct: 186 HSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLL 245
Query: 344 IE 345
E
Sbjct: 246 AE 247
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 4e-09
Identities = 16/117 (13%), Positives = 40/117 (34%), Gaps = 3/117 (2%)
Query: 52 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV 111
I+ L+ + ++++ I + W D IS +G N +
Sbjct: 145 IKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR---KTI 201
Query: 112 ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASY 168
+ + ++ +K++WTD + ++ L E++ P + +
Sbjct: 202 LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLF 258
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400 | Back alignment and structure |
|---|
Score = 242 bits (619), Expect = 2e-77
Identities = 77/262 (29%), Positives = 130/262 (49%), Gaps = 17/262 (6%)
Query: 86 CWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSS 145
T + S++ + L L + + ++YW+D + +
Sbjct: 83 IAYLFFTNRHEVRKMTLDR--SEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQ 140
Query: 146 LDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRL 205
LD + + S +++ PDG+AVDW+ N+YWTD+ + V
Sbjct: 141 LDR-------AHGVSSYDTVISR-----DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 188
Query: 206 EGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGW 265
+G RK L + +PRAI + P HG+++W+DW KI++ LNG + LV + + W
Sbjct: 189 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT-PAKIKKGGLNGVDIYSLVTENIQW 247
Query: 266 PNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELI--NENLPHVFGISLLGDYVYWTD 323
PNGITLD+ + +LYW D+K I ID +G NR+ ++ + L H F +++ D V+WTD
Sbjct: 248 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 307
Query: 324 WQRRSIDRVNKITGNDREVIIE 345
+I N++TG+D ++ E
Sbjct: 308 IINEAIFSANRLTGSDVNLLAE 329
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 6e-08
Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 5/93 (5%)
Query: 73 GAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLY 132
G +D + + W D IS +G N ++ + ++ +K++
Sbjct: 250 GITLDLLSGR--LYWVDSKLHSISSIDVNGGNR---KTILEDEKRLAHPFSLAVFEDKVF 304
Query: 133 WTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAI 165
WTD + ++ L E++ P +
Sbjct: 305 WTDIINEAIFSANRLTGSDVNLLAENLLSPEDM 337
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318 | Back alignment and structure |
|---|
Score = 236 bits (603), Expect = 4e-76
Identities = 85/246 (34%), Positives = 130/246 (52%), Gaps = 16/246 (6%)
Query: 100 FDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDI 159
D N ++ GL + + +YW+D ++ + + +
Sbjct: 18 VDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ------ 71
Query: 160 DQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLV 219
+ + PDG+A DW+ LYWTD+ T+RIEV L+G+ RKVL +L
Sbjct: 72 ---------NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELD 122
Query: 220 EPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLY 279
+PRAI L P+ G+++W+DW E PKIER+ ++G R +++ + WPNG+TLD + +KLY
Sbjct: 123 QPRAIALDPSSGFMYWTDWGE-VPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLY 181
Query: 280 WCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGND 339
W DAK + I + DG NR+ ++ +LPH F ++L D +YWTDW SI NK TG
Sbjct: 182 WADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEG 241
Query: 340 REVIIE 345
I
Sbjct: 242 LREIHS 247
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 3e-07
Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 5/117 (4%)
Query: 52 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV 111
I A + + + I ++ + Y++ + W D I DG N V
Sbjct: 147 IERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR---QAV 203
Query: 112 ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASY 168
+ L P L + + LYWTD T+ + + + DI P I ++
Sbjct: 204 VKGSLPHPFALTLF--EDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAF 258
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349 | Back alignment and structure |
|---|
Score = 235 bits (599), Expect = 3e-75
Identities = 88/261 (33%), Positives = 138/261 (52%), Gaps = 21/261 (8%)
Query: 86 CWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSS 145
I + + ++ N L L E ++W+D +++ ++
Sbjct: 46 VLLFANRIDIRQVLPHRSE----YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRAN 101
Query: 146 LDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRL 205
L+G + + ++ P G+AVDWV LYWTD+GT RIEV L
Sbjct: 102 LNGSNVEEVVSTGLE----------------SPGGLAVDWVHDKLYWTDSGTSRIEVANL 145
Query: 206 EGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGW 265
+G HRKVL+ L +PRAI L P G ++W+DW P+IE S ++G R ++ L W
Sbjct: 146 DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN-TPRIEASSMDGSGRRIIADTHLFW 204
Query: 266 PNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQ 325
PNG+T+D ++YW DAK IE + DG++R+ +I++ LPH F I++ D +YWTDW
Sbjct: 205 PNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWH 264
Query: 326 RRSIDRVNKITGNDREVIIER 346
+SI+ NK TG ++E+I +
Sbjct: 265 TKSINSANKFTGKNQEIIRNK 285
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349 | Back alignment and structure |
|---|
Score = 179 bits (454), Expect = 1e-53
Identities = 91/283 (32%), Positives = 144/283 (50%), Gaps = 25/283 (8%)
Query: 43 MLLFATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDG 102
+LLFA DIR R + ++ +LE A+D+++++ +V W+D + I +G
Sbjct: 46 VLLFANRIDIRQVLPHRS-EYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNG 104
Query: 103 NNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQP 162
+NV V++ GL +P GLA+DW+ +KLYWTDS T+++EV++LDG RKVL W+ +++P
Sbjct: 105 SNV---EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKP 161
Query: 163 RAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG-TDRIEVCRLEGTHRKVLVNTDLVEP 221
RAIA + + +YWTD G T RIE ++G+ R+++ +T L P
Sbjct: 162 RAIA----------------LHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWP 205
Query: 222 RAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWC 281
+T+ A ++W D IER+ L+G R ++ L P IT V + LYW
Sbjct: 206 NGLTIDYAGRRMYWVDAKHHV--IERANLDGSHRKAVISQGLPHPFAIT--VFEDSLYWT 261
Query: 282 DAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDW 324
D T I + +E+I L I L
Sbjct: 262 DWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGK 304
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 232 bits (591), Expect = 6e-71
Identities = 68/261 (26%), Positives = 120/261 (45%), Gaps = 11/261 (4%)
Query: 86 CWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSS 145
I+ D + + L + D L ++LYW DS N + +
Sbjct: 310 FLLFSQKSAINRMVIDEQQ-SPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQ 368
Query: 146 LDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRL 205
DG + + + S P +++D +R +YWT T+ I V RL
Sbjct: 369 EDGSQGFTV----------VVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRL 418
Query: 206 EGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGW 265
+G V++ + PRA+ ++P GY+++++ E+ PKIER+ L+G ER +L L
Sbjct: 419 DGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSK 478
Query: 266 PNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQ 325
P + LD KL+W D+ +IE D G NR L + N+ G+++ +++YW D Q
Sbjct: 479 PIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVFENWLYWIDKQ 538
Query: 326 RRSIDRVNKITGNDREVIIER 346
++ I++++ R + R
Sbjct: 539 QQMIEKIDMTGREGRTKVQAR 559
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 219 bits (558), Expect = 3e-66
Identities = 94/250 (37%), Positives = 146/250 (58%), Gaps = 21/250 (8%)
Query: 95 ISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVL 154
I + + NN + + G+ L D ++YWTD + + ++G + +
Sbjct: 17 IRRISLETNN--NNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHV 74
Query: 155 YWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLV 214
+++P+G+AVDW+ +NLYW DTGT+RIEV +L+G HR+VLV
Sbjct: 75 V----------------EFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLV 118
Query: 215 NTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVD 274
DL PRA+ L PA G+++W++W +PKI+R+ ++G ER LV + +G NG+T+D
Sbjct: 119 WKDLDSPRALALDPAEGFMYWTEWGG-KPKIDRAAMDGSERTTLVPN-VGRANGLTIDYA 176
Query: 275 NEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNK 334
+LYW D T+ IE + G NR +I ++LPH FG++ DY+YWTDW RRSI+R NK
Sbjct: 177 KRRLYWTDLDTNLIESSNMLGLNRE-VIADDLPHPFGLTQYQDYIYWTDWSRRSIERANK 235
Query: 335 ITGNDREVII 344
+G +R +I
Sbjct: 236 TSGQNRTIIQ 245
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 178 bits (453), Expect = 5e-51
Identities = 79/274 (28%), Positives = 115/274 (41%), Gaps = 27/274 (9%)
Query: 46 FATSKDIRIANLSRPLKPVTI--IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGN 103
F+ I + P I I L AIDY + W D MI DG+
Sbjct: 313 FSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGS 372
Query: 104 N---VGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDID 160
V N I P L+ID + +YWT TN + V+ LDG+ V+ + D
Sbjct: 373 QGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQD 432
Query: 161 QPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTD--RIEVCRLEGTHRKVLVNTDL 218
+PRA+ V+ +Y+T+ +IE L+GT R+VL + L
Sbjct: 433 RPRAVV----------------VNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGL 476
Query: 219 VEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKL 278
+P A+ L G LFW+D + +R IE S L+G R++L + P + L V L
Sbjct: 477 SKPIALALDSRLGKLFWADSDLRR--IESSDLSGANRIVLEDSNILQP--VGLTVFENWL 532
Query: 279 YWCDAKTDKIEMIDFDGNNRRELINENLPHVFGI 312
YW D + IE ID G R + + + I
Sbjct: 533 YWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDI 566
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 6e-25
Identities = 63/349 (18%), Positives = 125/349 (35%), Gaps = 79/349 (22%)
Query: 52 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTE-MISCCTFDGNNVGSKHN 110
I ++ L + V + KDL+ A+ + + WT+ G + I DG+
Sbjct: 104 IEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER----T 159
Query: 111 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKL 170
+ + +GL ID+ +LYWTD +TN +E S++ G R+V+ +D+ P + Y+
Sbjct: 160 TLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVI-ADDLPHPFGLTQYQ- 217
Query: 171 PTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAH 230
+YWTD IE + ++ L I + +
Sbjct: 218 -----------------DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSS 260
Query: 231 GYLFWSD--------------------------------------------WNEKRPKIE 246
W++ ++ I
Sbjct: 261 RQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAIN 320
Query: 247 RSLLNGGER--VLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINE 304
R +++ + ++L L I D +++LYW D++ + I DG+ ++
Sbjct: 321 RMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVS 380
Query: 305 NLP------HVFGISL--LGDYVYWTDWQRRSIDRVNKITGNDREVIIE 345
++P + +S+ Y+YWT I+ + G V+++
Sbjct: 381 SVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTR-LDGRSVGVVLK 428
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 1e-07
Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 5/117 (4%)
Query: 52 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV 111
I A L + V L + A+ + + W D I G N + +
Sbjct: 458 IERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN---RIVL 514
Query: 112 ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASY 168
+ ++ P GL + LYW D + +E + G++ + I Q I +
Sbjct: 515 EDSNILQPVGLTVF--ENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAV 569
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 231 bits (589), Expect = 9e-71
Identities = 118/267 (44%), Positives = 157/267 (58%), Gaps = 18/267 (6%)
Query: 77 DYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDS 136
+ + + D + + + + + D + +YWTD
Sbjct: 310 KTCKDGATELLLLARRTDLRRISLDTPD-FTDIVLQLEDIRHAIAIDYDPVEGYIYWTDD 368
Query: 137 ETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG 196
E + S +DG + + I HPDG+AVDWVARNLYWTDTG
Sbjct: 369 EVRAIRRSFIDGSGSQFVVTAQIA----------------HPDGIAVDWVARNLYWTDTG 412
Query: 197 TDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERV 256
TDRIEV RL GT RK+L++ DL EPRAI L P GY++W+DW E PKIER+ L+G +RV
Sbjct: 413 TDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGE-IPKIERAALDGSDRV 471
Query: 257 LLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLG 316
+LV LGWPNG+ LD D K+YW DAKTDKIE+++ DG RR L+ + +PH+FG +LLG
Sbjct: 472 VLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLG 531
Query: 317 DYVYWTDWQRRSIDRVNKITGNDREVI 343
DYVYWTDWQRRSI+RV+K + +I
Sbjct: 532 DYVYWTDWQRRSIERVHKRSAEREVII 558
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 219 bits (559), Expect = 2e-66
Identities = 85/248 (34%), Positives = 130/248 (52%), Gaps = 16/248 (6%)
Query: 100 FDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDI 159
D N ++ GL + + +YW+D ++ + + +
Sbjct: 23 VDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ------ 76
Query: 160 DQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLV 219
+ + PDG+A DW+ LYWTD+ T+RIEV L+G+ RKVL +L
Sbjct: 77 ---------NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELD 127
Query: 220 EPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLY 279
+PRAI L P+ G+++W+DW E PKIER+ ++G R +++ + WPNG+TLD + +KLY
Sbjct: 128 QPRAIALDPSSGFMYWTDWGEV-PKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLY 186
Query: 280 WCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGND 339
W DAK + I + DG NR+ ++ +LPH F ++L D +YWTDW SI NK TG
Sbjct: 187 WADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEG 246
Query: 340 REVIIERS 347
I
Sbjct: 247 LREIHSDI 254
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 177 bits (449), Expect = 1e-50
Identities = 76/238 (31%), Positives = 119/238 (50%), Gaps = 24/238 (10%)
Query: 67 IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDW 126
++D+ AIDY + + WTD I DG+ V+T + PDG+A+DW
Sbjct: 345 LEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS---QFVVTAQIAHPDGIAVDW 401
Query: 127 LTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWV 186
+ LYWTD+ T+++EV+ L+G RK+L ED+++PRAI +D +
Sbjct: 402 VARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIV----------------LDPM 445
Query: 187 ARNLYWTDTG-TDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKI 245
+YWTD G +IE L+G+ R VLVNT L P + L G ++W D + I
Sbjct: 446 VGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDK--I 503
Query: 246 ERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELIN 303
E +G R +LV+D++ G T + + +YW D + IE + R +I+
Sbjct: 504 EVMNTDGTGRRVLVEDKIPHIFGFT--LLGDYVYWTDWQRRSIERVHKRSAEREVIID 559
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 124 bits (311), Expect = 2e-31
Identities = 75/332 (22%), Positives = 122/332 (36%), Gaps = 46/332 (13%)
Query: 52 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV 111
I A + + + I ++ + Y++ + W D I DG N V
Sbjct: 152 IERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR---QAV 208
Query: 112 ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLP 171
+ L P L + + LYWTD T+ + + + DI P I ++
Sbjct: 209 VKGSLPHPFALTLF--EDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQ 266
Query: 172 TIEVEH----------------------------------PDGVAVDWVARNLYWTDTGT 197
+G A L T
Sbjct: 267 RQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRT 326
Query: 198 DRIEVCRLEGTHRKV-LVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERV 256
D + + L D+ AI P GY++W+D + I RS ++G
Sbjct: 327 DLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRA--IRRSFIDGSGSQ 384
Query: 257 LLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISL-- 314
+V ++ P+GI +D LYW D TD+IE+ +G R+ LI+E+L I L
Sbjct: 385 FVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDP 444
Query: 315 LGDYVYWTDW-QRRSIDRVNKITGNDREVIIE 345
+ Y+YWTDW + I+R + G+DR V++
Sbjct: 445 MVGYMYWTDWGEIPKIERAA-LDGSDRVVLVN 475
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 106 bits (265), Expect = 2e-25
Identities = 67/345 (19%), Positives = 123/345 (35%), Gaps = 74/345 (21%)
Query: 52 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEM-ISCCTFDGNNVGSKHN 110
I ++NL L+ V ++L++ AI + WTD G I DG++
Sbjct: 108 IEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR---FI 164
Query: 111 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKL 170
+I + + P+GL +D+ +KLYW D++ N + S+LDG R+ + + P A+ ++
Sbjct: 165 IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE- 223
Query: 171 PTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAH 230
LYWTD T I C +++D+ P I
Sbjct: 224 -----------------DILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQ 266
Query: 231 GYLFWSDWNEK-----------------------------------------------RP 243
++ R
Sbjct: 267 RQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRT 326
Query: 244 KIERSLLNGGE--RVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRREL 301
+ R L+ + ++L + + I D +YW D + I DG+ + +
Sbjct: 327 DLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFV 386
Query: 302 INENLPHVFGISL--LGDYVYWTDWQRRSIDRVNKITGNDREVII 344
+ + H GI++ + +YWTD I+ + G R+++I
Sbjct: 387 VTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTR-LNGTMRKILI 430
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 5e-07
Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 5/103 (4%)
Query: 52 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV 111
I A L + V + L + Y + + W D T+ I DG +
Sbjct: 460 IERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGR---RVL 516
Query: 112 ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVL 154
+ + + G + + +YWTD + +E +R+V+
Sbjct: 517 VEDKIPHIFGFTLL--GDYVYWTDWQRRSIERVHKRSAEREVI 557
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 5e-33
Identities = 38/287 (13%), Positives = 88/287 (30%), Gaps = 41/287 (14%)
Query: 65 TIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNG-----LITP 119
+ I L A+ K+ V + + + I+ TF + S + NG L
Sbjct: 47 SNIHKLSNDTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD 106
Query: 120 DGLAIDWLTEKLYWT---DSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVE 176
+ + +Y+ L +DG+++K + +
Sbjct: 107 PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKI---------------------K 145
Query: 177 HPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWS 236
+ + R Y+ + ++ + + + +P + +++
Sbjct: 146 NHYLFTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCYKPVVL----DDTNVYYM 201
Query: 237 DWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGN 296
D N I +N V+L + + N + Y + ++ DG
Sbjct: 202 DVNRD-NAIVHVNINNPNPVVLTEANIEHYNV----YGSLIFYQRGGDNPALCVVKNDGT 256
Query: 297 NRRELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVI 343
+EL I++ YVY+TD+ + + + +
Sbjct: 257 GFKELAKGE---FCNINVTSQYVYFTDFVSNKEYCTSTQNPDTIKAL 300
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302 | Back alignment and structure |
|---|
Score = 77.8 bits (191), Expect = 2e-16
Identities = 25/243 (10%), Positives = 65/243 (26%), Gaps = 43/243 (17%)
Query: 65 TIIKDLEEGAAIDYYYKKSMVCWTDHGTEM---ISCCTFDGNNVGSKHNVITNGLITPDG 121
L+ I + + + + T+ + DG +
Sbjct: 98 HGSTVLDPDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKK--------IKNHYL 149
Query: 122 LAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGV 181
+ Y+ + + +L + + Y + +P +
Sbjct: 150 FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCYKPVVLDD-------------- 195
Query: 182 AVDWVARNLYWTDTGTD-RIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNE 240
N+Y+ D D I + + VL ++ + +F+
Sbjct: 196 ------TNVYYMDVNRDNAIVHVNINNPNPVVLTEANIEHY-----NVYGSLIFYQR-GG 243
Query: 241 KRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRE 300
P + +G L K ++V ++ +Y+ D ++K + +
Sbjct: 244 DNPALCVVKNDGTGFKELAKG-----EFCNINVTSQYVYFTDFVSNKEYCTSTQNPDTIK 298
Query: 301 LIN 303
+
Sbjct: 299 ALQ 301
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302 | Back alignment and structure |
|---|
Score = 71.3 bits (174), Expect = 4e-14
Identities = 34/258 (13%), Positives = 79/258 (30%), Gaps = 48/258 (18%)
Query: 102 GNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSE-TNKLEVSSLDGKKRKVLYWEDID 160
GN G+ +N GL +++++++ +L ++DG
Sbjct: 9 GNTAGNLYN---AGLFCESD-------GEVFFSNTNDNGRLYAMNIDGSNIH-------- 50
Query: 161 QPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVL--VNTD- 217
KL + ++ +Y+ +I R L + +
Sbjct: 51 --------KLSNDTAMY-----INADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG 97
Query: 218 -----LVEPRAITLSPAHGYLFWSDWN-EKRPKIERSLLNGGERVLLVKDRLGWPNGITL 271
L I S Y+++ ++ + + R ++G E+ + T
Sbjct: 98 HGSTVLDPDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNH-----YLFTC 152
Query: 272 DVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQRRSIDR 331
+ + Y+ + K ++ D + + N + VY+ D R +
Sbjct: 153 NTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCYKPVVLD--DTNVYYMDVNRDNAIV 210
Query: 332 VNKITGNDREVIIERSCT 349
I + V+ E +
Sbjct: 211 HVNINNPNPVVLTEANIE 228
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302 | Back alignment and structure |
|---|
Score = 68.6 bits (167), Expect = 3e-13
Identities = 31/249 (12%), Positives = 80/249 (32%), Gaps = 26/249 (10%)
Query: 106 GSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAI 165
GS + ++N I+ +Y+ + K+ + R L +
Sbjct: 46 GSNIHKLSNDTAM----YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGH--- 98
Query: 166 ASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAIT 225
+ + + +++ L++ + R++G +K + N T
Sbjct: 99 -GSTVLDPDPCIYASLIGNYIYY-LHYDTQTATSLYRIRIDGEEKKKIKNHY-----LFT 151
Query: 226 LSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKT 285
+ + Y ++++ + + R L P + +D+ +Y+ D
Sbjct: 152 CNTSDRYFYYNNPKNGQ--LYRYDTASQSEALFYDCNCYKP----VVLDDTNVYYMDVNR 205
Query: 286 D-KIEMIDFDGNNRRELINENLPHVFGISLLGDYV-YWTDWQRRSIDRVNKITGNDREVI 343
D I ++ + N L N+ H ++ G + Y ++ V G + +
Sbjct: 206 DNAIVHVNINNPNPVVLTEANIEH---YNVYGSLIFYQRGGDNPALCVVK-NDGTGFKEL 261
Query: 344 IERSCTGVT 352
+ +
Sbjct: 262 AKGEFCNIN 270
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 4e-14
Identities = 44/240 (18%), Positives = 90/240 (37%), Gaps = 26/240 (10%)
Query: 100 FDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDI 159
+ G+ + NGL P GLA+D +Y TD + +++ + +
Sbjct: 51 LATGSTGTT-VLPFNGLYQPQGLAVD-GAGTVYVTDFNNRVVTLAAGSNNQTVL------ 102
Query: 160 DQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLV 219
P + +P+G+AVD +Y D G +R+ + VL T L
Sbjct: 103 -----------PFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLN 150
Query: 220 EPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLY 279
+P + + + G ++ +D + R + + +V+L + P GI +D +Y
Sbjct: 151 DPDGVAVDNS-GNVYVTDTDNNR--VVKLEAESNNQVVLPFTDITAPWGIAVDEAGT-VY 206
Query: 280 WCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGD-YVYWTDWQRRSIDRVNKITGN 338
+ T+++ + L L +++ D VY D + ++ +
Sbjct: 207 VTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS-LEH 265
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 2e-13
Identities = 48/209 (22%), Positives = 84/209 (40%), Gaps = 26/209 (12%)
Query: 88 TDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD 147
TD +++ N + +GL P+GLA+D +Y D N++ +
Sbjct: 83 TDFNNRVVTLAAGSNNQTV----LPFDGLNYPEGLAVD-TQGAVYVADRGNNRVVKLAAG 137
Query: 148 GKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEG 207
K + V + L PDGVAVD + N+Y TDT +R+ E
Sbjct: 138 SKTQTV-----------LPFTGL-----NDPDGVAVD-NSGNVYVTDTDNNRVVKLEAES 180
Query: 208 THRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPN 267
++ VL TD+ P I + A G ++ ++ N + + + L +L L P
Sbjct: 181 NNQVVLPFTDITAPWGIAVDEA-GTVYVTEHNTNQ--VVKLLAGSTTSTVLPFTGLNTPL 237
Query: 268 GITLDVDNEKLYWCDAKTDKIEMIDFDGN 296
+ +D D +Y D D++ + +
Sbjct: 238 AVAVDSDR-TVYVADRGNDRVVKLTSLEH 265
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 9e-14
Identities = 44/216 (20%), Positives = 86/216 (39%), Gaps = 23/216 (10%)
Query: 119 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHP 178
P G+ + K++ T + N + +LDGK I Y LPT
Sbjct: 17 PYGITVS-DKGKVWITQHKANMISCINLDGK---------------ITEYPLPT-PDAKV 59
Query: 179 DGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDW 238
+ + +++T+ ++I +G ++ + P IT P G +++++
Sbjct: 60 MCLTIS-SDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPN-GDIWFTEM 117
Query: 239 NEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNR 298
N R I R +G R + ++ +P+ ITL DN L++ + + + I I G+
Sbjct: 118 NGNR--IGRITDDGKIREYELPNKGSYPSFITLGSDN-ALWFTENQNNAIGRITESGDIT 174
Query: 299 RELINENLPHVFGISLLGD-YVYWTDWQRRSIDRVN 333
I GI+ D +++ + I R+
Sbjct: 175 EFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRIT 210
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 1e-13
Identities = 42/256 (16%), Positives = 82/256 (32%), Gaps = 29/256 (11%)
Query: 87 WTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSL 146
+T++ I T G K + N P G+ +++T+ N++ +
Sbjct: 72 FTENAANKIGRITKKGI---IKEYTLPNPDSAPYGITEG-PNGDIWFTEMNGNRIGRITD 127
Query: 147 DGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLE 206
DGK R+ P I D L++T+ + I
Sbjct: 128 DGKIREYELPNKGSYPSFITL---------GSDN--------ALWFTENQNNAIGRITES 170
Query: 207 GTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWP 266
G + + T P IT L++ + + I R +G + P
Sbjct: 171 GDITEFKIPTPASGPVGITKGND-DALWFVEIIGNK--IGRITTSGEITEFKIPTPNARP 227
Query: 267 NGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQR 326
+ IT L++ + +KI + + I GI G+ +++
Sbjct: 228 HAITAGAGI-DLWFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICFDGETIWFAM--- 283
Query: 327 RSIDRVNKITGNDREV 342
D++ K+T +
Sbjct: 284 -ECDKIGKLTLIKDNM 298
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 1e-13
Identities = 39/216 (18%), Positives = 82/216 (37%), Gaps = 23/216 (10%)
Query: 119 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHP 178
P G+ K+++T + NK+ G+ I +++PT
Sbjct: 22 PYGITSS-EDGKVWFTQHKANKISSLDQSGR---------------IKEFEVPT-PDAKV 64
Query: 179 DGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDW 238
+ V ++++T+ G ++I +G + + P IT G ++++
Sbjct: 65 MCLIVS-SLGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLN-GDIWFTQL 122
Query: 239 NEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNR 298
N R I + +G + ++ +P ITL DN L++ + + + I I G
Sbjct: 123 NGDR--IGKLTADGTIYEYDLPNKGSYPAFITLGSDN-ALWFTENQNNSIGRITNTGKLE 179
Query: 299 RELINENLPHVFGISLLGD-YVYWTDWQRRSIDRVN 333
+ N GI+ D +++ + I R+
Sbjct: 180 EYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRIT 215
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 9e-12
Identities = 38/248 (15%), Positives = 82/248 (33%), Gaps = 28/248 (11%)
Query: 87 WTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSL 146
+T++G I + G + P G+ L +++T +++ +
Sbjct: 77 FTENGANKIGKLSKKGGFTEYP---LPQPDSGPYGITEG-LNGDIWFTQLNGDRIGKLTA 132
Query: 147 DGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLE 206
DG + P I D L++T+ + I
Sbjct: 133 DGTIYEYDLPNKGSYPAFIT---------LGSDN--------ALWFTENQNNSIGRITNT 175
Query: 207 GTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWP 266
G + + T+ P IT G L++ + + I R G + P
Sbjct: 176 GKLEEYPLPTNAAAPVGITSGND-GALWFVEIMGNK--IGRITTTGEISEYDIPTPNARP 232
Query: 267 NGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGD-YVYWTDWQ 325
+ IT ++ ++++ + ++I I D + + GI+ D V++
Sbjct: 233 HAITAGKNS-EIWFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITFGKDGSVWFALKC 291
Query: 326 RRSIDRVN 333
+ I ++N
Sbjct: 292 K--IGKLN 297
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306 | Back alignment and structure |
|---|
Score = 56.9 bits (137), Expect = 2e-09
Identities = 22/165 (13%), Positives = 52/165 (31%), Gaps = 14/165 (8%)
Query: 178 PDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSD 237
+ +A ++ T+ I +G + + + + +
Sbjct: 34 LENLASA-PDGTIFVTNHEVGEIVSITPDGNQQIHATVEG--KVSGLAFTSNGDLVATGW 90
Query: 238 WNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNN 297
+ P + +G LL + NGIT D + D+ I +ID +
Sbjct: 91 NADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPS 149
Query: 298 RRELI----------NENLPHVFGISLLGDYVYWTDWQRRSIDRV 332
+ P G+ G+++Y ++ ++ + R+
Sbjct: 150 GSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRI 194
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Length = 391 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 3e-07
Identities = 42/236 (17%), Positives = 82/236 (34%), Gaps = 43/236 (18%)
Query: 119 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEV-EH 177
P G I K+Y ++ +N + + +D V + T+
Sbjct: 34 PMGAVISPDGTKVYVANAHSNDVSI--IDTATNNV----------------IATVPAGSS 75
Query: 178 PDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDL-VEPRAITLSPAHGYLFWS 236
P GVAV + +Y T+ + + V ++ T V P + LSP L+ +
Sbjct: 76 PQGVAVSPDGKQVYVTNMASSTLSV--IDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVT 133
Query: 237 DWNE--------KRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKI 288
+ + + ++ G P GI + D K+Y + + I
Sbjct: 134 NNGDKTVSVINTVTKAVINTVSVGRS-----------PKGIAVTPDGTKVYVANFDSMSI 182
Query: 289 EMIDFDGNNRRELIN-ENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVI 343
+ID N+ + + E P ++ G Y T+ + + V+ I ++
Sbjct: 183 SVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTN-VDKYFNTVSMIDTGTNKIT 237
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Length = 391 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 2e-05
Identities = 27/176 (15%), Positives = 65/176 (36%), Gaps = 13/176 (7%)
Query: 172 TIEV-EHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDL-VEPRAITLSPA 229
TI V +P G + +Y + ++ + + ++ V+ P+ + +SP
Sbjct: 27 TIPVGSNPMGAVISPDGTKVYVANAHSNDVSI--IDTATNNVIATVPAGSSPQGVAVSPD 84
Query: 230 HGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLG-WPNGITLDVDNEKLYWCDAKTDKI 288
++ ++ + S+++ + + G P G+ L D +KLY + +
Sbjct: 85 GKQVYVTNMASST--L--SVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTV 140
Query: 289 EMIDFDGNNRRELIN-ENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVI 343
+I+ ++ P ++ G VY ++ ++ I VI
Sbjct: 141 SVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDS---MSISVIDTVTNSVI 193
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Length = 391 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 6e-05
Identities = 40/208 (19%), Positives = 82/208 (39%), Gaps = 28/208 (13%)
Query: 118 TPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEV-E 176
+P GLA+ +KLY T++ VS ++ + V+ T+ V
Sbjct: 117 SPLGLALSPDGKKLYVTNNGDK--TVSVINTVTKAVIN----------------TVSVGR 158
Query: 177 HPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVL--VNTDLVEPRAITLSPAHGYLF 234
P G+AV +Y + + I V ++ V+ V + P I ++P +
Sbjct: 159 SPKGIAVTPDGTKVYVANFDSMSISV--IDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAY 215
Query: 235 WSDWNEKRPKIERSLLNGGERVLLVKDRLGW-PNGITLDVDNEKLYWCDAKTDKIEMIDF 293
++ ++ + S+++ G + + +G P GI + D +K+Y + + + +ID
Sbjct: 216 VTNVDKYFNTV--SMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDT 273
Query: 294 DGNNRRELIN-ENLPHVFGISLLGDYVY 320
N + P+ G + V
Sbjct: 274 ATNTITATMAVGKNPYASGQFIGSIPVQ 301
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Length = 331 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 2e-06
Identities = 24/207 (11%), Positives = 53/207 (25%), Gaps = 29/207 (14%)
Query: 117 ITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEV- 175
I+P+G L D + + ID + I
Sbjct: 135 ISPNG-------NGLILIDRSSAN------------TVRRFKIDADGVLFDTGQEFISGG 175
Query: 176 EHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLV--EPRAITLSPAHGYL 233
P + + + + I + + L+N P I +S +
Sbjct: 176 TRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTV 235
Query: 234 FWSDWNEKRPKI-------ERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTD 286
+ + + + G +L+ L N + L+ KL+ +
Sbjct: 236 YVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISR 295
Query: 287 KIEMIDFDGNNRRELINENLPHVFGIS 313
++++ G + I
Sbjct: 296 ELKVFTISGKVVGYVAGIEANGGIAIC 322
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Length = 331 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 26/231 (11%), Positives = 59/231 (25%), Gaps = 42/231 (18%)
Query: 117 ITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEV- 175
ITPD + + + S K K + TI +
Sbjct: 91 ITPDD-------QFAVTVTGLNHPFNMQSYSFLKNKFI----------------STIPIP 127
Query: 176 EHPDGVAVDWVARNLYWTD-TGTDRIEVCRLEGTHRKVLVNTDLVE----PRAITLSPAH 230
G+A+ L D + + + +++ + + P IT +P
Sbjct: 128 YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDG 187
Query: 231 GYLFWSDWNEKR-PKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIE 289
+ F ++ +E + V P I + D +Y T +
Sbjct: 188 NFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVF 246
Query: 290 MIDFDGNNRRELI-----------NENLPHVFGISLLGDYVYWTDWQRRSI 329
+ + + ++ ++ + R +
Sbjct: 247 NFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISREL 297
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 4e-06
Identities = 35/256 (13%), Positives = 71/256 (27%), Gaps = 38/256 (14%)
Query: 119 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEV--- 175
G+A+D L + + +S D K + I E+
Sbjct: 26 VSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS 84
Query: 176 ------EHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLV----------NTDLV 219
P G+++D N + TD ++ +L+
Sbjct: 85 SGKNLFYLPHGLSID-TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFC 143
Query: 220 EPRAITLSPAHGYLFWSDWN--------EKRPKIERSLLNGGERVLLVKDRLGWPNGITL 271
+P + + P+ G +F SD K + P+ + L
Sbjct: 144 QPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLAL 203
Query: 272 DVDNEKLYWCDAKTDKIEMIDFDGNNRRELINE--------NLPHVFGISLLGD-YVYWT 322
++L D + +I+ D I + ++ G + Y+
Sbjct: 204 VPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFG 263
Query: 323 DWQRRSIDRVNKITGN 338
D + +N +G
Sbjct: 264 DQEPVQGFVMNFSSGE 279
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 5e-04
Identities = 28/187 (14%), Positives = 60/187 (32%), Gaps = 17/187 (9%)
Query: 119 PDGLAIDWLTEKLYWTDSETN-KLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEH 177
P +A++ T ++ +D N ++ S GK E + +P
Sbjct: 145 PTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPH----- 199
Query: 178 PDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSD 237
+A+ L D RI+ + + + +S G+LF +
Sbjct: 200 --SLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVN 257
Query: 238 WN-----EKRPKIERSLLNGGERVLL---VKDRLGWPNGITLDVDNEKLYWCDAKTDKIE 289
++ + + GE + + V+ P+ I ++ +Y DA T+ +
Sbjct: 258 GKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVAS-EDGTVYIGDAHTNTVW 316
Query: 290 MIDFDGN 296
Sbjct: 317 KFTLTEK 323
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Length = 433 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 2e-05
Identities = 33/235 (14%), Positives = 74/235 (31%), Gaps = 28/235 (11%)
Query: 117 ITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEV- 175
+ +L+ + + N + V D K T+++
Sbjct: 169 LGFVETISIPEHNELWVSQMQANAVHV--FDLKTLAYKA----------------TVDLT 210
Query: 176 -EHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDL-VEPRAITLSPAHGYL 233
+ + D + +Y ++ ++ I V ++ + + TD PR + LS L
Sbjct: 211 GKWSKILLYDPIRDLVYCSNWISEDISV--IDRKTKLEIRKTDKIGLPRGLLLSKDGKEL 268
Query: 234 FWSDWNEKRPKIER---SLLNGGERVLLVKDRLG-WPNGITLDVDNEKLYWCDAKTDKIE 289
+ + ++ + + + + L+ I K+Y D KIE
Sbjct: 269 YIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIE 328
Query: 290 MIDFDGNNRRELIN-ENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVI 343
+ D ++ I + P+ +S G Y+Y + G +
Sbjct: 329 VYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKV 383
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Length = 433 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 1e-04
Identities = 37/196 (18%), Positives = 60/196 (30%), Gaps = 36/196 (18%)
Query: 118 TPDGLAIDWLTEKLYWTDSETNKLE-----VSSLDGKKRKVLYWEDIDQPRAIASYKLPT 172
P GL + ++LY + E + K K++ T
Sbjct: 255 LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLID----------------T 298
Query: 173 IEV-EHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDL-VEPRAITLSPAH 230
I + + +Y +D +IEV + +KV + + +P I LSP
Sbjct: 299 IGPPGNKRHIVSGNTENKIYVSDMCCSKIEV--YDLKEKKVQKSIPVFDKPNTIALSPDG 356
Query: 231 GYLFWSDWNEKRPKIERSLLNGGERVLLVKDRL-----------GWPNGITLDVDNEKLY 279
YL+ S P + V D P G+ + DN L
Sbjct: 357 KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLV 416
Query: 280 WCDAKTDKIEMIDFDG 295
D +I + DG
Sbjct: 417 ISDFLDHQIRVYRRDG 432
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 2e-05
Identities = 29/185 (15%), Positives = 73/185 (39%), Gaps = 22/185 (11%)
Query: 116 LITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEV 175
P G+A++ + D+ +++++ +G+ + ++
Sbjct: 29 FTEPSGVAVN-AQNDIIVADTNNHRIQIFDKEGRFK-----------FQFGECGKRDSQL 76
Query: 176 EHPDGVAVDWVARNLYWT-DTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLF 234
+P+ VAV + ++ T + T +I++ G + T L PR +T+ G +
Sbjct: 77 LYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDN-KGRII 135
Query: 235 WSDWNEKRPKI---ERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMI 291
+ R I ++L L +PNG+ ++ E ++ D + +++
Sbjct: 136 VVECKVMRVIIFDQNGNVL----HKFGCSKHLEFPNGVVVNDKQE-IFISDNRAHCVKVF 190
Query: 292 DFDGN 296
+++G
Sbjct: 191 NYEGQ 195
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 6e-05
Identities = 32/260 (12%), Positives = 66/260 (25%), Gaps = 44/260 (16%)
Query: 47 ATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVG 106
+ I K +T + + + + + + + F
Sbjct: 202 NDRPNNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT 261
Query: 107 SKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVL----------YW 156
+ Y + + S D K +++
Sbjct: 262 P--LFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAK 319
Query: 157 EDIDQPRAIASYKLPT--IEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLV 214
+ +D A P V++P + Y+ D I + +G V
Sbjct: 320 DWVDGVGKKARMHAPRQGTFVKNPAYKGSS-DEYDFYFCDRENHCIRILTPQGR-----V 373
Query: 215 NTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVD 274
T ++G ++D G L + R P GI D +
Sbjct: 374 TT-------FAGRGSNGTSGYND--------------GD---LRQEARFNHPEGIVYDEE 409
Query: 275 NEKLYWCDAKTDKIEMIDFD 294
E + D + +I I ++
Sbjct: 410 RECFFIGDRENRRIRKIGYE 429
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Length = 353 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 6e-05
Identities = 38/244 (15%), Positives = 74/244 (30%), Gaps = 39/244 (15%)
Query: 119 PDGLAIDWLTEKLYWTDSETNKLE----VSSLDGKKRKVLYWEDIDQPRAIASYKLPTIE 174
+A L+ S++ KL+ V LD +V I
Sbjct: 43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQ----------------AIH 86
Query: 175 V-EHPDGVAVDWVARNLYWTDTGTDRI---------EVCRLEGTHRKVLVNTDLVEPRAI 224
P G ++ + L++ +T + RL RK ++PR +
Sbjct: 87 NDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPREL 146
Query: 225 TLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAK 284
A ++ S K I + +++ G+ LD + ++LY +A
Sbjct: 147 VADDATNTVYISGI-GKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNAD 205
Query: 285 TDKIEMIDFDGNNRRELI---NENLPHVFGISLLGD--YVYWTDWQRRSIDRVNKITGND 339
+ I + D + ISL + TD + V + +
Sbjct: 206 GELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKA---AEVLVVDTRN 262
Query: 340 REVI 343
++
Sbjct: 263 GNIL 266
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Length = 353 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 7e-05
Identities = 36/232 (15%), Positives = 78/232 (33%), Gaps = 22/232 (9%)
Query: 119 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHP 178
+ L + D TN + +S + K V++ D + + + +
Sbjct: 133 KRTEEVRPLQPRELVADDATNTVYISGIG--KESVIWVVDGGNIKLKTAIQNTG---KMS 187
Query: 179 DGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVE------PRAITLSPAHGY 232
G+A+D + LY T+ + I + + K+L L++ I+L A
Sbjct: 188 TGLALDSEGKRLYTTNADGELITI---DTADNKILSRKKLLDDGKEHFFINISLDTARQR 244
Query: 233 LFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMID 292
F +D +++ +L K + + + Y + K+ +ID
Sbjct: 245 AFITDSKAAEV----LVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVID 300
Query: 293 FDGNNRRELIN-ENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVI 343
+ + P+ +S G +Y + Q+ + +VI
Sbjct: 301 AKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQK---STKQQEATQPDDVI 349
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Length = 353 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-05
Identities = 25/153 (16%), Positives = 52/153 (33%), Gaps = 21/153 (13%)
Query: 88 TDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD 147
T+ E+I+ T D + K + +++D ++ + TDS+ ++ V +D
Sbjct: 202 TNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLV--VD 259
Query: 148 GKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEG 207
+ +L + V + Y T ++ V ++
Sbjct: 260 TRNGNILA----------------KVAAPESLAVLFNPARNEAYVTHRQAGKVSV--IDA 301
Query: 208 THRKVLVNTDL-VEPRAITLSPAHGYLFWSDWN 239
KV+ D P ++ LS L+ S
Sbjct: 302 KSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ 334
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 40.2 bits (93), Expect = 9e-04
Identities = 56/363 (15%), Positives = 105/363 (28%), Gaps = 83/363 (22%)
Query: 12 KMMFITNTKWV--------NYIFLVVHFWYALSHHVAAQMLLFATSKDIRIANLSR---- 59
K++ T K V + H L+ L D R +L R
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS--LLLKYLDCRPQDLPREVLT 324
Query: 60 --PLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCC--TFDGNNVGSKHN----V 111
P + I + + +G A +K D T +I + +
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVN---CDKLTTIIESSLNVLEPAEY--RKMFDRLS 379
Query: 112 I--TNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSL---DGKKRKV----LYWEDIDQP 162
+ + I L++ W NKL SL K+ + +Y E +
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 163 --------RAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLV 214
+ Y +P + D + ++ + Y I G H K +
Sbjct: 440 ENEYALHRSIVDHYNIP--KTFDSDDLIPPYLDQYFYS------HI------GHHLKNIE 485
Query: 215 NTDLVEP-RAITLSPAHGYL-FWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLD 272
+ + + R + +L F + E+ KI ++ + L
Sbjct: 486 HPERMTLFRMV-------FLDF--RFLEQ--KIRHDSTAWNASGSIL-NTL-------QQ 526
Query: 273 VDNEKLYWCDAKTDKIEMI----DFDGNNRRELINENLPHVFGISLLGDYVYWTDWQRRS 328
+ K Y CD ++ DF LI + I+L+ + + +
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
Query: 329 IDR 331
+ R
Sbjct: 587 VQR 589
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 357 | |||
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 100.0 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 100.0 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 100.0 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 100.0 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 100.0 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 100.0 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 100.0 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 100.0 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 100.0 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 100.0 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 100.0 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 100.0 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 100.0 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 100.0 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 100.0 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 100.0 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 99.97 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 99.96 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 99.96 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 99.96 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.95 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 99.95 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 99.95 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.94 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 99.92 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.92 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.92 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 99.92 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 99.91 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.91 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.91 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.91 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.9 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.9 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.9 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.89 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.89 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.88 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 99.88 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.87 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.86 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.86 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.85 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.84 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.84 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 99.83 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 99.83 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.82 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.81 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.81 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.81 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.81 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.8 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.79 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.79 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.78 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 99.77 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 99.76 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.76 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.76 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.75 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.73 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 99.73 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 99.73 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.73 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.72 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.72 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.69 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.68 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.67 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.67 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.67 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.67 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 99.66 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 99.64 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 99.64 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.64 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.63 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.63 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.62 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 99.61 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 99.61 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.57 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.57 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.56 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.56 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.56 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 99.56 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.55 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.52 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.52 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.5 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 99.5 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.5 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 99.5 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.49 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 99.48 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.46 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.46 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.46 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.44 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 99.43 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 99.39 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.38 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.38 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.38 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 99.38 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.34 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.33 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.3 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.26 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 99.26 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.24 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.23 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 99.22 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.22 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.22 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.2 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 99.2 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.18 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.16 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.14 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.12 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.07 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.05 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.04 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.03 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.03 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 98.98 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 98.95 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 98.94 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 98.93 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 98.92 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 98.92 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 98.91 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 98.9 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 98.89 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 98.89 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 98.89 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 98.86 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 98.85 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 98.84 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.82 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 98.82 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 98.82 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 98.81 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.8 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 98.79 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 98.78 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 98.76 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 98.75 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 98.73 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 98.72 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 98.7 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 98.69 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 98.65 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 98.64 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 98.62 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 98.61 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 98.61 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 98.6 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 98.59 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 98.59 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 98.57 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 98.57 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 98.56 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 98.56 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 98.55 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 98.53 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 98.52 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.51 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 98.51 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 98.51 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 98.5 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 98.5 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 98.5 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 98.47 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 98.46 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 98.46 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 98.44 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 98.44 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 98.43 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 98.42 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 98.4 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 98.39 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 98.38 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 98.37 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 98.37 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 98.37 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 98.36 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 98.36 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.36 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 98.35 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 98.34 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 98.33 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 98.32 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 98.3 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 98.29 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 98.26 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 98.26 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 98.25 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 98.21 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 98.21 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 98.21 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.21 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 98.2 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 98.19 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 98.19 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 98.19 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 98.17 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 98.16 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 98.14 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 98.12 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 98.11 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 98.11 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.1 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.09 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 98.08 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 98.07 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 98.07 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 98.07 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.06 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 98.06 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.05 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.99 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 97.98 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 97.97 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.96 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 97.92 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.92 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 97.92 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 97.9 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 97.89 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 97.89 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 97.86 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 97.86 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 97.84 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 97.83 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 97.82 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 97.82 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 97.81 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 97.81 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 97.79 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 97.73 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 97.73 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 97.72 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 97.71 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 97.68 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 97.65 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 97.64 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 97.62 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 97.62 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 97.6 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 97.57 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 97.57 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 97.5 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 97.49 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.47 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 97.46 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.44 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 97.31 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 97.27 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 97.25 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.2 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 97.19 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.14 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 97.05 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 96.98 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.93 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 96.9 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 96.83 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 96.83 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 96.78 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.75 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 96.68 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 96.66 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 96.64 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 96.63 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 96.62 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 96.54 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 96.49 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 96.42 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 96.28 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 96.27 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 96.12 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 96.07 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 95.97 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 95.81 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 95.79 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 95.73 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 95.65 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 95.32 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 95.25 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 95.12 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 94.53 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 94.53 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 94.44 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 94.25 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 93.89 | |
| 1sqj_A | 789 | OXG-RCBH, oligoxyloglucan reducing-END-specific ce | 93.46 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 93.19 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 93.12 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 93.04 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 92.97 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 92.94 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 92.88 | |
| 2cn3_A | 737 | Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc | 92.74 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 92.58 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 92.5 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 92.28 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 92.15 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 92.14 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 91.83 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 91.71 | |
| 3a0f_A | 763 | Xyloglucanase; beta-propeller, hydrolase; 2.50A {G | 89.46 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 89.14 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 83.99 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 80.92 |
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-46 Score=372.13 Aligned_cols=314 Identities=55% Similarity=1.036 Sum_probs=274.1
Q ss_pred CCCCeEEEEEeCCcEEEEEcCCCC-cceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCc
Q psy13635 38 HVAAQMLLFATSKDIRIANLSRPL-KPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGL 116 (357)
Q Consensus 38 ~~~~~~l~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~ 116 (357)
+-..|.|+++++++|+++++++.. ...++++.+..|.||++++.++.|||+|..+++|++++++|+. ..+.++..++
T Consensus 6 ~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~--~~~~v~~~~~ 83 (619)
T 3s94_A 6 HHHAPLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE--SVQNVVVSGL 83 (619)
T ss_dssp ----CCEEEECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-------CEEEECSSC
T ss_pred cccCceEEEeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCC--ceEEEEeCCC
Confidence 345789999999999999998853 6778889999999999999999999999999999999999974 2356777888
Q ss_pred CCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeee------c---------------------
Q psy13635 117 ITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASY------K--------------------- 169 (357)
Q Consensus 117 ~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~------~--------------------- 169 (357)
..|.|||+||.+++|||+|...++|.+++++|+.++++....+..|++|++. +
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~ 163 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF 163 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE
Confidence 9999999999999999999999999999999999988888888899999881 0
Q ss_pred --------------------------------------------------------------------------------
Q psy13635 170 -------------------------------------------------------------------------------- 169 (357)
Q Consensus 170 -------------------------------------------------------------------------------- 169 (357)
T Consensus 164 ~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~t 243 (619)
T 3s94_A 164 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYT 243 (619)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSSEEEEECTTTCSEEEEESSS
T ss_pred EEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCCEEEEecCCCCEEEEEECCC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy13635 170 -------------------------------------------------------------------------------- 169 (357)
Q Consensus 170 -------------------------------------------------------------------------------- 169 (357)
T Consensus 244 g~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~ 323 (619)
T 3s94_A 244 GEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLA 323 (619)
T ss_dssp CCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEE
T ss_pred CcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEE
Confidence
Q ss_pred -------------------cC-------------------------------------------cccccCCceEEEeCCC
Q psy13635 170 -------------------LP-------------------------------------------TIEVEHPDGVAVDWVA 187 (357)
Q Consensus 170 -------------------~~-------------------------------------------~~~~~~p~glavD~~~ 187 (357)
+| ..++..|.|||+||.+
T Consensus 324 ~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~ 403 (619)
T 3s94_A 324 RRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVA 403 (619)
T ss_dssp ESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTT
T ss_pred cccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEeccc
Confidence 00 2345689999999999
Q ss_pred CeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCce
Q psy13635 188 RNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPN 267 (357)
Q Consensus 188 ~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~ 267 (357)
++|||+|.+.++|++++++|+.++++..+.+..|++|++||.+|.|||+|++.. ++|+++++||+.++.++...+.+|+
T Consensus 404 ~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~-~~I~r~~~dG~~~~~l~~~~l~~P~ 482 (619)
T 3s94_A 404 RNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEI-PKIERAALDGSDRVVLVNTSLGWPN 482 (619)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSS-CEEEEEETTSCSCEEEECSSCSCEE
T ss_pred CcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCC-CEEEEEccCCCccEEEEeCCCCCCe
Confidence 999999999999999999999988888888999999999999999999999864 7999999999999999888899999
Q ss_pred EEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEECCEEEEEeCCCCeEEEEeCccCceeEEEeccc
Q psy13635 268 GITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVIIERS 347 (357)
Q Consensus 268 giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~l 347 (357)
||++|+.+++|||+|.+.++|++++++|+.++.++...+.+|+||++++++|||||+.+++|+++++.+| ..+++..++
T Consensus 483 GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~P~glav~~~~ly~tD~~~~~I~~~~k~~g-~~~~~~~~~ 561 (619)
T 3s94_A 483 GLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSA-EREVIIDQL 561 (619)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCCCSSCCEEEETTEEEEECTTSSCEEEEESSSC-CEEEEECSC
T ss_pred eeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCCCCcEEEEEECCEEEEeecCCCeEEEEEcCCC-ceEEEecCC
Confidence 9999999999999999999999999999999888877899999999999999999999999999999888 668889999
Q ss_pred CCceeeee
Q psy13635 348 CTGVTRRR 355 (357)
Q Consensus 348 ~~p~~i~~ 355 (357)
.+|++|+-
T Consensus 562 ~~~~~i~~ 569 (619)
T 3s94_A 562 PDLMGLKA 569 (619)
T ss_dssp CCEEEEEE
T ss_pred CCCceeee
Confidence 99999974
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=353.64 Aligned_cols=318 Identities=27% Similarity=0.495 Sum_probs=275.8
Q ss_pred EEEEEeecCCCCeEEEEEe---CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcc
Q psy13635 30 HFWYALSHHVAAQMLLFAT---SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVG 106 (357)
Q Consensus 30 ~~~~~~~~~~~~~~l~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~ 106 (357)
.-+.+++..+....||+++ ...|.+++++|. ..+.+...+..|.||++|+.+++|||+|...+.|.+++++|+.
T Consensus 123 ~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~-~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~-- 199 (628)
T 4a0p_A 123 DSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGS-ERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLN-- 199 (628)
T ss_dssp CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--
T ss_pred CCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCC-ceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCc--
Confidence 3467788887788999998 457999999984 4555567899999999999999999999999999999999986
Q ss_pred eeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEc-CCCceEEEEecCCCCcceeeeec----------------
Q psy13635 107 SKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSL-DGKKRKVLYWEDIDQPRAIASYK---------------- 169 (357)
Q Consensus 107 ~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~-~g~~~~~~~~~~~~~p~~i~~~~---------------- 169 (357)
.+++...+..|.|||++ +++|||||..+++|.+++. .|+..+++ ..++..|.+|.++.
T Consensus 200 --~~v~~~~l~~P~glav~--~~~ly~tD~~~~~I~~~dk~tg~~~~~l-~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~ 274 (628)
T 4a0p_A 200 --REVIADDLPHPFGLTQY--QDYIYWTDWSRRSIERANKTSGQNRTII-QGHLDYVMDILVFHSSRQSGWNECASSNGH 274 (628)
T ss_dssp --CEEEEECCSCEEEEEEE--TTEEEEEETTTTEEEEEETTTCCSCEEE-ECSCCSCCEEEEECGGGSCCCCTTTTTGGG
T ss_pred --eEEeeccCCCceEEEEE--CCEEEEecCCCCEEEEEECCCCCceEEE-ecCCCCcceeeeeeecccccceEeccCCCC
Confidence 45677788999999999 5899999999999999995 56655544 34444555554410
Q ss_pred -----------------------------------------------------------cC-------------------
Q psy13635 170 -----------------------------------------------------------LP------------------- 171 (357)
Q Consensus 170 -----------------------------------------------------------~~------------------- 171 (357)
+|
T Consensus 275 C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~i 354 (628)
T 4a0p_A 275 CSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQL 354 (628)
T ss_dssp CSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEETTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEE
T ss_pred cchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeeccceEEEEecccccCceEEEEehhcCCceEEEEecCCCeE
Confidence 00
Q ss_pred ------------------------c------ccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCc
Q psy13635 172 ------------------------T------IEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEP 221 (357)
Q Consensus 172 ------------------------~------~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P 221 (357)
. ..+..|.|||+||.+++|||+|...++|++++++|+.++++....+..|
T Consensus 355 y~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~~~~~l~~~~l~~P 434 (628)
T 4a0p_A 355 YWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRP 434 (628)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCEEEEEEECTTCCE
T ss_pred EEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCCCeEEEEEeCCCCce
Confidence 1 1345799999999999999999999999999999999888888789999
Q ss_pred eEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEE
Q psy13635 222 RAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRREL 301 (357)
Q Consensus 222 ~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i 301 (357)
++|++||.+|.|||+|++...++|+++++||+.++.++...+.+|+||++|+.+++|||+|...++|++++++|++++.+
T Consensus 435 r~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~~~ 514 (628)
T 4a0p_A 435 RAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVL 514 (628)
T ss_dssp EEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred eeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceEEE
Confidence 99999999999999999864128999999999999999888999999999998999999999999999999999999988
Q ss_pred ecCCCCceEEEEEECCEEEEEeCCCCeEEEEeCccCceeEEEecccCCceeeee
Q psy13635 302 INENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVIIERSCTGVTRRR 355 (357)
Q Consensus 302 ~~~~~~~p~gia~~~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~i~~ 355 (357)
...++.+|+||++++++||||||.+++|+++++.+|+..+.+...+.+|++|+.
T Consensus 515 ~~~~~~~P~glav~~~~ly~tD~~~~~i~~~~k~~G~~~~~i~~~~~~~~~i~~ 568 (628)
T 4a0p_A 515 EDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHA 568 (628)
T ss_dssp ECSSCSCEEEEEEETTEEEEEETTTTEEEEEETTSSSCCEEEECCCTTEEEEEE
T ss_pred EcCCCCCcEEEEEECCEEEEEECCCCeEEEEECcCCCCcEEEeccCCCCcceEE
Confidence 877889999999999999999999999999999899999999999999999864
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-42 Score=315.78 Aligned_cols=256 Identities=39% Similarity=0.806 Sum_probs=215.8
Q ss_pred CCCCeEEEEEeCCcEEEEEcCCCC-cceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCc
Q psy13635 38 HVAAQMLLFATSKDIRIANLSRPL-KPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGL 116 (357)
Q Consensus 38 ~~~~~~l~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~ 116 (357)
++++|+|+|+++++|+++++++.. ..+++++++..+.++++|+.+++|||+|...+.|++++++|+. ..+.++..++
T Consensus 1 ~g~~p~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~--~~~~~~~~~l 78 (318)
T 3sov_A 1 AGSAPLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE--SVQNVVVSGL 78 (318)
T ss_dssp ---CCEEEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSS--CCCEEEEECC
T ss_pred CCCccEEEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCC--ceEEEEcCCC
Confidence 367899999999999999999854 5777888899999999999999999999999999999999874 1122333333
Q ss_pred CCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC
Q psy13635 117 ITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG 196 (357)
Q Consensus 117 ~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~ 196 (357)
. .|.|||+||.+++|||+|..
T Consensus 79 ~-----------------------------------------------------------~p~glavd~~~g~ly~~d~~ 99 (318)
T 3sov_A 79 L-----------------------------------------------------------SPDGLACDWLGEKLYWTDSE 99 (318)
T ss_dssp S-----------------------------------------------------------CCCEEEEETTTTEEEEEETT
T ss_pred C-----------------------------------------------------------CccEEEEEcCCCeEEEEECC
Confidence 3 45555555555666666666
Q ss_pred CCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCC
Q psy13635 197 TDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNE 276 (357)
Q Consensus 197 ~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~ 276 (357)
.++|++++++|..++++....+..|+||++||.+|+|||+|++.. ++|++++++|+.++.++..++..|+||++|+.++
T Consensus 100 ~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~-~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~ 178 (318)
T 3sov_A 100 TNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEV-PKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQ 178 (318)
T ss_dssp TTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSS-CEEEEEETTSCSCEEEECSSCSCEEEEEEETTTT
T ss_pred CCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCC-CEEEEEEcCCCCeEEEEECCCCCccEEEEeccCC
Confidence 666666666666666666567889999999998999999998743 7999999999999988888899999999999899
Q ss_pred EEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEECCEEEEEeCCCCeEEEEeCccCceeEEEecccCCceeeee
Q psy13635 277 KLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVIIERSCTGVTRRR 355 (357)
Q Consensus 277 ~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~i~~ 355 (357)
+|||+|...++|++++++|+.++.+....+.+|.||+++++.+||+|+.+++|.++++.+|+..+.+..++..|++|+-
T Consensus 179 ~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~P~~i~v 257 (318)
T 3sov_A 179 KLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHA 257 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECCCSSCCCEEE
T ss_pred EEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceEEEeCCCCCCcEEEE
Confidence 9999999999999999999999888876789999999999999999999999999999889999999999999999874
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-40 Score=313.00 Aligned_cols=256 Identities=33% Similarity=0.651 Sum_probs=213.7
Q ss_pred CCCeEEEEEeCCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCc-ceeEEEEeCCcC
Q psy13635 39 VAAQMLLFATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNV-GSKHNVITNGLI 117 (357)
Q Consensus 39 ~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~~~~~~ 117 (357)
++.|+|+++++++|+++++++ ...+.+++.+..|.+|++|+.+++|||+|...+.|++++++|... .....++..++.
T Consensus 81 ~~~~~ll~~~~~~I~~i~l~~-~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 159 (400)
T 3p5b_L 81 GSIAYLFFTNRHEVRKMTLDR-SEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 159 (400)
T ss_dssp TTSCEEEEEETTEEEEECTTS-CSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCS
T ss_pred cccceeEEeccceeEEEccCC-cceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCC
Confidence 468999999999999999988 567777889999999999999999999999999999999988520 011223333333
Q ss_pred CceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCC
Q psy13635 118 TPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGT 197 (357)
Q Consensus 118 ~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~ 197 (357)
.|.|||+||.+++|||+|...
T Consensus 160 -----------------------------------------------------------~p~glavD~~~~~lY~~d~~~ 180 (400)
T 3p5b_L 160 -----------------------------------------------------------APDGLAVDWIHSNIYWTDSVL 180 (400)
T ss_dssp -----------------------------------------------------------CEEEEEEETTTTEEEEEETTT
T ss_pred -----------------------------------------------------------CcccEEEEecCCceEEEECCC
Confidence 455555555566666666666
Q ss_pred CeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCE
Q psy13635 198 DRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEK 277 (357)
Q Consensus 198 ~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~ 277 (357)
++|++++++|..+++++...+..|++|++||..|+|||+|++.. ++|++++++|+.++.++..++.+|+||++|+.+++
T Consensus 181 ~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~-~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~ 259 (400)
T 3p5b_L 181 GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP-AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGR 259 (400)
T ss_dssp TEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSS-CCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTE
T ss_pred CeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCC-CEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCE
Confidence 66666667776666666667888999999999999999999853 69999999999999998888999999999999999
Q ss_pred EEEEeCCCCeEEEEeCCCCCeEEEecC--CCCceEEEEEECCEEEEEeCCCCeEEEEeCccCceeEEEecccCCceeeee
Q psy13635 278 LYWCDAKTDKIEMIDFDGNNRRELINE--NLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVIIERSCTGVTRRR 355 (357)
Q Consensus 278 lY~~d~~~~~I~~~~~dG~~~~~i~~~--~~~~p~gia~~~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~i~~ 355 (357)
|||+|...++|++++++|..++.++.. .+.+|.||++++++|||+||.+++|+++++.+|+..+.+..++..|++|+-
T Consensus 260 lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v 339 (400)
T 3p5b_L 260 LYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 339 (400)
T ss_dssp EEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEE
T ss_pred EEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEE
Confidence 999999999999999999998888753 578999999999999999999999999998899999999999999999864
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-40 Score=305.74 Aligned_cols=251 Identities=35% Similarity=0.728 Sum_probs=228.6
Q ss_pred CCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCC
Q psy13635 82 KSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQ 161 (357)
Q Consensus 82 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~ 161 (357)
+..|++++. ..|++++++|.. .+.+..++..|.|+++|+.++.|||+|...++|.+++++|+..+.+...
T Consensus 44 ~~~ll~~~~--~~I~~i~~~g~~----~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~---- 113 (349)
T 3v64_C 44 EPVLLFANR--IDIRQVLPHRSE----YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST---- 113 (349)
T ss_dssp CCEEEEECB--SCEEEECTTSCC----EEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS----
T ss_pred CceeEeecc--cceEEEeCCCCe----eEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC----
Confidence 567888865 469999999985 6667778899999999999999999999999999999999887776533
Q ss_pred cceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCC
Q psy13635 162 PRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEK 241 (357)
Q Consensus 162 p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~ 241 (357)
++..|.|||+||.+++|||+|...++|++++++|+.++.+....+..|++|++||.+|.|||+|++..
T Consensus 114 ------------~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~ 181 (349)
T 3v64_C 114 ------------GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNT 181 (349)
T ss_dssp ------------SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSS
T ss_pred ------------CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCC
Confidence 34589999999999999999999999999999999988888778899999999999999999999862
Q ss_pred CCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEECCEEEE
Q psy13635 242 RPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYW 321 (357)
Q Consensus 242 ~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~~~~ly~ 321 (357)
++|++++++|+.++.++..++..|+||++|+.+++|||+|...++|++++++|+.++.++...+.+|.||++++++|||
T Consensus 182 -~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~~~~ly~ 260 (349)
T 3v64_C 182 -PRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYW 260 (349)
T ss_dssp -CEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTEEEE
T ss_pred -CEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEECCEEEE
Confidence 6999999999999988878899999999999999999999999999999999999888887778999999999999999
Q ss_pred EeCCCCeEEEEeCccCceeEEEecccCCceeeee
Q psy13635 322 TDWQRRSIDRVNKITGNDREVIIERSCTGVTRRR 355 (357)
Q Consensus 322 td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~i~~ 355 (357)
+|+.+++|.++++.+|+..+.+..++..|++|+.
T Consensus 261 td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 294 (349)
T 3v64_C 261 TDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 294 (349)
T ss_dssp EETTTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred ecCCCCeEEEEEccCCCccEEeccCCCCCceEEE
Confidence 9999999999998899999999999999999874
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-39 Score=302.01 Aligned_cols=257 Identities=34% Similarity=0.640 Sum_probs=229.5
Q ss_pred EeecCCCCeEEEEEeCCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEe
Q psy13635 34 ALSHHVAAQMLLFATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT 113 (357)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~ 113 (357)
|.+.. ++++|++++.++|+++++++ ...+.+.+.+..|.++++|+.++.|||+|...+.|++++++|+. ...++.
T Consensus 38 C~~~~-~~~~ll~~~~~~I~~i~~~g-~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~---~~~~~~ 112 (349)
T 3v64_C 38 CKALG-PEPVLLFANRIDIRQVLPHR-SEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN---VEEVVS 112 (349)
T ss_dssp EEESS-SCCEEEEECBSCEEEECTTS-CCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEEC
T ss_pred ccccc-cCceeEeecccceEEEeCCC-CeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCC---ceEEEe
Confidence 34433 48999999999999999988 56777788999999999999999999999999999999999985 355667
Q ss_pred CCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEE
Q psy13635 114 NGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWT 193 (357)
Q Consensus 114 ~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~t 193 (357)
.++..|.|+|+||.+++|||+|...++|.+++++|..++.+... .+..|+|||+|+.++.|||+
T Consensus 113 ~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~----------------~l~~P~~iavdp~~g~ly~t 176 (349)
T 3v64_C 113 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ----------------SLEKPRAIALHPMEGTIYWT 176 (349)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECT----------------TCSCEEEEEEETTTTEEEEE
T ss_pred CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeC----------------CCCCcceEEEecCcCeEEEe
Confidence 78899999999999999999999999999999999988777633 34689999999999999999
Q ss_pred eCCC-CeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEe
Q psy13635 194 DTGT-DRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLD 272 (357)
Q Consensus 194 d~~~-~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid 272 (357)
|.+. ++|++++++|+.++.++...+..|+||++|+.+++|||+|+.. ++|++++++|+.++.++...+.+|.||+++
T Consensus 177 d~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~--~~I~~~~~dG~~~~~~~~~~~~~P~giav~ 254 (349)
T 3v64_C 177 DWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKH--HVIERANLDGSHRKAVISQGLPHPFAITVF 254 (349)
T ss_dssp ECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTT--TEEEEEETTSCSCEEEECSSCSSEEEEEEE
T ss_pred ccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCC--CEEEEEeCCCCceEEEEeCCCCCceEEEEE
Confidence 9998 8999999999988888777889999999999899999999985 599999999999988888889999999994
Q ss_pred cCCCEEEEEeCCCCeEEEEe-CCCCCeEEEecCCCCceEEEEEEC
Q psy13635 273 VDNEKLYWCDAKTDKIEMID-FDGNNRRELINENLPHVFGISLLG 316 (357)
Q Consensus 273 ~~~~~lY~~d~~~~~I~~~~-~dG~~~~~i~~~~~~~p~gia~~~ 316 (357)
+++|||+|+.+++|.+++ .+|...+.+. ..+..|.||+++.
T Consensus 255 --~~~ly~td~~~~~V~~~~~~~G~~~~~i~-~~~~~p~gi~v~~ 296 (349)
T 3v64_C 255 --EDSLYWTDWHTKSINSANKFTGKNQEIIR-NKLHFPMDIHTLH 296 (349)
T ss_dssp --TTEEEEEETTTTEEEEEETTTCCSCEEEE-CSCSCCCCEEEEC
T ss_pred --CCEEEEecCCCCeEEEEEccCCCccEEec-cCCCCCceEEEEc
Confidence 789999999999999999 6888887665 4688999999984
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-39 Score=296.12 Aligned_cols=254 Identities=33% Similarity=0.659 Sum_probs=209.9
Q ss_pred CeEEEEEeCCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcc-eeEEEEeCCcCCc
Q psy13635 41 AQMLLFATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVG-SKHNVITNGLITP 119 (357)
Q Consensus 41 ~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-~~~~~~~~~~~~p 119 (357)
+|+|+|+++++|+++|+++ .....+++.+..|.++++|+.+++|||+|...+.|++++++|.... ....++..++
T Consensus 1 ~~~ll~~~~~~I~~i~~~~-~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~--- 76 (316)
T 1ijq_A 1 IAYLFFTNRHEVRKMTLDR-SEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI--- 76 (316)
T ss_dssp CCEEEEECBSSEEEEETTS-CCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC---
T ss_pred CCEEEEECCCeEEEEECCC-cceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCC---
Confidence 4899999999999999988 4566677889999999999999999999999999999999873100 0111222222
Q ss_pred eeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCe
Q psy13635 120 DGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDR 199 (357)
Q Consensus 120 ~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~ 199 (357)
..|.|||+||.+++|||+|...++
T Consensus 77 --------------------------------------------------------~~p~glavd~~~~~ly~~d~~~~~ 100 (316)
T 1ijq_A 77 --------------------------------------------------------QAPDGLAVDWIHSNIYWTDSVLGT 100 (316)
T ss_dssp --------------------------------------------------------SCCCEEEEETTTTEEEEEETTTTE
T ss_pred --------------------------------------------------------CCcCEEEEeecCCeEEEEECCCCE
Confidence 256666666666667777766667
Q ss_pred EEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEE
Q psy13635 200 IEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLY 279 (357)
Q Consensus 200 I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY 279 (357)
|.+++++|+..+.+....+..|++|++||.+|+|||+|++.. ++|++++++|+.++.+....+..|+||++|+.+++||
T Consensus 101 I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~-~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY 179 (316)
T 1ijq_A 101 VSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP-AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLY 179 (316)
T ss_dssp EEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSS-CEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEE
T ss_pred EEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCC-CeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEE
Confidence 777777777666666656789999999998999999998852 6999999999999888877899999999999999999
Q ss_pred EEeCCCCeEEEEeCCCCCeEEEecC--CCCceEEEEEECCEEEEEeCCCCeEEEEeCccCceeEEEecccCCceeeee
Q psy13635 280 WCDAKTDKIEMIDFDGNNRRELINE--NLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVIIERSCTGVTRRR 355 (357)
Q Consensus 280 ~~d~~~~~I~~~~~dG~~~~~i~~~--~~~~p~gia~~~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~i~~ 355 (357)
|+|...++|++++++|+.++.+... .+.+|.||+++++++||+|+.+++|.++++.+|+..+.+..++..|++|+-
T Consensus 180 ~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~~~~~i~~~~~~p~~i~v 257 (316)
T 1ijq_A 180 WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 257 (316)
T ss_dssp EEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEE
T ss_pred EEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCcceEEEecCCCCceEEEE
Confidence 9999999999999999988877653 578999999999999999999999999999899999999999999999863
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=324.70 Aligned_cols=253 Identities=41% Similarity=0.788 Sum_probs=210.2
Q ss_pred CCCCeEEEEEeCCcEEEEEcCCCCc-ceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCc
Q psy13635 38 HVAAQMLLFATSKDIRIANLSRPLK-PVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGL 116 (357)
Q Consensus 38 ~~~~~~l~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~ 116 (357)
..+++||+|+++++|+++++++... ..+++..+..|.||+||+.+++|||+|..++.|++++++|+. .+.++..++
T Consensus 3 ~~p~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~---~~~v~~~g~ 79 (628)
T 4a0p_A 3 GVPEAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA---LEHVVEFGL 79 (628)
T ss_dssp --CCCEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEECSSC
T ss_pred CCCCcEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC---cEEEEeCCC
Confidence 4578999999999999999987433 223456788999999999999999999999999999999874 233444444
Q ss_pred CCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC
Q psy13635 117 ITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG 196 (357)
Q Consensus 117 ~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~ 196 (357)
.. |.|||+||.+++|||+|..
T Consensus 80 ~~-----------------------------------------------------------P~GlAvD~~~~~LY~tD~~ 100 (628)
T 4a0p_A 80 DY-----------------------------------------------------------PEGMAVDWLGKNLYWADTG 100 (628)
T ss_dssp SC-----------------------------------------------------------CCEEEEETTTTEEEEEETT
T ss_pred CC-----------------------------------------------------------cceEEEEeCCCEEEEEECC
Confidence 44 5555555555555555555
Q ss_pred CCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCC
Q psy13635 197 TDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNE 276 (357)
Q Consensus 197 ~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~ 276 (357)
.++|++++++|+.++++....+..|++|++||..|.|||+|++.. ++|+++++||+.++.++ ..+.+|+||++|+.++
T Consensus 101 ~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~-~~I~r~~~dG~~~~~l~-~~~~~P~GlalD~~~~ 178 (628)
T 4a0p_A 101 TNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGK-PKIDRAAMDGSERTTLV-PNVGRANGLTIDYAKR 178 (628)
T ss_dssp TTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSS-CEEEEEETTSCSCEEEE-CSCSSEEEEEEETTTT
T ss_pred CCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCC-CEEEEEeCCCCceEEEE-CCCCCcceEEEccccC
Confidence 566666666666666666567789999999999999999999753 79999999999998887 5789999999999899
Q ss_pred EEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEECCEEEEEeCCCCeEEEEeCccCceeEEEecccCCceeeee
Q psy13635 277 KLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVIIERSCTGVTRRR 355 (357)
Q Consensus 277 ~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~i~~ 355 (357)
+|||+|...++|++++++|..++ ++...+.+|+||++++++||||||.+++|.++++.+|+..+++..++..|++|+-
T Consensus 179 ~LY~aD~~~~~I~~~d~dG~~~~-v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v 256 (628)
T 4a0p_A 179 RLYWTDLDTNLIESSNMLGLNRE-VIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILV 256 (628)
T ss_dssp EEEEEETTTTEEEEEETTSCSCE-EEEECCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEE
T ss_pred EEEEEECCCCEEEEEcCCCCceE-EeeccCCCceEEEEECCEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeee
Confidence 99999999999999999999885 4556789999999999999999999999999999999999999999999999863
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-39 Score=306.09 Aligned_cols=251 Identities=35% Similarity=0.728 Sum_probs=229.2
Q ss_pred CCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCC
Q psy13635 82 KSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQ 161 (357)
Q Consensus 82 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~ 161 (357)
+..|++++. ..|+++++++.. .+.+..++..|.|+++|+.++.|||+|...++|.+++++|+..+.++..
T Consensus 87 ~~~l~~~~~--~~I~~i~~~~~~----~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~---- 156 (386)
T 3v65_B 87 EPVLLFANR--IDIRQVLPHRSE----YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST---- 156 (386)
T ss_dssp CCEEEEECB--SCEEEECTTSCC----CEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS----
T ss_pred cceeEeecC--ccceeeccCCCc----EEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC----
Confidence 577888765 579999999875 5666778899999999999999999999999999999999887776533
Q ss_pred cceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCC
Q psy13635 162 PRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEK 241 (357)
Q Consensus 162 p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~ 241 (357)
++..|.|||+||.+++|||+|...++|++++++|+.++.+....+..|++|++||.+|+|||+|++..
T Consensus 157 ------------~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~ 224 (386)
T 3v65_B 157 ------------GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNT 224 (386)
T ss_dssp ------------SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSS
T ss_pred ------------CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCC
Confidence 34589999999999999999999999999999999988888888899999999999999999999862
Q ss_pred CCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEECCEEEE
Q psy13635 242 RPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYW 321 (357)
Q Consensus 242 ~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~~~~ly~ 321 (357)
++|++++++|+.++.++..++..|+||++|+.+++|||+|...++|++++++|+.++.++...+.+|.||+++++.|||
T Consensus 225 -~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~~~~ly~ 303 (386)
T 3v65_B 225 -PRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYW 303 (386)
T ss_dssp -CEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEETTEEEE
T ss_pred -CEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEECCEEEE
Confidence 6999999999999999888899999999999999999999999999999999999888887788999999999999999
Q ss_pred EeCCCCeEEEEeCccCceeEEEecccCCceeeee
Q psy13635 322 TDWQRRSIDRVNKITGNDREVIIERSCTGVTRRR 355 (357)
Q Consensus 322 td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~i~~ 355 (357)
+|+.+++|.++++.+|+..+.+..++..|++|+.
T Consensus 304 td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 304 TDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp EETTTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred eeCCCCeEEEEECCCCcceEEEccCCCCCceEEE
Confidence 9999999999998899999999999999999874
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=323.02 Aligned_cols=256 Identities=33% Similarity=0.656 Sum_probs=215.9
Q ss_pred CCCeEEEEEeCCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCc-ceeEEEEeCCcC
Q psy13635 39 VAAQMLLFATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNV-GSKHNVITNGLI 117 (357)
Q Consensus 39 ~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~~~~~~ 117 (357)
++.++|+++++++|+++++++ ..+..++..+..|.||++|+.+++|||+|...++|++++++|... .....++..++
T Consensus 393 ~~~p~Ll~an~~~Ir~i~l~~-~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l- 470 (791)
T 3m0c_C 393 GSIAYLFFTNRHEVRKMTLDR-SEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI- 470 (791)
T ss_dssp TSCCEEEEECBSSEEEECTTS-CCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC-
T ss_pred ccccccccccccceeEeeccC-CcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCC-
Confidence 578899999999999999987 567777889999999999999999999999999999999987520 00122222233
Q ss_pred CceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCC
Q psy13635 118 TPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGT 197 (357)
Q Consensus 118 ~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~ 197 (357)
..|.||||||.+++|||+|...
T Consensus 471 ----------------------------------------------------------~~P~GLAvD~~~~~LY~tD~~~ 492 (791)
T 3m0c_C 471 ----------------------------------------------------------QAPDGLAVDWIHSNIYWTDSVL 492 (791)
T ss_dssp ----------------------------------------------------------SCCCEEEEETTTTEEEEEETTT
T ss_pred ----------------------------------------------------------CCcceeeeeecCCcEEEEecCC
Confidence 3566666666666677777666
Q ss_pred CeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCE
Q psy13635 198 DRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEK 277 (357)
Q Consensus 198 ~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~ 277 (357)
++|++++++|+.+++++...+..|+||||||..|+|||+|++.. ++|++++++|+.+++++...+.+|+||++|+.+++
T Consensus 493 ~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~-~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~ 571 (791)
T 3m0c_C 493 GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP-AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGR 571 (791)
T ss_dssp TEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSS-CEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTE
T ss_pred CeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCC-CeEEEEecCCCceEEEEeCCCCCceEEEEecCCCe
Confidence 77777777777777776667888999999999999999999863 69999999999999999889999999999999999
Q ss_pred EEEEeCCCCeEEEEeCCCCCeEEEecC--CCCceEEEEEECCEEEEEeCCCCeEEEEeCccCceeEEEecccCCceeeee
Q psy13635 278 LYWCDAKTDKIEMIDFDGNNRRELINE--NLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVIIERSCTGVTRRR 355 (357)
Q Consensus 278 lY~~d~~~~~I~~~~~dG~~~~~i~~~--~~~~p~gia~~~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~i~~ 355 (357)
|||+|.+.++|++++++|..++.++.. .+.+|+||++++++|||||+.+++|+++++.+|+.++++..++..|++|+-
T Consensus 572 LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~~~l~~P~~i~v 651 (791)
T 3m0c_C 572 LYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 651 (791)
T ss_dssp EEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEE
T ss_pred EEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcceEEeecCCCCceeEee
Confidence 999999999999999999999888764 578999999999999999999999999999999999999999999999864
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=299.52 Aligned_cols=252 Identities=35% Similarity=0.657 Sum_probs=227.9
Q ss_pred CCeEEEEEeCCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCc
Q psy13635 40 AAQMLLFATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITP 119 (357)
Q Consensus 40 ~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p 119 (357)
+.++|++++.+.|+++++++ ...+.+.+.+..|.++++|+.++.|||+|...+.|++++++|+. .+.++..++..|
T Consensus 86 ~~~~l~~~~~~~I~~i~~~~-~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~---~~~~~~~~~~~p 161 (386)
T 3v65_B 86 PEPVLLFANRIDIRQVLPHR-SEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN---VEEVVSTGLESP 161 (386)
T ss_dssp SCCEEEEECBSCEEEECTTS-CCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC---EEEEECSSCSCC
T ss_pred ccceeEeecCccceeeccCC-CcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC---cEEEEeCCCCCc
Confidence 48999999999999999987 56777788999999999999999999999999999999999985 356677788999
Q ss_pred eeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCC-C
Q psy13635 120 DGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGT-D 198 (357)
Q Consensus 120 ~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~-~ 198 (357)
.|||+||.+++|||+|...++|.+++++|..++.++.. .+..|+||++|+.++.|||+|.+. +
T Consensus 162 ~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~----------------~l~~P~giavdp~~g~ly~td~~~~~ 225 (386)
T 3v65_B 162 GGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ----------------SLEKPRAIALHPMEGTIYWTDWGNTP 225 (386)
T ss_dssp CCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECS----------------SCSCEEEEEEETTTTEEEEEECSSSC
T ss_pred cEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecC----------------CCCCCcEEEEEcCCCeEEEeccCCCC
Confidence 99999999999999999999999999999988777633 446899999999999999999998 8
Q ss_pred eEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEE
Q psy13635 199 RIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKL 278 (357)
Q Consensus 199 ~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~l 278 (357)
+|++++++|+.+..++...+..|+||++|+.+++|||+|... ++|++++++|+.++.++...+..|.||+++ ++.|
T Consensus 226 ~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~--~~I~~~d~dG~~~~~~~~~~~~~P~giav~--~~~l 301 (386)
T 3v65_B 226 RIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKH--HVIERANLDGSHRKAVISQGLPHPFAITVF--EDSL 301 (386)
T ss_dssp EEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTT--TEEEEECTTSCSCEEEECSSCSSEEEEEEE--TTEE
T ss_pred EEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCC--CEEEEEeCCCCeeEEEEECCCCCceEEEEE--CCEE
Confidence 999999999999888887889999999999899999999985 599999999999998888889999999994 7899
Q ss_pred EEEeCCCCeEEEEe-CCCCCeEEEecCCCCceEEEEEEC
Q psy13635 279 YWCDAKTDKIEMID-FDGNNRRELINENLPHVFGISLLG 316 (357)
Q Consensus 279 Y~~d~~~~~I~~~~-~dG~~~~~i~~~~~~~p~gia~~~ 316 (357)
||+|+.+++|.+++ .+|...+.+. ..+..|.||+++.
T Consensus 302 y~td~~~~~V~~~~~~~G~~~~~i~-~~~~~p~gi~v~~ 339 (386)
T 3v65_B 302 YWTDWHTKSINSANKFTGKNQEIIR-NKLHFPMDIHTLH 339 (386)
T ss_dssp EEEETTTTEEEEEETTTCCSCEEEE-CSCSCCCCEEEES
T ss_pred EEeeCCCCeEEEEECCCCcceEEEc-cCCCCCceEEEEc
Confidence 99999999999999 6888887665 4688999999984
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-37 Score=307.99 Aligned_cols=253 Identities=34% Similarity=0.606 Sum_probs=223.9
Q ss_pred CCCeEEEEEeCCcEEEEEcCCCCc--ceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCc
Q psy13635 39 VAAQMLLFATSKDIRIANLSRPLK--PVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGL 116 (357)
Q Consensus 39 ~~~~~l~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~ 116 (357)
+++++|+++.++.|++++++.... ..++++++..|.+|+||+.+++|||+|...+.|+|++++|+. .+.++..++
T Consensus 315 ~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~---~~~v~~~~~ 391 (619)
T 3s94_A 315 GATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSG---SQFVVTAQI 391 (619)
T ss_dssp SCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEECSSC
T ss_pred CCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCc---cEEEEECCC
Confidence 368899999999999999987533 334457789999999999999999999999999999999975 356777888
Q ss_pred CCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC
Q psy13635 117 ITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG 196 (357)
Q Consensus 117 ~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~ 196 (357)
..|.|||+||.+++|||+|...++|.+++++|+.++++... .+..|.+||+|+..|.|||||++
T Consensus 392 ~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~----------------~l~~P~~iavdp~~G~ly~tD~g 455 (619)
T 3s94_A 392 AHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISE----------------DLEEPRAIVLDPMVGYMYWTDWG 455 (619)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECT----------------TCCSEEEEEEETTTTEEEEEECS
T ss_pred CCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEEC----------------CCCCeeeEEEEcCCCcEEEecCC
Confidence 99999999999999999999999999999999988887643 45689999999999999999987
Q ss_pred C-CeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCC
Q psy13635 197 T-DRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDN 275 (357)
Q Consensus 197 ~-~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~ 275 (357)
. .+|+++++||+.+..+..+.+..|+||++|+.+++|||+|... ++|++++++|+.++++....+..|.||+++ +
T Consensus 456 ~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~--~~I~~~~~dG~~~~~~~~~~l~~P~glav~--~ 531 (619)
T 3s94_A 456 EIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKT--DKIEVMNTDGTGRRVLVEDKIPHIFGFTLL--G 531 (619)
T ss_dssp SSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTT--TEEEEEESSSCCCEEEEECCCCSSCCEEEE--T
T ss_pred CCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCC--CEEEEEecCCCceEEEeccCCCCcEEEEEE--C
Confidence 5 6999999999999888887899999999999899999999995 599999999999999988889999999995 6
Q ss_pred CEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEE
Q psy13635 276 EKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLL 315 (357)
Q Consensus 276 ~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~ 315 (357)
++|||+|+.+++|+++++...+.+.+ .+++..|.+|.++
T Consensus 532 ~~ly~tD~~~~~I~~~~k~~g~~~~~-~~~~~~~~~i~~~ 570 (619)
T 3s94_A 532 DYVYWTDWQRRSIERVHKRSAEREVI-IDQLPDLMGLKAT 570 (619)
T ss_dssp TEEEEECTTSSCEEEEESSSCCEEEE-ECSCCCEEEEEEE
T ss_pred CEEEEeecCCCeEEEEEcCCCceEEE-ecCCCCCceeeec
Confidence 79999999999999999865555544 4578899999876
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-34 Score=254.71 Aligned_cols=254 Identities=30% Similarity=0.591 Sum_probs=214.1
Q ss_pred CEEEEEeCCCCeEEEEEcCCCCcc--eeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCC
Q psy13635 83 SMVCWTDHGTEMISCCTFDGNNVG--SKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDID 160 (357)
Q Consensus 83 ~~ly~~d~~~~~I~~~~~~g~~~~--~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~ 160 (357)
..|||++. +.|++++++|.... +...++......|+++++|+.+++|||+|..+++|.+++++|...+.+..
T Consensus 2 ~~l~~~~~--~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~---- 75 (267)
T 1npe_A 2 THLLFAQT--GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR---- 75 (267)
T ss_dssp EEEEEEEE--EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC----
T ss_pred cEEEEEcC--CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE----
Confidence 46888884 58999999987521 01234444456899999999899999999999999999999987665542
Q ss_pred CcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCC
Q psy13635 161 QPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNE 240 (357)
Q Consensus 161 ~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~ 240 (357)
.++..|.+|++|+.+++|||+|...++|.+++++|...+.+....+..|+++++||.+|+|||++...
T Consensus 76 ------------~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~ 143 (267)
T 1npe_A 76 ------------QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR 143 (267)
T ss_dssp ------------TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS
T ss_pred ------------CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC
Confidence 23458999999998999999999999999999999887777766778999999999889999999873
Q ss_pred CCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEECCEEE
Q psy13635 241 KRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVY 320 (357)
Q Consensus 241 ~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~~~~ly 320 (357)
..++|++++++|...+.+....+..|+||++|+.+++|||+|...++|.+++++|..+..+.. .+.+|.||++++++||
T Consensus 144 ~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~-~~~~P~gi~~d~~~ly 222 (267)
T 1npe_A 144 DNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE-GLQYPFAVTSYGKNLY 222 (267)
T ss_dssp SSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE-CCCSEEEEEEETTEEE
T ss_pred CCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec-CCCCceEEEEeCCEEE
Confidence 226999999999888877767788999999998889999999999999999999987766654 6789999999999999
Q ss_pred EEeCCCCeEEEEeCccCceeEEEecc-cCCceeeee
Q psy13635 321 WTDWQRRSIDRVNKITGNDREVIIER-SCTGVTRRR 355 (357)
Q Consensus 321 ~td~~~~~I~~~~~~~g~~~~~i~~~-l~~p~~i~~ 355 (357)
|+++.+++|+++++.+|+..+.+..+ ...|.+|..
T Consensus 223 va~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~ 258 (267)
T 1npe_A 223 YTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITI 258 (267)
T ss_dssp EEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEE
T ss_pred EEECCCCeEEEEeCCCCCceEEEccccccccceeee
Confidence 99999999999999889988888655 346888864
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=246.24 Aligned_cols=252 Identities=26% Similarity=0.469 Sum_probs=209.4
Q ss_pred CeEEEEEeCCcEEEEEcCCCCcc-----eEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCC
Q psy13635 41 AQMLLFATSKDIRIANLSRPLKP-----VTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNG 115 (357)
Q Consensus 41 ~~~l~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 115 (357)
.|+|++++.+.|+++++++.... .........|.++++|+.++.|||+|...+.|++++++|.. ...++..+
T Consensus 1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~---~~~~~~~~ 77 (267)
T 1npe_A 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE---PTTIIRQD 77 (267)
T ss_dssp CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC---CEEEECTT
T ss_pred CcEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC---cEEEEECC
Confidence 37899999999999999884321 22223356899999999999999999999999999999874 24455567
Q ss_pred cCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeC
Q psy13635 116 LITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDT 195 (357)
Q Consensus 116 ~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~ 195 (357)
+..|.++++|+.+++|||+|...++|.+++++|...+.+... .+..|.++++|+.+++|||++.
T Consensus 78 ~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~----------------~~~~P~~i~vd~~~g~lyv~~~ 141 (267)
T 1npe_A 78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT----------------GLVNPRGIVTDPVRGNLYWTDW 141 (267)
T ss_dssp CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS----------------SCSSEEEEEEETTTTEEEEEEC
T ss_pred CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEEC----------------CCCCccEEEEeeCCCEEEEEEC
Confidence 789999999998999999999999999999999877666532 3457999999988999999998
Q ss_pred C--CCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEec
Q psy13635 196 G--TDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDV 273 (357)
Q Consensus 196 ~--~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~ 273 (357)
. .++|++++++|+..+.+....+..|+||++|+.+++|||++... ++|.+++++|.....+.. .+..|.||++|
T Consensus 142 ~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~--~~I~~~~~~g~~~~~~~~-~~~~P~gi~~d- 217 (267)
T 1npe_A 142 NRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGT--HRAECLNPAQPGRRKVLE-GLQYPFAVTSY- 217 (267)
T ss_dssp CSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTT--TEEEEEETTEEEEEEEEE-CCCSEEEEEEE-
T ss_pred CCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCC--CEEEEEecCCCceEEEec-CCCCceEEEEe-
Confidence 7 57999999999887777666778999999999889999999995 599999999887766664 57899999997
Q ss_pred CCCEEEEEeCCCCeEEEEeCC-CCCeEEEecCCCCceEEEEEEC
Q psy13635 274 DNEKLYWCDAKTDKIEMIDFD-GNNRRELINENLPHVFGISLLG 316 (357)
Q Consensus 274 ~~~~lY~~d~~~~~I~~~~~d-G~~~~~i~~~~~~~p~gia~~~ 316 (357)
+++|||++..+++|.+++.+ |.....+.......|.||++..
T Consensus 218 -~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~ 260 (267)
T 1npe_A 218 -GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL 260 (267)
T ss_dssp -TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred -CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecC
Confidence 79999999999999999997 4445545433345799999874
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-35 Score=294.38 Aligned_cols=250 Identities=31% Similarity=0.637 Sum_probs=215.6
Q ss_pred CEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCC----ceEEEEecC
Q psy13635 83 SMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGK----KRKVLYWED 158 (357)
Q Consensus 83 ~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~----~~~~~~~~~ 158 (357)
..|++++. +.|+++++++.. ...+...+..|.+|++|+.++.|||+|...++|.+++++|. ....++
T Consensus 378 ~~ll~~~~--~~I~~id~~~~~----~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i--- 448 (699)
T 1n7d_A 378 AYLFFTNR--HEVRKMTLDRSE----YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI--- 448 (699)
T ss_dssp CCBCCCCT--TC-CEECTTSCC----EECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC---
T ss_pred eeEEecCc--cceEEEeCCCCc----ceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE---
Confidence 44555543 578899998875 55566678899999999999999999999999999999872 222221
Q ss_pred CCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeC
Q psy13635 159 IDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDW 238 (357)
Q Consensus 159 ~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~ 238 (357)
...+..|.||||||.+++|||+|...++|.+++++|..+++++...+..|++|++||..|+|||+++
T Consensus 449 -------------~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~ 515 (699)
T 1n7d_A 449 -------------SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDW 515 (699)
T ss_dssp -------------CSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCC
T ss_pred -------------eCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEccc
Confidence 2345689999999999999999999999999999999988888777899999999999999999998
Q ss_pred CCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEec--CCCCceEEEEEEC
Q psy13635 239 NEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELIN--ENLPHVFGISLLG 316 (357)
Q Consensus 239 ~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~--~~~~~p~gia~~~ 316 (357)
+.. ++|++++++|+.+++++...+.+|+||++|+.+++|||+|...++|++++++|..++.++. ..+.+|.||++++
T Consensus 516 ~~~-~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~ 594 (699)
T 1n7d_A 516 GTP-AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE 594 (699)
T ss_dssp SSS-CCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEET
T ss_pred CCC-CeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEEC
Confidence 753 6999999999998888877899999999999899999999999999999999998887775 3578999999999
Q ss_pred CEEEEEeCCCCeEEEEeCccCceeEEEecccCCceeeee
Q psy13635 317 DYVYWTDWQRRSIDRVNKITGNDREVIIERSCTGVTRRR 355 (357)
Q Consensus 317 ~~ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~i~~ 355 (357)
++|||+++.+++|.++++.+|+..+.|..++..|++|+-
T Consensus 595 ~~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v 633 (699)
T 1n7d_A 595 DKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 633 (699)
T ss_dssp TEEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCCB
T ss_pred CEEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEEE
Confidence 999999999999999999899999999888989998863
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=290.82 Aligned_cols=256 Identities=30% Similarity=0.510 Sum_probs=215.3
Q ss_pred CCCeEEEEEeCCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCc-ceeEEEEeCCcC
Q psy13635 39 VAAQMLLFATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNV-GSKHNVITNGLI 117 (357)
Q Consensus 39 ~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~~~~~~ 117 (357)
++.++|++++++.|+++++++ .....++..+..|.+|++++.++.|||+|...+.|++++++|... .....++..++.
T Consensus 375 ~~~~~ll~~~~~~I~~id~~~-~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~ 453 (699)
T 1n7d_A 375 GSIAYLFFTNRHEVRKMTLDR-SEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 453 (699)
T ss_dssp SSCCCBCCCCTTC-CEECTTS-CCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC-
T ss_pred ccceeEEecCccceEEEeCCC-CcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCC
Confidence 567899999999999999987 456667788899999999999999999999999999999997210 012344556788
Q ss_pred CceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCC
Q psy13635 118 TPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGT 197 (357)
Q Consensus 118 ~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~ 197 (357)
.|.|||+||.+++|||+|...++|.+++++|..+++++. ..+..|.|||+|+.+++|||++.+.
T Consensus 454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~----------------~~~~~P~giavDp~~g~ly~td~~~ 517 (699)
T 1n7d_A 454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR----------------EQGSKPRAIVVDPVHGFMYWTDWGT 517 (699)
T ss_dssp -CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECC----------------CSSCCCCCEECCSSSSCCEECCCSS
T ss_pred CcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEe----------------CCCCCcceEEEccCCCcEEEcccCC
Confidence 999999999999999999999999999999998777653 2345799999999999999999876
Q ss_pred -CeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeC--CCCCceEEEEecC
Q psy13635 198 -DRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKD--RLGWPNGITLDVD 274 (357)
Q Consensus 198 -~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~--~l~~P~giaid~~ 274 (357)
++|++++++|+.+++++...+..|+|||+|+.+++|||+|... .+|++++++|..+++++.. .+.+|.||++|
T Consensus 518 ~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~--~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd-- 593 (699)
T 1n7d_A 518 PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL--HSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-- 593 (699)
T ss_dssp SCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTT--TEEEEECSSSSCCEEECCCSSSCSSCCCCEEE--
T ss_pred CCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCC--CeEEEEccCCCceEEEEecCCcCCCceEeEEE--
Confidence 7999999999988888777889999999999999999999884 5999999999988888753 47889999997
Q ss_pred CCEEEEEeCCCCeEEEEeC-CCCCeEEEecCCCCceEEEEEEC
Q psy13635 275 NEKLYWCDAKTDKIEMIDF-DGNNRRELINENLPHVFGISLLG 316 (357)
Q Consensus 275 ~~~lY~~d~~~~~I~~~~~-dG~~~~~i~~~~~~~p~gia~~~ 316 (357)
+++|||+|+.+++|.++++ +|...+. +...+.+|.+|+++.
T Consensus 594 ~~~lywtd~~~~~V~~~d~~~G~~~~~-i~~~~~~P~~i~v~~ 635 (699)
T 1n7d_A 594 EDKVFWTDIINEAIFSANRLTGSDVNL-LAENLLSPEDMVLFH 635 (699)
T ss_dssp TTEEEEECSTTTCEEEEETTTEEEEEC-CCTTCSSCCCCCBCS
T ss_pred CCEEEEEeCCCCeEEEEEccCCCceEE-eecCCCCCcEEEEeC
Confidence 5699999999999999997 4655544 444577899998864
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-27 Score=217.09 Aligned_cols=225 Identities=22% Similarity=0.390 Sum_probs=186.2
Q ss_pred EEEeecCCCCeEEEEEe--CCcEEEEEcCCCCc-ceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCccee
Q psy13635 32 WYALSHHVAAQMLLFAT--SKDIRIANLSRPLK-PVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSK 108 (357)
Q Consensus 32 ~~~~~~~~~~~~l~~~~--~~~i~~~~~~~~~~-~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~ 108 (357)
..++.-......||+++ .+.|++++++++.. ..+....+..|.++++|+.++.|||+|...+.|.+++++|.. .
T Consensus 37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~---~ 113 (318)
T 3sov_A 37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL---R 113 (318)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---C
T ss_pred cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc---E
Confidence 44445554566788888 45699999988532 345567788999999999999999999999999999999985 2
Q ss_pred EEEEeCCcCCceeEEEEcCCCeEEEEeCC-CCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCC
Q psy13635 109 HNVITNGLITPDGLAIDWLTEKLYWTDSE-TNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVA 187 (357)
Q Consensus 109 ~~~~~~~~~~p~glavd~~~~~ly~td~~-~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~ 187 (357)
..+...++..|.|||+|+.++.|||+|.+ .++|.+++++|+.++.++. .++..|+||++|+.+
T Consensus 114 ~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~----------------~~l~~Pnglavd~~~ 177 (318)
T 3sov_A 114 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN----------------SEIYWPNGLTLDYEE 177 (318)
T ss_dssp EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEEC----------------SSCSCEEEEEEETTT
T ss_pred EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEE----------------CCCCCccEEEEeccC
Confidence 44555788999999999999999999975 7899999999998877763 345689999999999
Q ss_pred CeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEec-CCCceEEEeeCCCCCc
Q psy13635 188 RNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLL-NGGERVLLVKDRLGWP 266 (357)
Q Consensus 188 ~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~-dg~~~~~~~~~~l~~P 266 (357)
++|||+|...++|++++++|+.++++....+..|.||+++ .+.|||+|+.. ++|.+++. +|...+.+. ..+..|
T Consensus 178 ~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~--~~~lywtd~~~--~~V~~~~~~~G~~~~~i~-~~~~~P 252 (318)
T 3sov_A 178 QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTDWST--HSILACNKYTGEGLREIH-SDIFSP 252 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE--TTEEEEEETTT--TEEEEEETTTCCSCEEEE-CCCSSC
T ss_pred CEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe--CCEEEEEecCC--CeEEEEECCCCCceEEEe-CCCCCC
Confidence 9999999999999999999999888887778999999998 57999999985 59999999 566665554 667899
Q ss_pred eEEEEecCCCEEEE
Q psy13635 267 NGITLDVDNEKLYW 280 (357)
Q Consensus 267 ~giaid~~~~~lY~ 280 (357)
.+|++.......+.
T Consensus 253 ~~i~v~~~~~q~~~ 266 (318)
T 3sov_A 253 MDIHAFSQQRQPNA 266 (318)
T ss_dssp CCEEEECGGGSCCC
T ss_pred cEEEEecccccccc
Confidence 99998654444433
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-27 Score=222.86 Aligned_cols=244 Identities=22% Similarity=0.367 Sum_probs=194.5
Q ss_pred EEEEEeceeEEEEE--------E--EEEEEEEeecCCCCeEEEEEe--CCcEEEEEcCCC----CcceEeccCCCcEEEE
Q psy13635 13 MMFITNTKWVNYIF--------L--VVHFWYALSHHVAAQMLLFAT--SKDIRIANLSRP----LKPVTIIKDLEEGAAI 76 (357)
Q Consensus 13 ~~~~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~l~~~~--~~~i~~~~~~~~----~~~~~~~~~~~~~~~i 76 (357)
.++..|++.++.|- + -+.-..+++.......||+++ .+.|+++++++. ....++...+..|.|+
T Consensus 85 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~gl 164 (400)
T 3p5b_L 85 YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL 164 (400)
T ss_dssp EEEEEETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEE
T ss_pred eeEEeccceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccE
Confidence 45667777776661 1 122345666666667889987 456999999872 2344455588899999
Q ss_pred EEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCC-CCEEEEEEcCCCceEEEE
Q psy13635 77 DYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSE-TNKLEVSSLDGKKRKVLY 155 (357)
Q Consensus 77 ~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~-~~~I~~~~~~g~~~~~~~ 155 (357)
++|+.++.|||+|...+.|.+++++|.. ...++..++..|.+||+|+.++.|||+|.+ .++|.+++++|+.++.++
T Consensus 165 avD~~~~~lY~~d~~~~~I~~~~~~g~~---~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~ 241 (400)
T 3p5b_L 165 AVDWIHSNIYWTDSVLGTVSVADTKGVK---RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 241 (400)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTTCS---EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE
T ss_pred EEEecCCceEEEECCCCeEEEEeCCCCc---eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE
Confidence 9999999999999999999999999985 355666788999999999999999999976 489999999999888876
Q ss_pred ecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecC--CCCCceEEEEeCCCCEE
Q psy13635 156 WEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNT--DLVEPRAITLSPAHGYL 233 (357)
Q Consensus 156 ~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~--~~~~P~giavd~~~g~L 233 (357)
. ..+..|+|||+|+.+++|||+|...++|++++++|..++++... .+.+|.||+++ +++|
T Consensus 242 ~----------------~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~--~~~l 303 (400)
T 3p5b_L 242 T----------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKV 303 (400)
T ss_dssp C----------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE--TTEE
T ss_pred E----------------CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe--CCEE
Confidence 3 34568999999999999999999999999999999988887763 47899999997 5899
Q ss_pred EEEeCCCCCCeEEEEe-cCCCceEEEeeCCCCCceEEEEecCCCEEEE
Q psy13635 234 FWSDWNEKRPKIERSL-LNGGERVLLVKDRLGWPNGITLDVDNEKLYW 280 (357)
Q Consensus 234 y~~d~~~~~~~I~~~~-~dg~~~~~~~~~~l~~P~giaid~~~~~lY~ 280 (357)
||+|+.. .+|.+++ .+|....++. ..+..|.+|++.......+.
T Consensus 304 ywtd~~~--~~V~~~~~~~G~~~~~i~-~~~~~p~~i~v~~~~~qp~~ 348 (400)
T 3p5b_L 304 FWTDIIN--EAIFSANRLTGSDVNLLA-ENLLSPEDMVLFHNLTQPRG 348 (400)
T ss_dssp EEEESSS--CSEEEEESSSCCCCEEEE-CSCSCEEEEEEESGGGSCCC
T ss_pred EEecCCC--CeEEEEEcCCCCceEEEe-cCCCCCceEEEEeeccCCCC
Confidence 9999985 5999999 6777766664 67889999998654444333
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-27 Score=240.28 Aligned_cols=246 Identities=22% Similarity=0.367 Sum_probs=194.4
Q ss_pred EEEEEeceeEEEEEE----------EEEEEEEeecCCCCeEEEEEeC--CcEEEEEcCCC----CcceEeccCCCcEEEE
Q psy13635 13 MMFITNTKWVNYIFL----------VVHFWYALSHHVAAQMLLFATS--KDIRIANLSRP----LKPVTIIKDLEEGAAI 76 (357)
Q Consensus 13 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~--~~i~~~~~~~~----~~~~~~~~~~~~~~~i 76 (357)
+++.+|++.++.|.+ -+.-..+++.......||+++. +.|+++++++. ....++...+..|.||
T Consensus 397 ~Ll~an~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GL 476 (791)
T 3m0c_C 397 YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL 476 (791)
T ss_dssp EEEEECBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEE
T ss_pred ccccccccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCccee
Confidence 456678877766522 1122456666666677888884 56999999873 2233444588999999
Q ss_pred EEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCC-CEEEEEEcCCCceEEEE
Q psy13635 77 DYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSET-NKLEVSSLDGKKRKVLY 155 (357)
Q Consensus 77 ~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~-~~I~~~~~~g~~~~~~~ 155 (357)
++|+.+++|||+|...++|++++++|.. ...++..++..|.||||||..+.|||+|.+. ++|.+++++|+.+++++
T Consensus 477 AvD~~~~~LY~tD~~~~~I~v~~ldG~~---~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv 553 (791)
T 3m0c_C 477 AVDWIHSNIYWTDSVLGTVSVADTKGVK---RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 553 (791)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSSS---EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred eeeecCCcEEEEecCCCeEEEEeCCCCe---EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE
Confidence 9999999999999999999999999985 3556667889999999999999999999876 89999999999998887
Q ss_pred ecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecC--CCCCceEEEEeCCCCEE
Q psy13635 156 WEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNT--DLVEPRAITLSPAHGYL 233 (357)
Q Consensus 156 ~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~--~~~~P~giavd~~~g~L 233 (357)
.. .+.+|+|||||+.+++|||+|...++|++++++|..+++++.. .+.+|.+|+++ +++|
T Consensus 554 ~~----------------~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~l 615 (791)
T 3m0c_C 554 TE----------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKV 615 (791)
T ss_dssp CS----------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEE
T ss_pred eC----------------CCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEE
Confidence 43 4568999999999999999999999999999999998888764 47789999997 5799
Q ss_pred EEEeCCCCCCeEEEEec-CCCceEEEeeCCCCCceEEEEecCCCEEEEEe
Q psy13635 234 FWSDWNEKRPKIERSLL-NGGERVLLVKDRLGWPNGITLDVDNEKLYWCD 282 (357)
Q Consensus 234 y~~d~~~~~~~I~~~~~-dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d 282 (357)
||+|+.. .+|++++. +|..+.++ ...+..|.+|++.......+..+
T Consensus 616 YwtD~~~--~~I~~~dk~tG~~~~~l-~~~l~~P~~i~v~h~~~Qp~~~N 662 (791)
T 3m0c_C 616 FWTDIIN--EAIFSANRLTGSDVNLL-AENLLSPEDMVLFHNLTQPRGVN 662 (791)
T ss_dssp EEEETTT--TEEEEEETTTCCCCEEE-ECSCSCCCCEEEESGGGSCCCCC
T ss_pred EEEECCC--CEEEEEeCCCCcceEEe-ecCCCCceeEeeeccccCCCCCC
Confidence 9999995 59999985 66666555 46788999999875443344333
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-26 Score=212.49 Aligned_cols=219 Identities=22% Similarity=0.394 Sum_probs=177.7
Q ss_pred EEEeecCCCCeEEEEEe--CCcEEEEEcCC----CCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCc
Q psy13635 32 WYALSHHVAAQMLLFAT--SKDIRIANLSR----PLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNV 105 (357)
Q Consensus 32 ~~~~~~~~~~~~l~~~~--~~~i~~~~~~~----~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~ 105 (357)
..+++.......|++++ .+.|.++++++ .....++...+..|.++++|+.++.|||+|...+.|.+++++|..
T Consensus 32 p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~- 110 (316)
T 1ijq_A 32 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK- 110 (316)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS-
T ss_pred eEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCc-
Confidence 34555555566788888 45799999986 222333335678999999999899999999999999999999875
Q ss_pred ceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCC-CEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEe
Q psy13635 106 GSKHNVITNGLITPDGLAIDWLTEKLYWTDSET-NKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVD 184 (357)
Q Consensus 106 ~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~-~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD 184 (357)
...++..++..|.++++|+.++.|||+|.+. ++|.+++++|+..+.+.. ..+..|+||++|
T Consensus 111 --~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~----------------~~~~~P~gla~d 172 (316)
T 1ijq_A 111 --RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT----------------ENIQWPNGITLD 172 (316)
T ss_dssp --EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC----------------SSCSCEEEEEEE
T ss_pred --eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE----------------CCCCCceEEEEe
Confidence 2445556788999999999999999999876 899999999998877753 245689999999
Q ss_pred CCCCeEEEEeCCCCeEEEEEcCCCceEEEecC--CCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEec-CCCceEEEeeC
Q psy13635 185 WVARNLYWTDTGTDRIEVCRLEGTHRKVLVNT--DLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLL-NGGERVLLVKD 261 (357)
Q Consensus 185 ~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~--~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~-dg~~~~~~~~~ 261 (357)
+.+++|||+|...++|++++++|+.++++... .+.+|.||+++ +++|||+|+.. ++|.+++. +|.....+. .
T Consensus 173 ~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~--~~~ly~~d~~~--~~V~~~~~~~g~~~~~i~-~ 247 (316)
T 1ijq_A 173 LLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIIN--EAIFSANRLTGSDVNLLA-E 247 (316)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTT--TEEEEEETTTCCCCEEEE-C
T ss_pred ccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE--CCEEEEEECCC--CeEEEEeCCCCcceEEEe-c
Confidence 99999999999999999999999888887653 47899999998 48999999985 59999997 576666554 5
Q ss_pred CCCCceEEEEecC
Q psy13635 262 RLGWPNGITLDVD 274 (357)
Q Consensus 262 ~l~~P~giaid~~ 274 (357)
++..|.+|+++..
T Consensus 248 ~~~~p~~i~v~~~ 260 (316)
T 1ijq_A 248 NLLSPEDMVLFHN 260 (316)
T ss_dssp SCSCCCCEEEESG
T ss_pred CCCCceEEEEecc
Confidence 6888999998743
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-25 Score=201.61 Aligned_cols=258 Identities=12% Similarity=0.211 Sum_probs=201.6
Q ss_pred CCeEEEEEe---CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCC-------------CeEEEEEcCCC
Q psy13635 40 AAQMLLFAT---SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGT-------------EMISCCTFDGN 103 (357)
Q Consensus 40 ~~~~l~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~-------------~~I~~~~~~g~ 103 (357)
...+++|++ ...|.+++.+|+. .+.+... .+. .+.+.+++||+++... ..|++++++|+
T Consensus 24 ~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~--~~~--~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~ 98 (302)
T 3s25_A 24 SDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND--TAM--YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGH 98 (302)
T ss_dssp ETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE--EEE--EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSC
T ss_pred eCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC--cee--eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCC
Confidence 456788887 5679999999954 4444332 233 4466789999997653 57999999999
Q ss_pred CcceeEEEEeCCcCCceeEEEEcCCCeEEEEe---CCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCce
Q psy13635 104 NVGSKHNVITNGLITPDGLAIDWLTEKLYWTD---SETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDG 180 (357)
Q Consensus 104 ~~~~~~~~~~~~~~~p~glavd~~~~~ly~td---~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~g 180 (357)
. .+.+.... +.++.+.++.|||++ .+...|++++++|+..+.+.... .
T Consensus 99 ~----~~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~------------------~--- 149 (302)
T 3s25_A 99 G----STVLDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHY------------------L--- 149 (302)
T ss_dssp C----CEEEECSC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSC------------------C---
T ss_pred c----ceEeecCC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCC------------------c---
Confidence 6 55555443 234555699999999 67889999999999888776322 1
Q ss_pred EEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEee
Q psy13635 181 VAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVK 260 (357)
Q Consensus 181 lavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~ 260 (357)
+++||.++.|||++.+...|++++++|..++.+..+ +...+++|..+.|||+++... .+|++++++|+.++.+..
T Consensus 150 ~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~----~~~~~~~P~g~~iy~t~~~~~-~~I~~~~ldG~~~~~Lt~ 224 (302)
T 3s25_A 150 FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC----NCYKPVVLDDTNVYYMDVNRD-NAIVHVNINNPNPVVLTE 224 (302)
T ss_dssp CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS----CEEEEEEEETTEEEEEEGGGT-TEEEEECSSSCCCEECSC
T ss_pred eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC----CccceeeecCCEEEEEEcCCC-cEEEEEECCCCCeEEEeC
Confidence 346788999999999888999999999988877542 344567788999999999864 799999999999988875
Q ss_pred CCCCCceEEEEecCCCEEEEE-eCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEECCEEEEEeCCCCeEEEEeCccCce
Q psy13635 261 DRLGWPNGITLDVDNEKLYWC-DAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGND 339 (357)
Q Consensus 261 ~~l~~P~giaid~~~~~lY~~-d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~~~~ly~td~~~~~I~~~~~~~g~~ 339 (357)
..+ | .+++.+++|||+ +...+.|+++++||+.++.+... ...+|++++++|||+|+..+.|++++. +|+.
T Consensus 225 ~~~--~---~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~---~~~~i~i~~d~Iy~td~~~~~i~~~~~-dGs~ 295 (302)
T 3s25_A 225 ANI--E---HYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAKG---EFCNINVTSQYVYFTDFVSNKEYCTST-QNPD 295 (302)
T ss_dssp SCE--E---EEEEETTEEEEEECSSSCEEEEEETTSCCCEEEEES---CEEEEEECSSEEEEEETTTCCEEEEES-SSCC
T ss_pred CCc--c---eEEECCCEEEEEECCCCcEEEEEECCCCccEEeeCC---ccceEEEeCCEEEEEECCCCeEEEEEC-CCCC
Confidence 443 3 366789999997 56678999999999998888753 355899999999999999999999986 7887
Q ss_pred eEEEec
Q psy13635 340 REVIIE 345 (357)
Q Consensus 340 ~~~i~~ 345 (357)
.+.|.+
T Consensus 296 ~~~l~~ 301 (302)
T 3s25_A 296 TIKALQ 301 (302)
T ss_dssp SCEECC
T ss_pred ceEecC
Confidence 776653
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-25 Score=214.22 Aligned_cols=240 Identities=13% Similarity=0.146 Sum_probs=184.2
Q ss_pred CCCcEEEEEEEc--cCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCC----CEEE
Q psy13635 69 DLEEGAAIDYYY--KKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSET----NKLE 142 (357)
Q Consensus 69 ~~~~~~~i~~d~--~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~----~~I~ 142 (357)
.+..|.+|++|+ .++.|||+|.. +.|+++++.+.. ...+...+..|.+|++|+.++ ||++|..+ ..+.
T Consensus 137 ~~~~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~----v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~ 210 (433)
T 4hw6_A 137 AFDNIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQY----VDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIY 210 (433)
T ss_dssp CCSCCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTE----EEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEE
T ss_pred ccCCCceEEEccccCCCEEEEEeCC-CCEEEEECCCCE----EEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEE
Confidence 567899999998 47999999988 899999996553 555566888999999998655 99999753 2355
Q ss_pred EEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcC-CCceEEEe-cCCCCC
Q psy13635 143 VSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLE-GTHRKVLV-NTDLVE 220 (357)
Q Consensus 143 ~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~-g~~~~~~~-~~~~~~ 220 (357)
.+..++....... ...+..|.|+++|+.+++|||++...++|++++++ |.....+. ......
T Consensus 211 ~~~~~~~~~~~~~----------------~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~ 274 (433)
T 4hw6_A 211 LFTRASGFTERLS----------------LCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGS 274 (433)
T ss_dssp EECGGGTTCCEEE----------------EEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSS
T ss_pred EEECCCCeecccc----------------ccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCC
Confidence 5555444321100 11356899999998899999999999999999998 55423333 233456
Q ss_pred ceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCc-----eEEEeeC--------------CCCCceEEEE---------e
Q psy13635 221 PRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGE-----RVLLVKD--------------RLGWPNGITL---------D 272 (357)
Q Consensus 221 P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~-----~~~~~~~--------------~l~~P~giai---------d 272 (357)
|.+|+++|..++||++|... ++|++++.++.. ...+... .+..|.|+++ |
T Consensus 275 ~~~ia~dpdG~~LYvad~~~--~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd 352 (433)
T 4hw6_A 275 NFHIVWHPTGDWAYIIYNGK--HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE 352 (433)
T ss_dssp CEEEEECTTSSEEEEEETTT--TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS
T ss_pred cccEEEeCCCCEEEEEeCCC--CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccC
Confidence 77899999877899999985 599999988532 1233322 3678999999 6
Q ss_pred cCCCEEEEEeCCCCeEEEEeCCCCCeEEEecC-----------------CCCceEEEEEE--CCEEEEEeCCCCeEEEEe
Q psy13635 273 VDNEKLYWCDAKTDKIEMIDFDGNNRRELINE-----------------NLPHVFGISLL--GDYVYWTDWQRRSIDRVN 333 (357)
Q Consensus 273 ~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~-----------------~~~~p~gia~~--~~~ly~td~~~~~I~~~~ 333 (357)
.+++|||+|..+++|++++.+|.-. .+... .+.+|.||+++ ++.||++|+.+++|++++
T Consensus 353 -~~g~lyvaD~~n~~I~~~~~~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~ 430 (433)
T 4hw6_A 353 -DEYDFYFCDRDSHTVRVLTPEGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIA 430 (433)
T ss_dssp -CCEEEEEEETTTTEEEEECTTSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred -CCCcEEEEECCCCEEEEECCCCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEe
Confidence 7899999999999999999988433 33321 26789999999 699999999999999998
Q ss_pred C
Q psy13635 334 K 334 (357)
Q Consensus 334 ~ 334 (357)
+
T Consensus 431 ~ 431 (433)
T 4hw6_A 431 P 431 (433)
T ss_dssp E
T ss_pred c
Confidence 6
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-25 Score=212.50 Aligned_cols=240 Identities=14% Similarity=0.200 Sum_probs=189.8
Q ss_pred CCCcEEEEEEEc-cCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCC----EEEE
Q psy13635 69 DLEEGAAIDYYY-KKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETN----KLEV 143 (357)
Q Consensus 69 ~~~~~~~i~~d~-~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~----~I~~ 143 (357)
.+..|.+|++|+ .++.||++|.. +.|+++++++.. ...+......|.+|++|+.++.||++|..++ .+..
T Consensus 135 ~~~~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~----v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~ 209 (430)
T 3tc9_A 135 GFGGAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEY----VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYI 209 (430)
T ss_dssp CCSCCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTE----EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEE
T ss_pred CCCCCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCE----EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEE
Confidence 477899999998 68999999988 899999999874 4555567889999999987777999998543 5666
Q ss_pred EEcCCCce--EEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEec-CCCCC
Q psy13635 144 SSLDGKKR--KVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVN-TDLVE 220 (357)
Q Consensus 144 ~~~~g~~~--~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~-~~~~~ 220 (357)
+..+|... ..+ ..+..|.++++|+.+++|||+|...++|+++++++.....+.. .....
T Consensus 210 ~~~~g~~~~~~~l------------------~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~ 271 (430)
T 3tc9_A 210 LTRESGFKVITEL------------------TKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGW 271 (430)
T ss_dssp EEGGGTSCSEEEE------------------EECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSC
T ss_pred EeCCCceeeeeee------------------ccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCc
Confidence 77777654 222 1346899999998899999999999999999999876633332 33467
Q ss_pred ceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCc-----eEEEeeC--------------CCCCce-EEEEec-------
Q psy13635 221 PRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGE-----RVLLVKD--------------RLGWPN-GITLDV------- 273 (357)
Q Consensus 221 P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~-----~~~~~~~--------------~l~~P~-giaid~------- 273 (357)
|++|+++|...+|||++... ++|++++.++.. ...+... .+..|. |++++.
T Consensus 272 P~gia~~pdG~~lyv~d~~~--~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D 349 (430)
T 3tc9_A 272 EFHIQFHPSGNYAYIVVVNQ--HYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSS 349 (430)
T ss_dssp CEEEEECTTSSEEEEEETTT--TEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSS
T ss_pred ceeEEEcCCCCEEEEEECCC--CEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccC
Confidence 99999999866799999985 599999998752 2223221 267899 899952
Q ss_pred CCCEEEEEeCCCCeEEEEeCCCCCeEEEecC-----------------CCCceEEEEEE--CCEEEEEeCCCCeEEEEeC
Q psy13635 274 DNEKLYWCDAKTDKIEMIDFDGNNRRELINE-----------------NLPHVFGISLL--GDYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 274 ~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~-----------------~~~~p~gia~~--~~~ly~td~~~~~I~~~~~ 334 (357)
.++.|||+|..+++|++++.+|.-.. +... ++.+|.||+++ ++.||++|..+++|+++++
T Consensus 350 ~~g~lyvaD~~n~~I~~i~~~G~v~~-~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 350 DEYDFYFCDRENHCIRILTPQGRVTT-FAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp CCEEEEEEEGGGTEEEEECTTSEEEE-EEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CCCeEEEEECCCcEEEEECCCCcEEE-EEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 46899999999999999998884333 3321 25689999999 4899999999999999986
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.94 E-value=7e-24 Score=201.68 Aligned_cols=242 Identities=14% Similarity=0.131 Sum_probs=187.5
Q ss_pred CCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCC-EEEEEEcC
Q psy13635 69 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETN-KLEVSSLD 147 (357)
Q Consensus 69 ~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~-~I~~~~~~ 147 (357)
.+..|.+|++|+ +++|||+|..++.|+++++++.. ...+......|. +++++.++.|||++...+ +|.+++.+
T Consensus 129 ~~~~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g~----~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~ 202 (409)
T 3hrp_A 129 KFKYMWGIAAVG-NNTVLAYQRDDPRVRLISVDDNK----VTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKA 202 (409)
T ss_dssp CCCCEEEEEECS-TTEEEEEETTTTEEEEEETTTTE----EEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGG
T ss_pred ccCCceEEEEeC-CCCEEEEecCCCcEEEEECCCCE----EEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcC
Confidence 477899999995 67899999999999999998764 334444456678 999999999999998665 99999988
Q ss_pred CCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEE----ecC-CCCCce
Q psy13635 148 GKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVL----VNT-DLVEPR 222 (357)
Q Consensus 148 g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~----~~~-~~~~P~ 222 (357)
+.......... .......|.++++|+.++.||+++. .++|+++++++.....+ ... ....|.
T Consensus 203 ~~~~~~~~g~~------------~~~~~~~p~~iav~p~~g~lyv~d~-~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~ 269 (409)
T 3hrp_A 203 SGWAPTRIGQL------------GSTFSGKIGAVALDETEEWLYFVDS-NKNFGRFNVKTQEVTLIKQLELSGSLGTNPG 269 (409)
T ss_dssp GTTCEEEEEEC------------CTTSCSCCCBCEECTTSSEEEEECT-TCEEEEEETTTCCEEEEEECCCCSCCCCSSC
T ss_pred CCceeEEeeec------------cchhcCCcEEEEEeCCCCeEEEEEC-CCcEEEEECCCCCEEEEecccccCCCCCCcc
Confidence 76542222110 0223468999999988999999876 67999999987765554 211 123467
Q ss_pred -EEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCC--------------CCCceEEEEecCCCEEEEEeC-CCC
Q psy13635 223 -AITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDR--------------LGWPNGITLDVDNEKLYWCDA-KTD 286 (357)
Q Consensus 223 -giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~--------------l~~P~giaid~~~~~lY~~d~-~~~ 286 (357)
+|+++|.+++||++|... ++|++++.+|. ...+.... +..|.||++|+ +++||++|. .++
T Consensus 270 ~~ia~~p~~g~lyv~d~~~--~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~-dG~lyvad~~~~~ 345 (409)
T 3hrp_A 270 PYLIYYFVDSNFYMSDQNL--SSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE-DGNFYIVDGFKGY 345 (409)
T ss_dssp CEEEEETTTTEEEEEETTT--TEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT-TCCEEEEETTTTC
T ss_pred ccEEEeCCCCEEEEEeCCC--CEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC-CCCEEEEeCCCCC
Confidence 999999789999999984 59999999987 33333332 67899999994 677999999 999
Q ss_pred eEEEEe-CCCCCeEEEecC--------------CCCceEEEEEEC-CEEEEEeCCCCeEEEEeC
Q psy13635 287 KIEMID-FDGNNRRELINE--------------NLPHVFGISLLG-DYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 287 ~I~~~~-~dG~~~~~i~~~--------------~~~~p~gia~~~-~~ly~td~~~~~I~~~~~ 334 (357)
+|++++ .+|. ...+... .+..|.||+++. +.||++|+.+++|+++..
T Consensus 346 ~I~~~~~~~G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 346 CLRKLDILDGY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEEETTTTE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEEEECCCCE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 999999 5554 3334332 267899999994 999999999999999875
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.1e-23 Score=196.15 Aligned_cols=243 Identities=13% Similarity=0.142 Sum_probs=185.0
Q ss_pred CCCcEEEEEEEc-cCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeC---CcCCceeEEE-------EcCCCeEEEEeCC
Q psy13635 69 DLEEGAAIDYYY-KKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN---GLITPDGLAI-------DWLTEKLYWTDSE 137 (357)
Q Consensus 69 ~~~~~~~i~~d~-~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~---~~~~p~glav-------d~~~~~ly~td~~ 137 (357)
.+..|.+|++|| .+++||+++...+.|+++++.+.. ..++... ++..|.+|++ |..++.||++|..
T Consensus 137 ~~~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~---v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~ 213 (496)
T 3kya_A 137 GFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM---LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDY 213 (496)
T ss_dssp CCCSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE---EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECC
T ss_pred ccCCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE---EEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCC
Confidence 466899999999 589999999988899999998874 2333333 3567999999 9877779999987
Q ss_pred CC------EEEEEEcC--CCceE----EEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEc
Q psy13635 138 TN------KLEVSSLD--GKKRK----VLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRL 205 (357)
Q Consensus 138 ~~------~I~~~~~~--g~~~~----~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~ 205 (357)
.+ .|.+++.+ |.... ..+ ..+.+|.|+++|+.++.||+++...++|+++++
T Consensus 214 ~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v-----------------~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~ 276 (496)
T 3kya_A 214 DGKGDESPSVYIIKRNADGTFDDRSDIQLI-----------------AAYKQCNGATIHPINGELYFNSYEKGQVFRLDL 276 (496)
T ss_dssp CTTGGGEEEEEEEECCTTSCCSTTSCEEEE-----------------EEESCCCCEEECTTTCCEEEEETTTTEEEEECH
T ss_pred CCCcccCceEEEEecCCCCceeecccceee-----------------ccCCCceEEEEcCCCCeEEEEECCCCEEEEEec
Confidence 62 36676433 34321 111 134589999999999999999999999999999
Q ss_pred C-------CCce------------EEEe-cCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCce-----EEEee
Q psy13635 206 E-------GTHR------------KVLV-NTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGER-----VLLVK 260 (357)
Q Consensus 206 ~-------g~~~------------~~~~-~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~-----~~~~~ 260 (357)
+ +... ..+. ......|.+|+++|....||++|+.. ++|++++.++... ..+..
T Consensus 277 ~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~--h~I~kid~dg~~~~~~~~~~~aG 354 (496)
T 3kya_A 277 VDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINN--HYFMRSDYDEIKKEFITPYNFVG 354 (496)
T ss_dssp HHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTT--TEEEEEEEETTTTEECCCEEEEE
T ss_pred ccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCC--CEEEEEecCCCcceecccEEecC
Confidence 7 3322 1222 23346799999999876799999985 5999999988642 23332
Q ss_pred --------------CCCCCce-EEEEec------CCCEEEEEeCCCCeEEEEeCCCCCeEEEecC---------------
Q psy13635 261 --------------DRLGWPN-GITLDV------DNEKLYWCDAKTDKIEMIDFDGNNRRELINE--------------- 304 (357)
Q Consensus 261 --------------~~l~~P~-giaid~------~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~--------------- 304 (357)
..|..|. |+++|. .++.||++|..+++|++++.+|. ...+...
T Consensus 355 ~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G~-v~TiaG~g~~~~~~~~~~~G~~ 433 (496)
T 3kya_A 355 GYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGI-VSTYAGRGASTSLADGNQWGTD 433 (496)
T ss_dssp BTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTCB-EEEEEESCTTHHHHHSCSCCCC
T ss_pred CCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCCC-EEEEecccccccccCccccccC
Confidence 1467899 888873 57899999999999999999884 3334321
Q ss_pred --------CCCceEEEEEEC--CEEEEEeCCCCeEEEEeC
Q psy13635 305 --------NLPHVFGISLLG--DYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 305 --------~~~~p~gia~~~--~~ly~td~~~~~I~~~~~ 334 (357)
++.+|.||+++. +.||++|..+++|++++.
T Consensus 434 dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~ 473 (496)
T 3kya_A 434 DGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISM 473 (496)
T ss_dssp CEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred CCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEEC
Confidence 367899999994 899999999999999997
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-23 Score=185.39 Aligned_cols=240 Identities=18% Similarity=0.254 Sum_probs=185.6
Q ss_pred cEEEEEEEccCCEEEE-EeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCc
Q psy13635 72 EGAAIDYYYKKSMVCW-TDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKK 150 (357)
Q Consensus 72 ~~~~i~~d~~~~~ly~-~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~ 150 (357)
.|.++++++. ++||+ ++...+.|.+++.++.. .......++..|.++++|+ .++||+++. .++|.+++.++..
T Consensus 25 ~p~~i~~~~~-g~l~v~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 25 SPSGVAVDSA-GNVYVTSEGMYGRVVKLATGSTG---TTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNN 98 (270)
T ss_dssp CEEEEEECTT-CCEEEEECSSSCEEEEECC--------EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSC
T ss_pred CccceEECCC-CCEEEEccCCCCcEEEecCCCcc---cceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCce
Confidence 9999999974 56999 88888999999876653 1222234567899999997 567999998 8899999998876
Q ss_pred eEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCC
Q psy13635 151 RKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAH 230 (357)
Q Consensus 151 ~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~ 230 (357)
...+. ...+..|.++++|+ +++||+++...++|.+++.............+..|.+|++++.
T Consensus 99 ~~~~~----------------~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~- 160 (270)
T 1rwi_B 99 QTVLP----------------FDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNS- 160 (270)
T ss_dssp CEECC----------------CCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTT-
T ss_pred Eeeee----------------cCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCC-
Confidence 54432 22335799999996 6689999998889999965544333333345678999999984
Q ss_pred CEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceE
Q psy13635 231 GYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVF 310 (357)
Q Consensus 231 g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~ 310 (357)
|+||+++... +.|.+++.++..........+..|.+|++|+ +++||+++...++|.+++.+|.....+....+..|.
T Consensus 161 g~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~ 237 (270)
T 1rwi_B 161 GNVYVTDTDN--NRVVKLEAESNNQVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPL 237 (270)
T ss_dssp CCEEEEEGGG--TEEEEECTTTCCEEECCCSSCCSEEEEEECT-TCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEE
T ss_pred CCEEEEECCC--CEEEEEecCCCceEeecccCCCCceEEEECC-CCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCce
Confidence 7899999874 5999999998766555445668899999994 669999999999999999998766544434567899
Q ss_pred EEEEE-CCEEEEEeCCCCeEEEEeCccCc
Q psy13635 311 GISLL-GDYVYWTDWQRRSIDRVNKITGN 338 (357)
Q Consensus 311 gia~~-~~~ly~td~~~~~I~~~~~~~g~ 338 (357)
+++++ +|.+|+++..+++|.++++...+
T Consensus 238 ~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 238 AVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred eEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 99998 57899999999999999985443
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.3e-23 Score=188.41 Aligned_cols=253 Identities=15% Similarity=0.081 Sum_probs=187.0
Q ss_pred ccCCCcEEEEEEEccCCEEEEEeCCC------------------------CeEEEEEcCCCCcceeEEEE-eCCcCCcee
Q psy13635 67 IKDLEEGAAIDYYYKKSMVCWTDHGT------------------------EMISCCTFDGNNVGSKHNVI-TNGLITPDG 121 (357)
Q Consensus 67 ~~~~~~~~~i~~d~~~~~ly~~d~~~------------------------~~I~~~~~~g~~~~~~~~~~-~~~~~~p~g 121 (357)
...+..+.+|++++ +++||+++..+ +.|+.++.+... ..... ...+..|.+
T Consensus 20 ~~~l~~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~p~g 95 (329)
T 3fvz_A 20 YLLPGQVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAE---ILQSSGKNLFYLPHG 95 (329)
T ss_dssp GCCCSCEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCC---EEEEECTTTCSSEEE
T ss_pred ceecCCceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCe---EEeccCCCccCCceE
Confidence 34678899999997 57899999877 368888886442 12222 245678999
Q ss_pred EEEEcCCCeEEEEeCCCCEEEEEEcCCCc--eEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeC-CCC
Q psy13635 122 LAIDWLTEKLYWTDSETNKLEVSSLDGKK--RKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDT-GTD 198 (357)
Q Consensus 122 lavd~~~~~ly~td~~~~~I~~~~~~g~~--~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~-~~~ 198 (357)
+++|+ .++||++|..+++|.+++.+|.. ...+...+.. +. ....+..|.+|++|+.+++||++|. ..+
T Consensus 96 ia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~---g~-----~~~~~~~P~~ia~~~~~g~lyv~d~~~~~ 166 (329)
T 3fvz_A 96 LSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQP---GS-----DQNHFCQPTDVAVEPSTGAVFVSDGYCNS 166 (329)
T ss_dssp EEECT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBC---CC-----STTCCSSEEEEEECTTTCCEEEEECSSCC
T ss_pred EEECC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCC---CC-----CccccCCCcEEEEeCCCCeEEEEeCCCCC
Confidence 99996 66799999999999999999873 3333211100 00 0235568999999987899999996 789
Q ss_pred eEEEEEcCCCceEEEec---------CCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecC-CCceEEEeeC-CCCCce
Q psy13635 199 RIEVCRLEGTHRKVLVN---------TDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLN-GGERVLLVKD-RLGWPN 267 (357)
Q Consensus 199 ~I~~~~~~g~~~~~~~~---------~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~d-g~~~~~~~~~-~l~~P~ 267 (357)
+|.+++.+|.....+.. ..+..|.+|++||.+|+||+++... .+|.+.+.+ |.....+... ....|.
T Consensus 167 ~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~--~~I~~~~~~~G~~~~~~~~~~~~~~~~ 244 (329)
T 3fvz_A 167 RIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADREN--GRIQCFKTDTKEFVREIKHASFGRNVF 244 (329)
T ss_dssp EEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTT--TEEEEEETTTCCEEEEECCTTTTTCEE
T ss_pred eEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCC--CEEEEEECCCCcEEEEEeccccCCCcc
Confidence 99999999987776642 2345699999998779999999984 599999998 6655555322 223466
Q ss_pred EEEEec-----CCCEEEEEeCCCCeEEEEeCC-CCCeEEEe--cCCCCceEEEEEE-CCEEEEEeCCCCeEEEEeC
Q psy13635 268 GITLDV-----DNEKLYWCDAKTDKIEMIDFD-GNNRRELI--NENLPHVFGISLL-GDYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 268 giaid~-----~~~~lY~~d~~~~~I~~~~~d-G~~~~~i~--~~~~~~p~gia~~-~~~ly~td~~~~~I~~~~~ 334 (357)
++++.+ .++++|+++...++|..++.. |.....+. ...+..|.+|+++ +|.||++|..+++|++++.
T Consensus 245 ~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~ 320 (329)
T 3fvz_A 245 AISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTL 320 (329)
T ss_dssp EEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred eeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence 665553 244566666667799999964 44443332 2467889999998 5799999999999999987
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-22 Score=191.53 Aligned_cols=241 Identities=13% Similarity=0.133 Sum_probs=183.2
Q ss_pred EEeecCC-CCeEEEEEeC-CcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCC----eEEEEEcCCCCcc
Q psy13635 33 YALSHHV-AAQMLLFATS-KDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTE----MISCCTFDGNNVG 106 (357)
Q Consensus 33 ~~~~~~~-~~~~l~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~----~I~~~~~~g~~~~ 106 (357)
.+++.++ ....|++++. +.|+++|+++ .....+......|.+|++++.++.|||+|..++ .+..+..+|...
T Consensus 140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~-~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~- 217 (430)
T 3tc9_A 140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEK-EYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFK- 217 (430)
T ss_dssp CEEEEETTEEEEEEEEEBTEEEEEEETTT-TEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSC-
T ss_pred CEEEECCCCCCeEEEEeCCCcEEEEECCC-CEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCcee-
Confidence 3444554 3567888887 7899999977 455666678889999999998888999998544 467777777641
Q ss_pred eeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCC
Q psy13635 107 SKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWV 186 (357)
Q Consensus 107 ~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~ 186 (357)
....+. .+..|.++++|+.++.||++|..+++|.++++++.....+...+ ....|.+|++|+.
T Consensus 218 -~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~---------------~~~~P~gia~~pd 280 (430)
T 3tc9_A 218 -VITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ---------------DSGWEFHIQFHPS 280 (430)
T ss_dssp -SEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS---------------SSSCCEEEEECTT
T ss_pred -eeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC---------------CCCcceeEEEcCC
Confidence 112332 47789999999889999999999999999999987654333221 2247999999988
Q ss_pred CCeEEEEeCCCCeEEEEEcCCCc-----eEEEec--------------CCCCCce-EEEEeC-------CCCEEEEEeCC
Q psy13635 187 ARNLYWTDTGTDRIEVCRLEGTH-----RKVLVN--------------TDLVEPR-AITLSP-------AHGYLFWSDWN 239 (357)
Q Consensus 187 ~~~lY~td~~~~~I~~~~~~g~~-----~~~~~~--------------~~~~~P~-giavd~-------~~g~Ly~~d~~ 239 (357)
++.|||++...++|.+++.++.. ...+.. ..+..|. +++++. ..|.||++|++
T Consensus 281 G~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~ 360 (430)
T 3tc9_A 281 GNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRE 360 (430)
T ss_dssp SSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGG
T ss_pred CCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECC
Confidence 88899999999999999998742 122221 1267899 899963 35899999998
Q ss_pred CCCCeEEEEecCCCceEEEee---------C-------CCCCceEEEEecCCCEEEEEeCCCCeEEEEeCC
Q psy13635 240 EKRPKIERSLLNGGERVLLVK---------D-------RLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFD 294 (357)
Q Consensus 240 ~~~~~I~~~~~dg~~~~~~~~---------~-------~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~d 294 (357)
. ++|.+++.+|......-. . .+..|.||++|+.++.||++|..+++|++++++
T Consensus 361 n--~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 361 N--HCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp G--TEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred C--cEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 4 599999988743333321 1 166899999997689999999999999999875
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.6e-22 Score=188.08 Aligned_cols=239 Identities=10% Similarity=0.090 Sum_probs=178.3
Q ss_pred EEeecCC--CCeEEEEEeC-CcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCC----CeEEEEEcCCCCc
Q psy13635 33 YALSHHV--AAQMLLFATS-KDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGT----EMISCCTFDGNNV 105 (357)
Q Consensus 33 ~~~~~~~--~~~~l~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~----~~I~~~~~~g~~~ 105 (357)
.+++..+ ....|++++. +.|+++++.+ .........+..|.+|++++.++ ||++|..+ ..+..+..++...
T Consensus 142 ~gvavd~~s~~g~Lyv~D~~~~I~~id~~~-g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~ 219 (433)
T 4hw6_A 142 WRMMFDPNSNYDDLYWVGQRDAFRHVDFVN-QYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFT 219 (433)
T ss_dssp CEEEECTTTTTCEEEEECBTSCEEEEETTT-TEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTC
T ss_pred ceEEEccccCCCEEEEEeCCCCEEEEECCC-CEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCee
Confidence 3455554 2467888886 7899999955 45666677888999999999766 99999753 2366666665531
Q ss_pred ceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcC-CCceEEEEecCCCCcceeeeeccCcccccCCceEEEe
Q psy13635 106 GSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD-GKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVD 184 (357)
Q Consensus 106 ~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~-g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD 184 (357)
....+. .+..|.++++|+.+++|||+|..+++|++++.+ |.....+...+ ....+.+|++|
T Consensus 220 --~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~---------------~~~~~~~ia~d 281 (433)
T 4hw6_A 220 --ERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMD---------------TKGSNFHIVWH 281 (433)
T ss_dssp --CEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECS---------------CCSSCEEEEEC
T ss_pred --cccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccC---------------CCCCcccEEEe
Confidence 122333 578999999998899999999999999999998 55424443222 11356789999
Q ss_pred CCCCeEEEEeCCCCeEEEEEcCCCc-----eEEEecC--------------CCCCceEEEE---------eCCCCEEEEE
Q psy13635 185 WVARNLYWTDTGTDRIEVCRLEGTH-----RKVLVNT--------------DLVEPRAITL---------SPAHGYLFWS 236 (357)
Q Consensus 185 ~~~~~lY~td~~~~~I~~~~~~g~~-----~~~~~~~--------------~~~~P~giav---------d~~~g~Ly~~ 236 (357)
+.++.|||+|...++|.++++++.. ...+... .+..|.++++ | ..|.||++
T Consensus 282 pdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd-~~g~lyva 360 (433)
T 4hw6_A 282 PTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE-DEYDFYFC 360 (433)
T ss_dssp TTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS-CCEEEEEE
T ss_pred CCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccC-CCCcEEEE
Confidence 8888899999999999999987531 1222221 3678999999 6 46999999
Q ss_pred eCCCCCCeEEEEecCCCceEEEee----------------CCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCC
Q psy13635 237 DWNEKRPKIERSLLNGGERVLLVK----------------DRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFD 294 (357)
Q Consensus 237 d~~~~~~~I~~~~~dg~~~~~~~~----------------~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~d 294 (357)
|+.. ++|.+++.+|......-. ..+.+|.||++|+.++.||++|..+++|++++++
T Consensus 361 D~~n--~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 361 DRDS--HTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp ETTT--TEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred ECCC--CEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 9994 599999998843332211 1267899999998899999999999999999864
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.4e-21 Score=172.16 Aligned_cols=258 Identities=17% Similarity=0.185 Sum_probs=198.2
Q ss_pred CCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEE-EEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcC
Q psy13635 69 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHN-VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD 147 (357)
Q Consensus 69 ~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~ 147 (357)
....|.+|++++ ++.||+++...+.|.+++.++.. .. .+......|.++++|+ .+++|+++...++|.+++.+
T Consensus 18 ~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~ 91 (300)
T 2qc5_A 18 PDSGPYGITSSE-DGKVWFTQHKANKISSLDQSGRI----KEFEVPTPDAKVMCLIVSS-LGDIWFTENGANKIGKLSKK 91 (300)
T ss_dssp TTCCEEEEEECT-TSCEEEEETTTTEEEEECTTSCE----EEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTT
T ss_pred CCCCcceeeECC-CCCEEEEcCCCCeEEEECCCCce----EEEECCCCCCcceeEEECC-CCCEEEEecCCCeEEEECCC
Confidence 456899999997 57899999988999999988432 22 2234457899999994 77899999988999999998
Q ss_pred CCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEe
Q psy13635 148 GKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLS 227 (357)
Q Consensus 148 g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd 227 (357)
|....... ......|.++++|+ .++||+++...+.|.+++++|+............|.++++|
T Consensus 92 g~~~~~~~----------------~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d 154 (300)
T 2qc5_A 92 GGFTEYPL----------------PQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLG 154 (300)
T ss_dssp SCEEEEEC----------------SSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEEC
T ss_pred CCeEEecC----------------CCCCCCCccceECC-CCCEEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEEEC
Confidence 65432221 11224799999994 67899999988899999999765544444456789999999
Q ss_pred CCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCC
Q psy13635 228 PAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLP 307 (357)
Q Consensus 228 ~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~ 307 (357)
+. |+||+++... +.|.+++.+|.............|.+|++| .+++||+++...+.|.+++.+|............
T Consensus 155 ~~-g~l~v~~~~~--~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d-~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~ 230 (300)
T 2qc5_A 155 SD-NALWFTENQN--NSIGRITNTGKLEEYPLPTNAAAPVGITSG-NDGALWFVEIMGNKIGRITTTGEISEYDIPTPNA 230 (300)
T ss_dssp TT-SSEEEEETTT--TEEEEECTTCCEEEEECSSTTCCEEEEEEC-TTSSEEEEETTTTEEEEECTTCCEEEEECSSTTC
T ss_pred CC-CCEEEEecCC--CeEEEECCCCcEEEeeCCCCCCCcceEEEC-CCCCEEEEccCCCEEEEEcCCCcEEEEECCCCCC
Confidence 75 7799999874 599999997765543333456789999999 4789999999999999999977655433444577
Q ss_pred ceEEEEEE-CCEEEEEeCCCCeEEEEeCccCceeEEE-ecccCCceeee
Q psy13635 308 HVFGISLL-GDYVYWTDWQRRSIDRVNKITGNDREVI-IERSCTGVTRR 354 (357)
Q Consensus 308 ~p~gia~~-~~~ly~td~~~~~I~~~~~~~g~~~~~i-~~~l~~p~~i~ 354 (357)
.|.+|+++ +|.||+++...+.|.+++. +|+..... ..+...|.+|.
T Consensus 231 ~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~ 278 (300)
T 2qc5_A 231 RPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGIT 278 (300)
T ss_dssp CEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEE
T ss_pred CceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeE
Confidence 89999998 5889999998899999998 67665442 23456676664
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.1e-21 Score=171.40 Aligned_cols=272 Identities=15% Similarity=0.163 Sum_probs=202.8
Q ss_pred EEEeecCCCCeEEEEEeC--CcEEEEEcCCCCcceEec-cCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCccee
Q psy13635 32 WYALSHHVAAQMLLFATS--KDIRIANLSRPLKPVTII-KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSK 108 (357)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~--~~i~~~~~~~~~~~~~~~-~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~ 108 (357)
..+++..+.. .+++++. +.|.+++..+ ....... .....|.++++++ ++.||+++...+.|++++.+|..
T Consensus 22 p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~g~~---- 94 (300)
T 2qc5_A 22 PYGITSSEDG-KVWFTQHKANKISSLDQSG-RIKEFEVPTPDAKVMCLIVSS-LGDIWFTENGANKIGKLSKKGGF---- 94 (300)
T ss_dssp EEEEEECTTS-CEEEEETTTTEEEEECTTS-CEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTTSCE----
T ss_pred cceeeECCCC-CEEEEcCCCCeEEEECCCC-ceEEEECCCCCCcceeEEECC-CCCEEEEecCCCeEEEECCCCCe----
Confidence 3455554433 3566653 6799999873 2222222 3457899999995 67899999988999999988542
Q ss_pred EEEE-eCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCC
Q psy13635 109 HNVI-TNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVA 187 (357)
Q Consensus 109 ~~~~-~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~ 187 (357)
.... ......|.++++|+ .++||+++...+.|.+++.+|....... ......|.++++|+ .
T Consensus 95 ~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~----------------~~~~~~~~~i~~d~-~ 156 (300)
T 2qc5_A 95 TEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTADGTIYEYDL----------------PNKGSYPAFITLGS-D 156 (300)
T ss_dssp EEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTTSCEEEEEC----------------SSTTCCEEEEEECT-T
T ss_pred EEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCCCCEEEccC----------------CCCCCCceeEEECC-C
Confidence 2222 22447899999995 7889999998899999999865543321 12235799999995 5
Q ss_pred CeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCce
Q psy13635 188 RNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPN 267 (357)
Q Consensus 188 ~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~ 267 (357)
++||+++...+.|.+++.+|+............|.++++|+ +|.||+++... +.|.+++.+|.............|.
T Consensus 157 g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~--~~i~~~~~~g~~~~~~~~~~~~~~~ 233 (300)
T 2qc5_A 157 NALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGN-DGALWFVEIMG--NKIGRITTTGEISEYDIPTPNARPH 233 (300)
T ss_dssp SSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECT-TSSEEEEETTT--TEEEEECTTCCEEEEECSSTTCCEE
T ss_pred CCEEEEecCCCeEEEECCCCcEEEeeCCCCCCCcceEEECC-CCCEEEEccCC--CEEEEEcCCCcEEEEECCCCCCCce
Confidence 66999999888999999987766544444567899999997 58999999874 5899999976655443444578899
Q ss_pred EEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEE-CCEEEEEeCCCCeEEEEeC
Q psy13635 268 GITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLL-GDYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 268 giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~-~~~ly~td~~~~~I~~~~~ 334 (357)
+|++| .+++||+++...+.|.+++.+|.............|.+|+++ +|.||+++. + .|.++++
T Consensus 234 ~i~~d-~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 234 AITAG-KNSEIWFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp EEEEC-STTCEEEEETTTTEEEEECTTSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred EEEEC-CCCCEEEeccCCCeEEEECCCCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 99999 467899999988999999997754433233346789999998 589999998 5 9999876
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.4e-22 Score=180.58 Aligned_cols=210 Identities=12% Similarity=0.146 Sum_probs=162.4
Q ss_pred CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEe---CCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEE
Q psy13635 49 SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTD---HGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAID 125 (357)
Q Consensus 49 ~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d---~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd 125 (357)
++.|++++++++. .+.+..... .++.+.+++|||++ .....|++++++|+. .+.+..... ++++
T Consensus 87 ~~~Iy~i~~dg~~-~~~l~~~~~----~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~----~~~lt~~~~----~~~~ 153 (302)
T 3s25_A 87 RNSLCRIKRNGHG-STVLDPDPC----IYASLIGNYIYYLHYDTQTATSLYRIRIDGEE----KKKIKNHYL----FTCN 153 (302)
T ss_dssp SEEEEEEETTSCC-CEEEECSCE----EEEEEETTEEEEEEESSSSCEEEEEEETTSCC----CEEEESSCC----CCSE
T ss_pred CCeEEEEeCCCCc-ceEeecCCc----cEEEEeCCEEEEEeecCCCCceEEEEECCCCC----eEEEeCCCc----eEee
Confidence 3579999999954 555544432 24556789999999 567799999999986 444443322 4678
Q ss_pred cCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCC-CeEEEEE
Q psy13635 126 WLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGT-DRIEVCR 204 (357)
Q Consensus 126 ~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~-~~I~~~~ 204 (357)
|.+++|||++.+..+|.+++++|..++.+.. .+...+++|.++.|||++... .+|++++
T Consensus 154 ~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--------------------~~~~~~~~P~g~~iy~t~~~~~~~I~~~~ 213 (302)
T 3s25_A 154 TSDRYFYYNNPKNGQLYRYDTASQSEALFYD--------------------CNCYKPVVLDDTNVYYMDVNRDNAIVHVN 213 (302)
T ss_dssp EETTEEEEECTTTCCEEEEETTTTEEEEEEC--------------------SCEEEEEEEETTEEEEEEGGGTTEEEEEC
T ss_pred EECCEEEEEeCCCceEEEEECCCCCEEEEeC--------------------CCccceeeecCCEEEEEEcCCCcEEEEEE
Confidence 8999999999988999999999998887742 122334567899999999865 4899999
Q ss_pred cCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCC
Q psy13635 205 LEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAK 284 (357)
Q Consensus 205 ~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~ 284 (357)
++|+.++++..+.+ |. ++|.+++|||++.... ..|+++++||+.++.+.... ..+|+ +.++.|||+|..
T Consensus 214 ldG~~~~~Lt~~~~--~~---~~~~g~~Iy~~~~~~~-~~i~~~~~DG~~r~~l~~~~---~~~i~--i~~d~Iy~td~~ 282 (302)
T 3s25_A 214 INNPNPVVLTEANI--EH---YNVYGSLIFYQRGGDN-PALCVVKNDGTGFKELAKGE---FCNIN--VTSQYVYFTDFV 282 (302)
T ss_dssp SSSCCCEECSCSCE--EE---EEEETTEEEEEECSSS-CEEEEEETTSCCCEEEEESC---EEEEE--ECSSEEEEEETT
T ss_pred CCCCCeEEEeCCCc--ce---EEECCCEEEEEECCCC-cEEEEEECCCCccEEeeCCc---cceEE--EeCCEEEEEECC
Confidence 99999888775443 43 6777899999854433 69999999999998887542 33444 589999999999
Q ss_pred CCeEEEEeCCCCCeEEEe
Q psy13635 285 TDKIEMIDFDGNNRRELI 302 (357)
Q Consensus 285 ~~~I~~~~~dG~~~~~i~ 302 (357)
.+.|+++++||+++..+.
T Consensus 283 ~~~i~~~~~dGs~~~~l~ 300 (302)
T 3s25_A 283 SNKEYCTSTQNPDTIKAL 300 (302)
T ss_dssp TCCEEEEESSSCCSCEEC
T ss_pred CCeEEEEECCCCCceEec
Confidence 999999999999987665
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.5e-21 Score=182.30 Aligned_cols=241 Identities=13% Similarity=0.126 Sum_probs=178.2
Q ss_pred EEEeecCCCCeEEEEEeC--CcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCC-eEEEEEcCCCCccee
Q psy13635 32 WYALSHHVAAQMLLFATS--KDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTE-MISCCTFDGNNVGSK 108 (357)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~-~I~~~~~~g~~~~~~ 108 (357)
..+++.++. ..|++++. +.|+++|+++ ............+. +++++.++.|||++...+ .|++++.++...
T Consensus 133 P~~la~d~~-g~lyv~d~~~~~I~~id~~~-g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~--- 206 (409)
T 3hrp_A 133 MWGIAAVGN-NTVLAYQRDDPRVRLISVDD-NKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA--- 206 (409)
T ss_dssp EEEEEECST-TEEEEEETTTTEEEEEETTT-TEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC---
T ss_pred ceEEEEeCC-CCEEEEecCCCcEEEEECCC-CEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce---
Confidence 445555533 34777775 6799999976 34444445566677 999999999999998665 999999987641
Q ss_pred EEEE----eCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCc-eEEE
Q psy13635 109 HNVI----TNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPD-GVAV 183 (357)
Q Consensus 109 ~~~~----~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~-glav 183 (357)
...+ ......|.++++|+.++.||+++. +++|.++++++.....+...... ......|. +|++
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~-~~~I~~~d~~~~~~~~~~~~~~~-----------g~~~~~P~~~ia~ 274 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDS-NKNFGRFNVKTQEVTLIKQLELS-----------GSLGTNPGPYLIY 274 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECT-TCEEEEEETTTCCEEEEEECCCC-----------SCCCCSSCCEEEE
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEEC-CCcEEEEECCCCCEEEEeccccc-----------CCCCCCccccEEE
Confidence 2222 225678999999988999999876 78999999987765544222111 01112366 9999
Q ss_pred eCCCCeEEEEeCCCCeEEEEEcCCCceEEEecC-------------CCCCceEEEEeCCCCEEEEEeC-CCCCCeEEEEe
Q psy13635 184 DWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNT-------------DLVEPRAITLSPAHGYLFWSDW-NEKRPKIERSL 249 (357)
Q Consensus 184 D~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~-------------~~~~P~giavd~~~g~Ly~~d~-~~~~~~I~~~~ 249 (357)
|+.+++||++|...++|.+++++|......... .+..|.||++|+. |.||++|. .. ++|.+++
T Consensus 275 ~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d-G~lyvad~~~~--~~I~~~~ 351 (409)
T 3hrp_A 275 YFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDED-GNFYIVDGFKG--YCLRKLD 351 (409)
T ss_dssp ETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT-CCEEEEETTTT--CEEEEEE
T ss_pred eCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC-CCEEEEeCCCC--CEEEEEE
Confidence 988899999999999999999999844333221 1678999999986 78999999 74 5999999
Q ss_pred cCCCceEEEeeC--------------CCCCceEEEEecCCCEEEEEeCCCCeEEEEeCC
Q psy13635 250 LNGGERVLLVKD--------------RLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFD 294 (357)
Q Consensus 250 ~dg~~~~~~~~~--------------~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~d 294 (357)
+.......+... .+..|.||++|+ ++.||++|..+++|+++.++
T Consensus 352 ~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 352 ILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp TTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEEC
T ss_pred CCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEeC
Confidence 443344444432 267899999995 49999999999999998753
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.5e-20 Score=166.74 Aligned_cols=276 Identities=16% Similarity=0.165 Sum_probs=200.4
Q ss_pred EEEeecCCCCeEEEEEeC--CcEEEEEcCCCCcceEec-cCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCccee
Q psy13635 32 WYALSHHVAAQMLLFATS--KDIRIANLSRPLKPVTII-KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSK 108 (357)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~--~~i~~~~~~~~~~~~~~~-~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~ 108 (357)
..+++..+... +++++. +.|.++|.++ ....... .....|.++++++ ++.+|+++...+.|++++.+|..
T Consensus 17 ~~~i~~d~~g~-l~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~---- 89 (299)
T 2z2n_A 17 PYGITVSDKGK-VWITQHKANMISCINLDG-KITEYPLPTPDAKVMCLTISS-DGEVWFTENAANKIGRITKKGII---- 89 (299)
T ss_dssp EEEEEECTTSC-EEEEETTTTEEEEECTTC-CEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTTSCE----
T ss_pred ccceEECCCCC-EEEEecCCCcEEEEcCCC-CeEEecCCcccCceeeEEECC-CCCEEEeCCCCCeEEEECCCCcE----
Confidence 34555554433 555653 5699999873 3222222 2457899999997 67899999888899999988652
Q ss_pred EEEE-eCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCC
Q psy13635 109 HNVI-TNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVA 187 (357)
Q Consensus 109 ~~~~-~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~ 187 (357)
.... ......|.++++|+ .++||+++...+.|.+++.+|....... ......|.++++|+ +
T Consensus 90 ~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~~g~~~~~~~----------------~~~~~~~~~i~~~~-~ 151 (299)
T 2z2n_A 90 KEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITDDGKIREYEL----------------PNKGSYPSFITLGS-D 151 (299)
T ss_dssp EEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTTCCEEEEEC----------------SSTTCCEEEEEECT-T
T ss_pred EEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECCCCCEEEecC----------------CCCCCCCceEEEcC-C
Confidence 2222 23456899999996 6789999988899999999766543322 12234789999995 5
Q ss_pred CeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCce
Q psy13635 188 RNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPN 267 (357)
Q Consensus 188 ~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~ 267 (357)
+++|+++...+.|.+++++|+............|.++++|+. |.||+++... +.|.+++.+|.............|.
T Consensus 152 g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~--~~i~~~~~~g~~~~~~~~~~~~~~~ 228 (299)
T 2z2n_A 152 NALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITKGND-DALWFVEIIG--NKIGRITTSGEITEFKIPTPNARPH 228 (299)
T ss_dssp SCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTT-SSEEEEETTT--TEEEEECTTCCEEEEECSSTTCCEE
T ss_pred CCEEEEeCCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCC-CCEEEEccCC--ceEEEECCCCcEEEEECCCCCCCce
Confidence 699999988889999999766554434445678999999975 8899999874 5999999966533322333567899
Q ss_pred EEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEECCEEEEEeCCCCeEEEEeCccC
Q psy13635 268 GITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITG 337 (357)
Q Consensus 268 giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~~~~ly~td~~~~~I~~~~~~~g 337 (357)
+|++| .+++||+++...+.|.+++++|.............|.++++.++.+|+++. .+.|.+++..++
T Consensus 229 ~i~~~-~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 229 AITAG-AGIDLWFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICFDGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp EEEEC-STTCEEEEETTTTEEEEEETTTEEEEEECSSSSCCEEEEEECSSCEEEEET-TTEEEEEEEC--
T ss_pred eEEEC-CCCCEEEeccCCceEEEECCCCceEEEeCCCCCCccceEEecCCCEEEEec-CCcEEEEEcCcc
Confidence 99999 567899999888999999997643322233346789999995589999986 578999987443
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-20 Score=169.14 Aligned_cols=240 Identities=14% Similarity=0.189 Sum_probs=188.8
Q ss_pred cCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEe------CCcCCceeEEEEcCCCeEEEEeCC-CCE
Q psy13635 68 KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT------NGLITPDGLAIDWLTEKLYWTDSE-TNK 140 (357)
Q Consensus 68 ~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~------~~~~~p~glavd~~~~~ly~td~~-~~~ 140 (357)
..+..|.++++++ ++.||+++..++.|.+++.+|.. ...+. ..+..|.+++++..+++||+++.. +++
T Consensus 27 g~~~~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~g~~----~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~ 101 (286)
T 1q7f_A 27 GQFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKEGRF----KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ 101 (286)
T ss_dssp TCBSCEEEEEECT-TCCEEEEEGGGTEEEEECTTSCE----EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCE
T ss_pred CccCCCceEEECC-CCCEEEEECCCCEEEEECCCCcE----EEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCE
Confidence 3567899999997 46799999999999999988653 22222 234689999997678999999975 789
Q ss_pred EEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEec-CCCC
Q psy13635 141 LEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVN-TDLV 219 (357)
Q Consensus 141 I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~-~~~~ 219 (357)
|.+++.+|.....+. ......|.++++|+ .++||+++...++|.+++.+|.....+.. ..+.
T Consensus 102 i~~~d~~g~~~~~~~----------------~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~ 164 (286)
T 1q7f_A 102 IQIYNQYGQFVRKFG----------------ATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLE 164 (286)
T ss_dssp EEEECTTSCEEEEEC----------------TTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTTSCEEEEEECTTTCS
T ss_pred EEEECCCCcEEEEec----------------CccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccC
Confidence 999998887655442 22335799999996 56899999988999999999887665543 3567
Q ss_pred CceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeC-CCCCceEEEEecCCCEEEEEeCCCC-eEEEEeCCCCC
Q psy13635 220 EPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKD-RLGWPNGITLDVDNEKLYWCDAKTD-KIEMIDFDGNN 297 (357)
Q Consensus 220 ~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~-~l~~P~giaid~~~~~lY~~d~~~~-~I~~~~~dG~~ 297 (357)
.|.+|++|+. |+||+++... ..|.+.+.+|.....+... .+..|.+|++| .+++||+++...+ +|.+++.+|..
T Consensus 165 ~p~~i~~~~~-g~l~v~~~~~--~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d-~~G~l~v~~~~~~~~i~~~~~~g~~ 240 (286)
T 1q7f_A 165 FPNGVVVNDK-QEIFISDNRA--HCVKVFNYEGQYLRQIGGEGITNYPIGVGIN-SNGEILIADNHNNFNLTIFTQDGQL 240 (286)
T ss_dssp SEEEEEECSS-SEEEEEEGGG--TEEEEEETTCCEEEEESCTTTSCSEEEEEEC-TTCCEEEEECSSSCEEEEECTTSCE
T ss_pred CcEEEEECCC-CCEEEEECCC--CEEEEEcCCCCEEEEEccCCccCCCcEEEEC-CCCCEEEEeCCCCEEEEEECCCCCE
Confidence 8999999985 8999999874 5999999988766555433 25789999999 4779999999886 99999999877
Q ss_pred eEEEecC-CCCceEEEEEE-CCEEEEEeCCCCeEEEEeC
Q psy13635 298 RRELINE-NLPHVFGISLL-GDYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 298 ~~~i~~~-~~~~p~gia~~-~~~ly~td~~~~~I~~~~~ 334 (357)
...+... ....|.+++++ +|.+|+++. .++|..++.
T Consensus 241 ~~~~~~~~~~~~~~~i~~~~~g~l~vs~~-~~~v~v~~~ 278 (286)
T 1q7f_A 241 ISALESKVKHAQCFDVALMDDGSVVLASK-DYRLYIYRY 278 (286)
T ss_dssp EEEEEESSCCSCEEEEEEETTTEEEEEET-TTEEEEEEC
T ss_pred EEEEcccCCCCcceeEEECCCCcEEEECC-CCeEEEEEc
Confidence 6655432 23469999998 589999985 678887775
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-21 Score=178.73 Aligned_cols=244 Identities=15% Similarity=0.103 Sum_probs=182.8
Q ss_pred CCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeC-------------------CcCCceeEEEEcCCC
Q psy13635 69 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN-------------------GLITPDGLAIDWLTE 129 (357)
Q Consensus 69 ~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~-------------------~~~~p~glavd~~~~ 129 (357)
.+..|.++++|+. +.++|++..++.|++++.++.. ....... ....|.||++|+.++
T Consensus 17 ~~~~p~~i~~d~~-g~~l~v~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g 92 (322)
T 2fp8_A 17 PSYAPNSFTFDST-NKGFYTSVQDGRVIKYEGPNSG---FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN 92 (322)
T ss_dssp SSSCCCCEECCTT-CSSEEEECTTSEEEEECCTTTC---EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT
T ss_pred ccCCceEEEEcCC-CCEEEEEcCCCeEEEECCCCCc---eEEEecccccccccccccccchhccccCCCCceEEEcCCCC
Confidence 4678999999974 7788899999999999888753 1222211 134799999997678
Q ss_pred eEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC-------------
Q psy13635 130 KLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG------------- 196 (357)
Q Consensus 130 ~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~------------- 196 (357)
+||++|.. +.|.+++.++...+.+.... ....+..|+++++|+..|+||+++..
T Consensus 93 ~l~v~d~~-~~i~~~d~~~g~~~~~~~~~------------~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~ 159 (322)
T 2fp8_A 93 QLYIVDCY-YHLSVVGSEGGHATQLATSV------------DGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD 159 (322)
T ss_dssp EEEEEETT-TEEEEECTTCEECEEEESEE------------TTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred cEEEEECC-CCEEEEeCCCCEEEEecccC------------CCCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence 99999976 45888988865554443211 01234579999999647799999975
Q ss_pred ----CCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCC---ceEEEeeCCCCCceEE
Q psy13635 197 ----TDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGG---ERVLLVKDRLGWPNGI 269 (357)
Q Consensus 197 ----~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~---~~~~~~~~~l~~P~gi 269 (357)
.++|.++++++.....+. ..+..|+||++++.++.||+++... .+|.++++++. ..+.+.. +..|.||
T Consensus 160 ~~~~~g~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyv~d~~~--~~I~~~~~~~~~~~~~~~~~~--~~gP~gi 234 (322)
T 2fp8_A 160 TSDKTGRLIKYDPSTKETTLLL-KELHVPGGAEVSADSSFVLVAEFLS--HQIVKYWLEGPKKGTAEVLVK--IPNPGNI 234 (322)
T ss_dssp HTCCCEEEEEEETTTTEEEEEE-EEESCCCEEEECTTSSEEEEEEGGG--TEEEEEESSSTTTTCEEEEEE--CSSEEEE
T ss_pred ccCCCceEEEEeCCCCEEEEec-cCCccCcceEECCCCCEEEEEeCCC--CeEEEEECCCCcCCccceEEe--CCCCCCe
Confidence 257999998866555443 3567899999999867899999984 59999999863 2333332 2229999
Q ss_pred EEecCCCEEEEEeCC----------CCeEEEEeCCCCCeEEEecCC---CCceEEEEEECCEEEEEeCCCCeEEEEeCc
Q psy13635 270 TLDVDNEKLYWCDAK----------TDKIEMIDFDGNNRRELINEN---LPHVFGISLLGDYVYWTDWQRRSIDRVNKI 335 (357)
Q Consensus 270 aid~~~~~lY~~d~~----------~~~I~~~~~dG~~~~~i~~~~---~~~p~gia~~~~~ly~td~~~~~I~~~~~~ 335 (357)
++| .+|+||+++.. .++|.+++.+|.....+.... +..|.+++..++.||+++..++.|.+++..
T Consensus 235 ~~d-~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 235 KRN-ADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp EEC-TTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC-
T ss_pred EEC-CCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEecc
Confidence 999 57789999976 578999999987666554332 567889988899999999999999999973
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.9e-20 Score=164.44 Aligned_cols=258 Identities=19% Similarity=0.218 Sum_probs=194.4
Q ss_pred CCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEE-eCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcC
Q psy13635 69 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI-TNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD 147 (357)
Q Consensus 69 ~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~-~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~ 147 (357)
....|.++++|+ ++.||+++..++.|.+++.++.. .... ......|.++++|+ .+.+|+++...+.|.+++.+
T Consensus 13 ~~~~~~~i~~d~-~g~l~v~~~~~~~v~~~d~~~~~----~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 13 QDTGPYGITVSD-KGKVWITQHKANMISCINLDGKI----TEYPLPTPDAKVMCLTISS-DGEVWFTENAANKIGRITKK 86 (299)
T ss_dssp SSCCEEEEEECT-TSCEEEEETTTTEEEEECTTCCE----EEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTT
T ss_pred cCCCccceEECC-CCCEEEEecCCCcEEEEcCCCCe----EEecCCcccCceeeEEECC-CCCEEEeCCCCCeEEEECCC
Confidence 456899999997 57899999888899999988431 2222 23457899999995 77899999888999999988
Q ss_pred CCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEe
Q psy13635 148 GKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLS 227 (357)
Q Consensus 148 g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd 227 (357)
|....... ......|.++++|+ +++||+++...+.|.+++++|.............|.++++|
T Consensus 87 g~~~~~~~----------------~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~ 149 (299)
T 2z2n_A 87 GIIKEYTL----------------PNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLG 149 (299)
T ss_dssp SCEEEEEC----------------SSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEEC
T ss_pred CcEEEEeC----------------CCcCCCceeeEECC-CCCEEEEecCCceEEEECCCCCEEEecCCCCCCCCceEEEc
Confidence 66433221 11234799999995 67999999888899999997766554444456789999999
Q ss_pred CCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCC
Q psy13635 228 PAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLP 307 (357)
Q Consensus 228 ~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~ 307 (357)
+. |+||+++... +.|.+++.+|.............|.++++| .+++||+++...+.|.+++.+|............
T Consensus 150 ~~-g~l~v~~~~~--~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~ 225 (299)
T 2z2n_A 150 SD-NALWFTENQN--NAIGRITESGDITEFKIPTPASGPVGITKG-NDDALWFVEIIGNKIGRITTSGEITEFKIPTPNA 225 (299)
T ss_dssp TT-SCEEEEETTT--TEEEEECTTCCEEEEECSSTTCCEEEEEEC-TTSSEEEEETTTTEEEEECTTCCEEEEECSSTTC
T ss_pred CC-CCEEEEeCCC--CEEEEEcCCCcEEEeeCCCCCCcceeEEEC-CCCCEEEEccCCceEEEECCCCcEEEEECCCCCC
Confidence 75 8999999764 599999996554433234456789999999 4688999999889999999966543322333567
Q ss_pred ceEEEEEE-CCEEEEEeCCCCeEEEEeCccCceeEEE-ecccCCceeee
Q psy13635 308 HVFGISLL-GDYVYWTDWQRRSIDRVNKITGNDREVI-IERSCTGVTRR 354 (357)
Q Consensus 308 ~p~gia~~-~~~ly~td~~~~~I~~~~~~~g~~~~~i-~~~l~~p~~i~ 354 (357)
.|.+|+++ +|.+|+++...+.|.++++ +|+..... ..+...|.++.
T Consensus 226 ~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~ 273 (299)
T 2z2n_A 226 RPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGIC 273 (299)
T ss_dssp CEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEE
T ss_pred CceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEE
Confidence 89999998 5899999988899999998 67654442 23455666654
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-19 Score=166.84 Aligned_cols=234 Identities=14% Similarity=0.080 Sum_probs=172.8
Q ss_pred cEEEEEcCCCCcceEe-ccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEE---------eCCcCCce
Q psy13635 51 DIRIANLSRPLKPVTI-IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI---------TNGLITPD 120 (357)
Q Consensus 51 ~i~~~~~~~~~~~~~~-~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~---------~~~~~~p~ 120 (357)
.|.++|...+.-.... ...+..|.++++++ ++.||++|..++.|++++.+|... ....+ ...+..|.
T Consensus 70 ~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~--~~~~~~~~~~~g~~~~~~~~P~ 146 (329)
T 3fvz_A 70 TILVIDPNNAEILQSSGKNLFYLPHGLSIDT-DGNYWVTDVALHQVFKLDPHSKEG--PLLILGRSMQPGSDQNHFCQPT 146 (329)
T ss_dssp CEEEECTTTCCEEEEECTTTCSSEEEEEECT-TSCEEEEETTTTEEEEECTTCSSC--CSEEESBTTBCCCSTTCCSSEE
T ss_pred cEEEEECCCCeEEeccCCCccCCceEEEECC-CCCEEEEECCCCEEEEEeCCCCeE--EEEEecccCCCCCCccccCCCc
Confidence 3888998642322222 23567899999997 556999999999999999988730 12222 24466899
Q ss_pred eEEEEcCCCeEEEEeC-CCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCe
Q psy13635 121 GLAIDWLTEKLYWTDS-ETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDR 199 (357)
Q Consensus 121 glavd~~~~~ly~td~-~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~ 199 (357)
+|++|+.+++||++|. .+++|.+++.+|.....+...+..... ....+..|.||++|+.+++||+++...++
T Consensus 147 ~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~-------~~~~~~~p~gia~d~~~g~l~v~d~~~~~ 219 (329)
T 3fvz_A 147 DVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSP-------RPGQFSVPHSLALVPHLDQLCVADRENGR 219 (329)
T ss_dssp EEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSC-------CTTEESCEEEEEEETTTTEEEEEETTTTE
T ss_pred EEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCC-------CCcccCCCcEEEEECCCCEEEEEECCCCE
Confidence 9999987899999996 799999999999877666433321100 02356789999999887999999999999
Q ss_pred EEEEEcC-CCceEEEecC-CCCCceEEEEeCCCCEEEEEeCCCC-----CCeEEEEecCCCceEEEe---eCCCCCceEE
Q psy13635 200 IEVCRLE-GTHRKVLVNT-DLVEPRAITLSPAHGYLFWSDWNEK-----RPKIERSLLNGGERVLLV---KDRLGWPNGI 269 (357)
Q Consensus 200 I~~~~~~-g~~~~~~~~~-~~~~P~giavd~~~g~Ly~~d~~~~-----~~~I~~~~~dg~~~~~~~---~~~l~~P~gi 269 (357)
|.+++++ |+....+... ....|.++++.| |.+|.++.... ..+|...+.........+ ...+..|.+|
T Consensus 220 I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~i 297 (329)
T 3fvz_A 220 IQCFKTDTKEFVREIKHASFGRNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDI 297 (329)
T ss_dssp EEEEETTTCCEEEEECCTTTTTCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEE
T ss_pred EEEEECCCCcEEEEEeccccCCCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEE
Confidence 9999998 8776666432 235688888887 66666653211 348888886655444444 2467889999
Q ss_pred EEecCCCEEEEEeCCCCeEEEEeCCCCC
Q psy13635 270 TLDVDNEKLYWCDAKTDKIEMIDFDGNN 297 (357)
Q Consensus 270 aid~~~~~lY~~d~~~~~I~~~~~dG~~ 297 (357)
++|+ +|.||++|..+++|++++++|..
T Consensus 298 a~~~-dG~lyvad~~~~~I~~~~~~~~~ 324 (329)
T 3fvz_A 298 VASE-DGTVYIGDAHTNTVWKFTLTEKM 324 (329)
T ss_dssp EECT-TSEEEEEESSSCCEEEEEEEECS
T ss_pred EECC-CCCEEEEECCCCEEEEEeCCccc
Confidence 9995 66999999999999999987743
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.88 E-value=6e-20 Score=176.26 Aligned_cols=247 Identities=12% Similarity=0.093 Sum_probs=178.8
Q ss_pred EEEeecCC-CCeEEEEEeC--CcEEEEEcCCCCcceEecc----CCCcEEEEEE-------EccCCEEEEEeCCCC----
Q psy13635 32 WYALSHHV-AAQMLLFATS--KDIRIANLSRPLKPVTIIK----DLEEGAAIDY-------YYKKSMVCWTDHGTE---- 93 (357)
Q Consensus 32 ~~~~~~~~-~~~~l~~~~~--~~i~~~~~~~~~~~~~~~~----~~~~~~~i~~-------d~~~~~ly~~d~~~~---- 93 (357)
..+++..+ .+..|+++.. +.|+++|+.+ .....+.. .+..|.+|++ +...+.||++|...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~-~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKN-RMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTT-TEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCC-CEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 34555554 3566777775 4699999976 33443332 3457999999 998888999999863
Q ss_pred --eEEEEEcCC--CCcc-eeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcC-------CCce----------
Q psy13635 94 --MISCCTFDG--NNVG-SKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD-------GKKR---------- 151 (357)
Q Consensus 94 --~I~~~~~~g--~~~~-~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~-------g~~~---------- 151 (357)
.|+.++.+. .-.. .....+. ....|.++++|+.++.||+++..+++|.+++++ +...
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 377775444 3200 0012333 467899999999899999999999999999987 3322
Q ss_pred --EEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCce-----EEEec---------
Q psy13635 152 --KVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHR-----KVLVN--------- 215 (357)
Q Consensus 152 --~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~-----~~~~~--------- 215 (357)
+.+... ....+|.+|++|+.++.||++|...++|+++++++... .++..
T Consensus 299 ~~~~l~~~---------------~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~D 363 (496)
T 3kya_A 299 TFKQLFTI---------------ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRD 363 (496)
T ss_dssp TEEEEEEC---------------SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBC
T ss_pred ccceeEec---------------CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccC
Confidence 122211 12247999999988888999999999999999887542 23322
Q ss_pred -----CCCCCce-EEEEeC------CCCEEEEEeCCCCCCeEEEEecCCCceEEEeeC----------------------
Q psy13635 216 -----TDLVEPR-AITLSP------AHGYLFWSDWNEKRPKIERSLLNGGERVLLVKD---------------------- 261 (357)
Q Consensus 216 -----~~~~~P~-giavd~------~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~---------------------- 261 (357)
..+..|. +++++. ..|.||++|+.. ++|.+++.+|. ..++...
T Consensus 364 G~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N--~rIr~i~~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~ 440 (496)
T 3kya_A 364 DVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLN--FCVRKVTPEGI-VSTYAGRGASTSLADGNQWGTDDGDLREV 440 (496)
T ss_dssp CBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGG--TEEEEECTTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTT
T ss_pred CcccccccCCCeEEEEEccccccccCCCeEEEEECCC--CEEEEEeCCCC-EEEEecccccccccCccccccCCCCchhh
Confidence 1367899 888873 468999999994 59999998884 3344321
Q ss_pred -CCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCe
Q psy13635 262 -RLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNR 298 (357)
Q Consensus 262 -~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~ 298 (357)
.|..|.||++|+.++.||++|..+++|+++++++...
T Consensus 441 a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 441 ARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp CCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred hhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence 2678999999965699999999999999999988643
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-19 Score=161.02 Aligned_cols=225 Identities=15% Similarity=0.237 Sum_probs=175.8
Q ss_pred CCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEE
Q psy13635 114 NGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWT 193 (357)
Q Consensus 114 ~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~t 193 (357)
..+..|.++++|+ .++||+++..+++|.+++.+|.....+...+.. ...+..|.+++++..+++||++
T Consensus 27 g~~~~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~-----------~~~~~~p~~i~~~~~~g~l~v~ 94 (286)
T 1q7f_A 27 GQFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKEGRFKFQFGECGKR-----------DSQLLYPNRVAVVRNSGDIIVT 94 (286)
T ss_dssp TCBSCEEEEEECT-TCCEEEEEGGGTEEEEECTTSCEEEEECCBSSS-----------TTCBSSEEEEEEETTTTEEEEE
T ss_pred CccCCCceEEECC-CCCEEEEECCCCEEEEECCCCcEEEEecccCCC-----------cccccCceEEEEEcCCCeEEEE
Confidence 3467899999996 578999999999999999998765544221110 2234579999997678999999
Q ss_pred eCC-CCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEee-CCCCCceEEEE
Q psy13635 194 DTG-TDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVK-DRLGWPNGITL 271 (357)
Q Consensus 194 d~~-~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~-~~l~~P~giai 271 (357)
+.. .++|.+.+.+|+....+.......|.+|++++. |+||+++... ++|.+.+.+|.....+.. ..+..|.+|++
T Consensus 95 ~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~--~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~ 171 (286)
T 1q7f_A 95 ERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNK-GRIIVVECKV--MRVIIFDQNGNVLHKFGCSKHLEFPNGVVV 171 (286)
T ss_dssp ECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTT-SCEEEEETTT--TEEEEECTTSCEEEEEECTTTCSSEEEEEE
T ss_pred cCCCCCEEEEECCCCcEEEEecCccCCCceEEEEeCC-CCEEEEECCC--CEEEEEcCCCCEEEEeCCCCccCCcEEEEE
Confidence 975 689999998888776665555678999999985 7899999874 599999998876555533 35678999999
Q ss_pred ecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecC-CCCceEEEEEE-CCEEEEEeCCCC-eEEEEeCccCceeEEEecccC
Q psy13635 272 DVDNEKLYWCDAKTDKIEMIDFDGNNRRELINE-NLPHVFGISLL-GDYVYWTDWQRR-SIDRVNKITGNDREVIIERSC 348 (357)
Q Consensus 272 d~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~-~~~~p~gia~~-~~~ly~td~~~~-~I~~~~~~~g~~~~~i~~~l~ 348 (357)
| .+++||+++...+.|.+++.+|.....+... .+..|.+|+++ +|.+|+++..++ +|.+++. +|+....+..+..
T Consensus 172 ~-~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~ 249 (286)
T 1q7f_A 172 N-DKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVK 249 (286)
T ss_dssp C-SSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSC
T ss_pred C-CCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCC
Confidence 9 4788999999999999999998766555432 35789999998 589999999886 9999997 7887777655433
Q ss_pred --Cceeeee
Q psy13635 349 --TGVTRRR 355 (357)
Q Consensus 349 --~p~~i~~ 355 (357)
.|.++..
T Consensus 250 ~~~~~~i~~ 258 (286)
T 1q7f_A 250 HAQCFDVAL 258 (286)
T ss_dssp CSCEEEEEE
T ss_pred CCcceeEEE
Confidence 3666643
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-18 Score=157.52 Aligned_cols=278 Identities=12% Similarity=0.071 Sum_probs=200.0
Q ss_pred CcEEEEEcCCCCcceEec------cCC-CcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeE
Q psy13635 50 KDIRIANLSRPLKPVTII------KDL-EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGL 122 (357)
Q Consensus 50 ~~i~~~~~~~~~~~~~~~------~~~-~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~gl 122 (357)
..|..+|.... +....+ ..+ ..|.++.++ ++++|++...++.|..++..... ....+ .....|.++
T Consensus 17 ~~l~~~d~~t~-~~~~~i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~---~~~~i-~~~~~p~~i 89 (328)
T 3dsm_A 17 ATLSYYDPATC-EVENEVFYRANGFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFK---EVGRI-TGFTSPRYI 89 (328)
T ss_dssp BEEEEEETTTT-EEECSHHHHHHSSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCC---EEEEE-ECCSSEEEE
T ss_pred ceEEEEECCCC-EEhhhhHhhhcCcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccE---EEEEc-CCCCCCcEE
Confidence 46888998652 222211 112 357888886 69999999988999999998664 12333 346789999
Q ss_pred EEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC-CCeEE
Q psy13635 123 AIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG-TDRIE 201 (357)
Q Consensus 123 avd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~-~~~I~ 201 (357)
++++ +++||+++...++|.++++........+..+.. ..+...|.+++++ +++||+++.+ .++|.
