Psyllid ID: psy13645

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-
Protein Sequence
MKERLREGDHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQKSEKDEDDIEANLLLPEGVPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGDKGKDYTY
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHcccccccccccccEEEEEEEEEEccccccccccccccccHHHHHccccccccccccEEEEEEEEEEEEcccccccHHHHHHHHHccccccccccccEEEEEEccccccEEEEccccccccccEEEEEEEccccccEEEEEEEEccccccEEEEEEEEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEcccccccHHHEEEEccccccccccccEEEEEEEEEEEccccccccccccccHHHHHHHcccccccccccccEEEEEEEEEccccccccHHHHHHHHHHHccccccccccEEEEEEccccccEEEEEccccccHcHEEEEHHHcccHccEEEEEEEEcccccccEEEEEEEEHHHHcccccccccccc
Coil and Loop (DISEMBL)
mkerlregdhqfyhkwalltdpddiaggpkgylkcdisvigkgdtvkipqksekdeddieanlllpegvpleRQHARFIIRIYRadglpkmnsSLVANVKKaftgetkdlvdpyvqvsfagltgktsvkknsynpvwneqiifsemfpplcsrikiqlrdndpvnntvIGTHYIdlknisndgdkgkdyty
Flexible Loop (DISEMBL)
MKERLREGDHQFYHKWALLTDPDDIAGGPKGYLKCDIsvigkgdtvkipqksekdeddiEANLllpegvplerQHARFIIRIYRadglpkmnsSLVANVKKAFtgetkdlvdpYVQVSfagltgktsvkknsynpVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGthyidlknisndgdkgkdyty
Low Complexity Region (SEG)
MKERLREGDHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQKSEKDEDDIEANLLLPEGVPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGDKGKDYTY
Disordered region (IsUnstruct)
*********HQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTV**************ANLLLPEGVPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNI************
Disordered Region (DISOPRED)
****LREGDHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGD*****************NLLLPEGVPLERQHARFIIRIYRADGLPKMNS**********TGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGD*GK***Y
Disordered Region (DISEMBL)
********DHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQKSEKDEDDIEANLLLPEGVPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGDKGKDYTY
Disordered Region (DISPRO)
**ERLREGDHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQKSEKDEDDIEANLLLPEGVPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNIS***********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKERLREGDHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQKSEKDEDDIEANLLLPEGVPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGDKGKDYTY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	191	2.2.26 [Sep-21-2011]
Q5SPC5	1992	Otoferlin OS=Danio rerio	yes	N/A	0.931	0.089	0.709	5e-76
Q9ERC5	1993	Otoferlin OS=Rattus norve	yes	N/A	0.931	0.089	0.698	1e-75
Q9ESF1	1997	Otoferlin OS=Mus musculus	yes	N/A	0.931	0.089	0.698	2e-75
Q9HC10	1997	Otoferlin OS=Homo sapiens	yes	N/A	0.931	0.089	0.698	2e-75
Q2WGJ9	1857	Fer-1-like protein 6 OS=H	no	N/A	0.926	0.095	0.636	2e-64
A3KGK3	1992	Fer-1-like protein 4 OS=M	no	N/A	0.931	0.089	0.444	2e-38
A9Z1Z3	1794	Fer-1-like protein 4 OS=H	no	N/A	0.931	0.099	0.433	2e-37
O75923	2080	Dysferlin OS=Homo sapiens	no	N/A	0.921	0.084	0.401	4e-35
A6QQP7	2107	Dysferlin OS=Bos taurus G	no	N/A	0.921	0.083	0.390	2e-34
Q9ESD7	2090	Dysferlin OS=Mus musculus	no	N/A	0.921	0.084	0.395	3e-34

>sp|Q5SPC5|OTOF_DANRE Otoferlin OS=Danio rerio GN=otof PE=3 SV=1

 Score =  283 bits (724), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 127/179 (70%), Positives = 155/179 (86%), Gaps = 1/179 (0%)

Query: 9   DHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQK-SEKDEDDIEANLLLPE 67
           +HQF+HKWA+L+DPDDI  G KGY+KCDI+V+GKGD +K P K SE DEDDIE NLLLPE
Sbjct: 354 EHQFHHKWAMLSDPDDITTGCKGYVKCDIAVVGKGDNIKTPHKASEADEDDIEGNLLLPE 413

Query: 68  GVPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTS 127
           GVP ERQ ARF ++IYRA+GLPKMN+S++ANVKKAF GE +DLVDPYV V FAG  GKTS
Sbjct: 414 GVPSERQWARFYVKIYRAEGLPKMNTSIMANVKKAFIGENRDLVDPYVLVQFAGQKGKTS 473

Query: 128 VKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGDKG 186
           V+K+SY P+WNEQ+IF+EMFPPLC R+K+Q+RD+D VN+  IGTH+IDL+ +SNDGDKG
Sbjct: 474 VQKSSYEPIWNEQVIFTEMFPPLCRRLKVQIRDSDKVNDVAIGTHFIDLRKVSNDGDKG 532

Key calcium ion sensor involved in the Ca(2+)-triggered synaptic vesicle-plasma membrane fusion and in the control of neurotransmitter release at these output synapses.
Danio rerio (taxid: 7955)

>sp|Q9ERC5|OTOF_RAT Otoferlin OS=Rattus norvegicus GN=Otof PE=1 SV=2

 Score =  281 bits (720), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 125/179 (69%), Positives = 157/179 (87%), Gaps = 1/179 (0%)

Query: 9   DHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQKS-EKDEDDIEANLLLPE 67
           +HQF+HKWA+L+DPDDI+ G KGY+KCD++V+GKGD +K P K+ E DEDDIE NLLLPE
Sbjct: 364 EHQFHHKWAILSDPDDISAGLKGYVKCDVAVVGKGDNIKTPHKANETDEDDIEGNLLLPE 423

Query: 68  GVPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTS 127
           GVP ERQ ARF ++IYRA+GLP+MN+SL+ANVKKAF GE KDLVDPYVQV FAG  GKTS
Sbjct: 424 GVPPERQWARFYVKIYRAEGLPRMNTSLMANVKKAFIGENKDLVDPYVQVFFAGQKGKTS 483

Query: 128 VKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGDKG 186
           V+K+SY P+WNEQ++F+++FPPLC R+K+Q+RD+D VN+  IGTH+IDL+ ISNDGDKG
Sbjct: 484 VQKSSYEPLWNEQVVFTDLFPPLCKRMKVQIRDSDKVNDVAIGTHFIDLRKISNDGDKG 542

Key calcium ion sensor involved in the Ca(2+)-triggered synaptic vesicle-plasma membrane fusion and in the control of neurotransmitter release at these output synapses. Interacts in a calcium-dependent manner to the presynaptic SNARE proteins at ribbon synapses of cochlear inner hair cells (IHCs) to trigger exocytosis of neurotransmitter. Also essential to synaptic exocytosis in immature outer hair cells (OHCs). May also play a role within the recycling of endosomes.

Rattus norvegicus (taxid: 10116)

>sp|Q9ESF1|OTOF_MOUSE Otoferlin OS=Mus musculus GN=Otof PE=1 SV=1

 Score =  281 bits (719), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 125/179 (69%), Positives = 157/179 (87%), Gaps = 1/179 (0%)

Query: 9   DHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQKS-EKDEDDIEANLLLPE 67
           +HQF+HKWA+L+DPDDI+ G KGY+KCD++V+GKGD +K P K+ E DEDDIE NLLLPE
Sbjct: 348 EHQFHHKWAILSDPDDISAGLKGYVKCDVAVVGKGDNIKTPHKANETDEDDIEGNLLLPE 407

Query: 68  GVPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTS 127
           GVP ERQ ARF ++IYRA+GLP+MN+SL+ANVKKAF GE KDLVDPYVQV FAG  GKTS
Sbjct: 408 GVPPERQWARFYVKIYRAEGLPRMNTSLMANVKKAFIGENKDLVDPYVQVFFAGQKGKTS 467

Query: 128 VKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGDKG 186
           V+K+SY P+WNEQ++F+++FPPLC R+K+Q+RD+D VN+  IGTH+IDL+ ISNDGDKG
Sbjct: 468 VQKSSYEPLWNEQVVFTDLFPPLCKRMKVQIRDSDKVNDVAIGTHFIDLRKISNDGDKG 526

Key calcium ion sensor involved in the Ca(2+)-triggered synaptic vesicle-plasma membrane fusion and in the control of neurotransmitter release at these output synapses. Interacts in a calcium-dependent manner to the presynaptic SNARE proteins at ribbon synapses of cochlear inner hair cells (IHCs) to trigger exocytosis of neurotransmitter. Also essential to synaptic exocytosis in immature outer hair cells (OHCs). May also play a role within the recycling of endosomes.

Mus musculus (taxid: 10090)

>sp|Q9HC10|OTOF_HUMAN Otoferlin OS=Homo sapiens GN=OTOF PE=1 SV=3

 Score =  281 bits (719), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 125/179 (69%), Positives = 157/179 (87%), Gaps = 1/179 (0%)

Query: 9   DHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQKS-EKDEDDIEANLLLPE 67
           +HQF+HKWA+L+DPDDI+ G KGY+KCD++V+GKGD +K P K+ E DEDDIE NLLLPE
Sbjct: 349 EHQFHHKWAILSDPDDISSGLKGYVKCDVAVVGKGDNIKTPHKANETDEDDIEGNLLLPE 408

Query: 68  GVPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTS 127
           GVP ERQ ARF ++IYRA+GLP+MN+SL+ANVKKAF GE KDLVDPYVQV FAG  GKTS
Sbjct: 409 GVPPERQWARFYVKIYRAEGLPRMNTSLMANVKKAFIGENKDLVDPYVQVFFAGQKGKTS 468

Query: 128 VKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGDKG 186
           V+K+SY P+WNEQ++F+++FPPLC R+K+Q+RD+D VN+  IGTH+IDL+ ISNDGDKG
Sbjct: 469 VQKSSYEPLWNEQVVFTDLFPPLCKRMKVQIRDSDKVNDVAIGTHFIDLRKISNDGDKG 527

Key calcium ion sensor involved in the Ca(2+)-triggered synaptic vesicle-plasma membrane fusion and in the control of neurotransmitter release at these output synapses. Interacts in a calcium-dependent manner to the presynaptic SNARE proteins at ribbon synapses of cochlear inner hair cells (IHCs) to trigger exocytosis of neurotransmitter. Also essential to synaptic exocytosis in immature outer hair cells (OHCs). May also play a role within the recycling of endosomes.

Homo sapiens (taxid: 9606)

>sp|Q2WGJ9|FR1L6_HUMAN Fer-1-like protein 6 OS=Homo sapiens GN=FER1L6 PE=2 SV=2

 Score =  244 bits (624), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 114/179 (63%), Positives = 142/179 (79%), Gaps = 2/179 (1%)

Query: 10  HQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQKSEKDEDDIEANLLLPEGV 69
           HQF +KWALLTDP DI  G KGYLKCDISV+GKGD +K   K+   E+ IE NLL+P G 
Sbjct: 177 HQFCNKWALLTDPGDIRTGTKGYLKCDISVMGKGDVLKTSPKTSDTEEPIEKNLLIPNGF 236

Query: 70  PLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVK 129
           PLER  ARF +R+Y+A+GLPKMNSS++ANV KAF G++KDLVDP+V+VSFAG  G+T+V+
Sbjct: 237 PLERPWARFYVRLYKAEGLPKMNSSIMANVTKAFVGDSKDLVDPFVEVSFAGQMGRTTVQ 296

Query: 130 KNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISN--DGDKG 186
           KN  +PVW+EQ+IF EMFPPLC R+KIQ+ D   +N+  + TH+IDLK ISN  DGDKG
Sbjct: 297 KNCADPVWHEQVIFKEMFPPLCRRVKIQVWDEGSMNDVALATHFIDLKKISNEQDGDKG 355

Homo sapiens (taxid: 9606)

>sp|A3KGK3|FR1L4_MOUSE Fer-1-like protein 4 OS=Mus musculus GN=Fer1l4 PE=2 SV=3

 Score =  158 bits (399), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 80/180 (44%), Positives = 110/180 (61%), Gaps = 2/180 (1%)

Query: 5   LREGDHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQKSEK-DEDDIEANL 63
           L + D  F+ KWA L DP D   G KG++K  +SV  +GD    P         DIE NL
Sbjct: 318 LDQPDGHFHQKWAPLHDPRDTRAGTKGFVKITLSVRARGDLPLPPPPPCPGTSSDIEKNL 377

Query: 64  LLPEGVPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLT 123
           LLP GV  ER  AR  +R+YRA+GLP + + L+ ++ +A   +   L+DPYV+VSF G  
Sbjct: 378 LLPHGVQAERPWARLRVRVYRAEGLPTVRTGLLGSLARALHDQNV-LLDPYVRVSFLGQQ 436

Query: 124 GKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDG 183
           G+TSV+     P WNEQ+ F E+FPPL   +++QLRDN P+ +  + TH +DL+ ISN G
Sbjct: 437 GETSVRGEETAPKWNEQLSFVELFPPLTRSLRLQLRDNAPLVDVALATHVLDLRQISNSG 496

Mus musculus (taxid: 10090)

>sp|A9Z1Z3|FR1L4_HUMAN Fer-1-like protein 4 OS=Homo sapiens GN=FER1L4 PE=2 SV=1

 Score =  155 bits (391), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 78/180 (43%), Positives = 109/180 (60%), Gaps = 2/180 (1%)

Query: 5   LREGDHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQKSEKDE-DDIEANL 63
           L + D QFY +W  L DP D   G KG++K  +SV  +GD              DIE NL
Sbjct: 117 LDQPDGQFYQRWVPLHDPRDTRAGTKGFIKVTLSVRARGDLPPPMLPPAPGHCSDIEKNL 176