T Consensus 90 ~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~-----------~~~~~~p~~i~~~--~~~lyv~~~~~~~~v~ 155 (328)
T 3dsm_A 90 HFLS-DEKAYVTQIWDYRIFIINPKTYEITGYIECPDM-----------DMESGSTEQMVQY--GKYVYVNCWSYQNRIL 155 (328)
T ss_dssp EEEE-TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTC-----------CTTTCBCCCEEEE--TTEEEEEECTTCCEEE
T ss_pred EEeC-CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCc-----------cccCCCcceEEEE--CCEEEEEcCCCCCEEE
Confidence 9975 469999997789999999876554333322210 1223479999995 8899999985 78999
Q ss_pred EEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCC--------CCeEEEEecCCCceEEEeeC-CCCCceEEEEe
Q psy13635 202 VCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEK--------RPKIERSLLNGGERVLLVKD-RLGWPNGITLD 272 (357)
Q Consensus 202 ~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~--------~~~I~~~~~dg~~~~~~~~~-~l~~P~giaid 272 (357)
++++........+.. ...|.++++++. |++|++..+.. ...|.+++.+.......+.. ....|.+|+++
T Consensus 156 viD~~t~~~~~~i~~-g~~p~~i~~~~d-G~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~ 233 (328)
T 3dsm_A 156 KIDTETDKVVDELTI-GIQPTSLVMDKY-NKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLN 233 (328)
T ss_dssp EEETTTTEEEEEEEC-SSCBCCCEECTT-SEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEEC
T ss_pred EEECCCCeEEEEEEc-CCCccceEEcCC-CCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEe
Confidence 999885443333332 357999999974 89999987740 15899999876554433332 23589999999
Q ss_pred cCCCEEEEEeCCCCeEEEEeCCCCCeE--EEecCCCCceEEEEEE--CCEEEEEe----CCCCeEEEEeCccCceeEEEe
Q psy13635 273 VDNEKLYWCDAKTDKIEMIDFDGNNRR--ELINENLPHVFGISLL--GDYVYWTD----WQRRSIDRVNKITGNDREVII 344 (357)
Q Consensus 273 ~~~~~lY~~d~~~~~I~~~~~dG~~~~--~i~~~~~~~p~gia~~--~~~ly~td----~~~~~I~~~~~~~g~~~~~i~ 344 (357)
+.+++||+++. .|++++.+..... .++......|.||+++ +++||+++ +.+++|.+++.. |+....+.
T Consensus 234 ~d~~~lyv~~~---~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 234 GTRDTLYWINN---DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp TTSCEEEEESS---SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred cCCCEEEEEcc---EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence 88999999986 8999998654421 1222225689999997 68999999 788999999994 99888886
Q ss_pred cccCCceeeee
Q psy13635 345 ERSCTGVTRRR 355 (357)
Q Consensus 345 ~~l~~p~~i~~ 355 (357)
.+ ..|.++.+
T Consensus 310 ~G-~~P~~~~~ 319 (328)
T 3dsm_A 310 VG-IIPGAFCW 319 (328)
T ss_dssp EE-ESEEEEEE
T ss_pred ec-cCcceEEE
Confidence 54 57877765
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.86 E-value=6.4e-20 Score=163.16 Aligned_cols=239 Identities=22% Similarity=0.271 Sum_probs=175.6
Q ss_pred EEEEeecCCCCeEEEE-Ee--CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcce
Q psy13635 31 FWYALSHHVAAQMLLF-AT--SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGS 107 (357)
Q Consensus 31 ~~~~~~~~~~~~~l~~-~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~ 107 (357)
...+++.++... +++ ++ .+.|.+++..+..........+..|.++++++. +.||+++. ++.|++++.++..
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~-g~l~v~~~-~~~i~~~d~~~~~--- 98 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGA-GTVYVTDF-NNRVVTLAAGSNN--- 98 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTT-CCEEEEET-TTEEEEECTTCSC---
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCC-CCEEEEcC-CCEEEEEeCCCce---
Confidence 344555554433 666 53 457888987653222222345568999999984 56999998 7899999998874
Q ss_pred eEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCC
Q psy13635 108 KHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVA 187 (357)
Q Consensus 108 ~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~ 187 (357)
.......++..|.++++|+ .++||+++...++|.+++..+....... ...+..|.+|++|+ .
T Consensus 99 ~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~----------------~~~~~~p~~i~~~~-~ 160 (270)
T 1rwi_B 99 QTVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLP----------------FTGLNDPDGVAVDN-S 160 (270)
T ss_dssp CEECCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCEECC----------------CCSCCSCCCEEECT-T
T ss_pred EeeeecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCceeEeec----------------cccCCCceeEEEeC-C
Confidence 1223334567899999997 6779999998899999965443332211 22345799999996 5
Q ss_pred CeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCce
Q psy13635 188 RNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPN 267 (357)
Q Consensus 188 ~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~ 267 (357)
++||+++...++|.++++++..........+..|.+|++|+. |+||+++... ++|.+.+.++.........++..|.
T Consensus 161 g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~-g~l~v~~~~~--~~v~~~~~~~~~~~~~~~~~~~~p~ 237 (270)
T 1rwi_B 161 GNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEA-GTVYVTEHNT--NQVVKLLAGSTTSTVLPFTGLNTPL 237 (270)
T ss_dssp CCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTT-CCEEEEETTT--SCEEEECTTCSCCEECCCCSCSCEE
T ss_pred CCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCC-CCEEEEECCC--CcEEEEcCCCCcceeeccCCCCCce
Confidence 679999998889999999987665544445688999999975 7999999874 5999999998766554445567899
Q ss_pred EEEEecCCCEEEEEeCCCCeEEEEeCCCCC
Q psy13635 268 GITLDVDNEKLYWCDAKTDKIEMIDFDGNN 297 (357)
Q Consensus 268 giaid~~~~~lY~~d~~~~~I~~~~~dG~~ 297 (357)
++++|+ +++||+++...++|..++++...
T Consensus 238 ~i~~~~-~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 238 AVAVDS-DRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EEEECT-TCCEEEEEGGGTEEEEECCCGGG
T ss_pred eEEECC-CCCEEEEECCCCEEEEEcCCCcc
Confidence 999994 56899999999999999876543
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=7e-19 Score=160.51 Aligned_cols=226 Identities=12% Similarity=0.032 Sum_probs=164.8
Q ss_pred CcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCC--CEEEEEEcCC
Q psy13635 71 EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSET--NKLEVSSLDG 148 (357)
Q Consensus 71 ~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~--~~I~~~~~~g 148 (357)
..|.++++++ +++|||+|..+++|++++.+|.. ...... -..|.++++|+ .++||+++... .+|.+++...
T Consensus 32 ~~pegia~~~-~g~lyv~d~~~~~I~~~d~~g~~----~~~~~~-~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAP-DGTIFVTNHEVGEIVSITPDGNQ----QIHATV-EGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECT-TSCEEEEETTTTEEEEECTTCCE----EEEEEC-SSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECC-CCCEEEEeCCCCeEEEECCCCce----EEEEeC-CCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCC
Confidence 6799999998 57799999999999999998863 333332 35799999996 56799999654 4588887544
Q ss_pred CceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEE----------ecCCC
Q psy13635 149 KKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVL----------VNTDL 218 (357)
Q Consensus 149 ~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~----------~~~~~ 218 (357)
...+.+.... ....|+|++++ .++++|+++...++|++++.++...++. ....+
T Consensus 105 g~~~~~~~~~---------------~~~~~~g~~~~-~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~ 168 (306)
T 2p4o_A 105 GTVETLLTLP---------------DAIFLNGITPL-SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF 168 (306)
T ss_dssp SCEEEEEECT---------------TCSCEEEEEES-SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS
T ss_pred CeEEEEEeCC---------------CccccCccccc-CCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC
Confidence 3344333211 12357888875 6778999998888999999876422221 11346
Q ss_pred CCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCC----ceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCC
Q psy13635 219 VEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGG----ERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFD 294 (357)
Q Consensus 219 ~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~----~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~d 294 (357)
..|+|| ++.+++||+++... .+|.+++.++. ....+. .+..|.||++| .+|+||+++..+++|.+++.+
T Consensus 169 ~~pngi--s~dg~~lyv~d~~~--~~I~~~~~~~~g~~~~~~~~~--~~~~P~gi~vd-~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 169 PAANGL--KRFGNFLYVSNTEK--MLLLRIPVDSTDKPGEPEIFV--EQTNIDDFAFD-VEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp CSEEEE--EEETTEEEEEETTT--TEEEEEEBCTTSCBCCCEEEE--ESCCCSSEEEB-TTCCEEEECBTTCCEEEECTT
T ss_pred CcCCCc--CcCCCEEEEEeCCC--CEEEEEEeCCCCCCCccEEEe--ccCCCCCeEEC-CCCCEEEEeCCCCeEEEECCC
Confidence 689999 55568999999985 59999999852 123332 23689999999 578999999999999999998
Q ss_pred CCCeEEE-ecCCCCceEEEEEE-----CCEEEEEeCCC
Q psy13635 295 GNNRREL-INENLPHVFGISLL-----GDYVYWTDWQR 326 (357)
Q Consensus 295 G~~~~~i-~~~~~~~p~gia~~-----~~~ly~td~~~ 326 (357)
|...... +...+..|.++++. ++.||+++...
T Consensus 242 G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 242 RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 7643211 22346789999996 37999999753
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.3e-18 Score=155.74 Aligned_cols=245 Identities=16% Similarity=0.216 Sum_probs=181.9
Q ss_pred CcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCE
Q psy13635 61 LKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNK 140 (357)
Q Consensus 61 ~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~ 140 (357)
...+.+......+.+..+++.++.|||+|..++.|++++.+|. ..........|.++++|+ .++||+++...++
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~-----~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~~~ 108 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGT-----VDVLLDATAFTNGNAVDA-QQRLVHCEHGRRA 108 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSC-----EEEEEESCSCEEEEEECT-TSCEEEEETTTTE
T ss_pred CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCC-----EEEEeCCCCccceeeECC-CCCEEEEECCCCE
Confidence 5677778888899999999988899999999999999998665 333444456799999996 6779999998899
Q ss_pred EEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC-----------------CCeEEEE
Q psy13635 141 LEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG-----------------TDRIEVC 203 (357)
Q Consensus 141 I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~-----------------~~~I~~~ 203 (357)
|.+++.+|+... +.... ....++.|+++++|+ .|+||++|.. .+.|+++
T Consensus 109 v~~~~~~g~~~~-~~~~~------------~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~ 174 (305)
T 3dr2_A 109 ITRSDADGQAHL-LVGRY------------AGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRL 174 (305)
T ss_dssp EEEECTTSCEEE-EECEE------------TTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEE
T ss_pred EEEECCCCCEEE-EEecc------------CCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEE
Confidence 999999876433 32111 022346799999995 6789998741 2579999
Q ss_pred EcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCC---CCeEEEEecCCCc---eEEEeeCCCCCceEEEEecCCCE
Q psy13635 204 RLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEK---RPKIERSLLNGGE---RVLLVKDRLGWPNGITLDVDNEK 277 (357)
Q Consensus 204 ~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~---~~~I~~~~~dg~~---~~~~~~~~l~~P~giaid~~~~~ 277 (357)
++++.....+. .+..|+|++++|.+..||+++.... ..+|++.+.++.. ...+.......|.||++| .+|+
T Consensus 175 d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d-~~G~ 251 (305)
T 3dr2_A 175 PPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVD-RGGW 251 (305)
T ss_dssp CSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEEC-TTSC
T ss_pred cCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEEC-CCCC
Confidence 98543333333 5678999999998778999998630 1489999887643 223333345679999999 6778
Q ss_pred EEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEE--CCEEEEEeCCCCeEEEEeC
Q psy13635 278 LYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLL--GDYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 278 lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~--~~~ly~td~~~~~I~~~~~ 334 (357)
||++. .+.|.+++++|.....+.... .|.++++. ++.||++.. +.+++++.
T Consensus 252 lwv~~--~~gv~~~~~~g~~~~~~~~~~--~~~~~~f~~d~~~L~it~~--~~l~~~~~ 304 (305)
T 3dr2_A 252 LWSSS--GTGVCVFDSDGQLLGHIPTPG--TASNCTFDQAQQRLFITGG--PCLWMLPL 304 (305)
T ss_dssp EEECC--SSEEEEECTTSCEEEEEECSS--CCCEEEECTTSCEEEEEET--TEEEEEEC
T ss_pred EEEec--CCcEEEECCCCCEEEEEECCC--ceeEEEEeCCCCEEEEEcC--CeEEEEEC
Confidence 88887 457999999988766554322 58888884 568999874 57888764
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-17 Score=151.07 Aligned_cols=246 Identities=15% Similarity=0.159 Sum_probs=183.6
Q ss_pred CcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCE
Q psy13635 61 LKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNK 140 (357)
Q Consensus 61 ~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~ 140 (357)
...+.+......+.++++++.++.|||++...+.|++++.++. ..........|.++++|+ .++||+++...+.
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~ 91 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-----LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRR 91 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-----EEEEESSCSSEEEEEECT-TCCEEEEETTTTE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-----eEEEECCCCCcceeeECC-CCcEEEEecCCCe
Confidence 4566777788899999999988889999999999999999876 233334556799999996 6779999988899
Q ss_pred EEEEEc-CCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeC-----------------CCCeEEE
Q psy13635 141 LEVSSL-DGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDT-----------------GTDRIEV 202 (357)
Q Consensus 141 I~~~~~-~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~-----------------~~~~I~~ 202 (357)
|.+++. +|... .+.... ....+..|+++++|+ .|+||++|. ..+.|++
T Consensus 92 i~~~d~~~g~~~-~~~~~~------------~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~ 157 (296)
T 3e5z_A 92 LERQREPGGEWE-SIADSF------------EGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFR 157 (296)
T ss_dssp EEEECSTTCCEE-EEECEE------------TTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEE
T ss_pred EEEEcCCCCcEE-EEeecc------------CCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEE
Confidence 999998 55543 332111 012345799999996 678999875 1358999
Q ss_pred EEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecC--CCc---eEEEeeCCCCCceEEEEecCCCE
Q psy13635 203 CRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLN--GGE---RVLLVKDRLGWPNGITLDVDNEK 277 (357)
Q Consensus 203 ~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~d--g~~---~~~~~~~~l~~P~giaid~~~~~ 277 (357)
++.+|... .+ ...+..|++++++|.+..| |++... .+|++.+++ |.. ...+ ......|.+|++| .+|+
T Consensus 158 ~~~~g~~~-~~-~~~~~~~~gi~~s~dg~~l-v~~~~~--~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d-~~G~ 230 (296)
T 3e5z_A 158 LAPDGTLS-AP-IRDRVKPNGLAFLPSGNLL-VSDTGD--NATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVD-AGGL 230 (296)
T ss_dssp ECTTSCEE-EE-ECCCSSEEEEEECTTSCEE-EEETTT--TEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEB-TTSC
T ss_pred ECCCCCEE-Ee-ecCCCCCccEEECCCCCEE-EEeCCC--CeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEEC-CCCC
Confidence 99886543 33 3467889999999875566 999874 599999985 332 2333 4455679999999 5788
Q ss_pred EEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEE---CCEEEEEeCCCCeEEEEeCccCce
Q psy13635 278 LYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLL---GDYVYWTDWQRRSIDRVNKITGND 339 (357)
Q Consensus 278 lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~---~~~ly~td~~~~~I~~~~~~~g~~ 339 (357)
||++. .+.|.+++++|.....+.. ... |..+++. ++.||++.. +.+++++..+.+.
T Consensus 231 l~v~~--~~~v~~~~~~g~~~~~~~~-~~~-~~~~~f~~~d~~~L~v~t~--~~l~~~~~~~~~~ 289 (296)
T 3e5z_A 231 IWASA--GDGVHVLTPDGDELGRVLT-PQT-TSNLCFGGPEGRTLYMTVS--TEFWSIETNVRGL 289 (296)
T ss_dssp EEEEE--TTEEEEECTTSCEEEEEEC-SSC-CCEEEEESTTSCEEEEEET--TEEEEEECSCCBC
T ss_pred EEEEc--CCeEEEECCCCCEEEEEEC-CCC-ceeEEEECCCCCEEEEEcC--CeEEEEEcccccc
Confidence 99999 7899999999876655543 233 8888885 257999874 5899999855543
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.4e-18 Score=159.26 Aligned_cols=253 Identities=15% Similarity=0.118 Sum_probs=179.1
Q ss_pred cceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEE---EEeCCcCCceeEEEEcC---CCeEEEEe
Q psy13635 62 KPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHN---VITNGLITPDGLAIDWL---TEKLYWTD 135 (357)
Q Consensus 62 ~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~---~~~~~~~~p~glavd~~---~~~ly~td 135 (357)
+.+.+...+..|.+|++++ +++||+++.. ++|++++.+|.. ... +...+...|.|||+++. ++.||+++
T Consensus 20 ~~~~va~~l~~P~~ia~~p-dG~l~V~e~~-g~I~~~d~~G~~---~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~ 94 (354)
T 3a9g_A 20 KISEVASDLEVPWSIAPLG-GGRYLVTERP-GRLVLISPSGKK---LVASFDVANVGEAGLLGLALHPEFPKKSWVYLYA 94 (354)
T ss_dssp EEEEEECSCSCEEEEEEEE-TTEEEEEETT-TEEEEECSSCEE---EEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred EEEEEeCCCCCCeEEEEcC-CCeEEEEeCC-CEEEEEeCCCce---EeeccceeecCCCceeeEEeCCCCCcCCEEEEEE
Confidence 4445566788999999998 6789999987 899999755430 111 12345678999999986 79999998
Q ss_pred CC---C----CEEEEEEcCCCc-----eEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC-------
Q psy13635 136 SE---T----NKLEVSSLDGKK-----RKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG------- 196 (357)
Q Consensus 136 ~~---~----~~I~~~~~~g~~-----~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~------- 196 (357)
.. . ++|.+++.++.. .++++.. +|....+.|.+|++++ .|+||++...
T Consensus 95 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~------------~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~ 161 (354)
T 3a9g_A 95 SYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDG------------IPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLA 161 (354)
T ss_dssp EEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEE------------EECCSSCCCCCEEECT-TSCEEEECCCTTCGGGG
T ss_pred eccCCCCCcceEEEEEEECCCCcCcCccEEEEEc------------CCCCCCcCCceEEECC-CCcEEEEECCCCCCccc
Confidence 63 3 789999987751 2333221 0223456799999996 6689999642
Q ss_pred ------CCeEEEEEcCCC--------ceEEEecCCCCCceEEEEeCCCCEEEEEeCCCC-CCeEEEEecCCC--------
Q psy13635 197 ------TDRIEVCRLEGT--------HRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEK-RPKIERSLLNGG-------- 253 (357)
Q Consensus 197 ------~~~I~~~~~~g~--------~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~-~~~I~~~~~dg~-------- 253 (357)
.++|.+++++|+ ..++. ..++..|.||++|+.+|.||++|.+.. ...|.++...+.
T Consensus 162 ~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~-a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g 240 (354)
T 3a9g_A 162 QDLSSLAGKILRVDEEGRPPADNPFPNSPIW-SYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATG 240 (354)
T ss_dssp TCTTCCSSEEEEECTTSCCCTTSSSTTCCEE-EECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCS
T ss_pred cCCCCCCeEEEEEcCCCCCCCCCCCCCCcEE-EEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccC
Confidence 258999999997 33444 347889999999997899999998853 123555543220
Q ss_pred ------ceEEEee--CCCCCceEEEE-------ecCCCEEEEEeCCCCeEEEEeCCCCC----eEEEecCCCCceEEEEE
Q psy13635 254 ------ERVLLVK--DRLGWPNGITL-------DVDNEKLYWCDAKTDKIEMIDFDGNN----RRELINENLPHVFGISL 314 (357)
Q Consensus 254 ------~~~~~~~--~~l~~P~giai-------d~~~~~lY~~d~~~~~I~~~~~dG~~----~~~i~~~~~~~p~gia~ 314 (357)
....+.. .....|.|+++ + ..+.+|+++...++|.++++++.. ...++......|.++++
T Consensus 241 ~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~-~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~ 319 (354)
T 3a9g_A 241 KAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPG-LRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVI 319 (354)
T ss_dssp CCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGG-GTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEE
T ss_pred CCCCCCCcCCEeecCCCCcCCcceEEECCCCCcc-cCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEE
Confidence 0011111 22346999999 4 578999999999999999998643 23444444678999999
Q ss_pred E-CCEEEEEeCC-CC---------eEEEEeC
Q psy13635 315 L-GDYVYWTDWQ-RR---------SIDRVNK 334 (357)
Q Consensus 315 ~-~~~ly~td~~-~~---------~I~~~~~ 334 (357)
+ +|.||++++. .+ +|+|+.+
T Consensus 320 ~pDG~lyv~~~~~~G~g~~~~~~g~i~ri~~ 350 (354)
T 3a9g_A 320 DDDGGILISTSNRDGRGSLRAGDDKILKIVS 350 (354)
T ss_dssp CTTSCEEEEECTTSSSSCCCTTCSCEEEEEE
T ss_pred CCCCcEEEEEeCCCCCcCCCCCCCEEEEEec
Confidence 8 5899999974 44 8999876
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-18 Score=159.75 Aligned_cols=241 Identities=16% Similarity=0.160 Sum_probs=171.2
Q ss_pred cceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEE-----EeCCcCCceeEEEEcC---CCeEEE
Q psy13635 62 KPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV-----ITNGLITPDGLAIDWL---TEKLYW 133 (357)
Q Consensus 62 ~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~-----~~~~~~~p~glavd~~---~~~ly~ 133 (357)
+.+.+...+..|.+|++++ +++||+++.. +.|++++ +|.. ..+ ...+...|.|||+++. ++.||+
T Consensus 22 ~~~~va~~l~~P~~ia~~p-dG~l~V~e~~-g~I~~i~-~g~~----~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv 94 (352)
T 2ism_A 22 RVEEVVGGLEVPWALAFLP-DGGMLIAERP-GRIRLFR-EGRL----STYAELSVYHRGESGLLGLALHPRFPQEPYVYA 94 (352)
T ss_dssp CEEEEECCCSCEEEEEECT-TSCEEEEETT-TEEEEEE-TTEE----EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEE
T ss_pred EEEEEECCCCCceEEEEcC-CCeEEEEeCC-CeEEEEE-CCCc----cEeecceEeecCCCCceeEEECCCCCCCCEEEE
Confidence 4555667788999999998 4679999987 8999998 6542 222 2345678999999986 689999
Q ss_pred EeCCC-----CEEEEEEcCCCc---eEEEEecCCCCcceeeeeccC--cccccCCceEEEeCCCCeEEEEeCC-------
Q psy13635 134 TDSET-----NKLEVSSLDGKK---RKVLYWEDIDQPRAIASYKLP--TIEVEHPDGVAVDWVARNLYWTDTG------- 196 (357)
Q Consensus 134 td~~~-----~~I~~~~~~g~~---~~~~~~~~~~~p~~i~~~~~~--~~~~~~p~glavD~~~~~lY~td~~------- 196 (357)
++... ++|.+++.++.. .+.++. ++ | ....+.|.+|++++ .|+||+++..
T Consensus 95 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~-~~-----------p~~~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~ 161 (352)
T 2ism_A 95 YRTVAEGGLRNQVVRLRHLGERGVLDRVVLD-GI-----------PARPHGLHSGGRIAFGP-DGMLYVTTGEVYERELA 161 (352)
T ss_dssp EEEECTTSSEEEEEEEEECSSCEEEEEEEEE-EE-----------CCCTTCCCCCCCEEECT-TSCEEEECCCTTCGGGG
T ss_pred EEecCCCCCccEEEEEEeCCCCcCceEEEEE-eC-----------CCCCCCCcCCceEEECC-CCCEEEEECCCCCCccc
Confidence 99754 789999988642 223322 11 2 23456789999996 5699999742
Q ss_pred ------CCeEEEEEcCCC-------------ceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCC------CeEEEEecC
Q psy13635 197 ------TDRIEVCRLEGT-------------HRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKR------PKIERSLLN 251 (357)
Q Consensus 197 ------~~~I~~~~~~g~-------------~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~------~~I~~~~~d 251 (357)
.++|.+++++|+ ..++.. .++..|.|+++||.+|.||++|.+... ..|.++...
T Consensus 162 ~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a-~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G 240 (352)
T 2ism_A 162 QDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYS-LGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPG 240 (352)
T ss_dssp GCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEE-ECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTT
T ss_pred cCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEE-EcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccC
Confidence 258999999983 233333 467889999999978999999988541 136655543
Q ss_pred CC---------------ceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCC-------eEEEecCCCCce
Q psy13635 252 GG---------------ERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNN-------RRELINENLPHV 309 (357)
Q Consensus 252 g~---------------~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~-------~~~i~~~~~~~p 309 (357)
+. ............|.|+++ .++.+|+++...++|.++++++.. ...++ .....|
T Consensus 241 ~nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~--~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~-~~~~rp 317 (352)
T 2ism_A 241 GNYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAF--FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL-SGFGRL 317 (352)
T ss_dssp CBCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEE--ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE-ESSCCE
T ss_pred CcCCCCcccCCCCCCCCcCCeEecCCCCCCcceEE--ECCEEEEEECCCCEEEEEEECCCCcceeecchheec-ccCCCe
Confidence 20 000111122346899999 578999999999999999987543 23344 346789
Q ss_pred EEEEEE-CCEEEEEeCCC
Q psy13635 310 FGISLL-GDYVYWTDWQR 326 (357)
Q Consensus 310 ~gia~~-~~~ly~td~~~ 326 (357)
.+++++ +|.||++++..
T Consensus 318 ~~v~~~pdG~lyv~~~~~ 335 (352)
T 2ism_A 318 REVQVGPDGALYVTTSNR 335 (352)
T ss_dssp EEEEECTTSCEEEEECST
T ss_pred eEEEECCCCcEEEEEeCC
Confidence 999998 58999999764
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.3e-16 Score=144.00 Aligned_cols=266 Identities=11% Similarity=0.085 Sum_probs=193.5
Q ss_pred cEEEEEEEccCCEEEEEeCC------CCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEE
Q psy13635 72 EGAAIDYYYKKSMVCWTDHG------TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSS 145 (357)
Q Consensus 72 ~~~~i~~d~~~~~ly~~d~~------~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~ 145 (357)
.|.++++++.++.||+++.. ++.|+.++.++.. ....+.. -..|.++++++.++.+|+++...+.|.+++
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~---~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE---VTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC---EEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe---EEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 68899999999999999976 5689999988764 1222222 246999999998888999999899999999
Q ss_pred cCCCceEEEEecC-CCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeC-CCCeEEEEEcCCCceEEEecCCCCCceE
Q psy13635 146 LDGKKRKVLYWED-IDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDT-GTDRIEVCRLEGTHRKVLVNTDLVEPRA 223 (357)
Q Consensus 146 ~~g~~~~~~~~~~-~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~-~~~~I~~~~~~g~~~~~~~~~~~~~P~g 223 (357)
+........+..+ ...|.. .....|.++++++.++.+|+++. ..++|.+.++...............|.+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 189 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEE--------VRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTG 189 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSS--------CCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCC
T ss_pred CCCCeeEEEEecCCCccccc--------cCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccce
Confidence 8755443322221 000000 00123788999999999999985 4568999998866554444323456999
Q ss_pred EEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeC----CCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeE
Q psy13635 224 ITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKD----RLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRR 299 (357)
Q Consensus 224 iavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~----~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~ 299 (357)
++++|.+++||+++.. +.|...+............ ....|.++++++.++.||+++...+.|..++.......
T Consensus 190 ~~~s~dg~~l~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 266 (353)
T 3vgz_A 190 LALDSEGKRLYTTNAD---GELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNIL 266 (353)
T ss_dssp CEEETTTTEEEEECTT---SEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEE
T ss_pred EEECCCCCEEEEEcCC---CeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 9999998899999874 5899999876655444433 23457889999988999999998899999998654443
Q ss_pred EEecCCCCceEEEEEE--CCEEEEEeCCCCeEEEEeCccCceeEEEecccCCceeeee
Q psy13635 300 ELINENLPHVFGISLL--GDYVYWTDWQRRSIDRVNKITGNDREVIIERSCTGVTRRR 355 (357)
Q Consensus 300 ~i~~~~~~~p~gia~~--~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~i~~ 355 (357)
..+. ...|.++++. ++++|+++...+.|..++..+++....+..+ ..|.++..
T Consensus 267 ~~~~--~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~ 321 (353)
T 3vgz_A 267 AKVA--APESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLAL 321 (353)
T ss_dssp EEEE--CSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEE
T ss_pred EEEE--cCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEE
Confidence 3332 3456778886 4679999998999999999788877666543 35665543
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.81 E-value=7.3e-17 Score=146.31 Aligned_cols=232 Identities=13% Similarity=0.054 Sum_probs=171.5
Q ss_pred cCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcC
Q psy13635 68 KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD 147 (357)
Q Consensus 68 ~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~ 147 (357)
.....+.+..+++.++.|||+|...+.|++++.++.. ...... -..|.++++++ .++||++. .+.|.+++.+
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~----~~~~~~-~~~~~~i~~~~-dG~l~v~~--~~~l~~~d~~ 81 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ----VQRVTM-DAPVSSVALRQ-SGGYVATI--GTKFCALNWK 81 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCC----EEEEEC-SSCEEEEEEBT-TSSEEEEE--TTEEEEEETT
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCc----EEEEeC-CCceEEEEECC-CCCEEEEE--CCeEEEEECC
Confidence 4556788999999999999999999999999998764 333322 25799999996 55588876 5689999988
Q ss_pred CCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC-----------CCeEEEEEcCCCceEEEecC
Q psy13635 148 GKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG-----------TDRIEVCRLEGTHRKVLVNT 216 (357)
Q Consensus 148 g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~-----------~~~I~~~~~~g~~~~~~~~~ 216 (357)
+...+.+..... ......|+++++|+ .|++|+++.. .+.|++++.+|+..... .
T Consensus 82 ~g~~~~~~~~~~------------~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~--~ 146 (297)
T 3g4e_A 82 EQSAVVLATVDN------------DKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF--D 146 (297)
T ss_dssp TTEEEEEEECCT------------TCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE--E
T ss_pred CCcEEEEEecCC------------CCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEe--e
Confidence 665555543221 11234689999996 5679998742 34799999887654432 3
Q ss_pred CCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecC---CCc--eEEEee--CCCCCceEEEEecCCCEEEEEeCCCCeEE
Q psy13635 217 DLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLN---GGE--RVLLVK--DRLGWPNGITLDVDNEKLYWCDAKTDKIE 289 (357)
Q Consensus 217 ~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~d---g~~--~~~~~~--~~l~~P~giaid~~~~~lY~~d~~~~~I~ 289 (357)
.+..|+|++++|.+..|||++... ++|++.+.+ |.. .+.+.. .....|.|+++| .+|+||++....++|.
T Consensus 147 ~~~~pngi~~spdg~~lyv~~~~~--~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d-~~G~lwva~~~~~~v~ 223 (297)
T 3g4e_A 147 QVDISNGLDWSLDHKIFYYIDSLS--YSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCID-AEGKLWVACYNGGRVI 223 (297)
T ss_dssp EESBEEEEEECTTSCEEEEEEGGG--TEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEB-TTSCEEEEEETTTEEE
T ss_pred ccccccceEEcCCCCEEEEecCCC--CcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEEC-CCCCEEEEEcCCCEEE
Confidence 567899999999877899999884 599999874 321 223332 123579999999 5789999999889999
Q ss_pred EEeCC-CCCeEEEecCCCCceEEEEEEC---CEEEEEeCCC
Q psy13635 290 MIDFD-GNNRRELINENLPHVFGISLLG---DYVYWTDWQR 326 (357)
Q Consensus 290 ~~~~d-G~~~~~i~~~~~~~p~gia~~~---~~ly~td~~~ 326 (357)
+++++ |.....+. .....|.++++.+ +.||+|....
T Consensus 224 ~~d~~tG~~~~~i~-~p~~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 224 RLDPVTGKRLQTVK-LPVDKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp EECTTTCCEEEEEE-CSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred EEcCCCceEEEEEE-CCCCCceEEEEeCCCCCEEEEEcCCc
Confidence 99997 66555443 3446899999973 6899998653
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.7e-17 Score=150.55 Aligned_cols=240 Identities=13% Similarity=0.010 Sum_probs=174.8
Q ss_pred EEEEe--CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCc-----
Q psy13635 44 LLFAT--SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGL----- 116 (357)
Q Consensus 44 l~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~----- 116 (357)
+++++ .+.|.++|.... +....++....|.++++++. +++|+++..++.|.++++.+.. ....+..+.
T Consensus 56 lyv~~~~~~~v~viD~~t~-~~~~~i~~~~~p~~i~~~~~-g~lyv~~~~~~~v~~iD~~t~~---~~~~i~~g~~~~~~ 130 (328)
T 3dsm_A 56 GWIVVNNSHVIFAIDINTF-KEVGRITGFTSPRYIHFLSD-EKAYVTQIWDYRIFIINPKTYE---ITGYIECPDMDMES 130 (328)
T ss_dssp EEEEEGGGTEEEEEETTTC-CEEEEEECCSSEEEEEEEET-TEEEEEEBSCSEEEEEETTTTE---EEEEEECTTCCTTT
T ss_pred EEEEEcCCCEEEEEECccc-EEEEEcCCCCCCcEEEEeCC-CeEEEEECCCCeEEEEECCCCe---EEEEEEcCCccccC
Confidence 55555 357999999763 33333356789999999865 5999999778899999988763 122233222
Q ss_pred CCceeEEEEcCCCeEEEEeCC-CCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeC
Q psy13635 117 ITPDGLAIDWLTEKLYWTDSE-TNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDT 195 (357)
Q Consensus 117 ~~p~glavd~~~~~ly~td~~-~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~ 195 (357)
..|.+++++ +++||+++.+ .++|.++++........+..+ ..|.++++|+ .|++|++..
T Consensus 131 ~~p~~i~~~--~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-----------------~~p~~i~~~~-dG~l~v~~~ 190 (328)
T 3dsm_A 131 GSTEQMVQY--GKYVYVNCWSYQNRILKIDTETDKVVDELTIG-----------------IQPTSLVMDK-YNKMWTITD 190 (328)
T ss_dssp CBCCCEEEE--TTEEEEEECTTCCEEEEEETTTTEEEEEEECS-----------------SCBCCCEECT-TSEEEEEBC
T ss_pred CCcceEEEE--CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-----------------CCccceEEcC-CCCEEEEEC
Confidence 279999995 8999999984 889999998755433222211 3689999995 678999988
Q ss_pred CC----------CeEEEEEcCCCceE-EEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceE--EEeeCC
Q psy13635 196 GT----------DRIEVCRLEGTHRK-VLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERV--LLVKDR 262 (357)
Q Consensus 196 ~~----------~~I~~~~~~g~~~~-~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~--~~~~~~ 262 (357)
+. +.|.++++...... .+.......|.+++++|.+++||+++. .|++++.+..... .++...
T Consensus 191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-----~v~~~d~~t~~~~~~~~~~~~ 265 (328)
T 3dsm_A 191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-----DIWRMPVEADRVPVRPFLEFR 265 (328)
T ss_dssp CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-----SEEEEETTCSSCCSSCSBCCC
T ss_pred CCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-----EEEEEECCCCceeeeeeecCC
Confidence 75 78999998754433 332222358999999998899999864 6888888755432 112222
Q ss_pred CCCceEEEEecCCCEEEEEe----CCCCeEEEEeCCCCCeEEEecCCCCceEEEEEE
Q psy13635 263 LGWPNGITLDVDNEKLYWCD----AKTDKIEMIDFDGNNRRELINENLPHVFGISLL 315 (357)
Q Consensus 263 l~~P~giaid~~~~~lY~~d----~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~ 315 (357)
...|.|+++|+.+++||+++ ...++|.+++.+|+....+- -...|.++++-
T Consensus 266 ~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~--~G~~P~~~~~~ 320 (328)
T 3dsm_A 266 DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFY--VGIIPGAFCWK 320 (328)
T ss_dssp SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEEE--EEESEEEEEEE
T ss_pred CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEEE--eccCcceEEEe
Confidence 46899999998899999999 78899999999987666553 25578887764
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.8e-18 Score=155.89 Aligned_cols=225 Identities=16% Similarity=0.160 Sum_probs=161.4
Q ss_pred EeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCc----ce---eeeeccCcccccCCceEEEe
Q psy13635 112 ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQP----RA---IASYKLPTIEVEHPDGVAVD 184 (357)
Q Consensus 112 ~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p----~~---i~~~~~~~~~~~~p~glavD 184 (357)
+...+..|+++++|+ .+++||++..+++|.+++.++...+.+........ .+ ... ......|.||++|
T Consensus 14 ~~g~~~~p~~i~~d~-~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~p~gi~~~ 88 (322)
T 2fp8_A 14 IEAPSYAPNSFTFDS-TNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEK----RPLCGRTYDISYN 88 (322)
T ss_dssp EECSSSCCCCEECCT-TCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGG----HHHHCCEEEEEEE
T ss_pred cCCccCCceEEEEcC-CCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhc----cccCCCCceEEEc
Confidence 334578999999996 57888889889999999988765544432110000 00 000 0123579999999
Q ss_pred CCCCeEEEEeCCCCeEEEEEcCCCceEEEec----CCCCCceEEEEeCCCCEEEEEeCCC---------------CCCeE
Q psy13635 185 WVARNLYWTDTGTDRIEVCRLEGTHRKVLVN----TDLVEPRAITLSPAHGYLFWSDWNE---------------KRPKI 245 (357)
Q Consensus 185 ~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~----~~~~~P~giavd~~~g~Ly~~d~~~---------------~~~~I 245 (357)
+.+++||+++.. +.|.++++++...+.+.. ..+..|+++++|+.+|+||+++... ..++|
T Consensus 89 ~~~g~l~v~d~~-~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v 167 (322)
T 2fp8_A 89 LQNNQLYIVDCY-YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRL 167 (322)
T ss_dssp TTTTEEEEEETT-TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEE
T ss_pred CCCCcEEEEECC-CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceE
Confidence 767899999986 458999988655444432 1346799999997358999999752 12579
Q ss_pred EEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCC---CeEEEecCCCCceEEEEEE-CCEEEE
Q psy13635 246 ERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGN---NRRELINENLPHVFGISLL-GDYVYW 321 (357)
Q Consensus 246 ~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~---~~~~i~~~~~~~p~gia~~-~~~ly~ 321 (357)
++.+.++.....+. ..+..|+||++++.++.||++|...++|+++++++. ..+.+.. +..|.||+++ +|.||+
T Consensus 168 ~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~gP~gi~~d~~G~l~v 244 (322)
T 2fp8_A 168 IKYDPSTKETTLLL-KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPNPGNIKRNADGHFWV 244 (322)
T ss_dssp EEEETTTTEEEEEE-EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSSEEEEEECTTSCEEE
T ss_pred EEEeCCCCEEEEec-cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCCCCCeEECCCCCEEE
Confidence 99998766554443 456889999999777789999999999999999863 2333332 2239999999 588999
Q ss_pred EeCC----------CCeEEEEeCccCceeEEEecc
Q psy13635 322 TDWQ----------RRSIDRVNKITGNDREVIIER 346 (357)
Q Consensus 322 td~~----------~~~I~~~~~~~g~~~~~i~~~ 346 (357)
+++. .+.|.++++ +|+....+...
T Consensus 245 a~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~ 278 (322)
T 2fp8_A 245 SSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLP 278 (322)
T ss_dssp EEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECC
T ss_pred EecCcccccccCCCccEEEEECC-CCCEEEEEECC
Confidence 9976 578999998 68877776543
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-17 Score=150.01 Aligned_cols=223 Identities=13% Similarity=0.138 Sum_probs=168.1
Q ss_pred EEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCC
Q psy13635 109 HNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVAR 188 (357)
Q Consensus 109 ~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~ 188 (357)
+.++..+..-++|++.|+.++.|||+|...++|.++++++...+.+... ..|.++++|+. +
T Consensus 5 ~~~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~------------------~~~~~i~~~~d-G 65 (297)
T 3g4e_A 5 ECVLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMD------------------APVSSVALRQS-G 65 (297)
T ss_dssp EEEECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECS------------------SCEEEEEEBTT-S
T ss_pred EEEeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCC------------------CceEEEEECCC-C
Confidence 4556677888999999998999999999999999999987765443211 26889999964 5
Q ss_pred eEEEEeCCCCeEEEEEcCCCceEEEecC----CCCCceEEEEeCCCCEEEEEeCCC---------CCCeEEEEecCCCce
Q psy13635 189 NLYWTDTGTDRIEVCRLEGTHRKVLVNT----DLVEPRAITLSPAHGYLFWSDWNE---------KRPKIERSLLNGGER 255 (357)
Q Consensus 189 ~lY~td~~~~~I~~~~~~g~~~~~~~~~----~~~~P~giavd~~~g~Ly~~d~~~---------~~~~I~~~~~dg~~~ 255 (357)
+||++. .+.|.++++++...+.+... ....|+++++|+. |++|+++... ..+.|++++.+|...
T Consensus 66 ~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~d-G~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~ 142 (297)
T 3g4e_A 66 GYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPA-GRYFAGTMAEETAPAVLERHQGALYSLFPDHHVK 142 (297)
T ss_dssp SEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTT-SCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE
T ss_pred CEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCC-CCEEEecCCcccccccccCCCcEEEEEECCCCEE
Confidence 588876 36899999886655554432 2356899999985 8899987431 125899999887543
Q ss_pred EEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCC---CCC--eEEEec--CCCCceEEEEEE-CCEEEEEeCCCC
Q psy13635 256 VLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFD---GNN--RRELIN--ENLPHVFGISLL-GDYVYWTDWQRR 327 (357)
Q Consensus 256 ~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~d---G~~--~~~i~~--~~~~~p~gia~~-~~~ly~td~~~~ 327 (357)
. +...+..|+|+++++++..|||++...++|++++.+ |.- .+.+.. .....|.|++++ +|+||++++..+
T Consensus 143 ~--~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~ 220 (297)
T 3g4e_A 143 K--YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGG 220 (297)
T ss_dssp E--EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTT
T ss_pred E--EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCC
Confidence 3 234567899999998888899999999999999864 321 222322 123579999998 689999999999
Q ss_pred eEEEEeCccCceeEEEecccCCceeeee
Q psy13635 328 SIDRVNKITGNDREVIIERSCTGVTRRR 355 (357)
Q Consensus 328 ~I~~~~~~~g~~~~~i~~~l~~p~~i~~ 355 (357)
+|.++++.+|+....+..+...|..+.+
T Consensus 221 ~v~~~d~~tG~~~~~i~~p~~~~t~~~f 248 (297)
T 3g4e_A 221 RVIRLDPVTGKRLQTVKLPVDKTTSCCF 248 (297)
T ss_dssp EEEEECTTTCCEEEEEECSSSBEEEEEE
T ss_pred EEEEEcCCCceEEEEEECCCCCceEEEE
Confidence 9999999779988888766666665543
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=6.1e-18 Score=154.22 Aligned_cols=211 Identities=12% Similarity=0.054 Sum_probs=155.1
Q ss_pred CCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC
Q psy13635 117 ITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG 196 (357)
Q Consensus 117 ~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~ 196 (357)
..|+++++|+ +++|||+|..+++|++++.+|.....+. .+ ..|.||++|+ .++||+++..
T Consensus 32 ~~pegia~~~-~g~lyv~d~~~~~I~~~d~~g~~~~~~~-~~-----------------~~p~gia~~~-dG~l~vad~~ 91 (306)
T 2p4o_A 32 TFLENLASAP-DGTIFVTNHEVGEIVSITPDGNQQIHAT-VE-----------------GKVSGLAFTS-NGDLVATGWN 91 (306)
T ss_dssp CCEEEEEECT-TSCEEEEETTTTEEEEECTTCCEEEEEE-CS-----------------SEEEEEEECT-TSCEEEEEEC
T ss_pred CCcceEEECC-CCCEEEEeCCCCeEEEECCCCceEEEEe-CC-----------------CCceeEEEcC-CCcEEEEecc
Confidence 6799999997 6789999999999999999986544332 11 2699999995 4679999976
Q ss_pred CC--eEEEEEcCCCceEEEec-CCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEE----------eeCCC
Q psy13635 197 TD--RIEVCRLEGTHRKVLVN-TDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLL----------VKDRL 263 (357)
Q Consensus 197 ~~--~I~~~~~~g~~~~~~~~-~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~----------~~~~l 263 (357)
.+ +|.+++......+.+.. .....|.|+++.+ .+.+|++|... ++|++++.++...... ....+
T Consensus 92 ~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~--g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~ 168 (306)
T 2p4o_A 92 ADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYR--GAIWLIDVVQPSGSIWLEHPMLARSNSESVF 168 (306)
T ss_dssp TTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTT--TEEEEEETTTTEEEEEEECGGGSCSSTTCCS
T ss_pred CCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCC--CeEEEEeCCCCcEeEEEECCccccccccCCC
Confidence 44 58888754333333332 3456789999875 58999999863 6999999876432221 11346
Q ss_pred CCceEEEEecCCCEEEEEeCCCCeEEEEeCCCC----CeEEEecCCCCceEEEEEE-CCEEEEEeCCCCeEEEEeCccCc
Q psy13635 264 GWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGN----NRRELINENLPHVFGISLL-GDYVYWTDWQRRSIDRVNKITGN 338 (357)
Q Consensus 264 ~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~----~~~~i~~~~~~~p~gia~~-~~~ly~td~~~~~I~~~~~~~g~ 338 (357)
..|+|| ++.+++||++|..+++|++++.++. ..+.+. .+..|.||+++ +|++|++++.+++|.++++ +|+
T Consensus 169 ~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~--~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~-~G~ 243 (306)
T 2p4o_A 169 PAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV--EQTNIDDFAFDVEGNLYGATHIYNSVVRIAP-DRS 243 (306)
T ss_dssp CSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE--ESCCCSSEEEBTTCCEEEECBTTCCEEEECT-TCC
T ss_pred CcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe--ccCCCCCeEECCCCCEEEEeCCCCeEEEECC-CCC
Confidence 789999 4567899999999999999998752 122222 24689999999 6899999999999999998 577
Q ss_pred eeEE--EecccCCceeeee
Q psy13635 339 DREV--IIERSCTGVTRRR 355 (357)
Q Consensus 339 ~~~~--i~~~l~~p~~i~~ 355 (357)
...+ +..++..|..+..
T Consensus 244 ~~~~~~~~~~~~~p~~~a~ 262 (306)
T 2p4o_A 244 TTIIAQAEQGVIGSTAVAF 262 (306)
T ss_dssp EEEEECGGGTCTTEEEEEE
T ss_pred EEEEeecccccCCceEEEE
Confidence 6443 3345567777654
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.79 E-value=8.4e-17 Score=145.96 Aligned_cols=248 Identities=15% Similarity=0.157 Sum_probs=178.3
Q ss_pred cceEeccCCCcEEEEEEEccCCEEEEE-------eCCCCeEEEEEcCCCCcceeEEEEeC-----CcCCceeEEEEcCCC
Q psy13635 62 KPVTIIKDLEEGAAIDYYYKKSMVCWT-------DHGTEMISCCTFDGNNVGSKHNVITN-----GLITPDGLAIDWLTE 129 (357)
Q Consensus 62 ~~~~~~~~~~~~~~i~~d~~~~~ly~~-------d~~~~~I~~~~~~g~~~~~~~~~~~~-----~~~~p~glavd~~~~ 129 (357)
....+...+..|.+++++ .++.||++ +...+.|++++..+.. ...+.. ....|.++++|+.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~----~~~~~~~~~~~~~~~~~~i~~~~~~g 83 (314)
T 1pjx_A 9 LFTKVTEDIPGAEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGK----KTVICKPEVNGYGGIPAGCQCDRDAN 83 (314)
T ss_dssp CCEEEECCCTTCEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCC----EEEEECCEETTEECCEEEEEECSSSS
T ss_pred hHhhhhccCCCccCceEC-CCCCEEEEEeccccCCCCCCEEEEEeCCCCc----EEEEEecccCCCCCCCceEEEecCCC
Confidence 345557778899999999 47789999 7777899999976553 222222 235799999997548
Q ss_pred eEEEEeCCCCEEEEEEcCCCceEEE-EecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCC-----------
Q psy13635 130 KLYWTDSETNKLEVSSLDGKKRKVL-YWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGT----------- 197 (357)
Q Consensus 130 ~ly~td~~~~~I~~~~~~g~~~~~~-~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~----------- 197 (357)
+||+++... .|.+++.+|.. ..+ .... . ......|.++++|+ .+++|+++...
T Consensus 84 ~l~v~~~~~-~l~~~d~~g~~-~~~~~~~~-~-----------~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~ 148 (314)
T 1pjx_A 84 QLFVADMRL-GLLVVQTDGTF-EEIAKKDS-E-----------GRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSM 148 (314)
T ss_dssp EEEEEETTT-EEEEEETTSCE-EECCSBCT-T-----------SCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTT
T ss_pred cEEEEECCC-CEEEEeCCCCE-EEEEeccC-C-----------CccccCCcCEEECC-CCCEEEEecCcccccccccccc
Confidence 999998744 89999988543 222 1110 0 11234799999996 57899998765
Q ss_pred ----CeEEEEEcCCCceEEEecCCCCCceEEEEe----CCCCEEEEEeCCCCCCeEEEEecCCCce----EEEee--CCC
Q psy13635 198 ----DRIEVCRLEGTHRKVLVNTDLVEPRAITLS----PAHGYLFWSDWNEKRPKIERSLLNGGER----VLLVK--DRL 263 (357)
Q Consensus 198 ----~~I~~~~~~g~~~~~~~~~~~~~P~giavd----~~~g~Ly~~d~~~~~~~I~~~~~dg~~~----~~~~~--~~l 263 (357)
+.|.+++++|+.... . .....|.+++++ +.++.||+++... ++|.+.+.++... ..+.. ...
T Consensus 149 ~~~~~~l~~~~~~g~~~~~-~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~--~~i~~~~~~~~g~~~~~~~~~~~~~~~ 224 (314)
T 1pjx_A 149 QEKFGSIYCFTTDGQMIQV-D-TAFQFPNGIAVRHMNDGRPYQLIVAETPT--KKLWSYDIKGPAKIENKKVWGHIPGTH 224 (314)
T ss_dssp SSSCEEEEEECTTSCEEEE-E-EEESSEEEEEEEECTTSCEEEEEEEETTT--TEEEEEEEEETTEEEEEEEEEECCCCS
T ss_pred cCCCCeEEEECCCCCEEEe-c-cCCCCcceEEEecccCCCCCEEEEEECCC--CeEEEEECCCCCccccceEEEECCCCC
Confidence 589999988654332 2 245679999999 8755899999874 5999998762211 12221 122
Q ss_pred -CCceEEEEecCCCEEEEEeCCCCeEEEEeCC-CCCeEEEecCCCCceEEEEEE-CC-EEEEEeCCCCeEEEEeCc
Q psy13635 264 -GWPNGITLDVDNEKLYWCDAKTDKIEMIDFD-GNNRRELINENLPHVFGISLL-GD-YVYWTDWQRRSIDRVNKI 335 (357)
Q Consensus 264 -~~P~giaid~~~~~lY~~d~~~~~I~~~~~d-G~~~~~i~~~~~~~p~gia~~-~~-~ly~td~~~~~I~~~~~~ 335 (357)
..|.++++| .+++||+++...+.|.+++++ |.....+. .....|.+++++ ++ .||+++...+.|++++..
T Consensus 225 ~~~p~~i~~d-~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 225 EGGADGMDFD-EDNNLLVANWGSSHIEVFGPDGGQPKMRIR-CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp SCEEEEEEEB-TTCCEEEEEETTTEEEEECTTCBSCSEEEE-CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CCCCCceEEC-CCCCEEEEEcCCCEEEEEcCCCCcEeEEEe-CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 579999999 578999999888999999998 66554443 234689999996 34 599999888999999874
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.7e-15 Score=136.21 Aligned_cols=263 Identities=13% Similarity=0.072 Sum_probs=189.8
Q ss_pred cCCCCeEEEEEe--------CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCccee
Q psy13635 37 HHVAAQMLLFAT--------SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSK 108 (357)
Q Consensus 37 ~~~~~~~l~~~~--------~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~ 108 (357)
.++....+++++ ...|..+|+.+. +.....+....|.++++++.++.+|+++..++.|..++..+.. .
T Consensus 48 ~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~---~ 123 (353)
T 3vgz_A 48 YSQQENALWLATSQSRKLDKGGVVYRLDPVTL-EVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGE---V 123 (353)
T ss_dssp EETTTTEEEEEECCCTTTEESEEEEEECTTTC-CEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCC---E
T ss_pred ECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC-eEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCe---e
Confidence 344445677777 346889998763 3333334445688999999888999999998999999998664 1
Q ss_pred EEEEeCC-cC--------CceeEEEEcCCCeEEEEe-CCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCC
Q psy13635 109 HNVITNG-LI--------TPDGLAIDWLTEKLYWTD-SETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHP 178 (357)
Q Consensus 109 ~~~~~~~-~~--------~p~glavd~~~~~ly~td-~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p 178 (357)
...+..+ .. .|.++++++.++.+|+++ ...++|.++++........... ....|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~----------------~~~~~ 187 (353)
T 3vgz_A 124 KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN----------------TGKMS 187 (353)
T ss_dssp EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC----------------CCTTC
T ss_pred EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC----------------CCCcc
Confidence 2223221 11 278999999889999998 4578899999876554333320 11358
Q ss_pred ceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecC----CCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCc
Q psy13635 179 DGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNT----DLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGE 254 (357)
Q Consensus 179 ~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~----~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~ 254 (357)
.++++++.++.||+++. .+.|.+.++........... ....|.+++++|.++.||+++... +.|...+.....
T Consensus 188 ~~~~~s~dg~~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~--~~v~~~d~~~~~ 264 (353)
T 3vgz_A 188 TGLALDSEGKRLYTTNA-DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKA--AEVLVVDTRNGN 264 (353)
T ss_dssp CCCEEETTTTEEEEECT-TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSS--SEEEEEETTTCC
T ss_pred ceEEECCCCCEEEEEcC-CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCC--CEEEEEECCCCc
Confidence 99999998999999887 57899999875544333222 234678899999988999999874 599999987655
Q ss_pred eEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEE--CCEEEEEeCC
Q psy13635 255 RVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLL--GDYVYWTDWQ 325 (357)
Q Consensus 255 ~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~--~~~ly~td~~ 325 (357)
....+. ...|.++++++.++++|+++...+.|..++.+.......+. ....|.++++. +..+|++...
T Consensus 265 ~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 265 ILAKVA--APESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD-TPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEEEEE--CSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE-CCSEEEEEEECTTSCEEEEEEEC
T ss_pred EEEEEE--cCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe-cCCCCCeEEEcCCCCEEEEEEcc
Confidence 544443 34578899998888899999989999999986544433333 34588999986 4569998755
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.4e-17 Score=150.35 Aligned_cols=235 Identities=16% Similarity=0.155 Sum_probs=165.9
Q ss_pred CcEEEEEEEccCCEEEEEeCC--CC--eEEEEEcCCCCcceeEE------EEeCCcCCceeEEEEcCCCeEEEEeCC---
Q psy13635 71 EEGAAIDYYYKKSMVCWTDHG--TE--MISCCTFDGNNVGSKHN------VITNGLITPDGLAIDWLTEKLYWTDSE--- 137 (357)
Q Consensus 71 ~~~~~i~~d~~~~~ly~~d~~--~~--~I~~~~~~g~~~~~~~~------~~~~~~~~p~glavd~~~~~ly~td~~--- 137 (357)
..|.+|++++ ++++|++... .+ +|..++ +|.. .. .....+..|.++++|+ .++|||+|.+
T Consensus 17 ~~p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~-~g~~----~~~p~~~~~~~~~~~~p~gv~~d~-~g~L~v~D~g~~~ 89 (343)
T 2qe8_A 17 LAPGNITLTP-DGRLFLSLHQFYQPEMQVAELT-QDGL----IPFPPQSGNAIITFDTVLGIKSDG-NGIVWMLDNGNQS 89 (343)
T ss_dssp SCEEEEEECT-TSCEEEEECGGGCCSCSEEEEE-TTEE----EESCCCCSSCCCCCSCEEEEEECS-SSEEEEEECHHHH
T ss_pred CCcceEEECC-CCCEEEEeCCCCCCceEEEEEC-CCCe----ecCCCcccCcccceeEeeEEEEcC-CCcEEEEcCCCCc
Confidence 5899999987 5789999642 23 788887 4431 10 0123467899999996 5889999987
Q ss_pred --CCEEEEEEcCCCc-eEEEEec-CCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeC---CCCeEEEEEcCCCce
Q psy13635 138 --TNKLEVSSLDGKK-RKVLYWE-DIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDT---GTDRIEVCRLEGTHR 210 (357)
Q Consensus 138 --~~~I~~~~~~g~~-~~~~~~~-~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~---~~~~I~~~~~~g~~~ 210 (357)
..+|.++++.... .+.+... .. ......|+++++|+.++.+|++|. ..+.|.+++++....
T Consensus 90 ~~~~~i~~~d~~tg~~~~~~~~~~~~------------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~ 157 (343)
T 2qe8_A 90 KSVPKLVAWDTLNNQLSRVIYLPPPI------------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA 157 (343)
T ss_dssp TSCCEEEEEETTTTEEEEEEECCTTT------------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE
T ss_pred CCCCeEEEEECCCCeEEEEEECChhh------------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE
Confidence 5899999987443 3433211 11 111246899999988899999999 778999999874332
Q ss_pred EEEecC-----------------------------CCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecC----CC--c-
Q psy13635 211 KVLVNT-----------------------------DLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLN----GG--E- 254 (357)
Q Consensus 211 ~~~~~~-----------------------------~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~d----g~--~- 254 (357)
..+... -...|+||+++|.+..||+++... .++++++.+ +. .
T Consensus 158 ~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~--~~l~~~~~~~~~~~~~~~~ 235 (343)
T 2qe8_A 158 ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHS--TSMYRIKSADLSNLQLTDA 235 (343)
T ss_dssp EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSC--SEEEEEEHHHHTCTTCCHH
T ss_pred EEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCC--CeEEEEEHHHhcCCCCChh
Confidence 222211 013589999999877999999884 499999853 11 0
Q ss_pred -----eEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeC-CCCCeEEEecC-CCCceEEEEEE-CCEEEEEeCCC
Q psy13635 255 -----RVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDF-DGNNRRELINE-NLPHVFGISLL-GDYVYWTDWQR 326 (357)
Q Consensus 255 -----~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~-dG~~~~~i~~~-~~~~p~gia~~-~~~ly~td~~~ 326 (357)
.... .....|.|+++| .+|+||+++...++|.+++. +|+. ..+... .+..|.+++++ ++.||+++...
T Consensus 236 ~~~~~~~~~--g~~g~pdgia~d-~~G~l~va~~~~~~V~~~d~~~G~~-~~~~~~~~~~~p~~va~~~~g~l~v~~~~~ 311 (343)
T 2qe8_A 236 ELGSKIERY--SEKPICDGISID-KDHNIYVGDLAHSAIGVITSADRAY-KLLVTDEKLSWTDSFNFGSDGYLYFDCNQL 311 (343)
T ss_dssp HHHTTCEEE--EECCSCSCEEEC-TTCCEEEEEGGGTEEEEEETTTTEE-EEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred hhhcceEec--ccCCCCceEEEC-CCCCEEEEccCCCeEEEEECCCCCE-EEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence 0111 123479999999 57899999999999999999 7753 334332 37789999997 58899999766
Q ss_pred CeEE
Q psy13635 327 RSID 330 (357)
Q Consensus 327 ~~I~ 330 (357)
+++.
T Consensus 312 ~~~~ 315 (343)
T 2qe8_A 312 HHSA 315 (343)
T ss_dssp GGSG
T ss_pred cccc
Confidence 5543
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.7e-17 Score=150.00 Aligned_cols=231 Identities=14% Similarity=0.094 Sum_probs=161.8
Q ss_pred EEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCC--
Q psy13635 109 HNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWV-- 186 (357)
Q Consensus 109 ~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~-- 186 (357)
.+++..++..|.+|++++ .+.||+++.. ++|.+++ +|.. +.+..... .......|.||++++.
T Consensus 23 ~~~va~~l~~P~~ia~~p-dG~l~V~e~~-g~I~~i~-~g~~-~~~~~~~v-----------~~~g~~~p~gia~~pdf~ 87 (352)
T 2ism_A 23 VEEVVGGLEVPWALAFLP-DGGMLIAERP-GRIRLFR-EGRL-STYAELSV-----------YHRGESGLLGLALHPRFP 87 (352)
T ss_dssp EEEEECCCSCEEEEEECT-TSCEEEEETT-TEEEEEE-TTEE-EEEEECCC-----------CCSTTCSEEEEEECTTTT
T ss_pred EEEEECCCCCceEEEEcC-CCeEEEEeCC-CeEEEEE-CCCc-cEeecceE-----------eecCCCCceeEEECCCCC
Confidence 667788899999999997 5679999986 8999999 6653 22221110 0234568999999987
Q ss_pred -CCeEEEEeCCC-----CeEEEEEcCCC---ceEEEec------CCCCCceEEEEeCCCCEEEEEeCCC-----------
Q psy13635 187 -ARNLYWTDTGT-----DRIEVCRLEGT---HRKVLVN------TDLVEPRAITLSPAHGYLFWSDWNE----------- 240 (357)
Q Consensus 187 -~~~lY~td~~~-----~~I~~~~~~g~---~~~~~~~------~~~~~P~giavd~~~g~Ly~~d~~~----------- 240 (357)
++.||+++... ++|.+++.++. ..++++. .....|.+|+++|. |+||+++...
T Consensus 88 ~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pd-G~Lyv~~G~~~~~~~~~d~~~ 166 (352)
T 2ism_A 88 QEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPD-GMLYVTTGEVYERELAQDLAS 166 (352)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTT-SCEEEECCCTTCGGGGGCTTC
T ss_pred CCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCC-CCEEEEECCCCCCccccCCCC
Confidence 78999998754 68999998864 2233322 23457899999985 8999997431
Q ss_pred CCCeEEEEecCCC------------ceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCe--------EEEEeCCCC----
Q psy13635 241 KRPKIERSLLNGG------------ERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDK--------IEMIDFDGN---- 296 (357)
Q Consensus 241 ~~~~I~~~~~dg~------------~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~--------I~~~~~dG~---- 296 (357)
..++|.|++.+|+ ...+++..++.+|.|+++|+.+++||++|.+.+. |..+...+.
T Consensus 167 ~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp 246 (352)
T 2ism_A 167 LGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWP 246 (352)
T ss_dssp SSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTT
T ss_pred CceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCC
Confidence 1369999999983 1233455678899999999778999999987766 666654331
Q ss_pred -----------CeEEEecCCCCceEEEEEECCEEEEEeCCCCeEEEEeCccCce------eEEEecccCCceeeee
Q psy13635 297 -----------NRRELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGND------REVIIERSCTGVTRRR 355 (357)
Q Consensus 297 -----------~~~~i~~~~~~~p~gia~~~~~ly~td~~~~~I~~~~~~~g~~------~~~i~~~l~~p~~i~~ 355 (357)
............|.|+++.+|.+|++++..++|.+++...++. .+.+......|.++..
T Consensus 247 ~~~g~~~~~~~~~p~~~~~~~~ap~G~~~~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~ 322 (352)
T 2ism_A 247 RVVGRGNDPRYRDPLYFWPQGFPPGNLAFFRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQV 322 (352)
T ss_dssp TCCSCCCCTTSCCCSEECTTCCCEEEEEEETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEE
T ss_pred cccCCCCCCCCcCCeEecCCCCCCcceEEECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEE
Confidence 0000111223468999999999999999999999998743331 2334455567777753
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-16 Score=148.03 Aligned_cols=258 Identities=11% Similarity=0.149 Sum_probs=175.2
Q ss_pred CcceEeccCCCcEEEEEEEccCCE-EEEEeCCCCeEEEEEcCCCCcc--e-eEEEEeCCcCCceeEEEEcC---CCeEEE
Q psy13635 61 LKPVTIIKDLEEGAAIDYYYKKSM-VCWTDHGTEMISCCTFDGNNVG--S-KHNVITNGLITPDGLAIDWL---TEKLYW 133 (357)
Q Consensus 61 ~~~~~~~~~~~~~~~i~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~--~-~~~~~~~~~~~p~glavd~~---~~~ly~ 133 (357)
-+.+.+...+..|++|++++. ++ ||+++.. ++|++++.+|.... . ...+...+...|.|||+++. ++.||+
T Consensus 8 ~~~~~va~~l~~P~~i~~~pd-G~~l~V~e~~-G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv 85 (353)
T 2g8s_A 8 VNVEVLQDKLDHPWALAFLPD-NHGMLITLRG-GELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWL 85 (353)
T ss_dssp SEEEEEEEEESSEEEEEECST-TCCEEEEETT-TEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEE
T ss_pred cEEEEEECCCCCcEEEEEcCC-CCEEEEEeCC-ceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEE
Confidence 345556667889999999984 56 9999975 79999987764200 0 00122334557899999986 899999
Q ss_pred EeCC-------CCEEEEEEcCCC-----ceEEEEecCCCCcceeeeeccCc--ccccCCceEEEeCCCCeEEEEeCC---
Q psy13635 134 TDSE-------TNKLEVSSLDGK-----KRKVLYWEDIDQPRAIASYKLPT--IEVEHPDGVAVDWVARNLYWTDTG--- 196 (357)
Q Consensus 134 td~~-------~~~I~~~~~~g~-----~~~~~~~~~~~~p~~i~~~~~~~--~~~~~p~glavD~~~~~lY~td~~--- 196 (357)
++.. ..+|.++++++. ..++++.. + |. ...+.|.+|++++ .|+||++...
T Consensus 86 ~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~-~-----------p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~ 152 (353)
T 2g8s_A 86 SYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQ-M-----------PKLSTGNHFGGRLVFDG-KGYLFIALGENNQ 152 (353)
T ss_dssp EEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEEC-S-----------SCCBSSSCCCCCEEECS-SSEEEEEECCTTC
T ss_pred EEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEE-C-----------CCCCCCcccCccEEECC-CCcEEEEECCCCC
Confidence 9864 458999888653 22333321 1 11 2446789999996 6699999643
Q ss_pred ----------CCeEEEEEcCCC-------------ceEEEecCCCCCceEEEEeCCCCEEEEEeCCCC-CCeEEEEecCC
Q psy13635 197 ----------TDRIEVCRLEGT-------------HRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEK-RPKIERSLLNG 252 (357)
Q Consensus 197 ----------~~~I~~~~~~g~-------------~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~-~~~I~~~~~dg 252 (357)
.++|.+++++|+ ..++. ..++..|.|+++|+.+|.||++|.+.. ...|.++...+
T Consensus 153 ~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~-a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~ 231 (353)
T 2g8s_A 153 RPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIW-SYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGK 231 (353)
T ss_dssp GGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEE-EECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTC
T ss_pred CCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEE-EEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCC
Confidence 358999999987 23333 347789999999997899999998742 01333332211
Q ss_pred C----------------------------ceEEEeeCCCCCceEEEEec------CCCEEEEEeCCCCeEEEEeCCCCCe
Q psy13635 253 G----------------------------ERVLLVKDRLGWPNGITLDV------DNEKLYWCDAKTDKIEMIDFDGNNR 298 (357)
Q Consensus 253 ~----------------------------~~~~~~~~~l~~P~giaid~------~~~~lY~~d~~~~~I~~~~~dG~~~ 298 (357)
. ......-.....|.|+++.. ..+.+|+++...++|+++++++...
T Consensus 232 nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~ 311 (353)
T 2g8s_A 232 NYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKV 311 (353)
T ss_dssp BCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEE
T ss_pred cCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeE
Confidence 1 00000001123689999963 2589999999999999999876422
Q ss_pred ---EEEecCCCCceEEEEEE-CCEEEEE-eCCCCeEEEEeC
Q psy13635 299 ---RELINENLPHVFGISLL-GDYVYWT-DWQRRSIDRVNK 334 (357)
Q Consensus 299 ---~~i~~~~~~~p~gia~~-~~~ly~t-d~~~~~I~~~~~ 334 (357)
..++......|.+|+++ +|.||++ |..+++|+|+.+
T Consensus 312 ~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I~ri~~ 352 (353)
T 2g8s_A 312 TEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGELLKVSP 352 (353)
T ss_dssp EEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEEEEEEC
T ss_pred eeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEEEEEeC
Confidence 22333335689999998 5889996 667899999864
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.5e-16 Score=140.56 Aligned_cols=218 Identities=16% Similarity=0.182 Sum_probs=162.3
Q ss_pred EEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCC
Q psy13635 109 HNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVAR 188 (357)
Q Consensus 109 ~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~ 188 (357)
.+.+..++..|+|+++|+.++.|||++...++|.+++.++. .+.+.. ....|.++++|+ .+
T Consensus 20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~-----------------~~~~~~~l~~~~-dg 80 (296)
T 3e5z_A 20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMH-----------------PSHHQNGHCLNK-QG 80 (296)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEES-----------------SCSSEEEEEECT-TC
T ss_pred EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEEC-----------------CCCCcceeeECC-CC
Confidence 56677788899999999877779999999999999999987 444321 123689999995 66
Q ss_pred eEEEEeCCCCeEEEEEc-CCCceEEEec---CCCCCceEEEEeCCCCEEEEEeCC--C-------------CCCeEEEEe
Q psy13635 189 NLYWTDTGTDRIEVCRL-EGTHRKVLVN---TDLVEPRAITLSPAHGYLFWSDWN--E-------------KRPKIERSL 249 (357)
Q Consensus 189 ~lY~td~~~~~I~~~~~-~g~~~~~~~~---~~~~~P~giavd~~~g~Ly~~d~~--~-------------~~~~I~~~~ 249 (357)
+||+++.+.+.|.++++ +|+....... .....|+++++|+ +|+||++|.. . ..+.|++++
T Consensus 81 ~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~ 159 (296)
T 3e5z_A 81 HLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLA 159 (296)
T ss_dssp CEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEEC
T ss_pred cEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEEC
Confidence 89999988889999998 5654332211 1245789999998 4899998751 0 125899999
Q ss_pred cCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCC--CCC---eEEEecCCCCceEEEEEE-CCEEEEEe
Q psy13635 250 LNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFD--GNN---RRELINENLPHVFGISLL-GDYVYWTD 323 (357)
Q Consensus 250 ~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~d--G~~---~~~i~~~~~~~p~gia~~-~~~ly~td 323 (357)
.+|.. . .+...+..|+|+++++.+..| |++...++|++++.+ |.. .+.+ ......|.+|+++ +|++|++.
T Consensus 160 ~~g~~-~-~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~ 235 (296)
T 3e5z_A 160 PDGTL-S-APIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA 235 (296)
T ss_dssp TTSCE-E-EEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE
T ss_pred CCCCE-E-EeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc
Confidence 88543 2 334677899999999766666 999999999999985 332 2333 3345679999998 68999998
Q ss_pred CCCCeEEEEeCccCceeEEEecccCCceeee
Q psy13635 324 WQRRSIDRVNKITGNDREVIIERSCTGVTRR 354 (357)
Q Consensus 324 ~~~~~I~~~~~~~g~~~~~i~~~l~~p~~i~ 354 (357)
.+.|.++++ +|+....+..... |..+.
T Consensus 236 --~~~v~~~~~-~g~~~~~~~~~~~-~~~~~ 262 (296)
T 3e5z_A 236 --GDGVHVLTP-DGDELGRVLTPQT-TSNLC 262 (296)
T ss_dssp --TTEEEEECT-TSCEEEEEECSSC-CCEEE
T ss_pred --CCeEEEECC-CCCEEEEEECCCC-ceeEE
Confidence 679999998 5887776655443 55443
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-16 Score=143.17 Aligned_cols=213 Identities=17% Similarity=0.215 Sum_probs=159.2
Q ss_pred EEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCC
Q psy13635 109 HNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVAR 188 (357)
Q Consensus 109 ~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~ 188 (357)
.+.+..++..++|+++++.++.|||+|..+++|.+++.+|... .+... ...|.++++|+ .|
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~-~~~~~-----------------~~~~~gl~~d~-dG 97 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVD-VLLDA-----------------TAFTNGNAVDA-QQ 97 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEE-EEEES-----------------CSCEEEEEECT-TS
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEE-EEeCC-----------------CCccceeeECC-CC
Confidence 5667788889999999998888999999999999999977643 22211 13689999996 56
Q ss_pred eEEEEeCCCCeEEEEEcCCCceEEEec---CCCCCceEEEEeCCCCEEEEEeCC--C-------------CCCeEEEEec
Q psy13635 189 NLYWTDTGTDRIEVCRLEGTHRKVLVN---TDLVEPRAITLSPAHGYLFWSDWN--E-------------KRPKIERSLL 250 (357)
Q Consensus 189 ~lY~td~~~~~I~~~~~~g~~~~~~~~---~~~~~P~giavd~~~g~Ly~~d~~--~-------------~~~~I~~~~~ 250 (357)
+||+++.+.++|.+++++|+....... ..+..|+++++++ +|.||++|.. . ....|++++.
T Consensus 98 ~l~v~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~ 176 (305)
T 3dr2_A 98 RLVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPP 176 (305)
T ss_dssp CEEEEETTTTEEEEECTTSCEEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECS
T ss_pred CEEEEECCCCEEEEECCCCCEEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcC
Confidence 799999888899999998764332211 1246799999997 5899998741 0 0257999998
Q ss_pred CCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCC-----CeEEEEeCCCCC---eEEEecCCCCceEEEEEE-CCEEEE
Q psy13635 251 NGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKT-----DKIEMIDFDGNN---RRELINENLPHVFGISLL-GDYVYW 321 (357)
Q Consensus 251 dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~-----~~I~~~~~dG~~---~~~i~~~~~~~p~gia~~-~~~ly~ 321 (357)
++.....+. .+..|+|+++++++..|||++... +.|++++.++.. .+.+.......|.||+++ +|+||+
T Consensus 177 ~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv 254 (305)
T 3dr2_A 177 DGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS 254 (305)
T ss_dssp SSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE
T ss_pred CCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE
Confidence 655444443 678899999998888899999874 799999987543 223332234578999998 588888
Q ss_pred EeCCCCeEEEEeCccCceeEEEecc
Q psy13635 322 TDWQRRSIDRVNKITGNDREVIIER 346 (357)
Q Consensus 322 td~~~~~I~~~~~~~g~~~~~i~~~ 346 (357)
+. .+.|+++++ +|+....+...
T Consensus 255 ~~--~~gv~~~~~-~g~~~~~~~~~ 276 (305)
T 3dr2_A 255 SS--GTGVCVFDS-DGQLLGHIPTP 276 (305)
T ss_dssp CC--SSEEEEECT-TSCEEEEEECS
T ss_pred ec--CCcEEEECC-CCCEEEEEECC
Confidence 87 356999998 78877766543
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-14 Score=132.93 Aligned_cols=289 Identities=11% Similarity=-0.008 Sum_probs=196.8
Q ss_pred CeEEEEEe--CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCC
Q psy13635 41 AQMLLFAT--SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLIT 118 (357)
Q Consensus 41 ~~~l~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 118 (357)
...+++++ .+.|..+|+.++............+ ++++++.++.||+++..++.|+.+++.+... ....+. .-..
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~--~~~~~~-~~~~ 84 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP--KVVAIQ-EGQS 84 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC--EEEEEE-ECSS
T ss_pred CCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce--eEEecc-cCCC
Confidence 34555555 4579999987644333333445566 9999998889999999889999999987641 022222 2356
Q ss_pred cee-EEEEcCCCeEEEEeCCCC--EEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeC
Q psy13635 119 PDG-LAIDWLTEKLYWTDSETN--KLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDT 195 (357)
Q Consensus 119 p~g-lavd~~~~~ly~td~~~~--~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~ 195 (357)
|.. +++++.++.||.++...+ .|.+++++..........+ ..|.++++++.++.||+++.
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-----------------~~~~~~~~spdg~~l~~~~~ 147 (331)
T 3u4y_A 85 SMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-----------------YDAVGIAISPNGNGLILIDR 147 (331)
T ss_dssp CCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-----------------TTEEEEEECTTSSCEEEEEE
T ss_pred CccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-----------------CCccceEECCCCCEEEEEec
Confidence 778 999998888994443334 9999998765543333221 36889999988888999998
Q ss_pred CCCe-EEEEEcCCCce-----EEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCce---EEEeeCCCCCc
Q psy13635 196 GTDR-IEVCRLEGTHR-----KVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGER---VLLVKDRLGWP 266 (357)
Q Consensus 196 ~~~~-I~~~~~~g~~~-----~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~---~~~~~~~l~~P 266 (357)
..+. |.+.+++.... .... .....|.+++++|.+.+||++.... +.|...+++.... ...+.. -..|
T Consensus 148 ~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~--~~v~v~d~~~~~~~~~~~~~~~-~~~~ 223 (331)
T 3u4y_A 148 SSANTVRRFKIDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIG--NSIGILETQNPENITLLNAVGT-NNLP 223 (331)
T ss_dssp TTTTEEEEEEECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTT--TEEEEEECSSTTSCEEEEEEEC-SSCC
T ss_pred CCCceEEEEEECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCC--CeEEEEECCCCcccceeeeccC-CCCC
Confidence 8777 77776653221 1122 2345799999999877899999874 5899999875554 333333 3678
Q ss_pred eEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEE---ecC--CCCc----eEEEEEE--CCEEEEEeCCCCeEEEEeCc
Q psy13635 267 NGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRREL---INE--NLPH----VFGISLL--GDYVYWTDWQRRSIDRVNKI 335 (357)
Q Consensus 267 ~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i---~~~--~~~~----p~gia~~--~~~ly~td~~~~~I~~~~~~ 335 (357)
.++++++++..||++....+.|..++......+.+ ... .... ..++++. +..||+++...+.|..++.
T Consensus 224 ~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~- 302 (331)
T 3u4y_A 224 GTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTI- 302 (331)
T ss_dssp CCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEET-
T ss_pred ceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEe-
Confidence 99999988888999998888999999875443222 111 0111 1235664 5789999998899999997
Q ss_pred cCceeEEEecccCCceeeeec
Q psy13635 336 TGNDREVIIERSCTGVTRRRT 356 (357)
Q Consensus 336 ~g~~~~~i~~~l~~p~~i~~~ 356 (357)
.++.... ..++....++..|
T Consensus 303 ~~~~~~~-~~~~~~~g~~~~~ 322 (331)
T 3u4y_A 303 SGKVVGY-VAGIEANGGIAIC 322 (331)
T ss_dssp TSCEEEE-CTTCCCBSCEEEC
T ss_pred cCCcccc-eecccccCCeEEE
Confidence 4444333 3344444444444
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-13 Score=128.04 Aligned_cols=278 Identities=18% Similarity=0.188 Sum_probs=208.4
Q ss_pred eEEEEEe--CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCc
Q psy13635 42 QMLLFAT--SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITP 119 (357)
Q Consensus 42 ~~l~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p 119 (357)
++++++. .+.|+..|+... +..........+.++++++.+..||++...++.|+..++.... ....+..+ ..|
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~---~~~~~~~~-~~v 76 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSN-KVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN---VIATVPAG-SSP 76 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTT-EEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE---EEEEEECS-SSE
T ss_pred CEEEEEcCCCCEEEEEECCCC-eEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCe---EEEEEECC-CCc
Confidence 4455555 356888998763 3333444556799999999888999998888999999987653 22333322 388
Q ss_pred eeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCe
Q psy13635 120 DGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDR 199 (357)
Q Consensus 120 ~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~ 199 (357)
.++++++.++.||++....+.|.+.++............ ..|.++++++.++.||++....+.
T Consensus 77 ~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-----------------~~~~~~~~s~dg~~l~~~~~~~~~ 139 (391)
T 1l0q_A 77 QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-----------------KSPLGLALSPDGKKLYVTNNGDKT 139 (391)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-----------------SSEEEEEECTTSSEEEEEETTTTE
T ss_pred cceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-----------------CCcceEEECCCCCEEEEEeCCCCE
Confidence 999999988889999988899999999876544333221 257889999888889999998899
Q ss_pred EEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEE
Q psy13635 200 IEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLY 279 (357)
Q Consensus 200 I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY 279 (357)
|...++........... ...|.+++++|.+..||++.... +.|...++........+.. ...|.++++++.+..||
T Consensus 140 v~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~--~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~ 215 (391)
T 1l0q_A 140 VSVINTVTKAVINTVSV-GRSPKGIAVTPDGTKVYVANFDS--MSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAY 215 (391)
T ss_dssp EEEEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEETTT--TEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEE
T ss_pred EEEEECCCCcEEEEEec-CCCcceEEECCCCCEEEEEeCCC--CEEEEEECCCCeEEEEEec-CCCccceEECCCCCEEE
Confidence 99999876544443332 36789999999878899988774 5899999887655554433 35789999998888999
Q ss_pred EEeC--CCCeEEEEeCCCCCeEEEecCCCCceEEEEEE--CCEEEEEeCCCCeEEEEeCccCceeEEEecc
Q psy13635 280 WCDA--KTDKIEMIDFDGNNRRELINENLPHVFGISLL--GDYVYWTDWQRRSIDRVNKITGNDREVIIER 346 (357)
Q Consensus 280 ~~d~--~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~--~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~ 346 (357)
++.. ..+.|...++........+. ....|.++++. +..+|++....+.|...+..+++....+..+
T Consensus 216 ~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~ 285 (391)
T 1l0q_A 216 VTNVDKYFNTVSMIDTGTNKITARIP-VGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVG 285 (391)
T ss_dssp EEEECSSCCEEEEEETTTTEEEEEEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred EEecCcCCCcEEEEECCCCeEEEEEe-cCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECC
Confidence 9886 67899999987654433433 24468888887 4589999888899999998888877766543
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.3e-15 Score=134.88 Aligned_cols=244 Identities=12% Similarity=0.119 Sum_probs=172.4
Q ss_pred cceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEE----EEeCCcCCceeEEEEcC---CCeEEEE
Q psy13635 62 KPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHN----VITNGLITPDGLAIDWL---TEKLYWT 134 (357)
Q Consensus 62 ~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~----~~~~~~~~p~glavd~~---~~~ly~t 134 (357)
..+.+...+..|++|++.+ ++.||+++...++|++++.++... .... +...+...|.|||+++. ++.||++
T Consensus 23 ~~~~va~gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~-~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~ 100 (347)
T 3das_A 23 VLRTVATGLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRK-TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAY 100 (347)
T ss_dssp EEEEEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEE
T ss_pred eeEEeecCCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcE-eeecccCceeecCCCCceeeEeccccccCCEEEEE
Confidence 4556778899999999998 578999999889999998764431 1111 12345678999999984 7889986
Q ss_pred e--CCCCEEEEEEcCCC--------ceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeC---------
Q psy13635 135 D--SETNKLEVSSLDGK--------KRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDT--------- 195 (357)
Q Consensus 135 d--~~~~~I~~~~~~g~--------~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~--------- 195 (357)
. ...++|.|+.+++. ..++++.. +|....+....|++++ .|+||++..
T Consensus 101 yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~------------~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~q 167 (347)
T 3das_A 101 FTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRG------------IPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQ 167 (347)
T ss_dssp EECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEE------------ECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTT
T ss_pred EecCCCCEEEEEEeCCCCcccccCCCcEEEEEc------------CCCCCCccCccccCCC-CCCEEEEECCCCCCcccc
Confidence 4 35679999998762 12333321 1233456788899996 679999942
Q ss_pred ----CCCeEEEEEcCCC--------ceEEEecCCCCCceEEEEeCCCCEEEEEeCCCC-CCeEEEEecCCCce-------
Q psy13635 196 ----GTDRIEVCRLEGT--------HRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEK-RPKIERSLLNGGER------- 255 (357)
Q Consensus 196 ----~~~~I~~~~~~g~--------~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~-~~~I~~~~~dg~~~------- 255 (357)
..++|.|++++|+ ..++ ...++.+|.|+++|| .|.||++|.+.. .-.|.++.. |.+.
T Consensus 168 d~~~~~G~IlRi~~dG~ip~~nPf~~~~i-~a~G~RNp~Gla~dp-~G~L~~~d~g~~~~deln~i~~-G~nyGwP~~~g 244 (347)
T 3das_A 168 DRKSLGGKILRMTPDGEPAPGNPFPGSPV-YSYGHRNVQGLAWDD-KQRLFASEFGQDTWDELNAIKP-GDNYGWPEAEG 244 (347)
T ss_dssp CTTCSTTCEEEECTTSSBCTTCSSTTCCE-EEBCCSBCCEEEECT-TCCEEEEECCSSSCEEEEEECT-TCBCCTTTCCS
T ss_pred CCCCCCCEEEEEeCCCCccCCCCCCCCeE-EeeCCCCcceEEECC-CCCEEEEecCCCCCceeeEEcC-CCEecCCcccC
Confidence 2469999999997 3334 345789999999999 599999998753 124444432 2110
Q ss_pred ----------EEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCC----eEEEecCCCCceEEEEEE-CCEEE
Q psy13635 256 ----------VLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNN----RRELINENLPHVFGISLL-GDYVY 320 (357)
Q Consensus 256 ----------~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~----~~~i~~~~~~~p~gia~~-~~~ly 320 (357)
...+......|.|+++. ++.+|+++....+|.++.+++.. .+.++......|.+|++. +|.||
T Consensus 245 ~~~~~~~~~P~~~~~~~~~ap~G~~~~--~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~ly 322 (347)
T 3das_A 245 KGGGSGFHDPVAQWSTDEASPSGIAYA--EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLW 322 (347)
T ss_dssp SCCCTTCCCCSEEECTTTCCEEEEEEE--TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEE
T ss_pred CCCCccccCCcEecCCCCCCCcceEEE--cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEE
Confidence 01111122478999994 78999999999999999987653 244555556789999998 79999
Q ss_pred EEeCC
Q psy13635 321 WTDWQ 325 (357)
Q Consensus 321 ~td~~ 325 (357)
+++..
T Consensus 323 v~td~ 327 (347)
T 3das_A 323 LVTSN 327 (347)
T ss_dssp EEECT
T ss_pred EEEcC
Confidence 98654
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-15 Score=139.86 Aligned_cols=230 Identities=17% Similarity=0.115 Sum_probs=161.1
Q ss_pred EEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCC--
Q psy13635 109 HNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWV-- 186 (357)
Q Consensus 109 ~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~-- 186 (357)
.+++..++..|.+|++++ .++||+++.. ++|.+++.+|. +.+..... .......|.||++++.
T Consensus 21 ~~~va~~l~~P~~ia~~p-dG~l~V~e~~-g~I~~~d~~G~--~~~~~~~v-----------~~~g~~g~~gia~~pdf~ 85 (354)
T 3a9g_A 21 ISEVASDLEVPWSIAPLG-GGRYLVTERP-GRLVLISPSGK--KLVASFDV-----------ANVGEAGLLGLALHPEFP 85 (354)
T ss_dssp EEEEECSCSCEEEEEEEE-TTEEEEEETT-TEEEEECSSCE--EEEEECCC-----------CCSTTCSEEEEEECTTTT
T ss_pred EEEEeCCCCCCeEEEEcC-CCeEEEEeCC-CEEEEEeCCCc--eEeeccce-----------eecCCCceeeEEeCCCCC
Confidence 567778899999999997 6789999987 99999987776 33321110 0223457999999987
Q ss_pred -CCeEEEEeCC---C----CeEEEEEcCCC-----ceEEEec----CCCCCceEEEEeCCCCEEEEEeCCC---------
Q psy13635 187 -ARNLYWTDTG---T----DRIEVCRLEGT-----HRKVLVN----TDLVEPRAITLSPAHGYLFWSDWNE--------- 240 (357)
Q Consensus 187 -~~~lY~td~~---~----~~I~~~~~~g~-----~~~~~~~----~~~~~P~giavd~~~g~Ly~~d~~~--------- 240 (357)
++.||+++.. . ++|.+++.++. ..++++. .....|.+|+++|. |+||++....
T Consensus 86 ~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pD-G~Lyvt~G~~~~~~~~~d~ 164 (354)
T 3a9g_A 86 KKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPD-GMLYITTGDAADPRLAQDL 164 (354)
T ss_dssp TSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTT-SCEEEECCCTTCGGGGTCT
T ss_pred cCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCC-CcEEEEECCCCCCccccCC
Confidence 8999999863 3 68999998875 2333322 23457899999985 8999996421
Q ss_pred --CCCeEEEEecCCCc-------eEEEeeCCCCCceEEEEecCCCEEEEEeCCCCe---EEEEeCCCCC-----------
Q psy13635 241 --KRPKIERSLLNGGE-------RVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDK---IEMIDFDGNN----------- 297 (357)
Q Consensus 241 --~~~~I~~~~~dg~~-------~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~---I~~~~~dG~~----------- 297 (357)
..++|.|++.+|+. ..+++..++.+|.||++|+.+++||++|.+.+. |..+...+.-
T Consensus 165 ~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~ 244 (354)
T 3a9g_A 165 SSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGR 244 (354)
T ss_dssp TCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCC
T ss_pred CCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCC
Confidence 13689999999862 234556788999999999778999999987754 6666542210
Q ss_pred ---eEE-Eec-CCCCceEEEEE--------ECCEEEEEeCCCCeEEEEeCcc-Ccee--EEEecc-cCCceeee
Q psy13635 298 ---RRE-LIN-ENLPHVFGISL--------LGDYVYWTDWQRRSIDRVNKIT-GNDR--EVIIER-SCTGVTRR 354 (357)
Q Consensus 298 ---~~~-i~~-~~~~~p~gia~--------~~~~ly~td~~~~~I~~~~~~~-g~~~--~~i~~~-l~~p~~i~ 354 (357)
... ... .....|.|+++ .+|.+|++++..++|.+++... |+.. +.+..+ ...|.++.
T Consensus 245 ~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~ 318 (354)
T 3a9g_A 245 GEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVV 318 (354)
T ss_dssp TTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEE
T ss_pred CCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEE
Confidence 000 111 12346999999 4689999999999999998743 3322 334432 45677765
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.4e-14 Score=130.85 Aligned_cols=278 Identities=17% Similarity=0.160 Sum_probs=182.3
Q ss_pred ccCCCcEEEEEEEccCCEEEEEeCC--CCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEE
Q psy13635 67 IKDLEEGAAIDYYYKKSMVCWTDHG--TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVS 144 (357)
Q Consensus 67 ~~~~~~~~~i~~d~~~~~ly~~d~~--~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~ 144 (357)
......|.+++++++ ++||+++.. ++.|+.+++++... ............|.++++++.++.||+++...+.|..+
T Consensus 36 ~~~~~~p~~~a~spd-g~l~~~~~~~~~~~v~~~~~~~g~~-~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 36 LAATQNPTYLALSAK-DCLYSVDKEDDEGGIAAWQIDGQTA-HKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVM 113 (347)
T ss_dssp EEECSCCCCEEECTT-CEEEEEEEETTEEEEEEEEEETTEE-EEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eeccCCcceEEEccC-CeEEEEEecCCCceEEEEEecCCcE-EEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 345678999999985 459998763 57898888876531 11122223456899999999888899999888899888
Q ss_pred EcCCC-ceEEEEecCC--CCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcC--CCceEE--EecCC
Q psy13635 145 SLDGK-KRKVLYWEDI--DQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLE--GTHRKV--LVNTD 217 (357)
Q Consensus 145 ~~~g~-~~~~~~~~~~--~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~--g~~~~~--~~~~~ 217 (357)
+++.. ..+.+..... ..|. +......|.++++++.++ +|+++...++|...+++ |..... +....
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~p~-------~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~ 185 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGHGPR-------PEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEA 185 (347)
T ss_dssp EECTTSCEEEEEEEECCCCCSS-------TTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCT
T ss_pred EeCCCCCeeecceeecCCCCCC-------ccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCC
Confidence 87522 2222211100 0110 011223577899998766 99999998999888877 332211 11223
Q ss_pred CCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCC--CceEEE--eeCC------CCCceEEEEecCCCEEEEEeCCCCe
Q psy13635 218 LVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNG--GERVLL--VKDR------LGWPNGITLDVDNEKLYWCDAKTDK 287 (357)
Q Consensus 218 ~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg--~~~~~~--~~~~------l~~P~giaid~~~~~lY~~d~~~~~ 287 (357)
...|.+++++|.+.+||+++... +.|...+++. .....+ .... ...|.++++++++..||+++...+.
T Consensus 186 g~~p~~~~~spdg~~l~v~~~~~--~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~ 263 (347)
T 3hfq_A 186 GFGPRHLVFSPDGQYAFLAGELS--SQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNT 263 (347)
T ss_dssp TCCEEEEEECTTSSEEEEEETTT--TEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTE
T ss_pred CCCCceEEECCCCCEEEEEeCCC--CEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCE
Confidence 35799999999877799998874 4777777663 222211 1111 1458899999888889999988889
Q ss_pred EEEEeCCCCC-eEEE--ecCCCCceEEEEEE--CCEEEEEeCCCCeEEEE--eCccCceeEEEe-cccCCceeeeec
Q psy13635 288 IEMIDFDGNN-RREL--INENLPHVFGISLL--GDYVYWTDWQRRSIDRV--NKITGNDREVII-ERSCTGVTRRRT 356 (357)
Q Consensus 288 I~~~~~dG~~-~~~i--~~~~~~~p~gia~~--~~~ly~td~~~~~I~~~--~~~~g~~~~~i~-~~l~~p~~i~~~ 356 (357)
|..++++..+ .+.+ +......|.++++. +.+||+++...+.|..+ +..+|+...+-. ..+..|.-+++.
T Consensus 264 v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~~~~~~~~p~p~~~~~~ 340 (347)
T 3hfq_A 264 LAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSLLQKDVTVPEGVCVRFL 340 (347)
T ss_dssp EEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEECTTEEEEEEC
T ss_pred EEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEecccceecCCCcEEEeh
Confidence 9888876322 1112 22234578999997 46899999887876655 766677655432 356677776653
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-14 Score=132.34 Aligned_cols=248 Identities=11% Similarity=0.079 Sum_probs=178.2
Q ss_pred ceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCC----
Q psy13635 63 PVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSET---- 138 (357)
Q Consensus 63 ~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~---- 138 (357)
...+......+.++++++ +++|||++...+.|++++.++.. ...+.......|.++++|+ .+++|+++...
T Consensus 37 ~~~~~~~~~~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~ 111 (333)
T 2dg1_A 37 WLEISKKGLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKE---IKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKST 111 (333)
T ss_dssp EEEEESSCCCEEEEEECT-TSCEEEEETTTCEEEEECTTTCC---EEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSC
T ss_pred eEEEeccCccccCcEECC-CCCEEEEECCCCEEEEEeCCCCc---EEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCC
Confidence 334445666789999996 56799999988999999998764 2333333446799999996 57899998766
Q ss_pred CEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC------CCeEEEEEcCCCceEE
Q psy13635 139 NKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG------TDRIEVCRLEGTHRKV 212 (357)
Q Consensus 139 ~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~------~~~I~~~~~~g~~~~~ 212 (357)
+.|.+++.++...+.+.... .....|.++++|+ .+++|+++.. ...|+++++++.....
T Consensus 112 ~~i~~~d~~~~~~~~~~~~~--------------~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~ 176 (333)
T 2dg1_A 112 GGIFAATENGDNLQDIIEDL--------------STAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP 176 (333)
T ss_dssp CEEEEECTTSCSCEEEECSS--------------SSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEE
T ss_pred ceEEEEeCCCCEEEEEEccC--------------ccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEE
Confidence 79999999887665443211 1124689999996 5689999875 3589999988755444
Q ss_pred EecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecC--CCceEE-----Eee-CCCCCceEEEEecCCCEEEEEeCC
Q psy13635 213 LVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLN--GGERVL-----LVK-DRLGWPNGITLDVDNEKLYWCDAK 284 (357)
Q Consensus 213 ~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~d--g~~~~~-----~~~-~~l~~P~giaid~~~~~lY~~d~~ 284 (357)
+.. ....|.+++++|.+..||+++... +.|.+.+.+ |..... ... .+...|.++++| .+++||+++..
T Consensus 177 ~~~-~~~~~~~i~~~~dg~~l~v~~~~~--~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d-~~G~l~v~~~~ 252 (333)
T 2dg1_A 177 IIQ-NISVANGIALSTDEKVLWVTETTA--NRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCID-SDDNLYVAMYG 252 (333)
T ss_dssp EEE-EESSEEEEEECTTSSEEEEEEGGG--TEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEB-TTCCEEEEEET
T ss_pred eec-CCCcccceEECCCCCEEEEEeCCC--CeEEEEEecCCCcCcccccceEEEecCCCCCCCceEEC-CCCCEEEEEcC
Confidence 432 356799999999766899999764 489999984 433221 111 122479999999 57889999988
Q ss_pred CCeEEEEeCCCCCeEEEecCC-----CCceEEEEEE--CCEEEEEeCC-----CCeEEEEeC
Q psy13635 285 TDKIEMIDFDGNNRRELINEN-----LPHVFGISLL--GDYVYWTDWQ-----RRSIDRVNK 334 (357)
Q Consensus 285 ~~~I~~~~~dG~~~~~i~~~~-----~~~p~gia~~--~~~ly~td~~-----~~~I~~~~~ 334 (357)
.+.|.+++.+|.....+.... +..|.++++. ++.||++... .+.|++++.
T Consensus 253 ~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~ 314 (333)
T 2dg1_A 253 QGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG 314 (333)
T ss_dssp TTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred CCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEec
Confidence 889999999877655543221 1268899986 3589998765 347888875
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-13 Score=125.38 Aligned_cols=295 Identities=13% Similarity=0.109 Sum_probs=194.0
Q ss_pred eEEEEEe--CCcEEEEEcCCCCc--ceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcC--CCCcceeEEEEeCC
Q psy13635 42 QMLLFAT--SKDIRIANLSRPLK--PVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFD--GNNVGSKHNVITNG 115 (357)
Q Consensus 42 ~~l~~~~--~~~i~~~~~~~~~~--~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~--g~~~~~~~~~~~~~ 115 (357)
.+++.++ .+.|+.++++.... ..........|.++++++.++.||+++..++.|...+++ +... .....+..
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~- 82 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL-TFAAESAL- 82 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE-EEEEEEEC-
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce-eecccccc-
Confidence 4555553 45688888753222 222344566788999999888999999887888887776 4321 11112222
Q ss_pred cCCceeEEEEcCCCeEEEEeCCCCEEEEEEcC-CCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEe
Q psy13635 116 LITPDGLAIDWLTEKLYWTDSETNKLEVSSLD-GKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTD 194 (357)
Q Consensus 116 ~~~p~glavd~~~~~ly~td~~~~~I~~~~~~-g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td 194 (357)
...|.++++++.++.||+++...+.|..++++ |...+.+... .....|.++++++.++.||+++
T Consensus 83 ~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~---------------~~~~~~~~~~~s~dg~~l~~~~ 147 (343)
T 1ri6_A 83 PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV---------------EGLDGCHSANISPDNRTLWVPA 147 (343)
T ss_dssp SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE---------------CCCTTBCCCEECTTSSEEEEEE
T ss_pred CCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccc---------------cCCCCceEEEECCCCCEEEEec
Confidence 23899999999888899999888899998873 3222222111 1123588999998888999999
Q ss_pred CCCCeEEEEEcCC-CceE-----EEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCC--CceE--EEee---C
Q psy13635 195 TGTDRIEVCRLEG-THRK-----VLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNG--GERV--LLVK---D 261 (357)
Q Consensus 195 ~~~~~I~~~~~~g-~~~~-----~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg--~~~~--~~~~---~ 261 (357)
...+.|.+.+++. .... .........|.+++++|.+.+||++.... +.|...+++. .... .... .
T Consensus 148 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~--~~i~~~~~~~~~g~~~~~~~~~~~~~ 225 (343)
T 1ri6_A 148 LKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELN--SSVDVWELKDPHGNIECVQTLDMMPE 225 (343)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTT--TEEEEEESSCTTSCCEEEEEEECSCT
T ss_pred CCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCC--CEEEEEEecCCCCcEEEEeeccccCc
Confidence 7778899988764 3222 12222335799999999877899998664 5888888854 2221 1111 1
Q ss_pred C---CCCceEEEEecCCCEEEEEeCCCCeEEEEeCC--CCCeEEEec-CCCCceEEEEEE--CCEEEEEeCCCCeEEEE-
Q psy13635 262 R---LGWPNGITLDVDNEKLYWCDAKTDKIEMIDFD--GNNRRELIN-ENLPHVFGISLL--GDYVYWTDWQRRSIDRV- 332 (357)
Q Consensus 262 ~---l~~P~giaid~~~~~lY~~d~~~~~I~~~~~d--G~~~~~i~~-~~~~~p~gia~~--~~~ly~td~~~~~I~~~- 332 (357)
+ ...|.++++++.+..||++....+.|..++.+ +...+.+.. .....|.++++. +..||+++...+.|..+
T Consensus 226 ~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 226 NFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYE 305 (343)
T ss_dssp TCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred cccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEE
Confidence 1 34677899998888999999888999999886 333222211 122348888886 46799998777776654
Q ss_pred -eCccCceeEEE-ecccCCceeeee
Q psy13635 333 -NKITGNDREVI-IERSCTGVTRRR 355 (357)
Q Consensus 333 -~~~~g~~~~~i-~~~l~~p~~i~~ 355 (357)
+..+|+...+- ......|..+..
T Consensus 306 ~d~~~g~~~~~~~~~~g~~p~~i~~ 330 (343)
T 1ri6_A 306 IVGEQGLLHEKGRYAVGQGPMWVVV 330 (343)
T ss_dssp EETTTTEEEEEEEEECSSSCCEEEE
T ss_pred EcCCCceeeEccccccCCCCeeEEE
Confidence 66556543322 122357777754
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.69 E-value=8.8e-15 Score=132.55 Aligned_cols=228 Identities=15% Similarity=0.163 Sum_probs=161.8
Q ss_pred EEEEeCCcCCceeEEEEcCCCeEEEE-------eCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceE
Q psy13635 109 HNVITNGLITPDGLAIDWLTEKLYWT-------DSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGV 181 (357)
Q Consensus 109 ~~~~~~~~~~p~glavd~~~~~ly~t-------d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~gl 181 (357)
...+..++..|+++++| .++.||++ +...+.|.++++.......+..... ......|.++
T Consensus 10 ~~~~~~~~~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~------------~~~~~~~~~i 76 (314)
T 1pjx_A 10 FTKVTEDIPGAEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEV------------NGYGGIPAGC 76 (314)
T ss_dssp CEEEECCCTTCEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEE------------TTEECCEEEE
T ss_pred HhhhhccCCCccCceEC-CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEeccc------------CCCCCCCceE
Confidence 34567889999999999 57899999 7778899999965444433321000 0112468999
Q ss_pred EEeCCCCeEEEEeCCCCeEEEEEcCCCceEEE-ecC----CCCCceEEEEeCCCCEEEEEeCCCC-------------CC
Q psy13635 182 AVDWVARNLYWTDTGTDRIEVCRLEGTHRKVL-VNT----DLVEPRAITLSPAHGYLFWSDWNEK-------------RP 243 (357)
Q Consensus 182 avD~~~~~lY~td~~~~~I~~~~~~g~~~~~~-~~~----~~~~P~giavd~~~g~Ly~~d~~~~-------------~~ 243 (357)
++|+.+++||+++... .|.+++++|+. ..+ ... ....|+++++|+. |+||+++.... .+
T Consensus 77 ~~~~~~g~l~v~~~~~-~l~~~d~~g~~-~~~~~~~~~~~~~~~~~~i~~d~~-g~l~v~~~~~~~~~~~~~~~~~~~~~ 153 (314)
T 1pjx_A 77 QCDRDANQLFVADMRL-GLLVVQTDGTF-EEIAKKDSEGRRMQGCNDCAFDYE-GNLWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp EECSSSSEEEEEETTT-EEEEEETTSCE-EECCSBCTTSCBCBCCCEEEECTT-SCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred EEecCCCcEEEEECCC-CEEEEeCCCCE-EEEEeccCCCccccCCcCEEECCC-CCEEEEecCcccccccccccccCCCC
Confidence 9997658999998754 89999998543 333 221 2346999999975 89999987530 14
Q ss_pred eEEEEecCCCceEEEeeCCCCCceEEEEe----cCCCEEEEEeCCCCeEEEEeCCCCCe----EEEe--cCCC-CceEEE
Q psy13635 244 KIERSLLNGGERVLLVKDRLGWPNGITLD----VDNEKLYWCDAKTDKIEMIDFDGNNR----RELI--NENL-PHVFGI 312 (357)
Q Consensus 244 ~I~~~~~dg~~~~~~~~~~l~~P~giaid----~~~~~lY~~d~~~~~I~~~~~dG~~~----~~i~--~~~~-~~p~gi 312 (357)
.|++.+.+|.. ..+. ..+..|++++++ +.++.||+++...++|++++.++.+. ..+. .... ..|.++
T Consensus 154 ~l~~~~~~g~~-~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i 231 (314)
T 1pjx_A 154 SIYCFTTDGQM-IQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM 231 (314)
T ss_dssp EEEEECTTSCE-EEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE
T ss_pred eEEEECCCCCE-EEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCce
Confidence 89999988543 2222 345679999998 76668999999899999998753221 1121 1122 679999
Q ss_pred EEE-CCEEEEEeCCCCeEEEEeCccCceeEEEecccCCceeee
Q psy13635 313 SLL-GDYVYWTDWQRRSIDRVNKITGNDREVIIERSCTGVTRR 354 (357)
Q Consensus 313 a~~-~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~i~ 354 (357)
+++ +|.+|+++...+.|.++++.+|+....+......|.++.
T Consensus 232 ~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~ 274 (314)
T 1pjx_A 232 DFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLH 274 (314)
T ss_dssp EEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEE
T ss_pred EECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEE
Confidence 998 589999998889999999866887776665556666664
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-13 Score=126.38 Aligned_cols=230 Identities=13% Similarity=0.101 Sum_probs=164.2
Q ss_pred CCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCC
Q psy13635 69 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG 148 (357)
Q Consensus 69 ~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g 148 (357)
....+.+..+++.++.+||+|...+.|++++.++.. ...... -..|.++++++ .+++|++. .+.|.+++.++
T Consensus 47 ~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~----~~~~~~-~~~v~~i~~~~-dg~l~v~~--~~gl~~~d~~~ 118 (326)
T 2ghs_A 47 PMLLGEGPTFDPASGTAWWFNILERELHELHLASGR----KTVHAL-PFMGSALAKIS-DSKQLIAS--DDGLFLRDTAT 118 (326)
T ss_dssp CCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTE----EEEEEC-SSCEEEEEEEE-TTEEEEEE--TTEEEEEETTT
T ss_pred CCCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCc----EEEEEC-CCcceEEEEeC-CCeEEEEE--CCCEEEEECCC
Confidence 345688999999889999999999999999998763 222222 24689999996 57788876 34699999866
Q ss_pred CceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC------CCeEEEEEcCCCceEEEecCCCCCce
Q psy13635 149 KKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG------TDRIEVCRLEGTHRKVLVNTDLVEPR 222 (357)
Q Consensus 149 ~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~------~~~I~~~~~~g~~~~~~~~~~~~~P~ 222 (357)
...+.+..... ......|+++++|+ .|++|+++.. .+.|++++ +|+... +. .....|+
T Consensus 119 g~~~~~~~~~~------------~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~-~~-~~~~~~~ 182 (326)
T 2ghs_A 119 GVLTLHAELES------------DLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA-KGKVTK-LF-ADISIPN 182 (326)
T ss_dssp CCEEEEECSST------------TCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE-TTEEEE-EE-EEESSEE
T ss_pred CcEEEEeeCCC------------CCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe-CCcEEE-ee-CCCcccC
Confidence 55544432110 01123688999996 5678888753 35899998 665433 22 2446799
Q ss_pred EEEEeCCCCEEEEEeCCCCCCeEEEEecC---C-C--ceEEEee--CCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCC
Q psy13635 223 AITLSPAHGYLFWSDWNEKRPKIERSLLN---G-G--ERVLLVK--DRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFD 294 (357)
Q Consensus 223 giavd~~~g~Ly~~d~~~~~~~I~~~~~d---g-~--~~~~~~~--~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~d 294 (357)
++++++.+..||+++... +.|++.+.+ | . ....+.. .....|.++++| .+++||++....+.|.+++++
T Consensus 183 ~i~~s~dg~~lyv~~~~~--~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d-~~G~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 183 SICFSPDGTTGYFVDTKV--NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCD-AEGHIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp EEEECTTSCEEEEEETTT--CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEEC-TTSCEEEEEETTTEEEEECTT
T ss_pred CeEEcCCCCEEEEEECCC--CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEEC-CCCCEEEEEeCCCEEEEECCC
Confidence 999999877899999874 599999985 3 2 1233322 234579999999 678999999888899999998
Q ss_pred CCCeEEEecCCCCceEEEEEE-C--CEEEEEeCCC
Q psy13635 295 GNNRRELINENLPHVFGISLL-G--DYVYWTDWQR 326 (357)
Q Consensus 295 G~~~~~i~~~~~~~p~gia~~-~--~~ly~td~~~ 326 (357)
|.....+. .....|.++++. . +.||++....
T Consensus 260 g~~~~~i~-~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 260 GNHIARYE-VPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp CCEEEEEE-CSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred CCEEEEEE-CCCCCcEEEEEecCCCCEEEEEecCC
Confidence 76555443 234579999987 2 6899987665
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.67 E-value=9.3e-13 Score=121.92 Aligned_cols=275 Identities=13% Similarity=0.072 Sum_probs=181.2
Q ss_pred CCCcEEEEEEEccCCEEEEEeCC---CCeEEEEEcCC--CCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEE
Q psy13635 69 DLEEGAAIDYYYKKSMVCWTDHG---TEMISCCTFDG--NNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEV 143 (357)
Q Consensus 69 ~~~~~~~i~~d~~~~~ly~~d~~---~~~I~~~~~~g--~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~ 143 (357)
....|..+++++++..||.++.. .+.|....++. .. ..........-..|..+++ .++.||+++...+.|..
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~-~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~ 124 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGT-LHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITV 124 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTE-EEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCc-EEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEE
Confidence 56788899999988899999883 46665544443 22 1112223334467999999 47889999998899999
Q ss_pred EEcCCC--ce---EEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCc-------e-
Q psy13635 144 SSLDGK--KR---KVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTH-------R- 210 (357)
Q Consensus 144 ~~~~g~--~~---~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~-------~- 210 (357)
++++.. .. ..+...+. .|.. .......|.++++++.++.||+++.+.+.|.+.+++... .
T Consensus 125 ~~~~~~g~~~~~~~~~~~~g~-~~~~------~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~ 197 (361)
T 3scy_A 125 FPIGQDGALLPASDVIEFKGS-GPDK------ERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFL 197 (361)
T ss_dssp EEBCTTSCBCSCSEEEECCCC-CSCT------TTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCE
T ss_pred EEeCCCCcCcccceeEEccCC-CCCc------cccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCccccccee
Confidence 887532 11 11111110 0000 011123568899999888899999988888888776432 1
Q ss_pred -----EEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEe-----eCCCCCceEEEEecCCCEEEE
Q psy13635 211 -----KVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLV-----KDRLGWPNGITLDVDNEKLYW 280 (357)
Q Consensus 211 -----~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~-----~~~l~~P~giaid~~~~~lY~ 280 (357)
..........|++++++|...+||+++... +.|...+++......+. ......|.++++++++..||+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~--~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v 275 (361)
T 3scy_A 198 TKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIG--GTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYA 275 (361)
T ss_dssp EEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT--CEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEE
T ss_pred ecccccceecCCCCCCeEEEEcCCCCEEEEEcCCC--CeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEE
Confidence 122223456799999999877899999764 48888887654332221 123456889999988888999
Q ss_pred EeCC-CCeEEEEeCC--CCCeEEE--ecCCCCceEEEEEE--CCEEEEEeCCCCeEEE--EeCccCceeEEE-ecccCCc
Q psy13635 281 CDAK-TDKIEMIDFD--GNNRREL--INENLPHVFGISLL--GDYVYWTDWQRRSIDR--VNKITGNDREVI-IERSCTG 350 (357)
Q Consensus 281 ~d~~-~~~I~~~~~d--G~~~~~i--~~~~~~~p~gia~~--~~~ly~td~~~~~I~~--~~~~~g~~~~~i-~~~l~~p 350 (357)
++.. .+.|..++.+ ....+.+ ... ...|.++++. +.+||+++...+.|.. ++..+|+...+. ......|
T Consensus 276 ~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p 354 (361)
T 3scy_A 276 SNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKP 354 (361)
T ss_dssp EECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSE
T ss_pred ECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCC
Confidence 9988 7888887765 2222212 122 4578899987 4679999988787765 676667655443 2255678
Q ss_pred eeeeec
Q psy13635 351 VTRRRT 356 (357)
Q Consensus 351 ~~i~~~ 356 (357)
..|.+.
T Consensus 355 ~~v~~~ 360 (361)
T 3scy_A 355 VCLKFV 360 (361)
T ss_dssp EEEEEE
T ss_pred eEEEEc
Confidence 777653
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.4e-13 Score=124.02 Aligned_cols=235 Identities=13% Similarity=0.033 Sum_probs=171.1
Q ss_pred EEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCce-EEEEe
Q psy13635 78 YYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKR-KVLYW 156 (357)
Q Consensus 78 ~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~-~~~~~ 156 (357)
|+...+.+|+++..++.|..+++.... ....+..+...| ++++++.++.||+++...++|.++++..... .....
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~---~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~ 80 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDTLE---ILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ 80 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTTCC---EEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEE
T ss_pred EcCCCCEEEEEecCCCeEEEEeCcccc---eeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecc
Confidence 556678999999999999999988664 234444556667 9999998888999999889999999876554 32222
Q ss_pred cCCCCcceeeeeccCcccccCCce-EEEeCCCCeEEEEeCCCC--eEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEE
Q psy13635 157 EDIDQPRAIASYKLPTIEVEHPDG-VAVDWVARNLYWTDTGTD--RIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYL 233 (357)
Q Consensus 157 ~~~~~p~~i~~~~~~~~~~~~p~g-lavD~~~~~lY~td~~~~--~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~L 233 (357)
.+ ..|.. +++++.++.||.+....+ .|.+.+++......... ....|.+++++|.+.+|
T Consensus 81 ~~-----------------~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~spdg~~l 142 (331)
T 3u4y_A 81 EG-----------------QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP-IPYDAVGIAISPNGNGL 142 (331)
T ss_dssp EC-----------------SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE-CCTTEEEEEECTTSSCE
T ss_pred cC-----------------CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE-CCCCccceEECCCCCEE
Confidence 11 35777 999988888994444334 89999988655444333 34679999999987789
Q ss_pred EEEeCCCCCCe-EEEEecCCCceE-----EEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCC----eEEEec
Q psy13635 234 FWSDWNEKRPK-IERSLLNGGERV-----LLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNN----RRELIN 303 (357)
Q Consensus 234 y~~d~~~~~~~-I~~~~~dg~~~~-----~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~----~~~i~~ 303 (357)
|+++.... . |...+++..... ..+ .....|.++++++.+.+||++....+.|..++++... ...+.
T Consensus 143 ~~~~~~~~--~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~- 218 (331)
T 3u4y_A 143 ILIDRSSA--NTVRRFKIDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG- 218 (331)
T ss_dssp EEEEETTT--TEEEEEEECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE-
T ss_pred EEEecCCC--ceEEEEEECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc-
Confidence 99988754 5 665555432221 122 3345699999998777899999999999999986443 33332
Q ss_pred CCCCceEEEEEE--CCEEEEEeCCCCeEEEEeCccCce
Q psy13635 304 ENLPHVFGISLL--GDYVYWTDWQRRSIDRVNKITGND 339 (357)
Q Consensus 304 ~~~~~p~gia~~--~~~ly~td~~~~~I~~~~~~~g~~ 339 (357)
....|.++++. +.++|+++...+.|..++..+|+.
T Consensus 219 -~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 219 -TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp -CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred -CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence 34678888886 467999988888899999877766
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-14 Score=133.67 Aligned_cols=222 Identities=14% Similarity=0.153 Sum_probs=152.2
Q ss_pred CCceeEEEEcCCCeEEEEeCC--CC--EEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEE
Q psy13635 117 ITPDGLAIDWLTEKLYWTDSE--TN--KLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYW 192 (357)
Q Consensus 117 ~~p~glavd~~~~~ly~td~~--~~--~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~ 192 (357)
..|.++++++ ++++|++... .+ +|.+++ +|... -++..... ....+..|.|+++|+. ++|||
T Consensus 17 ~~p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~-~g~~~--~~p~~~~~---------~~~~~~~p~gv~~d~~-g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTP-DGRLFLSLHQFYQPEMQVAELT-QDGLI--PFPPQSGN---------AIITFDTVLGIKSDGN-GIVWM 82 (343)
T ss_dssp SCEEEEEECT-TSCEEEEECGGGCCSCSEEEEE-TTEEE--ESCCCCSS---------CCCCCSCEEEEEECSS-SEEEE
T ss_pred CCcceEEECC-CCCEEEEeCCCCCCceEEEEEC-CCCee--cCCCcccC---------cccceeEeeEEEEcCC-CcEEE
Confidence 6899999996 6789999642 23 788887 55321 11110000 1345678999999965 78999
Q ss_pred EeCC-----CCeEEEEEcC-CCceEEEecC-----CCCCceEEEEeCCCCEEEEEeC---CCCCCeEEEEecCCCceEEE
Q psy13635 193 TDTG-----TDRIEVCRLE-GTHRKVLVNT-----DLVEPRAITLSPAHGYLFWSDW---NEKRPKIERSLLNGGERVLL 258 (357)
Q Consensus 193 td~~-----~~~I~~~~~~-g~~~~~~~~~-----~~~~P~giavd~~~g~Ly~~d~---~~~~~~I~~~~~dg~~~~~~ 258 (357)
+|.+ ..+|.+++++ |+..+.+... ....|+++++|+.+|.+|++|. .. ..|.+.+++......+
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~--~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDK--AALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGG--CEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCC--CeEEEEECCCCCEEEE
Confidence 9987 5799999987 4434443321 1246899999988899999998 53 5888888864433333
Q ss_pred eeC--------------C---------------CCCceEEEEecCCCEEEEEeCCCCeEEEEeCC----CC--Ce-----
Q psy13635 259 VKD--------------R---------------LGWPNGITLDVDNEKLYWCDAKTDKIEMIDFD----GN--NR----- 298 (357)
Q Consensus 259 ~~~--------------~---------------l~~P~giaid~~~~~lY~~d~~~~~I~~~~~d----G~--~~----- 298 (357)
... + ...|+||++++++..||+++...+++++++.+ +. ..
T Consensus 161 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 240 (343)
T 2qe8_A 161 LQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSK 240 (343)
T ss_dssp CTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTT
T ss_pred ecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcc
Confidence 211 0 12479999998777999999988899999742 21 00
Q ss_pred EEEecCCCCceEEEEEE-CCEEEEEeCCCCeEEEEeCccCceeEEEecc-cCCceeeee
Q psy13635 299 RELINENLPHVFGISLL-GDYVYWTDWQRRSIDRVNKITGNDREVIIER-SCTGVTRRR 355 (357)
Q Consensus 299 ~~i~~~~~~~p~gia~~-~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~-l~~p~~i~~ 355 (357)
.... .....|.||+++ +|.+|++++..++|.+++..+|+...+.... +..|.++..
T Consensus 241 ~~~~-g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~ 298 (343)
T 2qe8_A 241 IERY-SEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNF 298 (343)
T ss_dssp CEEE-EECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEE
T ss_pred eEec-ccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEE
Confidence 0111 123479999998 6899999999999999998557654444332 667777653
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.67 E-value=8.7e-14 Score=127.32 Aligned_cols=217 Identities=13% Similarity=0.174 Sum_probs=159.6
Q ss_pred EEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCC
Q psy13635 109 HNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVAR 188 (357)
Q Consensus 109 ~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~ 188 (357)
...+..+...|+++++|+ .++|||++...+.|.+++.++.....+.... ...|.++++|+ ++
T Consensus 37 ~~~~~~~~~~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~----------------~~~~~~i~~~~-dg 98 (333)
T 2dg1_A 37 WLEISKKGLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVSH----------------KANPAAIKIHK-DG 98 (333)
T ss_dssp EEEEESSCCCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECS----------------SSSEEEEEECT-TS
T ss_pred eEEEeccCccccCcEECC-CCCEEEEECCCCEEEEEeCCCCcEEEEeeCC----------------CCCcceEEECC-CC
Confidence 445556677899999995 6779999998999999998876554443211 13688999995 56
Q ss_pred eEEEEeCCC----CeEEEEEcCCCceEEEec--CCCCCceEEEEeCCCCEEEEEeCCC----CCCeEEEEecCCCceEEE
Q psy13635 189 NLYWTDTGT----DRIEVCRLEGTHRKVLVN--TDLVEPRAITLSPAHGYLFWSDWNE----KRPKIERSLLNGGERVLL 258 (357)
Q Consensus 189 ~lY~td~~~----~~I~~~~~~g~~~~~~~~--~~~~~P~giavd~~~g~Ly~~d~~~----~~~~I~~~~~dg~~~~~~ 258 (357)
+||++.... +.|.++++++.....+.. .....|+++++|+. |++|+++... ....|++++.++.....+
T Consensus 99 ~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~-g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~ 177 (333)
T 2dg1_A 99 RLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSK-GGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI 177 (333)
T ss_dssp CEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTT-SCEEEEECCCBTTBCCEEEEEECTTSCCEEEE
T ss_pred cEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCC-CCEEEEeccccccCCCceEEEEeCCCCEEEEe
Confidence 899998766 689999998876653432 23457999999985 8999998742 025899999887655544
Q ss_pred eeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCC--CCCeEEE----e-c-CCCCceEEEEEE-CCEEEEEeCCCCeE
Q psy13635 259 VKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFD--GNNRREL----I-N-ENLPHVFGISLL-GDYVYWTDWQRRSI 329 (357)
Q Consensus 259 ~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~d--G~~~~~i----~-~-~~~~~p~gia~~-~~~ly~td~~~~~I 329 (357)
. ..+..|+++++++.+..||+++...+.|++++.+ |.....+ . . .....|.+++++ +|.+|+++...+.|
T Consensus 178 ~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v 256 (333)
T 2dg1_A 178 I-QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRV 256 (333)
T ss_dssp E-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEE
T ss_pred e-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence 3 3456799999997667899999888899999984 4433211 1 1 122479999998 58899999888899
Q ss_pred EEEeCccCceeEEEecc
Q psy13635 330 DRVNKITGNDREVIIER 346 (357)
Q Consensus 330 ~~~~~~~g~~~~~i~~~ 346 (357)
.++++ +|+....+...
T Consensus 257 ~~~d~-~g~~~~~~~~~ 272 (333)
T 2dg1_A 257 LVFNK-RGYPIGQILIP 272 (333)
T ss_dssp EEECT-TSCEEEEEECT
T ss_pred EEECC-CCCEEEEEEcC
Confidence 99998 67776666543
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-13 Score=120.59 Aligned_cols=200 Identities=12% Similarity=0.110 Sum_probs=147.8
Q ss_pred CCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC
Q psy13635 117 ITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG 196 (357)
Q Consensus 117 ~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~ 196 (357)
.++.||++|+.++.||.+....++|.+++++|...+.+.. .++..+.||+++ .++.+++++..
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l----------------~g~~D~EGIa~~-~~g~~~vs~E~ 89 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPL----------------DFVKDLETIEYI-GDNQFVISDER 89 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEEC----------------SSCSSEEEEEEC-STTEEEEEETT
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEec----------------CCCCChHHeEEe-CCCEEEEEECC
Confidence 6799999999889999866668999999999887666532 234579999998 56788889988
Q ss_pred CCeEEEEEcCCCce-EE--EecCCC-CCc-----eEEEEeCCCCEEEEEeCCCCCCeEEEEe--cCCCceEEEe------
Q psy13635 197 TDRIEVCRLEGTHR-KV--LVNTDL-VEP-----RAITLSPAHGYLFWSDWNEKRPKIERSL--LNGGERVLLV------ 259 (357)
Q Consensus 197 ~~~I~~~~~~g~~~-~~--~~~~~~-~~P-----~giavd~~~g~Ly~~d~~~~~~~I~~~~--~dg~~~~~~~------ 259 (357)
.+++.++..+.... .. ...-.+ ..| .|||+||.+++||.+..... ..|+..+ +.+.....+-
T Consensus 90 ~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p-~~i~~~~g~~~~~~l~i~~~~~~~~ 168 (255)
T 3qqz_A 90 DYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNP-IEVYKVNGLLSSNELHISKDKALQR 168 (255)
T ss_dssp TTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSS-EEEEEEESTTCSSCCEEEECHHHHH
T ss_pred CCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCC-ceEEEEcccccCCceeeecchhhcc
Confidence 88888887654321 11 111111 234 89999999889999987743 4788887 1222223321
Q ss_pred eCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecC--------CCCceEEEEEE-CCEEEEEeCCCCeEE
Q psy13635 260 KDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINE--------NLPHVFGISLL-GDYVYWTDWQRRSID 330 (357)
Q Consensus 260 ~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~--------~~~~p~gia~~-~~~ly~td~~~~~I~ 330 (357)
...+..+.+|++|+..+++|+....++.+..++.+|.-+..+.-. .+.+|.||+++ +|+||+++-. +.+|
T Consensus 169 ~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~-n~~y 247 (255)
T 3qqz_A 169 QFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEP-NRFY 247 (255)
T ss_dssp TCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETT-TEEE
T ss_pred ccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCC-ceEE
Confidence 113567899999999999999999999999999999844333221 25799999999 5899999644 6999
Q ss_pred EEeCc
Q psy13635 331 RVNKI 335 (357)
Q Consensus 331 ~~~~~ 335 (357)
++.+.
T Consensus 248 ~f~~~ 252 (255)
T 3qqz_A 248 RFTPQ 252 (255)
T ss_dssp EEEC-
T ss_pred EEEec
Confidence 99874
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-12 Score=115.65 Aligned_cols=211 Identities=10% Similarity=0.085 Sum_probs=149.3
Q ss_pred CCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCC
Q psy13635 70 LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGK 149 (357)
Q Consensus 70 ~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~ 149 (357)
...+.|+++++.+++||......+.|++++++|.. ...+...+...++||+++. .+.+++++...+++.++..+..
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v---~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~~~ 101 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDL---IRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISLTPN 101 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCE---EEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEECTT
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCE---EEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEcCCC
Confidence 35799999999999999866668899999999653 2444456778999999994 6678889888899998876544
Q ss_pred ce-EEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCC-eEEEEE--cCCCceEEEec------CCCC
Q psy13635 150 KR-KVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTD-RIEVCR--LEGTHRKVLVN------TDLV 219 (357)
Q Consensus 150 ~~-~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~-~I~~~~--~~g~~~~~~~~------~~~~ 219 (357)
.. ..+-...+.- + .........|||+|+.+++||++..... .|+..+ +.+....++.. ..+.
T Consensus 102 ~~i~~~~~~~~~~--~------~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~ 173 (255)
T 3qqz_A 102 SEVKILKKIKIPL--Q------ESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLD 173 (255)
T ss_dssp CCEEEEEEEECCC--S------SCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSS
T ss_pred Ceeeeeeeecccc--c------cccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccC
Confidence 32 1111111100 0 0112234699999999999999887655 788876 22222233211 1356
Q ss_pred CceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeC--------CCCCceEEEEecCCCEEEEEeCCCCeEEEE
Q psy13635 220 EPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKD--------RLGWPNGITLDVDNEKLYWCDAKTDKIEMI 291 (357)
Q Consensus 220 ~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~--------~l~~P~giaid~~~~~lY~~d~~~~~I~~~ 291 (357)
.+.++++||.+|+||+..... ..+..++.+|.....+--. .+.+|.|||+| .+|+||++... +.++++
T Consensus 174 d~S~l~~dp~tg~lliLS~~s--~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d-~~G~lyIvsE~-n~~y~f 249 (255)
T 3qqz_A 174 DVSGAEFNQQKNTLLVLSHES--RALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMD-ASGNIYIVSEP-NRFYRF 249 (255)
T ss_dssp CCCEEEEETTTTEEEEEETTT--TEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEEC-TTCCEEEEETT-TEEEEE
T ss_pred CceeEEEcCCCCeEEEEECCC--CeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEEC-CCCCEEEEcCC-ceEEEE
Confidence 799999999999999998875 5999999999854443222 25689999999 57889999765 599999
Q ss_pred eCCCC
Q psy13635 292 DFDGN 296 (357)
Q Consensus 292 ~~dG~ 296 (357)
..+++
T Consensus 250 ~~~~~ 254 (255)
T 3qqz_A 250 TPQSS 254 (255)
T ss_dssp EC---
T ss_pred EecCC
Confidence 87543
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.9e-14 Score=132.61 Aligned_cols=233 Identities=13% Similarity=0.091 Sum_probs=156.8
Q ss_pred EEEEeCCcCCceeEEEEcCCCe-EEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCC-
Q psy13635 109 HNVITNGLITPDGLAIDWLTEK-LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWV- 186 (357)
Q Consensus 109 ~~~~~~~~~~p~glavd~~~~~-ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~- 186 (357)
.+++..++..|.+|++++ .++ ||+++. .++|.+++.+|...+.+. ++ |. + .......|.||++++.
T Consensus 10 ~~~va~~l~~P~~i~~~p-dG~~l~V~e~-~G~i~~~~~~g~~~~~~~--~~--~~-v-----~~~g~~g~~gia~~pdf 77 (353)
T 2g8s_A 10 VEVLQDKLDHPWALAFLP-DNHGMLITLR-GGELRHWQAGKGLSAPLS--GV--PD-V-----WAHGQGGLLDVVLAPDF 77 (353)
T ss_dssp EEEEEEEESSEEEEEECS-TTCCEEEEET-TTEEEEEETTTEECCCCB--SC--CC-C-----CCSTTCSEEEEEECTTH
T ss_pred EEEEECCCCCcEEEEEcC-CCCEEEEEeC-CceEEEEeCCCceeeEec--CC--cc-c-----ccCCCCCceeEEECCCC
Confidence 556667899999999997 556 999997 489999988775332211 00 00 0 0123346899999986
Q ss_pred --CCeEEEEeCC-------CCeEEEEEcCCC-----ceEEEecC------CCCCceEEEEeCCCCEEEEEeCCCC-----
Q psy13635 187 --ARNLYWTDTG-------TDRIEVCRLEGT-----HRKVLVNT------DLVEPRAITLSPAHGYLFWSDWNEK----- 241 (357)
Q Consensus 187 --~~~lY~td~~-------~~~I~~~~~~g~-----~~~~~~~~------~~~~P~giavd~~~g~Ly~~d~~~~----- 241 (357)
++.||+++.. ..+|.+++.++. ..++++.. ....|.+|+++|. |.||++.....
T Consensus 78 ~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pd-G~Lyv~~Gd~~~~~~~ 156 (353)
T 2g8s_A 78 AQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGK-GYLFIALGENNQRPTA 156 (353)
T ss_dssp HHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSS-SEEEEEECCTTCGGGG
T ss_pred CCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCC-CcEEEEECCCCCCCcc
Confidence 8999999764 358999887643 23344321 2345889999985 89999974321
Q ss_pred ------CCeEEEEecCCCc------------eEEEeeCCCCCceEEEEecCCCEEEEEeCCCC---eEEEEeCCCCC---
Q psy13635 242 ------RPKIERSLLNGGE------------RVLLVKDRLGWPNGITLDVDNEKLYWCDAKTD---KIEMIDFDGNN--- 297 (357)
Q Consensus 242 ------~~~I~~~~~dg~~------------~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~---~I~~~~~dG~~--- 297 (357)
.++|.|++.+|+. ..+++..++.+|.|+++|+.+++||++|.+.+ .|.++...+.-
T Consensus 157 q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp 236 (353)
T 2g8s_A 157 QDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWP 236 (353)
T ss_dssp GCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTT
T ss_pred CCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCC
Confidence 3689999999862 34455678899999999976899999998753 55555432210
Q ss_pred --------------------eEEEe-----cCCCCceEEEEEE--------CCEEEEEeCCCCeEEEEeCccCcee--EE
Q psy13635 298 --------------------RRELI-----NENLPHVFGISLL--------GDYVYWTDWQRRSIDRVNKITGNDR--EV 342 (357)
Q Consensus 298 --------------------~~~i~-----~~~~~~p~gia~~--------~~~ly~td~~~~~I~~~~~~~g~~~--~~ 342 (357)
..... ......|.|+++. .|.+|++++..++|.+++..+++.. +.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~ 316 (353)
T 2g8s_A 237 LATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR 316 (353)
T ss_dssp TBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE
T ss_pred CccCCCCCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE
Confidence 00000 0112368899996 3899999999999999998554422 22
Q ss_pred Eecc-cCCceeee
Q psy13635 343 IIER-SCTGVTRR 354 (357)
Q Consensus 343 i~~~-l~~p~~i~ 354 (357)
+..+ ...|.++.
T Consensus 317 ~~~~~~~rp~~v~ 329 (353)
T 2g8s_A 317 ILTDRGQRIRDVR 329 (353)
T ss_dssp ESGGGCCCEEEEE
T ss_pred cccCCCCceeEEE
Confidence 3333 34677765
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-13 Score=130.51 Aligned_cols=285 Identities=11% Similarity=0.031 Sum_probs=184.7
Q ss_pred CeEEEEEeC------CcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeC---------CCCeEEEEEcCCCCc
Q psy13635 41 AQMLLFATS------KDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDH---------GTEMISCCTFDGNNV 105 (357)
Q Consensus 41 ~~~l~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~---------~~~~I~~~~~~g~~~ 105 (357)
...+|+++. +.|..+|+.. .+....++....| ++++++++.+||+++. .++.|..++......
T Consensus 84 ~~~vyV~n~~~~~~~~~VsVID~~t-~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v 161 (426)
T 3c75_H 84 ARRVYIQDPAHFAAITQQFVIDGST-GRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP 161 (426)
T ss_dssp TTEEEEEECTTTCSSEEEEEEETTT-TEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE
T ss_pred CCEEEEECCCcCCCCCeEEEEECCC-CEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE
Confidence 346788876 6799999976 3444444444578 9999999999999985 356789998877641
Q ss_pred ceeEEEEeC---C---cCCceeEEEEcCCCeEEEEeCC-CCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCC
Q psy13635 106 GSKHNVITN---G---LITPDGLAIDWLTEKLYWTDSE-TNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHP 178 (357)
Q Consensus 106 ~~~~~~~~~---~---~~~p~glavd~~~~~ly~td~~-~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p 178 (357)
..++... . ...|.++++++.++.||+++.. .+.|.++++.......-+.. |
T Consensus 162 --v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v--------------------~ 219 (426)
T 3c75_H 162 --IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV--------------------P 219 (426)
T ss_dssp --EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC--------------------C
T ss_pred --EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc--------------------C
Confidence 2233222 1 2579999999999999999975 78999999876543222211 1
Q ss_pred ceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEe---cCCCCCce--EEEEeCCCCEEEEEeCCCCCCeEEEEecCCC
Q psy13635 179 DGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLV---NTDLVEPR--AITLSPAHGYLFWSDWNEKRPKIERSLLNGG 253 (357)
Q Consensus 179 ~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~---~~~~~~P~--giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~ 253 (357)
.+..+.+.+++.|++....+++..++.......... ..--..|. .+++++..+++|++... +.++.++..+.
T Consensus 220 g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~---g~V~ViD~~~~ 296 (426)
T 3c75_H 220 DCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYT---GKIFQADLTAE 296 (426)
T ss_dssp SEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTT---SEEEEEEECSS
T ss_pred CceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCC---CcEEEEeccCC
Confidence 112222233455555555555555555322211110 01112342 24557777788887654 58999998765
Q ss_pred ceEEEeeCC---------CCCceE---EEEecCCCEEEEEeC---------CCCeEEEEeCCCCCeEEEecCCCCceEEE
Q psy13635 254 ERVLLVKDR---------LGWPNG---ITLDVDNEKLYWCDA---------KTDKIEMIDFDGNNRRELINENLPHVFGI 312 (357)
Q Consensus 254 ~~~~~~~~~---------l~~P~g---iaid~~~~~lY~~d~---------~~~~I~~~~~dG~~~~~i~~~~~~~p~gi 312 (357)
....+-.-. -..|.| +++++.+++||+++. ..+.|..+|........-+. ....|.+|
T Consensus 297 ~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~-vg~~P~gi 375 (426)
T 3c75_H 297 GATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIE-LGHEIDSI 375 (426)
T ss_dssp CEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEE
T ss_pred ceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEE-CCCCcCeE
Confidence 543321100 013544 899999999999974 23579999987655433332 12369999
Q ss_pred EEE--CC-EEEEEeCCCCeEEEEeCccCceeEEEecccCCceee
Q psy13635 313 SLL--GD-YVYWTDWQRRSIDRVNKITGNDREVIIERSCTGVTR 353 (357)
Q Consensus 313 a~~--~~-~ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~i 353 (357)
++. +. .+|++++.++.|..+|..+++....|..-...|..+
T Consensus 376 a~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~~vG~~P~~i 419 (426)
T 3c75_H 376 NVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVDQLGRGPQII 419 (426)
T ss_dssp EECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCSSSCCEE
T ss_pred EEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEecCCCCCCcEE
Confidence 997 45 899999999999999999999998884444566554
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.63 E-value=7.4e-12 Score=117.19 Aligned_cols=285 Identities=8% Similarity=-0.025 Sum_probs=186.4
Q ss_pred CeEEEEEeC--C----cEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeC---------CCCeEEEEEcCCCCc
Q psy13635 41 AQMLLFATS--K----DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDH---------GTEMISCCTFDGNNV 105 (357)
Q Consensus 41 ~~~l~~~~~--~----~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~---------~~~~I~~~~~~g~~~ 105 (357)
..++|.++. . .|.++|.... +....++.-..| ++++++++..+|+++. .++.|..++......
T Consensus 32 ~~~~yv~~~~~~~~~~~v~v~D~~t~-~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~ 109 (373)
T 2mad_H 32 GRRSYINLPAHHSAIIQQWVLDAGSG-SILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP 109 (373)
T ss_pred CCEEEEeCCcccCCccEEEEEECCCC-eEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcE
Confidence 355666663 2 6788998763 333334444567 9999999999999984 356788888875431
Q ss_pred ceeEEEEeC---C---cCCceeEEEEcCCCeEEEEeCC-CCEEEEEEcCCCceEEE-EecCCCCcceeeeeccCcccccC
Q psy13635 106 GSKHNVITN---G---LITPDGLAIDWLTEKLYWTDSE-TNKLEVSSLDGKKRKVL-YWEDIDQPRAIASYKLPTIEVEH 177 (357)
Q Consensus 106 ~~~~~~~~~---~---~~~p~glavd~~~~~ly~td~~-~~~I~~~~~~g~~~~~~-~~~~~~~p~~i~~~~~~~~~~~~ 177 (357)
..++... . ...|.++++++.++.||+++.. .++|.+++ ........ + ..
T Consensus 110 --~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i--------------------~~ 166 (373)
T 2mad_H 110 --IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLL--------------------SS 166 (373)
T ss_pred --EEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEc--------------------CC
Confidence 1222111 0 2469999999999999999865 68899998 65433211 1 13
Q ss_pred CceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEec-C--CCCCce--EEEEeCCCCEEEEEeCCCCCCeEEEEecCC
Q psy13635 178 PDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVN-T--DLVEPR--AITLSPAHGYLFWSDWNEKRPKIERSLLNG 252 (357)
Q Consensus 178 p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~-~--~~~~P~--giavd~~~g~Ly~~d~~~~~~~I~~~~~dg 252 (357)
|.++.+.+..++.|++....+++..++.+|+....... . ....|. ..++.+..+.+||.... +.+..+++.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~---~~v~vid~~~ 243 (373)
T 2mad_H 167 PTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYS---GKILQADISA 243 (373)
T ss_pred CceEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCC---ceEEEEeccC
Confidence 44455666677888888888888888884443322110 0 112231 22345556777777643 5888888876
Q ss_pred CceEEEee---------CCCCCceE---EEEecCCCEEEEEeC---------CCCeEEEEeCCCCCeEEEecCCCCceEE
Q psy13635 253 GERVLLVK---------DRLGWPNG---ITLDVDNEKLYWCDA---------KTDKIEMIDFDGNNRRELINENLPHVFG 311 (357)
Q Consensus 253 ~~~~~~~~---------~~l~~P~g---iaid~~~~~lY~~d~---------~~~~I~~~~~dG~~~~~i~~~~~~~p~g 311 (357)
.....+-. .....|.| +++++.+++||++.. ..+.|+.+|........-+. ....|.+
T Consensus 244 ~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~~p~~ 322 (373)
T 2mad_H 244 AGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDA 322 (373)
T ss_pred CcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCCCcCe
Confidence 54332211 01123555 889988999999864 24689999987655433332 2346999
Q ss_pred EEEE--CC-EEEEEeCCCCeEEEEeCccCceeEEEecccCCceeee
Q psy13635 312 ISLL--GD-YVYWTDWQRRSIDRVNKITGNDREVIIERSCTGVTRR 354 (357)
Q Consensus 312 ia~~--~~-~ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~i~ 354 (357)
+++. +. .+|.+++..+.|..+|..+++....+..-...|.+|.
T Consensus 323 i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i~~vG~~P~~~~ 368 (373)
T 2mad_H 323 ISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLS 368 (373)
T ss_pred EEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeeecCCCCCCcEEE
Confidence 9986 45 6888888889999999989998888665557788775
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.9e-13 Score=124.31 Aligned_cols=220 Identities=14% Similarity=0.139 Sum_probs=157.3
Q ss_pred EEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCC
Q psy13635 109 HNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVAR 188 (357)
Q Consensus 109 ~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~ 188 (357)
+.+.......++|+++|+.++.+||+|...++|.+++.++.....+.. . ..|.++++++ .+
T Consensus 41 ~~~~~~~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~-~-----------------~~v~~i~~~~-dg 101 (326)
T 2ghs_A 41 RVLDETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHAL-P-----------------FMGSALAKIS-DS 101 (326)
T ss_dssp EEEECSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEEC-S-----------------SCEEEEEEEE-TT
T ss_pred EEeeccCCCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEC-C-----------------CcceEEEEeC-CC
Confidence 334444566789999998889999999999999999998765543321 1 2578888885 56
Q ss_pred eEEEEeCCCCeEEEEEcCCCceEEEecC----CCCCceEEEEeCCCCEEEEEeCCC----CCCeEEEEecCCCceEEEee
Q psy13635 189 NLYWTDTGTDRIEVCRLEGTHRKVLVNT----DLVEPRAITLSPAHGYLFWSDWNE----KRPKIERSLLNGGERVLLVK 260 (357)
Q Consensus 189 ~lY~td~~~~~I~~~~~~g~~~~~~~~~----~~~~P~giavd~~~g~Ly~~d~~~----~~~~I~~~~~dg~~~~~~~~ 260 (357)
++|++.. +.|.++++++...+.+... ....|+++++|+. |++|+++... ..+.|++++ +|. ...+ .
T Consensus 102 ~l~v~~~--~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~-G~l~v~~~~~~~~~~~~~l~~~~-~g~-~~~~-~ 175 (326)
T 2ghs_A 102 KQLIASD--DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPS-GALWIGTMGRKAETGAGSIYHVA-KGK-VTKL-F 175 (326)
T ss_dssp EEEEEET--TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTT-SCEEEEEEETTCCTTCEEEEEEE-TTE-EEEE-E
T ss_pred eEEEEEC--CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCC-CCEEEEeCCCcCCCCceEEEEEe-CCc-EEEe-e
Confidence 7888763 4699999875555444332 1246899999985 7899987531 125899998 543 2223 2
Q ss_pred CCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCC---C-C--CeEEEec--CCCCceEEEEEE-CCEEEEEeCCCCeEEE
Q psy13635 261 DRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFD---G-N--NRRELIN--ENLPHVFGISLL-GDYVYWTDWQRRSIDR 331 (357)
Q Consensus 261 ~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~d---G-~--~~~~i~~--~~~~~p~gia~~-~~~ly~td~~~~~I~~ 331 (357)
.....|+++++++++..||+++...+.|++++.+ | . ..+.+.. .....|.|++++ +|.+|++.+..+.|.+
T Consensus 176 ~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~ 255 (326)
T 2ghs_A 176 ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDR 255 (326)
T ss_dssp EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEE
T ss_pred CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEE
Confidence 3456799999998777899999988999999975 4 2 1222321 234579999998 5899999988889999
Q ss_pred EeCccCceeEEEecccCCceeee
Q psy13635 332 VNKITGNDREVIIERSCTGVTRR 354 (357)
Q Consensus 332 ~~~~~g~~~~~i~~~l~~p~~i~ 354 (357)
+++ +|+....+..+...|..+.
T Consensus 256 ~d~-~g~~~~~i~~~~~~~~~~a 277 (326)
T 2ghs_A 256 YDT-DGNHIARYEVPGKQTTCPA 277 (326)
T ss_dssp ECT-TCCEEEEEECSCSBEEEEE
T ss_pred ECC-CCCEEEEEECCCCCcEEEE
Confidence 998 7887776665555565554
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.4e-12 Score=118.33 Aligned_cols=262 Identities=10% Similarity=0.038 Sum_probs=167.3
Q ss_pred eecCCCCeEEEEEeC----CcEEEEEcCCCCcceEe---ccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcce
Q psy13635 35 LSHHVAAQMLLFATS----KDIRIANLSRPLKPVTI---IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGS 107 (357)
Q Consensus 35 ~~~~~~~~~l~~~~~----~~i~~~~~~~~~~~~~~---~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~ 107 (357)
++.++... |++++. ..|+.++++++ ..+.+ ......|.++++++++..||+++..++.|...+++......
T Consensus 45 ~a~spdg~-l~~~~~~~~~~~v~~~~~~~g-~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~ 122 (347)
T 3hfq_A 45 LALSAKDC-LYSVDKEDDEGGIAAWQIDGQ-TAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALT 122 (347)
T ss_dssp EEECTTCE-EEEEEEETTEEEEEEEEEETT-EEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEE
T ss_pred EEEccCCe-EEEEEecCCCceEEEEEecCC-cEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCee
Confidence 34444444 666654 47888888653 22222 23566889999999999999999888888877775322111
Q ss_pred eEEEEeC-C--------cCCceeEEEEcCCCeEEEEeCCCCEEEEEEcC-CCceEEEEecCCCCcceeeeeccCcccccC
Q psy13635 108 KHNVITN-G--------LITPDGLAIDWLTEKLYWTDSETNKLEVSSLD-GKKRKVLYWEDIDQPRAIASYKLPTIEVEH 177 (357)
Q Consensus 108 ~~~~~~~-~--------~~~p~glavd~~~~~ly~td~~~~~I~~~~~~-g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~ 177 (357)
....... + ...|.++++++.++ +|+++...++|.+++++ ......+.... ......
T Consensus 123 ~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-------------~~~g~~ 188 (347)
T 3hfq_A 123 LTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLT-------------MEAGFG 188 (347)
T ss_dssp EEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEE-------------CCTTCC
T ss_pred ecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEE-------------cCCCCC
Confidence 1112211 1 12477899998666 99999999999999887 22222221100 111236
Q ss_pred CceEEEeCCCCeEEEEeCCCCeEEEEEcCC--CceEE---EecCC-----CCCceEEEEeCCCCEEEEEeCCCCCCeEEE
Q psy13635 178 PDGVAVDWVARNLYWTDTGTDRIEVCRLEG--THRKV---LVNTD-----LVEPRAITLSPAHGYLFWSDWNEKRPKIER 247 (357)
Q Consensus 178 p~glavD~~~~~lY~td~~~~~I~~~~~~g--~~~~~---~~~~~-----~~~P~giavd~~~g~Ly~~d~~~~~~~I~~ 247 (357)
|.++++++.++.||+++...+.|.+.+++. ..... +.... ...|.+++++|.+.+||+++... +.|..
T Consensus 189 p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~--~~v~v 266 (347)
T 3hfq_A 189 PRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGY--NTLAV 266 (347)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETT--TEEEE
T ss_pred CceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCC--CEEEE
Confidence 888999988888999999888888887763 22211 11111 14589999999877899998874 47777
Q ss_pred EecCCC-ceEE--EeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCC--CCCeEEEec-CCCCceEEEEE
Q psy13635 248 SLLNGG-ERVL--LVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFD--GNNRRELIN-ENLPHVFGISL 314 (357)
Q Consensus 248 ~~~dg~-~~~~--~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~d--G~~~~~i~~-~~~~~p~gia~ 314 (357)
.+++.. .... .+......|.++++++++..||+++...+.|..++.+ +.....+.. ..++.|.-+..
T Consensus 267 ~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~~~~~~~~p~p~~~~~ 339 (347)
T 3hfq_A 267 FAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSLLQKDVTVPEGVCVRF 339 (347)
T ss_dssp EEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEECTTEEEEEE
T ss_pred EEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEecccceecCCCcEEEe
Confidence 776522 1222 2223345799999998888899999988888777443 333333322 13455555443
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.4e-13 Score=123.35 Aligned_cols=233 Identities=15% Similarity=0.089 Sum_probs=161.3
Q ss_pred eEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEec-CCCCcceeeeeccCcccccCCceEEEeCC
Q psy13635 108 KHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWE-DIDQPRAIASYKLPTIEVEHPDGVAVDWV 186 (357)
Q Consensus 108 ~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~-~~~~p~~i~~~~~~~~~~~~p~glavD~~ 186 (357)
..+++..++..|.+|++.+ ++.||+++...++|.+++.++...+.+... .. .......|.|||+++.
T Consensus 23 ~~~~va~gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v-----------~~~g~~GllGia~~Pd 90 (347)
T 3das_A 23 VLRTVATGLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGV-----------SPSGEGGLLGIALSPD 90 (347)
T ss_dssp EEEEEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTC-----------CCBTTBSEEEEEECTT
T ss_pred eeEEeecCCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCce-----------eecCCCCceeeEeccc
Confidence 4668889999999999996 678999999889999998764443333211 10 1234568999999984
Q ss_pred ---CCeEEEEeC--CCCeEEEEEcCCC--------ceEEEec----CCCCCceEEEEeCCCCEEEEEeCC----------
Q psy13635 187 ---ARNLYWTDT--GTDRIEVCRLEGT--------HRKVLVN----TDLVEPRAITLSPAHGYLFWSDWN---------- 239 (357)
Q Consensus 187 ---~~~lY~td~--~~~~I~~~~~~g~--------~~~~~~~----~~~~~P~giavd~~~g~Ly~~d~~---------- 239 (357)
++.||++.. ..++|.++.+++. ..++++. .....+..|+++|+ |.||++.-.
T Consensus 91 f~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpD-G~Lyvt~Gd~~~~~~~qd~ 169 (347)
T 3das_A 91 YASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPD-KMLYAGTGESGDTGLSQDR 169 (347)
T ss_dssp HHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTT-SCEEEECBCTTCGGGTTCT
T ss_pred cccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCC-CCEEEEECCCCCCccccCC
Confidence 789998753 4569999988762 1333332 12345778999985 899999531
Q ss_pred -CCCCeEEEEecCCCc-------eEEEeeCCCCCceEEEEecCCCEEEEEeCCCC---eEEEEeCCCCC-------e---
Q psy13635 240 -EKRPKIERSLLNGGE-------RVLLVKDRLGWPNGITLDVDNEKLYWCDAKTD---KIEMIDFDGNN-------R--- 298 (357)
Q Consensus 240 -~~~~~I~~~~~dg~~-------~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~---~I~~~~~dG~~-------~--- 298 (357)
...++|.|++.+|+. ..+++..++.+|.|+++|+ ++.||++|.+.. .|.++...+.- .
T Consensus 170 ~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp-~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~ 248 (347)
T 3das_A 170 KSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDD-KQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGG 248 (347)
T ss_dssp TCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECT-TCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCC
T ss_pred CCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECC-CCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCC
Confidence 114799999999871 1346667899999999997 799999998653 56666432210 0
Q ss_pred ------EEEecCCCCceEEEEEECCEEEEEeCCCCeEEEEeCccCc---eeEEEecc-cCCceeee
Q psy13635 299 ------RELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGN---DREVIIER-SCTGVTRR 354 (357)
Q Consensus 299 ------~~i~~~~~~~p~gia~~~~~ly~td~~~~~I~~~~~~~g~---~~~~i~~~-l~~p~~i~ 354 (357)
..........|.||++.++.+|.++....+|+++....++ ..+.++.+ ...|.+|.
T Consensus 249 ~~~~~P~~~~~~~~~ap~G~~~~~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~ 314 (347)
T 3das_A 249 SGFHDPVAQWSTDEASPSGIAYAEGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVA 314 (347)
T ss_dssp TTCCCCSEEECTTTCCEEEEEEETTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEE
T ss_pred ccccCCcEecCCCCCCCcceEEEcCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEE
Confidence 0000001236899999999999999999999998874432 22444443 45677664
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-13 Score=131.86 Aligned_cols=253 Identities=13% Similarity=0.115 Sum_probs=169.6
Q ss_pred CcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeC------CcCCceeEEEEcC---CCeE
Q psy13635 61 LKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN------GLITPDGLAIDWL---TEKL 131 (357)
Q Consensus 61 ~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~------~~~~p~glavd~~---~~~l 131 (357)
-+.+.+.+.+..|++|++++ +++||+++...++|++++.++.. ......+.. +...+.|||+++. ++.|
T Consensus 17 f~~~~~a~~l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~-~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~l 94 (454)
T 1cru_A 17 FDKKVILSNLNKPHALLWGP-DNQIWLTERATGKILRVNPESGS-VKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYI 94 (454)
T ss_dssp SCEEEEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCC-EEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEE
T ss_pred eEEEEEECCCCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCc-EeEEecCCccccccCCCCceeEEEECCCcCcCCEE
Confidence 45566677899999999998 57899999988889999875332 111112222 2345669999986 8999
Q ss_pred EEEeCC------------CCEEEEEEcCCC-----ceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEe
Q psy13635 132 YWTDSE------------TNKLEVSSLDGK-----KRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTD 194 (357)
Q Consensus 132 y~td~~------------~~~I~~~~~~g~-----~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td 194 (357)
|+++.. ..+|.|+++++. ..++++.. +|....+.+.+|++++ .|+||++.
T Consensus 95 Yv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~------------~p~~~~H~~~~l~f~p-DG~Lyv~~ 161 (454)
T 1cru_A 95 YISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAG------------LPSSKDHQSGRLVIGP-DQKIYYTI 161 (454)
T ss_dssp EEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEE------------ECCCSSCCEEEEEECT-TSCEEEEE
T ss_pred EEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEc------------CCCCCCCCCCeEeECC-CCeEEEEE
Confidence 999853 358999887542 12333321 1233457799999996 67899984
Q ss_pred CC--------------------------------CCeEEEEEcCCC-----------ceEEEecCCCCCceEEEEeCCCC
Q psy13635 195 TG--------------------------------TDRIEVCRLEGT-----------HRKVLVNTDLVEPRAITLSPAHG 231 (357)
Q Consensus 195 ~~--------------------------------~~~I~~~~~~g~-----------~~~~~~~~~~~~P~giavd~~~g 231 (357)
.. .++|.|+++||+ ..++ ...++.+|.|+++|+ +|
T Consensus 162 Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei-~a~G~RNp~gla~dp-~G 239 (454)
T 1cru_A 162 GDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHI-YTLGHRNPQGLAFTP-NG 239 (454)
T ss_dssp CCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSE-EEBCCSEEEEEEECT-TS
T ss_pred CCCCCCCccccccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceE-EEECCCCcceEEECC-CC
Confidence 32 358999999997 3343 345789999999999 69
Q ss_pred EEEEEeCCCC-CCeEEEEec---------CCC---------------------------c------------------eE
Q psy13635 232 YLFWSDWNEK-RPKIERSLL---------NGG---------------------------E------------------RV 256 (357)
Q Consensus 232 ~Ly~~d~~~~-~~~I~~~~~---------dg~---------------------------~------------------~~ 256 (357)
.||+++.+.. .-.|..+.. .|. . ..
T Consensus 240 ~L~~~d~g~~~~dein~i~~G~nYGWP~~~G~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~p~~~~~~~~~~~~~~ 319 (454)
T 1cru_A 240 KLLQSEQGPNSDDEINLIVKGGNYGWPNVAGYKDDSGYAYANYSAAANKSIKDLAQNGVKVAAGVPVTKESEWTGKNFVP 319 (454)
T ss_dssp CEEEEEECSSSCEEEEECCTTCBCCTTTCSSSSSCSSCCEECGGGSSCTTCCCCCSTTSSCCTTCCEECGGGCCCSSBCC
T ss_pred CEEEEecCCCCCeEEEEecCCCCCCCCceecCcccCccccccccccccccccccccCCcccCccccccccccccCCCcCC
Confidence 9999997642 012222211 010 0 00
Q ss_pred EEee----------------------CCCCCceEEEEecC--------CCEEEEEeCCCCeEEEEeCCCCC--e----EE
Q psy13635 257 LLVK----------------------DRLGWPNGITLDVD--------NEKLYWCDAKTDKIEMIDFDGNN--R----RE 300 (357)
Q Consensus 257 ~~~~----------------------~~l~~P~giaid~~--------~~~lY~~d~~~~~I~~~~~dG~~--~----~~ 300 (357)
.++. .....|.|+++... .+.||+++...++|.++.+++.+ . ..
T Consensus 320 P~~~~~~~~~~~~~~~~~~G~~~~~~~~~~ap~G~~fy~g~~~~~~~~~g~lfv~~~~~~~i~~v~l~~~g~~~~~~~~~ 399 (454)
T 1cru_A 320 PLKTLYTVQDTYNYNDPTCGEMTYICWPTVAPSSAYVYKGGKKAITGWENTLLVPSLKRGVIFRIKLDPTYSTTYDDAVP 399 (454)
T ss_dssp CSEEECCCCTTCCSCCGGGTTCGGGGSSCCCBCCCEECCCCTTCCTTCTTEEEEEBSSSCCEEEEEECTTSSSEEEEEEE
T ss_pred CceecccccccccccccccccccccccCccCcceeEEeCCCCccCcccCCcEEEeecCCCEEEEEEECCCCCeeeeeeee
Confidence 0000 01234788988533 37899999999999999987532 2 22
Q ss_pred EecCCCCceEEEEEE-CCE-EEEEeCCCCeEEE
Q psy13635 301 LINENLPHVFGISLL-GDY-VYWTDWQRRSIDR 331 (357)
Q Consensus 301 i~~~~~~~p~gia~~-~~~-ly~td~~~~~I~~ 331 (357)
++ .....|.+|++. +|. ||+++...+.+++
T Consensus 400 ~~-~~~~R~~dv~~gpDG~~Lyv~~d~~G~i~~ 431 (454)
T 1cru_A 400 MF-KSNNRYRDVIASPDGNVLYVLTDTAGNVQK 431 (454)
T ss_dssp ES-CCSSCEEEEEECTTSSCEEEEECSSCCEEC
T ss_pred ec-ccCCCceeEEECCCCCEEEEEECCCCCCcc
Confidence 33 345699999998 576 9999988888765
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.57 E-value=3.6e-11 Score=112.07 Aligned_cols=241 Identities=16% Similarity=0.123 Sum_probs=180.9
Q ss_pred EEeecCCCCeEEEEEe--CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEE
Q psy13635 33 YALSHHVAAQMLLFAT--SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHN 110 (357)
Q Consensus 33 ~~~~~~~~~~~l~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~ 110 (357)
.+++-++...+++++. .+.|+.+|+... +..........+.++++++.++.||++...++.|+..++.+.. ...
T Consensus 35 ~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~-~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~---~~~ 110 (391)
T 1l0q_A 35 MGAVISPDGTKVYVANAHSNDVSIIDTATN-NVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT---VAG 110 (391)
T ss_dssp EEEEECTTSSEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE---EEE
T ss_pred ceEEECCCCCEEEEECCCCCeEEEEECCCC-eEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCe---EEE
Confidence 4556666667777765 567999998663 3333444444899999999999999999888999999998764 222
Q ss_pred EEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeE
Q psy13635 111 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNL 190 (357)
Q Consensus 111 ~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~l 190 (357)
.+. .-..|.++++++.++.||++....+.|...++...........+ ..|.++++++.++.|
T Consensus 111 ~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-----------------~~~~~~~~~~dg~~l 172 (391)
T 1l0q_A 111 TVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-----------------RSPKGIAVTPDGTKV 172 (391)
T ss_dssp EEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-----------------SSEEEEEECTTSSEE
T ss_pred EEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-----------------CCcceEEECCCCCEE
Confidence 332 33578999999888889999998999999998765443333221 357889999888899
Q ss_pred EEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEE
Q psy13635 191 YWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGIT 270 (357)
Q Consensus 191 Y~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~gia 270 (357)
|++....+.|...++.......... ....|.+++++|.+.+||.+......+.|...++........+... ..|.+++
T Consensus 173 ~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~ 250 (391)
T 1l0q_A 173 YVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIA 250 (391)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEE
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecC-CCccEEE
Confidence 9999888899999988665444443 2357899999998889999986211369999998866555544443 4689999
Q ss_pred EecCCCEEEEEeCCCCeEEEEeCCCCC
Q psy13635 271 LDVDNEKLYWCDAKTDKIEMIDFDGNN 297 (357)
Q Consensus 271 id~~~~~lY~~d~~~~~I~~~~~dG~~ 297 (357)
+++.+..||++....+.|...+.....
T Consensus 251 ~s~dg~~l~~s~~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 251 VTPDGKKVYVALSFXNTVSVIDTATNT 277 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred EccCCCEEEEEcCCCCEEEEEECCCCc
Confidence 998888899998888999999986543
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=5.8e-12 Score=111.62 Aligned_cols=197 Identities=15% Similarity=0.110 Sum_probs=142.6
Q ss_pred CcEEEEEEEccCCEEEEEeC--CCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCC
Q psy13635 71 EEGAAIDYYYKKSMVCWTDH--GTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG 148 (357)
Q Consensus 71 ~~~~~i~~d~~~~~ly~~d~--~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g 148 (357)
..|.|++++++ +.||++.. ..+.|..+++..... ..++.......++|++++ ++.||+++...+++.+++...
T Consensus 21 ~f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v--~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t 95 (266)
T 2iwa_A 21 AFTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKV--ENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRT 95 (266)
T ss_dssp CCEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCE--EEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTT
T ss_pred CCcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCE--EEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCC
Confidence 36899999975 79999975 467999999987641 123323333466788887 789999999999999999874
Q ss_pred CceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecC-----CCCCceE
Q psy13635 149 KKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNT-----DLVEPRA 223 (357)
Q Consensus 149 ~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~-----~~~~P~g 223 (357)
.....-+..+ .|.|..+.+.+++||+++ +.++|..+|+.......-+.- ....|++
T Consensus 96 ~~v~~~i~~g------------------~~~g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ne 156 (266)
T 2iwa_A 96 LSNIKNFTHQ------------------MKDGWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNE 156 (266)
T ss_dssp TEEEEEEECC------------------SSSCCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred CcEEEEEECC------------------CCCeEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCccccccee
Confidence 4322222111 144444444588999999 678999999987443322221 2346889
Q ss_pred EEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeC-C------------CCCceEEEEecCCCEEEEEeCCCCeEEE
Q psy13635 224 ITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKD-R------------LGWPNGITLDVDNEKLYWCDAKTDKIEM 290 (357)
Q Consensus 224 iavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~-~------------l~~P~giaid~~~~~lY~~d~~~~~I~~ 290 (357)
+.+. +|+||.+.+.. ..|.++++........+.- + ...|+||++|+.++++|++....++++.
T Consensus 157 le~~--dg~lyvn~~~~--~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~ 232 (266)
T 2iwa_A 157 LEYI--NGEVWANIWQT--DCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFE 232 (266)
T ss_dssp EEEE--TTEEEEEETTS--SEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred EEEE--CCEEEEecCCC--CeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEE
Confidence 9988 58999999885 4999999976655444432 1 2468999999999999999999999999
Q ss_pred EeCCC
Q psy13635 291 IDFDG 295 (357)
Q Consensus 291 ~~~dG 295 (357)
+++..
T Consensus 233 i~l~~ 237 (266)
T 2iwa_A 233 IKLHL 237 (266)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 98744
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=7.1e-11 Score=115.97 Aligned_cols=300 Identities=13% Similarity=0.108 Sum_probs=207.3
Q ss_pred EEeecCCCCeEEEEEeC-CcEEEEEc--CCCCcceEeccCCCcEEEEEEEc----cCCEEEEEeCCCCeEEEEEcCCCCc
Q psy13635 33 YALSHHVAAQMLLFATS-KDIRIANL--SRPLKPVTIIKDLEEGAAIDYYY----KKSMVCWTDHGTEMISCCTFDGNNV 105 (357)
Q Consensus 33 ~~~~~~~~~~~l~~~~~-~~i~~~~~--~~~~~~~~~~~~~~~~~~i~~d~----~~~~ly~~d~~~~~I~~~~~~g~~~ 105 (357)
.+++.++...+|+.++. +.|..+|+ .. .+....+.....|.+++|++ ++..||.++...+.|..++.....
T Consensus 182 ~~v~~spdg~~l~v~~~d~~V~v~D~~~~t-~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~- 259 (543)
T 1nir_A 182 HISRMSASGRYLLVIGRDARIDMIDLWAKE-PTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE- 259 (543)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEETTSSS-CEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC-
T ss_pred ceEEECCCCCEEEEECCCCeEEEEECcCCC-CcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc-
Confidence 46667777788888885 56899999 33 23333344566899999999 899999999878888888876553
Q ss_pred ceeEEEEeC-C----------cCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCc-eEE-EEecCCCCcceeeeeccCc
Q psy13635 106 GSKHNVITN-G----------LITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKK-RKV-LYWEDIDQPRAIASYKLPT 172 (357)
Q Consensus 106 ~~~~~~~~~-~----------~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~-~~~-~~~~~~~~p~~i~~~~~~~ 172 (357)
....+.. + -..+.++++.+.++.+|++....++|..++..... ..+ .+..
T Consensus 260 --~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~--------------- 322 (543)
T 1nir_A 260 --PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA--------------- 322 (543)
T ss_dssp --EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEEC---------------
T ss_pred --cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEecc---------------
Confidence 2222221 1 12567899998889999999999999999986532 221 1111
Q ss_pred ccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEec-CCCCCc-eEEEE-eCCCCEEEEEeCCCCCCeEEEEe
Q psy13635 173 IEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVN-TDLVEP-RAITL-SPAHGYLFWSDWNEKRPKIERSL 249 (357)
Q Consensus 173 ~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~-~~~~~P-~giav-d~~~g~Ly~~d~~~~~~~I~~~~ 249 (357)
-..|.++++|+.++++|++....++|.+.+.........+. ....+| .+..+ +|..|.+|.+..... ..|...+
T Consensus 323 --~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d-~~V~v~d 399 (543)
T 1nir_A 323 --APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGD-GSISLIG 399 (543)
T ss_dssp --CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSS-SEEEEEE
T ss_pred --CcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCC-ceEEEEE
Confidence 13689999999888899999888999999987554433333 222233 35544 677789998876322 5888888
Q ss_pred cCC-------CceEEEeeCCCCCceEEEEecCCCEEEEEeCC------CCeEEEEeCCCCCeE-EEe--------cCCCC
Q psy13635 250 LNG-------GERVLLVKDRLGWPNGITLDVDNEKLYWCDAK------TDKIEMIDFDGNNRR-ELI--------NENLP 307 (357)
Q Consensus 250 ~dg-------~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~------~~~I~~~~~dG~~~~-~i~--------~~~~~ 307 (357)
.+. ......+...-..+..+++.+.+.+||+.... .+.|..++.+..... ..+ .+...
T Consensus 400 ~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~ 479 (543)
T 1nir_A 400 TDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAK 479 (543)
T ss_dssp CCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCC
T ss_pred eCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCC
Confidence 875 23333333333456789999888888776521 458999998643332 332 23456
Q ss_pred ceEEEEEE--CCEEEEEeCC----CCeEEEEeCccCceeEEEec-ccCCceeee
Q psy13635 308 HVFGISLL--GDYVYWTDWQ----RRSIDRVNKITGNDREVIIE-RSCTGVTRR 354 (357)
Q Consensus 308 ~p~gia~~--~~~ly~td~~----~~~I~~~~~~~g~~~~~i~~-~l~~p~~i~ 354 (357)
.+..+++. +..+|++.|. .+.|..+|..+++....|.. .+..|.|..
T Consensus 480 ~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~~~~~p~g~~ 533 (543)
T 1nir_A 480 RVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPRLITPTGKF 533 (543)
T ss_dssp EEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCTTCCSEEEEE
T ss_pred ceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCCCccCCCeee
Confidence 77888885 6889999873 58899999989998888763 577777653
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-11 Score=111.85 Aligned_cols=263 Identities=11% Similarity=0.019 Sum_probs=174.5
Q ss_pred EeecCCCCeEEEEEeC--CcEEEEEcC--CCCcceE--eccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcC-CCCcc
Q psy13635 34 ALSHHVAAQMLLFATS--KDIRIANLS--RPLKPVT--IIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFD-GNNVG 106 (357)
Q Consensus 34 ~~~~~~~~~~l~~~~~--~~i~~~~~~--~~~~~~~--~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~-g~~~~ 106 (357)
+++-++...+|+++.. ..|..++++ ++ .... .......|.++++++.+..||+++..++.|..++++ |..
T Consensus 42 ~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~-- 118 (343)
T 1ri6_A 42 PMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG-ALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP-- 118 (343)
T ss_dssp CEEECTTSSEEEEEETTTTEEEEEEECTTTC-CEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEE--
T ss_pred eEEECCCCCEEEEeecCCCeEEEEEecCCCC-ceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcc--
Confidence 3455556677888776 578887776 32 2222 222334789999999989999999888888888874 221
Q ss_pred eeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCC-CceEEEE--ecCCCCcceeeeeccCcccccCCceEEE
Q psy13635 107 SKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG-KKRKVLY--WEDIDQPRAIASYKLPTIEVEHPDGVAV 183 (357)
Q Consensus 107 ~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g-~~~~~~~--~~~~~~p~~i~~~~~~~~~~~~p~glav 183 (357)
............|.++++++.++.||+++...++|.+++++. .....+. ... ......|.++++
T Consensus 119 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~ 185 (343)
T 1ri6_A 119 VGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT-------------TVEGAGPRHMVF 185 (343)
T ss_dssp EEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE-------------CSTTCCEEEEEE
T ss_pred ccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccc-------------cCCCCCcceEEE
Confidence 112222344557999999998889999997788999988865 3222211 000 111136888999
Q ss_pred eCCCCeEEEEeCCCCeEEEEEcCC---Cc--eEEEe--cCC---CCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecC--
Q psy13635 184 DWVARNLYWTDTGTDRIEVCRLEG---TH--RKVLV--NTD---LVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLN-- 251 (357)
Q Consensus 184 D~~~~~lY~td~~~~~I~~~~~~g---~~--~~~~~--~~~---~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~d-- 251 (357)
++.++.||+++...+.|...+++. .. ...+. ... ...|.+++++|.+..||++.... +.|...+++
T Consensus 186 ~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~--~~i~v~d~~~~ 263 (343)
T 1ri6_A 186 HPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA--SLITVFSVSED 263 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT--TEEEEEEECTT
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCC--CEEEEEEEcCC
Confidence 988888999998888999999863 21 11121 111 34677899999877999998763 588888876
Q ss_pred CCceEEE--eeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCC--CCCeEEEec-CCCCceEEEEEE
Q psy13635 252 GGERVLL--VKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFD--GNNRRELIN-ENLPHVFGISLL 315 (357)
Q Consensus 252 g~~~~~~--~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~d--G~~~~~i~~-~~~~~p~gia~~ 315 (357)
+.....+ +... ..|.++++++.+..||++....+.|...+.+ +...+.+.. .....|.++++.
T Consensus 264 ~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~ 331 (343)
T 1ri6_A 264 GSVLSKEGFQPTE-TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVN 331 (343)
T ss_dssp SCCEEEEEEEECS-SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEEEEE
T ss_pred CCceEEeeeecCC-CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccCCCCeeEEEE
Confidence 4333332 2223 3499999998888899999877887776443 333322221 124678888876
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-11 Score=115.45 Aligned_cols=286 Identities=9% Similarity=0.031 Sum_probs=175.2
Q ss_pred CeEEEEEeC-------CcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeC---------CCCeEEEEEcCCCC
Q psy13635 41 AQMLLFATS-------KDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDH---------GTEMISCCTFDGNN 104 (357)
Q Consensus 41 ~~~l~~~~~-------~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~---------~~~~I~~~~~~g~~ 104 (357)
..++|+++. +.|.++|.... +....++....| ++++++++..+|+++. .++.|..++.....
T Consensus 15 ~~~~yv~~~~~~~~~d~~v~v~D~~t~-~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~ 92 (361)
T 2oiz_A 15 ENRIYVMDSVFMHLTESRVHVYDYTNG-KFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT 92 (361)
T ss_dssp GGEEEEEECCGGGGGGCEEEEEETTTC-CEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC
T ss_pred CCEEEEECCCCCccccCeEEEEECCCC-eEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc
Confidence 346777662 36889998653 333334444578 9999999999999974 23568888887553
Q ss_pred cceeEEEEeC-----CcCCceeEEEEcCCCeEEEEeCC-CCEEEEEEcCCCceEEEEe-cCCCCcceeeeeccCcccccC
Q psy13635 105 VGSKHNVITN-----GLITPDGLAIDWLTEKLYWTDSE-TNKLEVSSLDGKKRKVLYW-EDIDQPRAIASYKLPTIEVEH 177 (357)
Q Consensus 105 ~~~~~~~~~~-----~~~~p~glavd~~~~~ly~td~~-~~~I~~~~~~g~~~~~~~~-~~~~~p~~i~~~~~~~~~~~~ 177 (357)
. ..++... .-..|.++++++.++.||+++.. .+.|.+++++.... +.. -.. ..
T Consensus 93 ~--~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~--~~~~i~~----------------~~ 152 (361)
T 2oiz_A 93 F--EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDY--VEDVTAA----------------AG 152 (361)
T ss_dssp E--EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEE--EEEEGGG----------------TT
T ss_pred E--EEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcE--EEEEecC----------------CC
Confidence 1 1222211 12579999999999999999975 68999999876532 211 111 11
Q ss_pred CceEEEeCCCCeEEEEeCCCCeEEEEEcC--CCceEEEe----cCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecC
Q psy13635 178 PDGVAVDWVARNLYWTDTGTDRIEVCRLE--GTHRKVLV----NTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLN 251 (357)
Q Consensus 178 p~glavD~~~~~lY~td~~~~~I~~~~~~--g~~~~~~~----~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~d 251 (357)
..++.+.+.++..|++....+++..++.+ |+...... ...-..|..+...+....+++.... +.+..+++.
T Consensus 153 ~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~v~v~d~~ 229 (361)
T 2oiz_A 153 CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYY---GNVYSADFS 229 (361)
T ss_dssp EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTT---SEEEEEECS
T ss_pred cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCC---CeEEEEEec
Confidence 12233444444455554444555444443 22211110 0111234444434444566665543 477777776
Q ss_pred CCceEEEee----C-----CCCCceE---EEEecCCCEEEEEeC----------CCCeEEEEeCCCCCeEEEecCCCCce
Q psy13635 252 GGERVLLVK----D-----RLGWPNG---ITLDVDNEKLYWCDA----------KTDKIEMIDFDGNNRRELINENLPHV 309 (357)
Q Consensus 252 g~~~~~~~~----~-----~l~~P~g---iaid~~~~~lY~~d~----------~~~~I~~~~~dG~~~~~i~~~~~~~p 309 (357)
+.....+-. . ....|.| +++++.++++|++.. ..+.|+.+|.........+.... |
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p 307 (361)
T 2oiz_A 230 GDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--A 307 (361)
T ss_dssp SSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--C
T ss_pred CCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--e
Confidence 544332211 0 0112444 899988899999864 24589999986654433333222 9
Q ss_pred EEEEEE--CCEEEEEeCCCCeEEEEeCccC--ceeEEEecccCCceeeee
Q psy13635 310 FGISLL--GDYVYWTDWQRRSIDRVNKITG--NDREVIIERSCTGVTRRR 355 (357)
Q Consensus 310 ~gia~~--~~~ly~td~~~~~I~~~~~~~g--~~~~~i~~~l~~p~~i~~ 355 (357)
.+|++. +.+||.++. +.|..++..++ +....+......|.++..
T Consensus 308 ~~ia~spdg~~l~v~n~--~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~ 355 (361)
T 2oiz_A 308 LSMTIDQQRNLMLTLDG--GNVNVYDISQPEPKLLRTIEGAAEASLQVQF 355 (361)
T ss_dssp CEEEEETTTTEEEEECS--SCEEEEECSSSSCEEEEEETTSCSSEEEEEE
T ss_pred eEEEECCCCCEEEEeCC--CeEEEEECCCCcceeeEEeccCCCCcEEEEe
Confidence 999997 578999985 89999999889 888887666678888764
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.5e-13 Score=120.24 Aligned_cols=241 Identities=15% Similarity=0.071 Sum_probs=160.7
Q ss_pred CcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCc-------CCceeEEE---EcCCCeEEE-EeC---
Q psy13635 71 EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGL-------ITPDGLAI---DWLTEKLYW-TDS--- 136 (357)
Q Consensus 71 ~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~-------~~p~glav---d~~~~~ly~-td~--- 136 (357)
-.|.++++|..++++|+++...+.|.+++.++.. ..++...++ ..|.||.+ |+. +.|++ ++.
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~---~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~a 88 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQS---HFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKS 88 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCC---EEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCe---EEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEccccc
Confidence 3688899999999999999999999999998653 123333332 25789999 775 88887 452
Q ss_pred ---------CCCEEEEEEcC----CCceEEEEecCCCCc-ceeeeeccCcccccCCceEEEeCCCCeEEEEeCCC-CeEE
Q psy13635 137 ---------ETNKLEVSSLD----GKKRKVLYWEDIDQP-RAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGT-DRIE 201 (357)
Q Consensus 137 ---------~~~~I~~~~~~----g~~~~~~~~~~~~~p-~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~-~~I~ 201 (357)
+...+.+++++ |+....+-.+..... .. +.......|+++++| ..|+.|+++... +.|.
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~-----~~g~~~~~~nDvavD-~~GnaYVt~s~~~~~I~ 162 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEK-----KAGKRPFGVVQSAQD-RDGNSYVAFALGMPAIA 162 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHH-----HHSSCCEEEEEEEEC-TTSCEEEEEEESSCEEE
T ss_pred ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccc-----cccccccCCceeEEC-CCCCEEEeCCCCCCeEE
Confidence 35789999998 544433321110000 00 000022358999999 578999999998 9999
Q ss_pred EEEcCCCceEEEecC-----CCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEE-ee-----CCCCCceEE-
Q psy13635 202 VCRLEGTHRKVLVNT-----DLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLL-VK-----DRLGWPNGI- 269 (357)
Q Consensus 202 ~~~~~g~~~~~~~~~-----~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~-~~-----~~l~~P~gi- 269 (357)
++++||+........ ....|+||+++|.+..|++++. . ++|.++++.......+ .. ..+..|.+|
T Consensus 163 rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~--g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgil 239 (334)
T 2p9w_A 163 RVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-P--RALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIV 239 (334)
T ss_dssp EECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-S--SSEEEEECSSSSCCCEECEESSCCCCCTTEEEEE
T ss_pred EEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-C--CeEEEEcCCCCcceeecccccCCcccccCccccc
Confidence 999999966554321 1234779999998778888887 3 6999999884332112 21 146789995
Q ss_pred EEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEec---CCCCceEEEEEE-------CCEEEEEeCC
Q psy13635 270 TLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELIN---ENLPHVFGISLL-------GDYVYWTDWQ 325 (357)
Q Consensus 270 aid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~---~~~~~p~gia~~-------~~~ly~td~~ 325 (357)
++...+.-|++++...+.+...+.||-....+.. ..+. +.|++++ ++++|+.+..
T Consensus 240 p~~~~G~vllV~~~~~~~~~l~S~DgW~sa~~~g~~~~~~~-~~g~tt~t~~~~~~~~~iYvv~~~ 304 (334)
T 2p9w_A 240 TVPVGNESVLVGARAPYAISFRSWDNWKSANIKKTKRSELQ-NSGFTAVADYYQGSEQGLYAVSAF 304 (334)
T ss_dssp EEEETTEEEEEEEETTEEEEEECSSTTSEEEEEEEECGGGG-SSCEEEEEEEEETTEEEEEEEECC
T ss_pred ccccCCEEEEEEcCCCCEEEEECCCCcceeEEeeeecCccc-cCceeEEEEeccccCCeEEEEeee
Confidence 7764444449999877777777888844433332 1122 5565544 3778888744
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.55 E-value=6.8e-11 Score=111.69 Aligned_cols=274 Identities=14% Similarity=0.111 Sum_probs=193.6
Q ss_pred EeecCCCCeEEEEEeC--CcEEEEEcCCCCcceEe-----ccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcc
Q psy13635 34 ALSHHVAAQMLLFATS--KDIRIANLSRPLKPVTI-----IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVG 106 (357)
Q Consensus 34 ~~~~~~~~~~l~~~~~--~~i~~~~~~~~~~~~~~-----~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~ 106 (357)
+++.++ ...++++.. +.|+.+|+.+....... ......+.++++++ ++.+|++...++.|+..++++..
T Consensus 127 ~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~v~~~d~~~~~-- 202 (433)
T 3bws_A 127 SVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE-HNELWVSQMQANAVHVFDLKTLA-- 202 (433)
T ss_dssp CCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG-GTEEEEEEGGGTEEEEEETTTCC--
T ss_pred EEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC-CCEEEEEECCCCEEEEEECCCce--
Confidence 344444 445666663 35999999764333211 12344677888854 78899999888999999998764
Q ss_pred eeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCC
Q psy13635 107 SKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWV 186 (357)
Q Consensus 107 ~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~ 186 (357)
....+......|.++++++.++.+|++....+.|.+.++........... ...|.++++++.
T Consensus 203 -~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-----------------~~~~~~~~~~~~ 264 (433)
T 3bws_A 203 -YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-----------------IGLPRGLLLSKD 264 (433)
T ss_dssp -EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-----------------CSEEEEEEECTT
T ss_pred -EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-----------------CCCceEEEEcCC
Confidence 23344444567999999998889999998889999999865543222111 124788999988
Q ss_pred CCeEEEEeC-------CCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEe
Q psy13635 187 ARNLYWTDT-------GTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLV 259 (357)
Q Consensus 187 ~~~lY~td~-------~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~ 259 (357)
++.||.+.. ..+.|...++.......... ....|.+++++|.+..||++.... +.|...+++.......+
T Consensus 265 g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~--~~v~v~d~~~~~~~~~~ 341 (433)
T 3bws_A 265 GKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCC--SKIEVYDLKEKKVQKSI 341 (433)
T ss_dssp SSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTT--TEEEEEETTTTEEEEEE
T ss_pred CCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCC--CEEEEEECCCCcEEEEe
Confidence 888998875 34588899987554433332 123789999999877899998774 59999999866555444
Q ss_pred eCCCCCceEEEEecCCCEEEEEeCCC--------------CeEEEEeCCCCCeEEEecCCCCceEEEEEE--CCEEEEEe
Q psy13635 260 KDRLGWPNGITLDVDNEKLYWCDAKT--------------DKIEMIDFDGNNRRELINENLPHVFGISLL--GDYVYWTD 323 (357)
Q Consensus 260 ~~~l~~P~giaid~~~~~lY~~d~~~--------------~~I~~~~~dG~~~~~i~~~~~~~p~gia~~--~~~ly~td 323 (357)
. ....|.++++++.+..||++.... +.|+..+.........+. ....|.++++. +..||++.
T Consensus 342 ~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~ 419 (433)
T 3bws_A 342 P-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE-AGNQPTGLDVSPDNRYLVISD 419 (433)
T ss_dssp E-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSCEEEEEE
T ss_pred c-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec-CCCCCceEEEcCCCCEEEEEE
Confidence 3 346789999998888899998764 489999986544433333 24578899986 46788888
Q ss_pred CCCCeEEEEeC
Q psy13635 324 WQRRSIDRVNK 334 (357)
Q Consensus 324 ~~~~~I~~~~~ 334 (357)
...+.|...+.
T Consensus 420 ~~d~~i~v~~~ 430 (433)
T 3bws_A 420 FLDHQIRVYRR 430 (433)
T ss_dssp TTTTEEEEEEE
T ss_pred CCCCeEEEEEe
Confidence 77788877765
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.7e-10 Score=106.54 Aligned_cols=260 Identities=9% Similarity=0.054 Sum_probs=167.7
Q ss_pred eecCCCCeEEEEEeC-----CcEEEEEcCCC-CcceEe---ccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCc
Q psy13635 35 LSHHVAAQMLLFATS-----KDIRIANLSRP-LKPVTI---IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNV 105 (357)
Q Consensus 35 ~~~~~~~~~l~~~~~-----~~i~~~~~~~~-~~~~~~---~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~ 105 (357)
++.++...+|+.++. ..+..++++.. ...+.+ ......|..+++ .++.||+++..++.|..++++....
T Consensus 55 l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~ 132 (361)
T 3scy_A 55 LIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGA 132 (361)
T ss_dssp EEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSC
T ss_pred EEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCc
Confidence 455566677888876 36755554432 223322 224457888888 5788999998888888888764321
Q ss_pred c-eeEEE-EeCC---------cCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCc-------eEE-----EEecCCCCc
Q psy13635 106 G-SKHNV-ITNG---------LITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKK-------RKV-----LYWEDIDQP 162 (357)
Q Consensus 106 ~-~~~~~-~~~~---------~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~-------~~~-----~~~~~~~~p 162 (357)
. ..... ...+ ...|.++++++.++.||+++...++|.+++++... ... ...
T Consensus 133 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~------ 206 (361)
T 3scy_A 133 LLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFK------ 206 (361)
T ss_dssp BCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEE------
T ss_pred CcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccccee------
Confidence 1 11111 1111 12357899999888899999989999988776432 111 111
Q ss_pred ceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEe-----cCCCCCceEEEEeCCCCEEEEEe
Q psy13635 163 RAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLV-----NTDLVEPRAITLSPAHGYLFWSD 237 (357)
Q Consensus 163 ~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~-----~~~~~~P~giavd~~~g~Ly~~d 237 (357)
......|.++++++.++.||+++...+.|.+.++++.....+. ......|.+++++|.+.+||+++
T Consensus 207 ---------~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~ 277 (361)
T 3scy_A 207 ---------VAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASN 277 (361)
T ss_dssp ---------CCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEE
T ss_pred ---------cCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEEC
Confidence 1122468899999888899999988889999888644332221 12345688999999888899998
Q ss_pred CC-CCCCeEEEEecC--CCceEEE--eeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCC--CCCeEEEecC-CCCce
Q psy13635 238 WN-EKRPKIERSLLN--GGERVLL--VKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFD--GNNRRELINE-NLPHV 309 (357)
Q Consensus 238 ~~-~~~~~I~~~~~d--g~~~~~~--~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~d--G~~~~~i~~~-~~~~p 309 (357)
.. .+ .|...+++ ......+ +.. -..|.++++++++..||+++...+.|..+..| ....+.+... ....|
T Consensus 278 ~~~~~--~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p 354 (361)
T 3scy_A 278 RLKAD--GVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKP 354 (361)
T ss_dssp CSSSC--EEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSE
T ss_pred CCCCC--EEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCC
Confidence 77 43 66666654 3332222 223 45799999998888899999888888775444 3333333211 34567
Q ss_pred EEEEE
Q psy13635 310 FGISL 314 (357)
Q Consensus 310 ~gia~ 314 (357)
..|++
T Consensus 355 ~~v~~ 359 (361)
T 3scy_A 355 VCLKF 359 (361)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 76654
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.52 E-value=1.7e-11 Score=114.39 Aligned_cols=288 Identities=11% Similarity=0.010 Sum_probs=175.8
Q ss_pred ecCCCCeEEEEEeC------CcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeC---------CCCeEEEEEc
Q psy13635 36 SHHVAAQMLLFATS------KDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDH---------GTEMISCCTF 100 (357)
Q Consensus 36 ~~~~~~~~l~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~---------~~~~I~~~~~ 100 (357)
...+....+|+++. +.+..+|... .+....++....|. +++++++..+|+++. .++.|..++.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t-~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEA-GRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTT-TEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCC-CeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 34455667888875 3689999876 33333344445575 999999999999984 2457888988
Q ss_pred CCCCcceeEEEEeCC------cCCceeEEEEcCCCeEEEEeCC-CCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcc
Q psy13635 101 DGNNVGSKHNVITNG------LITPDGLAIDWLTEKLYWTDSE-TNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTI 173 (357)
Q Consensus 101 ~g~~~~~~~~~~~~~------~~~p~glavd~~~~~ly~td~~-~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~ 173 (357)
..... ..++.... -..|.++++++.++.||+++.. .+.|.++++........+...-+ .
T Consensus 117 ~t~~v--~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~---------- 182 (386)
T 3sjl_D 117 VTLLP--TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--Y---------- 182 (386)
T ss_dssp TTCCE--EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--E----------
T ss_pred CCCeE--EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--c----------
Confidence 87641 12232221 2479999999999999999974 78999999876544322221100 0
Q ss_pred cccCCce----EEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceE--EEEeCCCCEEEEEeCCCCCCeEEE
Q psy13635 174 EVEHPDG----VAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRA--ITLSPAHGYLFWSDWNEKRPKIER 247 (357)
Q Consensus 174 ~~~~p~g----lavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~g--iavd~~~g~Ly~~d~~~~~~~I~~ 247 (357)
...|.| +++.+.+..+|++....+++.... ..... ....|.. .++++..|+++|...+ ++++.
T Consensus 183 -~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~------~~~~~-~~~~~~~~~~~~~~~dG~~~~vs~~---g~V~v 251 (386)
T 3sjl_D 183 -HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH------TEVFH-PEDEFLINHPAYSQKAGRLVWPTYT---GKIHQ 251 (386)
T ss_dssp -EEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE------CCCCS-CTTSCBCSCCEEETTTTEEEEEBTT---SEEEE
T ss_pred -eeecCCCceeEEECCCCCEEEEECCCCCeEEEee------cceec-cccccccccceeEcCCCcEEEEeCC---CEEEE
Confidence 012332 233332323333222223331100 00110 1112222 3666567887776554 58999
Q ss_pred EecCCCceEEEeeCC---------CCCce---EEEEecCCCEEEEEeC---------CCCeEEEEeCCCCCeEEEecCCC
Q psy13635 248 SLLNGGERVLLVKDR---------LGWPN---GITLDVDNEKLYWCDA---------KTDKIEMIDFDGNNRRELINENL 306 (357)
Q Consensus 248 ~~~dg~~~~~~~~~~---------l~~P~---giaid~~~~~lY~~d~---------~~~~I~~~~~dG~~~~~i~~~~~ 306 (357)
++..+.....+-.-. -..|. .+++++..++||++.. ..++|+.+|.....+..-+. ..
T Consensus 252 ~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~-vg 330 (386)
T 3sjl_D 252 IDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MG 330 (386)
T ss_dssp EECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EE
T ss_pred EECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE-CC
Confidence 999877654331110 01233 3778899999999863 23689999986655433222 12
Q ss_pred CceEEEEEE--CC-EEEEEeCCCCeEEEEeCccCceeEEEecccCCcee
Q psy13635 307 PHVFGISLL--GD-YVYWTDWQRRSIDRVNKITGNDREVIIERSCTGVT 352 (357)
Q Consensus 307 ~~p~gia~~--~~-~ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~ 352 (357)
..|.+|++. +. .||.+++.++.|..+|..+++....+... ..|..
T Consensus 331 ~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~ 378 (386)
T 3sjl_D 331 HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL-GHGPQ 378 (386)
T ss_dssp EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC-CSSCC
T ss_pred CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC-CCCce
Confidence 367899986 33 69999999999999999999988888665 34443
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-10 Score=114.29 Aligned_cols=288 Identities=8% Similarity=-0.022 Sum_probs=190.0
Q ss_pred CeEEEEEeC--CcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcC--CCCcceeEEEEeCCc
Q psy13635 41 AQMLLFATS--KDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFD--GNNVGSKHNVITNGL 116 (357)
Q Consensus 41 ~~~l~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~--g~~~~~~~~~~~~~~ 116 (357)
...+++++. +.|..+|..... ....++....++++++++++..||.++.. +.|..++++ .. .....+.. -
T Consensus 148 ~~~~~vs~~~d~~V~v~D~~t~~-~~~~i~~g~~~~~v~~spdg~~l~v~~~d-~~V~v~D~~~~t~---~~~~~i~~-g 221 (543)
T 1nir_A 148 PNLFSVTLRDAGQIALVDGDSKK-IVKVIDTGYAVHISRMSASGRYLLVIGRD-ARIDMIDLWAKEP---TKVAEIKI-G 221 (543)
T ss_dssp GGEEEEEEGGGTEEEEEETTTCC-EEEEEECSTTEEEEEECTTSCEEEEEETT-SEEEEEETTSSSC---EEEEEEEC-C
T ss_pred CCEEEEEEcCCCeEEEEECCCce-EEEEEecCcccceEEECCCCCEEEEECCC-CeEEEEECcCCCC---cEEEEEec-C
Confidence 345677764 468999987643 33333322349999999999999999877 899999993 32 12333333 3
Q ss_pred CCceeEEEEc----CCCeEEEEeCCCCEEEEEEcCCCceEEEEec-CCCCcceeeeeccCcccccCCceEEEeCCCCeEE
Q psy13635 117 ITPDGLAIDW----LTEKLYWTDSETNKLEVSSLDGKKRKVLYWE-DIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLY 191 (357)
Q Consensus 117 ~~p~glavd~----~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~-~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY 191 (357)
..|.++++++ .++.||+++...++|..++.........+.. +.... .... ..-..+.++++.+.++.+|
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~-~~~~-----~~~~~v~~i~~s~~~~~~~ 295 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVD-TQTY-----HPEPRVAAIIASHEHPEFI 295 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSS-SCCE-----ESCCCEEEEEECSSSSEEE
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccC-cccc-----ccCCceEEEEECCCCCEEE
Confidence 4699999998 8999999998889999998765443333221 10000 0000 0011467888998889999
Q ss_pred EEeCCCCeEEEEEcCCCc-eE-EEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCC-CCCc-e
Q psy13635 192 WTDTGTDRIEVCRLEGTH-RK-VLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDR-LGWP-N 267 (357)
Q Consensus 192 ~td~~~~~I~~~~~~g~~-~~-~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~-l~~P-~ 267 (357)
++....++|..++..... .. ..+. ....|.+++++|.+.++|.+.... ..|..++.........+..+ ..+| .
T Consensus 296 vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~--~~v~v~D~~tg~l~~~i~~g~~ph~g~ 372 (543)
T 1nir_A 296 VNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNS--NKVAVIDSKDRRLSALVDVGKTPHPGR 372 (543)
T ss_dssp EEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGG--TEEEEEETTTTEEEEEEECSSSBCCTT
T ss_pred EEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCC--CeEEEEECCCCeEEEeeccCCCCCCCC
Confidence 999999999999986432 22 1222 346799999999877899998774 48999998766555444432 2223 2
Q ss_pred EEEE-ecCCCEEEEEeC-CCCeEEEEeCCC-------CCeEEEecCCCCceEEEEEE--CCEEEEEeCC------CCeEE
Q psy13635 268 GITL-DVDNEKLYWCDA-KTDKIEMIDFDG-------NNRRELINENLPHVFGISLL--GDYVYWTDWQ------RRSID 330 (357)
Q Consensus 268 giai-d~~~~~lY~~d~-~~~~I~~~~~dG-------~~~~~i~~~~~~~p~gia~~--~~~ly~td~~------~~~I~ 330 (357)
|..+ ++..+.+|++.. +.+.|..++.+. -.....+..+...+..+++. +.+||+.... .++|.
T Consensus 373 g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~ 452 (543)
T 1nir_A 373 GANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVA 452 (543)
T ss_dssp CEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEE
T ss_pred CcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEE
Confidence 4443 556689998875 668999998865 22222333334456667776 4567765421 45899
Q ss_pred EEeCccCcee-EEE
Q psy13635 331 RVNKITGNDR-EVI 343 (357)
Q Consensus 331 ~~~~~~g~~~-~~i 343 (357)
.++..+++.. +.+
T Consensus 453 v~d~~~~~~~~~~~ 466 (543)
T 1nir_A 453 VFDLKNLDAKYQVL 466 (543)
T ss_dssp EEETTCTTSCCEEE
T ss_pred EEECCCCCCCeEEe
Confidence 9999888866 554
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-11 Score=114.01 Aligned_cols=206 Identities=12% Similarity=0.090 Sum_probs=135.4
Q ss_pred eccC-CCcEEEEEEEccCCEEEEEe------------CCCCeEEEEEcCCCCcceeEEEEeCC------cCCceeEEEEc
Q psy13635 66 IIKD-LEEGAAIDYYYKKSMVCWTD------------HGTEMISCCTFDGNNVGSKHNVITNG------LITPDGLAIDW 126 (357)
Q Consensus 66 ~~~~-~~~~~~i~~d~~~~~ly~~d------------~~~~~I~~~~~~g~~~~~~~~~~~~~------~~~p~glavd~ 126 (357)
.++. ...|..|++++ ++.+|.+. ...++|++++++.... ..+++...+ -..|.||.+..
T Consensus 44 ~i~~~~~G~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~-~~~~l~~~g~~~~~~~f~PhGi~~~~ 121 (355)
T 3sre_A 44 LVKGIDNGSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEP-AVSELEIIGNTLDISSFNPHGISTFI 121 (355)
T ss_dssp ECTTCCSCCCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSC-CEEECEEECSSCCGGGCCEEEEEEEE
T ss_pred EeCCCCCCcceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCC-ceEEEEccCCCCCcCceeeeeeEEEE
Confidence 3445 35688888877 78999986 2578999999984321 112322222 24899999965
Q ss_pred C---CCeEEEEeCC--CCEEEE--EEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeC----
Q psy13635 127 L---TEKLYWTDSE--TNKLEV--SSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDT---- 195 (357)
Q Consensus 127 ~---~~~ly~td~~--~~~I~~--~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~---- 195 (357)
. +.+||+++.. ..+|.. ++.++.....+ ..- ....++.|+++++|+ .|.+|+++.
T Consensus 122 d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~-~~~------------~g~~~~~pND~~v~~-~G~fyvt~~~~ft 187 (355)
T 3sre_A 122 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHL-KTI------------RHKLLPSVNDIVAVG-PEHFYATNDHYFI 187 (355)
T ss_dssp CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEE-EEE------------CCTTCSSEEEEEEEE-TTEEEEEESCSCS
T ss_pred CCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEE-ecc------------ccCCCCCCceEEEeC-CCCEEecCCcEeC
Confidence 2 3369999976 455555 45555443332 211 123567899999994 678888865
Q ss_pred -------------CCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCce---EEEe
Q psy13635 196 -------------GTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGER---VLLV 259 (357)
Q Consensus 196 -------------~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~---~~~~ 259 (357)
..++|+++++. ..+.+. .++..|+||+++|++..||++|+.. .+|++.++++... ...+
T Consensus 188 d~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~-~~l~~pNGia~spDg~~lYvadt~~--~~I~~~~~~~~g~l~~~~~~ 262 (355)
T 3sre_A 188 DPYLKSWEMHLGLAWSFVTYYSPN--DVRVVA-EGFDFANGINISPDGKYVYIAELLA--HKIHVYEKHANWTLTPLRVL 262 (355)
T ss_dssp SHHHHHHHHHTTCCCEEEEEECTT--CCEEEE-EEESSEEEEEECTTSSEEEEEEGGG--TEEEEEEECTTSCEEEEEEE
T ss_pred CcccccchhhccCCccEEEEEECC--eEEEee-cCCcccCcceECCCCCEEEEEeCCC--CeEEEEEECCCCcEecCEEE
Confidence 23578998873 344443 4688999999999988999999985 5999999864321 1222
Q ss_pred eCCCCCceEEEEecCCCEEEEEe-CCCCeEEEEeC
Q psy13635 260 KDRLGWPNGITLDVDNEKLYWCD-AKTDKIEMIDF 293 (357)
Q Consensus 260 ~~~l~~P~giaid~~~~~lY~~d-~~~~~I~~~~~ 293 (357)
. ....|.|+++|..+|+||++. .+..+|.++++
T Consensus 263 ~-~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P 296 (355)
T 3sre_A 263 S-FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDA 296 (355)
T ss_dssp E-CSSEEEEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred e-CCCCCceEEEeCCCCcEEEEecCCceEEEEECC
Confidence 2 246799999994258999965 34334443333
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.50 E-value=9.2e-11 Score=106.39 Aligned_cols=268 Identities=9% Similarity=-0.012 Sum_probs=178.5
Q ss_pred CCcEEEEEcCCCCcceEeccCCC---cEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCc-----CCce
Q psy13635 49 SKDIRIANLSRPLKPVTIIKDLE---EGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGL-----ITPD 120 (357)
Q Consensus 49 ~~~i~~~~~~~~~~~~~~~~~~~---~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~-----~~p~ 120 (357)
...|..+|+.+.. ......... .|.++++++.++.+|+++...+.|+.+++.+.. ....+..+. ..|.
T Consensus 10 ~~~v~~~d~~~~~-~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~---~~~~~~~~~~~~~~~~~~ 85 (337)
T 1pby_B 10 PDKLVVIDTEKMA-VDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE---TLGRIDLSTPEERVKSLF 85 (337)
T ss_dssp TTEEEEEETTTTE-EEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC---EEEEEECCBTTEEEECTT
T ss_pred CCeEEEEECCCCc-EEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCC---eEeeEEcCCccccccccc
Confidence 4568889986632 222222222 588999999888999999988999999987664 122222211 2689
Q ss_pred eEEEEcCCCeEEEEeC-----------CCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCe
Q psy13635 121 GLAIDWLTEKLYWTDS-----------ETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARN 189 (357)
Q Consensus 121 glavd~~~~~ly~td~-----------~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~ 189 (357)
++++++.++.||+++. ..+.|.++++.+......+..+ ..|.++++++.++.
T Consensus 86 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-----------------~~~~~~~~s~dg~~ 148 (337)
T 1pby_B 86 GAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-----------------RQITMLAWARDGSK 148 (337)
T ss_dssp CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-----------------SSCCCEEECTTSSC
T ss_pred ceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC-----------------CCcceeEECCCCCE
Confidence 9999998889999962 3589999998765443332211 35889999988888
Q ss_pred EEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCC---------------------CeEEEE
Q psy13635 190 LYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKR---------------------PKIERS 248 (357)
Q Consensus 190 lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~---------------------~~I~~~ 248 (357)
||++ .+.|.+.++.+.......... ..+..++++|....||++...... ..|...
T Consensus 149 l~~~---~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 224 (337)
T 1pby_B 149 LYGL---GRDLHVMDPEAGTLVEDKPIQ-SWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTM 224 (337)
T ss_dssp EEEE---SSSEEEEETTTTEEEEEECST-TTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEE
T ss_pred EEEe---CCeEEEEECCCCcEeeeeecc-ccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEE
Confidence 9998 367999998765543333222 112233566665566665543210 035677
Q ss_pred ecCCCceEEE-eeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEE--CCEEEEEeCC
Q psy13635 249 LLNGGERVLL-VKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLL--GDYVYWTDWQ 325 (357)
Q Consensus 249 ~~dg~~~~~~-~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~--~~~ly~td~~ 325 (357)
++.......+ .......|.++++++.+..||++ .+.|..++++.......+. ....|.++++. +..+|++ ..
T Consensus 225 d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~---~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~-~~ 299 (337)
T 1pby_B 225 DLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA---YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLG-GA 299 (337)
T ss_dssp ETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE---ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEE-SB
T ss_pred eCCCCCceEeecCCCCCceeeEEECCCCCEEEEe---CCeEEEEECCCCcCcceec-CCCceeeEEECCCCCEEEEE-cC
Confidence 7765544322 12233578899999888899998 4789999987654433332 23568889887 4568887 45
Q ss_pred CCeEEEEeCccCceeEEEecc
Q psy13635 326 RRSIDRVNKITGNDREVIIER 346 (357)
Q Consensus 326 ~~~I~~~~~~~g~~~~~i~~~ 346 (357)
.+.|..++..+++....+..+
T Consensus 300 ~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 300 LGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp SSEEEEEETTTCCEEEEEECG
T ss_pred CCcEEEEECcCCcEEEEEEcC
Confidence 689999998888887777554
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-11 Score=111.36 Aligned_cols=210 Identities=13% Similarity=0.063 Sum_probs=145.0
Q ss_pred CCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEE---eCCCCeE
Q psy13635 114 NGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAV---DWVARNL 190 (357)
Q Consensus 114 ~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glav---D~~~~~l 190 (357)
.....|++++.|...+.+|+++..+++|.++++++...+.+...++..+ ......|.||.+ |+. ++|
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~---------g~~~~~~sGl~~~~~D~~-grL 79 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSN---------GDGEQQMSGLSLLTHDNS-KRL 79 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCS---------SCCSEEEEEEEESSSSSC-CEE
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCcccc---------CCCcceeeEEEEeccCCC-CcE
Confidence 3345799999998899999999999999999998654433322221100 011225789999 766 888
Q ss_pred EE-EeC------------CCCeEEEEEcC----CCceEEEec-----C-------CCCCceEEEEeCCCCEEEEEeCCCC
Q psy13635 191 YW-TDT------------GTDRIEVCRLE----GTHRKVLVN-----T-------DLVEPRAITLSPAHGYLFWSDWNEK 241 (357)
Q Consensus 191 Y~-td~------------~~~~I~~~~~~----g~~~~~~~~-----~-------~~~~P~giavd~~~g~Ly~~d~~~~ 241 (357)
++ ++. +...+.+++++ |+....+-. + ....|+++++|+ .|++|+++....
T Consensus 80 ~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~ 158 (334)
T 2p9w_A 80 FAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGM 158 (334)
T ss_dssp EEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESS
T ss_pred EEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCC
Confidence 88 452 24679999998 544433321 1 223589999997 599999998851
Q ss_pred CCeEEEEecCCCceEEEeeCC-----CCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEec------CCCCceE
Q psy13635 242 RPKIERSLLNGGERVLLVKDR-----LGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELIN------ENLPHVF 310 (357)
Q Consensus 242 ~~~I~~~~~dg~~~~~~~~~~-----l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~------~~~~~p~ 310 (357)
+.|++++.||.......... ...|+||++++.+..|++++. .+++.+++++......+-. ..+..|.
T Consensus 159 -~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~d 236 (334)
T 2p9w_A 159 -PAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKPYAWPEPVKINGDFGTLSGTE 236 (334)
T ss_dssp -CEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSSSCCCEECEESSCCCCCTTEE
T ss_pred -CeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCCcceeecccccCCcccccCcc
Confidence 59999999999655443221 234789999988889999998 9999999988432201211 1467899
Q ss_pred EE-EEE-CCEE-EEEeCCCCeEEEEeCccC
Q psy13635 311 GI-SLL-GDYV-YWTDWQRRSIDRVNKITG 337 (357)
Q Consensus 311 gi-a~~-~~~l-y~td~~~~~I~~~~~~~g 337 (357)
+| +.. +|.+ ++++..++.+...++ +|
T Consensus 237 gilp~~~~G~vllV~~~~~~~~~l~S~-Dg 265 (334)
T 2p9w_A 237 KIVTVPVGNESVLVGARAPYAISFRSW-DN 265 (334)
T ss_dssp EEEEEEETTEEEEEEEETTEEEEEECS-ST
T ss_pred cccccccCCEEEEEEcCCCCEEEEECC-CC
Confidence 96 554 6776 999987766555555 44
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4e-11 Score=106.19 Aligned_cols=195 Identities=12% Similarity=0.006 Sum_probs=138.4
Q ss_pred CCceeEEEEcCCCeEEEEeC--CCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEe
Q psy13635 117 ITPDGLAIDWLTEKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTD 194 (357)
Q Consensus 117 ~~p~glavd~~~~~ly~td~--~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td 194 (357)
..|.|+++++. +.||++.. +.++|.++++........+.-+ ....+.|++++ +++||+++
T Consensus 21 ~f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~---------------~~~fgeGi~~~--g~~lyv~t 82 (266)
T 2iwa_A 21 AFTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMD---------------DSYFGEGLTLL--NEKLYQVV 82 (266)
T ss_dssp CCEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECC---------------TTCCEEEEEEE--TTEEEEEE
T ss_pred CCcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecC---------------CCcceEEEEEe--CCEEEEEE
Confidence 36899999964 79999975 4789999998754433222111 11245677887 67999999
Q ss_pred CCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeC-----CCCCceEE
Q psy13635 195 TGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKD-----RLGWPNGI 269 (357)
Q Consensus 195 ~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~-----~l~~P~gi 269 (357)
+..+++.++|.+......-+..+ .|.|..+.+..++||+++ +. ++|..++.+......-+.. .+..|+++
T Consensus 83 ~~~~~v~viD~~t~~v~~~i~~g--~~~g~glt~Dg~~l~vs~-gs--~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nel 157 (266)
T 2iwa_A 83 WLKNIGFIYDRRTLSNIKNFTHQ--MKDGWGLATDGKILYGSD-GT--SILYEIDPHTFKLIKKHNVKYNGHRVIRLNEL 157 (266)
T ss_dssp TTCSEEEEEETTTTEEEEEEECC--SSSCCEEEECSSSEEEEC-SS--SEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred ecCCEEEEEECCCCcEEEEEECC--CCCeEEEEECCCEEEEEC-CC--CeEEEEECCCCcEEEEEEECCCCcccccceeE
Confidence 99999999998754332223222 344555555578999998 43 5999999987655443332 24468899
Q ss_pred EEecCCCEEEEEeCCCCeEEEEeCCCCCe-EEEecCC------------CCceEEEEEE--CCEEEEEeCCCCeEEEEeC
Q psy13635 270 TLDVDNEKLYWCDAKTDKIEMIDFDGNNR-RELINEN------------LPHVFGISLL--GDYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 270 aid~~~~~lY~~d~~~~~I~~~~~dG~~~-~~i~~~~------------~~~p~gia~~--~~~ly~td~~~~~I~~~~~ 334 (357)
++. +++||++.+..+.|.++|+..... ..+-... ...|.||+++ ++++|+|....++|+.++.
T Consensus 158 e~~--dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 158 EYI--NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL 235 (266)
T ss_dssp EEE--TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred EEE--CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence 985 689999999999999999965443 3332211 2478999998 4699999999999999986
Q ss_pred cc
Q psy13635 335 IT 336 (357)
Q Consensus 335 ~~ 336 (357)
..
T Consensus 236 ~~ 237 (266)
T 2iwa_A 236 HL 237 (266)
T ss_dssp EE
T ss_pred ec
Confidence 43
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.5e-12 Score=117.84 Aligned_cols=202 Identities=14% Similarity=0.034 Sum_probs=135.6
Q ss_pred cCCceeEEEEcCCCeEEEEe------------CCCCEEEEEEcCCC--ceEEEEecCC-CCcceeeeeccCcccccCCce
Q psy13635 116 LITPDGLAIDWLTEKLYWTD------------SETNKLEVSSLDGK--KRKVLYWEDI-DQPRAIASYKLPTIEVEHPDG 180 (357)
Q Consensus 116 ~~~p~glavd~~~~~ly~td------------~~~~~I~~~~~~g~--~~~~~~~~~~-~~p~~i~~~~~~~~~~~~p~g 180 (357)
...|+.+++++ ++.+|.+. ...++|.+++++.. ..+.+...+. . ...-..|.|
T Consensus 49 ~~G~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~-----------~~~~f~PhG 116 (355)
T 3sre_A 49 DNGSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTL-----------DISSFNPHG 116 (355)
T ss_dssp CSCCCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSC-----------CGGGCCEEE
T ss_pred CCCcceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCC-----------CcCceeeee
Confidence 46799999996 78999986 25789999998742 2233322221 0 111237999
Q ss_pred EEEeCC---CCeEEEEeCCC--CeE--EEEEcCCCceEEE---ecCCCCCceEEEEeCCCCEEEEEeCC-----------
Q psy13635 181 VAVDWV---ARNLYWTDTGT--DRI--EVCRLEGTHRKVL---VNTDLVEPRAITLSPAHGYLFWSDWN----------- 239 (357)
Q Consensus 181 lavD~~---~~~lY~td~~~--~~I--~~~~~~g~~~~~~---~~~~~~~P~giavd~~~g~Ly~~d~~----------- 239 (357)
|.+... ..+||+++... .+| ++.+.++.....+ ....+..|+++++++. |.+|+++..
T Consensus 117 i~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~-G~fyvt~~~~ftd~~~~~~e 195 (355)
T 3sre_A 117 ISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGP-EHFYATNDHYFIDPYLKSWE 195 (355)
T ss_dssp EEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEET-TEEEEEESCSCSSHHHHHHH
T ss_pred eEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCC-CCEEecCCcEeCCcccccch
Confidence 999642 34799999873 454 4455555543322 2235788999999975 898888641
Q ss_pred ----CCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCe---EEEecCCCCceEEE
Q psy13635 240 ----EKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNR---RELINENLPHVFGI 312 (357)
Q Consensus 240 ----~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~---~~i~~~~~~~p~gi 312 (357)
...+++++++.. ..+. +..++..|+||++++++..||++|...++|++++.++.+. ..+. .....|.|+
T Consensus 196 ~~~~~~~g~vyr~d~~--~~~~-~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi 271 (355)
T 3sre_A 196 MHLGLAWSFVTYYSPN--DVRV-VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNI 271 (355)
T ss_dssp HHTTCCCEEEEEECTT--CCEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEE
T ss_pred hhccCCccEEEEEECC--eEEE-eecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceE
Confidence 113689998873 3333 3467899999999988889999999999999999864321 1223 234689999
Q ss_pred EEE-C-CEEEEEe-CCCCeEEEEeC
Q psy13635 313 SLL-G-DYVYWTD-WQRRSIDRVNK 334 (357)
Q Consensus 313 a~~-~-~~ly~td-~~~~~I~~~~~ 334 (357)
+++ + |.+|++. +...+|.++++
T Consensus 272 ~vD~e~G~lwva~~~~g~~v~~~~P 296 (355)
T 3sre_A 272 SVDPVTGDLWVGCHPNGMRIFFYDA 296 (355)
T ss_dssp EECTTTCCEEEEEESCHHHHHSCCT
T ss_pred EEeCCCCcEEEEecCCceEEEEECC
Confidence 999 4 8999955 55334444433
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-10 Score=108.49 Aligned_cols=265 Identities=13% Similarity=0.040 Sum_probs=162.3
Q ss_pred CCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcC-CCCcceeEEEEe-CCcCCceeEEEEcCCCeE--EEEe-------C-
Q psy13635 69 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFD-GNNVGSKHNVIT-NGLITPDGLAIDWLTEKL--YWTD-------S- 136 (357)
Q Consensus 69 ~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~-g~~~~~~~~~~~-~~~~~p~glavd~~~~~l--y~td-------~- 136 (357)
....|..+++++++..||.++.. .|..++++ ... ...+.. .....|..+++++.++.| |.++ .
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~--~v~~~~~~~~g~---~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 112 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK--KWSSFAVKSPTE---IVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYAN 112 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT--EEEEEEEEETTE---EEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc--eEEEEEECCCCC---EEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccc
Confidence 44578899999988889998876 67777765 221 121111 111248889999866643 4443 1
Q ss_pred ----CCCEEEEEEcC--CCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcC--CC
Q psy13635 137 ----ETNKLEVSSLD--GKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLE--GT 208 (357)
Q Consensus 137 ----~~~~I~~~~~~--g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~--g~ 208 (357)
..+.+..++++ |.....+.... ......|.++++++.++.||+++.+.++|.+.+.+ |+
T Consensus 113 ~~~~~~g~v~v~~~~~~g~~~~~~~~~~-------------~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~ 179 (365)
T 1jof_A 113 PFYKFAGYGNVFSVSETGKLEKNVQNYE-------------YQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGE 179 (365)
T ss_dssp EESSSCCEEEEEEECTTCCEEEEEEEEE-------------CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC
T ss_pred eeecCCceEEEEccCCCCcCcceEeeEE-------------eCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCC
Confidence 46677777664 44332221100 01124789999999888999999888899999986 43
Q ss_pred ceEE-Eec--CCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecC---CCce---EEE--eeCCC---C-------Cce
Q psy13635 209 HRKV-LVN--TDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLN---GGER---VLL--VKDRL---G-------WPN 267 (357)
Q Consensus 209 ~~~~-~~~--~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~d---g~~~---~~~--~~~~l---~-------~P~ 267 (357)
.... ... .....|++++++|.+.+||++.... +.|...+.+ |... ..+ +..+. . .|.
T Consensus 180 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~--~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 257 (365)
T 1jof_A 180 VELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAG--NRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRA 257 (365)
T ss_dssp EEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTT--TEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEE
T ss_pred EEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCC--CeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccc
Confidence 3211 111 1145799999999877999998764 477666654 3221 112 11111 2 588
Q ss_pred EEE-EecCCCEEEEEeCCCC-----eEEEEeCC--CCCeEE--EecCCCCceEEEEE-----ECCEEEEEeCCCCeEEEE
Q psy13635 268 GIT-LDVDNEKLYWCDAKTD-----KIEMIDFD--GNNRRE--LINENLPHVFGISL-----LGDYVYWTDWQRRSIDRV 332 (357)
Q Consensus 268 gia-id~~~~~lY~~d~~~~-----~I~~~~~d--G~~~~~--i~~~~~~~p~gia~-----~~~~ly~td~~~~~I~~~ 332 (357)
+++ +++++..||+++.+.+ .|..++++ |..... ........|.++++ ++++||+++..++.|..+
T Consensus 258 ~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~ 337 (365)
T 1jof_A 258 DVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIY 337 (365)
T ss_dssp EEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEE
T ss_pred cEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEE
Confidence 999 9988889999987655 78777764 432211 12222334555554 467999999877888777
Q ss_pred eCccCceeEEEe-cccCCceeee
Q psy13635 333 NKITGNDREVII-ERSCTGVTRR 354 (357)
Q Consensus 333 ~~~~g~~~~~i~-~~l~~p~~i~ 354 (357)
+.. ++.++.+. -..+.|.-+.
T Consensus 338 ~~~-~~~l~~~~~~~~~~p~~~~ 359 (365)
T 1jof_A 338 RWK-DEFLHRVARVRIPEPGFGM 359 (365)
T ss_dssp EEE-TTEEEEEEEEECCSTTEEE
T ss_pred EEc-hhhCceeeEEEcCCCccee
Confidence 653 33333332 2445554433
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.5e-09 Score=104.19 Aligned_cols=303 Identities=12% Similarity=0.082 Sum_probs=203.4
Q ss_pred EEEeecCCCCeEEEEEeCC-cEEEEEcC-CCCcceEeccCCCcEEEEEEE----ccCCEEEEEeCCCCeEEEEEcCCCCc
Q psy13635 32 WYALSHHVAAQMLLFATSK-DIRIANLS-RPLKPVTIIKDLEEGAAIDYY----YKKSMVCWTDHGTEMISCCTFDGNNV 105 (357)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~-~i~~~~~~-~~~~~~~~~~~~~~~~~i~~d----~~~~~ly~~d~~~~~I~~~~~~g~~~ 105 (357)
..++..++...++++++.. .|..+|+. .+.+....+.....|.+++++ +++..+|+++...+.+..++.....
T Consensus 199 p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~- 277 (567)
T 1qks_A 199 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE- 277 (567)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC-
T ss_pred ccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc-
Confidence 3466777778888888854 69999995 223344444455689999999 5888999999988999888866553
Q ss_pred ceeEEEEeC-C----------cCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCccc
Q psy13635 106 GSKHNVITN-G----------LITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIE 174 (357)
Q Consensus 106 ~~~~~~~~~-~----------~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~ 174 (357)
....+.. + ...+.++...+....++++....++|..++........+.... .
T Consensus 278 --~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~---------------~ 340 (567)
T 1qks_A 278 --PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS---------------A 340 (567)
T ss_dssp --EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE---------------C
T ss_pred --EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee---------------c
Confidence 2222221 1 1134567776666677777788899999987654321111111 1
Q ss_pred ccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecC--CCCCc-eEEE-EeCCCCEEEEEeCCCCCCeEEEEec
Q psy13635 175 VEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNT--DLVEP-RAIT-LSPAHGYLFWSDWNEKRPKIERSLL 250 (357)
Q Consensus 175 ~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~--~~~~P-~gia-vd~~~g~Ly~~d~~~~~~~I~~~~~ 250 (357)
-..|.++.+|+.++++|+++...++|.++|.........+.. ...+| +|.. ++|..|.+|++..... +.|..++.
T Consensus 341 ~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~-~~Vsvid~ 419 (567)
T 1qks_A 341 ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGD-DSVALIGT 419 (567)
T ss_dssp CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSS-SEEEEEEC
T ss_pred cccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCC-CeEEEecC
Confidence 136789999999999999999999999999886554433332 23344 4665 4777688887765332 58999998
Q ss_pred CCC-------ceEEEeeCCCCCceEEEEecCCCEEEEEeCC------CCeEEEEeCCCC-----CeE-EEec--------
Q psy13635 251 NGG-------ERVLLVKDRLGWPNGITLDVDNEKLYWCDAK------TDKIEMIDFDGN-----NRR-ELIN-------- 303 (357)
Q Consensus 251 dg~-------~~~~~~~~~l~~P~giaid~~~~~lY~~d~~------~~~I~~~~~dG~-----~~~-~i~~-------- 303 (357)
+.. .....+...-..+..|.+.+.+.+||++... .+.|..++.+.. ... .++.
T Consensus 420 ~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~ 499 (567)
T 1qks_A 420 DPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGIT 499 (567)
T ss_dssp CTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCC
T ss_pred CCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccC
Confidence 752 2222222222445668888888888887743 358999987533 221 2331
Q ss_pred CCCCceEEEEEE--CCEEEEEeCC----CCeEEEEeCccCceeEEEec-ccCCceee
Q psy13635 304 ENLPHVFGISLL--GDYVYWTDWQ----RRSIDRVNKITGNDREVIIE-RSCTGVTR 353 (357)
Q Consensus 304 ~~~~~p~gia~~--~~~ly~td~~----~~~I~~~~~~~g~~~~~i~~-~l~~p~~i 353 (357)
+....|..+.+. +.++|++.|. ++.|..+|..+++....|.. .+..|.|.
T Consensus 500 ~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~~~~~P~g~ 556 (567)
T 1qks_A 500 EGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDERLVTPTGK 556 (567)
T ss_dssp SSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCTTCCSEEEE
T ss_pred CCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCCCcccCCCee
Confidence 234678888886 5799999884 68999999889988887764 47777665
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.7e-10 Score=105.29 Aligned_cols=229 Identities=18% Similarity=0.156 Sum_probs=168.5
Q ss_pred EEEEe--CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCcee
Q psy13635 44 LLFAT--SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDG 121 (357)
Q Consensus 44 l~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~g 121 (357)
++++. ...|+.+|+.+.............+.++++++.++.+|++...++.|+..++.... ..........|.+
T Consensus 183 ~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~~~ 258 (433)
T 3bws_A 183 LWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL----EIRKTDKIGLPRG 258 (433)
T ss_dssp EEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE----EEEECCCCSEEEE
T ss_pred EEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc----EEEEecCCCCceE
Confidence 44444 35689999876444444444566899999999999999999888999999987653 2222233346899
Q ss_pred EEEEcCCCeEEEEeC-------CCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEe
Q psy13635 122 LAIDWLTEKLYWTDS-------ETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTD 194 (357)
Q Consensus 122 lavd~~~~~ly~td~-------~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td 194 (357)
+++++.++.||.+.. .++.|...++........... ...|.++++++.++.+|++.
T Consensus 259 ~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~l~~~~ 321 (433)
T 3bws_A 259 LLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP-----------------PGNKRHIVSGNTENKIYVSD 321 (433)
T ss_dssp EEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE-----------------EECEEEEEECSSTTEEEEEE
T ss_pred EEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC-----------------CCCcceEEECCCCCEEEEEe
Confidence 999988888888875 456899999875543322211 12678899998888999999
Q ss_pred CCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCC------------CCeEEEEecCCCceEEEeeCC
Q psy13635 195 TGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEK------------RPKIERSLLNGGERVLLVKDR 262 (357)
Q Consensus 195 ~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~------------~~~I~~~~~dg~~~~~~~~~~ 262 (357)
...++|...++++........ ....|.+++++|.+..||.+..... .+.|...+.........+..
T Consensus 322 ~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~- 399 (433)
T 3bws_A 322 MCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA- 399 (433)
T ss_dssp TTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-
T ss_pred cCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-
Confidence 988999999998654443333 3467999999998778999987532 14899999876655555443
Q ss_pred CCCceEEEEecCCCEEEEEeCCCCeEEEEeCCC
Q psy13635 263 LGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDG 295 (357)
Q Consensus 263 l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG 295 (357)
...|.++++++.+..||++....+.|...++++
T Consensus 400 ~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 400 GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 457999999988888999988788888887764
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=8.6e-12 Score=116.18 Aligned_cols=277 Identities=6% Similarity=-0.084 Sum_probs=183.0
Q ss_pred eEEEEEeCC------cEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeC---------CCCeEEEEEcCCCCcc
Q psy13635 42 QMLLFATSK------DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDH---------GTEMISCCTFDGNNVG 106 (357)
Q Consensus 42 ~~l~~~~~~------~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~---------~~~~I~~~~~~g~~~~ 106 (357)
..+|+++.. .+..+|++.. +..-.++....| +++++++...+|+++. .++.|..+++....
T Consensus 32 ~~~yV~~~~~~~~~d~vsvID~~t~-~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~-- 107 (368)
T 1mda_H 32 RRSHITLPAYFAGTTENWVSCAGCG-VTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL-- 107 (368)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTT-EEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC--
T ss_pred CeEEEECCccCCccceEEEEECCCC-eEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC--
Confidence 456777642 6788998773 333334444467 8999999999999984 35789999998775
Q ss_pred eeEEEEeC-C-----cCCceeEEEEcCCCeEEEEeCC-CCEEEE--EEcCCCceEEEEecCCCCcceeeeeccCcccccC
Q psy13635 107 SKHNVITN-G-----LITPDGLAIDWLTEKLYWTDSE-TNKLEV--SSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEH 177 (357)
Q Consensus 107 ~~~~~~~~-~-----~~~p~glavd~~~~~ly~td~~-~~~I~~--~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~ 177 (357)
...++... + ...|.++++++.++.||+++.. .+.+.+ +++.. ...+- -
T Consensus 108 vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~---------------------v 164 (368)
T 1mda_H 108 PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTK---------------------S 164 (368)
T ss_dssp EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEE---------------------C
T ss_pred EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEEE---------------------C
Confidence 22333222 1 2579999999999999999975 577877 65543 23221 1
Q ss_pred CceEEEeCCCCeEEEEeCCCCeEEEEEcCC----CceEEEe----cCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEe
Q psy13635 178 PDGVAVDWVARNLYWTDTGTDRIEVCRLEG----THRKVLV----NTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSL 249 (357)
Q Consensus 178 p~glavD~~~~~lY~td~~~~~I~~~~~~g----~~~~~~~----~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~ 249 (357)
|.+..+.+.+++.|++....+++..++.+. ....... -.-...|. + .+..+.+||+.. + .+..++
T Consensus 165 ~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~--~-~~~~~~~~~vs~--~--~V~viD 237 (368)
T 1mda_H 165 ASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA--Q-ANYPGMLVWAVA--S--SILQGD 237 (368)
T ss_dssp SSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE--E-ETTTTEEEECBS--S--CCEEEE
T ss_pred CCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc--c-cccCCEEEEEcC--C--EEEEEE
Confidence 111223445667888888888888888765 2211100 00124576 4 666788888886 3 888899
Q ss_pred cCCCceEEEeeCC---------CCCceE---EEEecCCCEEEEEeC---C-----CCeEEEEeCCCCCeEEEecCCCCce
Q psy13635 250 LNGGERVLLVKDR---------LGWPNG---ITLDVDNEKLYWCDA---K-----TDKIEMIDFDGNNRRELINENLPHV 309 (357)
Q Consensus 250 ~dg~~~~~~~~~~---------l~~P~g---iaid~~~~~lY~~d~---~-----~~~I~~~~~dG~~~~~i~~~~~~~p 309 (357)
..+.....+..-. ...|.| ++++++++++|++.. + .+.+..+|........-+. ....|
T Consensus 238 ~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~-vg~~p 316 (368)
T 1mda_H 238 IPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDS 316 (368)
T ss_dssp CCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEE
T ss_pred CCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE-CCCCc
Confidence 8765444332111 123555 889999999999865 3 3466788886654322221 12379
Q ss_pred EEEEEE--CCEEEEEeC-CCCeEEEEeCccCceeEEEecccCCceeee
Q psy13635 310 FGISLL--GDYVYWTDW-QRRSIDRVNKITGNDREVIIERSCTGVTRR 354 (357)
Q Consensus 310 ~gia~~--~~~ly~td~-~~~~I~~~~~~~g~~~~~i~~~l~~p~~i~ 354 (357)
.||++. +.++|++.. ..+.|..+|..+++....|.-+ ..|.++.
T Consensus 317 ~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg-~~P~~i~ 363 (368)
T 1mda_H 317 DAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD-KGPESLS 363 (368)
T ss_dssp CEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC-SCCCEEE
T ss_pred ceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC-CCCCEEE
Confidence 999996 346999988 6899999999888888777654 5777764
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.3e-11 Score=116.57 Aligned_cols=165 Identities=16% Similarity=0.161 Sum_probs=118.4
Q ss_pred EEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcC-CCceEEEEec-CCCCcceeeeeccCcccccCCceEEEeCC
Q psy13635 109 HNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD-GKKRKVLYWE-DIDQPRAIASYKLPTIEVEHPDGVAVDWV 186 (357)
Q Consensus 109 ~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~-g~~~~~~~~~-~~~~p~~i~~~~~~~~~~~~p~glavD~~ 186 (357)
.+++..++..|.+|++++ .+.||+++...++|.+++.+ |....+.... .+.. ......+.|||+++.
T Consensus 19 ~~~~a~~l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~----------~~g~~Gllgia~~Pd 87 (454)
T 1cru_A 19 KKVILSNLNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVND----------ADGQNGLLGFAFHPD 87 (454)
T ss_dssp EEEEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCC----------TTSSCSEEEEEECTT
T ss_pred EEEEECCCCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccc----------cCCCCceeEEEECCC
Confidence 667778999999999997 67899999988899999875 4433222111 1100 012345679999986
Q ss_pred ---CCeEEEEeCC------------CCeEEEEEcCCC-----ceEEEec----CCCCCceEEEEeCCCCEEEEEeCCC--
Q psy13635 187 ---ARNLYWTDTG------------TDRIEVCRLEGT-----HRKVLVN----TDLVEPRAITLSPAHGYLFWSDWNE-- 240 (357)
Q Consensus 187 ---~~~lY~td~~------------~~~I~~~~~~g~-----~~~~~~~----~~~~~P~giavd~~~g~Ly~~d~~~-- 240 (357)
++.||++... ..+|.++..++. ..++++. .....+.+|+++|+ |+||++....
T Consensus 88 f~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pD-G~Lyv~~Gd~~~ 166 (454)
T 1cru_A 88 FKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPD-QKIYYTIGDQGR 166 (454)
T ss_dssp TTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTT-SCEEEEECCTTT
T ss_pred cCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCC-CeEEEEECCCCC
Confidence 8999999853 358999887642 2233432 23456999999985 8999995421
Q ss_pred ----------------------------CCCeEEEEecCCCc----------eEEEeeCCCCCceEEEEecCCCEEEEEe
Q psy13635 241 ----------------------------KRPKIERSLLNGGE----------RVLLVKDRLGWPNGITLDVDNEKLYWCD 282 (357)
Q Consensus 241 ----------------------------~~~~I~~~~~dg~~----------~~~~~~~~l~~P~giaid~~~~~lY~~d 282 (357)
..++|.|++.||+. ..+++..++.+|.|+++|+ ++.||++|
T Consensus 167 ~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp-~G~L~~~d 245 (454)
T 1cru_A 167 NQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTP-NGKLLQSE 245 (454)
T ss_dssp TSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECT-TSCEEEEE
T ss_pred CCccccccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECC-CCCEEEEe
Confidence 13789999999972 3456678899999999997 79999999
Q ss_pred CCCC
Q psy13635 283 AKTD 286 (357)
Q Consensus 283 ~~~~ 286 (357)
.+..
T Consensus 246 ~g~~ 249 (454)
T 1cru_A 246 QGPN 249 (454)
T ss_dssp ECSS
T ss_pred cCCC
Confidence 7543
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-09 Score=96.18 Aligned_cols=192 Identities=13% Similarity=0.085 Sum_probs=138.8
Q ss_pred CcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCc
Q psy13635 71 EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKK 150 (357)
Q Consensus 71 ~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~ 150 (357)
....|+.|+ ++.||.+....+.|.++++...... ..+ ...-...+|++++ +++||.++...+++.+++.....
T Consensus 55 ~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~--~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~ 127 (268)
T 3nok_A 55 AFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPV--WME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQ 127 (268)
T ss_dssp CCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCS--EEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTE
T ss_pred cccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEE--eEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCc
Confidence 345899997 6899999999999999999877532 333 3333345778886 78999999999999999986544
Q ss_pred eEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCce-EEEecC----CCCCceEEE
Q psy13635 151 RKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHR-KVLVNT----DLVEPRAIT 225 (357)
Q Consensus 151 ~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~-~~~~~~----~~~~P~gia 225 (357)
...-+... ..+.||+-| +++||.++ +.++|..+|+..... ..+.-. ....++.+.
T Consensus 128 ~~~ti~~~-----------------~eGwGLt~D--g~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe 187 (268)
T 3nok_A 128 RERTTRYS-----------------GEGWGLCYW--NGKLVRSD-GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELE 187 (268)
T ss_dssp EEEEEECS-----------------SCCCCEEEE--TTEEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EEEEEeCC-----------------CceeEEecC--CCEEEEEC-CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccE
Confidence 32222211 134567766 78999999 578999999886433 222211 234567777
Q ss_pred EeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeC-------------CCCCceEEEEecCCCEEEEEeCCCCeEEEEe
Q psy13635 226 LSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKD-------------RLGWPNGITLDVDNEKLYWCDAKTDKIEMID 292 (357)
Q Consensus 226 vd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~-------------~l~~P~giaid~~~~~lY~~d~~~~~I~~~~ 292 (357)
.. +|+||...+..+ .|.++++........+.- ...-|+|||+|+.+++||+|...=.+++.+.
T Consensus 188 ~~--dG~lyanvw~s~--~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev~ 263 (268)
T 3nok_A 188 CA--NGVIYANIWHSS--DVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEVR 263 (268)
T ss_dssp EE--TTEEEEEETTCS--EEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEEE
T ss_pred Ee--CCEEEEEECCCC--eEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEEE
Confidence 66 689999998854 999999976655544432 1246899999999999999998878888876
Q ss_pred C
Q psy13635 293 F 293 (357)
Q Consensus 293 ~ 293 (357)
+
T Consensus 264 ~ 264 (268)
T 3nok_A 264 L 264 (268)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.9e-09 Score=99.48 Aligned_cols=262 Identities=9% Similarity=0.033 Sum_probs=164.6
Q ss_pred EeecCCCCeEEEEEeC-----------CcEEEEEcCCCCcceE-ecc-C-----CCcEEEEEEEccCCEEEEEeCC-CCe
Q psy13635 34 ALSHHVAAQMLLFATS-----------KDIRIANLSRPLKPVT-IIK-D-----LEEGAAIDYYYKKSMVCWTDHG-TEM 94 (357)
Q Consensus 34 ~~~~~~~~~~l~~~~~-----------~~i~~~~~~~~~~~~~-~~~-~-----~~~~~~i~~d~~~~~ly~~d~~-~~~ 94 (357)
.++.++...++|+++. +.|..+|......... ... . ...|.++++++++.+||+++.. .+.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 6677777888999872 4588999865222221 121 0 2468899999999999999875 688
Q ss_pred EEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecC-CCCcceeeeeccCcc
Q psy13635 95 ISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWED-IDQPRAIASYKLPTI 173 (357)
Q Consensus 95 I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~-~~~p~~i~~~~~~~~ 173 (357)
|..++ .+.. .... -+..|.++.+.+.++..|++...++++..++..|+......... ...+..+.
T Consensus 150 v~viD-~t~~---~~~~---~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~------- 215 (373)
T 2mad_H 150 VGLVV-QGGS---SDDQ---LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLL------- 215 (373)
T ss_pred EEEEE-CCCC---EEeE---EcCCCceEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCccee-------
Confidence 99998 6553 1111 02234456666667789999888889988888444332211000 00000000
Q ss_pred cccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEec---------CCCCCceE---EEEeCCCCEEEEEeCCC-
Q psy13635 174 EVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVN---------TDLVEPRA---ITLSPAHGYLFWSDWNE- 240 (357)
Q Consensus 174 ~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~---------~~~~~P~g---iavd~~~g~Ly~~d~~~- 240 (357)
...++++.++.+||... .+.+.+++..+.....+.. .....|.| +++++.+++||++....
T Consensus 216 -----~~~~~~~~~~~~~~~~~-~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~ 289 (373)
T 2mad_H 216 -----TQPAQANKSGRIVWPVY-SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQS 289 (373)
T ss_pred -----ecceeEecCCEEEEEcC-CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCC
Confidence 11233444566666653 4578888886543322111 01124555 89999999999986421
Q ss_pred ------CCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCC-EEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEE
Q psy13635 241 ------KRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNE-KLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGIS 313 (357)
Q Consensus 241 ------~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~-~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia 313 (357)
....|..++........-+..+ ..|.++++++++. .+|++....+.|..+|.........+..-...|.+|.
T Consensus 290 ~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i~~vG~~P~~~~ 368 (373)
T 2mad_H 290 AWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLS 368 (373)
T ss_pred cccccCCCCeEEEEECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeeecCCCCCCcEEE
Confidence 1248999999876554333332 3699999998777 7888887889999999876555433223456898887
Q ss_pred EEC
Q psy13635 314 LLG 316 (357)
Q Consensus 314 ~~~ 316 (357)
..+
T Consensus 369 ~~~ 371 (373)
T 2mad_H 369 VMN 371 (373)
T ss_pred Ecc
Confidence 653
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-09 Score=96.09 Aligned_cols=192 Identities=14% Similarity=0.119 Sum_probs=136.2
Q ss_pred CcEEEEEEEccCCEEEEEeCCCC--eEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCC
Q psy13635 71 EEGAAIDYYYKKSMVCWTDHGTE--MISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG 148 (357)
Q Consensus 71 ~~~~~i~~d~~~~~ly~~d~~~~--~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g 148 (357)
....|+.|+ ++.||.+....+ .|.++++..... ..++....-...+|++++ +++||.++...+++.+++.+.
T Consensus 43 ~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv--~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t 116 (262)
T 3nol_A 43 AFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKT--LQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRN 116 (262)
T ss_dssp CEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCE--EEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTT
T ss_pred cccceEEEE--CCEEEEECCCCCCceEEEEECCCCcE--EEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECcc
Confidence 345899998 579999976544 899999987642 122322222234778887 789999999999999999865
Q ss_pred Cce-EEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCc-eEEEec----CCCCCce
Q psy13635 149 KKR-KVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTH-RKVLVN----TDLVEPR 222 (357)
Q Consensus 149 ~~~-~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~-~~~~~~----~~~~~P~ 222 (357)
... ..+- .+ ..+.|++-| +++||.+|. .++|..+|+.... ...+.- .....++
T Consensus 117 ~~~~~ti~-~~-----------------~eG~glt~d--g~~L~~SdG-s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lN 175 (262)
T 3nol_A 117 LRQVRSFN-YD-----------------GEGWGLTHN--DQYLIMSDG-TPVLRFLDPESLTPVRTITVTAHGEELPELN 175 (262)
T ss_dssp CCEEEEEE-CS-----------------SCCCCEEEC--SSCEEECCS-SSEEEEECTTTCSEEEEEECEETTEECCCEE
T ss_pred CcEEEEEE-CC-----------------CCceEEecC--CCEEEEECC-CCeEEEEcCCCCeEEEEEEeccCCccccccc
Confidence 443 3332 11 134566655 789999995 6899999988533 333221 1235566
Q ss_pred EEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeC-C-----------CCCceEEEEecCCCEEEEEeCCCCeEEE
Q psy13635 223 AITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKD-R-----------LGWPNGITLDVDNEKLYWCDAKTDKIEM 290 (357)
Q Consensus 223 giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~-~-----------l~~P~giaid~~~~~lY~~d~~~~~I~~ 290 (357)
.+... +|+||...+..+ .|.++++........+.- + ..-|+|||+|+.+++||++-..=.+++.
T Consensus 176 ELe~~--~G~lyan~w~~~--~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~e 251 (262)
T 3nol_A 176 ELEWV--DGEIFANVWQTN--KIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFE 251 (262)
T ss_dssp EEEEE--TTEEEEEETTSS--EEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred eeEEE--CCEEEEEEccCC--eEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEE
Confidence 77776 689999999854 999999976666544432 1 2468999999999999999988888888
Q ss_pred EeC
Q psy13635 291 IDF 293 (357)
Q Consensus 291 ~~~ 293 (357)
+.+
T Consensus 252 v~~ 254 (262)
T 3nol_A 252 ITL 254 (262)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=3e-10 Score=105.45 Aligned_cols=251 Identities=14% Similarity=0.023 Sum_probs=155.8
Q ss_pred EeecCCCCeEEEEEeCCcEEEEEcC-CCCcceEec--cCCCcEEEEEEEccCCEEE--EEe------C------CCCeEE
Q psy13635 34 ALSHHVAAQMLLFATSKDIRIANLS-RPLKPVTII--KDLEEGAAIDYYYKKSMVC--WTD------H------GTEMIS 96 (357)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~i~~~~~~-~~~~~~~~~--~~~~~~~~i~~d~~~~~ly--~~d------~------~~~~I~ 96 (357)
.++.++...+|+.++...|..++++ . .+..... +....|..++++++++.|| .++ . .++.+.
T Consensus 44 ~~a~spdg~~l~~~~~~~v~~~~~~~~-g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~ 122 (365)
T 1jof_A 44 WMTFDHERKNIYGAAMKKWSSFAVKSP-TEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGN 122 (365)
T ss_dssp EEEECTTSSEEEEEEBTEEEEEEEEET-TEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEE
T ss_pred EEEECCCCCEEEEEccceEEEEEECCC-CCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEE
Confidence 3445556667887777678888874 3 2222221 1112466678888666433 343 1 355666
Q ss_pred EEEcC--CCCcceeEEEEe-CCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcC-CCceEEEEecCCCCcceeeeeccCc
Q psy13635 97 CCTFD--GNNVGSKHNVIT-NGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD-GKKRKVLYWEDIDQPRAIASYKLPT 172 (357)
Q Consensus 97 ~~~~~--g~~~~~~~~~~~-~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~-g~~~~~~~~~~~~~p~~i~~~~~~~ 172 (357)
..+++ |.. ........ .....|.++++++.++.||+++.+.++|.+++++ ......+..... .
T Consensus 123 v~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~------------~ 189 (365)
T 1jof_A 123 VFSVSETGKL-EKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDA------------P 189 (365)
T ss_dssp EEEECTTCCE-EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEEC------------S
T ss_pred EEccCCCCcC-cceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEec------------C
Confidence 66654 432 10111111 2346799999999888899999888999999986 333222211000 0
Q ss_pred ccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcC---CCce---EEEe--cCCC---C-------CceEEE-EeCCCCEE
Q psy13635 173 IEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLE---GTHR---KVLV--NTDL---V-------EPRAIT-LSPAHGYL 233 (357)
Q Consensus 173 ~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~---g~~~---~~~~--~~~~---~-------~P~gia-vd~~~g~L 233 (357)
.....|.++++++.++.||+++...+.|.+.+.+ |+.. ..+. .... . .|.+++ ++|.+.+|
T Consensus 190 ~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l 269 (365)
T 1jof_A 190 DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM 269 (365)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred CCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEE
Confidence 0123689999999888999999887888887665 4332 1121 1111 2 489999 99987799
Q ss_pred EEEeCCCC---CCeEEEEecC--CCceEE--EeeCCCCCceEEEEec---CCCEEEEEeCCCCeEEEEeCCCCCe
Q psy13635 234 FWSDWNEK---RPKIERSLLN--GGERVL--LVKDRLGWPNGITLDV---DNEKLYWCDAKTDKIEMIDFDGNNR 298 (357)
Q Consensus 234 y~~d~~~~---~~~I~~~~~d--g~~~~~--~~~~~l~~P~giaid~---~~~~lY~~d~~~~~I~~~~~dG~~~ 298 (357)
|+++.+.+ .+.|...+++ |..... ........|.++++++ ++++||+++...+.|..++.++...
T Consensus 270 ~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~l 344 (365)
T 1jof_A 270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFL 344 (365)
T ss_dssp EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEE
T ss_pred EEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhhC
Confidence 99987532 0166666664 332221 2222345689999998 6889999998888888888776633
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.6e-09 Score=92.82 Aligned_cols=196 Identities=13% Similarity=0.110 Sum_probs=137.8
Q ss_pred CCCcEEEEEEEccCCEEEEEeCCC--CeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEc
Q psy13635 69 DLEEGAAIDYYYKKSMVCWTDHGT--EMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSL 146 (357)
Q Consensus 69 ~~~~~~~i~~d~~~~~ly~~d~~~--~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~ 146 (357)
.-....|+.|+. +.||.+.... ..|.++++..... ...+....-...+|++++ +++||..+..++++.+++.
T Consensus 19 ~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv--~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~ 92 (243)
T 3mbr_X 19 TTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRI--LQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDL 92 (243)
T ss_dssp TTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCE--EEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEET
T ss_pred CccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCE--EEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEEC
Confidence 344678999984 8999997654 5899999987741 122322333345777877 7999999999999999998
Q ss_pred CCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCce-EEEecC----CCCCc
Q psy13635 147 DGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHR-KVLVNT----DLVEP 221 (357)
Q Consensus 147 ~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~-~~~~~~----~~~~P 221 (357)
+......-+..+ ..+.||+- .+++||++|. .++|..+|+..... ..+.-. .+..+
T Consensus 93 ~tl~~~~ti~~~-----------------~~Gwglt~--dg~~L~vSdg-s~~l~~iDp~t~~~~~~I~V~~~g~~~~~l 152 (243)
T 3mbr_X 93 ATLTPRARFRYP-----------------GEGWALTS--DDSHLYMSDG-TAVIRKLDPDTLQQVGSIKVTAGGRPLDNL 152 (243)
T ss_dssp TTTEEEEEEECS-----------------SCCCEEEE--CSSCEEEECS-SSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred CcCcEEEEEeCC-----------------CCceEEee--CCCEEEEECC-CCeEEEEeCCCCeEEEEEEEccCCcccccc
Confidence 654433222211 13455554 4789999995 78999999876433 222111 23456
Q ss_pred eEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEee-C------------CCCCceEEEEecCCCEEEEEeCCCCeE
Q psy13635 222 RAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVK-D------------RLGWPNGITLDVDNEKLYWCDAKTDKI 288 (357)
Q Consensus 222 ~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~-~------------~l~~P~giaid~~~~~lY~~d~~~~~I 288 (357)
+.+... +|+||...+..+ .|.++++........+. . ...-|+|||.|+.+++||+|...=.++
T Consensus 153 NeLe~~--~G~lyanvw~s~--~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~ 228 (243)
T 3mbr_X 153 NELEWV--NGELLANVWLTS--RIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPML 228 (243)
T ss_dssp EEEEEE--TTEEEEEETTTT--EEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEE
T ss_pred eeeEEe--CCEEEEEECCCC--eEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcE
Confidence 666655 699999998854 99999997666554443 1 123689999999999999999888888
Q ss_pred EEEeCC
Q psy13635 289 EMIDFD 294 (357)
Q Consensus 289 ~~~~~d 294 (357)
+.+.+.
T Consensus 229 ~~v~~~ 234 (243)
T 3mbr_X 229 YEIRLT 234 (243)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 888764
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.4e-09 Score=97.34 Aligned_cols=234 Identities=11% Similarity=0.048 Sum_probs=163.6
Q ss_pred CCEEEEEeCCCCeEEEEEc-CCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCC
Q psy13635 82 KSMVCWTDHGTEMISCCTF-DGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDID 160 (357)
Q Consensus 82 ~~~ly~~d~~~~~I~~~~~-~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~ 160 (357)
.+++++++..++.|+.++. +|.. ..+.-......+.++++++ ++++|++ ..+.|..++.+|+..-.+-...
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~---~w~~~~~~~~~~~~~~~~p-dG~ilvs--~~~~V~~~d~~G~~~W~~~~~~-- 75 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEI---VWEYPLEKGWECNSVAATK-AGEILFS--YSKGAKMITRDGRELWNIAAPA-- 75 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEE---EEEEECCTTCCCCEEEECT-TSCEEEE--CBSEEEEECTTSCEEEEEECCT--
T ss_pred CCcEEEeeCCCCEEEEEECCCCeE---EEEeCCCccCCCcCeEECC-CCCEEEe--CCCCEEEECCCCCEEEEEcCCC--
Confidence 4677888888888888887 4432 1223222224688999996 5677774 3678999999887654442110
Q ss_pred CcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC-CCeEEEEEcCCCceEEEecC-----CCCCceEEEEeCCCCEEE
Q psy13635 161 QPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG-TDRIEVCRLEGTHRKVLVNT-----DLVEPRAITLSPAHGYLF 234 (357)
Q Consensus 161 ~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~-~~~I~~~~~~g~~~~~~~~~-----~~~~P~giavd~~~g~Ly 234 (357)
. ..+.+.++. .+|++++++.. .++|..++++|+....+... ....|.++++++ +|.++
T Consensus 76 ---~-----------~~~~~~~~~-~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~l 139 (276)
T 3no2_A 76 ---G-----------CEMQTARIL-PDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNK-KGNYL 139 (276)
T ss_dssp ---T-----------CEEEEEEEC-TTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECT-TSCEE
T ss_pred ---C-----------ccccccEEC-CCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECC-CCCEE
Confidence 0 023345555 46678888877 77999999999876554321 123577888887 47788
Q ss_pred EEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCC-CCCeEEEecC-----CCCc
Q psy13635 235 WSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFD-GNNRRELINE-----NLPH 308 (357)
Q Consensus 235 ~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~d-G~~~~~i~~~-----~~~~ 308 (357)
+++... ++|...+.+|......-.. ..|.++++. .++++++++...++|..++++ |+..-.+... .+..
T Consensus 140 v~~~~~--~~v~~~d~~G~~~w~~~~~--~~~~~~~~~-~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~ 214 (276)
T 3no2_A 140 VPLFAT--SEVREIAPNGQLLNSVKLS--GTPFSSAFL-DNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFF 214 (276)
T ss_dssp EEETTT--TEEEEECTTSCEEEEEECS--SCCCEEEEC-TTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSE
T ss_pred EEecCC--CEEEEECCCCCEEEEEECC--CCccceeEc-CCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccc
Confidence 888874 6999999997766555332 578888887 678899999888999999998 8766555432 3556
Q ss_pred eEEEEEE-CCEEEEEeCC----------CCeEEEEeCccCceeEEEec
Q psy13635 309 VFGISLL-GDYVYWTDWQ----------RRSIDRVNKITGNDREVIIE 345 (357)
Q Consensus 309 p~gia~~-~~~ly~td~~----------~~~I~~~~~~~g~~~~~i~~ 345 (357)
|.++++. +|.+|++++. ..+++.+++ +|+.+-...+
T Consensus 215 ~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~-~g~~~W~~~~ 261 (276)
T 3no2_A 215 VAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDS-EGKVVWQLND 261 (276)
T ss_dssp EEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECT-TSBEEEEECC
T ss_pred cccceEcCCCCEEEEeccCccccccccCCceEEEECC-CCCEEEEecC
Confidence 8999987 7999999962 346899988 7887655533
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-08 Score=100.08 Aligned_cols=283 Identities=9% Similarity=0.001 Sum_probs=182.9
Q ss_pred CeEEEEEe--CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcC-CCCcceeEEEEeCCcC
Q psy13635 41 AQMLLFAT--SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFD-GNNVGSKHNVITNGLI 117 (357)
Q Consensus 41 ~~~l~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~-g~~~~~~~~~~~~~~~ 117 (357)
...+++++ .+.|..+|.++. +....++....|+++.+++++..+|+++. ++.|..+++. .+. .....+..+ .
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~-~v~~~i~~g~~p~~v~~SpDGr~lyv~~~-dg~V~viD~~~~t~--~~v~~i~~G-~ 240 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTY-EIKTVLDTGYAVHISRLSASGRYLFVIGR-DGKVNMIDLWMKEP--TTVAEIKIG-S 240 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTC-CEEEEEECSSCEEEEEECTTSCEEEEEET-TSEEEEEETTSSSC--CEEEEEECC-S
T ss_pred CceEEEEeCCCCeEEEEECCCC-eEEEEEeCCCCccceEECCCCCEEEEEcC-CCeEEEEECCCCCC--cEeEEEecC-C
Confidence 34566666 357999999763 33333445557899999999999999874 5789999995 222 123333333 3
Q ss_pred CceeEEEE----cCCCeEEEEeCCCCEEEEEEcCCCceEEEEecC-CC-CcceeeeeccCcccccCCceEEEeCCCCeEE
Q psy13635 118 TPDGLAID----WLTEKLYWTDSETNKLEVSSLDGKKRKVLYWED-ID-QPRAIASYKLPTIEVEHPDGVAVDWVARNLY 191 (357)
Q Consensus 118 ~p~glavd----~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~-~~-~p~~i~~~~~~~~~~~~p~glavD~~~~~lY 191 (357)
.|.+++++ +.++.+|+++...++|.+++.........+... .. ..... ..-..+.++...+.+...+
T Consensus 241 ~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~-------~p~~rva~i~~s~~~~~~v 313 (567)
T 1qks_A 241 EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY-------HPEPRVAAILASHYRPEFI 313 (567)
T ss_dssp EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCE-------ESCCCEEEEEECSSSSEEE
T ss_pred CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccc-------cCCCceEEEEEcCCCCEEE
Confidence 69999999 588899999999999999986554333223211 00 00000 0001234666666667778
Q ss_pred EEeCCCCeEEEEEcCCCce-EEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeC-C-CCCc-e
Q psy13635 192 WTDTGTDRIEVCRLEGTHR-KVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKD-R-LGWP-N 267 (357)
Q Consensus 192 ~td~~~~~I~~~~~~g~~~-~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~-~-l~~P-~ 267 (357)
++....++|..++...... .+..-..-..|.++.++|.+.++|+++... .+|..++.........+.. + ..+| .
T Consensus 314 v~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~s--n~V~ViD~~t~kl~~~i~vgg~~Phpg~ 391 (567)
T 1qks_A 314 VNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANAR--NKLVVIDTKEGKLVAIEDTGGQTPHPGR 391 (567)
T ss_dssp EEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGG--TEEEEEETTTTEEEEEEECSSSSBCCTT
T ss_pred EEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCC--CeEEEEECCCCcEEEEEeccCcCCCCcc
Confidence 8888888999998765421 111112335799999999888899999875 4999999987655555544 2 2334 3
Q ss_pred EEE-EecCCCEEEEEe-CCCCeEEEEeCCCC-------CeEEEecCCCCceEEEEEE--CCEEEEEeCC------CCeEE
Q psy13635 268 GIT-LDVDNEKLYWCD-AKTDKIEMIDFDGN-------NRRELINENLPHVFGISLL--GDYVYWTDWQ------RRSID 330 (357)
Q Consensus 268 gia-id~~~~~lY~~d-~~~~~I~~~~~dG~-------~~~~i~~~~~~~p~gia~~--~~~ly~td~~------~~~I~ 330 (357)
|.. +++..+.+|++. .+.+.|..++.+.. .....+..+...+..|... +.++|++... +++|.
T Consensus 392 g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~ 471 (567)
T 1qks_A 392 GANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVA 471 (567)
T ss_dssp CEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEE
T ss_pred ceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEE
Confidence 665 465568888765 46689999998752 2222222233455667665 4688887743 35899
Q ss_pred EEeCccC
Q psy13635 331 RVNKITG 337 (357)
Q Consensus 331 ~~~~~~g 337 (357)
.++..+.
T Consensus 472 v~d~~~~ 478 (567)
T 1qks_A 472 VFDIKAM 478 (567)
T ss_dssp EEEGGGC
T ss_pred EEECCcc
Confidence 9997655
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.30 E-value=5.8e-09 Score=94.98 Aligned_cols=246 Identities=11% Similarity=0.007 Sum_probs=159.6
Q ss_pred EEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEe-CCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEE
Q psy13635 75 AIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT-NGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKV 153 (357)
Q Consensus 75 ~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~-~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~ 153 (357)
|+++. .++.+|++...++.|+.+++.+.. ....+. .....|.++++++.++.+|+++...+.|.+++++......
T Consensus 4 g~~~~-~~~~~~v~~~~~~~v~~~d~~~~~---~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~ 79 (349)
T 1jmx_B 4 GPALK-AGHEYMIVTNYPNNLHVVDVASDT---VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF 79 (349)
T ss_dssp CCCCC-TTCEEEEEEETTTEEEEEETTTTE---EEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred ccccc-CCCEEEEEeCCCCeEEEEECCCCc---EEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEE
Confidence 34444 367889998888999999987653 122222 2223699999998888899999889999999987654433
Q ss_pred EEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC-----------CCeEEEEEcCCCc-e--EEEecCCCC
Q psy13635 154 LYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG-----------TDRIEVCRLEGTH-R--KVLVNTDLV 219 (357)
Q Consensus 154 ~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~-----------~~~I~~~~~~g~~-~--~~~~~~~~~ 219 (357)
.+.... .| ......|.++++++.++.||++... .+.|.+.++.... . ..... .-.
T Consensus 80 ~~~~~~-~~---------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~ 148 (349)
T 1jmx_B 80 HANLSS-VP---------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPR 148 (349)
T ss_dssp EEESCC-ST---------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCS
T ss_pred EEEccc-cc---------ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCC
Confidence 222110 00 0002358999999988899998854 4689999987522 1 11222 223
Q ss_pred CceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCC-------------------------------------
Q psy13635 220 EPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDR------------------------------------- 262 (357)
Q Consensus 220 ~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~------------------------------------- 262 (357)
.+.+++++|. |++|++. ..|...+.........+...
T Consensus 149 ~~~~~~~s~d-g~l~~~~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 222 (349)
T 1jmx_B 149 QVYLMRAADD-GSLYVAG-----PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDD 222 (349)
T ss_dssp SCCCEEECTT-SCEEEES-----SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC---
T ss_pred cccceeECCC-CcEEEcc-----CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCC
Confidence 6888999986 4587752 24777776543332222111
Q ss_pred -------------------------------CCCceEEEEec-CCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceE
Q psy13635 263 -------------------------------LGWPNGITLDV-DNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVF 310 (357)
Q Consensus 263 -------------------------------l~~P~giaid~-~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~ 310 (357)
-..|.++++++ .++.||++ .+.|..+++........+. ....|.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~~~~~~~~~-~~~~~~ 298 (349)
T 1jmx_B 223 KQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQRKLIKAAN-LDHTYY 298 (349)
T ss_dssp ----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---ESEEEEEETTTTEEEEEEE-CSSCCC
T ss_pred cCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE---cCeEEEEECccCeEEEEEc-CCCCcc
Confidence 01355666767 77788888 6789999987654433332 234578
Q ss_pred EEEEE--CCEEEEEeCCCCeEEEEeCccCceeEEEecc
Q psy13635 311 GISLL--GDYVYWTDWQRRSIDRVNKITGNDREVIIER 346 (357)
Q Consensus 311 gia~~--~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~ 346 (357)
++++. ++.||++ ...+.|..++..+++....+..+
T Consensus 299 ~~~~s~dg~~l~~~-~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 299 CVAFDKKGDKLYLG-GTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEECSSSSCEEEE-SBSSEEEEEETTTTEEEEEEECS
T ss_pred ceEECCCCCEEEEe-cCCCeEEEEeccccceeeeeecC
Confidence 88886 4578886 45589999998788877776544
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-08 Score=96.40 Aligned_cols=241 Identities=11% Similarity=-0.002 Sum_probs=158.7
Q ss_pred ccCCEEEEEeCCCCeEEEEEcCCCCc-ceeEEEE-------eCCcCCceeEEEEcCCCeEEEEeCCC------CEEEEEE
Q psy13635 80 YKKSMVCWTDHGTEMISCCTFDGNNV-GSKHNVI-------TNGLITPDGLAIDWLTEKLYWTDSET------NKLEVSS 145 (357)
Q Consensus 80 ~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~-------~~~~~~p~glavd~~~~~ly~td~~~------~~I~~~~ 145 (357)
....+||++...+++|+.++...... .....++ ..+...|.++.+-+. + ||++..++ +.|..++
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pd-G-i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPD-A-IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSS-C-EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCC-e-EEEEcCCCcCCCCCCeEEEEE
Confidence 56789999999999999999854321 1122333 235668999999864 4 99988765 7898888
Q ss_pred cCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC------------------CCeEEEEEcCC
Q psy13635 146 LDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG------------------TDRIEVCRLEG 207 (357)
Q Consensus 146 ~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~------------------~~~I~~~~~~g 207 (357)
............+ ......+.++-+.+..+.+|.++++ .++|.+.+++.
T Consensus 171 ~~T~~v~~~~~~~-------------~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~ 237 (462)
T 2ece_A 171 HYSFEPLGKWEID-------------RGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK 237 (462)
T ss_dssp TTTCCEEEECCSB-------------CTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT
T ss_pred CCCCeEEEEEccC-------------CCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC
Confidence 7754433222111 0011124456667778889988854 68999999986
Q ss_pred CceEEEecCC--CCCceEEEE--eCCCCEEEEEeC-----CCCCCeEEEEecCCCceE--EEe--eC-----C-------
Q psy13635 208 THRKVLVNTD--LVEPRAITL--SPAHGYLFWSDW-----NEKRPKIERSLLNGGERV--LLV--KD-----R------- 262 (357)
Q Consensus 208 ~~~~~~~~~~--~~~P~giav--d~~~g~Ly~~d~-----~~~~~~I~~~~~dg~~~~--~~~--~~-----~------- 262 (357)
......+..+ ...|..|.+ +|....+|++.. -. +.|.....++..-. .++ .. .
T Consensus 238 ~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Ls--s~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~ 315 (462)
T 2ece_A 238 RKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLS--SSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKP 315 (462)
T ss_dssp TEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCC--EEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGG
T ss_pred CcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCC--ceEEEEEecCCceeEEEEEeCCCccccccccccccc
Confidence 5333222221 246888877 998889999987 53 47877666543211 111 11 0
Q ss_pred ----CCCceEEEEecCCCEEEEEeCCCCeEEEEeCC-CCCeEEE---ecCCC-------------CceEEEEEE--CCEE
Q psy13635 263 ----LGWPNGITLDVDNEKLYWCDAKTDKIEMIDFD-GNNRREL---INENL-------------PHVFGISLL--GDYV 319 (357)
Q Consensus 263 ----l~~P~giaid~~~~~lY~~d~~~~~I~~~~~d-G~~~~~i---~~~~~-------------~~p~gia~~--~~~l 319 (357)
-..|.+|.+++++..||+++.+.+.|..++.+ ....+.+ -.++. .+|.++++. +.+|
T Consensus 316 f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~L 395 (462)
T 2ece_A 316 FKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRV 395 (462)
T ss_dssp GTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEE
T ss_pred cccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEE
Confidence 24689999999999999999999999999974 3222222 11111 269999986 6899
Q ss_pred EEEe--------C-----CCCeEEEE--eCccC
Q psy13635 320 YWTD--------W-----QRRSIDRV--NKITG 337 (357)
Q Consensus 320 y~td--------~-----~~~~I~~~--~~~~g 337 (357)
|+++ . .+..++++ +..+|
T Consensus 396 yVaNsl~~~wd~Qfyp~~~~~~~~~~~vd~~~G 428 (462)
T 2ece_A 396 YVTNSLYSTWDNQFYPEGLKGWMVKLNANPSGG 428 (462)
T ss_dssp EEECCCCHHHHHHHSTTCCCCEEEEEEECTTSC
T ss_pred EEEcCCcccccccccCCCCceEEEEEEecCCCC
Confidence 9999 3 45667755 66556
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-09 Score=104.31 Aligned_cols=257 Identities=12% Similarity=0.022 Sum_probs=159.2
Q ss_pred cceEeccCCCcEEEEEEEccCC-EEEEEeCCCCeEEEEEcCCCCcceeEE----EEeCC-----cCCceeEEEEcC---C
Q psy13635 62 KPVTIIKDLEEGAAIDYYYKKS-MVCWTDHGTEMISCCTFDGNNVGSKHN----VITNG-----LITPDGLAIDWL---T 128 (357)
Q Consensus 62 ~~~~~~~~~~~~~~i~~d~~~~-~ly~~d~~~~~I~~~~~~g~~~~~~~~----~~~~~-----~~~p~glavd~~---~ 128 (357)
..+.+.+.+..|++|++.++.. +||+++.. +.|+.++.+|........ +...+ ...+.|||+++. +
T Consensus 5 ~v~~va~gL~~P~~~a~~pdG~~rl~V~er~-G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n 83 (463)
T 2wg3_C 5 CIQEVVSGLRQPVGALHSGDGSQRLFILEKE-GYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKN 83 (463)
T ss_dssp EEEEEEEEESSEEEEECCSSSSCCEEEEETT-TEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHH
T ss_pred EEEEeccCCCCceEEEECCCCCeEEEEEeCC-ceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCC
Confidence 4456667889999999998763 79999975 789999877652111111 12222 346789999974 5
Q ss_pred CeEEEEeCC--C----------CEEEEEEcCCC--------ceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCC
Q psy13635 129 EKLYWTDSE--T----------NKLEVSSLDGK--------KRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVAR 188 (357)
Q Consensus 129 ~~ly~td~~--~----------~~I~~~~~~g~--------~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~ 188 (357)
+.||++-+. . .+|.|+.++.. ..++++... +....+....|++++ .|
T Consensus 84 ~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~------------~~~~~H~g~~l~fgp-DG 150 (463)
T 2wg3_C 84 GKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVA------------ELHRKHLGGQLLFGP-DG 150 (463)
T ss_dssp CEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEE------------ESSSSSCEEEEEECT-TS
T ss_pred CEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcC------------CCCCcccCCcEeECC-CC
Confidence 789987532 1 37888887531 123443211 023345677899996 67
Q ss_pred eEEEEeCC-----------------CCeEEEEEcCCCc-------------------eEEEecCCCCCceEEEEeCCCC-
Q psy13635 189 NLYWTDTG-----------------TDRIEVCRLEGTH-------------------RKVLVNTDLVEPRAITLSPAHG- 231 (357)
Q Consensus 189 ~lY~td~~-----------------~~~I~~~~~~g~~-------------------~~~~~~~~~~~P~giavd~~~g- 231 (357)
+||++-.. .++|.|+++||.. ...+...++.+|.|+++||.++
T Consensus 151 ~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~ 230 (463)
T 2wg3_C 151 FLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTD 230 (463)
T ss_dssp CEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSS
T ss_pred cEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCC
Confidence 99998432 2479999999941 1234445789999999999754
Q ss_pred -----EEEEEeCCCC---CCeEEEEecCC---C-ceEEEeeC-CCCCceEEEEec------CCCEEEEEeCCCCeEEEEe
Q psy13635 232 -----YLFWSDWNEK---RPKIERSLLNG---G-ERVLLVKD-RLGWPNGITLDV------DNEKLYWCDAKTDKIEMID 292 (357)
Q Consensus 232 -----~Ly~~d~~~~---~~~I~~~~~dg---~-~~~~~~~~-~l~~P~giaid~------~~~~lY~~d~~~~~I~~~~ 292 (357)
.+|.+|.... ...|..+...+ . .....+.. .-..|.|+++-. ..+.+++++.. ++|.++.
T Consensus 231 ~~G~l~~~~~D~~G~~~~~~ei~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~-g~i~~~~ 309 (463)
T 2wg3_C 231 ININLTILCSDSNGKNRSSARILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRN-GNFLTLQ 309 (463)
T ss_dssp TTCSEEEEEECC------CEEEEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETT-SCEEEEE
T ss_pred cccceEEEecccCCCCCCCCeEeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCC-CcEEEEE
Confidence 7888886321 12444442211 0 11111111 114688999832 23458899986 7899998
Q ss_pred CCCCC---eEEEec---------CCCCceEEEEEE-CCEEEEEeC-------CCCeEEEEe
Q psy13635 293 FDGNN---RRELIN---------ENLPHVFGISLL-GDYVYWTDW-------QRRSIDRVN 333 (357)
Q Consensus 293 ~dG~~---~~~i~~---------~~~~~p~gia~~-~~~ly~td~-------~~~~I~~~~ 333 (357)
++... ....+. .....|.+++.+ +|.||++++ ..++|+|+.
T Consensus 310 ~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~ 370 (463)
T 2wg3_C 310 QSPVTKQWQEKPLCLGTSGSCRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIV 370 (463)
T ss_dssp C-----CCEEEEECEEETTSSCSCCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEE
T ss_pred eCCCCceeeEEEeecCCcccccccccCcceEEEECCCCCEEEEeccCCcccCCCCcEEEec
Confidence 76432 222221 124578999998 589999997 568999987
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.5e-08 Score=91.72 Aligned_cols=245 Identities=9% Similarity=-0.025 Sum_probs=154.6
Q ss_pred EEEEeCCCCeEEEEEcCCCCcceeEEEEeCCc-C-CceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCc
Q psy13635 85 VCWTDHGTEMISCCTFDGNNVGSKHNVITNGL-I-TPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQP 162 (357)
Q Consensus 85 ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~-~-~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p 162 (357)
++++...++.|..+++.... ....+..+- . .|.++++++.++.+|+++...+.|.++++........+..+..
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~---~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-- 77 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMA---VDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP-- 77 (337)
T ss_dssp EEEEEETTTEEEEEETTTTE---EEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT--
T ss_pred EEEEcCCCCeEEEEECCCCc---EEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc--
Confidence 44555556667777765542 122222222 1 5899999998889999999889999999865443322221100
Q ss_pred ceeeeeccCcccccCCceEEEeCCCCeEEEEeC-----------CCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCC
Q psy13635 163 RAIASYKLPTIEVEHPDGVAVDWVARNLYWTDT-----------GTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHG 231 (357)
Q Consensus 163 ~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~-----------~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g 231 (357)
......|.++++++.++.||+++. ..+.|.+.++++......... ...|.+++++|.+.
T Consensus 78 ---------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~ 147 (337)
T 1pby_B 78 ---------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGS 147 (337)
T ss_dssp ---------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSS
T ss_pred ---------ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCC
Confidence 000126889999988889999962 247899999886544333332 35799999999877
Q ss_pred EEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCC-----------------------eE
Q psy13635 232 YLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTD-----------------------KI 288 (357)
Q Consensus 232 ~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~-----------------------~I 288 (357)
+||+++ +.|...++++......+... ..+..+++++.+..||++....+ .|
T Consensus 148 ~l~~~~-----~~i~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 221 (337)
T 1pby_B 148 KLYGLG-----RDLHVMDPEAGTLVEDKPIQ-SWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL 221 (337)
T ss_dssp CEEEES-----SSEEEEETTTTEEEEEECST-TTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEE
T ss_pred EEEEeC-----CeEEEEECCCCcEeeeeecc-ccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccce
Confidence 899992 47899998766554443322 11222355555666666654444 35
Q ss_pred EEEeCCCCCeEEE-ecCCCCceEEEEEE--CCEEEEEeCCCCeEEEEeCccCceeEEEecccCCceeee
Q psy13635 289 EMIDFDGNNRREL-INENLPHVFGISLL--GDYVYWTDWQRRSIDRVNKITGNDREVIIERSCTGVTRR 354 (357)
Q Consensus 289 ~~~~~dG~~~~~i-~~~~~~~p~gia~~--~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~i~ 354 (357)
..++........+ .......|.++++. +..+|++ .+.|+.++..+++....+..+ ..|.++.
T Consensus 222 ~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~---~~~v~~~d~~~~~~~~~~~~~-~~~~~~~ 286 (337)
T 1pby_B 222 LTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA---YNVLESFDLEKNASIKRVPLP-HSYYSVN 286 (337)
T ss_dssp EEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE---ESEEEEEETTTTEEEEEEECS-SCCCEEE
T ss_pred EEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe---CCeEEEEECCCCcCcceecCC-CceeeEE
Confidence 7777765444322 11233478888886 4578888 478999998777776665433 3455554
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.23 E-value=7.8e-09 Score=96.04 Aligned_cols=261 Identities=10% Similarity=0.037 Sum_probs=154.6
Q ss_pred EeecCCCCeEEEEEeC-----------CcEEEEEcCCCCcceEe-cc-----CCCcEEEEEEEccCCEEEEEeCC-CCeE
Q psy13635 34 ALSHHVAAQMLLFATS-----------KDIRIANLSRPLKPVTI-IK-----DLEEGAAIDYYYKKSMVCWTDHG-TEMI 95 (357)
Q Consensus 34 ~~~~~~~~~~l~~~~~-----------~~i~~~~~~~~~~~~~~-~~-----~~~~~~~i~~d~~~~~ly~~d~~-~~~I 95 (357)
.++.++...++|.++. +.|..+|+........+ .. ....|.++++++++..||+++.. .+.|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 6777878888998872 35899998653222222 11 13468899999999999999875 6889
Q ss_pred EEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcC--CCceEEEEecCCCCcceeeeeccCcc
Q psy13635 96 SCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD--GKKRKVLYWEDIDQPRAIASYKLPTI 173 (357)
Q Consensus 96 ~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~--g~~~~~~~~~~~~~p~~i~~~~~~~~ 173 (357)
..++++... ....+ -......++.+.+.++..|++....+++..+..+ |+..........-.+
T Consensus 134 ~v~d~~~~~---~~~~~-i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~----------- 198 (361)
T 2oiz_A 134 GIVDVAKGD---YVEDV-TAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSV----------- 198 (361)
T ss_dssp EEEETTTTE---EEEEE-GGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCT-----------
T ss_pred EEEECCCCc---EEEEE-ecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcC-----------
Confidence 999988653 11120 1122233345555555566665556666655553 322211110000000
Q ss_pred cccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEec---------CCCCCceE---EEEeCCCCEEEEEeC-CC
Q psy13635 174 EVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVN---------TDLVEPRA---ITLSPAHGYLFWSDW-NE 240 (357)
Q Consensus 174 ~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~---------~~~~~P~g---iavd~~~g~Ly~~d~-~~ 240 (357)
-..|..+...+.++.+++... .+++.+++..+.....+.. .....|.| +++++..+++|++.. ..
T Consensus 199 -~~~~~~~~~~~~g~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~ 276 (361)
T 2oiz_A 199 -KDDPIFIAPALDKDKAHFVSY-YGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDG 276 (361)
T ss_dssp -TTSCBCSCCEECSSEEEEEBT-TSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSC
T ss_pred -CCCceEEEecccCCEEEEEeC-CCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCC
Confidence 001211111222345555443 3567777766443322211 01123444 999999899999865 10
Q ss_pred -------CCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCC--CeEEEecCCCCceEE
Q psy13635 241 -------KRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGN--NRRELINENLPHVFG 311 (357)
Q Consensus 241 -------~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~--~~~~i~~~~~~~p~g 311 (357)
....|..+++........+..+- |.+|++++++.+||++.. +.|..+|.... .....+.....+|.+
T Consensus 277 ~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~--~~v~v~D~~t~~l~~~~~i~~~G~~P~~ 352 (361)
T 2oiz_A 277 KEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG--GNVNVYDISQPEPKLLRTIEGAAEASLQ 352 (361)
T ss_dssp CTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS--SCEEEEECSSSSCEEEEEETTSCSSEEE
T ss_pred CcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC--CeEEEEECCCCcceeeEEeccCCCCcEE
Confidence 02489999988765555454443 999999999999999885 89999998665 333333345679999
Q ss_pred EEEE
Q psy13635 312 ISLL 315 (357)
Q Consensus 312 ia~~ 315 (357)
+++.
T Consensus 353 ~~~~ 356 (361)
T 2oiz_A 353 VQFH 356 (361)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9886
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.22 E-value=7.1e-08 Score=83.82 Aligned_cols=193 Identities=17% Similarity=0.044 Sum_probs=133.1
Q ss_pred CCcCCceeEEEEcCCCeEEEEeCC--CCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEE
Q psy13635 114 NGLITPDGLAIDWLTEKLYWTDSE--TNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLY 191 (357)
Q Consensus 114 ~~~~~p~glavd~~~~~ly~td~~--~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY 191 (357)
+.-....||++| ++.||.+... ..+|.++++.......-..-+ .-....|++++ +++||
T Consensus 18 d~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~---------------~~~fgeGi~~~--~~~ly 78 (243)
T 3mbr_X 18 DTTAFTEGLFYL--RGHLYESTGETGRSSVRKVDLETGRILQRAEVP---------------PPYFGAGIVAW--RDRLI 78 (243)
T ss_dssp CTTCCEEEEEEE--TTEEEEEECCTTSCEEEEEETTTCCEEEEEECC---------------TTCCEEEEEEE--TTEEE
T ss_pred CCccccccEEEE--CCEEEEECCCCCCceEEEEECCCCCEEEEEeCC---------------CCcceeEEEEe--CCEEE
Confidence 344567899999 4899999765 469999999755433222111 00123566666 78999
Q ss_pred EEeCCCCeEEEEEcCCCc-eEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeC-----CCCC
Q psy13635 192 WTDTGTDRIEVCRLEGTH-RKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKD-----RLGW 265 (357)
Q Consensus 192 ~td~~~~~I~~~~~~g~~-~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~-----~l~~ 265 (357)
..++..+++.++|++... ...+-. . ..+.|++-| +++||.+|. . .+|...+........-+.. .+..
T Consensus 79 ~ltw~~~~v~v~D~~tl~~~~ti~~-~-~~Gwglt~d--g~~L~vSdg-s--~~l~~iDp~t~~~~~~I~V~~~g~~~~~ 151 (243)
T 3mbr_X 79 QLTWRNHEGFVYDLATLTPRARFRY-P-GEGWALTSD--DSHLYMSDG-T--AVIRKLDPDTLQQVGSIKVTAGGRPLDN 151 (243)
T ss_dssp EEESSSSEEEEEETTTTEEEEEEEC-S-SCCCEEEEC--SSCEEEECS-S--SEEEEECTTTCCEEEEEECEETTEECCC
T ss_pred EEEeeCCEEEEEECCcCcEEEEEeC-C-CCceEEeeC--CCEEEEECC-C--CeEEEEeCCCCeEEEEEEEccCCccccc
Confidence 999999999999987544 334332 2 356777655 689999994 3 5999999886544333322 2345
Q ss_pred ceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEec-C------------CCCceEEEEEE--CCEEEEEeCCCCeEE
Q psy13635 266 PNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELIN-E------------NLPHVFGISLL--GDYVYWTDWQRRSID 330 (357)
Q Consensus 266 P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~-~------------~~~~p~gia~~--~~~ly~td~~~~~I~ 330 (357)
++.+.. .+++||...+.++.|.++|+........+. . ...-|.|||++ +++||+|.-.=..++
T Consensus 152 lNeLe~--~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~ 229 (243)
T 3mbr_X 152 LNELEW--VNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLY 229 (243)
T ss_dssp EEEEEE--ETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred ceeeEE--eCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEE
Confidence 677775 489999999999999999996544333322 1 22368999999 489999985556888
Q ss_pred EEeC
Q psy13635 331 RVNK 334 (357)
Q Consensus 331 ~~~~ 334 (357)
.+..
T Consensus 230 ~v~~ 233 (243)
T 3mbr_X 230 EIRL 233 (243)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.7e-08 Score=90.26 Aligned_cols=241 Identities=11% Similarity=-0.010 Sum_probs=159.5
Q ss_pred CCcEEEEEc-CCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcC
Q psy13635 49 SKDIRIANL-SRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 127 (357)
Q Consensus 49 ~~~i~~~~~-~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~ 127 (357)
.+.|..+|. +|....+........+..+++.++ ++|+++ ..+.|+.++.+|.. ..+.-...-..+.++++.+
T Consensus 14 ~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pd-G~ilvs--~~~~V~~~d~~G~~---~W~~~~~~~~~~~~~~~~~- 86 (276)
T 3no2_A 14 WNKIAIINKDTKEIVWEYPLEKGWECNSVAATKA-GEILFS--YSKGAKMITRDGRE---LWNIAAPAGCEMQTARILP- 86 (276)
T ss_dssp CSEEEEEETTTTEEEEEEECCTTCCCCEEEECTT-SCEEEE--CBSEEEEECTTSCE---EEEEECCTTCEEEEEEECT-
T ss_pred CCEEEEEECCCCeEEEEeCCCccCCCcCeEECCC-CCEEEe--CCCCEEEECCCCCE---EEEEcCCCCccccccEECC-
Confidence 445778887 442222222222236788888874 556664 35679999987653 2332222112345667774
Q ss_pred CCeEEEEeCC-CCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcC
Q psy13635 128 TEKLYWTDSE-TNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLE 206 (357)
Q Consensus 128 ~~~ly~td~~-~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~ 206 (357)
++++++++.. +++|..++.+|+....+...... ......|.++++++ +|.+++++...++|..++++
T Consensus 87 dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~-----------~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~ 154 (276)
T 3no2_A 87 DGNALVAWCGHPSTILEVNMKGEVLSKTEFETGI-----------ERPHAQFRQINKNK-KGNYLVPLFATSEVREIAPN 154 (276)
T ss_dssp TSCEEEEEESTTEEEEEECTTSCEEEEEEECCSC-----------SSGGGSCSCCEECT-TSCEEEEETTTTEEEEECTT
T ss_pred CCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCC-----------CcccccccCceECC-CCCEEEEecCCCEEEEECCC
Confidence 6778888877 88999999999876554322100 11223577888884 66788899988999999999
Q ss_pred CCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecC-CCceEEEeeC-----CCCCceEEEEecCCCEEEE
Q psy13635 207 GTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLN-GGERVLLVKD-----RLGWPNGITLDVDNEKLYW 280 (357)
Q Consensus 207 g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~d-g~~~~~~~~~-----~l~~P~giaid~~~~~lY~ 280 (357)
|+........ ..|.++++.+ +|.+++++... ++|..++.+ |.....+-.. .+..|.++++. .++++|+
T Consensus 155 G~~~w~~~~~--~~~~~~~~~~-~g~~~v~~~~~--~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~-~~G~i~v 228 (276)
T 3no2_A 155 GQLLNSVKLS--GTPFSSAFLD-NGDCLVACGDA--HCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPL-QNGGLYI 228 (276)
T ss_dssp SCEEEEEECS--SCCCEEEECT-TSCEEEECBTT--SEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEEC-TTSCEEE
T ss_pred CCEEEEEECC--CCccceeEcC-CCCEEEEeCCC--CeEEEEeCcCCcEEEEecCCCCCCccccccccceEc-CCCCEEE
Confidence 8877665432 5788999986 58888988874 589999999 7776666432 35669999998 6899999
Q ss_pred EeCC----------CCeEEEEeCCCCCeEEEec-CCCCceEEEEE
Q psy13635 281 CDAK----------TDKIEMIDFDGNNRRELIN-ENLPHVFGISL 314 (357)
Q Consensus 281 ~d~~----------~~~I~~~~~dG~~~~~i~~-~~~~~p~gia~ 314 (357)
++.. ..++..++.+|+-.=.+-. ..+..+.+++.
T Consensus 229 ~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~~ 273 (276)
T 3no2_A 229 CNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTICP 273 (276)
T ss_dssp EEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEEE
T ss_pred EeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeeee
Confidence 9952 3467778777754332221 23555666544
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-08 Score=88.85 Aligned_cols=183 Identities=13% Similarity=0.040 Sum_probs=123.4
Q ss_pred EEEEEeCC----cEEEEEcCCCCcceE-eccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcC
Q psy13635 43 MLLFATSK----DIRIANLSRPLKPVT-IIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLI 117 (357)
Q Consensus 43 ~l~~~~~~----~i~~~~~~~~~~~~~-~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 117 (357)
.||.++.. .|+++|+..++.... ....-....|++++ +++||.++..++.++.++.+... ....+..+ .
T Consensus 54 ~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~---~~~ti~~~-~ 127 (262)
T 3nol_A 54 YFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLR---QVRSFNYD-G 127 (262)
T ss_dssp EEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCC---EEEEEECS-S
T ss_pred EEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCc---EEEEEECC-C
Confidence 67777744 699999977432222 22333345667775 78999999999999999998764 23333322 1
Q ss_pred CceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCc-eEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC
Q psy13635 118 TPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKK-RKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG 196 (357)
Q Consensus 118 ~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~-~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~ 196 (357)
.+.|++.| ++.||.+|. +++|..+++.... ...+.-.. . ...+..++.+... +|+||+..+.
T Consensus 128 eG~glt~d--g~~L~~SdG-s~~i~~iDp~T~~v~~~I~V~~--~----------g~~~~~lNELe~~--~G~lyan~w~ 190 (262)
T 3nol_A 128 EGWGLTHN--DQYLIMSDG-TPVLRFLDPESLTPVRTITVTA--H----------GEELPELNELEWV--DGEIFANVWQ 190 (262)
T ss_dssp CCCCEEEC--SSCEEECCS-SSEEEEECTTTCSEEEEEECEE--T----------TEECCCEEEEEEE--TTEEEEEETT
T ss_pred CceEEecC--CCEEEEECC-CCeEEEEcCCCCeEEEEEEecc--C----------CccccccceeEEE--CCEEEEEEcc
Confidence 44566655 899999995 7899999987543 33332111 1 1122345566654 7899999999
Q ss_pred CCeEEEEEcCCCc-eEEEecCC-----------CCCceEEEEeCCCCEEEEEeCCCCCCeEEEEec
Q psy13635 197 TDRIEVCRLEGTH-RKVLVNTD-----------LVEPRAITLSPAHGYLFWSDWNEKRPKIERSLL 250 (357)
Q Consensus 197 ~~~I~~~~~~g~~-~~~~~~~~-----------~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~ 250 (357)
.+.|.++|+.... ...+-..+ ...|+|||+||.+++||+|...= .+++.+.+
T Consensus 191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~W--p~~~ev~~ 254 (262)
T 3nol_A 191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLW--PKVFEITL 254 (262)
T ss_dssp SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTC--SEEEEEEE
T ss_pred CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCC--CceEEEEE
Confidence 9999999997544 34443221 24789999999999999998763 47877765
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.8e-09 Score=100.89 Aligned_cols=259 Identities=12% Similarity=0.070 Sum_probs=161.2
Q ss_pred EEEEeecCCCCeEEEEEe-----------CCcEEEEEcCCCCcceEe-cc------CCCcEEEEEEEccCCEEEEEeCC-
Q psy13635 31 FWYALSHHVAAQMLLFAT-----------SKDIRIANLSRPLKPVTI-IK------DLEEGAAIDYYYKKSMVCWTDHG- 91 (357)
Q Consensus 31 ~~~~~~~~~~~~~l~~~~-----------~~~i~~~~~~~~~~~~~~-~~------~~~~~~~i~~d~~~~~ly~~d~~- 91 (357)
.. .++.+++...+|+++ .+.|..+|.........+ +. ....|.++.+++++.++|+++..
T Consensus 120 ~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~ 198 (426)
T 3c75_H 120 LP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSP 198 (426)
T ss_dssp SC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSS
T ss_pred CC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCC
Confidence 45 777888888898887 346899998763322222 22 13468899999999999999875
Q ss_pred CCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccC
Q psy13635 92 TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLP 171 (357)
Q Consensus 92 ~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~ 171 (357)
.+.|..+++..... ...+.. |....+.+.++..|++...++++..+++............+.
T Consensus 199 ~~~VsVID~~t~kv---v~~I~v----~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~----------- 260 (426)
T 3c75_H 199 APAVGVVDLEGKTF---DRMLDV----PDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFH----------- 260 (426)
T ss_dssp SCEEEEEETTTTEE---EEEEEC----CSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCS-----------
T ss_pred CCeEEEEECCCCeE---EEEEEc----CCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeec-----------
Confidence 78899999987641 222221 122233333456666666666666666533222211100000
Q ss_pred cccccCC--ceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecC---------CCCCceE---EEEeCCCCEEEEEe
Q psy13635 172 TIEVEHP--DGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNT---------DLVEPRA---ITLSPAHGYLFWSD 237 (357)
Q Consensus 172 ~~~~~~p--~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~---------~~~~P~g---iavd~~~g~Ly~~d 237 (357)
.. ..| ..+++++.++.+|++.. .+++.+++..+.....+..- ....|.+ +++++.+++||+++
T Consensus 261 v~--~~p~~~~~~~~~dg~~~~~~s~-~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~ 337 (426)
T 3c75_H 261 TE--DELLINHPAFSLRSGRLVWPTY-TGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLV 337 (426)
T ss_dssp CT--TSCBCSCCEECTTTCEEEEEBT-TSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEE
T ss_pred cC--CCceeeEeeecCCCCEEEEEeC-CCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEe
Confidence 00 112 12355666778887765 46899998876554332110 0123555 89999999999997
Q ss_pred CCC-------CCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCC-EEEEEeCCCCeEEEEeCCCCCeEEEecCCCCce
Q psy13635 238 WNE-------KRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNE-KLYWCDAKTDKIEMIDFDGNNRRELINENLPHV 309 (357)
Q Consensus 238 ~~~-------~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~-~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p 309 (357)
... ....|..++........-+..+ ..|.+|++++++. ++|++....+.|..+|........-+......|
T Consensus 338 ~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~~vG~~P 416 (426)
T 3c75_H 338 DQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVDQLGRGP 416 (426)
T ss_dssp EECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCSSSC
T ss_pred cccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEecCCCCCC
Confidence 421 0137999998866554433322 3699999998888 899999999999999987655433332234566
Q ss_pred EEE
Q psy13635 310 FGI 312 (357)
Q Consensus 310 ~gi 312 (357)
.++
T Consensus 417 ~~i 419 (426)
T 3c75_H 417 QII 419 (426)
T ss_dssp CEE
T ss_pred cEE
Confidence 654
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.8e-09 Score=92.05 Aligned_cols=158 Identities=13% Similarity=0.110 Sum_probs=117.3
Q ss_pred CceEEEeCCCCeEEEEeCCCCeEEEEEcCC-CceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceE
Q psy13635 178 PDGVAVDWVARNLYWTDTGTDRIEVCRLEG-THRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERV 256 (357)
Q Consensus 178 p~glavD~~~~~lY~td~~~~~I~~~~~~g-~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~ 256 (357)
-.||+++ ++.||.+....++|.++++.. +....+ ...-....|++++ +++||.+++.. +.++.++.+.....
T Consensus 57 tqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~--~~v~V~D~~Tl~~~ 129 (268)
T 3nok_A 57 TQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTE--GLLFTWSGMPPQRE 129 (268)
T ss_dssp EEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSS--CEEEEEETTTTEEE
T ss_pred cceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccC--CEEEEEECCcCcEE
Confidence 3699998 689999999988999999874 444444 2222234567776 68999999985 59999998765554
Q ss_pred EEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCe-EEEecC----CCCceEEEEEECCEEEEEeCCCCeEEE
Q psy13635 257 LLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNR-RELINE----NLPHVFGISLLGDYVYWTDWQRRSIDR 331 (357)
Q Consensus 257 ~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~-~~i~~~----~~~~p~gia~~~~~ly~td~~~~~I~~ 331 (357)
.-+... ..+.|++-| +++||.+| ++++|+.+|+..... ..+... ....+..|.+.+|.||...|.++.|.+
T Consensus 130 ~ti~~~-~eGwGLt~D--g~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~v 205 (268)
T 3nok_A 130 RTTRYS-GEGWGLCYW--NGKLVRSD-GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVLE 205 (268)
T ss_dssp EEEECS-SCCCCEEEE--TTEEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEEE
T ss_pred EEEeCC-CceeEEecC--CCEEEEEC-CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEEE
Confidence 444332 345677765 78999999 689999999876443 223221 234567788889999999999999999
Q ss_pred EeCccCceeEEEecc
Q psy13635 332 VNKITGNDREVIIER 346 (357)
Q Consensus 332 ~~~~~g~~~~~i~~~ 346 (357)
+|+.+|+....|-..
T Consensus 206 IDp~TG~V~~~Idl~ 220 (268)
T 3nok_A 206 IDPATGTVVGVIDAS 220 (268)
T ss_dssp ECTTTCBEEEEEECH
T ss_pred EeCCCCcEEEEEECC
Confidence 999999988887543
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.18 E-value=3.8e-08 Score=89.47 Aligned_cols=217 Identities=11% Similarity=-0.019 Sum_probs=142.0
Q ss_pred CCcEEEEEcCCCCcceEeccCCC--cEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEe-CC-----cCCce
Q psy13635 49 SKDIRIANLSRPLKPVTIIKDLE--EGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT-NG-----LITPD 120 (357)
Q Consensus 49 ~~~i~~~~~~~~~~~~~~~~~~~--~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~-~~-----~~~p~ 120 (357)
.+.|+++|+.+.. ......... .|.++++++.++.+|+++..++.|+.+++++.. ....+. .. ...|.
T Consensus 20 ~~~v~~~d~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~---~~~~~~~~~~~~~~~~~~~ 95 (349)
T 1jmx_B 20 PNNLHVVDVASDT-VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK---NTFHANLSSVPGEVGRSMY 95 (349)
T ss_dssp TTEEEEEETTTTE-EEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE---EEEEEESCCSTTEEEECSS
T ss_pred CCeEEEEECCCCc-EEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc---EEEEEEccccccccccccc
Confidence 5679999987632 222222222 688999999888899999888999999998653 122222 21 23489
Q ss_pred eEEEEcCCCeEEEEeCC-----------CCEEEEEEcCCCc-eE--EEEecCCCCcceeeeeccCcccccCCceEEEeCC
Q psy13635 121 GLAIDWLTEKLYWTDSE-----------TNKLEVSSLDGKK-RK--VLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWV 186 (357)
Q Consensus 121 glavd~~~~~ly~td~~-----------~~~I~~~~~~g~~-~~--~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~ 186 (357)
++++++.++.||+++.. .+.|.++++.... .+ ..... -..+.++++++.
T Consensus 96 ~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-----------------~~~~~~~~~s~d 158 (349)
T 1jmx_B 96 SFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-----------------PRQVYLMRAADD 158 (349)
T ss_dssp CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-----------------CSSCCCEEECTT
T ss_pred ceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-----------------CCcccceeECCC
Confidence 99999988899998854 5789998876422 11 11111 124677888876
Q ss_pred CCeEEEEeCCCCeEEEEEcCCCceEEEecCC-------------------------------------------------
Q psy13635 187 ARNLYWTDTGTDRIEVCRLEGTHRKVLVNTD------------------------------------------------- 217 (357)
Q Consensus 187 ~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~------------------------------------------------- 217 (357)
+. +|++.. .|.+.++........+...
T Consensus 159 g~-l~~~~~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 159 GS-LYVAGP---DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp SC-EEEESS---SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred Cc-EEEccC---cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 65 887532 3777776533222111111
Q ss_pred -------------------CCCceEEEEeC-CCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCE
Q psy13635 218 -------------------LVEPRAITLSP-AHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEK 277 (357)
Q Consensus 218 -------------------~~~P~giavd~-~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~ 277 (357)
...|.+++++| ....||.+ . +.|...++........+..+ ..|.++++++.+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~---~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~ 308 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--L---NRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDK 308 (349)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--E---SEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSC
T ss_pred EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--c---CeEEEEECccCeEEEEEcCC-CCccceEECCCCCE
Confidence 01456677778 77788888 2 48999998766554444332 46889999987788
Q ss_pred EEEEeCCCCeEEEEeCCCCC
Q psy13635 278 LYWCDAKTDKIEMIDFDGNN 297 (357)
Q Consensus 278 lY~~d~~~~~I~~~~~dG~~ 297 (357)
||++. ..+.|..++.+...
T Consensus 309 l~~~~-~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 309 LYLGG-TFNDLAVFNPDTLE 327 (349)
T ss_dssp EEEES-BSSEEEEEETTTTE
T ss_pred EEEec-CCCeEEEEeccccc
Confidence 98864 45889999986543
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.7e-07 Score=88.51 Aligned_cols=227 Identities=11% Similarity=0.076 Sum_probs=159.4
Q ss_pred CcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCC--CeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcC
Q psy13635 50 KDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGT--EMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 127 (357)
Q Consensus 50 ~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~--~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~ 127 (357)
..|+..|+++. ....+........+++++|++..|+++.... ..|+..++.+.. ...+...-..+..+++.+.
T Consensus 159 ~~i~i~d~~g~-~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~----~~~l~~~~~~~~~~~~spd 233 (415)
T 2hqs_A 159 YELRVSDYDGY-NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPD 233 (415)
T ss_dssp EEEEEEETTSC-SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC----EEEEECCSSCEEEEEECTT
T ss_pred ceEEEEcCCCC-CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc----EEEeecCCCcccCEEEcCC
Confidence 57999999873 4455555556788999999999998887643 589999998764 3334433346788999998
Q ss_pred CCeEEEEeCC--CCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCC--CeEEEE
Q psy13635 128 TEKLYWTDSE--TNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGT--DRIEVC 203 (357)
Q Consensus 128 ~~~ly~td~~--~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~--~~I~~~ 203 (357)
++.|+++... ...|+..++.+.....+... -.....+++.+.+..|+++.... .+|+..
T Consensus 234 g~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~-----------------~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~ 296 (415)
T 2hqs_A 234 GSKLAFALSKTGSLNLYVMDLASGQIRQVTDG-----------------RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKV 296 (415)
T ss_dssp SSEEEEEECTTSSCEEEEEETTTCCEEECCCC-----------------SSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred CCEEEEEEecCCCceEEEEECCCCCEEeCcCC-----------------CCcccceEECCCCCEEEEEECCCCCcEEEEE
Confidence 8888877643 45699999877654433211 12356678887787788776433 379999
Q ss_pred EcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeC
Q psy13635 204 RLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDA 283 (357)
Q Consensus 204 ~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~ 283 (357)
++++.....+.. .......++++|.+..|+++........|+..++++.....+.. . .....+++.+.+..|+++..
T Consensus 297 d~~~~~~~~l~~-~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~-~-~~~~~~~~spdg~~l~~~s~ 373 (415)
T 2hqs_A 297 NINGGAPQRITW-EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSS-T-FLDETPSLAPNGTMVIYSSS 373 (415)
T ss_dssp ETTSSCCEECCC-SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCC-S-SSCEEEEECTTSSEEEEEEE
T ss_pred ECCCCCEEEEec-CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecC-C-CCcCCeEEcCCCCEEEEEEc
Confidence 988766544432 23456789999988888888754222589999998776655432 2 36788999987787887765
Q ss_pred CCC--eEEEEeCCCCCeEEE
Q psy13635 284 KTD--KIEMIDFDGNNRREL 301 (357)
Q Consensus 284 ~~~--~I~~~~~dG~~~~~i 301 (357)
..+ .|+.++++|...+.+
T Consensus 374 ~~~~~~l~~~d~~g~~~~~l 393 (415)
T 2hqs_A 374 QGMGSVLNLVSTDGRFKARL 393 (415)
T ss_dssp ETTEEEEEEEETTSCCEEEC
T ss_pred CCCccEEEEEECCCCcEEEe
Confidence 444 799999998776544
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.14 E-value=1.5e-08 Score=94.37 Aligned_cols=260 Identities=12% Similarity=0.071 Sum_probs=154.2
Q ss_pred eecCCCCeEEEEEe-----------CCcEEEEEcCCCCcceEe-ccC------CCcEEEEEEEccCCEEEEEeCC-CCeE
Q psy13635 35 LSHHVAAQMLLFAT-----------SKDIRIANLSRPLKPVTI-IKD------LEEGAAIDYYYKKSMVCWTDHG-TEMI 95 (357)
Q Consensus 35 ~~~~~~~~~l~~~~-----------~~~i~~~~~~~~~~~~~~-~~~------~~~~~~i~~d~~~~~ly~~d~~-~~~I 95 (357)
++.++...++|+++ .+.|..+|..+......+ +.. ...|.++++++++.++|+++.. .+.|
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V 162 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV 162 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence 66677777888887 245899999773322222 221 2378999999999999999974 7899
Q ss_pred EEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCC-CceEEEEecCCCCcceeeeeccCccc
Q psy13635 96 SCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG-KKRKVLYWEDIDQPRAIASYKLPTIE 174 (357)
Q Consensus 96 ~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g-~~~~~~~~~~~~~p~~i~~~~~~~~~ 174 (357)
..+++..... ..++-..+. ...+ +.+...|++...++++..+++.. ..........+. +.. ..
T Consensus 163 sVID~~t~~v--v~tI~v~g~----~~~~-P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~-~~~--------~~ 226 (386)
T 3sjl_D 163 GVVDLEGKAF--KRMLDVPDC----YHIF-PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH-PED--------EF 226 (386)
T ss_dssp EEEETTTTEE--EEEEECCSE----EEEE-EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS-CTT--------SC
T ss_pred EEEECCCCcE--EEEEECCCc----ceee-cCCCceeEEECCCCCEEEEECCCCCeEEEeecceec-ccc--------cc
Confidence 9999987741 122211111 1112 22333344444445555555532 111111101100 000 00
Q ss_pred ccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecC---------CCCCce---EEEEeCCCCEEEEEeCCC--
Q psy13635 175 VEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNT---------DLVEPR---AITLSPAHGYLFWSDWNE-- 240 (357)
Q Consensus 175 ~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~---------~~~~P~---giavd~~~g~Ly~~d~~~-- 240 (357)
-....+++..+|+++|... .++++.++..+....++..- .-..|. .+++++..++||++....
T Consensus 227 --~~~~~~~~~~dG~~~~vs~-~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~ 303 (386)
T 3sjl_D 227 --LINHPAYSQKAGRLVWPTY-TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDE 303 (386)
T ss_dssp --BCSCCEEETTTTEEEEEBT-TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCT
T ss_pred --ccccceeEcCCCcEEEEeC-CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccc
Confidence 0011256656777766544 46899999887654332110 011233 388899999999986410
Q ss_pred --C---CCeEEEEecCCCceEEEeeCCCCCceEEEEecCCC-EEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEE
Q psy13635 241 --K---RPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNE-KLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISL 314 (357)
Q Consensus 241 --~---~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~-~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~ 314 (357)
+ ..+|+.+++.......-+..+ ..|.+|++++++. +||.++...+.|..+|........-+ ....+|..|.+
T Consensus 304 ~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i-~~~~~p~~l~~ 381 (386)
T 3sjl_D 304 WRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSV-NQLGHGPQVIT 381 (386)
T ss_dssp TCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEE-CCCCSSCCEEE
T ss_pred cccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEe-cCCCCCceeEE
Confidence 0 148999999876654443322 3688999997765 79999999999999998654443333 35678877766
Q ss_pred E
Q psy13635 315 L 315 (357)
Q Consensus 315 ~ 315 (357)
.
T Consensus 382 s 382 (386)
T 3sjl_D 382 T 382 (386)
T ss_dssp E
T ss_pred C
Confidence 4
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.6e-08 Score=98.31 Aligned_cols=245 Identities=13% Similarity=0.118 Sum_probs=160.7
Q ss_pred CeEEEEEeC--CcEEEEEcCCCCcce-EeccCCCcEEEEEE-E-ccCCEEEEEeC-----------------CCCeEEEE
Q psy13635 41 AQMLLFATS--KDIRIANLSRPLKPV-TIIKDLEEGAAIDY-Y-YKKSMVCWTDH-----------------GTEMISCC 98 (357)
Q Consensus 41 ~~~l~~~~~--~~i~~~~~~~~~~~~-~~~~~~~~~~~i~~-d-~~~~~ly~~d~-----------------~~~~I~~~ 98 (357)
..++++.+. ..|.+||++.-+... +.+++...|+++++ . ++.+++|.+.. ..+.+..+
T Consensus 101 G~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvI 180 (595)
T 1fwx_A 101 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV 180 (595)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEE
T ss_pred CCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEE
Confidence 346666664 349999997732222 13456678999998 4 88999999952 22367778
Q ss_pred EcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCC--------------CEEEEEEc--------CCCceE----
Q psy13635 99 TFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSET--------------NKLEVSSL--------DGKKRK---- 152 (357)
Q Consensus 99 ~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~--------------~~I~~~~~--------~g~~~~---- 152 (357)
+.+... ....+...+ +|+++++++.++.+|+|+..+ ..|.+++. +|+...
T Consensus 181 D~~t~~--v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 181 DADKWE--VAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp ETTTTE--EEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred ECCCCe--EEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 887653 113333334 799999999999999999776 34555542 333221
Q ss_pred EEEecCC--C-C-cceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCc----------eEEEec-CC
Q psy13635 153 VLYWEDI--D-Q-PRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTH----------RKVLVN-TD 217 (357)
Q Consensus 153 ~~~~~~~--~-~-p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~----------~~~~~~-~~ 217 (357)
.++.... . . .+-|. .-..|.|+++.|.+.++|+++...++|.+++.+... ..++.. .-
T Consensus 257 ~VID~~~~~~~~~~~~Ip-------vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v 329 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYIP-------IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL 329 (595)
T ss_dssp EEEECSGGGCCSSEEEEE-------EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC
T ss_pred EEEeCcccCCceeEEEEe-------cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC
Confidence 1111111 0 0 01111 124899999999999999999999999999988431 011111 22
Q ss_pred CCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCC----------CceEEEeeCCCCCc------eEEEEecCCCEEEEE
Q psy13635 218 LVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNG----------GERVLLVKDRLGWP------NGITLDVDNEKLYWC 281 (357)
Q Consensus 218 ~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg----------~~~~~~~~~~l~~P------~giaid~~~~~lY~~ 281 (357)
...|.++++++. |++|.+..-. +.|.+.+.+. .....-+..+ .+| .|+++++++..||.+
T Consensus 330 G~gP~h~aF~~d-G~aY~t~~ld--sqV~kwdi~~a~~~~~g~~~~~vi~kidV~-yqpGh~~~~~g~t~~~DGk~l~~~ 405 (595)
T 1fwx_A 330 GLGPLHTAFDGR-GNAYTSLFLD--SQVVKWNIEDAIRAYAGEKVDPIKDKLDVH-YQPGHLKTVMGETLDATNDWLVCL 405 (595)
T ss_dssp CSCEEEEEECTT-SEEEEEETTT--TEEEEEEHHHHHHHHHTCSCCCEEEEEECS-SCEEEEEETTTTSTTCCSSEEEEE
T ss_pred CCCcceEEECCC-CeEEEEEecC--CcEEEEEhhHhhhhhcccccceeEEEeecc-cccccceeccceEeCCCCCEEEEc
Confidence 357999999986 5999999885 4999999875 1122222222 344 567778889999999
Q ss_pred eCCC-CeE-----------EEEeCCCCCeEE
Q psy13635 282 DAKT-DKI-----------EMIDFDGNNRRE 300 (357)
Q Consensus 282 d~~~-~~I-----------~~~~~dG~~~~~ 300 (357)
+..+ .++ ..++..|...+.
T Consensus 406 Nk~skdr~~~~gp~~~~~~ql~dis~~~m~l 436 (595)
T 1fwx_A 406 SKFSKDRFLNVGPLKPENDQLIDISGDKMVL 436 (595)
T ss_dssp ESCCTTSSCCCCSSCCEEEEEEECSSSSCEE
T ss_pred CCCCccccccCCCCCCCcceEEEcCCCcEEE
Confidence 9877 666 778887765543
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.3e-08 Score=92.32 Aligned_cols=223 Identities=14% Similarity=0.082 Sum_probs=145.6
Q ss_pred CCCeEEEEEeC--CcEEEEEcCCC-C--cceEecc--------CCCcEEEEEEEccCCEEEEEeCCC------CeEEEEE
Q psy13635 39 VAAQMLLFATS--KDIRIANLSRP-L--KPVTIIK--------DLEEGAAIDYYYKKSMVCWTDHGT------EMISCCT 99 (357)
Q Consensus 39 ~~~~~l~~~~~--~~i~~~~~~~~-~--~~~~~~~--------~~~~~~~i~~d~~~~~ly~~d~~~------~~I~~~~ 99 (357)
.+..+|++++. ..|..+|.... . +....++ +...|+.+...+.+ ||++..++ +.|..++
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEE
Confidence 66888999884 46999998542 2 2222231 45589999998754 99987765 6788888
Q ss_pred cCCCCcceeEEEEeCC-c--CCceeEEEEcCCCeEEEEeC------------------CCCEEEEEEcCCCceEEEEecC
Q psy13635 100 FDGNNVGSKHNVITNG-L--ITPDGLAIDWLTEKLYWTDS------------------ETNKLEVSSLDGKKRKVLYWED 158 (357)
Q Consensus 100 ~~g~~~~~~~~~~~~~-~--~~p~glavd~~~~~ly~td~------------------~~~~I~~~~~~g~~~~~~~~~~ 158 (357)
..+.. ....+..+ - ..+..+.+.+..+.+|.++. ..++|.+++++.......+.-+
T Consensus 171 ~~T~~---v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg 247 (462)
T 2ece_A 171 HYSFE---PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLG 247 (462)
T ss_dssp TTTCC---EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESC
T ss_pred CCCCe---EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecC
Confidence 87664 23333222 1 12333555777777777763 3789999999865322222111
Q ss_pred CCCcceeeeeccCcccccCCceEEE--eCCCCeEEEEeC-----CCCeEEEEEcCCCce---EEE-ecC-----C-----
Q psy13635 159 IDQPRAIASYKLPTIEVEHPDGVAV--DWVARNLYWTDT-----GTDRIEVCRLEGTHR---KVL-VNT-----D----- 217 (357)
Q Consensus 159 ~~~p~~i~~~~~~~~~~~~p~glav--D~~~~~lY~td~-----~~~~I~~~~~~g~~~---~~~-~~~-----~----- 217 (357)
. .-..|..|++ ++.+..+|++.. ..+.|.++..++... .++ +.. .
T Consensus 248 --~------------~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~ 313 (462)
T 2ece_A 248 --E------------ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEIL 313 (462)
T ss_dssp --T------------TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGG
T ss_pred --C------------CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccc
Confidence 0 1125777767 888999999998 777887766654211 111 111 0
Q ss_pred ------CCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecC-CCceEEE--eeCC-C-------------CCceEEEEecC
Q psy13635 218 ------LVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLN-GGERVLL--VKDR-L-------------GWPNGITLDVD 274 (357)
Q Consensus 218 ------~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~d-g~~~~~~--~~~~-l-------------~~P~giaid~~ 274 (357)
...|.+|.+++.+.+||+++++. +.|..++.+ ....+.+ +..+ . ..|.+++++++
T Consensus 314 ~~f~~~~~~pa~I~lS~DGrfLYVSnrg~--d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpD 391 (462)
T 2ece_A 314 KPFKAVPPLVTDIDISLDDKFLYLSLWGI--GEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRD 391 (462)
T ss_dssp GGGTEECCCCCCEEECTTSCEEEEEETTT--TEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTT
T ss_pred cccccCCCceeEEEECCCCCEEEEEeCCC--CEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCC
Confidence 24689999999999999999995 599998874 3222222 2222 1 15999999999
Q ss_pred CCEEEEEe
Q psy13635 275 NEKLYWCD 282 (357)
Q Consensus 275 ~~~lY~~d 282 (357)
+.+||+++
T Consensus 392 Gk~LyVaN 399 (462)
T 2ece_A 392 GRRVYVTN 399 (462)
T ss_dssp SSEEEEEC
T ss_pred CCEEEEEc
Confidence 99999999
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=2.5e-09 Score=99.54 Aligned_cols=253 Identities=9% Similarity=-0.007 Sum_probs=161.4
Q ss_pred EeecCCCCeEEEEEe-----------CCcEEEEEcCCCCcceEe-cc------CCCcEEEEEEEccCCEEEEEeCC-CCe
Q psy13635 34 ALSHHVAAQMLLFAT-----------SKDIRIANLSRPLKPVTI-IK------DLEEGAAIDYYYKKSMVCWTDHG-TEM 94 (357)
Q Consensus 34 ~~~~~~~~~~l~~~~-----------~~~i~~~~~~~~~~~~~~-~~------~~~~~~~i~~d~~~~~ly~~d~~-~~~ 94 (357)
.+..++....+++++ .+.|..+|+........+ +. ....|.++++++++.++|+++.. ++.
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 667777777888887 356999999774332222 22 12579999999999999999875 456
Q ss_pred EEE--EEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCC----CceEEEEecCCCCcceeeee
Q psy13635 95 ISC--CTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG----KKRKVLYWEDIDQPRAIASY 168 (357)
Q Consensus 95 I~~--~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g----~~~~~~~~~~~~~p~~i~~~ 168 (357)
+.. +++.. . .++-. |.+..+.+.++..|++...++++..++++. ... ++.... ..+
T Consensus 149 v~V~~iD~~t-v----~~i~v-----~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~-v~~~~t----~~i--- 210 (368)
T 1mda_H 149 AGLSVPGASD-D----QLTKS-----ASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGI-VGAQCT----GAQ--- 210 (368)
T ss_dssp EEEEETTTEE-E----EEEEC-----SSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEE-CCCCSC----TTS---
T ss_pred EEEEEEchhh-c----eEEEC-----CCceEEccCCCeEEEEEcCCCCEEEEECccccccCCe-EEEEee----eee---
Confidence 666 45433 1 22211 222334456778899888888888888765 111 110000 000
Q ss_pred ccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecC---------CCCCceE---EEEeCCCCEEEEE
Q psy13635 169 KLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNT---------DLVEPRA---ITLSPAHGYLFWS 236 (357)
Q Consensus 169 ~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~---------~~~~P~g---iavd~~~g~Ly~~ 236 (357)
+. -..|. + .+..+.+||+.. +.+..++..+.....+..- ....|.+ +++++..+++|++
T Consensus 211 --~v--g~~P~--~-~~~~~~~~~vs~--~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~ 281 (368)
T 1mda_H 211 --NC--SSQAA--Q-ANYPGMLVWAVA--SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMIL 281 (368)
T ss_dssp --CB--CSCCE--E-ETTTTEEEECBS--SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred --eC--CCCcc--c-cccCCEEEEEcC--CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEE
Confidence 00 12454 3 556788888877 7899999876543333211 1224666 8999999999998
Q ss_pred eC-C-C-----CCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeC-CCCeEEEEeCCCCCeEEEecCCCCc
Q psy13635 237 DW-N-E-----KRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDA-KTDKIEMIDFDGNNRRELINENLPH 308 (357)
Q Consensus 237 d~-~-~-----~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~-~~~~I~~~~~dG~~~~~i~~~~~~~ 308 (357)
.. . . . ..+..+++.......-+..+ ..|.||++++++.++|++.. ..+.|..+|.........+. -...
T Consensus 282 ~~~~~~~~~~~~-~~~~ViD~~t~~vv~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~-vg~~ 358 (368)
T 1mda_H 282 TVEHSRSCLAAA-ENTSSVTASVGQTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE-LDKG 358 (368)
T ss_dssp EEECSSCTTSCE-EEEEEEESSSCCEEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC-CCSC
T ss_pred eccccCcccccC-CCEEEEECCCCeEEEEEECC-CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEE-CCCC
Confidence 65 2 1 1 24557887765443322222 26999999977777999998 69999999997655444442 4678
Q ss_pred eEEEEEEC
Q psy13635 309 VFGISLLG 316 (357)
Q Consensus 309 p~gia~~~ 316 (357)
|.||++.+
T Consensus 359 P~~i~~~~ 366 (368)
T 1mda_H 359 PESLSVQN 366 (368)
T ss_dssp CCEEECCC
T ss_pred CCEEEeec
Confidence 99998753
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.04 E-value=3.3e-08 Score=96.14 Aligned_cols=238 Identities=8% Similarity=0.053 Sum_probs=156.5
Q ss_pred cCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEe-CCcCCceeEEE-E-cCCCeEEEEe-----------------CCCCE
Q psy13635 81 KKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT-NGLITPDGLAI-D-WLTEKLYWTD-----------------SETNK 140 (357)
Q Consensus 81 ~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~-~~~~~p~glav-d-~~~~~ly~td-----------------~~~~~ 140 (357)
++.++|++|..+++|.+++++... ...++. .....|.|+++ . +.++.+|.+. ...+.
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~---~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMK---CDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTE---EEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCce---EeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 578999999999999999999874 233223 33467999998 4 7899999994 23457
Q ss_pred EEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCC--------------e-------
Q psy13635 141 LEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTD--------------R------- 199 (357)
Q Consensus 141 I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~--------------~------- 199 (357)
+.+++.+......-+. .. ..|.++++++.++.+|+|..... .
T Consensus 177 vtvID~~t~~v~~qI~---------------Vg--g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~ 239 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVL---------------VS--GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIA 239 (595)
T ss_dssp EEEEETTTTEEEEEEE---------------ES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHH
T ss_pred EEEEECCCCeEEEEEE---------------eC--CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecc
Confidence 7777777543322221 11 26999999999999999997652 2
Q ss_pred ----------------EEEEEcCC---CceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCce-----
Q psy13635 200 ----------------IEVCRLEG---THRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGER----- 255 (357)
Q Consensus 200 ----------------I~~~~~~g---~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~----- 255 (357)
|.++|... +.....+.. -..|.|+.++|++.++|+++.... +|..++.+....
T Consensus 240 ~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~--~VsVid~~~~~~~~~~~ 316 (595)
T 1fwx_A 240 EIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSP--TVTVLDVTRFDAVFYEN 316 (595)
T ss_dssp HHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSS--BEEEEEGGGHHHHHHSC
T ss_pred ceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCC--eEEEEECcccccccccc
Confidence 33444332 110111111 258999999999889999999964 999999874310
Q ss_pred -----EEEee-CCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCC-------CCeEEEecC--CCCce------EEEE-
Q psy13635 256 -----VLLVK-DRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDG-------NNRRELINE--NLPHV------FGIS- 313 (357)
Q Consensus 256 -----~~~~~-~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG-------~~~~~i~~~--~~~~p------~gia- 313 (357)
..... .--..|.++++|+.+ ++|++..-.+.|.+++.+. .....++.. -..+| .|++
T Consensus 317 l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~ 395 (595)
T 1fwx_A 317 ADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETL 395 (595)
T ss_dssp CCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTST
T ss_pred cCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEe
Confidence 11111 122579999999655 9999999999999999765 111111111 12233 2233
Q ss_pred -EECCEEEEEeCCC-CeE-----------EEEeCccCceeEEE
Q psy13635 314 -LLGDYVYWTDWQR-RSI-----------DRVNKITGNDREVI 343 (357)
Q Consensus 314 -~~~~~ly~td~~~-~~I-----------~~~~~~~g~~~~~i 343 (357)
.|+.+||.++..+ .++ ..++. +|...+++
T Consensus 396 ~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~di-s~~~m~lv 437 (595)
T 1fwx_A 396 DATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDI-SGDKMVLV 437 (595)
T ss_dssp TCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEEC-SSSSCEEE
T ss_pred CCCCCEEEEcCCCCccccccCCCCCCCcceEEEc-CCCcEEEE
Confidence 3578999999877 565 56676 45544444
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.03 E-value=8.1e-07 Score=83.88 Aligned_cols=235 Identities=15% Similarity=0.091 Sum_probs=157.7
Q ss_pred CeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCC--CEEEEEEcCCCceEEEEecCCCCcceeeeecc
Q psy13635 93 EMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSET--NKLEVSSLDGKKRKVLYWEDIDQPRAIASYKL 170 (357)
Q Consensus 93 ~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~--~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~ 170 (357)
+.|+..+++|.. ...+...-.....+++.+.++.|+++.... ..|...++.+.....+....
T Consensus 159 ~~i~i~d~~g~~----~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~------------ 222 (415)
T 2hqs_A 159 YELRVSDYDGYN----QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP------------ 222 (415)
T ss_dssp EEEEEEETTSCS----CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCS------------
T ss_pred ceEEEEcCCCCC----CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCC------------
Confidence 578888988764 333333334678899999888898887543 68999998776555443211
Q ss_pred CcccccCCceEEEeCCCCeEEEEeCCC--CeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEE
Q psy13635 171 PTIEVEHPDGVAVDWVARNLYWTDTGT--DRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERS 248 (357)
Q Consensus 171 ~~~~~~~p~glavD~~~~~lY~td~~~--~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~ 248 (357)
.....+++.|.+..|+++.... ..|+..++.+.....+.. .......++++|.+..|+++.......+|+..
T Consensus 223 -----~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~-~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~ 296 (415)
T 2hqs_A 223 -----RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD-GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKV 296 (415)
T ss_dssp -----SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCC-CSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred -----CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcC-CCCcccceEECCCCCEEEEEECCCCCcEEEEE
Confidence 2456788888888888776543 469999988765544433 33457789999987778887653223589999
Q ss_pred ecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCC--CCeEEEEeCCCCCeEEEecCCCCceEEEEEE--CCEEEEEeC
Q psy13635 249 LLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAK--TDKIEMIDFDGNNRRELINENLPHVFGISLL--GDYVYWTDW 324 (357)
Q Consensus 249 ~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~--~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~--~~~ly~td~ 324 (357)
++++.....+.. .......+++++++..|+++... ...|+..+.++.....+.. . .....+++. +..|+++..
T Consensus 297 d~~~~~~~~l~~-~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~-~-~~~~~~~~spdg~~l~~~s~ 373 (415)
T 2hqs_A 297 NINGGAPQRITW-EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSS-T-FLDETPSLAPNGTMVIYSSS 373 (415)
T ss_dssp ETTSSCCEECCC-SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCC-S-SSCEEEEECTTSSEEEEEEE
T ss_pred ECCCCCEEEEec-CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecC-C-CCcCCeEEcCCCCEEEEEEc
Confidence 998876554432 23456788999888888887754 4589999998776654432 2 256677775 456777665
Q ss_pred CCC--eEEEEeCccCceeEEEecccCCceee
Q psy13635 325 QRR--SIDRVNKITGNDREVIIERSCTGVTR 353 (357)
Q Consensus 325 ~~~--~I~~~~~~~g~~~~~i~~~l~~p~~i 353 (357)
..+ .|+.++. +|+....+..+-.....+
T Consensus 374 ~~~~~~l~~~d~-~g~~~~~l~~~~~~v~~~ 403 (415)
T 2hqs_A 374 QGMGSVLNLVST-DGRFKARLPATDGQVKFP 403 (415)
T ss_dssp ETTEEEEEEEET-TSCCEEECCCSSSEEEEE
T ss_pred CCCccEEEEEEC-CCCcEEEeeCCCCCCcCC
Confidence 444 7889998 566666665543344333
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.7e-07 Score=82.53 Aligned_cols=226 Identities=12% Similarity=0.093 Sum_probs=149.6
Q ss_pred CcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCC-CCcceeEEEEeCC--cCCceeEEEEc
Q psy13635 50 KDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDG-NNVGSKHNVITNG--LITPDGLAIDW 126 (357)
Q Consensus 50 ~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g-~~~~~~~~~~~~~--~~~p~glavd~ 126 (357)
..|+.+|+.+. ...........+.++++++.+..|+++. .+.|+..++++ .. ...+... ...+..+++.+
T Consensus 22 ~~i~~~d~~~~-~~~~~~~~~~~v~~~~~spdg~~l~~~~--~~~i~~~d~~~~~~----~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 22 SSIEIFNIRTR-KMRVVWQTPELFEAPNWSPDGKYLLLNS--EGLLYRLSLAGDPS----PEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp EEEEEEETTTT-EEEEEEEESSCCEEEEECTTSSEEEEEE--TTEEEEEESSSCCS----CEECCCTTCCCBCSCCEECT
T ss_pred eeEEEEeCCCC-ceeeeccCCcceEeeEECCCCCEEEEEc--CCeEEEEeCCCCCC----ceEeccccccccccceEECC
Confidence 45777887663 3344444455788999999888888875 56899999988 64 2222222 24567899998
Q ss_pred CCCeEEEEeCC---CCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCC--eEE
Q psy13635 127 LTEKLYWTDSE---TNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTD--RIE 201 (357)
Q Consensus 127 ~~~~ly~td~~---~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~--~I~ 201 (357)
.++.|+++... ..+|..++.++.....+... ..+..+++.+.+..|+++....+ +|+
T Consensus 95 dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------------------~~~~~~~~spdg~~l~~~~~~~~~~~l~ 156 (297)
T 2ojh_A 95 DGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKN------------------LPSYWHGWSPDGKSFTYCGIRDQVFDIY 156 (297)
T ss_dssp TSSEEEEEECTTTSSCEEEEEETTCCCCEECCSS------------------SSEEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred CCCEEEEEEeCCCCcceEEEEECCCCceEEeecC------------------CCccceEECCCCCEEEEEECCCCceEEE
Confidence 88888887732 57888888876654433211 13556778877888886655445 566
Q ss_pred EEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEE
Q psy13635 202 VCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWC 281 (357)
Q Consensus 202 ~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~ 281 (357)
.++.++.....+.. ....+..++++|.+..|+++.......+|+.++.++.....+. ........+++++.+..|+++
T Consensus 157 ~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~ 234 (297)
T 2ojh_A 157 SMDIDSGVETRLTH-GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT-DSAYGDWFPHPSPSGDKVVFV 234 (297)
T ss_dssp EEETTTCCEEECCC-SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC-CCSEEEEEEEECTTSSEEEEE
T ss_pred EEECCCCcceEccc-CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe-cCCcccCCeEECCCCCEEEEE
Confidence 66676655544432 3356789999998777888764222368888888776655543 222345678898877788776
Q ss_pred eCC----------CCeEEEEeCCCCCeEEEe
Q psy13635 282 DAK----------TDKIEMIDFDGNNRRELI 302 (357)
Q Consensus 282 d~~----------~~~I~~~~~dG~~~~~i~ 302 (357)
... ...|+..++++.....+.
T Consensus 235 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 265 (297)
T 2ojh_A 235 SYDADVFDHPRDLDVRVQLMDMDGGNVETLF 265 (297)
T ss_dssp EEETTCCSCCSSEEEEEEEEETTSCSCEEEE
T ss_pred EcCCCCCcccccCceEEEEEecCCCCceeee
Confidence 542 256899998876554443
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.2e-07 Score=93.46 Aligned_cols=281 Identities=12% Similarity=0.073 Sum_probs=171.2
Q ss_pred EEeecCCCCeEEEEEeCCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCC-----CCcce
Q psy13635 33 YALSHHVAAQMLLFATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDG-----NNVGS 107 (357)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g-----~~~~~ 107 (357)
.+++-++. ..++++....|+..|+.++ ....+......+..++++|++..|.++. ++.|+..++++ ..
T Consensus 85 ~~~~~spd-~~~~~~~~~~i~~~d~~~~-~~~~l~~~~~~~~~~~~SpdG~~la~~~--~~~i~v~~~~~~~~~~g~--- 157 (706)
T 2z3z_A 85 FRTLDAGR-GLVVLFTQGGLVGFDMLAR-KVTYLFDTNEETASLDFSPVGDRVAYVR--NHNLYIARGGKLGEGMSR--- 157 (706)
T ss_dssp EEEEETTT-TEEEEEETTEEEEEETTTT-EEEEEECCTTCCTTCEECTTSSEEEEEE--TTEEEEEECBCTTSCCCC---
T ss_pred eeEEECCC-CeEEEEECCEEEEEECCCC-ceEEccCCcccccCCcCCCCCCEEEEEE--CCeEEEEecCcccccCCC---
Confidence 34445555 6788888889999999773 3334433344566678999888888763 47899999887 43
Q ss_pred eEEEEeCCcC--------------CceeEEEEcCCCeEEEEeC--------------------------------CCCEE
Q psy13635 108 KHNVITNGLI--------------TPDGLAIDWLTEKLYWTDS--------------------------------ETNKL 141 (357)
Q Consensus 108 ~~~~~~~~~~--------------~p~glavd~~~~~ly~td~--------------------------------~~~~I 141 (357)
...+...+.. .+.++++.+.++.|+++.. ...+|
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l 237 (706)
T 2z3z_A 158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV 237 (706)
T ss_dssp CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence 1222222211 2578999998888888751 23567
Q ss_pred EEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCC----CeEEEEEcCCC-ceEEEecC
Q psy13635 142 EVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGT----DRIEVCRLEGT-HRKVLVNT 216 (357)
Q Consensus 142 ~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~----~~I~~~~~~g~-~~~~~~~~ 216 (357)
.+.++++.....+... ...-..+..+++.+.++.|+++.... ..|...+.++. ....+...
T Consensus 238 ~~~d~~~~~~~~~~~~--------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~ 303 (706)
T 2z3z_A 238 GIYHLATGKTVYLQTG--------------EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVE 303 (706)
T ss_dssp EEEETTTTEEEECCCC--------------SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred EEEECCCCceEeeccC--------------CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEc
Confidence 7777766543332110 00112345678887777888754332 27888888765 44444321
Q ss_pred C----CCCceEEEEeC--CCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceE-EEEecCCCEEEEEeCCCC---
Q psy13635 217 D----LVEPRAITLSP--AHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNG-ITLDVDNEKLYWCDAKTD--- 286 (357)
Q Consensus 217 ~----~~~P~giavd~--~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~g-iaid~~~~~lY~~d~~~~--- 286 (357)
. ......++++| .+..||.++... ..+|+.++.+|.....+. .+-..... ++++++++.||++....+
T Consensus 304 ~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g-~~~l~~~~~~~~~~~~l~-~~~~~v~~~~~~spdg~~l~~~~~~~~~~~ 381 (706)
T 2z3z_A 304 TDKHYVEPLHPLTFLPGSNNQFIWQSRRDG-WNHLYLYDTTGRLIRQVT-KGEWEVTNFAGFDPKGTRLYFESTEASPLE 381 (706)
T ss_dssp ECSSCCCCCSCCEECTTCSSEEEEEECTTS-SCEEEEEETTSCEEEECC-CSSSCEEEEEEECTTSSEEEEEESSSCTTC
T ss_pred cCCCeECccCCceeecCCCCEEEEEEccCC-ccEEEEEECCCCEEEecC-CCCeEEEeeeEEcCCCCEEEEEecCCCCce
Confidence 1 11235688988 644555554443 368999888776555553 22222334 789988889999877654
Q ss_pred -eEEEEeCCCCCeEEEecCCCCceEEEEEE--CCEEEEEeCC---CCeEEEEeCccCc
Q psy13635 287 -KIEMIDFDGNNRRELINENLPHVFGISLL--GDYVYWTDWQ---RRSIDRVNKITGN 338 (357)
Q Consensus 287 -~I~~~~~dG~~~~~i~~~~~~~p~gia~~--~~~ly~td~~---~~~I~~~~~~~g~ 338 (357)
.|+.++.++...+.+. .......+++. +..+.++... ...|+..+..+++
T Consensus 382 ~~l~~~d~~~~~~~~l~--~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 382 RHFYCIDIKGGKTKDLT--PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp BEEEEEETTCCCCEESC--CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred EEEEEEEcCCCCceecc--CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 8999998776554443 23345566665 3455544222 2568888875554
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-05 Score=78.60 Aligned_cols=284 Identities=11% Similarity=0.110 Sum_probs=181.0
Q ss_pred CCCCeEEEEEe-CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCc
Q psy13635 38 HVAAQMLLFAT-SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGL 116 (357)
Q Consensus 38 ~~~~~~l~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~ 116 (357)
++....++.+. ...|+..+.++ ..............++++.+....|. +-..++.|...+.++.. ...+....
T Consensus 271 ~~d~~~l~~~~~d~~i~~w~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~-t~~~d~~i~~w~~~~~~----~~~~~~~~ 344 (577)
T 2ymu_A 271 RPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIA-SASDDKTVKLWNRNGQH----LQTLTGHS 344 (577)
T ss_dssp CTTSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEE-EEETTSCEEEEETTSCE----EEEECCCS
T ss_pred cCCCCEEEEEeCCCEEEEEeCCC-cEEEEEecCCCCeEEEEECCCCCEEE-EEeCCCeEEEEeCCCCe----eEEEeCCC
Confidence 34444454444 45677788765 33333444556788999998666554 44456778888887763 33344444
Q ss_pred CCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC
Q psy13635 117 ITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG 196 (357)
Q Consensus 117 ~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~ 196 (357)
..+.++++.+.++.|. +-...+.|...+.++.....+.... ..+.++++.+.+..|. +-..
T Consensus 345 ~~v~~~~~s~~g~~l~-~~~~dg~v~~~~~~~~~~~~~~~~~-----------------~~v~~~~~s~dg~~l~-~~~~ 405 (577)
T 2ymu_A 345 SSVWGVAFSPDGQTIA-SASDDKTVKLWNRNGQLLQTLTGHS-----------------SSVRGVAFSPDGQTIA-SASD 405 (577)
T ss_dssp SCEEEEEECTTSSEEE-EEETTSEEEEEETTCCEEEEEECCS-----------------SCEEEEEECTTSSCEE-EEET
T ss_pred CCEEEEEECCCCCEEE-EEeCCCEEEEEcCCCCEEEEecCCC-----------------CCeEEEEECCCCCEEE-EEeC
Confidence 5678899997555554 4445788988888876655443211 2467788887665555 4444
Q ss_pred CCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCC
Q psy13635 197 TDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNE 276 (357)
Q Consensus 197 ~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~ 276 (357)
.+.|...+.+++....+.. .-....+++++|.+..|..+... +.|...+.++.....+. ..-....++++.+.+.
T Consensus 406 d~~v~~~~~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~~~~~d---~~v~~w~~~~~~~~~~~-~~~~~v~~~~~spd~~ 480 (577)
T 2ymu_A 406 DKTVKLWNRNGQLLQTLTG-HSSSVWGVAFSPDDQTIASASDD---KTVKLWNRNGQLLQTLT-GHSSSVRGVAFSPDGQ 480 (577)
T ss_dssp TSEEEEECTTCCEEEEEEC-CSSCEEEEEECTTSSEEEEEETT---SEEEEEETTSCEEEEEE-CCSSCEEEEEECTTSC
T ss_pred CCEEEEEeCCCCEEEEecC-CCCCeEEEEECCCCCEEEEEcCC---CEEEEEECCCCEEEEEc-CCCCCEEEEEEcCCCC
Confidence 5688888888876665543 33567889999986666665544 57887888776555543 3335568899986554
Q ss_pred EEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEE-CCEEEEEeCCCCeEEEEeCccCceeEEEecccCCceeee
Q psy13635 277 KLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLL-GDYVYWTDWQRRSIDRVNKITGNDREVIIERSCTGVTRR 354 (357)
Q Consensus 277 ~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~-~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~i~ 354 (357)
.| .+-...+.|...+.+|...+.+. ........+++. ++.+..+-...+.|...+. +|+....+.........+.
T Consensus 481 ~l-as~~~d~~i~iw~~~~~~~~~~~-~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~ 556 (577)
T 2ymu_A 481 TI-ASASDDKTVKLWNRNGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA 556 (577)
T ss_dssp EE-EEEETTSEEEEEETTSCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEE
T ss_pred EE-EEEeCCCEEEEEcCCCCEEEEEe-CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEE
Confidence 44 44445678888888887665554 344556778876 3444455555678887886 7777776655444444444
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.9e-05 Score=74.89 Aligned_cols=246 Identities=10% Similarity=-0.040 Sum_probs=153.0
Q ss_pred cEEEEEEEccCCEEEEEeCCCCeEEEEEcC--CCCcceeEEEEe--CCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcC
Q psy13635 72 EGAAIDYYYKKSMVCWTDHGTEMISCCTFD--GNNVGSKHNVIT--NGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD 147 (357)
Q Consensus 72 ~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~--g~~~~~~~~~~~--~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~ 147 (357)
.+.++++++.+..|+.+...++.|...++. +.. ....+. ..-..+.++++++.++.|+.++. .+.|..+++.
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~---~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-~g~v~~~~~~ 179 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN---VLKLRKRFCFSKRPNAISIAEDDTTVIIADK-FGDVYSIDIN 179 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS---CEEEEEEEECSSCEEEEEECTTSSEEEEEET-TSEEEEEETT
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc---eeeeeecccCCCCceEEEEcCCCCEEEEEeC-CCcEEEEecC
Confidence 478999999888887877777888888877 443 123322 22356789999987777776664 6788888875
Q ss_pred CCceEE-EEecCCCCcceeeeeccCcccccCCceEEEeCC--CCeEEEEeCCCCeEEEEEcCCCc-eEEEecCCCCCceE
Q psy13635 148 GKKRKV-LYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWV--ARNLYWTDTGTDRIEVCRLEGTH-RKVLVNTDLVEPRA 223 (357)
Q Consensus 148 g~~~~~-~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~--~~~lY~td~~~~~I~~~~~~g~~-~~~~~~~~~~~P~g 223 (357)
...... ... .+ ......+..+++.+. .+.++++....+.|...++.... ...+.......+..
T Consensus 180 ~~~~~~~~~~-~~------------~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~ 246 (450)
T 2vdu_B 180 SIPEEKFTQE-PI------------LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSS 246 (450)
T ss_dssp SCCCSSCCCC-CS------------EECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEE
T ss_pred Ccccccccce-ee------------ecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEE
Confidence 432210 000 00 011135677888876 24455555556788888877443 33434334456789
Q ss_pred EEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeC-------------------------CCCCceEEEEecCCCEE
Q psy13635 224 ITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKD-------------------------RLGWPNGITLDVDNEKL 278 (357)
Q Consensus 224 iavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~-------------------------~l~~P~giaid~~~~~l 278 (357)
++++ ....|+.+... +.|...++........+.. .-....++++.+.+..|
T Consensus 247 ~~~s-d~~~l~s~~~d---~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 322 (450)
T 2vdu_B 247 ICCG-KDYLLLSAGGD---DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFV 322 (450)
T ss_dssp EEEC-STTEEEEEESS---SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEE
T ss_pred EEEC-CCCEEEEEeCC---CeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEE
Confidence 9998 65566665543 5888888775544333321 11235688888778888
Q ss_pred EEEeCCCCeEEEEeC--CCC-C--eEEEecCCCCceEEEEEECCEEEEEeCCCC---------eEEEEeCccCce
Q psy13635 279 YWCDAKTDKIEMIDF--DGN-N--RRELINENLPHVFGISLLGDYVYWTDWQRR---------SIDRVNKITGND 339 (357)
Q Consensus 279 Y~~d~~~~~I~~~~~--dG~-~--~~~i~~~~~~~p~gia~~~~~ly~td~~~~---------~I~~~~~~~g~~ 339 (357)
|++....+.|...+. ... . ....+... ..+.++++..+.++++-.... .|+.++..+|+.
T Consensus 323 ~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~ 396 (450)
T 2vdu_B 323 AFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSF 396 (450)
T ss_dssp EEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTTEE
T ss_pred EEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCCeE
Confidence 888767788888887 322 1 11122223 678899999887777754322 677777755543
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.5e-05 Score=70.87 Aligned_cols=285 Identities=6% Similarity=-0.082 Sum_probs=171.8
Q ss_pred cCCCCeEEEEEe-CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCC
Q psy13635 37 HHVAAQMLLFAT-SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNG 115 (357)
Q Consensus 37 ~~~~~~~l~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 115 (357)
-++...+|+.+. ...|+..|+.................++++++.+..|+.+ ..++.|...++.... ...... .
T Consensus 40 ~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~---~~~~~~-~ 114 (369)
T 3zwl_B 40 YNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTG-SADYSIKLWDVSNGQ---CVATWK-S 114 (369)
T ss_dssp ECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE-ETTTEEEEEETTTCC---EEEEEE-C
T ss_pred EcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCc---EEEEee-c
Confidence 344555666665 4568899987755444454566678899999866666544 456789999988664 122332 4
Q ss_pred cCCceeEEEEcCCCeEEEEeCC----CCEEEEEEcCCCce-EEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeE
Q psy13635 116 LITPDGLAIDWLTEKLYWTDSE----TNKLEVSSLDGKKR-KVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNL 190 (357)
Q Consensus 116 ~~~p~glavd~~~~~ly~td~~----~~~I~~~~~~g~~~-~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~l 190 (357)
-..+..+++++.+..++.+... .+.|...++..... ..+..........+. ..........+++++.+..|
T Consensus 115 ~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l 190 (369)
T 3zwl_B 115 PVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII----THEGLDAATVAGWSTKGKYI 190 (369)
T ss_dssp SSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEE----CCTTCCCEEEEEECGGGCEE
T ss_pred CCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeecc----CCcCccceeEEEEcCCCCEE
Confidence 4568899999866666555432 27888877643321 111110000000000 01111256778888766666
Q ss_pred EEEeCCCCeEEEEEcCC-CceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEE
Q psy13635 191 YWTDTGTDRIEVCRLEG-THRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGI 269 (357)
Q Consensus 191 Y~td~~~~~I~~~~~~g-~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~gi 269 (357)
+.+. ..+.|...++.. ...............+++++|....|+.+... +.|...++........+. .-.....+
T Consensus 191 ~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~-~~~~~~~~ 265 (369)
T 3zwl_B 191 IAGH-KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRD---TNSFLVDVSTLQVLKKYE-TDCPLNTA 265 (369)
T ss_dssp EEEE-TTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT---SEEEEEETTTCCEEEEEE-CSSCEEEE
T ss_pred EEEc-CCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCC---ceEEEEECCCCceeeeec-CCCCceeE
Confidence 5544 457899999886 33333333344567899999976666666544 588888887665554443 33456789
Q ss_pred EEecCCCEEEEEeCCCC-------------eEEEEeCCCCCeEEEecCCCCceEEEEEE-CCEEEEEeCCCCeEEEEeCc
Q psy13635 270 TLDVDNEKLYWCDAKTD-------------KIEMIDFDGNNRRELINENLPHVFGISLL-GDYVYWTDWQRRSIDRVNKI 335 (357)
Q Consensus 270 aid~~~~~lY~~d~~~~-------------~I~~~~~dG~~~~~i~~~~~~~p~gia~~-~~~ly~td~~~~~I~~~~~~ 335 (357)
++++.+..++.+....+ .+...+.........+.........+++. ++.++++-...+.|...+..
T Consensus 266 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 266 VITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFE 345 (369)
T ss_dssp EECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEEC
T ss_pred EecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECc
Confidence 99887777777765433 56677765544444444445566778886 35555555556777766653
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=98.93 E-value=8e-07 Score=82.21 Aligned_cols=278 Identities=9% Similarity=-0.018 Sum_probs=161.0
Q ss_pred ecCCCCeEEEEEeC-Cc---EEEEEcCCCCcceEeccCCCcE-EEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEE
Q psy13635 36 SHHVAAQMLLFATS-KD---IRIANLSRPLKPVTIIKDLEEG-AAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHN 110 (357)
Q Consensus 36 ~~~~~~~~l~~~~~-~~---i~~~~~~~~~~~~~~~~~~~~~-~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~ 110 (357)
+-++....|++... .. |+.+|++++ ....+....... .++.+++++..|+++... ..|+..++++.. ...
T Consensus 42 ~~SpDg~~l~~~~~~~g~~~l~~~d~~~g-~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~-~~l~~~d~~~g~---~~~ 116 (388)
T 3pe7_A 42 CFTRDGSKLLFGGAFDGPWNYYLLDLNTQ-VATQLTEGRGDNTFGGFLSPDDDALFYVKDG-RNLMRVDLATLE---ENV 116 (388)
T ss_dssp CBCTTSCEEEEEECTTSSCEEEEEETTTC-EEEECCCSSCBCSSSCEECTTSSEEEEEETT-TEEEEEETTTCC---EEE
T ss_pred cCCCCCCEEEEEEcCCCCceEEEEeCCCC-ceEEeeeCCCCCccceEEcCCCCEEEEEeCC-CeEEEEECCCCc---cee
Confidence 34555566777664 33 999999773 344443333322 256799988999998753 589999998874 222
Q ss_pred EEeCCcCCc--eeEEEEcCCCeEEEE---------------------eCCCCEEEEEEcCCCceEEEEecCCCCcceeee
Q psy13635 111 VITNGLITP--DGLAIDWLTEKLYWT---------------------DSETNKLEVSSLDGKKRKVLYWEDIDQPRAIAS 167 (357)
Q Consensus 111 ~~~~~~~~p--~glavd~~~~~ly~t---------------------d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~ 167 (357)
+....-... ...++++.+..+... ......|.++++.+...+.+....
T Consensus 117 ~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~--------- 187 (388)
T 3pe7_A 117 VYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQEN--------- 187 (388)
T ss_dssp EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEES---------
T ss_pred eeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCC---------
Confidence 222211111 112335444444322 123367888888766555554221
Q ss_pred eccCcccccCCceEEEeC-CCCeEEEEeCC-----CCeEEEEEcCCCceEEEecCCC-CCceEEEEeCCCCEEEEE-eCC
Q psy13635 168 YKLPTIEVEHPDGVAVDW-VARNLYWTDTG-----TDRIEVCRLEGTHRKVLVNTDL-VEPRAITLSPAHGYLFWS-DWN 239 (357)
Q Consensus 168 ~~~~~~~~~~p~glavD~-~~~~lY~td~~-----~~~I~~~~~~g~~~~~~~~~~~-~~P~giavd~~~g~Ly~~-d~~ 239 (357)
.....+++.| .++.|.++... ..+|+.++.+|...+.+..... ......+++|.+..|+++ +..
T Consensus 188 --------~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~ 259 (388)
T 3pe7_A 188 --------QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLK 259 (388)
T ss_dssp --------SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred --------ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCC
Confidence 1345677887 66677665543 3489999998877666544221 134567899887767554 433
Q ss_pred CC-CCeEEEEecCCCceEEEeeCCC-----CCceEEEEecCCCEEEEEe--------CCCCeEEEEeCCCCCeEEEecCC
Q psy13635 240 EK-RPKIERSLLNGGERVLLVKDRL-----GWPNGITLDVDNEKLYWCD--------AKTDKIEMIDFDGNNRRELINEN 305 (357)
Q Consensus 240 ~~-~~~I~~~~~dg~~~~~~~~~~l-----~~P~giaid~~~~~lY~~d--------~~~~~I~~~~~dG~~~~~i~~~~ 305 (357)
.. ...|+..++++...+.+..... ..|.++++.+++..|+++- .+...|+.+++++...+.+....
T Consensus 260 ~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~ 339 (388)
T 3pe7_A 260 GSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHD 339 (388)
T ss_dssp TCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECC
T ss_pred CCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEecccc
Confidence 22 1139999998877655533211 1144456666677777653 45668999999887665554422
Q ss_pred CC----------ceEEEEE--ECCEEEEEeCCC--CeEEEEeCc
Q psy13635 306 LP----------HVFGISL--LGDYVYWTDWQR--RSIDRVNKI 335 (357)
Q Consensus 306 ~~----------~p~gia~--~~~~ly~td~~~--~~I~~~~~~ 335 (357)
.. ....+++ ++..|+++.... ..|++++..
T Consensus 340 ~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~ 383 (388)
T 3pe7_A 340 TSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLP 383 (388)
T ss_dssp CCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred CcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECC
Confidence 20 2334455 356788876543 457777763
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=98.92 E-value=2.5e-05 Score=70.06 Aligned_cols=273 Identities=8% Similarity=-0.016 Sum_probs=169.0
Q ss_pred EeecCCCCeEEEEEeCCcEEEEEcCCCCc---ceEec--cCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCccee
Q psy13635 34 ALSHHVAAQMLLFATSKDIRIANLSRPLK---PVTII--KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSK 108 (357)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~i~~~~~~~~~~---~~~~~--~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~ 108 (357)
++.-++...+++.+....|+..++..... ..... ........+++++.++.|+.+ ..++.|...+++.... ..
T Consensus 56 ~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~-~~ 133 (337)
T 1gxr_A 56 AVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVG-GEASTLSIWDLAAPTP-RI 133 (337)
T ss_dssp EEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEE-ESSSEEEEEECCCC---EE
T ss_pred EEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEE-cCCCcEEEEECCCCCc-ce
Confidence 33445566778777777788999876321 12111 345678899999876666655 4457888888876631 11
Q ss_pred EEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCC
Q psy13635 109 HNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVAR 188 (357)
Q Consensus 109 ~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~ 188 (357)
.............+++.+.++.|+ +-...+.|...++........... .-..+..+++++.+.
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~v~~~d~~~~~~~~~~~~----------------~~~~i~~~~~~~~~~ 196 (337)
T 1gxr_A 134 KAELTSSAPACYALAISPDSKVCF-SCCSDGNIAVWDLHNQTLVRQFQG----------------HTDGASCIDISNDGT 196 (337)
T ss_dssp EEEEECSSSCEEEEEECTTSSEEE-EEETTSCEEEEETTTTEEEEEECC----------------CSSCEEEEEECTTSS
T ss_pred eeecccCCCceEEEEECCCCCEEE-EEeCCCcEEEEeCCCCceeeeeec----------------ccCceEEEEECCCCC
Confidence 233334445578899987555555 444567899999876543333211 112467788887655
Q ss_pred eEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceE
Q psy13635 189 NLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNG 268 (357)
Q Consensus 189 ~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~g 268 (357)
.|+. ....+.|...++.......... ....+..++++|.+..|+.+... +.|...++.......+. .....+.+
T Consensus 197 ~l~~-~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~---~~i~~~~~~~~~~~~~~-~~~~~v~~ 270 (337)
T 1gxr_A 197 KLWT-GGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMES---SNVEVLHVNKPDKYQLH-LHESCVLS 270 (337)
T ss_dssp EEEE-EETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETT---SCEEEEETTSSCEEEEC-CCSSCEEE
T ss_pred EEEE-EecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCC---CcEEEEECCCCCeEEEc-CCccceeE
Confidence 5554 4456789999987654433332 33567899999987777776654 58888888876654442 33456789
Q ss_pred EEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEE-CCEEEEEeCCCCeEEEEe
Q psy13635 269 ITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLL-GDYVYWTDWQRRSIDRVN 333 (357)
Q Consensus 269 iaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~-~~~ly~td~~~~~I~~~~ 333 (357)
+++.+.+..|+ +-...+.|...+.......... .....+..+++. ++..+++-...+.|...+
T Consensus 271 ~~~~~~~~~l~-~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 271 LKFAYCGKWFV-STGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp EEECTTSSEEE-EEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred EEECCCCCEEE-EecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 99986555554 4445788999998665443222 234456777776 333334333456665443
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=98.92 E-value=2.2e-07 Score=88.95 Aligned_cols=217 Identities=12% Similarity=0.063 Sum_probs=135.4
Q ss_pred EEEEeCCcCCceeEEEEcCCC-eEEEEeCCCCEEEEEEcCCCce-EEEEe--cCCCCcceeeeeccCcccccCCceEEEe
Q psy13635 109 HNVITNGLITPDGLAIDWLTE-KLYWTDSETNKLEVSSLDGKKR-KVLYW--EDIDQPRAIASYKLPTIEVEHPDGVAVD 184 (357)
Q Consensus 109 ~~~~~~~~~~p~glavd~~~~-~ly~td~~~~~I~~~~~~g~~~-~~~~~--~~~~~p~~i~~~~~~~~~~~~p~glavD 184 (357)
.+++..++..|.+|++.+.+. +||+++. .++|.+++.+|... ..+.. ..... ++ .......+.|||++
T Consensus 6 v~~va~gL~~P~~~a~~pdG~~rl~V~er-~G~i~~~~~~g~~~~~~~~~~~~~~~~--g~-----~~~~e~Gllgia~~ 77 (463)
T 2wg3_C 6 IQEVVSGLRQPVGALHSGDGSQRLFILEK-EGYVKILTPEGEIFKEPYLDIHKLVQS--GI-----KGGDERGLLSLAFH 77 (463)
T ss_dssp EEEEEEEESSEEEEECCSSSSCCEEEEET-TTEEEEECTTSCBCSSCSEECTTTBCC--CC-----SSSCCCSEEEEEEC
T ss_pred EEEeccCCCCceEEEECCCCCeEEEEEeC-CceEEEEeCCCCeeeeeecCCcceecc--Cc-----cccCCCcceeeEeC
Confidence 567778899999999998653 6999997 57999998776531 11111 00000 00 00113467899999
Q ss_pred CC---CCeEEEEeCC--C----------CeEEEEEcCCC--------ceEEEec----CCCCCceEEEEeCCCCEEEEEe
Q psy13635 185 WV---ARNLYWTDTG--T----------DRIEVCRLEGT--------HRKVLVN----TDLVEPRAITLSPAHGYLFWSD 237 (357)
Q Consensus 185 ~~---~~~lY~td~~--~----------~~I~~~~~~g~--------~~~~~~~----~~~~~P~giavd~~~g~Ly~~d 237 (357)
+. ++.||++... . .+|.++.++.. ..++++. ........|+++|+ |+||++.
T Consensus 78 P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpD-G~LYv~~ 156 (463)
T 2wg3_C 78 PNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPD-GFLYIIL 156 (463)
T ss_dssp TTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTT-SCEEEEE
T ss_pred CCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCC-CcEEEEe
Confidence 75 6899987542 1 37888876521 1233332 22345678999985 8999995
Q ss_pred CCCC---------------CCeEEEEecCCCc-------------------eEEEeeCCCCCceEEEEecCCC------E
Q psy13635 238 WNEK---------------RPKIERSLLNGGE-------------------RVLLVKDRLGWPNGITLDVDNE------K 277 (357)
Q Consensus 238 ~~~~---------------~~~I~~~~~dg~~-------------------~~~~~~~~l~~P~giaid~~~~------~ 277 (357)
-... .++|.|++.||.. +.+++..++.+|.|+++|+..+ .
T Consensus 157 Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~ 236 (463)
T 2wg3_C 157 GDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLT 236 (463)
T ss_dssp CCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEE
T ss_pred CCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceE
Confidence 3211 4789999999941 3467778999999999997643 7
Q ss_pred EEEEeC-CC----CeEEEEeCCCCC---eEEEecCC--CCceEEEEEEC--------CEEEEEeCCCCeEEEEeCc
Q psy13635 278 LYWCDA-KT----DKIEMIDFDGNN---RRELINEN--LPHVFGISLLG--------DYVYWTDWQRRSIDRVNKI 335 (357)
Q Consensus 278 lY~~d~-~~----~~I~~~~~dG~~---~~~i~~~~--~~~p~gia~~~--------~~ly~td~~~~~I~~~~~~ 335 (357)
+|.+|. +. ..|..+...+.. ........ ...|.|+++.. +.++++++. ++|+++...
T Consensus 237 ~~~~D~~G~~~~~~ei~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~-g~i~~~~~~ 311 (463)
T 2wg3_C 237 ILCSDSNGKNRSSARILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRN-GNFLTLQQS 311 (463)
T ss_dssp EEEECC------CEEEEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETT-SCEEEEEC-
T ss_pred EEecccCCCCCCCCeEeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCC-CcEEEEEeC
Confidence 788885 22 345555322210 11111111 14688999864 348999987 789888753
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.8e-05 Score=75.77 Aligned_cols=285 Identities=11% Similarity=0.100 Sum_probs=178.4
Q ss_pred ecCCCCeEEEEEe-CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeC
Q psy13635 36 SHHVAAQMLLFAT-SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN 114 (357)
Q Consensus 36 ~~~~~~~~l~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 114 (357)
+-++....++.+. ...|+..+.++ ............+.++++.+.+..|. +-..++.|+..+.++.. ...+..
T Consensus 228 ~~s~dg~~l~~~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~v~~~~d~~~l~-~~~~d~~i~~w~~~~~~----~~~~~~ 301 (577)
T 2ymu_A 228 AFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVNGVAFRPDGQTIA-SASDDKTVKLWNRNGQL----LQTLTG 301 (577)
T ss_dssp EECTTSSCEEEEETTSCEEEECTTS-CEEEEECCCSSCEEEEEECTTSSEEE-EEETTSCEEEEETTSCE----EEEECC
T ss_pred EECCCCCEEEEEeCCCEEEEEeCCC-CEEEEEecCCCCEEEEEEcCCCCEEE-EEeCCCEEEEEeCCCcE----EEEEec
Confidence 3344444454444 45577777755 33344444556788999998666555 44455678877877653 344444
Q ss_pred CcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEe
Q psy13635 115 GLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTD 194 (357)
Q Consensus 115 ~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td 194 (357)
....+.++++.+.+. ...+-...+.|...+.++.....+.. .-..+.++++.+.+..|. +-
T Consensus 302 h~~~v~~~~~~~~~~-~l~t~~~d~~i~~w~~~~~~~~~~~~-----------------~~~~v~~~~~s~~g~~l~-~~ 362 (577)
T 2ymu_A 302 HSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRNGQHLQTLTG-----------------HSSSVWGVAFSPDGQTIA-SA 362 (577)
T ss_dssp CSSCEEEEEECTTSS-EEEEEETTSCEEEEETTSCEEEEECC-----------------CSSCEEEEEECTTSSEEE-EE
T ss_pred CCCCeEEEEECCCCC-EEEEEeCCCeEEEEeCCCCeeEEEeC-----------------CCCCEEEEEECCCCCEEE-EE
Confidence 445678899997544 45555567889888988776554421 112456788887665554 44
Q ss_pred CCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecC
Q psy13635 195 TGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVD 274 (357)
Q Consensus 195 ~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~ 274 (357)
...+.|...+.++.....+.. ....+.+++++|....|..+... +.|...+.++.....+. ..-....++++.+.
T Consensus 363 ~~dg~v~~~~~~~~~~~~~~~-~~~~v~~~~~s~dg~~l~~~~~d---~~v~~~~~~~~~~~~~~-~~~~~v~~~~~s~d 437 (577)
T 2ymu_A 363 SDDKTVKLWNRNGQLLQTLTG-HSSSVRGVAFSPDGQTIASASDD---KTVKLWNRNGQLLQTLT-GHSSSVWGVAFSPD 437 (577)
T ss_dssp ETTSEEEEEETTCCEEEEEEC-CSSCEEEEEECTTSSCEEEEETT---SEEEEECTTCCEEEEEE-CCSSCEEEEEECTT
T ss_pred eCCCEEEEEcCCCCEEEEecC-CCCCeEEEEECCCCCEEEEEeCC---CEEEEEeCCCCEEEEec-CCCCCeEEEEECCC
Confidence 445788888888876665543 34567899999876666555544 57777787776555443 33345678999866
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEE-CCEEEEEeCCCCeEEEEeCccCceeEEEecccCCceee
Q psy13635 275 NEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLL-GDYVYWTDWQRRSIDRVNKITGNDREVIIERSCTGVTR 353 (357)
Q Consensus 275 ~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~-~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~i 353 (357)
+..|..+ ...+.|...+.++.....+. ........+++. ++.+..+-...+.|...+. +|+....+...-.....+
T Consensus 438 ~~~l~~~-~~d~~v~~w~~~~~~~~~~~-~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l 514 (577)
T 2ymu_A 438 DQTIASA-SDDKTVKLWNRNGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGV 514 (577)
T ss_dssp SSEEEEE-ETTSEEEEEETTSCEEEEEE-CCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEE
T ss_pred CCEEEEE-cCCCEEEEEECCCCEEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEE
Confidence 5555544 45678888888886655443 344456777776 3555555556677777776 677666665444444443
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=98.90 E-value=1.8e-06 Score=86.15 Aligned_cols=238 Identities=12% Similarity=0.075 Sum_probs=147.5
Q ss_pred ccCCE-EEEEeCCCCeEEEEEcC--C-CCcceeEEEEeC-----CcCCceeEEEEcCCCeEEEEeCC---------CCEE
Q psy13635 80 YKKSM-VCWTDHGTEMISCCTFD--G-NNVGSKHNVITN-----GLITPDGLAIDWLTEKLYWTDSE---------TNKL 141 (357)
Q Consensus 80 ~~~~~-ly~~d~~~~~I~~~~~~--g-~~~~~~~~~~~~-----~~~~p~glavd~~~~~ly~td~~---------~~~I 141 (357)
|+++. |+++......|+.++++ | .. ...+.. ....+.++++.+.++.|+++... ..+|
T Consensus 88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~----~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i 163 (662)
T 3azo_A 88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAV----PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFL 163 (662)
T ss_dssp SSSSCEEEEEBTTTCCEEEECTTSTTCCC----CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEE
T ss_pred cCCCeEEEEEECCCCeEEEEcCCCCCCCC----CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEE
Confidence 77788 88888777889999998 4 43 222322 23456789999988889887643 2578
Q ss_pred EEEEcCC------CceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCC-------CeEEEEEcCC-
Q psy13635 142 EVSSLDG------KKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGT-------DRIEVCRLEG- 207 (357)
Q Consensus 142 ~~~~~~g------~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~-------~~I~~~~~~g- 207 (357)
+++++++ ...+.+...+ -....++++.+.++.|+++.... ..|+..++++
T Consensus 164 ~~~~~~~~~~~~~~~~~~l~~~~----------------~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~ 227 (662)
T 3azo_A 164 AAVPLDGSAAADRSAVRELSDDA----------------HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTED 227 (662)
T ss_dssp EEEETTSTTTTCGGGSEESSCSC----------------SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTT
T ss_pred EEEECCCCccccCCceeEEEecC----------------CCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCC
Confidence 8899887 5444332010 11345567888888898876432 4799999884
Q ss_pred C---ceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCC--CCC------ceEEEEecCCC
Q psy13635 208 T---HRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDR--LGW------PNGITLDVDNE 276 (357)
Q Consensus 208 ~---~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~--l~~------P~giaid~~~~ 276 (357)
. ....+.......+..++++|.+. +|++.......+|++.+.++...+.+.... ... ...+++.+ ++
T Consensus 228 g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~-~~ 305 (662)
T 3azo_A 228 GRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLA-NG 305 (662)
T ss_dssp SCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECT-TS
T ss_pred CcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeC-CC
Confidence 3 34444433235678899998755 666554322248999998766555554321 111 24566653 45
Q ss_pred EEEEEe-CCCCeEEEEeCCCCCeEEEecCCCCceEEE-EEECCEEEEEeCCC---CeEEEEeCccCcee
Q psy13635 277 KLYWCD-AKTDKIEMIDFDGNNRRELINENLPHVFGI-SLLGDYVYWTDWQR---RSIDRVNKITGNDR 340 (357)
Q Consensus 277 ~lY~~d-~~~~~I~~~~~dG~~~~~i~~~~~~~p~gi-a~~~~~ly~td~~~---~~I~~~~~~~g~~~ 340 (357)
+++++. .+..+|+.++.++...+.+. .......++ +.+++.++++.... ..|+.++..+|+..
T Consensus 306 ~~~~~~~~~~~~l~~~d~~~~~~~~l~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~ 373 (662)
T 3azo_A 306 LIAVVHGKGAAVLGILDPESGELVDAA-GPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRAR 373 (662)
T ss_dssp CEEEEEBSSSCEEEEEETTTTEEEECC-SSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred EEEEEEEcCccEEEEEECCCCcEEEec-CCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceE
Confidence 555543 34557888898876655443 233344566 77777766654332 36888887555543
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.2e-06 Score=88.51 Aligned_cols=280 Identities=12% Similarity=0.073 Sum_probs=169.1
Q ss_pred EEeecCCCCeEEEEEeCCcEEEEEcCCCC--cceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEE
Q psy13635 33 YALSHHVAAQMLLFATSKDIRIANLSRPL--KPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHN 110 (357)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~ 110 (357)
.+++-++...+|+++....|+.+|+.++. ....+......+..++++|++..|.++.. +.|+..++++.. ..
T Consensus 112 ~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~--~~i~~~d~~~g~----~~ 185 (741)
T 2ecf_A 112 VDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG--RNLWVIDLASGR----QM 185 (741)
T ss_dssp CCCEECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET--TEEEEEETTTTE----EE
T ss_pred ceeEECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC--CcEEEEecCCCC----EE
Confidence 34555667778999888899999998742 34444444567889999999888887763 589999998763 22
Q ss_pred EEeCCcC-----------------CceeEEEEcCCCeEEEEeCCCC--------------------------------EE
Q psy13635 111 VITNGLI-----------------TPDGLAIDWLTEKLYWTDSETN--------------------------------KL 141 (357)
Q Consensus 111 ~~~~~~~-----------------~p~glavd~~~~~ly~td~~~~--------------------------------~I 141 (357)
.+...-. .+.++++.+.++.|+++....+ +|
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 2222111 2578999998888988753321 55
Q ss_pred EEEEcCC-CceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeC--C--CCeEEEEEcCCCceEEEecC
Q psy13635 142 EVSSLDG-KKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDT--G--TDRIEVCRLEGTHRKVLVNT 216 (357)
Q Consensus 142 ~~~~~~g-~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~--~--~~~I~~~~~~g~~~~~~~~~ 216 (357)
..+++++ .....+... ...-..+..+++ +.+..|+++.. . ...|...++++.....+...
T Consensus 266 ~~~d~~~~~~~~~~~~~--------------~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~ 330 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLG--------------KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHE 330 (741)
T ss_dssp EEECSSTTCCCEEECCC--------------SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEE
T ss_pred EEEECCCCCceEEecCC--------------CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEc
Confidence 6666655 433322110 001123467788 78888887653 2 24788889886655544432
Q ss_pred CCC----CceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEE-EEecCCCEEEEEeCCC----Ce
Q psy13635 217 DLV----EPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGI-TLDVDNEKLYWCDAKT----DK 287 (357)
Q Consensus 217 ~~~----~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~gi-aid~~~~~lY~~d~~~----~~ 287 (357)
... ....++++|.+. ++++.......+|+..+.+|. ...+. ..-.....+ +++++++.||++.... .+
T Consensus 331 ~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~~~-~~~l~-~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~ 407 (741)
T 2ecf_A 331 TSPTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYRIDSKGK-AAALT-HGNWSVDELLAVDEKAGLAYFRAGIESARESQ 407 (741)
T ss_dssp ECSSCCCCCSCCEECTTSC-EEEEECTTSSCEEEEECSSSC-EEESC-CSSSCEEEEEEEETTTTEEEEEECSSCTTCBE
T ss_pred CCCCcCCcCCceEECCCCe-EEEEecCCCccEEEEEcCCCC-eeeee-ecceEEEeEeEEeCCCCEEEEEEeCCCCceEE
Confidence 211 235788998744 555544322358999998877 44332 332334455 5888888898876543 46
Q ss_pred EEEEeCCCCCeEEEecCCCCceEEEEEE--CCEEEEEeCCC---CeEEEEeCccCce
Q psy13635 288 IEMIDFDGNNRRELINENLPHVFGISLL--GDYVYWTDWQR---RSIDRVNKITGND 339 (357)
Q Consensus 288 I~~~~~dG~~~~~i~~~~~~~p~gia~~--~~~ly~td~~~---~~I~~~~~~~g~~ 339 (357)
|+.++.+|...+.+.. ......+++. +..+.++-... ..++..+. +++.
T Consensus 408 l~~~~~~g~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~-~~~~ 461 (741)
T 2ecf_A 408 IYAVPLQGGQPQRLSK--APGMHSASFARNASVYVDSWSNNSTPPQIELFRA-NGEK 461 (741)
T ss_dssp EEEEETTCCCCEECCC--SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEET-TSCE
T ss_pred EEEEEcCCCCeeeccc--CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEc-CCCe
Confidence 8888888876554432 2333455554 34554432221 34555655 3443
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.5e-06 Score=80.53 Aligned_cols=241 Identities=12% Similarity=0.032 Sum_probs=159.7
Q ss_pred CCcEEEEEEEccCCEEEEEeCCC-----CeEEEEEcCCCCc----ceeE-EE-----EeCCcCCceeEEEEcCCCeEEEE
Q psy13635 70 LEEGAAIDYYYKKSMVCWTDHGT-----EMISCCTFDGNNV----GSKH-NV-----ITNGLITPDGLAIDWLTEKLYWT 134 (357)
Q Consensus 70 ~~~~~~i~~d~~~~~ly~~d~~~-----~~I~~~~~~g~~~----~~~~-~~-----~~~~~~~p~glavd~~~~~ly~t 134 (357)
-.-|.|+++|..+++||++=..- -.+-.+..++... .... .- -..++.++.++.+|. .++|++.