Query: 64  LLPEGVPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLT 123
           LLP GVP ER  AR  +R+YRA+GLP +   L+ ++ +A   + + LV+PYV+VSF G  
Sbjct: 177 LLPRGVPAERPWARLRVRLYRAEGLPALRLGLLGSLVRALH-DQRVLVEPYVRVSFLGQE 235

Query: 124 GKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDG 183
           G+TSV   +  P WNEQ+ F E+FPPL   +++QLRD+ P+ +  + TH  DL+ IS+ G
Sbjct: 236 GETSVSAEAAAPEWNEQLSFVELFPPLTRSLRLQLRDDAPLVDAALATHVPDLRRISHPG 295

Homo sapiens (taxid: 9606)

>sp|O75923|DYSF_HUMAN Dysferlin OS=Homo sapiens GN=DYSF PE=1 SV=1

 Score =  147 bits (372), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 73/182 (40%), Positives = 117/182 (64%), Gaps = 6/182 (3%)

Query: 6   REGDHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQK-SEKDEDDIEANLL 64
           RE  H +  KW LL+DPDD + G +GYLK  + V+G GD   + +K   +D++DIE+NLL
Sbjct: 310 REPRHAYLRKWLLLSDPDDFSAGARGYLKTSLCVLGPGDEAPLERKDPSEDKEDIESNLL 369

Query: 65  LPEGVPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGET--KDLVDPYVQVSFAGL 122
            P GV L   H  F ++++RA+ LP+M+ +++ NVK+ F  E+  K+LVDP+V+VSFAG 
Sbjct: 370 RPTGVALRGAH--FCLKVFRAEDLPQMDDAVMDNVKQIFGFESNKKNLVDPFVEVSFAGK 427

Query: 123 TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPV-NNTVIGTHYIDLKNISN 181
              + + + + NP WN+ I    MFP +C +++I++ D D + +N ++ T Y+ +  IS 
Sbjct: 428 MLCSKILEKTANPQWNQNITLPAMFPSMCEKMRIRIIDWDRLTHNDIVATTYLSMSKISA 487

Query: 182 DG 183
            G
Sbjct: 488 PG 489

Key calcium ion sensor involved in the Ca(2+)-triggered synaptic vesicle-plasma membrane fusion. Plays a role in the sarcolemma repair mechanism of both skeletal muscle and cardiomyocytes that permits rapid resealing of membranes disrupted by mechanical stress.

Homo sapiens (taxid: 9606)

>sp|A6QQP7|DYSF_BOVIN Dysferlin OS=Bos taurus GN=DYSF PE=2 SV=1

 Score =  145 bits (365), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/182 (39%), Positives = 117/182 (64%), Gaps = 6/182 (3%)

Query: 6   REGDHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQK-SEKDEDDIEANLL 64
           RE  H +  KW LL+DPDD + G +GYLK  + V+G GD   + +K   +D++DIE+NLL
Sbjct: 312 REPRHAYLRKWLLLSDPDDFSAGARGYLKASLCVLGPGDEAPLERKDPSEDKEDIESNLL 371

Query: 65  LPEGVPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGET--KDLVDPYVQVSFAGL 122
            P GV L   H  F ++++RA+ LP+M+ +++ NV++ F  ++  K+LVDP+V+VSFAG 
Sbjct: 372 RPIGVALRGAH--FCLKVFRAEDLPQMDDAVMDNVRQIFGFDSNKKNLVDPFVEVSFAGK 429

Query: 123 TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPV-NNTVIGTHYIDLKNISN 181
              + + + + NP WN+ I    MFP +C +++I++ D D + +N ++ T Y+ +  IS 
Sbjct: 430 MLCSKILEKTANPQWNQSITLPAMFPSMCEKMRIRVVDWDRLTHNDIVATTYLSMSKISA 489

Query: 182 DG 183
            G
Sbjct: 490 SG 491

Key calcium ion sensor involved in the Ca(2+)-triggered synaptic vesicle-plasma membrane fusion. Plays a role in the sarcolemma repair mechanism of both skeletal muscle and cardiomyocytes that permits rapid resealing of membranes disrupted by mechanical stress.

Bos taurus (taxid: 9913)

>sp|Q9ESD7|DYSF_MOUSE Dysferlin OS=Mus musculus GN=Dysf PE=1 SV=3

 Score =  144 bits (363), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 72/182 (39%), Positives = 115/182 (63%), Gaps = 6/182 (3%)

Query: 6   REGDHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQK-SEKDEDDIEANLL 64
           RE  H +  KW LL+DPDD + G +GYLK  + V+G GD   + +K   +D++DIE NLL
Sbjct: 312 REPRHAYLRKWLLLSDPDDFSAGARGYLKASLCVLGPGDEAPLDKKDPSEDKEDIEGNLL 371

Query: 65  LPEGVPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGET--KDLVDPYVQVSFAGL 122
            P GV L   H  F ++++RA+ LP+M+ +++ NVK+ F  ++  K+LVDP+V+VSFAG 
Sbjct: 372 RPTGVALRGAH--FCLKLFRAEDLPQMDDAVMDNVKQIFGFDSNKKNLVDPFVEVSFAGK 429

Query: 123 TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPV-NNTVIGTHYIDLKNISN 181
              + + + + NP WN+ I    MFP +C +++I++ D D + +N  + T Y+ +  IS 
Sbjct: 430 MLCSKILEKTANPQWNQNITLPAMFPSMCEKMRIRVMDWDRLTHNDTVATTYLGMSKISA 489

Query: 182 DG 183
            G
Sbjct: 490 TG 491

Key calcium ion sensor involved in the Ca(2+)-triggered synaptic vesicle-plasma membrane fusion. Plays a role in the sarcolemma repair mechanism of both skeletal muscle and cardiomyocytes that permits rapid resealing of membranes disrupted by mechanical stress.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
270003272	2081	hypothetical protein TcasGA2_TC002482 [T	0.931	0.085	0.876	8e-90
91079903	2035	PREDICTED: similar to otoferlin [Triboli	0.931	0.087	0.876	1e-89
380017113	2060	PREDICTED: LOW QUALITY PROTEIN: otoferli	0.931	0.086	0.859	4e-89
383855487	2062	PREDICTED: otoferlin-like [Megachile rot	0.931	0.086	0.859	6e-89
307168069	1996	Otoferlin [Camponotus floridanus]	0.931	0.089	0.853	9e-89
328791519	2060	PREDICTED: otoferlin-like [Apis mellifer	0.931	0.086	0.853	1e-88
242020062	2007	conserved hypothetical protein [Pediculu	0.931	0.088	0.842	2e-88
340729191	2060	PREDICTED: LOW QUALITY PROTEIN: otoferli	0.931	0.086	0.853	2e-88
350416842	2060	PREDICTED: otoferlin-like [Bombus impati	0.931	0.086	0.853	2e-88
307204819	2061	Otoferlin [Harpegnathos saltator]	0.931	0.086	0.842	3e-88

>gi|270003272|gb|EEZ99719.1| hypothetical protein TcasGA2_TC002482 [Tribolium castaneum]

 Score =  335 bits (858), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 156/178 (87%), Positives = 169/178 (94%)

Query: 9   DHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQKSEKDEDDIEANLLLPEG 68
           DHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVK+P KSEKDEDDIEANLLLP+G
Sbjct: 409 DHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKVPPKSEKDEDDIEANLLLPDG 468

Query: 69  VPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSV 128
           VP++RQ ARFI++IYRADGLPKMNSSL+ANVKKAFTGE  DLVDPYVQVSFAGLTGKTSV
Sbjct: 469 VPIDRQRARFIVKIYRADGLPKMNSSLMANVKKAFTGELSDLVDPYVQVSFAGLTGKTSV 528

Query: 129 KKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGDKG 186
           KK+SY PVWNEQ++F+EMFPPLC RIKIQLRDNDPV  TVIGTH+IDLK ISNDG+KG
Sbjct: 529 KKHSYAPVWNEQLVFTEMFPPLCQRIKIQLRDNDPVKPTVIGTHFIDLKTISNDGEKG 586

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91079903|ref|XP_968595.1| PREDICTED: similar to otoferlin [Tribolium castaneum]

 Score =  334 bits (857), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 156/178 (87%), Positives = 169/178 (94%)

Query: 9   DHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQKSEKDEDDIEANLLLPEG 68
           DHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVK+P KSEKDEDDIEANLLLP+G
Sbjct: 381 DHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKVPPKSEKDEDDIEANLLLPDG 440

Query: 69  VPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSV 128
           VP++RQ ARFI++IYRADGLPKMNSSL+ANVKKAFTGE  DLVDPYVQVSFAGLTGKTSV
Sbjct: 441 VPIDRQRARFIVKIYRADGLPKMNSSLMANVKKAFTGELSDLVDPYVQVSFAGLTGKTSV 500

Query: 129 KKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGDKG 186
           KK+SY PVWNEQ++F+EMFPPLC RIKIQLRDNDPV  TVIGTH+IDLK ISNDG+KG
Sbjct: 501 KKHSYAPVWNEQLVFTEMFPPLCQRIKIQLRDNDPVKPTVIGTHFIDLKTISNDGEKG 558

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380017113|ref|XP_003692508.1| PREDICTED: LOW QUALITY PROTEIN: otoferlin-like [Apis florea]

 Score =  332 bits (851), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 153/178 (85%), Positives = 169/178 (94%)

Query: 9   DHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQKSEKDEDDIEANLLLPEG 68
           DHQFYHKWALLTDPDD+AGGPKGYLKCDISVIGKGDTVKIP KSEKDEDDIE NLLLP+G
Sbjct: 398 DHQFYHKWALLTDPDDVAGGPKGYLKCDISVIGKGDTVKIPPKSEKDEDDIEGNLLLPDG 457

Query: 69  VPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSV 128
           VP+ERQ ARF++++YRADGLPKMNSS++ANVKKAFTGE KDLVDPYVQVSFAGLTGKTSV
Sbjct: 458 VPIERQRARFVVKVYRADGLPKMNSSIMANVKKAFTGEVKDLVDPYVQVSFAGLTGKTSV 517

Query: 129 KKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGDKG 186
           K++SY PVWNEQIIF+EMFPPLC RIKIQL DNDPV+ TVIGTH++DLK ISNDG+KG
Sbjct: 518 KRHSYAPVWNEQIIFTEMFPPLCQRIKIQLCDNDPVHATVIGTHFVDLKQISNDGEKG 575

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855487|ref|XP_003703242.1| PREDICTED: otoferlin-like [Megachile rotundata]

 Score =  332 bits (850), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 153/178 (85%), Positives = 169/178 (94%)

Query: 9   DHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQKSEKDEDDIEANLLLPEG 68
           DHQFYHKWALLTDPDD+AGGPKGYLKCDISVIGKGDTVKIP KSEKDEDDIE NLLLP+G
Sbjct: 401 DHQFYHKWALLTDPDDVAGGPKGYLKCDISVIGKGDTVKIPPKSEKDEDDIEGNLLLPDG 460

Query: 69  VPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSV 128
           VP+ERQ A+FI+++YRADGLPKMNSS++ANVKKAFTGE KDLVDPYVQVSFAGLTGKTSV
Sbjct: 461 VPIERQRAKFIVKVYRADGLPKMNSSIMANVKKAFTGEVKDLVDPYVQVSFAGLTGKTSV 520

Query: 129 KKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGDKG 186
           K++SY PVWNEQI+FSEMFPPLC RIKIQL DNDPV+ TVIGTH++DLK ISNDG+KG
Sbjct: 521 KRHSYAPVWNEQIVFSEMFPPLCQRIKIQLCDNDPVHATVIGTHFVDLKQISNDGEKG 578

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307168069|gb|EFN61375.1| Otoferlin [Camponotus floridanus]

 Score =  331 bits (848), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 152/178 (85%), Positives = 168/178 (94%)

Query: 9   DHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQKSEKDEDDIEANLLLPEG 68
           DHQFYHKWALLTDPDDI GGPKGYLKCDISVIGKGDTVKIP KSEKDEDDIE NLLLP+G
Sbjct: 393 DHQFYHKWALLTDPDDITGGPKGYLKCDISVIGKGDTVKIPPKSEKDEDDIEGNLLLPDG 452

Query: 69  VPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSV 128
           VP+ERQ ARFI+++YRADGLPKMNSS++ANVKKAFTGE KDLVDPYVQVSFAGL+GKTSV
Sbjct: 453 VPIERQRARFIVKVYRADGLPKMNSSIMANVKKAFTGEVKDLVDPYVQVSFAGLSGKTSV 512

Query: 129 KKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGDKG 186
           K+NSY P+WNEQI+F+EMFPPLC RIKIQL DNDPV+ TVIGTH++DLK ISNDG+KG
Sbjct: 513 KRNSYAPIWNEQIVFTEMFPPLCQRIKIQLCDNDPVHATVIGTHFVDLKQISNDGEKG 570

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328791519|ref|XP_003251587.1| PREDICTED: otoferlin-like [Apis mellifera]

 Score =  330 bits (847), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 152/178 (85%), Positives = 169/178 (94%)

Query: 9   DHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQKSEKDEDDIEANLLLPEG 68
           DHQFYHKWALLTDPDD+AGGPKGYLKCDISVIGKGDTVKIP KSEKDEDDIE NLLLP+G
Sbjct: 398 DHQFYHKWALLTDPDDVAGGPKGYLKCDISVIGKGDTVKIPPKSEKDEDDIEGNLLLPDG 457

Query: 69  VPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSV 128
           VP+ERQ A+FI+++YRADGLPKMNSS++ANVKKAFTGE KDLVDPYVQVSFAGLTGKTSV
Sbjct: 458 VPIERQRAKFIVKVYRADGLPKMNSSIMANVKKAFTGEVKDLVDPYVQVSFAGLTGKTSV 517