T Consensus 25 n~~P~gv~vd~~~gRiFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~p~ll~PYP~w~~~~~lvsV~~v~iD~-~~rLWVL 103 (381)
T 3q6k_A 25 NMISTAFAYDAEGEKLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSGHKTGKELTSIYQPVIDD-CRRLWVV 103 (381)
T ss_dssp GCCCCEEEEETTTTEEEEECCTTSTTCSCSEEEEEHHHHTTCTTCSSCCBEECTTCSSSCSSSCEEEEEECT-TCEEEEE
T ss_pred ccceeeeeeecCCCcEEEEeCCCCCCCCcEEEEEeCCCCcccccCCcccccCCCCCccccceEEeeEEEEcC-CCcEEEE
Confidence 33578898864589999985542 2456666542100 0001 11 124688999999995 8899999
Q ss_pred eCCC---------------CEEEEEEcCCC--ce-EEEE-ecCCCCcceeeeeccCcccccCCceEEEe-C--C----CC
Q psy13635 135 DSET---------------NKLEVSSLDGK--KR-KVLY-WEDIDQPRAIASYKLPTIEVEHPDGVAVD-W--V----AR 188 (357)
Q Consensus 135 d~~~---------------~~I~~~~~~g~--~~-~~~~-~~~~~~p~~i~~~~~~~~~~~~p~glavD-~--~----~~ 188 (357)
|.+. -+|..+++... .. +++. +..... .-...++|+|| . . ++
T Consensus 104 DtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~------------~~S~l~di~VD~~~~~~~c~~~ 171 (381)
T 3q6k_A 104 DIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVE------------KPTYFGGFAVDVANPKGDCSET 171 (381)
T ss_dssp ECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCC------------CGGGEEEEEEEESCTTTTSCSE
T ss_pred eCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcc------------cCCccceEEEecccCCCCCCcc
Confidence 9762 16778887665 22 2222 122111 11246789999 2 1 57
Q ss_pred eEEEEeCCCCeEEEEEcCC-CceEEEec----C--------C-----CCCceEEEEeCC----CCEEEEEeCCCCCCeEE
Q psy13635 189 NLYWTDTGTDRIEVCRLEG-THRKVLVN----T--------D-----LVEPRAITLSPA----HGYLFWSDWNEKRPKIE 246 (357)
Q Consensus 189 ~lY~td~~~~~I~~~~~~g-~~~~~~~~----~--------~-----~~~P~giavd~~----~g~Ly~~d~~~~~~~I~ 246 (357)
..|++|.+...|.++++.. +..+++.. + + .....|||++|. .+.|||.--.+ .+++
T Consensus 172 ~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss--~~ly 249 (381)
T 3q6k_A 172 FVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA--IKVY 249 (381)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC--SEEE
T ss_pred EEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC--CcEE
Confidence 8999999988999999874 33343321 0 0 135679999987 78999999885 4899
Q ss_pred EEecC----C---CceEEEeeCC-CCCceEEEEecCCCEEEEEeCCCCeEEEEeCCC-----CCeEEEec-CCCCceEEE
Q psy13635 247 RSLLN----G---GERVLLVKDR-LGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDG-----NNRRELIN-ENLPHVFGI 312 (357)
Q Consensus 247 ~~~~d----g---~~~~~~~~~~-l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG-----~~~~~i~~-~~~~~p~gi 312 (357)
++..+ . ...+.+...+ .....++++|..+|.||+++...+.|.+.+.++ .+...+.. ..+..|.++
T Consensus 250 ~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~ 329 (381)
T 3q6k_A 250 SVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDI 329 (381)
T ss_dssp EEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEE
T ss_pred EEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeE
Confidence 88732 1 2223333332 244557888767899999999999999999988 34455544 357799999
Q ss_pred EEE-CCEEEEEeCC
Q psy13635 313 SLL-GDYVYWTDWQ 325 (357)
Q Consensus 313 a~~-~~~ly~td~~ 325 (357)
+++ +|+||++...
T Consensus 330 ~i~~~g~Lwv~sn~ 343 (381)
T 3q6k_A 330 SVDSKGGLWFMSNG 343 (381)
T ss_dssp EECTTSCEEEEECS
T ss_pred EECCCCeEEEEECc
Confidence 997 6899998744
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.7e-05 Score=71.06 Aligned_cols=250 Identities=10% Similarity=-0.022 Sum_probs=158.4
Q ss_pred cCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEe--CCcCCceeEEEEcCCCeEEEEeCCCCEEEEEE
Q psy13635 68 KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT--NGLITPDGLAIDWLTEKLYWTDSETNKLEVSS 145 (357)
Q Consensus 68 ~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~--~~~~~p~glavd~~~~~ly~td~~~~~I~~~~ 145 (357)
.......++++++.+..|+.+. ++.|...+++..........+. ..-..+..+++.+.++.|+. -...+.|...+
T Consensus 49 ~h~~~v~~~~~~~~~~~l~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~~d 125 (337)
T 1gxr_A 49 NHGEVVCAVTISNPTRHVYTGG--KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIV-GGEASTLSIWD 125 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC--BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEE-EESSSEEEEEE
T ss_pred cCCCceEEEEEecCCcEEEEcC--CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEE-EcCCCcEEEEE
Confidence 4455678899998777666655 7888888887653211122222 33355788999975555554 44578999999
Q ss_pred cCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEE
Q psy13635 146 LDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAIT 225 (357)
Q Consensus 146 ~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~gia 225 (357)
++.......... .........+++.+.+..|+.+. ..+.|...++...............+..++
T Consensus 126 ~~~~~~~~~~~~--------------~~~~~~i~~~~~~~~~~~l~~~~-~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~ 190 (337)
T 1gxr_A 126 LAAPTPRIKAEL--------------TSSAPACYALAISPDSKVCFSCC-SDGNIAVWDLHNQTLVRQFQGHTDGASCID 190 (337)
T ss_dssp CCCC--EEEEEE--------------ECSSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred CCCCCcceeeec--------------ccCCCceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCceeeeeecccCceEEEE
Confidence 876543222110 01112456788887655555444 457899999876554444444456788999
Q ss_pred EeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCC
Q psy13635 226 LSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINEN 305 (357)
Q Consensus 226 vd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~ 305 (357)
++|....|+.+... +.|...++.......... .-..+..+++.+.+..|+.+. ..+.|...+.+......+ ...
T Consensus 191 ~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~~~~i~~~~~~~~~~~~~-~~~ 264 (337)
T 1gxr_A 191 ISNDGTKLWTGGLD---NTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKPDKYQL-HLH 264 (337)
T ss_dssp ECTTSSEEEEEETT---SEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTSSCEEEE-CCC
T ss_pred ECCCCCEEEEEecC---CcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEc-CCCcEEEEECCCCCeEEE-cCC
Confidence 99876667666544 588888887665544433 234568899987666666554 467899999887665443 234
Q ss_pred CCceEEEEEE-CCEEEEEeCCCCeEEEEeCccCceeE
Q psy13635 306 LPHVFGISLL-GDYVYWTDWQRRSIDRVNKITGNDRE 341 (357)
Q Consensus 306 ~~~p~gia~~-~~~ly~td~~~~~I~~~~~~~g~~~~ 341 (357)
...+..+++. ++.++++-...+.|...+..+++...
T Consensus 265 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~ 301 (337)
T 1gxr_A 265 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF 301 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred ccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEE
Confidence 4556778886 34455555566888888876666553
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.1e-05 Score=72.93 Aligned_cols=291 Identities=7% Similarity=-0.067 Sum_probs=167.9
Q ss_pred EeecCCCCe-EEEEEeC-CcEEEEEc----CCCC------cceEecc----------CCCcEEEEEEEccCCEEEEEeCC
Q psy13635 34 ALSHHVAAQ-MLLFATS-KDIRIANL----SRPL------KPVTIIK----------DLEEGAAIDYYYKKSMVCWTDHG 91 (357)
Q Consensus 34 ~~~~~~~~~-~l~~~~~-~~i~~~~~----~~~~------~~~~~~~----------~~~~~~~i~~d~~~~~ly~~d~~ 91 (357)
++.-++... +|+.+.. ..|+..++ ..+. ....... .......+++++.+..|+.+. .
T Consensus 50 ~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~ 128 (425)
T 1r5m_A 50 SSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGV-E 128 (425)
T ss_dssp EEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEE-T
T ss_pred EEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEe-C
Confidence 444455555 6666664 55888888 5533 1222222 233788999998666666554 4
Q ss_pred CCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccC
Q psy13635 92 TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLP 171 (357)
Q Consensus 92 ~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~ 171 (357)
++.|...+.++.. ...+......+..+++.+.++.|+.+. ..+.|...++...............+..+.... .
T Consensus 129 dg~i~i~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~ 202 (425)
T 1r5m_A 129 NGELRLWNKTGAL----LNVLNFHRAPIVSVKWNKDGTHIISMD-VENVTILWNVISGTVMQHFELKETGGSSINAEN-H 202 (425)
T ss_dssp TSCEEEEETTSCE----EEEECCCCSCEEEEEECTTSSEEEEEE-TTCCEEEEETTTTEEEEEECCC-------------
T ss_pred CCeEEEEeCCCCe----eeeccCCCccEEEEEECCCCCEEEEEe-cCCeEEEEECCCCcEEEEeeccccCccceeecc-c
Confidence 5677777765552 444444456688899997666565554 567888888865543332221110000000000 0
Q ss_pred cccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecC
Q psy13635 172 TIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLN 251 (357)
Q Consensus 172 ~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~d 251 (357)
.........+++.+ ++. +++....+.|...++..................++++|....|+.+... +.|...++.
T Consensus 203 ~~~~~~~~~~~~~~-~~~-~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~i~d~~ 277 (425)
T 1r5m_A 203 SGDGSLGVDVEWVD-DDK-FVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDD---GTLRIWHGG 277 (425)
T ss_dssp ---CCCBSCCEEEE-TTE-EEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETT---SCEEEECSS
T ss_pred cCCcceeeEEEEcC-CCE-EEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCC---CEEEEEECC
Confidence 00001155666664 344 4455556789998887654444443344567899999876666666544 578888876
Q ss_pred CCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEE-CCEEEEEeCCCCeEE
Q psy13635 252 GGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLL-GDYVYWTDWQRRSID 330 (357)
Q Consensus 252 g~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~-~~~ly~td~~~~~I~ 330 (357)
.......+...-.....+++.+. + ++++-...+.|...+................+..+++. .+.++++-...+.|.
T Consensus 278 ~~~~~~~~~~~~~~i~~~~~~~~-~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 355 (425)
T 1r5m_A 278 NGNSQNCFYGHSQSIVSASWVGD-D-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVN 355 (425)
T ss_dssp SBSCSEEECCCSSCEEEEEEETT-T-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCccceEecCCCccEEEEEECCC-C-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEE
Confidence 55444444334456688999854 4 55555567899999986554443443344566778876 344555555667888
Q ss_pred EEeCccCc
Q psy13635 331 RVNKITGN 338 (357)
Q Consensus 331 ~~~~~~g~ 338 (357)
..+..+++
T Consensus 356 i~~~~~~~ 363 (425)
T 1r5m_A 356 VYDLKKLN 363 (425)
T ss_dssp EEECHHHH
T ss_pred EEECCCCc
Confidence 88876665
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.85 E-value=5.7e-05 Score=70.38 Aligned_cols=279 Identities=9% Similarity=0.041 Sum_probs=172.3
Q ss_pred CeEEEEEeCCcEEEEEcCCCCcceEecc-CCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCc
Q psy13635 41 AQMLLFATSKDIRIANLSRPLKPVTIIK-DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITP 119 (357)
Q Consensus 41 ~~~l~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p 119 (357)
..++..+....|+..++..+........ ......++++.+.+..|+.+. .++.|...++.... ....+...-...
T Consensus 104 ~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~---~~~~~~~~~~~v 179 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGL-GNGLVDIYDVESQT---KLRTMAGHQARV 179 (401)
T ss_dssp TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCC---EEEEECCCSSCE
T ss_pred CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEEC-CCCeEEEEECcCCe---EEEEecCCCCce
Confidence 3456666677899999977443333332 355688999998666665554 46788888887653 233333334456
Q ss_pred eeEEEEcCCCeEEEEeCCCCEEEEEEcCCCce-EEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCC
Q psy13635 120 DGLAIDWLTEKLYWTDSETNKLEVSSLDGKKR-KVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTD 198 (357)
Q Consensus 120 ~glavd~~~~~ly~td~~~~~I~~~~~~g~~~-~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~ 198 (357)
..++++ . .++++....+.|...++..... ...... .-....++++.+.+ .++++....+
T Consensus 180 ~~~~~~--~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------------~~~~v~~~~~~~~~-~~l~s~~~d~ 239 (401)
T 4aez_A 180 GCLSWN--R-HVLSSGSRSGAIHHHDVRIANHQIGTLQG----------------HSSEVCGLAWRSDG-LQLASGGNDN 239 (401)
T ss_dssp EEEEEE--T-TEEEEEETTSEEEEEETTSSSCEEEEEEC----------------CSSCEEEEEECTTS-SEEEEEETTS
T ss_pred EEEEEC--C-CEEEEEcCCCCEEEEecccCcceeeEEcC----------------CCCCeeEEEEcCCC-CEEEEEeCCC
Confidence 666665 3 4556666778999999873322 222211 11256778888744 4555555567
Q ss_pred eEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEE
Q psy13635 199 RIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKL 278 (357)
Q Consensus 199 ~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~l 278 (357)
.|...++..................++++|.+..++.+..+...+.|...++........+.. -.....+++.+.+..|
T Consensus 240 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~s~~~~~l 318 (401)
T 4aez_A 240 VVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA-GSQVTSLIWSPHSKEI 318 (401)
T ss_dssp CEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC-SSCEEEEEECSSSSEE
T ss_pred eEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC-CCcEEEEEECCCCCeE
Confidence 899999886554444444455678999999777788776532236899999876655444432 3467899998777667
Q ss_pred EEEe-CCCCeEEEEeCCCCCeEEE--ecCCCCceEEEEEE-CCEEEEEeCCCCeEEEEeCccCceeEEEe
Q psy13635 279 YWCD-AKTDKIEMIDFDGNNRREL--INENLPHVFGISLL-GDYVYWTDWQRRSIDRVNKITGNDREVII 344 (357)
Q Consensus 279 Y~~d-~~~~~I~~~~~dG~~~~~i--~~~~~~~p~gia~~-~~~ly~td~~~~~I~~~~~~~g~~~~~i~ 344 (357)
+.+. ...+.|...+......... +.........+++. ++...++-...+.|...+..+++......
T Consensus 319 ~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 319 MSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp EEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred EEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 6654 3567888888765433222 22344456778886 35555566667888888877777655443
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=98.84 E-value=7.8e-06 Score=82.54 Aligned_cols=293 Identities=10% Similarity=0.062 Sum_probs=174.1
Q ss_pred EeecCCCCeEEEEEeC--C-----cEEEEEcCCCCcceEeccCC------------------------CcEEEEEEEccC
Q psy13635 34 ALSHHVAAQMLLFATS--K-----DIRIANLSRPLKPVTIIKDL------------------------EEGAAIDYYYKK 82 (357)
Q Consensus 34 ~~~~~~~~~~l~~~~~--~-----~i~~~~~~~~~~~~~~~~~~------------------------~~~~~i~~d~~~ 82 (357)
+++-++...+|+++.. . .|+.+|+.++....+..... .....+++++++
T Consensus 41 ~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg 120 (741)
T 2ecf_A 41 KPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDA 120 (741)
T ss_dssp EEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTS
T ss_pred CceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCC
Confidence 3444556667777764 3 68999998744333332211 124678999988
Q ss_pred CEEEEEeCCCCeEEEEEcCCC---CcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCC
Q psy13635 83 SMVCWTDHGTEMISCCTFDGN---NVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDI 159 (357)
Q Consensus 83 ~~ly~~d~~~~~I~~~~~~g~---~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~ 159 (357)
..|+++.. +.|+..++++. . ...+...-..+..+++.+.++.|+++.. +.|...++++.....+...+.
T Consensus 121 ~~l~~~~~--~~i~~~d~~~~~~~~----~~~l~~~~~~~~~~~~SPDG~~la~~~~--~~i~~~d~~~g~~~~~~~~~~ 192 (741)
T 2ecf_A 121 QRLLFPLG--GELYLYDLKQEGKAA----VRQLTHGEGFATDAKLSPKGGFVSFIRG--RNLWVIDLASGRQMQLTADGS 192 (741)
T ss_dssp SEEEEEET--TEEEEEESSSCSTTS----CCBCCCSSSCEEEEEECTTSSEEEEEET--TEEEEEETTTTEEEECCCCCC
T ss_pred CEEEEEeC--CcEEEEECCCCCcce----EEEcccCCcccccccCCCCCCEEEEEeC--CcEEEEecCCCCEEEeccCCc
Confidence 88988876 78999999876 4 2223333355788999998888888763 589999988765544322110
Q ss_pred CCcceeee---eccCcccccCCceEEEeCCCCeEEEEeCCC--------------------------------CeEEEEE
Q psy13635 160 DQPRAIAS---YKLPTIEVEHPDGVAVDWVARNLYWTDTGT--------------------------------DRIEVCR 204 (357)
Q Consensus 160 ~~p~~i~~---~~~~~~~~~~p~glavD~~~~~lY~td~~~--------------------------------~~I~~~~ 204 (357)
. .+.. -.+..+.+..+.++++.+.+..|+++.... ..|...+
T Consensus 193 ~---~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d 269 (741)
T 2ecf_A 193 T---TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS 269 (741)
T ss_dssp S---SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred c---ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence 0 0000 000001122357888988888888874322 1677777
Q ss_pred cCC-CceEEEecC--CCCCceEEEEeCCCCEEEEEeC--CCCCCeEEEEecCCCceEEEeeCCCC----CceEEEEecCC
Q psy13635 205 LEG-THRKVLVNT--DLVEPRAITLSPAHGYLFWSDW--NEKRPKIERSLLNGGERVLLVKDRLG----WPNGITLDVDN 275 (357)
Q Consensus 205 ~~g-~~~~~~~~~--~~~~P~giavd~~~g~Ly~~d~--~~~~~~I~~~~~dg~~~~~~~~~~l~----~P~giaid~~~ 275 (357)
.++ .....+... ....+..+++ |.+..|+++.. ......|+..+.++.....+...... ....+++.+++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg 348 (741)
T 2ecf_A 270 PAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDG 348 (741)
T ss_dssp SSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTS
T ss_pred CCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCC
Confidence 776 554444321 2234678889 88788887754 21135788899887666555432211 23467887655
Q ss_pred CEEEEEeCCC--CeEEEEeCCCCCeEEEecCCCCceEEE-EEE--CCEEEEEeCCC----CeEEEEeCccCceeEE
Q psy13635 276 EKLYWCDAKT--DKIEMIDFDGNNRRELINENLPHVFGI-SLL--GDYVYWTDWQR----RSIDRVNKITGNDREV 342 (357)
Q Consensus 276 ~~lY~~d~~~--~~I~~~~~dG~~~~~i~~~~~~~p~gi-a~~--~~~ly~td~~~----~~I~~~~~~~g~~~~~ 342 (357)
. ++++.... ..|+.++.+|. ...+. ..-.....+ ++. ++.||++.... ..|+.++. +|+..+.
T Consensus 349 ~-~~~~~~~~g~~~l~~~~~~~~-~~~l~-~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~-~g~~~~~ 420 (741)
T 2ecf_A 349 S-ILWSSERTGFQHLYRIDSKGK-AAALT-HGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL-QGGQPQR 420 (741)
T ss_dssp C-EEEEECTTSSCEEEEECSSSC-EEESC-CSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET-TCCCCEE
T ss_pred e-EEEEecCCCccEEEEEcCCCC-eeeee-ecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc-CCCCeee
Confidence 4 65554443 47888888777 44333 222233444 354 46788776543 34777775 3543333
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.82 E-value=9.5e-07 Score=80.61 Aligned_cols=188 Identities=18% Similarity=0.184 Sum_probs=120.0
Q ss_pred EEEEEe--CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCC-------EEEEEeCC--CCeEEEEEcCCCCcceeEEE
Q psy13635 43 MLLFAT--SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKS-------MVCWTDHG--TEMISCCTFDGNNVGSKHNV 111 (357)
Q Consensus 43 ~l~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~-------~ly~~d~~--~~~I~~~~~~g~~~~~~~~~ 111 (357)
.+++++ ...+..+|++| ..... ++. ..+.++++-+.-. .+|.++.. .++|..+.++... .....
T Consensus 41 s~ii~t~k~~gL~Vydl~G-~~l~~-~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~--~~l~~ 115 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSLDG-KMLHS-YNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN--GTLQS 115 (355)
T ss_dssp CEEEEEETTTEEEEEETTS-CEEEE-ECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT--CCEEE
T ss_pred cEEEEEcCCCCEEEEcCCC-cEEEE-ccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC--Cceee
Confidence 344544 34689999977 33333 333 6788888876221 46889988 8888777775332 11222
Q ss_pred E-------eCCcCCceeEEE--EcCCCe--EEEEeCCCCEEEEEEc----CCCceEEEEecCCCCcceeeeeccCccccc
Q psy13635 112 I-------TNGLITPDGLAI--DWLTEK--LYWTDSETNKLEVSSL----DGKKRKVLYWEDIDQPRAIASYKLPTIEVE 176 (357)
Q Consensus 112 ~-------~~~~~~p~glav--d~~~~~--ly~td~~~~~I~~~~~----~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~ 176 (357)
+ ..++..|.|+++ ++.++. +|+++.. +++..+.+ +|.....++.. +. -..
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~-G~~~q~~l~~~~~g~~~~~lVR~-------f~-------lgs 180 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKE-GEFEQYELKADKNGYISGKKVRA-------FK-------MNS 180 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSS-SEEEEEEEEECTTSCEEEEEEEE-------EE-------CSS
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCC-CeEEEEEEEeCCCCcccceEEEE-------ec-------CCC
Confidence 2 245588999999 876674 7777765 77777554 23222222211 00 013
Q ss_pred CCceEEEeCCCCeEEEEeCCCCeEEEEEcC--CCc-eEEEe---cCCCC-CceEEEEeCCC---CEEEEEeCCCCCCeEE
Q psy13635 177 HPDGVAVDWVARNLYWTDTGTDRIEVCRLE--GTH-RKVLV---NTDLV-EPRAITLSPAH---GYLFWSDWNEKRPKIE 246 (357)
Q Consensus 177 ~p~glavD~~~~~lY~td~~~~~I~~~~~~--g~~-~~~~~---~~~~~-~P~giavd~~~---g~Ly~~d~~~~~~~I~ 246 (357)
.|.|+++|+..+.||++++..+ |++++.+ +.. .+.+. ...+. .|.||++.+.. |+|+.++.+. ....
T Consensus 181 q~EgcvvDd~~g~Lyv~eEd~G-Iw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~--~s~~ 257 (355)
T 3amr_A 181 QTEGMAADDEYGRLYIAEEDEA-IWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGN--SSYA 257 (355)
T ss_dssp CEEEEEEETTTTEEEEEETTTE-EEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG--TEEE
T ss_pred CcceEEEcCCCCeEEEecccce-EEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCC--CEEE
Confidence 7999999999999999999854 9999955 321 22221 12343 79999997543 6899999885 4777
Q ss_pred EEecCCC
Q psy13635 247 RSLLNGG 253 (357)
Q Consensus 247 ~~~~dg~ 253 (357)
.++..+.
T Consensus 258 Vydr~~~ 264 (355)
T 3amr_A 258 IYDRQGK 264 (355)
T ss_dssp EEESSTT
T ss_pred EEECCCC
Confidence 7777543
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=98.82 E-value=3.1e-05 Score=75.77 Aligned_cols=286 Identities=9% Similarity=0.001 Sum_probs=173.0
Q ss_pred EeecCCCCeEEEEEeCCcEEEEEcCCC----CcceEeccCCCc-EEEEEEEc--cCCEEEEEeCCCCeEEEEEcCCC---
Q psy13635 34 ALSHHVAAQMLLFATSKDIRIANLSRP----LKPVTIIKDLEE-GAAIDYYY--KKSMVCWTDHGTEMISCCTFDGN--- 103 (357)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~i~~~~~~~~----~~~~~~~~~~~~-~~~i~~d~--~~~~ly~~d~~~~~I~~~~~~g~--- 103 (357)
+++-++...+++++..+.|...++... ............ +.++++++ .+..|..+. .++.|...++...
T Consensus 23 ~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~-~dg~v~vw~~~~~~~~ 101 (615)
T 1pgu_A 23 HLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGD-ESGKVIVWGWTFDKES 101 (615)
T ss_dssp CCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEE-TTSEEEEEEEEEEGGG
T ss_pred EEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEec-CCCEEEEEeCCCCccc
Confidence 344555667788888888999999864 344444455556 89999998 666665544 4677777777422
Q ss_pred ---CcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCC---CEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccC
Q psy13635 104 ---NVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSET---NKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEH 177 (357)
Q Consensus 104 ---~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~---~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~ 177 (357)
. ......+...-.....+++.+.++.|+.+.... +.|...+ .+.....+ ...-..
T Consensus 102 ~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d-~~~~~~~~-----------------~~~~~~ 162 (615)
T 1pgu_A 102 NSVE-VNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD-SGNSLGEV-----------------SGHSQR 162 (615)
T ss_dssp TEEE-EEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT-TCCEEEEC-----------------CSCSSC
T ss_pred cccc-ccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE-CCCcceee-----------------ecCCcc
Confidence 1 011223333445678899998777777766442 4565555 22211111 111124
Q ss_pred CceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCC---CceEEEEeCC-CCEEEEEeCCCCCCeEEEEecCCC
Q psy13635 178 PDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLV---EPRAITLSPA-HGYLFWSDWNEKRPKIERSLLNGG 253 (357)
Q Consensus 178 p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~---~P~giavd~~-~g~Ly~~d~~~~~~~I~~~~~dg~ 253 (357)
...+++.+.+..++++....+.|...+............... ....++++|. ...|+.+... +.|...++...
T Consensus 163 v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~ 239 (615)
T 1pgu_A 163 INACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD---RKISCFDGKSG 239 (615)
T ss_dssp EEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT---CCEEEEETTTC
T ss_pred EEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCC---CeEEEEECCCC
Confidence 667888877665666766678888888776544444433334 5789999987 5556655544 58888887655
Q ss_pred ceEEEe-e---CCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCC-eEEEecCC---CCceEEEEEE-CCEEEEEeC
Q psy13635 254 ERVLLV-K---DRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNN-RRELINEN---LPHVFGISLL-GDYVYWTDW 324 (357)
Q Consensus 254 ~~~~~~-~---~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~-~~~i~~~~---~~~p~gia~~-~~~ly~td~ 324 (357)
.....+ . ..-....++++. .+..| ++-...+.|...+..... ...+.... -..+..+.+. ++.+....
T Consensus 240 ~~~~~~~~~~~~~~~~v~~~~~~-~~~~l-~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 316 (615)
T 1pgu_A 240 EFLKYIEDDQEPVQGGIFALSWL-DSQKF-ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS- 316 (615)
T ss_dssp CEEEECCBTTBCCCSCEEEEEES-SSSEE-EEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEE-
T ss_pred CEeEEecccccccCCceEEEEEc-CCCEE-EEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEE-
Confidence 544444 3 333456788887 44444 444456789999886433 33332211 1234555553 45555544
Q ss_pred CCCeEEEEeCccCceeEEEec
Q psy13635 325 QRRSIDRVNKITGNDREVIIE 345 (357)
Q Consensus 325 ~~~~I~~~~~~~g~~~~~i~~ 345 (357)
..+.|...+..+++....+..
T Consensus 317 ~~g~i~~~d~~~~~~~~~~~~ 337 (615)
T 1pgu_A 317 LDGTLNFYELGHDEVLKTISG 337 (615)
T ss_dssp TTSCEEEEETTEEEEEEEECC
T ss_pred CCCCEEEEECCCCcEEEEEeC
Confidence 567888888766665555543
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.1e-06 Score=81.19 Aligned_cols=282 Identities=10% Similarity=0.019 Sum_probs=154.8
Q ss_pred ecCCCCeEEEEEeCC----cEEEEEcCCCCcceEeccCCCcEE-EEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEE
Q psy13635 36 SHHVAAQMLLFATSK----DIRIANLSRPLKPVTIIKDLEEGA-AIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHN 110 (357)
Q Consensus 36 ~~~~~~~~l~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~-~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~ 110 (357)
+-++....|++.... .|+.+|++++ ....+........ ++.+++++..|+++... +.|+.+++++.. ...
T Consensus 42 ~~SpdG~~l~~~~~~~g~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~-~~l~~~d~~~~~---~~~ 116 (396)
T 3c5m_A 42 CFTQDGKKLLFAGDFDGNRNYYLLNLETQ-QAVQLTEGKGDNTFGGFISTDERAFFYVKNE-LNLMKVDLETLE---EQV 116 (396)
T ss_dssp CBCTTSCEEEEEECTTSSCEEEEEETTTT-EEEECCCSSCBCTTTCEECTTSSEEEEEETT-TEEEEEETTTCC---EEE
T ss_pred cCCCCCCEEEEEEecCCCceEEEEECCCC-cEEEeecCCCCccccceECCCCCEEEEEEcC-CcEEEEECCCCC---cEE
Confidence 445556677777543 6888998773 3333333222222 25678888889777654 379999998764 122
Q ss_pred EEe-CCcCCcee--E----------------EEEcCCCeEEEEe----CCCCEEEEEEcCCCceEEEEecCCCCcceeee
Q psy13635 111 VIT-NGLITPDG--L----------------AIDWLTEKLYWTD----SETNKLEVSSLDGKKRKVLYWEDIDQPRAIAS 167 (357)
Q Consensus 111 ~~~-~~~~~p~g--l----------------avd~~~~~ly~td----~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~ 167 (357)
+.. ..-..|.| | ++.+.++.+++.. .....|.++++++.....+....
T Consensus 117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~--------- 187 (396)
T 3c5m_A 117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDT--------- 187 (396)
T ss_dssp EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEES---------
T ss_pred EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCC---------
Confidence 222 11111221 1 1122233333332 34457888887765554443211
Q ss_pred eccCcccccCCceEEEeC-CCCeEEEEeCCC-----CeEEEEEcCCCceEEEecCC-CCCceEEEEeCCCCEEEEEeCCC
Q psy13635 168 YKLPTIEVEHPDGVAVDW-VARNLYWTDTGT-----DRIEVCRLEGTHRKVLVNTD-LVEPRAITLSPAHGYLFWSDWNE 240 (357)
Q Consensus 168 ~~~~~~~~~~p~glavD~-~~~~lY~td~~~-----~~I~~~~~~g~~~~~~~~~~-~~~P~giavd~~~g~Ly~~d~~~ 240 (357)
.....+++.+ .+++|+++.... .+|..++.++...+.+.... ...+..++++|.+.+|+++....
T Consensus 188 --------~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~ 259 (396)
T 3c5m_A 188 --------AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFK 259 (396)
T ss_dssp --------SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred --------cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCC
Confidence 1345567776 455566654332 47999999877655554321 22466789999877677764321
Q ss_pred CCCe--EEEEecCCCceEEEeeCCCCCceEEEEec-CCCEEEEEe---------------CCCCeEEEEeCCCCCeEEEe
Q psy13635 241 KRPK--IERSLLNGGERVLLVKDRLGWPNGITLDV-DNEKLYWCD---------------AKTDKIEMIDFDGNNRRELI 302 (357)
Q Consensus 241 ~~~~--I~~~~~dg~~~~~~~~~~l~~P~giaid~-~~~~lY~~d---------------~~~~~I~~~~~dG~~~~~i~ 302 (357)
.... |+..++++.....+.... ... +++.+ ++..++.+. .+...|+.+++++...+.+.
T Consensus 260 ~~~~~~l~~~d~~~g~~~~l~~~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~ 336 (396)
T 3c5m_A 260 GQTDRVIYKANPETLENEEVMVMP--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLC 336 (396)
T ss_dssp TTCCEEEEEECTTTCCEEEEEECC--SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEE
T ss_pred CCccceEEEEECCCCCeEEeeeCC--CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEcc
Confidence 1234 999999876655554322 112 66765 444444332 13468999998776555454
Q ss_pred cCCCC----------ceEEEEE--ECCEEEEEeCCC--CeEEEEeCccCceeEEE
Q psy13635 303 NENLP----------HVFGISL--LGDYVYWTDWQR--RSIDRVNKITGNDREVI 343 (357)
Q Consensus 303 ~~~~~----------~p~gia~--~~~~ly~td~~~--~~I~~~~~~~g~~~~~i 343 (357)
..... ....+++ ++..|+++.... ..|+.++.. +...+++
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~-~~~~~~~ 390 (396)
T 3c5m_A 337 KHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVP-ESYKHLE 390 (396)
T ss_dssp ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC-TTCC---
T ss_pred CCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEc-ccccccc
Confidence 32210 1222344 456788876543 468888874 4444443
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=6.2e-06 Score=76.37 Aligned_cols=208 Identities=12% Similarity=0.073 Sum_probs=140.2
Q ss_pred CCCcEEEEEEEccCCEEEEEeCCC---------------CeEEEEEcCCC--CcceeEE-EEeCCc----CCceeEEEE-
Q psy13635 69 DLEEGAAIDYYYKKSMVCWTDHGT---------------EMISCCTFDGN--NVGSKHN-VITNGL----ITPDGLAID- 125 (357)
Q Consensus 69 ~~~~~~~i~~d~~~~~ly~~d~~~---------------~~I~~~~~~g~--~~~~~~~-~~~~~~----~~p~glavd- 125 (357)
.+..+.++.+|. .++||+.|.+. -+|..+++... ... .. .+.... ..-..++||
T Consensus 85 ~lvsV~~v~iD~-~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li--~~y~~p~~~~~~~S~l~di~VD~ 161 (381)
T 3q6k_A 85 ELTSIYQPVIDD-CRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEV--VRYYFPTRLVEKPTYFGGFAVDV 161 (381)
T ss_dssp SSSCEEEEEECT-TCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEE--EEEECCGGGCCCGGGEEEEEEEE
T ss_pred ceEEeeEEEEcC-CCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeE--EEEECCHHhcccCCccceEEEec
Confidence 477889999996 78999999762 15778888776 421 22 222221 335678999
Q ss_pred c------CCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcc--eeeeeccCccc---ccCCceEEEeCC----CCeE
Q psy13635 126 W------LTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPR--AIASYKLPTIE---VEHPDGVAVDWV----ARNL 190 (357)
Q Consensus 126 ~------~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~--~i~~~~~~~~~---~~~p~glavD~~----~~~l 190 (357)
- ..+.+|++|.....|.++++.......+.... ..|. +... +.... ..+..|||+++. ++.|
T Consensus 162 ~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~-~~pd~~~~~~--i~G~~~~~~~Gi~gIaLsp~~~~~~~~L 238 (381)
T 3q6k_A 162 ANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT-FKAERPTKFD--YGGKEYEFKAGIFGITLGDRDSEGNRPA 238 (381)
T ss_dssp SCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG-GSCCSCEEEE--ETTEEEEECCCEEEEEECCCCTTSCCEE
T ss_pred ccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC-CccccCcceE--ECCEEeEeccCceEEEecCCcCCCCeEE
Confidence 2 15789999999999999999766554444322 2222 1100 00111 136789999987 7899
Q ss_pred EEEeCCCCeEEEEEc---C-C---CceEEEecCC-CCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCC-----CceEE
Q psy13635 191 YWTDTGTDRIEVCRL---E-G---THRKVLVNTD-LVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNG-----GERVL 257 (357)
Q Consensus 191 Y~td~~~~~I~~~~~---~-g---~~~~~~~~~~-~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg-----~~~~~ 257 (357)
||.-....+++++.. . . ...+.+...+ .....++++|+.+|.||+++... ..|.+.+.++ .+...
T Consensus 239 Yf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~--~aI~~w~~~~~~~~~~n~~~ 316 (381)
T 3q6k_A 239 YYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANT--KQVSCWNTQKMPLRMKNTDV 316 (381)
T ss_dssp EEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSS--SEEEEEETTSCSBCGGGEEE
T ss_pred EEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccC--CeEEEEeCCCCccccCceEE
Confidence 999998888988872 1 1 2223333222 23445788987789999999985 4999999987 34445
Q ss_pred Eee-CCCCCceEEEEecCCCEEEEEeCCC
Q psy13635 258 LVK-DRLGWPNGITLDVDNEKLYWCDAKT 285 (357)
Q Consensus 258 ~~~-~~l~~P~giaid~~~~~lY~~d~~~ 285 (357)
+.. ..+.+|.++++| .++.||+.....
T Consensus 317 l~~d~~l~~pd~~~i~-~~g~Lwv~sn~l 344 (381)
T 3q6k_A 317 VYTSSRFVFGTDISVD-SKGGLWFMSNGF 344 (381)
T ss_dssp EEECTTCCSEEEEEEC-TTSCEEEEECSC
T ss_pred EEECCCccccCeEEEC-CCCeEEEEECcc
Confidence 443 468899999998 688999987543
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.80 E-value=1.7e-06 Score=78.90 Aligned_cols=195 Identities=15% Similarity=0.168 Sum_probs=120.3
Q ss_pred CEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCC-------eEEEEeCC--CCEEEEEEcCCCceEE
Q psy13635 83 SMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTE-------KLYWTDSE--TNKLEVSSLDGKKRKV 153 (357)
Q Consensus 83 ~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~-------~ly~td~~--~~~I~~~~~~g~~~~~ 153 (357)
..+.-++. .+.+..++++|.. ...+.. ..+.++.+-+.-. .+|.++.. .++|..+.+|....+.
T Consensus 41 s~ii~t~k-~~gL~Vydl~G~~----l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l 113 (355)
T 3amr_A 41 SKLITTNK-KSGLVVYSLDGKM----LHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL 113 (355)
T ss_dssp CEEEEEET-TTEEEEEETTSCE----EEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCE
T ss_pred cEEEEEcC-CCCEEEEcCCCcE----EEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCce
Confidence 44333444 3567777777763 222221 4566666543111 46899988 8999999876433221
Q ss_pred EEecCCCCcceeeeeccCcccccCCceEEE--eCCCCe--EEEEeCCCCeEEEEEc----CCCceEEEec--CCCCCceE
Q psy13635 154 LYWEDIDQPRAIASYKLPTIEVEHPDGVAV--DWVARN--LYWTDTGTDRIEVCRL----EGTHRKVLVN--TDLVEPRA 223 (357)
Q Consensus 154 ~~~~~~~~p~~i~~~~~~~~~~~~p~glav--D~~~~~--lY~td~~~~~I~~~~~----~g~~~~~~~~--~~~~~P~g 223 (357)
-.......|- ...+..|.|+++ ++.++. +|+++.. +++.+..+ +|.....++. ..-..|.|
T Consensus 114 ~~i~~~~~pv--------~t~~~~pyGlcly~~~~~g~~yafV~~k~-G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~Eg 184 (355)
T 3amr_A 114 QSMTDPDHPI--------ATAINEVYGFTLYHSQKTGKYYAMVTGKE-GEFEQYELKADKNGYISGKKVRAFKMNSQTEG 184 (355)
T ss_dssp EECSCTTSCE--------ECCCSSCCCEEEEECTTTCCEEEEEECSS-SEEEEEEEEECTTSCEEEEEEEEEECSSCEEE
T ss_pred eeccccccCc--------CCCCCCeeEEEEEecCCCCcEEEEEECCC-CeEEEEEEEeCCCCcccceEEEEecCCCCcce
Confidence 1111100010 133468999999 887774 6777665 67776544 2322212211 12358999
Q ss_pred EEEeCCCCEEEEEeCCCCCCeEEEEecC--CCc-eEEEee---CCCC-CceEEEEecCC---CEEEEEeCCCCeEEEEeC
Q psy13635 224 ITLSPAHGYLFWSDWNEKRPKIERSLLN--GGE-RVLLVK---DRLG-WPNGITLDVDN---EKLYWCDAKTDKIEMIDF 293 (357)
Q Consensus 224 iavd~~~g~Ly~~d~~~~~~~I~~~~~d--g~~-~~~~~~---~~l~-~P~giaid~~~---~~lY~~d~~~~~I~~~~~ 293 (357)
+++|+..|+||++++. ..|++++.+ +.. .+.+.. ..+. .|.||++.+.. ++|++++.+++....++.
T Consensus 185 cvvDd~~g~Lyv~eEd---~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr 261 (355)
T 3amr_A 185 MAADDEYGRLYIAEED---EAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDR 261 (355)
T ss_dssp EEEETTTTEEEEEETT---TEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred EEEcCCCCeEEEeccc---ceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEEC
Confidence 9999999999999998 369999965 322 233321 2333 79999996433 589999999999999998
Q ss_pred CCC
Q psy13635 294 DGN 296 (357)
Q Consensus 294 dG~ 296 (357)
.+.
T Consensus 262 ~~~ 264 (355)
T 3amr_A 262 QGK 264 (355)
T ss_dssp STT
T ss_pred CCC
Confidence 754
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=98.79 E-value=6.5e-05 Score=76.35 Aligned_cols=258 Identities=9% Similarity=0.013 Sum_probs=165.6
Q ss_pred EEeecCCCCeEEEEEeC-CcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEE
Q psy13635 33 YALSHHVAAQMLLFATS-KDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV 111 (357)
Q Consensus 33 ~~~~~~~~~~~l~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~ 111 (357)
.|++-++..++++.+.. ..|...|+..+..............++++++.+..|..+.. ++.|...+++... ....
T Consensus 17 ~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vw~~~~~~---~~~~ 92 (814)
T 3mkq_A 17 KGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD-DFRIRVFNYNTGE---KVVD 92 (814)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEET-TSEEEEEETTTCC---EEEE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeC-CCeEEEEECCCCc---EEEE
Confidence 34455667777877774 46888998764444444455667899999998777776654 6788888887664 2334
Q ss_pred EeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCC-ceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeE
Q psy13635 112 ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGK-KRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNL 190 (357)
Q Consensus 112 ~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~-~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~l 190 (357)
+......+..+++.+.+..|+. -...+.|...+++.. ......... -.....+++.+.++.+
T Consensus 93 ~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~vw~~~~~~~~~~~~~~~----------------~~~v~~~~~~p~~~~~ 155 (814)
T 3mkq_A 93 FEAHPDYIRSIAVHPTKPYVLS-GSDDLTVKLWNWENNWALEQTFEGH----------------EHFVMCVAFNPKDPST 155 (814)
T ss_dssp EECCSSCEEEEEECSSSSEEEE-EETTSEEEEEEGGGTSEEEEEEECC----------------SSCEEEEEEETTEEEE
T ss_pred EecCCCCEEEEEEeCCCCEEEE-EcCCCEEEEEECCCCceEEEEEcCC----------------CCcEEEEEEEcCCCCE
Confidence 4444566888999986666654 445788999998765 222222111 1245678888756666
Q ss_pred EEEeCCCCeEEEEEcCCCce-EEEecCCCCCceEEEEeC--CCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCce
Q psy13635 191 YWTDTGTDRIEVCRLEGTHR-KVLVNTDLVEPRAITLSP--AHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPN 267 (357)
Q Consensus 191 Y~td~~~~~I~~~~~~g~~~-~~~~~~~~~~P~giavd~--~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~ 267 (357)
+++....+.|...++.+... ..+..........+++.| ....|+.+... +.|...+.........+........
T Consensus 156 l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~v~ 232 (814)
T 3mkq_A 156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD---LTIKIWDYQTKSCVATLEGHMSNVS 232 (814)
T ss_dssp EEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTT---SEEEEEETTTTEEEEEEECCSSCEE
T ss_pred EEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCC---CEEEEEECCCCcEEEEEcCCCCCEE
Confidence 66766678899999865443 333332335678889987 54455555443 5888888876655555544555678
Q ss_pred EEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEE
Q psy13635 268 GITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLL 315 (357)
Q Consensus 268 giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~ 315 (357)
.+++.+.+..|+ +-...+.|...+................+..+++.
T Consensus 233 ~~~~~~~~~~l~-~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~ 279 (814)
T 3mkq_A 233 FAVFHPTLPIII-SGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATH 279 (814)
T ss_dssp EEEECSSSSEEE-EEETTSCEEEEETTTCSEEEEECCSSSSEEEEEEC
T ss_pred EEEEcCCCCEEE-EEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEc
Confidence 899986555444 44456788888887544433443344455666655
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.7e-06 Score=76.07 Aligned_cols=228 Identities=12% Similarity=0.109 Sum_probs=147.2
Q ss_pred EEEeecCCCCeEEEEEeCCcEEEEEcCC-CCcceEeccC--CCcEEEEEEEccCCEEEEEeCC---CCeEEEEEcCCCCc
Q psy13635 32 WYALSHHVAAQMLLFATSKDIRIANLSR-PLKPVTIIKD--LEEGAAIDYYYKKSMVCWTDHG---TEMISCCTFDGNNV 105 (357)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~~~i~~~~~~~-~~~~~~~~~~--~~~~~~i~~d~~~~~ly~~d~~---~~~I~~~~~~g~~~ 105 (357)
..++.-++...+++++....|+.+|+.+ ... ..+... ...+..+++++.+..|+++... ...|+.++.++..
T Consensus 44 v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~- 121 (297)
T 2ojh_A 44 FEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSP-EKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT- 121 (297)
T ss_dssp CEEEEECTTSSEEEEEETTEEEEEESSSCCSC-EECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-
T ss_pred eEeeEECCCCCEEEEEcCCeEEEEeCCCCCCc-eEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-
Confidence 3455666677788888888899999977 433 333322 2456678999988889888743 4689999887764
Q ss_pred ceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCC--EEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEE
Q psy13635 106 GSKHNVITNGLITPDGLAIDWLTEKLYWTDSETN--KLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAV 183 (357)
Q Consensus 106 ~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~--~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glav 183 (357)
...+... ..+..+++.+.++.|+++....+ +|..++.++.....+.. ....+..+++
T Consensus 122 ---~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------------~~~~~~~~~~ 180 (297)
T 2ojh_A 122 ---PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTH-----------------GEGRNDGPDY 180 (297)
T ss_dssp ---CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCC-----------------SSSCEEEEEE
T ss_pred ---eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEccc-----------------CCCccccceE
Confidence 3333222 23677889888888887665555 55555566554433211 1124677888
Q ss_pred eCCCCeEEEEeC--CCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCC--------CCeEEEEecCCC
Q psy13635 184 DWVARNLYWTDT--GTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEK--------RPKIERSLLNGG 253 (357)
Q Consensus 184 D~~~~~lY~td~--~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~--------~~~I~~~~~dg~ 253 (357)
++.+..|+++.. +..+|+.++.++.....+.. .......++++|....|+++..... ...|+..++++.
T Consensus 181 s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 259 (297)
T 2ojh_A 181 SPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD-SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG 259 (297)
T ss_dssp CTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC-CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred CCCCCEEEEEecCCCCccEEEECCCCCCcEEEec-CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence 887878887754 33477777777766554432 2245667899998778877765311 146899998877
Q ss_pred ceEEEee--CCCCCceEEEEecCCCEEEEEeC
Q psy13635 254 ERVLLVK--DRLGWPNGITLDVDNEKLYWCDA 283 (357)
Q Consensus 254 ~~~~~~~--~~l~~P~giaid~~~~~lY~~d~ 283 (357)
....+.. ..-..+..+++.+.+..|+++..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 291 (297)
T 2ojh_A 260 NVETLFDLFGGQGTMNSPNWSPDGDEFAYVRY 291 (297)
T ss_dssp SCEEEEEEEESTTTSCSCCBCTTSSEEEEEEE
T ss_pred CceeeeccCCCCcccccceECCCCCEEEEEEe
Confidence 6654442 22234556777777777776654
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-05 Score=74.04 Aligned_cols=244 Identities=10% Similarity=-0.057 Sum_probs=142.0
Q ss_pred EEEEccCCEEEEEeCCCC--eEEEEEcCCCCcceeEEEEeCCcCCc-eeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceE
Q psy13635 76 IDYYYKKSMVCWTDHGTE--MISCCTFDGNNVGSKHNVITNGLITP-DGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRK 152 (357)
Q Consensus 76 i~~d~~~~~ly~~d~~~~--~I~~~~~~g~~~~~~~~~~~~~~~~p-~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~ 152 (357)
.++.|++.+|+++...++ .|+.+++++.. ...+..+-..+ .++++.+.++.|+++.. ...|++.++++...+
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~----~~~lt~~~~~~~~~~~~spdg~~l~~~~~-~~~l~~~d~~~g~~~ 115 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQV----ATQLTEGRGDNTFGGFLSPDDDALFYVKD-GRNLMRVDLATLEEN 115 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCE----EEECCCSSCBCSSSCEECTTSSEEEEEET-TTEEEEEETTTCCEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCc----eEEeeeCCCCCccceEEcCCCCEEEEEeC-CCeEEEEECCCCcce
Confidence 568888888877765333 69999998874 33333333222 36789988889999885 368999999877665
Q ss_pred EEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEe---------------------CCCCeEEEEEcCCCceE
Q psy13635 153 VLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTD---------------------TGTDRIEVCRLEGTHRK 211 (357)
Q Consensus 153 ~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td---------------------~~~~~I~~~~~~g~~~~ 211 (357)
.+..... + .......++++.+..+.... .....|++.++.+...+
T Consensus 116 ~~~~~~~----~----------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 181 (388)
T 3pe7_A 116 VVYQVPA----E----------WVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST 181 (388)
T ss_dssp EEEECCT----T----------EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE
T ss_pred eeeechh----h----------cccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE
Confidence 5542210 0 00001112343333333211 12247888888866655
Q ss_pred EEecCCCCCceEEEEeC-CCCEEEEEeCCCC---CCeEEEEecCCCceEEEeeCCC-CCceEEEEecCCCEEEE-EeCCC
Q psy13635 212 VLVNTDLVEPRAITLSP-AHGYLFWSDWNEK---RPKIERSLLNGGERVLLVKDRL-GWPNGITLDVDNEKLYW-CDAKT 285 (357)
Q Consensus 212 ~~~~~~~~~P~giavd~-~~g~Ly~~d~~~~---~~~I~~~~~dg~~~~~~~~~~l-~~P~giaid~~~~~lY~-~d~~~ 285 (357)
.+... ......++++| .+.+|.++..... ..+|+..+.+|.....+....- ......++.+++.+|++ ++...
T Consensus 182 ~l~~~-~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 260 (388)
T 3pe7_A 182 VILQE-NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKG 260 (388)
T ss_dssp EEEEE-SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETT
T ss_pred EeecC-CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCC
Confidence 55432 34567899999 7667766665421 2589999999887766653321 12346788877777754 44322
Q ss_pred C---eEEEEeCCCCCeEEEecCCC-----CceE--EEEEECCEEEEEe--------CCCCeEEEEeCccCce
Q psy13635 286 D---KIEMIDFDGNNRRELINENL-----PHVF--GISLLGDYVYWTD--------WQRRSIDRVNKITGND 339 (357)
Q Consensus 286 ~---~I~~~~~dG~~~~~i~~~~~-----~~p~--gia~~~~~ly~td--------~~~~~I~~~~~~~g~~ 339 (357)
. .|+.+++++...+.+..... ..+. .++.++..|+++. .....|+.++..+|+.
T Consensus 261 ~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (388)
T 3pe7_A 261 SPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ 332 (388)
T ss_dssp CCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE
T ss_pred CCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence 2 39999998766554432111 0021 2444555666542 3455788888754443
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=98.75 E-value=0.00013 Score=67.25 Aligned_cols=283 Identities=13% Similarity=0.055 Sum_probs=164.3
Q ss_pred eEEEEEe-CCcEEEEEcCCCC------cceEeccCCCcEEEEEEEcc---CC---EEEEEeCCCCeEEEEEcCCCCccee
Q psy13635 42 QMLLFAT-SKDIRIANLSRPL------KPVTIIKDLEEGAAIDYYYK---KS---MVCWTDHGTEMISCCTFDGNNVGSK 108 (357)
Q Consensus 42 ~~l~~~~-~~~i~~~~~~~~~------~~~~~~~~~~~~~~i~~d~~---~~---~ly~~d~~~~~I~~~~~~g~~~~~~ 108 (357)
.+++.+. ...|+..++.... ..............+++.+. ++ .++++-..++.|+..++++......
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 106 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKK 106 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCC
T ss_pred CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccc
Confidence 4455444 4578889987744 23344445566789999986 24 5555555567788877776531000
Q ss_pred --EEEEeCC-----cCCceeEEEE----cCCCeEEEEeCCCCEEEEEEcCC-------CceE-----EEEecCCCCccee
Q psy13635 109 --HNVITNG-----LITPDGLAID----WLTEKLYWTDSETNKLEVSSLDG-------KKRK-----VLYWEDIDQPRAI 165 (357)
Q Consensus 109 --~~~~~~~-----~~~p~glavd----~~~~~ly~td~~~~~I~~~~~~g-------~~~~-----~~~~~~~~~p~~i 165 (357)
...+... -..+..+++. +.++.++++-...+.|...++.. .... .+... ..
T Consensus 107 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~----- 180 (397)
T 1sq9_A 107 VIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT-VE----- 180 (397)
T ss_dssp EEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEE-EC-----
T ss_pred ccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeee-ec-----
Confidence 2222222 2567889998 76666144444567888877654 2222 22100 00
Q ss_pred eeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecC---C---CCCceEEEEeCCCCEEEEEeCC
Q psy13635 166 ASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNT---D---LVEPRAITLSPAHGYLFWSDWN 239 (357)
Q Consensus 166 ~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~---~---~~~P~giavd~~~g~Ly~~d~~ 239 (357)
.+...-..+..+++.+.+ ++++....+.|...++........... . ......++++|....|+.+...
T Consensus 181 ----~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d 254 (397)
T 1sq9_A 181 ----SPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 254 (397)
T ss_dssp ----CSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEE
T ss_pred ----cccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecC
Confidence 000112357888998755 666666678899999875544333333 2 4568899999876666655442
Q ss_pred CCCCeEEEEecCCCceEEEeeC-------------CCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEec---
Q psy13635 240 EKRPKIERSLLNGGERVLLVKD-------------RLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELIN--- 303 (357)
Q Consensus 240 ~~~~~I~~~~~dg~~~~~~~~~-------------~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~--- 303 (357)
...+.|...++........+.. .-.....+++.+.+..|+. -...+.|...+.........+.
T Consensus 255 ~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~ 333 (397)
T 1sq9_A 255 NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS-AGWDGKLRFWDVKTKERITTLNMHC 333 (397)
T ss_dssp TTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE-EETTSEEEEEETTTTEEEEEEECCG
T ss_pred CCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEE-EeCCCeEEEEEcCCCceeEEEeccc
Confidence 1003788888765544433333 3345688999865555554 4467789999986544333333
Q ss_pred ---CC---------------CCceEEEEEECC-----------EEEEEeCCCCeEEEEeCccC
Q psy13635 304 ---EN---------------LPHVFGISLLGD-----------YVYWTDWQRRSIDRVNKITG 337 (357)
Q Consensus 304 ---~~---------------~~~p~gia~~~~-----------~ly~td~~~~~I~~~~~~~g 337 (357)
.. .....++++..+ .++++-...+.|...+..+|
T Consensus 334 ~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 334 DDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp GGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred CcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 22 345678888753 56666666788877776554
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.73 E-value=4.3e-06 Score=77.74 Aligned_cols=276 Identities=6% Similarity=0.031 Sum_probs=169.6
Q ss_pred CCcEEEEEcCCCCc--ceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcc-eeEEEEeCCcCCceeEEEE
Q psy13635 49 SKDIRIANLSRPLK--PVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVG-SKHNVITNGLITPDGLAID 125 (357)
Q Consensus 49 ~~~i~~~~~~~~~~--~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-~~~~~~~~~~~~p~glavd 125 (357)
...|+..++..... .............+++++.+..|..+ ..++.|...+++..... .....+...-.....+++.
T Consensus 44 d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 122 (416)
T 2pm9_A 44 DSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGA-LDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFN 122 (416)
T ss_dssp CCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEE-ESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEEC
T ss_pred CCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEE-ccCCeEEEeecccccccccchhhccCCccceEEEEEc
Confidence 34688899876431 22223445678899999866666544 44567888887762110 1233333344567889999
Q ss_pred cCCCeEEEEeCCCCEEEEEEcCCCc------eEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCe
Q psy13635 126 WLTEKLYWTDSETNKLEVSSLDGKK------RKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDR 199 (357)
Q Consensus 126 ~~~~~ly~td~~~~~I~~~~~~g~~------~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~ 199 (357)
+.++.++++-...+.|...++.... ........ ........++++.+.++.++++....+.
T Consensus 123 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 189 (416)
T 2pm9_A 123 AKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQS-------------MSSVDEVISLAWNQSLAHVFASAGSSNF 189 (416)
T ss_dssp SSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCS-------------CCSSCCCCEEEECSSCTTEEEEESSSSC
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCccccccccccccccc-------------cCCCCCeeEEEeCCCCCcEEEEEcCCCC
Confidence 8656677777778889988886553 11110000 1112356789998876777778777788
Q ss_pred EEEEEcCCCceEEEecCC------CCCceEEEEeCCCCEEEEE-eCCCCCCeEEEEecCCC-ceEEEee-CCCCCceEEE
Q psy13635 200 IEVCRLEGTHRKVLVNTD------LVEPRAITLSPAHGYLFWS-DWNEKRPKIERSLLNGG-ERVLLVK-DRLGWPNGIT 270 (357)
Q Consensus 200 I~~~~~~g~~~~~~~~~~------~~~P~giavd~~~g~Ly~~-d~~~~~~~I~~~~~dg~-~~~~~~~-~~l~~P~gia 270 (357)
|...++............ ......++++|.++.++++ ......+.|...++... .....+. ..-.....++
T Consensus 190 v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~ 269 (416)
T 2pm9_A 190 ASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLD 269 (416)
T ss_dssp EEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEE
T ss_pred EEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEE
Confidence 999998865544433322 4568899999875444444 43311126777777653 2222222 2334568899
Q ss_pred EecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEEC-C-EEEEEeCCCCeEEEEeCccCc
Q psy13635 271 LDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLG-D-YVYWTDWQRRSIDRVNKITGN 338 (357)
Q Consensus 271 id~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~~-~-~ly~td~~~~~I~~~~~~~g~ 338 (357)
+.+.++.++++-...+.|...+.........+.........+++.. + .++++-...+.|...+..+++
T Consensus 270 ~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 270 WCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp ECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred eCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence 9864566666666678899999865444333333344556777764 3 677777777888877765444
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=98.72 E-value=3.1e-06 Score=83.18 Aligned_cols=260 Identities=11% Similarity=-0.014 Sum_probs=156.0
Q ss_pred CCCeEEEEEe--CCcEEEEEcCCCCcceEeccCC-CcEEEEEEEccCCEEEEEeC--CCC--eEEEEEc--CCCCcceeE
Q psy13635 39 VAAQMLLFAT--SKDIRIANLSRPLKPVTIIKDL-EEGAAIDYYYKKSMVCWTDH--GTE--MISCCTF--DGNNVGSKH 109 (357)
Q Consensus 39 ~~~~~l~~~~--~~~i~~~~~~~~~~~~~~~~~~-~~~~~i~~d~~~~~ly~~d~--~~~--~I~~~~~--~g~~~~~~~ 109 (357)
++...|.+++ ...+...++++ .....+.... ....+++++++ ..+|+++. ..+ .|+.++. +|.. .
T Consensus 31 ~DG~~la~~s~~~g~~~lw~~~~-g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~----~ 104 (582)
T 3o4h_A 31 VDGDKLLVVGFSEGSVNAYLYDG-GETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEE----Q 104 (582)
T ss_dssp ETTTEEEEEEEETTEEEEEEEET-TEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCC----E
T ss_pred CCCCeEEEEEccCCceeEEEEcC-CCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCcc----c
Confidence 3444566654 33444455555 3333333333 45677888876 67788876 222 6888888 7764 3
Q ss_pred EEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCe
Q psy13635 110 NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARN 189 (357)
Q Consensus 110 ~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~ 189 (357)
.+ .........++.+.++.++++....+.+...++++...+.+.... ...++++|.++.
T Consensus 105 -~l-~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-------------------~~~~~~spDG~~ 163 (582)
T 3o4h_A 105 -RL-EAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-------------------GFGFVSDIRGDL 163 (582)
T ss_dssp -EC-TTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-------------------SCEEEEEEETTE
T ss_pred -cc-cCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-------------------CceEEECCCCCE
Confidence 22 222234455777667666665544445557787776655554221 167788888888
Q ss_pred EEEEeCC--C-CeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCc
Q psy13635 190 LYWTDTG--T-DRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWP 266 (357)
Q Consensus 190 lY~td~~--~-~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P 266 (357)
|+++... . ..|++.++++...+.+.. .......++++|++..|+.++.... ..|+..++++.... ++...-..+
T Consensus 164 la~~~~~~~~~~~i~~~d~~~g~~~~l~~-~~~~~~~~~~SpDG~~l~~~~~~~~-~~i~~~d~~~~~~~-~~~~~~~~~ 240 (582)
T 3o4h_A 164 IAGLGFFGGGRVSLFTSNLSSGGLRVFDS-GEGSFSSASISPGMKVTAGLETARE-ARLVTVDPRDGSVE-DLELPSKDF 240 (582)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCCEEECC-SSCEEEEEEECTTSCEEEEEECSSC-EEEEEECTTTCCEE-ECCCSCSHH
T ss_pred EEEEEEcCCCCeEEEEEcCCCCCceEeec-CCCccccceECCCCCEEEEccCCCe-eEEEEEcCCCCcEE-EccCCCcCh
Confidence 8865432 1 469999988766666543 3345688999998778885555432 48999999987776 443322333
Q ss_pred eEEE--------EecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEECCEEEEEeCCC---CeEEEEeC
Q psy13635 267 NGIT--------LDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQR---RSIDRVNK 334 (357)
Q Consensus 267 ~gia--------id~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~~~~ly~td~~~---~~I~~~~~ 334 (357)
.+++ +++++ ++|++-...+.+..... |.... .......++++.++.++++-... ..++.++.
T Consensus 241 ~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~-g~~~~----~~~~~v~~~~~sdg~~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 241 SSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID-GERVE----APQGNHGRVVLWRGKLVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp HHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET-TEEEC----CCSSEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred hhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE-CCeec----cCCCceEEEEecCCEEEEEEcCCCCCCeEEEEcC
Confidence 4444 87655 88887766777777777 53221 11234456666666665543222 45677765
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.70 E-value=0.00016 Score=65.35 Aligned_cols=263 Identities=11% Similarity=0.047 Sum_probs=161.8
Q ss_pred CCCcEEEEEEEcc---CCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEE
Q psy13635 69 DLEEGAAIDYYYK---KSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSS 145 (357)
Q Consensus 69 ~~~~~~~i~~d~~---~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~ 145 (357)
......++++.+. ++.+..+-..++.|+..+.+.... .....+.........+++.+ .+.+..+....+.|...+
T Consensus 31 H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~-~~~~l~s~s~D~~i~lWd 108 (321)
T 3ow8_A 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-DLQWSLEGHQLGVVSVDISH-TLPIAASSSLDAHIRLWD 108 (321)
T ss_dssp SSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECS-SSSEEEEEETTSEEEEEE
T ss_pred CCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-eeeeeeccCCCCEEEEEECC-CCCEEEEEeCCCcEEEEE
Confidence 3456788888653 345667767777777777665421 01112333334567788886 455666777788999999
Q ss_pred cCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEE
Q psy13635 146 LDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAIT 225 (357)
Q Consensus 146 ~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~gia 225 (357)
+........+... -.....+++.+.+.. .++....+.|...+...................++
T Consensus 109 ~~~~~~~~~~~~~----------------~~~~~~~~~spdg~~-l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~ 171 (321)
T 3ow8_A 109 LENGKQIKSIDAG----------------PVDAWTLAFSPDSQY-LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIA 171 (321)
T ss_dssp TTTTEEEEEEECC----------------TTCCCCEEECTTSSE-EEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEE
T ss_pred CCCCCEEEEEeCC----------------CccEEEEEECCCCCE-EEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEE
Confidence 8655433322211 123556788865554 44556667888888876554444444445678999
Q ss_pred EeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCC
Q psy13635 226 LSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINEN 305 (357)
Q Consensus 226 vd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~ 305 (357)
++|....|..+... +.|...++........+.........+++++. +.++++-...+.|...+.........+...
T Consensus 172 ~spdg~~lasg~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h 247 (321)
T 3ow8_A 172 YSPDGKYLASGAID---GIINIFDIATGKLLHTLEGHAMPIRSLTFSPD-SQLLVTASDDGYIKIYDVQHANLAGTLSGH 247 (321)
T ss_dssp ECTTSSEEEEEETT---SCEEEEETTTTEEEEEECCCSSCCCEEEECTT-SCEEEEECTTSCEEEEETTTCCEEEEECCC
T ss_pred ECCCCCEEEEEcCC---CeEEEEECCCCcEEEEEcccCCceeEEEEcCC-CCEEEEEcCCCeEEEEECCCcceeEEEcCC
Confidence 99976666665544 57888888765544444333345689999864 455555566788999998765554444444
Q ss_pred CCceEEEEEE-CCEEEEEeCCCCeEEEEeCccCceeEEEecccCCceeee
Q psy13635 306 LPHVFGISLL-GDYVYWTDWQRRSIDRVNKITGNDREVIIERSCTGVTRR 354 (357)
Q Consensus 306 ~~~p~gia~~-~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~i~ 354 (357)
......+++. ++...++-...+.|...+..+++....+...-.....+.
T Consensus 248 ~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~ 297 (321)
T 3ow8_A 248 ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVK 297 (321)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEE
Confidence 5556778876 345555555667888888767776666654444444443
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=0.00016 Score=67.72 Aligned_cols=273 Identities=10% Similarity=0.060 Sum_probs=163.3
Q ss_pred eecCCCCeEEEEEe-CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEe
Q psy13635 35 LSHHVAAQMLLFAT-SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT 113 (357)
Q Consensus 35 ~~~~~~~~~l~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~ 113 (357)
+.-++..++++-+. ...|+..|+..+..............+++|++.+. +..+-..++.|...++.+.. ....+.
T Consensus 114 ~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~-~l~sgs~D~~i~iwd~~~~~---~~~~~~ 189 (410)
T 1vyh_C 114 VIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK-LLASCSADMTIKLWDFQGFE---CIRTMH 189 (410)
T ss_dssp EEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSS-EEEEEETTSCCCEEETTSSC---EEECCC
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCc---eeEEEc
Confidence 33344455555554 45799999877554444545566788999998555 55565666778888887653 223333
Q ss_pred CCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEE
Q psy13635 114 NGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWT 193 (357)
Q Consensus 114 ~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~t 193 (357)
..-.....+++.+.+ ..+++-...+.|...++........+... -.....+++.+ ++.++++
T Consensus 190 ~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~h----------------~~~v~~~~~~~-~g~~l~s 251 (410)
T 1vyh_C 190 GHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTGH----------------REWVRMVRPNQ-DGTLIAS 251 (410)
T ss_dssp CCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECC----------------SSCEEEEEECT-TSSEEEE
T ss_pred CCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEeCC----------------CccEEEEEECC-CCCEEEE
Confidence 334567889998754 45556667889999998655433222111 11345566664 4456666
Q ss_pred eCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCC-------------------CEEEEEeCCCCCCeEEEEecCCCc
Q psy13635 194 DTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAH-------------------GYLFWSDWNEKRPKIERSLLNGGE 254 (357)
Q Consensus 194 d~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~-------------------g~Ly~~d~~~~~~~I~~~~~dg~~ 254 (357)
....+.|...+...................++++|.. |.+.++-... +.|...++....
T Consensus 252 ~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D--~~i~iwd~~~~~ 329 (410)
T 1vyh_C 252 CSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD--KTIKMWDVSTGM 329 (410)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETT--SEEEEEETTTTE
T ss_pred EcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCC--CeEEEEECCCCc
Confidence 6667788888877654444343344556778887742 3344444442 578888877554
Q ss_pred eEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEEC-CEEEEEeCCCCeEEEE
Q psy13635 255 RVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLG-DYVYWTDWQRRSIDRV 332 (357)
Q Consensus 255 ~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~~-~~ly~td~~~~~I~~~ 332 (357)
....+...-....++++++.+..|+ +-...+.|...+.........+...-....++++.. +...++-...+.|...
T Consensus 330 ~~~~~~~h~~~v~~v~~~~~g~~l~-s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW 407 (410)
T 1vyh_C 330 CLMTLVGHDNWVRGVLFHSGGKFIL-SCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407 (410)
T ss_dssp EEEEEECCSSCEEEEEECSSSSCEE-EEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred eEEEEECCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence 4444444445678999986555554 555677888888755433233333444566777763 4444444455555443
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=2.4e-05 Score=78.57 Aligned_cols=255 Identities=10% Similarity=0.025 Sum_probs=154.7
Q ss_pred CcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCC--
Q psy13635 71 EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG-- 148 (357)
Q Consensus 71 ~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g-- 148 (357)
..+.+++++++ +.+.++. ++.|+..++.+.. ...+...-..+..+++.+.++.|+++. .+.|...++++
T Consensus 82 ~~v~~~~~spd-~~~~~~~--~~~i~~~d~~~~~----~~~l~~~~~~~~~~~~SpdG~~la~~~--~~~i~v~~~~~~~ 152 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT--QGGLVGFDMLARK----VTYLFDTNEETASLDFSPVGDRVAYVR--NHNLYIARGGKLG 152 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE--TTEEEEEETTTTE----EEEEECCTTCCTTCEECTTSSEEEEEE--TTEEEEEECBCTT
T ss_pred cCceeEEECCC-CeEEEEE--CCEEEEEECCCCc----eEEccCCcccccCCcCCCCCCEEEEEE--CCeEEEEecCccc
Confidence 45788999998 8777763 3789999998763 333333344577889999888888864 57899999876
Q ss_pred ---CceEEEEecCCCC-cceeeeeccCcccccCCceEEEeCCCCeEEEEeC-----------------------------
Q psy13635 149 ---KKRKVLYWEDIDQ-PRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDT----------------------------- 195 (357)
Q Consensus 149 ---~~~~~~~~~~~~~-p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~----------------------------- 195 (357)
.....+...+... ..++++ ..+.+..+.++++.+.+..|+++..
T Consensus 153 ~~~g~~~~~~~~~~~~~~~g~~~---~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g 229 (706)
T 2z3z_A 153 EGMSRAIAVTIDGTETLVYGQAV---HQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAG 229 (706)
T ss_dssp SCCCCCEESCSCCBTTEEESSCC---GGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTT
T ss_pred ccCCCcEEeccCCCCCeEcccch---hhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCC
Confidence 4433322111000 000000 0122334688999988888887751
Q ss_pred ---CCCeEEEEEcCCCceEEEecC--CCCCceEEEEeCCCCEEEEEeCCC--CCCeEEEEecCCC-ceEEEeeC-CC---
Q psy13635 196 ---GTDRIEVCRLEGTHRKVLVNT--DLVEPRAITLSPAHGYLFWSDWNE--KRPKIERSLLNGG-ERVLLVKD-RL--- 263 (357)
Q Consensus 196 ---~~~~I~~~~~~g~~~~~~~~~--~~~~P~giavd~~~g~Ly~~d~~~--~~~~I~~~~~dg~-~~~~~~~~-~l--- 263 (357)
....|.+.++++.....+... ....+..++++|.+..|+++.... ....|...+.++. ....+... .-
T Consensus 230 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~ 309 (706)
T 2z3z_A 230 TPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYV 309 (706)
T ss_dssp SCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCC
T ss_pred CCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeE
Confidence 224788888887655443321 123467899999877888865432 1237888888776 44444322 11
Q ss_pred CCceEEEEec--CCCEEEEEeC-CCCeEEEEeCCCCCeEEEecCCCCceEE-EEEE--CCEEEEEeCCCC----eEEEEe
Q psy13635 264 GWPNGITLDV--DNEKLYWCDA-KTDKIEMIDFDGNNRRELINENLPHVFG-ISLL--GDYVYWTDWQRR----SIDRVN 333 (357)
Q Consensus 264 ~~P~giaid~--~~~~lY~~d~-~~~~I~~~~~dG~~~~~i~~~~~~~p~g-ia~~--~~~ly~td~~~~----~I~~~~ 333 (357)
....++++.+ ++..||.++. +..+|+.++.+|...+.+.. ......+ +++. ++.||++....+ .|++++
T Consensus 310 ~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~-~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d 388 (706)
T 2z3z_A 310 EPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK-GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCID 388 (706)
T ss_dssp CCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCC-SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEE
T ss_pred CccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCC-CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEE
Confidence 1135678875 4444444433 34578888877765554432 2222333 4554 468888877654 788888
Q ss_pred CccCc
Q psy13635 334 KITGN 338 (357)
Q Consensus 334 ~~~g~ 338 (357)
..+++
T Consensus 389 ~~~~~ 393 (706)
T 2z3z_A 389 IKGGK 393 (706)
T ss_dssp TTCCC
T ss_pred cCCCC
Confidence 75554
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.64 E-value=0.00019 Score=66.35 Aligned_cols=236 Identities=6% Similarity=-0.072 Sum_probs=144.9
Q ss_pred EEeecCCCCeEEEEEeC-CcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEE
Q psy13635 33 YALSHHVAAQMLLFATS-KDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV 111 (357)
Q Consensus 33 ~~~~~~~~~~~l~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~ 111 (357)
.++.-++...+|+.+.. ..|+..+.++ ..............++++.+.+..|+.+. .++.|...++.... ....
T Consensus 112 ~~~~~s~~~~~l~~~~~dg~i~i~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~---~~~~ 186 (425)
T 1r5m_A 112 TCLAWSHDGNSIVTGVENGELRLWNKTG-ALLNVLNFHRAPIVSVKWNKDGTHIISMD-VENVTILWNVISGT---VMQH 186 (425)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCCSCEEEEEECTTSSEEEEEE-TTCCEEEEETTTTE---EEEE
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCC-CeeeeccCCCccEEEEEECCCCCEEEEEe-cCCeEEEEECCCCc---EEEE
Confidence 34444555566666654 4688888554 33444444566789999998777666554 45678888886553 1222
Q ss_pred EeCCcCC---------------ceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCccccc
Q psy13635 112 ITNGLIT---------------PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVE 176 (357)
Q Consensus 112 ~~~~~~~---------------p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~ 176 (357)
+...... +..+++.+ ++. +++-...+.|...++........... .-.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~g~i~~~d~~~~~~~~~~~~----------------~~~ 248 (425)
T 1r5m_A 187 FELKETGGSSINAENHSGDGSLGVDVEWVD-DDK-FVIPGPKGAIFVYQITEKTPTGKLIG----------------HHG 248 (425)
T ss_dssp ECCC---------------CCCBSCCEEEE-TTE-EEEECGGGCEEEEETTCSSCSEEECC----------------CSS
T ss_pred eeccccCccceeeccccCCcceeeEEEEcC-CCE-EEEEcCCCeEEEEEcCCCceeeeecc----------------CCC
Confidence 2222222 66777775 344 55556678899888876533222211 112
Q ss_pred CCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceE
Q psy13635 177 HPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERV 256 (357)
Q Consensus 177 ~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~ 256 (357)
....+++.+.+..|+ +....+.|...+...................++++|. +.++.+... +.|...++......
T Consensus 249 ~i~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~d---~~i~i~d~~~~~~~ 323 (425)
T 1r5m_A 249 PISVLEFNDTNKLLL-SASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGD-DKVISCSMD---GSVRLWSLKQNTLL 323 (425)
T ss_dssp CEEEEEEETTTTEEE-EEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETT-TEEEEEETT---SEEEEEETTTTEEE
T ss_pred ceEEEEECCCCCEEE-EEcCCCEEEEEECCCCccceEecCCCccEEEEEECCC-CEEEEEeCC---CcEEEEECCCCcEe
Confidence 456788887665555 4445578888887754433333334456789999986 444444433 58988998766555
Q ss_pred EEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCC
Q psy13635 257 LLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNN 297 (357)
Q Consensus 257 ~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~ 297 (357)
......-..+..+++.+.+..|+.+ ...+.|...+.....
T Consensus 324 ~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 324 ALSIVDGVPIFAGRISQDGQKYAVA-FMDGQVNVYDLKKLN 363 (425)
T ss_dssp EEEECTTCCEEEEEECTTSSEEEEE-ETTSCEEEEECHHHH
T ss_pred EecccCCccEEEEEEcCCCCEEEEE-ECCCeEEEEECCCCc
Confidence 5554445567899998655555544 456788888875433
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.62 E-value=8.6e-06 Score=75.72 Aligned_cols=247 Identities=11% Similarity=0.036 Sum_probs=153.6
Q ss_pred CCCCeEEEEEe-CCcEEEEEcCCC----CcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCC------cc
Q psy13635 38 HVAAQMLLFAT-SKDIRIANLSRP----LKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNN------VG 106 (357)
Q Consensus 38 ~~~~~~l~~~~-~~~i~~~~~~~~----~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~------~~ 106 (357)
++...+|+.+. ...|+..++... ...............+++++.++.++.+-..++.|+..++.... ..
T Consensus 76 s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 155 (416)
T 2pm9_A 76 SHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTP 155 (416)
T ss_dssp CSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCC
T ss_pred CCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccc
Confidence 44555566655 457888888761 22233334455678899998756666777777888888887653 10
Q ss_pred eeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCC
Q psy13635 107 SKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWV 186 (357)
Q Consensus 107 ~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~ 186 (357)
............+..+++.+.++.++++....+.|...++.............. . ...-..+..+++.+.
T Consensus 156 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~---------~~~~~~v~~~~~~~~ 225 (416)
T 2pm9_A 156 LTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSP-N---------SGIKQQLSVVEWHPK 225 (416)
T ss_dssp BCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCC-S---------SCCCCCEEEEEECSS
T ss_pred cccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecccc-c---------cccCCceEEEEECCC
Confidence 000011223345788999987677888877889999999876544333221100 0 000235678889887
Q ss_pred CCeEEEEeCCCC---eEEEEEcCCC-ceEEEec-CCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeC
Q psy13635 187 ARNLYWTDTGTD---RIEVCRLEGT-HRKVLVN-TDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKD 261 (357)
Q Consensus 187 ~~~lY~td~~~~---~I~~~~~~g~-~~~~~~~-~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~ 261 (357)
++.++++....+ .|...++... ....... .....+..++++|.++.++++-... +.|...++........+..
T Consensus 226 ~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d--g~v~~wd~~~~~~~~~~~~ 303 (416)
T 2pm9_A 226 NSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD--NTVLLWNPESAEQLSQFPA 303 (416)
T ss_dssp CTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESS--SEEEEECSSSCCEEEEEEC
T ss_pred CCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCC--CCEEEeeCCCCccceeecC
Confidence 766666665555 8888888753 2222222 2345678999998445444444432 5888888876555444444
Q ss_pred CCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCC
Q psy13635 262 RLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGN 296 (357)
Q Consensus 262 ~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~ 296 (357)
.-.....+++.+.+..++++-...+.|...++...
T Consensus 304 ~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 304 RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 44566789998655467777777788888887653
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.61 E-value=0.00025 Score=62.70 Aligned_cols=269 Identities=8% Similarity=0.029 Sum_probs=159.6
Q ss_pred EEEEEe-CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCcee
Q psy13635 43 MLLFAT-SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDG 121 (357)
Q Consensus 43 ~l~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~g 121 (357)
+++.+. ...|+..|+.+...............++++++.+..|+.+. .++.|...++...........+.........
T Consensus 31 ~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~ 109 (313)
T 3odt_A 31 KVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGG-KDTMINGVPLFATSGEDPLYTLIGHQGNVCS 109 (313)
T ss_dssp EEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEE-TTSCEEEEETTCCTTSCC-CEECCCSSCEEE
T ss_pred EEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEec-CCCeEEEEEeeecCCCCcccchhhcccCEEE
Confidence 344444 45688888866444444445566789999999766666554 4567777776544311112233333345566
Q ss_pred EEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEE
Q psy13635 122 LAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIE 201 (357)
Q Consensus 122 lavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~ 201 (357)
++++ ++ ++++-...+.|...+ .+.....+.. .-.....+++.+..+..+++....+.|.
T Consensus 110 ~~~~--~~-~l~~~~~d~~i~~~d-~~~~~~~~~~-----------------~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 168 (313)
T 3odt_A 110 LSFQ--DG-VVISGSWDKTAKVWK-EGSLVYNLQA-----------------HNASVWDAKVVSFSENKFLTASADKTIK 168 (313)
T ss_dssp EEEE--TT-EEEEEETTSEEEEEE-TTEEEEEEEC-----------------CSSCEEEEEEEETTTTEEEEEETTSCEE
T ss_pred EEec--CC-EEEEEeCCCCEEEEc-CCcEEEeccc-----------------CCCceeEEEEccCCCCEEEEEECCCCEE
Confidence 7774 44 445555678888888 3332222211 1123456666654455555555567788
Q ss_pred EEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEE
Q psy13635 202 VCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWC 281 (357)
Q Consensus 202 ~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~ 281 (357)
..+ .+.....+..........++++|. +.++.+... +.|...++........+........++++.+.+ +|+ +
T Consensus 169 i~d-~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~-~ 241 (313)
T 3odt_A 169 LWQ-NDKVIKTFSGIHNDVVRHLAVVDD-GHFISCSND---GLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIV-S 241 (313)
T ss_dssp EEE-TTEEEEEECSSCSSCEEEEEEEET-TEEEEEETT---SEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEE-E
T ss_pred EEe-cCceEEEEeccCcccEEEEEEcCC-CeEEEccCC---CeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEE-E
Confidence 877 333333333224456788999975 665544443 588888887655554444445567899998544 554 4
Q ss_pred eCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEEC-CEEEEEeCCCCeEEEEeCccCceeE
Q psy13635 282 DAKTDKIEMIDFDGNNRRELINENLPHVFGISLLG-DYVYWTDWQRRSIDRVNKITGNDRE 341 (357)
Q Consensus 282 d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~~-~~ly~td~~~~~I~~~~~~~g~~~~ 341 (357)
-...+.|...+.........+.........+++.. +.+ ++-...+.|...+..+++...
T Consensus 242 ~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 242 CGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDI-IVGSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp EETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCE-EEEETTSCEEEEESCGGGCCC
T ss_pred EecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCE-EEEeCCCcEEEEeCCCCceee
Confidence 44578899999865544444443444567788863 454 445566888888876665443
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.61 E-value=8.5e-05 Score=68.10 Aligned_cols=237 Identities=8% Similarity=-0.052 Sum_probs=148.4
Q ss_pred CCCCeEEEEEeCCcEEEEEcCCCCcceEe----ccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEe
Q psy13635 38 HVAAQMLLFATSKDIRIANLSRPLKPVTI----IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT 113 (357)
Q Consensus 38 ~~~~~~l~~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~ 113 (357)
+++..++.-+....|+..|+..+...... ...-....+++|++.+..| .+-..++.|+..++.... ....+.
T Consensus 91 s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l-~sgs~d~~i~iwd~~~~~---~~~~~~ 166 (344)
T 4gqb_B 91 VGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQA-VSGSKDICIKVWDLAQQV---VLSSYR 166 (344)
T ss_dssp ETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEE-EEEETTSCEEEEETTTTE---EEEEEC
T ss_pred eCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEE-EEEeCCCeEEEEECCCCc---EEEEEc
Confidence 33444444444667888898764433222 1344568899999865555 455566788888887653 233343
Q ss_pred CCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEE
Q psy13635 114 NGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWT 193 (357)
Q Consensus 114 ~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~t 193 (357)
..-.....+++.+.+..++.+-...+.|...++........+.. ......+..+++.+.+++++++
T Consensus 167 ~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--------------~~~~~~~~~~~~~p~~~~~l~s 232 (344)
T 4gqb_B 167 AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC--------------SAPGYLPTSLAWHPQQSEVFVF 232 (344)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC------------------CCCEEEEEECSSCTTEEEE
T ss_pred CcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeec--------------ceeeccceeeeecCCCCcceEE
Confidence 34456788999887778888888888999998865433221110 1111245678888888888888
Q ss_pred eCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEec
Q psy13635 194 DTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDV 273 (357)
Q Consensus 194 d~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~ 273 (357)
....+.|...+...................++++|.+..+..+-... +.|...+........+ ...-....++++.+
T Consensus 233 g~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D--~~i~vwd~~~~~~~~~-~~H~~~V~~v~~sp 309 (344)
T 4gqb_B 233 GDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSED--CSLAVLDSSLSELFRS-QAHRDFVRDATWSP 309 (344)
T ss_dssp EETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETT--SCEEEECTTCCEEEEE-CCCSSCEEEEEECS
T ss_pred eccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCC--CeEEEEECCCCcEEEE-cCCCCCEEEEEEeC
Confidence 77778899988874433322333445678999998755554444332 4777777765543332 22334568899987
Q ss_pred CCCEEEEEeCCCCeEEEEeCCC
Q psy13635 274 DNEKLYWCDAKTDKIEMIDFDG 295 (357)
Q Consensus 274 ~~~~lY~~d~~~~~I~~~~~dG 295 (357)
.+..|+.+-...+.|..-+++.
T Consensus 310 ~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 310 LNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp SSTTEEEEEETTSCEEEEECCC
T ss_pred CCCeEEEEEcCCCeEEEEECCC
Confidence 7777776665566776666543
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=98.60 E-value=0.00029 Score=62.97 Aligned_cols=257 Identities=9% Similarity=0.021 Sum_probs=158.9
Q ss_pred EeecCCCCeEEEEEe-CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEE
Q psy13635 34 ALSHHVAAQMLLFAT-SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI 112 (357)
Q Consensus 34 ~~~~~~~~~~l~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~ 112 (357)
+++-++..++|+-+. ...|+..|+.................++++.+.++.|..+ ..++.|+..++.... ....+
T Consensus 18 ~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-s~d~~i~vwd~~~~~---~~~~~ 93 (304)
T 2ynn_A 18 GIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVG-SDDFRIRVFNYNTGE---KVVDF 93 (304)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEE-ETTSEEEEEETTTCC---EEEEE
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEE-CCCCEEEEEECCCCc---EEEEE
Confidence 444456667776666 4568889987644444444445567889999876666544 456788888887653 23334
Q ss_pred eCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCce-EEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEE
Q psy13635 113 TNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKR-KVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLY 191 (357)
Q Consensus 113 ~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~-~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY 191 (357)
...-.....+++.+.+ .+..+-...+.|...++..... ..... + .-.....++++|.++.++
T Consensus 94 ~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~~~~~~-~---------------h~~~v~~v~~~p~~~~~l 156 (304)
T 2ynn_A 94 EAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFE-G---------------HEHFVMCVAFNPKDPSTF 156 (304)
T ss_dssp ECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEEEEEEC-C---------------CCSCEEEEEECTTCTTEE
T ss_pred eCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcchhhhhc-c---------------cCCcEEEEEECCCCCCEE
Confidence 4444567899999754 4556666788999998865432 22221 1 112456788887777777
Q ss_pred EEeCCCCeEEEEEcCCCce-EEEecCCCCCceEEEEeCC-CC-EEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceE
Q psy13635 192 WTDTGTDRIEVCRLEGTHR-KVLVNTDLVEPRAITLSPA-HG-YLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNG 268 (357)
Q Consensus 192 ~td~~~~~I~~~~~~g~~~-~~~~~~~~~~P~giavd~~-~g-~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~g 268 (357)
.+....+.|...++..... ..+..........+++.|. ++ .|.-+... +.|...++........+.........
T Consensus 157 ~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D---~~i~iWd~~~~~~~~~~~~h~~~v~~ 233 (304)
T 2ynn_A 157 ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD---LTIKIWDYQTKSCVATLEGHMSNVSF 233 (304)
T ss_dssp EEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETT---SEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred EEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCC---CeEEEEeCCCCccceeeCCCCCCEEE
Confidence 7777778898888764433 2332222234456666653 23 34433333 58888888766555445455556678
Q ss_pred EEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEE
Q psy13635 269 ITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLL 315 (357)
Q Consensus 269 iaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~ 315 (357)
+++.+... +.++-...+.|...+.........+.........+++.
T Consensus 234 ~~~~p~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~ 279 (304)
T 2ynn_A 234 AVFHPTLP-IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATH 279 (304)
T ss_dssp EEECSSSS-EEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEEC
T ss_pred EEECCCCC-EEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEEC
Confidence 88986544 55555567788888886555444444444556677765
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=0.00035 Score=63.12 Aligned_cols=259 Identities=10% Similarity=0.055 Sum_probs=157.5
Q ss_pred CCcEEEEEcCCCC-cceE-eccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEc
Q psy13635 49 SKDIRIANLSRPL-KPVT-IIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDW 126 (357)
Q Consensus 49 ~~~i~~~~~~~~~-~~~~-~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~ 126 (357)
+..|+..++.... .... +........++++.+... +..+...++.|+..++.... ....+.........+++.+
T Consensus 57 D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~-~l~s~s~D~~i~lWd~~~~~---~~~~~~~~~~~~~~~~~sp 132 (321)
T 3ow8_A 57 DDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLP-IAASSSLDAHIRLWDLENGK---QIKSIDAGPVDAWTLAFSP 132 (321)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTE---EEEEEECCTTCCCCEEECT
T ss_pred CCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCC-EEEEEeCCCcEEEEECCCCC---EEEEEeCCCccEEEEEECC
Confidence 4557777765421 1111 223445678889987544 55566667888888887653 2334444445677899997
Q ss_pred CCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcC
Q psy13635 127 LTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLE 206 (357)
Q Consensus 127 ~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~ 206 (357)
.+ +.+.+....+.|...++............ -.....+++.+.+..|. +....+.|...++.
T Consensus 133 dg-~~l~~g~~dg~v~i~~~~~~~~~~~~~~~----------------~~~v~~~~~spdg~~la-sg~~dg~i~iwd~~ 194 (321)
T 3ow8_A 133 DS-QYLATGTHVGKVNIFGVESGKKEYSLDTR----------------GKFILSIAYSPDGKYLA-SGAIDGIINIFDIA 194 (321)
T ss_dssp TS-SEEEEECTTSEEEEEETTTCSEEEEEECS----------------SSCEEEEEECTTSSEEE-EEETTSCEEEEETT
T ss_pred CC-CEEEEEcCCCcEEEEEcCCCceeEEecCC----------------CceEEEEEECCCCCEEE-EEcCCCeEEEEECC
Confidence 54 45556667789999988765544332211 12356788886555554 44556788888887
Q ss_pred CCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCC
Q psy13635 207 GTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTD 286 (357)
Q Consensus 207 g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~ 286 (357)
.................++++|....|..+... +.|...++........+.........+++.+.+..| ++-...+
T Consensus 195 ~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l-~s~s~D~ 270 (321)
T 3ow8_A 195 TGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDD---GYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHF-VSSSSDK 270 (321)
T ss_dssp TTEEEEEECCCSSCCCEEEECTTSCEEEEECTT---SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE-EEEETTS
T ss_pred CCcEEEEEcccCCceeEEEEcCCCCEEEEEcCC---CeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEE-EEEeCCC
Confidence 554433333333456899999875555444433 578888887665554444444567889998655554 4555567
Q ss_pred eEEEEeCCCCCeEEEecCCCCceEEEEEEC-CEEEEEeCCCCeEEEEe
Q psy13635 287 KIEMIDFDGNNRRELINENLPHVFGISLLG-DYVYWTDWQRRSIDRVN 333 (357)
Q Consensus 287 ~I~~~~~dG~~~~~i~~~~~~~p~gia~~~-~~ly~td~~~~~I~~~~ 333 (357)
.|...+.........+........++++.. +...++-...+.|...+
T Consensus 271 ~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 271 SVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred cEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 888888865444333333445567788763 44444444556665544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=98.59 E-value=0.00063 Score=69.04 Aligned_cols=260 Identities=8% Similarity=-0.041 Sum_probs=161.5
Q ss_pred CCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCC
Q psy13635 69 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG 148 (357)
Q Consensus 69 ~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g 148 (357)
.-....+++++|.+..|..+. .++.|...+..... ....+...-....++++++.++.|..+. ..+.|...+++.
T Consensus 12 h~~~v~~i~~sp~~~~la~~~-~~g~v~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vw~~~~ 86 (814)
T 3mkq_A 12 RSDRVKGIDFHPTEPWVLTTL-YSGRVEIWNYETQV---EVRSIQVTETPVRAGKFIARKNWIIVGS-DDFRIRVFNYNT 86 (814)
T ss_dssp ECSCEEEEEECSSSSEEEEEE-TTSEEEEEETTTTE---EEEEEECCSSCEEEEEEEGGGTEEEEEE-TTSEEEEEETTT
T ss_pred CCCceEEEEECCCCCEEEEEe-CCCEEEEEECCCCc---eEEEEecCCCcEEEEEEeCCCCEEEEEe-CCCeEEEEECCC
Confidence 344678899999777776665 45788888876653 2334444445678999998666666554 478999999865
Q ss_pred CceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCC-ceEEEecCCCCCceEEEEe
Q psy13635 149 KKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGT-HRKVLVNTDLVEPRAITLS 227 (357)
Q Consensus 149 ~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~-~~~~~~~~~~~~P~giavd 227 (357)
.......... -.....+++.+.+..|..+. ..+.|...+.+.. ...............++++
T Consensus 87 ~~~~~~~~~~----------------~~~v~~~~~s~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~ 149 (814)
T 3mkq_A 87 GEKVVDFEAH----------------PDYIRSIAVHPTKPYVLSGS-DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN 149 (814)
T ss_dssp CCEEEEEECC----------------SSCEEEEEECSSSSEEEEEE-TTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEE
T ss_pred CcEEEEEecC----------------CCCEEEEEEeCCCCEEEEEc-CCCEEEEEECCCCceEEEEEcCCCCcEEEEEEE
Confidence 5433322211 12456788887666666444 4578888888754 3333343344567899999
Q ss_pred CCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCC-CCCceEEEEecC-CCEEEEEeCCCCeEEEEeCCCCCeEEEecCC
Q psy13635 228 PAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDR-LGWPNGITLDVD-NEKLYWCDAKTDKIEMIDFDGNNRRELINEN 305 (357)
Q Consensus 228 ~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~-l~~P~giaid~~-~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~ 305 (357)
|.++.++++-... +.|...++............ ......+++.+. ++..+++-...+.|...+.........+...
T Consensus 150 p~~~~~l~~~~~d--g~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 227 (814)
T 3mkq_A 150 PKDPSTFASGCLD--RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227 (814)
T ss_dssp TTEEEEEEEEETT--SEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECC
T ss_pred cCCCCEEEEEeCC--CeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCC
Confidence 8556555554442 58888888655443333333 255678888751 4455555566788999987654443333334
Q ss_pred CCceEEEEEE-CCEEEEEeCCCCeEEEEeCccCceeEEEecccCCcee
Q psy13635 306 LPHVFGISLL-GDYVYWTDWQRRSIDRVNKITGNDREVIIERSCTGVT 352 (357)
Q Consensus 306 ~~~p~gia~~-~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~ 352 (357)
......+++. .+.++++-...+.|...+..+++....+......+..
T Consensus 228 ~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~ 275 (814)
T 3mkq_A 228 MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWC 275 (814)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEE
Confidence 4456677776 3445555555678888887677766665544443333
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=98.57 E-value=0.00032 Score=63.74 Aligned_cols=238 Identities=7% Similarity=-0.048 Sum_probs=140.0
Q ss_pred eecCCCCeEEEEE-eCCcEEEEEcCCCC--cceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEE
Q psy13635 35 LSHHVAAQMLLFA-TSKDIRIANLSRPL--KPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV 111 (357)
Q Consensus 35 ~~~~~~~~~l~~~-~~~~i~~~~~~~~~--~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~ 111 (357)
+.-++...+++.+ ....|+..|+.+.. .............++++++.+..|+.+. .++.|...++..... ....
T Consensus 14 ~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~--~~~~ 90 (372)
T 1k8k_C 14 HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCG-TDRNAYVWTLKGRTW--KPTL 90 (372)
T ss_dssp EEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEE-TTSCEEEEEEETTEE--EEEE
T ss_pred EEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEc-CCCeEEEEECCCCee--eeeE
Confidence 3344555667666 35678888887642 3333334556788999999766666554 557788888765531 1122
Q ss_pred -EeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeE
Q psy13635 112 -ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNL 190 (357)
Q Consensus 112 -~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~l 190 (357)
....-..+..+++.+.++.|+.+. ..+.|...+++............ ...-..+..+++.+.+..|
T Consensus 91 ~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~------------~~~~~~i~~~~~~~~~~~l 157 (372)
T 1k8k_C 91 VILRINRAARCVRWAPNEKKFAVGS-GSRVISICYFEQENDWWVCKHIK------------KPIRSTVLSLDWHPNSVLL 157 (372)
T ss_dssp ECCCCSSCEEEEEECTTSSEEEEEE-TTSSEEEEEEETTTTEEEEEEEC------------TTCCSCEEEEEECTTSSEE
T ss_pred EeecCCCceeEEEECCCCCEEEEEe-CCCEEEEEEecCCCcceeeeeee------------cccCCCeeEEEEcCCCCEE
Confidence 223345678899997665555544 56778777766544211110000 0011246778888755444
Q ss_pred EEEeCCCCeEEEEEcC-------------------CCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecC
Q psy13635 191 YWTDTGTDRIEVCRLE-------------------GTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLN 251 (357)
Q Consensus 191 Y~td~~~~~I~~~~~~-------------------g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~d 251 (357)
+ +....+.|...+.. +..... ..........++++|....|+.+... +.|...++.
T Consensus 158 ~-~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~i~d~~ 232 (372)
T 1k8k_C 158 A-AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE-SSSSCGWVHGVCFSANGSRVAWVSHD---STVCLADAD 232 (372)
T ss_dssp E-EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEE-CCCCSSCEEEEEECSSSSEEEEEETT---TEEEEEEGG
T ss_pred E-EEcCCCCEEEEEcccccccccccccccccccchhhheEe-cCCCCCeEEEEEECCCCCEEEEEeCC---CEEEEEECC
Confidence 4 54455778888743 222222 22234567899999876667666644 588888886
Q ss_pred CCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCC
Q psy13635 252 GGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDG 295 (357)
Q Consensus 252 g~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG 295 (357)
.......+.........+++++ ++.++.+- ..+.|...+.+.
T Consensus 233 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 233 KKMAVATLASETLPLLAVTFIT-ESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp GTTEEEEEECSSCCEEEEEEEE-TTEEEEEE-TTSSCEEEEEET
T ss_pred CCceeEEEccCCCCeEEEEEec-CCCEEEEE-eCCeEEEEEccC
Confidence 5555444444444568999985 45554444 556666665543
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=98.57 E-value=4.7e-05 Score=71.78 Aligned_cols=255 Identities=8% Similarity=0.062 Sum_probs=163.8
Q ss_pred ccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCC-------CcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCC
Q psy13635 67 IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGN-------NVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETN 139 (357)
Q Consensus 67 ~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~-------~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~ 139 (357)
......+..+++.+.++.++.+-..++.|+..++... ........+...-..+.++++++.+..++++....+
T Consensus 125 ~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 204 (430)
T 2xyi_A 125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDH 204 (430)
T ss_dssp EEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTS
T ss_pred EcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCC
Confidence 3455677889999876778888777888888888641 000113333344456789999986665777777789
Q ss_pred EEEEEEcCCCce--EEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCC---ceEEEe
Q psy13635 140 KLEVSSLDGKKR--KVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGT---HRKVLV 214 (357)
Q Consensus 140 ~I~~~~~~g~~~--~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~---~~~~~~ 214 (357)
.|...++..... ..+.... .+ ...-..+.++++.+.++.++++....+.|...++... ......
T Consensus 205 ~i~vwd~~~~~~~~~~~~~~~-----~~------~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~ 273 (430)
T 2xyi_A 205 TICLWDINATPKEHRVIDAKN-----IF------TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV 273 (430)
T ss_dssp CEEEEETTSCCBGGGEEECSE-----EE------CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE
T ss_pred eEEEEeCCCCCCCCceeccce-----ee------cCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe
Confidence 999999875211 1110000 00 1111246788898878888888888899999998754 222222
Q ss_pred cCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCC-ceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeC
Q psy13635 215 NTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGG-ERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDF 293 (357)
Q Consensus 215 ~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~-~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~ 293 (357)
...-..++.++++|....++++-... +.|...++... .....+...-.....+++.+.+..++++-...+.|...++
T Consensus 274 ~~~~~~v~~i~~~p~~~~~l~tg~~d--g~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~ 351 (430)
T 2xyi_A 274 DAHTAEVNCLSFNPYSEFILATGSAD--KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351 (430)
T ss_dssp ECCSSCEEEEEECSSCTTEEEEEETT--SEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEG
T ss_pred ecCCCCeEEEEeCCCCCCEEEEEeCC--CeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeC
Confidence 23445689999999766677666553 58888888752 2223333344567899998777778888777788888887
Q ss_pred CCC--------------CeEEEecCCCCceEEEEEEC-C-EEEEEeCCCCeEEEEeC
Q psy13635 294 DGN--------------NRRELINENLPHVFGISLLG-D-YVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 294 dG~--------------~~~~i~~~~~~~p~gia~~~-~-~ly~td~~~~~I~~~~~ 334 (357)
... ............+..+++.. + +++++....+.|...+.
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~ 408 (430)
T 2xyi_A 352 SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408 (430)
T ss_dssp GGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred CCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEc
Confidence 541 22222223344688888873 3 37777777787766654
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=98.56 E-value=2.5e-05 Score=77.78 Aligned_cols=238 Identities=11% Similarity=-0.007 Sum_probs=145.0
Q ss_pred CCCeE-EEEEeC--CcEEEEEcC--CCCcceEecc-----CCCcEEEEEEEccCCEEEEEeCC---------CCeEEEEE
Q psy13635 39 VAAQM-LLFATS--KDIRIANLS--RPLKPVTIIK-----DLEEGAAIDYYYKKSMVCWTDHG---------TEMISCCT 99 (357)
Q Consensus 39 ~~~~~-l~~~~~--~~i~~~~~~--~~~~~~~~~~-----~~~~~~~i~~d~~~~~ly~~d~~---------~~~I~~~~ 99 (357)
+.... |+++.. ..|+.++++ ++.....+.. ......++++++++..|+++... ...|+.++
T Consensus 88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~ 167 (662)
T 3azo_A 88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVP 167 (662)
T ss_dssp SSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEE
T ss_pred cCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEE
Confidence 44555 777764 468889887 3023333333 23467789999999999887543 14799999
Q ss_pred cCC------CCcceeEEEEe-CCcCCceeEEEEcCCCeEEEEeCCC-------CEEEEEEcCC-C---ceEEEEecCCCC
Q psy13635 100 FDG------NNVGSKHNVIT-NGLITPDGLAIDWLTEKLYWTDSET-------NKLEVSSLDG-K---KRKVLYWEDIDQ 161 (357)
Q Consensus 100 ~~g------~~~~~~~~~~~-~~~~~p~glavd~~~~~ly~td~~~-------~~I~~~~~~g-~---~~~~~~~~~~~~ 161 (357)
+++ .. ...+. .+.....++++.+.++.|+++.... ..|..+++++ . ..+.+....
T Consensus 168 ~~~~~~~~~~~----~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~--- 240 (662)
T 3azo_A 168 LDGSAAADRSA----VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP--- 240 (662)
T ss_dssp TTSTTTTCGGG----SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET---
T ss_pred CCCCccccCCc----eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC---
Confidence 988 43 33444 4444567788999888998876432 5899999884 3 333332210
Q ss_pred cceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCC--eEEEEEcCCCceEEEecCCCCC--------ceEEEEeCCCC
Q psy13635 162 PRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTD--RIEVCRLEGTHRKVLVNTDLVE--------PRAITLSPAHG 231 (357)
Q Consensus 162 p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~--~I~~~~~~g~~~~~~~~~~~~~--------P~giavd~~~g 231 (357)
-..+..+++.+.+. +|++....+ +|++.++++...+.+....... ...+++.+. +
T Consensus 241 -------------~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~-~ 305 (662)
T 3azo_A 241 -------------EEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLAN-G 305 (662)
T ss_dssp -------------TBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTT-S
T ss_pred -------------CceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCC-C
Confidence 12455677776555 666655444 8999988665554444321111 356788765 5
Q ss_pred EEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEE-EEecCCCEEEEEeCCC---CeEEEEeCCCCCeEEEe
Q psy13635 232 YLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGI-TLDVDNEKLYWCDAKT---DKIEMIDFDGNNRRELI 302 (357)
Q Consensus 232 ~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~gi-aid~~~~~lY~~d~~~---~~I~~~~~dG~~~~~i~ 302 (357)
+++++.... ..+|++++.++.....+. .......++ +.| ++.++++-... ..|+.++.++...+.+.
T Consensus 306 ~~~~~~~~~-~~~l~~~d~~~~~~~~l~-~~~~~~~~~~s~~--~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~ 376 (662)
T 3azo_A 306 LIAVVHGKG-AAVLGILDPESGELVDAA-GPWTEWAATLTVS--GTRAVGVAASPRTAYEVVELDTVTGRARTIG 376 (662)
T ss_dssp CEEEEEBSS-SCEEEEEETTTTEEEECC-SSCCEEEEEEEEE--TTEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred EEEEEEEcC-ccEEEEEECCCCcEEEec-CCCCeEEEEEecC--CCEEEEEEcCCCCCCEEEEEECCCCceEEee
Confidence 555554333 479999999877655442 222334455 554 55665543322 37888888776665554
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=0.00052 Score=63.69 Aligned_cols=274 Identities=9% Similarity=0.007 Sum_probs=161.1
Q ss_pred EeecCCCCeEEEEEeCCcEEEEEcCCCCcceEeccC------------------CCcEEEEEEEccCCEEEEEeCCCCeE
Q psy13635 34 ALSHHVAAQMLLFATSKDIRIANLSRPLKPVTIIKD------------------LEEGAAIDYYYKKSMVCWTDHGTEMI 95 (357)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~------------------~~~~~~i~~d~~~~~ly~~d~~~~~I 95 (357)
|+.-++...+|..+....++..++..+.....+... .....+++|++.+..|. +...++.|
T Consensus 69 ~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~-s~~~d~~i 147 (393)
T 1erj_A 69 CVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA-TGAEDRLI 147 (393)
T ss_dssp EEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE-EEETTSCE
T ss_pred EEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE-EEcCCCeE
Confidence 445555666777776777888887653322222111 11267899998655554 44556788
Q ss_pred EEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccc
Q psy13635 96 SCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEV 175 (357)
Q Consensus 96 ~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~ 175 (357)
+..++.... ....+.........+++.+.++.| ++-...+.|...++............
T Consensus 148 ~iwd~~~~~---~~~~~~~h~~~v~~~~~~p~~~~l-~s~s~d~~v~iwd~~~~~~~~~~~~~----------------- 206 (393)
T 1erj_A 148 RIWDIENRK---IVMILQGHEQDIYSLDYFPSGDKL-VSGSGDRTVRIWDLRTGQCSLTLSIE----------------- 206 (393)
T ss_dssp EEEETTTTE---EEEEECCCSSCEEEEEECTTSSEE-EEEETTSEEEEEETTTTEEEEEEECS-----------------
T ss_pred EEEECCCCc---EEEEEccCCCCEEEEEEcCCCCEE-EEecCCCcEEEEECCCCeeEEEEEcC-----------------
Confidence 888887653 233444444567889998755555 55556789999998765443332211
Q ss_pred cCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCce-EEEe------cCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEE
Q psy13635 176 EHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHR-KVLV------NTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERS 248 (357)
Q Consensus 176 ~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~-~~~~------~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~ 248 (357)
.....+++.+.+++++++....+.|...+...... ..+. .........++++|.+..|+.+... +.|...
T Consensus 207 ~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d---~~v~~w 283 (393)
T 1erj_A 207 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD---RSVKLW 283 (393)
T ss_dssp SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT---SEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCC---CEEEEE
Confidence 23566777776677777777777888888764433 2221 1123457889999876666555444 466666
Q ss_pred ecCCCce------------EEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEEC
Q psy13635 249 LLNGGER------------VLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLG 316 (357)
Q Consensus 249 ~~dg~~~------------~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~~ 316 (357)
++..... ...+...-.....+++.+.+..| ++-...+.|...+.........+.........+++..
T Consensus 284 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~ 362 (393)
T 1erj_A 284 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYI-LSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 362 (393)
T ss_dssp EC---------------CEEEEEECCSSCEEEEEECGGGCEE-EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS
T ss_pred ECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEE-EEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecC
Confidence 6543211 11122223345678887555544 4445567888888765444334433444556677653
Q ss_pred -------CEEEEEeCCCCeEEEEe
Q psy13635 317 -------DYVYWTDWQRRSIDRVN 333 (357)
Q Consensus 317 -------~~ly~td~~~~~I~~~~ 333 (357)
+.++++-...+.|..-+
T Consensus 363 ~~~~~p~~~~l~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 363 GSSLGPEYNVFATGSGDCKARIWK 386 (393)
T ss_dssp SCTTCTTCEEEEEEETTSEEEEEE
T ss_pred CcCcCCCCCEEEEECCCCcEEECc
Confidence 56777766667765444
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=98.55 E-value=6.1e-06 Score=81.08 Aligned_cols=233 Identities=9% Similarity=-0.007 Sum_probs=140.0
Q ss_pred cEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCc-CCceeEEEEcCCCeEEEEeC--C--CCEEEEEEc
Q psy13635 72 EGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGL-ITPDGLAIDWLTEKLYWTDS--E--TNKLEVSSL 146 (357)
Q Consensus 72 ~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~-~~p~glavd~~~~~ly~td~--~--~~~I~~~~~ 146 (357)
...++++++++.+|.++...++.+....++|+. ...+...- ....++++.+. +.+|+++. + ..+|+.+++
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~----~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE----TVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEEETTE----EEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred chheeecCCCCCeEEEEEccCCceeEEEEcCCC----cEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence 467889999888998776545554444456653 33333222 34566677655 67788875 2 237777888
Q ss_pred --CCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEE
Q psy13635 147 --DGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAI 224 (357)
Q Consensus 147 --~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~gi 224 (357)
+|.... +. . .......++.+.++.++++....+.+...++++...+.+..... ..+
T Consensus 98 ~~~g~~~~-l~-~-----------------~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~ 155 (582)
T 3o4h_A 98 SRPGEEQR-LE-A-----------------VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGF 155 (582)
T ss_dssp TSTTCCEE-CT-T-----------------SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEE
T ss_pred cCCCcccc-cc-C-----------------CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceE
Confidence 666542 11 0 01222345555565555554444555577887766655554322 789
Q ss_pred EEeCCCCEEEEEeCCCC-CCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCC-CeEEEEeCCCCCeEEEe
Q psy13635 225 TLSPAHGYLFWSDWNEK-RPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKT-DKIEMIDFDGNNRRELI 302 (357)
Q Consensus 225 avd~~~g~Ly~~d~~~~-~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~-~~I~~~~~dG~~~~~i~ 302 (357)
+++|++..|+++..... ...|+..++++...+.+. ........+++.+++..|+.++... ..|+..+.++...+ +.
T Consensus 156 ~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~ 233 (582)
T 3o4h_A 156 VSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD-SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DL 233 (582)
T ss_dssp EEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEEC-CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-EC
T ss_pred EECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEee-cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ec
Confidence 99998888886654311 147999998877776664 3334568899998888888555432 38999999887766 54
Q ss_pred cCCCCceEEEE--------EE-CCEEEEEeCCCCeEEEEe
Q psy13635 303 NENLPHVFGIS--------LL-GDYVYWTDWQRRSIDRVN 333 (357)
Q Consensus 303 ~~~~~~p~gia--------~~-~~~ly~td~~~~~I~~~~ 333 (357)
......+.+++ +. +|.+|++....+++....
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 234 ELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI 273 (582)
T ss_dssp CCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred cCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEE
Confidence 33222222233 54 346666655555554444
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=98.53 E-value=0.00011 Score=68.38 Aligned_cols=249 Identities=9% Similarity=-0.013 Sum_probs=154.3
Q ss_pred CCcEEEEEcCCCC----cceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcc----eeEEEEeCCcCCce
Q psy13635 49 SKDIRIANLSRPL----KPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVG----SKHNVITNGLITPD 120 (357)
Q Consensus 49 ~~~i~~~~~~~~~----~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~----~~~~~~~~~~~~p~ 120 (357)
...|...+++... .............++++++.++.++.+-..++.|...++...... +....+...-..+.
T Consensus 56 ~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~ 135 (402)
T 2aq5_A 56 GGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135 (402)
T ss_dssp SCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEE
T ss_pred CCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEE
Confidence 4568888875532 122223345578899999844555555556778888887765210 11233344446688
Q ss_pred eEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEe-cCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCe
Q psy13635 121 GLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYW-EDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDR 199 (357)
Q Consensus 121 glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~-~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~ 199 (357)
.+++.+.+++++++-...+.|...++........+. .. .-.....+++.+.+..|+ +....+.
T Consensus 136 ~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~l~-~~~~d~~ 199 (402)
T 2aq5_A 136 IVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDV---------------HPDTIYSVDWSRDGALIC-TSCRDKR 199 (402)
T ss_dssp EEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTT---------------CCSCEEEEEECTTSSCEE-EEETTSE
T ss_pred EEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCC---------------CCCceEEEEECCCCCEEE-EEecCCc
Confidence 899998766777777778899999987654433321 11 112457788887555555 4445678
Q ss_pred EEEEEcCCCceEEEe-cCC-CCCceEEEEeCCCCEEEEEe---CCCCCCeEEEEecCCCce--EEEeeCCCCCceEEEEe
Q psy13635 200 IEVCRLEGTHRKVLV-NTD-LVEPRAITLSPAHGYLFWSD---WNEKRPKIERSLLNGGER--VLLVKDRLGWPNGITLD 272 (357)
Q Consensus 200 I~~~~~~g~~~~~~~-~~~-~~~P~giavd~~~g~Ly~~d---~~~~~~~I~~~~~dg~~~--~~~~~~~l~~P~giaid 272 (357)
|...++......... ... ...+..++++|. +.++.+- .. .+.|...++..... ..........+..++++
T Consensus 200 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~g~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 276 (402)
T 2aq5_A 200 VRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSE-GKILTTGFSRMS--ERQVALWDTKHLEEPLSLQELDTSSGVLLPFFD 276 (402)
T ss_dssp EEEEETTTTEEEEEEECSSCSSSCCEEEECST-TEEEEEEECTTC--CEEEEEEETTBCSSCSEEEECCCCSSCEEEEEE
T ss_pred EEEEeCCCCceeeeeccCCCCCcceEEEEcCC-CcEEEEeccCCC--CceEEEEcCccccCCceEEeccCCCceeEEEEc
Confidence 999998754433332 222 234789999986 6655554 23 36888888875433 22222334567899999
Q ss_pred cCCCEEEEEeCCCCeEEEEeCCCCC--eEEEec-CCCCceEEEEEEC
Q psy13635 273 VDNEKLYWCDAKTDKIEMIDFDGNN--RRELIN-ENLPHVFGISLLG 316 (357)
Q Consensus 273 ~~~~~lY~~d~~~~~I~~~~~dG~~--~~~i~~-~~~~~p~gia~~~ 316 (357)
+.+..||++....+.|...+.+... ...+.. .......++++..
T Consensus 277 ~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp 323 (402)
T 2aq5_A 277 PDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMP 323 (402)
T ss_dssp TTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECC
T ss_pred CCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEec
Confidence 8888999888778889999886554 332321 1223456777764
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=98.52 E-value=0.00025 Score=65.82 Aligned_cols=244 Identities=10% Similarity=-0.047 Sum_probs=153.4
Q ss_pred EEEEEccCCEEEEEeCCCCeEEEEEcCCCCcc-eeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCc---
Q psy13635 75 AIDYYYKKSMVCWTDHGTEMISCCTFDGNNVG-SKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKK--- 150 (357)
Q Consensus 75 ~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~--- 150 (357)
.+++++....+.++...++.|...+++..... .....+...-....++++++.++.++++-..++.|...++....
T Consensus 39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~ 118 (402)
T 2aq5_A 39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL 118 (402)
T ss_dssp SEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS
T ss_pred cEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc
Confidence 35566544455555566778888887654210 00112222334578899987456666676678899999886541
Q ss_pred -----eEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEe--cCCCCCceE
Q psy13635 151 -----RKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLV--NTDLVEPRA 223 (357)
Q Consensus 151 -----~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~--~~~~~~P~g 223 (357)
...+.. --.....+++.+.+++++++....+.|...++......... .........
T Consensus 119 ~~~~~~~~~~~-----------------h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 181 (402)
T 2aq5_A 119 PLREPVITLEG-----------------HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYS 181 (402)
T ss_dssp CBCSCSEEEEC-----------------CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEE
T ss_pred ccCCceEEecC-----------------CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEE
Confidence 122211 11356778888776567767666788999998765544444 334456789
Q ss_pred EEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEe-eCC-CCCceEEEEecCCCEEEEEe---CCCCeEEEEeCCCCCe
Q psy13635 224 ITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLV-KDR-LGWPNGITLDVDNEKLYWCD---AKTDKIEMIDFDGNNR 298 (357)
Q Consensus 224 iavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~-~~~-l~~P~giaid~~~~~lY~~d---~~~~~I~~~~~dG~~~ 298 (357)
++++|....|+.+... +.|...++........+ ... -..+..+++.+ +++++.+- ...+.|...+......
T Consensus 182 ~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd~~~~~~ 257 (402)
T 2aq5_A 182 VDWSRDGALICTSCRD---KRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTKHLEE 257 (402)
T ss_dssp EEECTTSSCEEEEETT---SEEEEEETTTTEEEEEEECSSCSSSCCEEEECS-TTEEEEEEECTTCCEEEEEEETTBCSS
T ss_pred EEECCCCCEEEEEecC---CcEEEEeCCCCceeeeeccCCCCCcceEEEEcC-CCcEEEEeccCCCCceEEEEcCccccC
Confidence 9999875566665544 58888888765544443 222 22368899985 56666665 5678899999865432
Q ss_pred --EEEecCCCCceEEEEEE--CCEEEEEeCCCCeEEEEeCccCce
Q psy13635 299 --RELINENLPHVFGISLL--GDYVYWTDWQRRSIDRVNKITGND 339 (357)
Q Consensus 299 --~~i~~~~~~~p~gia~~--~~~ly~td~~~~~I~~~~~~~g~~ 339 (357)
.............+++. +..++++....+.|...+..+++.
T Consensus 258 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 258 PLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp CSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred CceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence 22222234456778877 467888887788888888766663
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.51 E-value=3.2e-05 Score=69.55 Aligned_cols=251 Identities=10% Similarity=0.105 Sum_probs=148.6
Q ss_pred eEEEEEeCCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCcee
Q psy13635 42 QMLLFATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDG 121 (357)
Q Consensus 42 ~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~g 121 (357)
..++++... +.++|.++.......... .......+. ++.||+.. .++.|++++.+|.. .............
T Consensus 71 g~l~v~t~~-l~~~d~~g~~~~~~~~~~-~~~~~~~~~--~~~l~v~t-~~~~l~~~d~~g~~----~~~~~~~~~~~~~ 141 (330)
T 3hxj_A 71 GTIYFGSDK-VYAINPDGTEKWRFDTKK-AIVSDFTIF--EDILYVTS-MDGHLYAINTDGTE----KWRFKTKKAIYAT 141 (330)
T ss_dssp TEECCSSCE-EEEECCCGGGGGGSCC------CCEEEE--TTEEEEEC-TTSEEEEECTTSCE----EEEEECSSCCCSC
T ss_pred CcEEEecCc-EEEECCCCcEEEEEECCC-CcccCceEE--CCEEEEEe-cCCEEEEEcCCCCE----EEEEcCCCceeee
Confidence 345555555 888887542211111111 011112233 78887764 45689999988542 2222222233456
Q ss_pred EEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEE
Q psy13635 122 LAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIE 201 (357)
Q Consensus 122 lavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~ 201 (357)
+++|. .+.||+.. ..+.|.+++.+|......... ......+++| .++.||++. +.+.
T Consensus 142 ~~~~~-~g~l~vgt-~~~~l~~~d~~g~~~~~~~~~-----------------~~~~~~~~~d-~~g~l~v~t---~~l~ 198 (330)
T 3hxj_A 142 PIVSE-DGTIYVGS-NDNYLYAINPDGTEKWRFKTN-----------------DAITSAASIG-KDGTIYFGS---DKVY 198 (330)
T ss_dssp CEECT-TSCEEEEC-TTSEEEEECTTSCEEEEEECS-----------------SCCCSCCEEC-TTCCEEEES---SSEE
T ss_pred eEEcC-CCEEEEEc-CCCEEEEECCCCCEeEEEecC-----------------CCceeeeEEc-CCCEEEEEe---CEEE
Confidence 67774 67787765 357899999885543332211 1134556777 567888887 6789
Q ss_pred EEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEE
Q psy13635 202 VCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWC 281 (357)
Q Consensus 202 ~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~ 281 (357)
+++.+|+....... ....+.++++++ +|.||++... +.+.+.+.+|....... .....+..+++| .+++||++
T Consensus 199 ~~d~~g~~~~~~~~-~~~~~~~~~~~~-~g~l~v~t~~---~gl~~~~~~g~~~~~~~-~~~~~~~~~~~~-~~g~l~v~ 271 (330)
T 3hxj_A 199 AINPDGTEKWNFYA-GYWTVTRPAISE-DGTIYVTSLD---GHLYAINPDGTEKWRFK-TGKRIESSPVIG-NTDTIYFG 271 (330)
T ss_dssp EECTTSCEEEEECC-SSCCCSCCEECT-TSCEEEEETT---TEEEEECTTSCEEEEEE-CSSCCCSCCEEC-TTSCEEEE
T ss_pred EECCCCcEEEEEcc-CCcceeceEECC-CCeEEEEcCC---CeEEEECCCCCEeEEee-CCCCccccceEc-CCCeEEEe
Confidence 99877765544332 234577888986 4899998865 48888887776554443 222334556776 57899988
Q ss_pred eCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEE-CCEEEEEeCCCCeEEEEeC
Q psy13635 282 DAKTDKIEMIDFDGNNRRELINENLPHVFGISLL-GDYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 282 d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~-~~~ly~td~~~~~I~~~~~ 334 (357)
.. .+.+.+++.+|........ .......+..+ +|.||+.. ..|.+.....
T Consensus 272 t~-~ggl~~~d~~g~~~~~~~~-~~~~~~~~~~d~~g~l~~gt-~~G~~~~~~~ 322 (330)
T 3hxj_A 272 SY-DGHLYAINPDGTEKWNFET-GSWIIATPVIDENGTIYFGT-RNGKFYALFN 322 (330)
T ss_dssp CT-TCEEEEECTTSCEEEEEEC-SSCCCSCCEECTTCCEEEEC-TTSCEEEEEC
T ss_pred cC-CCCEEEECCCCcEEEEEEc-CCccccceEEcCCCEEEEEc-CCCeEEEEec
Confidence 64 4589999987765443322 22334556674 67888875 3456655544
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=98.51 E-value=4.8e-05 Score=76.45 Aligned_cols=286 Identities=9% Similarity=0.043 Sum_probs=157.3
Q ss_pred EEEEEeCCcEEEEEcCCCCcceEeccCCC---cEEEEEEEccCCEEEEEeCC--------CCeEEEEEcCCCCcceeEEE
Q psy13635 43 MLLFATSKDIRIANLSRPLKPVTIIKDLE---EGAAIDYYYKKSMVCWTDHG--------TEMISCCTFDGNNVGSKHNV 111 (357)
Q Consensus 43 ~l~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~i~~d~~~~~ly~~d~~--------~~~I~~~~~~g~~~~~~~~~ 111 (357)
+++.+....|+..|+.++....+....-. .+..+++++++..|..+... .+.|+..++++.. ...
T Consensus 30 ~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~----~~~ 105 (723)
T 1xfd_A 30 FIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD----PQS 105 (723)
T ss_dssp BCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC----CEE
T ss_pred EEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCc----eEe
Confidence 44333345688888877443333322211 37789999988888777432 2578888888764 222
Q ss_pred EeCCc---CCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCc--ceeeeeccCcccccCCceEEEeCC
Q psy13635 112 ITNGL---ITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQP--RAIASYKLPTIEVEHPDGVAVDWV 186 (357)
Q Consensus 112 ~~~~~---~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p--~~i~~~~~~~~~~~~p~glavD~~ 186 (357)
+.... ..+..+++.|.++.|.++.. +.|++.++++.....+...+.... .++.-.....+.+..+.++++.|.
T Consensus 106 l~~~~~~~~~~~~~~~SPdG~~la~~~~--~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpD 183 (723)
T 1xfd_A 106 LDPPEVSNAKLQYAGWGPKGQQLIFIFE--NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPD 183 (723)
T ss_dssp CCCTTCCSCCCSBCCBCSSTTCEEEEET--TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTT
T ss_pred ccCCccccccccccEECCCCCEEEEEEC--CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCC
Confidence 22211 12667889988888887764 689999988766555443211000 000000000000123467888877
Q ss_pred CCeEEEEeCCC---------------------------------CeEEEEEcCCCce-EEEecCC-----CCCceEEEEe
Q psy13635 187 ARNLYWTDTGT---------------------------------DRIEVCRLEGTHR-KVLVNTD-----LVEPRAITLS 227 (357)
Q Consensus 187 ~~~lY~td~~~---------------------------------~~I~~~~~~g~~~-~~~~~~~-----~~~P~giavd 227 (357)
++.|.++.... ..|...+.++... ..+.... ......++++
T Consensus 184 g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~S 263 (723)
T 1xfd_A 184 GTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWA 263 (723)
T ss_dssp SSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEES
T ss_pred CCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEe
Confidence 77777654221 1567777766543 2222110 1234568999
Q ss_pred CCCCEEEEE-eCCCCCCeEEEEecCCCceEEEeeCC-CCC----ceEEEEecCCCEEEEE-eCCCC------eEEEEe-C
Q psy13635 228 PAHGYLFWS-DWNEKRPKIERSLLNGGERVLLVKDR-LGW----PNGITLDVDNEKLYWC-DAKTD------KIEMID-F 293 (357)
Q Consensus 228 ~~~g~Ly~~-d~~~~~~~I~~~~~dg~~~~~~~~~~-l~~----P~giaid~~~~~lY~~-d~~~~------~I~~~~-~ 293 (357)
|.+..|+.. +.......|+..++++.....+.... -.+ +..+++.+++..|+++ ....+ .|+.++ .
T Consensus 264 pDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~ 343 (723)
T 1xfd_A 264 TSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQ 343 (723)
T ss_dssp SSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSS
T ss_pred CCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEecc
Confidence 875455333 33222247888888776655544221 111 2467888777778775 43333 688888 4
Q ss_pred CCCC---eEEEecCCCCceEEEEEE--CCEEEEEeCC----CCeEEEEeC
Q psy13635 294 DGNN---RRELINENLPHVFGISLL--GDYVYWTDWQ----RRSIDRVNK 334 (357)
Q Consensus 294 dG~~---~~~i~~~~~~~p~gia~~--~~~ly~td~~----~~~I~~~~~ 334 (357)
++.. .+.+..........+++. ++.||++... ...|+.++.
T Consensus 344 ~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 344 PNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp CCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred CCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 5554 333322112112224554 5788877643 345888876
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=0.00052 Score=64.19 Aligned_cols=253 Identities=9% Similarity=0.019 Sum_probs=155.4
Q ss_pred CCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCC
Q psy13635 69 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG 148 (357)
Q Consensus 69 ~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g 148 (357)
....+..++|++... +..+...++.|...++.... ....+.........+++++ ++.+..+-+.++.|...++.+
T Consensus 107 h~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~---~~~~l~~h~~~V~~v~~~~-~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGD---FERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp CSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCC---CCEEECCCSSCEEEEEECT-TSSEEEEEETTSCCCEEETTS
T ss_pred cCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCc---EEEEEeccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC
Confidence 445678999998554 55566667888888887654 2334444445678899986 455666666778888888876
Q ss_pred CceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeC
Q psy13635 149 KKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSP 228 (357)
Q Consensus 149 ~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~ 228 (357)
......+. .--.....+++.+.+..| ++....+.|...++..................+++++
T Consensus 182 ~~~~~~~~----------------~h~~~V~~v~~~p~~~~l-~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~ 244 (410)
T 1vyh_C 182 FECIRTMH----------------GHDHNVSSVSIMPNGDHI-VSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ 244 (410)
T ss_dssp SCEEECCC----------------CCSSCEEEEEECSSSSEE-EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT
T ss_pred CceeEEEc----------------CCCCCEEEEEEeCCCCEE-EEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECC
Confidence 54322111 011245678888655544 4555667888888875443333333445677888887
Q ss_pred CCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCC-------------------CEEEEEeCCCCeEE
Q psy13635 229 AHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDN-------------------EKLYWCDAKTDKIE 289 (357)
Q Consensus 229 ~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~-------------------~~lY~~d~~~~~I~ 289 (357)
. |.++.+-... +.|...++........+...-.....+++.+.. +.+.++-...+.|.
T Consensus 245 ~-g~~l~s~s~D--~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~ 321 (410)
T 1vyh_C 245 D-GTLIASCSND--QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321 (410)
T ss_dssp T-SSEEEEEETT--SCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEE
T ss_pred C-CCEEEEEcCC--CeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEE
Confidence 6 4444444332 477777776554444443333445677776431 45566666778898
Q ss_pred EEeCCCCCeEEEecCCCCceEEEEEE-CCEEEEEeCCCCeEEEEeCccCceeEEEecc
Q psy13635 290 MIDFDGNNRRELINENLPHVFGISLL-GDYVYWTDWQRRSIDRVNKITGNDREVIIER 346 (357)
Q Consensus 290 ~~~~dG~~~~~i~~~~~~~p~gia~~-~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~ 346 (357)
..+.........+........++++. ++...++-...+.|...+..+++....+...
T Consensus 322 iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h 379 (410)
T 1vyh_C 322 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH 379 (410)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC
T ss_pred EEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCC
Confidence 88876544333333344456778876 3455555556678888887667666655443
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=98.50 E-value=6.9e-05 Score=70.63 Aligned_cols=241 Identities=9% Similarity=0.081 Sum_probs=152.7
Q ss_pred ecCCCCeEEEEEe--CCcEEEEEcCC----------CCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCC
Q psy13635 36 SHHVAAQMLLFAT--SKDIRIANLSR----------PLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGN 103 (357)
Q Consensus 36 ~~~~~~~~l~~~~--~~~i~~~~~~~----------~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~ 103 (357)
..++..+.++++. ...|+..++.. .............+.++++++.+..++.+...++.|...++...
T Consensus 135 ~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~ 214 (430)
T 2xyi_A 135 RYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINAT 214 (430)
T ss_dssp EEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSC
T ss_pred EECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCC
Confidence 3343334444443 44688888864 12233333445567889999876646667777888998888763
Q ss_pred Cccee----EEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCC----ceEEEEecCCCCcceeeeeccCcccc
Q psy13635 104 NVGSK----HNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGK----KRKVLYWEDIDQPRAIASYKLPTIEV 175 (357)
Q Consensus 104 ~~~~~----~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~----~~~~~~~~~~~~p~~i~~~~~~~~~~ 175 (357)
..... .......-..+..+++.+.++.++++....+.|...++... ....+.. .-
T Consensus 215 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~-----------------~~ 277 (430)
T 2xyi_A 215 PKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA-----------------HT 277 (430)
T ss_dssp CBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC-----------------CS
T ss_pred CCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec-----------------CC
Confidence 21000 12233334567889999878889999888999999998754 1222211 11
Q ss_pred cCCceEEEeCCCCeEEEEeCCCCeEEEEEcCC-CceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCC-
Q psy13635 176 EHPDGVAVDWVARNLYWTDTGTDRIEVCRLEG-THRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGG- 253 (357)
Q Consensus 176 ~~p~glavD~~~~~lY~td~~~~~I~~~~~~g-~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~- 253 (357)
..+..+++.+.+..++++....+.|...++.. ................++++|.+..++.+.... +.|...++...
T Consensus 278 ~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d--~~i~iwd~~~~~ 355 (430)
T 2xyi_A 278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD--RRLHVWDLSKIG 355 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETT--SCCEEEEGGGTT
T ss_pred CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCC--CcEEEEeCCCCc
Confidence 25678899887878888888888999999875 322222223345688999999766677766553 46666665531
Q ss_pred -------------ceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCC
Q psy13635 254 -------------ERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDG 295 (357)
Q Consensus 254 -------------~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG 295 (357)
.........-..+..+++.+.+..++++-...+.|...+++.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 356 EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp CCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred cccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 122222223446899999866554777777778777777653
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.50 E-value=0.00073 Score=62.72 Aligned_cols=239 Identities=11% Similarity=-0.014 Sum_probs=154.2
Q ss_pred EEeecCCCCeEEEEEe-CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEE
Q psy13635 33 YALSHHVAAQMLLFAT-SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV 111 (357)
Q Consensus 33 ~~~~~~~~~~~l~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~ 111 (357)
.+++-++...+|+.+. ...|+..|+..................++++ .+ ++.+...++.|...++.... .....
T Consensus 138 ~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~--~~~~~ 212 (401)
T 4aez_A 138 ASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RH-VLSSGSRSGAIHHHDVRIAN--HQIGT 212 (401)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TT-EEEEEETTSEEEEEETTSSS--CEEEE
T ss_pred EEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CC-EEEEEcCCCCEEEEecccCc--ceeeE
Confidence 3444455556666665 4568899987755455555556677888885 33 55555667889988887433 22344
Q ss_pred EeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEE
Q psy13635 112 ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLY 191 (357)
Q Consensus 112 ~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY 191 (357)
+......+.++++.+ .+.++++-...+.|...++........... .-.....+++.+.++.++
T Consensus 213 ~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~----------------~~~~v~~~~~~p~~~~ll 275 (401)
T 4aez_A 213 LQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIPKFTKTN----------------HNAAVKAVAWCPWQSNLL 275 (401)
T ss_dssp EECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSEEEEECC----------------CSSCCCEEEECTTSTTEE
T ss_pred EcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCccEEecC----------------CcceEEEEEECCCCCCEE
Confidence 444456788999997 455555555678999999876544333211 113567889988788888
Q ss_pred EEeC--CCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEE--eeCCCCCce
Q psy13635 192 WTDT--GTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLL--VKDRLGWPN 267 (357)
Q Consensus 192 ~td~--~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~--~~~~l~~P~ 267 (357)
.+.. ..+.|...++.......... .-.....++++|....|+.+.... .+.|...++........ +........
T Consensus 276 ~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~-dg~i~v~~~~~~~~~~~~~~~~h~~~v~ 353 (401)
T 4aez_A 276 ATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFP-DNNLSIWSYSSSGLTKQVDIPAHDTRVL 353 (401)
T ss_dssp EEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTT-TCEEEEEEEETTEEEEEEEEECCSSCCC
T ss_pred EEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecC-CCcEEEEecCCccceeEEEecCCCCCEE
Confidence 8865 46789999987544433332 235688999999866777665322 25888888776444333 234445678
Q ss_pred EEEEecCCCEEEEEeCCCCeEEEEeCCCC
Q psy13635 268 GITLDVDNEKLYWCDAKTDKIEMIDFDGN 296 (357)
Q Consensus 268 giaid~~~~~lY~~d~~~~~I~~~~~dG~ 296 (357)
++++.+.+..| ++-...+.|...+....
T Consensus 354 ~~~~s~dg~~l-~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 354 YSALSPDGRIL-STAASDENLKFWRVYDG 381 (401)
T ss_dssp EEEECTTSSEE-EEECTTSEEEEEECCC-
T ss_pred EEEECCCCCEE-EEEeCCCcEEEEECCCC
Confidence 89998655444 45556778888887543
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=0.00042 Score=63.70 Aligned_cols=282 Identities=7% Similarity=-0.006 Sum_probs=159.0
Q ss_pred eecCC-CCeEEEEEe-CCcEEEEEcCCCCcceEec-------------cCCCcEEEEEEEccCCEEEEEeCCCCeEEEEE
Q psy13635 35 LSHHV-AAQMLLFAT-SKDIRIANLSRPLKPVTII-------------KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCT 99 (357)
Q Consensus 35 ~~~~~-~~~~l~~~~-~~~i~~~~~~~~~~~~~~~-------------~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~ 99 (357)
+.-++ ...+|+.+. ...|+..++.......... .......++++.+.++.++.+-..++.|...+
T Consensus 49 ~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 128 (408)
T 4a11_B 49 LDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWD 128 (408)
T ss_dssp EEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEE
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEee
Confidence 33344 445555555 5568889987643222211 24557889999986666667766778899999
Q ss_pred cCCCCcceeEEEEeCCcCCceeEEEEcCCC--eEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccC
Q psy13635 100 FDGNNVGSKHNVITNGLITPDGLAIDWLTE--KLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEH 177 (357)
Q Consensus 100 ~~g~~~~~~~~~~~~~~~~p~glavd~~~~--~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~ 177 (357)
+.... ...... .......+++.+.+. .++++....+.|...++........... .-..
T Consensus 129 ~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~----------------~~~~ 188 (408)
T 4a11_B 129 TNTLQ---TADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQG----------------HRQE 188 (408)
T ss_dssp TTTTE---EEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECC----------------CCSC
T ss_pred CCCCc---cceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecC----------------CCCc
Confidence 88763 122222 233456677765432 3556666678888888865433222211 1124
Q ss_pred CceEEEeCCCCeEEEEeCCCCeEEEEEcCCCc-eEEEe---------------cCCCCCceEEEEeCCCCEEEEEeCCCC
Q psy13635 178 PDGVAVDWVARNLYWTDTGTDRIEVCRLEGTH-RKVLV---------------NTDLVEPRAITLSPAHGYLFWSDWNEK 241 (357)
Q Consensus 178 p~glavD~~~~~lY~td~~~~~I~~~~~~g~~-~~~~~---------------~~~~~~P~giavd~~~g~Ly~~d~~~~ 241 (357)
..++++.+.+..++++....+.|...++.... ..... .........++++|....|+.+...
T Consensus 189 v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-- 266 (408)
T 4a11_B 189 ILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTD-- 266 (408)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETT--
T ss_pred EEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCC--
Confidence 56788887777777777667788888876432 11111 1123457889999876666666554
Q ss_pred CCeEEEEecCCCceEEEeeCC------CCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEE
Q psy13635 242 RPKIERSLLNGGERVLLVKDR------LGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLL 315 (357)
Q Consensus 242 ~~~I~~~~~dg~~~~~~~~~~------l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~ 315 (357)
+.|...++............ .........+ ..+.+.++ ...+.|...+.........+........++++.
T Consensus 267 -g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s 343 (408)
T 4a11_B 267 -NRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCG-CSSEFVFV-PYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQ 343 (408)
T ss_dssp -SCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCS-SSSCEEEE-EETTEEEEEETTTCCEEEEECCCSSCEEEEEEE
T ss_pred -CeEEEEECCCCccceeccccccccccccceeEEecC-CCceEEEE-ecCCEEEEEECcCCcceeeeccCCCeEEEEEEc
Confidence 57888887654332221110 0111122222 22233332 234678888875544444444444566788887
Q ss_pred C-CEEEEEeCCCCeEEEEeCccCceeE
Q psy13635 316 G-DYVYWTDWQRRSIDRVNKITGNDRE 341 (357)
Q Consensus 316 ~-~~ly~td~~~~~I~~~~~~~g~~~~ 341 (357)
. +.++++-...+.|...+..+++...
T Consensus 344 ~~~~~l~s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 344 SNFQELYSGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp TTTTEEEEEETTSCEEEEEECC-----
T ss_pred CCCCEEEEECCCCeEEEEeCCCCCccC
Confidence 3 4555555566788777765555443
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=98.47 E-value=0.0014 Score=64.63 Aligned_cols=278 Identities=10% Similarity=0.007 Sum_probs=157.5
Q ss_pred ecCCCCeEEEEEeCCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCC
Q psy13635 36 SHHVAAQMLLFATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNG 115 (357)
Q Consensus 36 ~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 115 (357)
+-++....|+++..+.++..++..................++|+|.+..| .+-..++.|+..++..... .....+...
T Consensus 25 ~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l-asg~~d~~v~lWd~~~~~~-~~~~~~~~~ 102 (611)
T 1nr0_A 25 GNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYC-ASGDVHGNVRIWDTTQTTH-ILKTTIPVF 102 (611)
T ss_dssp EECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEE-EEEETTSEEEEEESSSTTC-CEEEEEECS
T ss_pred eeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEE-EEEeCCCCEEEeECCCCcc-eeeEeeccc
Confidence 33555667888888888888987545555555566678999999865544 4555567888888753321 112223323
Q ss_pred cCCceeEEEEcCCCeEEEEeCCC---CEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEE
Q psy13635 116 LITPDGLAIDWLTEKLYWTDSET---NKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYW 192 (357)
Q Consensus 116 ~~~p~glavd~~~~~ly~td~~~---~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~ 192 (357)
-.....+++++.++.|..+..+. ++|...+. |.....+ ...-.....+++.|.+..+++
T Consensus 103 ~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~-~~~~~~l-----------------~gh~~~v~~v~f~p~~~~~l~ 164 (611)
T 1nr0_A 103 SGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT-GTSNGNL-----------------TGQARAMNSVDFKPSRPFRII 164 (611)
T ss_dssp SSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT-CCBCBCC-----------------CCCSSCEEEEEECSSSSCEEE
T ss_pred CCceEEEEECCCCCEEEEEECCCCceeEEEEeeC-CCCccee-----------------cCCCCCceEEEECCCCCeEEE
Confidence 34678899998877777665443 24544432 2111111 111124567888876666666
Q ss_pred EeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEee-------CCCCC
Q psy13635 193 TDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVK-------DRLGW 265 (357)
Q Consensus 193 td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~-------~~l~~ 265 (357)
+....+.|...+...................++++|. |.++.+-... +.|...+.........+. ..-..
T Consensus 165 s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspd-g~~las~s~D--~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~ 241 (611)
T 1nr0_A 165 SGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD-GSLFASTGGD--GTIVLYNGVDGTKTGVFEDDSLKNVAHSGS 241 (611)
T ss_dssp EEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTT-SSEEEEEETT--SCEEEEETTTCCEEEECBCTTSSSCSSSSC
T ss_pred EEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCC-CCEEEEEECC--CcEEEEECCCCcEeeeeccccccccccCCC
Confidence 7776778888876544333333344456889999987 4444444332 477777765443333331 12345
Q ss_pred ceEEEEecCCCEEEEEeCCCCeEEEEeCCCCC-eEEEecCC--CCceEEEEEECCEEEEEeCCCCeEEEEeCccCc
Q psy13635 266 PNGITLDVDNEKLYWCDAKTDKIEMIDFDGNN-RRELINEN--LPHVFGISLLGDYVYWTDWQRRSIDRVNKITGN 338 (357)
Q Consensus 266 P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~-~~~i~~~~--~~~p~gia~~~~~ly~td~~~~~I~~~~~~~g~ 338 (357)
..++++.+.+..| .+-...+.|...+..... ...+.... .....++..++.. .++-...+.|...+..+++
T Consensus 242 V~~v~~spdg~~l-~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~s~d~~i~~~~~~~~~ 315 (611)
T 1nr0_A 242 VFGLTWSPDGTKI-ASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA-LVSISANGFINFVNPELGS 315 (611)
T ss_dssp EEEEEECTTSSEE-EEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSC-EEEEETTCCEEEEETTTTE
T ss_pred EEEEEECCCCCEE-EEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCE-EEEEeCCCcEEEEeCCCCC
Confidence 6889998655444 555566788888876433 22222111 1123444443333 3333344555555554443
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=98.46 E-value=5.7e-05 Score=69.48 Aligned_cols=237 Identities=5% Similarity=-0.050 Sum_probs=142.2
Q ss_pred CCCCeEEEEEeCCcEEEEEcCCCCcc---eE-eccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEe
Q psy13635 38 HVAAQMLLFATSKDIRIANLSRPLKP---VT-IIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT 113 (357)
Q Consensus 38 ~~~~~~l~~~~~~~i~~~~~~~~~~~---~~-~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~ 113 (357)
+++..++.-+....|+..|+...... .. ....-....++++.+.+..|. +-..++.|+..++.... ....+.
T Consensus 103 s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~-sgs~dg~v~iwd~~~~~---~~~~~~ 178 (357)
T 4g56_B 103 VSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAV-SGGKDFSVKVWDLSQKA---VLKSYN 178 (357)
T ss_dssp ETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEE-EEETTSCEEEEETTTTE---EEEEEC
T ss_pred cCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEE-EEeCCCeEEEEECCCCc---EEEEEc
Confidence 44555665555667888787653211 11 112344678999998665554 54556788888887653 233343
Q ss_pred CCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEE
Q psy13635 114 NGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWT 193 (357)
Q Consensus 114 ~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~t 193 (357)
..-.....+++.+.++.++.+...++.|...++........... ...-..+..+++.|.++.++.+
T Consensus 179 ~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~--------------~~~~~~v~~v~~sp~~~~~la~ 244 (357)
T 4g56_B 179 AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF--------------CASDTIPTSVTWHPEKDDTFAC 244 (357)
T ss_dssp CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC--------------TTCCSCEEEEEECTTSTTEEEE
T ss_pred CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee--------------ccccccccchhhhhcccceEEE
Confidence 34456788999877777888877788888887754322111100 1111246678888877888877
Q ss_pred eCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEec
Q psy13635 194 DTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDV 273 (357)
Q Consensus 194 d~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~ 273 (357)
....+.|...++..................++++|..+++..+-... +.|...+.+........ ..-....++++.|
T Consensus 245 g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D--~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP 321 (357)
T 4g56_B 245 GDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISED--CTVAVLDADFSEVFRDL-SHRDFVTGVAWSP 321 (357)
T ss_dssp EESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETT--SCEEEECTTSCEEEEEC-CCSSCEEEEEECS
T ss_pred eecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCC--CEEEEEECCCCcEeEEC-CCCCCEEEEEEeC
Confidence 76677899888775443333333445678999998765554443332 57877887765444333 2234568899987
Q ss_pred CCCEEEEEeCCCCeEEEEeCCC
Q psy13635 274 DNEKLYWCDAKTDKIEMIDFDG 295 (357)
Q Consensus 274 ~~~~lY~~d~~~~~I~~~~~dG 295 (357)
.++.++.+-...+.|..-++..
T Consensus 322 ~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 322 LDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp SSTTEEEEEETTSCEEEEECC-
T ss_pred CCCCEEEEEcCCCeEEEEECCC
Confidence 5666666665667777776643
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.46 E-value=0.00083 Score=63.46 Aligned_cols=196 Identities=13% Similarity=0.031 Sum_probs=121.1
Q ss_pred CceeEEEEcCCCeEEEEeCCCCEEEEEEcC--CC-ceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEe
Q psy13635 118 TPDGLAIDWLTEKLYWTDSETNKLEVSSLD--GK-KRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTD 194 (357)
Q Consensus 118 ~p~glavd~~~~~ly~td~~~~~I~~~~~~--g~-~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td 194 (357)
.+.++++++.++.|+++....+.|...++. +. ....+..... -..+.++++++.+..|+.++
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~---------------~~~v~~~~~sp~~~~l~~~~ 168 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCF---------------SKRPNAISIAEDDTTVIIAD 168 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEEC---------------SSCEEEEEECTTSSEEEEEE
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccC---------------CCCceEEEEcCCCCEEEEEe
Confidence 467899998777777877778899998877 43 3333321111 12567889998777777766
Q ss_pred CCCCeEEEEEcCCCceEE----EecCCCCCceEEEEeCC---CCEEEEEeCCCCCCeEEEEecCCCceE-EEeeCCCCCc
Q psy13635 195 TGTDRIEVCRLEGTHRKV----LVNTDLVEPRAITLSPA---HGYLFWSDWNEKRPKIERSLLNGGERV-LLVKDRLGWP 266 (357)
Q Consensus 195 ~~~~~I~~~~~~g~~~~~----~~~~~~~~P~giavd~~---~g~Ly~~d~~~~~~~I~~~~~dg~~~~-~~~~~~l~~P 266 (357)
. .+.|...++....... ...........++++|. +..|+.+... +.|...++...... .+....-..+
T Consensus 169 ~-~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~h~~~v 244 (450)
T 2vdu_B 169 K-FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRD---EHIKISHYPQCFIVDKWLFGHKHFV 244 (450)
T ss_dssp T-TSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETT---SCEEEEEESCTTCEEEECCCCSSCE
T ss_pred C-CCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCC---CcEEEEECCCCceeeeeecCCCCce
Confidence 5 5678888875433211 11123356789999986 4455555544 47777777654443 3333344567
Q ss_pred eEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecC-------------------------CCCceEEEEEE--CCEE
Q psy13635 267 NGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINE-------------------------NLPHVFGISLL--GDYV 319 (357)
Q Consensus 267 ~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~-------------------------~~~~p~gia~~--~~~l 319 (357)
..+++. .+..|+.+ ...+.|...+.........+.. .-....++++. +..+
T Consensus 245 ~~~~~s-d~~~l~s~-~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 322 (450)
T 2vdu_B 245 SSICCG-KDYLLLSA-GGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFV 322 (450)
T ss_dssp EEEEEC-STTEEEEE-ESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEE
T ss_pred EEEEEC-CCCEEEEE-eCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEE
Confidence 899997 55555544 4677899999865443222210 01124456665 4678
Q ss_pred EEEeCCCCeEEEEeC
Q psy13635 320 YWTDWQRRSIDRVNK 334 (357)
Q Consensus 320 y~td~~~~~I~~~~~ 334 (357)
+.+....+.|...+.
T Consensus 323 ~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 323 AFFVEATKCIIILEM 337 (450)
T ss_dssp EEEETTCSEEEEEEE
T ss_pred EEEECCCCeEEEEEe
Confidence 888756677776665
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=98.44 E-value=0.00015 Score=65.14 Aligned_cols=258 Identities=9% Similarity=0.026 Sum_probs=144.6
Q ss_pred CCeEEEEEe-CCcEEEEEcCCCC---cceEeccCCCcEEEEEEEccCC-EEEEEeCCCCeEEEEEc-CCCCcceeEEEEe
Q psy13635 40 AAQMLLFAT-SKDIRIANLSRPL---KPVTIIKDLEEGAAIDYYYKKS-MVCWTDHGTEMISCCTF-DGNNVGSKHNVIT 113 (357)
Q Consensus 40 ~~~~l~~~~-~~~i~~~~~~~~~---~~~~~~~~~~~~~~i~~d~~~~-~ly~~d~~~~~I~~~~~-~g~~~~~~~~~~~ 113 (357)
...+|+.+. ...|+..++.... ...........+..+++.+.+. .|+.+. .++.|+..++ ++.. ...+.
T Consensus 22 ~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~----~~~~~ 96 (342)
T 1yfq_A 22 SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT-VQGEILKVDLIGSPS----FQALT 96 (342)
T ss_dssp GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEE-TTSCEEEECSSSSSS----EEECB
T ss_pred CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEc-CCCeEEEEEeccCCc----eEecc
Confidence 344555554 4568888876643 1333445566788999998766 565554 5678999998 7664 34444
Q ss_pred C--CcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCC---CceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCC
Q psy13635 114 N--GLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG---KKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVAR 188 (357)
Q Consensus 114 ~--~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g---~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~ 188 (357)
. .-.....+++.+ +.++++-...+.|...++.. ..... ....+.. ...-..+.++++++.
T Consensus 97 ~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~----------~~~~~~v~~~~~~~~-- 161 (342)
T 1yfq_A 97 NNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAV-KNLNSNN----------TKVKNKIFTMDTNSS-- 161 (342)
T ss_dssp SCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEE-EESCSSS----------SSSCCCEEEEEECSS--
T ss_pred ccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccc-cCCeeeE----------EeeCCceEEEEecCC--
Confidence 4 445678899997 45555555678888887653 00000 0000000 001124556666633
Q ss_pred eEEEEeCCCCeEEEEEcCC-Cc--eEEEecCCCCCceEEEEeC-CCCEEEEEeCCCCCCeEEEEecCCC------ceEEE
Q psy13635 189 NLYWTDTGTDRIEVCRLEG-TH--RKVLVNTDLVEPRAITLSP-AHGYLFWSDWNEKRPKIERSLLNGG------ERVLL 258 (357)
Q Consensus 189 ~lY~td~~~~~I~~~~~~g-~~--~~~~~~~~~~~P~giavd~-~~g~Ly~~d~~~~~~~I~~~~~dg~------~~~~~ 258 (357)
.++.+ ...+.|...++.. .. ........-..+..++++| ....++.+... +.|...+++.. .....
T Consensus 162 ~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d---g~i~i~~~~~~~~~~~~~~~~~ 237 (342)
T 1yfq_A 162 RLIVG-MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSID---GRVAVEFFDDQGDDYNSSKRFA 237 (342)
T ss_dssp EEEEE-ESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETT---SEEEEEECCTTCCSTTCTTCEE
T ss_pred cEEEE-eCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecC---CcEEEEEEcCCCccccccccee
Confidence 34444 4456888888776 22 2223223345678999998 65555555543 46666555443 22223
Q ss_pred eeCCC---------CCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCC-CCceEEEEEECCEEEEE
Q psy13635 259 VKDRL---------GWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINEN-LPHVFGISLLGDYVYWT 322 (357)
Q Consensus 259 ~~~~l---------~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~-~~~p~gia~~~~~ly~t 322 (357)
+.... .....+++.+.+..|+.+ ...+.|...+.........+... .....+++.++..|..+
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~ 310 (342)
T 1yfq_A 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTA-GSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLA 310 (342)
T ss_dssp EECCCCCTTCCSSCCCEEEEEECTTTCCEEEE-ETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEE
T ss_pred eecccccccccccceeEEEEEEcCCCCEEEEe-cCCceEEEEcCccHhHhhhhhcccCCCceEecCCCCeEEEE
Confidence 32221 266889998655555544 45678999998754443333333 33446677223344433
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=0.00036 Score=73.45 Aligned_cols=154 Identities=13% Similarity=0.083 Sum_probs=96.7
Q ss_pred ceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCC----------CCCceEEEEe-CCCCEEEEEeCCCCCCeEEE
Q psy13635 179 DGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTD----------LVEPRAITLS-PAHGYLFWSDWNEKRPKIER 247 (357)
Q Consensus 179 ~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~----------~~~P~giavd-~~~g~Ly~~d~~~~~~~I~~ 247 (357)
...++.+.++.|.++. .+.|...++.+.....+.... ...+..++++ |.+..|.++.. +.|+.
T Consensus 248 ~~~~~SpDG~~la~~~--~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~----~~i~~ 321 (1045)
T 1k32_A 248 YPRHLNTDGRRILFSK--GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSR----GQAFI 321 (1045)
T ss_dssp CEEEEEESSSCEEEEE--TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEET----TEEEE
T ss_pred ceeeEcCCCCEEEEEe--CCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEEc----CEEEE
Confidence 3456776666676663 457888877554433221100 1147899999 98667777762 48888
Q ss_pred EecCCCceEEEeeCCCC-CceEEEEecCCCEEEEEeCCCCeEE-EEeCCCCCeEEEecCCCCceEEEEEE--CCEEEEEe
Q psy13635 248 SLLNGGERVLLVKDRLG-WPNGITLDVDNEKLYWCDAKTDKIE-MIDFDGNNRRELINENLPHVFGISLL--GDYVYWTD 323 (357)
Q Consensus 248 ~~~dg~~~~~~~~~~l~-~P~giaid~~~~~lY~~d~~~~~I~-~~~~dG~~~~~i~~~~~~~p~gia~~--~~~ly~td 323 (357)
.+.++.....+. .... .+..+++. ++..|+++.. ...++ ..+.++.....+. .....+..+++. +..|+++.
T Consensus 322 ~~~~~~~~~~~~-~~~~~~~~~~~~s-dg~~l~~~s~-~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpDG~~la~~~ 397 (1045)
T 1k32_A 322 QDVSGTYVLKVP-EPLRIRYVRRGGD-TKVAFIHGTR-EGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGKFAVVAN 397 (1045)
T ss_dssp ECTTSSBEEECS-CCSCEEEEEECSS-SEEEEEEEET-TEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSSEEEEEE
T ss_pred EcCCCCceEEcc-CCCcceEEeeeEc-CCCeEEEEEC-CCceEEEEECCCCCceEec-CCccceeeeEECCCCCEEEEEC
Confidence 888876554432 2222 45566665 5556766655 56888 8888877665554 344566777775 45666665
Q ss_pred CCCCeEEEEeCccCceeEEE
Q psy13635 324 WQRRSIDRVNKITGNDREVI 343 (357)
Q Consensus 324 ~~~~~I~~~~~~~g~~~~~i 343 (357)
. .+.|+.++..+|+...++
T Consensus 398 ~-~~~v~~~d~~tg~~~~~~ 416 (1045)
T 1k32_A 398 D-RFEIMTVDLETGKPTVIE 416 (1045)
T ss_dssp T-TSEEEEEETTTCCEEEEE
T ss_pred C-CCeEEEEECCCCceEEec
Confidence 3 468888888777766554
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00017 Score=75.93 Aligned_cols=268 Identities=11% Similarity=0.009 Sum_probs=165.3
Q ss_pred CCCeEEEEEeCCcEEEEEcCCCCcceEeccCCC-cEEEEEEEccCCEEEEEeCCCCeEE-EEEcCCCCcceeEEEEeCCc
Q psy13635 39 VAAQMLLFATSKDIRIANLSRPLKPVTIIKDLE-EGAAIDYYYKKSMVCWTDHGTEMIS-CCTFDGNNVGSKHNVITNGL 116 (357)
Q Consensus 39 ~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~i~~d~~~~~ly~~d~~~~~I~-~~~~~g~~~~~~~~~~~~~~ 116 (357)
+....+++.....++.+++.+. ....+..... .+..+++. ++..|+++.. ...|+ ..++++.. ...+....
T Consensus 306 pdG~~la~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~-~~~l~~~~d~~~~~----~~~l~~~~ 378 (1045)
T 1k32_A 306 LDGDLIAFVSRGQAFIQDVSGT-YVLKVPEPLRIRYVRRGGD-TKVAFIHGTR-EGDFLGIYDYRTGK----AEKFEENL 378 (1045)
T ss_dssp CGGGCEEEEETTEEEEECTTSS-BEEECSCCSCEEEEEECSS-SEEEEEEEET-TEEEEEEEETTTCC----EEECCCCC
T ss_pred CCCCEEEEEEcCEEEEEcCCCC-ceEEccCCCcceEEeeeEc-CCCeEEEEEC-CCceEEEEECCCCC----ceEecCCc
Confidence 4445577777778888888763 3333333333 56777787 6667776655 56788 78887764 33333344
Q ss_pred CCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC
Q psy13635 117 ITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG 196 (357)
Q Consensus 117 ~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~ 196 (357)
..+..+++.+.++.|+++.. .+.|...++.+.....+.... .....++++.+.++.|.++...
T Consensus 379 ~~~~~~~~SpDG~~la~~~~-~~~v~~~d~~tg~~~~~~~~~----------------~~~v~~~~~SpDG~~la~~~~~ 441 (1045)
T 1k32_A 379 GNVFAMGVDRNGKFAVVAND-RFEIMTVDLETGKPTVIERSR----------------EAMITDFTISDNSRFIAYGFPL 441 (1045)
T ss_dssp CSEEEEEECTTSSEEEEEET-TSEEEEEETTTCCEEEEEECS----------------SSCCCCEEECTTSCEEEEEEEE
T ss_pred cceeeeEECCCCCEEEEECC-CCeEEEEECCCCceEEeccCC----------------CCCccceEECCCCCeEEEEecC
Confidence 56789999988888877664 568999999776555544221 1134678888888888776542
Q ss_pred C---------CeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCC---------------CCeEEEEec--
Q psy13635 197 T---------DRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEK---------------RPKIERSLL-- 250 (357)
Q Consensus 197 ~---------~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~---------------~~~I~~~~~-- 250 (357)
. ..|...+.++.....+. .....+..++++|.+.+||++..... ..+++.+.+
T Consensus 442 ~~~~~~~~~~~~i~l~d~~~g~~~~l~-~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (1045)
T 1k32_A 442 KHGETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIP 520 (1045)
T ss_dssp CSSTTCSCCEEEEEEEETTTTEEEECS-CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESST
T ss_pred ccccccCCCCCeEEEEECCCCcEEEee-CCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCC
Confidence 2 48999998876544333 34456788999998888998875321 011222211
Q ss_pred ----------------------CCCc-eEEEeeCCCCCceEEEEecCCCEEEEE-------------eCCCCeEEEEeCC
Q psy13635 251 ----------------------NGGE-RVLLVKDRLGWPNGITLDVDNEKLYWC-------------DAKTDKIEMIDFD 294 (357)
Q Consensus 251 ----------------------dg~~-~~~~~~~~l~~P~giaid~~~~~lY~~-------------d~~~~~I~~~~~d 294 (357)
+|.. +...+...-....++++.+ ++.++++ ......|+.+++.
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~-dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~ 599 (1045)
T 1k32_A 521 GSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLE-SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK 599 (1045)
T ss_dssp TCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECS-SEEEEEECCCCCSHHHHHHCCCCCEEEEEEETT
T ss_pred CCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcC-CCeEEEEecccCcccccccccCCCceEEEEECC
Confidence 1110 1111111112346788874 5565553 2345689999987
Q ss_pred CCCeEEEecCCCCceEEEEEE--CCEEEEEeCCCCeEEEEeCccCc
Q psy13635 295 GNNRRELINENLPHVFGISLL--GDYVYWTDWQRRSIDRVNKITGN 338 (357)
Q Consensus 295 G~~~~~i~~~~~~~p~gia~~--~~~ly~td~~~~~I~~~~~~~g~ 338 (357)
+...+.+. ..+.++++. +..|+++... .|..++..+++
T Consensus 600 ~~~~~~l~----~~v~~~~~S~DG~~l~~~~~~--~i~~~d~~~~~ 639 (1045)
T 1k32_A 600 TRKVTEVK----NNLTDLRLSADRKTVMVRKDD--GKIYTFPLEKP 639 (1045)
T ss_dssp TCCEEEEE----EEEEEEEECTTSCEEEEEETT--SCEEEEESSCT
T ss_pred CCcEEEee----cCcceEEECCCCCEEEEEcCC--cEEEEeCccCc
Confidence 76665444 345666665 5688888644 67777765666
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.42 E-value=0.00094 Score=60.26 Aligned_cols=259 Identities=9% Similarity=-0.015 Sum_probs=153.7
Q ss_pred cCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcC
Q psy13635 68 KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD 147 (357)
Q Consensus 68 ~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~ 147 (357)
..-....++++++.+..|+.+ ..++.|...++.... ....+...-....++++++.++ .+++-..++.|...++.
T Consensus 30 ~h~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~ 104 (369)
T 3zwl_B 30 GHERPLTQVKYNKEGDLLFSC-SKDSSASVWYSLNGE---RLGTLDGHTGTIWSIDVDCFTK-YCVTGSADYSIKLWDVS 104 (369)
T ss_dssp CCSSCEEEEEECTTSCEEEEE-ESSSCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETT
T ss_pred EeeceEEEEEEcCCCCEEEEE-eCCCEEEEEeCCCch---hhhhhhhcCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECC
Confidence 344568889999865555544 456778888877653 2334444445678899987554 44555567899999987
Q ss_pred CCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC----CCeEEEEEcCCCc------------eE
Q psy13635 148 GKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG----TDRIEVCRLEGTH------------RK 211 (357)
Q Consensus 148 g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~----~~~I~~~~~~g~~------------~~ 211 (357)
........... ..+..+++.+.+..++.+... .+.|...++.... ..
T Consensus 105 ~~~~~~~~~~~-----------------~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~ 167 (369)
T 3zwl_B 105 NGQCVATWKSP-----------------VPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIH 167 (369)
T ss_dssp TCCEEEEEECS-----------------SCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSE
T ss_pred CCcEEEEeecC-----------------CCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceee
Confidence 65544333211 246778888776666655443 1567666654321 11
Q ss_pred EE-ecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCC-CceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEE
Q psy13635 212 VL-VNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNG-GERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIE 289 (357)
Q Consensus 212 ~~-~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg-~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~ 289 (357)
.+ ..........++++|....|+.+... +.|...++.. ......+...-....++++++.+..|+.+ ...+.|.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~ 243 (369)
T 3zwl_B 168 KIITHEGLDAATVAGWSTKGKYIIAGHKD---GKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITS-SRDTNSF 243 (369)
T ss_dssp EEECCTTCCCEEEEEECGGGCEEEEEETT---SEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEE-ETTSEEE
T ss_pred eccCCcCccceeEEEEcCCCCEEEEEcCC---CEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEe-cCCceEE
Confidence 11 11122367889999876666666554 5888888876 34444444444567899998665555544 4567899
Q ss_pred EEeCCCCCeEEEecCCCCceEEEEEE--CCEEEEEeCCCC-------------eEEEEeCccCceeEEEecccCCceee
Q psy13635 290 MIDFDGNNRRELINENLPHVFGISLL--GDYVYWTDWQRR-------------SIDRVNKITGNDREVIIERSCTGVTR 353 (357)
Q Consensus 290 ~~~~dG~~~~~i~~~~~~~p~gia~~--~~~ly~td~~~~-------------~I~~~~~~~g~~~~~i~~~l~~p~~i 353 (357)
..+........... .-.....+++. +..++......+ .+...+..+++....+.........+
T Consensus 244 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~ 321 (369)
T 3zwl_B 244 LVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTV 321 (369)
T ss_dssp EEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred EEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEE
Confidence 99986554433332 23344555554 345555443322 56666665666655554443333333
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.40 E-value=2.5e-05 Score=71.97 Aligned_cols=253 Identities=10% Similarity=-0.009 Sum_probs=138.2
Q ss_pred EEEEEEccCCEEEEEeCC--CCeEEEEEcCCCCcceeEEEEeCCcCCc-eeEEEEcCCCeEEEEeCCCCEEEEEEcCCCc
Q psy13635 74 AAIDYYYKKSMVCWTDHG--TEMISCCTFDGNNVGSKHNVITNGLITP-DGLAIDWLTEKLYWTDSETNKLEVSSLDGKK 150 (357)
Q Consensus 74 ~~i~~d~~~~~ly~~d~~--~~~I~~~~~~g~~~~~~~~~~~~~~~~p-~glavd~~~~~ly~td~~~~~I~~~~~~g~~ 150 (357)
..+++++++..|+++... ...|+.+++++.. ...+..+.... .++++.+.++.|+++... +.|+++++++..
T Consensus 39 ~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~----~~~l~~~~~~~~~~~~~spdg~~l~~~~~~-~~l~~~d~~~~~ 113 (396)
T 3c5m_A 39 YQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ----AVQLTEGKGDNTFGGFISTDERAFFYVKNE-LNLMKVDLETLE 113 (396)
T ss_dssp TSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE----EEECCCSSCBCTTTCEECTTSSEEEEEETT-TEEEEEETTTCC
T ss_pred ecCcCCCCCCEEEEEEecCCCceEEEEECCCCc----EEEeecCCCCccccceECCCCCEEEEEEcC-CcEEEEECCCCC
Confidence 345678888887766443 3478888888763 33333332222 236788888888777653 479999988776
Q ss_pred eEEEEecCCC-Ccc--eeeeeccCcccccCCce-----EEEeCCCCeEEEEe----CCCCeEEEEEcCCCceEEEecCCC
Q psy13635 151 RKVLYWEDID-QPR--AIASYKLPTIEVEHPDG-----VAVDWVARNLYWTD----TGTDRIEVCRLEGTHRKVLVNTDL 218 (357)
Q Consensus 151 ~~~~~~~~~~-~p~--~i~~~~~~~~~~~~p~g-----lavD~~~~~lY~td----~~~~~I~~~~~~g~~~~~~~~~~~ 218 (357)
.+.+...... .|. .++. ... ....+ .++.+.++.+++.. .....|+..++++.....+.. ..
T Consensus 114 ~~~~~~~~~~~~~~g~~l~~----~~~-~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~-~~ 187 (396)
T 3c5m_A 114 EQVIYTVDEEWKGYGTWVAN----SDC-TKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ-DT 187 (396)
T ss_dssp EEEEEECCTTEEEEEEEEEC----TTS-SEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE-ES
T ss_pred cEEEEecccccCCCCCEEEe----ccC-CccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc-CC
Confidence 5555431110 000 0000 000 00000 01112222333222 233477888877655544443 33
Q ss_pred CCceEEEEeC-CCCEEEEEeCCCC---CCeEEEEecCCCceEEEeeCC-CCCceEEEEecCCCEEEEEeC--CCCe--EE
Q psy13635 219 VEPRAITLSP-AHGYLFWSDWNEK---RPKIERSLLNGGERVLLVKDR-LGWPNGITLDVDNEKLYWCDA--KTDK--IE 289 (357)
Q Consensus 219 ~~P~giavd~-~~g~Ly~~d~~~~---~~~I~~~~~dg~~~~~~~~~~-l~~P~giaid~~~~~lY~~d~--~~~~--I~ 289 (357)
.....++++| .+++|+++..... ..+|+.++.++.....+.... ...+..+++.+++.+|+++.. +... |+
T Consensus 188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 267 (396)
T 3c5m_A 188 AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIY 267 (396)
T ss_dssp SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEE
T ss_pred cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEE
Confidence 4567889998 5556777654321 148999999887666554321 224567889877777776632 3334 99
Q ss_pred EEeCCCCCeEEEecCCCCceEEEEE---ECCEEEEEe---------------CCCCeEEEEeCccCcee
Q psy13635 290 MIDFDGNNRRELINENLPHVFGISL---LGDYVYWTD---------------WQRRSIDRVNKITGNDR 340 (357)
Q Consensus 290 ~~~~dG~~~~~i~~~~~~~p~gia~---~~~~ly~td---------------~~~~~I~~~~~~~g~~~ 340 (357)
.+++++...+.+... .... +++ ++..++.+. .....|+.++..+|+..
T Consensus 268 ~~d~~~g~~~~l~~~--~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 333 (396)
T 3c5m_A 268 KANPETLENEEVMVM--PPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ 333 (396)
T ss_dssp EECTTTCCEEEEEEC--CSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC
T ss_pred EEECCCCCeEEeeeC--CCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE
Confidence 999876655544321 1111 444 334444332 13467889988656543
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00077 Score=61.77 Aligned_cols=291 Identities=9% Similarity=-0.018 Sum_probs=158.8
Q ss_pred EEeecCCCCeEEEEEeC-------CcEEEEEcCCCCc----ceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcC
Q psy13635 33 YALSHHVAAQMLLFATS-------KDIRIANLSRPLK----PVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFD 101 (357)
Q Consensus 33 ~~~~~~~~~~~l~~~~~-------~~i~~~~~~~~~~----~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~ 101 (357)
.+++-++...+|+-+.. ..++..+...... ............+++|.+. +.+..+. .++.|+..++.
T Consensus 46 ~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d-~~~l~~s-~dg~v~lWd~~ 123 (357)
T 4g56_B 46 GAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSE-KGILVAS-DSGAVELWEIL 123 (357)
T ss_dssp EEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETT-TEEEEEE-TTSCEEEC---
T ss_pred EEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCC-CCEEEEE-CCCEEEEeecc
Confidence 34444555556655553 2356565533211 1112233445789999985 5655544 45677766665
Q ss_pred CCCcceeEE-EEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCce
Q psy13635 102 GNNVGSKHN-VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDG 180 (357)
Q Consensus 102 g~~~~~~~~-~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~g 180 (357)
......... .....-.....+++.+.++ ..++-...+.|...++........+.. .-.....
T Consensus 124 ~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~sgs~dg~v~iwd~~~~~~~~~~~~----------------h~~~v~~ 186 (357)
T 4g56_B 124 EKESLLVNKFAKYEHDDIVKTLSVFSDGT-QAVSGGKDFSVKVWDLSQKAVLKSYNA----------------HSSEVNC 186 (357)
T ss_dssp -----CCCCEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTTEEEEEECC----------------CSSCEEE
T ss_pred ccceeEEEeeccCCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcC----------------CCCCEEE
Confidence 432110011 1112234568899987544 445555678899888875544333211 1124567
Q ss_pred EEEeCCCCeEEEEeCCCCeEEEEEcCCCceE-EEe-cCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEE
Q psy13635 181 VAVDWVARNLYWTDTGTDRIEVCRLEGTHRK-VLV-NTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLL 258 (357)
Q Consensus 181 lavD~~~~~lY~td~~~~~I~~~~~~g~~~~-~~~-~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~ 258 (357)
+++.+.++.++++....+.|...++...... .+. ......+..++++|.++.++.+-... +.|...++........
T Consensus 187 v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d--~~i~~wd~~~~~~~~~ 264 (357)
T 4g56_B 187 VAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDET--GNVSLVNIKNPDSAQT 264 (357)
T ss_dssp EEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESS--SCEEEEESSCGGGCEE
T ss_pred EEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecc--cceeEEECCCCcEeEE
Confidence 8887767667777777778888877643322 221 11234578899998877666554332 4788888765544444
Q ss_pred eeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEE--CCEEEEEeCCCCeEEEEeC-c
Q psy13635 259 VKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLL--GDYVYWTDWQRRSIDRVNK-I 335 (357)
Q Consensus 259 ~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~--~~~ly~td~~~~~I~~~~~-~ 335 (357)
+........++++.+.++++..+-...+.|...+.+........ ..-....++++. ++.++.+-...++|..-+. .
T Consensus 265 ~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 265 SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 43334456889998766666666556678988888765443333 234456788875 4556666666677766654 2
Q ss_pred cCceeEEEec
Q psy13635 336 TGNDREVIIE 345 (357)
Q Consensus 336 ~g~~~~~i~~ 345 (357)
.++...++..
T Consensus 344 ~~~~~~~i~~ 353 (357)
T 4g56_B 344 EGRTENLIAT 353 (357)
T ss_dssp ----------
T ss_pred CCccccccCC
Confidence 4555555543
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.38 E-value=0.0013 Score=60.00 Aligned_cols=242 Identities=8% Similarity=-0.041 Sum_probs=150.0
Q ss_pred CcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEE-EEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCC
Q psy13635 71 EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHN-VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGK 149 (357)
Q Consensus 71 ~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~ 149 (357)
....+++|.++ +.|. +-..++.|+..+++......... .....-.....+++.+.+ +...+-...+.|...++...
T Consensus 83 ~~v~~~~~s~d-~~l~-~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~~ 159 (344)
T 4gqb_B 83 AGVADLTWVGE-RGIL-VASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQQ 159 (344)
T ss_dssp SCEEEEEEETT-TEEE-EEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTT
T ss_pred CCEEEEEEeCC-CeEE-EEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCC
Confidence 34778999874 5655 44566788888887654211111 222233457889999754 55556666788999998765
Q ss_pred ceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCce-EEEec-CCCCCceEEEEe
Q psy13635 150 KRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHR-KVLVN-TDLVEPRAITLS 227 (357)
Q Consensus 150 ~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~-~~~~~-~~~~~P~giavd 227 (357)
........ --.....+++.+.+..++++....+.|...+...... ..+.. .....+..++++
T Consensus 160 ~~~~~~~~----------------h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (344)
T 4gqb_B 160 VVLSSYRA----------------HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWH 223 (344)
T ss_dssp EEEEEECC----------------CSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEEC
T ss_pred cEEEEEcC----------------cCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeec
Confidence 43322211 1124567888877777888877778898888874433 33221 123457889999
Q ss_pred CCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCC
Q psy13635 228 PAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLP 307 (357)
Q Consensus 228 ~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~ 307 (357)
|.++.++.+-... +.|...++........+........++++.+.+.++..+-...+.|...|........+ ...-.
T Consensus 224 p~~~~~l~sg~~d--g~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~-~~H~~ 300 (344)
T 4gqb_B 224 PQQSEVFVFGDEN--GTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS-QAHRD 300 (344)
T ss_dssp SSCTTEEEEEETT--SEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEE-CCCSS
T ss_pred CCCCcceEEeccC--CcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEE-cCCCC
Confidence 8777777665442 57888887654443333344455689999876666666666677888888866544333 23344
Q ss_pred ceEEEEEE--CCEEEEEeCCCCeEEEEeC
Q psy13635 308 HVFGISLL--GDYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 308 ~p~gia~~--~~~ly~td~~~~~I~~~~~ 334 (357)
...++++. +..++.+-...++|..-+.
T Consensus 301 ~V~~v~~sp~~~~llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 301 FVRDATWSPLNHSLLTTVGWDHQVVHHVV 329 (344)
T ss_dssp CEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred CEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence 56778875 4567766656677765544
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=98.37 E-value=0.0014 Score=60.05 Aligned_cols=185 Identities=12% Similarity=0.006 Sum_probs=121.1
Q ss_pred eEEEEEe-CCcEEEEEcCCCCcceEec--cCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCc--
Q psy13635 42 QMLLFAT-SKDIRIANLSRPLKPVTII--KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGL-- 116 (357)
Q Consensus 42 ~~l~~~~-~~~i~~~~~~~~~~~~~~~--~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~-- 116 (357)
.+++.+. ...|+..|+.+........ .......++++.+.++.++.+-..++.|...++.+.. ...+....
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~ 162 (383)
T 3ei3_B 87 TTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV----IQVFAKTDSW 162 (383)
T ss_dssp TEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE----EEEEECCCCS
T ss_pred CEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc----eEEEeccCCC
Confidence 3444444 4679999998744333332 3566788999998666666676777889999998753 33332221
Q ss_pred -CCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeC
Q psy13635 117 -ITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDT 195 (357)
Q Consensus 117 -~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~ 195 (357)
.....+++.+.+..| ++-...+.|...++++.....+... .....++++.+.+..++++..
T Consensus 163 ~~~v~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~h-----------------~~~v~~~~~~~~~~~~l~s~~ 224 (383)
T 3ei3_B 163 DYWYCCVDVSVSRQML-ATGDSTGRLLLLGLDGHEIFKEKLH-----------------KAKVTHAEFNPRCDWLMATSS 224 (383)
T ss_dssp SCCEEEEEEETTTTEE-EEEETTSEEEEEETTSCEEEEEECS-----------------SSCEEEEEECSSCTTEEEEEE
T ss_pred CCCeEEEEECCCCCEE-EEECCCCCEEEEECCCCEEEEeccC-----------------CCcEEEEEECCCCCCEEEEEe
Confidence 457889999755544 5555678999999977655444311 125678888877764666766
Q ss_pred CCCeEEEEEcCC-----CceEEEecCCCCCceEEEEeC-CCCEEEEEeCCCCCCeEEEEecCCC
Q psy13635 196 GTDRIEVCRLEG-----THRKVLVNTDLVEPRAITLSP-AHGYLFWSDWNEKRPKIERSLLNGG 253 (357)
Q Consensus 196 ~~~~I~~~~~~g-----~~~~~~~~~~~~~P~giavd~-~~g~Ly~~d~~~~~~~I~~~~~dg~ 253 (357)
..+.|...++.. .....+ ........++++| ....|+.+... +.|...++...
T Consensus 225 ~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d---~~i~iwd~~~~ 283 (383)
T 3ei3_B 225 VDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQR---NEIRVYSSYDW 283 (383)
T ss_dssp TTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESS---SEEEEEETTBT
T ss_pred CCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCC---CcEEEEECCCC
Confidence 678899888874 222223 2345788999998 65556555543 57888887643
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=0.0013 Score=66.27 Aligned_cols=267 Identities=11% Similarity=0.078 Sum_probs=154.8
Q ss_pred cEEEEEcCCCCcceEeccC-----C-CcEEEEEEEccCCEEEEEeCCCC----eEEEEEcCCCCcceeEEEEeCCcCCce
Q psy13635 51 DIRIANLSRPLKPVTIIKD-----L-EEGAAIDYYYKKSMVCWTDHGTE----MISCCTFDGNNVGSKHNVITNGLITPD 120 (357)
Q Consensus 51 ~i~~~~~~~~~~~~~~~~~-----~-~~~~~i~~d~~~~~ly~~d~~~~----~I~~~~~~g~~~~~~~~~~~~~~~~p~ 120 (357)
.|++.+..++....++-.+ . ....+++++|++..|.++....+ .|+..++++... ........ ...
T Consensus 99 ~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~---~~~~~~~~-~~~ 174 (710)
T 2xdw_A 99 VLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKE---LPDVLERV-KFS 174 (710)
T ss_dssp EEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEE---EEEEEEEE-CSC
T ss_pred EEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC---CcccccCc-ccc
Confidence 4677776553322222111 1 13567899998888876644322 799999988741 22111111 256
Q ss_pred eEEEEcCCCeEEEEeCCC---------------CEEEEEEcCCCceE-EEEecCCCCcceeeeeccCcccccCCceEEEe
Q psy13635 121 GLAIDWLTEKLYWTDSET---------------NKLEVSSLDGKKRK-VLYWEDIDQPRAIASYKLPTIEVEHPDGVAVD 184 (357)
Q Consensus 121 glavd~~~~~ly~td~~~---------------~~I~~~~~~g~~~~-~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD 184 (357)
++++.+.++.||++.... .+|++.++.+...+ .++...-.. -....++++.
T Consensus 175 ~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~-------------~~~~~~~~~S 241 (710)
T 2xdw_A 175 CMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDE-------------PKWMGGAELS 241 (710)
T ss_dssp CEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTC-------------TTCEEEEEEC
T ss_pred eEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCC-------------CeEEEEEEEc
Confidence 788888888898876432 35888888654321 222111100 0123477888
Q ss_pred CCCCeEEEEeC-C---CCeEEEEEcCC------C--ceEEEecCCCCCceEEEEeCCCCEEEEEeCCCC-CCeEEEEecC
Q psy13635 185 WVARNLYWTDT-G---TDRIEVCRLEG------T--HRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEK-RPKIERSLLN 251 (357)
Q Consensus 185 ~~~~~lY~td~-~---~~~I~~~~~~g------~--~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~-~~~I~~~~~d 251 (357)
+.++.|+++.. . ...|+..++++ . ....+.... . ...-.+++.++.||+...... +.+|+.++++
T Consensus 242 pDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~-~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~ 319 (710)
T 2xdw_A 242 DDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNF-E-GEYDYVTNEGTVFTFKTNRHSPNYRLINIDFT 319 (710)
T ss_dssp TTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSS-S-SCEEEEEEETTEEEEEECTTCTTCEEEEEETT
T ss_pred CCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCC-C-cEEEEEeccCCEEEEEECCCCCCCEEEEEeCC
Confidence 88888877653 2 45899999875 2 234443322 1 122246666788888765422 4689999998
Q ss_pred CCc---eEEEeeCCC-CCceEEEEecCCCEEEEEeCCC--CeEEEEeC-CCCCeEEEecCCCCceEEEEEE--CCEEEEE
Q psy13635 252 GGE---RVLLVKDRL-GWPNGITLDVDNEKLYWCDAKT--DKIEMIDF-DGNNRRELINENLPHVFGISLL--GDYVYWT 322 (357)
Q Consensus 252 g~~---~~~~~~~~l-~~P~giaid~~~~~lY~~d~~~--~~I~~~~~-dG~~~~~i~~~~~~~p~gia~~--~~~ly~t 322 (357)
+.. .+.++...- ....++++. .+++|+++.... .+|+.+++ +|...+.+.. ......+++.. ++.++++
T Consensus 320 ~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~-~~~~v~~~~~s~d~~~l~~~ 397 (710)
T 2xdw_A 320 DPEESKWKVLVPEHEKDVLEWVACV-RSNFLVLCYLHDVKNTLQLHDLATGALLKIFPL-EVGSVVGYSGQKKDTEIFYQ 397 (710)
T ss_dssp SCCGGGCEEEECCCSSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETTTCCEEEEECC-CSSEEEEEECCTTCSEEEEE
T ss_pred CCCcccceeccCCCCCCeEEEEEEE-cCCEEEEEEEECCEEEEEEEECCCCCEEEecCC-CCceEEEEecCCCCCEEEEE
Confidence 764 245543321 235567775 478888776544 46888888 6664444432 23344555553 3466654
Q ss_pred --eC-CCCeEEEEeCccCc
Q psy13635 323 --DW-QRRSIDRVNKITGN 338 (357)
Q Consensus 323 --d~-~~~~I~~~~~~~g~ 338 (357)
+. ..++|+.++..+|+
T Consensus 398 ~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 398 FTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EECSSCCCEEEEEETTSSS
T ss_pred EeCCCCCCEEEEEECCCCc
Confidence 22 23678888886666
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=98.37 E-value=0.0013 Score=60.61 Aligned_cols=285 Identities=8% Similarity=0.000 Sum_probs=163.6
Q ss_pred EeecCCCCeEEEEEe-CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcc----ee
Q psy13635 34 ALSHHVAAQMLLFAT-SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVG----SK 108 (357)
Q Consensus 34 ~~~~~~~~~~l~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~----~~ 108 (357)
++.-++...+|+-+. +..|+..|+........+.........++|++.+..| .+-..++.+...++...... ..
T Consensus 71 ~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-as~~~d~~v~iw~~~~~~~~~~~~~~ 149 (380)
T 3iz6_a 71 SLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSV-ACGGLDSACSIFNLSSQADRDGNMPV 149 (380)
T ss_dssp EEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEE-EECCSSSCCEEEECCCCSSCCCSSTT
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEE-EEeeCCCcEEEEECCCCccccCCccc
Confidence 333344555555555 4568888987644444444445567788898865554 45455566666666432100 00
Q ss_pred EEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCC
Q psy13635 109 HNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVAR 188 (357)
Q Consensus 109 ~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~ 188 (357)
...+...-.....+++.+..+..+++-+..+.|...++.............. .........+++.+.++
T Consensus 150 ~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~-----------~~h~~~v~~~~~~~~~~ 218 (380)
T 3iz6_a 150 SRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFP-----------SGHTADVLSLSINSLNA 218 (380)
T ss_dssp CCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSS-----------SSCCSCEEEEEECSSSC
T ss_pred eeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccC-----------CCCccCeEEEEeecCCC
Confidence 1112222233455666665566667777788899888865544333321110 11112445677776677
Q ss_pred eEEEEeCCCCeEEEEEcC-CCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCC-----
Q psy13635 189 NLYWTDTGTDRIEVCRLE-GTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDR----- 262 (357)
Q Consensus 189 ~lY~td~~~~~I~~~~~~-g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~----- 262 (357)
.++++....+.|...++. +................++++|.... +.+-... +.|...++........+...
T Consensus 219 ~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-l~s~s~D--~~i~lwd~~~~~~~~~~~~~~~~~~ 295 (380)
T 3iz6_a 219 NMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQR-FGTGSDD--GTCRLFDMRTGHQLQVYNREPDRND 295 (380)
T ss_dssp CEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSE-EEEECSS--SCEEEEETTTTEEEEEECCCCSSSC
T ss_pred CEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCe-EEEEcCC--CeEEEEECCCCcEEEEecccccccc
Confidence 888888888889998876 32222223334456789999986444 4444442 57888887765544443221
Q ss_pred --CCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEec----CCCCceEEEEEE-CCEEEEEeCCCCeEEEEeC
Q psy13635 263 --LGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELIN----ENLPHVFGISLL-GDYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 263 --l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~----~~~~~p~gia~~-~~~ly~td~~~~~I~~~~~ 334 (357)
......+++.+. +++.++-...+.|...+.........+. ........+++. ++...++-...+.|..-+.
T Consensus 296 ~~~~~v~~~~~s~~-g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 296 NELPIVTSVAFSIS-GRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAF 373 (380)
T ss_dssp CSSCSCSEEEECSS-SSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEEC
T ss_pred cccCceEEEEECCC-CCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEec
Confidence 123578999854 5555566667889999875444322221 122334667776 3556666666677776665
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00044 Score=62.08 Aligned_cols=249 Identities=11% Similarity=-0.045 Sum_probs=144.9
Q ss_pred CCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCC-eEEEEeCCCCEEEEEEc-C
Q psy13635 70 LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTE-KLYWTDSETNKLEVSSL-D 147 (357)
Q Consensus 70 ~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~-~ly~td~~~~~I~~~~~-~ 147 (357)
-....++++++.+..|+.+. .++.|+..+++..............-..+..+++.+.++ .|+.+ ...+.|...++ .
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~~wd~~~ 88 (342)
T 1yfq_A 11 KDYISDIKIIPSKSLLLITS-WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVG-TVQGEILKVDLIG 88 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEE-TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEE-ETTSCEEEECSSS
T ss_pred CCcEEEEEEcCCCCEEEEEc-CCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEE-cCCCeEEEEEecc
Confidence 34678899998766666554 557777777765531011222223345678899997655 45544 45788999998 7
Q ss_pred CCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCC---------CceEEEecCCC
Q psy13635 148 GKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEG---------THRKVLVNTDL 218 (357)
Q Consensus 148 g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g---------~~~~~~~~~~~ 218 (357)
+.....+.... .-.....+++.+ ++ ++++....+.|...++.. ........ .-
T Consensus 89 ~~~~~~~~~~~---------------~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~ 150 (342)
T 1yfq_A 89 SPSFQALTNNE---------------ANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VK 150 (342)
T ss_dssp SSSEEECBSCC---------------CCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SC
T ss_pred CCceEeccccC---------------CCCceEEEEeCC-CC-EEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eC
Confidence 66543331100 112456888887 44 444555567888887653 21111111 23
Q ss_pred CCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCC-Cc--eEEEeeCCCCCceEEEEec-CCCEEEEEeCCCCeEEEEeCC
Q psy13635 219 VEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNG-GE--RVLLVKDRLGWPNGITLDV-DNEKLYWCDAKTDKIEMIDFD 294 (357)
Q Consensus 219 ~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg-~~--~~~~~~~~l~~P~giaid~-~~~~lY~~d~~~~~I~~~~~d 294 (357)
..+..+++++. + ++.+... +.|...++.. .. ........-..+..+++.+ .+..++ +-...+.|...+.+
T Consensus 151 ~~v~~~~~~~~-~-l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~-~~~~dg~i~i~~~~ 224 (342)
T 1yfq_A 151 NKIFTMDTNSS-R-LIVGMNN---SQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYA-CSSIDGRVAVEFFD 224 (342)
T ss_dssp CCEEEEEECSS-E-EEEEEST---TEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEE-EEETTSEEEEEECC
T ss_pred CceEEEEecCC-c-EEEEeCC---CeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEE-EEecCCcEEEEEEc
Confidence 46788999864 3 6666544 5888888876 32 2223223334578899986 555444 44456778776665
Q ss_pred CC------CeEEEecCCC---------CceEEEEEE-CCEEEEEeCCCCeEEEEeCccCceeEEEe
Q psy13635 295 GN------NRRELINENL---------PHVFGISLL-GDYVYWTDWQRRSIDRVNKITGNDREVII 344 (357)
Q Consensus 295 G~------~~~~i~~~~~---------~~p~gia~~-~~~ly~td~~~~~I~~~~~~~g~~~~~i~ 344 (357)
.. .....+.... .....+++. .+.+.++-...+.|...+..+++....+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 290 (342)
T 1yfq_A 225 DQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA 290 (342)
T ss_dssp TTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred CCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhh
Confidence 43 2222222221 155677776 35545555566888888887777655543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.36 E-value=0.001 Score=59.84 Aligned_cols=280 Identities=6% Similarity=-0.086 Sum_probs=154.5
Q ss_pred EeecCCCCeEEEEEe-----CCcEEEEEcCCCCcceE-eccCCCcEEEEEEEccC--CEEEEEeCCCCeEEEEEcCCCCc
Q psy13635 34 ALSHHVAAQMLLFAT-----SKDIRIANLSRPLKPVT-IIKDLEEGAAIDYYYKK--SMVCWTDHGTEMISCCTFDGNNV 105 (357)
Q Consensus 34 ~~~~~~~~~~l~~~~-----~~~i~~~~~~~~~~~~~-~~~~~~~~~~i~~d~~~--~~ly~~d~~~~~I~~~~~~g~~~ 105 (357)
++.-++..+.++.+. ...|+..++.+...... .........++++.+.. +.++++...++.|...++....
T Consensus 23 ~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~- 101 (357)
T 3i2n_A 23 DCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE- 101 (357)
T ss_dssp EEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS-
T ss_pred EEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC-
Confidence 444455555555555 45688888876432222 22455678899998873 4555565667788888887653
Q ss_pred ceeEEEEeCCcCCceeEEE------EcCCCeEEEEeCCCCEEEEEEcCCCc--eEEEEecCCCCcceeeeeccCcccccC
Q psy13635 106 GSKHNVITNGLITPDGLAI------DWLTEKLYWTDSETNKLEVSSLDGKK--RKVLYWEDIDQPRAIASYKLPTIEVEH 177 (357)
Q Consensus 106 ~~~~~~~~~~~~~p~glav------d~~~~~ly~td~~~~~I~~~~~~g~~--~~~~~~~~~~~p~~i~~~~~~~~~~~~ 177 (357)
.....+...-.....+++ .+ ++..+++-...+.|...++.... ...+.... . ..-..
T Consensus 102 -~~~~~~~~~~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~------------~~~~~ 166 (357)
T 3i2n_A 102 -MPVYSVKGHKEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQ-G------------ENKRD 166 (357)
T ss_dssp -SCSEEECCCSSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCSEEECCCT-T------------SCCCC
T ss_pred -ccEEEEEecccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCcceeccccC-C------------CCCCc
Confidence 113333333344556643 33 34455555567888888886543 22221100 0 00112
Q ss_pred CceEE----EeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeC---CCCEEEEEeCCCCCCeEEEEec
Q psy13635 178 PDGVA----VDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSP---AHGYLFWSDWNEKRPKIERSLL 250 (357)
Q Consensus 178 p~gla----vD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~---~~g~Ly~~d~~~~~~~I~~~~~ 250 (357)
...++ +.+ .+.++++....+.|...++.......... .......++++| ....|+.+... +.|...++
T Consensus 167 v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~ 241 (357)
T 3i2n_A 167 CWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALRWETN-IKNGVCSLEFDRKDISMNKLVATSLE---GKFHVFDM 241 (357)
T ss_dssp EEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEESCSSSSCCEEEEEEST---TEEEEEEE
T ss_pred eEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCceeeecC-CCCceEEEEcCCCCCCCCEEEEECCC---CeEEEEeC
Confidence 33444 333 34455555556789999988765543332 345688999998 65666666544 47766665
Q ss_pred CCCceE-E----EeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCe-------------------EEEecCCC
Q psy13635 251 NGGERV-L----LVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNR-------------------RELINENL 306 (357)
Q Consensus 251 dg~~~~-~----~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~-------------------~~i~~~~~ 306 (357)
...... . ...........+++.+.+..++++-...+.|...+...... ........
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 321 (357)
T 3i2n_A 242 RTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLST 321 (357)
T ss_dssp EEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCS
T ss_pred cCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCC
Confidence 432211 1 11133455688999865543666666677887777643211 11111223
Q ss_pred CceEEEEEE--CCEEEEEeCCCCeEEEEeC
Q psy13635 307 PHVFGISLL--GDYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 307 ~~p~gia~~--~~~ly~td~~~~~I~~~~~ 334 (357)
....++++. +..+.++-...+.|...+.
T Consensus 322 ~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~ 351 (357)
T 3i2n_A 322 QPISSLDWSPDKRGLCVCSSFDQTVRVLIV 351 (357)
T ss_dssp SCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred CCeeEEEEcCCCCeEEEEecCCCcEEEEEC
Confidence 345667775 2345545556677766665
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.9e-05 Score=69.88 Aligned_cols=256 Identities=11% Similarity=0.119 Sum_probs=148.6
Q ss_pred EEEEEe-CCcEEEEEcCCCCcceEeccCC-CcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCce
Q psy13635 43 MLLFAT-SKDIRIANLSRPLKPVTIIKDL-EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPD 120 (357)
Q Consensus 43 ~l~~~~-~~~i~~~~~~~~~~~~~~~~~~-~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~ 120 (357)
.++++. ...|.++|.++ +........ ....++..+. ++.||++... |++++.+|.... .. ........
T Consensus 32 ~l~v~t~~~~l~~~d~~g--~~~~~~~~~~~~~~~~~~~~-~g~l~v~t~~---l~~~d~~g~~~~---~~-~~~~~~~~ 101 (330)
T 3hxj_A 32 TIYLGSSNKNLYAINTDG--SVKWFFKSGEIIECRPSIGK-DGTIYFGSDK---VYAINPDGTEKW---RF-DTKKAIVS 101 (330)
T ss_dssp CEECSSTTTTTEEECTTS--CEEESSCGGGEEEECCEETT-TTEECCSSCE---EEEECCCGGGGG---GS-CC-----C
T ss_pred eEEEEcCCCEEEEECCCC--cEEEEEecCCCcccceEEec-CCcEEEecCc---EEEECCCCcEEE---EE-ECCCCccc
Confidence 355544 45688888333 222222211 1223455543 6788875433 888887655311 10 00111123
Q ss_pred eEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeE
Q psy13635 121 GLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRI 200 (357)
Q Consensus 121 glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I 200 (357)
..+++ ++.||+.. ..+.|.+++.+|...-... .. . .....+++| .++.||+... .+.|
T Consensus 102 ~~~~~--~~~l~v~t-~~~~l~~~d~~g~~~~~~~-~~-------------~---~~~~~~~~~-~~g~l~vgt~-~~~l 159 (330)
T 3hxj_A 102 DFTIF--EDILYVTS-MDGHLYAINTDGTEKWRFK-TK-------------K---AIYATPIVS-EDGTIYVGSN-DNYL 159 (330)
T ss_dssp CEEEE--TTEEEEEC-TTSEEEEECTTSCEEEEEE-CS-------------S---CCCSCCEEC-TTSCEEEECT-TSEE
T ss_pred CceEE--CCEEEEEe-cCCEEEEEcCCCCEEEEEc-CC-------------C---ceeeeeEEc-CCCEEEEEcC-CCEE
Confidence 34555 77787765 3578999998855332221 11 0 123445666 4667887654 4689
Q ss_pred EEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEE
Q psy13635 201 EVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYW 280 (357)
Q Consensus 201 ~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~ 280 (357)
..++.+|+....... .......+++|+ +|.||++. + .|.+.+.+|....... .....+.++++| .++.||+
T Consensus 160 ~~~d~~g~~~~~~~~-~~~~~~~~~~d~-~g~l~v~t-~----~l~~~d~~g~~~~~~~-~~~~~~~~~~~~-~~g~l~v 230 (330)
T 3hxj_A 160 YAINPDGTEKWRFKT-NDAITSAASIGK-DGTIYFGS-D----KVYAINPDGTEKWNFY-AGYWTVTRPAIS-EDGTIYV 230 (330)
T ss_dssp EEECTTSCEEEEEEC-SSCCCSCCEECT-TCCEEEES-S----SEEEECTTSCEEEEEC-CSSCCCSCCEEC-TTSCEEE
T ss_pred EEECCCCCEeEEEec-CCCceeeeEEcC-CCEEEEEe-C----EEEEECCCCcEEEEEc-cCCcceeceEEC-CCCeEEE
Confidence 999988655433332 223456677875 58899887 3 7888886665444332 222446778887 5779998
Q ss_pred EeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEE-CCEEEEEeCCCCeEEEEeCccCceeEEE
Q psy13635 281 CDAKTDKIEMIDFDGNNRRELINENLPHVFGISLL-GDYVYWTDWQRRSIDRVNKITGNDREVI 343 (357)
Q Consensus 281 ~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~-~~~ly~td~~~~~I~~~~~~~g~~~~~i 343 (357)
+.. .+.+.+++.+|........ ....+..+.++ ++.||+... .+.|+++++ +|+.....
T Consensus 231 ~t~-~~gl~~~~~~g~~~~~~~~-~~~~~~~~~~~~~g~l~v~t~-~ggl~~~d~-~g~~~~~~ 290 (330)
T 3hxj_A 231 TSL-DGHLYAINPDGTEKWRFKT-GKRIESSPVIGNTDTIYFGSY-DGHLYAINP-DGTEKWNF 290 (330)
T ss_dssp EET-TTEEEEECTTSCEEEEEEC-SSCCCSCCEECTTSCEEEECT-TCEEEEECT-TSCEEEEE
T ss_pred EcC-CCeEEEECCCCCEeEEeeC-CCCccccceEcCCCeEEEecC-CCCEEEECC-CCcEEEEE
Confidence 875 4688888887765544332 22233446667 688888764 468999997 77765544
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=98.35 E-value=0.0013 Score=58.51 Aligned_cols=259 Identities=8% Similarity=-0.021 Sum_probs=154.8
Q ss_pred CCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCC
Q psy13635 70 LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGK 149 (357)
Q Consensus 70 ~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~ 149 (357)
.....+++|+|.+..|. +-..++.|...++.... ....+...-.....+++.+.++ +.++-...+.|...++...
T Consensus 13 ~~~V~~~~fsp~~~~l~-s~~~dg~v~lWd~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~s~s~d~~i~vwd~~~~ 87 (304)
T 2ynn_A 13 SDRVKGIDFHPTEPWVL-TTLYSGRVELWNYETQV---EVRSIQVTETPVRAGKFIARKN-WIIVGSDDFRIRVFNYNTG 87 (304)
T ss_dssp CSCEEEEEECSSSSEEE-EEETTSEEEEEETTTTE---EEEEEECCSSCEEEEEEEGGGT-EEEEEETTSEEEEEETTTC
T ss_pred CCceEEEEECCCCCEEE-EEcCCCcEEEEECCCCc---eeEEeeccCCcEEEEEEeCCCC-EEEEECCCCEEEEEECCCC
Confidence 34678899998666555 44466788888887653 2333333334567788887554 4555556789999998654
Q ss_pred ceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCC-ceEEEecCCCCCceEEEEeC
Q psy13635 150 KRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGT-HRKVLVNTDLVEPRAITLSP 228 (357)
Q Consensus 150 ~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~-~~~~~~~~~~~~P~giavd~ 228 (357)
.....+... -.....+++.+.+..| ++-...+.|..-+.... ...............++++|
T Consensus 88 ~~~~~~~~h----------------~~~v~~~~~~~~~~~l-~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p 150 (304)
T 2ynn_A 88 EKVVDFEAH----------------PDYIRSIAVHPTKPYV-LSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP 150 (304)
T ss_dssp CEEEEEECC----------------SSCEEEEEECSSSSEE-EEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECT
T ss_pred cEEEEEeCC----------------CCcEEEEEEcCCCCEE-EEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECC
Confidence 433222111 1245678888765544 46666678888887654 33333433445678999998
Q ss_pred CCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCC-CCCceEEEEecC-CCEEEEEeCCCCeEEEEeCCCCCeEEEecCCC
Q psy13635 229 AHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDR-LGWPNGITLDVD-NEKLYWCDAKTDKIEMIDFDGNNRRELINENL 306 (357)
Q Consensus 229 ~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~-l~~P~giaid~~-~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~ 306 (357)
.++.++.+-... +.|...++............ ......+++.+. ++.+.++-...+.|...+.........+....
T Consensus 151 ~~~~~l~sgs~D--~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~ 228 (304)
T 2ynn_A 151 KDPSTFASGCLD--RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM 228 (304)
T ss_dssp TCTTEEEEEETT--SEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred CCCCEEEEEeCC--CeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCC
Confidence 655555554442 47777777544332222222 223345565432 44455565667788888886554433343344
Q ss_pred CceEEEEEE-CCEEEEEeCCCCeEEEEeCccCceeEEEecccCCcee
Q psy13635 307 PHVFGISLL-GDYVYWTDWQRRSIDRVNKITGNDREVIIERSCTGVT 352 (357)
Q Consensus 307 ~~p~gia~~-~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~ 352 (357)
.....+++. .+.+..+-...+.|...+..+++....+..+......
T Consensus 229 ~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~ 275 (304)
T 2ynn_A 229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWC 275 (304)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEE
T ss_pred CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEE
Confidence 455666665 3455666666788888887777777766555444333
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=98.34 E-value=0.0003 Score=70.58 Aligned_cols=246 Identities=11% Similarity=0.053 Sum_probs=136.2
Q ss_pred EeecCCCCeEEEEEeC----------CcEEEEEcCCCCcceEeccCCC---cEEEEEEEccCCEEEEEeCCCCeEEEEEc
Q psy13635 34 ALSHHVAAQMLLFATS----------KDIRIANLSRPLKPVTIIKDLE---EGAAIDYYYKKSMVCWTDHGTEMISCCTF 100 (357)
Q Consensus 34 ~~~~~~~~~~l~~~~~----------~~i~~~~~~~~~~~~~~~~~~~---~~~~i~~d~~~~~ly~~d~~~~~I~~~~~ 100 (357)
+++-++...+|+++.. ..++..|++++.. ..+..... .+..++++|++..|.++.. +.|+..++
T Consensus 65 ~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~--~~i~~~~~ 141 (723)
T 1xfd_A 65 RYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE--NNIYYCAH 141 (723)
T ss_dssp EEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET--TEEEEESS
T ss_pred eEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC--CeEEEEEC
Confidence 3445556667777764 5688899877433 33322111 2566788998888877664 57999888
Q ss_pred CCCCcceeEEEEeCCcC------------------CceeEEEEcCCCeEEEEeCCCC-----------------------
Q psy13635 101 DGNNVGSKHNVITNGLI------------------TPDGLAIDWLTEKLYWTDSETN----------------------- 139 (357)
Q Consensus 101 ~g~~~~~~~~~~~~~~~------------------~p~glavd~~~~~ly~td~~~~----------------------- 139 (357)
++.. ...+...+.. .+.++++.+.++.|+++.....
T Consensus 142 ~~g~---~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (723)
T 1xfd_A 142 VGKQ---AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHY 218 (723)
T ss_dssp SSSC---CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEEC
T ss_pred CCCc---eEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccC
Confidence 8764 1333322221 2368999988888877653221
Q ss_pred ----------EEEEEEcCCCce-EEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEE-EeCCC--CeEEEEEc
Q psy13635 140 ----------KLEVSSLDGKKR-KVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYW-TDTGT--DRIEVCRL 205 (357)
Q Consensus 140 ----------~I~~~~~~g~~~-~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~-td~~~--~~I~~~~~ 205 (357)
+|...++.+... ..+. .. ..+ .........+++.+.+..|+. ++... ..|...++
T Consensus 219 ~~~G~~~~~~~l~~~d~~~~~~~~~l~-~~-~~~---------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~ 287 (723)
T 1xfd_A 219 PKAGSENPSISLHVIGLNGPTHDLEMM-PP-DDP---------RMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDA 287 (723)
T ss_dssp CBTTSCCCEEEEEEEESSSSCCCEECC-CC-CCG---------GGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEET
T ss_pred CCCCCCCCeeEEEEEECCCCceeEEee-CC-ccC---------CCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeC
Confidence 344444433321 1110 00 000 000112345777766655533 34332 36888888
Q ss_pred CCCceEEEecC---CCCC--ceEEEEeCCCCEEEEE-eCCCC----CCeEEEEe-cCCCc---eEEEeeCCCCCceEEEE
Q psy13635 206 EGTHRKVLVNT---DLVE--PRAITLSPAHGYLFWS-DWNEK----RPKIERSL-LNGGE---RVLLVKDRLGWPNGITL 271 (357)
Q Consensus 206 ~g~~~~~~~~~---~~~~--P~giavd~~~g~Ly~~-d~~~~----~~~I~~~~-~dg~~---~~~~~~~~l~~P~giai 271 (357)
++.....+... .... +..++++|.+..|+++ ..... ..+|+..+ .++.. ...+..........+++
T Consensus 288 ~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~ 367 (723)
T 1xfd_A 288 TTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAY 367 (723)
T ss_dssp TTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEE
T ss_pred CCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEE
Confidence 76554444321 1111 2478899986677775 33211 13788888 55554 33332222222233689
Q ss_pred ecCCCEEEEEeCC----CCeEEEEeCCCC
Q psy13635 272 DVDNEKLYWCDAK----TDKIEMIDFDGN 296 (357)
Q Consensus 272 d~~~~~lY~~d~~----~~~I~~~~~dG~ 296 (357)
+++++.||++... ...++.++.+|.
T Consensus 368 spdg~~l~~~~~~~~~~~~~l~~~~~~~~ 396 (723)
T 1xfd_A 368 DEKGNKIYFLSTEDLPRRRQLYSANTVGN 396 (723)
T ss_dssp ETTTTEEEEEESSSCTTCCEEEEECSSTT
T ss_pred cCCCCEEEEEEcCCCCcceEEEEEeCCCC
Confidence 9889999887543 456888888775
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=98.33 E-value=0.0017 Score=58.85 Aligned_cols=242 Identities=10% Similarity=0.071 Sum_probs=143.4
Q ss_pred cEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCce
Q psy13635 72 EGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKR 151 (357)
Q Consensus 72 ~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~ 151 (357)
...++++++.+..|+ +...++.|+..++++... +....+...-..+.++++.+.++.|+ +-...+.|...++.....
T Consensus 10 ~i~~~~~s~~~~~l~-~~~~d~~v~i~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~ 86 (372)
T 1k8k_C 10 PISCHAWNKDRTQIA-ICPNNHEVHIYEKSGNKW-VQVHELKEHNGQVTGVDWAPDSNRIV-TCGTDRNAYVWTLKGRTW 86 (372)
T ss_dssp CCCEEEECTTSSEEE-EECSSSEEEEEEEETTEE-EEEEEEECCSSCEEEEEEETTTTEEE-EEETTSCEEEEEEETTEE
T ss_pred CeEEEEECCCCCEEE-EEeCCCEEEEEeCCCCcE-EeeeeecCCCCcccEEEEeCCCCEEE-EEcCCCeEEEEECCCCee
Confidence 466788887655554 444567888888876620 02334444445678999998555554 444567888888765542
Q ss_pred EEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCc----eEEEecCCCCCceEEEEe
Q psy13635 152 KVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTH----RKVLVNTDLVEPRAITLS 227 (357)
Q Consensus 152 ~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~----~~~~~~~~~~~P~giavd 227 (357)
...... ...-..+..+++.+.+..|+.+. ..+.|...+.+... ...+..........++++
T Consensus 87 ~~~~~~--------------~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 151 (372)
T 1k8k_C 87 KPTLVI--------------LRINRAARCVRWAPNEKKFAVGS-GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH 151 (372)
T ss_dssp EEEEEC--------------CCCSSCEEEEEECTTSSEEEEEE-TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEEC
T ss_pred eeeEEe--------------ecCCCceeEEEECCCCCEEEEEe-CCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEc
Confidence 222110 01112467788887666666554 44677777766543 223323334568899999
Q ss_pred CCCCEEEEEeCCCCCCeEEEEecC------------------CCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEE
Q psy13635 228 PAHGYLFWSDWNEKRPKIERSLLN------------------GGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIE 289 (357)
Q Consensus 228 ~~~g~Ly~~d~~~~~~~I~~~~~d------------------g~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~ 289 (357)
|....|+.+... +.|...++. .......+...-....++++++.+..|+.+. ..+.|.
T Consensus 152 ~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~ 227 (372)
T 1k8k_C 152 PNSVLLAAGSCD---FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS-HDSTVC 227 (372)
T ss_dssp TTSSEEEEEETT---SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE-TTTEEE
T ss_pred CCCCEEEEEcCC---CCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe-CCCEEE
Confidence 876566665544 466666642 1222222223334578999986665655554 567899
Q ss_pred EEeCCCCCeEEEecCCCCceEEEEEE-CCEEEEEeCCCCeEEEEeCcc
Q psy13635 290 MIDFDGNNRRELINENLPHVFGISLL-GDYVYWTDWQRRSIDRVNKIT 336 (357)
Q Consensus 290 ~~~~dG~~~~~i~~~~~~~p~gia~~-~~~ly~td~~~~~I~~~~~~~ 336 (357)
..+.........+.........+++. ++.++.+. ..+.|...+..+
T Consensus 228 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 228 LADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred EEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 99985444333333334456778887 56666665 566776666544
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=98.32 E-value=0.0013 Score=60.39 Aligned_cols=255 Identities=9% Similarity=-0.054 Sum_probs=148.3
Q ss_pred CCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCc---ceeEEEEeCCcCCceeEEEEcC---CC---eEEEEeCCCCE
Q psy13635 70 LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNV---GSKHNVITNGLITPDGLAIDWL---TE---KLYWTDSETNK 140 (357)
Q Consensus 70 ~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~---~~~~~~~~~~~~~p~glavd~~---~~---~ly~td~~~~~ 140 (357)
-....++++++ + ++++...++.|+..+++.... ......+...-.....+++.+. .+ .++++-...+.
T Consensus 16 ~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~ 92 (397)
T 1sq9_A 16 DADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGD 92 (397)
T ss_dssp SSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSC
T ss_pred hcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCC
Confidence 34677888876 3 555555677888888876630 0013333333445788899875 14 55555555778
Q ss_pred EEEEEcCCCce-----EEEEecCCCCcceeeeeccCcccccCCceEEEe----CCCCe-EEEEeCCCCeEEEEEcCC---
Q psy13635 141 LEVSSLDGKKR-----KVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVD----WVARN-LYWTDTGTDRIEVCRLEG--- 207 (357)
Q Consensus 141 I~~~~~~g~~~-----~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD----~~~~~-lY~td~~~~~I~~~~~~g--- 207 (357)
|...++..... ..... .... ...-.....+++. +.+.. |+.+ ...+.|...++..
T Consensus 93 i~iw~~~~~~~~~~~~~~~~~-~~~~----------~~~~~~v~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 93 LLFYRITREDETKKVIFEKLD-LLDS----------DMKKHSFWALKWGASNDRLLSHRLVAT-DVKGTTYIWKFHPFAD 160 (397)
T ss_dssp EEEEEEEECTTTCCEEEEEEC-CSCT----------TGGGSCEEEEEEECCC----CEEEEEE-ETTSCEEEEEEESSSS
T ss_pred EEEEEccCCcccccccceeec-cccc----------ccCCCcEEEEEEeeccCCCCceEEEEE-eCCCcEEEEeCCcccc
Confidence 88888765442 11111 0000 0001356778888 76666 5544 4456777777654
Q ss_pred ----CceE-----EEe------cCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeC---C---CCCc
Q psy13635 208 ----THRK-----VLV------NTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKD---R---LGWP 266 (357)
Q Consensus 208 ----~~~~-----~~~------~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~---~---l~~P 266 (357)
.... .+. ......+..++++|.. ++++-.. .+.|...++........+.. . -...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i 236 (397)
T 1sq9_A 161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFN--NGTVQISELSTLRPLYNFESQHSMINNSNSI 236 (397)
T ss_dssp HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECT--TSEEEEEETTTTEEEEEEECCC---CCCCCE
T ss_pred ccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeC--CCcEEEEECCCCceeEEEeccccccccCCcc
Confidence 2222 332 2234567899999864 4444433 26898888876555444443 2 4567
Q ss_pred eEEEEecCCCEEEEEeCCC---CeEEEEeCCCCCeEEEecC-------------CCCceEEEEEE-CCEEEEEeCCCCeE
Q psy13635 267 NGITLDVDNEKLYWCDAKT---DKIEMIDFDGNNRRELINE-------------NLPHVFGISLL-GDYVYWTDWQRRSI 329 (357)
Q Consensus 267 ~giaid~~~~~lY~~d~~~---~~I~~~~~dG~~~~~i~~~-------------~~~~p~gia~~-~~~ly~td~~~~~I 329 (357)
..+++++.+..|+.+. .. +.|...+.........+.. .......+++. ++..+++-...+.|
T Consensus 237 ~~i~~~~~~~~l~~~~-~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 315 (397)
T 1sq9_A 237 RSVKFSPQGSLLAIAH-DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL 315 (397)
T ss_dssp EEEEECSSTTEEEEEE-EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred ceEEECCCCCEEEEEe-cCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeE
Confidence 8999987666555544 34 7899999865443333332 33455777776 34455555567889
Q ss_pred EEEeCccCceeEEEe
Q psy13635 330 DRVNKITGNDREVII 344 (357)
Q Consensus 330 ~~~~~~~g~~~~~i~ 344 (357)
...+..+++....+.
T Consensus 316 ~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 316 RFWDVKTKERITTLN 330 (397)
T ss_dssp EEEETTTTEEEEEEE
T ss_pred EEEEcCCCceeEEEe
Confidence 888887787777666
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=98.30 E-value=0.0017 Score=57.67 Aligned_cols=251 Identities=6% Similarity=-0.006 Sum_probs=147.8
Q ss_pred CCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCC
Q psy13635 70 LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGK 149 (357)
Q Consensus 70 ~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~ 149 (357)
.....++++++.+..|. +-..++.|...+..... ....+.........+++.+.+ ++.++-...+.|...++...
T Consensus 23 ~~~v~~~~~s~~~~~l~-s~~~dg~i~iw~~~~~~---~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~ 97 (312)
T 4ery_A 23 TKAVSSVKFSPNGEWLA-SSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDVSSG 97 (312)
T ss_dssp SSCEEEEEECTTSSEEE-EEETTSCEEEEETTTCC---EEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTC
T ss_pred CCcEEEEEECCCCCEEE-EeeCCCeEEEEeCCCcc---cchhhccCCCceEEEEEcCCC-CEEEEECCCCEEEEEECCCC
Confidence 34678899998666554 44455677777776543 233444444567889999755 45555556789999998755
Q ss_pred ceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCC
Q psy13635 150 KRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPA 229 (357)
Q Consensus 150 ~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~ 229 (357)
......... -.....+++.+.+..|+ +....+.|...++..................++++|.
T Consensus 98 ~~~~~~~~~----------------~~~v~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (312)
T 4ery_A 98 KCLKTLKGH----------------SNYVFCCNFNPQSNLIV-SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 160 (312)
T ss_dssp CEEEEEECC----------------SSCEEEEEECSSSSEEE-EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred cEEEEEcCC----------------CCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCC
Confidence 433322211 12345677876555554 5555678888888754443333333345688999987
Q ss_pred CCEEEEEeCCCCCCeEEEEecCCCceE-EEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCc
Q psy13635 230 HGYLFWSDWNEKRPKIERSLLNGGERV-LLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPH 308 (357)
Q Consensus 230 ~g~Ly~~d~~~~~~~I~~~~~dg~~~~-~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~ 308 (357)
...|+.+... +.|...++...... .+..........+++++.+..|..+ ...+.|...+................
T Consensus 161 ~~~l~~~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~ 236 (312)
T 4ery_A 161 GSLIVSSSYD---GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGHKNE 236 (312)
T ss_dssp SSEEEEEETT---SCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEE-ETTTEEEEEETTTTEEEEEECSSCCS
T ss_pred CCEEEEEeCC---CcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEE-cCCCeEEEEECCCCcEEEEEEecCCc
Confidence 5566655544 57888887654433 3322233344678898665555544 45678988888654433333221111
Q ss_pred --eEEEEE--ECCEEEEEeCCCCeEEEEeCccCceeEEEecc
Q psy13635 309 --VFGISL--LGDYVYWTDWQRRSIDRVNKITGNDREVIIER 346 (357)
Q Consensus 309 --p~gia~--~~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~ 346 (357)
...... .++.++++-...+.|+..+..+++....+..+
T Consensus 237 ~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h 278 (312)
T 4ery_A 237 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 278 (312)
T ss_dssp SSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCC
T ss_pred eEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhcc
Confidence 111122 24555666666677877777666665555433
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=98.29 E-value=0.0018 Score=57.60 Aligned_cols=254 Identities=8% Similarity=-0.003 Sum_probs=152.7
Q ss_pred cCCCCeEEEEEe-CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCC
Q psy13635 37 HHVAAQMLLFAT-SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNG 115 (357)
Q Consensus 37 ~~~~~~~l~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 115 (357)
-++...+++.+. ...|+..++..................+++++.++.|+ +-..++.|...++.... ....+...
T Consensus 31 ~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~---~~~~~~~~ 106 (312)
T 4ery_A 31 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV-SASDDKTLKIWDVSSGK---CLKTLKGH 106 (312)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE-EEETTSEEEEEETTTCC---EEEEEECC
T ss_pred ECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEE-EECCCCEEEEEECCCCc---EEEEEcCC
Confidence 344455565555 45688888866444444444556788999998665555 44556788888887653 23344444
Q ss_pred cCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeC
Q psy13635 116 LITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDT 195 (357)
Q Consensus 116 ~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~ 195 (357)
-.....+++.+.++ ++++-...+.|...++............ -.....+++.+.+..| ++..
T Consensus 107 ~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~l-~~~~ 168 (312)
T 4ery_A 107 SNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAH----------------SDPVSAVHFNRDGSLI-VSSS 168 (312)
T ss_dssp SSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEEEECCC----------------SSCEEEEEECTTSSEE-EEEE
T ss_pred CCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEEEEEecCC----------------CCcEEEEEEcCCCCEE-EEEe
Confidence 45577889987554 4555556788999998654433222111 1234677887655444 4555
Q ss_pred CCCeEEEEEcCCCc-eEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCC--ceEEEEe
Q psy13635 196 GTDRIEVCRLEGTH-RKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGW--PNGITLD 272 (357)
Q Consensus 196 ~~~~I~~~~~~g~~-~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~--P~giaid 272 (357)
..+.|...++.... ...+..........++++|....|..+... +.|...++............... .....+.
T Consensus 169 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (312)
T 4ery_A 169 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 245 (312)
T ss_dssp TTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETT---TEEEEEETTTTEEEEEECSSCCSSSCCCEEEE
T ss_pred CCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCC---CeEEEEECCCCcEEEEEEecCCceEEEEEEEE
Confidence 56788888887443 334433333445778999876666665544 58888888765444333222111 1222333
Q ss_pred cCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEE
Q psy13635 273 VDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLL 315 (357)
Q Consensus 273 ~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~ 315 (357)
..++.++++-...+.|...+.........+.........+++.
T Consensus 246 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 288 (312)
T 4ery_A 246 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACH 288 (312)
T ss_dssp CSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred eCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeec
Confidence 3566677777777889999987655544444444455677775
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=0.0032 Score=63.31 Aligned_cols=243 Identities=11% Similarity=0.055 Sum_probs=146.2
Q ss_pred ccCCEEEEEeCCC----CeEEEEEcCCCCcceeEEEEeC-Cc-----CCceeEEEEcCCCeEEEEeCCCC----EEEEEE
Q psy13635 80 YKKSMVCWTDHGT----EMISCCTFDGNNVGSKHNVITN-GL-----ITPDGLAIDWLTEKLYWTDSETN----KLEVSS 145 (357)
Q Consensus 80 ~~~~~ly~~d~~~----~~I~~~~~~g~~~~~~~~~~~~-~~-----~~p~glavd~~~~~ly~td~~~~----~I~~~~ 145 (357)
+.++++|++-... ..|++.+..+.. .+.++.. .+ ....++++.+.++.|.++....+ .|++.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d 157 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGE---ARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMK 157 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSC---CEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEE
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCC---cEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 5577887764322 267888876653 1333221 11 13457889988888877654322 899999
Q ss_pred cCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCC---------------CeEEEEEcCCCce
Q psy13635 146 LDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGT---------------DRIEVCRLEGTHR 210 (357)
Q Consensus 146 ~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~---------------~~I~~~~~~g~~~ 210 (357)
+++.......... ....+++..+.++.||++.... ..|++.++.+...
T Consensus 158 ~~tg~~~~~~~~~-----------------~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~ 220 (710)
T 2xdw_A 158 VDGAKELPDVLER-----------------VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQS 220 (710)
T ss_dssp TTTTEEEEEEEEE-----------------ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGG
T ss_pred CCCCCCCcccccC-----------------cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcc
Confidence 9876543321111 1245677777777888775432 2488888876442
Q ss_pred --EEEecCC--CCCceEEEEeCCCCEEEEEeCCCC--CCeEEEEecCC------C--ceEEEeeCCCCCceEEEEecCCC
Q psy13635 211 --KVLVNTD--LVEPRAITLSPAHGYLFWSDWNEK--RPKIERSLLNG------G--ERVLLVKDRLGWPNGITLDVDNE 276 (357)
Q Consensus 211 --~~~~~~~--~~~P~giavd~~~g~Ly~~d~~~~--~~~I~~~~~dg------~--~~~~~~~~~l~~P~giaid~~~~ 276 (357)
..+.... -....+++++|.++.|+++..... ...|+..++++ . ....+... ...-. -.+++.++
T Consensus 221 ~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~-~~~~~-~~~s~dg~ 298 (710)
T 2xdw_A 221 EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN-FEGEY-DYVTNEGT 298 (710)
T ss_dssp GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS-SSSCE-EEEEEETT
T ss_pred cceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCC-CCcEE-EEEeccCC
Confidence 2332221 123468999998888888765221 25899999875 3 24444322 22112 23566788
Q ss_pred EEEEEeCC---CCeEEEEeCCCCC---eEEEecCCC-CceEEEEEE-CCEEEEEeCCCC--eEEEEeCccCceeEEEe
Q psy13635 277 KLYWCDAK---TDKIEMIDFDGNN---RRELINENL-PHVFGISLL-GDYVYWTDWQRR--SIDRVNKITGNDREVII 344 (357)
Q Consensus 277 ~lY~~d~~---~~~I~~~~~dG~~---~~~i~~~~~-~~p~gia~~-~~~ly~td~~~~--~I~~~~~~~g~~~~~i~ 344 (357)
.||+.... +.+|+.++.++.. .+.+....- ....++++. +++++++....+ +|+.++..+|+..+.+.
T Consensus 299 ~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~ 376 (710)
T 2xdw_A 299 VFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFP 376 (710)
T ss_dssp EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEEC
T ss_pred EEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecC
Confidence 89887643 4589999987654 245554322 245678887 788888765554 57778865676555543
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=98.26 E-value=0.0024 Score=57.77 Aligned_cols=269 Identities=8% Similarity=-0.030 Sum_probs=156.7
Q ss_pred CCCCeEEEEEe-CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCc-ceeEEEEeCC
Q psy13635 38 HVAAQMLLFAT-SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNV-GSKHNVITNG 115 (357)
Q Consensus 38 ~~~~~~l~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~~~~ 115 (357)
++...+|+-+. +..|+..|+..................+++++.+..|... ..++.|...++..... ......+...
T Consensus 64 s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~d~~v~iw~~~~~~~~~~~~~~~~~h 142 (340)
T 1got_B 64 GTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACG-GLDNICSIYNLKTREGNVRVSRELAGH 142 (340)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEE-ETTCEEEEEETTTCSBSCEEEEEEECC
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEE-eCCCeEEEEECccCCCcceeEEEecCC
Confidence 44455555544 4568888987654444444455568899999876655544 4567788777765421 0112223333
Q ss_pred cCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeC
Q psy13635 116 LITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDT 195 (357)
Q Consensus 116 ~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~ 195 (357)
......+++.+ .+. +++-...+.|...++........+.. --.....+++.+. +.++++..
T Consensus 143 ~~~v~~~~~~~-~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~----------------h~~~v~~~~~~~~-~~~l~sg~ 203 (340)
T 1got_B 143 TGYLSCCRFLD-DNQ-IVTSSGDTTCALWDIETGQQTTTFTG----------------HTGDVMSLSLAPD-TRLFVSGA 203 (340)
T ss_dssp SSCEEEEEEEE-TTE-EEEEETTSCEEEEETTTTEEEEEECC----------------CSSCEEEEEECTT-SSEEEEEE
T ss_pred CccEEEEEECC-CCc-EEEEECCCcEEEEECCCCcEEEEEcC----------------CCCceEEEEECCC-CCEEEEEe
Confidence 34456677764 444 44555678888888765443322211 1124567888864 45666766
Q ss_pred CCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeC-C-CCCceEEEEec
Q psy13635 196 GTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKD-R-LGWPNGITLDV 273 (357)
Q Consensus 196 ~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~-~-l~~P~giaid~ 273 (357)
..+.|...++.................+++++|....|..+... +.|...++........... . ......+++.+
T Consensus 204 ~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d---~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 280 (340)
T 1got_B 204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD---ATCRLFDLRADQELMTYSHDNIICGITSVSFSK 280 (340)
T ss_dssp TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETT---SCEEEEETTTTEEEEEECCTTCCSCEEEEEECT
T ss_pred CCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCC---CcEEEEECCCCcEEEEEccCCcccceEEEEECC
Confidence 67789988877554443343344568899999975555554443 5788888765544333321 1 22457889986
Q ss_pred CCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEEC-CEEEEEeCCCCeEE
Q psy13635 274 DNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLG-DYVYWTDWQRRSID 330 (357)
Q Consensus 274 ~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~~-~~ly~td~~~~~I~ 330 (357)
. +++..+-...+.|...+.........+...-.....+++.. +....+-...+.|.
T Consensus 281 ~-g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~ 337 (340)
T 1got_B 281 S-GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337 (340)
T ss_dssp T-SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred C-CCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEE
Confidence 4 44555555677899988755444334443444556677653 44444444445543
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=98.25 E-value=0.0011 Score=60.75 Aligned_cols=204 Identities=13% Similarity=0.051 Sum_probs=131.1
Q ss_pred CCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEe--CCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEc
Q psy13635 69 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT--NGLITPDGLAIDWLTEKLYWTDSETNKLEVSSL 146 (357)
Q Consensus 69 ~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~--~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~ 146 (357)
......++++++.+..++.+...++.|...++.+.. ....+. ..-....++++.+.++.++++-...+.|...++
T Consensus 72 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~ 148 (383)
T 3ei3_B 72 FDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN---KTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDF 148 (383)
T ss_dssp CSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT---CEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEET
T ss_pred CCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc---cceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEEC
Confidence 345688999998763555555567788988988664 133332 234567889998755566666667899999999
Q ss_pred CCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEE
Q psy13635 147 DGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITL 226 (357)
Q Consensus 147 ~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giav 226 (357)
.+.....+.... ..-.....+++.+.+..|+ +....+.|...++++.....+.. .......+++
T Consensus 149 ~~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~-h~~~v~~~~~ 212 (383)
T 3ei3_B 149 SGSVIQVFAKTD--------------SWDYWYCCVDVSVSRQMLA-TGDSTGRLLLLGLDGHEIFKEKL-HKAKVTHAEF 212 (383)
T ss_dssp TSCEEEEEECCC--------------CSSCCEEEEEEETTTTEEE-EEETTSEEEEEETTSCEEEEEEC-SSSCEEEEEE
T ss_pred CCCceEEEeccC--------------CCCCCeEEEEECCCCCEEE-EECCCCCEEEEECCCCEEEEecc-CCCcEEEEEE
Confidence 876554443211 0112467888887666555 44455789999998776655543 3467889999
Q ss_pred eCCCCEEEEEeCCCCCCeEEEEecCC----CceEEEeeCCCCCceEEEEec-CCCEEEEEeCCCCeEEEEeCCC
Q psy13635 227 SPAHGYLFWSDWNEKRPKIERSLLNG----GERVLLVKDRLGWPNGITLDV-DNEKLYWCDAKTDKIEMIDFDG 295 (357)
Q Consensus 227 d~~~g~Ly~~d~~~~~~~I~~~~~dg----~~~~~~~~~~l~~P~giaid~-~~~~lY~~d~~~~~I~~~~~dG 295 (357)
+|....++++-... +.|...++.. ....... ..-....++++++ .+..|+ +-...+.|...++..
T Consensus 213 ~~~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~-~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 213 NPRCDWLMATSSVD--ATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLL-TTDQRNEIRVYSSYD 282 (383)
T ss_dssp CSSCTTEEEEEETT--SEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEE-EEESSSEEEEEETTB
T ss_pred CCCCCCEEEEEeCC--CEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEE-EEcCCCcEEEEECCC
Confidence 98765244444332 5787777764 2222222 2345678999987 444554 445567899998754
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=98.21 E-value=0.0022 Score=62.42 Aligned_cols=255 Identities=11% Similarity=-0.027 Sum_probs=150.6
Q ss_pred CCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCc-ceeEEEEeCCcCC-ceeEEEEc--CCCeEEEEeCCCCEEEEEE
Q psy13635 70 LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNV-GSKHNVITNGLIT-PDGLAIDW--LTEKLYWTDSETNKLEVSS 145 (357)
Q Consensus 70 ~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~~~~~~~-p~glavd~--~~~~ly~td~~~~~I~~~~ 145 (357)
...+.++++++.++.|..+. ++.|...+++.... .+....+...-.. +..+++.+ .++.|+.+ ..++.|...+
T Consensus 18 ~~~v~~~~~spdg~~l~~~~--~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~-~~dg~v~vw~ 94 (615)
T 1pgu_A 18 RNFTTHLSYDPTTNAIAYPC--GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSG-DESGKVIVWG 94 (615)
T ss_dssp TTCCCCCEEETTTTEEEEEE--TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEE-ETTSEEEEEE
T ss_pred cCceeEEEECCCCCEEEEec--CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEe-cCCCEEEEEe
Confidence 34677899999888888877 56788778774400 0123444444445 78999997 55555544 4578888888
Q ss_pred cCCC------ceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCC---CeEEEEEcCCCceEEEecC
Q psy13635 146 LDGK------KRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGT---DRIEVCRLEGTHRKVLVNT 216 (357)
Q Consensus 146 ~~g~------~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~---~~I~~~~~~g~~~~~~~~~ 216 (357)
+... ..+.+..- ...-.....+++.+.+..|+.+.... +.|...+ .+.... ....
T Consensus 95 ~~~~~~~~~~~~~~~~~~--------------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d-~~~~~~-~~~~ 158 (615)
T 1pgu_A 95 WTFDKESNSVEVNVKSEF--------------QVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD-SGNSLG-EVSG 158 (615)
T ss_dssp EEEEGGGTEEEEEEEEEE--------------ECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT-TCCEEE-ECCS
T ss_pred CCCCcccccccccccchh--------------hcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE-CCCcce-eeec
Confidence 7422 11111100 00112467888888777777766543 3555554 233222 2333
Q ss_pred CCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCC---CceEEEEecCCCEEEEEeCCCCeEEEEeC
Q psy13635 217 DLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLG---WPNGITLDVDNEKLYWCDAKTDKIEMIDF 293 (357)
Q Consensus 217 ~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~---~P~giaid~~~~~lY~~d~~~~~I~~~~~ 293 (357)
.......++++|.+..++.+-... +.|...+.........+...-. ....+++.+.+++.+++-...+.|...+.
T Consensus 159 ~~~~v~~~~~~~~~~~~l~~~~~d--~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 236 (615)
T 1pgu_A 159 HSQRINACHLKQSRPMRSMTVGDD--GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG 236 (615)
T ss_dssp CSSCEEEEEECSSSSCEEEEEETT--TEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEET
T ss_pred CCccEEEEEECCCCCcEEEEEeCC--CcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEEC
Confidence 445678999998755344443332 5888888765544444433333 56889998762444444445678999997
Q ss_pred CCCCeEEEe-c---CCCCceEEEEEECCEEEEEeCCCCeEEEEeCccCceeEEEec
Q psy13635 294 DGNNRRELI-N---ENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVIIE 345 (357)
Q Consensus 294 dG~~~~~i~-~---~~~~~p~gia~~~~~ly~td~~~~~I~~~~~~~g~~~~~i~~ 345 (357)
........+ . ........+++.++..+++-...+.|...+..+++....+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 292 (615)
T 1pgu_A 237 KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTL 292 (615)
T ss_dssp TTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred CCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcC
Confidence 654443333 2 334455677764444444445567888888766776655543
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=98.21 E-value=0.0036 Score=57.87 Aligned_cols=266 Identities=11% Similarity=0.001 Sum_probs=151.5
Q ss_pred EEEEe-CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeE
Q psy13635 44 LLFAT-SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGL 122 (357)
Q Consensus 44 l~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~gl 122 (357)
|+.+. ...++..|+..... ....... ....+..-..++.++.+-..++.|...++.... ....+.........+
T Consensus 71 l~~~~~d~~v~i~d~~~~~~-~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~h~~~v~~~ 145 (420)
T 3vl1_A 71 LYKARLDGHDFLFNTIIRDG-SKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL---QREIDQAHVSEITKL 145 (420)
T ss_dssp EEEEEETTEEEEEECCSEET-TTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE---EEEETTSSSSCEEEE
T ss_pred EEEEEcCCcEEEEEecccce-eeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc---eeeecccccCccEEE
Confidence 44443 55688888765221 1111222 344443333345555555566788888887653 233333444667889
Q ss_pred EEEcCCCeEEEEeCCCCEEEEEEcCCCc-eEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEE
Q psy13635 123 AIDWLTEKLYWTDSETNKLEVSSLDGKK-RKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIE 201 (357)
Q Consensus 123 avd~~~~~ly~td~~~~~I~~~~~~g~~-~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~ 201 (357)
++.+.++ +.++-..++.|...++.... ...+... -....++++.+.+..|+ +....+.|.
T Consensus 146 ~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~h-----------------~~~v~~~~~~~~~~~l~-s~~~d~~v~ 206 (420)
T 3vl1_A 146 KFFPSGE-ALISSSQDMQLKIWSVKDGSNPRTLIGH-----------------RATVTDIAIIDRGRNVL-SASLDGTIR 206 (420)
T ss_dssp EECTTSS-EEEEEETTSEEEEEETTTCCCCEEEECC-----------------SSCEEEEEEETTTTEEE-EEETTSCEE
T ss_pred EECCCCC-EEEEEeCCCeEEEEeCCCCcCceEEcCC-----------------CCcEEEEEEcCCCCEEE-EEcCCCcEE
Confidence 9997554 55555567899999986443 3333211 12467788887665555 444556788
Q ss_pred EEEcCCCceEEEecC---CC---------------------CCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEE
Q psy13635 202 VCRLEGTHRKVLVNT---DL---------------------VEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVL 257 (357)
Q Consensus 202 ~~~~~g~~~~~~~~~---~~---------------------~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~ 257 (357)
..++........... .. .....++++|....|+.+... +.|...++.......
T Consensus 207 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~ 283 (420)
T 3vl1_A 207 LWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVS---GVITVHNVFSKEQTI 283 (420)
T ss_dssp EEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETT---SCEEEEETTTCCEEE
T ss_pred EeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCC---CeEEEEECCCCceeE
Confidence 888764433322221 11 122334455653344444433 578888886654443
Q ss_pred EeeC-CCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCC-C-eEEEecCCCCceEEEEEECCEEEEEeCCCCeEEEEeC
Q psy13635 258 LVKD-RLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGN-N-RRELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 258 ~~~~-~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~-~-~~~i~~~~~~~p~gia~~~~~ly~td~~~~~I~~~~~ 334 (357)
.... .......+++++.+..++++-...+.|...++... . ...+..........+....+.++++-...+.|...+.
T Consensus 284 ~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~ 363 (420)
T 3vl1_A 284 QLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDII 363 (420)
T ss_dssp EECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEE
T ss_pred EcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEec
Confidence 3333 23456899998766635555556789999998653 3 3334332333445565667788888777788776665
Q ss_pred cc
Q psy13635 335 IT 336 (357)
Q Consensus 335 ~~ 336 (357)
.+
T Consensus 364 ~~ 365 (420)
T 3vl1_A 364 SD 365 (420)
T ss_dssp CC
T ss_pred cC
Confidence 33
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=98.21 E-value=0.0011 Score=67.00 Aligned_cols=245 Identities=11% Similarity=0.071 Sum_probs=133.4
Q ss_pred CCCCeEEEEEeC----------CcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcce
Q psy13635 38 HVAAQMLLFATS----------KDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGS 107 (357)
Q Consensus 38 ~~~~~~l~~~~~----------~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~ 107 (357)
++...+|+++.. ..++..|+.++ ....+..........+++|++.+|.++. ++.|+..+++++.
T Consensus 70 Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~-~~~~l~~~~~~~~~~~~SPdG~~la~~~--~~~i~~~~~~~~~--- 143 (740)
T 4a5s_A 70 SPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR-QLITEERIPNNTQWVTWSPVGHKLAYVW--NNDIYVKIEPNLP--- 143 (740)
T ss_dssp CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT-EECCSSCCCTTEEEEEECSSTTCEEEEE--TTEEEEESSTTSC---
T ss_pred CCCCCEEEEEECCeeeEEEccceEEEEEECCCC-cEEEcccCCCcceeeEECCCCCEEEEEE--CCeEEEEECCCCc---
Confidence 556667777775 45678998773 3333333345678889999888887663 3578888877654
Q ss_pred eEEEEeCC------------------cCCceeEEEEcCCCeEEEEeCCCC------------------------------
Q psy13635 108 KHNVITNG------------------LITPDGLAIDWLTEKLYWTDSETN------------------------------ 139 (357)
Q Consensus 108 ~~~~~~~~------------------~~~p~glavd~~~~~ly~td~~~~------------------------------ 139 (357)
...+...+ +....++++.|.++.|.++.....
T Consensus 144 ~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~ 223 (740)
T 4a5s_A 144 SYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGA 223 (740)
T ss_dssp CEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTS
T ss_pred eEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcC
Confidence 12221112 122345788888887776532111
Q ss_pred -----EEEEEEcCC---C---ceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeE-EEEeCCCC--eEEEEEc
Q psy13635 140 -----KLEVSSLDG---K---KRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNL-YWTDTGTD--RIEVCRL 205 (357)
Q Consensus 140 -----~I~~~~~~g---~---~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~l-Y~td~~~~--~I~~~~~ 205 (357)
+|...++++ . ....+.. |..+ ...-.....++..+.++.+ ++.+...+ .|..++.
T Consensus 224 ~~~~~~l~v~d~~~~~~~~~~~~~~l~~-----~~~~------~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~ 292 (740)
T 4a5s_A 224 VNPTVKFFVVNTDSLSSVTNATSIQITA-----PASM------LIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDY 292 (740)
T ss_dssp CCCEEEEEEEETTSCCSSSCCCEEEECC-----CHHH------HTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEE
T ss_pred cCCeeEEEEEECCCCCCCCcceEEEecC-----CccC------CCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEEC
Confidence 233333333 2 1111100 0000 0000112344555544423 34444433 6888887
Q ss_pred CCCc-------eEEEe-cC--C-CC--CceEEEEeCCCCEEE-EEeCCCCCCeEEEEecCCCceEEEeeCCCCCceE-EE
Q psy13635 206 EGTH-------RKVLV-NT--D-LV--EPRAITLSPAHGYLF-WSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNG-IT 270 (357)
Q Consensus 206 ~g~~-------~~~~~-~~--~-~~--~P~giavd~~~g~Ly-~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~g-ia 270 (357)
++.. ...+. .. . .. .+...+++|.+..|+ |........+|+..+.+|...+.+.... ..... +.
T Consensus 293 ~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~-~~v~~~~~ 371 (740)
T 4a5s_A 293 DESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGT-WEVIGIEA 371 (740)
T ss_dssp ETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSS-SCEEEEEE
T ss_pred CCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCC-EEEEEEEE
Confidence 7644 22221 11 1 11 145678898766665 5543322369999999998777665332 22233 33
Q ss_pred EecCCCEEEEEeCC------CCeEEEEeCCCCCeEEEe
Q psy13635 271 LDVDNEKLYWCDAK------TDKIEMIDFDGNNRRELI 302 (357)
Q Consensus 271 id~~~~~lY~~d~~------~~~I~~~~~dG~~~~~i~ 302 (357)
.| ++.||++... ...|++++++|...+..+
T Consensus 372 ~d--~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~l 407 (740)
T 4a5s_A 372 LT--SDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCL 407 (740)
T ss_dssp EC--SSEEEEEESCGGGCTTCBEEEEEETTEEEEEEES
T ss_pred Ee--CCEEEEEEecCCCCCceeEEEEEECCCCCcceee
Confidence 54 7889988754 357999999987654333
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.21 E-value=0.004 Score=63.29 Aligned_cols=265 Identities=10% Similarity=-0.024 Sum_probs=151.8
Q ss_pred EEEEeC-CcEEEEEcCCCCcceEecc-------------C--CCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcce
Q psy13635 44 LLFATS-KDIRIANLSRPLKPVTIIK-------------D--LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGS 107 (357)
Q Consensus 44 l~~~~~-~~i~~~~~~~~~~~~~~~~-------------~--~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~ 107 (357)
|.++.. ..|.+++..+.. ...... . .....++..|. ++.||+. ...+.|.+++......
T Consensus 271 lWigt~~~Gl~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~-~g~lWig-t~~~Gl~~~~~~~~~~-- 345 (781)
T 3v9f_A 271 LWIATELNGIMILDLQQNQ-FLLPEQIRFEFIREGDNNYSLSNASARYIFQDS-FNNIWIG-TWGGGINFISNAPPTF-- 345 (781)
T ss_dssp EEEEESSSCEEEEETTCC----------CEEECBCSSTTSBSSSCEEEEEECS-SCCEEEE-EBSSCEEEECSSCCSC--
T ss_pred EEEEeCCCCeEEECCCCCe-eeeeeccccccccCCCCCCCCCCCeEEEEEEeC-CCCEEEE-ecCCeEEEeCCCCCcc--
Confidence 444444 778888876532 211111 1 23467787776 5566554 4345678777765431
Q ss_pred eEEEE-------eCCc--CCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCC
Q psy13635 108 KHNVI-------TNGL--ITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHP 178 (357)
Q Consensus 108 ~~~~~-------~~~~--~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p 178 (357)
.... ..++ ....+++.|. .++||+.... +-|.+++......+.+.. +..+ .-...
T Consensus 346 -~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lWigt~~-~Gl~~~~~~~~~~~~~~~-----~~~~--------~~~~v 409 (781)
T 3v9f_A 346 -HTWSYSPTQMNESSLSNKVVSSVCDDG-QGKLWIGTDG-GGINVFENGKRVAIYNKE-----NREL--------LSNSV 409 (781)
T ss_dssp -EEEC----CCCSSCCSSSCEEEEEECT-TSCEEEEEBS-SCEEEEETTEEEEECC----------C--------CCSBE
T ss_pred -eeeccCccccccCCCCCcceEEEEEcC-CCCEEEEeCC-CcEEEEECCCCeEEEccC-----CCCC--------CCcce
Confidence 1211 1122 3467788884 6788876533 447777765432221110 0000 01245
Q ss_pred ceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecC--CCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceE
Q psy13635 179 DGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNT--DLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERV 256 (357)
Q Consensus 179 ~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~--~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~ 256 (357)
.+++.| ..+.||+.... +.+.+++......+..... .......|+.|+ .|.||++... .+.+.+.+.....
T Consensus 410 ~~i~~d-~~g~lWigt~~-~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lwigt~~----Gl~~~~~~~~~~~ 482 (781)
T 3v9f_A 410 LCSLKD-SEGNLWFGTYL-GNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKKIWIGTHA----GVFVIDLASKKVI 482 (781)
T ss_dssp EEEEEC-TTSCEEEEETT-EEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSEEEEEETT----EEEEEESSSSSCC
T ss_pred EEEEEC-CCCCEEEEecc-CCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCCEEEEECC----ceEEEeCCCCeEE
Confidence 678888 56788876543 4688888765443333211 234677888886 5899888753 7888888765444
Q ss_pred EEeeCC-----CCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecC-CC--CceEEEEEE-CCEEEEEeCCCC
Q psy13635 257 LLVKDR-----LGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINE-NL--PHVFGISLL-GDYVYWTDWQRR 327 (357)
Q Consensus 257 ~~~~~~-----l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~-~~--~~p~gia~~-~~~ly~td~~~~ 327 (357)
...... ...+.+|+.| .+++||++..+. .+.+++.++...+.+... .+ ....+|..+ +|.||++.. .|
T Consensus 483 ~~~~~~~~~~~~~~i~~i~~d-~~g~lWigt~~~-Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~G 559 (781)
T 3v9f_A 483 HHYDTSNSQLLENFVRSIAQD-SEGRFWIGTFGG-GVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EG 559 (781)
T ss_dssp EEECTTTSSCSCSCEEEEEEC-TTCCEEEEESSS-CEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TE
T ss_pred ecccCcccccccceeEEEEEc-CCCCEEEEEcCC-CEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CC
Confidence 433221 2456889998 688898887543 588888876655444321 22 245677777 578887765 34
Q ss_pred eEEEEeCccCce
Q psy13635 328 SIDRVNKITGND 339 (357)
Q Consensus 328 ~I~~~~~~~g~~ 339 (357)
-|.++++.+++.
T Consensus 560 lv~~~d~~~~~~ 571 (781)
T 3v9f_A 560 LVCFPSARNFDY 571 (781)
T ss_dssp EEEESCTTTCCC
T ss_pred ceEEECCCCCcE
Confidence 438888755543
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=0.0066 Score=64.76 Aligned_cols=276 Identities=9% Similarity=0.004 Sum_probs=170.9
Q ss_pred EEeecCCCCeEEEEEe-CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEE
Q psy13635 33 YALSHHVAAQMLLFAT-SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV 111 (357)
Q Consensus 33 ~~~~~~~~~~~l~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~ 111 (357)
+|++-++...+++.+. ...|+..|+..+..............+++|++.+..|..+ ..++.|...++.... ....
T Consensus 619 ~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-~~d~~v~vwd~~~~~---~~~~ 694 (1249)
T 3sfz_A 619 YHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATC-SADKKVKIWDSATGK---LVHT 694 (1249)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTCC---EEEE
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEE-eCCCeEEEEECCCCc---eEEE
Confidence 3444455566666555 4569999987755444444566678999999876665544 456789988887653 2334
Q ss_pred EeCCcCCceeEEEEcC-CCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeE
Q psy13635 112 ITNGLITPDGLAIDWL-TEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNL 190 (357)
Q Consensus 112 ~~~~~~~p~glavd~~-~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~l 190 (357)
+.........+++.+. .+.+..+....+.|...+++.......... .-.....+++.+.+..|
T Consensus 695 ~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~----------------h~~~v~~~~~sp~~~~l 758 (1249)
T 3sfz_A 695 YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG----------------HTNSVNHCRFSPDDELL 758 (1249)
T ss_dssp EECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECC----------------CSSCEEEEEECSSTTEE
T ss_pred EcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecC----------------CCCCEEEEEEecCCCEE
Confidence 4444456778888764 344556666778899999876654333211 11246678888755544
Q ss_pred EEEeCCCCeEEEEEcCCCceE-EEecCC------------CCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEE
Q psy13635 191 YWTDTGTDRIEVCRLEGTHRK-VLVNTD------------LVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVL 257 (357)
Q Consensus 191 Y~td~~~~~I~~~~~~g~~~~-~~~~~~------------~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~ 257 (357)
++....+.|...+....... .+.... ......++++|.+..+..+.. +.+...+........
T Consensus 759 -~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~----~~v~~~d~~~~~~~~ 833 (1249)
T 3sfz_A 759 -ASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK----NKVLLFDIHTSGLLA 833 (1249)
T ss_dssp -EEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEET----TEEEEEETTTCCEEE
T ss_pred -EEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcC----CcEEEEEecCCCcee
Confidence 45555678888887644322 221110 114557788887666666653 378788876655444
Q ss_pred Eee-CCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEE-CCEEEEEeCCCCeEEEEeC
Q psy13635 258 LVK-DRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLL-GDYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 258 ~~~-~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~-~~~ly~td~~~~~I~~~~~ 334 (357)
... ........+++.+.+..+ ++-...+.|...+.+................++++. ++..+++-...+.|...+.
T Consensus 834 ~~~~~~~~~v~~~~~sp~~~~l-~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~ 911 (1249)
T 3sfz_A 834 EIHTGHHSTIQYCDFSPYDHLA-VIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET 911 (1249)
T ss_dssp EEECSSSSCCCEEEECSSTTEE-EEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEH
T ss_pred EEcCCCCCceEEEEEcCCCCEE-EEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 333 334566889998655544 455567789999887655544444455567788886 3444555555677776653
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00037 Score=70.55 Aligned_cols=295 Identities=10% Similarity=0.070 Sum_probs=154.2
Q ss_pred CCeEEEEEeCCcEEEEEcCCCCcceEeccC-CC----cEEEEEEEccCCEEEEEeCC--------CCeEEEEEcCCCCcc
Q psy13635 40 AAQMLLFATSKDIRIANLSRPLKPVTIIKD-LE----EGAAIDYYYKKSMVCWTDHG--------TEMISCCTFDGNNVG 106 (357)
Q Consensus 40 ~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~----~~~~i~~d~~~~~ly~~d~~--------~~~I~~~~~~g~~~~ 106 (357)
...+++ +....|+..|+.++....++... .. ....++++|++..|.++... .+.++..++.+..
T Consensus 27 dg~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~-- 103 (740)
T 4a5s_A 27 DHEYLY-KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-- 103 (740)
T ss_dssp SSEEEE-EETTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE--
T ss_pred CCcEEE-EcCCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCc--
Confidence 334444 44677999998775433332221 11 12346789988888766431 1456778887763
Q ss_pred eeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCc--ceee--eeccCcccccCCceEE
Q psy13635 107 SKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQP--RAIA--SYKLPTIEVEHPDGVA 182 (357)
Q Consensus 107 ~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p--~~i~--~~~~~~~~~~~p~gla 182 (357)
...+..........++.|.++.|.++. .+.|+..++++.....+...+.... .+.. ++ ..+-+....+++
T Consensus 104 --~~~l~~~~~~~~~~~~SPdG~~la~~~--~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~--~ee~~~~~~~~~ 177 (740)
T 4a5s_A 104 --LITEERIPNNTQWVTWSPVGHKLAYVW--NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVY--EEEVFSAYSALW 177 (740)
T ss_dssp --ECCSSCCCTTEEEEEECSSTTCEEEEE--TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHH--HHHTSSSSBCEE
T ss_pred --EEEcccCCCcceeeEECCCCCEEEEEE--CCeEEEEECCCCceEEEcCCCCccceecCcccccc--cchhcCCCcceE
Confidence 222333233456778888888887764 4678888876655444322111000 0000 00 000012223455
Q ss_pred EeCCCCeEEEEe--CC-------------------------------C--CeEEEEEcCC---C---ceEEEec-----C
Q psy13635 183 VDWVARNLYWTD--TG-------------------------------T--DRIEVCRLEG---T---HRKVLVN-----T 216 (357)
Q Consensus 183 vD~~~~~lY~td--~~-------------------------------~--~~I~~~~~~g---~---~~~~~~~-----~ 216 (357)
..|.+..|.++. .. . .+|...++++ . ....+.. .
T Consensus 178 wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~ 257 (740)
T 4a5s_A 178 WSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLI 257 (740)
T ss_dssp ECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHT
T ss_pred ECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCC
Confidence 655555554431 11 0 1466677766 4 2333321 0
Q ss_pred CCCCceEEEEeCCCCEEE-EEeCCCCCCeEEEEecCCCc-------eEEEe-eCC---CC--CceEEEEecCCCEEE-EE
Q psy13635 217 DLVEPRAITLSPAHGYLF-WSDWNEKRPKIERSLLNGGE-------RVLLV-KDR---LG--WPNGITLDVDNEKLY-WC 281 (357)
Q Consensus 217 ~~~~P~giavd~~~g~Ly-~~d~~~~~~~I~~~~~dg~~-------~~~~~-~~~---l~--~P~giaid~~~~~lY-~~ 281 (357)
.......++..|.+..++ +.....+...|...+.++.. ...+. ... +. .+...++.+++..|+ |.
T Consensus 258 ~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~ 337 (740)
T 4a5s_A 258 GDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKII 337 (740)
T ss_dssp SCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEE
T ss_pred CCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEE
Confidence 122345677888644233 33433222478888887654 22221 111 11 134567776666765 55
Q ss_pred e--CCCCeEEEEeCCCCCeEEEecCCCCceEE-EEEECCEEEEEeCC------CCeEEEEeCccCceeEEEe
Q psy13635 282 D--AKTDKIEMIDFDGNNRRELINENLPHVFG-ISLLGDYVYWTDWQ------RRSIDRVNKITGNDREVII 344 (357)
Q Consensus 282 d--~~~~~I~~~~~dG~~~~~i~~~~~~~p~g-ia~~~~~ly~td~~------~~~I~~~~~~~g~~~~~i~ 344 (357)
. .+...|+.++.+|...+.+... -..... +.++++.||++... ...|++++..+++..+.+.
T Consensus 338 s~~~G~~~l~~~~~~~~~~~~lT~g-~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt 408 (740)
T 4a5s_A 338 SNEEGYRHICYFQIDKKDCTFITKG-TWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLS 408 (740)
T ss_dssp ECTTSCEEEEEEETTCSSCEESCCS-SSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESS
T ss_pred EcCCCceEEEEEECCCCceEecccC-CEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeec
Confidence 3 3446799999998877655443 222233 33568899998765 3569999884333333443
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=98.19 E-value=0.0018 Score=58.37 Aligned_cols=249 Identities=4% Similarity=-0.062 Sum_probs=141.3
Q ss_pred CCCcEEEEEEEcc---CCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeC--CcCCceeEEEEcCC---CeEEEEeCCCCE
Q psy13635 69 DLEEGAAIDYYYK---KSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN--GLITPDGLAIDWLT---EKLYWTDSETNK 140 (357)
Q Consensus 69 ~~~~~~~i~~d~~---~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~--~~~~p~glavd~~~---~~ly~td~~~~~ 140 (357)
......+++++|. ++.++++...++.|...+............... .-.....+++.+.. +.++++-..++.
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~ 96 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGI 96 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCE
T ss_pred CCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCE
Confidence 3456788999873 344444444455777777764431111111111 22456788888753 456666667889
Q ss_pred EEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEe---cCC
Q psy13635 141 LEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLV---NTD 217 (357)
Q Consensus 141 I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~---~~~ 217 (357)
|...++............ -.....+++.+.++.++++-...+.|...++......... ...
T Consensus 97 i~v~d~~~~~~~~~~~~~----------------~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 160 (366)
T 3k26_A 97 IRIINPITMQCIKHYVGH----------------GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH 160 (366)
T ss_dssp EEEECTTTCCEEEEEESC----------------CSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSC
T ss_pred EEEEEchhceEeeeecCC----------------CCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccc
Confidence 999998754433322211 1256778888745666666666778999998755444443 234
Q ss_pred CCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEE----------------------------EeeCCCCCceEE
Q psy13635 218 LVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVL----------------------------LVKDRLGWPNGI 269 (357)
Q Consensus 218 ~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~----------------------------~~~~~l~~P~gi 269 (357)
...+..++++|....|+.+... +.|...++....... .....-.....+
T Consensus 161 ~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 237 (366)
T 3k26_A 161 RDEVLSADYDLLGEKIMSCGMD---HSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCV 237 (366)
T ss_dssp SSCEEEEEECTTSSEEEEEETT---SCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEE
T ss_pred cCceeEEEECCCCCEEEEecCC---CCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEE
Confidence 4678899999976666666554 477777765422110 000022335677
Q ss_pred EEecCCCEEEEEeCCCCeEEEEeCCCCCe--------------EEEecCCCCceEEEEEE-C--CEEEEEeCCCCeEEEE
Q psy13635 270 TLDVDNEKLYWCDAKTDKIEMIDFDGNNR--------------RELINENLPHVFGISLL-G--DYVYWTDWQRRSIDRV 332 (357)
Q Consensus 270 aid~~~~~lY~~d~~~~~I~~~~~dG~~~--------------~~i~~~~~~~p~gia~~-~--~~ly~td~~~~~I~~~ 332 (357)
+++ + .++++-...+.|...+...... .............+++. + +.+.++-...+.|...
T Consensus 238 ~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vw 314 (366)
T 3k26_A 238 RWL--G-DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVW 314 (366)
T ss_dssp EEE--T-TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEE
T ss_pred EEc--C-CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEE
Confidence 775 3 3555555677888887654321 11111111223334433 2 4555555666788888
Q ss_pred eCccCce
Q psy13635 333 NKITGND 339 (357)
Q Consensus 333 ~~~~g~~ 339 (357)
+..+++.
T Consensus 315 d~~~~~~ 321 (366)
T 3k26_A 315 DLEVEDP 321 (366)
T ss_dssp ECCSSSG
T ss_pred ECCCCCC
Confidence 8766653
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.0022 Score=57.81 Aligned_cols=225 Identities=12% Similarity=0.052 Sum_probs=127.6
Q ss_pred CcEEEEEEEccCCEEEEEeC--------CCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCC----C
Q psy13635 71 EEGAAIDYYYKKSMVCWTDH--------GTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSE----T 138 (357)
Q Consensus 71 ~~~~~i~~d~~~~~ly~~d~--------~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~----~ 138 (357)
..+....+ ++.+|+++-. ....|+.+++++.. ...+ .....+++.|.++.|+++... .
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~----~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~ 84 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNA----RRFI----ENATMPRISPDGKKIAFMRANEEKKV 84 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCC----EEEE----ESCEEEEECTTSSEEEEEEEETTTTE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCc----eEEc----ccCCCeEECCCCCEEEEEEeccCCCc
Confidence 34445555 4567766521 13468888888764 2233 456778999888888877542 3
Q ss_pred CEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC----------------------
Q psy13635 139 NKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG---------------------- 196 (357)
Q Consensus 139 ~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~---------------------- 196 (357)
..|+++++++.....+.... . ..++++.+.++.|+++...
T Consensus 85 ~~l~~~~~~~g~~~~l~~~~-----------------~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 146 (347)
T 2gop_A 85 SEIWVADLETLSSKKILEAK-----------------N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGF 146 (347)
T ss_dssp EEEEEEETTTTEEEEEEEES-----------------E-EEEEEECTTSSEEEEEEECCCC---------CCCC------
T ss_pred ceEEEEECCCCceEEEEcCC-----------------C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCccc
Confidence 45888888876555443211 1 4566777677777776421
Q ss_pred ----CCeEEEEEcCCCce-EEEecCCCCCceEEEEeCCCCEEEEEeCCCC------CCeEEEEecCCCceEEEeeCCCCC
Q psy13635 197 ----TDRIEVCRLEGTHR-KVLVNTDLVEPRAITLSPAHGYLFWSDWNEK------RPKIERSLLNGGERVLLVKDRLGW 265 (357)
Q Consensus 197 ----~~~I~~~~~~g~~~-~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~------~~~I~~~~~dg~~~~~~~~~~l~~ 265 (357)
...|++.++++... +.+.. . ....++++|. |.+|.+..... ...|+.++ .| ....+... ..
T Consensus 147 ~~~~~~~l~~~d~~~~~~~~~l~~-~--~~~~~~~spd-g~~~~~~~~~~~~~~~~~~~l~~~d-~~-~~~~l~~~--~~ 218 (347)
T 2gop_A 147 FDGEKTTFWIFDTESEEVIEEFEK-P--RFSSGIWHRD-KIVVNVPHREIIPQYFKFWDIYIWE-DG-KEEKMFEK--VS 218 (347)
T ss_dssp ---CEEEEEEEETTTTEEEEEEEE-E--TTCEEEEETT-EEEEEEECCCSSCCSSCCEEEEEEE-TT-EEEEEEEE--ES
T ss_pred ccCccceEEEEECCCCeEEeeecC-C--CcccccCCCC-eEEEEEecccccccccccccEEEeC-CC-ceEEeccC--cc
Confidence 24788899887665 55543 2 6778999986 55554533210 24788888 33 33444332 22
Q ss_pred ceEEEEecCCCEEEEEeCC-------CCeEEEEeCCCCCeEEEecCCCCc-eEE-EEEECCEEEEEeCCCC--eEEEEeC
Q psy13635 266 PNGITLDVDNEKLYWCDAK-------TDKIEMIDFDGNNRRELINENLPH-VFG-ISLLGDYVYWTDWQRR--SIDRVNK 334 (357)
Q Consensus 266 P~giaid~~~~~lY~~d~~-------~~~I~~~~~dG~~~~~i~~~~~~~-p~g-ia~~~~~ly~td~~~~--~I~~~~~ 334 (357)
...+ .+++.+|+++... ...|+.++ .| ..+.+.. .... ... +++.++ +|++....+ .|+ ++
T Consensus 219 ~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~-~~~~l~~-~~~~~~~~~~~~sdg-~~~~~~~~~~~~l~-~~- 290 (347)
T 2gop_A 219 FYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD-GK-EVMGILD-EVDRGVGQAKIKDGK-VYFTLFEEGSVNLY-IW- 290 (347)
T ss_dssp EEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC-SS-CEEESST-TCCSEEEEEEEETTE-EEEEEEETTEEEEE-EE-
T ss_pred eeeE--CCCCCEEEEEEccccCCccccceEEEEC-CC-ceEeccc-cCCcccCCccEEcCc-EEEEEecCCcEEEE-Ec-
Confidence 2223 5667777766532 35788888 44 3333332 2222 233 444433 666544333 355 55
Q ss_pred ccCcee
Q psy13635 335 ITGNDR 340 (357)
Q Consensus 335 ~~g~~~ 340 (357)
+|+..
T Consensus 291 -~g~~~ 295 (347)
T 2gop_A 291 -DGEIK 295 (347)
T ss_dssp -SSSEE
T ss_pred -CCceE
Confidence 45543
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.17 E-value=0.0012 Score=59.58 Aligned_cols=239 Identities=10% Similarity=0.031 Sum_probs=131.9
Q ss_pred CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCC----CCeEEEEEcCCCCcceeEEEEeCCcCCceeEEE
Q psy13635 49 SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG----TEMISCCTFDGNNVGSKHNVITNGLITPDGLAI 124 (357)
Q Consensus 49 ~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~----~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glav 124 (357)
...|+.++++++. ...+ .....+.++|++..|+++... ...|+.+++++.. ...+.... . +.++++
T Consensus 42 ~~~l~~~d~~~~~-~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~---~~~l~~~~-~-~~~~~w 111 (347)
T 2gop_A 42 ENTIVIENLKNNA-RRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLS---SKKILEAK-N-IRSLEW 111 (347)
T ss_dssp EEEEEEEETTTCC-EEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTE---EEEEEEES-E-EEEEEE
T ss_pred cceEEEEeCCCCc-eEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCc---eEEEEcCC-C-ccceeE
Confidence 3468888987743 3333 456778899988888877543 2359999988763 22332222 2 778888
Q ss_pred EcCCCeEEEEeCC--------------------------CCEEEEEEcCCCce-EEEEecCCCCcceeeeeccCcccccC
Q psy13635 125 DWLTEKLYWTDSE--------------------------TNKLEVSSLDGKKR-KVLYWEDIDQPRAIASYKLPTIEVEH 177 (357)
Q Consensus 125 d~~~~~ly~td~~--------------------------~~~I~~~~~~g~~~-~~~~~~~~~~p~~i~~~~~~~~~~~~ 177 (357)
.+.++.|+++... ..+|++.++++... +.+.. . .
T Consensus 112 spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~------------------~ 172 (347)
T 2gop_A 112 NEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P------------------R 172 (347)
T ss_dssp CTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E------------------T
T ss_pred CCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C------------------C
Confidence 8888888887522 35788888876654 44321 1 3
Q ss_pred CceEEEeCCCCeEEEEeCC--------CCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCC-----CCCe
Q psy13635 178 PDGVAVDWVARNLYWTDTG--------TDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNE-----KRPK 244 (357)
Q Consensus 178 p~glavD~~~~~lY~td~~--------~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~-----~~~~ 244 (357)
...+++.+.+ .+|.+... ...|+.++ .|. .+.+... .... .++|.+.+|+++.... ....
T Consensus 173 ~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~-~~~l~~~--~~~~--~~spdg~~l~~~~~~~~~~~~~~~~ 245 (347)
T 2gop_A 173 FSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGK-EEKMFEK--VSFY--AVDSDGERILLYGKPEKKYMSEHNK 245 (347)
T ss_dssp TCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTE-EEEEEEE--ESEE--EEEECSSCEEEEECCSSSCCCSSCE
T ss_pred cccccCCCCe-EEEEEecccccccccccccEEEeC-CCc-eEEeccC--ccee--eECCCCCEEEEEEccccCCccccce
Confidence 4556666544 44444332 23677777 443 3333332 2222 2377666777765432 1258
Q ss_pred EEEEecCCCceEEEeeCCCCCceE-EEEecCCCEEEEEeCC--CCeEEEEeCCCCCeEEEecCCCCceEEEEEECCEEEE
Q psy13635 245 IERSLLNGGERVLLVKDRLGWPNG-ITLDVDNEKLYWCDAK--TDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYW 321 (357)
Q Consensus 245 I~~~~~dg~~~~~~~~~~l~~P~g-iaid~~~~~lY~~d~~--~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~~~~ly~ 321 (357)
|+..+ .| ....+....-..... ++++ ++ +|++... ..+|+ ++ +|.. ..+.. .-....++++.. .+++
T Consensus 246 l~~~d-~~-~~~~l~~~~~~~~~~~~~~s--dg-~~~~~~~~~~~~l~-~~-~g~~-~~~~~-~~~~v~~~~~s~-~~~~ 315 (347)
T 2gop_A 246 LYIYD-GK-EVMGILDEVDRGVGQAKIKD--GK-VYFTLFEEGSVNLY-IW-DGEI-KPIAK-GRHWIMGFDVDE-IVVY 315 (347)
T ss_dssp EEEEC-SS-CEEESSTTCCSEEEEEEEET--TE-EEEEEEETTEEEEE-EE-SSSE-EEEEC-SSSEEEEEEESS-SEEE
T ss_pred EEEEC-CC-ceEeccccCCcccCCccEEc--Cc-EEEEEecCCcEEEE-Ec-CCce-EEEec-CCCeEEeeeeeC-cEEE
Confidence 88888 43 333333221122333 5664 44 6665433 34566 66 5543 33443 233445666656 5544
Q ss_pred E-eCCC--CeEEEEe
Q psy13635 322 T-DWQR--RSIDRVN 333 (357)
Q Consensus 322 t-d~~~--~~I~~~~ 333 (357)
+ .... .+|+.++
T Consensus 316 ~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 316 LKETATRLRELFTWD 330 (347)
T ss_dssp EEECSSSCCEEEEES
T ss_pred EEcCCCChHHheEeC
Confidence 3 3222 2577776
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=0.0058 Score=65.19 Aligned_cols=245 Identities=9% Similarity=0.022 Sum_probs=147.6
Q ss_pred eecCCCCeEEEEEe-CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccC-CEEEEEeCCCCeEEEEEcCCCCcceeEEEE
Q psy13635 35 LSHHVAAQMLLFAT-SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKK-SMVCWTDHGTEMISCCTFDGNNVGSKHNVI 112 (357)
Q Consensus 35 ~~~~~~~~~l~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~-~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~ 112 (357)
++-++...+++.+. ...|+..|+..+...............+++.+.. +.+..+...++.|...++.... ....+
T Consensus 663 ~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~---~~~~~ 739 (1249)
T 3sfz_A 663 CAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE---CRNTM 739 (1249)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS---EEEEE
T ss_pred EEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc---hhhee
Confidence 33344455666555 4568899997754444444566678889998753 3455556667788888887664 23344
Q ss_pred eCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecC-CCCcceeeeeccCcccccCCceEEEeCCCCeEE
Q psy13635 113 TNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWED-IDQPRAIASYKLPTIEVEHPDGVAVDWVARNLY 191 (357)
Q Consensus 113 ~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~-~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY 191 (357)
......+..+++.+.++ ..++-...+.|...++............ ........ +......+..+++.+.+..+.
T Consensus 740 ~~h~~~v~~~~~sp~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~dg~~l~ 814 (1249)
T 3sfz_A 740 FGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDP----PEDVEVIVKCCSWSADGDKII 814 (1249)
T ss_dssp CCCSSCEEEEEECSSTT-EEEEEESSSEEEEEEGGGTEEEEEEECCCCC------------CCCCCBCCCCBCTTSSEEE
T ss_pred cCCCCCEEEEEEecCCC-EEEEEECCCeEEEEeCCCCcccceecccccccccCCc----cccccceEEEEEECCCCCEEE
Confidence 44445678899997544 5556666789999988655432222111 00000000 001112455667777666666
Q ss_pred EEeCCCCeEEEEEcCCCce-EEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEE
Q psy13635 192 WTDTGTDRIEVCRLEGTHR-KVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGIT 270 (357)
Q Consensus 192 ~td~~~~~I~~~~~~g~~~-~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~gia 270 (357)
.+. .+.+...+...... ..+..........++++|.+..+..+... +.|...+.+................+++
T Consensus 815 ~~~--~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---g~v~vwd~~~~~~~~~~~~h~~~v~~v~ 889 (1249)
T 3sfz_A 815 VAA--KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQ---YCVELWNIDSRLKVADCRGHLSWVHGVM 889 (1249)
T ss_dssp EEE--TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSS---SCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred EEc--CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCceeeecCCCccceEEEE
Confidence 665 36788888765443 33333445677899999976666665544 5788888877655555555556678999
Q ss_pred EecCCCEEEEEeCCCCeEEEEeC
Q psy13635 271 LDVDNEKLYWCDAKTDKIEMIDF 293 (357)
Q Consensus 271 id~~~~~lY~~d~~~~~I~~~~~ 293 (357)
+.+.+..|+.+ ...+.|...+.
T Consensus 890 ~spdg~~l~s~-s~dg~v~vw~~ 911 (1249)
T 3sfz_A 890 FSPDGSSFLTA-SDDQTIRVWET 911 (1249)
T ss_dssp ECTTSSEEEEE-ETTSCEEEEEH
T ss_pred ECCCCCEEEEE-eCCCeEEEEEc
Confidence 98655555444 44566666653
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.0047 Score=56.34 Aligned_cols=274 Identities=7% Similarity=-0.012 Sum_probs=155.2
Q ss_pred eecCCCCeEEEEEe-CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCc---ceeEE
Q psy13635 35 LSHHVAAQMLLFAT-SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNV---GSKHN 110 (357)
Q Consensus 35 ~~~~~~~~~l~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~---~~~~~ 110 (357)
+.-++...+|+-+. +..|+..|..................++++.+.+.. ..+-..++.+...++..... .....
T Consensus 70 ~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~-lasg~~d~~i~v~~~~~~~~~~~~~~~~ 148 (354)
T 2pbi_B 70 MDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCA-IACGGLDNKCSVYPLTFDKNENMAAKKK 148 (354)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSE-EEEESTTSEEEEEECCCCTTCCSGGGCE
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCE-EEEeeCCCCEEEEEEeccccccccccce
Confidence 33344445555554 456888887664444444444556788999986554 44555666776666543210 01122
Q ss_pred EEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCC-CCe
Q psy13635 111 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWV-ARN 189 (357)
Q Consensus 111 ~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~-~~~ 189 (357)
.+.........+++.+.+..| ++-+..+.|...++........+... -.....+++.+. .+.
T Consensus 149 ~~~~h~~~v~~~~~~~~~~~l-~t~s~D~~v~lwd~~~~~~~~~~~~h----------------~~~v~~~~~~~~~~g~ 211 (354)
T 2pbi_B 149 SVAMHTNYLSACSFTNSDMQI-LTASGDGTCALWDVESGQLLQSFHGH----------------GADVLCLDLAPSETGN 211 (354)
T ss_dssp EEEECSSCEEEEEECSSSSEE-EEEETTSEEEEEETTTCCEEEEEECC----------------SSCEEEEEECCCSSCC
T ss_pred eeeccCCcEEEEEEeCCCCEE-EEEeCCCcEEEEeCCCCeEEEEEcCC----------------CCCeEEEEEEeCCCCC
Confidence 222233456778888655544 45556789999998654432222111 012345566543 345
Q ss_pred EEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCC--CCCce
Q psy13635 190 LYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDR--LGWPN 267 (357)
Q Consensus 190 lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~--l~~P~ 267 (357)
++++-...+.|...++.................+++++|....|..+... +.|...++............ .....
T Consensus 212 ~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D---~~v~lwd~~~~~~~~~~~~~~~~~~~~ 288 (354)
T 2pbi_B 212 TFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDD---ATCRLYDLRADREVAIYSKESIIFGAS 288 (354)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT---SCEEEEETTTTEEEEEECCTTCCSCEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCC---CeEEEEECCCCcEEEEEcCCCccccee
Confidence 66666667789998887544433333344567899999875555555443 57777787655444443321 23457
Q ss_pred EEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEE-CCEEEEEeCCCCeEE
Q psy13635 268 GITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLL-GDYVYWTDWQRRSID 330 (357)
Q Consensus 268 giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~-~~~ly~td~~~~~I~ 330 (357)
.+++.+.+..| .+-...+.|...+.........+...-.....+++. ++..+.+-...+.|.
T Consensus 289 ~~~~s~~g~~l-~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~ 351 (354)
T 2pbi_B 289 SVDFSLSGRLL-FAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLR 351 (354)
T ss_dssp EEEECTTSSEE-EEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred EEEEeCCCCEE-EEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEE
Confidence 88888655444 444456788888874433333333344556677776 344444444445554
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.0021 Score=58.85 Aligned_cols=209 Identities=11% Similarity=0.077 Sum_probs=124.6
Q ss_pred cCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEE----------eCCcCCceeEEEEcCCCeEEEEeCC
Q psy13635 68 KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI----------TNGLITPDGLAIDWLTEKLYWTDSE 137 (357)
Q Consensus 68 ~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~----------~~~~~~p~glavd~~~~~ly~td~~ 137 (357)
..-....++++++.++.+..+-..++.|...+++........... ...-..+..+++.+.++.++++-..
T Consensus 41 ~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 120 (408)
T 4a11_B 41 IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF 120 (408)
T ss_dssp CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEET
T ss_pred ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeC
Confidence 345578899999834555555556678888888766421111100 0133457888998756667777777
Q ss_pred CCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCC--CCeEEEEeCCCCeEEEEEcCCCceEEEec
Q psy13635 138 TNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWV--ARNLYWTDTGTDRIEVCRLEGTHRKVLVN 215 (357)
Q Consensus 138 ~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~--~~~lY~td~~~~~I~~~~~~g~~~~~~~~ 215 (357)
.+.|...+++........... .....+++.+. ++.++++....+.|...++..........
T Consensus 121 d~~i~iwd~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~ 183 (408)
T 4a11_B 121 DKTLKVWDTNTLQTADVFNFE-----------------ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ 183 (408)
T ss_dssp TSEEEEEETTTTEEEEEEECS-----------------SCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC
T ss_pred CCeEEEeeCCCCccceeccCC-----------------CceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec
Confidence 889999998876554433211 12344555443 23355555556788888887544433333
Q ss_pred CCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCce-EEEe---------------eCCCCCceEEEEecCCCEEE
Q psy13635 216 TDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGER-VLLV---------------KDRLGWPNGITLDVDNEKLY 279 (357)
Q Consensus 216 ~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~-~~~~---------------~~~l~~P~giaid~~~~~lY 279 (357)
........++++|....++++-... +.|...++..... ...+ ...-....++++.+.+..|+
T Consensus 184 ~~~~~v~~~~~~~~~~~ll~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 261 (408)
T 4a11_B 184 GHRQEILAVSWSPRYDYILATASAD--SRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLL 261 (408)
T ss_dssp CCCSCEEEEEECSSCTTEEEEEETT--SCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEE
T ss_pred CCCCcEEEEEECCCCCcEEEEEcCC--CcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEE
Confidence 3445678999998766555444332 4777777654321 1111 11223467899986555555
Q ss_pred EEeCCCCeEEEEeCCCC
Q psy13635 280 WCDAKTDKIEMIDFDGN 296 (357)
Q Consensus 280 ~~d~~~~~I~~~~~dG~ 296 (357)
.+. ..+.|...++...
T Consensus 262 ~~~-~dg~i~vwd~~~~ 277 (408)
T 4a11_B 262 TVG-TDNRMRLWNSSNG 277 (408)
T ss_dssp EEE-TTSCEEEEETTTC
T ss_pred Eec-CCCeEEEEECCCC
Confidence 554 5678888887653
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.0049 Score=55.74 Aligned_cols=237 Identities=9% Similarity=0.003 Sum_probs=134.8
Q ss_pred cCCCCeEEEEEe-CCcEEEEEcCCC--CcceEeccCCCcEEEEEEEcc-CCEEEEEeCCCCeEEEEEcCCCCcceeEEEE
Q psy13635 37 HHVAAQMLLFAT-SKDIRIANLSRP--LKPVTIIKDLEEGAAIDYYYK-KSMVCWTDHGTEMISCCTFDGNNVGSKHNVI 112 (357)
Q Consensus 37 ~~~~~~~l~~~~-~~~i~~~~~~~~--~~~~~~~~~~~~~~~i~~d~~-~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~ 112 (357)
-++...+|+.+. ...|+..++.+. ..............++++.+. ++.++.+-..++.|...++..... ......
T Consensus 19 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~ 97 (379)
T 3jrp_A 19 LDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW-SQIAVH 97 (379)
T ss_dssp ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEE-EEEEEE
T ss_pred EcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCce-eEeeee
Confidence 344555666665 456888887642 111222334556789999765 144444545567788888776520 012233
Q ss_pred eCCcCCceeEEEEcCC-CeEEEEeCCCCEEEEEEcCCCc--eEEEEecCCCCcceeeeeccCcccccCCceEEEeCC---
Q psy13635 113 TNGLITPDGLAIDWLT-EKLYWTDSETNKLEVSSLDGKK--RKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWV--- 186 (357)
Q Consensus 113 ~~~~~~p~glavd~~~-~~ly~td~~~~~I~~~~~~g~~--~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~--- 186 (357)
.........+++.+.. +.++++-...+.|...++.... ........ ......+++.+.
T Consensus 98 ~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 98 AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH----------------AIGVNSASWAPATIE 161 (379)
T ss_dssp CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECC----------------TTCEEEEEECCCC--
T ss_pred cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCC----------------CCceEEEEEcCcccc
Confidence 3344567889998762 4555565667899999887652 22222111 123456667664
Q ss_pred ---------CCeEEEEeCCCCeEEEEEcCCCc-eE---EEecCCCCCceEEEEeCC---CCEEEEEeCCCCCCeEEEEec
Q psy13635 187 ---------ARNLYWTDTGTDRIEVCRLEGTH-RK---VLVNTDLVEPRAITLSPA---HGYLFWSDWNEKRPKIERSLL 250 (357)
Q Consensus 187 ---------~~~lY~td~~~~~I~~~~~~g~~-~~---~~~~~~~~~P~giavd~~---~g~Ly~~d~~~~~~~I~~~~~ 250 (357)
++.++++....+.|...++.... .. ............++++|. ...|+.+... +.|...++
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d---g~i~iwd~ 238 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD---RTCIIWTQ 238 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT---SCEEEEEE
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCC---CEEEEEeC
Confidence 45566666666778888776432 11 122223456789999987 3444444443 46766666
Q ss_pred CCCc---eEEEeeC--CCCCceEEEEecCCCEEEEEeCCCCeEEEEeCC
Q psy13635 251 NGGE---RVLLVKD--RLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFD 294 (357)
Q Consensus 251 dg~~---~~~~~~~--~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~d 294 (357)
+... ...+... .......+++++.+..|+.+.. .+.|...+.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~iw~~~ 286 (379)
T 3jrp_A 239 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG-DNKVTLWKEN 286 (379)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEES-SSSEEEEEEE
T ss_pred CCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecC-CCcEEEEeCC
Confidence 6542 2233221 2234578899876666666554 5667666654
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=98.11 E-value=0.0048 Score=55.51 Aligned_cols=272 Identities=7% Similarity=-0.048 Sum_probs=153.7
Q ss_pred CeEEEEE-eCCcEEEEEcCCCCcceEecc-----CCCcEEEEEEEccC---CEEEEEeCCCCeEEEEEcCCCCcceeEEE
Q psy13635 41 AQMLLFA-TSKDIRIANLSRPLKPVTIIK-----DLEEGAAIDYYYKK---SMVCWTDHGTEMISCCTFDGNNVGSKHNV 111 (357)
Q Consensus 41 ~~~l~~~-~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~i~~d~~~---~~ly~~d~~~~~I~~~~~~g~~~~~~~~~ 111 (357)
.+.++.+ ....|+..++........+.. ......++++.+.. +.++.+-..++.|...++.... ....
T Consensus 34 ~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~---~~~~ 110 (366)
T 3k26_A 34 DPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ---CIKH 110 (366)
T ss_dssp SCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCC---EEEE
T ss_pred CceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhce---Eeee
Confidence 3334443 355688888875333322221 23568899998863 4666676677889999887653 2334
Q ss_pred EeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEE
Q psy13635 112 ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLY 191 (357)
Q Consensus 112 ~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY 191 (357)
+...-.....+++.+.++.++++-...+.|...++............ ...-..+..+++++.+..|+
T Consensus 111 ~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~ 177 (366)
T 3k26_A 111 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV-------------EGHRDEVLSADYDLLGEKIM 177 (366)
T ss_dssp EESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECST-------------TSCSSCEEEEEECTTSSEEE
T ss_pred ecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccc-------------ccccCceeEEEECCCCCEEE
Confidence 44445678889998756666667667889999998765443332110 01113567888887665555
Q ss_pred EEeCCCCeEEEEEcCCCceEEE----------------------------ecCCCCCceEEEEeCCCCEEEEEeCCCCCC
Q psy13635 192 WTDTGTDRIEVCRLEGTHRKVL----------------------------VNTDLVEPRAITLSPAHGYLFWSDWNEKRP 243 (357)
Q Consensus 192 ~td~~~~~I~~~~~~g~~~~~~----------------------------~~~~~~~P~giavd~~~g~Ly~~d~~~~~~ 243 (357)
. -...+.|...++........ ..........++++ ...|..+... +
T Consensus 178 ~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d---~ 251 (366)
T 3k26_A 178 S-CGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCE---N 251 (366)
T ss_dssp E-EETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSS---S
T ss_pred E-ecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecC---C
Confidence 4 44457888888764321100 00022345677777 3444444333 4
Q ss_pred eEEEEecCCCce--------------EEEeeCCCCCceEEEEecC-CCEEEEEeCCCCeEEEEeCCCCCe----EEEecC
Q psy13635 244 KIERSLLNGGER--------------VLLVKDRLGWPNGITLDVD-NEKLYWCDAKTDKIEMIDFDGNNR----RELINE 304 (357)
Q Consensus 244 ~I~~~~~dg~~~--------------~~~~~~~l~~P~giaid~~-~~~lY~~d~~~~~I~~~~~dG~~~----~~i~~~ 304 (357)
.|...++..... .......-.....+++.+. ++++.++-...+.|...+.+.... ...+..
T Consensus 252 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 331 (366)
T 3k26_A 252 AIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTH 331 (366)
T ss_dssp EEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECC
T ss_pred EEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcc
Confidence 677666654322 1122222234556777654 144455556678899999875431 112222
Q ss_pred C--CCceEEEEEE-CCEEEEEeCCCCeEEEEeC
Q psy13635 305 N--LPHVFGISLL-GDYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 305 ~--~~~p~gia~~-~~~ly~td~~~~~I~~~~~ 334 (357)
. ......+++. ++.+.++-...+.|+..+.
T Consensus 332 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 332 HKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred cccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 2 3456778876 3444445445567766554
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=0.013 Score=59.77 Aligned_cols=263 Identities=11% Similarity=0.011 Sum_probs=153.8
Q ss_pred eEEEEEeCCcEEEEEcCCCCcceEecc-----C--CCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeC
Q psy13635 42 QMLLFATSKDIRIANLSRPLKPVTIIK-----D--LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN 114 (357)
Q Consensus 42 ~~l~~~~~~~i~~~~~~~~~~~~~~~~-----~--~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 114 (357)
..++-+....|.+++... ..+..... . .....++..|. ++.||+.. ..+.|.+++..... .......
T Consensus 322 ~lWigt~~~Gl~~~~~~~-~~~~~~~~~~~~~~l~~~~V~~i~~d~-~g~lWiGt-~~~Gl~~~~~~~~~---~~~~~~~ 395 (795)
T 4a2l_A 322 GMWLGTYFGGLNYYHPIR-NRFKNIRNIPYKNSLSDNVVSCIVEDK-DKNLWIGT-NDGGLNLYNPITQR---FTSYTLQ 395 (795)
T ss_dssp CEEEEESSSCEEEECGGG-GSSEEECCCTTSSSCSCSSEEEEEECT-TSCEEEEE-SSSCEEEECTTTCC---EEEECCC
T ss_pred CEEEEECCCCeEEeCCCc-ccceEEcCCCCCCCCCCCeeEEEEECC-CCCEEEEE-CCCCeEEEcCCCCc---EEEEecC
Confidence 333333345677776544 22332211 1 23467887775 56676654 34468888776543 1222111
Q ss_pred ------C--cCCceeEEEEcCCCe-EEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeC
Q psy13635 115 ------G--LITPDGLAIDWLTEK-LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDW 185 (357)
Q Consensus 115 ------~--~~~p~glavd~~~~~-ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~ 185 (357)
+ .....+++.|. .++ ||+... .+.|.+++.++...+.+.... +. + .......++.|
T Consensus 396 ~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~-~~Gl~~~d~~~~~~~~~~~~~---~~-l--------~~~~v~~i~~d- 460 (795)
T 4a2l_A 396 EDESARGIGSNNIKAVYVDE-KKSLVYIGTH-AGGLSILHRNSGQVENFNQRN---SQ-L--------VNENVYAILPD- 460 (795)
T ss_dssp ------CCSCSCEEEEEEET-TTTEEEEEET-TTEEEEEETTTCCEEEECTTT---SC-C--------SCSCEEEEEEC-
T ss_pred CCCcccCCCCccEEEEEEcC-CCCEEEEEeC-cCceeEEeCCCCcEEEeecCC---CC-c--------CCCeeEEEEEC-
Confidence 1 24567888884 677 666543 456888888765444332110 00 0 11245678888
Q ss_pred CCCeEEEEeCCCCeEEEEEcCCCceEEEecC----C--CCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEe
Q psy13635 186 VARNLYWTDTGTDRIEVCRLEGTHRKVLVNT----D--LVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLV 259 (357)
Q Consensus 186 ~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~----~--~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~ 259 (357)
..++||++.. +.+.+++++.......... . ......+..|+ .|.||++..+ .+.+.+.++... .+.
T Consensus 461 ~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWigt~~----Gl~~~~~~~~~~-~~~ 532 (795)
T 4a2l_A 461 GEGNLWLGTL--SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS-HKRLWIGGEE----GLSVFKQEGLDI-QKA 532 (795)
T ss_dssp SSSCEEEEES--SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT-TCCEEEEESS----CEEEEEEETTEE-EEC
T ss_pred CCCCEEEEec--CceeEEeCCCCeEEEccccccccccCCceEEEEEECC-CCCEEEEeCC----ceEEEeCCCCeE-EEe
Confidence 4678888776 4588888876544433221 1 24567888996 5889888763 688888765543 222
Q ss_pred e----CCC--CCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEec-CCC--CceEEEEEE-CCEEEEEeCCCCeE
Q psy13635 260 K----DRL--GWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELIN-ENL--PHVFGISLL-GDYVYWTDWQRRSI 329 (357)
Q Consensus 260 ~----~~l--~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~-~~~--~~p~gia~~-~~~ly~td~~~~~I 329 (357)
. .++ ....+|..| .+++||++..+ .+.+++.+....+.+-. .++ ....++..+ +|.||++. .+.|
T Consensus 533 ~~~~~~~l~~~~i~~i~~d-~~g~lWigT~~--Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~Gl 607 (795)
T 4a2l_A 533 SILPVSNVTKLFTNCIYEA-SNGIIWVGTRE--GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST--NRGI 607 (795)
T ss_dssp CCSCSCGGGGSCEEEEEEC-TTSCEEEEESS--CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE--TTEE
T ss_pred cCCCCCCCCCCeeEEEEEC-CCCCEEEEeCC--CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc--CCce
Confidence 1 111 235688888 67889888754 68888886654433322 122 245677777 58888876 4578
Q ss_pred EEEeCccCc
Q psy13635 330 DRVNKITGN 338 (357)
Q Consensus 330 ~~~~~~~g~ 338 (357)
.++++.+++
T Consensus 608 ~~~~~~~~~ 616 (795)
T 4a2l_A 608 SCFNPETEK 616 (795)
T ss_dssp EEEETTTTE
T ss_pred EEEcCCCCc
Confidence 889885444
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.0011 Score=66.97 Aligned_cols=242 Identities=11% Similarity=0.118 Sum_probs=142.6
Q ss_pred EeecCCCCeEEEEEeC------CcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCC-------------Ce
Q psy13635 34 ALSHHVAAQMLLFATS------KDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGT-------------EM 94 (357)
Q Consensus 34 ~~~~~~~~~~l~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~-------------~~ 94 (357)
+.+-++....|.++.. ..|+.+|+.++.......... ...++++.++ +.||++.... ..
T Consensus 167 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~-~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~ 244 (741)
T 1yr2_A 167 AWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWV-KFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQT 244 (741)
T ss_dssp EEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEE-ESCCCEESTT-SEEEEEECCCC--------CCCCCE
T ss_pred eEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCc-eeccEEEECC-CEEEEEEecCcccccccccCCCCCE
Confidence 3455566667777663 369999998854333222111 1136778888 8998886432 35
Q ss_pred EEEEEcCCCCcceeEEEEeCCcC---CceeEEEEcCCCeEEEEeC----CCCEEEEEEcCCC--c-eEEEEecCCCCcce
Q psy13635 95 ISCCTFDGNNVGSKHNVITNGLI---TPDGLAIDWLTEKLYWTDS----ETNKLEVSSLDGK--K-RKVLYWEDIDQPRA 164 (357)
Q Consensus 95 I~~~~~~g~~~~~~~~~~~~~~~---~p~glavd~~~~~ly~td~----~~~~I~~~~~~g~--~-~~~~~~~~~~~p~~ 164 (357)
|++.++.+.. ....++...-. ...++++.+.++.|+++.. ....|+..++++. . .+.+....
T Consensus 245 v~~~~lgt~~--~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~------ 316 (741)
T 1yr2_A 245 VWLHRLGTPQ--SADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDL------ 316 (741)
T ss_dssp EEEEETTSCG--GGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSS------
T ss_pred EEEEECCCCc--hhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCC------
Confidence 8888886543 11223333222 2457888887777877653 2468998888765 3 33333111
Q ss_pred eeeeccCcccccCCceEEEeCCCCeEEEEeCC---CCeEEEEEcCC--CceEEEecCCCCCceEEEEeCCCCEEEEEeCC
Q psy13635 165 IASYKLPTIEVEHPDGVAVDWVARNLYWTDTG---TDRIEVCRLEG--THRKVLVNTDLVEPRAITLSPAHGYLFWSDWN 239 (357)
Q Consensus 165 i~~~~~~~~~~~~p~glavD~~~~~lY~td~~---~~~I~~~~~~g--~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~ 239 (357)
...... +++.++.||+.... ..+|.++++++ ...+.++...-....+++++ ++.|+++...
T Consensus 317 -----------~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~ 382 (741)
T 1yr2_A 317 -----------KAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIH 382 (741)
T ss_dssp -----------SSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEE
T ss_pred -----------CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEE
Confidence 011111 34567888876542 35799999887 34455554433334566666 5778877654
Q ss_pred CCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeC---CCCeEEEEeCCCCCeE
Q psy13635 240 EKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDA---KTDKIEMIDFDGNNRR 299 (357)
Q Consensus 240 ~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~---~~~~I~~~~~dG~~~~ 299 (357)
....+|+..+++|.....+.........+++.++.+..|+++-. ..+.|+.+++++...+
T Consensus 383 dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~ 445 (741)
T 1yr2_A 383 DAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTT 445 (741)
T ss_dssp TTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEE
T ss_pred CCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence 32358888888877555443222334567777766666765432 3367899998765543
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0047 Score=54.29 Aligned_cols=252 Identities=10% Similarity=0.006 Sum_probs=144.7
Q ss_pred CCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCC
Q psy13635 69 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG 148 (357)
Q Consensus 69 ~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g 148 (357)
......++++ +.++.|+ +-..++.|...++++.. ........-.....+++++.++.|+. -..++.|...++..
T Consensus 17 h~~~v~~~~~-~~~~~l~-s~~~dg~v~vw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~~~~~~ 90 (313)
T 3odt_A 17 HDQDVRDVVA-VDDSKVA-SVSRDGTVRLWSKDDQW---LGTVVYTGQGFLNSVCYDSEKELLLF-GGKDTMINGVPLFA 90 (313)
T ss_dssp CSSCEEEEEE-EETTEEE-EEETTSEEEEEEESSSE---EEEEEEECSSCEEEEEEETTTTEEEE-EETTSCEEEEETTC
T ss_pred CCCCcEEEEe-cCCCEEE-EEEcCCcEEEEECCCCE---EEEEeecCCccEEEEEECCCCCEEEE-ecCCCeEEEEEeee
Confidence 3456778888 6566655 44556788888886653 23344444567889999986555544 44567788777654
Q ss_pred Cce-E-EEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEE
Q psy13635 149 KKR-K-VLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITL 226 (357)
Q Consensus 149 ~~~-~-~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giav 226 (357)
... + ..... ..-.....++++ ++. +++-...+.|...+ .+.....+. ........+++
T Consensus 91 ~~~~~~~~~~~---------------~~~~~i~~~~~~--~~~-l~~~~~d~~i~~~d-~~~~~~~~~-~~~~~v~~~~~ 150 (313)
T 3odt_A 91 TSGEDPLYTLI---------------GHQGNVCSLSFQ--DGV-VISGSWDKTAKVWK-EGSLVYNLQ-AHNASVWDAKV 150 (313)
T ss_dssp CTTSCC-CEEC---------------CCSSCEEEEEEE--TTE-EEEEETTSEEEEEE-TTEEEEEEE-CCSSCEEEEEE
T ss_pred cCCCCcccchh---------------hcccCEEEEEec--CCE-EEEEeCCCCEEEEc-CCcEEEecc-cCCCceeEEEE
Confidence 321 1 00000 011234556664 344 44545557788777 443333332 33456678888
Q ss_pred eC-CCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCC
Q psy13635 227 SP-AHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINEN 305 (357)
Q Consensus 227 d~-~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~ 305 (357)
.+ ....++.+... +.|...+. +.....+....-.....+++.+ ++. +++-...+.|...+.............
T Consensus 151 ~~~~~~~l~~~~~d---~~i~i~d~-~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~ 224 (313)
T 3odt_A 151 VSFSENKFLTASAD---KTIKLWQN-DKVIKTFSGIHNDVVRHLAVVD-DGH-FISCSNDGLIKLVDMHTGDVLRTYEGH 224 (313)
T ss_dssp EETTTTEEEEEETT---SCEEEEET-TEEEEEECSSCSSCEEEEEEEE-TTE-EEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred ccCCCCEEEEEECC---CCEEEEec-CceEEEEeccCcccEEEEEEcC-CCe-EEEccCCCeEEEEECCchhhhhhhhcC
Confidence 77 44555555444 46766662 2222222222344567888874 556 445556778999998654443333334
Q ss_pred CCceEEEEEEC-CEEEEEeCCCCeEEEEeCccCceeEEEecccCCceee
Q psy13635 306 LPHVFGISLLG-DYVYWTDWQRRSIDRVNKITGNDREVIIERSCTGVTR 353 (357)
Q Consensus 306 ~~~p~gia~~~-~~ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~i 353 (357)
......+++.. +. +++-...+.|...+..+++....+.........+
T Consensus 225 ~~~i~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~ 272 (313)
T 3odt_A 225 ESFVYCIKLLPNGD-IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSV 272 (313)
T ss_dssp SSCEEEEEECTTSC-EEEEETTSEEEEECTTTCCEEEEEECSSSCEEEE
T ss_pred CceEEEEEEecCCC-EEEEecCCEEEEEECCCCceeEEEeccCceEEEE
Confidence 55667788874 44 4455566888888887787776665544344333
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.0059 Score=55.20 Aligned_cols=249 Identities=7% Similarity=0.034 Sum_probs=138.3
Q ss_pred CCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcC-CCeEEEEeCCCCEEEEEEcCC
Q psy13635 70 LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL-TEKLYWTDSETNKLEVSSLDG 148 (357)
Q Consensus 70 ~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~-~~~ly~td~~~~~I~~~~~~g 148 (357)
.....++++++.+..|..+ ..++.|...++++... .....+...-.....+++.+. .+.++++-..++.|...+++.
T Consensus 11 ~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 88 (379)
T 3jrp_A 11 NELIHDAVLDYYGKRLATC-SSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 88 (379)
T ss_dssp CCCEEEEEECSSSSEEEEE-ETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEET
T ss_pred cccEEEEEEcCCCCEEEEE-ECCCcEEEEecCCCcc-eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCC
Confidence 3467788898876666544 4456777777764320 112233333445677888654 145555555678888888876
Q ss_pred CceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCC-CeEEEEeCCCCeEEEEEcCCC--ceEEEecCCCCCceEEE
Q psy13635 149 KKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVA-RNLYWTDTGTDRIEVCRLEGT--HRKVLVNTDLVEPRAIT 225 (357)
Q Consensus 149 ~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~-~~lY~td~~~~~I~~~~~~g~--~~~~~~~~~~~~P~gia 225 (357)
.....+... ...-.....+++.+.. +.++++-...+.|...++... ...............++
T Consensus 89 ~~~~~~~~~--------------~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~ 154 (379)
T 3jrp_A 89 GRWSQIAVH--------------AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 154 (379)
T ss_dssp TEEEEEEEE--------------CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEE
T ss_pred CceeEeeee--------------cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEE
Confidence 542222111 0111246678888662 444445555678888887754 22223333445678899
Q ss_pred EeCC-------------CCEEEEEeCCCCCCeEEEEecCCCceE-E---EeeCCCCCceEEEEecCC--CEEEEEeCCCC
Q psy13635 226 LSPA-------------HGYLFWSDWNEKRPKIERSLLNGGERV-L---LVKDRLGWPNGITLDVDN--EKLYWCDAKTD 286 (357)
Q Consensus 226 vd~~-------------~g~Ly~~d~~~~~~~I~~~~~dg~~~~-~---~~~~~l~~P~giaid~~~--~~lY~~d~~~~ 286 (357)
++|. ...++.+... +.|...++...... . .+...-....++++.+.. +.++++-...+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg 231 (379)
T 3jrp_A 155 WAPATIEEDGEHNGTKESRKFVTGGAD---NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 231 (379)
T ss_dssp ECCCC----------CTTCEEEEEETT---SCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred EcCccccccccccCCCCCCEEEEEeCC---CeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCC
Confidence 9984 3445444443 46666666543221 1 122233456789998653 56666655667
Q ss_pred eEEEEeCCCCC---eEEEecC--CCCceEEEEEE-CC-EEEEEeCCCCeEEEEeCccCc
Q psy13635 287 KIEMIDFDGNN---RRELINE--NLPHVFGISLL-GD-YVYWTDWQRRSIDRVNKITGN 338 (357)
Q Consensus 287 ~I~~~~~dG~~---~~~i~~~--~~~~p~gia~~-~~-~ly~td~~~~~I~~~~~~~g~ 338 (357)
.|...+.+... ...+... .......+++. .+ .|+.+. ..+.|+..+...+.
T Consensus 232 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 232 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG-GDNKVTLWKENLEG 289 (379)
T ss_dssp CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE-SSSSEEEEEEEETT
T ss_pred EEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEec-CCCcEEEEeCCCCC
Confidence 88888876542 2233321 22345667775 34 444444 45777666654333
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=98.07 E-value=0.0059 Score=55.20 Aligned_cols=253 Identities=9% Similarity=0.026 Sum_probs=149.7
Q ss_pred cCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcC
Q psy13635 68 KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD 147 (357)
Q Consensus 68 ~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~ 147 (357)
.......++++++.+. +..+-..++.|+..+..... ....+...-.....+++.+.++ +..+-...+.|...++.
T Consensus 53 gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~---~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~v~iw~~~ 127 (340)
T 1got_B 53 GHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTN---KVHAIPLRSSWVMTCAYAPSGN-YVACGGLDNICSIYNLK 127 (340)
T ss_dssp CCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCC---EEEEEECSSSCEEEEEECTTSS-EEEEEETTCEEEEEETT
T ss_pred CCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCC---cceEeecCCccEEEEEECCCCC-EEEEEeCCCeEEEEECc
Confidence 3455788999987554 44555667888888877653 2333343445577889997554 44555567888888876
Q ss_pred CCce--EEE-EecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEE
Q psy13635 148 GKKR--KVL-YWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAI 224 (357)
Q Consensus 148 g~~~--~~~-~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~gi 224 (357)
.... ... ...+ .......+++.+ .+.+ ++....+.|...++..................+
T Consensus 128 ~~~~~~~~~~~~~~---------------h~~~v~~~~~~~-~~~l-~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~ 190 (340)
T 1got_B 128 TREGNVRVSRELAG---------------HTGYLSCCRFLD-DNQI-VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL 190 (340)
T ss_dssp TCSBSCEEEEEEEC---------------CSSCEEEEEEEE-TTEE-EEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred cCCCcceeEEEecC---------------CCccEEEEEECC-CCcE-EEEECCCcEEEEECCCCcEEEEEcCCCCceEEE
Confidence 4321 111 0001 001234455543 3444 455556788888877554444443344567899
Q ss_pred EEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEec-
Q psy13635 225 TLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELIN- 303 (357)
Q Consensus 225 avd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~- 303 (357)
+++|... ++.+-... +.|...++........+...-....++++.+.+ ..+.+-...+.|...++..........
T Consensus 191 ~~~~~~~-~l~sg~~d--~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~~ 266 (340)
T 1got_B 191 SLAPDTR-LFVSGACD--ASAKLWDVREGMCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQELMTYSH 266 (340)
T ss_dssp EECTTSS-EEEEEETT--SCEEEEETTTCSEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EECCCCC-EEEEEeCC--CcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCcEEEEEcc
Confidence 9998644 44444332 578878876555444444444567899998654 445555567789999886544322222
Q ss_pred CC-CCceEEEEEE-CCEEEEEeCCCCeEEEEeCccCceeEEEecc
Q psy13635 304 EN-LPHVFGISLL-GDYVYWTDWQRRSIDRVNKITGNDREVIIER 346 (357)
Q Consensus 304 ~~-~~~p~gia~~-~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~ 346 (357)
.. ......+++. .+.+..+-...+.|...+..+++....+...
T Consensus 267 ~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h 311 (340)
T 1got_B 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 311 (340)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred CCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecC
Confidence 11 2235667776 3556666666678888887666666555443
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=98.07 E-value=0.0057 Score=54.79 Aligned_cols=258 Identities=9% Similarity=0.007 Sum_probs=150.3
Q ss_pred CCcEEEEEcCCCC-c----ceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEE
Q psy13635 49 SKDIRIANLSRPL-K----PVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLA 123 (357)
Q Consensus 49 ~~~i~~~~~~~~~-~----~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~gla 123 (357)
...|+..++.+.. . .............+++.+.+..| .+-..++.|+..++.... ....+...-.....++
T Consensus 39 D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l-~s~s~D~~v~~wd~~~~~---~~~~~~~h~~~v~~~~ 114 (319)
T 3frx_A 39 DKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYA-LSASWDKTLRLWDVATGE---TYQRFVGHKSDVMSVD 114 (319)
T ss_dssp TSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEE-EEEETTSEEEEEETTTTE---EEEEEECCSSCEEEEE
T ss_pred CccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEE-EEEeCCCEEEEEECCCCC---eeEEEccCCCcEEEEE
Confidence 4557766664311 1 11222344567788998865554 455566888888887653 2333444445678899
Q ss_pred EEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCC-----CCeEEEEeCCCC
Q psy13635 124 IDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWV-----ARNLYWTDTGTD 198 (357)
Q Consensus 124 vd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~-----~~~lY~td~~~~ 198 (357)
+++ .+.+.++-...+.|...++.+.....+.... .....+++.+. .+.++++....+
T Consensus 115 ~~~-~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~-----------------~~v~~~~~~~~~~~~~~~~~l~s~~~d~ 176 (319)
T 3frx_A 115 IDK-KASMIISGSRDKTIKVWTIKGQCLATLLGHN-----------------DWVSQVRVVPNEKADDDSVTIISAGNDK 176 (319)
T ss_dssp ECT-TSCEEEEEETTSCEEEEETTSCEEEEECCCS-----------------SCEEEEEECCC------CCEEEEEETTS
T ss_pred EcC-CCCEEEEEeCCCeEEEEECCCCeEEEEeccC-----------------CcEEEEEEccCCCCCCCccEEEEEeCCC
Confidence 986 4555666667889999998876544432110 12233444332 234555666667
Q ss_pred eEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEE
Q psy13635 199 RIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKL 278 (357)
Q Consensus 199 ~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~l 278 (357)
.|...++..................++++|.+..|..+... +.|...++........+.. -.....+++.+.+..|
T Consensus 177 ~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d---g~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l 252 (319)
T 3frx_A 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKD---GEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWL 252 (319)
T ss_dssp CEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETT---CEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEE
T ss_pred EEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEE
Confidence 88888887654444343444567899999875555555443 5888888876654444432 2456889998776666
Q ss_pred EEEeCCCCeEEEEeCCCCCeEEEecCC--------CCceEEEEEE-CCEEEEEeCCCCeEEEEeC
Q psy13635 279 YWCDAKTDKIEMIDFDGNNRRELINEN--------LPHVFGISLL-GDYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 279 Y~~d~~~~~I~~~~~dG~~~~~i~~~~--------~~~p~gia~~-~~~ly~td~~~~~I~~~~~ 334 (357)
..+.. ..+...+.+........... -.....+++. +|...++-...+.|+..+.
T Consensus 253 a~~~~--~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~ 315 (319)
T 3frx_A 253 AAATA--TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315 (319)
T ss_dssp EEEET--TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred EEEcC--CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEE
Confidence 66553 34666666554332222111 1234567775 3444555555667665554
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.004 Score=63.30 Aligned_cols=264 Identities=9% Similarity=-0.022 Sum_probs=154.3
Q ss_pred CeEEEEEeCCcEEEEEcCCCCcceEec--------c--CCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEE
Q psy13635 41 AQMLLFATSKDIRIANLSRPLKPVTII--------K--DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHN 110 (357)
Q Consensus 41 ~~~l~~~~~~~i~~~~~~~~~~~~~~~--------~--~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~ 110 (357)
...++-+....|.+++.... .+.... . ......++..|. ++.||+... .+.|.+++..+.. ..
T Consensus 324 g~lWigt~~~Gl~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lWigt~-~~Gl~~~~~~~~~----~~ 396 (781)
T 3v9f_A 324 NNIWIGTWGGGINFISNAPP-TFHTWSYSPTQMNESSLSNKVVSSVCDDG-QGKLWIGTD-GGGINVFENGKRV----AI 396 (781)
T ss_dssp CCEEEEEBSSCEEEECSSCC-SCEEEC----CCCSSCCSSSCEEEEEECT-TSCEEEEEB-SSCEEEEETTEEE----EE
T ss_pred CCEEEEecCCeEEEeCCCCC-cceeeccCccccccCCCCCcceEEEEEcC-CCCEEEEeC-CCcEEEEECCCCe----EE
Confidence 33333333667877776542 333221 1 123467787775 577777643 3458887765432 11
Q ss_pred EEe--CC--cCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCC
Q psy13635 111 VIT--NG--LITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWV 186 (357)
Q Consensus 111 ~~~--~~--~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~ 186 (357)
... .+ .....+++.|. .+.||+... .+.+.+++......+.+....+ .......++.| .
T Consensus 397 ~~~~~~~~~~~~v~~i~~d~-~g~lWigt~-~~Gl~~~~~~~~~~~~~~~~~~--------------~~~~v~~i~~d-~ 459 (781)
T 3v9f_A 397 YNKENRELLSNSVLCSLKDS-EGNLWFGTY-LGNISYYNTRLKKFQIIELEKN--------------ELLDVRVFYED-K 459 (781)
T ss_dssp CC-----CCCSBEEEEEECT-TSCEEEEET-TEEEEEECSSSCEEEECCSTTT--------------CCCCEEEEEEC-T
T ss_pred EccCCCCCCCcceEEEEECC-CCCEEEEec-cCCEEEEcCCCCcEEEeccCCC--------------CCCeEEEEEEC-C
Confidence 111 11 13466788884 677877653 3568888775443332211000 11245678888 5
Q ss_pred CCeEEEEeCCCCeEEEEEcCCCceEEEecCC-----CCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEee-
Q psy13635 187 ARNLYWTDTGTDRIEVCRLEGTHRKVLVNTD-----LVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVK- 260 (357)
Q Consensus 187 ~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~-----~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~- 260 (357)
.++||++.. +.+.++++.+.......... ...+.+|+.|+ .|.|+++..+ ..+.+.+.++...+.+..
T Consensus 460 ~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWigt~~---~Gl~~~~~~~~~~~~~~~~ 533 (781)
T 3v9f_A 460 NKKIWIGTH--AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDS-EGRFWIGTFG---GGVGIYTPDMQLVRKFNQY 533 (781)
T ss_dssp TSEEEEEET--TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECT-TCCEEEEESS---SCEEEECTTCCEEEEECTT
T ss_pred CCCEEEEEC--CceEEEeCCCCeEEecccCcccccccceeEEEEEcC-CCCEEEEEcC---CCEEEEeCCCCeEEEccCC
Confidence 678888766 56899988765443333211 24678899996 5899988764 368888887665544432
Q ss_pred CCC--CCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEec-CCC--CceEEEEEE-CCEEEEEeCCCCeEEEEeC
Q psy13635 261 DRL--GWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELIN-ENL--PHVFGISLL-GDYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 261 ~~l--~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~-~~~--~~p~gia~~-~~~ly~td~~~~~I~~~~~ 334 (357)
.++ ....+|..| .+++||++.. .+-+.+++......+.+-. .++ ....++..+ +|.||++. .+.|.++++
T Consensus 534 ~~l~~~~i~~i~~d-~~g~lWi~T~-~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t--~~Gl~~~~~ 609 (781)
T 3v9f_A 534 EGFCSNTINQIYRS-SKGQMWLATG-EGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAST--NTGISCYIT 609 (781)
T ss_dssp TTCSCSCEEEEEEC-TTSCEEEEET-TEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEEC--SSCEEEEET
T ss_pred CCCCCCeeEEEEEC-CCCCEEEEEC-CCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEc--CCceEEEEC
Confidence 222 235688888 6788988875 4443888876554433322 122 235678887 57888874 345888887
Q ss_pred ccCc
Q psy13635 335 ITGN 338 (357)
Q Consensus 335 ~~g~ 338 (357)
.+++
T Consensus 610 ~~~~ 613 (781)
T 3v9f_A 610 SKKC 613 (781)
T ss_dssp TTTE
T ss_pred CCCc
Confidence 4443
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00013 Score=73.46 Aligned_cols=285 Identities=11% Similarity=0.038 Sum_probs=155.9
Q ss_pred eEEEEEeCCcEEEEEcCCCCcceEeccCCC----cEEEEEEEccCCEEEEEeCC--------CCeEEEEEcCCCCcceeE
Q psy13635 42 QMLLFATSKDIRIANLSRPLKPVTIIKDLE----EGAAIDYYYKKSMVCWTDHG--------TEMISCCTFDGNNVGSKH 109 (357)
Q Consensus 42 ~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~i~~d~~~~~ly~~d~~--------~~~I~~~~~~g~~~~~~~ 109 (357)
.+++.+....|+..|+.++.. ..+..... ....+++++++..|.++... .+.|+..++++......
T Consensus 28 ~~~~~~~d~~i~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~- 105 (719)
T 1z68_A 28 EYLHQSADNNIVLYNIETGQS-YTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG- 105 (719)
T ss_dssp EEEEECTTSCEEEEESSSCCE-EEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-
T ss_pred eEEEEcCCCCEEEEEcCCCcE-EEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc-
Confidence 344434456799999987543 33332211 26688899988888776541 36799999887741000
Q ss_pred EEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeee-e--ccC-cccccCCceEEEeC
Q psy13635 110 NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIAS-Y--KLP-TIEVEHPDGVAVDW 185 (357)
Q Consensus 110 ~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~-~--~~~-~~~~~~p~glavD~ 185 (357)
..+. .....+++.|.++.|.++. .+.|+..++++.....+...+.. ..+.- . .+. .+-+....++++.|
T Consensus 106 ~~l~---~~~~~~~~SPDG~~la~~~--~~~i~~~~~~~g~~~~l~~~~~~--~~v~~g~~~~v~~ee~~~~~~~~~wSP 178 (719)
T 1z68_A 106 NELP---RPIQYLCWSPVGSKLAYVY--QNNIYLKQRPGDPPFQITFNGRE--NKIFNGIPDWVYEEEMLATKYALWWSP 178 (719)
T ss_dssp SCCC---SSBCCEEECSSTTCEEEEE--TTEEEEESSTTSCCEECCCCCBT--TTEEESSCCHHHHHHTTCSSCCEEECT
T ss_pred eecC---cccccceECCCCCEEEEEE--CCeEEEEeCCCCCcEEEecCCCc--CCeEcccccceeeeecccCcccEEECC
Confidence 1121 3467789999888888875 46899988876655443221110 00000 0 000 00012235788887
Q ss_pred CCCeEEEEeCCC---------------------------------CeEEEEEcCCCceE---EEec-----CCCCCceEE
Q psy13635 186 VARNLYWTDTGT---------------------------------DRIEVCRLEGTHRK---VLVN-----TDLVEPRAI 224 (357)
Q Consensus 186 ~~~~lY~td~~~---------------------------------~~I~~~~~~g~~~~---~~~~-----~~~~~P~gi 224 (357)
.+..|+++.... ..|...+.++.... .+.. ........+
T Consensus 179 DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (719)
T 1z68_A 179 NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWL 258 (719)
T ss_dssp TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEE
T ss_pred CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEe
Confidence 777787653211 15667777665431 1110 112234688
Q ss_pred EEeCCCCEEEEE--eCCCCCCeEEEEe----cCCCceEEEee----CCCCCc-----eEEEEecCCCEEEE-Ee--CCCC
Q psy13635 225 TLSPAHGYLFWS--DWNEKRPKIERSL----LNGGERVLLVK----DRLGWP-----NGITLDVDNEKLYW-CD--AKTD 286 (357)
Q Consensus 225 avd~~~g~Ly~~--d~~~~~~~I~~~~----~dg~~~~~~~~----~~l~~P-----~giaid~~~~~lY~-~d--~~~~ 286 (357)
+++|. +++.++ +.......|+..+ .++.....+.. ..-.+. ..+++.+++..|++ +. .+..
T Consensus 259 ~~SpD-~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~ 337 (719)
T 1z68_A 259 TWVTD-ERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYK 337 (719)
T ss_dssp EESSS-SEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCE
T ss_pred EEeCC-CeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCce
Confidence 89987 776665 3222124688888 65543333331 111111 25677766676766 33 2345
Q ss_pred eEEEEeCCCCCeEEEecCCCCceEEEEE-ECCEEEEEeCC------CCeEEEEeCccC
Q psy13635 287 KIEMIDFDGNNRRELINENLPHVFGISL-LGDYVYWTDWQ------RRSIDRVNKITG 337 (357)
Q Consensus 287 ~I~~~~~dG~~~~~i~~~~~~~p~gia~-~~~~ly~td~~------~~~I~~~~~~~g 337 (357)
.|+.++.++...+.+.. .-....++.. +++.||++... ...+++++..+|
T Consensus 338 ~l~~~~~~~~~~~~lt~-~~~~v~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~g 394 (719)
T 1z68_A 338 HIHYIKDTVENAIQITS-GKWEAINIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSY 394 (719)
T ss_dssp EEEEESSCSTTCEECSC-SSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEECSSS
T ss_pred EEEEEECCCCceEeccc-CceEEEEEEEEeCCEEEEEEecCCCCCceEEEEEEeCCCC
Confidence 78888988766544432 2112223222 56888888754 345788876444
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0088 Score=56.22 Aligned_cols=280 Identities=12% Similarity=0.002 Sum_probs=158.7
Q ss_pred EEEEEe-CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCcee
Q psy13635 43 MLLFAT-SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDG 121 (357)
Q Consensus 43 ~l~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~g 121 (357)
+++.+. ...|+..|+............-....++++.+.+ ++++-..++.|...+++... ....+.........
T Consensus 134 ~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~i~vwd~~~~~---~~~~~~~h~~~v~~ 208 (464)
T 3v7d_B 134 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGC---CTHVFEGHNSTVRC 208 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT--EEEEEETTSCEEEEETTTTE---EEEEECCCSSCEEE
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC--EEEEEeCCCCEEEEECCCCc---EEEEECCCCCccEE
Confidence 344433 5679999987644444444466678899997644 55666667889988887653 23344434456677
Q ss_pred EEEEc-CCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCC----------CcceeeeeccCcccccCCceEEEeCCCCeE
Q psy13635 122 LAIDW-LTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDID----------QPRAIASYKLPTIEVEHPDGVAVDWVARNL 190 (357)
Q Consensus 122 lavd~-~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~----------~p~~i~~~~~~~~~~~~p~glavD~~~~~l 190 (357)
+++.+ .++...++-...+.|...++.............. .+..+.. ... ....-.++.+.++.+
T Consensus 209 l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~v~~~~~~~~~l 283 (464)
T 3v7d_B 209 LDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV---LRG--HMASVRTVSGHGNIV 283 (464)
T ss_dssp EEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE---ECC--CSSCEEEEEEETTEE
T ss_pred EEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE---ccC--ccceEEEEcCCCCEE
Confidence 88875 3456666777788898888765432211100000 0000000 000 111112334334444
Q ss_pred EEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEE
Q psy13635 191 YWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGIT 270 (357)
Q Consensus 191 Y~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~gia 270 (357)
+ +....+.|...++..................++++|.+..|+.+... +.|...++........+...-.....++
T Consensus 284 ~-~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d---g~i~vwd~~~~~~~~~~~~h~~~v~~~~ 359 (464)
T 3v7d_B 284 V-SGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD---TTIRIWDLENGELMYTLQGHTALVGLLR 359 (464)
T ss_dssp E-EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETT---SCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred E-EEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCcEEEEEeCCCCcEEEEE
Confidence 4 44445788888887554444444444667899999976677666554 5788888865554444444444567777
Q ss_pred EecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEE--ECCEEEEEeCCCCeEEEEeCccCceeEE
Q psy13635 271 LDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISL--LGDYVYWTDWQRRSIDRVNKITGNDREV 342 (357)
Q Consensus 271 id~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~--~~~~ly~td~~~~~I~~~~~~~g~~~~~ 342 (357)
++ +..| ++-...+.|...+........... .......+++ ++..+.... .+.|...+..+|+....
T Consensus 360 ~~--~~~l-~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~--dg~i~iwd~~~g~~~~~ 427 (464)
T 3v7d_B 360 LS--DKFL-VSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS--ENQFNIYNLRSGKLVHA 427 (464)
T ss_dssp EC--SSEE-EEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE--TTEEEEEETTTCCEEES
T ss_pred Ec--CCEE-EEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec--CCeEEEEECCCCcEEeh
Confidence 74 4444 444556789999887644433222 1212222333 344444443 57888888777776654
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=0.011 Score=55.31 Aligned_cols=264 Identities=12% Similarity=0.058 Sum_probs=145.5
Q ss_pred eEEEEEe-CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCce
Q psy13635 42 QMLLFAT-SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPD 120 (357)
Q Consensus 42 ~~l~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~ 120 (357)
.+++.+. .+.|+..|+.................+++++ +.+.++...++.|...++.... ....+........
T Consensus 144 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~---~~~~~~~h~~~v~ 217 (435)
T 1p22_A 144 QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD---ERVIITGSSDSTVRVWDVNTGE---MLNTLIHHCEAVL 217 (435)
T ss_dssp SEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECC---SSEEEEEETTSCEEEEESSSCC---EEEEECCCCSCEE
T ss_pred CEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEEC---CCEEEEEcCCCeEEEEECCCCc---EEEEEcCCCCcEE
Confidence 3444444 5679999987644444444455567777773 4455566667889988887664 2333333334455
Q ss_pred eEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeE
Q psy13635 121 GLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRI 200 (357)
Q Consensus 121 glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I 200 (357)
.++++ .+ .+++-...+.|...++............ ...-.....+++| ++.|+ +....+.|
T Consensus 218 ~l~~~--~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~-------------~~~~~~v~~~~~~--~~~l~-s~~~dg~i 278 (435)
T 1p22_A 218 HLRFN--NG-MMVTCSKDRSIAVWDMASPTDITLRRVL-------------VGHRAAVNVVDFD--DKYIV-SASGDRTI 278 (435)
T ss_dssp EEECC--TT-EEEEEETTSCEEEEECSSSSCCEEEEEE-------------CCCSSCEEEEEEE--TTEEE-EEETTSEE
T ss_pred EEEEc--CC-EEEEeeCCCcEEEEeCCCCCCceeeeEe-------------cCCCCcEEEEEeC--CCEEE-EEeCCCeE
Confidence 55554 44 5555556788998888654332111000 0011133455553 44444 44556788
Q ss_pred EEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEE
Q psy13635 201 EVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYW 280 (357)
Q Consensus 201 ~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~ 280 (357)
...++..................++++ ...++.+... +.|...++........+........++++| +..| +
T Consensus 279 ~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l-~ 350 (435)
T 1p22_A 279 KVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSD---NTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRI-V 350 (435)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETT---SCEEEEETTTCCEEEEECCCSSCEEEEECC--SSEE-E
T ss_pred EEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCC---CeEEEEECCCCCEEEEEeCCcCcEEEEEec--CCEE-E
Confidence 888887544433333344556677776 3555555544 578888887554444443344445677763 4444 4
Q ss_pred EeCCCCeEEEEeCCCCC---------eEEEecCCCCceEEEEEECCEEEEEeCCCCeEEEEeCccCce
Q psy13635 281 CDAKTDKIEMIDFDGNN---------RRELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGND 339 (357)
Q Consensus 281 ~d~~~~~I~~~~~dG~~---------~~~i~~~~~~~p~gia~~~~~ly~td~~~~~I~~~~~~~g~~ 339 (357)
+-...+.|...+..... .............++++++ ..+++-...+.|...+..++..
T Consensus 351 sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 351 SGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE-FQIVSSSHDDTILIWDFLNDPA 417 (435)
T ss_dssp EEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECS-SCEEECCSSSEEEEEC------
T ss_pred EEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeCC-CEEEEEeCCCEEEEEECCCCCC
Confidence 44456788888864321 2223333344556777744 4455556678888777644443
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.012 Score=59.31 Aligned_cols=240 Identities=12% Similarity=0.124 Sum_probs=140.5
Q ss_pred ccCCEEEEEeCCC----CeEEEEEcC---CCCcceeEEEEeCC-c-----CCceeEEEEcCCCeEEEEeCC--C--CEEE
Q psy13635 80 YKKSMVCWTDHGT----EMISCCTFD---GNNVGSKHNVITNG-L-----ITPDGLAIDWLTEKLYWTDSE--T--NKLE 142 (357)
Q Consensus 80 ~~~~~ly~~d~~~----~~I~~~~~~---g~~~~~~~~~~~~~-~-----~~p~glavd~~~~~ly~td~~--~--~~I~ 142 (357)
+.++++|++-... ..|++.+.+ +.. .+.++..+ + ....++++.|.++.|.++... . ..|+
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~ 192 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTK---GRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVK 192 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCC---CEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCC---CEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEE
Confidence 6688888774432 468898876 443 23332111 1 134578888888888665432 2 3699
Q ss_pred EEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC-------------CCeEEEEEcCCCc
Q psy13635 143 VSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG-------------TDRIEVCRLEGTH 209 (357)
Q Consensus 143 ~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~-------------~~~I~~~~~~g~~ 209 (357)
+.++++.......... . ...+++..+. +.||++... ..+|++.++.+..
T Consensus 193 v~dl~tg~~~~~~~~~----------------~-~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~ 254 (741)
T 1yr2_A 193 FVGVADGKPLADELKW----------------V-KFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQ 254 (741)
T ss_dssp EEETTTCCEEEEEEEE----------------E-ESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCG
T ss_pred EEECCCCCCCCccCCC----------------c-eeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCc
Confidence 9998876543221110 0 1135566666 777776532 2358888876543
Q ss_pred e-EEEecCCCC---CceEEEEeCCCCEEEEEeCCC--CCCeEEEEecCCC--c-eEEEeeCCCCCceEEEEecCCCEEEE
Q psy13635 210 R-KVLVNTDLV---EPRAITLSPAHGYLFWSDWNE--KRPKIERSLLNGG--E-RVLLVKDRLGWPNGITLDVDNEKLYW 280 (357)
Q Consensus 210 ~-~~~~~~~~~---~P~giavd~~~g~Ly~~d~~~--~~~~I~~~~~dg~--~-~~~~~~~~l~~P~giaid~~~~~lY~ 280 (357)
. ..++...-. .-.+++++|.+..|+++.... ....|+..++++. . .+.+... ...-... +++.++.||+
T Consensus 255 ~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~~~~-~~~dg~~l~~ 332 (741)
T 1yr2_A 255 SADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD-LKAQWDF-VDGVGDQLWF 332 (741)
T ss_dssp GGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS-SSSCEEE-EEEETTEEEE
T ss_pred hhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC-CCceEEE-EeccCCEEEE
Confidence 2 222222222 246888998866787776432 1358999998876 4 4444432 2222222 3457888887
Q ss_pred EeC---CCCeEEEEeCCCC--CeEEEecCCCCceEEEEEECCEEEEEeCCCC--eEEEEeCccCceeEEE
Q psy13635 281 CDA---KTDKIEMIDFDGN--NRRELINENLPHVFGISLLGDYVYWTDWQRR--SIDRVNKITGNDREVI 343 (357)
Q Consensus 281 ~d~---~~~~I~~~~~dG~--~~~~i~~~~~~~p~gia~~~~~ly~td~~~~--~I~~~~~~~g~~~~~i 343 (357)
... .+.+|+.++.++. ..+.++...-....+++++++.++++....+ +|+.++. +|+....+
T Consensus 333 ~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~-~g~~~~~l 401 (741)
T 1yr2_A 333 VSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDL-DGKPAGAV 401 (741)
T ss_dssp EECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEET-TSCEEEEC
T ss_pred EECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeC-CCCceeec
Confidence 754 2567999998873 4455654433344577888888888765443 4677776 45544443
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00082 Score=63.21 Aligned_cols=204 Identities=10% Similarity=0.057 Sum_probs=127.2
Q ss_pred CcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEe-CCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCC
Q psy13635 71 EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT-NGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGK 149 (357)
Q Consensus 71 ~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~-~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~ 149 (357)
....+|+|+|.++.+..+...++.|...+++.... ...... ..-....+|++.|.+++++++-+..+.|...++.+.
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~--~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~ 197 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK--PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN 197 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC--CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc--eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC
Confidence 35789999997777777777778888888876541 122211 223457889998777777788888899999999887
Q ss_pred ceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCC
Q psy13635 150 KRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPA 229 (357)
Q Consensus 150 ~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~ 229 (357)
....+..... .......+++++.+ .++++....+.|...+++++....+. .......+++++|.
T Consensus 198 ~~~~~~~~~~--------------~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~~~~~~~-~h~~~v~~v~~~p~ 261 (435)
T 4e54_B 198 ILRVFASSDT--------------INIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGKELWNLR-MHKKKVTHVALNPC 261 (435)
T ss_dssp EEEEEECCSS--------------CSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSCBCCCSB-CCSSCEEEEEECTT
T ss_pred ceeEEeccCC--------------CCccEEEEEECCCC-CEEEEEeCCCcEeeeccCcceeEEEe-cccceEEeeeecCC
Confidence 6655543221 11234568888654 55556666788999999886544332 23345788999987
Q ss_pred CCEEEEEeCCCCCCeEEEEecCCCce-EEEee--CCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCC
Q psy13635 230 HGYLFWSDWNEKRPKIERSLLNGGER-VLLVK--DRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDG 295 (357)
Q Consensus 230 ~g~Ly~~d~~~~~~~I~~~~~dg~~~-~~~~~--~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG 295 (357)
...++.+-... +.|...++..... ..+.. ..-....++++++.+..|..+ ...+.|...+...
T Consensus 262 ~~~~~~s~s~d--~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~-~~D~~i~iwd~~~ 327 (435)
T 4e54_B 262 CDWFLATASVD--QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTT-DQKSEIRVYSASQ 327 (435)
T ss_dssp CSSEEEEEETT--SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEE-ESSSCEEEEESSS
T ss_pred CceEEEEecCc--ceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEE-cCCCEEEEEECCC
Confidence 66566554442 3555555543211 11111 112234677887655555444 4567788877643
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=0.023 Score=57.87 Aligned_cols=267 Identities=8% Similarity=-0.006 Sum_probs=154.3
Q ss_pred EEEEeC-CcEEEEEcCCCCcceEec--cCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCC-----
Q psy13635 44 LLFATS-KDIRIANLSRPLKPVTII--KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNG----- 115 (357)
Q Consensus 44 l~~~~~-~~i~~~~~~~~~~~~~~~--~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~----- 115 (357)
+.++.. ..|.+++..+. ...... .......++..|. ++.||++.. .+.|++++..+.. .......
T Consensus 186 lwigt~~~Gl~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~-~g~lwigt~-~~Gl~~~~~~~~~----~~~~~~~~~~~~ 258 (795)
T 4a2l_A 186 IYIGTSTDGLYTYSITQK-TFEKVIPILGTKQIQAILQQS-PTRIWVATE-GAGLFLINPKTKE----IKNYLHSPSNPK 258 (795)
T ss_dssp EEEEESSSCEEEEETTTC-CEEECC----CCCEEEEEEEE-TTEEEEEEB-SSCEEEEETTTTE----EEEECCCTTCTT
T ss_pred EEEEECCCCEEEEeCCCC-eEEEecCCCCCCeeEEEEEcC-CCCEEEEEC-CCCeEEEeCCCCe----EEEeecCCCCcc
Confidence 444443 57888887552 232221 1233466777775 677777643 3358888877652 2222211
Q ss_pred ---cCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEE
Q psy13635 116 ---LITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYW 192 (357)
Q Consensus 116 ---~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~ 192 (357)
-.....++.| ..+.|++.... -|.+++........+.... ..+..+ .-.....|..| ..|.|++
T Consensus 259 ~l~~~~i~~i~~d-~~g~lWigt~~--Gl~~~~~~~~~~~~~~~~~-~~~~~l--------~~~~i~~i~~D-~~g~lWi 325 (795)
T 4a2l_A 259 SISSNYIRSLAMD-SQNRLWIGTFN--DLNIYHEGTDSFASYSSNP-VENGSL--------SQRSVRSIFMD-SQGGMWL 325 (795)
T ss_dssp SCSCSBEEEEEEC-TTSCEEEEESS--CEEEEETTTTEEEEECCCT-TSTTSC--------SSSCEEEEEEC-TTSCEEE
T ss_pred ccCCCeEEEEEEc-CCCCEEEEeCC--hhheEcCCCCeEEEEecCC-CCCCCC--------CCCcEEEEEEe-CCcCEEE
Confidence 1336678888 47778876643 5788887655443332111 111111 11346778889 5678887
Q ss_pred EeCCCCeEEEEEcCCCceEEEecC----C--CCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeC-----
Q psy13635 193 TDTGTDRIEVCRLEGTHRKVLVNT----D--LVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKD----- 261 (357)
Q Consensus 193 td~~~~~I~~~~~~g~~~~~~~~~----~--~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~----- 261 (357)
.... +-|.++++........... . -....+++.|+ +|.|++.... +.|.+.+............
T Consensus 326 gt~~-~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~-~g~lWiGt~~---~Gl~~~~~~~~~~~~~~~~~~~~~ 400 (795)
T 4a2l_A 326 GTYF-GGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK-DKNLWIGTND---GGLNLYNPITQRFTSYTLQEDESA 400 (795)
T ss_dssp EESS-SCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT-TSCEEEEESS---SCEEEECTTTCCEEEECCC-----
T ss_pred EECC-CCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC-CCCEEEEECC---CCeEEEcCCCCcEEEEecCCCCcc
Confidence 6653 4577777665433333221 1 23467888886 5889888765 4788888775544443211
Q ss_pred -C--CCCceEEEEecCCCE-EEEEeCCCCeEEEEeCCCCCeEEEecC----CCCceEEEEEE-CCEEEEEeCCCCeEEEE
Q psy13635 262 -R--LGWPNGITLDVDNEK-LYWCDAKTDKIEMIDFDGNNRRELINE----NLPHVFGISLL-GDYVYWTDWQRRSIDRV 332 (357)
Q Consensus 262 -~--l~~P~giaid~~~~~-lY~~d~~~~~I~~~~~dG~~~~~i~~~----~~~~p~gia~~-~~~ly~td~~~~~I~~~ 332 (357)
. .....+++.| .+++ ||+.-. .+.+.+++.++...+.+... .......|..+ +|.||+... +.|+++
T Consensus 401 ~~l~~~~v~~i~~d-~~g~~lWigt~-~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~ 476 (795)
T 4a2l_A 401 RGIGSNNIKAVYVD-EKKSLVYIGTH-AGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL--SALVRF 476 (795)
T ss_dssp -CCSCSCEEEEEEE-TTTTEEEEEET-TTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES--SCEEEE
T ss_pred cCCCCccEEEEEEc-CCCCEEEEEeC-cCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec--CceeEE
Confidence 1 1345688888 5677 776653 45689998876555444321 12345677777 578888765 468888
Q ss_pred eCccCce
Q psy13635 333 NKITGND 339 (357)
Q Consensus 333 ~~~~g~~ 339 (357)
++.+++.
T Consensus 477 ~~~~~~~ 483 (795)
T 4a2l_A 477 NPEQRSF 483 (795)
T ss_dssp ETTTTEE
T ss_pred eCCCCeE
Confidence 8755543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0051 Score=61.74 Aligned_cols=243 Identities=14% Similarity=0.145 Sum_probs=141.2
Q ss_pred eecCCCCeEEEEEeC------CcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCC------------CCeEE
Q psy13635 35 LSHHVAAQMLLFATS------KDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG------------TEMIS 96 (357)
Q Consensus 35 ~~~~~~~~~l~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~------------~~~I~ 96 (357)
...++....|.|+.+ ..|+..|+.++.......... +..++++. ++..||++... ...|+
T Consensus 134 ~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~-k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~ 211 (693)
T 3iuj_A 134 LSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV-KFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVY 211 (693)
T ss_dssp EEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE-ESCCCEEE-TTTEEEEEESSCCC-------CCCCEEE
T ss_pred EEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc-eeccEEEe-CCCEEEEEEecCcccccccccCCCcEEE
Confidence 345556666776552 358899998754333322211 11356777 78888887543 24688
Q ss_pred EEEcCCCCcceeEEEEeCCcC----CceeEEEEcCCCeEEEEeC---CCCEEEEEEcCCC--ceEEEEecCCCCcceeee
Q psy13635 97 CCTFDGNNVGSKHNVITNGLI----TPDGLAIDWLTEKLYWTDS---ETNKLEVSSLDGK--KRKVLYWEDIDQPRAIAS 167 (357)
Q Consensus 97 ~~~~~g~~~~~~~~~~~~~~~----~p~glavd~~~~~ly~td~---~~~~I~~~~~~g~--~~~~~~~~~~~~p~~i~~ 167 (357)
+..+.... .....+...-. .-.++++.+.++.|+++.. ..+.|+..++++. ..+.+....
T Consensus 212 ~~~lgt~~--~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~--------- 280 (693)
T 3iuj_A 212 FHRLGTAQ--EDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDL--------- 280 (693)
T ss_dssp EEETTSCG--GGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSS---------
T ss_pred EEECCCCc--ccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCC---------
Confidence 88876543 11233332222 2346788888888877653 2358888888654 233332111
Q ss_pred eccCcccccCCceEEEeCCCCeEEEEeCC---CCeEEEEEcCCCce---EEEecCCCCCceEEEEeCCCCEEEEEeCCCC
Q psy13635 168 YKLPTIEVEHPDGVAVDWVARNLYWTDTG---TDRIEVCRLEGTHR---KVLVNTDLVEPRAITLSPAHGYLFWSDWNEK 241 (357)
Q Consensus 168 ~~~~~~~~~~p~glavD~~~~~lY~td~~---~~~I~~~~~~g~~~---~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~ 241 (357)
..-.. .+++.++.||+.... ..+|.++++++... +.++...-... .+++.++.|+++.....
T Consensus 281 --------~~~~~-~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~---~~s~~g~~lv~~~~~~g 348 (693)
T 3iuj_A 281 --------DADVS-LVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL---TVHSGSGYLFAEYMVDA 348 (693)
T ss_dssp --------SSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE---EEEEETTEEEEEEEETT
T ss_pred --------CceEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE---EEEEECCEEEEEEEECC
Confidence 01111 145567888876543 35899999987543 55555432232 55555678887765432
Q ss_pred CCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeC---CCCeEEEEeCCCCCeEEEe
Q psy13635 242 RPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDA---KTDKIEMIDFDGNNRRELI 302 (357)
Q Consensus 242 ~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~---~~~~I~~~~~dG~~~~~i~ 302 (357)
..+|...+++|.....+.........++..++.++.|+++-. ....++.+++++...+.+.
T Consensus 349 ~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~ 412 (693)
T 3iuj_A 349 TARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYR 412 (693)
T ss_dssp EEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEE
T ss_pred eeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEE
Confidence 348999999987666553222223345555556677776543 2368999998766555443
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=97.92 E-value=0.015 Score=54.49 Aligned_cols=264 Identities=8% Similarity=0.031 Sum_probs=155.0
Q ss_pred EEEEEe-CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCcee
Q psy13635 43 MLLFAT-SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDG 121 (357)
Q Consensus 43 ~l~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~g 121 (357)
+++.+. ...|+..|+.................+++++ ++ +.++...++.|...++.... ....+...-.....
T Consensus 131 ~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~-~l~s~~~dg~i~vwd~~~~~---~~~~~~~h~~~v~~ 204 (445)
T 2ovr_B 131 RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DN-IIISGSTDRTLKVWNAETGE---CIHTLYGHTSTVRC 204 (445)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTTE---EEEEECCCSSCEEE
T ss_pred EEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CC-EEEEEeCCCeEEEEECCcCc---EEEEECCCCCcEEE
Confidence 344443 5679999987644444444455667888887 34 55555667788888887653 23333333345666
Q ss_pred EEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEE
Q psy13635 122 LAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIE 201 (357)
Q Consensus 122 lavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~ 201 (357)
++++ ++. +++-..++.|...++............ ......+++| + ..+++....+.|.
T Consensus 205 ~~~~--~~~-l~s~s~dg~i~~wd~~~~~~~~~~~~~----------------~~~v~~~~~~--~-~~l~~~~~dg~i~ 262 (445)
T 2ovr_B 205 MHLH--EKR-VVSGSRDATLRVWDIETGQCLHVLMGH----------------VAAVRCVQYD--G-RRVVSGAYDFMVK 262 (445)
T ss_dssp EEEE--TTE-EEEEETTSEEEEEESSSCCEEEEEECC----------------SSCEEEEEEC--S-SCEEEEETTSCEE
T ss_pred EEec--CCE-EEEEeCCCEEEEEECCCCcEEEEEcCC----------------cccEEEEEEC--C-CEEEEEcCCCEEE
Confidence 7776 444 455556789999998754433222211 1134455553 3 4444555567888
Q ss_pred EEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEE
Q psy13635 202 VCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWC 281 (357)
Q Consensus 202 ~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~ 281 (357)
..++..................++++ ...++.+... +.|...++........+........+++.+ ++.| ++
T Consensus 263 iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l-~~ 334 (445)
T 2ovr_B 263 VWDPETETCLHTLQGHTNRVYSLQFD--GIHVVSGSLD---TSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNIL-VS 334 (445)
T ss_dssp EEEGGGTEEEEEECCCSSCEEEEEEC--SSEEEEEETT---SCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEE-EE
T ss_pred EEECCCCcEeEEecCCCCceEEEEEC--CCEEEEEeCC---CeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEE-EE
Confidence 88877544433333333456677774 4566666554 578888876555444443333445666664 4444 44
Q ss_pred eCCCCeEEEEeCCCCCeEEEecC---CCCceEEEEEECCEEEEEeCCCCeEEEEeCccCceeEEE
Q psy13635 282 DAKTDKIEMIDFDGNNRRELINE---NLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVI 343 (357)
Q Consensus 282 d~~~~~I~~~~~dG~~~~~i~~~---~~~~p~gia~~~~~ly~td~~~~~I~~~~~~~g~~~~~i 343 (357)
-...+.|...+.........+.. .......++++++.++.+ ...+.|...+..+|+....+
T Consensus 335 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 335 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITS-SDDGTVKLWDLKTGEFIRNL 398 (445)
T ss_dssp EETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEE-ETTSEEEEEETTTCCEEEEE
T ss_pred EeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEE-eCCCeEEEEECCCCceeeee
Confidence 44567899999854433333322 223456677765555544 45688888888788877666
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=97.92 E-value=0.012 Score=55.08 Aligned_cols=196 Identities=14% Similarity=0.106 Sum_probs=118.5
Q ss_pred EeecCCCCe-EEEEEe-CCcEEEEEcCCCCcceEec--cCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeE
Q psy13635 34 ALSHHVAAQ-MLLFAT-SKDIRIANLSRPLKPVTII--KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKH 109 (357)
Q Consensus 34 ~~~~~~~~~-~l~~~~-~~~i~~~~~~~~~~~~~~~--~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~ 109 (357)
|++-++..+ .|.... ...|+..|+.......... ..-....+|+|+|.++.++.+-..++.|...++.+.. ..
T Consensus 124 ~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~---~~ 200 (435)
T 4e54_B 124 SLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI---LR 200 (435)
T ss_dssp EEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCE---EE
T ss_pred EEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCc---ee
Confidence 333344334 333333 5578889987643333322 2445678999998777677777778889988988763 12
Q ss_pred EEEeCC--cCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCC
Q psy13635 110 NVITNG--LITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVA 187 (357)
Q Consensus 110 ~~~~~~--~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~ 187 (357)
.+.... ......+++++ ++.++++-...+.|...++++.....+. .--....++++.+.+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~~~~~~~~-----------------~h~~~v~~v~~~p~~ 262 (435)
T 4e54_B 201 VFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDGKELWNLR-----------------MHKKKVTHVALNPCC 262 (435)
T ss_dssp EEECCSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSSCBCCCSB-----------------CCSSCEEEEEECTTC
T ss_pred EEeccCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCcceeEEEe-----------------cccceEEeeeecCCC
Confidence 222221 12346788987 4556666667889999998876432221 011245678888888
Q ss_pred CeEEEEeCCCCeEEEEEcCCCc-eEEEec--CCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCC
Q psy13635 188 RNLYWTDTGTDRIEVCRLEGTH-RKVLVN--TDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGG 253 (357)
Q Consensus 188 ~~lY~td~~~~~I~~~~~~g~~-~~~~~~--~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~ 253 (357)
+.++++....+.|...++.... ...+.. ........++++|.+..|..+... +.|...+....
T Consensus 263 ~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D---~~i~iwd~~~~ 328 (435)
T 4e54_B 263 DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQK---SEIRVYSASQW 328 (435)
T ss_dssp SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESS---SCEEEEESSSS
T ss_pred ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCC---CEEEEEECCCC
Confidence 7788777767778777765322 111111 122345788899876666655544 46776666543
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.025 Score=56.46 Aligned_cols=252 Identities=10% Similarity=0.046 Sum_probs=147.7
Q ss_pred CCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCc--ceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEc
Q psy13635 69 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNV--GSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSL 146 (357)
Q Consensus 69 ~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~--~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~ 146 (357)
......++++.+.++.++.+-..++.|+..++..... ......+.........+++.+. +++..+-+..+.|...++
T Consensus 381 H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~-g~~l~sgs~Dg~v~vwd~ 459 (694)
T 3dm0_A 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSD-GQFALSGSWDGELRLWDL 459 (694)
T ss_dssp CSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEET
T ss_pred CCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCC-CCEEEEEeCCCcEEEEEC
Confidence 3446778888877777888888888888887764321 1112334444456788999874 455566667889999998
Q ss_pred CCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecC---CCCCceE
Q psy13635 147 DGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNT---DLVEPRA 223 (357)
Q Consensus 147 ~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~---~~~~P~g 223 (357)
............ -....++++.+.+..|. +....+.|...+..+.....+... .......
T Consensus 460 ~~~~~~~~~~~h----------------~~~v~~~~~s~~~~~l~-s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 522 (694)
T 3dm0_A 460 AAGVSTRRFVGH----------------TKDVLSVAFSLDNRQIV-SASRDRTIKLWNTLGECKYTISEGGEGHRDWVSC 522 (694)
T ss_dssp TTTEEEEEEECC----------------SSCEEEEEECTTSSCEE-EEETTSCEEEECTTSCEEEEECSSTTSCSSCEEE
T ss_pred CCCcceeEEeCC----------------CCCEEEEEEeCCCCEEE-EEeCCCEEEEEECCCCcceeeccCCCCCCCcEEE
Confidence 765433222111 12456788886555554 555567888888776655444332 1234678
Q ss_pred EEEeCCCC-EEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEe
Q psy13635 224 ITLSPAHG-YLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELI 302 (357)
Q Consensus 224 iavd~~~g-~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~ 302 (357)
++++|... .+.++-... +.|...++........+.........+++++ ++++.++-...+.|...+.........+
T Consensus 523 ~~~~~~~~~~~l~s~s~d--~~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~~~~~~~~ 599 (694)
T 3dm0_A 523 VRFSPNTLQPTIVSASWD--KTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYSL 599 (694)
T ss_dssp EEECSCSSSCEEEEEETT--SCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTTTEEEECC
T ss_pred EEEeCCCCcceEEEEeCC--CeEEEEECCCCcEEEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCceEEEe
Confidence 88987642 233333332 5788888876655555544455678999985 4555555556778888887544322111
Q ss_pred cCCCCceEEEEEEC-CEEEEEeCCCCeEEEEeCccCceeEEE
Q psy13635 303 NENLPHVFGISLLG-DYVYWTDWQRRSIDRVNKITGNDREVI 343 (357)
Q Consensus 303 ~~~~~~p~gia~~~-~~ly~td~~~~~I~~~~~~~g~~~~~i 343 (357)
..-.....+++.. +.+..+. ..+.|...+..+++....+
T Consensus 600 -~~~~~v~~~~~sp~~~~l~~~-~~~~i~iwd~~~~~~~~~~ 639 (694)
T 3dm0_A 600 -EANSVIHALCFSPNRYWLCAA-TEHGIKIWDLESKSIVEDL 639 (694)
T ss_dssp -BCSSCEEEEEECSSSSEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred -cCCCcEEEEEEcCCCcEEEEE-cCCCEEEEECCCCCChhhh
Confidence 1222345566653 3322222 2345666666555544433
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00016 Score=69.91 Aligned_cols=122 Identities=16% Similarity=0.167 Sum_probs=82.5
Q ss_pred CCcCCceeEEEEcCCCeEEEEeCC---------------------CCEEEEEEcCCCc-------eEEEEecCCC-Cc--
Q psy13635 114 NGLITPDGLAIDWLTEKLYWTDSE---------------------TNKLEVSSLDGKK-------RKVLYWEDID-QP-- 162 (357)
Q Consensus 114 ~~~~~p~glavd~~~~~ly~td~~---------------------~~~I~~~~~~g~~-------~~~~~~~~~~-~p-- 162 (357)
..+..|+++++++.++.||++-.+ .++|+++..++.. -+.++..+-. ..
T Consensus 381 T~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~ 460 (592)
T 4a9v_A 381 TRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAG 460 (592)
T ss_dssp CCEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTT
T ss_pred ccccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccc
Confidence 345689999999999999998543 2789998875532 1222221100 00
Q ss_pred ------ceeeeeccCcccccCCceEEEeCCCCeEEE-EeCC-----------CCeEEEEEcCCCceEEEecC-CCCCceE
Q psy13635 163 ------RAIASYKLPTIEVEHPDGVAVDWVARNLYW-TDTG-----------TDRIEVCRLEGTHRKVLVNT-DLVEPRA 223 (357)
Q Consensus 163 ------~~i~~~~~~~~~~~~p~glavD~~~~~lY~-td~~-----------~~~I~~~~~~g~~~~~~~~~-~~~~P~g 223 (357)
..+. ....|+.|++|++|+ .|.||+ +|.. .+.+++++++....+.++.. ....|+|
T Consensus 461 ~~~~g~~~~~----~~~~fnsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnG 535 (592)
T 4a9v_A 461 TPKGGSSNIT----PQNMFNSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTG 535 (592)
T ss_dssp SGGGCCTTCC----TTTCCCCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEE
T ss_pred ccccCccCcc----ccCccCCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccC
Confidence 0000 124688999999995 689999 8864 33799999864444444432 3568999
Q ss_pred EEEeCCCCEEEEEeCCC
Q psy13635 224 ITLSPAHGYLFWSDWNE 240 (357)
Q Consensus 224 iavd~~~g~Ly~~d~~~ 240 (357)
++++|+...||++-...
T Consensus 536 iafSPD~ktLfV~vQHP 552 (592)
T 4a9v_A 536 ISFSPDQKTLFVGIQHP 552 (592)
T ss_dssp EEECTTSSEEEEEEEST
T ss_pred CEECCCCCEEEEEEeCC
Confidence 99999999999998764
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=97.89 E-value=0.012 Score=52.18 Aligned_cols=209 Identities=9% Similarity=-0.026 Sum_probs=113.8
Q ss_pred CCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcc-eeEEEEeCCcCCceeEEEEcC-CCeEEEEeCCCCEEEEEEc
Q psy13635 69 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVG-SKHNVITNGLITPDGLAIDWL-TEKLYWTDSETNKLEVSSL 146 (357)
Q Consensus 69 ~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-~~~~~~~~~~~~p~glavd~~-~~~ly~td~~~~~I~~~~~ 146 (357)
.......+++++.+..|. +-..++.|...+++..... .....+...-.....+++.+. .+.++++-..++.|...++
T Consensus 10 H~~~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~ 88 (351)
T 3f3f_A 10 HDDLVHDVVYDFYGRHVA-TCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEE 88 (351)
T ss_dssp CSSCEEEEEECSSSSEEE-EEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred cccceeEEEEcCCCCEEE-EeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEec
Confidence 345678889988655554 4445677888887754311 112233344456788888864 3556666666788988888
Q ss_pred CCCce-------EEEEecCCCCcceeeeeccCcccccCCceEEEeCCC-CeEEEEeCCCCeEEEEEcCCCce-EEE----
Q psy13635 147 DGKKR-------KVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVA-RNLYWTDTGTDRIEVCRLEGTHR-KVL---- 213 (357)
Q Consensus 147 ~g~~~-------~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~-~~lY~td~~~~~I~~~~~~g~~~-~~~---- 213 (357)
+.... +.+..- ...-....++++.+.. +.++++-...+.|...++..... ..+
T Consensus 89 ~~~~~~~~~~~~~~~~~~--------------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 154 (351)
T 3f3f_A 89 DPDQEECSGRRWNKLCTL--------------NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTS 154 (351)
T ss_dssp CTTSCTTSSCSEEEEEEE--------------CCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEE
T ss_pred CCCcccccccCcceeeee--------------cccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccc
Confidence 65421 111100 1111245678887662 34444545567888888654321 110
Q ss_pred --e------cCCCCCceEEEEeCC---CCEEEEEeCCCCCCeEEEEecCCCceEEE--eeCCCCCceEEEEecCCC---E
Q psy13635 214 --V------NTDLVEPRAITLSPA---HGYLFWSDWNEKRPKIERSLLNGGERVLL--VKDRLGWPNGITLDVDNE---K 277 (357)
Q Consensus 214 --~------~~~~~~P~giavd~~---~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~--~~~~l~~P~giaid~~~~---~ 277 (357)
. .........++++|. ...+..+... +.+............+ +...-....++++.+.++ .
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~ 231 (351)
T 3f3f_A 155 EMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALE---QAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQ 231 (351)
T ss_dssp EEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETT---EEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSE
T ss_pred cccccccccCCcccceeEEEeccCCCCCcEEEEecCC---CcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcce
Confidence 0 012345678888875 4555555544 2443333333322222 222234567899986542 5
Q ss_pred EEEEeCCCCeEEEEeCCC
Q psy13635 278 LYWCDAKTDKIEMIDFDG 295 (357)
Q Consensus 278 lY~~d~~~~~I~~~~~dG 295 (357)
++++-...+.|...+...
T Consensus 232 ~l~s~~~dg~i~iwd~~~ 249 (351)
T 3f3f_A 232 LIATGCKDGRIRIFKITE 249 (351)
T ss_dssp EEEEEETTSCEEEEEEEE
T ss_pred EEEEEcCCCeEEEEeCCC
Confidence 666665667777777643
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.018 Score=57.65 Aligned_cols=239 Identities=13% Similarity=0.127 Sum_probs=140.5
Q ss_pred ccCCEEEEEeCCC----CeEEEEEcCCCCcceeEEEEeCC--c-----CCceeEEEEcCCCeEEEEeCC----CCEEEEE
Q psy13635 80 YKKSMVCWTDHGT----EMISCCTFDGNNVGSKHNVITNG--L-----ITPDGLAIDWLTEKLYWTDSE----TNKLEVS 144 (357)
Q Consensus 80 ~~~~~ly~~d~~~----~~I~~~~~~g~~~~~~~~~~~~~--~-----~~p~glavd~~~~~ly~td~~----~~~I~~~ 144 (357)
+.++++|++.... ..|++.+.++.. ..++... + ....++++.|.++.|.++... ...|++.
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~ 152 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQ----EKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVI 152 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSC----CEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCC----cEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEE
Confidence 4578888775433 468998887664 3333321 1 135678899888887665432 2589999
Q ss_pred EcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCC------------CeEEEEEcCCCce--
Q psy13635 145 SLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGT------------DRIEVCRLEGTHR-- 210 (357)
Q Consensus 145 ~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~------------~~I~~~~~~g~~~-- 210 (357)
++++..... ...+ ... ...+++..+.+..||++.... ..|++.++.+...
T Consensus 153 dl~tg~~~~--~~~~-------------~~~-~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~ 216 (695)
T 2bkl_A 153 DVDSGEWSK--VDVI-------------EGG-KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKD 216 (695)
T ss_dssp ETTTCCBCS--SCCB-------------SCC-TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGC
T ss_pred ECCCCCCcC--Cccc-------------Ccc-cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhc
Confidence 988764320 0000 000 115677777777888776532 3599998876542
Q ss_pred EEEecCC--CCCceEEEEeCCCCEEEEEeCCC-CCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeC---C
Q psy13635 211 KVLVNTD--LVEPRAITLSPAHGYLFWSDWNE-KRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDA---K 284 (357)
Q Consensus 211 ~~~~~~~--~~~P~giavd~~~g~Ly~~d~~~-~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~---~ 284 (357)
..+.... ...-.+++++|.+.+|+++.... ....|+..+..+...+.+.... ........ +.++ +|+... .
T Consensus 217 ~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~-~~~~~~~~-~~g~-l~~~s~~~~~ 293 (695)
T 2bkl_A 217 TVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGV-GAKYEVHA-WKDR-FYVLTDEGAP 293 (695)
T ss_dssp EEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECS-SCCEEEEE-ETTE-EEEEECTTCT
T ss_pred eEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCC-CceEEEEe-cCCc-EEEEECCCCC
Confidence 2333221 12345889999877787765442 1247888876555555554332 22222222 3555 777654 4
Q ss_pred CCeEEEEeCCCCCe---EEEecCC-CCceEEEEEECCEEEEEeCCCC--eEEEEeCccCceeEE
Q psy13635 285 TDKIEMIDFDGNNR---RELINEN-LPHVFGISLLGDYVYWTDWQRR--SIDRVNKITGNDREV 342 (357)
Q Consensus 285 ~~~I~~~~~dG~~~---~~i~~~~-~~~p~gia~~~~~ly~td~~~~--~I~~~~~~~g~~~~~ 342 (357)
..+|+.+++++... +.++... -....++++.++.++++....+ +|+.++. +|+....
T Consensus 294 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~-~g~~~~~ 356 (695)
T 2bkl_A 294 RQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATL-KGKPVRT 356 (695)
T ss_dssp TCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEET-TCCEEEE
T ss_pred CCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeC-CCCeeEE
Confidence 57999999976542 5555433 2345678888888888765443 4667776 4554433
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.018 Score=53.58 Aligned_cols=264 Identities=13% Similarity=0.035 Sum_probs=148.8
Q ss_pred CCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCC---CCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEc
Q psy13635 70 LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDG---NNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSL 146 (357)
Q Consensus 70 ~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g---~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~ 146 (357)
.....++++.+.++.++.+-..++.|...++.. .......... ..-..+..+++.+ .+.++++-...+.|...++
T Consensus 63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~-~~~~l~s~s~dg~i~vwd~ 140 (437)
T 3gre_A 63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIP-NFDAFAVSSKDGQIIVLKV 140 (437)
T ss_dssp TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECT-TSSEEEEEETTSEEEEEEE
T ss_pred CCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEEe
Confidence 467899999984455556666778888888765 2100001111 2335678899997 4455555556788888877
Q ss_pred ----CCCceEEEEecCCCCcceeeeeccCcc-cccCCceEE--EeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecC--C
Q psy13635 147 ----DGKKRKVLYWEDIDQPRAIASYKLPTI-EVEHPDGVA--VDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNT--D 217 (357)
Q Consensus 147 ----~g~~~~~~~~~~~~~p~~i~~~~~~~~-~~~~p~gla--vD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~--~ 217 (357)
.|.......... -+.+.+ .+. .-.....++ .. ..+.++++....+.|...++........... .
T Consensus 141 ~~~~~~~~~~~~~~~~---i~~~~~---~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h 213 (437)
T 3gre_A 141 NHYQQESEVKFLNCEC---IRKINL---KNFGKNEYAVRMRAFVN-EEKSLLVALTNLSRVIIFDIRTLERLQIIENSPR 213 (437)
T ss_dssp EEEEETTEEEEEEEEE---EEEEEG---GGGSSCCCEEEEEEEEC-SSCEEEEEEETTSEEEEEETTTCCEEEEEECCGG
T ss_pred ccccCCceeeccccce---eEEEEc---cCcccccCceEEEEEEc-CCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCC
Confidence 343332221110 001100 000 001122222 22 2345566666677899998875444333332 2
Q ss_pred CCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEee-CCCCCceEEEEec---CCCEEEEEeCCCCeEEEEeC
Q psy13635 218 LVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVK-DRLGWPNGITLDV---DNEKLYWCDAKTDKIEMIDF 293 (357)
Q Consensus 218 ~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~-~~l~~P~giaid~---~~~~lY~~d~~~~~I~~~~~ 293 (357)
......++++|....|+.+... +.|...++........+. ..-.....+++.+ .++.+.++-...+.|...+.
T Consensus 214 ~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~ 290 (437)
T 3gre_A 214 HGAVSSICIDEECCVLILGTTR---GIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNF 290 (437)
T ss_dssp GCCEEEEEECTTSCEEEEEETT---SCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEET
T ss_pred CCceEEEEECCCCCEEEEEcCC---CeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEc
Confidence 3578899999875556655554 578777776544333322 2222345665543 24556666666778888888
Q ss_pred CCCC-eEEEecC-------------------------CCCceEEEEEECCEEEEEeCCCCeEEEEeCccCceeEEEec
Q psy13635 294 DGNN-RRELINE-------------------------NLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVIIE 345 (357)
Q Consensus 294 dG~~-~~~i~~~-------------------------~~~~p~gia~~~~~ly~td~~~~~I~~~~~~~g~~~~~i~~ 345 (357)
.... ...+... .......+++.++.++++-...+.|...+..+++....+..
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 368 (437)
T 3gre_A 291 VKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVIS 368 (437)
T ss_dssp TTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEEC
T ss_pred CCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEec
Confidence 6433 2222211 01113457777778888887888999999877877766653
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.031 Score=55.70 Aligned_cols=225 Identities=8% Similarity=0.003 Sum_probs=133.9
Q ss_pred CCcEEEEEcCCCCc-----ceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEE
Q psy13635 49 SKDIRIANLSRPLK-----PVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLA 123 (357)
Q Consensus 49 ~~~i~~~~~~~~~~-----~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~gla 123 (357)
+..|+..++..... ...+.........+++++.+..| .+-..++.|+..++.... ....+........+++
T Consensus 404 D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l-~sgs~Dg~v~vwd~~~~~---~~~~~~~h~~~v~~~~ 479 (694)
T 3dm0_A 404 DKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFA-LSGSWDGELRLWDLAAGV---STRRFVGHTKDVLSVA 479 (694)
T ss_dssp TSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEE-EEEETTSEEEEEETTTTE---EEEEEECCSSCEEEEE
T ss_pred CCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEE-EEEeCCCcEEEEECCCCc---ceeEEeCCCCCEEEEE
Confidence 45688888865321 12233455567889999865544 455567889988887653 2333444445678899
Q ss_pred EEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCC-CeEEEEeCCCCeEEE
Q psy13635 124 IDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVA-RNLYWTDTGTDRIEV 202 (357)
Q Consensus 124 vd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~-~~lY~td~~~~~I~~ 202 (357)
+.+.++.| ++-+..+.|...+..+.....+...... .-....++++.+.. +.++++....+.|..
T Consensus 480 ~s~~~~~l-~s~s~D~~i~iwd~~~~~~~~~~~~~~~-------------h~~~v~~~~~~~~~~~~~l~s~s~d~~v~v 545 (694)
T 3dm0_A 480 FSLDNRQI-VSASRDRTIKLWNTLGECKYTISEGGEG-------------HRDWVSCVRFSPNTLQPTIVSASWDKTVKV 545 (694)
T ss_dssp ECTTSSCE-EEEETTSCEEEECTTSCEEEEECSSTTS-------------CSSCEEEEEECSCSSSCEEEEEETTSCEEE
T ss_pred EeCCCCEE-EEEeCCCEEEEEECCCCcceeeccCCCC-------------CCCcEEEEEEeCCCCcceEEEEeCCCeEEE
Confidence 99755554 5555678888888766544333211110 11234567776554 245566666778988
Q ss_pred EEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEe
Q psy13635 203 CRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCD 282 (357)
Q Consensus 203 ~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d 282 (357)
.++..................++++|....|..+... +.|...++........+ ..-.....+++.+.+..|..+.
T Consensus 546 wd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~D---g~i~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~ 621 (694)
T 3dm0_A 546 WNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKD---GVVLLWDLAEGKKLYSL-EANSVIHALCFSPNRYWLCAAT 621 (694)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT---SBCEEEETTTTEEEECC-BCSSCEEEEEECSSSSEEEEEE
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCceEEEe-cCCCcEEEEEEcCCCcEEEEEc
Confidence 8887655544444444567899999875555444433 47777777654332222 1223457888875444343333
Q ss_pred CCCCeEEEEeCCCCC
Q psy13635 283 AKTDKIEMIDFDGNN 297 (357)
Q Consensus 283 ~~~~~I~~~~~dG~~ 297 (357)
.+.|...++....
T Consensus 622 --~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 622 --EHGIKIWDLESKS 634 (694)
T ss_dssp --TTEEEEEETTTTE
T ss_pred --CCCEEEEECCCCC
Confidence 4557777776543
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=97.83 E-value=0.015 Score=51.72 Aligned_cols=209 Identities=11% Similarity=0.022 Sum_probs=121.0
Q ss_pred CCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcc--eeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEc
Q psy13635 69 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVG--SKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSL 146 (357)
Q Consensus 69 ~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~--~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~ 146 (357)
.-....+|+++|.++.+..+-..++.|...++...... .....+...-..+..+++.+.+..| .+-...+.|...+.
T Consensus 37 H~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l-~s~~~d~~i~~~~~ 115 (340)
T 4aow_A 37 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFA-LSGSWDGTLRLWDL 115 (340)
T ss_dssp CSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEE-EEEETTSEEEEEET
T ss_pred ccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEE-EEEcccccceEEee
Confidence 34568899999887777777777787877777654311 1122333334567889999755444 45555778888887
Q ss_pred CCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecC-CCCCceEEE
Q psy13635 147 DGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNT-DLVEPRAIT 225 (357)
Q Consensus 147 ~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~-~~~~P~gia 225 (357)
............. .........+.+..|+ +....+.+...+..+......... .......++
T Consensus 116 ~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~l~-s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~ 178 (340)
T 4aow_A 116 TTGTTTRRFVGHT----------------KDVLSVAFSSDNRQIV-SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR 178 (340)
T ss_dssp TTTEEEEEEECCS----------------SCEEEEEECTTSSCEE-EEETTSCEEEECTTSCEEEEECSSSCSSCEEEEE
T ss_pred cccceeeeecCCC----------------CceeEEEEeecCccce-eecCCCeEEEEEeCCCceEEEEeccccCcccceE
Confidence 7665444332211 1233344444444444 444456677777666554443322 234456677
Q ss_pred EeCCCCE-EEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCe
Q psy13635 226 LSPAHGY-LFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNR 298 (357)
Q Consensus 226 vd~~~g~-Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~ 298 (357)
+.+.... ++.+-... +.|...++............-....++++++.+. ++++-...+.|...+......