Query: 129 KKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGDKG 186
           K++SY PVWNEQI+F+EMFPPLC RIKIQL DNDPV+ TVIGTH++DLK ISNDG+KG
Sbjct: 518 KRHSYAPVWNEQIVFTEMFPPLCQRIKIQLCDNDPVHATVIGTHFVDLKQISNDGEKG 575

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242020062|ref|XP_002430476.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212515622|gb|EEB17738.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  330 bits (846), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 150/178 (84%), Positives = 169/178 (94%)

Query: 9   DHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQKSEKDEDDIEANLLLPEG 68
           DHQFYHKWALLTDPDD+  GPKGYLKCD+SV+GKGD+VKIP KSEKDEDDIEANLL+P G
Sbjct: 357 DHQFYHKWALLTDPDDMIAGPKGYLKCDMSVMGKGDSVKIPPKSEKDEDDIEANLLVPAG 416

Query: 69  VPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSV 128
           +P+ERQ A+FI +IYRADGLPKMNSS+VANVKKAFTGE +DLVDPYVQ+SFAGLTGKTSV
Sbjct: 417 IPVERQRAKFIFKIYRADGLPKMNSSIVANVKKAFTGEVRDLVDPYVQISFAGLTGKTSV 476

Query: 129 KKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGDKG 186
           KK+SY+PVWNEQI+F+EMFPPLC RIKIQLRDNDPVNNT+IGTH+IDLK ISNDG+KG
Sbjct: 477 KKHSYSPVWNEQIVFNEMFPPLCQRIKIQLRDNDPVNNTIIGTHFIDLKTISNDGEKG 534

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729191|ref|XP_003402890.1| PREDICTED: LOW QUALITY PROTEIN: otoferlin-like [Bombus terrestris]

 Score =  330 bits (846), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 152/178 (85%), Positives = 169/178 (94%)

Query: 9   DHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQKSEKDEDDIEANLLLPEG 68
           DHQFYHKWALLTDPDD+AGGPKGYLKCDISVIGKGDTVKIP KSEKDEDDIE NLLLP+G
Sbjct: 398 DHQFYHKWALLTDPDDVAGGPKGYLKCDISVIGKGDTVKIPPKSEKDEDDIEGNLLLPDG 457

Query: 69  VPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSV 128
           VP+ERQ A+FI+++YRADGLPKMNSS++ANVKKAFTGE KDLVDPYVQVSFAGLTGKTSV
Sbjct: 458 VPIERQRAKFIVKVYRADGLPKMNSSIMANVKKAFTGEIKDLVDPYVQVSFAGLTGKTSV 517

Query: 129 KKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGDKG 186
           K++SY PVWNEQI+F+EMFPPLC RIKIQL DNDPV+ TVIGTH++DLK ISNDG+KG
Sbjct: 518 KRHSYAPVWNEQIVFTEMFPPLCQRIKIQLCDNDPVHATVIGTHFVDLKKISNDGEKG 575

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350416842|ref|XP_003491130.1| PREDICTED: otoferlin-like [Bombus impatiens]

 Score =  330 bits (846), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 152/178 (85%), Positives = 169/178 (94%)

Query: 9   DHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQKSEKDEDDIEANLLLPEG 68
           DHQFYHKWALLTDPDD+AGGPKGYLKCDISVIGKGDTVKIP KSEKDEDDIE NLLLP+G
Sbjct: 398 DHQFYHKWALLTDPDDVAGGPKGYLKCDISVIGKGDTVKIPPKSEKDEDDIEGNLLLPDG 457

Query: 69  VPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSV 128
           VP+ERQ A+FI+++YRADGLPKMNSS++ANVKKAFTGE KDLVDPYVQVSFAGLTGKTSV
Sbjct: 458 VPIERQRAKFIVKVYRADGLPKMNSSIMANVKKAFTGEIKDLVDPYVQVSFAGLTGKTSV 517

Query: 129 KKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGDKG 186
           K++SY PVWNEQI+F+EMFPPLC RIKIQL DNDPV+ TVIGTH++DLK ISNDG+KG
Sbjct: 518 KRHSYAPVWNEQIVFTEMFPPLCQRIKIQLCDNDPVHATVIGTHFVDLKKISNDGEKG 575

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307204819|gb|EFN83377.1| Otoferlin [Harpegnathos saltator]

 Score =  329 bits (843), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 150/178 (84%), Positives = 168/178 (94%)

Query: 9   DHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQKSEKDEDDIEANLLLPEG 68
           DHQFYHKWALLTDPDD+ GGPKGYLKCDISVIGKGDTVKIP KSEKDEDDIE NLLLP+G
Sbjct: 396 DHQFYHKWALLTDPDDVTGGPKGYLKCDISVIGKGDTVKIPPKSEKDEDDIEGNLLLPDG 455

Query: 69  VPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSV 128
           VP+ERQ ARF++++YRADGLPKMNSS++ANVKKAFTGE KDLVDPYVQVSFAGL+GKTSV
Sbjct: 456 VPIERQRARFVVKVYRADGLPKMNSSIMANVKKAFTGEVKDLVDPYVQVSFAGLSGKTSV 515

Query: 129 KKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGDKG 186
           K++SY PVWNEQI+F+EMFPPLC RIKIQL DNDPV+ TVIGTH++DLK ISNDG+KG
Sbjct: 516 KRHSYAPVWNEQIVFTEMFPPLCQRIKIQLCDNDPVHATVIGTHFVDLKQISNDGEKG 573

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
UNIPROTKB|E1BMQ1	1998	OTOF "Uncharacterized protein"	0.931	0.089	0.703	7e-70
UNIPROTKB|J9P9C0	1915	OTOF "Uncharacterized protein"	0.931	0.092	0.709	8.2e-70
UNIPROTKB|E2RDS5	1997	OTOF "Uncharacterized protein"	0.931	0.089	0.709	8.9e-70
ZFIN|ZDB-GENE-030131-7778	1992	otof "otoferlin" [Danio rerio	0.931	0.089	0.709	1.1e-69
RGD|620646	1993	Otof "otoferlin" [Rattus norve	0.931	0.089	0.698	2.4e-69
UNIPROTKB|Q9HC10	1997	OTOF "Otoferlin" [Homo sapiens	0.931	0.089	0.698	2.4e-69
MGI|MGI:1891247	1997	Otof "otoferlin" [Mus musculus	0.931	0.089	0.698	2.4e-69
UNIPROTKB|E1BS70	2010	OTOF "Uncharacterized protein"	0.931	0.088	0.715	3.1e-69
ZFIN|ZDB-GENE-110406-5	1801	si:ch73-50f9.1 "si:ch73-50f9.1	0.931	0.098	0.698	2.2e-68
RGD|1564703	1730	Fer1l6 "fer-1-like 6 (C. elega	0.926	0.102	0.648	1.9e-59

UNIPROTKB|E1BMQ1 OTOF "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 722 (259.2 bits), Expect = 7.0e-70, P = 7.0e-70
 Identities = 126/179 (70%), Positives = 158/179 (88%)

Query:     9 DHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQKS-EKDEDDIEANLLLPE 67
             +HQF+HKWA+L+DPDDI+ G KGY+KCD++V+GKGD +K P K+ E DEDDIE NLLLPE
Sbjct:   349 EHQFHHKWAVLSDPDDISAGLKGYVKCDVAVVGKGDNIKTPHKANETDEDDIEGNLLLPE 408

Query:    68 GVPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTS 127
             GVP ERQ ARF ++IYRA+GLP+MN+SL+ANVKKAFTGE KDLVDPYVQV FAG  GKTS
Sbjct:   409 GVPPERQWARFYVKIYRAEGLPRMNTSLMANVKKAFTGENKDLVDPYVQVFFAGQKGKTS 468

Query:   128 VKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGDKG 186
             V+K+SY P+WNEQ++F+++FPPLC R+K+Q+RD+D VN+  IGTH+IDL+ ISNDGDKG
Sbjct:   469 VQKSSYEPLWNEQVVFTDLFPPLCKRMKVQIRDSDKVNDVAIGTHFIDLRKISNDGDKG 527

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|J9P9C0 OTOF "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 721 (258.9 bits), Expect = 8.2e-70, P = 8.2e-70
 Identities = 127/179 (70%), Positives = 157/179 (87%)

Query:     9 DHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQKS-EKDEDDIEANLLLPE 67
             +HQF+HKWA+L+DPDDI+ G KGY+KCDI+V+GKGD +K P K+ E DEDDIE NLLLPE
Sbjct:   267 EHQFHHKWAILSDPDDISAGLKGYVKCDIAVVGKGDNIKTPHKANETDEDDIEGNLLLPE 326

Query:    68 GVPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTS 127
             GVP ERQ ARF ++IYRA+GLP+MN+SL+ANVKKAF GE KDLVDPYVQV FAG  GKTS
Sbjct:   327 GVPAERQWARFYVKIYRAEGLPRMNTSLMANVKKAFIGENKDLVDPYVQVFFAGQKGKTS 386

Query:   128 VKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGDKG 186
             V+K+SY P+WNEQ+IF+++FPPLC R+K+Q+RD+D VN+  IGTH+IDL+ ISNDGDKG
Sbjct:   387 VQKSSYEPLWNEQVIFTDLFPPLCKRMKVQIRDSDKVNDVAIGTHFIDLRKISNDGDKG 445

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2RDS5 OTOF "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 721 (258.9 bits), Expect = 8.9e-70, P = 8.9e-70
 Identities = 127/179 (70%), Positives = 157/179 (87%)

Query:     9 DHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQKS-EKDEDDIEANLLLPE 67
             +HQF+HKWA+L+DPDDI+ G KGY+KCDI+V+GKGD +K P K+ E DEDDIE NLLLPE
Sbjct:   349 EHQFHHKWAILSDPDDISAGLKGYVKCDIAVVGKGDNIKTPHKANETDEDDIEGNLLLPE 408

Query:    68 GVPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTS 127
             GVP ERQ ARF ++IYRA+GLP+MN+SL+ANVKKAF GE KDLVDPYVQV FAG  GKTS
Sbjct:   409 GVPAERQWARFYVKIYRAEGLPRMNTSLMANVKKAFIGENKDLVDPYVQVFFAGQKGKTS 468

Query:   128 VKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGDKG 186
             V+K+SY P+WNEQ+IF+++FPPLC R+K+Q+RD+D VN+  IGTH+IDL+ ISNDGDKG
Sbjct:   469 VQKSSYEPLWNEQVIFTDLFPPLCKRMKVQIRDSDKVNDVAIGTHFIDLRKISNDGDKG 527

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-030131-7778 otof "otoferlin" [Danio rerio (taxid:7955)]

 Score = 720 (258.5 bits), Expect = 1.1e-69, P = 1.1e-69
 Identities = 127/179 (70%), Positives = 155/179 (86%)

Query:     9 DHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQK-SEKDEDDIEANLLLPE 67
             +HQF+HKWA+L+DPDDI  G KGY+KCDI+V+GKGD +K P K SE DEDDIE NLLLPE
Sbjct:   354 EHQFHHKWAMLSDPDDITTGCKGYVKCDIAVVGKGDNIKTPHKASEADEDDIEGNLLLPE 413

Query:    68 GVPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTS 127
             GVP ERQ ARF ++IYRA+GLPKMN+S++ANVKKAF GE +DLVDPYV V FAG  GKTS
Sbjct:   414 GVPSERQWARFYVKIYRAEGLPKMNTSIMANVKKAFIGENRDLVDPYVLVQFAGQKGKTS 473

Query:   128 VKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGDKG 186
             V+K+SY P+WNEQ+IF+EMFPPLC R+K+Q+RD+D VN+  IGTH+IDL+ +SNDGDKG
Sbjct:   474 VQKSSYEPIWNEQVIFTEMFPPLCRRLKVQIRDSDKVNDVAIGTHFIDLRKVSNDGDKG 532

GO:0016021 "integral to membrane" evidence=IEA

GO:0016079 "synaptic vesicle exocytosis" evidence=ISS

GO:0005509 "calcium ion binding" evidence=ISS

GO:0030672 "synaptic vesicle membrane" evidence=ISS

GO:0030054 "cell junction" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

RGD|620646 Otof "otoferlin" [Rattus norvegicus (taxid:10116)]

 Score = 717 (257.5 bits), Expect = 2.4e-69, P = 2.4e-69
 Identities = 125/179 (69%), Positives = 157/179 (87%)

Query:     9 DHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQKS-EKDEDDIEANLLLPE 67
             +HQF+HKWA+L+DPDDI+ G KGY+KCD++V+GKGD +K P K+ E DEDDIE NLLLPE
Sbjct:   364 EHQFHHKWAILSDPDDISAGLKGYVKCDVAVVGKGDNIKTPHKANETDEDDIEGNLLLPE 423

Query:    68 GVPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTS 127
             GVP ERQ ARF ++IYRA+GLP+MN+SL+ANVKKAF GE KDLVDPYVQV FAG  GKTS
Sbjct:   424 GVPPERQWARFYVKIYRAEGLPRMNTSLMANVKKAFIGENKDLVDPYVQVFFAGQKGKTS 483

Query:   128 VKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGDKG 186
             V+K+SY P+WNEQ++F+++FPPLC R+K+Q+RD+D VN+  IGTH+IDL+ ISNDGDKG
Sbjct:   484 VQKSSYEPLWNEQVVFTDLFPPLCKRMKVQIRDSDKVNDVAIGTHFIDLRKISNDGDKG 542