T Consensus 179 ~~~~~~~~~~~s~~~d--~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~Dg~i~iwd~~~~~~ 249 (340)
T 4aow_A 179 FSPNSSNPIIVSCGWD--KLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLWDLNEGKH 249 (340)
T ss_dssp ECSCSSSCEEEEEETT--SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTCEEEEEETTTTEE
T ss_pred EccCCCCcEEEEEcCC--CEEEEEECCCCceeeEecCCCCcEEEEEECCCCC-EEEEEeCCCeEEEEEeccCce
Confidence 7655433 33443332 5777777776655444434444568899986544 444545567888888765443
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0054 Score=61.47 Aligned_cols=245 Identities=13% Similarity=0.070 Sum_probs=138.8
Q ss_pred EEeecCCCCeEEEEEeC------CcEEEEEcCCCCcc-eEeccCCCcEEEEEEEccCCEEEEEeCCC------------C
Q psy13635 33 YALSHHVAAQMLLFATS------KDIRIANLSRPLKP-VTIIKDLEEGAAIDYYYKKSMVCWTDHGT------------E 93 (357)
Q Consensus 33 ~~~~~~~~~~~l~~~~~------~~i~~~~~~~~~~~-~~~~~~~~~~~~i~~d~~~~~ly~~d~~~------------~ 93 (357)
.+.+-++....|.|+.. ..|+.+|+.++... ........ ..++++.+++..|+++.... .
T Consensus 124 ~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~-~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~ 202 (695)
T 2bkl_A 124 GTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGK-YATPKWTPDSKGFYYEWLPTDPSIKVDERPGYT 202 (695)
T ss_dssp EEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCT-TCCCEECTTSSEEEEEECCCCTTSCGGGGGGGC
T ss_pred EEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCccc-ccceEEecCCCEEEEEEecCCCCCccccCCCCC
Confidence 34455566666776652 46999999875432 11122221 15788999888898886532 3
Q ss_pred eEEEEEcCCCCcceeEEEEeCCc---CCceeEEEEcCCCeEEEEeCC---CCEEEEEEcCCCceEEEEecCCCCcceeee
Q psy13635 94 MISCCTFDGNNVGSKHNVITNGL---ITPDGLAIDWLTEKLYWTDSE---TNKLEVSSLDGKKRKVLYWEDIDQPRAIAS 167 (357)
Q Consensus 94 ~I~~~~~~g~~~~~~~~~~~~~~---~~p~glavd~~~~~ly~td~~---~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~ 167 (357)
.|++.++.+.. ....++...- ....++++++.++.|+++... ...|+..+..+...+.+....
T Consensus 203 ~v~~~~l~t~~--~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~--------- 271 (695)
T 2bkl_A 203 TIRYHTLGTEP--SKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGV--------- 271 (695)
T ss_dssp EEEEEETTSCG--GGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECS---------
T ss_pred EEEEEECCCCc--hhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCC---------
Confidence 49999987663 1122332221 234578899888888776533 346777766444444443211
Q ss_pred eccCcccccCCceEEEeCCCCeEEEEeC---CCCeEEEEEcCCCce---EEEecCC-CCCceEEEEeCCCCEEEEEeCCC
Q psy13635 168 YKLPTIEVEHPDGVAVDWVARNLYWTDT---GTDRIEVCRLEGTHR---KVLVNTD-LVEPRAITLSPAHGYLFWSDWNE 240 (357)
Q Consensus 168 ~~~~~~~~~~p~glavD~~~~~lY~td~---~~~~I~~~~~~g~~~---~~~~~~~-~~~P~giavd~~~g~Ly~~d~~~ 240 (357)
......+ .+.++ +|+... ...+|.++++++... +.++... -....+++++ ++.|+++....
T Consensus 272 --------~~~~~~~-~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~d 339 (695)
T 2bkl_A 272 --------GAKYEVH-AWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV--GGHLSLEYLKD 339 (695)
T ss_dssp --------SCCEEEE-EETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE--TTEEEEEEEET
T ss_pred --------CceEEEE-ecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE--CCEEEEEEEEC
Confidence 0111222 23455 776543 246899999875442 4555432 2335677777 57787776543
Q ss_pred CCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeC---CCCeEEEEeCCCCCeEEE
Q psy13635 241 KRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDA---KTDKIEMIDFDGNNRREL 301 (357)
Q Consensus 241 ~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~---~~~~I~~~~~dG~~~~~i 301 (357)
...+|+..+++|.....+.........+++.++.+..++++-. ..+.|+..++++...+.+
T Consensus 340 g~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l 403 (695)
T 2bkl_A 340 ATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELW 403 (695)
T ss_dssp TEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred CEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 2358888888876544432111222344555555566665432 235788888876555444
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=97.82 E-value=0.02 Score=52.88 Aligned_cols=241 Identities=8% Similarity=0.019 Sum_probs=135.6
Q ss_pred EeecCCCCeEEEEEe-CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEE
Q psy13635 34 ALSHHVAAQMLLFAT-SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI 112 (357)
Q Consensus 34 ~~~~~~~~~~l~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~ 112 (357)
++.-++...+|+.+. ...|+..|+.................++++.+.+..|+ +-..++.|+..++.... ....
T Consensus 128 ~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~-s~s~d~~v~iwd~~~~~----~~~~ 202 (393)
T 1erj_A 128 SVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV-SGSGDRTVRIWDLRTGQ----CSLT 202 (393)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE-EEETTSEEEEEETTTTE----EEEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEE-EecCCCcEEEEECCCCe----eEEE
Confidence 444455555666555 45688899976443344444566788999998766665 55566788888887653 2222
Q ss_pred eCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEE
Q psy13635 113 TNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYW 192 (357)
Q Consensus 113 ~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~ 192 (357)
...-..+..+++.+..+.++.+....+.|...++................ ..--....++++.+.+..| +
T Consensus 203 ~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~---------~~h~~~v~~v~~~~~g~~l-~ 272 (393)
T 1erj_A 203 LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESG---------TGHKDSVYSVVFTRDGQSV-V 272 (393)
T ss_dssp EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC---------------CCCSSCEEEEEECTTSSEE-E
T ss_pred EEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCC---------CCCCCCEEEEEECCCCCEE-E
Confidence 22234567888887667777777778889998876544322211100000 0011245678888655555 4
Q ss_pred EeCCCCeEEEEEcCCCc------------eEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEee
Q psy13635 193 TDTGTDRIEVCRLEGTH------------RKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVK 260 (357)
Q Consensus 193 td~~~~~I~~~~~~g~~------------~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~ 260 (357)
+....+.|...++.... ..............+++++.+..|..+... +.|...+.........+.
T Consensus 273 s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D---~~v~iwd~~~~~~~~~l~ 349 (393)
T 1erj_A 273 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD---RGVLFWDKKSGNPLLMLQ 349 (393)
T ss_dssp EEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT---SEEEEEETTTCCEEEEEE
T ss_pred EEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCC---CeEEEEECCCCeEEEEEC
Confidence 55556777777765321 111111223446778888765555444333 477777776554444443
Q ss_pred CCCCCceEEEEecC-----CCEEEEEeCCCCeEEEEe
Q psy13635 261 DRLGWPNGITLDVD-----NEKLYWCDAKTDKIEMID 292 (357)
Q Consensus 261 ~~l~~P~giaid~~-----~~~lY~~d~~~~~I~~~~ 292 (357)
..-.....+++.+. ++.++++-...+.|..-+
T Consensus 350 ~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 350 GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 386 (393)
T ss_dssp CCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred CCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECc
Confidence 33344566666431 355666655555555544
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.017 Score=51.74 Aligned_cols=230 Identities=11% Similarity=0.025 Sum_probs=127.2
Q ss_pred eEEEEEe-CCcEEEEEcCCCC-cceEeccCCCcEEEEEEEc-----cCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeC
Q psy13635 42 QMLLFAT-SKDIRIANLSRPL-KPVTIIKDLEEGAAIDYYY-----KKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN 114 (357)
Q Consensus 42 ~~l~~~~-~~~i~~~~~~~~~-~~~~~~~~~~~~~~i~~d~-----~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 114 (357)
.+++.+. ...|+..|+.... .............++++.+ .++....+...++.|...++..... ....+..
T Consensus 81 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~--~~~~~~~ 158 (357)
T 3i2n_A 81 RYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD--PVANMEP 158 (357)
T ss_dssp CCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS--CSEEECC
T ss_pred ceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC--cceeccc
Confidence 4455554 5579999998754 3444444556677886542 2344445555667888888876531 1222211
Q ss_pred --C--cCCceeEE----EEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeC-
Q psy13635 115 --G--LITPDGLA----IDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDW- 185 (357)
Q Consensus 115 --~--~~~p~gla----vd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~- 185 (357)
+ ......++ +++ .+.++++....+.|...++............ .....+++++
T Consensus 159 ~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-----------------~~v~~~~~~~~ 220 (357)
T 3i2n_A 159 VQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALRWETNIK-----------------NGVCSLEFDRK 220 (357)
T ss_dssp CTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEEEEEEECS-----------------SCEEEEEESCS
T ss_pred cCCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCceeeecCCC-----------------CceEEEEcCCC
Confidence 1 12345555 344 4555566666789999998776553332111 2467788887
Q ss_pred --CCCeEEEEeCCCCeEEEEEcCCCce-EEE----ecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCce---
Q psy13635 186 --VARNLYWTDTGTDRIEVCRLEGTHR-KVL----VNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGER--- 255 (357)
Q Consensus 186 --~~~~lY~td~~~~~I~~~~~~g~~~-~~~----~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~--- 255 (357)
.++.|+ +....+.|...++..... ..+ ..........++++|.+..++++-... +.|...++.....
T Consensus 221 ~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~ 297 (357)
T 3i2n_A 221 DISMNKLV-ATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGA--GGLHLWKYEYPIQRSK 297 (357)
T ss_dssp SSSCCEEE-EEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETT--SEEEEEEEECCSCC--
T ss_pred CCCCCEEE-EECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCC--CcEEEeecCCCccccc
Confidence 444544 445557788777653221 111 113345678999998644355554442 4666665542211
Q ss_pred ----------------EEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCC
Q psy13635 256 ----------------VLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFD 294 (357)
Q Consensus 256 ----------------~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~d 294 (357)
.......-....++++.+.+..|.++-...+.|...+..
T Consensus 298 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 298 KDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred ccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECC
Confidence 111222334457888876666666555556667666553
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=97.81 E-value=0.017 Score=51.69 Aligned_cols=230 Identities=10% Similarity=0.031 Sum_probs=136.1
Q ss_pred ecCCCCeEEEEEe-CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeC
Q psy13635 36 SHHVAAQMLLFAT-SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN 114 (357)
Q Consensus 36 ~~~~~~~~l~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 114 (357)
.-++...+++-+. +..|+..|+..+..............++++++.+. +..+-..++.|...++.+.. ...+..
T Consensus 72 ~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~~~----~~~~~~ 146 (319)
T 3frx_A 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQC----LATLLG 146 (319)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTSCE----EEEECC
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCe----EEEEec
Confidence 3344555555555 56789999977554444555666788999998554 45565667788888887652 333333
Q ss_pred CcCCceeEEEEcC-----CCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCe
Q psy13635 115 GLITPDGLAIDWL-----TEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARN 189 (357)
Q Consensus 115 ~~~~p~glavd~~-----~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~ 189 (357)
.......+++.+. .+.++++-...+.|...++........... --.....+++.+.+ .
T Consensus 147 h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~----------------h~~~v~~~~~sp~g-~ 209 (319)
T 3frx_A 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG----------------HNSNINTLTASPDG-T 209 (319)
T ss_dssp CSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECC----------------CCSCEEEEEECTTS-S
T ss_pred cCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecC----------------CCCcEEEEEEcCCC-C
Confidence 3344566676543 233566666778888888865543322211 11245678888654 4
Q ss_pred EEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCC-------
Q psy13635 190 LYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDR------- 262 (357)
Q Consensus 190 lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~------- 262 (357)
++++-...+.|..-++.......... .......++++|....|..+... .+...+++.......+...
T Consensus 210 ~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~la~~~~~----~i~v~~~~~~~~~~~~~~~~~~~~~~ 284 (319)
T 3frx_A 210 LIASAGKDGEIMLWNLAAKKAMYTLS-AQDEVFSLAFSPNRYWLAAATAT----GIKVFSLDPQYLVDDLRPEFAGYSKA 284 (319)
T ss_dssp EEEEEETTCEEEEEETTTTEEEEEEE-CCSCEEEEEECSSSSEEEEEETT----EEEEEEETTEEEEEEECCCCTTCCGG
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEcCCCCEEEEEcCC----CcEEEEeCcCeeeeccCccccccccC
Confidence 55565566789998887654433333 23567899999976666555533 5666666544333222221
Q ss_pred -CCCceEEEEecCCCEEEEEeCCCCeEEEEeC
Q psy13635 263 -LGWPNGITLDVDNEKLYWCDAKTDKIEMIDF 293 (357)
Q Consensus 263 -l~~P~giaid~~~~~lY~~d~~~~~I~~~~~ 293 (357)
-.....+++.+++..|+... ..+.|...+.
T Consensus 285 ~~~~v~~~~~spdg~~l~sg~-~Dg~i~vWd~ 315 (319)
T 3frx_A 285 AEPHAVSLAWSADGQTLFAGY-TDNVIRVWQV 315 (319)
T ss_dssp GCCCEEEEEECTTSSEEEEEE-TTSCEEEEEE
T ss_pred cCcceeEEEECCCCCEEEEee-cCceEEEEEE
Confidence 12346788886655555443 4555655543
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.019 Score=51.51 Aligned_cols=259 Identities=11% Similarity=0.013 Sum_probs=136.1
Q ss_pred EeecCCC---CeEEEEEe-CCcEEEEEcCC-CCcc-eEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcce
Q psy13635 34 ALSHHVA---AQMLLFAT-SKDIRIANLSR-PLKP-VTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGS 107 (357)
Q Consensus 34 ~~~~~~~---~~~l~~~~-~~~i~~~~~~~-~~~~-~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~ 107 (357)
|++-++. ..+|+.+. ...|+..|+.. +... ............+++.+.+..|+ +-..++.|...+++...
T Consensus 44 ~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~v~iwd~~~~~--- 119 (368)
T 3mmy_A 44 CLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF-TASCDKTAKMWDLSSNQ--- 119 (368)
T ss_dssp EEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEE-EEETTSEEEEEETTTTE---
T ss_pred EEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEE-EEcCCCcEEEEEcCCCC---
Confidence 3444444 25565555 45688888875 2332 33344566788999998666665 44456789988988764
Q ss_pred eEEEEeCCcCCceeEEE--EcCCCeEEEEeCCCCEEEEEEcCCCce-EEEEecCCCCcceeeeeccCcccccCCceEEEe
Q psy13635 108 KHNVITNGLITPDGLAI--DWLTEKLYWTDSETNKLEVSSLDGKKR-KVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVD 184 (357)
Q Consensus 108 ~~~~~~~~~~~p~glav--d~~~~~ly~td~~~~~I~~~~~~g~~~-~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD 184 (357)
.......-.....+++ ++ .+.++++-..++.|...++..... ..+. . ....++++
T Consensus 120 -~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~-------------------~~~~~~~~ 177 (368)
T 3mmy_A 120 -AIQIAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQ-L-------------------PERCYCAD 177 (368)
T ss_dssp -EEEEEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEEE-C-------------------SSCEEEEE
T ss_pred -ceeeccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEEe-c-------------------CCCceEEE
Confidence 2223333456788888 54 556666666678999998765433 2221 1 11233444
Q ss_pred CCCCeEEEEeCCCCeEEEEEcCCCceEEEecC-C-CCCceEEEEeCCCC---E-EEEEeCCCCCCeEEEEecCCCc---e
Q psy13635 185 WVARNLYWTDTGTDRIEVCRLEGTHRKVLVNT-D-LVEPRAITLSPAHG---Y-LFWSDWNEKRPKIERSLLNGGE---R 255 (357)
Q Consensus 185 ~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~-~-~~~P~giavd~~~g---~-Ly~~d~~~~~~~I~~~~~dg~~---~ 255 (357)
+....++.+.. .+.+...+.+.......... . ......+++.+... . ++.+... +.|...+++... .
T Consensus 178 ~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---g~i~i~~~~~~~~~~~ 253 (368)
T 3mmy_A 178 VIYPMAVVATA-ERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIE---GRVAIHYINPPNPAKD 253 (368)
T ss_dssp EETTEEEEEEG-GGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETT---SEEEEEESSCSCHHHH
T ss_pred ecCCeeEEEeC-CCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCC---CcEEEEecCCCCcccc
Confidence 44445554443 34566666654432221111 1 11122222221111 1 2222222 355555554431 1
Q ss_pred EEEeeCCC------------CCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEEC--CEEEE
Q psy13635 256 VLLVKDRL------------GWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLG--DYVYW 321 (357)
Q Consensus 256 ~~~~~~~l------------~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~~--~~ly~ 321 (357)
...+.... ....++++++.+..|+.+ ...+.|...+.........+.........+++.. ..|..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 332 (368)
T 3mmy_A 254 NFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATV-GSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAY 332 (368)
T ss_dssp SEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEE-ETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEE
T ss_pred ceeeeeeecccccccccccccceEEEEEecCCCEEEEE-ccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEE
Confidence 11111111 146789998755555554 4567899999876544444433344567788763 34444
Q ss_pred Ee
Q psy13635 322 TD 323 (357)
Q Consensus 322 td 323 (357)
+.
T Consensus 333 ~s 334 (368)
T 3mmy_A 333 AS 334 (368)
T ss_dssp EE
T ss_pred Ee
Confidence 43
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.027 Score=51.68 Aligned_cols=258 Identities=9% Similarity=0.027 Sum_probs=146.7
Q ss_pred CCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCC
Q psy13635 69 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG 148 (357)
Q Consensus 69 ~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g 148 (357)
......+++|.+.+.. ..+-..++.|...+..... ....+.........+++++. ++...+-...+.|...++..
T Consensus 65 H~~~V~~~~~sp~~~~-l~s~s~D~~v~iWd~~~~~---~~~~~~~h~~~v~~~~~s~~-g~~las~~~d~~v~iw~~~~ 139 (380)
T 3iz6_a 65 HSGKVYSLDWTPEKNW-IVSASQDGRLIVWNALTSQ---KTHAIKLHCPWVMECAFAPN-GQSVACGGLDSACSIFNLSS 139 (380)
T ss_dssp CSSCEEEEEECTTSSC-EEEEETTSEEEEEETTTTE---EEEEEECCCTTCCCCEECTT-SSEEEECCSSSCCEEEECCC
T ss_pred cccEEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCc---cceEEecCCCCEEEEEECCC-CCEEEEeeCCCcEEEEECCC
Confidence 4456789999986554 4555567788888887653 23344444456788899975 45555666677777777643
Q ss_pred CceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEec-----CCCCCceE
Q psy13635 149 KKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVN-----TDLVEPRA 223 (357)
Q Consensus 149 ~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~-----~~~~~P~g 223 (357)
..... ......+.+ ..--.....+++.+..+..+++....+.|...++.......... ........
T Consensus 140 ~~~~~---~~~~~~~~~------~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~ 210 (380)
T 3iz6_a 140 QADRD---GNMPVSRVL------TGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLS 210 (380)
T ss_dssp CSSCC---CSSTTCCBC------CCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEE
T ss_pred Ccccc---CCccceeec------cCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEE
Confidence 21100 000000000 00001233344444445555566677788888876544333331 12334667
Q ss_pred EEEeCCCCEEEEEeCCCCCCeEEEEecCC-CceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEe
Q psy13635 224 ITLSPAHGYLFWSDWNEKRPKIERSLLNG-GERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELI 302 (357)
Q Consensus 224 iavd~~~g~Ly~~d~~~~~~~I~~~~~dg-~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~ 302 (357)
+++.+.++.++.+-... +.|...++.. ......+...-.....+++.+ ++..+++-...+.|...+..........
T Consensus 211 ~~~~~~~~~~l~sgs~D--~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~~~~~~~ 287 (380)
T 3iz6_a 211 LSINSLNANMFISGSCD--TTVRLWDLRITSRAVRTYHGHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTGHQLQVY 287 (380)
T ss_dssp EEECSSSCCEEEEEETT--SCEEEEETTTTCCCCEEECCCSSCCCEEEECT-TSSEEEEECSSSCEEEEETTTTEEEEEE
T ss_pred EEeecCCCCEEEEEECC--CeEEEEECCCCCcceEEECCcCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCCcEEEEe
Confidence 88877667676666553 4777777652 222222333344568999985 4555666677788999988654433333
Q ss_pred cCC-------CCceEEEEEE-CCEEEEEeCCCCeEEEEeCccCceeEEE
Q psy13635 303 NEN-------LPHVFGISLL-GDYVYWTDWQRRSIDRVNKITGNDREVI 343 (357)
Q Consensus 303 ~~~-------~~~p~gia~~-~~~ly~td~~~~~I~~~~~~~g~~~~~i 343 (357)
... ......+++. .+.+.++-...+.|+..+..+++....+
T Consensus 288 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~ 336 (380)
T 3iz6_a 288 NREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL 336 (380)
T ss_dssp CCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred cccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEE
Confidence 211 1124567775 4556666666788888887566655444
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.04 Score=55.13 Aligned_cols=243 Identities=12% Similarity=0.125 Sum_probs=134.2
Q ss_pred cEEEEEEEccCCEEEEE-eCCC---CeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCC----------
Q psy13635 72 EGAAIDYYYKKSMVCWT-DHGT---EMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSE---------- 137 (357)
Q Consensus 72 ~~~~i~~d~~~~~ly~~-d~~~---~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~---------- 137 (357)
...++.+++++.+|-++ +... ..|+..++++... ....+. +. .-.+++.. .++.||++...
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~--~~~~~~-~~-k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQP--LETPLK-DV-KFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSE--EEEEEE-EE-ESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCC--CccccC-Cc-eeccEEEe-CCCEEEEEEecCccccccccc
Confidence 46678899988877555 4332 3688899987751 111121 11 11345555 57778887643
Q ss_pred --CCEEEEEEcCCCce--EEEEecCCC-CcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC---CCeEEEEEcCCC-
Q psy13635 138 --TNKLEVSSLDGKKR--KVLYWEDID-QPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG---TDRIEVCRLEGT- 208 (357)
Q Consensus 138 --~~~I~~~~~~g~~~--~~~~~~~~~-~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~---~~~I~~~~~~g~- 208 (357)
..+|++.++..... +.+.... . .+ ..-.++++.+.++.|+++... .+.|+..++++.
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~-~~~~-------------~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~ 270 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAI-PAQH-------------HRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN 270 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCS-GGGC-------------CSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT
T ss_pred CCCcEEEEEECCCCcccceEEEecC-CCCC-------------eEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC
Confidence 24577777654322 2232111 0 00 012356777777778766432 248899987654
Q ss_pred -ceEEEecCCCCCceEEEEeCCCCEEEEEeCCC-CCCeEEEEecCCCce---EEEeeCCCCCceEEEEecCCCEEEEEeC
Q psy13635 209 -HRKVLVNTDLVEPRAITLSPAHGYLFWSDWNE-KRPKIERSLLNGGER---VLLVKDRLGWPNGITLDVDNEKLYWCDA 283 (357)
Q Consensus 209 -~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~-~~~~I~~~~~dg~~~---~~~~~~~l~~P~giaid~~~~~lY~~d~ 283 (357)
....+.... ..-... +++.++.||+..... .+.+|+++++++... +.++...-... .+++.++.|+++..
T Consensus 271 ~~~~~l~~~~-~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~---~~s~~g~~lv~~~~ 345 (693)
T 3iuj_A 271 APLLTVQGDL-DADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL---TVHSGSGYLFAEYM 345 (693)
T ss_dssp CCCEEEECSS-SSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE---EEEEETTEEEEEEE
T ss_pred CceEEEeCCC-CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE---EEEEECCEEEEEEE
Confidence 333443322 221222 455578888776442 247999999987654 55554432222 44456788887754
Q ss_pred CC--CeEEEEeCCCCCeEEEecCCCCceEEEEEE--CCEEEEEeC---CCCeEEEEeCccCc
Q psy13635 284 KT--DKIEMIDFDGNNRRELINENLPHVFGISLL--GDYVYWTDW---QRRSIDRVNKITGN 338 (357)
Q Consensus 284 ~~--~~I~~~~~dG~~~~~i~~~~~~~p~gia~~--~~~ly~td~---~~~~I~~~~~~~g~ 338 (357)
.. .+|+.++++|...+.+.........+++.. ++.++++-. ..++|+.++..+|+
T Consensus 346 ~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 346 VDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp ETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred ECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 43 478999999876655532222222333332 345554422 22678888764444
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.043 Score=53.90 Aligned_cols=280 Identities=11% Similarity=0.003 Sum_probs=157.7
Q ss_pred EEeecCCCCeEEEEEe-CCcEEEEEcCCCC-cceE-eccCCCcEEEEEEEccCCEEEEEeCCC---CeEEEEEcCCCCcc
Q psy13635 33 YALSHHVAAQMLLFAT-SKDIRIANLSRPL-KPVT-IIKDLEEGAAIDYYYKKSMVCWTDHGT---EMISCCTFDGNNVG 106 (357)
Q Consensus 33 ~~~~~~~~~~~l~~~~-~~~i~~~~~~~~~-~~~~-~~~~~~~~~~i~~d~~~~~ly~~d~~~---~~I~~~~~~g~~~~ 106 (357)
.+++-++...+|.-+. ...|+..|+.... .... .........+++|++.+..|..+.... +.|+..+. |..
T Consensus 63 ~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~-~~~-- 139 (611)
T 1nr0_A 63 TVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT-GTS-- 139 (611)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT-CCB--
T ss_pred EEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC-CCC--
Confidence 3444455556665555 4568888985422 2222 223345688999999888777665433 24444432 221
Q ss_pred eeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCC
Q psy13635 107 SKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWV 186 (357)
Q Consensus 107 ~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~ 186 (357)
...+...-.....+++.+.+...+.+-...+.|...+.........+. + --.....+++.+.
T Consensus 140 --~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~-~---------------H~~~V~~v~fspd 201 (611)
T 1nr0_A 140 --NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG-E---------------HTKFVHSVRYNPD 201 (611)
T ss_dssp --CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC-C---------------CSSCEEEEEECTT
T ss_pred --cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeec-c---------------ccCceEEEEECCC
Confidence 122233334678899988666667777778888888865432222211 1 1124677888864
Q ss_pred CCeEEEEeCCCCeEEEEEcC-CCceEEEec------CCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEe
Q psy13635 187 ARNLYWTDTGTDRIEVCRLE-GTHRKVLVN------TDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLV 259 (357)
Q Consensus 187 ~~~lY~td~~~~~I~~~~~~-g~~~~~~~~------~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~ 259 (357)
+.++.+-...+.|...+.. |+....+.. .......+++++|.+..|.-+... +.|...++........+
T Consensus 202 -g~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D---~~v~lWd~~~~~~~~~~ 277 (611)
T 1nr0_A 202 -GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD---KTIKIWNVATLKVEKTI 277 (611)
T ss_dssp -SSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT---SEEEEEETTTTEEEEEE
T ss_pred -CCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCC---CeEEEEeCCCCceeeee
Confidence 4566666667788888865 443333322 223467899999875555544433 47777777654333322
Q ss_pred eCCC---CCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEE-CCEEEEEeCCCCeEEEEeCc
Q psy13635 260 KDRL---GWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLL-GDYVYWTDWQRRSIDRVNKI 335 (357)
Q Consensus 260 ~~~l---~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~-~~~ly~td~~~~~I~~~~~~ 335 (357)
.... ....++.. .+...++-...+.|...+..................++++. ++....+-...+.|...+..
T Consensus 278 ~~~~~~~~~~~~~~~---~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~ 354 (611)
T 1nr0_A 278 PVGTRIEDQQLGIIW---TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS 354 (611)
T ss_dssp ECCSSGGGCEEEEEE---CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred cCCCCccceeEEEEE---cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Confidence 2211 12234444 23344444556677777776544433444444556778876 34444444455788777765
Q ss_pred cCcee
Q psy13635 336 TGNDR 340 (357)
Q Consensus 336 ~g~~~ 340 (357)
+++..
T Consensus 355 ~~~~~ 359 (611)
T 1nr0_A 355 TGISN 359 (611)
T ss_dssp TCCEE
T ss_pred CCcee
Confidence 55543
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0028 Score=63.52 Aligned_cols=289 Identities=9% Similarity=-0.026 Sum_probs=150.4
Q ss_pred EeecCCCCeEEEEEeC----------CcEEEEEcCCCCcc--eEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcC
Q psy13635 34 ALSHHVAAQMLLFATS----------KDIRIANLSRPLKP--VTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFD 101 (357)
Q Consensus 34 ~~~~~~~~~~l~~~~~----------~~i~~~~~~~~~~~--~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~ 101 (357)
+++-+++..+|+++.. ..|+..|++++... ..+ ......++++|++..|.++. ++.|+..++.
T Consensus 64 ~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~--~~~i~~~~~~ 138 (719)
T 1z68_A 64 NYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY--QNNIYLKQRP 138 (719)
T ss_dssp EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE--TTEEEEESST
T ss_pred eEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE--CCeEEEEeCC
Confidence 4445556667777764 57899999774320 111 13456788999888887774 4688888887
Q ss_pred CCCcceeEEEEeCCc------------------CCceeEEEEcCCCeEEEEeCCCC------------------------
Q psy13635 102 GNNVGSKHNVITNGL------------------ITPDGLAIDWLTEKLYWTDSETN------------------------ 139 (357)
Q Consensus 102 g~~~~~~~~~~~~~~------------------~~p~glavd~~~~~ly~td~~~~------------------------ 139 (357)
+.. ...+...+- ....++++.|.++.|+++.....
T Consensus 139 ~g~---~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp 215 (719)
T 1z68_A 139 GDP---PFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYP 215 (719)
T ss_dssp TSC---CEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECC
T ss_pred CCC---cEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCC
Confidence 654 122221221 12257899988888877643211
Q ss_pred ---------EEEEEEcCCCceE-EEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEE--eCCC--CeEEEEE-
Q psy13635 140 ---------KLEVSSLDGKKRK-VLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWT--DTGT--DRIEVCR- 204 (357)
Q Consensus 140 ---------~I~~~~~~g~~~~-~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~t--d~~~--~~I~~~~- 204 (357)
.|...++++.... .+ .+..|..+ ...-.....+++.+. +++.++ +... ..|..++
T Consensus 216 ~~g~~~~~~~l~~~d~~~~~~~~~~---~~~~~~~~------~~~~~~~~~~~~SpD-~~~~~~~~~~~~~~~~l~~~d~ 285 (719)
T 1z68_A 216 KAGAKNPVVRIFIIDTTYPAYVGPQ---EVPVPAMI------ASSDYYFSWLTWVTD-ERVCLQWLKRVQNVSVLSICDF 285 (719)
T ss_dssp BTTSCCCEEEEEEEESSCHHHHCCE---ECCCCHHH------HTSCEEEEEEEESSS-SEEEEEEEESSTTEEEEEEEEE
T ss_pred CCCCCCCeeEEEEEECCCCCcccee---EccCCccC------CCCcceEEEeEEeCC-CeEEEEEeccccCeEEEEEEcc
Confidence 3444444433210 00 00000000 000112356677766 566555 3332 2588888
Q ss_pred ---cCCCceEEEe----cCC---CC--CceEEEEeCCCCEEEEE-eCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEE
Q psy13635 205 ---LEGTHRKVLV----NTD---LV--EPRAITLSPAHGYLFWS-DWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITL 271 (357)
Q Consensus 205 ---~~g~~~~~~~----~~~---~~--~P~giavd~~~g~Ly~~-d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giai 271 (357)
.++.....+. ... .. .+..++++|.+..|++. .......+|+..++++.....+.. +-....++..
T Consensus 286 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~-~~~~v~~~~~ 364 (719)
T 1z68_A 286 REDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITS-GKWEAINIFR 364 (719)
T ss_dssp CSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSC-SSSCEEEEEE
T ss_pred cCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEeccc-CceEEEEEEE
Confidence 6544333222 111 11 11267888876667663 322223589999988876555432 2222345555
Q ss_pred ecCCCEEEEEeCC------CCeEEEEeCCCCC--eEEEecCCCC----ceEEEEEE--CCEEEEEeCC--CCeEEEEeCc
Q psy13635 272 DVDNEKLYWCDAK------TDKIEMIDFDGNN--RRELINENLP----HVFGISLL--GDYVYWTDWQ--RRSIDRVNKI 335 (357)
Q Consensus 272 d~~~~~lY~~d~~------~~~I~~~~~dG~~--~~~i~~~~~~----~p~gia~~--~~~ly~td~~--~~~I~~~~~~ 335 (357)
. .++.||++... ...++.++.++.. .+.+ ...+. ....+++. ++.++++... ...++..+..
T Consensus 365 ~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l-~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~ 442 (719)
T 1z68_A 365 V-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCV-TCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGR 442 (719)
T ss_dssp E-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEES-STTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSS
T ss_pred E-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceec-cCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECC
Confidence 4 68889888754 3578888885542 2322 21111 12234443 3455544322 2355666665
Q ss_pred cCceeEEE
Q psy13635 336 TGNDREVI 343 (357)
Q Consensus 336 ~g~~~~~i 343 (357)
+|+...++
T Consensus 443 ~g~~~~~~ 450 (719)
T 1z68_A 443 TDQEIKIL 450 (719)
T ss_dssp SCCEEEEE
T ss_pred CCCEEEEe
Confidence 66654444
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00057 Score=66.02 Aligned_cols=114 Identities=17% Similarity=0.184 Sum_probs=82.3
Q ss_pred cccccCCceEEEeCCCCeEEEEeCCC---------------------CeEEEEEcCCCc-------eEEEe-c-------
Q psy13635 172 TIEVEHPDGVAVDWVARNLYWTDTGT---------------------DRIEVCRLEGTH-------RKVLV-N------- 215 (357)
Q Consensus 172 ~~~~~~p~glavD~~~~~lY~td~~~---------------------~~I~~~~~~g~~-------~~~~~-~------- 215 (357)
...+..|+++++++.++.+|++-.++ +.|++...++.. -..++ .
T Consensus 380 AT~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~ 459 (592)
T 4a9v_A 380 ATRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHA 459 (592)
T ss_dssp CCCEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTST
T ss_pred CccccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCcccc
Confidence 45567899999999999999986431 578888876432 12222 1
Q ss_pred -------------CCCCCceEEEEeCCCCEEEE-EeCCC---------CCCeEEEEecCCCceEEEeeC-CCCCceEEEE
Q psy13635 216 -------------TDLVEPRAITLSPAHGYLFW-SDWNE---------KRPKIERSLLNGGERVLLVKD-RLGWPNGITL 271 (357)
Q Consensus 216 -------------~~~~~P~giavd~~~g~Ly~-~d~~~---------~~~~I~~~~~dg~~~~~~~~~-~l~~P~giai 271 (357)
..+..|.+|++|+. |.||+ +|... .+..+++.+.+......++.. ....|+|+++
T Consensus 460 ~~~~~g~~~~~~~~~fnsPDnL~fd~~-G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiaf 538 (592)
T 4a9v_A 460 GTPKGGSSNITPQNMFNSPDGLGFDKA-GRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISF 538 (592)
T ss_dssp TSGGGCCTTCCTTTCCCCEEEEEECTT-CCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEE
T ss_pred cccccCccCccccCccCCCCceEECCC-CCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEE
Confidence 12688999999975 99999 77531 124899999865555555543 3578999999
Q ss_pred ecCCCEEEEEeCCCC
Q psy13635 272 DVDNEKLYWCDAKTD 286 (357)
Q Consensus 272 d~~~~~lY~~d~~~~ 286 (357)
.+++..||++-+.-+
T Consensus 539 SPD~ktLfV~vQHPG 553 (592)
T 4a9v_A 539 SPDQKTLFVGIQHPG 553 (592)
T ss_dssp CTTSSEEEEEEESTT
T ss_pred CCCCCEEEEEEeCCC
Confidence 999999999875443
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.033 Score=50.59 Aligned_cols=260 Identities=11% Similarity=0.062 Sum_probs=153.6
Q ss_pred cCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcC
Q psy13635 68 KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD 147 (357)
Q Consensus 68 ~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~ 147 (357)
.......++++.+.... ..+-..++.|...+..... ....+.........+++.+ .+....+-...+.|...++.
T Consensus 62 gH~~~V~~~~~s~d~~~-l~s~s~Dg~v~vWd~~~~~---~~~~~~~~~~~v~~~~~sp-~g~~lasg~~d~~i~v~~~~ 136 (354)
T 2pbi_B 62 GHGNKVLCMDWCKDKRR-IVSSSQDGKVIVWDSFTTN---KEHAVTMPCTWVMACAYAP-SGCAIACGGLDNKCSVYPLT 136 (354)
T ss_dssp CCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTCC---EEEEEECSSSCCCEEEECT-TSSEEEEESTTSEEEEEECC
T ss_pred CCCCeEEEEEECCCCCE-EEEEeCCCeEEEEECCCCC---cceEEecCCCCEEEEEECC-CCCEEEEeeCCCCEEEEEEe
Confidence 34456789999986554 4555667788888876553 2333444445678899997 45566666677888887764
Q ss_pred CCc-------eEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCC
Q psy13635 148 GKK-------RKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVE 220 (357)
Q Consensus 148 g~~-------~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~ 220 (357)
... ...+.. -......+++.+.+..|+ +-...+.|...++...............
T Consensus 137 ~~~~~~~~~~~~~~~~-----------------h~~~v~~~~~~~~~~~l~-t~s~D~~v~lwd~~~~~~~~~~~~h~~~ 198 (354)
T 2pbi_B 137 FDKNENMAAKKKSVAM-----------------HTNYLSACSFTNSDMQIL-TASGDGTCALWDVESGQLLQSFHGHGAD 198 (354)
T ss_dssp CCTTCCSGGGCEEEEE-----------------CSSCEEEEEECSSSSEEE-EEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred ccccccccccceeeec-----------------cCCcEEEEEEeCCCCEEE-EEeCCCcEEEEeCCCCeEEEEEcCCCCC
Confidence 321 111110 012345677776555555 5555678888887754433333333345
Q ss_pred ceEEEEeCC-CCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeE
Q psy13635 221 PRAITLSPA-HGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRR 299 (357)
Q Consensus 221 P~giavd~~-~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~ 299 (357)
...+++.|. .|.++++-... +.|...++........+...-....++++.+.+. ++++-...+.|...++......
T Consensus 199 v~~~~~~~~~~g~~l~sgs~D--g~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~v~lwd~~~~~~~ 275 (354)
T 2pbi_B 199 VLCLDLAPSETGNTFVSGGCD--KKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGD-AFASGSDDATCRLYDLRADREV 275 (354)
T ss_dssp EEEEEECCCSSCCEEEEEETT--SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEE
T ss_pred eEEEEEEeCCCCCEEEEEeCC--CeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEE
Confidence 677888764 24444444332 5888888776554444444445678999986554 4455556678888888665443
Q ss_pred EEecCC--CCceEEEEEE-CCEEEEEeCCCCeEEEEeCccCceeEEEecccCCceee
Q psy13635 300 ELINEN--LPHVFGISLL-GDYVYWTDWQRRSIDRVNKITGNDREVIIERSCTGVTR 353 (357)
Q Consensus 300 ~i~~~~--~~~p~gia~~-~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~i 353 (357)
...... ......+++. .+.+..+-...+.|...+..+|+....+...-.....+
T Consensus 276 ~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l 332 (354)
T 2pbi_B 276 AIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTL 332 (354)
T ss_dssp EEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEE
T ss_pred EEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEE
Confidence 333221 2234566665 35555555566788888876777666654443333333
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0015 Score=59.62 Aligned_cols=237 Identities=8% Similarity=-0.047 Sum_probs=124.4
Q ss_pred EeecCCCCeEEEEEe-CCcEEEEEcCCC--CcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEE
Q psy13635 34 ALSHHVAAQMLLFAT-SKDIRIANLSRP--LKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHN 110 (357)
Q Consensus 34 ~~~~~~~~~~l~~~~-~~~i~~~~~~~~--~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~ 110 (357)
+++-++...+|+.+. ...|+..++.+. ..............++++.+.++.|..+ ..++.|+..++..........
T Consensus 16 ~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-s~d~~v~vwd~~~~~~~~~~~ 94 (377)
T 3dwl_C 16 EHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTC-SQDRNAYVYEKRPDGTWKQTL 94 (377)
T ss_dssp CCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEE-ETTSSEEEC------CCCCEE
T ss_pred EEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEE-eCCCeEEEEEcCCCCceeeee
Confidence 334444555666553 456777787653 1222222345568899999876555544 455677777776542001123
Q ss_pred EEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCc----eEEEEecCCCCcceeeeeccCcccccCCceEEEeCC
Q psy13635 111 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKK----RKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWV 186 (357)
Q Consensus 111 ~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~----~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~ 186 (357)
.+...-.....+++.+.++.|+.+. ..+.|...+++... ...+. .. .-.....+++.+.
T Consensus 95 ~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~-~~---------------h~~~v~~~~~~~~ 157 (377)
T 3dwl_C 95 VLLRLNRAATFVRWSPNEDKFAVGS-GARVISVCYFEQENDWWVSKHLK-RP---------------LRSTILSLDWHPN 157 (377)
T ss_dssp ECCCCSSCEEEEECCTTSSCCEEEE-SSSCEEECCC-----CCCCEEEC-SS---------------CCSCEEEEEECTT
T ss_pred EecccCCceEEEEECCCCCEEEEEe-cCCeEEEEEECCcccceeeeEee-cc---------------cCCCeEEEEEcCC
Confidence 3333445677888887555555444 46788887776543 22221 10 1124677888875
Q ss_pred CCeEEEEeCCCCeEEEEEcCCCc----------------eEEEec-CCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEe
Q psy13635 187 ARNLYWTDTGTDRIEVCRLEGTH----------------RKVLVN-TDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSL 249 (357)
Q Consensus 187 ~~~lY~td~~~~~I~~~~~~g~~----------------~~~~~~-~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~ 249 (357)
+..|. +....+.|...++.... ...+.. ........++++|.+..|+.+... +.|...+
T Consensus 158 ~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~i~iwd 233 (377)
T 3dwl_C 158 NVLLA-AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHD---SSVTIAY 233 (377)
T ss_dssp SSEEE-EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETT---TEEC-CE
T ss_pred CCEEE-EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCC---CcEEEEE
Confidence 54444 44445678777764111 111111 233457899999876666666544 4777777
Q ss_pred cCCCce----EEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCC
Q psy13635 250 LNGGER----VLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFD 294 (357)
Q Consensus 250 ~dg~~~----~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~d 294 (357)
+..... ...+.........+++.+. +++..+-. .+.+...+.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~-~~~~~~~~~~ 280 (377)
T 3dwl_C 234 PSAPEQPPRALITVKLSQLPLRSLLWANE-SAIVAAGY-NYSPILLQGN 280 (377)
T ss_dssp ECSTTSCEEECCCEECSSSCEEEEEEEET-TEEEEEES-SSSEEEECCC
T ss_pred CCCCCCcceeeEeecCCCCceEEEEEcCC-CCEEEEEc-CCcEEEEEeC
Confidence 665543 1122233344678999854 55555544 3444466655
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.04 Score=50.68 Aligned_cols=245 Identities=9% Similarity=0.057 Sum_probs=141.0
Q ss_pred CCeEEEEEe-CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCC
Q psy13635 40 AAQMLLFAT-SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLIT 118 (357)
Q Consensus 40 ~~~~l~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 118 (357)
...+++.+. ...|+..|+.................++++++.+..|+ +-..++.|+..++.... ....+...-..
T Consensus 108 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~s~d~~i~iwd~~~~~---~~~~~~~h~~~ 183 (420)
T 3vl1_A 108 QMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALI-SSSQDMQLKIWSVKDGS---NPRTLIGHRAT 183 (420)
T ss_dssp SSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEE-EEETTSEEEEEETTTCC---CCEEEECCSSC
T ss_pred CCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEE-EEeCCCeEEEEeCCCCc---CceEEcCCCCc
Confidence 344455554 45688899876433333335667789999998666554 55566789999987653 13334444456
Q ss_pred ceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeecc-C-------cccccCCceEEEeCCCCeE
Q psy13635 119 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKL-P-------TIEVEHPDGVAVDWVARNL 190 (357)
Q Consensus 119 p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~-~-------~~~~~~p~glavD~~~~~l 190 (357)
...+++.+.++.|+ +-...+.|...++..................+..+.+ + .........+++++.+ .+
T Consensus 184 v~~~~~~~~~~~l~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~ 261 (420)
T 3vl1_A 184 VTDIAIIDRGRNVL-SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG-KY 261 (420)
T ss_dssp EEEEEEETTTTEEE-EEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT-EE
T ss_pred EEEEEEcCCCCEEE-EEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC-CE
Confidence 78999998655554 5556788998888755443333221111111110000 0 0001233445555444 44
Q ss_pred EEEeCCCCeEEEEEcCCCceE-EEecCCCCCceEEEEeCCCC-EEEEEeCCCCCCeEEEEecCCCc--eEEEeeCCCCCc
Q psy13635 191 YWTDTGTDRIEVCRLEGTHRK-VLVNTDLVEPRAITLSPAHG-YLFWSDWNEKRPKIERSLLNGGE--RVLLVKDRLGWP 266 (357)
Q Consensus 191 Y~td~~~~~I~~~~~~g~~~~-~~~~~~~~~P~giavd~~~g-~Ly~~d~~~~~~~I~~~~~dg~~--~~~~~~~~l~~P 266 (357)
.++....+.|...++...... .+..........++++|.+. .|+..... +.|...++.... ...+....-...
T Consensus 262 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d---g~i~vwd~~~~~~~~~~~~~~~~~~v 338 (420)
T 3vl1_A 262 VIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYEN---GMLAQWDLRSPECPVGEFLINEGTPI 338 (420)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETT---SEEEEEETTCTTSCSEEEEESTTSCE
T ss_pred EEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCC---CeEEEEEcCCCcCchhhhhccCCCCc
Confidence 455555678998888754433 33222335678999998766 55555544 588888887543 233332232334
Q ss_pred eEEEEecCCCEEEEEeCCCCeEEEEeCCC
Q psy13635 267 NGITLDVDNEKLYWCDAKTDKIEMIDFDG 295 (357)
Q Consensus 267 ~giaid~~~~~lY~~d~~~~~I~~~~~dG 295 (357)
..+... ++.++++-...+.|...++..
T Consensus 339 ~~~~~~--~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 339 NNVYFA--AGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp EEEEEE--TTEEEEEETTTEEEEEEEECC
T ss_pred eEEEeC--CCCEEEEecCCccEEEEeccC
Confidence 556553 566777777777887777644
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.034 Score=49.76 Aligned_cols=260 Identities=6% Similarity=-0.076 Sum_probs=139.9
Q ss_pred cCCCcEEEEEEEccC--CEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEE
Q psy13635 68 KDLEEGAAIDYYYKK--SMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSS 145 (357)
Q Consensus 68 ~~~~~~~~i~~d~~~--~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~ 145 (357)
..-.....+++++.+ +.+.++-..++.|...+++.... .....+...-.....+++.+.++.|+ +-..++.|...+
T Consensus 37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~v~iwd 114 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-TIPKAQQMHTGPVLDVCWSDDGSKVF-TASCDKTAKMWD 114 (368)
T ss_dssp CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-EEEEEEEECSSCEEEEEECTTSSEEE-EEETTSEEEEEE
T ss_pred CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-eeEEEeccccCCEEEEEECcCCCEEE-EEcCCCcEEEEE
Confidence 455678999999876 67777777778888888875320 11234444455678999997555454 555678999999
Q ss_pred cCCCceEEEEecCCCCcceeeeeccCcccccCCceEEE--eCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceE
Q psy13635 146 LDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAV--DWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRA 223 (357)
Q Consensus 146 ~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glav--D~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~g 223 (357)
++......+.... .....+++ ++ .+.++++....+.|...++............ .....
T Consensus 115 ~~~~~~~~~~~~~-----------------~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~ 175 (368)
T 3mmy_A 115 LSSNQAIQIAQHD-----------------APVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP-ERCYC 175 (368)
T ss_dssp TTTTEEEEEEECS-----------------SCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEEECS-SCEEE
T ss_pred cCCCCceeecccc-----------------CceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEEecC-CCceE
Confidence 8876554433211 24566777 53 4455556556678888887644332222211 23333
Q ss_pred EEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeC-CC-CCceEEEEecCCC---EEEEEeCCCCeEEEEeCCCCC-
Q psy13635 224 ITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKD-RL-GWPNGITLDVDNE---KLYWCDAKTDKIEMIDFDGNN- 297 (357)
Q Consensus 224 iavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~-~l-~~P~giaid~~~~---~lY~~d~~~~~I~~~~~dG~~- 297 (357)
+... ...++.+... +.+...+++.......... .. .....+++..... ..+++-...+.|...+.+...
T Consensus 176 ~~~~--~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~ 250 (368)
T 3mmy_A 176 ADVI--YPMAVVATAE---RGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP 250 (368)
T ss_dssp EEEE--TTEEEEEEGG---GCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCH
T ss_pred EEec--CCeeEEEeCC---CcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCc
Confidence 3333 4566666554 3566666654433222111 11 1122333321111 113333345666666665432
Q ss_pred ---eEEEecCCCC------------ceEEEEEE-CCEEEEEeCCCCeEEEEeCccCceeEEEecccCCceeee
Q psy13635 298 ---RRELINENLP------------HVFGISLL-GDYVYWTDWQRRSIDRVNKITGNDREVIIERSCTGVTRR 354 (357)
Q Consensus 298 ---~~~i~~~~~~------------~p~gia~~-~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~i~ 354 (357)
...+.. ... ....+++. .+.+.++-...+.|...+..+++....+.........+.
T Consensus 251 ~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 322 (368)
T 3mmy_A 251 AKDNFTFKC-HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACC 322 (368)
T ss_dssp HHHSEEEEC-SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEE
T ss_pred cccceeeee-eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEE
Confidence 111111 111 35667776 344445555667888888877776665554333344443
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.011 Score=59.77 Aligned_cols=246 Identities=8% Similarity=0.032 Sum_probs=139.0
Q ss_pred CcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCC-CeEEEEeCCCCEEEEEEcCCC
Q psy13635 71 EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT-EKLYWTDSETNKLEVSSLDGK 149 (357)
Q Consensus 71 ~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~-~~ly~td~~~~~I~~~~~~g~ 149 (357)
....++++++.+..|. +...++.|...++.+... .....+...-....++++.+.. +.+.++-..++.|...++++.
T Consensus 10 ~~V~~l~~s~dg~~la-tg~~dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~ 87 (753)
T 3jro_A 10 ELIHDAVLDYYGKRLA-TCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG 87 (753)
T ss_dssp CCEEEECCCSSSCCEE-EEETTTEEEEEEEETTEE-EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT
T ss_pred ceeEEEEECCCCCeEE-EEECCCcEEEEecCCCCC-ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC
Confidence 4567788887655554 444567777777764321 1122333334456788887542 556666666788999888765
Q ss_pred ceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCC-CeEEEEeCCCCeEEEEEcCCC--ceEEEecCCCCCceEEEE
Q psy13635 150 KRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVA-RNLYWTDTGTDRIEVCRLEGT--HRKVLVNTDLVEPRAITL 226 (357)
Q Consensus 150 ~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~-~~lY~td~~~~~I~~~~~~g~--~~~~~~~~~~~~P~giav 226 (357)
....+... ...-.....+++.+.. +.++++....+.|...++... ...............+++
T Consensus 88 ~~~~~~~~--------------~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~ 153 (753)
T 3jro_A 88 RWSQIAVH--------------AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW 153 (753)
T ss_dssp EEEEEEEE--------------CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEE
T ss_pred cccccccc--------------cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEe
Confidence 42222111 0111245678887662 455555566678888887754 222223334456788899
Q ss_pred eCC-------------CCEEEEEeCCCCCCeEEEEecCCCce--E--EEeeCCCCCceEEEEecCC--CEEEEEeCCCCe
Q psy13635 227 SPA-------------HGYLFWSDWNEKRPKIERSLLNGGER--V--LLVKDRLGWPNGITLDVDN--EKLYWCDAKTDK 287 (357)
Q Consensus 227 d~~-------------~g~Ly~~d~~~~~~~I~~~~~dg~~~--~--~~~~~~l~~P~giaid~~~--~~lY~~d~~~~~ 287 (357)
+|. ...++.+... +.|...++..... . ......-....++++.+.. +.+.++-...+.
T Consensus 154 ~p~~~~~~~~~~~~~d~~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~ 230 (753)
T 3jro_A 154 APATIEEDGEHNGTKESRKFVTGGAD---NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT 230 (753)
T ss_dssp CCCC---------CGGGCCEEEEETT---SCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC
T ss_pred cCcccccccccccCCCCCEEEEEECC---CeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE
Confidence 884 3344444433 4666666654322 1 1222233456889998653 666666666778
Q ss_pred EEEEeCCCCCe---EEEec--CCCCceEEEEEE-CCEEEEEeCCCCeEEEEeCc
Q psy13635 288 IEMIDFDGNNR---RELIN--ENLPHVFGISLL-GDYVYWTDWQRRSIDRVNKI 335 (357)
Q Consensus 288 I~~~~~dG~~~---~~i~~--~~~~~p~gia~~-~~~ly~td~~~~~I~~~~~~ 335 (357)
|...+...... ..+.. .......++++. ++..+++-...+.|+..+..
T Consensus 231 I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 231 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp EEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred EEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 88888755321 11111 122234567776 45555665667788777754
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.05 Score=50.46 Aligned_cols=265 Identities=9% Similarity=0.054 Sum_probs=141.9
Q ss_pred CCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCc------ce--eEEEEeCCc------------CCceeEEEEcCC
Q psy13635 69 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNV------GS--KHNVITNGL------------ITPDGLAIDWLT 128 (357)
Q Consensus 69 ~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~------~~--~~~~~~~~~------------~~p~glavd~~~ 128 (357)
......+++|++.+..|... ..++.|...++..... .+ ....+...- .....+++.+.+
T Consensus 27 ~~~~V~~v~~s~~g~~la~g-~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATG-DKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEE-ETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred ccCcEEEEEECCCCCEEEEE-cCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 44578899999866655544 4567787777765420 00 122222222 457788998755
Q ss_pred C-eEEEEeCCCCEEEEEEcCCCceEEEEecCCC---------------C----cceeee-----eccCcccccCCceEEE
Q psy13635 129 E-KLYWTDSETNKLEVSSLDGKKRKVLYWEDID---------------Q----PRAIAS-----YKLPTIEVEHPDGVAV 183 (357)
Q Consensus 129 ~-~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~---------------~----p~~i~~-----~~~~~~~~~~p~glav 183 (357)
+ ..+.+-...+.|...++.............. - |....+ ..+....-.....+++
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 2 4555556678888877654222100000000 0 000000 0000112235678899
Q ss_pred eCCCCeEEEEeCCCCeEEEEEcC-CCceEE-E------ecCCCCCceEEEEeCCC-CEEEEEeCCCCCCeEEEEecCCCc
Q psy13635 184 DWVARNLYWTDTGTDRIEVCRLE-GTHRKV-L------VNTDLVEPRAITLSPAH-GYLFWSDWNEKRPKIERSLLNGGE 254 (357)
Q Consensus 184 D~~~~~lY~td~~~~~I~~~~~~-g~~~~~-~------~~~~~~~P~giavd~~~-g~Ly~~d~~~~~~~I~~~~~dg~~ 254 (357)
.+.+. ++++. ..+.|...++. +..... + ..........++++|.+ ..|+.+... +.|...++....
T Consensus 186 ~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d---g~i~iwd~~~~~ 260 (447)
T 3dw8_B 186 NSDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSK---GTIRLCDMRASA 260 (447)
T ss_dssp CTTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETT---SCEEEEETTTCS
T ss_pred cCCCC-EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCC---CeEEEEECcCCc
Confidence 87554 44454 57789998887 332222 1 11233457899999875 455555444 578888876554
Q ss_pred e----EEEeeCCCC------------CceEEEEecCCCEEEEEeCCCCeEEEEeCCC--CCeEEEecCC-CC--------
Q psy13635 255 R----VLLVKDRLG------------WPNGITLDVDNEKLYWCDAKTDKIEMIDFDG--NNRRELINEN-LP-------- 307 (357)
Q Consensus 255 ~----~~~~~~~l~------------~P~giaid~~~~~lY~~d~~~~~I~~~~~dG--~~~~~i~~~~-~~-------- 307 (357)
. ...+..... ....+++++.+..|..+.. +.|...+... .....+.... ..
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~ 338 (447)
T 3dw8_B 261 LCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY--LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYE 338 (447)
T ss_dssp SSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES--SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHH
T ss_pred cccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC--CeEEEEeCCCCccccceeecccccccccccccc
Confidence 3 233322222 5689999876555655544 8898888853 3332222110 00
Q ss_pred -----ceEEEEEE-CCEEEEEeCCCCeEEEEeCccCceeE
Q psy13635 308 -----HVFGISLL-GDYVYWTDWQRRSIDRVNKITGNDRE 341 (357)
Q Consensus 308 -----~p~gia~~-~~~ly~td~~~~~I~~~~~~~g~~~~ 341 (357)
....+++. ++...++-...+.|+..+..+++...
T Consensus 339 ~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 378 (447)
T 3dw8_B 339 NDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT 378 (447)
T ss_dssp TSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred ccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee
Confidence 02236665 34444666677888888886666654
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.014 Score=59.14 Aligned_cols=240 Identities=9% Similarity=-0.030 Sum_probs=134.7
Q ss_pred ecCCCCeEEEEEe-CCcEEEEEcCCC--CcceEeccCCCcEEEEEEEccC-CEEEEEeCCCCeEEEEEcCCCCcceeEEE
Q psy13635 36 SHHVAAQMLLFAT-SKDIRIANLSRP--LKPVTIIKDLEEGAAIDYYYKK-SMVCWTDHGTEMISCCTFDGNNVGSKHNV 111 (357)
Q Consensus 36 ~~~~~~~~l~~~~-~~~i~~~~~~~~--~~~~~~~~~~~~~~~i~~d~~~-~~ly~~d~~~~~I~~~~~~g~~~~~~~~~ 111 (357)
+-++...+++.+. ...|+..++.+. ..............++++.+.. +....+-..++.|+..++++... .....
T Consensus 16 ~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~-~~~~~ 94 (753)
T 3jro_A 16 VLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW-SQIAV 94 (753)
T ss_dssp CCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEE-EEEEE
T ss_pred EECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcc-ccccc
Confidence 3344445555554 456888887642 1122223345567899998752 44555555677888888876520 11223
Q ss_pred EeCCcCCceeEEEEcCC-CeEEEEeCCCCEEEEEEcCCCce--EEEEecCCCCcceeeeeccCcccccCCceEEEeCC--
Q psy13635 112 ITNGLITPDGLAIDWLT-EKLYWTDSETNKLEVSSLDGKKR--KVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWV-- 186 (357)
Q Consensus 112 ~~~~~~~p~glavd~~~-~~ly~td~~~~~I~~~~~~g~~~--~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~-- 186 (357)
..........+++.+.. +.++++-..++.|...++..... ....... ......+++++.
T Consensus 95 ~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~----------------~~~v~~l~~~p~~~ 158 (753)
T 3jro_A 95 HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH----------------AIGVNSASWAPATI 158 (753)
T ss_dssp ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECC----------------SSCEEEEEECCCC-
T ss_pred ccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecC----------------CCceEEEEecCccc
Confidence 33344567889998762 55666666788999999876521 1111111 123455666653
Q ss_pred ----------CCeEEEEeCCCCeEEEEEcCCCc----eEEEecCCCCCceEEEEeCCC--CEEEEEeCCCCCCeEEEEec
Q psy13635 187 ----------ARNLYWTDTGTDRIEVCRLEGTH----RKVLVNTDLVEPRAITLSPAH--GYLFWSDWNEKRPKIERSLL 250 (357)
Q Consensus 187 ----------~~~lY~td~~~~~I~~~~~~g~~----~~~~~~~~~~~P~giavd~~~--g~Ly~~d~~~~~~~I~~~~~ 250 (357)
++.++++....+.|...+..... .............+++++|.. +.+..+-... +.|...++
T Consensus 159 ~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~D--g~I~iwd~ 236 (753)
T 3jro_A 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD--RTCIIWTQ 236 (753)
T ss_dssp --------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESS--SCEEEEEE
T ss_pred ccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecC--CEEEEecC
Confidence 34555566666778888776432 111222234567899999873 4544444432 46777776
Q ss_pred CCCceE---EEee--CCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCC
Q psy13635 251 NGGERV---LLVK--DRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDG 295 (357)
Q Consensus 251 dg~~~~---~~~~--~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG 295 (357)
...... .+.. ..-....++++++.+.. +++-...+.|...+.+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~-l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV-LALSGGDNKVTLWKENL 285 (753)
T ss_dssp SSSSSCCBCCBSSSSCCSSCCCCEEECTTTCC-EEEECSSSCEECCBCCS
T ss_pred CCCCCcceeEEeccCCCCCceEEEEEcCCCCE-EEEEcCCCEEEEEecCC
Confidence 653211 1111 12234568899865444 44545567788877763
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=97.50 E-value=0.051 Score=48.88 Aligned_cols=272 Identities=7% Similarity=-0.005 Sum_probs=148.1
Q ss_pred CCeEEEEEe-CCcEEEEEcCCCCc-------ceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEE
Q psy13635 40 AAQMLLFAT-SKDIRIANLSRPLK-------PVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV 111 (357)
Q Consensus 40 ~~~~l~~~~-~~~i~~~~~~~~~~-------~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~ 111 (357)
..++|+-+. ...|+..|+..... ...+.........+++++.+.. ..+...++.|+..++.... ....
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~-l~s~s~D~~v~lwd~~~~~---~~~~ 113 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF-AISSSWDKTLRLWDLRTGT---TYKR 113 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE-EEEEETTSEEEEEETTSSC---EEEE
T ss_pred CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE-EEEEcCCCcEEEEECCCCc---EEEE
Confidence 344555444 45688888764211 1122334456788999885554 4565667888888887653 2333
Q ss_pred EeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCC----
Q psy13635 112 ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVA---- 187 (357)
Q Consensus 112 ~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~---- 187 (357)
+...-.....+++.+.++.|+ +-...+.|...++.+....... ... ........+++.+..
T Consensus 114 ~~~h~~~v~~v~~sp~~~~l~-s~~~d~~i~~wd~~~~~~~~~~-~~~-------------~~~~~v~~~~~~~~~~~~~ 178 (343)
T 2xzm_R 114 FVGHQSEVYSVAFSPDNRQIL-SAGAEREIKLWNILGECKFSSA-EKE-------------NHSDWVSCVRYSPIMKSAN 178 (343)
T ss_dssp EECCCSCEEEEEECSSTTEEE-EEETTSCEEEEESSSCEEEECC-TTT-------------SCSSCEEEEEECCCCCSCS
T ss_pred EcCCCCcEEEEEECCCCCEEE-EEcCCCEEEEEeccCCceeeee-ccc-------------CCCceeeeeeecccccccc
Confidence 333445678899997655554 5556788998888754322111 000 001123344554433
Q ss_pred -----CeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecC-CCceEEEeeC
Q psy13635 188 -----RNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLN-GGERVLLVKD 261 (357)
Q Consensus 188 -----~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~d-g~~~~~~~~~ 261 (357)
+.++.+-...+.|...+..+.....+. ........++++|.+..|..+... +.|...++. ..........
T Consensus 179 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~h~~~v~~~~~s~~g~~l~sgs~d---g~v~iwd~~~~~~~~~~~~~ 254 (343)
T 2xzm_R 179 KVQPFAPYFASVGWDGRLKVWNTNFQIRYTFK-AHESNVNHLSISPNGKYIATGGKD---KKLLIWDILNLTYPQREFDA 254 (343)
T ss_dssp CCCSSCCEEEEEETTSEEEEEETTTEEEEEEE-CCSSCEEEEEECTTSSEEEEEETT---CEEEEEESSCCSSCSEEEEC
T ss_pred ccCCCCCEEEEEcCCCEEEEEcCCCceeEEEc-CccccceEEEECCCCCEEEEEcCC---CeEEEEECCCCcccceeecC
Confidence 134555555678888886554443332 234567899999875555554443 577777773 2222222212
Q ss_pred CCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCe-E--EEec----------CCCCceEEEEEE-CCEEEEEeCCCC
Q psy13635 262 RLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNR-R--ELIN----------ENLPHVFGISLL-GDYVYWTDWQRR 327 (357)
Q Consensus 262 ~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~-~--~i~~----------~~~~~p~gia~~-~~~ly~td~~~~ 327 (357)
-.....+++++....|..+. .+.|...+...... . .+.. ........+++. .+....+-...+
T Consensus 255 -~~~v~~v~~sp~~~~la~~~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg 331 (343)
T 2xzm_R 255 -GSTINQIAFNPKLQWVAVGT--DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDG 331 (343)
T ss_dssp -SSCEEEEEECSSSCEEEEEE--SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTS
T ss_pred -CCcEEEEEECCCCCEEEEEC--CCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCc
Confidence 23467899986655444333 44577777644322 1 1110 111234567776 344444444567
Q ss_pred eEEEEeCccC
Q psy13635 328 SIDRVNKITG 337 (357)
Q Consensus 328 ~I~~~~~~~g 337 (357)
.|...+..+|
T Consensus 332 ~v~~w~~~~g 341 (343)
T 2xzm_R 332 VIRTFSFETS 341 (343)
T ss_dssp EEEEEEEEEE
T ss_pred eEEEEEEEcc
Confidence 7776665444
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.067 Score=50.05 Aligned_cols=258 Identities=10% Similarity=0.047 Sum_probs=148.9
Q ss_pred EEEEEe-CCcEEEEEcCCCCcceEeccCCCcEEEEEEEc-cCCEEEEEeCCCCeEEEEEcCCCCccee------------
Q psy13635 43 MLLFAT-SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYY-KKSMVCWTDHGTEMISCCTFDGNNVGSK------------ 108 (357)
Q Consensus 43 ~l~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~~~~ly~~d~~~~~I~~~~~~g~~~~~~------------ 108 (357)
.++.+. +..|+..|+..+..............++++.+ .++....+...++.|...++........
T Consensus 175 ~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 254 (464)
T 3v7d_B 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 254 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEES
T ss_pred EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEee
Confidence 343333 55788999876444444444566778888886 3556777777778888888775531100
Q ss_pred --------EEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCce
Q psy13635 109 --------HNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDG 180 (357)
Q Consensus 109 --------~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~g 180 (357)
............. +.+.++.+ ++-..++.|...++........... .-.....
T Consensus 255 ~~~~~~~~~~~~~~~~~~v~~--~~~~~~~l-~~~~~d~~i~vwd~~~~~~~~~~~~----------------~~~~v~~ 315 (464)
T 3v7d_B 255 TPEENPYFVGVLRGHMASVRT--VSGHGNIV-VSGSYDNTLIVWDVAQMKCLYILSG----------------HTDRIYS 315 (464)
T ss_dssp CGGGCTTEEEEECCCSSCEEE--EEEETTEE-EEEETTSCEEEEETTTTEEEEEECC----------------CSSCEEE
T ss_pred ccCCCeEEEEEccCccceEEE--EcCCCCEE-EEEeCCCeEEEEECCCCcEEEEecC----------------CCCCEEE
Confidence 1111112222333 34334444 4444567888888865443322211 1124667
Q ss_pred EEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEee
Q psy13635 181 VAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVK 260 (357)
Q Consensus 181 lavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~ 260 (357)
+++++.+..|+ +....+.|...++..................++++ ...|..+... +.|...++..........
T Consensus 316 ~~~~~~~~~l~-sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~d---g~v~vwd~~~~~~~~~~~ 389 (464)
T 3v7d_B 316 TIYDHERKRCI-SASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAAD---GSIRGWDANDYSRKFSYH 389 (464)
T ss_dssp EEEETTTTEEE-EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETT---SEEEEEETTTCCEEEEEE
T ss_pred EEEcCCCCEEE-EEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCC---CcEEEEECCCCceeeeec
Confidence 88887665555 54556789999986544433333344566778887 3566555544 578888887655444332
Q ss_pred CCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeE-EEecCCCCceEEEEEECCEEEEEeCCCCe
Q psy13635 261 DRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRR-ELINENLPHVFGISLLGDYVYWTDWQRRS 328 (357)
Q Consensus 261 ~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~-~i~~~~~~~p~gia~~~~~ly~td~~~~~ 328 (357)
.-.....+++.+.+..|..+. .+.|...+....... ............++++++.++.+-...+.
T Consensus 390 -~~~~~~~~~~~~~~~~l~~~~--dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~~l~~~~~~~g~ 455 (464)
T 3v7d_B 390 -HTNLSAITTFYVSDNILVSGS--ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQ 455 (464)
T ss_dssp -CTTCCCEEEEEECSSEEEEEE--TTEEEEEETTTCCEEESCTTTTCSEEEEEEEETTEEEEEEEETTE
T ss_pred -CCCCccEEEEEeCCCEEEEec--CCeEEEEECCCCcEEehhhccCCCcEEEEEecCCEEEEEEEeCCe
Confidence 223445667775555555444 678999987654332 22233344567788888888777655444
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.082 Score=53.48 Aligned_cols=231 Identities=6% Similarity=0.042 Sum_probs=132.0
Q ss_pred cCCEEEEEeCCCC----eEEEEEc---CCC--CcceeEEEEeC-------CcCCceeEEEE-cCCCeEEEEeCCC----C
Q psy13635 81 KKSMVCWTDHGTE----MISCCTF---DGN--NVGSKHNVITN-------GLITPDGLAID-WLTEKLYWTDSET----N 139 (357)
Q Consensus 81 ~~~~ly~~d~~~~----~I~~~~~---~g~--~~~~~~~~~~~-------~~~~p~glavd-~~~~~ly~td~~~----~ 139 (357)
.++++||+....+ .++|... +|. . .+.++.. +.....+.++. +.++.|.|+.... .
T Consensus 125 ~g~~~yy~~~~~g~~~~vl~r~~~~~~~~~~~~---~~vlld~n~~a~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~ 201 (751)
T 2xe4_A 125 YGKYRYYTREVKGKPYKIYCRVFTDKEPGDVAA---EEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVY 201 (751)
T ss_dssp ETTEEEEEEECTTCCSCEEEEEETTSCTTCTTT---CEEEEEHHHHTTTCSCCEEEEEEECTTTTCEEEEEEESSSSSCE
T ss_pred ECCEEEEEEECCCCceeEEEEEcCCCCCCCCcC---CEEEechhHhccCCCeEEEeeeEecCCCCCEEEEEEeCCCCceE
Confidence 4789999865443 3777776 453 3 1333322 11134567888 8788776665332 2
Q ss_pred EEEEEEcCCC-ceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCC----CeEEEEEcCCCce--EE
Q psy13635 140 KLEVSSLDGK-KRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGT----DRIEVCRLEGTHR--KV 212 (357)
Q Consensus 140 ~I~~~~~~g~-~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~----~~I~~~~~~g~~~--~~ 212 (357)
+|++.++++. .. + ... + . ....+++..+.++.||++.... ..|++.++++... ..
T Consensus 202 ~l~v~dl~~g~~~--l-~~~------~------~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~l 263 (751)
T 2xe4_A 202 TIEFKRISDPSQT--I-ADK------V------S---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVC 263 (751)
T ss_dssp EEEEEETTCTTCC--C-CCC------E------E---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEE
T ss_pred EEEEEECCCCCEe--C-Ccc------c------c---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEE
Confidence 5999998876 41 0 000 0 0 0124566666677777765421 3688899886532 23
Q ss_pred EecC-CCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCc--e--EEEeeCCCCCc-eEEEEecCCCEEEEEeC---
Q psy13635 213 LVNT-DLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGE--R--VLLVKDRLGWP-NGITLDVDNEKLYWCDA--- 283 (357)
Q Consensus 213 ~~~~-~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~--~--~~~~~~~l~~P-~giaid~~~~~lY~~d~--- 283 (357)
+... .-..-.++.++|.+..|+++........|+.+++++.. . +.+.... ..+ ..+.. ..++.||+...
T Consensus 264 v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~-~~~~~s~~~-~~g~~l~~~t~~~~ 341 (751)
T 2xe4_A 264 LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPRE-KGVRYDVQM-HGTSHLVILTNEGG 341 (751)
T ss_dssp EEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCC-TTCCEEEEE-ETTTEEEEEECTTT
T ss_pred EEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCC-CCceEEEee-eeCCEEEEEeCCCC
Confidence 3222 11233567889988888888754334689999998652 2 3333222 222 22221 35788877643
Q ss_pred -CCCeEEEEeCCC-CCeEE-EecCCCC-ceEEEEEECCEEEEEeCCCC--eEEEEeC
Q psy13635 284 -KTDKIEMIDFDG-NNRRE-LINENLP-HVFGISLLGDYVYWTDWQRR--SIDRVNK 334 (357)
Q Consensus 284 -~~~~I~~~~~dG-~~~~~-i~~~~~~-~p~gia~~~~~ly~td~~~~--~I~~~~~ 334 (357)
.+.+|++++.++ ...+. ++..... ...+++.++++|+++....+ .|+.++.
T Consensus 342 a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 342 AVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp CTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred CCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence 346899999874 33333 4443322 34567777888888765544 4667774
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=97.46 E-value=0.052 Score=48.10 Aligned_cols=264 Identities=10% Similarity=0.023 Sum_probs=147.0
Q ss_pred CCcEEEEEcCCCCc-ceE----eccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEE
Q psy13635 49 SKDIRIANLSRPLK-PVT----IIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLA 123 (357)
Q Consensus 49 ~~~i~~~~~~~~~~-~~~----~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~gla 123 (357)
+..|+..|+..... ... .......+.++++.+.+..|+ +-..++.|...+..... ................
T Consensus 60 D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~-s~~~d~~i~~~~~~~~~---~~~~~~~~~~~~~~~~ 135 (340)
T 4aow_A 60 DKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFAL-SGSWDGTLRLWDLTTGT---TTRRFVGHTKDVLSVA 135 (340)
T ss_dssp TSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEE-EEETTSEEEEEETTTTE---EEEEEECCSSCEEEEE
T ss_pred CCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEE-EEcccccceEEeecccc---eeeeecCCCCceeEEE
Confidence 45688888765321 111 222345688999998665555 44456778877777663 2333334444556666
Q ss_pred EEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCC-CeEEEEeCCCCeEEE
Q psy13635 124 IDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVA-RNLYWTDTGTDRIEV 202 (357)
Q Consensus 124 vd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~-~~lY~td~~~~~I~~ 202 (357)
+.+.+..| ++-...+.+...+..+.........+ .-.....+++.+.. +.++++....+.|..
T Consensus 136 ~~~~~~~l-~s~s~d~~~~~~d~~~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i 199 (340)
T 4aow_A 136 FSSDNRQI-VSGSRDKTIKLWNTLGVCKYTVQDES---------------HSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 199 (340)
T ss_dssp ECTTSSCE-EEEETTSCEEEECTTSCEEEEECSSS---------------CSSCEEEEEECSCSSSCEEEEEETTSCEEE
T ss_pred EeecCccc-eeecCCCeEEEEEeCCCceEEEEecc---------------ccCcccceEEccCCCCcEEEEEcCCCEEEE
Confidence 66544444 44445677777777655443332111 11123445554333 345556555667888
Q ss_pred EEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEe
Q psy13635 203 CRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCD 282 (357)
Q Consensus 203 ~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d 282 (357)
.+...................++++|....|+.+... +.|...++........... -.....+++.+ ++.+..+
T Consensus 200 ~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D---g~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~-~~~~~~~- 273 (340)
T 4aow_A 200 WNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKD---GQAMLWDLNEGKHLYTLDG-GDIINALCFSP-NRYWLCA- 273 (340)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT---CEEEEEETTTTEEEEEEEC-SSCEEEEEECS-SSSEEEE-
T ss_pred EECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCC---CeEEEEEeccCceeeeecC-CceEEeeecCC-CCceeec-
Confidence 8887655544444344567899999875555555443 5788888776554444332 23456777764 4444333
Q ss_pred CCCCeEEEEeCCCCCeEEEecC---------CCCceEEEEEE-CCEEEEEeCCCCeEEEEeCccCc
Q psy13635 283 AKTDKIEMIDFDGNNRRELINE---------NLPHVFGISLL-GDYVYWTDWQRRSIDRVNKITGN 338 (357)
Q Consensus 283 ~~~~~I~~~~~dG~~~~~i~~~---------~~~~p~gia~~-~~~ly~td~~~~~I~~~~~~~g~ 338 (357)
...+.|...+.++......... .......+++. ++...++-...+.|+.-+..+|+
T Consensus 274 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 274 ATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred cCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 3456788888776543222211 12234567775 34445555556777766665664
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.075 Score=49.50 Aligned_cols=230 Identities=9% Similarity=0.008 Sum_probs=131.1
Q ss_pred cEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCce
Q psy13635 72 EGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKR 151 (357)
Q Consensus 72 ~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~ 151 (357)
....++++ +..+++...++.|...++.... ....+...-.....+++ .+.+.++-..++.|...++.....
T Consensus 135 ~v~~~~~d---~~~l~~g~~dg~i~iwd~~~~~---~~~~~~~h~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~ 205 (435)
T 1p22_A 135 GVYCLQYD---DQKIVSGLRDNTIKIWDKNTLE---CKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVNTGEM 205 (435)
T ss_dssp CEEEEECC---SSEEEEEESSSCEEEEESSSCC---EEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEESSSCCE
T ss_pred cEEEEEEC---CCEEEEEeCCCeEEEEeCCCCe---EEEEEcCCCCcEEEEEE---CCCEEEEEcCCCeEEEEECCCCcE
Confidence 35555553 4444555566788888887653 23333333334555555 345666666778999999875543
Q ss_pred EEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceE---EEecCCCCCceEEEEeC
Q psy13635 152 KVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRK---VLVNTDLVEPRAITLSP 228 (357)
Q Consensus 152 ~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~---~~~~~~~~~P~giavd~ 228 (357)
....... ......++++ ++ .+++....+.|...+....... ............++++
T Consensus 206 ~~~~~~h----------------~~~v~~l~~~--~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~- 265 (435)
T 1p22_A 206 LNTLIHH----------------CEAVLHLRFN--NG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD- 265 (435)
T ss_dssp EEEECCC----------------CSCEEEEECC--TT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE-
T ss_pred EEEEcCC----------------CCcEEEEEEc--CC-EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC-
Confidence 3222111 1123344443 34 4445555678888887754322 2222333456677775
Q ss_pred CCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCc
Q psy13635 229 AHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPH 308 (357)
Q Consensus 229 ~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~ 308 (357)
...|+.+... +.|...++........+.........++++ ++.+ ++-...+.|...+.........+......
T Consensus 266 -~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l-~~g~~dg~i~iwd~~~~~~~~~~~~h~~~ 338 (435)
T 1p22_A 266 -DKYIVSASGD---RTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLV-VSGSSDNTIRLWDIECGACLRVLEGHEEL 338 (435)
T ss_dssp -TTEEEEEETT---SEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEE-EEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred -CCEEEEEeCC---CeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEE-EEEeCCCeEEEEECCCCCEEEEEeCCcCc
Confidence 4566666554 588888887655554444444455677764 4444 44445678999998754443344434445
Q ss_pred eEEEEEECCEEEEEeCCCCeEEEEeCccCc
Q psy13635 309 VFGISLLGDYVYWTDWQRRSIDRVNKITGN 338 (357)
Q Consensus 309 p~gia~~~~~ly~td~~~~~I~~~~~~~g~ 338 (357)
...+++++..+.... ..+.|...+..+++
T Consensus 339 v~~~~~~~~~l~sg~-~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 339 VRCIRFDNKRIVSGA-YDGKIKVWDLVAAL 367 (435)
T ss_dssp EEEEECCSSEEEEEE-TTSCEEEEEHHHHT
T ss_pred EEEEEecCCEEEEEe-CCCcEEEEECCCCC
Confidence 667777555555544 55788877764444
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0058 Score=55.62 Aligned_cols=239 Identities=10% Similarity=0.005 Sum_probs=123.0
Q ss_pred cEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCc-
Q psy13635 72 EGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKK- 150 (357)
Q Consensus 72 ~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~- 150 (357)
...++++++.+..| .+-..++.|...++++... .....+...-.....+++.+.++.|+ +-..++.|...++....
T Consensus 13 ~v~~~~~s~~g~~l-~~~~~d~~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~-s~s~d~~v~vwd~~~~~~ 89 (377)
T 3dwl_C 13 PSYEHAFNSQRTEF-VTTTATNQVELYEQDGNGW-KHARTFSDHDKIVTCVDWAPKSNRIV-TCSQDRNAYVYEKRPDGT 89 (377)
T ss_dssp CCSCCEECSSSSEE-ECCCSSSCBCEEEEETTEE-EECCCBCCCSSCEEEEEECTTTCCEE-EEETTSSEEEC------C
T ss_pred cEEEEEECCCCCEE-EEecCCCEEEEEEccCCce-EEEEEEecCCceEEEEEEeCCCCEEE-EEeCCCeEEEEEcCCCCc
Confidence 45567788755544 4444556676666665410 01112222334578899987655554 44456788888776543
Q ss_pred -eEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCc----eEEEecCCCCCceEEE
Q psy13635 151 -RKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTH----RKVLVNTDLVEPRAIT 225 (357)
Q Consensus 151 -~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~----~~~~~~~~~~~P~gia 225 (357)
....... ..-.....+++.+.+..|+.+. ..+.|...+++... ...+..........++
T Consensus 90 ~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~ 153 (377)
T 3dwl_C 90 WKQTLVLL---------------RLNRAATFVRWSPNEDKFAVGS-GARVISVCYFEQENDWWVSKHLKRPLRSTILSLD 153 (377)
T ss_dssp CCCEEECC---------------CCSSCEEEEECCTTSSCCEEEE-SSSCEEECCC-----CCCCEEECSSCCSCEEEEE
T ss_pred eeeeeEec---------------ccCCceEEEEECCCCCEEEEEe-cCCeEEEEEECCcccceeeeEeecccCCCeEEEE
Confidence 1111111 1112456777776555555444 45678887776543 3333321445688999
Q ss_pred EeCCCCEEEEEeCCCCCCeEEEEecCCCc---------------eEEEee--CCCCCceEEEEecCCCEEEEEeCCCCeE
Q psy13635 226 LSPAHGYLFWSDWNEKRPKIERSLLNGGE---------------RVLLVK--DRLGWPNGITLDVDNEKLYWCDAKTDKI 288 (357)
Q Consensus 226 vd~~~g~Ly~~d~~~~~~~I~~~~~dg~~---------------~~~~~~--~~l~~P~giaid~~~~~lY~~d~~~~~I 288 (357)
++|....|..+... +.|...++.... ...... ........+++++.+..|+.+. ..+.|
T Consensus 154 ~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i 229 (377)
T 3dwl_C 154 WHPNNVLLAAGCAD---RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAG-HDSSV 229 (377)
T ss_dssp ECTTSSEEEEEESS---SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEE-TTTEE
T ss_pred EcCCCCEEEEEeCC---CEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEe-CCCcE
Confidence 99976666665554 356655553110 111111 2233467899986655555544 56788
Q ss_pred EEEeCCCCCe----EEEecCCCCceEEEEEE-CCEEEEEeCCCCeEEEEeC
Q psy13635 289 EMIDFDGNNR----RELINENLPHVFGISLL-GDYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 289 ~~~~~dG~~~----~~i~~~~~~~p~gia~~-~~~ly~td~~~~~I~~~~~ 334 (357)
...+...... ...+.........+++. ++.+..+.... .+..++.
T Consensus 230 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~~~~~~ 279 (377)
T 3dwl_C 230 TIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNY-SPILLQG 279 (377)
T ss_dssp C-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSS-SEEEECC
T ss_pred EEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCC-cEEEEEe
Confidence 8887755433 11122233345677776 56666665443 4445544
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.086 Score=46.37 Aligned_cols=209 Identities=9% Similarity=-0.028 Sum_probs=107.3
Q ss_pred ecCCCCeEEEEEeC-CcEEEEEcCCCCcc-eE---eccCCCcEEEEEEEcc-CCEEEEEeCCCCeEEEEEcCCCCcc---
Q psy13635 36 SHHVAAQMLLFATS-KDIRIANLSRPLKP-VT---IIKDLEEGAAIDYYYK-KSMVCWTDHGTEMISCCTFDGNNVG--- 106 (357)
Q Consensus 36 ~~~~~~~~l~~~~~-~~i~~~~~~~~~~~-~~---~~~~~~~~~~i~~d~~-~~~ly~~d~~~~~I~~~~~~g~~~~--- 106 (357)
.-++...+|+.+.. ..|+..++...... .. .........++++.+. ++.++.+-..++.|...+++.....
T Consensus 18 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~ 97 (351)
T 3f3f_A 18 VYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSG 97 (351)
T ss_dssp EECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSS
T ss_pred EEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccc
Confidence 33445556666654 56888888753221 12 2245567889999885 3555555556677888887654210
Q ss_pred ---eeEEEEeCCcCCceeEEEEcCC-CeEEEEeCCCCEEEEEEcCCCce-EEEEecCCCCcceeeeec-cCcccccCCce
Q psy13635 107 ---SKHNVITNGLITPDGLAIDWLT-EKLYWTDSETNKLEVSSLDGKKR-KVLYWEDIDQPRAIASYK-LPTIEVEHPDG 180 (357)
Q Consensus 107 ---~~~~~~~~~~~~p~glavd~~~-~~ly~td~~~~~I~~~~~~g~~~-~~~~~~~~~~p~~i~~~~-~~~~~~~~p~g 180 (357)
.....+...-....++++.+.. +.++++-..++.|...++..... ..+... ..+..+. .+.........
T Consensus 98 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 172 (351)
T 3f3f_A 98 RRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLT-----SEMKVLSIPPANHLQSDFC 172 (351)
T ss_dssp CSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEE-----EEEESCSCCCSSCSCCCEE
T ss_pred cCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccc-----ccccccccccCCcccceeE
Confidence 1122333344567889998752 45555555678899988754321 110000 0000000 01122335567
Q ss_pred EEEeCC--CCeEEEEeCCCCeEEEEEcCCCceEEE--ecCCCCCceEEEEeCCCC---EEEEEeCCCCCCeEEEEecC
Q psy13635 181 VAVDWV--ARNLYWTDTGTDRIEVCRLEGTHRKVL--VNTDLVEPRAITLSPAHG---YLFWSDWNEKRPKIERSLLN 251 (357)
Q Consensus 181 lavD~~--~~~lY~td~~~~~I~~~~~~g~~~~~~--~~~~~~~P~giavd~~~g---~Ly~~d~~~~~~~I~~~~~d 251 (357)
+++.+. .+.++.+....+.+............+ ..........++++|..+ .++.+-... +.|...++.
T Consensus 173 ~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~d--g~i~iwd~~ 248 (351)
T 3f3f_A 173 LSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKD--GRIRIFKIT 248 (351)
T ss_dssp EEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETT--SCEEEEEEE
T ss_pred EEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCC--CeEEEEeCC
Confidence 777765 233444444444454443333332212 222334578999998752 444444432 456555554
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.12 Score=47.75 Aligned_cols=250 Identities=10% Similarity=0.071 Sum_probs=133.9
Q ss_pred EeecCCCCeEEEEEe-CCcEEEEEcCCCCc-----------ceEeccCC------------CcEEEEEEEccCC-EEEEE
Q psy13635 34 ALSHHVAAQMLLFAT-SKDIRIANLSRPLK-----------PVTIIKDL------------EEGAAIDYYYKKS-MVCWT 88 (357)
Q Consensus 34 ~~~~~~~~~~l~~~~-~~~i~~~~~~~~~~-----------~~~~~~~~------------~~~~~i~~d~~~~-~ly~~ 88 (357)
|+.-++...+|+.+. ...|+..++..... ........ ....++++.+.++ ..+.+
T Consensus 33 ~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s 112 (447)
T 3dw8_B 33 TVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLL 112 (447)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEE
Confidence 333444555666665 45688888875331 11222222 4577899998762 34444
Q ss_pred eCCCCeEEEEEcCCCCcc------------------------------------eeEEEE-eCCcCCceeEEEEcCCCeE
Q psy13635 89 DHGTEMISCCTFDGNNVG------------------------------------SKHNVI-TNGLITPDGLAIDWLTEKL 131 (357)
Q Consensus 89 d~~~~~I~~~~~~g~~~~------------------------------------~~~~~~-~~~~~~p~glavd~~~~~l 131 (357)
...++.|+..++...... ...... ...-.....+++.+.+ ++
T Consensus 113 ~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~ 191 (447)
T 3dw8_B 113 STNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDY-ET 191 (447)
T ss_dssp EECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTS-SE
T ss_pred eCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCC-CE
Confidence 455666666665432100 000011 2233457889999754 45
Q ss_pred EEEeCCCCEEEEEEcCC-CceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCce
Q psy13635 132 YWTDSETNKLEVSSLDG-KKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHR 210 (357)
Q Consensus 132 y~td~~~~~I~~~~~~g-~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~ 210 (357)
+.+. ..+.|...++.. .....+.... |..+ ...-.....+++++.+..++++....+.|...++.....
T Consensus 192 l~s~-~d~~i~iwd~~~~~~~~~~~~~~---~~~~------~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 261 (447)
T 3dw8_B 192 YLSA-DDLRINLWHLEITDRSFNIVDIK---PANM------EELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL 261 (447)
T ss_dssp EEEE-CSSEEEEEETTEEEEEEEEEECC---CSSG------GGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS
T ss_pred EEEe-CCCeEEEEECCCCCceeeeeecc---cccc------cccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc
Confidence 5555 689999999873 2222211100 0000 111124678888877645666666677899998775442
Q ss_pred ----EEEecCCCC------------CceEEEEeCCCCEEEEEeCCCCCCeEEEEecC--CCceEEEeeCC-CC-------
Q psy13635 211 ----KVLVNTDLV------------EPRAITLSPAHGYLFWSDWNEKRPKIERSLLN--GGERVLLVKDR-LG------- 264 (357)
Q Consensus 211 ----~~~~~~~~~------------~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~d--g~~~~~~~~~~-l~------- 264 (357)
......... ....++++|.+..|..+.. +.|...++. +.....+.... ..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~ 337 (447)
T 3dw8_B 262 CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY----LSVKVWDLNMENRPVETYQVHEYLRSKLCSLY 337 (447)
T ss_dssp SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES----SEEEEEETTCCSSCSCCEESCGGGTTTHHHHH
T ss_pred ccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC----CeEEEEeCCCCccccceeeccccccccccccc
Confidence 222222222 6789999997556665544 267667665 33222222111 00
Q ss_pred ------CceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeE
Q psy13635 265 ------WPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRR 299 (357)
Q Consensus 265 ------~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~ 299 (357)
....+++++.+..| ++-...+.|...+.......
T Consensus 338 ~~~~i~~~~~~~~s~~~~~l-~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 338 ENDCIFDKFECCWNGSDSVV-MTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp HTSGGGCCCCEEECTTSSEE-EEECSTTEEEEEETTTCCEE
T ss_pred cccccccceEEEECCCCCEE-EEeccCCEEEEEEcCCCcce
Confidence 02237887655555 56666788888888765543
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.13 Score=46.87 Aligned_cols=267 Identities=11% Similarity=0.078 Sum_probs=140.6
Q ss_pred EEEEEeC-CcEEEEEcCCCCc-ceEeccC---------CCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEE
Q psy13635 43 MLLFATS-KDIRIANLSRPLK-PVTIIKD---------LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV 111 (357)
Q Consensus 43 ~l~~~~~-~~i~~~~~~~~~~-~~~~~~~---------~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~ 111 (357)
.++++.. ..|..+|...+.. ....... ......+.+ .++.||+... ++.|+.++..... .....
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~-~g~l~a~d~~tG~--~~W~~ 129 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSE-KAQVYALNTSDGT--VAWQT 129 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEET-TSEEEEEETTTCC--EEEEE
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcC-CCEEEEEECCCCC--EEEEE
Confidence 4555553 4677888754221 1222211 111223333 3789998764 4689999986442 11222
Q ss_pred EeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEc-CCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeE
Q psy13635 112 ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSL-DGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNL 190 (357)
Q Consensus 112 ~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~-~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~l 190 (357)
-..+ ......+++ ++.+|+.. ..+.|..++. +|+..-...... + ..........+++ ++.+
T Consensus 130 ~~~~-~~~~~p~~~--~~~v~v~~-~~g~l~~~d~~tG~~~W~~~~~~---~---------~~~~~~~~~~~~~--~~~v 191 (376)
T 3q7m_A 130 KVAG-EALSRPVVS--DGLVLIHT-SNGQLQALNEADGAVKWTVNLDM---P---------SLSLRGESAPTTA--FGAA 191 (376)
T ss_dssp ECSS-CCCSCCEEE--TTEEEEEC-TTSEEEEEETTTCCEEEEEECCC-----------------CCCCCCEEE--TTEE
T ss_pred eCCC-ceEcCCEEE--CCEEEEEc-CCCeEEEEECCCCcEEEEEeCCC---C---------ceeecCCCCcEEE--CCEE
Confidence 2211 111223444 67777755 4678998887 454432221110 0 0000011223344 5677
Q ss_pred EEEeCCCCeEEEEEcC-CCceEEEecCCC------C----CceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEe
Q psy13635 191 YWTDTGTDRIEVCRLE-GTHRKVLVNTDL------V----EPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLV 259 (357)
Q Consensus 191 Y~td~~~~~I~~~~~~-g~~~~~~~~~~~------~----~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~ 259 (357)
|+.. ..+.+..+++. |+..-....... . .....+++ ++.+|+.... +.+...+....... .
T Consensus 192 ~~g~-~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~v~~~~~~---g~l~~~d~~tG~~~--w 263 (376)
T 3q7m_A 192 VVGG-DNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV--NGVVFALAYN---GNLTALDLRSGQIM--W 263 (376)
T ss_dssp EECC-TTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE--TTEEEEECTT---SCEEEEETTTCCEE--E
T ss_pred EEEc-CCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE--CCEEEEEecC---cEEEEEECCCCcEE--e
Confidence 7643 34578888864 544322221100 0 00111233 5889988754 58888887533322 2
Q ss_pred eCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEec-CCCCceEEEEEECCEEEEEeCCCCeEEEEeCccCc
Q psy13635 260 KDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELIN-ENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGN 338 (357)
Q Consensus 260 ~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~-~~~~~p~gia~~~~~ly~td~~~~~I~~~~~~~g~ 338 (357)
......+.+++++ +++||++.. .+.+..++.......-... ..........+.++.||+.+. .+.|+.++..+|+
T Consensus 264 ~~~~~~~~~~~~~--~~~l~~~~~-~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~-~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 264 KRELGSVNDFIVD--GNRIYLVDQ-NDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDS-EGYLHWINVEDGR 339 (376)
T ss_dssp EECCCCEEEEEEE--TTEEEEEET-TCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECT-TSEEEEEETTTCC
T ss_pred eccCCCCCCceEE--CCEEEEEcC-CCeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeC-CCeEEEEECCCCc
Confidence 2223456677774 889999885 4689999975433322222 111223345567899999875 4789999988888
Q ss_pred eeEEEe
Q psy13635 339 DREVII 344 (357)
Q Consensus 339 ~~~~i~ 344 (357)
......
T Consensus 340 ~~~~~~ 345 (376)
T 3q7m_A 340 FVAQQK 345 (376)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 765543
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.12 Score=46.50 Aligned_cols=283 Identities=11% Similarity=-0.029 Sum_probs=147.8
Q ss_pred cCCCCeEEEEEe-CCcEEEEEcCCCCcc-eE-e-ccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEE
Q psy13635 37 HHVAAQMLLFAT-SKDIRIANLSRPLKP-VT-I-IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI 112 (357)
Q Consensus 37 ~~~~~~~l~~~~-~~~i~~~~~~~~~~~-~~-~-~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~ 112 (357)
-++...+|+.+. +..|+..++.+.... .. . ........++++++.+..|.-+ ..++.|...+.+.... +....+
T Consensus 24 ~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~-s~D~~v~iw~~~~~~~-~~~~~~ 101 (345)
T 3fm0_A 24 WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASA-SFDATTCIWKKNQDDF-ECVTTL 101 (345)
T ss_dssp ECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEE-ETTSCEEEEEECCC-E-EEEEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEE-ECCCcEEEEEccCCCe-EEEEEc
Confidence 344445555544 456888887663211 11 1 2345568899999876665544 4455666666654420 112233
Q ss_pred eCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEE
Q psy13635 113 TNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYW 192 (357)
Q Consensus 113 ~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~ 192 (357)
...-.....+++.+. ++++.+-...+.|...+++..........- .........+++.+.+..|.
T Consensus 102 ~~h~~~v~~v~~sp~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-------------~~h~~~v~~~~~~p~~~~l~- 166 (345)
T 3fm0_A 102 EGHENEVKSVAWAPS-GNLLATCSRDKSVWVWEVDEEDEYECVSVL-------------NSHTQDVKHVVWHPSQELLA- 166 (345)
T ss_dssp CCCSSCEEEEEECTT-SSEEEEEETTSCEEEEEECTTSCEEEEEEE-------------CCCCSCEEEEEECSSSSCEE-
T ss_pred cCCCCCceEEEEeCC-CCEEEEEECCCeEEEEECCCCCCeEEEEEe-------------cCcCCCeEEEEECCCCCEEE-
Confidence 333456788999974 555566666788888887654321111100 01112356677876555444
Q ss_pred EeCCCCeEEEEEcCCCceE--EEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCce-----------EEE-
Q psy13635 193 TDTGTDRIEVCRLEGTHRK--VLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGER-----------VLL- 258 (357)
Q Consensus 193 td~~~~~I~~~~~~g~~~~--~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~-----------~~~- 258 (357)
+-...+.|...+....... ............++++|.+..|..+..... -+|+.....+... ..+
T Consensus 167 s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~-v~iW~~~~~~~~~~~~~~~~~~~~~~~~ 245 (345)
T 3fm0_A 167 SASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT-VRIWRQYLPGNEQGVACSGSDPSWKCIC 245 (345)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEEEECTTCTTCCCCC---CEEEEEE
T ss_pred EEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe-EEEeccccCCCCccceeeccCCccceeE
Confidence 4444567777766544321 222333456789999997666665554432 3555544333211 111
Q ss_pred -eeC-CCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCC-----eEE----EecCCCCceEEEEEEC--CEEEEEeCC
Q psy13635 259 -VKD-RLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNN-----RRE----LINENLPHVFGISLLG--DYVYWTDWQ 325 (357)
Q Consensus 259 -~~~-~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~-----~~~----i~~~~~~~p~gia~~~--~~ly~td~~ 325 (357)
... .......++..+.++.|..+ ...+.|...+.+... ... ...........+++.. ..++.+-..
T Consensus 246 ~~~~~h~~~v~~v~~~~~~~~l~s~-~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~ 324 (345)
T 3fm0_A 246 TLSGFHSRTIYDIAWCQLTGALATA-CGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSD 324 (345)
T ss_dssp EECSSCSSCEEEEEECTTTCCEEEE-ETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEET
T ss_pred EecCCCCCcEEEEEEecCCCEEEEE-eCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCC
Confidence 111 12345678887655555444 445667766654321 111 1112233456677763 246666666
Q ss_pred CCeEEEEeCccCc
Q psy13635 326 RRSIDRVNKITGN 338 (357)
Q Consensus 326 ~~~I~~~~~~~g~ 338 (357)
.++|..-+..+++
T Consensus 325 Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 325 DGEVAFWKYQRPE 337 (345)
T ss_dssp TSCEEEEEECC--
T ss_pred CCcEEEEEecCCC
Confidence 6776655543333
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.17 Score=47.16 Aligned_cols=250 Identities=7% Similarity=0.025 Sum_probs=139.3
Q ss_pred CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCC
Q psy13635 49 SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 128 (357)
Q Consensus 49 ~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~ 128 (357)
...|+..|+.................+++++ ++. +++...++.|...++.... ....+.........+++| +
T Consensus 178 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~-l~s~s~dg~i~~wd~~~~~---~~~~~~~~~~~v~~~~~~--~ 249 (445)
T 2ovr_B 178 DRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKR-VVSGSRDATLRVWDIETGQ---CLHVLMGHVAAVRCVQYD--G 249 (445)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTE-EEEEETTSEEEEEESSSCC---EEEEEECCSSCEEEEEEC--S
T ss_pred CCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCE-EEEEeCCCEEEEEECCCCc---EEEEEcCCcccEEEEEEC--C
Confidence 4578889987644333333445567788886 344 4455566788888887653 233343344455666663 4
Q ss_pred CeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCC
Q psy13635 129 EKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGT 208 (357)
Q Consensus 129 ~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~ 208 (357)
+. +++-..++.|...++............ -.....+++| +.. +++....+.|...++...
T Consensus 250 ~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~----------------~~~v~~~~~~--~~~-l~~~~~d~~i~i~d~~~~ 309 (445)
T 2ovr_B 250 RR-VVSGAYDFMVKVWDPETETCLHTLQGH----------------TNRVYSLQFD--GIH-VVSGSLDTSIRVWDVETG 309 (445)
T ss_dssp SC-EEEEETTSCEEEEEGGGTEEEEEECCC----------------SSCEEEEEEC--SSE-EEEEETTSCEEEEETTTC
T ss_pred CE-EEEEcCCCEEEEEECCCCcEeEEecCC----------------CCceEEEEEC--CCE-EEEEeCCCeEEEEECCCC
Confidence 44 445555788888887654332222110 1123445553 344 445555678888888654
Q ss_pred ceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeC---CCCCceEEEEecCCCEEEEEeCCC
Q psy13635 209 HRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKD---RLGWPNGITLDVDNEKLYWCDAKT 285 (357)
Q Consensus 209 ~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~---~l~~P~giaid~~~~~lY~~d~~~ 285 (357)
...............++.+ ...|+.+... +.|...++........+.. .......++++ ++. .++-...
T Consensus 310 ~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~-l~s~~~d 381 (445)
T 2ovr_B 310 NCIHTLTGHQSLTSGMELK--DNILVSGNAD---STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNF-VITSSDD 381 (445)
T ss_dssp CEEEEECCCCSCEEEEEEE--TTEEEEEETT---SCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSE-EEEEETT
T ss_pred CEEEEEcCCcccEEEEEEe--CCEEEEEeCC---CeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCE-EEEEeCC
Confidence 4333333334456677776 3555555544 5788888765444333322 22345677774 344 4455567
Q ss_pred CeEEEEeCCC-CCeEEEec----CCCCceEEEEEEC-CEEEEEeCCCCe----EEEEeC
Q psy13635 286 DKIEMIDFDG-NNRRELIN----ENLPHVFGISLLG-DYVYWTDWQRRS----IDRVNK 334 (357)
Q Consensus 286 ~~I~~~~~dG-~~~~~i~~----~~~~~p~gia~~~-~~ly~td~~~~~----I~~~~~ 334 (357)
+.|...+... .....+.. .......++++.. +.+..+-...+. |..++.
T Consensus 382 g~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df 440 (445)
T 2ovr_B 382 GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 440 (445)
T ss_dssp SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred CeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEEC
Confidence 8899998754 44444421 1233456777775 444445444454 666654
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.23 Score=51.26 Aligned_cols=199 Identities=10% Similarity=-0.024 Sum_probs=123.5
Q ss_pred CCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC
Q psy13635 117 ITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG 196 (357)
Q Consensus 117 ~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~ 196 (357)
..+..+|+++.++ +..+-..++.|...+..+........ .-.....+++.+ +. +.++-..
T Consensus 18 ~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~~~~-----------------~~~~V~~l~fsp-g~-~L~S~s~ 77 (902)
T 2oaj_A 18 SKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVIKLE-----------------DRSAIKEMRFVK-GI-YLVVINA 77 (902)
T ss_dssp SCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEEECS-----------------SCCCEEEEEEET-TT-EEEEEET
T ss_pred CCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEEEcC-----------------CCCCEEEEEEcC-CC-EEEEEEC
Confidence 4578899998655 44555567889988876543322211 012457788887 44 4445555
Q ss_pred CCeEEEEEcCCCc-eEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEe-----------eCCCC
Q psy13635 197 TDRIEVCRLEGTH-RKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLV-----------KDRLG 264 (357)
Q Consensus 197 ~~~I~~~~~~g~~-~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~-----------~~~l~ 264 (357)
.+.|..-+++... ...+. .-.....++++|....|+..... +.|...++++....... .....
T Consensus 78 D~~v~lWd~~~~~~~~~~~--~~~~V~~v~~sp~g~~l~sgs~d---g~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~ 152 (902)
T 2oaj_A 78 KDTVYVLSLYSQKVLTTVF--VPGKITSIDTDASLDWMLIGLQN---GSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLS 152 (902)
T ss_dssp TCEEEEEETTTCSEEEEEE--CSSCEEEEECCTTCSEEEEEETT---SCEEEEETTTTEEEEEEECCHHHHHTCSSSCCC
T ss_pred cCeEEEEECCCCcEEEEEc--CCCCEEEEEECCCCCEEEEEcCC---CcEEEEECCCCccccceeccccccccccccCCC
Confidence 6788888887543 33332 22467899999987788887765 57888888766543211 11234
Q ss_pred CceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCC------------------CCceEEEEEE-CCEEEEEeCC
Q psy13635 265 WPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINEN------------------LPHVFGISLL-GDYVYWTDWQ 325 (357)
Q Consensus 265 ~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~------------------~~~p~gia~~-~~~ly~td~~ 325 (357)
...++++++.++.+..+-...+.| ..+.........+... ......+++. +|..+.+-..
T Consensus 153 ~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~ 231 (902)
T 2oaj_A 153 PIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHE 231 (902)
T ss_dssp CCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEET
T ss_pred CeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEEC
Confidence 567899987555555566667788 8887655433222211 1235677776 4566666666
Q ss_pred CCeEEEEeCccCceeE
Q psy13635 326 RRSIDRVNKITGNDRE 341 (357)
Q Consensus 326 ~~~I~~~~~~~g~~~~ 341 (357)
.+.|...+..+|+...
T Consensus 232 Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 232 DNSLVFWDANSGHMIM 247 (902)
T ss_dssp TCCEEEEETTTCCEEE
T ss_pred CCeEEEEECCCCcEEE
Confidence 7788888876666543
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.2 Score=45.45 Aligned_cols=259 Identities=9% Similarity=0.003 Sum_probs=131.9
Q ss_pred EEEEEe-CCcEEEEEcCCCCc-ceEecc--CCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCC-c-
Q psy13635 43 MLLFAT-SKDIRIANLSRPLK-PVTIIK--DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNG-L- 116 (357)
Q Consensus 43 ~l~~~~-~~~i~~~~~~~~~~-~~~~~~--~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~-~- 116 (357)
.+++.. ...|..+|...+.. ...... ....|. ++ ++.+|+.. .++.|+.++..... .....-... .
T Consensus 105 ~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~---~~--~~~v~v~~-~~g~l~~~d~~tG~--~~W~~~~~~~~~ 176 (376)
T 3q7m_A 105 HVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPV---VS--DGLVLIHT-SNGQLQALNEADGA--VKWTVNLDMPSL 176 (376)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCE---EE--TTEEEEEC-TTSEEEEEETTTCC--EEEEEECCC---
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCE---EE--CCEEEEEc-CCCeEEEEECCCCc--EEEEEeCCCCce
Confidence 355555 35688888764221 122211 111222 22 57777654 45678888875432 112221111 0
Q ss_pred --CCceeEEEEcCCCeEEEEeCCCCEEEEEEcC-CCceEEEEecCCCCcceeeeeccCccccc-CCceEEEeCCCCeEEE
Q psy13635 117 --ITPDGLAIDWLTEKLYWTDSETNKLEVSSLD-GKKRKVLYWEDIDQPRAIASYKLPTIEVE-HPDGVAVDWVARNLYW 192 (357)
Q Consensus 117 --~~p~glavd~~~~~ly~td~~~~~I~~~~~~-g~~~~~~~~~~~~~p~~i~~~~~~~~~~~-~p~glavD~~~~~lY~ 192 (357)
......+++ ++.+|+.. ..+.+..++.. |+..-.. .. ..|.+..- .+.+. .....+++ ++.+|+
T Consensus 177 ~~~~~~~~~~~--~~~v~~g~-~~g~l~~~d~~tG~~~w~~-~~--~~~~~~~~----~~~~~~~~~~p~~~--~~~v~~ 244 (376)
T 3q7m_A 177 SLRGESAPTTA--FGAAVVGG-DNGRVSAVLMEQGQMIWQQ-RI--SQATGSTE----IDRLSDVDTTPVVV--NGVVFA 244 (376)
T ss_dssp --CCCCCCEEE--TTEEEECC-TTTEEEEEETTTCCEEEEE-EC--CC---------------CCCCCCEEE--TTEEEE
T ss_pred eecCCCCcEEE--CCEEEEEc-CCCEEEEEECCCCcEEEEE-ec--ccCCCCcc----cccccccCCCcEEE--CCEEEE
Confidence 111334555 57777754 46788888874 4432221 11 11110000 00000 00111233 578888
Q ss_pred EeCCCCeEEEEEcC-CCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEee-CCCCCceEEE
Q psy13635 193 TDTGTDRIEVCRLE-GTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVK-DRLGWPNGIT 270 (357)
Q Consensus 193 td~~~~~I~~~~~~-g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~-~~l~~P~gia 270 (357)
... .+.+..+++. |+..-.. ....+.+++++ +++||++... +.+...+.......--.. ..-......+
T Consensus 245 ~~~-~g~l~~~d~~tG~~~w~~---~~~~~~~~~~~--~~~l~~~~~~---g~l~~~d~~tG~~~w~~~~~~~~~~~~~~ 315 (376)
T 3q7m_A 245 LAY-NGNLTALDLRSGQIMWKR---ELGSVNDFIVD--GNRIYLVDQN---DRVMALTIDGGVTLWTQSDLLHRLLTSPV 315 (376)
T ss_dssp ECT-TSCEEEEETTTCCEEEEE---CCCCEEEEEEE--TTEEEEEETT---CCEEEEETTTCCEEEEECTTTTSCCCCCE
T ss_pred Eec-CcEEEEEECCCCcEEeec---cCCCCCCceEE--CCEEEEEcCC---CeEEEEECCCCcEEEeecccCCCcccCCE
Confidence 764 4678888875 5443222 23446677777 6899999865 589999876443322222 1111222334
Q ss_pred EecCCCEEEEEeCCCCeEEEEeCC-CCCeEEEecCCCCceEEEEEECCEEEEEeCCCCeEEEEeC
Q psy13635 271 LDVDNEKLYWCDAKTDKIEMIDFD-GNNRRELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 271 id~~~~~lY~~d~~~~~I~~~~~d-G~~~~~i~~~~~~~p~gia~~~~~ly~td~~~~~I~~~~~ 334 (357)
+ .+++||+.+. .+.++.++.. |......-...........+.++.||+... .+.|+.+++
T Consensus 316 ~--~~~~l~v~~~-~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~~~l~v~~~-~G~l~~~~~ 376 (376)
T 3q7m_A 316 L--YNGNLVVGDS-EGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAK-DGTVYSITR 376 (376)
T ss_dssp E--ETTEEEEECT-TSEEEEEETTTCCEEEEEECCTTCBCSCCEEETTEEEEEBT-TSCEEEEEC
T ss_pred E--ECCEEEEEeC-CCeEEEEECCCCcEEEEEecCCCcceeCCEEECCEEEEEeC-CCEEEEEeC
Confidence 4 3789998875 5689999864 443322221111112234456899999875 477887763
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.15 Score=43.16 Aligned_cols=152 Identities=12% Similarity=0.027 Sum_probs=96.2
Q ss_pred eCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCC-------CceEEEEecCCCCcceeeeeccCcccccCCceEEEeC
Q psy13635 113 TNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG-------KKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDW 185 (357)
Q Consensus 113 ~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g-------~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~ 185 (357)
..+..+...+|++| ++.||.. .++.+++.+... .....+...+ .+.-..+.+|
T Consensus 37 ~~gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~G----------------w~~F~a~~fD- 96 (236)
T 1tl2_A 37 KGGWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGG----------------WNQFQFLFFD- 96 (236)
T ss_dssp SSSCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSC----------------GGGCSEEEEC-
T ss_pred ccccccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEecccc----------------cccceEEEEC-
Confidence 33567888999998 8999999 577899988743 1123333222 1234678889
Q ss_pred CCCeEEEEeCCCCeEEEEEc--CCCc-----eEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecC-CC----
Q psy13635 186 VARNLYWTDTGTDRIEVCRL--EGTH-----RKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLN-GG---- 253 (357)
Q Consensus 186 ~~~~lY~td~~~~~I~~~~~--~g~~-----~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~d-g~---- 253 (357)
.+|.||.. ..++|++.++ ++.. ...+...+...-..|.++|. |.||-+. . +++++-..- +.
T Consensus 97 ~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~-G~Lyav~-d---g~lyr~~~P~~~~~~w 169 (236)
T 1tl2_A 97 PNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPN-GYLYAVH-G---QQFYKALPPVSNQDNW 169 (236)
T ss_dssp TTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTT-SCEEEEE-T---TEEEEECCCSSTTCCH
T ss_pred CCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCC-ceEEEEe-C---CcEEecCCCCCCCccc
Confidence 68899988 3379999987 3332 23444445566689999985 9999998 5 367654332 11
Q ss_pred --ceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCC
Q psy13635 254 --ERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFD 294 (357)
Q Consensus 254 --~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~d 294 (357)
....+...+...-.-+.++ .++.||..+ .+++++...+
T Consensus 170 l~~~~~~g~~g~~~yr~l~f~-~~G~l~~v~--~g~~Y~~~~p 209 (236)
T 1tl2_A 170 LARATKIGQGGWDTFKFLFFS-SVGTLFGVQ--GGKFYEDYPP 209 (236)
T ss_dssp HHHCEEEESSSGGGEEEEEEC-TTSCEEEEE--TTEEEEESCC
T ss_pred ccccceeccCCcceEEEEEEC-CCCcEEEEe--CCeEEecCCc
Confidence 1122222222222224455 688888888 6788888655
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.41 Score=47.70 Aligned_cols=260 Identities=11% Similarity=0.026 Sum_probs=132.5
Q ss_pred EEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeC-C----cCCceeEEEEcCCCeEEEEeCC-----CCEEEEE
Q psy13635 75 AIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN-G----LITPDGLAIDWLTEKLYWTDSE-----TNKLEVS 144 (357)
Q Consensus 75 ~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~-~----~~~p~glavd~~~~~ly~td~~-----~~~I~~~ 144 (357)
+++++ +++||+.. .++.|+.++..... .....-.. . ........++ ++.+|+.... .+.|..+
T Consensus 123 ~~a~~--~~~v~v~~-~dg~l~alD~~tG~--~~W~~~~~~~~~~~~~~~~~p~v~--~~~v~v~~~~~~~~~~g~v~a~ 195 (677)
T 1kb0_A 123 GVALW--KGKVYVGA-WDGRLIALDAATGK--EVWHQNTFEGQKGSLTITGAPRVF--KGKVIIGNGGAEYGVRGYITAY 195 (677)
T ss_dssp CCEEE--TTEEEEEC-TTSEEEEEETTTCC--EEEEEETTTTCCSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEE
T ss_pred CceEE--CCEEEEEc-CCCEEEEEECCCCC--EEeeecCCcCcCcCcccccCcEEE--CCEEEEEecccccCCCCEEEEE
Confidence 44443 68899874 34688888885443 12222221 1 1112233454 6889987653 5789999
Q ss_pred EcC-CCceEEEEecCCCCcceeee---ec-----cC--------cccccCCceEEEeCCCCeEEEEeCCC----------
Q psy13635 145 SLD-GKKRKVLYWEDIDQPRAIAS---YK-----LP--------TIEVEHPDGVAVDWVARNLYWTDTGT---------- 197 (357)
Q Consensus 145 ~~~-g~~~~~~~~~~~~~p~~i~~---~~-----~~--------~~~~~~p~glavD~~~~~lY~td~~~---------- 197 (357)
+.. |+.+-..-... ..+..... ++ .+ ......-..+++|+..+.||+.....
T Consensus 196 D~~tG~~~W~~~~~~-~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~ 274 (677)
T 1kb0_A 196 DAETGERKWRWFSVP-GDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSP 274 (677)
T ss_dssp ETTTCCEEEEEESSC-CCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHST
T ss_pred ECCCCcEEEEeccCC-CCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCc
Confidence 875 44332221111 00000000 00 00 00000114689999999999876532
Q ss_pred --------CeEEEEEcC-CCceEEEecCC--------CCCce------------EEEEeCCCCEEEEEeCCCCCCeEEEE
Q psy13635 198 --------DRIEVCRLE-GTHRKVLVNTD--------LVEPR------------AITLSPAHGYLFWSDWNEKRPKIERS 248 (357)
Q Consensus 198 --------~~I~~~~~~-g~~~~~~~~~~--------~~~P~------------giavd~~~g~Ly~~d~~~~~~~I~~~ 248 (357)
..|..+|.+ |+.+-..-... ...|. -+.+...+|.||+-|..+. ..+++.
T Consensus 275 ~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG-~~l~~~ 353 (677)
T 1kb0_A 275 KGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG-KFISAK 353 (677)
T ss_dssp TCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC-CEEEEE
T ss_pred cCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC-CEeccc
Confidence 258888876 44332221110 12232 2333345677777776643 344554
Q ss_pred ecCCCc---------eEEE------------eeC---CCCCceEEEEecCCCEEEEEeCC--------------------
Q psy13635 249 LLNGGE---------RVLL------------VKD---RLGWPNGITLDVDNEKLYWCDAK-------------------- 284 (357)
Q Consensus 249 ~~dg~~---------~~~~------------~~~---~l~~P~giaid~~~~~lY~~d~~-------------------- 284 (357)
...... +... ... +...-.++++|+..+.+|+....
T Consensus 354 ~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~ 433 (677)
T 1kb0_A 354 NFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGK 433 (677)
T ss_dssp ESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTS
T ss_pred cccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccc
Confidence 433211 1000 000 00111378999889999986321
Q ss_pred ----------------------CCeEEEEeCCCCCeEEEecCCCCceEE--EEEECCEEEEEeCCCCeEEEEeCccCcee
Q psy13635 285 ----------------------TDKIEMIDFDGNNRRELINENLPHVFG--ISLLGDYVYWTDWQRRSIDRVNKITGNDR 340 (357)
Q Consensus 285 ----------------------~~~I~~~~~dG~~~~~i~~~~~~~p~g--ia~~~~~ly~td~~~~~I~~~~~~~g~~~ 340 (357)
.+.|..+|+......--..... .+.+ ++..++.+|+. ...+.++.++..+|+.+
T Consensus 434 ~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~~~g~~v~~g-~~dg~l~a~D~~tG~~l 511 (677)
T 1kb0_A 434 PQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQG-TADGRLVAYHAATGEKL 511 (677)
T ss_dssp TTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEE-CTTSEEEEEETTTCCEE
T ss_pred cccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCC-CCcCcceEeCCCEEEEE-CCCCcEEEEECCCCcee
Confidence 1568888875433222211111 1122 44457888887 46688999998889887
Q ss_pred EEEec
Q psy13635 341 EVIIE 345 (357)
Q Consensus 341 ~~i~~ 345 (357)
..+..
T Consensus 512 w~~~~ 516 (677)
T 1kb0_A 512 WEAPT 516 (677)
T ss_dssp EEEEC
T ss_pred eeeeC
Confidence 76643
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.42 Score=49.35 Aligned_cols=196 Identities=7% Similarity=-0.065 Sum_probs=120.0
Q ss_pred CcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCc
Q psy13635 71 EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKK 150 (357)
Q Consensus 71 ~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~ 150 (357)
..+.+++|++.+..|.. ...++.|+..+..+.. .......-.....+++.+ ++ +.++-...+.|...++....
T Consensus 18 ~~V~~lafspdg~~lAs-gs~Dg~I~lw~~~~~~----~~~~~~~~~~V~~l~fsp-g~-~L~S~s~D~~v~lWd~~~~~ 90 (902)
T 2oaj_A 18 SKPIAAAFDFTQNLLAI-ATVTGEVHIYGQQQVE----VVIKLEDRSAIKEMRFVK-GI-YLVVINAKDTVYVLSLYSQK 90 (902)
T ss_dssp SCEEEEEEETTTTEEEE-EETTSEEEEECSTTCE----EEEECSSCCCEEEEEEET-TT-EEEEEETTCEEEEEETTTCS
T ss_pred CCcEEEEECCCCCEEEE-EeCCCEEEEEeCCCcE----EEEEcCCCCCEEEEEEcC-CC-EEEEEECcCeEEEEECCCCc
Confidence 46789999997665544 4456788887776652 222223334578899997 44 44455567899999987544
Q ss_pred eEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEe-----------cCCCC
Q psy13635 151 RKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLV-----------NTDLV 219 (357)
Q Consensus 151 ~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~-----------~~~~~ 219 (357)
........ .....+++++.+..|+.... .+.|...++++....... .....
T Consensus 91 ~~~~~~~~-----------------~~V~~v~~sp~g~~l~sgs~-dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~ 152 (902)
T 2oaj_A 91 VLTTVFVP-----------------GKITSIDTDASLDWMLIGLQ-NGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLS 152 (902)
T ss_dssp EEEEEECS-----------------SCEEEEECCTTCSEEEEEET-TSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCC
T ss_pred EEEEEcCC-----------------CCEEEEEECCCCCEEEEEcC-CCcEEEEECCCCccccceeccccccccccccCCC
Confidence 32222110 14567888877777776554 578888888765542111 11234
Q ss_pred CceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCC------------------CCCceEEEEecCCCEEEEE
Q psy13635 220 EPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDR------------------LGWPNGITLDVDNEKLYWC 281 (357)
Q Consensus 220 ~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~------------------l~~P~giaid~~~~~lY~~ 281 (357)
....++++|.++.+..+-... +.| ..++........+... -....++++.+. +..+.+
T Consensus 153 ~V~sl~~sp~~~~~l~~g~~d--g~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspd-g~~las 228 (902)
T 2oaj_A 153 PIVSIQWNPRDIGTVLISYEY--VTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN-SLHIIT 228 (902)
T ss_dssp CCCEEEEETTEEEEEEEECSS--CEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTT-SSEEEE
T ss_pred CeEEEEEccCCCCEEEEEeCC--CcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCC-CCEEEE
Confidence 578999998654444444442 577 7777665443333211 134678999865 555555
Q ss_pred eCCCCeEEEEeCCC
Q psy13635 282 DAKTDKIEMIDFDG 295 (357)
Q Consensus 282 d~~~~~I~~~~~dG 295 (357)
-...+.|...+...
T Consensus 229 gs~Dg~i~lWd~~~ 242 (902)
T 2oaj_A 229 IHEDNSLVFWDANS 242 (902)
T ss_dssp EETTCCEEEEETTT
T ss_pred EECCCeEEEEECCC
Confidence 55677888888754
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.3 Score=45.10 Aligned_cols=269 Identities=7% Similarity=0.015 Sum_probs=156.6
Q ss_pred eEEEEEeCCcEEEEEcCCCCcceEec--cCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCc
Q psy13635 42 QMLLFATSKDIRIANLSRPLKPVTII--KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITP 119 (357)
Q Consensus 42 ~~l~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p 119 (357)
..|.++-++.|+..|+..+....... .......+|+|.+.+..|. +...++.|...++.... ........-...
T Consensus 117 n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~la-sgs~Dg~v~iWd~~~~~---~~~~~~~h~~~v 192 (420)
T 4gga_A 117 NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLA-VGTSSAEVQLWDVQQQK---RLRNMTSHSARV 192 (420)
T ss_dssp SEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEE-EEETTSCEEEEETTTTE---EEEEECCCSSCE
T ss_pred CEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEE-EEECCCeEEEEEcCCCc---EEEEEeCCCCce
Confidence 36667778889999987643333222 2334578999998655554 55566788888887653 222333223334
Q ss_pred eeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCe
Q psy13635 120 DGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDR 199 (357)
Q Consensus 120 ~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~ 199 (357)
..++.+ + .+..+....+.+...+............+ ......++...+.+. ...+....+.
T Consensus 193 ~~~s~~--~-~~l~sgs~d~~i~~~d~~~~~~~~~~~~~---------------h~~~~~~~~~~~~g~-~l~s~~~D~~ 253 (420)
T 4gga_A 193 GSLSWN--S-YILSSGSRSGHIHHHDVRVAEHHVATLSG---------------HSQEVCGLRWAPDGR-HLASGGNDNL 253 (420)
T ss_dssp EEEEEE--T-TEEEEEETTSEEEEEETTSSSCEEEEEEC---------------CSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred EEEeeC--C-CEEEEEeCCCceeEeeecccceeeEEecc---------------cccceeeeeecCCCC-eeeeeecccc
Confidence 444444 3 45556666778888776654433222111 112345566665444 4445555567
Q ss_pred EEEEEcCCCce----EEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCC
Q psy13635 200 IEVCRLEGTHR----KVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDN 275 (357)
Q Consensus 200 I~~~~~~g~~~----~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~ 275 (357)
|...+...... .............+++.|..+.++.+-.+...+.|...++........+.. -..+..+...+.+
T Consensus 254 v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~-~~~v~~~~~~~~~ 332 (420)
T 4gga_A 254 VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA-HSQVCSILWSPHY 332 (420)
T ss_dssp EEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC-SSCEEEEEEETTT
T ss_pred ceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc-ccceeeeeecCCC
Confidence 77776653211 111222334567888988777776665433235787778776555444433 2456788888788
Q ss_pred CEEEEEeC-CCCeEEEEeCCCCCeEEEecCCCCceEEEEEE-CCEEEEEeCCCCeEEEEeC
Q psy13635 276 EKLYWCDA-KTDKIEMIDFDGNNRRELINENLPHVFGISLL-GDYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 276 ~~lY~~d~-~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~-~~~ly~td~~~~~I~~~~~ 334 (357)
+.++.+.. ..+.|...+.........+..+-....++++. +|...+|-...++|..-+.
T Consensus 333 ~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 333 KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 393 (420)
T ss_dssp TEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred CeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 88877653 45788888876544433444445566788886 4555666556677654443
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.3 Score=44.41 Aligned_cols=197 Identities=8% Similarity=-0.045 Sum_probs=112.7
Q ss_pred EEEEEEEccCCEEEEEeC-CCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEc-CCCc
Q psy13635 73 GAAIDYYYKKSMVCWTDH-GTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSL-DGKK 150 (357)
Q Consensus 73 ~~~i~~d~~~~~ly~~d~-~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~-~g~~ 150 (357)
...++|+|++..|..+.. .++.|+..++.... ....+. .-....++++.+.++.|..+ . .+.+.++.. +|..
T Consensus 136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~---~~~~~~-~~~~V~~v~fspdg~~l~s~-s-~~~~~~~~~~~~~~ 209 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLT---EKFEIE-TRGEVKDLHFSTDGKVVAYI-T-GSSLEVISTVTGSC 209 (365)
T ss_dssp EEEEEECTTSSCEEEEESCSSCEEEEEETTTTE---EEEEEE-CSSCCCEEEECTTSSEEEEE-C-SSCEEEEETTTCCE
T ss_pred EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc---EEEEeC-CCCceEEEEEccCCceEEec-c-ceeEEEEEeccCcc
Confidence 678999998777777654 45678888887663 222222 33457899999866555444 3 344555554 3433
Q ss_pred eEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCC---eEEEEEcCCCceEE----EecCCCCCceE
Q psy13635 151 RKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTD---RIEVCRLEGTHRKV----LVNTDLVEPRA 223 (357)
Q Consensus 151 ~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~---~I~~~~~~g~~~~~----~~~~~~~~P~g 223 (357)
........ .-.....+++.+.+..+..+..... .+...+........ ...........
T Consensus 210 ~~~~~~~~---------------~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~ 274 (365)
T 4h5i_A 210 IARKTDFD---------------KNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITS 274 (365)
T ss_dssp EEEECCCC---------------TTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEE
T ss_pred eeeeecCC---------------CCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEe
Confidence 22211110 1113456777766655554433222 34445544332211 12233455789
Q ss_pred EEEeCCCCEEEEEeCCCCCCeEEEEecCCCceE-EEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCC
Q psy13635 224 ITLSPAHGYLFWSDWNEKRPKIERSLLNGGERV-LLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFD 294 (357)
Q Consensus 224 iavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~-~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~d 294 (357)
++++|.+..|..+... +.|...+....... .+....-....++++.+ ++++.++-+..+.|+..++.
T Consensus 275 ~~~Spdg~~lasgs~D---~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSp-dg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 275 MDVDMKGELAVLASND---NSIALVKLKDLSMSKIFKQAHSFAITEVTISP-DSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp EEECTTSCEEEEEETT---SCEEEEETTTTEEEEEETTSSSSCEEEEEECT-TSCEEEEEETTSEEEEEECC
T ss_pred EEECCCCCceEEEcCC---CEEEEEECCCCcEEEEecCcccCCEEEEEECC-CCCEEEEEeCCCeEEEEEcC
Confidence 9999975555555444 57888887654443 33333345578999985 55555666667788888764
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.084 Score=44.74 Aligned_cols=147 Identities=10% Similarity=-0.018 Sum_probs=92.2
Q ss_pred ccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCC-------CceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEE
Q psy13635 175 VEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEG-------THRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIER 247 (357)
Q Consensus 175 ~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g-------~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~ 247 (357)
......+|++| ++.||.. ..+.+++.++.. ...+.+-..+...=..+.+|+ +|.||... . ++|+|
T Consensus 40 w~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav~-d---G~iyr 111 (236)
T 1tl2_A 40 WSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAVS-K---DKLYK 111 (236)
T ss_dssp CTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEEE-T---TEEEE
T ss_pred cccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEeC-C---CEEEE
Confidence 45677999998 8999988 456899988743 223344333444457899997 59999993 2 59999
Q ss_pred Eec--CCCce-----EEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEe-CCCC------CeEEEecCCCCceEEEE
Q psy13635 248 SLL--NGGER-----VLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMID-FDGN------NRRELINENLPHVFGIS 313 (357)
Q Consensus 248 ~~~--dg~~~-----~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~-~dG~------~~~~i~~~~~~~p~gia 313 (357)
.+. ++... ..+...+-..-..|.++ .+|.||-.. .+++++-. +.+. ..+.+.......-.-+.
T Consensus 112 ~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~-p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~ 188 (236)
T 1tl2_A 112 ASPPQSDTDNWIARATEVGSGGWSGFKFLFFH-PNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLF 188 (236)
T ss_dssp ESCCCSTTCCHHHHSEEEECSSGGGEEEEEEC-TTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEE
T ss_pred eCCCcCCCCceeccccEeccCCCCceEEEEEC-CCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEE
Confidence 987 44322 34433344455788998 689999888 45565533 3222 12223222221111133
Q ss_pred EE-CCEEEEEeCCCCeEEEEeC
Q psy13635 314 LL-GDYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 314 ~~-~~~ly~td~~~~~I~~~~~ 334 (357)
+. ++.||..+ ++++++...
T Consensus 189 f~~~G~l~~v~--~g~~Y~~~~ 208 (236)
T 1tl2_A 189 FSSVGTLFGVQ--GGKFYEDYP 208 (236)
T ss_dssp ECTTSCEEEEE--TTEEEEESC
T ss_pred ECCCCcEEEEe--CCeEEecCC
Confidence 33 57888888 778888764
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=96.68 E-value=0.33 Score=43.45 Aligned_cols=241 Identities=13% Similarity=0.042 Sum_probs=131.2
Q ss_pred cEEEEEE-----EccCCEEEEEeCCCCeEEEEEcCCCCc----ceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEE
Q psy13635 72 EGAAIDY-----YYKKSMVCWTDHGTEMISCCTFDGNNV----GSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLE 142 (357)
Q Consensus 72 ~~~~i~~-----d~~~~~ly~~d~~~~~I~~~~~~g~~~----~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~ 142 (357)
...++++ .+.++.+..+-..++.|+..++..... ......+.........+++.+ .+.+.++-...+.|.
T Consensus 23 ~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~-~~~~l~s~s~D~~v~ 101 (343)
T 2xzm_R 23 WVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ-ENCFAISSSWDKTLR 101 (343)
T ss_dssp CEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECS-STTEEEEEETTSEEE
T ss_pred hhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECC-CCCEEEEEcCCCcEE
Confidence 4566666 443566666766677777777653321 011223333345577899986 455556666788999
Q ss_pred EEEcCCCce-EEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEec--CCCC
Q psy13635 143 VSSLDGKKR-KVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVN--TDLV 219 (357)
Q Consensus 143 ~~~~~g~~~-~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~--~~~~ 219 (357)
..++..... ..+... -.....+++.+.+..|. +-...+.|...+..+........ ....
T Consensus 102 lwd~~~~~~~~~~~~h-----------------~~~v~~v~~sp~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 163 (343)
T 2xzm_R 102 LWDLRTGTTYKRFVGH-----------------QSEVYSVAFSPDNRQIL-SAGAEREIKLWNILGECKFSSAEKENHSD 163 (343)
T ss_dssp EEETTSSCEEEEEECC-----------------CSCEEEEEECSSTTEEE-EEETTSCEEEEESSSCEEEECCTTTSCSS
T ss_pred EEECCCCcEEEEEcCC-----------------CCcEEEEEECCCCCEEE-EEcCCCEEEEEeccCCceeeeecccCCCc
Confidence 999865433 222211 12456788887666555 44455788888887654333221 1223
Q ss_pred CceEEEEeCCC----------CEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEE
Q psy13635 220 EPRAITLSPAH----------GYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIE 289 (357)
Q Consensus 220 ~P~giavd~~~----------g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~ 289 (357)
....++++|.. ..+..+... +.|...+..+.....+ ...-.....+++.+.+ +...+-...+.|.
T Consensus 164 ~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~-~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~ 238 (343)
T 2xzm_R 164 WVSCVRYSPIMKSANKVQPFAPYFASVGWD---GRLKVWNTNFQIRYTF-KAHESNVNHLSISPNG-KYIATGGKDKKLL 238 (343)
T ss_dssp CEEEEEECCCCCSCSCCCSSCCEEEEEETT---SEEEEEETTTEEEEEE-ECCSSCEEEEEECTTS-SEEEEEETTCEEE
T ss_pred eeeeeeeccccccccccCCCCCEEEEEcCC---CEEEEEcCCCceeEEE-cCccccceEEEECCCC-CEEEEEcCCCeEE
Confidence 45677777653 234333333 4777777544332222 2333456889998654 4445555677888
Q ss_pred EEeCC-CCCeEEEecCCCCceEEEEEEC-CEEEEEeCCCCeEEEEeCccCc
Q psy13635 290 MIDFD-GNNRRELINENLPHVFGISLLG-DYVYWTDWQRRSIDRVNKITGN 338 (357)
Q Consensus 290 ~~~~d-G~~~~~i~~~~~~~p~gia~~~-~~ly~td~~~~~I~~~~~~~g~ 338 (357)
..+.. ......... .......+++.. +.+..+ ...+.|...+..+++
T Consensus 239 iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 239 IWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAV-GTDQGVKIFNLMTQS 287 (343)
T ss_dssp EEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEE-EESSCEEEEESSSCC
T ss_pred EEECCCCcccceeec-CCCcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCC
Confidence 88873 332222221 122355666653 332222 223456656654444
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.37 Score=43.79 Aligned_cols=196 Identities=8% Similarity=0.031 Sum_probs=115.0
Q ss_pred ceeEEEEcCCCeEEEEeC-CCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCC
Q psy13635 119 PDGLAIDWLTEKLYWTDS-ETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGT 197 (357)
Q Consensus 119 p~glavd~~~~~ly~td~-~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~ 197 (357)
+..+++.|.++.|.++.. ..+.|...++............ ....++++.|.+..|..+ . .
T Consensus 136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~-----------------~~V~~v~fspdg~~l~s~-s-~ 196 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETR-----------------GEVKDLHFSTDGKVVAYI-T-G 196 (365)
T ss_dssp EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECS-----------------SCCCEEEECTTSSEEEEE-C-S
T ss_pred EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCC-----------------CceEEEEEccCCceEEec-c-c
Confidence 567999988877777554 4678988898765443333211 246788998766555443 3 3
Q ss_pred CeEEEEEcC-CCceEEEec-CCCCCceEEEEeCCCCEEEEEeCCCC-CCeEEEEecCCCceEE----EeeCCCCCceEEE
Q psy13635 198 DRIEVCRLE-GTHRKVLVN-TDLVEPRAITLSPAHGYLFWSDWNEK-RPKIERSLLNGGERVL----LVKDRLGWPNGIT 270 (357)
Q Consensus 198 ~~I~~~~~~-g~~~~~~~~-~~~~~P~giavd~~~g~Ly~~d~~~~-~~~I~~~~~dg~~~~~----~~~~~l~~P~gia 270 (357)
+.+.+.+.. |........ ..-.....+++.|.+..+..+..... ...+...+........ .+........+++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~ 276 (365)
T 4h5i_A 197 SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMD 276 (365)
T ss_dssp SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEE
T ss_pred eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEE
Confidence 456666544 443322222 12234678999987555555443321 1134555544333222 1223344567899
Q ss_pred EecCCCEEEEEeCCCCeEEEEeCCCCC-eEEEecCCCCceEEEEEE-CCEEEEEeCCCCeEEEEeC
Q psy13635 271 LDVDNEKLYWCDAKTDKIEMIDFDGNN-RRELINENLPHVFGISLL-GDYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 271 id~~~~~lY~~d~~~~~I~~~~~dG~~-~~~i~~~~~~~p~gia~~-~~~ly~td~~~~~I~~~~~ 334 (357)
+.+++..| .+-...+.|...+..... ...+.........++++. ++....+-+..++|+..+.
T Consensus 277 ~Spdg~~l-asgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 277 VDMKGELA-VLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKL 341 (365)
T ss_dssp ECTTSCEE-EEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred ECCCCCce-EEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 98655544 444456789888875433 334443345566888887 4677777777788887775
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.45 Score=44.52 Aligned_cols=228 Identities=6% Similarity=-0.033 Sum_probs=127.3
Q ss_pred CcEEEEEEEccCCEEEE---EeCCCCeEEEEEcCCC-----Cc---ceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCC
Q psy13635 71 EEGAAIDYYYKKSMVCW---TDHGTEMISCCTFDGN-----NV---GSKHNVITNGLITPDGLAIDWLTEKLYWTDSETN 139 (357)
Q Consensus 71 ~~~~~i~~d~~~~~ly~---~d~~~~~I~~~~~~g~-----~~---~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~ 139 (357)
..+.++++++.+..|++ +...++.|+..++... .. ..........-..+.++++++..+.++.+-..++
T Consensus 93 ~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg 172 (434)
T 2oit_A 93 FPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADG 172 (434)
T ss_dssp SCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTS
T ss_pred CcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCC
Confidence 35889999998888887 5555677777776532 00 0001111112346788999987678888877889
Q ss_pred EEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCC-C
Q psy13635 140 KLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTD-L 218 (357)
Q Consensus 140 ~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~-~ 218 (357)
.|...++......... .+ .-..+.++++.+.+..|+.+. ..+.|...+.++.....+.... .
T Consensus 173 ~v~iwD~~~~~~~~~~-~~---------------~~~~v~~v~wspdg~~lasgs-~dg~v~iwd~~~~~~~~~~~~~~~ 235 (434)
T 2oit_A 173 SIAVLQVTETVKVCAT-LP---------------STVAVTSVCWSPKGKQLAVGK-QNGTVVQYLPTLQEKKVIPCPPFY 235 (434)
T ss_dssp CEEEEEESSSEEEEEE-EC---------------GGGCEEEEEECTTSSCEEEEE-TTSCEEEECTTCCEEEEECCCTTC
T ss_pred eEEEEEcCCCcceeec-cC---------------CCCceeEEEEcCCCCEEEEEc-CCCcEEEEccCCcccccccCCccc
Confidence 9999998765322111 11 012567888887766666554 5678999998865544442211 1
Q ss_pred C-----CceEEEEeCCCCEEEEEeCCCC----CCeEEEEecCCC--c--eE--EEeeC----CCCCceEEEEe--cCCCE
Q psy13635 219 V-----EPRAITLSPAHGYLFWSDWNEK----RPKIERSLLNGG--E--RV--LLVKD----RLGWPNGITLD--VDNEK 277 (357)
Q Consensus 219 ~-----~P~giavd~~~g~Ly~~d~~~~----~~~I~~~~~dg~--~--~~--~~~~~----~l~~P~giaid--~~~~~ 277 (357)
. ...+++.++....+.....+.. ...+...++... . .. ..... +..++..+.+. +.-+.
T Consensus 236 ~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l 315 (434)
T 2oit_A 236 ESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDL 315 (434)
T ss_dssp CTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTE
T ss_pred CCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCE
Confidence 1 3456777764322222222210 123445554422 1 11 11111 12222233333 45688
Q ss_pred EEEEeCCCCeEEEEeCCCCC--eE-EEec----------C--CCCceEEEEEE
Q psy13635 278 LYWCDAKTDKIEMIDFDGNN--RR-ELIN----------E--NLPHVFGISLL 315 (357)
Q Consensus 278 lY~~d~~~~~I~~~~~dG~~--~~-~i~~----------~--~~~~p~gia~~ 315 (357)
+|++......|..+..++.. -+ .... + .-..|.|+++|
T Consensus 316 ~~v~s~~s~dv~vl~~~~~~~~~~~~~~~d~~ra~lP~~~~~~dt~piG~~~d 368 (434)
T 2oit_A 316 VLAASAASTEVSILARQSDQINWESWLLEDSSRAELPVTDKSDDSLPMGVVVD 368 (434)
T ss_dssp EEEEETTCSBCEEEEECTTSSCEEEEEECGGGCCBCCBCTTSCBCCEEEEEEE
T ss_pred EEEecCCCCceeEEEecCCCCccEEEeccccccccccCCCCCCCceeeEEEEE
Confidence 89999988888887765432 11 1111 1 13468999998
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.57 Score=45.65 Aligned_cols=78 Identities=12% Similarity=0.107 Sum_probs=48.5
Q ss_pred eEEEEecCCCEEEEEeC------------------------------------CCCeEEEEeCC-CCCeEEEecCCCCce
Q psy13635 267 NGITLDVDNEKLYWCDA------------------------------------KTDKIEMIDFD-GNNRRELINENLPHV 309 (357)
Q Consensus 267 ~giaid~~~~~lY~~d~------------------------------------~~~~I~~~~~d-G~~~~~i~~~~~~~p 309 (357)
.++++|+..+.+|+... ..+.+..+|.. |+.+-..-...-...
T Consensus 389 ~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~ 468 (571)
T 2ad6_A 389 GVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWG 468 (571)
T ss_dssp CBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCS
T ss_pred CCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccc
Confidence 35789988999998742 23678888875 433322211111111
Q ss_pred EEEEEECCEEEEEeCCCCeEEEEeCccCceeEEEec
Q psy13635 310 FGISLLGDYVYWTDWQRRSIDRVNKITGNDREVIIE 345 (357)
Q Consensus 310 ~gia~~~~~ly~td~~~~~I~~~~~~~g~~~~~i~~ 345 (357)
..+...++.+|+.. ..+.|+.++..+|+.+..+..
T Consensus 469 ~~~~t~gg~v~~g~-~dg~l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 469 GTLYTKGGLVWYAT-LDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp BCEEETTTEEEEEC-TTSEEEEEETTTCCEEEEEEC
T ss_pred eeEEECCCEEEEEc-CCCeEEEEECCCCCEEEEEeC
Confidence 11344478888864 558899999888988766544
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.43 Score=44.02 Aligned_cols=234 Identities=10% Similarity=0.015 Sum_probs=126.9
Q ss_pred CCeEEEEEe-CCcEEEEEcCC---CC--cceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcC----CCCcceeE
Q psy13635 40 AAQMLLFAT-SKDIRIANLSR---PL--KPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFD----GNNVGSKH 109 (357)
Q Consensus 40 ~~~~l~~~~-~~~i~~~~~~~---~~--~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~----g~~~~~~~ 109 (357)
...+|+.+. +..|+..|+.. .. ...........+.++++.+.++.|. +-..++.|...+++ |.. .
T Consensus 75 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~s~dg~i~vwd~~~~~~~~~----~ 149 (437)
T 3gre_A 75 ETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFA-VSSKDGQIIVLKVNHYQQESE----V 149 (437)
T ss_dssp SSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEE-EEETTSEEEEEEEEEEEETTE----E
T ss_pred CCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEE-EEeCCCEEEEEEeccccCCce----e
Confidence 445555554 45688888754 21 1122324556789999998655555 44455677766662 321 1
Q ss_pred EEEe----------C--CcCCceeEEEEc-CCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCccccc
Q psy13635 110 NVIT----------N--GLITPDGLAIDW-LTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVE 176 (357)
Q Consensus 110 ~~~~----------~--~~~~p~glavd~-~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~ 176 (357)
.... . .-..+..++.-+ ..+.++++-...+.|...++............ ..-.
T Consensus 150 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--------------~h~~ 215 (437)
T 3gre_A 150 KFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENS--------------PRHG 215 (437)
T ss_dssp EEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECC--------------GGGC
T ss_pred eccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccC--------------CCCC
Confidence 1110 0 111223333111 24556666667889999998665443332210 0113
Q ss_pred CCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceE-EEecCCCCCceEEEEeCC---CCEEEEEeCCCCCCeEEEEecCC
Q psy13635 177 HPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRK-VLVNTDLVEPRAITLSPA---HGYLFWSDWNEKRPKIERSLLNG 252 (357)
Q Consensus 177 ~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~-~~~~~~~~~P~giavd~~---~g~Ly~~d~~~~~~~I~~~~~dg 252 (357)
....+++++.+..|. +....+.|...++...... .+..........+++.|. ++.+.++-... +.|...++..
T Consensus 216 ~v~~~~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~d--g~i~iwd~~~ 292 (437)
T 3gre_A 216 AVSSICIDEECCVLI-LGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSK--TFLTIWNFVK 292 (437)
T ss_dssp CEEEEEECTTSCEEE-EEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTT--EEEEEEETTT
T ss_pred ceEEEEECCCCCEEE-EEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCC--CcEEEEEcCC
Confidence 567888887654444 5555678888888754332 222122234567766542 35455554442 5788888765
Q ss_pred CceEEEeeCC--------------------------CCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCC
Q psy13635 253 GERVLLVKDR--------------------------LGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNN 297 (357)
Q Consensus 253 ~~~~~~~~~~--------------------------l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~ 297 (357)
......+... ......++++ ++.++++-...+.|...++....
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~--~~~~l~s~~~d~~i~~wd~~~~~ 361 (437)
T 3gre_A 293 GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS--NDKILLTDEATSSIVMFSLNELS 361 (437)
T ss_dssp TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE--TTEEEEEEGGGTEEEEEETTCGG
T ss_pred CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC--CceEEEecCCCCeEEEEECCCcc
Confidence 4433332211 1113567776 45667777777899999985443
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.48 Score=43.67 Aligned_cols=237 Identities=11% Similarity=0.009 Sum_probs=138.9
Q ss_pred EeecCCCCeEEEEEe-CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEE
Q psy13635 34 ALSHHVAAQMLLFAT-SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI 112 (357)
Q Consensus 34 ~~~~~~~~~~l~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~ 112 (357)
|++-++...+|+.+. ...|+..|+.................+++++ +.+..+...++.+...+..... .....+
T Consensus 152 sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~--~~~~~~ 226 (420)
T 4gga_A 152 SVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAE--HHVATL 226 (420)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSS--CEEEEE
T ss_pred EEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC---CCEEEEEeCCCceeEeeecccc--eeeEEe
Confidence 344445556666555 4568889987644444444445556666665 3455555566777777766543 223344
Q ss_pred eCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceE---EEEecCCCCcceeeeeccCcccccCCceEEEeCCCCe
Q psy13635 113 TNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRK---VLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARN 189 (357)
Q Consensus 113 ~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~---~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~ 189 (357)
........++.+.+.+ ....+-...+.|...+....... .... .........+++.+..+.
T Consensus 227 ~~h~~~~~~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~---------------~~~~~~V~~~~~~p~~~~ 290 (420)
T 4gga_A 227 SGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTF---------------TQHQGAVKAVAWCPWQSN 290 (420)
T ss_dssp ECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCCSSCSCCSEEE---------------CCCSSCEEEEEECTTCTT
T ss_pred cccccceeeeeecCCC-CeeeeeeccccceEEeeccccccceeeeee---------------cccCCceeeeeeCCCccc
Confidence 4455567788888644 44455555677777766432210 0000 011123456777777777
Q ss_pred EEEEeC--CCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCce
Q psy13635 190 LYWTDT--GTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPN 267 (357)
Q Consensus 190 lY~td~--~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~ 267 (357)
++.+-. ..+.|...+........... ....+..+++.+..+.++.+..... +.|...+.........+...-....
T Consensus 291 ~la~~~gs~D~~I~iwd~~t~~~~~~~~-~~~~v~~~~~~~~~~~lv~~sg~~d-~~I~iwd~~~~~~v~~l~gH~~~V~ 368 (420)
T 4gga_A 291 VLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQ-NQLVIWKYPTMAKVAELKGHTSRVL 368 (420)
T ss_dssp EEEEEECTTTCEEEEEETTTTEEEEEEE-CSSCEEEEEEETTTTEEEEEECTTT-CCEEEEETTTCCEEEEECCCSSCEE
T ss_pred EEEEEeecCCCEEEEEeCCccccceeec-cccceeeeeecCCCCeEEEEEecCC-CEEEEEECCCCcEEEEEcCCCCCEE
Confidence 766543 34578888877554433333 2356788899988888877764332 5788888765555444444445678
Q ss_pred EEEEecCCCEEEEEeCCCCeEEEEeCC
Q psy13635 268 GITLDVDNEKLYWCDAKTDKIEMIDFD 294 (357)
Q Consensus 268 giaid~~~~~lY~~d~~~~~I~~~~~d 294 (357)
++++.+++.. .++-...+.|..-++.
T Consensus 369 ~l~~spdg~~-l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 369 SLTMSPDGAT-VASAAADETLRLWRCF 394 (420)
T ss_dssp EEEECTTSSC-EEEEETTTEEEEECCS
T ss_pred EEEEcCCCCE-EEEEecCCeEEEEECC
Confidence 9999865444 4555556677666653
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.43 Score=42.49 Aligned_cols=244 Identities=9% Similarity=0.038 Sum_probs=126.2
Q ss_pred CcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeC--CcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCC
Q psy13635 71 EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN--GLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG 148 (357)
Q Consensus 71 ~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~--~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g 148 (357)
....++++++. +..+-..++.|+..++..... .....+.. .-.....+++.+. +.+..+-...+.|...+...
T Consensus 15 ~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~-~~~~~~~~~~h~~~v~~v~~sp~-~~~las~s~D~~v~iw~~~~ 89 (330)
T 2hes_X 15 EKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDF-TLIDVLDETAHKKAIRSVAWRPH-TSLLAAGSFDSTVSIWAKEE 89 (330)
T ss_dssp SCEEEEEEETT---EEEEEESSSCEEEEECSSSCC-EEEEEECTTCCCSCEEEEEECTT-SSEEEEEETTSCEEEEEC--
T ss_pred CceeeeccCCC---EEEEEcCCCEEEEEEecCCCe-EEEEEEecCCccCCEEEEEECCC-CCEEEEEeCCCcEEEEEccc
Confidence 35677788753 555656667788877765421 11223322 2345778999975 45555666678888887743
Q ss_pred Cc-----eEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcC-C-Cc--eEEEecCCCC
Q psy13635 149 KK-----RKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLE-G-TH--RKVLVNTDLV 219 (357)
Q Consensus 149 ~~-----~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~-g-~~--~~~~~~~~~~ 219 (357)
.. .+.+..- ..--....++++.+.+. .+.+-...+.|...+++ + .. ..........
T Consensus 90 ~~~~~~~~~~~~~~--------------~~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~ 154 (330)
T 2hes_X 90 SADRTFEMDLLAII--------------EGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGEEYECISVLQEHSQ 154 (330)
T ss_dssp -----CCCEEEEEE--------------C----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCCCCEEEEEECCCSS
T ss_pred CcCccccceeEEEE--------------cCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCC
Confidence 21 0111000 01112456788887554 44555556788888874 2 21 1122333345
Q ss_pred CceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCc--eEEEeeCCCCCceEEEEecCC-CEEEEEeCCCCeEEEEeCCCC
Q psy13635 220 EPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGE--RVLLVKDRLGWPNGITLDVDN-EKLYWCDAKTDKIEMIDFDGN 296 (357)
Q Consensus 220 ~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~--~~~~~~~~l~~P~giaid~~~-~~lY~~d~~~~~I~~~~~dG~ 296 (357)
....++++|....|.-+... +.|...+..... ....+...-.....+++++.+ +....+-...+.|...++.+.
T Consensus 155 ~v~~v~~~p~~~~l~s~s~D---~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 155 DVKHVIWHPSEALLASSSYD---DTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp CEEEEEECSSSSEEEEEETT---SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred ceEEEEECCCCCEEEEEcCC---CeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence 67899999875555555444 355444443321 222232333456788887653 334444445566666655321
Q ss_pred --------CeEEEecC-CCCceEEEEEECCEEEEEeCCCCeEEEEeCccC
Q psy13635 297 --------NRRELINE-NLPHVFGISLLGDYVYWTDWQRRSIDRVNKITG 337 (357)
Q Consensus 297 --------~~~~i~~~-~~~~p~gia~~~~~ly~td~~~~~I~~~~~~~g 337 (357)
.....+.. .......+++..+.++.+-...+.|...+..++
T Consensus 232 ~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 232 DEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp CTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETT
T ss_pred CccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCC
Confidence 01111111 223446666654444455555667766665444
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.49 Score=42.39 Aligned_cols=241 Identities=10% Similarity=0.000 Sum_probs=126.8
Q ss_pred EeecCCCCeEEEEEe-CCcEEEEEcCCCCc--ceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEE
Q psy13635 34 ALSHHVAAQMLLFAT-SKDIRIANLSRPLK--PVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHN 110 (357)
Q Consensus 34 ~~~~~~~~~~l~~~~-~~~i~~~~~~~~~~--~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~ 110 (357)
+++-++...+|+.+. ...++..++..... ............++++.+.+..| .+-..++.|+..+++.........
T Consensus 66 ~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~ 144 (345)
T 3fm0_A 66 KVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLL-ATCSRDKSVWVWEVDEEDEYECVS 144 (345)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEE-EEEETTSCEEEEEECTTSCEEEEE
T ss_pred EEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEE-EEEECCCeEEEEECCCCCCeEEEE
Confidence 344444555666555 45677777755221 12223345568899999865544 455556778888876543111123
Q ss_pred EEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEE-EecCCCCcceeeeeccCcccccCCceEEEeCCCCe
Q psy13635 111 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVL-YWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARN 189 (357)
Q Consensus 111 ~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~-~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~ 189 (357)
.+.........+++.+.+. ++.+-...+.|...+......... ...+ --....++++++.+..
T Consensus 145 ~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~~w~~~~~~~~~~~~~~~---------------h~~~v~~l~~sp~g~~ 208 (345)
T 3fm0_A 145 VLNSHTQDVKHVVWHPSQE-LLASASYDDTVKLYREEEDDWVCCATLEG---------------HESTVWSLAFDPSGQR 208 (345)
T ss_dssp EECCCCSCEEEEEECSSSS-CEEEEETTSCEEEEEEETTEEEEEEEECC---------------CSSCEEEEEECTTSSE
T ss_pred EecCcCCCeEEEEECCCCC-EEEEEeCCCcEEEEEecCCCEEEEEEecC---------------CCCceEEEEECCCCCE
Confidence 3333445577889987555 444555567788777654432211 1111 1124678889876555
Q ss_pred EEEEeCCCCeEEEEEc--CCCce--------------EEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCC
Q psy13635 190 LYWTDTGTDRIEVCRL--EGTHR--------------KVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGG 253 (357)
Q Consensus 190 lY~td~~~~~I~~~~~--~g~~~--------------~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~ 253 (357)
|. +....+.|..-+. .+... ..+..........+++++..+.|..+... +.|...+.+..
T Consensus 209 l~-s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---~~i~vw~~~~~ 284 (345)
T 3fm0_A 209 LA-SCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGD---DAIRVFQEDPN 284 (345)
T ss_dssp EE-EEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETT---SCEEEEEECTT
T ss_pred EE-EEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCC---CeEEEEEeCCC
Confidence 54 4444555555442 22110 01111122346788888876666555544 34555544332
Q ss_pred c-----eEEE----eeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCC
Q psy13635 254 E-----RVLL----VKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDG 295 (357)
Q Consensus 254 ~-----~~~~----~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG 295 (357)
. ...+ ........+++++.+.+..++.+-...+.|..-+...
T Consensus 285 ~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~ 335 (345)
T 3fm0_A 285 SDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQR 335 (345)
T ss_dssp SCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC
T ss_pred CCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecC
Confidence 1 0111 1112334578888765555666655566666665543
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.5 Score=41.05 Aligned_cols=269 Identities=7% Similarity=0.012 Sum_probs=149.7
Q ss_pred eEEEEEeCCcEEEEEcCCCCcceEec--cCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCc
Q psy13635 42 QMLLFATSKDIRIANLSRPLKPVTII--KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITP 119 (357)
Q Consensus 42 ~~l~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p 119 (357)
..|..+.++.|+..|+..+....... .......++++.+.++.| .+...++.|...++.... ........-...
T Consensus 37 ~~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l-~sgs~Dg~v~iw~~~~~~---~~~~~~~h~~~~ 112 (318)
T 4ggc_A 37 NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYL-AVGTSSAEVQLWDVQQQK---RLRNMTSHSARV 112 (318)
T ss_dssp SEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEE-EEEETTSEEEEEETTTTE---EEEEEECCSSCE
T ss_pred CEEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEE-EEEECCCcEEEeecCCce---eEEEecCccceE
Confidence 36666677889999987643333222 233457899999866554 455567788888887663 222333222233
Q ss_pred eeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCe
Q psy13635 120 DGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDR 199 (357)
Q Consensus 120 ~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~ 199 (357)
. ++.+.+. +..+....+.+................+ .......+++.+.+ ...++....+.
T Consensus 113 ~--~~~~~~~-~l~s~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~-~~l~s~~~d~~ 173 (318)
T 4ggc_A 113 G--SLSWNSY-ILSSGSRSGHIHHHDVRVAEHHVATLSG---------------HSQEVCGLRWAPDG-RHLASGGNDNL 173 (318)
T ss_dssp E--EEEEETT-EEEEEETTSEEEEEETTSSSCEEEEEEC---------------CSSCEEEEEECTTS-SEEEEEETTSC
T ss_pred E--EeecCCC-EEEEEecCCceEeeecCCCceeEEEEcC---------------ccCceEEEEEcCCC-CEEEEEecCcc
Confidence 3 3333233 4445555666666665544333222111 11234455666444 44445555677
Q ss_pred EEEEEcCCCc-e---EEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCC
Q psy13635 200 IEVCRLEGTH-R---KVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDN 275 (357)
Q Consensus 200 I~~~~~~g~~-~---~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~ 275 (357)
|...+..... . .............++..+..+.+.....+...+.|...+........... .......+.+.+..
T Consensus 174 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~ 252 (318)
T 4ggc_A 174 VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHY 252 (318)
T ss_dssp EEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTT
T ss_pred eeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccc
Confidence 8877765321 1 11122223345677887776666554443323567666666554444332 33456777888778
Q ss_pred CEEEEEe-CCCCeEEEEeCCCCCeEEEecCCCCceEEEEEE-CCEEEEEeCCCCeEEEEeC
Q psy13635 276 EKLYWCD-AKTDKIEMIDFDGNNRRELINENLPHVFGISLL-GDYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 276 ~~lY~~d-~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~-~~~ly~td~~~~~I~~~~~ 334 (357)
+.++.+. ...+.|...+.........+.........+++. ++.+.+|-...+.|..-+.
T Consensus 253 ~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 253 KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp TEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred cceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 8877665 356788888876544433444444556778876 3555555555566654443
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.27 E-value=1.1 Score=45.06 Aligned_cols=198 Identities=10% Similarity=0.055 Sum_probs=111.3
Q ss_pred cEEEEEEE-ccCCEEEEEeCCCC----eEEEEEcCCC-CcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCC----CEE
Q psy13635 72 EGAAIDYY-YKKSMVCWTDHGTE----MISCCTFDGN-NVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSET----NKL 141 (357)
Q Consensus 72 ~~~~i~~d-~~~~~ly~~d~~~~----~I~~~~~~g~-~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~----~~I 141 (357)
...+..++ +++..|.|+....+ .|+..++++. ... ...+.. ...+++..+.++.||++.... .+|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l--~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v 249 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI--ADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKV 249 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC--CCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC--CccccC---ceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence 45677889 88887876644332 4999999876 411 001111 124677777777888875431 378
Q ss_pred EEEEcCCCce--EEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC--CCeEEEEEcCCC--ce--EEE
Q psy13635 142 EVSSLDGKKR--KVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG--TDRIEVCRLEGT--HR--KVL 213 (357)
Q Consensus 142 ~~~~~~g~~~--~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~--~~~I~~~~~~g~--~~--~~~ 213 (357)
++.++++... ..+.... . .. .-.++++.+.++.|+++... ...|+.+++++. .. +.+
T Consensus 250 ~~~~lgt~~~~~~lv~~~~-~------------~~--~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l 314 (751)
T 2xe4_A 250 WRHVMGKLQSEDVCLYEEH-N------------PL--FSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIV 314 (751)
T ss_dssp EEEETTSCGGGCEEEEECC-C------------TT--CEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEES
T ss_pred EEEECCCCchhcEEEEecC-C------------Cc--eEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEe
Confidence 8888876532 2332211 0 00 12345677777788776533 347888888764 22 333
Q ss_pred ecCCCCCc-eEEEEeCCCCEEEEEeCCC--CCCeEEEEecCC-CceEE-EeeCCCC-CceEEEEecCCCEEEEEeCC--C
Q psy13635 214 VNTDLVEP-RAITLSPAHGYLFWSDWNE--KRPKIERSLLNG-GERVL-LVKDRLG-WPNGITLDVDNEKLYWCDAK--T 285 (357)
Q Consensus 214 ~~~~~~~P-~giavd~~~g~Ly~~d~~~--~~~~I~~~~~dg-~~~~~-~~~~~l~-~P~giaid~~~~~lY~~d~~--~ 285 (357)
.... ..+ ..+.. ..++.||+..... .+.+|++++.++ ...+. ++..... ...++++ .++.|+++... .
T Consensus 315 ~~~~-~~~~~s~~~-~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~~~g~ 390 (751)
T 2xe4_A 315 RPRE-KGVRYDVQM-HGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGRRAGL 390 (751)
T ss_dssp SCCC-TTCCEEEEE-ETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEEETTE
T ss_pred ecCC-CCceEEEee-eeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEEeCCE
Confidence 3222 222 23322 2367777765432 247999999885 33233 4433211 2245555 57888877643 3
Q ss_pred CeEEEEeC
Q psy13635 286 DKIEMIDF 293 (357)
Q Consensus 286 ~~I~~~~~ 293 (357)
.+++.+++
T Consensus 391 ~~l~~~dl 398 (751)
T 2xe4_A 391 TRIWTMMA 398 (751)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEec
Confidence 46788885
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=96.12 E-value=0.62 Score=40.64 Aligned_cols=245 Identities=8% Similarity=0.026 Sum_probs=131.8
Q ss_pred CCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcC-CCeEEEEeCCCCEEEEEEcCC
Q psy13635 70 LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL-TEKLYWTDSETNKLEVSSLDG 148 (357)
Q Consensus 70 ~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~-~~~ly~td~~~~~I~~~~~~g 148 (357)
......++|++.+..| .+-..++.|+..++++... .....+...-....++++.+. .+.++.+-+..+.|...++..
T Consensus 9 ~~~V~~~~~s~~g~~l-as~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~ 86 (297)
T 2pm7_B 9 NEMIHDAVMDYYGKRM-ATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN 86 (297)
T ss_dssp SSCEEEEEECTTSSEE-EEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS
T ss_pred cCceEEEEECCCCCEE-EEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC
Confidence 3456788898865554 4555667788878765321 112233333345667787543 366777777789999988865
Q ss_pred Cce-EEEEecCCCCcceeeeeccCcccccCCceEEEeCCC-CeEEEEeCCCCeEEEEEcCCCc--eEEEecCCCCCceEE
Q psy13635 149 KKR-KVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVA-RNLYWTDTGTDRIEVCRLEGTH--RKVLVNTDLVEPRAI 224 (357)
Q Consensus 149 ~~~-~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~-~~lY~td~~~~~I~~~~~~g~~--~~~~~~~~~~~P~gi 224 (357)
... ......+ .-.....+++.+.. +.++.+-...+.|...++.... ..............+
T Consensus 87 ~~~~~~~~~~~---------------h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~ 151 (297)
T 2pm7_B 87 GRWSQIAVHAV---------------HSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSA 151 (297)
T ss_dssp SCBCCCEEECC---------------CSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEE
T ss_pred CceEEEEEeec---------------CCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceE
Confidence 421 1111110 01235667777642 4555566666788888876432 122222333456778
Q ss_pred EEeCCC------------CEEEEEeCCCCCCeEEEEecCCCc----eEEEeeCCCCCceEEEEecCC--CEEEEEeCCCC
Q psy13635 225 TLSPAH------------GYLFWSDWNEKRPKIERSLLNGGE----RVLLVKDRLGWPNGITLDVDN--EKLYWCDAKTD 286 (357)
Q Consensus 225 avd~~~------------g~Ly~~d~~~~~~~I~~~~~dg~~----~~~~~~~~l~~P~giaid~~~--~~lY~~d~~~~ 286 (357)
+++|.. +.++.+-... +.|...+++... ....+...-....++++.+.. +.++.+-...+
T Consensus 152 ~~~p~~~~~~~~~~~~~~~~~l~sgs~D--~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~ 229 (297)
T 2pm7_B 152 SWAPATIEEDGEHNGTKESRKFVTGGAD--NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDR 229 (297)
T ss_dssp EECCCC------------CCEEEEEETT--SCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred eecCCcccccccCCCCCCcceEEEEcCC--CcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCC
Confidence 888752 3344443332 355555554332 111222333456889998653 46666666677
Q ss_pred eEEEEeCCCCC---eEEEec-CC-CCceEEEEEE-CCEEEEEeCCCCeEEEEe
Q psy13635 287 KIEMIDFDGNN---RRELIN-EN-LPHVFGISLL-GDYVYWTDWQRRSIDRVN 333 (357)
Q Consensus 287 ~I~~~~~dG~~---~~~i~~-~~-~~~p~gia~~-~~~ly~td~~~~~I~~~~ 333 (357)
.|...+.+... ...++. .. -.....+++. .+.+..+-...+.|...+
T Consensus 230 ~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 230 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (297)
T ss_dssp CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred cEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 78777765432 223331 11 2234566765 344445444556655443
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=96.07 E-value=0.65 Score=40.50 Aligned_cols=235 Identities=8% Similarity=-0.006 Sum_probs=126.6
Q ss_pred CCCCeEEEEEe-CCcEEEEEcCCC--CcceEeccCCCcEEEEEEEcc-CCEEEEEeCCCCeEEEEEcCCCCcceeEEEEe
Q psy13635 38 HVAAQMLLFAT-SKDIRIANLSRP--LKPVTIIKDLEEGAAIDYYYK-KSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT 113 (357)
Q Consensus 38 ~~~~~~l~~~~-~~~i~~~~~~~~--~~~~~~~~~~~~~~~i~~d~~-~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~ 113 (357)
++...+|+-+. ...|+..++.+. .....+...-....+++|.+. .+.+..+-..++.|+..++..... .......
T Consensus 18 s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~-~~~~~~~ 96 (297)
T 2pm7_B 18 DYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRW-SQIAVHA 96 (297)
T ss_dssp CTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCB-CCCEEEC
T ss_pred CCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCce-EEEEEee
Confidence 33444555444 556888888652 222333344556788999753 356666766778888888875421 0122222
Q ss_pred CCcCCceeEEEEcCC-CeEEEEeCCCCEEEEEEcCCCc-e-EEEEecCCCCcceeeeeccCcccccCCceEEEeCC----
Q psy13635 114 NGLITPDGLAIDWLT-EKLYWTDSETNKLEVSSLDGKK-R-KVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWV---- 186 (357)
Q Consensus 114 ~~~~~p~glavd~~~-~~ly~td~~~~~I~~~~~~g~~-~-~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~---- 186 (357)
..-.....+++.+.. +.++.+-...+.|...++.... . ....... ......+++.+.
T Consensus 97 ~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h----------------~~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 97 VHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAH----------------AIGVNSASWAPATIEE 160 (297)
T ss_dssp CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECC----------------SSCEEEEEECCCC---
T ss_pred cCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecc----------------cCccceEeecCCcccc
Confidence 233456788888652 5566666678889988876432 1 1111111 012334444443
Q ss_pred --------CCeEEEEeCCCCeEEEEEcCCCc----eEEEecCCCCCceEEEEeCCC--CEEEEEeCCCCCCeEEEEecCC
Q psy13635 187 --------ARNLYWTDTGTDRIEVCRLEGTH----RKVLVNTDLVEPRAITLSPAH--GYLFWSDWNEKRPKIERSLLNG 252 (357)
Q Consensus 187 --------~~~lY~td~~~~~I~~~~~~g~~----~~~~~~~~~~~P~giavd~~~--g~Ly~~d~~~~~~~I~~~~~dg 252 (357)
.++++++-...+.|...+.+... .............+++++|.. +.+..+-... +.|...+++.
T Consensus 161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D--~~v~iWd~~~ 238 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD--RTCIIWTQDN 238 (297)
T ss_dssp ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT--SCEEEEEESS
T ss_pred cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECC--CcEEEEEeCC
Confidence 24566666666777777765432 112222334567899999864 4555554442 4566556554
Q ss_pred Cc---eEEEee-CC-CCCceEEEEecCCCEEEEEeCCCCeEEEEe
Q psy13635 253 GE---RVLLVK-DR-LGWPNGITLDVDNEKLYWCDAKTDKIEMID 292 (357)
Q Consensus 253 ~~---~~~~~~-~~-l~~P~giaid~~~~~lY~~d~~~~~I~~~~ 292 (357)
.. ...++. .. -.....+++.+.+..|..+. ..+.|...+
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~-~D~~v~lw~ 282 (297)
T 2pm7_B 239 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG-GDNKVTLWK 282 (297)
T ss_dssp TTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE-TTSCEEEEE
T ss_pred CCCccceeeeecccCCCcEEEEEECCCCCEEEEEc-CCCcEEEEE
Confidence 22 222321 11 23346788886555554443 344444443
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.95 Score=41.50 Aligned_cols=299 Identities=16% Similarity=0.012 Sum_probs=152.3
Q ss_pred eEEEEEeCCcEEEEEcCC-CCcceEe--ccCCCcEEEEEEEc-cCCEEEEEeCCC---CeEEEEEcCCCCcceeEEEEeC
Q psy13635 42 QMLLFATSKDIRIANLSR-PLKPVTI--IKDLEEGAAIDYYY-KKSMVCWTDHGT---EMISCCTFDGNNVGSKHNVITN 114 (357)
Q Consensus 42 ~~l~~~~~~~i~~~~~~~-~~~~~~~--~~~~~~~~~i~~d~-~~~~ly~~d~~~---~~I~~~~~~g~~~~~~~~~~~~ 114 (357)
..|++.....+.+.+-+. ....+.. ........+|.+|+ ..+.||..-... ..|++..-.|.. .+.+..
T Consensus 23 g~l~vgt~~Gl~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~t----W~~~~~ 98 (394)
T 3b7f_A 23 VMLLVATIKGAWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGN----WTEATR 98 (394)
T ss_dssp CEEEEEETTEEEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSC----CEECSB
T ss_pred CEEEEEecCceEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCC----ceECCc
Confidence 356666666676665432 2334432 12334688999998 356777664321 167775444432 332221
Q ss_pred C--c------------CCceeEEEEcC--CCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccC---cccc
Q psy13635 115 G--L------------ITPDGLAIDWL--TEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLP---TIEV 175 (357)
Q Consensus 115 ~--~------------~~p~glavd~~--~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~---~~~~ 175 (357)
. + ....+|++|+. .+.||.... .+.|.+.+-.|..=+.+... ...|.......-+ ....
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~-~ggl~~S~DgG~tW~~~~~~-~~~p~~~~~~~~~~~g~~~~ 176 (394)
T 3b7f_A 99 PPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS-PQGLFRSTDHGASWEPVAGF-NDHPMRRAWTGGEQDGTPDG 176 (394)
T ss_dssp CCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEE-TTEEEEESSTTSBCEECHHH-HTCTTHHHHHCCC----CCC
T ss_pred cccCCCcccccccccccceeEEEeCCCCCCCEEEEEec-CCcEEEEcCCCCCeEECcCc-cCCccccccccccccCCCCC
Confidence 1 1 12346888864 577877542 45677765555433332110 0001000000000 0000
Q ss_pred cCCceEEEeCC-CCeEEEEeCCCCeEEEEEcCCCceEEEecCC----C--------CCceEEEEeCCC-CEEEEEeCCCC
Q psy13635 176 EHPDGVAVDWV-ARNLYWTDTGTDRIEVCRLEGTHRKVLVNTD----L--------VEPRAITLSPAH-GYLFWSDWNEK 241 (357)
Q Consensus 176 ~~p~glavD~~-~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~----~--------~~P~giavd~~~-g~Ly~~d~~~~ 241 (357)
.....|++|+. .+.||+.... +.|++.+-.|..-+.+.... + .....|++++.+ +.||+...
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~-ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~--- 252 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSS-GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH--- 252 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEET-BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET---
T ss_pred CceeEEEECCCCCCEEEEEECC-CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC---
Confidence 12247888875 4678887543 35777765555433332110 0 235789999853 78888753
Q ss_pred CCeEEEEecCCCceEEEeeCCCC-----CceEEEEec-CCCEEEEEeC------------CCCeEEEEeCCCCCeEEEec
Q psy13635 242 RPKIERSLLNGGERVLLVKDRLG-----WPNGITLDV-DNEKLYWCDA------------KTDKIEMIDFDGNNRRELIN 303 (357)
Q Consensus 242 ~~~I~~~~~dg~~~~~~~~~~l~-----~P~giaid~-~~~~lY~~d~------------~~~~I~~~~~dG~~~~~i~~ 303 (357)
..|++..-.|..-+.+ ...+. ....|++|+ ..+.||+.-. ....|++..-.|..-+.+.
T Consensus 253 -~gl~~s~D~G~tW~~~-~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~- 329 (394)
T 3b7f_A 253 -CGIYRMDRREGVWKRI-GDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD- 329 (394)
T ss_dssp -TEEEEEETTTTEEECG-GGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC-
T ss_pred -CeEEEeCCCCCcceEC-CCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC-
Confidence 3688776545433322 22222 234677775 3567887631 1235665543344333332
Q ss_pred CCCCce--------EEEEEE---CCEEEEEeCCCCeEEEEeCccCceeEEEecccCCceeeee
Q psy13635 304 ENLPHV--------FGISLL---GDYVYWTDWQRRSIDRVNKITGNDREVIIERSCTGVTRRR 355 (357)
Q Consensus 304 ~~~~~p--------~gia~~---~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~i~~ 355 (357)
..+..+ .+++++ .+.||+.. ..+.|++-.- .|+.-+.+..++.....+.+
T Consensus 330 ~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~-~~g~l~~S~D-~G~tW~~~~~~lp~~~~v~~ 390 (394)
T 3b7f_A 330 RGLPTDQAWLTVKRQAMTADAHAPVGVYFGT-TGGEIWASAD-EGEHWQCIASHLPHIYAVQS 390 (394)
T ss_dssp BTSCCSSCCCCCCTBSEEECCSSSCCEEEEC-TTSCEEEESS-TTSBCEEEECSCSCEEEEEE
T ss_pred CCCCCccccceEEEEEEEECCCCCCEEEEEe-CCCeEEEECC-CCCCceEcccCCCCeeEEEE
Confidence 223221 346665 25688753 3456765543 68888888888776655544
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.95 Score=40.27 Aligned_cols=159 Identities=6% Similarity=0.003 Sum_probs=94.6
Q ss_pred CCceeEEEEc-CCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeC
Q psy13635 117 ITPDGLAIDW-LTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDT 195 (357)
Q Consensus 117 ~~p~glavd~-~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~ 195 (357)
.....+++++ ..+.++++-...+.|...++.......+.... .-.....+++.+ .+.++.+..
T Consensus 126 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~---------------~~~~i~~~~~~p-dg~~lasg~ 189 (343)
T 3lrv_A 126 NEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAK---------------SDVEYSSGVLHK-DSLLLALYS 189 (343)
T ss_dssp SCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCC---------------SSCCCCEEEECT-TSCEEEEEC
T ss_pred CCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecC---------------CCCceEEEEECC-CCCEEEEEc
Confidence 3467788886 14555666667889999998766553332111 112467888886 456666666
Q ss_pred CCCeEEEEEcCCCceE-EEecC-CCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeC--CCCCc---eE
Q psy13635 196 GTDRIEVCRLEGTHRK-VLVNT-DLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKD--RLGWP---NG 268 (357)
Q Consensus 196 ~~~~I~~~~~~g~~~~-~~~~~-~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~--~l~~P---~g 268 (357)
..+.|...+....... ..... .......++++|.+..|..+. . ..|...++........+.. .-..+ ..
T Consensus 190 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (343)
T 3lrv_A 190 PDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-D---QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVT 265 (343)
T ss_dssp TTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-S---SBEEEEETTSSTTCBSSCCCBC-----CCEE
T ss_pred CCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-C---CeEEEEEcCCCCcceeecccccccccccceE
Confidence 7788999998755433 23332 345678999998766666665 3 2677777664432111110 00011 35
Q ss_pred EEEecCCCEEEEEeCCCCeEEEEeCCC
Q psy13635 269 ITLDVDNEKLYWCDAKTDKIEMIDFDG 295 (357)
Q Consensus 269 iaid~~~~~lY~~d~~~~~I~~~~~dG 295 (357)
+++++.+..|..+..+.+.|...+.+.
T Consensus 266 ~~~~~~g~~l~~~s~~d~~i~v~~~~~ 292 (343)
T 3lrv_A 266 YDIDDSGKNMIAYSNESNSLTIYKFDK 292 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEECCCCCEEEEecCCCCcEEEEEEcc
Confidence 999977666666555466777776643
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.15 Score=49.87 Aligned_cols=111 Identities=16% Similarity=0.168 Sum_probs=75.5
Q ss_pred cccccCCceEEEeCCCCeEEEEeCCC---------------------CeEEEEEcCCCce-------EEEe-c-------
Q psy13635 172 TIEVEHPDGVAVDWVARNLYWTDTGT---------------------DRIEVCRLEGTHR-------KVLV-N------- 215 (357)
Q Consensus 172 ~~~~~~p~glavD~~~~~lY~td~~~---------------------~~I~~~~~~g~~~-------~~~~-~------- 215 (357)
...+..|+|+++++.++.+|++..+. +.|++..+++... ..++ .
T Consensus 380 AT~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~ 459 (592)
T 3zwu_A 380 ATRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHA 459 (592)
T ss_dssp CCCEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTST
T ss_pred eEEEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCccccc
Confidence 45788999999999999999996642 4688887654321 1111 0
Q ss_pred -------------CCCCCceEEEEeCCCCEEEEEeCCCC----------CCeEEEEecCCCceEEEee-CCCCCceEEEE
Q psy13635 216 -------------TDLVEPRAITLSPAHGYLFWSDWNEK----------RPKIERSLLNGGERVLLVK-DRLGWPNGITL 271 (357)
Q Consensus 216 -------------~~~~~P~giavd~~~g~Ly~~d~~~~----------~~~I~~~~~dg~~~~~~~~-~~l~~P~giai 271 (357)
..+..|-.|++|+. |+||+++-+.. +..++..+........++. ..-....|+++
T Consensus 460 ~~~~~~~~~~~~~~~f~~PDNL~fd~~-G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~f 538 (592)
T 3zwu_A 460 GTPKGGSSNITPQNMFNSPDGLGFDKA-GRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISF 538 (592)
T ss_dssp TSGGGCCTTCCTTTCCCCEEEEEECTT-CCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEE
T ss_pred ccccccccccCCCCCccCCcceEECCC-CCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeE
Confidence 12678999999985 78888865421 2466777766444444433 23456789999
Q ss_pred ecCCCEEEEEeC
Q psy13635 272 DVDNEKLYWCDA 283 (357)
Q Consensus 272 d~~~~~lY~~d~ 283 (357)
.++...||+.-+
T Consensus 539 spDg~tlfvniQ 550 (592)
T 3zwu_A 539 SPDQKTLFVGIQ 550 (592)
T ss_dssp CTTSSEEEEEEE
T ss_pred CCCCCEEEEEEE
Confidence 988888888754
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=95.73 E-value=0.98 Score=39.78 Aligned_cols=236 Identities=6% Similarity=-0.056 Sum_probs=119.4
Q ss_pred CCeEEEEEe-CCcEEEEEcCCCCc--ceEeccCCCcEEEEEEEcc-CCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCC
Q psy13635 40 AAQMLLFAT-SKDIRIANLSRPLK--PVTIIKDLEEGAAIDYYYK-KSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNG 115 (357)
Q Consensus 40 ~~~~l~~~~-~~~i~~~~~~~~~~--~~~~~~~~~~~~~i~~d~~-~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 115 (357)
...+|+-+. ...|+..|+..+.. ............++++.+. ++.+..+-..++.|...++..... .....+...
T Consensus 24 ~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~-~~~~~~~~h 102 (316)
T 3bg1_A 24 YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTW-EKSHEHAGH 102 (316)
T ss_dssp GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCC-CEEEEECCC
T ss_pred CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcc-eEEEEccCC
Confidence 334444444 45688888765321 1122334556788999653 355666666677888877765421 112223333
Q ss_pred cCCceeEEEEcCC-CeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCC--------
Q psy13635 116 LITPDGLAIDWLT-EKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWV-------- 186 (357)
Q Consensus 116 ~~~p~glavd~~~-~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~-------- 186 (357)
-.....+++.+.. +.++.+-...+.|...++.+............. ......+++.+.
T Consensus 103 ~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h-------------~~~v~~~~~~~~~~~~~~~~ 169 (316)
T 3bg1_A 103 DSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAH-------------TIGCNAVSWAPAVVPGSLID 169 (316)
T ss_dssp SSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSS-------------SSCBCCCEECCCCCC-----
T ss_pred CCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccc-------------cCCcceEEEccccCCccccc
Confidence 3467889998753 566777777888888887654221110000000 011222333322
Q ss_pred --------CCeEEEEeCCCCeEEEEEcCCCc---eEEEecCCCCCceEEEEeCCC---CEEEEEeCCCCCCeEEEEecCC
Q psy13635 187 --------ARNLYWTDTGTDRIEVCRLEGTH---RKVLVNTDLVEPRAITLSPAH---GYLFWSDWNEKRPKIERSLLNG 252 (357)
Q Consensus 187 --------~~~lY~td~~~~~I~~~~~~g~~---~~~~~~~~~~~P~giavd~~~---g~Ly~~d~~~~~~~I~~~~~dg 252 (357)
.+.++.+-...+.|..-+..... .............+++++|.. +.+..+-... +.|...+++.