GO:0003674 "molecular_function" evidence=ND

GO:0005509 "calcium ion binding" evidence=ISO;ISS

GO:0005575 "cellular_component" evidence=ND

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0016079 "synaptic vesicle exocytosis" evidence=ISO;ISS

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=ISO;ISS

UNIPROTKB|Q9HC10 OTOF "Otoferlin" [Homo sapiens (taxid:9606)]

 Score = 717 (257.5 bits), Expect = 2.4e-69, P = 2.4e-69
 Identities = 125/179 (69%), Positives = 157/179 (87%)

Query:     9 DHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQKS-EKDEDDIEANLLLPE 67
             +HQF+HKWA+L+DPDDI+ G KGY+KCD++V+GKGD +K P K+ E DEDDIE NLLLPE
Sbjct:   349 EHQFHHKWAILSDPDDISSGLKGYVKCDVAVVGKGDNIKTPHKANETDEDDIEGNLLLPE 408

Query:    68 GVPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTS 127
             GVP ERQ ARF ++IYRA+GLP+MN+SL+ANVKKAF GE KDLVDPYVQV FAG  GKTS
Sbjct:   409 GVPPERQWARFYVKIYRAEGLPRMNTSLMANVKKAFIGENKDLVDPYVQVFFAGQKGKTS 468

Query:   128 VKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGDKG 186
             V+K+SY P+WNEQ++F+++FPPLC R+K+Q+RD+D VN+  IGTH+IDL+ ISNDGDKG
Sbjct:   469 VQKSSYEPLWNEQVVFTDLFPPLCKRMKVQIRDSDKVNDVAIGTHFIDLRKISNDGDKG 527

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005509 "calcium ion binding" evidence=ISS

GO:0030672 "synaptic vesicle membrane" evidence=ISS

GO:0016079 "synaptic vesicle exocytosis" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

GO:0006944 "cellular membrane fusion" evidence=TAS

MGI|MGI:1891247 Otof "otoferlin" [Mus musculus (taxid:10090)]

 Score = 717 (257.5 bits), Expect = 2.4e-69, P = 2.4e-69
 Identities = 125/179 (69%), Positives = 157/179 (87%)

Query:     9 DHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQKS-EKDEDDIEANLLLPE 67
             +HQF+HKWA+L+DPDDI+ G KGY+KCD++V+GKGD +K P K+ E DEDDIE NLLLPE
Sbjct:   348 EHQFHHKWAILSDPDDISAGLKGYVKCDVAVVGKGDNIKTPHKANETDEDDIEGNLLLPE 407

Query:    68 GVPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTS 127
             GVP ERQ ARF ++IYRA+GLP+MN+SL+ANVKKAF GE KDLVDPYVQV FAG  GKTS
Sbjct:   408 GVPPERQWARFYVKIYRAEGLPRMNTSLMANVKKAFIGENKDLVDPYVQVFFAGQKGKTS 467

Query:   128 VKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGDKG 186
             V+K+SY P+WNEQ++F+++FPPLC R+K+Q+RD+D VN+  IGTH+IDL+ ISNDGDKG
Sbjct:   468 VQKSSYEPLWNEQVVFTDLFPPLCKRMKVQIRDSDKVNDVAIGTHFIDLRKISNDGDKG 526

GO:0005509 "calcium ion binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016079 "synaptic vesicle exocytosis" evidence=IDA;IMP

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IDA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0045202 "synapse" evidence=IEA

UNIPROTKB|E1BS70 OTOF "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 716 (257.1 bits), Expect = 3.1e-69, P = 3.1e-69
 Identities = 128/179 (71%), Positives = 156/179 (87%)

Query:     9 DHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQKS-EKDEDDIEANLLLPE 67
             +HQFYHKWA+L+DP+D+  G KGYLKCDI+V+GKGD +K P K+ E +EDDIE NLLLP+
Sbjct:   359 EHQFYHKWAILSDPEDLTAGLKGYLKCDIAVVGKGDNIKTPHKANETEEDDIEGNLLLPD 418

Query:    68 GVPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTS 127
             GVP ERQ ARF I+IYRA+GLP+MN+S++ANVKKA  GE KDLVDPYVQV+FAG  GKTS
Sbjct:   419 GVPPERQWARFYIKIYRAEGLPRMNTSIMANVKKALIGENKDLVDPYVQVAFAGQKGKTS 478

Query:   128 VKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGDKG 186
             V+K+SY P+WNEQIIF+EMFPPLC RIKIQ+RD+D VN+  IGTH+IDL+ ISN+GDKG
Sbjct:   479 VQKSSYEPLWNEQIIFTEMFPPLCKRIKIQIRDSDKVNDVAIGTHFIDLRKISNEGDKG 537

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-110406-5 si:ch73-50f9.1 "si:ch73-50f9.1" [Danio rerio (taxid:7955)]

 Score = 707 (253.9 bits), Expect = 2.2e-68, P = 2.2e-68
 Identities = 125/179 (69%), Positives = 153/179 (85%)

Query:     9 DHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQKS-EKDEDDIEANLLLPE 67
             DHQF+HKWA L DP+DI  G KGY+KCDI+V+ KGDT+K P K+ E DEDDIE+NLLLPE
Sbjct:   177 DHQFFHKWATLCDPEDITAGLKGYVKCDIAVVAKGDTIKTPHKANENDEDDIESNLLLPE 236

Query:    68 GVPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTS 127
              VP ERQ ARF ++IYRA+GLPKMN+S++ANVKKAF GE KDLVDPYVQV FAG  GKTS
Sbjct:   237 DVPAERQWARFYLKIYRAEGLPKMNTSIMANVKKAFIGENKDLVDPYVQVLFAGQKGKTS 296

Query:   128 VKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGDKG 186
             ++K+SY P+WNEQI+F+E FPPLC R+K+Q+RD+D VN+  IGTH+IDL+ I+NDGDKG
Sbjct:   297 IQKSSYEPIWNEQIVFTEQFPPLCRRMKLQIRDSDKVNDVAIGTHFIDLRKIANDGDKG 355

GO:0016021 "integral to membrane" evidence=IEA

RGD|1564703 Fer1l6 "fer-1-like 6 (C. elegans)" [Rattus norvegicus (taxid:10116)]

 Score = 623 (224.4 bits), Expect = 1.9e-59, P = 1.9e-59
 Identities = 116/179 (64%), Positives = 141/179 (78%)

Query:    10 HQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQKSEKDEDDIEANLLLPEGV 69
             HQF  KWALLTDP DI  G KGYLKCDISV GKGD +K   K+   E+ IE NLL+P+G 
Sbjct:    99 HQFCDKWALLTDPGDIRTGTKGYLKCDISVTGKGDILKTNPKTSDAEEQIEKNLLIPQGF 158

Query:    70 PLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVK 129
             P ER  ARF +R+YRA+GLPKMNSS++ANV KAF G++KDLVDP+V+VSFAG TG+TSV+
Sbjct:   159 PSERPWARFYVRLYRAEGLPKMNSSIMANVTKAFVGDSKDLVDPFVEVSFAGQTGRTSVQ 218

Query:   130 KNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISN--DGDKG 186
             KN  +PVW+EQ++F EMFPPLC R+KIQL D   +N+  + TH+IDLK ISN  DGDKG
Sbjct:   219 KNCADPVWHEQVVFKEMFPPLCRRVKIQLWDEGSMNDVTLATHFIDLKKISNEQDGDKG 277

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9HC10	OTOF_HUMAN	No assigned EC number	0.6983	0.9319	0.0891	yes	N/A
Q9ERC5	OTOF_RAT	No assigned EC number	0.6983	0.9319	0.0893	yes	N/A
Q9ESF1	OTOF_MOUSE	No assigned EC number	0.6983	0.9319	0.0891	yes	N/A
Q5SPC5	OTOF_DANRE	No assigned EC number	0.7094	0.9319	0.0893	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	191
cd04018	151	cd04018, C2C_Ferlin, C2 domain third repeat in Fer	5e-66
pfam08151	72	pfam08151, FerI, FerI (NUC094) domain	7e-27
cd00030	102	cd00030, C2, C2 domain	8e-16
smart00239	101	smart00239, C2, Protein kinase C conserved region	2e-15
pfam00168	85	pfam00168, C2, C2 domain	1e-13
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	2e-11
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	3e-09
cd04015	158	cd04015, C2_plant_PLD, C2 domain present in plant	3e-08
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	4e-08
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	3e-07
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	4e-07
cd04017	135	cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe	5e-07
cd08688	110	cd08688, C2_KIAA0528-like, C2 domain found in the	9e-07
cd04039	108	cd04039, C2_PSD, C2 domain present in Phosphatidyl	2e-06
cd04011	111	cd04011, C2B_Ferlin, C2 domain second repeat in Fe	5e-06
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	5e-06
cd08373	127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	6e-06
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	9e-06
cd04014	132	cd04014, C2_PKC_epsilon, C2 domain in Protein Kina	1e-05
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	2e-05
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	3e-05
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	9e-05
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	1e-04
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	2e-04
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	2e-04
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	3e-04
cd04021	125	cd04021, C2_E3_ubiquitin_ligase, C2 domain present	3e-04
PLN03008	868	PLN03008, PLN03008, Phospholipase D delta	3e-04
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	3e-04
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	5e-04
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	7e-04
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	8e-04
cd04011	111	cd04011, C2B_Ferlin, C2 domain second repeat in Fe	0.001
cd04045	120	cd04045, C2C_Tricalbin-like, C2 domain third repea	0.001
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	0.001
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	0.001
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	0.001
cd08406	136	cd08406, C2B_Synaptotagmin-12, C2 domain second re	0.001
cd04032	127	cd04032, C2_Perforin, C2 domain of Perforin	0.002
cd08678	126	cd08678, C2_C21orf25-like, C2 domain found in the	0.002
cd08378	121	cd08378, C2B_MCTP_PRT_plant, C2 domain second repe	0.003
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	0.004
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	0.004
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	0.004
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	0.004

>gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin

 Score =  199 bits (507), Expect = 5e-66
 Identities = 80/111 (72%), Positives = 93/111 (83%), Gaps = 1/111 (0%)

Query: 77  RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPV 136
           RFI +IYRA+ LP+M+S ++ANVKKAF GE K+LVDPYV+VSFAG   KTSVKKNSYNP 
Sbjct: 1   RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPE 60

Query: 137 WNEQIIFSEMFPPLCSRIKIQLRDNDPV-NNTVIGTHYIDLKNISNDGDKG 186
           WNEQI+F EMFPPLC RIKIQ+RD D V N+ VIGTH+IDL  ISN GD+G
Sbjct: 61  WNEQIVFPEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEG 111

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151

>gnl|CDD|149289 pfam08151, FerI, FerI (NUC094) domain

 Score = 97.0 bits (242), Expect = 7e-27
 Identities = 41/66 (62%), Positives = 47/66 (71%), Gaps = 1/66 (1%)

Query: 5  LREGDHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQKS-EKDEDDIEANL 63
            + DH F  KWALLTDPDD + G KGYLK D+SV+GKGD   +  KS + DEDDIE NL
Sbjct: 7  YDQPDHAFLRKWALLTDPDDTSAGVKGYLKVDLSVLGKGDEPPLEPKSVDGDEDDIEKNL 66

Query: 64 LLPEGV 69
          LLP GV
Sbjct: 67 LLPAGV 72

This domain is present in proteins of the Ferlin family. It is often located between two C2 domains. Length = 72

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 69.4 bits (170), Expect = 8e-16
 Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 17/112 (15%)

Query: 78  FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-TGKTSVKKNSYNPV 136
             + +  A  LP  + +                 DPYV+VS  G    KT V KN+ NPV
Sbjct: 1   LRVTVIEARNLPAKDLN--------------GKSDPYVKVSLGGKQKFKTKVVKNTLNPV 46

Query: 137 WNEQIIFSEMFPPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKGK 187
           WNE   F  +  P    + +++ D D  + +  +G   I L  + + G +G+
Sbjct: 47  WNETFEF-PVLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGE 97

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 68.3 bits (167), Expect = 2e-15
 Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 19/107 (17%)

Query: 77  RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL---TGKTSVKKNSY 133
              ++I  A  LP  +                   DPYV+VS  G      KT V KN+ 
Sbjct: 1   TLTVKIISARNLPPKDKG--------------GKSDPYVKVSLDGDPKEKKKTKVVKNTL 46

Query: 134 NPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNI 179
           NPVWNE   F E+ PP  + ++I++ D D    +  IG   I L ++
Sbjct: 47  NPVWNETFEF-EVPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDL 92

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 63.1 bits (154), Expect = 1e-13
 Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 19/96 (19%)

Query: 80  IRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTG---KTSVKKNSYNPV 136
           + +  A  LP  +                   DPYV+VS  G      KT V KN+ NPV
Sbjct: 3   VTVISAKNLPPKDL--------------NGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPV 48

Query: 137 WNEQIIFSEMFPPLCSRIKIQLRDNDPV-NNTVIGT 171
           WNE   F    P L + ++I++ D D    +  IG 
Sbjct: 49  WNETFTFEVTLPEL-AELRIEVYDYDRFGKDDFIGE 83

Length = 85

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 58.3 bits (142), Expect = 2e-11
 Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 20/110 (18%)

Query: 77  RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL------TGKTS-VK 129
              I+I     LPK              G+   +VDPYV+V   GL        KT  VK
Sbjct: 3   TLTIKIISGQQLPK------------PKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVK 50

Query: 130 KNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNI 179
            N +NPVWNE   F    P L   ++  + D D  ++  +G   + L ++
Sbjct: 51  NNGFNPVWNETFEFDVTVPELAF-LRFVVYDEDSGDDDFLGQACLPLDSL 99

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 55.5 bits (134), Expect = 3e-09
 Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 22/102 (21%)

Query: 80  IRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLT-GKTSVKKNSYNPVWN 138
           ++I  A+GL K +S++               VDPY+ V+F+    GKT VKKN+ NPVWN
Sbjct: 440 VKIKSAEGLKKSDSTI------------NGTVDPYITVTFSDRVIGKTRVKKNTLNPVWN 487

Query: 139 EQI---IFSEMFPPLCSRIKIQLRD-NDPVNNTVIGTHYIDL 176
           E     + S         + + L D N   ++ V+G+  +DL
Sbjct: 488 ETFYILLNS-----FTDPLNLSLYDFNSFKSDKVVGSTQLDL 524

Length = 1227

>gnl|CDD|175982 cd04015, C2_plant_PLD, C2 domain present in plant phospholipase D (PLD)

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 25/115 (21%)

Query: 80  IRIYRADGLPKMN--SSLVANVKKAFTGETKDLV--------------DPYVQVSFAGLT 123
           + IY AD LP M+  S  +        G ++  +              DPY  V  AG  
Sbjct: 11  VTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGAR 70

Query: 124 -GKTSVKKNSYNPVWNEQIIFSEMFPPLC---SRIKIQLRDNDPVNNTVIGTHYI 174
             +T V +NS NPVWNE   F           S ++  ++DND V   +IG  YI
Sbjct: 71  VARTRVIENSENPVWNES--FH---IYCAHYASHVEFTVKDNDVVGAQLIGRAYI 120

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 158

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 49.5 bits (119), Expect = 4e-08
 Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 22/102 (21%)

Query: 80  IRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL--TGKTSVKKNSYNPVW 137
           + I  A GL K +  +         G T   VDPYV  S +      +T VKK++ NPVW
Sbjct: 6   VTIKSARGL-KGSDII---------GGT---VDPYVTFSISNRRELARTKVKKDTSNPVW 52

Query: 138 NEQ--IIFSEMFPPLCSRIKIQLRD-NDPVNNTVIGTHYIDL 176
           NE   I+ + +  PL     + + D ND   + +IGT   DL
Sbjct: 53  NETKYILVNSLTEPL----NLTVYDFNDKRKDKLIGTAEFDL 90

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 6/53 (11%)

Query: 112 DPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFS--EMFPPLCSRIKIQLRDND 162
           DPYV ++      KT V K + NPVWNE++  S      P    +K+++ D D
Sbjct: 23  DPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAP----LKLEVFDKD 71

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 46.5 bits (111), Expect = 4e-07
 Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 5/85 (5%)

Query: 101 KAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCS--RIKIQL 158
           K   G  K   DPYV V     T K+ V K + NP WNE  ++ E          ++I+L
Sbjct: 18  KFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNE--VY-EAVVDEVPGQELEIEL 74

Query: 159 RDNDPVNNTVIGTHYIDLKNISNDG 183
            D DP  +  +G   IDL ++   G
Sbjct: 75  FDEDPDKDDFLGRLSIDLGSVEKKG 99

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin

 Score = 46.8 bits (112), Expect = 5e-07
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 14/65 (21%)

Query: 112 DPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMF-----------PPLCSRIKIQLRD 160
           DP+ +VSF   + +T V K + +P W++ +IF E+            PPL   + ++L D
Sbjct: 23  DPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPL---VVVELFD 79

Query: 161 NDPVN 165
            D V 
Sbjct: 80  QDSVG 84

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135

>gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone

 Score = 45.4 bits (108), Expect = 9e-07
 Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 30/108 (27%)

Query: 80  IRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWN- 138
           +R+  A  LP M+              + DL D +V+V F   T KT V K S NPVWN 
Sbjct: 3   VRVVAARDLPVMD-------------RSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNS 49

Query: 139 --------EQIIFSEMFPPLCSRIKIQLRDNDPVN-NTVIGTHYIDLK 177
                   ++ +  E   PL    +I++ D+D  + N  IG  YIDL 
Sbjct: 50  EWFRFEVDDEELQDE---PL----QIRVMDHDTYSANDAIGKVYIDLN 90

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110

>gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD)

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 15/38 (39%), Positives = 28/38 (73%), Gaps = 1/38 (2%)

Query: 111 VDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFP 148
           +DP+V +SF     +TS ++++ NPV+NE++ F E++P
Sbjct: 26  MDPFVIISFGRRVFRTSWRRHTLNPVFNERLAF-EVYP 62

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108

>gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin

 Score = 43.3 bits (103), Expect = 5e-06
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 14/82 (17%)

Query: 106 ETKDLV----DPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIF------SEMFPPLCSRIK 155
           E + LV    DP V+V   G    TSVKK +  P +NE   F       E+F  +   IK
Sbjct: 12  EARQLVGGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKI---IK 68

Query: 156 IQLRDND-PVNNTVIGTHYIDL 176
           I + D+    ++T+IG+  +D+
Sbjct: 69  ISVYDSRSLRSDTLIGSFKLDV 90

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 43.7 bits (104), Expect = 5e-06
 Identities = 30/102 (29%), Positives = 41/102 (40%), Gaps = 23/102 (22%)

Query: 77  RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTG-----KTSVKKN 131
           R  + + +A  LP  +   ++              DPYV+VS           KTSVKK 
Sbjct: 15  RLTVVVLKARNLPPSDGKGLS--------------DPYVKVSLLQGGKKLKKKKTSVKKG 60

Query: 132 SYNPVWNEQIIF--SEMFPPLCSRIKIQLRDND-PVNNTVIG 170
           + NPV+NE   F          S + I + D D    N VIG
Sbjct: 61  TLNPVFNEAFSFDVPAEQLEEVS-LVITVVDKDSVGRNEVIG 101

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin

 Score = 43.4 bits (103), Expect = 6e-06
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 12/79 (15%)

Query: 112 DPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSR------IKIQLRD-NDPV 164
           D   +V+F G+  KT V +N  NPVWNE   +     PL         ++I ++D     
Sbjct: 16  DRIAKVTFRGVKKKTRVLENELNPVWNETFEW-----PLAGSPDPDESLEIVVKDYEKVG 70

Query: 165 NNTVIGTHYIDLKNISNDG 183
            N +IG+  + L+++ ++G
Sbjct: 71  RNRLIGSATVSLQDLVSEG 89

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 43.2 bits (102), Expect = 9e-06
 Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 33/118 (27%)

Query: 84  RADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTG-------KTSVKKNSYNPV 136
           +A  LPKM+ S +A              DPYV+V+     G       KT VKK + NPV
Sbjct: 23  KARHLPKMDVSGLA--------------DPYVKVNL--YYGKKRISKKKTHVKKCTLNPV 66

Query: 137 WNEQIIFSEMFPPLCSR-----IKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKGKD 188
           +NE  +F    P          ++  + D+D V  N VIG   +  K   + G   K+
Sbjct: 67  FNESFVFD--IP--SEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKASGSGGHHWKE 120

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175981 cd04014, C2_PKC_epsilon, C2 domain in Protein Kinase C (PKC) epsilon

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 80  IRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF-AGLTGKTSVKKNSYNPVWN 138
           I+I  A  L   + S     + A   +   L+DPYV +       GKTS K  + +PVWN
Sbjct: 8   IKICEAVDLKPTDWST----RHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWN 63

Query: 139 EQII 142
           E+  
Sbjct: 64  EEFT 67

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 132

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 23/116 (19%)

Query: 78  FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGK----TSVKKNSY 133
            ++ I+RA  LPK +         +         DPYV  SFA   GK    T + +   
Sbjct: 3   LVVTIHRATDLPKAD----FGTGSS---------DPYVTASFAKF-GKPLYSTRIIRKDL 48

Query: 134 NPVWNEQIIFSEMFPPLCS---RIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDK 185
           NPVW E      + P       R+  +L D+D    +  +G   IDLK +  D + 
Sbjct: 49  NPVWEETWFVL-VTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELIEDRNW 103

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 25/111 (22%)

Query: 81  RIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTG-------KTSVKKNSY 133
            I RA GL  M+++               L DPYV+++   L G       +T     + 
Sbjct: 20  TIIRAKGLKAMDAN--------------GLSDPYVKLNL--LPGASKATKLRTKTVHKTR 63

Query: 134 NPVWNEQIIFSEMFPPLCSR--IKIQLRDNDPVNNTVIGTHYIDLKNISND 182
           NP +NE + +  +      R  +++ + D D   N  +G   I LK +  +
Sbjct: 64  NPEFNETLTYYGITEEDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPN 114

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 40.2 bits (94), Expect = 9e-05
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 112 DPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVN-NTVIG 170
           DP+V+V + G T +TSV K S  P WNE   F  M     S + +++ D D V+ N  +G
Sbjct: 22  DPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELM-EGADSPLSVEVWDWDLVSKNDFLG 80

Query: 171 THYIDLK 177
                ++
Sbjct: 81  KVVFSIQ 87

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 8/57 (14%)

Query: 95  LVANVKKAFTGETKDLV---DPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIF 143
           L   + KA   +  D+    DPYV+VS           KTSVKKN+ NP +NE ++F
Sbjct: 16  LTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVF 72

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 8/78 (10%)

Query: 112 DPYVQVSFAGL----TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNT 167
           DP+ +V+        T +T VKK + NP ++E   F         +   ++ + D   + 
Sbjct: 20  DPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79

Query: 168 VIGTHYIDLKNISNDGDK 185
           +     ++L + S     
Sbjct: 80  LR----VELWHASMVSGD 93

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 20/113 (17%)

Query: 81  RIYRADGLPKMNSSLVANVKKAFTGETKDL---VDPYVQVSFAGLTGK-----TSVKKNS 132
           RI  +       S+L   + KA     KD     DP+V++    L  K     T VK+ +
Sbjct: 4   RIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYL--LPDKKHKLETKVKRKN 61

Query: 133 YNPVWNEQIIFSEMFP--PLCSRI-KIQLRD------NDPVNNTVIGTHYIDL 176
            NP WNE  +F E FP   L  R+  +Q+ D      NDP+    +  + +DL
Sbjct: 62  LNPHWNETFLF-EGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDL 113

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 4/83 (4%)

Query: 111 VDPYVQVSFAGLT-GKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNT-V 168
            DPY  V    L   +T    ++ NP+WN +I++  +      R+ ++  D +   +   
Sbjct: 732 SDPYATVLVNNLVKYRTIYGSSTLNPIWN-EILYVPVTSKN-QRLTLECMDYEESGDDRN 789

Query: 169 IGTHYIDLKNISNDGDKGKDYTY 191
           +G   I++ N+S   +       
Sbjct: 790 LGEVNINVSNVSKKDEDSALMET 812

Length = 1227

>gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 112 DPYVQVSFAGL-TGKTSVKKNSYNPVWNEQII 142
           DPYV+V+  G    KT V K + NP WNE   
Sbjct: 23  DPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFT 54

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|178585 PLN03008, PLN03008, Phospholipase D delta

 Score = 40.5 bits (94), Expect = 3e-04
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 3/71 (4%)

Query: 112 DPYVQVSFAGLT-GKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIG 170
           DPYV V     T  +T V KNS  P+W+E+   S   P   + ++ Q++D+D     +IG
Sbjct: 78  DPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHP--FAYLEFQVKDDDVFGAQIIG 135

Query: 171 THYIDLKNISN 181
           T  I +++I++
Sbjct: 136 TAKIPVRDIAS 146

Length = 868

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 11/57 (19%)

Query: 93  SSLVANVKK----AFTGETKDLVDPYVQV------SFAGLTGKTSVKKNSYNPVWNE 139
            SL  ++K+    A+  E K   +PYV+V      S      KTSVKKN+ NPV+NE
Sbjct: 14  GSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQS-KRKTSVKKNTTNPVFNE 69

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 38.0 bits (89), Expect = 5e-04
 Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 22/115 (19%)

Query: 72  ERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF---AGLTGK--T 126
           ++  ++ I+ + +A  LP  +                 L +PYV+V          K  T
Sbjct: 12  DKVTSQLIVTVLQARDLPPRDDG--------------SLRNPYVKVYLLPDRSEKSKRRT 57

Query: 127 SVKKNSYNPVWNEQIIFSEMFPP-LCSR-IKIQLRDNDPVN-NTVIGTHYIDLKN 178
              K + NP WN+   +S +    L  R +++ + D D    N  +G   IDL +
Sbjct: 58  KTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLAD 112

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 37.6 bits (88), Expect = 7e-04
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 19/76 (25%)

Query: 74  QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF-----AGLTGKTSV 128
           Q  + I+ +++   LP  +SS              D+ DPYV++            KTSV
Sbjct: 14  QRQKLIVTVHKCRNLPPCDSS--------------DIPDPYVRLYLLPDKSKSTRRKTSV 59

Query: 129 KKNSYNPVWNEQIIFS 144
           KK++ NPV++E   F 
Sbjct: 60  KKDNLNPVFDETFEFP 75

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 37.2 bits (87), Expect = 8e-04
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 11/74 (14%)

Query: 112 DPYVQVSFAGLTG----KTSVKKNSYNPVWNEQIIFSEMFPPLC-SRIKIQLRDNDPVN- 165
           DP+V+     L G    KT   K + NPVWNE   F    P    + +K+++ D D    
Sbjct: 21  DPFVKFY---LNGEKVFKTKTIKKTLNPVWNES--FEVPVPSRVRAVLKVEVYDWDRGGK 75

Query: 166 NTVIGTHYIDLKNI 179
           + ++G+ YIDL ++
Sbjct: 76  DDLLGSAYIDLSDL 89

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 10/14 (71%), Positives = 10/14 (71%)

Query: 9   DHQFYHKWALLTDP 22
           DH F  KW LLTDP
Sbjct: 98  DHAFLRKWLLLTDP 111

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins

 Score = 37.2 bits (87), Expect = 0.001
 Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 10/82 (12%)