T Consensus 170 ~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D--~~v~iw~~~~ 247 (316)
T 3bg1_A 170 HPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQD--GRVFIWTCDD 247 (316)
T ss_dssp -CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETT--CEEEEEECSS
T ss_pred cccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCC--CeEEEEEccC
Confidence 13455555555666666665331 111122233456889998864 1333443332 4676666654
Q ss_pred Cc----eEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEe
Q psy13635 253 GE----RVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMID 292 (357)
Q Consensus 253 ~~----~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~ 292 (357)
.. ....+...-.....+++.+.+..|..+ ...+.|...+
T Consensus 248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~-~~D~~v~lw~ 290 (316)
T 3bg1_A 248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVS-GGDNKVTLWK 290 (316)
T ss_dssp TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEE-ESSSCEEEEE
T ss_pred ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEE-cCCCeEEEEE
Confidence 11 111222222345788887655444433 3344554444
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.19 Score=49.13 Aligned_cols=124 Identities=16% Similarity=0.201 Sum_probs=76.1
Q ss_pred CcCCceeEEEEcCCCeEEEEeCC---------------------CCEEEEEEcCCCce-------EEEEecCCC---Ccc
Q psy13635 115 GLITPDGLAIDWLTEKLYWTDSE---------------------TNKLEVSSLDGKKR-------KVLYWEDID---QPR 163 (357)
Q Consensus 115 ~~~~p~glavd~~~~~ly~td~~---------------------~~~I~~~~~~g~~~-------~~~~~~~~~---~p~ 163 (357)
.+..|+++++++.++.+|++-.+ .++|.++..++... +.++..+.. ...
T Consensus 382 ~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~ 461 (592)
T 3zwu_A 382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT 461 (592)
T ss_dssp CEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred EEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCccccccc
Confidence 46789999999999999998653 26788887654321 122211100 000
Q ss_pred eeeee-c-cCcccccCCceEEEeCCCCeEEEEeCC------------CCeEEEEEcC-CCceEEEecCCCCCceEEEEeC
Q psy13635 164 AIASY-K-LPTIEVEHPDGVAVDWVARNLYWTDTG------------TDRIEVCRLE-GTHRKVLVNTDLVEPRAITLSP 228 (357)
Q Consensus 164 ~i~~~-~-~~~~~~~~p~glavD~~~~~lY~td~~------------~~~I~~~~~~-g~~~~~~~~~~~~~P~giavd~ 228 (357)
..... . .....|..|.+|+||+. |+||+++-+ ++.+...++. |+..+.+....-....|++++|
T Consensus 462 ~~~~~~~~~~~~~f~~PDNL~fd~~-G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fsp 540 (592)
T 3zwu_A 462 PKGGSSNITPQNMFNSPDGLGFDKA-GRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP 540 (592)
T ss_dssp GGGCCTTCCTTTCCCCEEEEEECTT-CCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT
T ss_pred ccccccccCCCCCccCCcceEECCC-CCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECC
Confidence 00000 0 01345789999999975 567776543 2456677666 4444444333345788999999
Q ss_pred CCCEEEEEeCC
Q psy13635 229 AHGYLFWSDWN 239 (357)
Q Consensus 229 ~~g~Ly~~d~~ 239 (357)
....||+.-..
T Consensus 541 Dg~tlfvniQH 551 (592)
T 3zwu_A 541 DQKTLFVGIQH 551 (592)
T ss_dssp TSSEEEEEEES
T ss_pred CCCEEEEEEEC
Confidence 88899988665
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=95.32 E-value=1.5 Score=39.33 Aligned_cols=225 Identities=11% Similarity=0.080 Sum_probs=124.4
Q ss_pred EeecCCCCeEEEEEeCCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEe
Q psy13635 34 ALSHHVAAQMLLFATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT 113 (357)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~ 113 (357)
|++-++...++..+..+.++..+++.. ... ..........+++.+..+.+..+...++.|...+..... ....+.
T Consensus 24 ~v~fs~dg~~la~g~~~~~~iw~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~---~~~~~~ 98 (355)
T 3vu4_A 24 DYEFNQDQSCLILSTLKSFEIYNVHPV-AHI-MSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQ---DVSRIK 98 (355)
T ss_dssp EEEECTTSSEEEEECSSEEEEEEETTE-EEE-EEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTE---EEEEEE
T ss_pred EEEECCCCCEEEEEcCCEEEEEecCCc-cee-eeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCc---EEEEEE
Confidence 334455566777777777888887542 111 112222345567777777787777777788888877653 122222
Q ss_pred CCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCC-c-eEEEEecCCCCcceeeeeccCcccccCCce-EEEeCCCCeE
Q psy13635 114 NGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGK-K-RKVLYWEDIDQPRAIASYKLPTIEVEHPDG-VAVDWVARNL 190 (357)
Q Consensus 114 ~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~-~-~~~~~~~~~~~p~~i~~~~~~~~~~~~p~g-lavD~~~~~l 190 (357)
.-....+++++ .+.++++. .++|...++... . ...+. .|.+ +++.+ +.+
T Consensus 99 -~~~~v~~v~~~--~~~~~~~~--~~~i~i~d~~~~~~~~~~~~---------------------~~~~~~~~s~--~~l 150 (355)
T 3vu4_A 99 -VDAPVKDLFLS--REFIVVSY--GDVISVFKFGNPWKRITDDI---------------------RFGGVCEFSN--GLL 150 (355)
T ss_dssp -CSSCEEEEEEC--SSEEEEEE--TTEEEEEESSTTCCBSSCCE---------------------EEEEEEEEET--TEE
T ss_pred -CCCceEEEEEc--CCEEEEEE--cCEEEEEECCCCceeeEEec---------------------cCCceEEEEc--cEE
Confidence 22345666665 44555553 457887777654 1 11110 0212 22332 344
Q ss_pred EEE-eCCCCeEEEEEcCCCc---------------e-EEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCe-EEEEecCC
Q psy13635 191 YWT-DTGTDRIEVCRLEGTH---------------R-KVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPK-IERSLLNG 252 (357)
Q Consensus 191 Y~t-d~~~~~I~~~~~~g~~---------------~-~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~-I~~~~~dg 252 (357)
-++ ....+.|...++.... . .............++++|.+..|.-+... +. |...++..
T Consensus 151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d---~~~v~iwd~~~ 227 (355)
T 3vu4_A 151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQD---GTIIRVFKTED 227 (355)
T ss_dssp EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETT---CSEEEEEETTT
T ss_pred EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCC---CCEEEEEECCC
Confidence 443 3445667777766432 0 12223344567899999864444444433 46 88888775
Q ss_pred CceEEEee-C-CCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCC
Q psy13635 253 GERVLLVK-D-RLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDG 295 (357)
Q Consensus 253 ~~~~~~~~-~-~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG 295 (357)
......+. . .-....++++++.+..| .+-...+.|...++..
T Consensus 228 ~~~~~~~~~g~h~~~v~~~~~s~~~~~l-~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 228 GVLVREFRRGLDRADVVDMKWSTDGSKL-AVVSDKWTLHVFEIFN 271 (355)
T ss_dssp CCEEEEEECTTCCSCEEEEEECTTSCEE-EEEETTCEEEEEESSC
T ss_pred CcEEEEEEcCCCCCcEEEEEECCCCCEE-EEEECCCEEEEEEccC
Confidence 44444443 2 34556899998655544 4445567888888743
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=95.25 E-value=1.4 Score=38.66 Aligned_cols=244 Identities=9% Similarity=-0.048 Sum_probs=126.1
Q ss_pred CcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcC-CCeEEEEeCCCCEEEEEEcCCC
Q psy13635 71 EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL-TEKLYWTDSETNKLEVSSLDGK 149 (357)
Q Consensus 71 ~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~-~~~ly~td~~~~~I~~~~~~g~ 149 (357)
.....++|++.+.. ..+-..++.|+..++..... .....+...-.....+++.+. .++++.+-+..+.|...++...
T Consensus 14 ~~V~~v~~s~~g~~-lasgs~D~~v~lwd~~~~~~-~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~ 91 (316)
T 3bg1_A 14 DMIHDAQMDYYGTR-LATCSSDRSVKIFDVRNGGQ-ILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENG 91 (316)
T ss_dssp CCEEEEEECGGGCE-EEEEETTTEEEEEEEETTEE-EEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSS
T ss_pred CeEEEeeEcCCCCE-EEEEeCCCeEEEEEecCCCc-EEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCC
Confidence 35678888876554 44555667787777765420 011223333345677888543 3566666667788888887653
Q ss_pred c-eEEEEecCCCCcceeeeeccCcccccCCceEEEeCCC-CeEEEEeCCCCeEEEEEcCCCceEEE---ecCCCCCceEE
Q psy13635 150 K-RKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVA-RNLYWTDTGTDRIEVCRLEGTHRKVL---VNTDLVEPRAI 224 (357)
Q Consensus 150 ~-~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~-~~lY~td~~~~~I~~~~~~g~~~~~~---~~~~~~~P~gi 224 (357)
. .......+ --.....+++.+.. +.++.+....+.|...+..+...... ..........+
T Consensus 92 ~~~~~~~~~~---------------h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~ 156 (316)
T 3bg1_A 92 TWEKSHEHAG---------------HDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAV 156 (316)
T ss_dssp CCCEEEEECC---------------CSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCC
T ss_pred cceEEEEccC---------------CCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceE
Confidence 2 22211111 11246778887653 56666777777888877765422111 11111223455
Q ss_pred EEeCCC----------------CEEEEEeCCCCCCeEEEEecCCCce---EEEeeCCCCCceEEEEecCC---CEEEEEe
Q psy13635 225 TLSPAH----------------GYLFWSDWNEKRPKIERSLLNGGER---VLLVKDRLGWPNGITLDVDN---EKLYWCD 282 (357)
Q Consensus 225 avd~~~----------------g~Ly~~d~~~~~~~I~~~~~dg~~~---~~~~~~~l~~P~giaid~~~---~~lY~~d 282 (357)
+++|.. +.++.+-... +.|...+...... ...+...-....++++.+.. +.+..+-
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D--~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~ 234 (316)
T 3bg1_A 157 SWAPAVVPGSLIDHPSGQKPNYIKRFASGGCD--NLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASC 234 (316)
T ss_dssp EECCCCCC------CCSCCCCCCCBEECCBTT--SBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEE
T ss_pred EEccccCCccccccccccCccccceEEEecCC--CeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEE
Confidence 555531 2333333322 3444444443221 11122223345788887543 2555666
Q ss_pred CCCCeEEEEeCCCC----CeEEEecCCCCceEEEEEE-CCEEEEEeCCCCeEEEEe
Q psy13635 283 AKTDKIEMIDFDGN----NRRELINENLPHVFGISLL-GDYVYWTDWQRRSIDRVN 333 (357)
Q Consensus 283 ~~~~~I~~~~~dG~----~~~~i~~~~~~~p~gia~~-~~~ly~td~~~~~I~~~~ 333 (357)
...+.|...+.+.. ....++...-.....+++. .+.+..+-...+.|...+
T Consensus 235 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 235 SQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK 290 (316)
T ss_dssp ETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred cCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 66778888877541 1111222223345677776 355555544556665444
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=95.12 E-value=2.9 Score=41.44 Aligned_cols=256 Identities=11% Similarity=-0.011 Sum_probs=127.5
Q ss_pred CCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCC----cCCceeEEEEcCCCeEEEEeCC-----CCEEEEEEcC-CCce
Q psy13635 82 KSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNG----LITPDGLAIDWLTEKLYWTDSE-----TNKLEVSSLD-GKKR 151 (357)
Q Consensus 82 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~----~~~p~glavd~~~~~ly~td~~-----~~~I~~~~~~-g~~~ 151 (357)
+++||+.. .++.|+.++..... .....-... ........+. ++.+|+.... .+.|..++.. |+..
T Consensus 117 ~~~v~v~~-~dg~l~alD~~tG~--~~W~~~~~~~~~~~~~~~~P~v~--~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~ 191 (668)
T 1kv9_A 117 GDKVYVGT-LDGRLIALDAKTGK--AIWSQQTTDPAKPYSITGAPRVV--KGKVIIGNGGAEYGVRGFVSAYDADTGKLA 191 (668)
T ss_dssp BTEEEEEC-TTSEEEEEETTTCC--EEEEEECSCTTSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred CCEEEEEc-CCCEEEEEECCCCC--EeeeeccCCCCCcceecCCCEEE--CCEEEEeCCCCCcCCCCEEEEEECCCCcEE
Confidence 68888875 35688888876443 122222211 1111223444 6788887643 4789999875 4433
Q ss_pred EEEEecCCCCcceeee---ec--cCc----------ccccCCceEEEeCCCCeEEEEeCCC------------------C
Q psy13635 152 KVLYWEDIDQPRAIAS---YK--LPT----------IEVEHPDGVAVDWVARNLYWTDTGT------------------D 198 (357)
Q Consensus 152 ~~~~~~~~~~p~~i~~---~~--~~~----------~~~~~p~glavD~~~~~lY~td~~~------------------~ 198 (357)
=..-... ..|..... +. .+. ..-..-..+++|+..+.+|+..... .
T Consensus 192 W~~~~~~-~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~ 270 (668)
T 1kv9_A 192 WRFYTVP-GDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLS 270 (668)
T ss_dssp EEEESSC-CCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred EEecccC-CCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeee
Confidence 2221110 11110000 00 000 0000112479999899999875432 1
Q ss_pred eEEEEEcC-CCceEEEecCC-------CCCce-------------EEEEeCCCCEEEEEeCCCCCCeEEEEecCCC----
Q psy13635 199 RIEVCRLE-GTHRKVLVNTD-------LVEPR-------------AITLSPAHGYLFWSDWNEKRPKIERSLLNGG---- 253 (357)
Q Consensus 199 ~I~~~~~~-g~~~~~~~~~~-------~~~P~-------------giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~---- 253 (357)
.|..+|++ |+.+-..-... ...|. -+.+...+|.+|+.|..+. ..+.+......
T Consensus 271 ~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~l~~~~~~~~~w~~ 349 (668)
T 1kv9_A 271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNG-KLISAEKFGKVTWAE 349 (668)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC-CEEEEEESSCCCSEE
T ss_pred eEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCC-CEecccccccccccc
Confidence 48888765 44332221110 11221 1334445678888887643 34433332220
Q ss_pred -----ceEEEee--------------C--CCCCceEEEEecCCCEEEEEeC-----------------------------
Q psy13635 254 -----ERVLLVK--------------D--RLGWPNGITLDVDNEKLYWCDA----------------------------- 283 (357)
Q Consensus 254 -----~~~~~~~--------------~--~l~~P~giaid~~~~~lY~~d~----------------------------- 283 (357)
....+.. . +...-.++++|+..+.+|+...
T Consensus 350 ~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 429 (668)
T 1kv9_A 350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT 429 (668)
T ss_dssp EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred ccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccC
Confidence 0001110 0 0112235899999999998421
Q ss_pred ------CCCeEEEEeCCCCCeEEEecCCCC-ceEEEEEECCEEEEEeCCCCeEEEEeCccCceeEEEec
Q psy13635 284 ------KTDKIEMIDFDGNNRRELINENLP-HVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVIIE 345 (357)
Q Consensus 284 ------~~~~I~~~~~dG~~~~~i~~~~~~-~p~gia~~~~~ly~td~~~~~I~~~~~~~g~~~~~i~~ 345 (357)
..+.|..+|+......--...... .--.++..++.+|+.+ ..+.|+.++..+|+.+..+..
T Consensus 430 ~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~-~dg~l~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 430 DVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGT-AAGQMHAYSADKGEALWQFEA 497 (668)
T ss_dssp CCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC-TTSEEEEEETTTCCEEEEEEC
T ss_pred CCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEEC-CcccchhhhhhcChhheEecC
Confidence 115688888754332211111111 1123455578888884 568899999888887766543
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.53 E-value=2.1 Score=36.95 Aligned_cols=237 Identities=11% Similarity=0.013 Sum_probs=127.9
Q ss_pred EEeecCCCCeEEEEEe-CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEE
Q psy13635 33 YALSHHVAAQMLLFAT-SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV 111 (357)
Q Consensus 33 ~~~~~~~~~~~l~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~ 111 (357)
.+++-++...+++.+. ...|+..++..................+..+ .. +..+....+.+......... .....
T Consensus 71 ~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~--~~-~l~s~~~~~~~~~~~~~~~~--~~~~~ 145 (318)
T 4ggc_A 71 SSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SY-ILSSGSRSGHIHHHDVRVAE--HHVAT 145 (318)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE--TT-EEEEEETTSEEEEEETTSSS--CEEEE
T ss_pred EEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecC--CC-EEEEEecCCceEeeecCCCc--eeEEE
Confidence 3444455555665555 4568888887643333333333444444443 33 34444445555555555443 22333
Q ss_pred EeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceE---EEEecCCCCcceeeeeccCcccccCCceEEEeCCCC
Q psy13635 112 ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRK---VLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVAR 188 (357)
Q Consensus 112 ~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~---~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~ 188 (357)
..........+++.+. ++..++-...+.|...++...... .... .........++..+..+
T Consensus 146 ~~~~~~~~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~ 209 (318)
T 4ggc_A 146 LSGHSQEVCGLRWAPD-GRHLASGGNDNLVNVWPSAPGEGGWVPLQTF---------------TQHQGAVKAVAWCPWQS 209 (318)
T ss_dssp EECCSSCEEEEEECTT-SSEEEEEETTSCEEEEESSCBTTBSCCSEEE---------------CCCCSCEEEEEECTTST
T ss_pred EcCccCceEEEEEcCC-CCEEEEEecCcceeEEECCCCcccccceeee---------------cccCCceEEEEecCCCC
Confidence 4444455677777754 445556656778888876532210 0000 00111234555555555
Q ss_pred eEEEE--eCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCc
Q psy13635 189 NLYWT--DTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWP 266 (357)
Q Consensus 189 ~lY~t--d~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P 266 (357)
.+... ....+.|...+........... .......+++.+..+.++.+.... .+.|...++........+...-...
T Consensus 210 ~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~-d~~i~iwd~~~~~~~~~l~gH~~~V 287 (318)
T 4ggc_A 210 NVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFA-QNQLVIWKYPTMAKVAELKGHTSRV 287 (318)
T ss_dssp TEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTT-TCCEEEEETTTCCEEEEECCCSSCE
T ss_pred cEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcC-CCEEEEEECCCCcEEEEEcCCCCCE
Confidence 55443 2334567777766554433332 335577888898888887765433 2578888877555544444444556
Q ss_pred eEEEEecCCCEEEEEeCCCCeEEEEeC
Q psy13635 267 NGITLDVDNEKLYWCDAKTDKIEMIDF 293 (357)
Q Consensus 267 ~giaid~~~~~lY~~d~~~~~I~~~~~ 293 (357)
.++++.+.+.. .++-...+.|..-++
T Consensus 288 ~~l~~spdg~~-l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 288 LSLTMSPDGAT-VASAAADETLRLWRC 313 (318)
T ss_dssp EEEEECTTSSC-EEEEETTTEEEEECC
T ss_pred EEEEEcCCCCE-EEEEecCCeEEEEEC
Confidence 88999864444 444445566665554
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=94.53 E-value=4.3 Score=40.61 Aligned_cols=249 Identities=7% Similarity=-0.024 Sum_probs=137.4
Q ss_pred CCeEEEEEeCCcEEEEEcCCCCcceEe--ccC--CCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeC-
Q psy13635 40 AAQMLLFATSKDIRIANLSRPLKPVTI--IKD--LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN- 114 (357)
Q Consensus 40 ~~~~l~~~~~~~i~~~~~~~~~~~~~~--~~~--~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~- 114 (357)
...+|.++....+.|+|... .... ... ......+..|. ++.||+... +.+++.+..... ......
T Consensus 31 ~~G~lWigT~~GL~ryDG~~---~~~~~~~~~~~~~~i~~i~~d~-~g~lWigT~--~Gl~~yd~~~~~----f~~~~~~ 100 (758)
T 3ott_A 31 SEGLIWIGSNKGLFSYDGYS---TQQHFTYGENNNTRIYCGVIID-NTYLYMGTD--NGILVYNYRADR----YEQPETD 100 (758)
T ss_dssp TTSCEEEEESSCEEEECSSC---EEECSCTTSTTSSCEEEEEEET-TTEEEEEET--TEEEEEETTTTE----ECCCSCC
T ss_pred CCCCEEEEECCCccccCCCc---eEEEEccCCCCCceEEEEEEcC-CCcEEEEeC--CCeEEEeCCCCE----EECcccC
Confidence 55678888888999998532 1111 111 22466676664 688888753 468888875432 111101
Q ss_pred CcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEe
Q psy13635 115 GLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTD 194 (357)
Q Consensus 115 ~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td 194 (357)
.......++. ..+.||++... .+.+++......+.+.... .++ .......+..| ..+.||+..
T Consensus 101 ~~~~i~~i~~--~~g~lWigt~~--Gl~~~~~~~~~~~~~~~~~----~~l--------~~~~i~~i~~d-~~g~lWigt 163 (758)
T 3ott_A 101 FPTDVRTMAL--QGDTLWLGALN--GLYTYQLQSRKLTSFDTRR----NGL--------PNNTIYSIIRT-KDNQIYVGT 163 (758)
T ss_dssp CCSCEEEEEE--ETTEEEEEETT--EEEEEETTTCCEEEECHHH----HCC--------SCSCEEEEEEC-TTCCEEEEE
T ss_pred CCceEEEEEe--cCCcEEEEcCC--cceeEeCCCCeEEEeccCC----CCc--------CCCeEEEEEEc-CCCCEEEEe
Confidence 1112334443 36788887643 7888887654433331100 000 01234567778 577888876
Q ss_pred CCCCeEEEEEcCCCceEEEecCC-----CCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEE
Q psy13635 195 TGTDRIEVCRLEGTHRKVLVNTD-----LVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGI 269 (357)
Q Consensus 195 ~~~~~I~~~~~~g~~~~~~~~~~-----~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~gi 269 (357)
. +-+.+++............. -.....|..|..++.||+...+ .+.+.+...........-.-.....|
T Consensus 164 ~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~----Gl~~~~~~~~~~~~~~~l~~~~i~~i 237 (758)
T 3ott_A 164 Y--NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEG----YLFQYFPSTGQIKQTEAFHNNSIKSL 237 (758)
T ss_dssp T--TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEEE----EEEEEETTTTEEEEEEEEEEEEEEEE
T ss_pred C--CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEECC----CCeEEcCCCCeEEeccCCCCCeEEEE
Confidence 4 35888887665443332111 1125678888765677776632 68888876543332211111234677
Q ss_pred EEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecC-----CC--CceEEEEEE-CCEEEEEeC
Q psy13635 270 TLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINE-----NL--PHVFGISLL-GDYVYWTDW 324 (357)
Q Consensus 270 aid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~-----~~--~~p~gia~~-~~~ly~td~ 324 (357)
..| .++.|++.-. +.+.+++.+....+.+... .+ .....|..| +|.|++.-.
T Consensus 238 ~~d-~~g~lWigT~--~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~ 297 (758)
T 3ott_A 238 ALD-GNGDLLAGTD--NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTD 297 (758)
T ss_dssp EEC-TTCCEEEEET--TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEES
T ss_pred EEc-CCCCEEEEeC--CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeC
Confidence 887 6788888763 4688888765544444321 12 134566666 466777543
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=3.9 Score=39.70 Aligned_cols=98 Identities=11% Similarity=0.058 Sum_probs=52.1
Q ss_pred eEEEEeCCCCEEEEEeCC----------------------------------CCCCeEEEEecC-CCceEEEeeCCCCCc
Q psy13635 222 RAITLSPAHGYLFWSDWN----------------------------------EKRPKIERSLLN-GGERVLLVKDRLGWP 266 (357)
Q Consensus 222 ~giavd~~~g~Ly~~d~~----------------------------------~~~~~I~~~~~d-g~~~~~~~~~~l~~P 266 (357)
.++++||.++.+|+.... ...+.|..+++. |......-... .+
T Consensus 389 ~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~--~~ 466 (571)
T 2ad6_A 389 GVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF--AA 466 (571)
T ss_dssp CBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS--CC
T ss_pred CCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC--Cc
Confidence 457899999999997531 012466666664 33333222111 11
Q ss_pred eEEEEecCCCEEEEEeCCCCeEEEEeCC-CCCeEEEecCC--CCceEEEEEECCEEEEEe
Q psy13635 267 NGITLDVDNEKLYWCDAKTDKIEMIDFD-GNNRRELINEN--LPHVFGISLLGDYVYWTD 323 (357)
Q Consensus 267 ~giaid~~~~~lY~~d~~~~~I~~~~~d-G~~~~~i~~~~--~~~p~gia~~~~~ly~td 323 (357)
.+..+...++.+|+.. ..+.++.+|.. |+.+-.+.... ...|.-. ..+|.+|+..
T Consensus 467 ~~~~~~t~gg~v~~g~-~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~-~~~G~~yv~~ 524 (571)
T 2ad6_A 467 WGGTLYTKGGLVWYAT-LDGYLKALDNKDGKELWNFKMPSGGIGSPMTY-SFKGKQYIGS 524 (571)
T ss_dssp CSBCEEETTTEEEEEC-TTSEEEEEETTTCCEEEEEECSSCCCSCCEEE-EETTEEEEEE
T ss_pred cceeEEECCCEEEEEc-CCCeEEEEECCCCCEEEEEeCCCCcEeeeEEE-EECCEEEEEE
Confidence 2222222578888864 46788888864 54443332211 2233321 2477888764
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.25 E-value=2.7 Score=37.19 Aligned_cols=157 Identities=8% Similarity=-0.068 Sum_probs=91.6
Q ss_pred CcEEEEEEEc--cCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEe-CCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcC
Q psy13635 71 EEGAAIDYYY--KKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT-NGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD 147 (357)
Q Consensus 71 ~~~~~i~~d~--~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~-~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~ 147 (357)
.....+++++ .++ ++.+-..++.|...++.... ...... ..-.....+++++ .+.++.+-..++.|...++.
T Consensus 126 ~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~---~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~ 200 (343)
T 3lrv_A 126 NEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDS---QYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLS 200 (343)
T ss_dssp SCEEEEECCC---CC-EEEEEETTCCEEEEESSSSC---EEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESS
T ss_pred CCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCc---EEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECC
Confidence 4688899988 544 44555567788888888664 122222 2223577899997 56666666678899999987
Q ss_pred CCceE-EEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecC--CCCCc---
Q psy13635 148 GKKRK-VLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNT--DLVEP--- 221 (357)
Q Consensus 148 g~~~~-~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~--~~~~P--- 221 (357)
..... ..+... --.....+++.+.+..|..+. .+.|...++........+.. .-..+
T Consensus 201 ~~~~~~~~~~~~---------------h~~~v~~l~fs~~g~~l~s~~--~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 263 (343)
T 3lrv_A 201 SPDQASSRFPVD---------------EEAKIKEVKFADNGYWMVVEC--DQTVVCFDLRKDVGTLAYPTYTIPEFKTGT 263 (343)
T ss_dssp CTTSCCEECCCC---------------TTSCEEEEEECTTSSEEEEEE--SSBEEEEETTSSTTCBSSCCCBC-----CC
T ss_pred CCCCCccEEecc---------------CCCCEEEEEEeCCCCEEEEEe--CCeEEEEEcCCCCcceeecccccccccccc
Confidence 55432 211110 113567888887666666655 33888888775432111110 00112
Q ss_pred eEEEEeCCCCEEEEEeCCCCCCeEEEEecC
Q psy13635 222 RAITLSPAHGYLFWSDWNEKRPKIERSLLN 251 (357)
Q Consensus 222 ~giavd~~~g~Ly~~d~~~~~~~I~~~~~d 251 (357)
..++++|.+..|..+..+. +.|...+.+
T Consensus 264 ~~~~~~~~g~~l~~~s~~d--~~i~v~~~~ 291 (343)
T 3lrv_A 264 VTYDIDDSGKNMIAYSNES--NSLTIYKFD 291 (343)
T ss_dssp EEEEECTTSSEEEEEETTT--TEEEEEEEC
T ss_pred eEEEECCCCCEEEEecCCC--CcEEEEEEc
Confidence 3599998766666654422 355555553
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=93.89 E-value=5.2 Score=39.10 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=23.1
Q ss_pred EEEECCEEEEEeCCCCeEEEEeCccCceeEEE
Q psy13635 312 ISLLGDYVYWTDWQRRSIDRVNKITGNDREVI 343 (357)
Q Consensus 312 ia~~~~~ly~td~~~~~I~~~~~~~g~~~~~i 343 (357)
++..++.+|+.. ..+.++.+|..+|+.+-..
T Consensus 480 ~~tagg~vf~gt-~dg~l~A~D~~tG~~lW~~ 510 (599)
T 1w6s_A 480 MATAGDLVFYGT-LDGYLKARDSDTGDLLWKF 510 (599)
T ss_dssp EEETTTEEEEEC-TTSEEEEEETTTCCEEEEE
T ss_pred eEecCCEEEEEC-CCCeEEEEECCCCCEEEEe
Confidence 555678888864 4578889998888876655
|
| >1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A* | Back alignment and structure |
|---|
Probab=93.46 E-value=7.3 Score=39.41 Aligned_cols=256 Identities=11% Similarity=0.064 Sum_probs=134.3
Q ss_pred CcEEEEEEEccC-CEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCc-------CCceeEEEEcCC-CeEEEEeCC-C--
Q psy13635 71 EEGAAIDYYYKK-SMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGL-------ITPDGLAIDWLT-EKLYWTDSE-T-- 138 (357)
Q Consensus 71 ~~~~~i~~d~~~-~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~-------~~p~glavd~~~-~~ly~td~~-~-- 138 (357)
....+|++++.+ +.+|.. ...+.|+|..-.|.. .+.+.... .....|++|+.. +.+|++-.. .
T Consensus 15 g~i~~i~~~p~~~~~~~a~-~~~ggv~rS~DgG~t----W~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~ 89 (789)
T 1sqj_A 15 GYITGIVAHPKTKDLLYAR-TDIGGAYRWDAGTSK----WIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGD 89 (789)
T ss_dssp SCEEEEEECSSSTTCEEEE-ESSSCEEEEETTTTE----EEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTS
T ss_pred CcEEEEEECCCCCCEEEEE-ecCCCEEEecCCCCC----eeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCC
Confidence 478889999865 455554 444568877755653 44444322 356789999743 567776432 2
Q ss_pred --CEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCC-eEEEEeCCCCeEEEEEcCCCceEEEec
Q psy13635 139 --NKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVAR-NLYWTDTGTDRIEVCRLEGTHRKVLVN 215 (357)
Q Consensus 139 --~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~-~lY~td~~~~~I~~~~~~g~~~~~~~~ 215 (357)
+.|++..=.|..=+.+. ..+..+.. ...-.....|++|+.+. .+|+ -...+.|++..-.|+.=+.+..
T Consensus 90 ~~~~v~~S~DgG~TW~~~~-~~~~~~~~-------~~~~~~~~~iav~p~~~~~v~~-g~~~~gl~~S~DgG~TW~~~~~ 160 (789)
T 1sqj_A 90 EWAAFYVSEDRGQSFTIYE-SPFPMGAN-------DMGRNNGERLAVNPFNSNEVWM-GTRTEGIWKSSDRAKTWTNVTS 160 (789)
T ss_dssp SCCEEEEESSTTSEEEEEE-CSSCCCTT-------STTTTSCCCEEEETTEEEEEEE-ECSSSCEEEESSTTSSCEEETT
T ss_pred cccEEEEECCCCCcceecc-CCcccCcc-------CCCccceeEEEEcCCCCCEEEE-EeccCCEEEECCCCcccCCCcc
Confidence 56666543443323332 11100000 00001235689998754 4554 3334567776544544333321
Q ss_pred C-----CCCCceEEEEeCCC-CEEEEEeCCCCCCeEEEEecCCCceEEEeeC---CC---------------CCceEEEE
Q psy13635 216 T-----DLVEPRAITLSPAH-GYLFWSDWNEKRPKIERSLLNGGERVLLVKD---RL---------------GWPNGITL 271 (357)
Q Consensus 216 ~-----~~~~P~giavd~~~-g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~---~l---------------~~P~giai 271 (357)
. .-.....|+++|.+ +.||.+.... ..|++.. ||......+.. .. ..|..+++
T Consensus 161 ~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~--~~v~~S~-DgG~TW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (789)
T 1sqj_A 161 IPDAFTNGIGYTSVIFDPERNGTIYASATAP--QGMYVTH-DGGVSWEPVAGQPSSWLNRTTGAFPDKKPASIAPQPMKV 237 (789)
T ss_dssp SCCCCSTTTCEEEEEECTTSTTCEEEEESST--TCEEEES-STTSSCEECTTCCCSCCHHHHHTSTTCCCSSSSCEEEEE
T ss_pred CccccCCCCCeEEEEECCCCCCEEEEEEcCC--CeEEEEc-CCCcCcccCCCCcCccccccccccCcccccccccceeEE
Confidence 0 01234578888854 4788877542 3676654 44333332221 11 12388899
Q ss_pred ecCCCEEEEEe--------CCCCeEEEEeCCCCCeEEEecCCC----------C----ceEEEEEE---CCEEEEEeCCC
Q psy13635 272 DVDNEKLYWCD--------AKTDKIEMIDFDGNNRRELINENL----------P----HVFGISLL---GDYVYWTDWQR 326 (357)
Q Consensus 272 d~~~~~lY~~d--------~~~~~I~~~~~dG~~~~~i~~~~~----------~----~p~gia~~---~~~ly~td~~~ 326 (357)
++..+.||.+- ...+.|++.+-.|..=+.+..... . .-.+|+++ .+.+|+.-...
T Consensus 238 ~p~~~~l~~~~~~~~~p~~g~~g~l~~S~DgG~tW~~~~~~~~~~~p~~~~~~~~~~~g~~~lav~p~~~~~v~~~~~~~ 317 (789)
T 1sqj_A 238 ALTPNFLYVTYADYPGPWGVTFGEVWRQNRTSGAWDDITPRVGNSSPAPYNNQTFPAGGFCGLSVDATNPNRLVVITLDR 317 (789)
T ss_dssp EECSSEEEEEEESSCSSSCCCCCCEEEEETTTCCEEECCCCTTTEESCCCSSCCSCCCEEEEEEEETTEEEEEEEEEECC
T ss_pred cCCCCeEEEEEecCCCCCCCCCceEEEEeCCCCceEECcCCCCccccccccccccccCceEEEEECCCCCCEEEEEEecc
Confidence 87788999872 245678887755554333321000 0 12467776 35788865321
Q ss_pred ------CeEEEEeCccCceeEEEe
Q psy13635 327 ------RSIDRVNKITGNDREVII 344 (357)
Q Consensus 327 ------~~I~~~~~~~g~~~~~i~ 344 (357)
+.|++=. ..|+.-+.+.
T Consensus 318 ~~~~~~~~l~~S~-DgG~tW~~~~ 340 (789)
T 1sqj_A 318 DPGPALDSIYLST-DAGATWKDVT 340 (789)
T ss_dssp CSCSSCCCEEEES-STTSSEEEHH
T ss_pred CCCcccccEEEec-CCCCCceeCc
Confidence 4565543 2466555443
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=93.19 E-value=7.3 Score=38.61 Aligned_cols=139 Identities=12% Similarity=0.026 Sum_probs=73.3
Q ss_pred CCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCc----------CCceeEEEEcCCCeEEEEeCCCCEEEEEEcC-CCc
Q psy13635 82 KSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGL----------ITPDGLAIDWLTEKLYWTDSETNKLEVSSLD-GKK 150 (357)
Q Consensus 82 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~----------~~p~glavd~~~~~ly~td~~~~~I~~~~~~-g~~ 150 (357)
++.||++.. .+.|+.++..... ...+.-...- ....+++++ +++||+... .+++..++.. |+.
T Consensus 77 ~g~vyv~~~-~~~v~AlD~~tG~--~~W~~~~~~~~~~~~~~~~~~~~~~~a~~--~~~v~v~~~-dg~l~alD~~tG~~ 150 (677)
T 1kb0_A 77 DGIMYVSAS-WSVVHAIDTRTGN--RIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAW-DGRLIALDAATGKE 150 (677)
T ss_dssp TTEEEEECG-GGCEEEEETTTTE--EEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECT-TSEEEEEETTTCCE
T ss_pred CCEEEEECC-CCeEEEEECCCCc--EEEEEcCCCCccccccccccCCCCCceEE--CCEEEEEcC-CCEEEEEECCCCCE
Confidence 678888765 3567777775442 1122111110 123567887 788998754 5789999974 554
Q ss_pred eEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC-----CCeEEEEEcC-CCceEEEecCCCC-----
Q psy13635 151 RKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG-----TDRIEVCRLE-GTHRKVLVNTDLV----- 219 (357)
Q Consensus 151 ~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~-----~~~I~~~~~~-g~~~~~~~~~~~~----- 219 (357)
+-..- .....+.+. . .....+++ ++.+|+.... .+.|..+|.. |+.+-......-.
T Consensus 151 ~W~~~-~~~~~~~~~--------~--~~~~p~v~--~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~ 217 (677)
T 1kb0_A 151 VWHQN-TFEGQKGSL--------T--ITGAPRVF--KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPF 217 (677)
T ss_dssp EEEEE-TTTTCCSSC--------B--CCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred Eeeec-CCcCcCcCc--------c--cccCcEEE--CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccc
Confidence 32221 110000000 0 01111233 5678876543 4577888764 5544333211100
Q ss_pred -----------Cc---------------eEEEEeCCCCEEEEEeCC
Q psy13635 220 -----------EP---------------RAITLSPAHGYLFWSDWN 239 (357)
Q Consensus 220 -----------~P---------------~giavd~~~g~Ly~~d~~ 239 (357)
.+ ..+++|+..+.||+....
T Consensus 218 ~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~ 263 (677)
T 1kb0_A 218 EDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGN 263 (677)
T ss_dssp SSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCC
T ss_pred cccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCC
Confidence 00 357899999999998654
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.12 E-value=6.3 Score=37.71 Aligned_cols=223 Identities=8% Similarity=-0.102 Sum_probs=118.4
Q ss_pred CcEEEEEcCCCCcc-e--E-eccCCCcEEEEEEEcc-----CCEEEEEeCCCCeEEEEEcCCCCcce--------eEEEE
Q psy13635 50 KDIRIANLSRPLKP-V--T-IIKDLEEGAAIDYYYK-----KSMVCWTDHGTEMISCCTFDGNNVGS--------KHNVI 112 (357)
Q Consensus 50 ~~i~~~~~~~~~~~-~--~-~~~~~~~~~~i~~d~~-----~~~ly~~d~~~~~I~~~~~~g~~~~~--------~~~~~ 112 (357)
..|+..++++.... . . +.........+++.|. ++.+..+-..++.|...++....... ....+
T Consensus 183 ~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l 262 (524)
T 2j04_B 183 SCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTL 262 (524)
T ss_dssp EEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEE
T ss_pred ceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEE
Confidence 34666666553211 1 1 2233456888999885 23455555566778877776542100 00122
Q ss_pred eCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCC-ceEEEEecCCCCcceeeeeccCcccccCCceEEEe-CCCC-e
Q psy13635 113 TNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGK-KRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVD-WVAR-N 189 (357)
Q Consensus 113 ~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~-~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD-~~~~-~ 189 (357)
...-....++++.+ .+ ...+-..++.|...++... ......... -....++++. +..+ .
T Consensus 263 ~~h~~~v~sv~~s~-~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H----------------~~~V~sv~~~~s~~g~~ 324 (524)
T 2j04_B 263 SLADSLITTFDFLS-PT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVH----------------DSYILSVSTAYSDFEDT 324 (524)
T ss_dssp CCTTTCEEEEEESS-SS-EEEEEETTSEEEEEETTBCSSCSEEEECS----------------SSCEEEEEEECCTTSCC
T ss_pred EcCCCCEEEEEecC-CC-eEEEEeCCCEEEEEECCCCCCceEEeecc----------------cccEEEEEEEcCCCCCe
Confidence 22223456666654 33 4566667899999998743 221111110 0134455322 2334 7
Q ss_pred EEEEeCCCCeEEEEEcCCCc-eEEEec-CCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCce-EEEeeCCCCCc
Q psy13635 190 LYWTDTGTDRIEVCRLEGTH-RKVLVN-TDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGER-VLLVKDRLGWP 266 (357)
Q Consensus 190 lY~td~~~~~I~~~~~~g~~-~~~~~~-~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~-~~~~~~~l~~P 266 (357)
++.+....+.|...++.... ...+.. ........++++|... .+.+-... ..|...++..... ..+. ......
T Consensus 325 ~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~-~l~s~~~d--~tv~lwd~~~~~~~~~l~-gH~~~V 400 (524)
T 2j04_B 325 VVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIY-SYIYSDGA--SSLRAVPSRAAFAVHPLV-SRETTI 400 (524)
T ss_dssp EEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTT-EEEEECSS--SEEEEEETTCTTCCEEEE-ECSSCE
T ss_pred EEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcC-eEEEeCCC--CcEEEEECcccccceeee-cCCCce
Confidence 77787777888888875422 222221 1112346799998644 44554442 4676666654433 3332 334566
Q ss_pred eEEEEecCCCEEEEEeCCCCeEEEEeCCC
Q psy13635 267 NGITLDVDNEKLYWCDAKTDKIEMIDFDG 295 (357)
Q Consensus 267 ~giaid~~~~~lY~~d~~~~~I~~~~~dG 295 (357)
.++++.+. +..+.+-...+.|...+..+
T Consensus 401 ~sva~Sp~-g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 401 TAIGVSRL-HPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp EEEECCSS-CCBCEEEETTTEEECCBSCS
T ss_pred EEEEeCCC-CCeEEEEECCCEEEEEechH
Confidence 88888754 44445555566776666543
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.04 E-value=4.4 Score=35.69 Aligned_cols=263 Identities=8% Similarity=-0.014 Sum_probs=129.6
Q ss_pred CCcEEEEEcCCCC-cceEec--c-CCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCC----cceeEEEEeCCcCCce
Q psy13635 49 SKDIRIANLSRPL-KPVTII--K-DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNN----VGSKHNVITNGLITPD 120 (357)
Q Consensus 49 ~~~i~~~~~~~~~-~~~~~~--~-~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~----~~~~~~~~~~~~~~p~ 120 (357)
...|+..++.... ...... . ......++++++.+..|. +-..++.|+..+..... ..+....+...-....
T Consensus 33 D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~la-s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~ 111 (330)
T 2hes_X 33 DRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLA-AGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVK 111 (330)
T ss_dssp SSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEE-EEETTSCEEEEEC-------CCCEEEEEEC----CEE
T ss_pred CCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEE-EEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEE
Confidence 4568888886522 111122 2 345678999998665544 44456677777664321 0011223333345678
Q ss_pred eEEEEcCCCeEEEEeCCCCEEEEEEcCCC--ceEEEE-ecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCC
Q psy13635 121 GLAIDWLTEKLYWTDSETNKLEVSSLDGK--KRKVLY-WEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGT 197 (357)
Q Consensus 121 glavd~~~~~ly~td~~~~~I~~~~~~g~--~~~~~~-~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~ 197 (357)
++++.+. ++.+.+-...+.|...+++.. ..+.+. ..+ --.....+++.+.+. ++++-...
T Consensus 112 ~v~~sp~-g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~---------------h~~~v~~v~~~p~~~-~l~s~s~D 174 (330)
T 2hes_X 112 GVAWSND-GYYLATCSRDKSVWIWETDESGEEYECISVLQE---------------HSQDVKHVIWHPSEA-LLASSSYD 174 (330)
T ss_dssp EEEECTT-SCEEEEEETTSCEEEEECCTTCCCCEEEEEECC---------------CSSCEEEEEECSSSS-EEEEEETT
T ss_pred EEEECCC-CCEEEEEeCCCEEEEEeccCCCCCeEEEEEecc---------------CCCceEEEEECCCCC-EEEEEcCC
Confidence 8999975 455556666788998888422 112111 111 112456788886554 45555556
Q ss_pred CeEEEEEcCCC--ceEEEecCCCCCceEEEEeCCC-C-EEEEEeCCCCCCeEEEEecCCC-----c---eEEEeeC-CCC
Q psy13635 198 DRIEVCRLEGT--HRKVLVNTDLVEPRAITLSPAH-G-YLFWSDWNEKRPKIERSLLNGG-----E---RVLLVKD-RLG 264 (357)
Q Consensus 198 ~~I~~~~~~g~--~~~~~~~~~~~~P~giavd~~~-g-~Ly~~d~~~~~~~I~~~~~dg~-----~---~~~~~~~-~l~ 264 (357)
+.|..-+.... ...............++++|.. + .|.-+... +.|...++.+. . ....+.. .-.
T Consensus 175 ~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D---~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~ 251 (330)
T 2hes_X 175 DTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDD---STVRVWKYMGDDEDDQQEWVCEAILPDVHKR 251 (330)
T ss_dssp SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETT---SCEEEEEEEEECTTSCEEEEEEEECCSCCSS
T ss_pred CeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCC---CeEEEEEecCCCccccceeEEeeeccccccc
Confidence 67777665433 1222233334567889999863 3 34333333 34444443321 0 1111111 223
Q ss_pred CceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEE---ecCCCC-ceEEEEEE---CCEEEEEeCCCCeEEEEeC
Q psy13635 265 WPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRREL---INENLP-HVFGISLL---GDYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 265 ~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i---~~~~~~-~p~gia~~---~~~ly~td~~~~~I~~~~~ 334 (357)
....+++. .++.| .+-...+.|...+......+.+ ...... ....+++. ++.+..+-...+.|..-+.
T Consensus 252 ~v~~v~~s-~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 252 QVYNVAWG-FNGLI-ASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp CEEEEEEC-TTSCE-EEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred ceEEEEEc-CCCEE-EEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence 45678886 44544 4444566777776543321111 111222 34455553 2455555555566655443
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=92.97 E-value=5.7 Score=36.83 Aligned_cols=200 Identities=10% Similarity=-0.061 Sum_probs=112.4
Q ss_pred CceeEEEEcCCCeEEE---EeCCCCEEEEEEcCCC------ce---EEEEecCCCCcceeeeeccCcccccCCceEEEeC
Q psy13635 118 TPDGLAIDWLTEKLYW---TDSETNKLEVSSLDGK------KR---KVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDW 185 (357)
Q Consensus 118 ~p~glavd~~~~~ly~---td~~~~~I~~~~~~g~------~~---~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~ 185 (357)
.+..+++++.++.|++ +....+.|...++... .. ..+. .. ..--..+.++++.+
T Consensus 94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~-~~-------------~~h~~~V~~v~~~p 159 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHK-LL-------------KDAGGMVIDMKWNP 159 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEE-CC-------------CSGGGSEEEEEECS
T ss_pred cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeee-cc-------------CCCCCceEEEEECC
Confidence 4788999987777776 5666788888876432 00 0110 00 11123567889988
Q ss_pred CCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCC-CC
Q psy13635 186 VARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDR-LG 264 (357)
Q Consensus 186 ~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~-l~ 264 (357)
..+.++.+....+.|...++...............+..++++|.+..|+.+... +.|...+.++.....+.... ..
T Consensus 160 ~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~d---g~v~iwd~~~~~~~~~~~~~~~~ 236 (434)
T 2oit_A 160 TVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQN---GTVVQYLPTLQEKKVIPCPPFYE 236 (434)
T ss_dssp SCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETT---SCEEEECTTCCEEEEECCCTTCC
T ss_pred CCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCC---CcEEEEccCCcccccccCCcccC
Confidence 767788777777889998887653322222223468899999986667666644 58888888855444432211 11
Q ss_pred -----CceEEEEecCCCEEEEEeCCC------CeEEEEeCCCCC---eEEEec-CC------CC-ce-EEEEE--ECCEE
Q psy13635 265 -----WPNGITLDVDNEKLYWCDAKT------DKIEMIDFDGNN---RRELIN-EN------LP-HV-FGISL--LGDYV 319 (357)
Q Consensus 265 -----~P~giaid~~~~~lY~~d~~~------~~I~~~~~dG~~---~~~i~~-~~------~~-~p-~gia~--~~~~l 319 (357)
...+++.+.....+.....+. ..+...++.... ...+.. .. .. .| +-+.. +-+.+
T Consensus 237 ~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~ 316 (434)
T 2oit_A 237 SDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLV 316 (434)
T ss_dssp TTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEE
T ss_pred CCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEE
Confidence 335666664222222223222 225555554321 111111 00 11 22 22222 13789
Q ss_pred EEEeCCCCeEEEEeC
Q psy13635 320 YWTDWQRRSIDRVNK 334 (357)
Q Consensus 320 y~td~~~~~I~~~~~ 334 (357)
|++++.+..|..+.+
T Consensus 317 ~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 317 LAASAASTEVSILAR 331 (434)
T ss_dssp EEEETTCSBCEEEEE
T ss_pred EEecCCCCceeEEEe
Confidence 999999888877765
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.94 E-value=3.6 Score=39.99 Aligned_cols=152 Identities=5% Similarity=0.020 Sum_probs=89.9
Q ss_pred CCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCC----CCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCC
Q psy13635 177 HPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDL----VEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNG 252 (357)
Q Consensus 177 ~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~----~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg 252 (357)
...+++..|.+..|= +-...+.|...+.++ ......... .....++++|.+..|+.+... +.|...++.+
T Consensus 87 ~V~~vawSPdG~~LA-s~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~D---GtVkIWd~~~ 160 (588)
T 2j04_A 87 YPRVCKPSPIDDWMA-VLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNED---GELQFFSIRK 160 (588)
T ss_dssp CEEEEEECSSSSCEE-EEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETT---SEEEEEECCC
T ss_pred cEEEEEECCCCCEEE-EEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCC---CEEEEEECCC
Confidence 456677776554444 444455666666444 211111111 136789999998888888776 5777777776
Q ss_pred Cce--------EEEe---eCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeE----EEecCCCCceEEEEEECC
Q psy13635 253 GER--------VLLV---KDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRR----ELINENLPHVFGISLLGD 317 (357)
Q Consensus 253 ~~~--------~~~~---~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~----~i~~~~~~~p~gia~~~~ 317 (357)
... ..+- .....+...+++.+ ++ +++-...+.|+..+.++.... .+....-....++++.++
T Consensus 161 ~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~ 237 (588)
T 2j04_A 161 NSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDY 237 (588)
T ss_dssp CTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETT
T ss_pred CccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEECC
Confidence 642 2221 12235778999985 44 455566788999998886632 232222234566776655
Q ss_pred EEEEEeCCCCeEEEEeCccCce
Q psy13635 318 YVYWTDWQRRSIDRVNKITGND 339 (357)
Q Consensus 318 ~ly~td~~~~~I~~~~~~~g~~ 339 (357)
.|-.+. .++|...+..+++.
T Consensus 238 ~LASa~--~~tIkLWd~~~~~~ 257 (588)
T 2j04_A 238 KVVLTC--PGYVHKIDLKNYSI 257 (588)
T ss_dssp EEEEEC--SSEEEEEETTTTEE
T ss_pred EEEEEe--CCeEEEEECCCCeE
Confidence 555553 46888887744444
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=92.88 E-value=5.3 Score=36.22 Aligned_cols=196 Identities=7% Similarity=-0.123 Sum_probs=100.4
Q ss_pred CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEE----------------
Q psy13635 49 SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI---------------- 112 (357)
Q Consensus 49 ~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~---------------- 112 (357)
++.|+.-|+............-....+++|+|.+..+..+-..++.|+..++...... .+..
T Consensus 165 D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~--~~~~~~~~~~~~~~~s~~~~ 242 (393)
T 4gq1_A 165 DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSA--EENSQTELVKNPWLLTLNTL 242 (393)
T ss_dssp TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC------------CSCCCSEEEESG
T ss_pred CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccc--ccccccCCcccceEEecccc
Confidence 5678888886644444555566678899999977777777777788888887654310 1000
Q ss_pred --------eCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccC----cccccCCce
Q psy13635 113 --------TNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLP----TIEVEHPDG 180 (357)
Q Consensus 113 --------~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~----~~~~~~p~g 180 (357)
.........+++....++...+-...+++...++........+......-..... .+ ........+
T Consensus 243 ~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 320 (393)
T 4gq1_A 243 PLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNL--LPNVQGISLFPSLLG 320 (393)
T ss_dssp GGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CC--SCSEEEECSSCCSSC
T ss_pred cceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEE--ccccccccccCccee
Confidence 0111233455655445555566666777777776433221111000000000000 00 001112223
Q ss_pred EEEeCCCCeEE-EEeCCCCeEEEEEcCCC-ceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCC
Q psy13635 181 VAVDWVARNLY-WTDTGTDRIEVCRLEGT-HRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGG 253 (357)
Q Consensus 181 lavD~~~~~lY-~td~~~~~I~~~~~~g~-~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~ 253 (357)
....+..+.+| .+....+.|...+.... ....... .-.....++++|.+..|-.+..+ .+..+.+.|.
T Consensus 321 ~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~-~~~~V~svafspdG~~LA~as~~----Gv~lvrL~gf 390 (393)
T 4gq1_A 321 ACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQ-LGMPIVDFCWHQDGSHLAIATEG----SVLLTRLMGF 390 (393)
T ss_dssp CEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEE-CSSCEEEEEECTTSSEEEEEESS----EEEEEEEGGG
T ss_pred EEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecC-CCCcEEEEEEcCCCCEEEEEeCC----CeEEEEEeCc
Confidence 33333444444 44555678888887743 3333332 33457899999986666655433 5655555543
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=92.58 E-value=8.9 Score=38.06 Aligned_cols=59 Identities=14% Similarity=-0.090 Sum_probs=33.8
Q ss_pred CeEEEEeCCCCCeEEEecCCCCceEE-EEEECCEEEEEeCCCCeEEEEeCccCceeEEEec
Q psy13635 286 DKIEMIDFDGNNRRELINENLPHVFG-ISLLGDYVYWTDWQRRSIDRVNKITGNDREVIIE 345 (357)
Q Consensus 286 ~~I~~~~~dG~~~~~i~~~~~~~p~g-ia~~~~~ly~td~~~~~I~~~~~~~g~~~~~i~~ 345 (357)
+.+..+|+......--.........| ++..++.+|.. ...+.++.+|..+|+.+-....
T Consensus 455 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g-t~dg~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEG-SADGRVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTTCCEEEEEEC
T ss_pred eeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEE-CCCCcEEEEECCCCccceeeeC
Confidence 56888887543322222111211122 33446777776 4568899999888887765533
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=92.50 E-value=6.1 Score=35.95 Aligned_cols=224 Identities=14% Similarity=0.044 Sum_probs=114.5
Q ss_pred cEEEEEEEcc--CCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCC-----------------c--CCceeEEEEcC-CC
Q psy13635 72 EGAAIDYYYK--KSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNG-----------------L--ITPDGLAIDWL-TE 129 (357)
Q Consensus 72 ~~~~i~~d~~--~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~-----------------~--~~p~glavd~~-~~ 129 (357)
...++++++. .+.||.... .+.|++..-.|.. .+.+... . .....|++|+. .+
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~-~ggl~~S~DgG~t----W~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~ 190 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTS-PQGLFRSTDHGAS----WEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPK 190 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEE-TTEEEEESSTTSB----CEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTT
T ss_pred ceeEEEeCCCCCCCEEEEEec-CCcEEEEcCCCCC----eEECcCccCCccccccccccccCCCCCCceeEEEECCCCCC
Confidence 4567888874 577776532 4578877555543 3322210 0 12347888874 46
Q ss_pred eEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcc---cccCCceEEEeCCC-CeEEEEeCCCCeEEEEEc
Q psy13635 130 KLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTI---EVEHPDGVAVDWVA-RNLYWTDTGTDRIEVCRL 205 (357)
Q Consensus 130 ~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~---~~~~p~glavD~~~-~~lY~td~~~~~I~~~~~ 205 (357)
.||+.... +.|++..-.|..-+.+. .+... .. +|.. ....+..|++|+.+ +.||+... +.|++.+-
T Consensus 191 ~l~vg~~~-ggl~~s~DgG~tW~~~~-~~~~~-~~-----~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~--~gl~~s~D 260 (394)
T 3b7f_A 191 HLYIGMSS-GGVFESTDAGTDWKPLN-RGCAA-NF-----LPDPNVEFGHDPHCVVQHPAAPDILYQQNH--CGIYRMDR 260 (394)
T ss_dssp CEEEEEET-BEEEEESSTTSSCEECC-TTCCC-TT-----SSSSSSSSCBCEEEEEECSSSTTEEEEEET--TEEEEEET
T ss_pred EEEEEECC-CCEEEECCCCCCceECC-CCccc-cc-----cCCCccccCcceeEEEECCCCCCEEEEEcC--CeEEEeCC
Confidence 78887532 35666554444333221 11000 00 0000 01235678999764 67887654 45888775
Q ss_pred CCCceEEEecCCCC-----CceEEEEeCC-CCEEEEEeCC----------CCCCeEEEEecCCCceEEEeeCCCCC----
Q psy13635 206 EGTHRKVLVNTDLV-----EPRAITLSPA-HGYLFWSDWN----------EKRPKIERSLLNGGERVLLVKDRLGW---- 265 (357)
Q Consensus 206 ~g~~~~~~~~~~~~-----~P~giavd~~-~g~Ly~~d~~----------~~~~~I~~~~~dg~~~~~~~~~~l~~---- 265 (357)
.|..-+.+. ..+. ....|+++|. .+.||+.... .....|++..-.|..-+.+ ..++..
T Consensus 261 ~G~tW~~~~-~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~-~~glp~~~~~ 338 (394)
T 3b7f_A 261 REGVWKRIG-DAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQ-DRGLPTDQAW 338 (394)
T ss_dssp TTTEEECGG-GGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEE-CBTSCCSSCC
T ss_pred CCCcceECC-CCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceEC-CCCCCCcccc
Confidence 565433322 1122 2346888863 4678886421 1113676654334333333 233322
Q ss_pred ----ceEEEEecCC-CEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEE
Q psy13635 266 ----PNGITLDVDN-EKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISL 314 (357)
Q Consensus 266 ----P~giaid~~~-~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~ 314 (357)
..++++|+.+ +.||+.- ..+.|++..-.|..=+.+. ..++....+++
T Consensus 339 ~~~~~~~~~~~p~~~~~l~~g~-~~g~l~~S~D~G~tW~~~~-~~lp~~~~v~~ 390 (394)
T 3b7f_A 339 LTVKRQAMTADAHAPVGVYFGT-TGGEIWASADEGEHWQCIA-SHLPHIYAVQS 390 (394)
T ss_dssp CCCCTBSEEECCSSSCCEEEEC-TTSCEEEESSTTSBCEEEE-CSCSCEEEEEE
T ss_pred ceEEEEEEEECCCCCCEEEEEe-CCCeEEEECCCCCCceEcc-cCCCCeeEEEE
Confidence 1368888654 4577753 3456777765665544443 34555555443
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.28 E-value=8.8 Score=37.27 Aligned_cols=173 Identities=6% Similarity=-0.077 Sum_probs=104.8
Q ss_pred CCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCc----CCceeEEEEcCCCeEEEEeCCCCEEEEEE
Q psy13635 70 LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGL----ITPDGLAIDWLTEKLYWTDSETNKLEVSS 145 (357)
Q Consensus 70 ~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~----~~p~glavd~~~~~ly~td~~~~~I~~~~ 145 (357)
.....++++.|++..|-.+.. ++.+...+.++. ...+.+.. ....++++.|.++.|+.+. ..++|...+
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~-dg~V~iwd~~~~-----l~~l~~~~~~~~~sv~svafSPDG~~LAsgs-~DGtVkIWd 157 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSN-NGNVSVFKDNKM-----LTNLDSKGNLSSRTYHCFEWNPIESSIVVGN-EDGELQFFS 157 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEET-TSCEEEEETTEE-----EEECCCSSCSTTTCEEEEEECSSSSCEEEEE-TTSEEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeC-CCcEEEEeCCce-----eeeccCCCccccccEEEEEEcCCCCEEEEEc-CCCEEEEEE
Confidence 456889999987666655543 445555553321 22222111 1467899999877777665 478999999
Q ss_pred cCCCce--------EEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceE----EE
Q psy13635 146 LDGKKR--------KVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRK----VL 213 (357)
Q Consensus 146 ~~g~~~--------~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~----~~ 213 (357)
+.+... ..+ .... .+...+...+++.|.+ +++-...+.|...+.++.... .+
T Consensus 158 ~~~~~l~~~~~i~l~ti-~~~~------------~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL 221 (588)
T 2j04_A 158 IRKNSENTPEFYFESSI-RLSD------------AGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMI 221 (588)
T ss_dssp CCCCTTTCCCCEEEEEE-ECSC------------TTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEE
T ss_pred CCCCccccccceeeeee-eccc------------ccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeee
Confidence 887642 222 1110 0111356777777543 556666778888888876632 23
Q ss_pred ecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEE
Q psy13635 214 VNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITL 271 (357)
Q Consensus 214 ~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giai 271 (357)
....-....++++. ++.|-.+. . +.|...+..+...............++++
T Consensus 222 ~~~h~~~V~svaFs--g~~LASa~-~---~tIkLWd~~~~~~~~~~~gh~~~V~~va~ 273 (588)
T 2j04_A 222 QNASRRKITDLKIV--DYKVVLTC-P---GYVHKIDLKNYSISSLKTGSLENFHIIPL 273 (588)
T ss_dssp ECCCSSCCCCEEEE--TTEEEEEC-S---SEEEEEETTTTEEEEEECSCCSCCCEEEE
T ss_pred cccccCcEEEEEEE--CCEEEEEe-C---CeEEEEECCCCeEEEEEcCCCceEEEEEe
Confidence 22233467888888 35665553 2 48988998887665554344455677888
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.15 E-value=8.5 Score=36.81 Aligned_cols=235 Identities=6% Similarity=-0.130 Sum_probs=113.7
Q ss_pred EEEEeCCCCeEEEEEcCCCCccee-EEEEeCCcCCceeEEEEcC-----CCeEEEEeCCCCEEEEEEcCCCceE---EEE
Q psy13635 85 VCWTDHGTEMISCCTFDGNNVGSK-HNVITNGLITPDGLAIDWL-----TEKLYWTDSETNKLEVSSLDGKKRK---VLY 155 (357)
Q Consensus 85 ly~~d~~~~~I~~~~~~g~~~~~~-~~~~~~~~~~p~glavd~~-----~~~ly~td~~~~~I~~~~~~g~~~~---~~~ 155 (357)
++.+...++.|...++++...... ...+......+..+++.+. .+.+..+-+..+.|...++...... ..
T Consensus 175 ~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~- 253 (524)
T 2j04_B 175 MFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFK- 253 (524)
T ss_dssp -------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEE-
T ss_pred hhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccce-
Confidence 344444455566556655431100 1122223345677888764 2456666666788888887644211 00
Q ss_pred ecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCC-CceEEEecCCCCCceEEE-EeCCCC-E
Q psy13635 156 WEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEG-THRKVLVNTDLVEPRAIT-LSPAHG-Y 232 (357)
Q Consensus 156 ~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g-~~~~~~~~~~~~~P~gia-vd~~~g-~ 232 (357)
...+|... + ...-....++++.+ .+ ..++....+.|...++.. ...............+|+ ..+..| .
T Consensus 254 --~~~~p~~~-l----~~h~~~v~sv~~s~-~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~ 324 (524)
T 2j04_B 254 --MCEKPSLT-L----SLADSLITTFDFLS-PT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDT 324 (524)
T ss_dssp --CCCSCSEE-E----CCTTTCEEEEEESS-SS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCC
T ss_pred --eecCceEE-E----EcCCCCEEEEEecC-CC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCe
Confidence 00011000 0 00012345666653 33 455666678899998873 333232333334567774 223345 6
Q ss_pred EEEEeCCCCCCeEEEEecCCCce-EEEee-CCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCC-eEEEecCCCCce
Q psy13635 233 LFWSDWNEKRPKIERSLLNGGER-VLLVK-DRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNN-RRELINENLPHV 309 (357)
Q Consensus 233 Ly~~d~~~~~~~I~~~~~dg~~~-~~~~~-~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~-~~~i~~~~~~~p 309 (357)
++.+-... +.|...++..... ..+.. ........+++.+. +..+++-...+.|...+..... ...+. ......
T Consensus 325 ~laS~S~D--~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~-~~~l~s~~~d~tv~lwd~~~~~~~~~l~-gH~~~V 400 (524)
T 2j04_B 325 VVSTVAVD--GYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQ-IYSYIYSDGASSLRAVPSRAAFAVHPLV-SRETTI 400 (524)
T ss_dssp EEEEEETT--SEEEEECGGGHHHHCEEEEECSCCSCCCEEEETT-TTEEEEECSSSEEEEEETTCTTCCEEEE-ECSSCE
T ss_pred EEEEeccC--CeEEEEECCCCCcccccccccccCcccceEeCCC-cCeEEEeCCCCcEEEEECcccccceeee-cCCCce
Confidence 66665553 4777777654222 12211 11123467888864 4446666666778888865433 23333 234455
Q ss_pred EEEEEE-CCEEEEEeCCCCeEEEEe
Q psy13635 310 FGISLL-GDYVYWTDWQRRSIDRVN 333 (357)
Q Consensus 310 ~gia~~-~~~ly~td~~~~~I~~~~ 333 (357)
.++++. .+..+.+-...++|...+
T Consensus 401 ~sva~Sp~g~~l~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 401 TAIGVSRLHPMVLAGSADGSLIITN 425 (524)
T ss_dssp EEEECCSSCCBCEEEETTTEEECCB
T ss_pred EEEEeCCCCCeEEEEECCCEEEEEe
Confidence 666665 244444444445554444
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=92.14 E-value=6.2 Score=35.20 Aligned_cols=230 Identities=9% Similarity=0.037 Sum_probs=121.7
Q ss_pred CcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCc
Q psy13635 71 EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKK 150 (357)
Q Consensus 71 ~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~ 150 (357)
.....++|++++..|..+. . +.+...+.+.. .............+++.+..+.+.++....+.|...+.....
T Consensus 20 ~~V~~v~fs~dg~~la~g~-~-~~~~iw~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~ 92 (355)
T 3vu4_A 20 NPVTDYEFNQDQSCLILST-L-KSFEIYNVHPV-----AHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQ 92 (355)
T ss_dssp CCCCEEEECTTSSEEEEEC-S-SEEEEEEETTE-----EEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTE
T ss_pred CceEEEEECCCCCEEEEEc-C-CEEEEEecCCc-----ceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCc
Confidence 3567888888666554433 2 34444555433 222222222355667777677776777777889988876443
Q ss_pred eEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCC-c-eEEEecCCCCCceE-EEEe
Q psy13635 151 RKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGT-H-RKVLVNTDLVEPRA-ITLS 227 (357)
Q Consensus 151 ~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~-~-~~~~~~~~~~~P~g-iavd 227 (357)
........ ....+++++ .+.++++. .+.|...++... . ...+ ..|.+ +++.
T Consensus 93 ~~~~~~~~-----------------~~v~~v~~~--~~~~~~~~--~~~i~i~d~~~~~~~~~~~-----~~~~~~~~~s 146 (355)
T 3vu4_A 93 DVSRIKVD-----------------APVKDLFLS--REFIVVSY--GDVISVFKFGNPWKRITDD-----IRFGGVCEFS 146 (355)
T ss_dssp EEEEEECS-----------------SCEEEEEEC--SSEEEEEE--TTEEEEEESSTTCCBSSCC-----EEEEEEEEEE
T ss_pred EEEEEECC-----------------CceEEEEEc--CCEEEEEE--cCEEEEEECCCCceeeEEe-----ccCCceEEEE
Confidence 32222110 123344444 33455443 346777776644 1 1111 11433 3444
Q ss_pred CCCCEEEEEeCCCCCCeEEEEecCCCc---------------e-EEEeeCCCCCceEEEEecCCCEEEEEeCCCCe-EEE
Q psy13635 228 PAHGYLFWSDWNEKRPKIERSLLNGGE---------------R-VLLVKDRLGWPNGITLDVDNEKLYWCDAKTDK-IEM 290 (357)
Q Consensus 228 ~~~g~Ly~~d~~~~~~~I~~~~~dg~~---------------~-~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~-I~~ 290 (357)
+ ..+.++.... .+.|...++.... . ...+...-.....+++++. +++..+-...+. |..
T Consensus 147 ~--~~la~~sg~~-~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~-g~~l~s~s~d~~~v~i 222 (355)
T 3vu4_A 147 N--GLLVYSNEFN-LGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRK-SDMVATCSQDGTIIRV 222 (355)
T ss_dssp T--TEEEEEESSC-TTCEEEEECCC------------------CCEEECCCSSCEEEEEECTT-SSEEEEEETTCSEEEE
T ss_pred c--cEEEEeCCCc-CcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCC-CCEEEEEeCCCCEEEE
Confidence 3 5555542222 2567777766433 0 1222233455689999864 555555556676 888
Q ss_pred EeCC-CCCeEEEecC-CCCceEEEEEE-CCEEEEEeCCCCeEEEEeCccC
Q psy13635 291 IDFD-GNNRRELINE-NLPHVFGISLL-GDYVYWTDWQRRSIDRVNKITG 337 (357)
Q Consensus 291 ~~~d-G~~~~~i~~~-~~~~p~gia~~-~~~ly~td~~~~~I~~~~~~~g 337 (357)
.+.. |.....+... .......+++. ++....+-...+.|...+..++
T Consensus 223 wd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 223 FKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp EETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred EECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 8886 4444444312 34456778886 3555556566678877776443
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=91.83 E-value=7.2 Score=35.32 Aligned_cols=241 Identities=5% Similarity=-0.130 Sum_probs=119.4
Q ss_pred CCcEEEEEcCCCCcce-Eec----cCCCcEEEEEEEc-------cCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCc
Q psy13635 49 SKDIRIANLSRPLKPV-TII----KDLEEGAAIDYYY-------KKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGL 116 (357)
Q Consensus 49 ~~~i~~~~~~~~~~~~-~~~----~~~~~~~~i~~d~-------~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~ 116 (357)
++.|+..|+....... .+. ..-....+++|.+ .++++..+-..++.|+..++.... ........-
T Consensus 110 d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~---~~~~~~~~~ 186 (393)
T 4gq1_A 110 DNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG---PILAGYPLS 186 (393)
T ss_dssp TSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE---EEEEEEECS
T ss_pred CCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc---eeeeecCCC
Confidence 4568877776532221 111 2345688999976 256788887788888888876553 122333333
Q ss_pred CCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEE-EEecC-CCCcceeeeec-------cCcccccCCceEEEeCCC
Q psy13635 117 ITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKV-LYWED-IDQPRAIASYK-------LPTIEVEHPDGVAVDWVA 187 (357)
Q Consensus 117 ~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~-~~~~~-~~~p~~i~~~~-------~~~~~~~~p~glavD~~~ 187 (357)
..+..+++.|.+.++..+-..++.|...++....... ..... ........... ...........+++....
T Consensus 187 ~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~d 266 (393)
T 4gq1_A 187 SPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSD 266 (393)
T ss_dssp SCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTT
T ss_pred CCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCC
Confidence 5678899998777777777778999999876543211 11000 00000000000 001111234455655445
Q ss_pred CeEEEEeCCCCeEEEEEcCCCceE-EEec-----------------CCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEe
Q psy13635 188 RNLYWTDTGTDRIEVCRLEGTHRK-VLVN-----------------TDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSL 249 (357)
Q Consensus 188 ~~lY~td~~~~~I~~~~~~g~~~~-~~~~-----------------~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~ 249 (357)
+...++-...+.+..-++...... .+.. .......+....+..+.+|.+-... .+.|...+
T Consensus 267 g~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~-Dg~V~lwd 345 (393)
T 4gq1_A 267 GSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQ-HGLIQLIN 345 (393)
T ss_dssp TCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETT-TTEEEEEE
T ss_pred CCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECC-CCEEEEEE
Confidence 555556666666766665432111 1100 0011122233344344445444332 25777777
Q ss_pred cCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCC
Q psy13635 250 LNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDG 295 (357)
Q Consensus 250 ~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG 295 (357)
.............-.....+++.+++..|-.+. .+.+..+.+.|
T Consensus 346 ~~~~~~~~~~~~~~~~V~svafspdG~~LA~as--~~Gv~lvrL~g 389 (393)
T 4gq1_A 346 TYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIAT--EGSVLLTRLMG 389 (393)
T ss_dssp TTCTTCCEEEEECSSCEEEEEECTTSSEEEEEE--SSEEEEEEEGG
T ss_pred CCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEe--CCCeEEEEEeC
Confidence 764433322222223457889987666665554 34455554443
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=91.71 E-value=12 Score=37.45 Aligned_cols=261 Identities=10% Similarity=0.013 Sum_probs=141.2
Q ss_pred CeEEEEEeCCcEEEEEcCCCCcceEecc-CCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEE---eCCc
Q psy13635 41 AQMLLFATSKDIRIANLSRPLKPVTIIK-DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI---TNGL 116 (357)
Q Consensus 41 ~~~l~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~---~~~~ 116 (357)
...|.++....+.++|.... .+..... .......+.. .++.||++... .|++++..... .... ..++
T Consensus 73 ~g~lWigT~~Gl~~yd~~~~-~f~~~~~~~~~~i~~i~~--~~g~lWigt~~--Gl~~~~~~~~~----~~~~~~~~~~l 143 (758)
T 3ott_A 73 NTYLYMGTDNGILVYNYRAD-RYEQPETDFPTDVRTMAL--QGDTLWLGALN--GLYTYQLQSRK----LTSFDTRRNGL 143 (758)
T ss_dssp TTEEEEEETTEEEEEETTTT-EECCCSCCCCSCEEEEEE--ETTEEEEEETT--EEEEEETTTCC----EEEECHHHHCC
T ss_pred CCcEEEEeCCCeEEEeCCCC-EEECcccCCCceEEEEEe--cCCcEEEEcCC--cceeEeCCCCe----EEEeccCCCCc
Confidence 34577777778999997652 2222111 1123444543 36888887543 78888876543 2222 1111
Q ss_pred --CCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEe
Q psy13635 117 --ITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTD 194 (357)
Q Consensus 117 --~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td 194 (357)
.....+..| ..+.||+... +.+.+++......+.+.... . .. ..-.....|..|..++.||+..
T Consensus 144 ~~~~i~~i~~d-~~g~lWigt~--~Gl~~~~~~~~~~~~~~~~~-~--~~--------~~~~~i~~i~~d~~~~~lWigt 209 (758)
T 3ott_A 144 PNNTIYSIIRT-KDNQIYVGTY--NGLCRYIPSNGKFEGIPLPV-H--SS--------QSNLFVNSLLEDTTRQCVWIGT 209 (758)
T ss_dssp SCSCEEEEEEC-TTCCEEEEET--TEEEEEETTTTEEEEECCCC-C--TT--------CSSCCEEEEEEETTTTEEEEEE
T ss_pred CCCeEEEEEEc-CCCCEEEEeC--CCHhhCccCCCceEEecCCC-c--cc--------cccceeEEEEEECCCCEEEEEE
Confidence 345677788 4778888653 46888887654433221110 0 00 0001245678886566677765
Q ss_pred CCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeC-----CC--CCce
Q psy13635 195 TGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKD-----RL--GWPN 267 (357)
Q Consensus 195 ~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~-----~l--~~P~ 267 (357)
. +.+.++++..................|..|. .|.|++.... .+.+.+.+......+... .+ ....
T Consensus 210 ~--~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWigT~~----Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~ 282 (758)
T 3ott_A 210 E--GYLFQYFPSTGQIKQTEAFHNNSIKSLALDG-NGDLLAGTDN----GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIW 282 (758)
T ss_dssp E--EEEEEEETTTTEEEEEEEEEEEEEEEEEECT-TCCEEEEETT----EEEEECCTTSCCEEECCCTTCTTSCSCSCEE
T ss_pred C--CCCeEEcCCCCeEEeccCCCCCeEEEEEEcC-CCCEEEEeCC----ceeEEecCCCcEEEEEcCCCCcCcCCcCeEE
Confidence 3 3588888765433222111112356788885 5888888632 688887765544444321 12 1246
Q ss_pred EEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEec---CC--CCceEEEEEE-CCEEEEEeCCCCeEEEEeCcc
Q psy13635 268 GITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELIN---EN--LPHVFGISLL-GDYVYWTDWQRRSIDRVNKIT 336 (357)
Q Consensus 268 giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~---~~--~~~p~gia~~-~~~ly~td~~~~~I~~~~~~~ 336 (357)
.|..| .++.|++.-.. + +.....+......... .. ......|..+ +|.||+.. . +.+.+++..+
T Consensus 283 ~i~~D-~~g~lWiGT~~-G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt-~-~Gl~~~~~~~ 352 (758)
T 3ott_A 283 NIFAD-QEHNIWLGTDY-G-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGG-A-NGLIRFTDPA 352 (758)
T ss_dssp EEEEC-TTCCEEEEESS-S-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEE-T-TEEEEESCTT
T ss_pred EEEEc-CCCCEEEEeCC-c-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEee-C-Ccceeecccc
Confidence 78888 67888887643 4 5444433322211110 11 1234566666 47788775 3 4677776543
|
| >3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP} | Back alignment and structure |
|---|
Probab=89.46 E-value=19 Score=36.18 Aligned_cols=256 Identities=14% Similarity=0.074 Sum_probs=130.7
Q ss_pred CCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCC------------cCCceeEEEEcC-CCeEEEEe
Q psy13635 69 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNG------------LITPDGLAIDWL-TEKLYWTD 135 (357)
Q Consensus 69 ~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~------------~~~p~glavd~~-~~~ly~td 135 (357)
.-....+|++++.+..++|+....+.|++..-.|.. .+.+... ......|++|+. .+.+|.+.
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~DgG~t----W~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~ 94 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWNAAKWE----WEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQ 94 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTE----EEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEE
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEECCCCCC----eeECccCccccccCCCcccccceeEEEECCCCCCEEEEEe
Confidence 344788999999875444444445678877655543 4444332 234678899974 46778754
Q ss_pred C------CCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCC--ceEEEeCCC-CeEEEEeCCCCeEEEEEcC
Q psy13635 136 S------ETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHP--DGVAVDWVA-RNLYWTDTGTDRIEVCRLE 206 (357)
Q Consensus 136 ~------~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p--~glavD~~~-~~lY~td~~~~~I~~~~~~ 206 (357)
. ..+.|++..=.|..=+.+.. ....+ ....... ..|++++.+ +.+|.... ...|++..-.
T Consensus 95 g~~~~~~~~~~i~~S~DgG~TW~~~~~-~~~~~---------~~~~g~~~~~~l~v~p~~~~~v~a~~~-~~~l~~S~Dg 163 (763)
T 3a0f_A 95 GDYVQWDPWAAFLVSDDRGKTFKQYRS-PVPMG---------ANDMGRNGGERLAVNPHWTDELWFGSR-TQGLWRSTDR 163 (763)
T ss_dssp CSCTTTCSCCEEEEESSTTSSCEEEEC-SSCCC---------TTSTTTTSBCCEEECTTSTTCEEEECS-SSCEEEESST
T ss_pred cccccCCCCceEEEECCCCCCceeccC-CcccC---------ccccCccccceEEECCCCCCEEEEEeC-CCcEEEECCC
Confidence 3 13566654433433233221 10000 0000011 358888764 56776543 3567766544
Q ss_pred CCceEEEecCC-----CCCceEEEEeCCC-CEEEEEeCCCCCCeEEEEecCCCceEEEeeC-------------------
Q psy13635 207 GTHRKVLVNTD-----LVEPRAITLSPAH-GYLFWSDWNEKRPKIERSLLNGGERVLLVKD------------------- 261 (357)
Q Consensus 207 g~~~~~~~~~~-----~~~P~giavd~~~-g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~------------------- 261 (357)
|+.=+.+.... ......|+++|.+ +.+|++.... +.|++..=.|..=+.+...
T Consensus 164 G~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~--g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~p~~~~~ 241 (763)
T 3a0f_A 164 AQTWSRMNQLPDSSTYGIGIISVIFDPKNVGTAYVASHAV--GGLWVTWDGGANWSQVGGQPTQWSDWTKSIVAASGTAI 241 (763)
T ss_dssp TSSCEECTTSCCCSCTTTCEEEEEECSSSTTCEEEEESST--TCEEEESSSSSSCEECTTCCCSCCHHHHHHHHHHCCCC
T ss_pred CcCccccccCcccCCCccceEEEEECCCCCCEEEEEEeCC--CeEEEECCCCCCccccCCCccccccccccccccccccc
Confidence 44322222100 1124577888764 4788887652 1466664334332322110
Q ss_pred --CCCCceEEEEecCCCEEEEEe--------CCCCeEEEEeCCCCCeEEEecC-CCCce---------------EEEEEE
Q psy13635 262 --RLGWPNGITLDVDNEKLYWCD--------AKTDKIEMIDFDGNNRRELINE-NLPHV---------------FGISLL 315 (357)
Q Consensus 262 --~l~~P~giaid~~~~~lY~~d--------~~~~~I~~~~~dG~~~~~i~~~-~~~~p---------------~gia~~ 315 (357)
....|..+++++ ++.||++- ...+.+++.+-.|..=+.+... ..... .+|+++
T Consensus 242 ~~~~~~~~~~~~~~-~g~l~~~~~~~~~~~~~~~g~v~rS~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~gg~~~i~v~ 320 (763)
T 3a0f_A 242 QSSGPLPIKIALGK-NGRLYITYSDAPGPWGVLYGEVWSYDPTNGNWKHITPSREGANTYPAPTGNKKVVPGGWNGISVG 320 (763)
T ss_dssp SSSSCEEEEEEECT-TSCEEEEEESSCSSSCCCCEEEEEEETTTTEEEECCTTSSSSCEESCCCCCTTSCCCEEEEEEEC
T ss_pred cCCCCcceeEEECC-CCcEEEEeccCCCCCCCcceeEEEEeCCCCceEECCCCCCCCccccccccccccccCCceeEEEc
Confidence 112345677764 78899873 1345788876555443332210 00011 356775
Q ss_pred -CCEEEEEeCC---CCeEEEEeCccCceeEEE
Q psy13635 316 -GDYVYWTDWQ---RRSIDRVNKITGNDREVI 343 (357)
Q Consensus 316 -~~~ly~td~~---~~~I~~~~~~~g~~~~~i 343 (357)
.+.+|+.... .+.|++= ...|+.-+.+
T Consensus 321 ~~~~v~~~~~~~~~~~~l~~S-~DgG~tW~~~ 351 (763)
T 3a0f_A 321 NGDTVVVSTLDANGEDSVYLS-RDAGNSWKDL 351 (763)
T ss_dssp STBCEEEEEESCTTSCCEEEE-SBTTSSEEEH
T ss_pred CCCeEEEEecCCCCCCCEEEE-CCCCCCcccC
Confidence 5678876541 1344433 3346655554
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=89.14 E-value=18 Score=35.60 Aligned_cols=64 Identities=11% Similarity=0.065 Sum_probs=37.6
Q ss_pred CCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeC-Cc---------CCceeEEEEcCCCeEEEEeCCCCEEEEEEcC-CCc
Q psy13635 82 KSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN-GL---------ITPDGLAIDWLTEKLYWTDSETNKLEVSSLD-GKK 150 (357)
Q Consensus 82 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~-~~---------~~p~glavd~~~~~ly~td~~~~~I~~~~~~-g~~ 150 (357)
++.||++.. .+.|+.++..... ...+.-.. .. ....+++++ +++||+... .++|..++.. |+.
T Consensus 66 ~g~vyv~~~-~~~v~AlD~~tG~--~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~v~~~-dg~l~alD~~tG~~ 139 (668)
T 1kv9_A 66 DGVIYTSMS-WSRVIAVDAASGK--ELWRYDPEVAKVKARTSCCDAVNRGVALW--GDKVYVGTL-DGRLIALDAKTGKA 139 (668)
T ss_dssp TTEEEEEEG-GGEEEEEETTTCC--EEEEECCCCCGGGGGGCTTCSCCCCCEEE--BTEEEEECT-TSEEEEEETTTCCE
T ss_pred CCEEEEECC-CCeEEEEECCCCh--hceEECCCCCccccccccccCCccceEEE--CCEEEEEcC-CCEEEEEECCCCCE
Confidence 678888764 3567777765442 11222111 00 013567886 788998763 5789999874 554
Q ss_pred e
Q psy13635 151 R 151 (357)
Q Consensus 151 ~ 151 (357)
+
T Consensus 140 ~ 140 (668)
T 1kv9_A 140 I 140 (668)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=83.99 E-value=22 Score=31.32 Aligned_cols=260 Identities=9% Similarity=-0.031 Sum_probs=130.8
Q ss_pred CCeEEEEEeCCcEEEEEcCCCCcceEeccC----CCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCC
Q psy13635 40 AAQMLLFATSKDIRIANLSRPLKPVTIIKD----LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNG 115 (357)
Q Consensus 40 ~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 115 (357)
+...++..+...|.+- .+++...+.+... .....+|.+++ +.+|.+. ..+.|++ +.||.. ..+.+...
T Consensus 46 ~~~~~~~G~~g~i~~s-~DgG~tW~~~~~~~~~~~~~~~~i~~~~--~~~~~~g-~~g~i~~-S~DgG~---tW~~~~~~ 117 (327)
T 2xbg_A 46 RHHGWLVGVNATLMET-RDGGQTWEPRTLVLDHSDYRFNSVSFQG--NEGWIVG-EPPIMLH-TTDGGQ---SWSQIPLD 117 (327)
T ss_dssp SSCEEEEETTTEEEEE-SSTTSSCEECCCCCSCCCCEEEEEEEET--TEEEEEE-ETTEEEE-ESSTTS---SCEECCCC
T ss_pred CCcEEEEcCCCeEEEe-CCCCCCCeECCCCCCCCCccEEEEEecC--CeEEEEE-CCCeEEE-ECCCCC---CceECccc
Confidence 3333334444445543 4444455554321 22467888874 6777663 2356776 556543 13333322
Q ss_pred --c-CCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEE
Q psy13635 116 --L-ITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYW 192 (357)
Q Consensus 116 --~-~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~ 192 (357)
+ ..+.+|++.. .+.+|.+.. .+.|++..=.|..=+.+. .+.. ....++++++ .+.+|.
T Consensus 118 ~~~~~~~~~i~~~~-~~~~~~~~~-~g~v~~S~DgG~tW~~~~-~~~~---------------~~~~~~~~~~-~~~~~~ 178 (327)
T 2xbg_A 118 PKLPGSPRLIKALG-NGSAEMITN-VGAIYRTKDSGKNWQALV-QEAI---------------GVMRNLNRSP-SGEYVA 178 (327)
T ss_dssp TTCSSCEEEEEEEE-TTEEEEEET-TCCEEEESSTTSSEEEEE-CSCC---------------CCEEEEEECT-TSCEEE
T ss_pred cCCCCCeEEEEEEC-CCCEEEEeC-CccEEEEcCCCCCCEEee-cCCC---------------cceEEEEEcC-CCcEEE
Confidence 1 3456777653 567777654 456666433343333332 1110 1235677775 455555
Q ss_pred EeCCCCeEEEEEcC-CCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCC-CC---Cce
Q psy13635 193 TDTGTDRIEVCRLE-GTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDR-LG---WPN 267 (357)
Q Consensus 193 td~~~~~I~~~~~~-g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~-l~---~P~ 267 (357)
... .+.+++..-. |..-+.+....-.....+++++. +.+|.+... +.+++...|+......+... +. ...
T Consensus 179 ~g~-~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~-g~~~~~~~~---G~~~~s~~D~G~tW~~~~~~~~~~~~~~~ 253 (327)
T 2xbg_A 179 VSS-RGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPD-GRLWMIVNG---GKIAFSDPDNSENWGELLSPLRRNSVGFL 253 (327)
T ss_dssp EET-TSSEEEEECTTCSSCEEEECCSSSCEEEEEECTT-SCEEEEETT---TEEEEEETTEEEEECCCBCTTSSCCSCEE
T ss_pred EEC-CCcEEEEeCCCCCceeECCCCCCCccceeEECCC-CCEEEEeCC---ceEEEecCCCCCeeEeccCCcccCCcceE
Confidence 443 3567776544 44333332222345678888864 778777654 46766655533222222111 11 235
Q ss_pred EEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecC-CC-CceEEEEEE-CCEEEEEeCCCCeEEEEeC
Q psy13635 268 GITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINE-NL-PHVFGISLL-GDYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 268 giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~-~~-~~p~gia~~-~~~ly~td~~~~~I~~~~~ 334 (357)
+++.+ .++.+|.+-. .+.+++..-.|..=+.+... .. .....+++. ++.+|.. ...+.|++.+.
T Consensus 254 ~v~~~-~~~~~~~~g~-~g~i~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~-G~~G~i~~~~~ 320 (327)
T 2xbg_A 254 DLAYR-TPNEVWLAGG-AGALLCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFIL-GQKGILLRYVT 320 (327)
T ss_dssp EEEES-SSSCEEEEES-TTCEEEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEE-CSTTEEEEECC
T ss_pred EEEec-CCCEEEEEeC-CCeEEEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEE-cCCceEEEEcC
Confidence 66665 3677877754 45565543334433333211 11 234567664 5555444 45678877764
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=80.92 E-value=43 Score=32.55 Aligned_cols=32 Identities=22% Similarity=0.107 Sum_probs=23.6
Q ss_pred eEEEEcCCCeEEEEeCC---------------CCEEEEEEcCCCceE
Q psy13635 121 GLAIDWLTEKLYWTDSE---------------TNKLEVSSLDGKKRK 152 (357)
Q Consensus 121 glavd~~~~~ly~td~~---------------~~~I~~~~~~g~~~~ 152 (357)
.+++|+..+.||+...+ .+.|..++.+.....
T Consensus 245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~ 291 (599)
T 1w6s_A 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAK 291 (599)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEE
T ss_pred ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCcee
Confidence 47899989999997654 257888888755443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 357 | ||||
| d1npea_ | 263 | b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId | 3e-53 | |
| d1npea_ | 263 | b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId | 3e-06 | |
| d1ijqa1 | 266 | b.68.5.1 (A:377-642) Low density lipoprotein (LDL) | 6e-45 | |
| d1ijqa1 | 266 | b.68.5.1 (A:377-642) Low density lipoprotein (LDL) | 1e-40 | |
| d1ijqa1 | 266 | b.68.5.1 (A:377-642) Low density lipoprotein (LDL) | 6e-11 | |
| d1ijqa1 | 266 | b.68.5.1 (A:377-642) Low density lipoprotein (LDL) | 9e-11 | |
| d1ijqa1 | 266 | b.68.5.1 (A:377-642) Low density lipoprotein (LDL) | 5e-08 | |
| d1v04a_ | 340 | b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PO | 9e-05 | |
| d1rwia_ | 260 | b.68.9.1 (A:) Serine/threonine-protein kinase PknD | 0.002 | |
| d2dg1a1 | 319 | b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus | 0.002 |
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Score = 174 bits (442), Expect = 3e-53
Identities = 77/247 (31%), Positives = 127/247 (51%), Gaps = 19/247 (7%)
Query: 99 TFDGNNVGS--KHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYW 156
+ N + + GLA D + + +YWTD + +SL G + +
Sbjct: 16 PLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR 75
Query: 157 EDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNT 216
+D+ P+G+A+D + R ++WTD+ DRIEV +++GT R+VL +T
Sbjct: 76 QDLG----------------SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT 119
Query: 217 DLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNE 276
LV PR I P G L+W+DWN PKIE S ++G R +L +D LG PNG+T D +
Sbjct: 120 GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSS 179
Query: 277 KLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKIT 336
+L W DA T + E ++ RR+++ E L + F ++ G +Y+TDW+ S+ ++
Sbjct: 180 QLCWVDAGTHRAECLNPAQPGRRKVL-EGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAI 238
Query: 337 GNDREVI 343
+ +
Sbjct: 239 SKEMDTF 245
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.6 bits (107), Expect = 3e-06
Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 2/118 (1%)
Query: 233 LFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMID 292
LF +R +ER+ + E + G+ D ++ +YW D I
Sbjct: 5 LFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRAS 64
Query: 293 FDGNNRRELINENLPHVFGISL--LGDYVYWTDWQRRSIDRVNKITGNDREVIIERSC 348
G +I ++L GI+L LG ++WTD Q I+ R +
Sbjct: 65 LHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLV 122
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 153 bits (386), Expect = 6e-45
Identities = 77/244 (31%), Positives = 127/244 (52%), Gaps = 15/244 (6%)
Query: 106 GSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAI 165
S++ + L L + + ++YW+D + + LD Y I
Sbjct: 19 RSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS----- 73
Query: 166 ASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAIT 225
+++ PDG+AVDW+ N+YWTD+ + V +G RK L + +PRAI
Sbjct: 74 -------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIV 126
Query: 226 LSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKT 285
+ P HG+++W+DW KI++ LNG + LV + + WPNGITLD+ + +LYW D+K
Sbjct: 127 VDPVHGFMYWTDWGTP-AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL 185
Query: 286 DKIEMIDFDGNNRRELI--NENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVI 343
I ID +G NR+ ++ + L H F +++ D V+WTD +I N++TG+D ++
Sbjct: 186 HSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLL 245
Query: 344 IERS 347
E
Sbjct: 246 AENL 249
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 141 bits (357), Expect = 1e-40
Identities = 79/271 (29%), Positives = 121/271 (44%), Gaps = 21/271 (7%)
Query: 44 LLFATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGN 103
L F ++R L R + ++I +L A+D + + W+D MI D
Sbjct: 4 LFFTNRHEVRKMTLDRS-EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRA 62
Query: 104 NVGSKH-NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQP 162
+ S + VI+ + PDGLA+DW+ +YWTDS + V+ G KRK L+ E+ +P
Sbjct: 63 HGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKP 122
Query: 163 RAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTD-RIEVCRLEGTHRKVLVNTDLVEP 221
RAI VD V +YWTD GT +I+ L G LV ++ P
Sbjct: 123 RAIV----------------VDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 166
Query: 222 RAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWC 281
ITL G L+W D K I +NGG R +++D + +L V +K++W
Sbjct: 167 NGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWT 224
Query: 282 DAKTDKIEMIDFDGNNRRELINENLPHVFGI 312
D + I + + L+ ENL +
Sbjct: 225 DIINEAIFSANRLTGSDVNLLAENLLSPEDM 255
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.9 bits (144), Expect = 6e-11
Identities = 34/152 (22%), Positives = 67/152 (44%), Gaps = 11/152 (7%)
Query: 197 TDRIEVCR--LEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNG-- 252
T+R EV + L+ + L+ +L A+ A ++WSD +++ I + L+
Sbjct: 7 TNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQR--MICSTQLDRAH 63
Query: 253 --GERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENL--PH 308
++ + P+G+ +D + +YW D+ + + D G R+ L EN P
Sbjct: 64 GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPR 123
Query: 309 VFGISLLGDYVYWTDWQRRSIDRVNKITGNDR 340
+ + ++YWTDW + + + G D
Sbjct: 124 AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 155
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.6 bits (143), Expect = 9e-11
Identities = 35/175 (20%), Positives = 69/175 (39%), Gaps = 18/175 (10%)
Query: 52 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV 111
+ +A+ + ++ + AI + WTD GT G N +++
Sbjct: 101 VSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKK--GGLNGVDIYSL 158
Query: 112 ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLP 171
+T + P+G+ +D L+ +LYW DS+ + + ++G RK + ++
Sbjct: 159 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA--------- 209
Query: 172 TIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITL 226
HP +AV ++WTD + I L+ +L+ P + L
Sbjct: 210 -----HPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 257
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.5 bits (122), Expect = 5e-08
Identities = 19/168 (11%), Positives = 46/168 (27%), Gaps = 5/168 (2%)
Query: 3 YDDRNFYVHKMMFITNTKWVNYIFLVVHFWYALSHHVAAQMLLFATSKDIRIANLSRPLK 62
D V + + + V M +I
Sbjct: 94 TDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 153
Query: 63 PVTII--KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPD 120
+ + ++++ I + W D IS +G N ++ +
Sbjct: 154 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR---KTILEDEKRLAH 210
Query: 121 GLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASY 168
++ +K++WTD + ++ L E++ P + +
Sbjct: 211 PFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLF 258
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Score = 41.6 bits (97), Expect = 9e-05
Identities = 34/206 (16%), Positives = 68/206 (33%), Gaps = 19/206 (9%)
Query: 117 ITPDGLAI----DWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPT 172
I P+GLA + + ++ K+ + L+ K+ V E I I+S+
Sbjct: 42 ILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHG 101
Query: 173 IEV-EHPDGVAVDWVARNLYWTDTGTDRIEVCRLEG--THRKVLVNTDLVEPRAITLSPA 229
I D V + + + + + E H K + + L I
Sbjct: 102 ISTFIDDDNTVYLLVVNHPG-SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGP 160
Query: 230 HGYLFWSDWNEKRPKIERSLLNGG-----------ERVLLVKDRLGWPNGITLDVDNEKL 278
+ +D P ++ ++ G V +V + + NGI + D + +
Sbjct: 161 EHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYV 220
Query: 279 YWCDAKTDKIEMIDFDGNNRRELINE 304
Y + KI + + N +
Sbjct: 221 YIAELLAHKIHVYEKHANWTLTPLRV 246
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 260 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 37.1 bits (84), Expect = 0.002
Identities = 9/70 (12%), Positives = 21/70 (30%), Gaps = 1/70 (1%)
Query: 230 HGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIE 289
++ + L +L L P + +D D +Y D D++
Sbjct: 190 DEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDR-TVYVADRGNDRVV 248
Query: 290 MIDFDGNNRR 299
+ ++
Sbjct: 249 KLTSLEHHHH 258
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Length = 319 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Score = 37.0 bits (84), Expect = 0.002
Identities = 27/232 (11%), Positives = 67/232 (28%), Gaps = 19/232 (8%)
Query: 112 ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLP 171
I+ + +GL D +L+ D + + + K+ K + P AI +K
Sbjct: 35 ISKKGLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDG 93
Query: 172 TIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHG 231
+ V + ++ D ++ +E ++ + + +
Sbjct: 94 RLFVCYLGD---FKSTGGIFAATENGDNLQDI-IEDLSTAYCIDDMVFDSKGGFYFTDFR 149
Query: 232 YLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMI 291
+ + V + + NGI L D + L+ + +++ I
Sbjct: 150 GYSTNPLGGVYY-----VSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRI 204
Query: 292 DFDGN--------NRRELINENLPHVFGISLLGD-YVYWTDWQRRSIDRVNK 334
+ + + D +Y + + + NK
Sbjct: 205 ALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK 256
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 357 | |||
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 100.0 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.96 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 99.96 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.92 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.91 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.91 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.89 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.88 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.88 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.88 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.81 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.79 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 99.78 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.77 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 99.74 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.66 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.6 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.54 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.41 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.41 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 99.29 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.08 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.05 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 99.02 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.01 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 98.99 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 98.93 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.93 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.89 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.86 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.8 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.76 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.75 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.74 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.73 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.61 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.57 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.56 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.53 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.49 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.46 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.39 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.3 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.22 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 98.19 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.09 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 98.04 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 98.03 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 97.95 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.93 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 97.9 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 97.88 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 97.77 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 97.76 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 97.7 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 97.66 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.63 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 97.56 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 97.5 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 97.49 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.24 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 97.11 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 97.1 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.06 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 97.05 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 96.83 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 95.94 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 95.46 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 95.24 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 94.66 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 94.13 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 92.39 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 92.25 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 92.08 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 90.72 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 88.73 | |
| d2ebsa1 | 427 | Oligoxyloglucan reducing end-specific cellobiohydr | 84.61 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 82.53 | |
| d2ebsa1 | 427 | Oligoxyloglucan reducing end-specific cellobiohydr | 81.77 |
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.8e-42 Score=307.62 Aligned_cols=253 Identities=33% Similarity=0.663 Sum_probs=212.9
Q ss_pred eEEEEEeCCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcc-eeEEEEeCCcCCce
Q psy13635 42 QMLLFATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVG-SKHNVITNGLITPD 120 (357)
Q Consensus 42 ~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-~~~~~~~~~~~~p~ 120 (357)
|||+|++.++|+++++++ .....+++++..+.+|+||+.+++|||+|...+.|+++.++|.... ..+.++..++
T Consensus 2 ~fLl~s~~~~I~~~~l~~-~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~---- 76 (266)
T d1ijqa1 2 AYLFFTNRHEVRKMTLDR-SEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI---- 76 (266)
T ss_dssp CEEEEECBSSEEEEETTS-CCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC----
T ss_pred CEEEEECCCeEEEEECCC-CcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCC----
Confidence 799999999999999998 5666677899999999999999999999999999999999886410 1122222223
Q ss_pred eEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeE
Q psy13635 121 GLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRI 200 (357)
Q Consensus 121 glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I 200 (357)
..|.|||+||.+++|||+|...++|
T Consensus 77 -------------------------------------------------------~~p~glAvD~~~~~lY~~d~~~~~I 101 (266)
T d1ijqa1 77 -------------------------------------------------------QAPDGLAVDWIHSNIYWTDSVLGTV 101 (266)
T ss_dssp -------------------------------------------------------SCCCEEEEETTTTEEEEEETTTTEE
T ss_pred -------------------------------------------------------CCcceEEEeeccceEEEEecCCCEE
Confidence 3566666666666777777666777
Q ss_pred EEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEE
Q psy13635 201 EVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYW 280 (357)
Q Consensus 201 ~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~ 280 (357)
++++++|.....+....+..|.+|++||..|.|||++++.. ++|+|+++||+.++.++...+..|+||++|+.+++|||
T Consensus 102 ~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~-~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw 180 (266)
T d1ijqa1 102 SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP-AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYW 180 (266)
T ss_dssp EEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSS-CEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEE
T ss_pred EeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCC-cceeEeccCCCceecccccccceeeEEEeeccccEEEE
Confidence 77777777776766667789999999999999999998865 79999999999999999888999999999999999999
Q ss_pred EeCCCCeEEEEeCCCCCeEEEecC--CCCceEEEEEECCEEEEEeCCCCeEEEEeCccCceeEEEecccCCceeeee
Q psy13635 281 CDAKTDKIEMIDFDGNNRRELINE--NLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVIIERSCTGVTRRR 355 (357)
Q Consensus 281 ~d~~~~~I~~~~~dG~~~~~i~~~--~~~~p~gia~~~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~i~~ 355 (357)
+|...++|++++++|++++.+... .+.+|.||++++++|||+|+.+++|+++++.+|+..+.+..++..|++|+-
T Consensus 181 ~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~~~g~~~~~~~~~~~~p~~i~v 257 (266)
T d1ijqa1 181 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 257 (266)
T ss_dssp EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEE
T ss_pred ecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEEECCCCeEEEEECCCCcceEEEEcCCCCceEEEE
Confidence 999999999999999988777543 467999999999999999999999999999999999999999999999874
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=8.1e-41 Score=297.43 Aligned_cols=254 Identities=30% Similarity=0.601 Sum_probs=222.6
Q ss_pred EEEEEeCCCCeEEEEEcCCCCcc--eeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCC
Q psy13635 84 MVCWTDHGTEMISCCTFDGNNVG--SKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQ 161 (357)
Q Consensus 84 ~ly~~d~~~~~I~~~~~~g~~~~--~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~ 161 (357)
.|+++.. +.|.++.+++.... .....+..+...+.||++|+.++.|||+|...++|.+++++|+..+++...+
T Consensus 3 fLl~s~~--~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~--- 77 (263)
T d1npea_ 3 HLLFAQT--GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD--- 77 (263)
T ss_dssp EEEEEEE--EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT---
T ss_pred EEEEeCC--CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEec---
Confidence 3566655 48999999987531 1234444555678899999999999999999999999999999888887443
Q ss_pred cceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCC
Q psy13635 162 PRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEK 241 (357)
Q Consensus 162 p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~ 241 (357)
+..|.|||+||.+++|||++...++|++++++|+.++++....+..|.+|++||.+|.|||++++..
T Consensus 78 -------------~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~ 144 (263)
T d1npea_ 78 -------------LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRD 144 (263)
T ss_dssp -------------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSS
T ss_pred -------------cccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCC
Confidence 3579999999999999999999999999999999988888878899999999999999999998854
Q ss_pred CCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEECCEEEE
Q psy13635 242 RPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLGDYVYW 321 (357)
Q Consensus 242 ~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~~~~ly~ 321 (357)
.++|+++++||+.++.++..++..|.||++|+.+++|||+|.+.++|.+++++|..++.++. ++.+|.||++++++|||
T Consensus 145 ~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~-~~~~P~~lav~~~~lYw 223 (263)
T d1npea_ 145 NPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE-GLQYPFAVTSYGKNLYY 223 (263)
T ss_dssp SCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE-CCCSEEEEEEETTEEEE
T ss_pred CcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEEC-CCCCcEEEEEECCEEEE
Confidence 46899999999999999988999999999999999999999999999999999999887764 68899999999999999
Q ss_pred EeCCCCeEEEEeCccCceeEEEe-cccCCceeeeec
Q psy13635 322 TDWQRRSIDRVNKITGNDREVII-ERSCTGVTRRRT 356 (357)
Q Consensus 322 td~~~~~I~~~~~~~g~~~~~i~-~~l~~p~~i~~~ 356 (357)
||+.+++|.++++.+|+..+++. .....|++|+-|
T Consensus 224 td~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~ 259 (263)
T d1npea_ 224 TDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIA 259 (263)
T ss_dssp EETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEE
T ss_pred EECCCCEEEEEECCCCccceEECCCCCCCcceEEEe
Confidence 99999999999998898877665 566789999865
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=8.9e-39 Score=284.18 Aligned_cols=251 Identities=27% Similarity=0.473 Sum_probs=216.5
Q ss_pred eEEEEEeCCcEEEEEcCCCCc-----ceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCc
Q psy13635 42 QMLLFATSKDIRIANLSRPLK-----PVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGL 116 (357)
Q Consensus 42 ~~l~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~ 116 (357)
.||+|++.+.|+++++++... ...+....+.+.|||||+.+++|||+|...+.|++++++|+. .+.++..++
T Consensus 2 ~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~---~~~v~~~~~ 78 (263)
T d1npea_ 2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE---PTTIIRQDL 78 (263)
T ss_dssp EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC---CEEEECTTC
T ss_pred CEEEEeCCCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCC---cEEEEEecc
Confidence 589999999999999987421 123334555688999999999999999999999999999985 466677788
Q ss_pred CCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC
Q psy13635 117 ITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG 196 (357)
Q Consensus 117 ~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~ 196 (357)
..|.+||+||.+++|||+|...++|.+++++|..++++...+ +..|.+|++||.++.|||++.+
T Consensus 79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~----------------l~~p~~l~vdp~~g~ly~t~~~ 142 (263)
T d1npea_ 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG----------------LVNPRGIVTDPVRGNLYWTDWN 142 (263)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS----------------CSSEEEEEEETTTTEEEEEECC
T ss_pred ccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEeccc----------------ccCCcEEEEecccCcEEEeecC
Confidence 999999999999999999999999999999999988876433 4579999999999999999987
Q ss_pred CC--eEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecC
Q psy13635 197 TD--RIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVD 274 (357)
Q Consensus 197 ~~--~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~ 274 (357)
.+ +|++++++|..+..+...++..|.||++|+.+++|||+|.+. ++|++++++|..++.++ .++..|.||+++
T Consensus 143 ~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~--~~I~~~~~~g~~~~~v~-~~~~~P~~lav~-- 217 (263)
T d1npea_ 143 RDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGT--HRAECLNPAQPGRRKVL-EGLQYPFAVTSY-- 217 (263)
T ss_dssp SSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTT--TEEEEEETTEEEEEEEE-ECCCSEEEEEEE--
T ss_pred CCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCC--CEEEEEECCCCCeEEEE-CCCCCcEEEEEE--
Confidence 54 699999999999888888899999999999999999999985 59999999999888776 467899999996
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCC-eEEEecCCCCceEEEEEEC
Q psy13635 275 NEKLYWCDAKTDKIEMIDFDGNN-RRELINENLPHVFGISLLG 316 (357)
Q Consensus 275 ~~~lY~~d~~~~~I~~~~~dG~~-~~~i~~~~~~~p~gia~~~ 316 (357)
+++|||+|+..++|.++++.+.. ...+.......|.||++..
T Consensus 218 ~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~ 260 (263)
T d1npea_ 218 GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL 260 (263)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEeC
Confidence 79999999999999999997544 4445545677899998864
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.96 E-value=1.2e-27 Score=211.63 Aligned_cols=238 Identities=19% Similarity=0.272 Sum_probs=191.7
Q ss_pred CcEEEEEEEccCCEEEEEeCCC-CeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCC
Q psy13635 71 EEGAAIDYYYKKSMVCWTDHGT-EMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGK 149 (357)
Q Consensus 71 ~~~~~i~~d~~~~~ly~~d~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~ 149 (357)
-.|.+|++|+ ++.+|+++... ++|.++..++.. .......++..|.|+++|+ .++|||+|..++.|.+ ..++.
T Consensus 14 ~~P~~vavd~-dG~i~v~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~-~~~~~ 87 (260)
T d1rwia_ 14 LSPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTG---TTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTL-AAGSN 87 (260)
T ss_dssp CCEEEEEECT-TCCEEEEECSSSCEEEEEC----C---EEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEE-CTTCS
T ss_pred CCCCEEEEcC-CCCEEEEEcCCCCEEEEEcCCCce---EEEeccCCccCceEEEEcC-CCCEEEeeeeeceeee-eeecc
Confidence 3799999996 67899998755 678888887764 2333345678999999996 6789999988766654 44444
Q ss_pred ceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCC
Q psy13635 150 KRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPA 229 (357)
Q Consensus 150 ~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~ 229 (357)
...... ...+..|.++++|+ .++|||++...+++.+.+.++..........+..|.+|++++
T Consensus 88 ~~~~~~----------------~~~~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~- 149 (260)
T d1rwia_ 88 NQTVLP----------------FDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN- 149 (260)
T ss_dssp CCEECC----------------CCSCCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECT-
T ss_pred ceeeee----------------eeeeeecccccccc-cceeEeeccccccccccccccceeeeeeecccCCcceeeecC-
Confidence 443321 33456899999995 678999999999999999999877766666789999999998
Q ss_pred CCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCce
Q psy13635 230 HGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHV 309 (357)
Q Consensus 230 ~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p 309 (357)
+|++|+++... .+|.+++.++.....+....+..|.||++| .+++|||+|..+++|.+++.++.....+....+..|
T Consensus 150 ~g~~~v~~~~~--~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d-~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P 226 (260)
T d1rwia_ 150 SGNVYVTDTDN--NRVVKLEAESNNQVVLPFTDITAPWGIAVD-EAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTP 226 (260)
T ss_dssp TCCEEEEEGGG--TEEEEECTTTCCEEECCCSSCCSEEEEEEC-TTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCE
T ss_pred CCCEeeecccc--ccccccccccceeeeeeccccCCCccceee-eeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCe
Confidence 58899999884 599999999988877766778999999999 578999999999999999999887766555678899
Q ss_pred EEEEEE-CCEEEEEeCCCCeEEEEeCc
Q psy13635 310 FGISLL-GDYVYWTDWQRRSIDRVNKI 335 (357)
Q Consensus 310 ~gia~~-~~~ly~td~~~~~I~~~~~~ 335 (357)
.+|+++ +|.|||+|+.+++|.+++..
T Consensus 227 ~~i~~d~~g~l~vad~~~~rI~~i~~~ 253 (260)
T d1rwia_ 227 LAVAVDSDRTVYVADRGNDRVVKLTSL 253 (260)
T ss_dssp EEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred EEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence 999999 58999999999999999873
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2e-26 Score=204.41 Aligned_cols=203 Identities=22% Similarity=0.398 Sum_probs=172.0
Q ss_pred eEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCc
Q psy13635 130 KLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTH 209 (357)
Q Consensus 130 ~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~ 209 (357)
.|++++. +.|.++++++.....++. .+..|.+|++|+.+++|||+|...+.|.+++++|..
T Consensus 3 fLl~s~~--~~I~~~~l~~~~~~~~~~-----------------~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~ 63 (266)
T d1ijqa1 3 YLFFTNR--HEVRKMTLDRSEYTSLIP-----------------NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH 63 (266)
T ss_dssp EEEEECB--SSEEEEETTSCCCEEEEC-----------------SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC----
T ss_pred EEEEECC--CeEEEEECCCCcceeeeC-----------------CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCC
Confidence 3677773 469999999988777653 224678899999999999999999999999998743
Q ss_pred ----eEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCC
Q psy13635 210 ----RKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKT 285 (357)
Q Consensus 210 ----~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~ 285 (357)
.+.+....+..|.|||+|..++.|||+|... ++|++++++|.....++...+..|.+|++|+..+.|||++.+.
T Consensus 64 ~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~--~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~ 141 (266)
T d1ijqa1 64 GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL--GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT 141 (266)
T ss_dssp ----CEEEECSSCSCCCEEEEETTTTEEEEEETTT--TEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS
T ss_pred CCcceEEEEeCCCCCcceEEEeeccceEEEEecCC--CEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCC
Confidence 4556666788999999999999999999885 5999999999999888888899999999999999999999765
Q ss_pred -CeEEEEeCCCCCeEEEecCCCCceEEEEEE--CCEEEEEeCCCCeEEEEeCccCceeEEEecc---cCCceeee
Q psy13635 286 -DKIEMIDFDGNNRRELINENLPHVFGISLL--GDYVYWTDWQRRSIDRVNKITGNDREVIIER---SCTGVTRR 354 (357)
Q Consensus 286 -~~I~~~~~dG~~~~~i~~~~~~~p~gia~~--~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~---l~~p~~i~ 354 (357)
.+|+++++||++++.++.+.+..|.||+++ +++|||+|...++|.+++. +|+.+..+... +..|.+|.
T Consensus 142 ~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~-dG~~~~~~~~~~~~~~~p~~la 215 (266)
T d1ijqa1 142 PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV-NGGNRKTILEDEKRLAHPFSLA 215 (266)
T ss_dssp SCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET-TSCSCEEEEECTTTTSSEEEEE
T ss_pred CcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEEC-CCCCEEEEEeCCCcccccEEEE
Confidence 589999999999998888788999999999 5899999999999999998 78777776543 56787764
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.92 E-value=3.7e-24 Score=189.00 Aligned_cols=237 Identities=22% Similarity=0.285 Sum_probs=182.6
Q ss_pred EEEeecCCCCeEEEEEeC---CcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCccee
Q psy13635 32 WYALSHHVAAQMLLFATS---KDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSK 108 (357)
Q Consensus 32 ~~~~~~~~~~~~l~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~ 108 (357)
+++++..+. ..+++++. ..+.+++..+.............|.++++++ ++.|||+|..++.+. +..++.. .
T Consensus 16 P~~vavd~d-G~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~-~~~~~~~---~ 89 (260)
T d1rwia_ 16 PSGVAVDSA-GNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVT-LAAGSNN---Q 89 (260)
T ss_dssp EEEEEECTT-CCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEE-ECTTCSC---C
T ss_pred CCEEEEcCC-CCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceee-eeeeccc---e
Confidence 455666643 44555542 3467777665433344445677899999997 578999999876654 3444442 1
Q ss_pred EEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCC
Q psy13635 109 HNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVAR 188 (357)
Q Consensus 109 ~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~ 188 (357)
......++..|.++|+|+ .++||++|..++++.+++.++....... ...+..|.+|++|+ .+
T Consensus 90 ~~~~~~~~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~~~~----------------~~~~~~p~~i~~~~-~g 151 (260)
T d1rwia_ 90 TVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLP----------------FTGLNDPDGVAVDN-SG 151 (260)
T ss_dssp EECCCCSCCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCEECC----------------CCSCCSCCEEEECT-TC
T ss_pred eeeeeeeeeecccccccc-cceeEeeccccccccccccccceeeeee----------------ecccCCcceeeecC-CC
Confidence 333345678899999996 7789999999999999999887765543 33456899999996 66
Q ss_pred eEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceE
Q psy13635 189 NLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNG 268 (357)
Q Consensus 189 ~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~g 268 (357)
++|+++...++|.+++.++.....+....+..|.||++|+. |.|||+++.. ++|.++..++.....+...++..|.+
T Consensus 152 ~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~-g~l~vsd~~~--~~i~~~~~~~~~~~~~~~~~~~~P~~ 228 (260)
T d1rwia_ 152 NVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEA-GTVYVTEHNT--NQVVKLLAGSTTSTVLPFTGLNTPLA 228 (260)
T ss_dssp CEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTT-CCEEEEETTT--TEEEEECTTCSCCEECCCCSCCCEEE
T ss_pred CEeeeccccccccccccccceeeeeeccccCCCccceeeee-eeeeeeecCC--CEEEEEeCCCCeEEEEccCCCCCeEE
Confidence 89999999999999999998877776677899999999975 8999999984 59999999988877776677899999
Q ss_pred EEEecCCCEEEEEeCCCCeEEEEeCCCC
Q psy13635 269 ITLDVDNEKLYWCDAKTDKIEMIDFDGN 296 (357)
Q Consensus 269 iaid~~~~~lY~~d~~~~~I~~~~~dG~ 296 (357)
|++| .+++|||+|..+++|.+++..+.
T Consensus 229 i~~d-~~g~l~vad~~~~rI~~i~~~~~ 255 (260)
T d1rwia_ 229 VAVD-SDRTVYVADRGNDRVVKLTSLEH 255 (260)
T ss_dssp EEEC-TTCCEEEEEGGGTEEEEECCCGG
T ss_pred EEEe-CCCCEEEEECCCCEEEEEeCCCC
Confidence 9999 56899999999999999987653
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.91 E-value=1.7e-22 Score=183.19 Aligned_cols=249 Identities=15% Similarity=0.150 Sum_probs=188.9
Q ss_pred cceEeccCCCcEEEEEEEccCCEEEEEeCC-------CCeEEEEEcCCCCcceeEEEEeC-----CcCCceeEEEEcCCC
Q psy13635 62 KPVTIIKDLEEGAAIDYYYKKSMVCWTDHG-------TEMISCCTFDGNNVGSKHNVITN-----GLITPDGLAIDWLTE 129 (357)
Q Consensus 62 ~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~-------~~~I~~~~~~g~~~~~~~~~~~~-----~~~~p~glavd~~~~ 129 (357)
.++.+.+.+..+.|+++|+ +++||+++.. +++|++++.++.. .+.... ....|.|+++|+.++
T Consensus 9 ~~~~v~~~~~g~EGpa~d~-dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~----~~~~~~~~~~~~~g~P~Gl~~~~dg~ 83 (314)
T d1pjxa_ 9 LFTKVTEDIPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGK----KTVICKPEVNGYGGIPAGCQCDRDAN 83 (314)
T ss_dssp CCEEEECCCTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCC----EEEEECCEETTEECCEEEEEECSSSS
T ss_pred ceEEeecCCCCCeEeEEeC-CCCEEEEECccccccccCCEEEEEECCCCc----EEEEECCccccCCCcceeEEEeCCCC
Confidence 6778888999999999997 6789998765 3579999998875 333322 124599999998777
Q ss_pred eEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC-------------
Q psy13635 130 KLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG------------- 196 (357)
Q Consensus 130 ~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~------------- 196 (357)
.||++|.. +.|.+++.+|....++....- ...+..|+++++|+ .|+||++|..
T Consensus 84 ~l~vad~~-~~i~~~~~~g~~~~~~~~~~~------------g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~ 149 (314)
T d1pjxa_ 84 QLFVADMR-LGLLVVQTDGTFEEIAKKDSE------------GRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQ 149 (314)
T ss_dssp EEEEEETT-TEEEEEETTSCEEECCSBCTT------------SCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTS
T ss_pred EEEEEECC-CeEEEEeCCCcEEEEEecccc------------ccccCCCcEEEECC-CCCEEEecCccCcccccccceec
Confidence 88988864 679999999886554322110 22456899999995 6799999864
Q ss_pred --CCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCC----EEEEEeCCCCCCeEEEEecCCCce----EEEee---CCC
Q psy13635 197 --TDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHG----YLFWSDWNEKRPKIERSLLNGGER----VLLVK---DRL 263 (357)
Q Consensus 197 --~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g----~Ly~~d~~~~~~~I~~~~~dg~~~----~~~~~---~~l 263 (357)
.++|++++++|+..... ..+..|+||++++... .||+++... ++|+++++++... +.... ...
T Consensus 150 ~~~G~v~~~~~dg~~~~~~--~~~~~pNGi~~~~d~d~~~~~lyv~d~~~--~~i~~~d~~~~g~~~~~~~~~~~~~~~~ 225 (314)
T d1pjxa_ 150 EKFGSIYCFTTDGQMIQVD--TAFQFPNGIAVRHMNDGRPYQLIVAETPT--KKLWSYDIKGPAKIENKKVWGHIPGTHE 225 (314)
T ss_dssp SSCEEEEEECTTSCEEEEE--EEESSEEEEEEEECTTSCEEEEEEEETTT--TEEEEEEEEETTEEEEEEEEEECCCCSS
T ss_pred cCCceEEEEeecCceeEee--CCcceeeeeEECCCCCcceeEEEEEeecc--cceEEeeccCccccceeeEEEEcccccc
Confidence 23799999999765543 3578899999987643 799999985 5999988764322 22222 224
Q ss_pred CCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEEC--CEEEEEeCCCCeEEEEeC
Q psy13635 264 GWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLG--DYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 264 ~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~~--~~ly~td~~~~~I~~~~~ 334 (357)
..|.||++| .+|+||+++...++|++++++|......+......|.++++.. +.||+|+..+++|++++.
T Consensus 226 ~~pdGiavD-~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~ 297 (314)
T d1pjxa_ 226 GGADGMDFD-EDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp CEEEEEEEB-TTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred ccceeeEEe-cCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEEC
Confidence 569999999 7889999999999999999997655444444567899999963 479999999999999985
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.91 E-value=9.4e-22 Score=175.16 Aligned_cols=239 Identities=15% Similarity=0.184 Sum_probs=190.8
Q ss_pred CCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEe------CCcCCceeEEEEcCCCeEEEE-eCCCCEE
Q psy13635 69 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT------NGLITPDGLAIDWLTEKLYWT-DSETNKL 141 (357)
Q Consensus 69 ~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~------~~~~~p~glavd~~~~~ly~t-d~~~~~I 141 (357)
.+..|.+|++++ ++.||++|..+++|.+++.+|.. ..... .....|.+++++...+..+++ +..+++|
T Consensus 21 ~f~~P~gvavd~-dg~i~VaD~~n~rI~v~d~~G~~----~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i 95 (279)
T d1q7fa_ 21 QFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKEGRF----KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQI 95 (279)
T ss_dssp CBSCEEEEEECT-TCCEEEEEGGGTEEEEECTTSCE----EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEE
T ss_pred eECCccEEEEcC-CCCEEEEECCCCEEEEEeCCCCE----EEEecccCCCcccccccccccccccccccceeccCCcccc
Confidence 477899999997 67899999999999999999873 22221 134579999998777777665 4567799
Q ss_pred EEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEe-cCCCCC
Q psy13635 142 EVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLV-NTDLVE 220 (357)
Q Consensus 142 ~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~-~~~~~~ 220 (357)
.+.+.+|.....+. ...+..|.++++| .++.+|+++...+++.+.+.+|+....+. ...+..
T Consensus 96 ~~~~~~g~~~~~~~----------------~~~~~~p~~~avd-~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~ 158 (279)
T d1q7fa_ 96 QIYNQYGQFVRKFG----------------ATILQHPRGVTVD-NKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEF 158 (279)
T ss_dssp EEECTTSCEEEEEC----------------TTTCSCEEEEEEC-TTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSS
T ss_pred ccccccccceeecC----------------CCcccccceeccc-cCCcEEEEeeccceeeEeccCCceeecccccccccc
Confidence 99999998766552 3345689999999 56789999999999999999998766653 345789
Q ss_pred ceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEee-CCCCCceEEEEecCCCEEEEEeCCC-CeEEEEeCCCCCe
Q psy13635 221 PRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVK-DRLGWPNGITLDVDNEKLYWCDAKT-DKIEMIDFDGNNR 298 (357)
Q Consensus 221 P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~-~~l~~P~giaid~~~~~lY~~d~~~-~~I~~~~~dG~~~ 298 (357)
|.++++|+ +|.+|+++... ++|.+.+.+|.....+.. ..+..|.||++| .+|+||++|... ++|..++.+|+..
T Consensus 159 ~~~i~~d~-~g~i~v~d~~~--~~V~~~d~~G~~~~~~g~~g~~~~P~giavD-~~G~i~Vad~~~~~~v~~f~~~G~~~ 234 (279)
T d1q7fa_ 159 PNGVVVND-KQEIFISDNRA--HCVKVFNYEGQYLRQIGGEGITNYPIGVGIN-SNGEILIADNHNNFNLTIFTQDGQLI 234 (279)
T ss_dssp EEEEEECS-SSEEEEEEGGG--TEEEEEETTCCEEEEESCTTTSCSEEEEEEC-TTCCEEEEECSSSCEEEEECTTSCEE
T ss_pred cceeeecc-ceeEEeeeccc--cceeeeecCCceeeeecccccccCCcccccc-cCCeEEEEECCCCcEEEEECCCCCEE
Confidence 99999996 58999999984 599999999987766643 357889999999 577899999754 5799999999877
Q ss_pred EEEecC-CCCceEEEEEE-CCEEEEEeCCCCeEEEEeC
Q psy13635 299 RELINE-NLPHVFGISLL-GDYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 299 ~~i~~~-~~~~p~gia~~-~~~ly~td~~~~~I~~~~~ 334 (357)
..+... ....|.+|+++ +|.||+++. +++|.++..
T Consensus 235 ~~~~~~~~~~~p~~vav~~dG~l~V~~~-n~~v~~fr~ 271 (279)
T d1q7fa_ 235 SALESKVKHAQCFDVALMDDGSVVLASK-DYRLYIYRY 271 (279)
T ss_dssp EEEEESSCCSCEEEEEEETTTEEEEEET-TTEEEEEEC
T ss_pred EEEeCCCCCCCEeEEEEeCCCcEEEEeC-CCeEEEEEe
Confidence 666542 35689999999 589999995 688888775
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.89 E-value=4.4e-21 Score=174.15 Aligned_cols=211 Identities=13% Similarity=0.171 Sum_probs=163.8
Q ss_pred CcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEe
Q psy13635 115 GLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTD 194 (357)
Q Consensus 115 ~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td 194 (357)
.-...+|+++|. .++|||+|...++|++++++|.......... ...|.||++++ +|+||+++
T Consensus 38 ~~~~lEG~~~D~-~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~----------------~~~p~gla~~~-dG~l~va~ 99 (319)
T d2dg1a1 38 KGLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVSH----------------KANPAAIKIHK-DGRLFVCY 99 (319)
T ss_dssp SCCCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECS----------------SSSEEEEEECT-TSCEEEEE
T ss_pred CCcCcEeCEECC-CCCEEEEECCCCEEEEEECCCCeEEEEEeCC----------------CCCeeEEEECC-CCCEEEEe
Confidence 334569999995 6789999999999999999987655443221 23799999995 67999998
Q ss_pred CC----CCeEEEEEcCCCceEEEecC--CCCCceEEEEeCCCCEEEEEeCCCC----CCeEEEEecCCCceEEEeeCCCC
Q psy13635 195 TG----TDRIEVCRLEGTHRKVLVNT--DLVEPRAITLSPAHGYLFWSDWNEK----RPKIERSLLNGGERVLLVKDRLG 264 (357)
Q Consensus 195 ~~----~~~I~~~~~~g~~~~~~~~~--~~~~P~giavd~~~g~Ly~~d~~~~----~~~I~~~~~dg~~~~~~~~~~l~ 264 (357)
.+ ...|...+.++......... ....|+++++++. |++|++|.... .+.+++++.+|.....+. ..+.
T Consensus 100 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~-G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~-~~~~ 177 (319)
T d2dg1a1 100 LGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSK-GGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNIS 177 (319)
T ss_dssp CTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTT-SCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEES
T ss_pred cCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEec-cceeecccccccccCcceeEEEecccceeEEEe-eccc
Confidence 65 34688888887766555432 3567999999975 89999986532 357999999998766654 4678
Q ss_pred CceEEEEecCCCEEEEEeCCCCeEEEEeCCCC--CeEE------EecCCCCceEEEEEE-CCEEEEEeCCCCeEEEEeCc
Q psy13635 265 WPNGITLDVDNEKLYWCDAKTDKIEMIDFDGN--NRRE------LINENLPHVFGISLL-GDYVYWTDWQRRSIDRVNKI 335 (357)
Q Consensus 265 ~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~--~~~~------i~~~~~~~p~gia~~-~~~ly~td~~~~~I~~~~~~ 335 (357)
.|+||++++.++.||++|...++|++++++.. .... ........|.||++| +|+||++++..++|.++++
T Consensus 178 ~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p- 256 (319)
T d2dg1a1 178 VANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK- 256 (319)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-
T ss_pred eeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-
Confidence 99999999888899999999999999987543 2111 112345679999999 6899999999999999998
Q ss_pred cCceeEEEecc
Q psy13635 336 TGNDREVIIER 346 (357)
Q Consensus 336 ~g~~~~~i~~~ 346 (357)
+|+....|...
T Consensus 257 ~G~~l~~i~~P 267 (319)
T d2dg1a1 257 RGYPIGQILIP 267 (319)
T ss_dssp TSCEEEEEECT
T ss_pred CCcEEEEEeCC
Confidence 79988877544
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.88 E-value=9.9e-21 Score=168.44 Aligned_cols=223 Identities=14% Similarity=0.237 Sum_probs=179.7
Q ss_pred CcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEe
Q psy13635 115 GLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTD 194 (357)
Q Consensus 115 ~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td 194 (357)
.+..|.|||+|+ .++||++|..+++|.+++.+|.....+...+. + ......|.+++++...+..+++.
T Consensus 21 ~f~~P~gvavd~-dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~--~---------~~~~~~p~~~~~~~~~~~~~~~~ 88 (279)
T d1q7fa_ 21 QFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKEGRFKFQFGECGK--R---------DSQLLYPNRVAVVRNSGDIIVTE 88 (279)
T ss_dssp CBSCEEEEEECT-TCCEEEEEGGGTEEEEECTTSCEEEEECCBSS--S---------TTCBSSEEEEEEETTTTEEEEEE
T ss_pred eECCccEEEEcC-CCCEEEEECCCCEEEEEeCCCCEEEEecccCC--C---------cccccccccccccccccccceec
Confidence 478899999996 78899999999999999999987766532221 1 23345899999887777777665
Q ss_pred C-CCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEe-eCCCCCceEEEEe
Q psy13635 195 T-GTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLV-KDRLGWPNGITLD 272 (357)
Q Consensus 195 ~-~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~-~~~l~~P~giaid 272 (357)
. .+++|.+.+.+|.....+....+..|.++++++ +|.+|+++... .++.+.+.+|+....+- ...+..|.++++|
T Consensus 89 ~~~~~~i~~~~~~g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~--~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d 165 (279)
T d1q7fa_ 89 RSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKV--MRVIIFDQNGNVLHKFGCSKHLEFPNGVVVN 165 (279)
T ss_dssp CGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTT--TEEEEECTTSCEEEEEECTTTCSSEEEEEEC
T ss_pred cCCccccccccccccceeecCCCcccccceecccc-CCcEEEEeecc--ceeeEeccCCceeecccccccccccceeeec
Confidence 4 456999999999988877767788999999996 58999999884 59999999998666553 3457889999999
Q ss_pred cCCCEEEEEeCCCCeEEEEeCCCCCeEEEec-CCCCceEEEEEE-CCEEEEEeCCC-CeEEEEeCccCceeEEEeccc--
Q psy13635 273 VDNEKLYWCDAKTDKIEMIDFDGNNRRELIN-ENLPHVFGISLL-GDYVYWTDWQR-RSIDRVNKITGNDREVIIERS-- 347 (357)
Q Consensus 273 ~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~-~~~~~p~gia~~-~~~ly~td~~~-~~I~~~~~~~g~~~~~i~~~l-- 347 (357)
.++++|++|...++|+.++.+|.....+.. ..+.+|.||+++ +|.||++|+.+ ++|.++++ +|+.+..+....
T Consensus 166 -~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~ 243 (279)
T d1q7fa_ 166 -DKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKH 243 (279)
T ss_dssp -SSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCC
T ss_pred -cceeEEeeeccccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCC
Confidence 678999999999999999999988776653 357799999998 58999999765 46888887 899887776543
Q ss_pred CCceeee
Q psy13635 348 CTGVTRR 354 (357)
Q Consensus 348 ~~p~~i~ 354 (357)
..|.+|+
T Consensus 244 ~~p~~va 250 (279)
T d1q7fa_ 244 AQCFDVA 250 (279)
T ss_dssp SCEEEEE
T ss_pred CCEeEEE
Confidence 4677764
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.88 E-value=5.6e-20 Score=166.79 Aligned_cols=239 Identities=10% Similarity=0.092 Sum_probs=179.6
Q ss_pred cEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCC----CCEEEEEEcC
Q psy13635 72 EGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSE----TNKLEVSSLD 147 (357)
Q Consensus 72 ~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~----~~~I~~~~~~ 147 (357)
...|+++|+ +++|||+|...++|+|++.+|.. ...........|.||++++ .++||+++.. ...|...+..
T Consensus 41 ~lEG~~~D~-~G~Ly~~D~~~g~I~ri~p~g~~---~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~ 115 (319)
T d2dg1a1 41 QLEGLNFDR-QGQLFLLDVFEGNIFKINPETKE---IKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATEN 115 (319)
T ss_dssp CEEEEEECT-TSCEEEEETTTCEEEEECTTTCC---EEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTT
T ss_pred CcEeCEECC-CCCEEEEECCCCEEEEEECCCCe---EEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCC
Confidence 457999996 46799999999999999999874 2445556667899999996 6789999854 4578888888
Q ss_pred CCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCC------CeEEEEEcCCCceEEEecCCCCCc
Q psy13635 148 GKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGT------DRIEVCRLEGTHRKVLVNTDLVEP 221 (357)
Q Consensus 148 g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~------~~I~~~~~~g~~~~~~~~~~~~~P 221 (357)
+.....+... ......|+++++|+ .|++|+++... +.+++++++|...+.+.. .+..|
T Consensus 116 ~~~~~~~~~~--------------~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~-~~~~p 179 (319)
T d2dg1a1 116 GDNLQDIIED--------------LSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-NISVA 179 (319)
T ss_dssp SCSCEEEECS--------------SSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-EESSE
T ss_pred CceeeeeccC--------------CCcccCCcceeEEe-ccceeecccccccccCcceeEEEecccceeEEEee-cccee
Confidence 7766555422 22345799999995 66899998763 369999999987666554 57889
Q ss_pred eEEEEeCCCCEEEEEeCCCCCCeEEEEecCCC--ceEE------EeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeC
Q psy13635 222 RAITLSPAHGYLFWSDWNEKRPKIERSLLNGG--ERVL------LVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDF 293 (357)
Q Consensus 222 ~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~--~~~~------~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~ 293 (357)
+||++++.++.||++|... ++|++++++.. .... ........|.||++| .+|+||+++...++|.++++
T Consensus 180 nGia~s~dg~~lyvad~~~--~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD-~~G~l~Va~~~~g~V~~~~p 256 (319)
T d2dg1a1 180 NGIALSTDEKVLWVTETTA--NRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCID-SDDNLYVAMYGQGRVLVFNK 256 (319)
T ss_dssp EEEEECTTSSEEEEEEGGG--TEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEB-TTCCEEEEEETTTEEEEECT
T ss_pred eeeeeccccceEEEecccC--CceEEEEEcCCCceeccccceeeeccCCccceeeeeEc-CCCCEEEEEcCCCEEEEECC
Confidence 9999999888999999985 59999987643 2211 112345679999999 68899999999999999999
Q ss_pred CCCCeEEEecC-----CCCceEEEEEE--CCEEEEEeC-----CCCeEEEEeC
Q psy13635 294 DGNNRRELINE-----NLPHVFGISLL--GDYVYWTDW-----QRRSIDRVNK 334 (357)
Q Consensus 294 dG~~~~~i~~~-----~~~~p~gia~~--~~~ly~td~-----~~~~I~~~~~ 334 (357)
+|....++... ....+..+++. ...+|++.. ..+.|++++.
T Consensus 257 ~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~ 309 (319)
T d2dg1a1 257 RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG 309 (319)
T ss_dssp TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeC
Confidence 99877666432 23345667765 356777742 3466888775
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.88 E-value=7e-21 Score=172.42 Aligned_cols=229 Identities=16% Similarity=0.171 Sum_probs=173.2
Q ss_pred EEEEeCCcCCceeEEEEcCCCeEEEEeCC-------CCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceE
Q psy13635 109 HNVITNGLITPDGLAIDWLTEKLYWTDSE-------TNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGV 181 (357)
Q Consensus 109 ~~~~~~~~~~p~glavd~~~~~ly~td~~-------~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~gl 181 (357)
.+.+.+++..|+|+++|+ .++||+++.. +++|.++++++.....+..... ......|.||
T Consensus 10 ~~~v~~~~~g~EGpa~d~-dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~------------~~~~g~P~Gl 76 (314)
T d1pjxa_ 10 FTKVTEDIPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEV------------NGYGGIPAGC 76 (314)
T ss_dssp CEEEECCCTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEE------------TTEECCEEEE
T ss_pred eEEeecCCCCCeEeEEeC-CCCEEEEECccccccccCCEEEEEECCCCcEEEEECCcc------------ccCCCcceeE
Confidence 667889999999999996 7889999865 4689999998877655542211 1122469999
Q ss_pred EEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecC----CCCCceEEEEeCCCCEEEEEeCCCC-------------CCe
Q psy13635 182 AVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNT----DLVEPRAITLSPAHGYLFWSDWNEK-------------RPK 244 (357)
Q Consensus 182 avD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~----~~~~P~giavd~~~g~Ly~~d~~~~-------------~~~ 244 (357)
++|+.++.||+++.. +.|.+++++|.....+... .+..|+++++|+. |.||++|.... .++
T Consensus 77 ~~~~dg~~l~vad~~-~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~-G~lyvtd~~~~~~~~~~~~~~~~~~G~ 154 (314)
T d1pjxa_ 77 QCDRDANQLFVADMR-LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYE-GNLWITAPAGEVAPADYTRSMQEKFGS 154 (314)
T ss_dssp EECSSSSEEEEEETT-TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTT-SCEEEEECBCBCTTSCCCBTTSSSCEE
T ss_pred EEeCCCCEEEEEECC-CeEEEEeCCCcEEEEEeccccccccCCCcEEEECCC-CCEEEecCccCcccccccceeccCCce
Confidence 999888889999875 6799999999865544332 2457999999975 99999985421 357
Q ss_pred EEEEecCCCceEEEeeCCCCCceEEEEecCCC----EEEEEeCCCCeEEEEeCCCCCe----EEEec---CCCCceEEEE
Q psy13635 245 IERSLLNGGERVLLVKDRLGWPNGITLDVDNE----KLYWCDAKTDKIEMIDFDGNNR----RELIN---ENLPHVFGIS 313 (357)
Q Consensus 245 I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~----~lY~~d~~~~~I~~~~~dG~~~----~~i~~---~~~~~p~gia 313 (357)
|++++.+|...... ..+..|+||++++.++ .||++|..+++|+++++++... +.+.. .....|.||+
T Consensus 155 v~~~~~dg~~~~~~--~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGia 232 (314)
T d1pjxa_ 155 IYCFTTDGQMIQVD--TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMD 232 (314)
T ss_dssp EEEECTTSCEEEEE--EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEE
T ss_pred EEEEeecCceeEee--CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeE
Confidence 99999998754433 5578899999986554 7999999999999998754322 21211 2345799999
Q ss_pred EE-CCEEEEEeCCCCeEEEEeCccCceeEEEecccCCceeee
Q psy13635 314 LL-GDYVYWTDWQRRSIDRVNKITGNDREVIIERSCTGVTRR 354 (357)
Q Consensus 314 ~~-~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~i~ 354 (357)
++ +|+||++++..++|+++++.+|+....+..+...|..+.
T Consensus 233 vD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~a 274 (314)
T d1pjxa_ 233 FDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLH 274 (314)
T ss_dssp EBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEE
T ss_pred EecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEE
Confidence 99 699999999999999999866777777766666776654
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.81 E-value=7.2e-18 Score=151.35 Aligned_cols=229 Identities=12% Similarity=0.038 Sum_probs=171.5
Q ss_pred CCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCC
Q psy13635 69 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG 148 (357)
Q Consensus 69 ~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g 148 (357)
.-..+.++++++ +++||++|...++|++++.+|. ..........|.++++++ +++||+++...+.+.++..++
T Consensus 26 ~~~~~e~iAv~p-dG~l~vt~~~~~~I~~i~p~g~-----~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~ 98 (302)
T d2p4oa1 26 VNTFLENLASAP-DGTIFVTNHEVGEIVSITPDGN-----QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVK 98 (302)
T ss_dssp TTCCEEEEEECT-TSCEEEEETTTTEEEEECTTCC-----EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEEC
T ss_pred CCCCcCCEEECC-CCCEEEEeCCCCEEEEEeCCCC-----EEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEecc
Confidence 334688999998 5789999999999999999987 444445557899999996 677999998888887776654
Q ss_pred Cce--EEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEec----------C
Q psy13635 149 KKR--KVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVN----------T 216 (357)
Q Consensus 149 ~~~--~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~----------~ 216 (357)
... ..+.. ......|+++++| .++++|+++...+.|++.++++........ .
T Consensus 99 ~~~~~~~~~~---------------~~~~~~~n~i~~~-~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (302)
T d2p4oa1 99 SDGTVETLLT---------------LPDAIFLNGITPL-SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSES 162 (302)
T ss_dssp TTSCEEEEEE---------------CTTCSCEEEEEES-SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTC
T ss_pred cccceeeccc---------------cCCccccceeEEc-cCCCEEeeccccccceeeeccCCcceeEecCCccceeeccC
Confidence 322 22221 1223478999999 567999999999999999988765544332 1
Q ss_pred CCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEE--eeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCC
Q psy13635 217 DLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLL--VKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFD 294 (357)
Q Consensus 217 ~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~--~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~d 294 (357)
....|+|++.+ .+.+|+++... ++|++++.++...... .......|.|+++| .+|+||+++...++|.+++++
T Consensus 163 ~~~~~ngi~~~--~~~l~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d-~dG~l~va~~~~~~V~~i~p~ 237 (302)
T d2p4oa1 163 VFPAANGLKRF--GNFLYVSNTEK--MLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFD-VEGNLYGATHIYNSVVRIAPD 237 (302)
T ss_dssp CSCSEEEEEEE--TTEEEEEETTT--TEEEEEEBCTTSCBCCCEEEEESCCCSSEEEB-TTCCEEEECBTTCCEEEECTT
T ss_pred ccccccccccc--CCceeeecCCC--CeEEeccccccccccccccccCCCCCcceEEC-CCCCEEEEEcCCCcEEEECCC
Confidence 34578899988 47999999985 5999999886533211 11234679999999 678899999999999999999
Q ss_pred CCCeEEEe-cCCCCceEEEEEE-----CCEEEEEeCC
Q psy13635 295 GNNRRELI-NENLPHVFGISLL-----GDYVYWTDWQ 325 (357)
Q Consensus 295 G~~~~~i~-~~~~~~p~gia~~-----~~~ly~td~~ 325 (357)
|....... ...+..|.++++. ++.||++...
T Consensus 238 G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 238 RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence 87543222 2357789999994 3679998654
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.79 E-value=5.2e-15 Score=130.10 Aligned_cols=284 Identities=17% Similarity=0.161 Sum_probs=209.9
Q ss_pred eEEEEEe--CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCc
Q psy13635 42 QMLLFAT--SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITP 119 (357)
Q Consensus 42 ~~l~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p 119 (357)
.|+|+++ .+.|..+|+.+. +....++....|.++++++++.+||+++..++.|..+++.... ....+ .....|
T Consensus 2 ~~~yV~~~~~~~v~v~D~~t~-~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~---~~~~~-~~~~~~ 76 (301)
T d1l0qa2 2 TFAYIANSESDNISVIDVTSN-KVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN---VIATV-PAGSSP 76 (301)
T ss_dssp EEEEEEETTTTEEEEEETTTT-EEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE---EEEEE-ECSSSE
T ss_pred eEEEEEECCCCEEEEEECCCC-eEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc---eeeee-eccccc
Confidence 3566665 346999998763 4444455556899999999999999999999999999998763 22233 334579
Q ss_pred eeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCe
Q psy13635 120 DGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDR 199 (357)
Q Consensus 120 ~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~ 199 (357)
.++++++.++.++++....+.+...+.........+... ..|..+++++.+..++++......
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~dg~~~~~~~~~~~~ 139 (301)
T d1l0qa2 77 QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-----------------KSPLGLALSPDGKKLYVTNNGDKT 139 (301)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-----------------SSEEEEEECTTSSEEEEEETTTTE
T ss_pred cccccccccccccccccccceeeecccccceeeeecccc-----------------ccceEEEeecCCCeeeeeeccccc
Confidence 999999988889999998899999888765443333211 357788899888899999888778
Q ss_pred EEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEE
Q psy13635 200 IEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLY 279 (357)
Q Consensus 200 I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY 279 (357)
+...+........... ....|..+++++..+.+|++.... ..+............... ....|.++++++.+..+|
T Consensus 140 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~ 215 (301)
T d1l0qa2 140 VSVINTVTKAVINTVS-VGRSPKGIAVTPDGTKVYVANFDS--MSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAY 215 (301)
T ss_dssp EEEEETTTTEEEEEEE-CCSSEEEEEECTTSSEEEEEETTT--TEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEE
T ss_pred eeeeeccccceeeecc-cCCCceEEEeeccccceeeecccc--cccccccccceeeeeccc-ccCCcceeeccccccccc
Confidence 8888776554443333 446799999999989999998874 366666666554444433 336799999999999999
Q ss_pred EEeC--CCCeEEEEeCCCCCeEEEecCCCCceEEEEEE--CCEEEEEeCCCCeEEEEeCccCceeEEEecccCCceee
Q psy13635 280 WCDA--KTDKIEMIDFDGNNRRELINENLPHVFGISLL--GDYVYWTDWQRRSIDRVNKITGNDREVIIERSCTGVTR 353 (357)
Q Consensus 280 ~~d~--~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~--~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~i 353 (357)
++.. ..+.|..++.........+. ....|.++++. +.+||++.+..++|..++..+|+....+.-+ ..|.++
T Consensus 216 v~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~vg-~~P~~~ 291 (301)
T d1l0qa2 216 VTNVDKYFNTVSMIDTGTNKITARIP-VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVG-KNPYAS 291 (301)
T ss_dssp EEEECSSCCEEEEEETTTTEEEEEEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEECC
T ss_pred cccccceeeeeeeeecCCCeEEEEEc-CCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeCC-CCCcEe
Confidence 8764 44689999876544332222 34689999996 4689999999999999998899988877654 356654
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.78 E-value=1.6e-16 Score=142.13 Aligned_cols=233 Identities=12% Similarity=0.087 Sum_probs=172.6
Q ss_pred EEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEE
Q psy13635 74 AAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKV 153 (357)
Q Consensus 74 ~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~ 153 (357)
.|..+|+.++.|||+|...++|+|.++++.. .++...+ ..|.+++.+. .+.|+++.. +.|.++++++...+.
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~----~~~~~~~-~~~~~i~~~~-dg~l~va~~--~gl~~~d~~tg~~~~ 92 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGR----KTVHALP-FMGSALAKIS-DSKQLIASD--DGLFLRDTATGVLTL 92 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTE----EEEEECS-SCEEEEEEEE-TTEEEEEET--TEEEEEETTTCCEEE
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCe----EEEEECC-CCcEEEEEec-CCCEEEEEe--CccEEeecccceeeE
Confidence 5677999999999999999999999999874 3433322 3688999985 678888763 579999988776666
Q ss_pred EEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCC------CeEEEEEcCCCceEEEecCCCCCceEEEEe
Q psy13635 154 LYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGT------DRIEVCRLEGTHRKVLVNTDLVEPRAITLS 227 (357)
Q Consensus 154 ~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~------~~I~~~~~~g~~~~~~~~~~~~~P~giavd 227 (357)
+..... ......|+++++|+ .|++|+++... +.+++.. +|+... +. ..+..|+|++++
T Consensus 93 l~~~~~------------~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~-~g~~~~-~~-~~~~~~Ng~~~s 156 (295)
T d2ghsa1 93 HAELES------------DLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA-KGKVTK-LF-ADISIPNSICFS 156 (295)
T ss_dssp EECSST------------TCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE-TTEEEE-EE-EEESSEEEEEEC
T ss_pred Eeeeec------------CCCcccceeeEECC-CCCEEEEeccccccccceeEeeec-CCcEEE-Ee-eccCCcceeeec
Confidence 543221 12334789999995 66899987532 2455554 454333 33 356789999999
Q ss_pred CCCCEEEEEeCCCCCCeEEEEecCCCc------eEEEee--CCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeE
Q psy13635 228 PAHGYLFWSDWNEKRPKIERSLLNGGE------RVLLVK--DRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRR 299 (357)
Q Consensus 228 ~~~g~Ly~~d~~~~~~~I~~~~~dg~~------~~~~~~--~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~ 299 (357)
+....+||+|+.. ++|++.+++... ...... .....|.|+++| .+|+||++....++|.+++++|....
T Consensus 157 ~d~~~l~~~dt~~--~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD-~~GnlWva~~~~g~V~~~dp~G~~~~ 233 (295)
T d2ghsa1 157 PDGTTGYFVDTKV--NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCD-AEGHIWNARWGEGAVDRYDTDGNHIA 233 (295)
T ss_dssp TTSCEEEEEETTT--CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEEC-TTSCEEEEEETTTEEEEECTTCCEEE
T ss_pred CCCceEEEeeccc--ceeeEeeecccccccccceEEEeccCcccccccceEEc-CCCCEEeeeeCCCceEEecCCCcEee
Confidence 9988999999985 599999987532 222222 234579999999 78899999999999999999998776
Q ss_pred EEecCCCCceEEEEEEC---CEEEEEeCC-------------CCeEEEEeC
Q psy13635 300 ELINENLPHVFGISLLG---DYVYWTDWQ-------------RRSIDRVNK 334 (357)
Q Consensus 300 ~i~~~~~~~p~gia~~~---~~ly~td~~-------------~~~I~~~~~ 334 (357)
.+.. ...+|..+++.+ +.||+|... +|.|+++..
T Consensus 234 ~i~l-P~~~~T~~~FGG~d~~~LyvTta~~~~~~~~~~~~p~~G~l~~~~~ 283 (295)
T d2ghsa1 234 RYEV-PGKQTTCPAFIGPDASRLLVTSAREHLDDDAITANPQHGLTFELGI 283 (295)
T ss_dssp EEEC-SCSBEEEEEEESTTSCEEEEEEBCTTCCHHHHHHCTTTTCEEECSS
T ss_pred EecC-CCCceEEEEEeCCCCCEEEEEECCcCCChhHhccCCCCceEEEEcC
Confidence 6543 456899999963 789999754 467877754
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.77 E-value=7.7e-17 Score=144.49 Aligned_cols=212 Identities=15% Similarity=0.080 Sum_probs=160.2
Q ss_pred CCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC
Q psy13635 117 ITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG 196 (357)
Q Consensus 117 ~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~ 196 (357)
..|+++|+++ +++||++|...++|++++.+|....... . ...|.++++++ +|+||+++..
T Consensus 28 ~~~e~iAv~p-dG~l~vt~~~~~~I~~i~p~g~~~~~~~-~-----------------~~~~~gla~~~-dG~l~v~~~~ 87 (302)
T d2p4oa1 28 TFLENLASAP-DGTIFVTNHEVGEIVSITPDGNQQIHAT-V-----------------EGKVSGLAFTS-NGDLVATGWN 87 (302)
T ss_dssp CCEEEEEECT-TSCEEEEETTTTEEEEECTTCCEEEEEE-C-----------------SSEEEEEEECT-TSCEEEEEEC
T ss_pred CCcCCEEECC-CCCEEEEeCCCCEEEEEeCCCCEEEEEc-C-----------------CCCcceEEEcC-CCCeEEEecC
Confidence 3589999996 6789999999999999999998554322 1 13689999995 5689999988
Q ss_pred CCeEEEEEcCC---CceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeC----------CC
Q psy13635 197 TDRIEVCRLEG---THRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKD----------RL 263 (357)
Q Consensus 197 ~~~I~~~~~~g---~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~----------~l 263 (357)
.+.+.++++++ .............|+++++++. |++|+++... ..+++.+.++......... ..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~-g~~~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (302)
T d2p4oa1 88 ADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSD-TQYLTADSYR--GAIWLIDVVQPSGSIWLEHPMLARSNSESVF 164 (302)
T ss_dssp TTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSS-SEEEEEETTT--TEEEEEETTTTEEEEEEECGGGSCSSTTCCS
T ss_pred CceEEEEEecccccceeeccccCCccccceeEEccC-CCEEeecccc--ccceeeeccCCcceeEecCCccceeeccCcc
Confidence 88877776654 3333333345678999999974 8999999884 5999999988765544322 34
Q ss_pred CCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeE---EEecCCCCceEEEEEE-CCEEEEEeCCCCeEEEEeCccCce
Q psy13635 264 GWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRR---ELINENLPHVFGISLL-GDYVYWTDWQRRSIDRVNKITGND 339 (357)
Q Consensus 264 ~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~---~i~~~~~~~p~gia~~-~~~ly~td~~~~~I~~~~~~~g~~ 339 (357)
..|+||+.| ++.+|+++...++|++++.++.... ... .....|.||+++ +|.||+++...++|.++++ +|+.
T Consensus 165 ~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p-~G~~ 240 (302)
T d2p4oa1 165 PAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIF-VEQTNIDDFAFDVEGNLYGATHIYNSVVRIAP-DRST 240 (302)
T ss_dssp CSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEE-EESCCCSSEEEBTTCCEEEECBTTCCEEEECT-TCCE
T ss_pred ccccccccc--CCceeeecCCCCeEEeccccccccccccccc-cCCCCCcceEECCCCCEEEEEcCCCcEEEECC-CCCE
Confidence 568899886 6899999999999999998765321 111 135679999998 6899999999999999998 6765
Q ss_pred eEEE--ecccCCceeeee
Q psy13635 340 REVI--IERSCTGVTRRR 355 (357)
Q Consensus 340 ~~~i--~~~l~~p~~i~~ 355 (357)
..+. ..++..|..+..
T Consensus 241 ~~~~~~~~~~~~pt~vaf 258 (302)
T d2p4oa1 241 TIIAQAEQGVIGSTAVAF 258 (302)
T ss_dssp EEEECGGGTCTTEEEEEE
T ss_pred EEEEecCCCCCCceEEEE
Confidence 4443 346667766543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.74 E-value=5.1e-16 Score=138.72 Aligned_cols=210 Identities=14% Similarity=0.154 Sum_probs=159.1
Q ss_pred CceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCC
Q psy13635 118 TPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGT 197 (357)
Q Consensus 118 ~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~ 197 (357)
--+|...|+.++.|||+|..+++|+++++++...+++... ..|.+++.+ .++.|+++..
T Consensus 19 LgEgp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~------------------~~~~~i~~~-~dg~l~va~~-- 77 (295)
T d2ghsa1 19 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALP------------------FMGSALAKI-SDSKQLIASD-- 77 (295)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECS------------------SCEEEEEEE-ETTEEEEEET--
T ss_pred eeeCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEECC------------------CCcEEEEEe-cCCCEEEEEe--
Confidence 3489999999999999999999999999988766554211 257788888 4678888865
Q ss_pred CeEEEEEcCCCceEEEecC----CCCCceEEEEeCCCCEEEEEeCCCC----CCeEEEEecCCCceEEEeeCCCCCceEE
Q psy13635 198 DRIEVCRLEGTHRKVLVNT----DLVEPRAITLSPAHGYLFWSDWNEK----RPKIERSLLNGGERVLLVKDRLGWPNGI 269 (357)
Q Consensus 198 ~~I~~~~~~g~~~~~~~~~----~~~~P~giavd~~~g~Ly~~d~~~~----~~~I~~~~~dg~~~~~~~~~~l~~P~gi 269 (357)
+.|.++++++...+.+... ....|+++++|+. |++|+++.... .+.+++.. +| ....+. ..+..|+|+
T Consensus 78 ~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~-G~iw~~~~~~~~~~~~g~l~~~~-~g-~~~~~~-~~~~~~Ng~ 153 (295)
T d2ghsa1 78 DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPS-GALWIGTMGRKAETGAGSIYHVA-KG-KVTKLF-ADISIPNSI 153 (295)
T ss_dssp TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTT-SCEEEEEEETTCCTTCEEEEEEE-TT-EEEEEE-EEESSEEEE
T ss_pred CccEEeecccceeeEEeeeecCCCcccceeeEECCC-CCEEEEeccccccccceeEeeec-CC-cEEEEe-eccCCccee
Confidence 5799999987666665432 2346899999985 89999975422 24566654 33 333333 567889999
Q ss_pred EEecCCCEEEEEeCCCCeEEEEeCCCCC------eEEEe--cCCCCceEEEEEE-CCEEEEEeCCCCeEEEEeCccCcee
Q psy13635 270 TLDVDNEKLYWCDAKTDKIEMIDFDGNN------RRELI--NENLPHVFGISLL-GDYVYWTDWQRRSIDRVNKITGNDR 340 (357)
Q Consensus 270 aid~~~~~lY~~d~~~~~I~~~~~dG~~------~~~i~--~~~~~~p~gia~~-~~~ly~td~~~~~I~~~~~~~g~~~ 340 (357)
++++.+..+||+|+..++|+++++|+.. +..+. .+....|.|+++| +|+||++.+..++|.++++ +|+..
T Consensus 154 ~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~ 232 (295)
T d2ghsa1 154 CFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHI 232 (295)
T ss_dssp EECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEE
T ss_pred eecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEe
Confidence 9998888999999999999999987532 22222 1235579999999 6899999999999999998 79998
Q ss_pred EEEecccCCceee
Q psy13635 341 EVIIERSCTGVTR 353 (357)
Q Consensus 341 ~~i~~~l~~p~~i 353 (357)
..+.....+|..+
T Consensus 233 ~~i~lP~~~~T~~ 245 (295)
T d2ghsa1 233 ARYEVPGKQTTCP 245 (295)
T ss_dssp EEEECSCSBEEEE
T ss_pred eEecCCCCceEEE
Confidence 8887766666544
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=6e-13 Score=118.44 Aligned_cols=295 Identities=13% Similarity=0.093 Sum_probs=196.9
Q ss_pred EEEEEe--CCcEEEEEcCCCCcceEe--ccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCC
Q psy13635 43 MLLFAT--SKDIRIANLSRPLKPVTI--IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLIT 118 (357)
Q Consensus 43 ~l~~~~--~~~i~~~~~~~~~~~~~~--~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 118 (357)
-+|+++ .+.|+.++++.....+++ .+....+.+|+++|++..||.+...++.|...+++.................
T Consensus 5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~ 84 (333)
T d1ri6a_ 5 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS 84 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred EEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence 355555 456888888654443333 3556788999999999999999998898888777654311111122234467
Q ss_pred ceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCC
Q psy13635 119 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTD 198 (357)
Q Consensus 119 p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~ 198 (357)
|.++++++.++.||+++...+.|.....+.......... ......|.++++++.+..+|+++....
T Consensus 85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~--------------~~~~~~~~~v~~s~d~~~~~~~~~~~~ 150 (333)
T d1ri6a_ 85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV--------------VEGLDGCHSANISPDNRTLWVPALKQD 150 (333)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE--------------ECCCTTBCCCEECTTSSEEEEEEGGGT
T ss_pred ceEEEEcCCCCEEeecccCCCceeeeccccccceecccc--------------cCCCccceEEEeeecceeeeccccccc
Confidence 999999999999999999888988887766544333221 112246888999999999999999888
Q ss_pred eEEEEEcCCCceEE------EecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCC--CceEE---Eee-----CC
Q psy13635 199 RIEVCRLEGTHRKV------LVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNG--GERVL---LVK-----DR 262 (357)
Q Consensus 199 ~I~~~~~~g~~~~~------~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg--~~~~~---~~~-----~~ 262 (357)
.|...+........ ........|..+++++....+|++..... .......+. ..... +.. ..
T Consensus 151 ~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (333)
T d1ri6a_ 151 RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNS--SVDVWELKDPHGNIECVQTLDMMPENFSD 228 (333)
T ss_dssp EEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTT--EEEEEESSCTTSCCEEEEEEECSCTTCCS
T ss_pred eeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccC--ceEEEeecccccceeeeeeeeeeecCCCc
Confidence 88887765432211 12224568999999999889999987743 544444332 22211 111 13
Q ss_pred CCCceEEEEecCCCEEEEEeCCCCeEEEEeCC--CCCeEEEe-cCCCCceEEEEEE--CCEEEEEeCCCCeE--EEEeCc
Q psy13635 263 LGWPNGITLDVDNEKLYWCDAKTDKIEMIDFD--GNNRRELI-NENLPHVFGISLL--GDYVYWTDWQRRSI--DRVNKI 335 (357)
Q Consensus 263 l~~P~giaid~~~~~lY~~d~~~~~I~~~~~d--G~~~~~i~-~~~~~~p~gia~~--~~~ly~td~~~~~I--~~~~~~ 335 (357)
...|.++++++++.++|.+....+.+..+..+ +....... ......|.++++. +.+||+++...+.| +.++..
T Consensus 229 ~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~ 308 (333)
T d1ri6a_ 229 TRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGE 308 (333)
T ss_dssp CCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETT
T ss_pred cccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECC
Confidence 45688999998888999999888877666554 43332221 1234678899986 57899998877765 456776
Q ss_pred cCceeEE--EecccCCceeee
Q psy13635 336 TGNDREV--IIERSCTGVTRR 354 (357)
Q Consensus 336 ~g~~~~~--i~~~l~~p~~i~ 354 (357)
+|+...+ +..+ ..|+-|.
T Consensus 309 tG~l~~~~~~~~g-~~p~~v~ 328 (333)
T d1ri6a_ 309 QGLLHEKGRYAVG-QGPMWVV 328 (333)
T ss_dssp TTEEEEEEEEECS-SSCCEEE
T ss_pred CCcEEEEEeccCC-CCCcEEE
Confidence 7765433 4433 4577654
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.60 E-value=1.3e-11 Score=107.78 Aligned_cols=256 Identities=15% Similarity=0.089 Sum_probs=186.8
Q ss_pred EEEeecCCCCeEEEEEe--CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeE
Q psy13635 32 WYALSHHVAAQMLLFAT--SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKH 109 (357)
Q Consensus 32 ~~~~~~~~~~~~l~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~ 109 (357)
..+++.++...+|++++ .+.|..+|+.+. +.....+....|.++++++.++.++.+...+..+...+..+.. .
T Consensus 34 p~~va~spdG~~l~v~~~~~~~i~v~d~~t~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 108 (301)
T d1l0qa2 34 PMGAVISPDGTKVYVANAHSNDVSIIDTATN-NVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT----V 108 (301)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE----E
T ss_pred ceEEEEeCCCCEEEEEECCCCEEEEEECCCC-ceeeeeeccccccccccccccccccccccccceeeecccccce----e
Confidence 45567777778888776 356999999763 3444445566899999999999999999988888888887663 3
Q ss_pred EEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCe
Q psy13635 110 NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARN 189 (357)
Q Consensus 110 ~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~ 189 (357)
.........|..+++++.++.++.+....+.+...+............ ...|..+++.+..+.
T Consensus 109 ~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~ 171 (301)
T d1l0qa2 109 AGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-----------------GRSPKGIAVTPDGTK 171 (301)
T ss_dssp EEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-----------------CSSEEEEEECTTSSE
T ss_pred eeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc-----------------CCCceEEEeeccccc
Confidence 333334467899999998899999988888888887765544333221 236888999988999
Q ss_pred EEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEE
Q psy13635 190 LYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGI 269 (357)
Q Consensus 190 lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~gi 269 (357)
+|++......+............... ....|.++++++....+|++........|...+.........+.. ...|.++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~v 249 (301)
T d1l0qa2 172 VYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV-GPDPAGI 249 (301)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC-CSSEEEE
T ss_pred eeeecccccccccccccceeeeeccc-ccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcC-CCCEEEE
Confidence 99999887777777777655444433 346799999999989999987654345898888876554443333 3679999
Q ss_pred EEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEE
Q psy13635 270 TLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGI 312 (357)
Q Consensus 270 aid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gi 312 (357)
++++++.+||++....+.|...|.........+. -...|.++
T Consensus 250 a~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~-vg~~P~~~ 291 (301)
T d1l0qa2 250 AVTPDGKKVYVALSFCNTVSVIDTATNTITATMA-VGKNPYAS 291 (301)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEECC
T ss_pred EEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe-CCCCCcEe
Confidence 9998888999999999999999975443322222 23457654
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.54 E-value=3e-12 Score=117.29 Aligned_cols=261 Identities=11% Similarity=0.015 Sum_probs=163.3
Q ss_pred cCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEe--CCCCEEEEEE
Q psy13635 68 KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTD--SETNKLEVSS 145 (357)
Q Consensus 68 ~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td--~~~~~I~~~~ 145 (357)
+....+..|+++++++.||.++...-..+.++.+++. ........-..|..+++++.++.+|++. ..++.|....
T Consensus 37 ~~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~ 113 (365)
T d1jofa_ 37 PQDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEI---VHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANP 113 (365)
T ss_dssp CTTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEE---EEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEE
T ss_pred cCCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCe---EEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeE
Confidence 3444567799999999999997654444455544442 1111222335799999998888888865 3456666654
Q ss_pred c--CCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEE-----EecCCC
Q psy13635 146 L--DGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKV-----LVNTDL 218 (357)
Q Consensus 146 ~--~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~-----~~~~~~ 218 (357)
. ++......-........+...- .....-.+|.+++++|.+++||+++.+.++|.+++.+...... ......
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g 192 (365)
T d1jofa_ 114 FYKFAGYGNVFSVSETGKLEKNVQN-YEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG 192 (365)
T ss_dssp ESSSCCEEEEEEECTTCCEEEEEEE-EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred ccCCCCcceeEeeeecceecCcccC-cccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCC
Confidence 3 2222222111111111000000 0011223678999999999999999999999888755332111 122234
Q ss_pred CCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEee-------------------CCCCCceEEEEecCCCEEE
Q psy13635 219 VEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVK-------------------DRLGWPNGITLDVDNEKLY 279 (357)
Q Consensus 219 ~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~-------------------~~l~~P~giaid~~~~~lY 279 (357)
..|++++++|....+|++.... ..|...+.+......+.. .....|..|++++++..||
T Consensus 193 ~gPr~i~f~pdg~~~yv~~e~~--~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~ly 270 (365)
T d1jofa_ 193 DHPRWVAMHPTGNYLYALMEAG--NRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF 270 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTT--TEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred CceEEEEECCCCceEEEeccCC--CEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEE
Confidence 6899999999988999999885 489888887654322110 0112467899999999999
Q ss_pred EEeCCCCe-----EEEEeC--CCCCeE--EEec--CCCCceEEEEEE---CCEEEEEeCCCCeEEEEeC
Q psy13635 280 WCDAKTDK-----IEMIDF--DGNNRR--ELIN--ENLPHVFGISLL---GDYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 280 ~~d~~~~~-----I~~~~~--dG~~~~--~i~~--~~~~~p~gia~~---~~~ly~td~~~~~I~~~~~ 334 (357)
++..+.+. |..++. +|.-.+ .+.. ....+|.++++. +.+||+++..++.|..++.
T Consensus 271 vsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~ 339 (365)
T d1jofa_ 271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW 339 (365)
T ss_dssp EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred EEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEE
Confidence 99754333 655554 343221 1111 245689999985 4689999999999887765
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.41 E-value=2.1e-11 Score=111.56 Aligned_cols=256 Identities=16% Similarity=0.050 Sum_probs=159.2
Q ss_pred eecCCCCeEEEEEeCCcEEEEEcCCCCcceE--eccCCCcEEEEEEEccCCEEEEEeC--CCCeEEEEEcCCCCc-----
Q psy13635 35 LSHHVAAQMLLFATSKDIRIANLSRPLKPVT--IIKDLEEGAAIDYYYKKSMVCWTDH--GTEMISCCTFDGNNV----- 105 (357)
Q Consensus 35 ~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~i~~d~~~~~ly~~d~--~~~~I~~~~~~g~~~----- 105 (357)
++.+++...||.++...+..+.++....... .......|..+++++.+..+|++.. .++.++.........
T Consensus 45 la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~ 124 (365)
T d1jofa_ 45 MTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVF 124 (365)
T ss_dssp EEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEE
T ss_pred EEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeE
Confidence 5556677788888877665544433212222 1233446777778877777777654 344555443321110
Q ss_pred -------cee--EEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCccccc
Q psy13635 106 -------GSK--HNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVE 176 (357)
Q Consensus 106 -------~~~--~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~ 176 (357)
.+. .......-..|.++++++.++.+|++|.+.++|.+++.+............. .....
T Consensus 125 ~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~-----------~~~g~ 193 (365)
T d1jofa_ 125 SVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDA-----------PDPGD 193 (365)
T ss_dssp EECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEEC-----------SSTTC
T ss_pred eeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceee-----------cCCCC
Confidence 000 1111122235789999999999999999999999887654332221111000 11234
Q ss_pred CCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEec-------------------CCCCCceEEEEeCCCCEEEEEe
Q psy13635 177 HPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVN-------------------TDLVEPRAITLSPAHGYLFWSD 237 (357)
Q Consensus 177 ~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~-------------------~~~~~P~giavd~~~g~Ly~~d 237 (357)
.|.++++++.++.+|+++...++|.+++.++.....+.. .....|..|+++|.+.+||++.
T Consensus 194 gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsn 273 (365)
T d1jofa_ 194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS 273 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred ceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEc
Confidence 799999999999999999999999999887643221110 0112477899999989999998
Q ss_pred CCCC---CCeEEEEec--CCCceEEE--ee--CCCCCceEEEEec-CCCEEEEEeCCCCeEEEEeCCCCCeEEE
Q psy13635 238 WNEK---RPKIERSLL--NGGERVLL--VK--DRLGWPNGITLDV-DNEKLYWCDAKTDKIEMIDFDGNNRREL 301 (357)
Q Consensus 238 ~~~~---~~~I~~~~~--dg~~~~~~--~~--~~l~~P~giaid~-~~~~lY~~d~~~~~I~~~~~dG~~~~~i 301 (357)
.+.+ ...|..... +|...... .. ....+|.++++++ .+..||+++...+.|..++.++.....+
T Consensus 274 r~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l~~~ 347 (365)
T d1jofa_ 274 RANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFLHRV 347 (365)
T ss_dssp EESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEEEEE
T ss_pred ccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCcCcEE
Confidence 6532 123544444 34322211 11 2356899999986 5677999999999999988777654444
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=2.7e-10 Score=100.78 Aligned_cols=272 Identities=11% Similarity=0.014 Sum_probs=176.6
Q ss_pred EEeecCCCCeEEEEEeC--CcEEEEEcCCCC-cceE--eccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcce
Q psy13635 33 YALSHHVAAQMLLFATS--KDIRIANLSRPL-KPVT--IIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGS 107 (357)
Q Consensus 33 ~~~~~~~~~~~l~~~~~--~~i~~~~~~~~~-~~~~--~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~ 107 (357)
.+++-+++..+|+.+.. +.|..++++... ..+. .......|.++++++++..||+++...+.+.....+.... .
T Consensus 40 ~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~-~ 118 (333)
T d1ri6a_ 40 QPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP-V 118 (333)
T ss_dssp CCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEE-E
T ss_pred eEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccc-e
Confidence 45566777788888874 457777776532 2222 2334557889999999999999999888888777766531 1
Q ss_pred eEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCC
Q psy13635 108 KHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVA 187 (357)
Q Consensus 108 ~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~ 187 (357)
...........|.++++++.++.+|+++.....|...+............... .......|..+++++..
T Consensus 119 ~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----------~~~~g~~p~~i~~~~~~ 188 (333)
T d1ri6a_ 119 GVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEV----------TTVEGAGPRHMVFHPNE 188 (333)
T ss_dssp EEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEE----------ECSTTCCEEEEEECTTS
T ss_pred ecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceee----------eeecCCCccEEEEeccc
Confidence 12233445567899999999999999999888998887655433221111000 01223578899999999
Q ss_pred CeEEEEeCCCCeEEEEEcCCCc--eE---EEec-----CCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEE
Q psy13635 188 RNLYWTDTGTDRIEVCRLEGTH--RK---VLVN-----TDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVL 257 (357)
Q Consensus 188 ~~lY~td~~~~~I~~~~~~g~~--~~---~~~~-----~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~ 257 (357)
..+|++....+.......+... .. .+.. .....|.++++++.+.++|.+........++..+.++.....
T Consensus 189 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (333)
T d1ri6a_ 189 QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSK 268 (333)
T ss_dssp SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEE
T ss_pred eeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEE
Confidence 9999999888776666654322 11 1111 134578899999988889988877432244444444443333
Q ss_pred Ee-eCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCC--CCeEEEec-CCCCceEEEEEE
Q psy13635 258 LV-KDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDG--NNRRELIN-ENLPHVFGISLL 315 (357)
Q Consensus 258 ~~-~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG--~~~~~i~~-~~~~~p~gia~~ 315 (357)
.. ......|.++++++++.+||++....+.|..++.|. ...+.+.. .....|..|++.
T Consensus 269 ~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~~~~~~~~g~~p~~v~~~ 330 (333)
T d1ri6a_ 269 EGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVN 330 (333)
T ss_dssp EEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEEEEE
T ss_pred EEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEEEEEeccCCCCCcEEEEE
Confidence 22 223467999999998888999998888777665443 22222211 124467777653
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=99.29 E-value=7e-10 Score=103.91 Aligned_cols=272 Identities=13% Similarity=0.100 Sum_probs=167.2
Q ss_pred CcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCC------cCCceeEEEEc---CCCeE
Q psy13635 61 LKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNG------LITPDGLAIDW---LTEKL 131 (357)
Q Consensus 61 ~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~------~~~p~glavd~---~~~~l 131 (357)
-+.+.+.+++..|++|++.+ +++||+++...++|++++.++.... ....+... ...--|||+|+ .++.|
T Consensus 17 f~~~~ia~~L~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~-~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~i 94 (450)
T d1crua_ 17 FDKKVILSNLNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVK-TVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYI 94 (450)
T ss_dssp SCEEEEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEE-EEEECTTCCCCTTSSCSEEEEEECTTTTTSCEE
T ss_pred cEEEEEECCCCCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEe-ecccCCccccccCCCCceeeEEeCCCCccCCEE
Confidence 35667778899999999987 6789999988899999987766411 11111111 12235799997 36788
Q ss_pred EEEeC---------C---CCEEEEEEcCCCce-----EEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEe
Q psy13635 132 YWTDS---------E---TNKLEVSSLDGKKR-----KVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTD 194 (357)
Q Consensus 132 y~td~---------~---~~~I~~~~~~g~~~-----~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td 194 (357)
|++-. . ...+.+...++... +.++.. ++....+.-..|++++ .++||++-
T Consensus 95 Yvsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~------------~p~~~~H~gg~l~fgp-DG~LYvs~ 161 (450)
T d1crua_ 95 YISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAG------------LPSSKDHQSGRLVIGP-DQKIYYTI 161 (450)
T ss_dssp EEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEE------------ECCCSSCCEEEEEECT-TSCEEEEE
T ss_pred EEEEecCCCCCcccccccceEEEeeecccccccccceEEEeec------------ccccccccccceeEcC-CCCEEEEe
Confidence 88642 0 11344444443321 111111 1233445667899995 67999985
Q ss_pred CC--------------------------------CCeEEEEEcCCCce----------EEEecCCCCCceEEEEeCCCCE
Q psy13635 195 TG--------------------------------TDRIEVCRLEGTHR----------KVLVNTDLVEPRAITLSPAHGY 232 (357)
Q Consensus 195 ~~--------------------------------~~~I~~~~~~g~~~----------~~~~~~~~~~P~giavd~~~g~ 232 (357)
.. .++|.+++++|+.. ..+...++.+|.+++++| +|.
T Consensus 162 Gd~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~RNp~g~~~~p-~g~ 240 (450)
T d1crua_ 162 GDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTP-NGK 240 (450)
T ss_dssp CCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECT-TSC
T ss_pred cCCCcccccccccccccccCcccccccccccccccCceEEeeccccccccccccccccceEEEeccccccceeecc-cce
Confidence 42 26899999998642 124456889999999998 699
Q ss_pred EEEEeCCCC-CCeEEEEecCC---------Cce---E---------------------------EEee----C-------
Q psy13635 233 LFWSDWNEK-RPKIERSLLNG---------GER---V---------------------------LLVK----D------- 261 (357)
Q Consensus 233 Ly~~d~~~~-~~~I~~~~~dg---------~~~---~---------------------------~~~~----~------- 261 (357)
||.+|.+.. .-.|.++...+ ... . .+.. .
T Consensus 241 l~~~e~G~~~~dEln~i~~G~nYGWP~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 320 (450)
T d1crua_ 241 LLQSEQGPNSDDEINLIVKGGNYGWPNVAGYKDDSGYAYANYSAAANKSIKDLAQNGVKVAAGVPVTKESEWTGKNFVPP 320 (450)
T ss_dssp EEEEEECSSSCEEEEECCTTCBCCTTTCSSSSSCSSCCEECGGGSSCTTCCCCCSTTSSCCTTCCEECGGGCCCSSBCCC
T ss_pred eeeccccccccccccccccccccCCceecCCcCCCCcccCCcccccccccccccccccccccCCCccccccccccccccc
Confidence 999998743 11233332110 000 0 0000 0
Q ss_pred --------------------------CCCCceEEEEe--------cCCCEEEEEeCCCCeEEEEeCCCCCe-----EEEe
Q psy13635 262 --------------------------RLGWPNGITLD--------VDNEKLYWCDAKTDKIEMIDFDGNNR-----RELI 302 (357)
Q Consensus 262 --------------------------~l~~P~giaid--------~~~~~lY~~d~~~~~I~~~~~dG~~~-----~~i~ 302 (357)
..-.|.|+++= .-.+.+++++...+.|.++.++.... ....
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~Psiapsg~~fY~g~~~~fp~~~g~lfvg~l~~~~i~~v~~~~~~~~~~~~~~~~ 400 (450)
T d1crua_ 321 LKTLYTVQDTYNYNDPTCGEMTYICWPTVAPSSAYVYKGGKKAITGWENTLLVPSLKRGVIFRIKLDPTYSTTYDDAVPM 400 (450)
T ss_dssp SEEECCCCTTCCSCCGGGTTCGGGGSSCCCBCCCEECCCCTTCCTTCTTEEEEEBSSSCCEEEEEECTTSSSEEEEEEEE
T ss_pred ccccccccccccccccccCCCceeecccccCccceEecCCcccCcccCCCEEEEECcCCEEEEEEEcCCCceeeEEEEec
Confidence 00135666651 12478999999999999998875432 1123
Q ss_pred cCCCCceEEEEEE-CCE-EEEEeCCCCeEEEEeCccCceeEEEecccCCceeeee
Q psy13635 303 NENLPHVFGISLL-GDY-VYWTDWQRRSIDRVNKITGNDREVIIERSCTGVTRRR 355 (357)
Q Consensus 303 ~~~~~~p~gia~~-~~~-ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~i~~ 355 (357)
......|.+|++. +|. ||+++..+|.|++-+ ++ ++..+.+|..|.+
T Consensus 401 ~~~~~R~rdv~~gpDGs~lyv~~d~~G~i~r~~---~~----~~~~~~~p~~~~~ 448 (450)
T d1crua_ 401 FKSNNRYRDVIASPDGNVLYVLTDTAGNVQKDD---GS----VTNTLENPGSLIK 448 (450)
T ss_dssp SCCSSCEEEEEECTTSSCEEEEECSSCCEECTT---SC----EECCCSSTTCEEE
T ss_pred cCCCCCceEEEECCCCCEEEEEECCCCCEecCC---Cc----eEEEeCCCCeEEE
Confidence 3445689999998 464 899999999988733 32 3344555555544
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.08 E-value=3e-06 Score=75.51 Aligned_cols=290 Identities=8% Similarity=-0.056 Sum_probs=167.7
Q ss_pred cCCCCeEEEEEe------CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCC---------CeEEEEEcC
Q psy13635 37 HHVAAQMLLFAT------SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGT---------EMISCCTFD 101 (357)
Q Consensus 37 ~~~~~~~l~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~---------~~I~~~~~~ 101 (357)
.+++...+++++ ...++.+|....+... .+.. ..+.++++.++...||++.... +.|...+..
T Consensus 28 ~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~-~~~~-~~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~ 105 (373)
T d2madh_ 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILG-HVNG-GFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred cCCCCCEEEEEcccccCCCceEEEEECCCCCEEE-EEeC-CCCccEEEcCCCCEEEEEeecCCcccccccceEEEEEECC
Confidence 344445555543 2358889976643332 2332 2334789999999999986543 456667766
Q ss_pred CCCcceeEEEEeC------CcCCceeEEEEcCCCeEEEEeCC-CCEEEEEEcCCCceEEEEecCCCCcceeeeeccCccc
Q psy13635 102 GNNVGSKHNVITN------GLITPDGLAIDWLTEKLYWTDSE-TNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIE 174 (357)
Q Consensus 102 g~~~~~~~~~~~~------~~~~p~glavd~~~~~ly~td~~-~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~ 174 (357)
.... ...+... ....|.++++.+.++.+|+.... .+.+...+........ .
T Consensus 106 t~~~--~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~--------------------~ 163 (373)
T d2madh_ 106 TFLP--IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQ--------------------L 163 (373)
T ss_pred CCcE--EEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEE--------------------E
Confidence 5531 1111111 12357788888888877776533 3444444443322111 1
Q ss_pred ccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecC------CCCCceEEEEeCCCCEEEEEeCCCCCCeEEEE
Q psy13635 175 VEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNT------DLVEPRAITLSPAHGYLFWSDWNEKRPKIERS 248 (357)
Q Consensus 175 ~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~------~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~ 248 (357)
...|.++++.+.+..+|++....+.+.+.+.++......... ....+..++.++. +.+.+.... +++...
T Consensus 164 ~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~v~~~ 239 (373)
T d2madh_ 164 LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKS-GRIVWPVYS---GKILQA 239 (373)
T ss_pred eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCC-ceEEEecCC---ceEEEE
Confidence 235788888888889999999889998888776544332211 1122334444543 322222222 355555
Q ss_pred ecCCCceEEEeeC------------CCCCceEEEEecCCCEEEEEeC---------CCCeEEEEeCCCCCeEEEecCCCC
Q psy13635 249 LLNGGERVLLVKD------------RLGWPNGITLDVDNEKLYWCDA---------KTDKIEMIDFDGNNRRELINENLP 307 (357)
Q Consensus 249 ~~dg~~~~~~~~~------------~l~~P~giaid~~~~~lY~~d~---------~~~~I~~~~~dG~~~~~i~~~~~~ 307 (357)
+..+.....+... .-..+..+++.+...++|++.. ..+.+..++.........+ ....
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~-~~~~ 318 (373)
T d2madh_ 240 DISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI-SLGH 318 (373)
T ss_pred EcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEe-cCCC
Confidence 5554332222111 1122344566666666666543 3456667776443332222 2345
Q ss_pred ceEEEEEE--CCE-EEEEeCCCCeEEEEeCccCceeEEEecccCCceeeee
Q psy13635 308 HVFGISLL--GDY-VYWTDWQRRSIDRVNKITGNDREVIIERSCTGVTRRR 355 (357)
Q Consensus 308 ~p~gia~~--~~~-ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~i~~ 355 (357)
.|.++++. +.. +|++....+.|+.+|..+|+....+......|..|.-
T Consensus 319 ~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~ 369 (373)
T d2madh_ 319 DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSV 369 (373)
T ss_pred CeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEE
Confidence 68888885 344 6788888899999999999999999877778877653
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.05 E-value=2.7e-06 Score=77.94 Aligned_cols=300 Identities=10% Similarity=0.009 Sum_probs=181.4
Q ss_pred EEEEEe--CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCce
Q psy13635 43 MLLFAT--SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPD 120 (357)
Q Consensus 43 ~l~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~ 120 (357)
.++++. .+.|+.+|+.+.. ....++....|.+++|+|++..||.++. ++.|...+++.... ...........|.