Query: 111 VDPYVQVSFAG-LTGKTSVKKNSYNPVWNEQIIFSEMFPPLCS---RIKIQLRDNDPVNN 166
           +DPYV+V   G + G+T    N+ NPVW+E +     + P+ S   +I +++ D + V  
Sbjct: 22  IDPYVRVLVNGIVKGRTVTISNTLNPVWDEVL-----YVPVTSPNQKITLEVMDYEKVGK 76

Query: 167 T-VIGTHYIDLKNISNDGDKGK 187
              +G+  I++ ++    + GK
Sbjct: 77  DRSLGSVEINVSDLIKKNEDGK 98

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 111 VDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFS 144
              YV++ F G   +T  K    NPVWNE+++F+
Sbjct: 21  SSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFN 54

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 27/92 (29%), Positives = 35/92 (38%), Gaps = 12/92 (13%)

Query: 106 ETKDLV----------DPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIK 155
           E KDL           DPY  +S      KT    N+ NP WN    F  +F      +K
Sbjct: 9   EAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEF-PIFSAQNQLLK 67

Query: 156 IQLRDNDPVNN-TVIGTHYIDLKNISNDGDKG 186
           + L D D       +G   I L+ +  DG  G
Sbjct: 68  LILWDKDRFAGKDYLGEFDIALEEVFADGKTG 99

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 37.1 bits (87), Expect = 0.001
 Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 28/109 (25%)

Query: 79  IIRIY--RADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSV------KK 130
           ++R+Y  RA  L   + +                 DPY+++      GK  +        
Sbjct: 1   LVRVYVVRARNLQPKDPN--------------GKSDPYLKIKL----GKKKINDRDNYIP 42

Query: 131 NSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKN 178
           N+ NPV+ +        P   S +KI + D D +  + +IG   IDL++
Sbjct: 43  NTLNPVFGKMFELEATLP-GNSILKISVMDYDLLGSDDLIGETVIDLED 90

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|176051 cd08406, C2B_Synaptotagmin-12, C2 domain second repeat present in Synaptotagmin 12

 Score = 37.1 bits (86), Expect = 0.001
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 8/57 (14%)

Query: 108 KDLVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLR 159
           K   DP+V+V            KTSVK++  NP++NE +IFS   P +     + LR
Sbjct: 33  KTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFS--VPAI-VLQDLSLR 86

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 17/94 (18%)

Query: 70  PLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVK 129
           P  R  A   + + RA GL                G+     D YV+V F G   +T V 
Sbjct: 22  PTRRGLATLTVTVLRATGL---------------WGDYFTSTDGYVKVFFGGQEKRTEVI 66

Query: 130 KNSYNPVWNEQIIF-SEMFPPLCSRIKIQLRDND 162
            N+ NP WN    F S    P   +++ ++ D D
Sbjct: 67  WNNNNPRWNATFDFGSVELSPG-GKLRFEVWDRD 99

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127

>gnl|CDD|176060 cd08678, C2_C21orf25-like, C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 95  LVANVKKAFTGETKDLVDPY--VQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCS 152
           LV N+K     E     +PY  +++       ++S +KN+ NP W+E  +F     P   
Sbjct: 2   LVKNIKANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFE--LSPNSK 59

Query: 153 RIKIQLRDNDPV 164
            +  ++ DN   
Sbjct: 60  ELLFEVYDNGKK 71

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 19/100 (19%)

Query: 80  IRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNE 139
           +R+ +A GLP  ++                  DP V+V      G T   + + NP WN+
Sbjct: 4   VRVVKARGLPANSN------------------DPVVEVKLGNYKGSTKAIERTSNPEWNQ 45

Query: 140 QIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNI 179
              FS+      S +++ + D D   +  +G    DL  +
Sbjct: 46  VFAFSKDRLQ-GSTLEVSVWDKDKAKDDFLGGVCFDLSEV 84

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 112 DPYVQVSFAGLTGKTSVKKNS-YNPVWNEQIIFSEMFPPLCSRIKIQLR--DNDPVN-NT 167
           DPYV +       K+ V K    NP WNE+  F+  +P      K+ LR  D D  + + 
Sbjct: 23  DPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDD 82

Query: 168 VIGTHYIDLKNI 179
            IG   I LK +
Sbjct: 83  FIGEATIHLKGL 94

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 35.3 bits (82), Expect = 0.004
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 112 DPYVQVSFAGLTGKTSV-KKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIG 170
           DPY  +   G+T KT    +   +P W+E++ F E+       +K+ + D+D     +IG
Sbjct: 23  DPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRF-EITEDKKPILKVAVFDDDKRKPDLIG 81

Query: 171 THYIDLKNI 179
              +DL   
Sbjct: 82  DTEVDLSPA 90

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 35.5 bits (82), Expect = 0.004
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 12/63 (19%)

Query: 91  MNSSLVANVKKAFTGETKDL---VDPYVQVSFAGLTG-------KTSVKKNSYNPVWNEQ 140
             + +  N+ KA   +  D+    DPYV+V    +         KT +KK + NPV+NE 
Sbjct: 13  TANRITVNIIKARNLKAMDINGTSDPYVKVWL--MYKDKRVEKKKTVIKKRTLNPVFNES 70

Query: 141 IIF 143
            IF
Sbjct: 71  FIF 73

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 35.3 bits (82), Expect = 0.004
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 14/64 (21%)

Query: 80  IRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNE 139
           + ++ A+GL K +S   A              DPYV +   G + ++ V+K++ +P ++ 
Sbjct: 7   VHVHSAEGLSKQDSGGGA--------------DPYVIIKCEGESVRSPVQKDTLSPEFDT 52

Query: 140 QIIF 143
           Q IF
Sbjct: 53  QAIF 56

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	191
PF08151	72	FerI: FerI (NUC094) domain; InterPro: IPR012968 Th	99.94
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.93
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.84
KOG1030|consensus	168		99.83
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.82
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.82
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.82
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.82
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.82
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.81
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.81
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.8
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.8
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.8
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.79
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.79
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.79
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.79
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.78
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.78
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.78
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.78
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.78
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.78
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.78
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.77
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.77
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.77
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.76
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.76
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.76
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.76
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.76
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.76
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.76
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.76
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.75
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.75
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.75
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.75
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.75
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.74
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.74
KOG0696|consensus	683		99.74
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.74
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.74
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.74
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.74
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.73
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.73
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.73
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.73
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.73
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.72
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.72
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.72
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.72
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.72
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.71
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.71
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.71
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.71
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.71
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.71
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.71
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.71
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.7
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.69
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.69
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.69
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.69
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.68
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.68
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.68
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.68
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.67
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.67
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.66
PLN02223	537	phosphoinositide phospholipase C	99.66
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.66
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.66
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.65
PLN03008	868	Phospholipase D delta	99.64
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.62
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.62
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.62
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.62
PLN02230	598	phosphoinositide phospholipase C 4	99.6
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.6
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.6
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.6
KOG0169|consensus	746		99.6
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.59
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.58
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.57
PLN02952	599	phosphoinositide phospholipase C	99.57
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.56
PLN02222	581	phosphoinositide phospholipase C 2	99.55
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.54
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.51
KOG1028|consensus	421		99.48
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.47
PLN02228	567	Phosphoinositide phospholipase C	99.46
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.44
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.42
PLN02270	808	phospholipase D alpha	99.37
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.36
KOG1028|consensus	421		99.34
KOG1264|consensus	1267		99.33
KOG1011|consensus	1283		99.3
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.2
KOG1031|consensus	1169		99.16
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.04
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.99
KOG1328|consensus	1103		98.9
KOG2059|consensus	800		98.87
KOG2059|consensus	800		98.73
KOG1265|consensus	1189		98.66
KOG1011|consensus	1283		98.65
PLN02352	758	phospholipase D epsilon	98.54
KOG1326|consensus	1105		98.42
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	98.34
KOG1328|consensus	1103		98.28
KOG0905|consensus	1639		98.23
KOG1013|consensus	362		98.11
KOG1013|consensus	362		98.07
KOG1326|consensus	1105		98.02
PLN02964	644	phosphatidylserine decarboxylase	97.89
KOG2060|consensus	405		97.62
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	97.38
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	96.83
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	96.77
KOG1327|consensus	529		96.77
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	96.53
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	96.36
KOG3837|consensus	523		96.23
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	96.01
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	95.15
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	94.63
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	94.61
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	94.44
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	93.42
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	92.2
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	92.08
PF15627	156	CEP76-C2: CEP76 C2 domain	91.92
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	91.25
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	89.84
cd08696	179	C2_Dock-C C2 domains found in Dedicator Of CytoKin	89.26
cd08679	178	C2_DOCK180_related C2 domains found in Dedicator O	88.47
cd08697	185	C2_Dock-D C2 domains found in Dedicator Of CytoKin	87.39
KOG1327|consensus	529		83.94

>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain

Probab=99.94  E-value=1.3e-27  Score=151.13  Aligned_cols=69  Identities=61%  Similarity=1.029  Sum_probs=65.0

Q ss_pred             CccccccCCceeeehhccccCCCCCCCCccEEEEeEEEEEcCCCCCCCCCCC-CCCchhhhcccccCCCC
Q psy13645          1 MKERLREGDHQFYHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQKS-EKDEDDIEANLLLPEGV   69 (191)
Q Consensus         1 l~~iy~~~~h~~~~~W~~L~~p~~~~~~~~G~lk~s~~v~~~gd~~~~~~~~-~~~~~~i~~~~l~~~~~   69 (191)
                      |++||+||+|+|+|||+.|++|+|.++|++|||||+|+|+|+||++++.... .++++|||+|+|+|.|+
T Consensus         3 lgtVY~qP~H~~~~KW~~L~dP~D~~~G~kGYlKv~i~Vlg~GD~~~~~~~~~~~~~ddiE~NLL~P~G~   72 (72)
T PF08151_consen    3 LGTVYNQPDHQFYRKWALLTDPDDTSAGVKGYLKVDISVLGPGDEPPVEKKPTDEDEDDIEKNLLLPAGV   72 (72)
T ss_pred             eeeeecCCCCeeEeceEEecCCCCCccCCceEEEEEEEEEcCCCcCCCCCCCcccccchhhHhcCCCCCC
Confidence            5799999999999999999999999999999999999999999999998876 67789999999999885

They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.93  E-value=7.8e-25  Score=159.89  Aligned_cols=115  Identities=70%  Similarity=1.123  Sum_probs=97.4

Q ss_pred             EEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCceEEE
Q psy13645         77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKI  156 (191)
Q Consensus        77 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i  156 (191)
                      .|.|+|++|++||.||...........+++..+.+||||+|.+++.+.+|++++++.||+|||+|.|++..|+....|.|
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~   80 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI   80 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence            37899999999999996422111111223345678999999999999999999999999999999999888887778999


Q ss_pred             EEEECCCCC-CceEEEEEeeccccccCCCCCccccC
Q psy13645        157 QLRDNDPVN-NTVIGTHYIDLKNISNDGDKGKDYTY  191 (191)
Q Consensus       157 ~v~d~d~~~-d~~iG~~~l~l~~i~~~~~~g~~p~f  191 (191)
                      +|||+|..+ |++||++.++|++|...+.+||||+|
T Consensus        81 ~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~  116 (151)
T cd04018          81 QIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTF  116 (151)
T ss_pred             EEEECCCCCCCCEEEEEEEeHHHhccCCccccCCcc
Confidence            999999987 99999999999999999999999987

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.84  E-value=8.2e-20  Score=126.55  Aligned_cols=98  Identities=23%  Similarity=0.360  Sum_probs=82.7

Q ss_pred             eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCceEE
Q psy13645         76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIK  155 (191)
Q Consensus        76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~  155 (191)
                      +.|.|+|.+|++|+..+..          ....+.+||||++.+++.+.||++++++.||+|||.|.|.+........|.
T Consensus         1 g~l~v~v~~A~~L~~~~~~----------~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~   70 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNM----------TRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQ   70 (108)
T ss_pred             CEEEEEEEeeeCCCCcccc----------CCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEE
Confidence            3689999999999987631          011245799999999989999999999999999999999986555555799


Q ss_pred             EEEEECCCCC-CceEEEEEeeccccccCC
Q psy13645        156 IQLRDNDPVN-NTVIGTHYIDLKNISNDG  183 (191)
Q Consensus       156 i~v~d~d~~~-d~~iG~~~l~l~~i~~~~  183 (191)
                      |+|||++..+ |++||++.++|++|..+.
T Consensus        71 ~~V~D~d~~~~dd~IG~~~l~L~~l~~~~   99 (108)
T cd04039          71 FKVLDKDKFSFNDYVATGSLSVQELLNAA   99 (108)
T ss_pred             EEEEECCCCCCCcceEEEEEEHHHHHhhC
Confidence            9999999988 999999999999997643

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>KOG1030|consensus

Probab=99.83  E-value=3.4e-20  Score=134.51  Aligned_cols=95  Identities=25%  Similarity=0.402  Sum_probs=84.6

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCce
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSR  153 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~  153 (191)
                      ..+.|+|+|.+|.+|...|.              .+.+||||.+++++++.||+++.++.||+|||+|+|.+..|.  ..
T Consensus         4 ~vGLL~v~v~~g~~L~~rD~--------------~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~--~~   67 (168)
T KOG1030|consen    4 LVGLLRVRVKRGKNLAIRDF--------------LGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPN--TP   67 (168)
T ss_pred             cceEEEEEEEeecCeeeecc--------------ccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCC--ce
Confidence            35789999999999987773              266899999999999999999999999999999999987654  55


Q ss_pred             EEEEEEECCCCC-CceEEEEEeeccccccCCC
Q psy13645        154 IKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD  184 (191)
Q Consensus       154 l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~  184 (191)
                      |+++|||+|..+ ||++|.+.|+|..+.+.+.
T Consensus        68 lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~~~   99 (168)
T KOG1030|consen   68 LKVTVYDKDTFSSDDFMGEATIPLKPLLEAQK   99 (168)
T ss_pred             EEEEEEeCCCCCcccccceeeeccHHHHHHhh
Confidence            999999999999 9999999999999876544

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.82  E-value=1e-19  Score=126.93  Aligned_cols=97  Identities=19%  Similarity=0.306  Sum_probs=80.1

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC----eeeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG----LTGKTSVKKNSYNPVWNEQIIFSEMFPP  149 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~----~~~kT~~~~~~~nP~wne~~~f~~~~p~  149 (191)
                      ....|+|+|++|++|+ ++                +.+||||++.+..    .+.+|+++++++||+|||+|.|.+....
T Consensus        12 ~~~~L~V~vikA~~L~-~~----------------g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~   74 (118)
T cd08677          12 QKAELHVNILEAENIS-VD----------------AGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEE   74 (118)
T ss_pred             cCCEEEEEEEEecCCC-CC----------------CCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHH
Confidence            4678999999999998 33                3489999999975    3889999999999999999999975443


Q ss_pred             CC-ceEEEEEEECCCCC-CceEEEEEeecccccc-CCCCCc
Q psy13645        150 LC-SRIKIQLRDNDPVN-NTVIGTHYIDLKNISN-DGDKGK  187 (191)
Q Consensus       150 ~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~-~~~~g~  187 (191)
                      +. ..|.|+|||+|+.+ +++||++.++++.+.. .+.+.|
T Consensus        75 l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W  115 (118)
T cd08677          75 SLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQW  115 (118)
T ss_pred             hCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccch
Confidence            43 35999999999998 9999999999998743 333444

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.82  E-value=1.3e-19  Score=127.53  Aligned_cols=98  Identities=19%  Similarity=0.303  Sum_probs=80.2

Q ss_pred             EEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-------eeeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645         77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-------LTGKTSVKKNSYNPVWNEQIIFSEMFPP  149 (191)
Q Consensus        77 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-------~~~kT~~~~~~~nP~wne~~~f~~~~p~  149 (191)
                      +|+|+|.+|++|+.++               .+.+||||+|++.|       .+.+|+++.+++||+|||.|.|.+....
T Consensus         1 kL~V~Vi~A~~L~~~d---------------~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~   65 (120)
T cd08395           1 KVTVKVVAANDLKWQT---------------TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNED   65 (120)
T ss_pred             CEEEEEEECcCCCccc---------------CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcC
Confidence            4899999999998765               26689999999843       2578999999999999999999985432


Q ss_pred             -CC-ceEEEEEEECCCCC-CceEEEEEeeccccccCCC-CCccc
Q psy13645        150 -LC-SRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDY  189 (191)
Q Consensus       150 -~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p  189 (191)
                       .. ..|.|+|||++..+ +++||++.++|+++..++. +.|+|
T Consensus        66 ~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~  109 (120)
T cd08395          66 DPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLP  109 (120)
T ss_pred             CCceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEE
Confidence             12 34999999999887 9999999999999987665 35554

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.82  E-value=1.1e-19  Score=126.40  Aligned_cols=101  Identities=37%  Similarity=0.507  Sum_probs=86.1

Q ss_pred             EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCcc-ccEEEEEeeCCCC-CceEE
Q psy13645         78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVW-NEQIIFSEMFPPL-CSRIK  155 (191)
Q Consensus        78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~w-ne~~~f~~~~p~~-~~~l~  155 (191)
                      |.|+|++|++|+.++..             .+.+||||++.+++.+.+|++++++.||.| ||.|.|.+..+.+ ...|.
T Consensus         1 l~V~v~~a~~L~~~d~~-------------~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~   67 (110)
T cd08688           1 LKVRVVAARDLPVMDRS-------------SDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQ   67 (110)
T ss_pred             CEEEEEEEECCCccccC-------------CCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEE
Confidence            57999999999988731             366899999999999999999999999999 9999999754433 35699


Q ss_pred             EEEEECCCCC-CceEEEEEeeccccccCC----CCCccccC
Q psy13645        156 IQLRDNDPVN-NTVIGTHYIDLKNISNDG----DKGKDYTY  191 (191)
Q Consensus       156 i~v~d~d~~~-d~~iG~~~l~l~~i~~~~----~~g~~p~f  191 (191)
                      |+|||++..+ +++||++.+++.++...+    -++|+|.+
T Consensus        68 i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~  108 (110)
T cd08688          68 IRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIY  108 (110)
T ss_pred             EEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence            9999999987 899999999999998743    27898853

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.82  E-value=4.9e-19  Score=124.83  Aligned_cols=97  Identities=20%  Similarity=0.227  Sum_probs=81.5

Q ss_pred             eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecC-CCCCccccEEEEEeeCCCCCceE
Q psy13645         76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKN-SYNPVWNEQIIFSEMFPPLCSRI  154 (191)
Q Consensus        76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~-~~nP~wne~~~f~~~~p~~~~~l  154 (191)
                      +.|.|+|.+|++++..+               .+.+||||++.+++.+.+|+++.+ +.||+|||+|.|.+..+  ...|
T Consensus         2 g~L~v~v~~Ak~l~~~~---------------~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~--~~~l   64 (121)
T cd04016           2 GRLSITVVQAKLVKNYG---------------LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG--VDSI   64 (121)
T ss_pred             cEEEEEEEEccCCCcCC---------------CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC--CcEE
Confidence            57999999999887554               256899999999999999999876 79999999999997432  3469


Q ss_pred             EEEEEECCCCC-CceEEEEEeecc-ccccCC-CCCccc
Q psy13645        155 KIQLRDNDPVN-NTVIGTHYIDLK-NISNDG-DKGKDY  189 (191)
Q Consensus       155 ~i~v~d~d~~~-d~~iG~~~l~l~-~i~~~~-~~g~~p  189 (191)
                      .|+|||+|..+ |++||.+.+++. .+..+. .+.|+|
T Consensus        65 ~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~  102 (121)
T cd04016          65 YIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYS  102 (121)
T ss_pred             EEEEEeCCCCcCCceEEEEEEECchhccCCCCccccEe
Confidence            99999999998 999999999996 465544 377876

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.82  E-value=2e-19  Score=127.62  Aligned_cols=97  Identities=24%  Similarity=0.368  Sum_probs=82.7

Q ss_pred             EEEEEEEEecC---CCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCce
Q psy13645         77 RFIIRIYRADG---LPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSR  153 (191)
Q Consensus        77 ~L~v~i~~a~~---L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~  153 (191)
                      .|+|+|.+|++   |+.+|.              .+.+||||++++++++.+|++++++.||+|||+|.|.+..+  ...
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~--------------~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~--~~~   64 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDG--------------RGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP--CTV   64 (126)
T ss_pred             CeEEEEEEeECCcccccccc--------------CCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCC--CCE
Confidence            37899999999   666653              47799999999999999999999999999999999997543  346


Q ss_pred             EEEEEEECCCC-------CCceEEEEEeeccccccCCC-CCccc
Q psy13645        154 IKIQLRDNDPV-------NNTVIGTHYIDLKNISNDGD-KGKDY  189 (191)
Q Consensus       154 l~i~v~d~d~~-------~d~~iG~~~l~l~~i~~~~~-~g~~p  189 (191)
                      |.|+|||++..       +|++||++.++|+.+..+.. +.|+|
T Consensus        65 l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~  108 (126)
T cd08379          65 LTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYP  108 (126)
T ss_pred             EEEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEE
Confidence            99999999886       59999999999999877655 55655

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.81  E-value=7.4e-19  Score=129.70  Aligned_cols=113  Identities=31%  Similarity=0.490  Sum_probs=89.0

Q ss_pred             ceEEEEEEEEecCCCCCCh------HHHHhhhhhhc----------CCCCCccCcEEEEEECCe-eeeeeeecCCCCCcc
Q psy13645         75 HARFIIRIYRADGLPKMNS------SLVANVKKAFT----------GETKDLVDPYVQVSFAGL-TGKTSVKKNSYNPVW  137 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~------~~~~~~~~~~~----------~~~~~~~dpyv~v~~~~~-~~kT~~~~~~~nP~w  137 (191)
                      ++.|.|+|++|++||.||.      .++..+...+.          ....+.+||||+|.+++. ..+|++++++.||+|
T Consensus         6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W   85 (158)
T cd04015           6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW   85 (158)
T ss_pred             eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence            5789999999999999983      22332222110          023567899999999986 469999999999999


Q ss_pred             ccEEEEEeeCCCCCceEEEEEEECCCCCCceEEEEEeeccccccCCC-CCccc
Q psy13645        138 NEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGD-KGKDY  189 (191)
Q Consensus       138 ne~~~f~~~~p~~~~~l~i~v~d~d~~~d~~iG~~~l~l~~i~~~~~-~g~~p  189 (191)
                      ||+|.|.+.  .....|.|+|||++..++++||++.++++++..++. ++|+|
T Consensus        86 nE~F~~~~~--~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~  136 (158)
T cd04015          86 NESFHIYCA--HYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLP  136 (158)
T ss_pred             ceEEEEEcc--CCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEE
Confidence            999999864  345569999999998888899999999999976544 57776

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.81  E-value=2.8e-19  Score=126.51  Aligned_cols=100  Identities=21%  Similarity=0.361  Sum_probs=83.8

Q ss_pred             ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEe-eCC
Q psy13645         75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSE-MFP  148 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~-~~p  148 (191)
                      ...|.|.|.+|++|+.++               .+.+||||++.+.+     .+.+|++++++.||.|||+|.|.+ ...
T Consensus        12 ~~~L~V~Vi~A~~L~~~~---------------~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~   76 (122)
T cd08381          12 NGTLFVMVMHAKNLPLLD---------------GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVE   76 (122)
T ss_pred             CCEEEEEEEEeeCCCCCC---------------CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChH
Confidence            467999999999999876               25689999999974     378999999999999999999986 211


Q ss_pred             CC-CceEEEEEEECCCCC-CceEEEEEeeccccccCCC-CCccc
Q psy13645        149 PL-CSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDY  189 (191)
Q Consensus       149 ~~-~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p  189 (191)
                      .+ ...|.|+|||++..+ +++||++.++|+++..... ++|+|
T Consensus        77 ~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~  120 (122)
T cd08381          77 DLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYP  120 (122)
T ss_pred             HhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEE
Confidence            22 346999999999988 9999999999999986654 78876

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.80  E-value=4.3e-19  Score=126.24  Aligned_cols=98  Identities=18%  Similarity=0.248  Sum_probs=81.6

Q ss_pred             EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCC----CCCce
Q psy13645         78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFP----PLCSR  153 (191)
Q Consensus        78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p----~~~~~  153 (191)
                      ++|+|++|++|+.++.              .+.+||||++.+++.+.+|++++++.||+|||.|.|.+...    .....
T Consensus         1 ~~V~V~~A~~L~~~d~--------------~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~   66 (126)
T cd08682           1 VQVTVLQARGLLCKGK--------------SGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRAT   66 (126)
T ss_pred             CEEEEEECcCCcCCCC--------------CcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCE
Confidence            4789999999998763              46789999999999999999999999999999999987441    12346


Q ss_pred             EEEEEEECCCCC-CceEEEEEeecccccc--CCC-CCccc
Q psy13645        154 IKIQLRDNDPVN-NTVIGTHYIDLKNISN--DGD-KGKDY  189 (191)
Q Consensus       154 l~i~v~d~d~~~-d~~iG~~~l~l~~i~~--~~~-~g~~p  189 (191)
                      |.|+|||++..+ |++||++.++|+++..  +.. ..|+|
T Consensus        67 l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~  106 (126)
T cd08682          67 LQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFK  106 (126)
T ss_pred             EEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEE
Confidence            999999999887 9999999999999873  222 45665

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.80  E-value=1.3e-18  Score=123.58  Aligned_cols=104  Identities=24%  Similarity=0.334  Sum_probs=85.0

Q ss_pred             ccCCCCCccccceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEE
Q psy13645         64 LLPEGVPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIF  143 (191)
Q Consensus        64 l~~~~~~~~~~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f  143 (191)
                      +.|.+..+.+..++|+|+|++|++|+. +.              .+..||||+|.+++.+.+|++++++.||+|||+|.|
T Consensus        16 ~~~~~~~~~~~~~~L~V~V~~A~~L~~-d~--------------~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f   80 (127)
T cd04032          16 VNSNCCPTRRGLATLTVTVLRATGLWG-DY--------------FTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDF   80 (127)
T ss_pred             cCCCcCcCcCCcEEEEEEEEECCCCCc-Cc--------------CCCCCeEEEEEECCccccCceecCCCCCcCCCEEEE
Confidence            334444444567899999999999973 32              356899999999999999999999999999999999


Q ss_pred             EeeCCCCCceEEEEEEECCCCC-CceEEEEEeeccccccC
Q psy13645        144 SEMFPPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISND  182 (191)
Q Consensus       144 ~~~~p~~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~  182 (191)
                      ..........|+|+|||++..+ |++||++.++|.....+
T Consensus        81 ~~~~~~~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~~~  120 (127)
T cd04032          81 GSVELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGVHE  120 (127)
T ss_pred             ecccCCCCCEEEEEEEeCCCCCCCCeeEEEEEEecCCcee
Confidence            7433334567999999999987 99999999999977643

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.80  E-value=7.6e-19  Score=122.28  Aligned_cols=98  Identities=30%  Similarity=0.410  Sum_probs=81.4