T Consensus 33 ~~~V~~~~dg~v~vwD~~t~~-~~~~l~~g~~~~~vafSPDGk~l~~~~~-d~~v~vwd~~t~~~--~~~~~i~~~~~~~ 108 (426)
T d1hzua2 33 LFSVTLRDAGQIALVDGDSKK-IVKVIDTGYAVHISRMSASGRYLLVIGR-DARIDMIDLWAKEP--TKVAEIKIGIEAR 108 (426)
T ss_dssp EEEEEETTTTEEEEEETTTCS-EEEEEECCSSEEEEEECTTSCEEEEEET-TSEEEEEETTSSSC--EEEEEEECCSEEE
T ss_pred EEEEEEcCCCEEEEEECCCCc-EEEEEeCCCCeeEEEECCCCCEEEEEeC-CCCEEEEEccCCce--eEEEEEeCCCCCc
Confidence 344444 4679999998743 3333444467999999999999988865 46899999886641 1111112334678
Q ss_pred eEEEEc----CCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC
Q psy13635 121 GLAIDW----LTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG 196 (357)
Q Consensus 121 glavd~----~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~ 196 (357)
++++.+ .++.||.+....+.+...+....................+. ..-..+..++..+.+..++++...
T Consensus 109 ~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~s~d~~~~~~~~~~ 183 (426)
T d1hzua2 109 SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTY-----HPEPRVAAIIASHEHPEFIVNVKE 183 (426)
T ss_dssp EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCE-----ESCCCEEEEEECSSSSEEEEEETT
T ss_pred ceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceee-----cCCCceeEEEECCCCCEEEEecCC
Confidence 887763 57789999888889998887766554443222111111110 001133456677778888999998
Q ss_pred CCeEEEEEcCCCc-eEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCce--------------------
Q psy13635 197 TDRIEVCRLEGTH-RKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGER-------------------- 255 (357)
Q Consensus 197 ~~~I~~~~~~g~~-~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~-------------------- 255 (357)
.+.|...+..... ...........|.+++++|...++|.+..... .+...+......
T Consensus 184 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (426)
T d1hzua2 184 TGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSN--KVAVIDSKDRRLSALVDVGKTPHPGRGANFVH 261 (426)
T ss_dssp TTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCS--EEEEEETTTTEEEEEEECSSCCCCSCCEEEEE
T ss_pred CCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeeccc--ceeeeecccccEEEEeccCCcccccceeeeec
Confidence 8888777665432 22222224578999999998888888876643 444443321111
Q ss_pred ----------------EEE------------------eeCCCCCceEEEEecCCCEEEEEeCC------CCeEEEEeCC-
Q psy13635 256 ----------------VLL------------------VKDRLGWPNGITLDVDNEKLYWCDAK------TDKIEMIDFD- 294 (357)
Q Consensus 256 ----------------~~~------------------~~~~l~~P~giaid~~~~~lY~~d~~------~~~I~~~~~d- 294 (357)
..+ +......|.++++.|.+.+|+++... .+.|...+.+
T Consensus 262 ~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t 341 (426)
T d1hzua2 262 PKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKN 341 (426)
T ss_dssp TTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTC
T ss_pred CCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCC
Confidence 001 01112347788888777777664321 2467777764
Q ss_pred CCCeEEEec--------CCCCceEEEEEE--CCEEEEEeCC----CCeEEEEeCccCceeEEEec-ccCCceee
Q psy13635 295 GNNRRELIN--------ENLPHVFGISLL--GDYVYWTDWQ----RRSIDRVNKITGNDREVIIE-RSCTGVTR 353 (357)
Q Consensus 295 G~~~~~i~~--------~~~~~p~gia~~--~~~ly~td~~----~~~I~~~~~~~g~~~~~i~~-~l~~p~~i 353 (357)
|....++.. +.......+++. +.++|++.+. .+.|...|..+++..+.|.. .+..|-|.
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~~~tp~Gk 415 (426)
T d1hzua2 342 LDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPRLITPTGK 415 (426)
T ss_dssp TTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTTCCSEEEE
T ss_pred CCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCCccCCCce
Confidence 443333321 122234455554 5689988653 56799999888888877754 35556554
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.02 E-value=8e-07 Score=79.47 Aligned_cols=243 Identities=11% Similarity=0.057 Sum_probs=143.8
Q ss_pred cEEEEEEEccCCEEEEEeC------------CCCeEEEEEcCCCCcceeEEEEeCC-----cCCceeEEEEcC---CCeE
Q psy13635 72 EGAAIDYYYKKSMVCWTDH------------GTEMISCCTFDGNNVGSKHNVITNG-----LITPDGLAIDWL---TEKL 131 (357)
Q Consensus 72 ~~~~i~~d~~~~~ly~~d~------------~~~~I~~~~~~g~~~~~~~~~~~~~-----~~~p~glavd~~---~~~l 131 (357)
.|..|++++ ++.+|.+.. ..+.|+.++++..........+..+ .-.|.||.+-.. ...|
T Consensus 36 G~EDi~~~~-dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L 114 (340)
T d1v04a_ 36 GSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 114 (340)
T ss_dssp CCCEEEECT-TSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceEEECC-CCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEE
Confidence 355566664 455555532 1367777777654321111111211 147999987321 2258
Q ss_pred EEEeC--CCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCC------------
Q psy13635 132 YWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGT------------ 197 (357)
Q Consensus 132 y~td~--~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~------------ 197 (357)
|+.+. ...+|..+.++....+....... ....+..|+++++. ..+.+|+|+...
T Consensus 115 ~vvnH~~~~~~ieif~~~~~~~~l~~~~~v-----------~~~~~~~pNDv~~~-~~g~fy~Tnd~~~~~~~~~~~e~~ 182 (340)
T d1v04a_ 115 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTI-----------RHKLLPSVNDIVAV-GPEHFYATNDHYFIDPYLKSWEMH 182 (340)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEE-----------CCTTCSSEEEEEEE-ETTEEEEEESCSCCSHHHHHHHHH
T ss_pred EEEeccCCCceeEEEEEeCCCCeEEEEeec-----------CCccccCccceEEe-cCCCEEEecCccCcChhhhhhhHh
Confidence 88875 45677766654222121111111 13345689999999 577899997431
Q ss_pred ---CeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEe--eCCCCCceEEEEe
Q psy13635 198 ---DRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLV--KDRLGWPNGITLD 272 (357)
Q Consensus 198 ---~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~--~~~l~~P~giaid 272 (357)
....++..+++..+++. +++..|+||+++|.+..||++++.. .+|.+..+++....... ..--..|..|.+|
T Consensus 183 ~~~~~g~v~~~~~~~~~~~~-~~l~~pNGI~~s~d~~~lyVa~t~~--~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d 259 (340)
T d1v04a_ 183 LGLAWSFVTYYSPNDVRVVA-EGFDFANGINISPDGKYVYIAELLA--HKIHVYEKHANWTLTPLRVLSFDTLVDNISVD 259 (340)
T ss_dssp TTCCCEEEEEECSSCEEEEE-EEESSEEEEEECTTSSEEEEEEGGG--TEEEEEEECTTSCEEEEEEEECSSEEEEEEEC
T ss_pred hcCCceeEEEEcCCceEEEc-CCCCccceeEECCCCCEEEEEeCCC--CeEEEEEeCCCcccceEEEecCCCCCCccEEe
Confidence 23445555666666655 4678999999999989999999995 59999998876433221 1223569999999
Q ss_pred cCCCEEEEEeCC--------------CCeEEEEeC-CC--CCeEEEecC---CCCceEEEEEECCEEEEEeCCCCeEE
Q psy13635 273 VDNEKLYWCDAK--------------TDKIEMIDF-DG--NNRRELINE---NLPHVFGISLLGDYVYWTDWQRRSID 330 (357)
Q Consensus 273 ~~~~~lY~~d~~--------------~~~I~~~~~-dG--~~~~~i~~~---~~~~p~gia~~~~~ly~td~~~~~I~ 330 (357)
..++.+|++-.. ...+.++.. ++ ...+.+... .+..+......+|+||+.....+.|+
T Consensus 260 ~~~g~lwva~~p~~~~~~~~~~~~~~~s~v~ri~~~~~~~~~v~~~~~~~G~~~~~~T~a~~~~g~L~iGs~~~~~l~ 337 (340)
T d1v04a_ 260 PVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDILSEEPKVTVVYAENGTVLQGSTVAAVYKGKLLIGTVFHKALY 337 (340)
T ss_dssp TTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEECTTSSSCEEEEEEEECSSSSCSEEEEEEETTEEEEEESSSCEEE
T ss_pred cCCCEEEEEECCcccchhhhcccCCCCceeEEEEeccCCCCeEEEEEeCCCcEeeceEEEEEECCEEEEEeeeCCceE
Confidence 778888887421 112455432 22 223333332 23444444456899999887766553
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.01 E-value=5.2e-07 Score=78.73 Aligned_cols=285 Identities=10% Similarity=0.033 Sum_probs=167.3
Q ss_pred EEEEEe-CCcEEEEEcCCCCcceEe-cc-CCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCC----
Q psy13635 43 MLLFAT-SKDIRIANLSRPLKPVTI-IK-DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNG---- 115 (357)
Q Consensus 43 ~l~~~~-~~~i~~~~~~~~~~~~~~-~~-~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~---- 115 (357)
|++.+. .+.|..+|+........+ .+ ....|.++++++++..+|++...++.|..+++..... ...+-...
T Consensus 3 ~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~--~~~~~~~~~~~~ 80 (337)
T d1pbyb_ 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET--LGRIDLSTPEER 80 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE--EEEEECCBTTEE
T ss_pred EEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcE--EEEEecCCCccc
Confidence 344444 467999999763322222 22 3456889999998889999998889999999987641 11221111
Q ss_pred cCCceeEEEEcCCCeEEEEeCC-----------CCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEe
Q psy13635 116 LITPDGLAIDWLTEKLYWTDSE-----------TNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVD 184 (357)
Q Consensus 116 ~~~p~glavd~~~~~ly~td~~-----------~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD 184 (357)
...|.++++.+.++.+|++... ...+...+.........+.. ...|.+++++
T Consensus 81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----------------~~~~~~~~~s 143 (337)
T d1pbyb_ 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-----------------PRQITMLAWA 143 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-----------------CSSCCCEEEC
T ss_pred ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-----------------cCCceEEEEc
Confidence 2467899999999999998742 34555555554433332221 1368899999
Q ss_pred CCCCeEEEEeCCCCeEEEEEcCCCceEEEec-CCC-----CCceEEEEeCC--CCEE----EEEeCCCC--------CCe
Q psy13635 185 WVARNLYWTDTGTDRIEVCRLEGTHRKVLVN-TDL-----VEPRAITLSPA--HGYL----FWSDWNEK--------RPK 244 (357)
Q Consensus 185 ~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~-~~~-----~~P~giavd~~--~g~L----y~~d~~~~--------~~~ 244 (357)
+.+..+|+++. .+...+........... ... ..|.+..+.+. .+.. +.+..... ...
T Consensus 144 ~dg~~l~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (337)
T d1pbyb_ 144 RDGSKLYGLGR---DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTG 220 (337)
T ss_dssp TTSSCEEEESS---SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEE
T ss_pred CCCCEEEEEcC---CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCcc
Confidence 88889998753 34555554333222221 111 11222221110 0111 11110000 123
Q ss_pred EEEEecCCCceE-EEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEE--CCEEEE
Q psy13635 245 IERSLLNGGERV-LLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLL--GDYVYW 321 (357)
Q Consensus 245 I~~~~~dg~~~~-~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~--~~~ly~ 321 (357)
+...+....... ......-..+..+++.+....+|.++ +.|...+.........+. ....|.++++. +..||+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v 296 (337)
T d1pbyb_ 221 LLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY---NVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWL 296 (337)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE---SEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEE
T ss_pred EEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEcc---ccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEE
Confidence 444444332222 22223345677788887777777775 578888886554333332 34568888886 567888
Q ss_pred EeCCCCeEEEEeCccCceeEEEecccCCceeee
Q psy13635 322 TDWQRRSIDRVNKITGNDREVIIERSCTGVTRR 354 (357)
Q Consensus 322 td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~i~ 354 (357)
+. ..+.|..++..+++....|....+.++.+-
T Consensus 297 ~~-~~~~i~v~D~~t~~~v~~i~~~g~~~~~~~ 328 (337)
T d1pbyb_ 297 GG-ALGDLAAYDAETLEKKGQVDLPGNASMSLA 328 (337)
T ss_dssp ES-BSSEEEEEETTTCCEEEEEECGGGCCCBTC
T ss_pred Ee-CCCcEEEEECCCCcEEEEEECCCCCcccee
Confidence 75 457899999989999888876666666554
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=98.99 E-value=5.3e-08 Score=90.88 Aligned_cols=165 Identities=16% Similarity=0.144 Sum_probs=111.8
Q ss_pred EEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecC-CCCcceeeeeccCcccccCCceEEEeC--
Q psy13635 109 HNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWED-IDQPRAIASYKLPTIEVEHPDGVAVDW-- 185 (357)
Q Consensus 109 ~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~-~~~p~~i~~~~~~~~~~~~p~glavD~-- 185 (357)
.+++.+++..|.+|++.+ +++||+++...++|.+++.++...+.+.... ... ....-..--|||+|+
T Consensus 19 ~~~ia~~L~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~---------~~~ge~GLLgia~~Pdf 88 (450)
T d1crua_ 19 KKVILSNLNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVN---------DADGQNGLLGFAFHPDF 88 (450)
T ss_dssp EEEEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCC---------CTTSSCSEEEEEECTTT
T ss_pred EEEEECCCCCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCcccc---------ccCCCCceeeEEeCCCC
Confidence 678888999999999996 6789999988899999997766555443211 000 011112445799986
Q ss_pred -CCCeEEEEeCC------------CCeEEEEEcCCCc-----eEEEec----CCCCCceEEEEeCCCCEEEEEeCCC---
Q psy13635 186 -VARNLYWTDTG------------TDRIEVCRLEGTH-----RKVLVN----TDLVEPRAITLSPAHGYLFWSDWNE--- 240 (357)
Q Consensus 186 -~~~~lY~td~~------------~~~I~~~~~~g~~-----~~~~~~----~~~~~P~giavd~~~g~Ly~~d~~~--- 240 (357)
.++.+|++... ...+.+...++.. .+.+.. .....-..|++++. |+||++--..
T Consensus 89 ~~n~~iYvsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpD-G~LYvs~Gd~~~~ 167 (450)
T d1crua_ 89 KNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPD-QKIYYTIGDQGRN 167 (450)
T ss_dssp TTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTT-SCEEEEECCTTTT
T ss_pred ccCCEEEEEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCC-CCEEEEecCCCcc
Confidence 47899986431 0134555544332 122221 12245568999984 8999986431
Q ss_pred ---------------------------CCCeEEEEecCCCce----------EEEeeCCCCCceEEEEecCCCEEEEEeC
Q psy13635 241 ---------------------------KRPKIERSLLNGGER----------VLLVKDRLGWPNGITLDVDNEKLYWCDA 283 (357)
Q Consensus 241 ---------------------------~~~~I~~~~~dg~~~----------~~~~~~~l~~P~giaid~~~~~lY~~d~ 283 (357)
..++|.|++.+|+.. .+++..++.+|.|+++|+ +++||.+|.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~RNp~g~~~~p-~g~l~~~e~ 246 (450)
T d1crua_ 168 QLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTP-NGKLLQSEQ 246 (450)
T ss_dssp SGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECT-TSCEEEEEE
T ss_pred cccccccccccccCcccccccccccccccCceEEeeccccccccccccccccceEEEeccccccceeecc-cceeeeccc
Confidence 137999999998642 356778999999999996 899999997
Q ss_pred CC
Q psy13635 284 KT 285 (357)
Q Consensus 284 ~~ 285 (357)
+.
T Consensus 247 G~ 248 (450)
T d1crua_ 247 GP 248 (450)
T ss_dssp CS
T ss_pred cc
Confidence 54
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.93 E-value=1.2e-07 Score=85.06 Aligned_cols=194 Identities=14% Similarity=0.101 Sum_probs=124.1
Q ss_pred cCCceeEEEEcCCCeEEEEeC------------CCCEEEEEEcCCCceEEE---EecCCCCcceeeeeccCcccccCCce
Q psy13635 116 LITPDGLAIDWLTEKLYWTDS------------ETNKLEVSSLDGKKRKVL---YWEDIDQPRAIASYKLPTIEVEHPDG 180 (357)
Q Consensus 116 ~~~p~glavd~~~~~ly~td~------------~~~~I~~~~~~g~~~~~~---~~~~~~~p~~i~~~~~~~~~~~~p~g 180 (357)
...|+.|++++ ++.+|++.. ..++|..++++....... ...+. +......|.|
T Consensus 34 ~~G~EDi~~~~-dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~-----------~~~~~f~PhG 101 (340)
T d1v04a_ 34 DNGSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNT-----------LDISSFNPHG 101 (340)
T ss_dssp CSCCCEEEECT-TSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSS-----------SCGGGCCEEE
T ss_pred CCCcceEEECC-CCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCC-----------CCCcceeccc
Confidence 34789999986 677777653 147888888765433221 11111 0111136999
Q ss_pred EEE--eC-CCCeEEEEeC--CCCeEEEEEcC--CCce---EEEecCCCCCceEEEEeCCCCEEEEEeCCCC---------
Q psy13635 181 VAV--DW-VARNLYWTDT--GTDRIEVCRLE--GTHR---KVLVNTDLVEPRAITLSPAHGYLFWSDWNEK--------- 241 (357)
Q Consensus 181 lav--D~-~~~~lY~td~--~~~~I~~~~~~--g~~~---~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~--------- 241 (357)
|.+ +. ....||+.+- ...+|+.+.++ +... ..+....+..|++|++.. .|.+|+|+....
T Consensus 102 i~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e 180 (340)
T d1v04a_ 102 ISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWE 180 (340)
T ss_dssp EEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHH
T ss_pred eeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec-CCCEEEecCccCcChhhhhhh
Confidence 987 31 2226888875 34567766654 3322 233334578899999996 589999974321
Q ss_pred ----CCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEE--ecCCCCceEEEEEE
Q psy13635 242 ----RPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRREL--INENLPHVFGISLL 315 (357)
Q Consensus 242 ----~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i--~~~~~~~p~gia~~ 315 (357)
.+.-.....++...+++ .+++..|+||++++++..||+++...++|+++++++...... ....-..|.+|.++
T Consensus 181 ~~~~~~~g~v~~~~~~~~~~~-~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d 259 (340)
T d1v04a_ 181 MHLGLAWSFVTYYSPNDVRVV-AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVD 259 (340)
T ss_dssp HHTTCCCEEEEEECSSCEEEE-EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEEC
T ss_pred HhhcCCceeEEEEcCCceEEE-cCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEe
Confidence 12334444555555544 467899999999988999999999999999999877543211 11234579999997
Q ss_pred --CCEEEEEe
Q psy13635 316 --GDYVYWTD 323 (357)
Q Consensus 316 --~~~ly~td 323 (357)
+|.+|++.
T Consensus 260 ~~~g~lwva~ 269 (340)
T d1v04a_ 260 PVTGDLWVGC 269 (340)
T ss_dssp TTTCCEEEEE
T ss_pred cCCCEEEEEE
Confidence 36677764
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.93 E-value=1.9e-06 Score=76.02 Aligned_cols=296 Identities=10% Similarity=-0.017 Sum_probs=168.6
Q ss_pred cCCCCeEEEEEe------CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCC---------CCeEEEEEcC
Q psy13635 37 HHVAAQMLLFAT------SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG---------TEMISCCTFD 101 (357)
Q Consensus 37 ~~~~~~~l~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~---------~~~I~~~~~~ 101 (357)
.++....+++++ ..+++.+|..+..... .+..-..| ++++++++..||+++.. ++.|..+++.
T Consensus 9 ~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~-~~~~g~~~-~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~ 86 (355)
T d2bbkh_ 9 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIG-MIDGGFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 86 (355)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEE-EEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred eCCCCCEEEEEecccCCCcCeEEEEECCCCcEEE-EEECCCCC-ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECC
Confidence 345555566654 3358999987643222 22222233 68999999999998642 3567777777
Q ss_pred CCCcceeEEEEeC------CcCCceeEEEEcCCCeEEEEeCC-CCEEEEEEcCCCceEEEEecCCCCcceeeeeccCccc
Q psy13635 102 GNNVGSKHNVITN------GLITPDGLAIDWLTEKLYWTDSE-TNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIE 174 (357)
Q Consensus 102 g~~~~~~~~~~~~------~~~~p~glavd~~~~~ly~td~~-~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~ 174 (357)
+... ..++... ....|.++++.+.++.+|+++.. ...+...+.........+... .... ...
T Consensus 87 t~~~--~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-----~~~ 155 (355)
T d2bbkh_ 87 TLLP--TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP----DCYH-----IFP 155 (355)
T ss_dssp TCCE--EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC----SEEE-----EEE
T ss_pred CCCE--EEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecC----Ccce-----Eee
Confidence 6542 1222111 12468899999999999998854 455666666544332222111 0000 001
Q ss_pred ccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCc
Q psy13635 175 VEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGE 254 (357)
Q Consensus 175 ~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~ 254 (357)
...+..+++.+.+..+++.....+.+...+....... ........+..+..+.+.++... ++++..++++..
T Consensus 156 ~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~ 227 (355)
T d2bbkh_ 156 TAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE-----DEFLINHPAYSQKAGRLVWPTYT---GKIHQIDLSSGD 227 (355)
T ss_dssp EETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT-----TSCBCSCCEEETTTTEEEEEBTT---SEEEEEECTTSS
T ss_pred cCCcceEEEcCCCCEEEEEecCCCeEEEEecccccce-----ecceeeeccccCCCCeEEEecCC---CeEEEEecCCCc
Confidence 1234556777667777777766665555543321110 00001112333344555555433 355555555443
Q ss_pred eEEEeeC----------C--CCCceEEEEecCCCEEEEEeCCC---------CeEEEEeCCCCCeEEEecCCCCceEEEE
Q psy13635 255 RVLLVKD----------R--LGWPNGITLDVDNEKLYWCDAKT---------DKIEMIDFDGNNRRELINENLPHVFGIS 313 (357)
Q Consensus 255 ~~~~~~~----------~--l~~P~giaid~~~~~lY~~d~~~---------~~I~~~~~dG~~~~~i~~~~~~~p~gia 313 (357)
...+... . ...+..+++.+.+..+|++.... +.|..++.........+. ....|.+++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a 306 (355)
T d2bbkh_ 228 AKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSIN 306 (355)
T ss_dssp CEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEE
T ss_pred EEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEE
Confidence 3322110 0 01234588888889999875422 468888876443322221 234578888
Q ss_pred EE-CC--EEEEEeCCCCeEEEEeCccCceeEEEecccCCceeee
Q psy13635 314 LL-GD--YVYWTDWQRRSIDRVNKITGNDREVIIERSCTGVTRR 354 (357)
Q Consensus 314 ~~-~~--~ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~i~ 354 (357)
+. +| .+|++....+.|+.+|..+|+.+..+......|+-|.
T Consensus 307 ~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~ 350 (355)
T d2bbkh_ 307 VSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVIT 350 (355)
T ss_dssp ECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEE
T ss_pred EcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEE
Confidence 86 23 4788888889999999999999888876667777653
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.89 E-value=2.2e-08 Score=92.44 Aligned_cols=231 Identities=12% Similarity=0.044 Sum_probs=147.9
Q ss_pred EEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEE-eCCcCCceeEEEEcCCCeEEEEeCCCCEEEE------------
Q psy13635 77 DYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI-TNGLITPDGLAIDWLTEKLYWTDSETNKLEV------------ 143 (357)
Q Consensus 77 ~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~-~~~~~~p~glavd~~~~~ly~td~~~~~I~~------------ 143 (357)
+..|++..||++|..+++|.+++++... ...++ ......|.|+++.+.++.+|++......+..
T Consensus 78 ~gtpDGr~lfV~d~~~~rVavIDl~t~k---~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~ 154 (441)
T d1qnia2 78 DGRYDGKYLFINDKANTRVARIRLDIMK---TDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNS 154 (441)
T ss_dssp TTEEEEEEEEEEETTTTEEEEEETTTTE---EEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGE
T ss_pred cccCCCCEEEEEcCCCCEEEEEECCCCc---EeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccc
Confidence 3456688999999999999999998763 23333 3446789999999889999998765544422
Q ss_pred ------EEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCC-CceEEEecC
Q psy13635 144 ------SSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEG-THRKVLVNT 216 (357)
Q Consensus 144 ------~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g-~~~~~~~~~ 216 (357)
++........ .+.+ -..|.++++++.++.+|++..+.+.+...+... .....+.
T Consensus 155 ~~~~~~iD~~t~~v~~----------qI~v-------~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~-- 215 (441)
T d1qnia2 155 YTMFTAIDAETMDVAW----------QVIV-------DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVV-- 215 (441)
T ss_dssp EEEEEEEETTTCSEEE----------EEEE-------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEE--
T ss_pred cceEEeecCccceeeE----------EEec-------CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEE--
Confidence 2222221111 1111 136999999999999999998766544433222 2222221
Q ss_pred CCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCC-
Q psy13635 217 DLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDG- 295 (357)
Q Consensus 217 ~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG- 295 (357)
....|.++++.+.++.+++.+. +.+.............+.. -..|.|+++++++.++|++....+.|..++.+-
T Consensus 216 v~n~p~~~~~~~dGk~~~v~~~----~v~vvd~~~~~~v~~~IPv-gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~ 290 (441)
T d1qnia2 216 VFNVERIAAAVKAGNFKTIGDS----KVPVVDGRGESEFTRYIPV-PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKL 290 (441)
T ss_dssp EEEHHHHHHHHHTTCCBCCTTC----CCCEEECSSSCSSEEEECC-BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGH
T ss_pred eCCccceEEEecCCCEEEeCCC----CcEEEEcccCCceEEEEeC-CCCccCceECCCCCEEEEeCCcCCcEEEEEeehh
Confidence 1245777777776555544322 2333333344444444433 367999999999999999999999999999642
Q ss_pred ------C--CeEEEec--CCCCceEEEEEEC-CEEEEEeCCCCeEEEEeC
Q psy13635 296 ------N--NRRELIN--ENLPHVFGISLLG-DYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 296 ------~--~~~~i~~--~~~~~p~gia~~~-~~ly~td~~~~~I~~~~~ 334 (357)
. .+..+.. +..-.|..-++++ |+.|.+-.-...|.+-+.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~ 340 (441)
T d1qnia2 291 DDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNI 340 (441)
T ss_dssp HHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEH
T ss_pred hhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEecc
Confidence 1 1111222 2233676677874 889999888888887774
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.86 E-value=3.4e-07 Score=82.32 Aligned_cols=286 Identities=7% Similarity=-0.059 Sum_probs=163.4
Q ss_pred CCCCeEEEEEe----CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCC---------CCeEEEEEcCCCC
Q psy13635 38 HVAAQMLLFAT----SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG---------TEMISCCTFDGNN 104 (357)
Q Consensus 38 ~~~~~~l~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~---------~~~I~~~~~~g~~ 104 (357)
.+...++.+.. ...++.+|.++......+.... .+ ++++.++...||+++.. ++.|..++..+..
T Consensus 30 ~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~-~~-~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~ 107 (368)
T d1mdah_ 30 ISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF-LS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL 107 (368)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECT-TC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC
T ss_pred CCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCC-CC-cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCc
Confidence 33444555543 2358889987743333332222 33 68899988899998642 3458888887664
Q ss_pred cceeEEEEeC------CcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCC
Q psy13635 105 VGSKHNVITN------GLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHP 178 (357)
Q Consensus 105 ~~~~~~~~~~------~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p 178 (357)
. ...+... ....|.++++.+.++.||+++...+.|..+++........... |
T Consensus 108 ~--~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~--------------------~ 165 (368)
T d1mdah_ 108 P--IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKS--------------------A 165 (368)
T ss_dssp E--EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEEC--------------------S
T ss_pred E--eeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeec--------------------c
Confidence 1 1222211 1346889999999999999998889999999877654333321 1
Q ss_pred ceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceE-EEecC-----CCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCC
Q psy13635 179 DGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRK-VLVNT-----DLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNG 252 (357)
Q Consensus 179 ~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~-~~~~~-----~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg 252 (357)
.+..+-+.....+++....+++...+.+..... ..... ....+.....++. +.++++..+ +++.++.++
T Consensus 166 ~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~----~v~~~~~~~ 240 (368)
T d1mdah_ 166 SCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYP-GMLVWAVAS----SILQGDIPA 240 (368)
T ss_dssp SCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTT-TEEEECBSS----CCEEEECCS
T ss_pred CcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccC-cEEEEecCC----CEEEEeecC
Confidence 111111122334444444444444443322211 11110 1123344455543 555554433 455555554
Q ss_pred CceEEEeeCC------------CCCceEEEEecCCCEEEEEeCCC--------CeEEEEeCCCCCeEEEecCCCCceEEE
Q psy13635 253 GERVLLVKDR------------LGWPNGITLDVDNEKLYWCDAKT--------DKIEMIDFDGNNRRELINENLPHVFGI 312 (357)
Q Consensus 253 ~~~~~~~~~~------------l~~P~giaid~~~~~lY~~d~~~--------~~I~~~~~dG~~~~~i~~~~~~~p~gi 312 (357)
.....+.... ...+..+++.+..+.+|++.... .+|+.++.....+...+. ....|.++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~ 319 (368)
T d1mdah_ 241 AGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAI 319 (368)
T ss_dssp SCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEE
T ss_pred CceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEE
Confidence 4443332111 01245688888999999985322 358888876544322211 22357778
Q ss_pred EEE--CC-EEEEEeCCCCeEEEEeCccCceeEEEecccCCceeee
Q psy13635 313 SLL--GD-YVYWTDWQRRSIDRVNKITGNDREVIIERSCTGVTRR 354 (357)
Q Consensus 313 a~~--~~-~ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~i~ 354 (357)
++. +. .+|.+....+.|+.+|..+|+....+.-+ ..|..|.
T Consensus 320 a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g-~~P~~l~ 363 (368)
T d1mdah_ 320 IAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD-KGPESLS 363 (368)
T ss_dssp EECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC-SCCCEEE
T ss_pred EECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECC-CCCCEEE
Confidence 885 33 58999999999999999899988777544 4577764
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.80 E-value=1.3e-06 Score=76.47 Aligned_cols=283 Identities=11% Similarity=-0.048 Sum_probs=156.0
Q ss_pred ecCCCCeEEEEEeC-CcEEEEEcCCCCcceE-eccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEe
Q psy13635 36 SHHVAAQMLLFATS-KDIRIANLSRPLKPVT-IIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT 113 (357)
Q Consensus 36 ~~~~~~~~l~~~~~-~~i~~~~~~~~~~~~~-~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~ 113 (357)
+.+....+|+.++. +.|..+|+...+-... .++....|.++++++++..+|+++..++.|..+++.... ......
T Consensus 3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~---~~~~~~ 79 (346)
T d1jmxb_ 3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK---NTFHAN 79 (346)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE---EEEEEE
T ss_pred cCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCe---eeeeec
Confidence 44556678887774 5799999976432222 245566799999999889999999999999999988763 121222
Q ss_pred CC------cCCceeEEEEcCCCeEEEEeCC-----------CCEEEEEEcCC-CceEEEEecCCCCcceeeeeccCcccc
Q psy13635 114 NG------LITPDGLAIDWLTEKLYWTDSE-----------TNKLEVSSLDG-KKRKVLYWEDIDQPRAIASYKLPTIEV 175 (357)
Q Consensus 114 ~~------~~~p~glavd~~~~~ly~td~~-----------~~~I~~~~~~g-~~~~~~~~~~~~~p~~i~~~~~~~~~~ 175 (357)
.. ...|.++++++.++.+|+++.. ...+...+... .....+... ..-
T Consensus 80 ~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---------------~~~ 144 (346)
T d1jmxb_ 80 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF---------------PMP 144 (346)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE---------------ECC
T ss_pred ccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEee---------------ecc
Confidence 11 1368999999999999998743 23333333221 111000000 000
Q ss_pred cCCceEEEeCCCCeEEEEeCCCCeEEEEEcCC-CceEEEecCCCCCceEEEEeCCCCEEEEEeCCCC-------------
Q psy13635 176 EHPDGVAVDWVARNLYWTDTGTDRIEVCRLEG-THRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEK------------- 241 (357)
Q Consensus 176 ~~p~glavD~~~~~lY~td~~~~~I~~~~~~g-~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~------------- 241 (357)
.....+ .....+++|+++. .+...+... .....+. ....|.++++.|....+|.+.....
T Consensus 145 ~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (346)
T d1jmxb_ 145 RQVYLM-RAADDGSLYVAGP---DIYKMDVKTGKYTVALP--LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKD 218 (346)
T ss_dssp SSCCCE-EECTTSCEEEESS---SEEEECTTTCCEEEEEC--STTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC--
T ss_pred CceEEE-EecCCCEEEEeCC---cceEEEccCCCEEEEEe--cCCCccceEEeccccEEEEEecCCCceEeeeeeeeecc
Confidence 112222 2335667777643 355555443 2222222 1234555555554444444433321
Q ss_pred ----------CCeEEEEecCCCceE-EEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceE
Q psy13635 242 ----------RPKIERSLLNGGERV-LLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVF 310 (357)
Q Consensus 242 ----------~~~I~~~~~dg~~~~-~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~ 310 (357)
...+...+....... ...........+++..+.++.+.... .+.|...+........... ....|.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~v~d~~~~~~~~~~~-~~~~~~ 295 (346)
T d1jmxb_ 219 DKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN-LDHTYY 295 (346)
T ss_dssp -----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCC
T ss_pred CceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec--CCeEEEEECCCCcEEEEEc-CCCCEE
Confidence 012222233222211 11111222334555555555554333 3578888875443322222 234688
Q ss_pred EEEEE--CCEEEEEeCCCCeEEEEeCccCceeEEEecc
Q psy13635 311 GISLL--GDYVYWTDWQRRSIDRVNKITGNDREVIIER 346 (357)
Q Consensus 311 gia~~--~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~ 346 (357)
++++. +.+||++.. .+.|..+|..+++....|.-.
T Consensus 296 ~va~s~DG~~l~v~~~-d~~v~v~D~~t~~~i~~i~~p 332 (346)
T d1jmxb_ 296 CVAFDKKGDKLYLGGT-FNDLAVFNPDTLEKVKNIKLP 332 (346)
T ss_dssp EEEECSSSSCEEEESB-SSEEEEEETTTTEEEEEEECS
T ss_pred EEEEcCCCCEEEEEeC-CCcEEEEECccCCEEEEEECC
Confidence 88885 578888865 578999999889888877554
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.76 E-value=5.3e-05 Score=67.03 Aligned_cols=263 Identities=8% Similarity=-0.041 Sum_probs=146.1
Q ss_pred EeecCCCCeEEEEEeC-----------CcEEEEEcCCCCcceEec-------cCCCcEEEEEEEccCCEEEEEeCC-CCe
Q psy13635 34 ALSHHVAAQMLLFATS-----------KDIRIANLSRPLKPVTII-------KDLEEGAAIDYYYKKSMVCWTDHG-TEM 94 (357)
Q Consensus 34 ~~~~~~~~~~l~~~~~-----------~~i~~~~~~~~~~~~~~~-------~~~~~~~~i~~d~~~~~ly~~d~~-~~~ 94 (357)
.++-+++...+++++. +.|..+|+.+......+. .....|.++.+.+.+..+|+.... .+.
T Consensus 70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~ 149 (373)
T d2madh_ 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCc
Confidence 4555666667777652 347788887632221111 112345677788877777766543 333
Q ss_pred EEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCccc
Q psy13635 95 ISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIE 174 (357)
Q Consensus 95 I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~ 174 (357)
+...+..... . ......|.++++.+.++.+|++....+++.+.+................ ...
T Consensus 150 ~~~~~~~~~~-----~--~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~----------~~~ 212 (373)
T d2madh_ 150 VGLVVQGGSS-----D--DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLT----------AAQ 212 (373)
T ss_pred eEEeeccCCe-----E--EEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccc----------cCc
Confidence 4444443331 1 1223457889999888899999999999999887765543332211110 001
Q ss_pred ccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEec------------CCCCCceEEEEeCCCCEEEEEeCCCC-
Q psy13635 175 VEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVN------------TDLVEPRAITLSPAHGYLFWSDWNEK- 241 (357)
Q Consensus 175 ~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~------------~~~~~P~giavd~~~g~Ly~~d~~~~- 241 (357)
...+..++.+. +..++.....+++...+..+........ .....+..+++++....+|++.....
T Consensus 213 ~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 290 (373)
T d2madh_ 213 NLLTQPAQANK--SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSA 290 (373)
T ss_pred cceeeeEEECC--CceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCce
Confidence 11222333332 2222222233445544444332211111 01123456777777778887654421
Q ss_pred ------CCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCE-EEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEE
Q psy13635 242 ------RPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEK-LYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISL 314 (357)
Q Consensus 242 ------~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~-lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~ 314 (357)
...+...+.........+. .-..|.++++.+++.+ ||++....+.|...|.........+......|.+|++
T Consensus 291 ~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~ 369 (373)
T d2madh_ 291 WKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSV 369 (373)
T ss_pred EEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEE
Confidence 2355666654443333332 2356899999876655 6788888899999998654444444445678999998
Q ss_pred EC
Q psy13635 315 LG 316 (357)
Q Consensus 315 ~~ 316 (357)
.+
T Consensus 370 ~~ 371 (373)
T d2madh_ 370 MN 371 (373)
T ss_pred ec
Confidence 64
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.75 E-value=3e-06 Score=78.15 Aligned_cols=198 Identities=11% Similarity=-0.011 Sum_probs=140.3
Q ss_pred CeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCC
Q psy13635 129 EKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGT 208 (357)
Q Consensus 129 ~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~ 208 (357)
+.++++.+..++|..++.+.......+..+ ..|.++++.|.++++|++.. .+.|...+++..
T Consensus 32 ~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-----------------~~~~~v~fSpDG~~l~~~s~-dg~v~~~d~~t~ 93 (432)
T d1qksa2 32 NLFSVTLRDAGQIALIDGSTYEIKTVLDTG-----------------YAVHISRLSASGRYLFVIGR-DGKVNMIDLWMK 93 (432)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEECS-----------------SCEEEEEECTTSCEEEEEET-TSEEEEEETTSS
T ss_pred cEEEEEEcCCCEEEEEECCCCcEEEEEeCC-----------------CCeeEEEECCCCCEEEEEcC-CCCEEEEEeeCC
Confidence 344689999999999999876554444332 36899999999999998875 478999998754
Q ss_pred ceEEEec-CCCCCceEEEEeC----CCCEEEEEeCCCCCCeEEEEecCCCceEEEeeC-----------CCCCceEEEEe
Q psy13635 209 HRKVLVN-TDLVEPRAITLSP----AHGYLFWSDWNEKRPKIERSLLNGGERVLLVKD-----------RLGWPNGITLD 272 (357)
Q Consensus 209 ~~~~~~~-~~~~~P~giavd~----~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~-----------~l~~P~giaid 272 (357)
....... .....|.++++++ +..+||.+.... +.|...+.+.......... .-..+.+++.+
T Consensus 94 ~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~--~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s 171 (432)
T d1qksa2 94 EPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWP--PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILAS 171 (432)
T ss_dssp SCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEET--TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEEC
T ss_pred CceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCC--CeEEEEeCccccceeeeccCCccccceeccCCCceeEEEEC
Confidence 3322211 2345788998865 456799988774 4888888776555443322 12345678888
Q ss_pred cCCCEEEEEeCCCCeEEEEeCCCCC-eEEEecCCCCceEEEEEE--CCEEEEEeCCCCeEEEEeCccCceeEEEecc
Q psy13635 273 VDNEKLYWCDAKTDKIEMIDFDGNN-RRELINENLPHVFGISLL--GDYVYWTDWQRRSIDRVNKITGNDREVIIER 346 (357)
Q Consensus 273 ~~~~~lY~~d~~~~~I~~~~~dG~~-~~~i~~~~~~~p~gia~~--~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~ 346 (357)
+.+..+|++....+.|..++..... .+...-.....|.++++. +.++|++....+.+..++..+++....+..+
T Consensus 172 ~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g 248 (432)
T d1qksa2 172 HYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTG 248 (432)
T ss_dssp SSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred CCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccC
Confidence 8888999999999999999975433 221111234678898887 4679999988899999998777766665443
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.74 E-value=1.4e-05 Score=73.40 Aligned_cols=202 Identities=6% Similarity=-0.133 Sum_probs=134.6
Q ss_pred CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEc--
Q psy13635 49 SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDW-- 126 (357)
Q Consensus 49 ~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~-- 126 (357)
.+.|..+|+.+..... .++....|.+++|+|++..+|.++. ++.|..++++.... ....-......|.++++.+
T Consensus 41 ~g~v~v~D~~t~~v~~-~~~~g~~~~~v~fSpDG~~l~~~s~-dg~v~~~d~~t~~~--~~~~~i~~~~~~~~~~~s~~~ 116 (432)
T d1qksa2 41 AGQIALIDGSTYEIKT-VLDTGYAVHISRLSASGRYLFVIGR-DGKVNMIDLWMKEP--TTVAEIKIGSEARSIETSKME 116 (432)
T ss_dssp TTEEEEEETTTCCEEE-EEECSSCEEEEEECTTSCEEEEEET-TSEEEEEETTSSSC--CEEEEEECCSEEEEEEECCST
T ss_pred CCEEEEEECCCCcEEE-EEeCCCCeeEEEECCCCCEEEEEcC-CCCEEEEEeeCCCc--eEEEEEecCCCCCCeEEeccc
Confidence 4568999997744333 3344467999999999999998865 57899999875531 1111112234678887753
Q ss_pred --CCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEE
Q psy13635 127 --LTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCR 204 (357)
Q Consensus 127 --~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~ 204 (357)
.++.||++....+.|...+..................... ......+.++++++.+..+|++....+.|...+
T Consensus 117 SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d 191 (432)
T d1qksa2 117 GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQE-----YHPEPRVAAILASHYRPEFIVNVKETGKILLVD 191 (432)
T ss_dssp TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCC-----EESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred CCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCcccccee-----ccCCCceeEEEECCCCCEEEEEEccCCeEEEEE
Confidence 5778999999999999999876654443322111110000 011123456777888889999999989999998
Q ss_pred cCCCc-eEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeC
Q psy13635 205 LEGTH-RKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKD 261 (357)
Q Consensus 205 ~~g~~-~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~ 261 (357)
..... ..+..-..-..|.+++++|.+.++|.+.... ..+...+.+..........
T Consensus 192 ~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~--~~v~v~d~~~~~~~~~~~~ 247 (432)
T d1qksa2 192 YTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANAR--NKLVVIDTKEGKLVAIEDT 247 (432)
T ss_dssp TTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGG--TEEEEEETTTTEEEEEEEC
T ss_pred ccCCCcceEEEEcccCccccceECCCCCEEEEecccc--ceEEEeecccceEEEEecc
Confidence 76533 2222112336799999999877899998875 4888888887766555543
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.73 E-value=5.9e-05 Score=65.72 Aligned_cols=277 Identities=9% Similarity=-0.024 Sum_probs=169.1
Q ss_pred eecCCCCeEEEEEeCCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeC
Q psy13635 35 LSHHVAAQMLLFATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN 114 (357)
Q Consensus 35 ~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 114 (357)
++.++....+++++.+.+...+++................+++|.|.++.| .+...++.|...++...... ....+..
T Consensus 23 ~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~l-atg~~dg~i~iwd~~~~~~~-~~~~~~~ 100 (311)
T d1nr0a1 23 LGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYC-ASGDVHGNVRIWDTTQTTHI-LKTTIPV 100 (311)
T ss_dssp CEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEE-EEEETTSEEEEEESSSTTCC-EEEEEEC
T ss_pred EEEcCCCCEEEEEeCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeE-eccccCceEeeeeeeccccc-ccccccc
Confidence 344555566888888889999998755555555556788999999875555 45555678888888766421 1223333
Q ss_pred CcCCceeEEEEcCCCeEEEEeCC-CCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEE
Q psy13635 115 GLITPDGLAIDWLTEKLYWTDSE-TNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWT 193 (357)
Q Consensus 115 ~~~~p~glavd~~~~~ly~td~~-~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~t 193 (357)
.-..+..+++.+.++.|..+..+ ...+.+.+.+........ .........+++++.++.++++
T Consensus 101 ~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l----------------~~h~~~v~~v~~~~~~~~~l~s 164 (311)
T d1nr0a1 101 FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNL----------------TGQARAMNSVDFKPSRPFRIIS 164 (311)
T ss_dssp SSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCC----------------CCCSSCEEEEEECSSSSCEEEE
T ss_pred ccCccccccccccccccccccccccccccccccccccccccc----------------cccccccccccccccceeeecc
Confidence 33456789998766656555432 234555565533221110 1111345778888777777888
Q ss_pred eCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCC-------CCCc
Q psy13635 194 DTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDR-------LGWP 266 (357)
Q Consensus 194 d~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~-------l~~P 266 (357)
....+.|...+...................++++|....|+.+... +.|...+............. -...
T Consensus 165 gs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d---~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V 241 (311)
T d1nr0a1 165 GSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD---GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSV 241 (311)
T ss_dssp EETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETT---SCEEEEETTTCCEEEECBCTTSSSCSSSSCE
T ss_pred cccccccccccccccccccccccccccccccccCcccccccccccc---ccccccccccccccccccccccccccccccc
Confidence 7777889998888766555554444566899999976666655544 46777776554443333221 1234
Q ss_pred eEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCC---CceEEEEEECCEEEEEeCCCCeEEEEeC
Q psy13635 267 NGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENL---PHVFGISLLGDYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 267 ~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~---~~p~gia~~~~~ly~td~~~~~I~~~~~ 334 (357)
.++++++.+..|+.+. ..+.|...+.........+.... ....++...++.++... ..|.|...++
T Consensus 242 ~~~~~s~~~~~l~tgs-~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s-~dG~i~~wd~ 310 (311)
T d1nr0a1 242 FGLTWSPDGTKIASAS-ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSIS-ANGFINFVNP 310 (311)
T ss_dssp EEEEECTTSSEEEEEE-TTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEE-TTCCEEEEET
T ss_pred cccccCCCCCEEEEEe-CCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEE-CCCEEEEEeC
Confidence 6889987666665543 46688888875443322222222 13345555666666555 4577776664
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.61 E-value=2e-05 Score=71.88 Aligned_cols=215 Identities=13% Similarity=0.039 Sum_probs=144.8
Q ss_pred EEeCCcCCceeEEEEcCCCeE-EEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCe
Q psy13635 111 VITNGLITPDGLAIDWLTEKL-YWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARN 189 (357)
Q Consensus 111 ~~~~~~~~p~glavd~~~~~l-y~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~ 189 (357)
++......|..+.+++..+.+ +++..++++|...++........+..+ ..|.++++.|.+++
T Consensus 13 ~~~~~~~~p~~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g-----------------~~~~~vafSPDGk~ 75 (426)
T d1hzua2 13 VLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-----------------YAVHISRMSASGRY 75 (426)
T ss_dssp ESSCGGGSCSSCCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECC-----------------SSEEEEEECTTSCE
T ss_pred eeCCcccCCCcccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCC-----------------CCeeEEEECCCCCE
Confidence 333334556666666554555 578889999999998765443333222 36899999999999
Q ss_pred EEEEeCCCCeEEEEEcCCCceEEEec-CCCCCceEEEEeC----CCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCC--
Q psy13635 190 LYWTDTGTDRIEVCRLEGTHRKVLVN-TDLVEPRAITLSP----AHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDR-- 262 (357)
Q Consensus 190 lY~td~~~~~I~~~~~~g~~~~~~~~-~~~~~P~giavd~----~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~-- 262 (357)
||.+.. .+.|.+.+.+......... .....|.++++++ .+.+||.+.... ..+...+.............
T Consensus 76 l~~~~~-d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~--~~v~i~d~~~~~~~~~~~~~~~ 152 (426)
T d1hzua2 76 LLVIGR-DARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWP--PQFAIMDGETLEPKQIVSTRGM 152 (426)
T ss_dssp EEEEET-TSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEES--SEEEEEETTTCCEEEEEECCEE
T ss_pred EEEEeC-CCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCC--CeEEEEcCCccceeEEeeccCC
Confidence 998875 4689999987554332221 2345688888874 566889888664 47777777665544433221
Q ss_pred ---------CCCceEEEEecCCCEEEEEeCCCCeEEEEeCCC-CCeEEEecCCCCceEEEEEE--CCEEEEEeCCCCeEE
Q psy13635 263 ---------LGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDG-NNRRELINENLPHVFGISLL--GDYVYWTDWQRRSID 330 (357)
Q Consensus 263 ---------l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG-~~~~~i~~~~~~~p~gia~~--~~~ly~td~~~~~I~ 330 (357)
-..+..++..+.+..++++....+.+..+.... .............|.+++++ +..+|++....+.+.
T Consensus 153 ~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~ 232 (426)
T d1hzua2 153 TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVA 232 (426)
T ss_dssp CSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEE
T ss_pred CccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeeccccee
Confidence 123456777778888899999989888887643 33222222346789999986 578999998889999
Q ss_pred EEeCccCceeEEEec
Q psy13635 331 RVNKITGNDREVIIE 345 (357)
Q Consensus 331 ~~~~~~g~~~~~i~~ 345 (357)
.++..+++....+..
T Consensus 233 ~~~~~~~~~~~~~~~ 247 (426)
T d1hzua2 233 VIDSKDRRLSALVDV 247 (426)
T ss_dssp EEETTTTEEEEEEEC
T ss_pred eeecccccEEEEecc
Confidence 999877777665543
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.57 E-value=3e-06 Score=74.00 Aligned_cols=106 Identities=8% Similarity=-0.045 Sum_probs=70.2
Q ss_pred EEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEe
Q psy13635 77 DYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYW 156 (357)
Q Consensus 77 ~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~ 156 (357)
++.+ +++.+++...++.|..+++.... ...++....-..|.++++.+.++.+|+++...+.|.++++..........
T Consensus 3 a~~~-~~~~l~~~~~~~~v~v~D~~t~~--~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~ 79 (346)
T d1jmxb_ 3 ALKA-GHEYMIVTNYPNNLHVVDVASDT--VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 79 (346)
T ss_dssp CCCT-TCEEEEEEETTTEEEEEETTTTE--EEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cCCC-CCcEEEEEcCCCEEEEEECCCCC--EEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeec
Confidence 4444 34444455555678888887653 11222223345799999999899999999999999999987664433322
Q ss_pred cCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeC
Q psy13635 157 EDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDT 195 (357)
Q Consensus 157 ~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~ 195 (357)
... .+ ......|.++++.+.++.+|++..
T Consensus 80 ~~~-~~---------~~~~~~~~~v~~s~DG~~l~v~~~ 108 (346)
T d1jmxb_ 80 LSS-VP---------GEVGRSMYSFAISPDGKEVYATVN 108 (346)
T ss_dssp SCC-ST---------TEEEECSSCEEECTTSSEEEEEEE
T ss_pred ccc-cc---------cccCCceEEEEEecCCCEEEEEec
Confidence 221 11 112247999999999999999864
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.56 E-value=8.3e-07 Score=79.70 Aligned_cols=270 Identities=9% Similarity=-0.007 Sum_probs=147.6
Q ss_pred EeecCCCCeEEEEEeC-----------CcEEEEEcCCCCcceEe-cc------CCCcEEEEEEEccCCEEEEEeCCCCeE
Q psy13635 34 ALSHHVAAQMLLFATS-----------KDIRIANLSRPLKPVTI-IK------DLEEGAAIDYYYKKSMVCWTDHGTEMI 95 (357)
Q Consensus 34 ~~~~~~~~~~l~~~~~-----------~~i~~~~~~~~~~~~~~-~~------~~~~~~~i~~d~~~~~ly~~d~~~~~I 95 (357)
..+.+++...+++++. ..|+.+|..+......+ .+ ....|.++++.+++..||+++...+.+
T Consensus 69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v 148 (368)
T d1mdah_ 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeE
Confidence 3455666667777662 34888998663222211 11 234567899999999999999888999
Q ss_pred EEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEE-ecCCCCcceeeeeccCccc
Q psy13635 96 SCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLY-WEDIDQPRAIASYKLPTIE 174 (357)
Q Consensus 96 ~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~-~~~~~~p~~i~~~~~~~~~ 174 (357)
..+++.+.. ....+.. |....+.+..+..+++....+++..+.++........ ......+.... +...
T Consensus 149 ~~~d~~~~~---~~~~~~~----~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 217 (368)
T d1mdah_ 149 AGLSVPGAS---DDQLTKS----ASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCS----SQAA 217 (368)
T ss_dssp EEEEETTTE---EEEEEEC----SSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBC----SCCE
T ss_pred EEEECCCCc---EeEEeec----cCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccc----eeec
Confidence 999988774 1222221 2221222234455666655666666655433222111 11100000000 0001
Q ss_pred ccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCC--CCCceEEEEeCCCCEEEEEeCCCC------CCeEE
Q psy13635 175 VEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTD--LVEPRAITLSPAHGYLFWSDWNEK------RPKIE 246 (357)
Q Consensus 175 ~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~--~~~P~giavd~~~g~Ly~~d~~~~------~~~I~ 246 (357)
...+.+.++-+..+.+|..+...+.+...+............. ...+..+++++..+.+|++..... ..+|+
T Consensus 218 ~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~ 297 (368)
T d1mdah_ 218 QANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTS 297 (368)
T ss_dssp EETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEE
T ss_pred ccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEE
Confidence 1134445555455555555554444333322111000000000 123457899999999999864421 13577
Q ss_pred EEecCCCceEEEeeCCCCCceEEEEecCCC-EEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEEC
Q psy13635 247 RSLLNGGERVLLVKDRLGWPNGITLDVDNE-KLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLG 316 (357)
Q Consensus 247 ~~~~dg~~~~~~~~~~l~~P~giaid~~~~-~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~~ 316 (357)
.++.........+.. -..|.++++.+++. .||++....+.|..+|.........+ +....|.+|++.+
T Consensus 298 v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i-~~g~~P~~l~~~~ 366 (368)
T d1mdah_ 298 SVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV-ELDKGPESLSVQN 366 (368)
T ss_dssp EEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEEC-CCCSCCCEEECCC
T ss_pred EEECCCCcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEE-ECCCCCCEEEEec
Confidence 788776544332222 24688999987654 58999999999999998554433333 2355799998743
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.53 E-value=1.6e-07 Score=86.67 Aligned_cols=186 Identities=11% Similarity=-0.015 Sum_probs=115.0
Q ss_pred cCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeE-----
Q psy13635 126 WLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRI----- 200 (357)
Q Consensus 126 ~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I----- 200 (357)
+.++.||++|..+++|.+++++......++... ....|.|+++.+.++.+|++....+.+
T Consensus 81 pDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP---------------~g~gphgi~~spdg~t~YV~~~~~~~v~~~~d 145 (441)
T d1qnia2 81 YDGKYLFINDKANTRVARIRLDIMKTDKITHIP---------------NVQAIHGLRLQKVPKTNYVFCNAEFVIPQPND 145 (441)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECT---------------TCCCEEEEEECCSSBCCEEEEEECSCEESSCS
T ss_pred CCCCEEEEEcCCCCEEEEEECCCCcEeeEEecC---------------CCCCccceEEeccCCEEEEEeccCCcccccCc
Confidence 458899999999999999999876554443221 124799999998888999987665544
Q ss_pred -------------EEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCC-CceEEEeeCCCCCc
Q psy13635 201 -------------EVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNG-GERVLLVKDRLGWP 266 (357)
Q Consensus 201 -------------~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg-~~~~~~~~~~l~~P 266 (357)
..++........-+.. -..|.+++++|.++++|++....+ .+...+... .....+. -..+|
T Consensus 146 g~~~~~~~~~~~~~~iD~~t~~v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse--~~~~id~~t~~~~d~i~--v~n~p 220 (441)
T d1qnia2 146 GTDFSLDNSYTMFTAIDAETMDVAWQVIV-DGNLDNTDADYTGKYATSTCYNSE--RAVDLAGTMRNDRDWVV--VFNVE 220 (441)
T ss_dssp SSCCCGGGEEEEEEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTT--CCSSHHHHTCSSBCEEE--EEEHH
T ss_pred ccccccccccceEEeecCccceeeEEEec-CCCccceEECCCCCEEEEEecCCC--ceEEEeccCcceEEEEE--eCCcc
Confidence 2344443222111111 246999999999999999987754 222222111 1111111 11345
Q ss_pred eEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEE--CCEEEEEeCCCCeEEEEeC
Q psy13635 267 NGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLL--GDYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 267 ~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~--~~~ly~td~~~~~I~~~~~ 334 (357)
.++++.+.++.+++. +++.+.............+. ....|.|+++. +.++|++....+.|..++.
T Consensus 221 ~~~~~~~dGk~~~v~--~~~v~vvd~~~~~~v~~~IP-vgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~ 287 (441)
T d1qnia2 221 RIAAAVKAGNFKTIG--DSKVPVVDGRGESEFTRYIP-VPKNPHGLNTSPDGKYFIANGKLSPTVSVIAI 287 (441)
T ss_dssp HHHHHHHTTCCBCCT--TCCCCEEECSSSCSSEEEEC-CBSSCCCEEECTTSCEEEEECTTSSBEEEEEG
T ss_pred ceEEEecCCCEEEeC--CCCcEEEEcccCCceEEEEe-CCCCccCceECCCCCEEEEeCCcCCcEEEEEe
Confidence 566665555544442 23333333334444433443 35679999986 5789999999999999985
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.49 E-value=0.00018 Score=62.51 Aligned_cols=251 Identities=6% Similarity=-0.030 Sum_probs=154.0
Q ss_pred CcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCc
Q psy13635 71 EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKK 150 (357)
Q Consensus 71 ~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~ 150 (357)
+.+..+++++.++.|+++. ++.|...+++... ...+....-.....+++.|. +++..+-...+.|...++....
T Consensus 18 ~~~~~~a~~~~g~~l~~~~--~~~v~i~~~~~~~---~~~~~~~H~~~v~~~~~sp~-g~~latg~~dg~i~iwd~~~~~ 91 (311)
T d1nr0a1 18 GTAVVLGNTPAGDKIQYCN--GTSVYTVPVGSLT---DTEIYTEHSHQTTVAKTSPS-GYYCASGDVHGNVRIWDTTQTT 91 (311)
T ss_dssp TCCCCCEECTTSSEEEEEE--TTEEEEEETTCSS---CCEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEESSSTT
T ss_pred CCeEEEEEcCCCCEEEEEe--CCEEEEEECCCCc---eeEEEcCCCCCEEEEEEeCC-CCeEeccccCceEeeeeeeccc
Confidence 3567789999999988875 4567777776553 23344444566889999975 5555566667899999887654
Q ss_pred eE--EEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCC-CeEEEEEcCCCceEEEecCCCCCceEEEEe
Q psy13635 151 RK--VLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGT-DRIEVCRLEGTHRKVLVNTDLVEPRAITLS 227 (357)
Q Consensus 151 ~~--~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~-~~I~~~~~~g~~~~~~~~~~~~~P~giavd 227 (357)
.. .... .. -.....+++.+.+..|..+..+. ..+.+.+.+.................++++
T Consensus 92 ~~~~~~~~-~~---------------~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~ 155 (311)
T d1nr0a1 92 HILKTTIP-VF---------------SGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFK 155 (311)
T ss_dssp CCEEEEEE-CS---------------SSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEEC
T ss_pred cccccccc-cc---------------cCcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 22 2221 10 12456788887666666554433 346666666433222222233557899999
Q ss_pred CCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCC--
Q psy13635 228 PAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINEN-- 305 (357)
Q Consensus 228 ~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~-- 305 (357)
|.+..++++-... +.|...+.............-....++++++.+..|+.+. ..+.|...+.............
T Consensus 156 ~~~~~~l~sgs~d--~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~-~d~~v~~~d~~~~~~~~~~~~~~~ 232 (311)
T d1nr0a1 156 PSRPFRIISGSDD--NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG-GDGTIVLYNGVDGTKTGVFEDDSL 232 (311)
T ss_dssp SSSSCEEEEEETT--SCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCEEEECBCTTS
T ss_pred ccceeeecccccc--cccccccccccccccccccccccccccccCcccccccccc-cccccccccccccccccccccccc
Confidence 8766666665442 5788888876655555544445568999987665555544 4567888887544333333211
Q ss_pred -----CCceEEEEEE-CCEEEEEeCCCCeEEEEeCccCceeEEEecc
Q psy13635 306 -----LPHVFGISLL-GDYVYWTDWQRRSIDRVNKITGNDREVIIER 346 (357)
Q Consensus 306 -----~~~p~gia~~-~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~ 346 (357)
......+++. .+....+-...+.|+..+..+++....+..+
T Consensus 233 ~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~ 279 (311)
T d1nr0a1 233 KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG 279 (311)
T ss_dssp SSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred ccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECC
Confidence 1234567775 3444444445678888888788877766443
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.46 E-value=0.00012 Score=62.95 Aligned_cols=110 Identities=14% Similarity=-0.012 Sum_probs=77.7
Q ss_pred cCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeC
Q psy13635 116 LITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDT 195 (357)
Q Consensus 116 ~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~ 195 (357)
...|.++++++.++.||++....+.|.++++............. + ......|.++++.+.++.+|++..
T Consensus 33 ~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~--~---------~~~~~~~~~v~~s~dg~~l~~~~~ 101 (337)
T d1pbyb_ 33 GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLST--P---------EERVKSLFGAALSPDGKTLAIYES 101 (337)
T ss_dssp TTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB--T---------TEEEECTTCEEECTTSSEEEEEEE
T ss_pred CCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCC--C---------cccccceeeEEEcCCCcEEEEeec
Confidence 35689999999888899999888999999987654432222111 0 122347889999999999998865
Q ss_pred C-----------CCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEe
Q psy13635 196 G-----------TDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSD 237 (357)
Q Consensus 196 ~-----------~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d 237 (357)
. ...+...+.........+. ....|.++++++.+.++|.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~ 153 (337)
T d1pbyb_ 102 PVRLELTHFEVQPTRVALYDAETLSRRKAFE-APRQITMLAWARDGSKLYGLG 153 (337)
T ss_dssp EEEECSSCEEECCCEEEEEETTTTEEEEEEE-CCSSCCCEEECTTSSCEEEES
T ss_pred CCcceeeeccccccceeeccccCCeEEEecc-ccCCceEEEEcCCCCEEEEEc
Confidence 3 3456666666544433333 346799999999888888875
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.39 E-value=0.0002 Score=60.35 Aligned_cols=244 Identities=13% Similarity=-0.023 Sum_probs=136.6
Q ss_pred CCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCC-----CCEEEEEEcCCCceEEEEe
Q psy13635 82 KSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSE-----TNKLEVSSLDGKKRKVLYW 156 (357)
Q Consensus 82 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~-----~~~I~~~~~~g~~~~~~~~ 156 (357)
+++|.|+.. +.|+.++++|+. ...+..+-....+.++.|.++.|+++... ...|++.+.++...+.+..
T Consensus 12 G~~v~f~~~--~dl~~~d~~~g~----~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~ 85 (281)
T d1k32a2 12 GDRIIFVCC--DDLWEHDLKSGS----TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITY 85 (281)
T ss_dssp TTEEEEEET--TEEEEEETTTCC----EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCC
T ss_pred CCEEEEEeC--CcEEEEECCCCC----EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeee
Confidence 556666533 468888888775 44455554556778899889989876421 1358888988887665532
Q ss_pred cCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCC-----eEEEEEcCCCceEEEecCCCCCceEEEEeCCCC
Q psy13635 157 EDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTD-----RIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHG 231 (357)
Q Consensus 157 ~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~-----~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g 231 (357)
... .. ..........+..+.++.|+++..... .....+.++........ ......... ..+
T Consensus 86 ~~~----~~------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~ 151 (281)
T d1k32a2 86 FSG----KS------TGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNL---GPATHILFA-DGR 151 (281)
T ss_dssp CCE----EE------ETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCS---CSCSEEEEE-TTE
T ss_pred cCC----Cc------cCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecC---Cccceeeec-CCC
Confidence 110 00 011123456677777888888765432 46667777665543322 122233333 334
Q ss_pred EEEEEeCCCC---------CCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeC--CCCeEEEEeCCCCCeEE
Q psy13635 232 YLFWSDWNEK---------RPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDA--KTDKIEMIDFDGNNRRE 300 (357)
Q Consensus 232 ~Ly~~d~~~~---------~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~--~~~~I~~~~~dG~~~~~ 300 (357)
..+....... .................. ............ .+.+++... +...|+.++++|...+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~d~~g~~~~~ 228 (281)
T d1k32a2 152 RVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV-DMSTHVSSPVIV--GHRIYFITDIDGFGQIYSTDLDGKDLRK 228 (281)
T ss_dssp EEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE-CCSSCCEEEEEE--TTEEEEEECTTSSCEEEEEETTSCSCEE
T ss_pred eEEEeeccccceeeeeccCCcceeeeeccccceeecc-CCccccceeeee--ccccceecccccccceEEEeCCCCceEE
Confidence 4433322211 011222222222222222 222222333333 445655543 45689999999998876
Q ss_pred EecCCCCceEEEEEECCEEEEEeCCCCeEEEEeCccCceeEEEecccCCc
Q psy13635 301 LINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVIIERSCTG 350 (357)
Q Consensus 301 i~~~~~~~p~gia~~~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p 350 (357)
+.......+..++.++..|+++. .+.|+.++..+|+...+-+..+..|
T Consensus 229 lt~~~~~~~~~~SpDG~~I~f~~--~~~l~~~d~~~g~~~~i~~~~~~~~ 276 (281)
T d1k32a2 229 HTSFTDYYPRHLNTDGRRILFSK--GGSIYIFNPDTEKIEKIEIGDLESP 276 (281)
T ss_dssp CCCCCSSCEEEEEESSSCEEEEE--TTEEEEECTTTCCEEECCCCCCCBC
T ss_pred eecCCCcccccCcCCCCEEEEEe--CCEEEEEECCCCCEEEeccCCcCCC
Confidence 65433334556778888998875 4689999986677666555455444
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.30 E-value=0.00066 Score=56.96 Aligned_cols=236 Identities=11% Similarity=0.042 Sum_probs=135.3
Q ss_pred eEEEEEeCCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCC-----CeEEEEEcCCCCcceeEEEEeC--
Q psy13635 42 QMLLFATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGT-----EMISCCTFDGNNVGSKHNVITN-- 114 (357)
Q Consensus 42 ~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~-----~~I~~~~~~g~~~~~~~~~~~~-- 114 (357)
..++|+...+|+.+|++++ ..+.+........+..++|++.+|.++.... ..|+.++.+++. ...+..
T Consensus 13 ~~v~f~~~~dl~~~d~~~g-~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~----~~~lt~~~ 87 (281)
T d1k32a2 13 DRIIFVCCDDLWEHDLKSG-STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE----IKRITYFS 87 (281)
T ss_dssp TEEEEEETTEEEEEETTTC-CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE----EEECCCCC
T ss_pred CEEEEEeCCcEEEEECCCC-CEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc----eEEeeecC
Confidence 3588888889999999884 5566666667778889999999998774321 258999998884 332221
Q ss_pred -----CcCCceeEEEEcCCCeEEEEeCCC-----CEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEe
Q psy13635 115 -----GLITPDGLAIDWLTEKLYWTDSET-----NKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVD 184 (357)
Q Consensus 115 -----~~~~p~glavd~~~~~ly~td~~~-----~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD 184 (357)
........+..+.++.|+++.... ..+...+.++...+.... .........
T Consensus 88 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~ 148 (281)
T d1k32a2 88 GKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNL-------------------GPATHILFA 148 (281)
T ss_dssp EEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCS-------------------CSCSEEEEE
T ss_pred CCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecC-------------------Cccceeeec
Confidence 122345677887788888876532 345555655554332210 011122222
Q ss_pred CCCCeEEEE-eCCC----------CeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCC
Q psy13635 185 WVARNLYWT-DTGT----------DRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGG 253 (357)
Q Consensus 185 ~~~~~lY~t-d~~~----------~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~ 253 (357)
.++.++.. .... .................. ....-......+ ..+++.........|+.++++|.
T Consensus 149 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~d~~g~ 224 (281)
T d1k32a2 149 -DGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVD-MSTHVSSPVIVG--HRIYFITDIDGFGQIYSTDLDGK 224 (281)
T ss_dssp -TTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEEC-CSSCCEEEEEET--TEEEEEECTTSSCEEEEEETTSC
T ss_pred -CCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccC-Cccccceeeeec--cccceecccccccceEEEeCCCC
Confidence 23333322 2111 111222222222222222 222233344443 45555544333479999999999
Q ss_pred ceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCce
Q psy13635 254 ERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHV 309 (357)
Q Consensus 254 ~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p 309 (357)
..+.+....-..+.. +.+++.+|+++. .+.|+.+++++...+.+....+..|
T Consensus 225 ~~~~lt~~~~~~~~~--~SpDG~~I~f~~--~~~l~~~d~~~g~~~~i~~~~~~~~ 276 (281)
T d1k32a2 225 DLRKHTSFTDYYPRH--LNTDGRRILFSK--GGSIYIFNPDTEKIEKIEIGDLESP 276 (281)
T ss_dssp SCEECCCCCSSCEEE--EEESSSCEEEEE--TTEEEEECTTTCCEEECCCCCCCBC
T ss_pred ceEEeecCCCccccc--CcCCCCEEEEEe--CCEEEEEECCCCCEEEeccCCcCCC
Confidence 888775443333333 445688888876 4579999999888777655444443
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.22 E-value=0.00011 Score=64.13 Aligned_cols=265 Identities=7% Similarity=-0.069 Sum_probs=134.6
Q ss_pred eecCCCCeEEEEEeC-----------CcEEEEEcCCCCcceEec-------cCCCcEEEEEEEccCCEEEEEeCCCC-eE
Q psy13635 35 LSHHVAAQMLLFATS-----------KDIRIANLSRPLKPVTII-------KDLEEGAAIDYYYKKSMVCWTDHGTE-MI 95 (357)
Q Consensus 35 ~~~~~~~~~l~~~~~-----------~~i~~~~~~~~~~~~~~~-------~~~~~~~~i~~d~~~~~ly~~d~~~~-~I 95 (357)
++-+++..+|++++. +.|+.+|+.+......+. .....|.++++.+.++.+|+++...+ .+
T Consensus 52 ~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~ 131 (355)
T d2bbkh_ 52 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV 131 (355)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred eEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCcee
Confidence 344555566776652 358889987643222221 12335678899999999999887554 45
Q ss_pred EEEEcCCCCcceeEEEEeCC-------cCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeee
Q psy13635 96 SCCTFDGNNVGSKHNVITNG-------LITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASY 168 (357)
Q Consensus 96 ~~~~~~g~~~~~~~~~~~~~-------~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~ 168 (357)
...+..+.. ....+... ...+..+++...++.+++.....+.+.+.+....... ....+..
T Consensus 132 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~--------~~~~~~~- 199 (355)
T d2bbkh_ 132 GVVDLEGKA---FKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE--------DEFLINH- 199 (355)
T ss_dssp EEEETTTTE---EEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT--------TSCBCSC-
T ss_pred eeeecCCCc---EeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccce--------ecceeee-
Confidence 555555442 12222111 1233446666666666666655555444433221100 0000000
Q ss_pred ccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCC--CCCceEEEEeCCCCEEEEEeCCCC-----
Q psy13635 169 KLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTD--LVEPRAITLSPAHGYLFWSDWNEK----- 241 (357)
Q Consensus 169 ~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~--~~~P~giavd~~~g~Ly~~d~~~~----- 241 (357)
......+..++....++++|+.+...+.+...+............. ...+..+++++....+|++.....
T Consensus 200 ---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 276 (355)
T d2bbkh_ 200 ---PAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHK 276 (355)
T ss_dssp ---CEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTT
T ss_pred ---ccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeec
Confidence 0001122233333334444444444333332221100000000000 123456899998889999864421
Q ss_pred --CCeEEEEecCCCceEEEeeCCCCCceEEEEecCCC-EEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEE
Q psy13635 242 --RPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNE-KLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLL 315 (357)
Q Consensus 242 --~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~-~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~ 315 (357)
...|...+.........+.. -..|.++++.+++. .+|++....+.|..+|.........+......|..|++.
T Consensus 277 ~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~ 352 (355)
T d2bbkh_ 277 TASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTA 352 (355)
T ss_dssp SCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECC
T ss_pred CCCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeC
Confidence 13677777765443322221 24588999987655 378888888999999985433333333345667766553
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=0.0015 Score=56.60 Aligned_cols=272 Identities=8% Similarity=-0.003 Sum_probs=159.2
Q ss_pred EEeecCCCCeEEEEEeCCcEEEEEcCCCCcc---eEe--ccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcce
Q psy13635 33 YALSHHVAAQMLLFATSKDIRIANLSRPLKP---VTI--IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGS 107 (357)
Q Consensus 33 ~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~---~~~--~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~ 107 (357)
.|++-++...+|+-.....|+..|+...... ... ...-.....+++.+.++.|..+ ..++.|...++..... .
T Consensus 55 ~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~-~~dg~i~iwd~~~~~~-~ 132 (337)
T d1gxra_ 55 CAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVG-GEASTLSIWDLAAPTP-R 132 (337)
T ss_dssp CEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEE-ESSSEEEEEECCCC---E
T ss_pred EEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEe-eccccccccccccccc-c
Confidence 3444566667777776667888998753221 111 1223457899999877766544 4567888888775531 1
Q ss_pred eEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCC
Q psy13635 108 KHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVA 187 (357)
Q Consensus 108 ~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~ 187 (357)
....+.........+++++.+ .+.++....+.|...++........... .......+++.+.+
T Consensus 133 ~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~~~~~~~~~~~~~~----------------~~~~v~~l~~s~~~ 195 (337)
T d1gxra_ 133 IKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVRQFQG----------------HTDGASCIDISNDG 195 (337)
T ss_dssp EEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECC----------------CSSCEEEEEECTTS
T ss_pred ccccccccccccccccccccc-cccccccccccccccccccccccccccc----------------cccccccccccccc
Confidence 122333334455677888644 4445555677888888876544333211 11245677787666
Q ss_pred CeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCce
Q psy13635 188 RNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPN 267 (357)
Q Consensus 188 ~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~ 267 (357)
..++.+.. .+.|...++.......... ....+..++++|.+..|+.+... +.|...+++........ ..-....
T Consensus 196 ~~~~~~~~-d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~-~~~~~i~ 269 (337)
T d1gxra_ 196 TKLWTGGL-DNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMES---SNVEVLHVNKPDKYQLH-LHESCVL 269 (337)
T ss_dssp SEEEEEET-TSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETT---SCEEEEETTSSCEEEEC-CCSSCEE
T ss_pred cccccccc-cccccccccccceeecccc-cccceEEEEEcccccccceeccc---ccccccccccccccccc-ccccccc
Confidence 66665544 4678888876443322221 23467899999987777766654 57888888766554432 2234568
Q ss_pred EEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEEC-CEEEEEeCCCCeEEE
Q psy13635 268 GITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLG-DYVYWTDWQRRSIDR 331 (357)
Q Consensus 268 giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~~-~~ly~td~~~~~I~~ 331 (357)
++++.+.+..| ++-...+.|...+.......... ........+++.. +...++-...+.|..
T Consensus 270 ~v~~s~~g~~l-~s~s~Dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~t~s~D~~I~v 332 (337)
T d1gxra_ 270 SLKFAYCGKWF-VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATV 332 (337)
T ss_dssp EEEECTTSSEE-EEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred eEEECCCCCEE-EEEeCCCeEEEEECCCCCEEEEc-cCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 89998655544 44445678888887544332222 2334566777752 443444344455543
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.09 E-value=0.0019 Score=53.85 Aligned_cols=228 Identities=11% Similarity=0.087 Sum_probs=138.7
Q ss_pred cEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCC--CeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCC
Q psy13635 51 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGT--EMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 128 (357)
Q Consensus 51 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~--~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~ 128 (357)
+|+.+|.+| .....+..........+++|++.+|.++.... ..++..+.++.. ...+......+.....++.+
T Consensus 20 ~l~i~d~dG-~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~spdg 94 (269)
T d2hqsa1 20 ELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDG 94 (269)
T ss_dssp EEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC----EEEEECCSSCEEEEEECTTS
T ss_pred EEEEEcCCC-CCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc----eeEEeeeecccccceecCCC
Confidence 688999988 45555555556667789999999997665443 367888888775 55555555667777888877
Q ss_pred CeEEEEeCCCC--EEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCC--CeEEEEE
Q psy13635 129 EKLYWTDSETN--KLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGT--DRIEVCR 204 (357)
Q Consensus 129 ~~ly~td~~~~--~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~--~~I~~~~ 204 (357)
..+.+.....+ .+............... ...........+..+.++++.... ..|...+
T Consensus 95 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~ 157 (269)
T d2hqsa1 95 SKLAFALSKTGSLNLYVMDLASGQIRQVTD-----------------GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN 157 (269)
T ss_dssp SEEEEEECTTSSCEEEEEETTTCCEEECCC-----------------CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CeeeEeeecCCccceeecccccccceeeee-----------------ccccccccccccccccceecccccCCceEeeee
Confidence 77766543322 22222222211111100 001111223334455666665433 3788888
Q ss_pred cCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeC-
Q psy13635 205 LEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDA- 283 (357)
Q Consensus 205 ~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~- 283 (357)
.++.....+.. .........+.|....+++.........|...+.++...+.+... ..-....+.+++.+|+++..
T Consensus 158 ~~~~~~~~~~~-~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~p~~SPDG~~i~f~s~~ 234 (269)
T d2hqsa1 158 INGGAPQRITW-EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSST--FLDETPSLAPNGTMVIYSSSQ 234 (269)
T ss_dssp TTSSCCEECCC-SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCS--SSCEEEEECTTSSEEEEEEEE
T ss_pred cccccceeeec-ccccccccccccccceeEEEeecCCceeeeEeecccccceEeecC--ccccceEECCCCCEEEEEEcC
Confidence 88876655543 233445667888877777776654445787888777765544322 22245578888888866543
Q ss_pred -CCCeEEEEeCCCCCeEEEec
Q psy13635 284 -KTDKIEMIDFDGNNRRELIN 303 (357)
Q Consensus 284 -~~~~I~~~~~dG~~~~~i~~ 303 (357)
+...++.++.+|...+.+..
T Consensus 235 ~~~~~l~~~~~dg~~~~~lt~ 255 (269)
T d2hqsa1 235 GMGSVLNLVSTDGRFKARLPA 255 (269)
T ss_dssp TTEEEEEEEETTSCCEEECCC
T ss_pred CCCcEEEEEECCCCCEEEEeC
Confidence 34578899999988765543
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.04 E-value=0.003 Score=54.35 Aligned_cols=176 Identities=9% Similarity=0.064 Sum_probs=118.8
Q ss_pred CCeEEEEEeCCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCC-CeEEEEEcCCCCcceeEEEEeCCcCC
Q psy13635 40 AAQMLLFATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGT-EMISCCTFDGNNVGSKHNVITNGLIT 118 (357)
Q Consensus 40 ~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~ 118 (357)
+...+.++.+.+|+..|+.++ .... +.......++.|++++..|+++...+ +.|+..+.++.. ...+......
T Consensus 14 dG~~~a~~~~g~v~v~d~~~~-~~~~-~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~----~~~~~~~~~~ 87 (360)
T d1k32a3 14 DGDLIAFVSRGQAFIQDVSGT-YVLK-VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK----AEKFEENLGN 87 (360)
T ss_dssp GGGCEEEEETTEEEEECTTSS-BEEE-CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC----EEECCCCCCS
T ss_pred CCCEEEEEECCeEEEEECCCC-cEEE-ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc----EEEeeCCCce
Confidence 344567777888999999773 3333 35566789999999888887765444 467888888764 4555566677
Q ss_pred ceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCC-
Q psy13635 119 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGT- 197 (357)
Q Consensus 119 p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~- 197 (357)
+..+++.+.++.|..+. ..+.+...+.++.....+..... ....++++.+.+..|.++....
T Consensus 88 v~~~~~spdg~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~spdg~~la~~~~~~~ 150 (360)
T d1k32a3 88 VFAMGVDRNGKFAVVAN-DRFEIMTVDLETGKPTVIERSRE----------------AMITDFTISDNSRFIAYGFPLKH 150 (360)
T ss_dssp EEEEEECTTSSEEEEEE-TTSEEEEEETTTCCEEEEEECSS----------------SCCCCEEECTTSCEEEEEEEECS
T ss_pred EEeeeecccccccceec-cccccccccccccceeeeeeccc----------------ccccchhhccceeeeeeeccccc
Confidence 88999998666666554 56788888988776655543221 2456678877777777664221
Q ss_pred --------CeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCC
Q psy13635 198 --------DRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWN 239 (357)
Q Consensus 198 --------~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~ 239 (357)
..+...+..+.....+.. ......++++.|.+.+|++....
T Consensus 151 ~~~~~~~~~~~~v~d~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~s~~ 199 (360)
T d1k32a3 151 GETDGYVMQAIHVYDMEGRKIFAATT-ENSHDYAPAFDADSKNLYYLSYR 199 (360)
T ss_dssp STTCSCCEEEEEEEETTTTEEEECSC-SSSBEEEEEECTTSCEEEEEESC
T ss_pred cceeeccccceeeeccccCceeeecc-cccccccccccCCCCEEEEEeCC
Confidence 256677777665544433 33456778899887788876543
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=0.0032 Score=54.40 Aligned_cols=251 Identities=10% Similarity=-0.029 Sum_probs=150.4
Q ss_pred CCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEE-Ee-CCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEc
Q psy13635 69 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV-IT-NGLITPDGLAIDWLTEKLYWTDSETNKLEVSSL 146 (357)
Q Consensus 69 ~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~-~~-~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~ 146 (357)
......+++|++.+..|+-. .++.|...++........... .. ..-.....+++.+.++.| ++-...+.|...++
T Consensus 50 H~~~V~~v~fs~~g~~latg--~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l-~s~~~dg~i~iwd~ 126 (337)
T d1gxra_ 50 HGEVVCAVTISNPTRHVYTG--GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTL-IVGGEASTLSIWDL 126 (337)
T ss_dssp CSSCCCEEEECSSSSEEEEE--CBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEE-EEEESSSEEEEEEC
T ss_pred CCCcEEEEEECCCCCEEEEE--ECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEE-EEeecccccccccc
Confidence 34567889999876666543 367888888765432111111 11 222346789998765555 44455789999888
Q ss_pred CCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEE
Q psy13635 147 DGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITL 226 (357)
Q Consensus 147 ~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giav 226 (357)
.....+...... ........+++++.+..+ ++....+.|...+...................+++
T Consensus 127 ~~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~l-~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~ 191 (337)
T d1gxra_ 127 AAPTPRIKAELT--------------SSAPACYALAISPDSKVC-FSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI 191 (337)
T ss_dssp CCC--EEEEEEE--------------CSSSCEEEEEECTTSSEE-EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred cccccccccccc--------------cccccccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence 765433322110 011133456677554444 45555568888888766555544444456788999
Q ss_pred eCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCC
Q psy13635 227 SPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENL 306 (357)
Q Consensus 227 d~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~ 306 (357)
++.+..++.+... +.|...++.......... .-..+..+++++.+..|+.+. ..+.|...+.+........ ..-
T Consensus 192 s~~~~~~~~~~~d---~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~-~~~ 265 (337)
T d1gxra_ 192 SNDGTKLWTGGLD---NTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKPDKYQLH-LHE 265 (337)
T ss_dssp CTTSSEEEEEETT---SEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTSSCEEEEC-CCS
T ss_pred ccccccccccccc---ccccccccccceeecccc-cccceEEEEEcccccccceec-ccccccccccccccccccc-ccc
Confidence 9877777777655 578777776554433332 234568899987666666554 4678888888776654332 233
Q ss_pred CceEEEEEE-CCEEEEEeCCCCeEEEEeCccCceeEEE
Q psy13635 307 PHVFGISLL-GDYVYWTDWQRRSIDRVNKITGNDREVI 343 (357)
Q Consensus 307 ~~p~gia~~-~~~ly~td~~~~~I~~~~~~~g~~~~~i 343 (357)
....++++. .+..+++-...+.|...+..+++....+
T Consensus 266 ~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~ 303 (337)
T d1gxra_ 266 SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS 303 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred cccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc
Confidence 455677775 3444555455577877777666665443
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=97.95 E-value=0.0039 Score=54.82 Aligned_cols=219 Identities=13% Similarity=0.156 Sum_probs=127.0
Q ss_pred EccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEc----CC---CeEEEEeCC--CCEEEEEEcCCC
Q psy13635 79 YYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDW----LT---EKLYWTDSE--TNKLEVSSLDGK 149 (357)
Q Consensus 79 d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~----~~---~~ly~td~~--~~~I~~~~~~g~ 149 (357)
+|....|+-||...+ |+..+++|.. ...+ ....+..+.+=. .+ ..++.++.. ..+|..+..++.
T Consensus 37 ~p~~SlI~gTdK~~G-l~vYdL~G~~----l~~~--~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~ 109 (353)
T d1h6la_ 37 NPQNSKLITTNKKSG-LAVYSLEGKM----LHSY--HTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGK 109 (353)
T ss_dssp CGGGCEEEEEETTSC-CEEEETTCCE----EEEC--CSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETT
T ss_pred CcCccEEEEEcCcCC-EEEEcCCCcE----EEec--ccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCc
Confidence 344567777777654 8999998874 2222 233455444320 01 124556654 356666655544
Q ss_pred ceEEEEecCCCCcceeeeeccCcccccCCceEEE--eCCCCeEEEE-eCCCCeEEEEEc--CC--CceEEEec--CCCCC
Q psy13635 150 KRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAV--DWVARNLYWT-DTGTDRIEVCRL--EG--THRKVLVN--TDLVE 220 (357)
Q Consensus 150 ~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glav--D~~~~~lY~t-d~~~~~I~~~~~--~g--~~~~~~~~--~~~~~ 220 (357)
............|. ......|.|+++ ++.++.+|.. ....+++++..+ ++ .....++. ..-..
T Consensus 110 ~~~l~~~~~~~~p~--------~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q 181 (353)
T d1h6la_ 110 NGTLQSITDPNRPI--------ASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQ 181 (353)
T ss_dssp TTEEEECSCSSSCE--------ECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSC
T ss_pred cccccccccccccc--------ccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCc
Confidence 32221111111111 123356899998 7778876533 333456665443 33 22222211 12357
Q ss_pred ceEEEEeCCCCEEEEEeCCCCCCeEEEEecC---CCceEEEeeC---C-CCCceEEEEec---CCCEEEEEeCCCCeEEE
Q psy13635 221 PRAITLSPAHGYLFWSDWNEKRPKIERSLLN---GGERVLLVKD---R-LGWPNGITLDV---DNEKLYWCDAKTDKIEM 290 (357)
Q Consensus 221 P~giavd~~~g~Ly~~d~~~~~~~I~~~~~d---g~~~~~~~~~---~-l~~P~giaid~---~~~~lY~~d~~~~~I~~ 290 (357)
+.|+++|..+++||+++.. ..|++.+.+ +.....+... . ...|.||++=. .+|.|.+++.+.++...
T Consensus 182 ~EGCVvDde~~~LyisEE~---~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~v 258 (353)
T d1h6la_ 182 TEGMAADDEYGSLYIAEED---EAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAI 258 (353)
T ss_dssp EEEEEEETTTTEEEEEETT---TEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEE
T ss_pred cceEEEeCCCCcEEEecCc---cceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEE
Confidence 8999999999999999987 488998875 2333333322 1 34689999853 25799999999999999
Q ss_pred EeCCCCC----eEEEecC----CCCceEEEEEE
Q psy13635 291 IDFDGNN----RRELINE----NLPHVFGISLL 315 (357)
Q Consensus 291 ~~~dG~~----~~~i~~~----~~~~p~gia~~ 315 (357)
++..+.. ...+... ...++.||++.
T Consensus 259 ydr~~~~~~~g~F~i~~~~~iDgvs~TDGi~v~ 291 (353)
T d1h6la_ 259 YERQGQNKYVADFQITDGPETDGTSDTDGIDVL 291 (353)
T ss_dssp EESSTTCCEEEEEEECCCSSSCCCCSCCCEEEE
T ss_pred EecCCCccccceEEEecCCCcCccccCchheEE
Confidence 9886642 1223221 24577777764
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.93 E-value=0.0039 Score=53.76 Aligned_cols=261 Identities=10% Similarity=0.030 Sum_probs=140.0
Q ss_pred CCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcC-CCeEEEEeCCCCEEEEEEcCC
Q psy13635 70 LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL-TEKLYWTDSETNKLEVSSLDG 148 (357)
Q Consensus 70 ~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~-~~~ly~td~~~~~I~~~~~~g 148 (357)
...+..+++++.++.|-++......|+..+..............+.-.....+++.|. ++.+..+-..+++|...+...
T Consensus 17 ~~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~ 96 (325)
T d1pgua1 17 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF 96 (325)
T ss_dssp TTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecC
Confidence 3467788999988888777544333433332222111112222222345778889764 445656666778888776532
Q ss_pred Cce--E--EEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC-CCeEEEEEcCCCceEEEecCCCCCceE
Q psy13635 149 KKR--K--VLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG-TDRIEVCRLEGTHRKVLVNTDLVEPRA 223 (357)
Q Consensus 149 ~~~--~--~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~-~~~I~~~~~~g~~~~~~~~~~~~~P~g 223 (357)
... . ....... .........+++.+.+..|..+..+ ...+...+.+.......+.........
T Consensus 97 ~~~~~~~~~~~~~~~------------~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 164 (325)
T d1pgua1 97 DKESNSVEVNVKSEF------------QVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINA 164 (325)
T ss_dssp EGGGTEEEEEEEEEE------------ECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEE
T ss_pred Ccceeeeeccccccc------------ccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeeccccccc
Confidence 111 1 1000000 0001123567777666666655443 345666776643332333333345678
Q ss_pred EEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeC---CCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEE
Q psy13635 224 ITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKD---RLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRE 300 (357)
Q Consensus 224 iavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~---~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~ 300 (357)
++++|.+..+..+-... +.+...+............ ......++++.+..+.++++-...+.|...+........
T Consensus 165 ~~~~~~~~~~~~~~~~d--~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~ 242 (325)
T d1pgua1 165 CHLKQSRPMRSMTVGDD--GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK 242 (325)
T ss_dssp EEECSSSSCEEEEEETT--TEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEE
T ss_pred ccccccccceEEEeecc--cccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccc
Confidence 99998766666655442 4666666543333222211 123357899987777887777777889988875433323
Q ss_pred EecCCCCc----eEEEEEECCEEEEEeCCCCeEEEEeCccCceeEEEe
Q psy13635 301 LINENLPH----VFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVII 344 (357)
Q Consensus 301 i~~~~~~~----p~gia~~~~~ly~td~~~~~I~~~~~~~g~~~~~i~ 344 (357)
.+...-.. .+.++..++..+.+-...+.|...+..+++....+.
T Consensus 243 ~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~ 290 (325)
T d1pgua1 243 YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT 290 (325)
T ss_dssp ECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred cccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEE
Confidence 33211111 233333345455555566778777876777666553
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.90 E-value=0.0008 Score=58.22 Aligned_cols=182 Identities=10% Similarity=0.007 Sum_probs=115.2
Q ss_pred EEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCC-CEEEEEEcCCCceEEE
Q psy13635 76 IDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSET-NKLEVSSLDGKKRKVL 154 (357)
Q Consensus 76 i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~-~~I~~~~~~g~~~~~~ 154 (357)
-+|.|.+|+++-+. ..+.|+..+.+++. ...+. .-..+..+++.+.++.|+++.... ..|...+.++...+.+
T Consensus 8 ~~fSP~dG~~~a~~-~~g~v~v~d~~~~~----~~~~~-~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~ 81 (360)
T d1k32a3 8 EDFSPLDGDLIAFV-SRGQAFIQDVSGTY----VLKVP-EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKF 81 (360)
T ss_dssp EEEEECGGGCEEEE-ETTEEEEECTTSSB----EEECS-CCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEEC
T ss_pred ccccCCCCCEEEEE-ECCeEEEEECCCCc----EEEcc-CCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEe
Confidence 56777444333322 23577777777663 22222 334678999999888887765443 4678888887765544
Q ss_pred EecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEE
Q psy13635 155 YWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLF 234 (357)
Q Consensus 155 ~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly 234 (357)
.. ....+..+++.+.+..|..+. ..+.+...+.++.....+..........+++.|.+..|.
T Consensus 82 ~~-----------------~~~~v~~~~~spdg~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la 143 (360)
T d1k32a3 82 EE-----------------NLGNVFAMGVDRNGKFAVVAN-DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIA 143 (360)
T ss_dssp CC-----------------CCCSEEEEEECTTSSEEEEEE-TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEE
T ss_pred eC-----------------CCceEEeeeecccccccceec-cccccccccccccceeeeeecccccccchhhccceeeee
Confidence 21 123467888988776666554 456788888887776666555555677899999877888
Q ss_pred EEeCCCC-------CCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEe
Q psy13635 235 WSDWNEK-------RPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCD 282 (357)
Q Consensus 235 ~~d~~~~-------~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d 282 (357)
++..... ...+...+..+.....+. .......++++.+.+..|++..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~s 197 (360)
T d1k32a3 144 YGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDADSKNLYYLS 197 (360)
T ss_dssp EEEEECSSTTCSCCEEEEEEEETTTTEEEECS-CSSSBEEEEEECTTSCEEEEEE
T ss_pred eeccccccceeeccccceeeeccccCceeeec-ccccccccccccCCCCEEEEEe
Confidence 7753321 234666677665444433 3334456778887777777654
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.88 E-value=0.0046 Score=51.34 Aligned_cols=227 Identities=15% Similarity=0.127 Sum_probs=126.1
Q ss_pred eEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCC--CCEEEEEEcCCCceEEEEecCCCCcceeeeeccC
Q psy13635 94 MISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSE--TNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLP 171 (357)
Q Consensus 94 ~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~--~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~ 171 (357)
.|+.++.+|+. ...+..+.......++.|.+++|.++... ...+...+.++...+.+....
T Consensus 20 ~l~i~d~dG~~----~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 82 (269)
T d2hqsa1 20 ELRVSDYDGYN----QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP------------- 82 (269)
T ss_dssp EEEEEETTSCS----CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCS-------------
T ss_pred EEEEEcCCCCC----cEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeee-------------
Confidence 47777788876 44444344444567899999999776543 346777788877766554221
Q ss_pred cccccCCceEEEeCCCCeEEEEeCCCC--eEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEe
Q psy13635 172 TIEVEHPDGVAVDWVARNLYWTDTGTD--RIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSL 249 (357)
Q Consensus 172 ~~~~~~p~glavD~~~~~lY~td~~~~--~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~ 249 (357)
.........+.+..+.+.....+ .+............. .............+....++++........|+..+
T Consensus 83 ----~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~ 157 (269)
T d2hqsa1 83 ----RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN 157 (269)
T ss_dssp ----SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEC-CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ----cccccceecCCCCeeeEeeecCCccceeecccccccceee-eeccccccccccccccccceecccccCCceEeeee
Confidence 13344556666666655544333 222222222222222 12223333444555566677766543346899999
Q ss_pred cCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCC--CeEEEEeCCCCCeEEEecCCCCceEEEEE--ECCEEEEEeCC
Q psy13635 250 LNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKT--DKIEMIDFDGNNRRELINENLPHVFGISL--LGDYVYWTDWQ 325 (357)
Q Consensus 250 ~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~--~~I~~~~~dG~~~~~i~~~~~~~p~gia~--~~~~ly~td~~ 325 (357)
.++.....+... ........+.+.+..+++..... ..|...+.++...+.+.. .... ....+ ++..|+++...
T Consensus 158 ~~~~~~~~~~~~-~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~-~~p~~SPDG~~i~f~s~~ 234 (269)
T d2hqsa1 158 INGGAPQRITWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSS-TFLD-ETPSLAPNGTMVIYSSSQ 234 (269)
T ss_dssp TTSSCCEECCCS-SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCC-SSSC-EEEEECTTSSEEEEEEEE
T ss_pred cccccceeeecc-cccccccccccccceeEEEeecCCceeeeEeecccccceEeec-Cccc-cceEECCCCCEEEEEEcC
Confidence 988766655432 23334456666777777665433 456667766665543322 2211 22233 46777665433
Q ss_pred --CCeEEEEeCccCceeEEEecc
Q psy13635 326 --RRSIDRVNKITGNDREVIIER 346 (357)
Q Consensus 326 --~~~I~~~~~~~g~~~~~i~~~ 346 (357)
...|+.++. +|+..+.+...
T Consensus 235 ~~~~~l~~~~~-dg~~~~~lt~~ 256 (269)
T d2hqsa1 235 GMGSVLNLVST-DGRFKARLPAT 256 (269)
T ss_dssp TTEEEEEEEET-TSCCEEECCCS
T ss_pred CCCcEEEEEEC-CCCCEEEEeCC
Confidence 245888888 56666555554
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=97.77 E-value=0.0044 Score=54.49 Aligned_cols=195 Identities=15% Similarity=0.156 Sum_probs=110.6
Q ss_pred cCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCC-CeEEEEeCCC--CeEEE
Q psy13635 126 WLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVA-RNLYWTDTGT--DRIEV 202 (357)
Q Consensus 126 ~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~-~~lY~td~~~--~~I~~ 202 (357)
|....|+=||...+ |++++++|+....+- .+++..+-+ -.++.++-.. ..++.++... .+|..
T Consensus 38 p~~SlI~gTdK~~G-l~vYdL~G~~l~~~~---~Gr~NNVDv----------r~~~~l~~~~~di~vasnR~~~~~~l~~ 103 (353)
T d1h6la_ 38 PQNSKLITTNKKSG-LAVYSLEGKMLHSYH---TGKLNNVDI----------RYDFPLNGKKVDIAAASNRSEGKNTIEI 103 (353)
T ss_dssp GGGCEEEEEETTSC-CEEEETTCCEEEECC---SSCEEEEEE----------EEEEEETTEEEEEEEEEECCTTTCEEEE
T ss_pred cCccEEEEEcCcCC-EEEEcCCCcEEEecc---cCCcCcccc----------ccccccCCcceEEEEEeCCcCcceeEEE
Confidence 33445566776555 888899888776541 122222221 1122221111 1345566542 35544
Q ss_pred EEcC--CCceEEEec------CCCCCceEEEE--eCCCCEEEEEeCCCCCCeEEEEec--CCCc--eEEEee--CCCCCc
Q psy13635 203 CRLE--GTHRKVLVN------TDLVEPRAITL--SPAHGYLFWSDWNEKRPKIERSLL--NGGE--RVLLVK--DRLGWP 266 (357)
Q Consensus 203 ~~~~--g~~~~~~~~------~~~~~P~giav--d~~~g~Ly~~d~~~~~~~I~~~~~--dg~~--~~~~~~--~~l~~P 266 (357)
...+ +.....+.. ..+..|+|+++ ++.+|.+|..-.... +.+....+ ++.. ...++. ..-..+
T Consensus 104 ~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~-G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~ 182 (353)
T d1h6la_ 104 YAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKE-GEFEQYELNADKNGYISGKKVRAFKMNSQT 182 (353)
T ss_dssp EEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSS-SEEEEEEEEECTTSSEEEEEEEEEECSSCE
T ss_pred EEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCC-ceEEEEEEEcCCCCceeeEeeeccCCCCcc
Confidence 4443 322222211 23457899999 777786665444332 56655443 3332 112211 123568
Q ss_pred eEEEEecCCCEEEEEeCCCCeEEEEeCC--C-CCeEEEec---C-CCCceEEEEEE-----CCEEEEEeCCCCeEEEEeC
Q psy13635 267 NGITLDVDNEKLYWCDAKTDKIEMIDFD--G-NNRRELIN---E-NLPHVFGISLL-----GDYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 267 ~giaid~~~~~lY~~d~~~~~I~~~~~d--G-~~~~~i~~---~-~~~~p~gia~~-----~~~ly~td~~~~~I~~~~~ 334 (357)
.|.++|...++||+++... .|++++.+ + .....+.. . -...|.||++. +|+|.+++.+.++...+++
T Consensus 183 EGCVvDde~~~LyisEE~~-Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr 261 (353)
T d1h6la_ 183 EGMAADDEYGSLYIAEEDE-AIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYER 261 (353)
T ss_dssp EEEEEETTTTEEEEEETTT-EEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred ceEEEeCCCCcEEEecCcc-ceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEec
Confidence 8999999999999999854 78888764 2 23333322 1 23479999986 3689999999899888886
Q ss_pred cc
Q psy13635 335 IT 336 (357)
Q Consensus 335 ~~ 336 (357)
.+
T Consensus 262 ~~ 263 (353)
T d1h6la_ 262 QG 263 (353)
T ss_dssp ST
T ss_pred CC
Confidence 43
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.76 E-value=0.0073 Score=50.66 Aligned_cols=247 Identities=14% Similarity=0.080 Sum_probs=138.2
Q ss_pred CCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeC-CcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcC
Q psy13635 69 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN-GLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD 147 (357)
Q Consensus 69 ~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~-~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~ 147 (357)
......++++++.+..| .+-..++.|...+++... ....... .-....++++.+ ++.++.+.. .+.+...+..
T Consensus 11 H~~~V~~l~~s~dg~~l-~s~s~Dg~v~vWd~~~~~---~~~~~~~~h~~~v~~v~~~~-~g~~~~~~~-d~~v~~~~~~ 84 (299)
T d1nr0a2 11 HNKAITALSSSADGKTL-FSADAEGHINSWDISTGI---SNRVFPDVHATMITGIKTTS-KGDLFTVSW-DDHLKVVPAG 84 (299)
T ss_dssp CSSCEEEEEECTTSSEE-EEEETTSCEEEEETTTCC---EEECSSCSCSSCEEEEEECT-TSCEEEEET-TTEEEEECSS
T ss_pred CCCCcEEEEECCCCCEE-EEEcCCCeEEEEECCCCc---EEEEEcCCCCCcEEEEEeec-cceeecccc-eeeEEEeccC
Confidence 44567889998865544 455556788888887653 1222222 234467888886 456665543 5677777765
Q ss_pred CCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEe
Q psy13635 148 GKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLS 227 (357)
Q Consensus 148 g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd 227 (357)
+...... .... ......+.++++.+.+..+..+.. +.+...+. ++..... ....+..++++
T Consensus 85 ~~~~~~~--------~~~~-----~~~~~~~~~~~~s~~g~~~~~~~~--~~i~~~~~-~~~~~~~---~~~~~~~~~~s 145 (299)
T d1nr0a2 85 GSGVDSS--------KAVA-----NKLSSQPLGLAVSADGDIAVAACY--KHIAIYSH-GKLTEVP---ISYNSSCVALS 145 (299)
T ss_dssp SSSSCTT--------SCCE-----EECSSCEEEEEECTTSSCEEEEES--SEEEEEET-TEEEEEE---CSSCEEEEEEC
T ss_pred Ccccccc--------cccc-----cccccccccccccccccccccccc--cccccccc-ccccccc---ccccccccccc
Confidence 5422100 0000 011135667788765555554433 34555542 2222222 22457788999
Q ss_pred CCCCEEEEEeCCCCCCeEEEEecCCCceEEEe-eCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecC--
Q psy13635 228 PAHGYLFWSDWNEKRPKIERSLLNGGERVLLV-KDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINE-- 304 (357)
Q Consensus 228 ~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~-~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~-- 304 (357)
|....|+..... +.|...++.+.....+. ...-.....+++++.+..|+.+. ..+.|...+............
T Consensus 146 ~~~~~l~~g~~d---g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~~~~~~~~ 221 (299)
T d1nr0a2 146 NDKQFVAVGGQD---SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATD-QSRKVIPYSVANNFELAHTNSWT 221 (299)
T ss_dssp TTSCEEEEEETT---SEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEE-TTSCEEEEEGGGTTEESCCCCCC
T ss_pred cccccccccccc---ccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc
Confidence 876666665544 57888887765543322 22234568999987666666554 456788888754332211111
Q ss_pred -CCCceEEEEEE-CCEEEEEeCCCCeEEEEeCccCceeEEEe
Q psy13635 305 -NLPHVFGISLL-GDYVYWTDWQRRSIDRVNKITGNDREVII 344 (357)
Q Consensus 305 -~~~~p~gia~~-~~~ly~td~~~~~I~~~~~~~g~~~~~i~ 344 (357)
.......+++. ++..+++-...+.|...+..+++....+.
T Consensus 222 ~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~ 263 (299)
T d1nr0a2 222 FHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIII 263 (299)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEE
T ss_pred ccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEE
Confidence 12234667776 35555555556788887776666554443
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.70 E-value=0.011 Score=50.08 Aligned_cols=274 Identities=7% Similarity=-0.020 Sum_probs=140.5
Q ss_pred EeecCCCCeEEEEEeC-CcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEE
Q psy13635 34 ALSHHVAAQMLLFATS-KDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI 112 (357)
Q Consensus 34 ~~~~~~~~~~l~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~ 112 (357)
|++-++...+|+-+.. ..|+..|+............-.....+++++.+..++.+. .++.+...+.............
T Consensus 60 ~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~~~~~~~ 138 (340)
T d1tbga_ 60 AMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG-LDNICSIYNLKTREGNVRVSRE 138 (340)
T ss_dssp EEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEE-TTCCEEEEESSSSCSCCCEEEE
T ss_pred EEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeec-ccceeeccccccccccccccee
Confidence 3344555666666654 5688999876443333334455688999998766666554 3455665555443211111111
Q ss_pred eCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEE
Q psy13635 113 TNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYW 192 (357)
Q Consensus 113 ~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~ 192 (357)
..+...............+.... ....................... ......... ..+.+++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~-~~~~~~~ 200 (340)
T d1tbga_ 139 LAGHTGYLSCCRFLDDNQIVTSS-GDTTCALWDIETGQQTTTFTGHT----------------GDVMSLSLA-PDTRLFV 200 (340)
T ss_dssp ECCCSSCEEEEEEEETTEEEEEE-TTTEEEEEETTTTEEEEEEECCS----------------SCEEEEEEC-TTSSEEE
T ss_pred ccccccccccccccccccccccc-ccccccccccccccccccccccc----------------eeEeeeccc-cccceeE
Confidence 12222222222222233333333 23333333333322222111110 011222223 3445666
Q ss_pred EeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCC--CCCceEEE
Q psy13635 193 TDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDR--LGWPNGIT 270 (357)
Q Consensus 193 td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~--l~~P~gia 270 (357)
+....+.|...+...................++++|.+..|+.+... +.|...+............. ......++
T Consensus 201 ~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d---~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ 277 (340)
T d1tbga_ 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD---ATCRLFDLRADQELMTYSHDNIICGITSVS 277 (340)
T ss_dssp EEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT---SCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred EeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCC---CeEEEEeecccccccccccccccCceEEEE
Confidence 66666778887776544433333334567899999875555555443 57888887766554443222 22347888
Q ss_pred EecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEEC-CEEEEEeCCCCeEE
Q psy13635 271 LDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLG-DYVYWTDWQRRSID 330 (357)
Q Consensus 271 id~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~~-~~ly~td~~~~~I~ 330 (357)
+++.+..| ++-...+.|...+.........+........++++.. +.+.+|-...+.|.
T Consensus 278 ~s~~~~~l-~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~ 337 (340)
T d1tbga_ 278 FSKSGRLL-LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337 (340)
T ss_dssp ECSSSCEE-EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred ECCCCCEE-EEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEE
Confidence 88655444 4444567898888765444334433344556777753 43444433445543
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.66 E-value=0.012 Score=49.34 Aligned_cols=230 Identities=13% Similarity=0.070 Sum_probs=128.7
Q ss_pred CCCCeEEEEEe-CCcEEEEEcCCCCcceEecc-CCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCC
Q psy13635 38 HVAAQMLLFAT-SKDIRIANLSRPLKPVTIIK-DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNG 115 (357)
Q Consensus 38 ~~~~~~l~~~~-~~~i~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 115 (357)
++...+|+-+. +..|+..|+..+........ ......++++.+. +.++.+. .++.+...+..+.............
T Consensus 21 s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~-g~~~~~~-~d~~v~~~~~~~~~~~~~~~~~~~~ 98 (299)
T d1nr0a2 21 SADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK-GDLFTVS-WDDHLKVVPAGGSGVDSSKAVANKL 98 (299)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT-SCEEEEE-TTTEEEEECSSSSSSCTTSCCEEEC
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecc-ceeeccc-ceeeEEEeccCCccccccccccccc
Confidence 44445555544 35688889876433322222 3445788999875 4555444 4567877777665421112222223
Q ss_pred cCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeC
Q psy13635 116 LITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDT 195 (357)
Q Consensus 116 ~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~ 195 (357)
...+.++++.+.+..+..+. .+.+...+.. ...+.. . -..+..+++.+.+..|+ +..
T Consensus 99 ~~~~~~~~~s~~g~~~~~~~--~~~i~~~~~~-~~~~~~--~-----------------~~~~~~~~~s~~~~~l~-~g~ 155 (299)
T d1nr0a2 99 SSQPLGLAVSADGDIAVAAC--YKHIAIYSHG-KLTEVP--I-----------------SYNSSCVALSNDKQFVA-VGG 155 (299)
T ss_dssp SSCEEEEEECTTSSCEEEEE--SSEEEEEETT-EEEEEE--C-----------------SSCEEEEEECTTSCEEE-EEE
T ss_pred cccccccccccccccccccc--cccccccccc-cccccc--c-----------------ccccccccccccccccc-ccc
Confidence 34678888887655555544 2455555432 111111 0 02345677776555444 444
Q ss_pred CCCeEEEEEcCCCceEEE-ecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeC---CCCCceEEEE
Q psy13635 196 GTDRIEVCRLEGTHRKVL-VNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKD---RLGWPNGITL 271 (357)
Q Consensus 196 ~~~~I~~~~~~g~~~~~~-~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~---~l~~P~giai 271 (357)
..+.|...++.+.....+ ....-..+..++++|....|+.+... +.|...+............ ......++++
T Consensus 156 ~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 232 (299)
T d1nr0a2 156 QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQS---RKVIPYSVANNFELAHTNSWTFHTAKVACVSW 232 (299)
T ss_dssp TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETT---SCEEEEEGGGTTEESCCCCCCCCSSCEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccc
Confidence 457888888876543322 22233567899999976777766654 5777777654433222111 1234578899
Q ss_pred ecCCCEEEEEeCCCCeEEEEeCCCC
Q psy13635 272 DVDNEKLYWCDAKTDKIEMIDFDGN 296 (357)
Q Consensus 272 d~~~~~lY~~d~~~~~I~~~~~dG~ 296 (357)
.+.+..|+.. ...+.|...++...
T Consensus 233 s~~~~~l~sg-s~dg~i~iwd~~~~ 256 (299)
T d1nr0a2 233 SPDNVRLATG-SLDNSVIVWNMNKP 256 (299)
T ss_dssp CTTSSEEEEE-ETTSCEEEEETTCT
T ss_pred cccccceEEE-cCCCEEEEEECCCC
Confidence 8655555444 45578888887643
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.63 E-value=0.0049 Score=55.13 Aligned_cols=188 Identities=13% Similarity=0.105 Sum_probs=120.8
Q ss_pred CCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCC---------
Q psy13635 128 TEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTD--------- 198 (357)
Q Consensus 128 ~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~--------- 198 (357)
++.||+.|..+.+|.|++++.-....++... ....|.|+.+....+..|+...+..
T Consensus 99 GrylFVNDkan~RVAvIdl~~fkt~kIi~iP---------------n~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~ 163 (459)
T d1fwxa2 99 GRFLFMNDKANTRVARVRCDVMKCDAILEIP---------------NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGT 163 (459)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEECS---------------SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSS
T ss_pred eeEEEEEcCCCceEEEEECcceeeeEEEecC---------------CCCCCceeecccCCCeEEEEccCccccccCCCCc
Confidence 8899999999999999999987765555322 1236788887655556666653332
Q ss_pred ----------eEEEEEcCCCceE--EEecCCCCCceEEEEeCCCCEEEEEeCCCCC------------CeEEEEe-----
Q psy13635 199 ----------RIEVCRLEGTHRK--VLVNTDLVEPRAITLSPAHGYLFWSDWNEKR------------PKIERSL----- 249 (357)
Q Consensus 199 ----------~I~~~~~~g~~~~--~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~------------~~I~~~~----- 249 (357)
.+..+|.+..... +.+. ..|.++++++..+.+|++...++. ..+...+
T Consensus 164 ~l~d~~~y~~~~t~ID~~tm~V~~QV~V~---g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie 240 (459)
T d1fwxa2 164 NMEDVANYVNVFTAVDADKWEVAWQVLVS---GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE 240 (459)
T ss_dssp STTCGG-EEEEEEEEETTTTEEEEEEEES---SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred cccchhhcceEEEEEecCCceEEEEeeeC---CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhH
Confidence 2344555532221 2222 368899999998999998754320 0111111
Q ss_pred ------------------cC---CCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCC--------CCC-eE
Q psy13635 250 ------------------LN---GGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFD--------GNN-RR 299 (357)
Q Consensus 250 ------------------~d---g~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~d--------G~~-~~ 299 (357)
.. +......+.. -..|+|+.+++++.++|++....+.+..++.. +.. +.
T Consensus 241 ~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~ 319 (459)
T d1fwxa2 241 KAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS 319 (459)
T ss_dssp HHHHHTCSEEETTEEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGG
T ss_pred HhhhcCCcEEeCCceeecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccc
Confidence 11 1111111111 25699999999999999999999999999974 111 11
Q ss_pred EEec--CCCCceEEEEEEC-CEEEEEeCCCCeEEEEeC
Q psy13635 300 ELIN--ENLPHVFGISLLG-DYVYWTDWQRRSIDRVNK 334 (357)
Q Consensus 300 ~i~~--~~~~~p~gia~~~-~~ly~td~~~~~I~~~~~ 334 (357)
.+.. +..-.|.--++++ |+.|.|-.-...|.+-+.
T Consensus 320 ~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~ 357 (459)
T d1fwxa2 320 AVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNI 357 (459)
T ss_dssp GEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred cEEeecccCcCccccccCCCceEEEEeeccceEEEEec
Confidence 1222 2244788888884 899999988888887774
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.56 E-value=0.021 Score=49.79 Aligned_cols=227 Identities=7% Similarity=-0.043 Sum_probs=126.2
Q ss_pred EeecCCCCeEEEEEeC-CcEEEEEcCCCCcceE---eccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeE
Q psy13635 34 ALSHHVAAQMLLFATS-KDIRIANLSRPLKPVT---IIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKH 109 (357)
Q Consensus 34 ~~~~~~~~~~l~~~~~-~~i~~~~~~~~~~~~~---~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~ 109 (357)
|++-++...+|+.+.. +.|+..+++++ +... +........+++|+|.++.|.-+ ..++.|+..++++.. ...
T Consensus 12 ~~~~s~dg~~la~~~~~~~i~iw~~~~~-~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~-s~D~~i~vWd~~~~~--~~~ 87 (371)
T d1k8kc_ 12 CHAWNKDRTQIAICPNNHEVHIYEKSGN-KWVQVHELKEHNGQVTGVDWAPDSNRIVTC-GTDRNAYVWTLKGRT--WKP 87 (371)
T ss_dssp EEEECTTSSEEEEECSSSEEEEEEEETT-EEEEEEEEECCSSCEEEEEEETTTTEEEEE-ETTSCEEEEEEETTE--EEE
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCCC-CEEEEEEecCCCCCEEEEEECCCCCEEEEE-ECCCeEEEEeecccc--ccc
Confidence 3344555566666654 56888888663 2222 22345578999999977766544 345678877777653 112
Q ss_pred EE-EeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCC
Q psy13635 110 NV-ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVAR 188 (357)
Q Consensus 110 ~~-~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~ 188 (357)
.. .......+..+++++.++.++.+. .++.|...+.+............. .--.....++++|.+.
T Consensus 88 ~~~~~~~~~~v~~i~~~p~~~~l~~~s-~d~~i~i~~~~~~~~~~~~~~~~~------------~~~~~v~~v~~~p~~~ 154 (371)
T d1k8kc_ 88 TLVILRINRAARCVRWAPNEKKFAVGS-GSRVISICYFEQENDWWVCKHIKK------------PIRSTVLSLDWHPNSV 154 (371)
T ss_dssp EEECCCCSSCEEEEEECTTSSEEEEEE-TTSSEEEEEEETTTTEEEEEEECT------------TCCSCEEEEEECTTSS
T ss_pred ccccccccccccccccccccccceeec-ccCcceeeeeeccccccccccccc------------cccccccccccccccc
Confidence 22 223345678899998666665554 456676666554433222111100 0012346678876554
Q ss_pred eEEEEeCCCCeEEEEEcCCCce----------------EEEe--cCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEec
Q psy13635 189 NLYWTDTGTDRIEVCRLEGTHR----------------KVLV--NTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLL 250 (357)
Q Consensus 189 ~lY~td~~~~~I~~~~~~g~~~----------------~~~~--~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~ 250 (357)
++.+....+.|...+...... ..+. ........+++++|.+.+|+.+... +.|...+.
T Consensus 155 -~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d---~~i~iwd~ 230 (371)
T d1k8kc_ 155 -LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD---STVCLADA 230 (371)
T ss_dssp -EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT---TEEEEEEG
T ss_pred -ceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccC---CcceEEee
Confidence 445555556777766543210 0111 1123346789999976677666543 57888887
Q ss_pred CCCceEEEeeCCCCCceEEEEecCCCEEEEEe
Q psy13635 251 NGGERVLLVKDRLGWPNGITLDVDNEKLYWCD 282 (357)
Q Consensus 251 dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d 282 (357)
........+...-....++++.+ ++.+..+-
T Consensus 231 ~~~~~~~~~~~~~~~v~s~~fs~-d~~~la~g 261 (371)
T d1k8kc_ 231 DKKMAVATLASETLPLLAVTFIT-ESSLVAAG 261 (371)
T ss_dssp GGTTEEEEEECSSCCEEEEEEEE-TTEEEEEE
T ss_pred ecccceeeeecccccceeeeecC-CCCEEEEE
Confidence 65554444433323346888874 45555443
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.50 E-value=0.019 Score=47.56 Aligned_cols=268 Identities=11% Similarity=0.093 Sum_probs=136.9
Q ss_pred CCCCeEEEEEe-CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCc
Q psy13635 38 HVAAQMLLFAT-SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGL 116 (357)
Q Consensus 38 ~~~~~~l~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~ 116 (357)
++..++|+-+. +..|+..|+.................++++++....+..... .+.+...+..... .........
T Consensus 26 sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~ 101 (317)
T d1vyhc1 26 HPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA-DMTIKLWDFQGFE---CIRTMHGHD 101 (317)
T ss_dssp CSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEET-TSCCCEEETTSSC---EEECCCCCS
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccc-ccccccccccccc---ccccccccc
Confidence 44556666555 457999998775444444445567889999986666655544 3344444444332 122222233
Q ss_pred CCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCC
Q psy13635 117 ITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTG 196 (357)
Q Consensus 117 ~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~ 196 (357)
.....+.+.+.++.+ ++-..++.+...++............ ......+++++.+. ++.+...
T Consensus 102 ~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~-~l~~~~~ 163 (317)
T d1vyhc1 102 HNVSSVSIMPNGDHI-VSASRDKTIKMWEVQTGYCVKTFTGH----------------REWVRMVRPNQDGT-LIASCSN 163 (317)
T ss_dssp SCEEEEEECSSSSEE-EEEETTSEEEEEETTTCCEEEEEECC----------------SSCEEEEEECTTSS-EEEEEET
T ss_pred ccceeeeccCCCceE-EeeccCcceeEeecccceeeeEEccC----------------CCcceeeecccCCC-EEEEEeC
Confidence 445667777655544 44455678888887654433222211 12345566665443 4444444
Q ss_pred CCeEEEEEcCCCceEEEecCCCCCceEEEEeCCC-------------------CEEEEEeCCCCCCeEEEEecCCCceEE
Q psy13635 197 TDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAH-------------------GYLFWSDWNEKRPKIERSLLNGGERVL 257 (357)
Q Consensus 197 ~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~-------------------g~Ly~~d~~~~~~~I~~~~~dg~~~~~ 257 (357)
.+.|...+...................+++.+.. +.+..+-.. .+.|...+........
T Consensus 164 d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~i~~~~~~~~~~~~ 241 (317)
T d1vyhc1 164 DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR--DKTIKMWDVSTGMCLM 241 (317)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET--TSEEEEEETTTTEEEE
T ss_pred CCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccC--CCEEEEEECCCCcEEE
Confidence 5667777665443333222222223333333321 222222222 1356555655443333
Q ss_pred EeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEEC-CEEEEEeCCCCeEE
Q psy13635 258 LVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLLG-DYVYWTDWQRRSID 330 (357)
Q Consensus 258 ~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~~-~~ly~td~~~~~I~ 330 (357)
.+...-....++++.+.+..|+.+ ...+.|...+.........+.........+++.. +.+.++-...+.|.
T Consensus 242 ~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~ 314 (317)
T d1vyhc1 242 TLVGHDNWVRGVLFHSGGKFILSC-ADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVK 314 (317)
T ss_dssp EEECCSSCEEEEEECSSSSCEEEE-ETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEE
T ss_pred EEeCCCCCEEEEEECCCCCEEEEE-ECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEE
Confidence 333333455788888655545444 4567888888754333233333344556777752 33334433445553
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.49 E-value=0.019 Score=47.53 Aligned_cols=261 Identities=7% Similarity=-0.024 Sum_probs=134.5
Q ss_pred CCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCC
Q psy13635 69 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG 148 (357)
Q Consensus 69 ~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g 148 (357)
.-....+++|++.++. ..+-..++.|+..++.... ....+.........+++++.+..+. +....+.+...+...
T Consensus 16 H~~~I~~l~~sp~~~~-l~s~s~Dg~i~iWd~~~~~---~~~~~~~h~~~V~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 90 (317)
T d1vyhc1 16 HRSPVTRVIFHPVFSV-MVSASEDATIKVWDYETGD---FERTLKGHTDSVQDISFDHSGKLLA-SCSADMTIKLWDFQG 90 (317)
T ss_dssp CSSCEEEEEECSSSSE-EEEEESSSCEEEEETTTCC---CCEEECCCSSCEEEEEECTTSSEEE-EEETTSCCCEEETTS
T ss_pred CCCCeEEEEEcCCCCE-EEEEeCCCeEEEEECCCCC---EEEEEeCCCCcEEEEeeeccccccc-ccccccccccccccc
Confidence 3446788899886554 4555556788888877553 1333333345577888887544444 443444444444433
Q ss_pred CceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEeC
Q psy13635 149 KKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLSP 228 (357)
Q Consensus 149 ~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~ 228 (357)
........ ........+.+.+.+..+. +-...+.+...+...................+++++
T Consensus 91 ~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (317)
T d1vyhc1 91 FECIRTMH----------------GHDHNVSSVSIMPNGDHIV-SASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ 153 (317)
T ss_dssp SCEEECCC----------------CCSSCEEEEEECSSSSEEE-EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT
T ss_pred cccccccc----------------cccccceeeeccCCCceEE-eeccCcceeEeecccceeeeEEccCCCcceeeeccc
Confidence 32221110 1112334555665555554 444456777777664443333333445677888888
Q ss_pred CCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEec-------------------CCCEEEEEeCCCCeEE
Q psy13635 229 AHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDV-------------------DNEKLYWCDAKTDKIE 289 (357)
Q Consensus 229 ~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~-------------------~~~~lY~~d~~~~~I~ 289 (357)
....|..+... +.|...+.........+...-.....+++.+ ..+.+..+-...+.|.
T Consensus 154 ~~~~l~~~~~d---~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 230 (317)
T d1vyhc1 154 DGTLIASCSND---QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 230 (317)
T ss_dssp TSSEEEEEETT---SCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEE
T ss_pred CCCEEEEEeCC---CeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEE
Confidence 65555544443 4666666554433322222111122222211 2233334444456676
Q ss_pred EEeCCCCCeEEEecCCCCceEEEEEE-CCEEEEEeCCCCeEEEEeCccCceeEEEecccCCceeee
Q psy13635 290 MIDFDGNNRRELINENLPHVFGISLL-GDYVYWTDWQRRSIDRVNKITGNDREVIIERSCTGVTRR 354 (357)
Q Consensus 290 ~~~~dG~~~~~i~~~~~~~p~gia~~-~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~i~ 354 (357)
..+.........+...-....++++. ++.+.++-...+.|...+..+++....+...-.....+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~ 296 (317)
T d1vyhc1 231 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLD 296 (317)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEE
T ss_pred EEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence 66664433222222233345667765 344444444567888888777877776654443444443
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.24 E-value=0.037 Score=49.37 Aligned_cols=202 Identities=11% Similarity=0.076 Sum_probs=126.1
Q ss_pred CCCcEEEEEEE---ccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCC------
Q psy13635 69 DLEEGAAIDYY---YKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETN------ 139 (357)
Q Consensus 69 ~~~~~~~i~~d---~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~------ 139 (357)
+..+| .+.+- +++..||+.|..+.+|.|++++.-... +.+.......+.|+......+..|+......
T Consensus 84 D~HHP-~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~--kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pn 160 (459)
T d1fwxa2 84 DLHHV-HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCD--AILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVN 160 (459)
T ss_dssp CBCCE-EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEE--EEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSC
T ss_pred CcCCC-cccccCCccceeEEEEEcCCCceEEEEECcceeee--EEEecCCCCCCceeecccCCCeEEEEccCccccccCC
Confidence 55566 44443 356789999999999999999987411 2233355678999998766677777663322
Q ss_pred -------------EEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCC--------
Q psy13635 140 -------------KLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTD-------- 198 (357)
Q Consensus 140 -------------~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~-------- 198 (357)
.+..++.+......-+. .. ..|.++++++.++.+|++..+..
T Consensus 161 dg~~l~d~~~y~~~~t~ID~~tm~V~~QV~---------------V~--g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ 223 (459)
T d1fwxa2 161 DGTNMEDVANYVNVFTAVDADKWEVAWQVL---------------VS--GNLDNCDADYEGKWAFSTSYNSEKGMTLPEM 223 (459)
T ss_dssp SSSSTTCGG-EEEEEEEEETTTTEEEEEEE---------------ES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHH
T ss_pred CCccccchhhcceEEEEEecCCceEEEEee---------------eC--CChhccccCCCCCEEEEEeccccCCcchhhc
Confidence 23344444332211111 01 26889999999999999875431
Q ss_pred ------eEEEEE-----------------------cC---CCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEE
Q psy13635 199 ------RIEVCR-----------------------LE---GTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIE 246 (357)
Q Consensus 199 ------~I~~~~-----------------------~~---g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~ 246 (357)
.+.+.+ .. +......+.. -+.|.|+.++|++.++|++..-. ..+.
T Consensus 224 ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs--~tVS 300 (459)
T d1fwxa2 224 TAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLS--PTVT 300 (459)
T ss_dssp TCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTS--SBEE
T ss_pred ccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcC--CcEE
Confidence 222222 11 1111111111 25799999999988999998775 4888
Q ss_pred EEecC--------CCc-eEEEee-CC-CCCceEEEEecCCCEEEEEeCCCCeEEEEeCC
Q psy13635 247 RSLLN--------GGE-RVLLVK-DR-LGWPNGITLDVDNEKLYWCDAKTDKIEMIDFD 294 (357)
Q Consensus 247 ~~~~d--------g~~-~~~~~~-~~-l~~P~giaid~~~~~lY~~d~~~~~I~~~~~d 294 (357)
.++.. ... +..+.. .. --.|.--++| ..|+.|.+-.-...|.+-+++
T Consensus 301 ViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd-~~g~aytslfids~v~kw~~~ 358 (459)
T d1fwxa2 301 VLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFD-GRGNAYTSLFLDSQVVKWNIE 358 (459)
T ss_dssp EEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEEC-TTSEEEEEETTTTEEEEEEHH
T ss_pred EEEehhhhhhhcccCCccccEEeecccCcCccccccC-CCceEEEEeeccceEEEEecc
Confidence 88874 111 111111 11 2358888999 578999998888888887763
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.11 E-value=0.058 Score=45.24 Aligned_cols=285 Identities=12% Similarity=0.042 Sum_probs=140.4
Q ss_pred EEEEEe-CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCcee
Q psy13635 43 MLLFAT-SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDG 121 (357)
Q Consensus 43 ~l~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~g 121 (357)
+|+-+. +..|+..|+............-....++++.+ ++. +++-..++.|...+..... ..............
T Consensus 25 ~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~-~~~-l~s~s~D~~i~iw~~~~~~---~~~~~~~~~~~~~~ 99 (355)
T d1nexb2 25 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH-GGI-LVSGSTDRTVRVWDIKKGC---CTHVFEGHNSTVRC 99 (355)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEET-TTE-EEEEETTCCEEEEETTTTE---EEEEECCCSSCEEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcC-CCE-EEEEecccccccccccccc---cccccccccccccc
Confidence 444444 45688899876443333444556788999986 454 4555566788887777653 12222222222222
Q ss_pred E-EEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeee-c---cCcccccCCceEEEeCCCCeEEEEeCC
Q psy13635 122 L-AIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASY-K---LPTIEVEHPDGVAVDWVARNLYWTDTG 196 (357)
Q Consensus 122 l-avd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~-~---~~~~~~~~p~glavD~~~~~lY~td~~ 196 (357)
. ......+....+-...+.|...++...............+...... . ...........+......+.+..+...
T Consensus 100 ~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 179 (355)
T d1nexb2 100 LDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY 179 (355)
T ss_dssp EEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEET
T ss_pred cccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecc
Confidence 1 2222344445555566778777765443211111000000000000 0 000000011111111122334444444
Q ss_pred CCeEEEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCC
Q psy13635 197 TDRIEVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNE 276 (357)
Q Consensus 197 ~~~I~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~ 276 (357)
...|...+...................+.+++....++..... +.|...+.........+...-.....++++ ++
T Consensus 180 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~ 254 (355)
T d1nexb2 180 DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD---TTIRIWDLENGELMYTLQGHTALVGLLRLS--DK 254 (355)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETT---SCEEEEETTTCCEEEEECCCSSCCCEEEEC--SS
T ss_pred cceeeeeecccccceeeeeccccccccccccccceeeeccccc---ceEEeeeccccccccccccccccccccccc--cc
Confidence 5677777766544443444445567788889876666666554 477777776555544443333345677764 34
Q ss_pred EEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEE--ECCEEEEEeCCCCeEEEEeCccCceeE
Q psy13635 277 KLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISL--LGDYVYWTDWQRRSIDRVNKITGNDRE 341 (357)
Q Consensus 277 ~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~--~~~~ly~td~~~~~I~~~~~~~g~~~~ 341 (357)
. .++-...+.|...+........... ......++. .++.+..+.. .+.|...+..+|+...
T Consensus 255 ~-l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~~~~ 317 (355)
T d1nexb2 255 F-LVSAAADGSIRGWDANDYSRKFSYH--HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVH 317 (355)
T ss_dssp E-EEEECTTSEEEEEETTTCCEEEEEE--CTTCCCCCEEEECSSEEEEEE-TTEEEEEETTTCCBCC
T ss_pred e-eeeeecccccccccccccceecccc--cCCceEEEEEcCCCCEEEEEe-CCEEEEEECCCCCEEE
Confidence 4 4555567788888876544332222 222223322 2455555543 4677777776676553
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.10 E-value=0.072 Score=46.14 Aligned_cols=228 Identities=11% Similarity=0.107 Sum_probs=125.8
Q ss_pred EEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceE
Q psy13635 73 GAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRK 152 (357)
Q Consensus 73 ~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~ 152 (357)
...++|++++..|. +-..++.|.-.+.++... .....+...-.....+++++.++.| .+-..++.|...+++....+
T Consensus 10 It~~~~s~dg~~la-~~~~~~~i~iw~~~~~~~-~~~~~l~gH~~~V~~l~fsp~~~~l-~s~s~D~~i~vWd~~~~~~~ 86 (371)
T d1k8kc_ 10 ISCHAWNKDRTQIA-ICPNNHEVHIYEKSGNKW-VQVHELKEHNGQVTGVDWAPDSNRI-VTCGTDRNAYVWTLKGRTWK 86 (371)
T ss_dssp CCEEEECTTSSEEE-EECSSSEEEEEEEETTEE-EEEEEEECCSSCEEEEEEETTTTEE-EEEETTSCEEEEEEETTEEE
T ss_pred eEEEEECCCCCEEE-EEeCCCEEEEEECCCCCE-EEEEEecCCCCCEEEEEECCCCCEE-EEEECCCeEEEEeecccccc
Confidence 46788888655554 445567777777776531 1122333334567899999865544 44455778888888765433
Q ss_pred E-EEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceE-E---EecCCCCCceEEEEe
Q psy13635 153 V-LYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRK-V---LVNTDLVEPRAITLS 227 (357)
Q Consensus 153 ~-~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~-~---~~~~~~~~P~giavd 227 (357)
. +...+ .-..+..+++++.+..++.+. ..+.|...+.+..... . .....-.....++++
T Consensus 87 ~~~~~~~---------------~~~~v~~i~~~p~~~~l~~~s-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~ 150 (371)
T d1k8kc_ 87 PTLVILR---------------INRAARCVRWAPNEKKFAVGS-GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH 150 (371)
T ss_dssp EEEECCC---------------CSSCEEEEEECTTSSEEEEEE-TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEEC
T ss_pred ccccccc---------------ccccccccccccccccceeec-ccCcceeeeeeccccccccccccccccccccccccc
Confidence 2 22111 112467788887766666554 4455666555433221 1 111122356789999
Q ss_pred CCCCEEEEEeCCCCCCeEEEEecCCCce----------------EEEe--eCCCCCceEEEEecCCCEEEEEeCCCCeEE
Q psy13635 228 PAHGYLFWSDWNEKRPKIERSLLNGGER----------------VLLV--KDRLGWPNGITLDVDNEKLYWCDAKTDKIE 289 (357)
Q Consensus 228 ~~~g~Ly~~d~~~~~~~I~~~~~dg~~~----------------~~~~--~~~l~~P~giaid~~~~~lY~~d~~~~~I~ 289 (357)
|.+..|..+... +.|...+...... ..+. ........++++++.+..|+... ..+.|.
T Consensus 151 p~~~~l~s~s~D---~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~-~d~~i~ 226 (371)
T d1k8kc_ 151 PNSVLLAAGSCD---FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS-HDSTVC 226 (371)
T ss_dssp TTSSEEEEEETT---SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE-TTTEEE
T ss_pred ccccceeccccC---cEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccc-cCCcce
Confidence 875555444433 3555444432110 1111 12234467899987766666554 467888
Q ss_pred EEeCCCCCeEEEecCCCCceEEEEEE-CCEEEEEe
Q psy13635 290 MIDFDGNNRRELINENLPHVFGISLL-GDYVYWTD 323 (357)
Q Consensus 290 ~~~~dG~~~~~i~~~~~~~p~gia~~-~~~ly~td 323 (357)
..+.........+........++++. ++.+..+-
T Consensus 227 iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g 261 (371)
T d1k8kc_ 227 LADADKKMAVATLASETLPLLAVTFITESSLVAAG 261 (371)
T ss_dssp EEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE
T ss_pred EEeeecccceeeeecccccceeeeecCCCCEEEEE
Confidence 88875544333333233334667775 46655553
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.06 E-value=0.071 Score=45.34 Aligned_cols=278 Identities=9% Similarity=-0.026 Sum_probs=140.5
Q ss_pred CCCCeEEEEEeCCcEEE--EEcCCCCcc-eEe-cc-CCCcEEEEEEEcc-CCEEEEEeCCCCeEEEEEcCCCCcceeE--
Q psy13635 38 HVAAQMLLFATSKDIRI--ANLSRPLKP-VTI-IK-DLEEGAAIDYYYK-KSMVCWTDHGTEMISCCTFDGNNVGSKH-- 109 (357)
Q Consensus 38 ~~~~~~l~~~~~~~i~~--~~~~~~~~~-~~~-~~-~~~~~~~i~~d~~-~~~ly~~d~~~~~I~~~~~~g~~~~~~~-- 109 (357)
++....+.++..+.+.. ++....... ... .. .-.....++|.|. ++.+..+...++.|...+..........
T Consensus 26 ~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~ 105 (325)
T d1pgua1 26 DPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEV 105 (325)
T ss_dssp ETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEE
T ss_pred CCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeec
Confidence 34445677777666443 333221111 111 12 2345789999874 4456666666677766555332210001
Q ss_pred ---EEEeCCcCCceeEEEEcCCCeEEEEeC-CCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeC
Q psy13635 110 ---NVITNGLITPDGLAIDWLTEKLYWTDS-ETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDW 185 (357)
Q Consensus 110 ---~~~~~~~~~p~glavd~~~~~ly~td~-~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~ 185 (357)
............+++.+.+..|..+.. ..+.+...+.+.......+. ..-....++++.+
T Consensus 106 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~h~~~v~~~~~~~ 169 (325)
T d1pgua1 106 NVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVS----------------GHSQRINACHLKQ 169 (325)
T ss_dssp EEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECC----------------SCSSCEEEEEECS
T ss_pred ccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeee----------------ecccccccccccc
Confidence 111222233567888876666665543 34456666665432211110 0112346688887
Q ss_pred CCCeEEEEeCCCCeEEEEEcCCCceEEEecC---CCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCC
Q psy13635 186 VARNLYWTDTGTDRIEVCRLEGTHRKVLVNT---DLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDR 262 (357)
Q Consensus 186 ~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~---~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~ 262 (357)
.+..+.++....+.|...+............ .......++++|..+.++.+-... +.|...+.........+...
T Consensus 170 ~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d--~~i~iwd~~~~~~~~~l~~~ 247 (325)
T d1pgua1 170 SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD--RKISCFDGKSGEFLKYIEDD 247 (325)
T ss_dssp SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT--CCEEEEETTTCCEEEECCBT
T ss_pred cccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccc--cceeeeeecccccccccccc
Confidence 7777777666667777777654332222211 223467899999777777765553 47877776644443333221
Q ss_pred CCCceEEE--EecCCCEEEEEeCCCCeEEEEeCCCCC-eEEEecC-CCC--ceEEEEEECCEEEEEeCCCCeEEEEe
Q psy13635 263 LGWPNGIT--LDVDNEKLYWCDAKTDKIEMIDFDGNN-RRELINE-NLP--HVFGISLLGDYVYWTDWQRRSIDRVN 333 (357)
Q Consensus 263 l~~P~gia--id~~~~~lY~~d~~~~~I~~~~~dG~~-~~~i~~~-~~~--~p~gia~~~~~ly~td~~~~~I~~~~ 333 (357)
-....++. +...+++.+++-...+.|...++.... .+.+... ... ...++...++..+++-...+.|...+
T Consensus 248 ~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwd 324 (325)
T d1pgua1 248 QEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324 (325)
T ss_dssp TBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred ccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEE
Confidence 11112222 221344455555566788888876433 3333221 111 22344444433344544556766544
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.05 E-value=0.078 Score=45.63 Aligned_cols=271 Identities=8% Similarity=-0.011 Sum_probs=146.0
Q ss_pred EeecCCCCeEEEEEeCCcEEEEEcCCCCcceEec------------------cCCCcEEEEEEEccCCEEEEEeCCCCeE
Q psy13635 34 ALSHHVAAQMLLFATSKDIRIANLSRPLKPVTII------------------KDLEEGAAIDYYYKKSMVCWTDHGTEMI 95 (357)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~i~~d~~~~~ly~~d~~~~~I 95 (357)
|++-++...+|..+....|+..|+..+....... .......++++.+.+..|. +-..++.|
T Consensus 67 ~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~-s~~~dg~v 145 (388)
T d1erja_ 67 CVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA-TGAEDRLI 145 (388)
T ss_dssp EEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE-EEETTSCE
T ss_pred EEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce-eccccccc
Confidence 3333445566766666778888886532221111 1222367889988655554 44456778
Q ss_pred EEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccc
Q psy13635 96 SCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEV 175 (357)
Q Consensus 96 ~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~ 175 (357)
...+..... ..............+++.+.+..++.+. ..+.|...+.............
T Consensus 146 ~i~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~----------------- 204 (388)
T d1erja_ 146 RIWDIENRK---IVMILQGHEQDIYSLDYFPSGDKLVSGS-GDRTVRIWDLRTGQCSLTLSIE----------------- 204 (388)
T ss_dssp EEEETTTTE---EEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTTEEEEEEECS-----------------
T ss_pred ccccccccc---cccccccccccccccccccccccccccc-cceeeeeeeccccccccccccc-----------------
Confidence 777776553 2223332344567788886555555444 5678888887765543332211
Q ss_pred cCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCc-eEEEecC------CCCCceEEEEeCCCCEEEEEeCCCCCCeEEEE
Q psy13635 176 EHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTH-RKVLVNT------DLVEPRAITLSPAHGYLFWSDWNEKRPKIERS 248 (357)
Q Consensus 176 ~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~-~~~~~~~------~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~ 248 (357)
..+..+++.+.++.++++....+.|...+..... ...+... .......++++|....|+.+... +.|...
T Consensus 205 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---~~i~iw 281 (388)
T d1erja_ 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD---RSVKLW 281 (388)
T ss_dssp SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT---SEEEEE
T ss_pred cccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECC---CcEEEE
Confidence 1233445555566666665556677777766432 2222211 12345789999875566555443 466666
Q ss_pred ecCCCceEE------------EeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecCCCCceEEEEEE-
Q psy13635 249 LLNGGERVL------------LVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINENLPHVFGISLL- 315 (357)
Q Consensus 249 ~~dg~~~~~------------~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~~~~~p~gia~~- 315 (357)
++....... .....-.....+++.+.+..|+.+. ..+.|...+.........+...-.....+++.
T Consensus 282 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~-~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~ 360 (388)
T d1erja_ 282 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS-KDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 360 (388)
T ss_dssp EC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE-TTSEEEEEETTTCCEEEEEECCSSCEEEEEECS
T ss_pred eccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEe-CCCEEEEEECCCCcEEEEEeCCCCCEEEEEEec
Confidence 654322111 1111223457888886655555444 56788888875444333333334445566553
Q ss_pred ------CCEEEEEeCCCCeEE
Q psy13635 316 ------GDYVYWTDWQRRSID 330 (357)
Q Consensus 316 ------~~~ly~td~~~~~I~ 330 (357)
++.+++|-...++|.
T Consensus 361 ~~~~spd~~~l~s~s~Dg~I~ 381 (388)
T d1erja_ 361 GSSLGPEYNVFATGSGDCKAR 381 (388)
T ss_dssp SCTTCTTCEEEEEEETTSEEE
T ss_pred CcccCCCCCEEEEEeCCCEEE
Confidence 355666655556643
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.83 E-value=0.1 Score=43.53 Aligned_cols=263 Identities=8% Similarity=-0.015 Sum_probs=132.9
Q ss_pred cCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcC
Q psy13635 68 KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD 147 (357)
Q Consensus 68 ~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~ 147 (357)
.......+++|++.+..| .+-..++.|...++.... ....+...-.....+++.+.+..++.+ ...+.|...+..
T Consensus 53 GH~~~I~~l~~s~~~~~l-~sgs~Dg~v~iWd~~~~~---~~~~~~~~~~~v~~v~~~~~~~~l~~~-~~d~~i~~~~~~ 127 (340)
T d1tbga_ 53 GHLAKIYAMHWGTDSRLL-VSASQDGKLIIWDSYTTN---KVHAIPLRSSWVMTCAYAPSGNYVACG-GLDNICSIYNLK 127 (340)
T ss_dssp CCSSCEEEEEECTTSSEE-EEEETTTEEEEEETTTTE---EEEEEECSCSCEEEEEECTTSSEEEEE-ETTCCEEEEESS
T ss_pred CCCCCEEEEEECCCCCEE-EEEECCCceeeeecccce---eEEEEecccccEEeeEeeccceeeeee-cccceeeccccc
Confidence 345568899999865544 555567888888887653 233333334557889999755555444 445666666644
Q ss_pred CCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCCCCCceEEEEe
Q psy13635 148 GKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTDLVEPRAITLS 227 (357)
Q Consensus 148 g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~~~~P~giavd 227 (357)
...........+... ..............+..... ...............................
T Consensus 128 ~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (340)
T d1tbga_ 128 TREGNVRVSRELAGH-------------TGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLA 193 (340)
T ss_dssp SSCSCCCEEEEECCC-------------SSCEEEEEEEETTEEEEEET-TTEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred ccccccccceecccc-------------cccccccccccccccccccc-cccccccccccccccccccccceeEeeeccc
Confidence 322111000000000 00111111112222222222 2233333333322222222222233344444
Q ss_pred CCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecC--C
Q psy13635 228 PAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINE--N 305 (357)
Q Consensus 228 ~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~--~ 305 (357)
+. +.++.+-... +.|...++........+...-....++++++.+..| ++-...+.|...+............ .
T Consensus 194 ~~-~~~~~~~~~d--~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l-~s~s~d~~i~~~~~~~~~~~~~~~~~~~ 269 (340)
T d1tbga_ 194 PD-TRLFVSGACD--ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF-ATGSDDATCRLFDLRADQELMTYSHDNI 269 (340)
T ss_dssp TT-SSEEEEEETT--TEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE-EEEETTSCEEEEETTTTEEEEEECCTTC
T ss_pred cc-cceeEEeecC--ceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEE-EEEeCCCeEEEEeecccccccccccccc
Confidence 43 4444443332 467666765544444443334456889998655544 4444567888888876554333321 1
Q ss_pred CCceEEEEEE-CCEEEEEeCCCCeEEEEeCccCceeEEEecccCCceee
Q psy13635 306 LPHVFGISLL-GDYVYWTDWQRRSIDRVNKITGNDREVIIERSCTGVTR 353 (357)
Q Consensus 306 ~~~p~gia~~-~~~ly~td~~~~~I~~~~~~~g~~~~~i~~~l~~p~~i 353 (357)
......+++. .+.+.++-...+.|...+..+++....+..+-.....+
T Consensus 270 ~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l 318 (340)
T d1tbga_ 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL 318 (340)
T ss_dssp CSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred cCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEE
Confidence 2234566765 35555555566888888887787777665443333333
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.94 E-value=0.41 Score=40.74 Aligned_cols=239 Identities=8% Similarity=0.015 Sum_probs=126.3
Q ss_pred EeecCCCCeEEEEEeC-CcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEE
Q psy13635 34 ALSHHVAAQMLLFATS-KDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI 112 (357)
Q Consensus 34 ~~~~~~~~~~l~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~ 112 (357)
+++-++...+|+.+.. ..|+..+...................+++.+....++.+. ..+.+...+..... ....
T Consensus 126 ~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~----~~~~ 200 (388)
T d1erja_ 126 SVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS-GDRTVRIWDLRTGQ----CSLT 200 (388)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTTE----EEEE
T ss_pred EEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccc-cceeeeeeeccccc----cccc
Confidence 3344445556655553 4588888866443443444456678888888766766654 45677777777653 2223
Q ss_pred eCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEE
Q psy13635 113 TNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYW 192 (357)
Q Consensus 113 ~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~ 192 (357)
......+..+++.+..++++.+....+.|...+................. .........+++.+.+..|+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~---------~~h~~~v~~l~~s~~~~~l~- 270 (388)
T d1erja_ 201 LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESG---------TGHKDSVYSVVFTRDGQSVV- 270 (388)
T ss_dssp EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC---------------CCCSSCEEEEEECTTSSEEE-
T ss_pred cccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccc---------cCCCCCEEEEEECCCCCEEE-
Confidence 33334556677776677777776677888888876443322211110000 00112346778886555444
Q ss_pred EeCCCCeEEEEEcCCCceEE------------EecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEee
Q psy13635 193 TDTGTDRIEVCRLEGTHRKV------------LVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVK 260 (357)
Q Consensus 193 td~~~~~I~~~~~~g~~~~~------------~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~ 260 (357)
+....+.|...++....... ...........++++|.+..|+.+... +.|...++........+.
T Consensus 271 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d---g~i~vwd~~~~~~~~~l~ 347 (388)
T d1erja_ 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD---RGVLFWDKKSGNPLLMLQ 347 (388)
T ss_dssp EEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT---SEEEEEETTTCCEEEEEE
T ss_pred EEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCC---CEEEEEECCCCcEEEEEe
Confidence 44445677777655322111 111122346788888865556555543 577777776544433333
Q ss_pred CCCCCceEEEEec-----CCCEEEEEeCCCCeEEE
Q psy13635 261 DRLGWPNGITLDV-----DNEKLYWCDAKTDKIEM 290 (357)
Q Consensus 261 ~~l~~P~giaid~-----~~~~lY~~d~~~~~I~~ 290 (357)
..-....++++.. .++.++++-...+.|..
T Consensus 348 ~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~i 382 (388)
T d1erja_ 348 GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382 (388)
T ss_dssp CCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEE
T ss_pred CCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEE
Confidence 3333445554421 13455554444444443
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.46 E-value=0.78 Score=40.58 Aligned_cols=113 Identities=11% Similarity=0.107 Sum_probs=65.7
Q ss_pred CEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCC------CCeEEEEeCCCCCeEEEecC
Q psy13635 231 GYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAK------TDKIEMIDFDGNNRRELINE 304 (357)
Q Consensus 231 g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~------~~~I~~~~~dG~~~~~i~~~ 304 (357)
+.++|........+|+.++.+|.....+.... ....++ +..+++.+|++-.. ...|++++++|......+..
T Consensus 332 ~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g~-~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~ 409 (470)
T d2bgra1 332 SFYKIISNEEGYRHICYFQIDKKDCTFITKGT-WEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSC 409 (470)
T ss_dssp EEEEEEECTTSCEEEEEEETTCSCCEESCCSS-SCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESST
T ss_pred CcEEEEeccCcCceeEEEeccCCceeeeccCC-eeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecc
Confidence 45555544433468999999988877665333 334444 33357889887532 22599999998766555542
Q ss_pred C-CCc---eEEEEEE--CCEEEEEeCCC--CeEEEEeCccCceeEEEec
Q psy13635 305 N-LPH---VFGISLL--GDYVYWTDWQR--RSIDRVNKITGNDREVIIE 345 (357)
Q Consensus 305 ~-~~~---p~gia~~--~~~ly~td~~~--~~I~~~~~~~g~~~~~i~~ 345 (357)
. ..+ -..+++. +.++..+-++. -.+..++..+|+.+.++.+
T Consensus 410 ~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le~ 458 (470)
T d2bgra1 410 ELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLED 458 (470)
T ss_dssp TTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEEC
T ss_pred cccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECCCCCEEEEEec
Confidence 2 222 2345554 34433333332 2355566667888777754
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.24 E-value=0.61 Score=38.05 Aligned_cols=267 Identities=10% Similarity=0.040 Sum_probs=129.0
Q ss_pred CCCCeEEEEEe-CCcEEEEEcCCCCcceEe---ccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEe
Q psy13635 38 HVAAQMLLFAT-SKDIRIANLSRPLKPVTI---IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT 113 (357)
Q Consensus 38 ~~~~~~l~~~~-~~~i~~~~~~~~~~~~~~---~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~ 113 (357)
++...+|+.++ +..|+..|++........ .........++|.+.++.+..+-..++.|...+..... ......
T Consensus 20 sp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~---~~~~~~ 96 (342)
T d1yfqa_ 20 IPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP---SFQALT 96 (342)
T ss_dssp EGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS---SEEECB
T ss_pred eCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccc---cccccc
Confidence 33456676665 456888887653322222 23445678999998888887777777888888887664 122222
Q ss_pred CCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCc--eEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEE
Q psy13635 114 NGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKK--RKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLY 191 (357)
Q Consensus 114 ~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~--~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY 191 (357)
............+.+....++....+.+...++.... ......... ...........+......+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~ 164 (342)
T d1yfqa_ 97 NNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS------------NNTKVKNKIFTMDTNSSRLI 164 (342)
T ss_dssp SCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCS------------SSSSSCCCEEEEEECSSEEE
T ss_pred ccccccccccccccccccccccccccccceeeccccccceeeeccccc------------ccccceeeeeeeeccCCcee
Confidence 2222233333333455566666666777776653211 111111110 00111223344453444444
Q ss_pred EEeCCCCeEEEEEcCCCce--E-EEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCc-------eEEEee-
Q psy13635 192 WTDTGTDRIEVCRLEGTHR--K-VLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGE-------RVLLVK- 260 (357)
Q Consensus 192 ~td~~~~~I~~~~~~g~~~--~-~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~-------~~~~~~- 260 (357)
+....+.|...++..... . .............+..+..+..+.+-... +.+.....+... ......
T Consensus 165 -~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d--g~~~v~~~~~~~~~~~~~~~~~~~~~ 241 (342)
T d1yfqa_ 165 -VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSID--GRVAVEFFDDQGDDYNSSKRFAFRCH 241 (342)
T ss_dssp -EEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETT--SEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred -eecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCC--CeEEEEEecCCcceeeccccceeeee
Confidence 334456777777654321 1 11111222333444444444444443332 344444433221 111110
Q ss_pred -------CCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCeEEEecC-CCCceEEEEEECCEEEEEe
Q psy13635 261 -------DRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNRRELINE-NLPHVFGISLLGDYVYWTD 323 (357)
Q Consensus 261 -------~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~~~i~~~-~~~~p~gia~~~~~ly~td 323 (357)
......++|++++.++.| ++-...+.|..-|.+...+...+.. .......++.+++.+..+.
T Consensus 242 ~~~~~~~~~~~~v~~l~~sp~~~~l-asg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~ 311 (342)
T d1yfqa_ 242 RLNLKDTNLAYPVNSIEFSPRHKFL-YTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLAT 311 (342)
T ss_dssp CCCTTCCSSCCCEEEEEECTTTCCE-EEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEE
T ss_pred eeccCCCcccccceeEEecCCccEE-EEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEE
Confidence 112234689998655554 5545567899888865443222221 1112234444556665543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.66 E-value=1.4 Score=39.31 Aligned_cols=158 Identities=11% Similarity=0.078 Sum_probs=81.3
Q ss_pred CCeEEE--EeCCCC--eEEEEEcCCCceEEEecCC----CC-CceEEEEeCCCCEEEE---EeCCCCCCeEEEEecC---
Q psy13635 187 ARNLYW--TDTGTD--RIEVCRLEGTHRKVLVNTD----LV-EPRAITLSPAHGYLFW---SDWNEKRPKIERSLLN--- 251 (357)
Q Consensus 187 ~~~lY~--td~~~~--~I~~~~~~g~~~~~~~~~~----~~-~P~giavd~~~g~Ly~---~d~~~~~~~I~~~~~d--- 251 (357)
++++++ .+...+ .|..++......+.+..+. +. ......+.+.++.++| ++..+ ..+++.+.+.
T Consensus 265 d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g-~~~ly~~~~~~~~ 343 (465)
T d1xfda1 265 STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGG-RGKFYHITVSSSQ 343 (465)
T ss_dssp SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSS-SSCEEEEEEECSS
T ss_pred CCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecc-cCceEEEEecccc
Confidence 344543 444433 6777888766555554321 11 1223456666554443 33333 2577766543
Q ss_pred ----CCceEEEeeCCCCCceE-EEEecCCCEEEEEeC----CCCeEEEEeCCCCCeEEEecCCCC---ceEEEEEE--CC
Q psy13635 252 ----GGERVLLVKDRLGWPNG-ITLDVDNEKLYWCDA----KTDKIEMIDFDGNNRRELINENLP---HVFGISLL--GD 317 (357)
Q Consensus 252 ----g~~~~~~~~~~l~~P~g-iaid~~~~~lY~~d~----~~~~I~~~~~dG~~~~~i~~~~~~---~p~gia~~--~~ 317 (357)
|...+.+. .+--.... +++|..++.||++-. ....+++++++|+.....+...+. .-..+.+. +.
T Consensus 344 ~~~~~~~~~~LT-~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~ 422 (465)
T d1xfda1 344 PNSSNDNIQSIT-SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMD 422 (465)
T ss_dssp CCSSSCCCCBSC-CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSS
T ss_pred ccCCCceeEEec-cCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCC
Confidence 22222222 22112233 478988999999864 344699999999765443332111 12344554 34
Q ss_pred EEEEEeCCC--CeEEEEeCccCceeEEEecc
Q psy13635 318 YVYWTDWQR--RSIDRVNKITGNDREVIIER 346 (357)
Q Consensus 318 ~ly~td~~~--~~I~~~~~~~g~~~~~i~~~ 346 (357)
++..+-.+. -.+..++..+|+.+..|.++
T Consensus 423 y~v~~~s~~~~P~~~~~~~~~~~~~~~Le~N 453 (465)
T d1xfda1 423 FFLLKCEGPGVPMVTVHNTTDKKKMFDLETN 453 (465)
T ss_dssp EEEEECCSSSSCCEEEEETTTCCEEEEEECC
T ss_pred EEEEEeecCCCCeEEEEECCCCCEEEEEcCC
Confidence 433333332 33555665578877776543
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.13 E-value=1.2 Score=36.20 Aligned_cols=251 Identities=12% Similarity=-0.025 Sum_probs=123.9
Q ss_pred CcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEE--eCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCC
Q psy13635 71 EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI--TNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG 148 (357)
Q Consensus 71 ~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~--~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g 148 (357)
....+|+|+|.++.|..+. .++.|+..+++.... ..... ...-.....+++.+.++.+.++-...+.|...+...
T Consensus 12 d~I~~l~fsp~~~~L~s~s-~Dg~v~iwd~~~~~~--~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~ 88 (342)
T d1yfqa_ 12 DYISDIKIIPSKSLLLITS-WDGSLTVYKFDIQAK--NVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG 88 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEE-TTSEEEEEEEETTTT--EEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred CCEEEEEEeCCCCEEEEEE-CCCeEEEEEccCCCc--ceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccc
Confidence 3578999999777666554 567777777665431 12221 122334678888877777777776778888888766
Q ss_pred CceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCC-C-ceEEEecC----CCCCce
Q psy13635 149 KKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEG-T-HRKVLVNT----DLVEPR 222 (357)
Q Consensus 149 ~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g-~-~~~~~~~~----~~~~P~ 222 (357)
........... ...........++...++....+.+...++.. . ........ ......
T Consensus 89 ~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 152 (342)
T d1yfqa_ 89 SPSFQALTNNE----------------ANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNK 152 (342)
T ss_dssp SSSEEECBSCC----------------CCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCC
T ss_pred ccccccccccc----------------cccccccccccccccccccccccccceeeccccccceeeecccccccccceee
Confidence 55443322111 01111222222334444444445666655432 1 11111111 111233
Q ss_pred EEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceE--E-EeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeCCCCCe-
Q psy13635 223 AITLSPAHGYLFWSDWNEKRPKIERSLLNGGERV--L-LVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDFDGNNR- 298 (357)
Q Consensus 223 giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~--~-~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~dG~~~- 298 (357)
...+.+....+...... +.|...++...... . ............+..+.++..+.+-...+.+.....+....
T Consensus 153 ~~~~~~~~~~~~~~~~d---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~ 229 (342)
T d1yfqa_ 153 IFTMDTNSSRLIVGMNN---SQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD 229 (342)
T ss_dssp EEEEEECSSEEEEEEST---TEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCS
T ss_pred eeeeeccCCceeeecCC---CcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcce
Confidence 44555544555555544 46666666543221 1 11111222333344334445555555556666655543211
Q ss_pred ------EEEec-----C---CCCceEEEEEE-CCEEEEEeCCCCeEEEEeCccCceeEEE
Q psy13635 299 ------RELIN-----E---NLPHVFGISLL-GDYVYWTDWQRRSIDRVNKITGNDREVI 343 (357)
Q Consensus 299 ------~~i~~-----~---~~~~p~gia~~-~~~ly~td~~~~~I~~~~~~~g~~~~~i 343 (357)
..... . ......+|++. .+.++.|-...+.|..-+..+++....+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~ 289 (342)
T d1yfqa_ 230 YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289 (342)
T ss_dssp TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred eeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEe
Confidence 11110 0 11123466776 3555566666678887777666655443
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.39 E-value=3.2 Score=36.26 Aligned_cols=103 Identities=9% Similarity=-0.066 Sum_probs=62.0
Q ss_pred EEEEeCCcEEEEEcCCCCcceEecc-C----CCcEEEEEEEccCCEEEEEeC--------CCCeEEEEEcCCCCcceeEE
Q psy13635 44 LLFATSKDIRIANLSRPLKPVTIIK-D----LEEGAAIDYYYKKSMVCWTDH--------GTEMISCCTFDGNNVGSKHN 110 (357)
Q Consensus 44 l~~~~~~~i~~~~~~~~~~~~~~~~-~----~~~~~~i~~d~~~~~ly~~d~--------~~~~I~~~~~~g~~~~~~~~ 110 (357)
+++...+.|..+|+.++....++.. . .....++.|.|+..+|.++.. ..+.++..++.+.. ..
T Consensus 30 ~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~----~~ 105 (470)
T d2bgra1 30 YLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ----LI 105 (470)
T ss_dssp EEEESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE----EC
T ss_pred EEEEcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc----cc
Confidence 4456677899999987544333321 1 234678889998888876531 12456677777663 22
Q ss_pred EEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceE
Q psy13635 111 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRK 152 (357)
Q Consensus 111 ~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~ 152 (357)
.+...-.....+++.|.++.|.+.. ++.++..+..+....
T Consensus 106 ~l~~~~~~~~~~~~SPDG~~ia~~~--~~~l~~~~~~~g~~~ 145 (470)
T d2bgra1 106 TEERIPNNTQWVTWSPVGHKLAYVW--NNDIYVKIEPNLPSY 145 (470)
T ss_dssp CSSCCCTTEEEEEECSSTTCEEEEE--TTEEEEESSTTSCCE
T ss_pred ccccCCccccccccccCcceeeEee--cccceEEECCCCcee
Confidence 2222333455667777777777754 346666666655443
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.25 E-value=2.3 Score=34.33 Aligned_cols=264 Identities=8% Similarity=0.032 Sum_probs=130.9
Q ss_pred EEEEEe-CCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCc-CCce
Q psy13635 43 MLLFAT-SKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGL-ITPD 120 (357)
Q Consensus 43 ~l~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~-~~p~ 120 (357)
+|+-+. +..|+..|+.................++++.+ + +.++-..++.+......... ........ ....
T Consensus 29 ~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~--~-~l~s~s~D~~~~~~~~~~~~----~~~~~~~~~~~~~ 101 (342)
T d2ovrb2 29 RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--N-IIISGSTDRTLKVWNAETGE----CIHTLYGHTSTVR 101 (342)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET--T-EEEEEETTSCEEEEETTTTE----EEEEECCCSSCEE
T ss_pred EEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC--C-ccccceeccccccccccccc----ceecccccceeEe
Confidence 344333 45688899876443333444455678888875 4 44455556677766666553 22222211 1112
Q ss_pred eEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeE
Q psy13635 121 GLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRI 200 (357)
Q Consensus 121 glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I 200 (357)
.... ....+. .....+.|...+.............. ....... .......+....+.|
T Consensus 102 ~~~~--~~~~~~-~~~~d~~i~~~~~~~~~~~~~~~~~~------------------~~~~~~~-~~~~~~~~~~~d~~i 159 (342)
T d2ovrb2 102 CMHL--HEKRVV-SGSRDATLRVWDIETGQCLHVLMGHV------------------AAVRCVQ-YDGRRVVSGAYDFMV 159 (342)
T ss_dssp EEEE--ETTEEE-EEETTSEEEEEESSSCCEEEEEECCS------------------SCEEEEE-ECSSCEEEEETTSCE
T ss_pred eeec--cccccc-ccccceeEEEeecccccceeeeeccc------------------ccceeec-cccceeeeecCCCeE
Confidence 2222 233333 33335566666655443333322111 1111122 122333334444567
Q ss_pred EEEEcCCCceEEEecCCCCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEE
Q psy13635 201 EVCRLEGTHRKVLVNTDLVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYW 280 (357)
Q Consensus 201 ~~~~~~g~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~ 280 (357)
...+............. ......+.+....+..+... +.|...++............-....+++.+ ++.| +
T Consensus 160 ~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~l~s~~~d---g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l-~ 231 (342)
T d2ovrb2 160 KVWDPETETCLHTLQGH--TNRVYSLQFDGIHVVSGSLD---TSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNIL-V 231 (342)
T ss_dssp EEEEGGGTEEEEEECCC--SSCEEEEEECSSEEEEEETT---SCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEE-E
T ss_pred EEeecccceeeEEEcCc--ccccccccCCCCEEEEEeCC---CeEEEeecccceeeeEecccccceeEEecC--CCEE-E
Confidence 77766544433333222 22333344334455544443 477777776655444333332334555554 4444 4
Q ss_pred EeCCCCeEEEEeCCCCCeEEEecCCCC---ceEEEEEECCEEEEEeCCCCeEEEEeCccCceeEEEe
Q psy13635 281 CDAKTDKIEMIDFDGNNRRELINENLP---HVFGISLLGDYVYWTDWQRRSIDRVNKITGNDREVII 344 (357)
Q Consensus 281 ~d~~~~~I~~~~~dG~~~~~i~~~~~~---~p~gia~~~~~ly~td~~~~~I~~~~~~~g~~~~~i~ 344 (357)
+-...+.|...+.........+..... ....++.+++.+ ++-...+.|...+..+|+....+.
T Consensus 232 s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~s~Dg~i~iwd~~tg~~i~~~~ 297 (342)
T d2ovrb2 232 SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFV-ITSSDDGTVKLWDLKTGEFIRNLV 297 (342)
T ss_dssp EEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEE-EEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEcCCCEEEEEecccccccccccccceeeeceeecccCCCee-EEEcCCCEEEEEECCCCCEEEEEe
Confidence 445567898888876554444433222 334444545544 444456888888887888766554
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.08 E-value=2.3 Score=33.99 Aligned_cols=182 Identities=10% Similarity=0.013 Sum_probs=96.0
Q ss_pred eecCCCCeEEEEEeCCcEEEEEcCCCCcceEeccCCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeC
Q psy13635 35 LSHHVAAQMLLFATSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN 114 (357)
Q Consensus 35 ~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 114 (357)
+...++...++......+...+....... .....-... .++.+.++.+.++....+.++..++.+.. .......
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~---~~~~~~~ 159 (287)
T d1pgua2 86 ASANNDGFTAVLTNDDDLLILQSFTGDII-KSVRLNSPG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLE---VSFDLKT 159 (287)
T ss_dssp EEECSSSEEEEEETTSEEEEEETTTCCEE-EEEECSSCE--EEEEECSSEEEEEETTTSCEEEEETTEEE---EEEECSS
T ss_pred eeeccCCceEEEeecccceeeeccceeee-eecccccee--eeeeccCcceeeeccccceeeeeeccccc---eeeeeee
Confidence 34444555566666666777776553222 222222223 34556677787777666667766665442 1222222
Q ss_pred -CcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeC--------
Q psy13635 115 -GLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDW-------- 185 (357)
Q Consensus 115 -~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~-------- 185 (357)
....+..+++++.+..|...+ ..+.|...++............ . ......+++.+
T Consensus 160 ~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~--h-------------~~~v~~~~~~p~~~~~~~~ 223 (287)
T d1pgua2 160 PLRAKPSYISISPSETYIAAGD-VMGKILLYDLQSREVKTSRWAF--R-------------TSKINAISWKPAEKGANEE 223 (287)
T ss_dssp CCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEEECCSCC--C-------------SSCEEEEEECCCC------
T ss_pred ccCCceeEEEeccCcccccccc-ccccccceeecccccccccccc--c-------------ccccceeeecccccccccc
Confidence 224567899997665555444 5678888887654332211000 0 01123333332
Q ss_pred -CCCeEEEEeCCCCeEEEEEcCC-CceEEEecCCCCCceEEEEeCCCCEEEEEeCC
Q psy13635 186 -VARNLYWTDTGTDRIEVCRLEG-THRKVLVNTDLVEPRAITLSPAHGYLFWSDWN 239 (357)
Q Consensus 186 -~~~~lY~td~~~~~I~~~~~~g-~~~~~~~~~~~~~P~giavd~~~g~Ly~~d~~ 239 (357)
..+.++++....+.|...++.. ...............++++.+. +.|+-+...
T Consensus 224 ~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~-~~l~s~g~D 278 (287)
T d1pgua2 224 EIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP-STLVSSGAD 278 (287)
T ss_dssp CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEET-TEEEEEETT
T ss_pred cCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCC-CEEEEEECC
Confidence 2345555666666788777653 3333333333456788888864 666555443
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.72 E-value=3.2 Score=33.05 Aligned_cols=147 Identities=18% Similarity=0.074 Sum_probs=81.5
Q ss_pred eEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEecCC-CCCceEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEE
Q psy13635 180 GVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLVNTD-LVEPRAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLL 258 (357)
Q Consensus 180 glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~~~~-~~~P~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~ 258 (357)
..++.+.++.+.++....+.|...+............. ...+..++++|...+|...... +.|...+.........
T Consensus 123 ~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d---g~i~i~d~~~~~~~~~ 199 (287)
T d1pgua2 123 GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVM---GKILLYDLQSREVKTS 199 (287)
T ss_dssp EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETT---SCEEEEETTTTEEEEC
T ss_pred eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccccccc---ccccceeecccccccc
Confidence 44555556677777666667777776654433333222 2357889999987777777665 5777777764433221
Q ss_pred -eeCCCCCceEEEEec---------CCCEEEEEeCCCCeEEEEeCCC-CCeEEEecCCCCceEEEEEE-CCEEEEEeCCC
Q psy13635 259 -VKDRLGWPNGITLDV---------DNEKLYWCDAKTDKIEMIDFDG-NNRRELINENLPHVFGISLL-GDYVYWTDWQR 326 (357)
Q Consensus 259 -~~~~l~~P~giaid~---------~~~~lY~~d~~~~~I~~~~~dG-~~~~~i~~~~~~~p~gia~~-~~~ly~td~~~ 326 (357)
..........+++.+ .++.++.+-...+.|+..+... ...............++++. ++.++-+. ..
T Consensus 200 ~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~l~s~g-~D 278 (287)
T d1pgua2 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSG-AD 278 (287)
T ss_dssp CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTEEEEEE-TT
T ss_pred cccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCEEEEEE-CC
Confidence 111123345666543 2334455555566777777643 33333333344556777765 45544433 34
Q ss_pred CeEE
Q psy13635 327 RSID 330 (357)
Q Consensus 327 ~~I~ 330 (357)
+.|.
T Consensus 279 ~~v~ 282 (287)
T d1pgua2 279 ACIK 282 (287)
T ss_dssp SCEE
T ss_pred CeEE
Confidence 5543
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.73 E-value=5 Score=32.35 Aligned_cols=236 Identities=9% Similarity=-0.003 Sum_probs=116.6
Q ss_pred EEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEE
Q psy13635 75 AIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVL 154 (357)
Q Consensus 75 ~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~ 154 (357)
.++++ ++. ..+-..++.|+..++.... ....+...-....++++.+ ++ .+++-...+.|...+.........
T Consensus 18 c~~~~--~~~-l~tgs~Dg~i~vWd~~~~~---~~~~l~~H~~~V~~l~~s~-~~-~l~s~s~D~~i~iw~~~~~~~~~~ 89 (355)
T d1nexb2 18 CLQFE--DNY-VITGADDKMIRVYDSINKK---FLLQLSGHDGGVWALKYAH-GG-ILVSGSTDRTVRVWDIKKGCCTHV 89 (355)
T ss_dssp EEEEE--TTE-EEEEETTTEEEEEETTTTE---EEEEEECCSSCEEEEEEET-TT-EEEEEETTCCEEEEETTTTEEEEE
T ss_pred EEEEC--CCE-EEEEeCCCeEEEEECCCCc---EEEEEECCCCCEEEEEEcC-CC-EEEEEecccccccccccccccccc
Confidence 45554 444 4455567788888887553 2333433345678888875 44 455666678888888776554333
Q ss_pred EecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEE----------ecCCCCCc---
Q psy13635 155 YWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVL----------VNTDLVEP--- 221 (357)
Q Consensus 155 ~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~----------~~~~~~~P--- 221 (357)
.......... ...... .++...++....+.|...++........ .......+
T Consensus 90 ~~~~~~~~~~--------------~~~~~~-~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (355)
T d1nexb2 90 FEGHNSTVRC--------------LDIVEY-KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 154 (355)
T ss_dssp ECCCSSCEEE--------------EEEEEE-TTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEE
T ss_pred cccccccccc--------------cccccc-cccceeeeecCCCcEEEEEccCCceeccccccceeccceecccccccee
Confidence 2221110000 011111 2233333434445555555443221110 00000000
Q ss_pred --------eEEEEeCCCCEEEEEeCCCCCCeEEEEecCCCceEEEeeCCCCCceEEEEecCCCEEEEEeCCCCeEEEEeC
Q psy13635 222 --------RAITLSPAHGYLFWSDWNEKRPKIERSLLNGGERVLLVKDRLGWPNGITLDVDNEKLYWCDAKTDKIEMIDF 293 (357)
Q Consensus 222 --------~giavd~~~g~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~~l~~P~giaid~~~~~lY~~d~~~~~I~~~~~ 293 (357)
.-.+..+....+...... +.|...+...................+.+++.+..++... ..+.|...+.
T Consensus 155 ~~~~~~~~~v~~~~~~~~~~~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~i~d~ 230 (355)
T d1nexb2 155 GVLRGHMASVRTVSGHGNIVVSGSYD---NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS-MDTTIRIWDL 230 (355)
T ss_dssp EEEECCSSCEEEEEEETTEEEEEETT---SCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEE-TTSCEEEEET
T ss_pred eeeeeccccccccccccceeeeeccc---ceeeeeecccccceeeeeccccccccccccccceeeeccc-ccceEEeeec
Confidence 011122222334443333 4666666665544444444445567888886666655544 5577888887
Q ss_pred CCCCeEEEecCCCCceEEEEEECCEEEEEeCCCCeEEEEeCccCc
Q psy13635 294 DGNNRRELINENLPHVFGISLLGDYVYWTDWQRRSIDRVNKITGN 338 (357)
Q Consensus 294 dG~~~~~i~~~~~~~p~gia~~~~~ly~td~~~~~I~~~~~~~g~ 338 (357)
............-.....+++.++.++.. ...+.|...+..+++
T Consensus 231 ~~~~~~~~~~~h~~~v~~~~~~~~~l~~~-~~dg~i~iwd~~~~~ 274 (355)
T d1nexb2 231 ENGELMYTLQGHTALVGLLRLSDKFLVSA-AADGSIRGWDANDYS 274 (355)
T ss_dssp TTCCEEEEECCCSSCCCEEEECSSEEEEE-CTTSEEEEEETTTCC
T ss_pred cccccccccccccccccccccccceeeee-ecccccccccccccc
Confidence 65544444433333445666666555444 455777777764444
|
| >d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase family: Oligoxyloglucan reducing end-specific cellobiohydrolase domain: Oligoxyloglucan reducing end-specific cellobiohydrolase species: Yeast (Geotrichum sp. M128) [TaxId: 203496]
Probab=84.61 E-value=11 Score=32.21 Aligned_cols=170 Identities=12% Similarity=0.060 Sum_probs=87.8
Q ss_pred CCCcEEEEEEEccCCEEEEEeCCCCeEEEEEcCCCCcceeEEEEeCC-------cCCceeEEEEcCC-CeEEEEeCC---
Q psy13635 69 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNG-------LITPDGLAIDWLT-EKLYWTDSE--- 137 (357)
Q Consensus 69 ~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~-------~~~p~glavd~~~-~~ly~td~~--- 137 (357)
......+|+++|.+..+.++-...+.|+|..-.|.. .+.+... .....+||+|+.+ +.||+.-..
T Consensus 10 ~gg~~~~i~~~P~~~~~~ya~~~~gGv~~S~dgG~t----W~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~ 85 (427)
T d2ebsa1 10 GGGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSK----WIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVG 85 (427)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTE----EEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTT
T ss_pred CCCcEEEEEECCCCCCEEEEEecCCCEEEEECCCCc----eEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccC
Confidence 345678999999765555554455668876644442 4444322 2245689999865 456665321
Q ss_pred --CCEEEEEEcCCCce-EEEEecCCCCcceeeeeccCcccccCCceEEEeCCCCeEEEEeCCCCeEEEEEcCCCceEEEe
Q psy13635 138 --TNKLEVSSLDGKKR-KVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVARNLYWTDTGTDRIEVCRLEGTHRKVLV 214 (357)
Q Consensus 138 --~~~I~~~~~~g~~~-~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~~lY~td~~~~~I~~~~~~g~~~~~~~ 214 (357)
...|.+ +.||... +.+. .....+.. .........|+|||.+....|+....+.|++..-.|..=+.+.
T Consensus 86 ~~~~gi~~-S~DgG~TW~~~~-~~~~~~~~-------~~~~~~~~~i~v~P~~~~~v~~~~~~~gl~~S~D~G~tW~~~~ 156 (427)
T d2ebsa1 86 DEWAAFYV-SEDRGQSFTIYE-SPFPMGAN-------DMGRNNGERLAVNPFNSNEVWMGTRTEGIWKSSDRAKTWTNVT 156 (427)
T ss_dssp SSCCEEEE-ESSTTSEEEEEE-CSSCCCTT-------STTTTSCCCEEECTTCTTCEEEECSSSCEEEESSTTSSCEECT
T ss_pred CcCccEEE-eCCCCccceeec-CCcccCcc-------ccCccceeEEEECCCccCcccccccccceeeecCCCceeeecc
Confidence 234554 4454433 2222 11110000 0011234568999886544444444456777554454333222
Q ss_pred cC--C---CCCceEEEEeCCC-CEEEEEeCCCCCCeEEEEecCCC
Q psy13635 215 NT--D---LVEPRAITLSPAH-GYLFWSDWNEKRPKIERSLLNGG 253 (357)
Q Consensus 215 ~~--~---~~~P~giavd~~~-g~Ly~~d~~~~~~~I~~~~~dg~ 253 (357)
.. . ......|++||.+ +.||.+.... ..|++..=.|.
T Consensus 157 ~~~~~~~~~~~~~~i~~~p~~~~~~y~~~~~~--~giy~S~DgG~ 199 (427)
T d2ebsa1 157 SIPDAFTNGIGYTSVIFDPERNGTIYASATAP--QGMYVTHDGGV 199 (427)
T ss_dssp TSSCCCCSSSCEEEEEECTTSTTCEEEEESST--TCEEEESSTTS
T ss_pred cCcccccCCccceEEEecccccceeeeeeeec--ccceeccCCCC
Confidence 11 1 1224578898864 4677766553 47877553343
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=82.53 E-value=9.7 Score=30.00 Aligned_cols=106 Identities=10% Similarity=0.013 Sum_probs=59.6
Q ss_pred CCeEEEEE-eCCcEEEEEcCCCCcceEeccCCCcEEEEEEEccC--CEE-EEEeCCC----CeEEEEEcC--CCCcceeE
Q psy13635 40 AAQMLLFA-TSKDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKK--SMV-CWTDHGT----EMISCCTFD--GNNVGSKH 109 (357)
Q Consensus 40 ~~~~l~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~--~~l-y~~d~~~----~~I~~~~~~--g~~~~~~~ 109 (357)
..+.++++ +...+-..-+.|++...+.- .|++...+|.. +.| |.-|..- +.|+.+++. |.+ .
T Consensus 25 ~d~ll~~~~seG~vni~~l~g~~~vkLtk----ePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE----~ 96 (313)
T d2hu7a1 25 GDKLLVVGFSEGSVNAYLYDGGETVKLNR----EPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEE----Q 96 (313)
T ss_dssp TTEEEEEEEETTEEEEEEESSSSCEECCS----SCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCE----E
T ss_pred CCcEEEEEeccceEEEEEEeCCEEEEEec----ccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCee----e
Confidence 45566666 34555555666644444432 33333334332 333 4446543 468999988 543 4
Q ss_pred EEEeCCcCCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEE
Q psy13635 110 NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLY 155 (357)
Q Consensus 110 ~~~~~~~~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~ 155 (357)
.+.........+++.| ++++-++-...++..-.-++|...+.+.
T Consensus 97 ~i~spk~vRI~S~~yd--dk~vvF~Gased~~~LYviegGklrkL~ 140 (313)
T d2hu7a1 97 RLEAVKPMRILSGVDT--GEAVVFTGATEDRVALYALDGGGLRELA 140 (313)
T ss_dssp ECTTSCSBEEEEEEEC--SSCEEEEEECSSCEEEEEEETTEEEEEE
T ss_pred EecCCceEEEEEeeec--CceEEEecccCCceEEEEEeCCceeeec
Confidence 4444443456678887 6667666666666666666666555443
|
| >d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase family: Oligoxyloglucan reducing end-specific cellobiohydrolase domain: Oligoxyloglucan reducing end-specific cellobiohydrolase species: Yeast (Geotrichum sp. M128) [TaxId: 203496]
Probab=81.77 E-value=14 Score=31.43 Aligned_cols=167 Identities=11% Similarity=0.070 Sum_probs=87.3
Q ss_pred CCceeEEEEcCCCeEEEEeCCCCEEEEEEcCCCceEEEEecCCCCcceeeeeccCcccccCCceEEEeCCCC-eEEEEeC
Q psy13635 117 ITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIASYKLPTIEVEHPDGVAVDWVAR-NLYWTDT 195 (357)
Q Consensus 117 ~~p~glavd~~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i~~~~~~~~~~~~p~glavD~~~~-~lY~td~ 195 (357)
....+|++||.+.++.++-...+-|++-.=.|..=+.+. ..... .........+|++||.+. .||+...
T Consensus 12 g~~~~i~~~P~~~~~~ya~~~~gGv~~S~dgG~tW~~~~-~~~~~---------~~~~~~~~~~iavdp~np~~vy~~tg 81 (427)
T d2ebsa1 12 GYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLN-DFIEA---------QDMNIMGTESIALDPNNPDRLYLAQG 81 (427)
T ss_dssp SCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESC-TTCCG---------GGGGGCSEEEEEEETTEEEEEEEEEC
T ss_pred CcEEEEEECCCCCCEEEEEecCCCEEEEECCCCceEECC-CCCCC---------CCcccccEeEEEECCCCCCEEEEEec
Confidence 456789998876555555444555776543333222221 11000 011223456899998874 5665532
Q ss_pred C-----CCeEEEEEcCCCceEEEecC--------CCCCceEEEEeCCCC-EEEEEeCCCCCCeEEEEecCCCceEEEeeC
Q psy13635 196 G-----TDRIEVCRLEGTHRKVLVNT--------DLVEPRAITLSPAHG-YLFWSDWNEKRPKIERSLLNGGERVLLVKD 261 (357)
Q Consensus 196 ~-----~~~I~~~~~~g~~~~~~~~~--------~~~~P~giavd~~~g-~Ly~~d~~~~~~~I~~~~~dg~~~~~~~~~ 261 (357)
. ...|++..-.|+.=..+... .......|+++|.+. .||++... +.|++..=.|..-+.+...
T Consensus 82 ~~~~~~~~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~---~gl~~S~D~G~tW~~~~~~ 158 (427)
T d2ebsa1 82 RYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRT---EGIWKSSDRAKTWTNVTSI 158 (427)
T ss_dssp SCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSS---SCEEEESSTTSSCEECTTS
T ss_pred cccCCcCccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccccc---cceeeecCCCceeeecccC
Confidence 1 23577665445543333221 112335699998754 56665433 3677755444433332211
Q ss_pred --CC---CCceEEEEecC-CCEEEEEeCCCCeEEEEeCCCC
Q psy13635 262 --RL---GWPNGITLDVD-NEKLYWCDAKTDKIEMIDFDGN 296 (357)
Q Consensus 262 --~l---~~P~giaid~~-~~~lY~~d~~~~~I~~~~~dG~ 296 (357)
.. .....|++|+. .+.||.+....+.|++..-.|.
T Consensus 159 ~~~~~~~~~~~~i~~~p~~~~~~y~~~~~~~giy~S~DgG~ 199 (427)
T d2ebsa1 159 PDAFTNGIGYTSVIFDPERNGTIYASATAPQGMYVTHDGGV 199 (427)
T ss_dssp SCCCCSSSCEEEEEECTTSTTCEEEEESSTTCEEEESSTTS
T ss_pred cccccCCccceEEEecccccceeeeeeeecccceeccCCCC
Confidence 11 12346788764 4568887766677877654443
|