Q ss_pred             eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCC-CccCcEEEEEECC---eeeeeeeecCCCCCccccEEEEEeeCCC--
Q psy13645         76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETK-DLVDPYVQVSFAG---LTGKTSVKKNSYNPVWNEQIIFSEMFPP--  149 (191)
Q Consensus        76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~-~~~dpyv~v~~~~---~~~kT~~~~~~~nP~wne~~~f~~~~p~--  149 (191)
                      +.|+|+|++|++|+.++.              . +.+||||++.+.+   ...+|++++++.||+|||.|.|.+..+.  
T Consensus         1 G~L~V~v~~a~~L~~~d~--------------~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~   66 (111)
T cd04041           1 GVLVVTIHRATDLPKADF--------------GTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVK   66 (111)
T ss_pred             CEEEEEEEEeeCCCcccC--------------CCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhcc
Confidence            478999999999998773              3 5689999999854   3689999999999999999999875442  


Q ss_pred             CCceEEEEEEECCCCC-CceEEEEEeeccccccCCCCCccc
Q psy13645        150 LCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKGKDY  189 (191)
Q Consensus       150 ~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~~g~~p  189 (191)
                      ....|.|+|||++..+ +++||++.++++++..  ..+|.|
T Consensus        67 ~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~~--~~~~~~  105 (111)
T cd04041          67 AGERLSCRLWDSDRFTADDRLGRVEIDLKELIE--DRNWMG  105 (111)
T ss_pred             CCCEEEEEEEeCCCCCCCCcceEEEEEHHHHhc--CCCCCc
Confidence            2346999999999988 9999999999999973  445554

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.79  E-value=8.3e-19  Score=124.63  Aligned_cols=104  Identities=23%  Similarity=0.314  Sum_probs=85.6

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEeeCC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSEMFP  148 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~~~p  148 (191)
                      ....|.|.|++|++|+.++.             ..+.+||||++.+.+     .+.||++++++.||.|||.|.|.+...
T Consensus        13 ~~~~L~V~Vi~a~~L~~~~~-------------~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~   79 (125)
T cd04029          13 KTQSLNVHVKECRNLAYGDE-------------AKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHS   79 (125)
T ss_pred             CCCeEEEEEEEecCCCccCC-------------CCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHH
Confidence            45689999999999997763             136789999999853     267999999999999999999997543


Q ss_pred             CCC-ceEEEEEEECCCCC-CceEEEEEeeccccccCCC-CCcccc
Q psy13645        149 PLC-SRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDYT  190 (191)
Q Consensus       149 ~~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p~  190 (191)
                      .+. ..|.|+|||++..+ +++||++.++|..+..... ++|+|.
T Consensus        80 ~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l  124 (125)
T cd04029          80 QLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL  124 (125)
T ss_pred             HhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence            333 46999999999988 9999999999999966544 788874

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.79  E-value=1.5e-18  Score=119.59  Aligned_cols=95  Identities=23%  Similarity=0.403  Sum_probs=82.2

Q ss_pred             EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCceEEEE
Q psy13645         78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQ  157 (191)
Q Consensus        78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i~  157 (191)
                      |.|+|.+|++|+..+.              .+..||||++++++...+|++++++.||.|||.|.|.+..|. .+.|.|+
T Consensus         2 L~V~v~~A~~L~~~~~--------------~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~-~~~l~v~   66 (105)
T cd04050           2 LFVYLDSAKNLPLAKS--------------TKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPE-NQELEIE   66 (105)
T ss_pred             EEEEEeeecCCCCccc--------------CCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCC-CCEEEEE
Confidence            7899999999997763              467999999999999999999999999999999999986554 3469999


Q ss_pred             EEECCCCCCceEEEEEeeccccccCC---CCCccc
Q psy13645        158 LRDNDPVNNTVIGTHYIDLKNISNDG---DKGKDY  189 (191)
Q Consensus       158 v~d~d~~~d~~iG~~~l~l~~i~~~~---~~g~~p  189 (191)
                      |||.+.  +++||++.++|.++....   .++|+|
T Consensus        67 v~d~~~--~~~iG~~~i~l~~l~~~~~~~~~~w~~   99 (105)
T cd04050          67 VKDDKT--GKSLGSLTLPLSELLKEPDLTLDQPFP   99 (105)
T ss_pred             EEECCC--CCccEEEEEEHHHhhccccceeeeeEe
Confidence            999876  889999999999997654   257776

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.79  E-value=9.6e-19  Score=123.26  Aligned_cols=101  Identities=23%  Similarity=0.362  Sum_probs=84.0

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-----eeeeeeecCCCCCccccEEEEEeeCC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-----TGKTSVKKNSYNPVWNEQIIFSEMFP  148 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~~~nP~wne~~~f~~~~p  148 (191)
                      ....|.|+|.+|++|+.++               .+.+||||++.+.+.     +.+|++++++.||.|||+|.|.+...
T Consensus        10 ~~~~L~V~Vi~ar~L~~~~---------------~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~   74 (119)
T cd08685          10 QNRKLTLHVLEAKGLRSTN---------------SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNER   74 (119)
T ss_pred             cCCEEEEEEEEEECCCCCC---------------CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChH
Confidence            3468999999999999876               256899999999752     66899999999999999999997544


Q ss_pred             CCCceEEEEEEECCCCC--CceEEEEEeeccccccCCC-CCccc
Q psy13645        149 PLCSRIKIQLRDNDPVN--NTVIGTHYIDLKNISNDGD-KGKDY  189 (191)
Q Consensus       149 ~~~~~l~i~v~d~d~~~--d~~iG~~~l~l~~i~~~~~-~g~~p  189 (191)
                      .....|.|+|||++...  +++||.+.|+|.++..+.. ++|++
T Consensus        75 ~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~  118 (119)
T cd08685          75 DYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYY  118 (119)
T ss_pred             HhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEe
Confidence            44456999999998764  6899999999999975443 78875

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.79  E-value=1.1e-18  Score=123.65  Aligned_cols=102  Identities=24%  Similarity=0.373  Sum_probs=84.4

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEeeCC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSEMFP  148 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~~~p  148 (191)
                      ....|.|+|++|++|+.++.              .+..||||++.+.+     .+.+|++++++.||.|||.|.|.+..+
T Consensus        14 ~~~~L~V~vi~a~~L~~~~~--------------~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~   79 (125)
T cd04031          14 VTSQLIVTVLQARDLPPRDD--------------GSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRR   79 (125)
T ss_pred             CCCEEEEEEEEecCCCCcCC--------------CCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCH
Confidence            34689999999999998774              36789999999975     378999999999999999999985332


Q ss_pred             -C-CCceEEEEEEECCCCC-CceEEEEEeeccccccCCCCCccc
Q psy13645        149 -P-LCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKGKDY  189 (191)
Q Consensus       149 -~-~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~~g~~p  189 (191)
                       . ....|.|+|||++..+ +++||++.++|++....+.+.|+|
T Consensus        80 ~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~  123 (125)
T cd04031          80 ETLKERTLEVTVWDYDRDGENDFLGEVVIDLADALLDDEPHWYP  123 (125)
T ss_pred             HHhCCCEEEEEEEeCCCCCCCcEeeEEEEecccccccCCcceEE
Confidence             1 2346999999999887 999999999999955555577876

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.78  E-value=3.8e-18  Score=120.17  Aligned_cols=94  Identities=17%  Similarity=0.266  Sum_probs=79.3

Q ss_pred             eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCceEE
Q psy13645         76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIK  155 (191)
Q Consensus        76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~  155 (191)
                      ..|.|+|.+|++|+..+                 ..||||++++++.+.+|++.++ .||.|||+|.|.+..  ....|.
T Consensus         2 ~~L~V~Vv~Ar~L~~~~-----------------~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~--~~~~L~   61 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD-----------------KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINR--LDLGLV   61 (127)
T ss_pred             ceEEEEEEEeeCCCCCC-----------------CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcC--CCCEEE
Confidence            57999999999997543                 3589999999999999999987 599999999999753  345599


Q ss_pred             EEEEECCCCCCceEEEEEeeccccccCCC---CCccc
Q psy13645        156 IQLRDNDPVNNTVIGTHYIDLKNISNDGD---KGKDY  189 (191)
Q Consensus       156 i~v~d~d~~~d~~iG~~~l~l~~i~~~~~---~g~~p  189 (191)
                      |+|||++..+|++||++.++|+++..+..   ..|+|
T Consensus        62 v~V~dkd~~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~   98 (127)
T cd08394          62 IELWNKGLIWDTLVGTVWIPLSTIRQSNEEGPGEWLT   98 (127)
T ss_pred             EEEEeCCCcCCCceEEEEEEhHHcccCCCCCCCccEe
Confidence            99999997779999999999999876544   34655

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.78  E-value=3.6e-18  Score=120.91  Aligned_cols=98  Identities=28%  Similarity=0.390  Sum_probs=83.6

Q ss_pred             EEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCceEEE
Q psy13645         77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKI  156 (191)
Q Consensus        77 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i  156 (191)
                      +|+|+|++|++|+.++.              .+.+||||++.+++...+|++++++.||.|||+|.|.+..+. ...|.|
T Consensus         1 ~L~v~vi~a~~L~~~d~--------------~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~-~~~l~~   65 (123)
T cd04025           1 RLRCHVLEARDLAPKDR--------------NGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGA-DSPLSV   65 (123)
T ss_pred             CEEEEEEEeeCCCCCCC--------------CCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCC-CCEEEE
Confidence            48999999999998774              356899999999999999999999999999999999975443 456999


Q ss_pred             EEEECCCCC-CceEEEEEeeccccccCCC-CCccc
Q psy13645        157 QLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDY  189 (191)
Q Consensus       157 ~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p  189 (191)
                      +|||++..+ +++||.+.++|+++..++. ++|+.
T Consensus        66 ~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~  100 (123)
T cd04025          66 EVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFR  100 (123)
T ss_pred             EEEECCCCCCCcEeEEEEEEHHHcccCCCCCCEEE
Confidence            999999888 9999999999999976543 56653

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.78  E-value=2.9e-18  Score=120.43  Aligned_cols=99  Identities=23%  Similarity=0.400  Sum_probs=82.7

Q ss_pred             eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecC-CCCCccccEEEEEeeCCCCCceE
Q psy13645         76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKN-SYNPVWNEQIIFSEMFPPLCSRI  154 (191)
Q Consensus        76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~-~~nP~wne~~~f~~~~p~~~~~l  154 (191)
                      +.|+|+|.+|++|+..+.              .+.+||||++.+++.+.+|+++.+ +.||.|||.|.|.+..+ ....|
T Consensus         1 g~L~V~v~~A~~L~~~~~--------------~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~-~~~~l   65 (118)
T cd08681           1 GTLVVVVLKARNLPNKRK--------------LDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITED-KKPIL   65 (118)
T ss_pred             CEEEEEEEEccCCCCCCc--------------CCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCC-CCCEE
Confidence            368999999999998774              366899999999999999998754 79999999999997644 34569


Q ss_pred             EEEEEECCCCCCceEEEEEeeccccccCCC-CCccc
Q psy13645        155 KIQLRDNDPVNNTVIGTHYIDLKNISNDGD-KGKDY  189 (191)
Q Consensus       155 ~i~v~d~d~~~d~~iG~~~l~l~~i~~~~~-~g~~p  189 (191)
                      .|+|||++..++++||++.++++++..++. +.|++
T Consensus        66 ~i~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~  101 (118)
T cd08681          66 KVAVFDDDKRKPDLIGDTEVDLSPALKEGEFDDWYE  101 (118)
T ss_pred             EEEEEeCCCCCCcceEEEEEecHHHhhcCCCCCcEE
Confidence            999999988778999999999999865433 56654

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.78  E-value=1.8e-18  Score=122.86  Aligned_cols=102  Identities=23%  Similarity=0.311  Sum_probs=83.7

Q ss_pred             ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645         75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSEMFPP  149 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~~~p~  149 (191)
                      ...|.|+|++|++|+.++.             ..+.+||||++.+.+     .+.+|++++++.||+|||.|.|.+....
T Consensus        14 ~~~L~V~vi~a~~L~~~d~-------------~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~   80 (125)
T cd08393          14 LRELHVHVIQCQDLAAADP-------------KKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREE   80 (125)
T ss_pred             CCEEEEEEEEeCCCCCcCC-------------CCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHH
Confidence            4579999999999998873             126789999999853     2579999999999999999999974333


Q ss_pred             CC-ceEEEEEEECCCCC-CceEEEEEeeccccccCC-CCCccc
Q psy13645        150 LC-SRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDG-DKGKDY  189 (191)
Q Consensus       150 ~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~-~~g~~p  189 (191)
                      +. ..|.|+|||++..+ +++||++.++|.++...+ ...|+|
T Consensus        81 l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~  123 (125)
T cd08393          81 LPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYP  123 (125)
T ss_pred             hCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEE
Confidence            33 46999999999887 999999999999996543 366776

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.78  E-value=2.9e-18  Score=121.08  Aligned_cols=97  Identities=21%  Similarity=0.353  Sum_probs=82.0

Q ss_pred             EEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-eeeeeeeecCCCCCccccEEEEEeeCCCCCceEE
Q psy13645         77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-LTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIK  155 (191)
Q Consensus        77 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~  155 (191)
                      +|+|+|.+|++|+.++.              .+.+||||++.+++ ...+|++++++.||.|||.|.|.+..  ....|.
T Consensus         1 ~L~v~v~~a~~L~~~d~--------------~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~--~~~~l~   64 (121)
T cd04042           1 QLDIHLKEGRNLAARDR--------------GGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIED--VTQPLY   64 (121)
T ss_pred             CeEEEEEEeeCCCCcCC--------------CCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecC--CCCeEE
Confidence            47899999999998774              36789999999988 48899999999999999999999753  346799


Q ss_pred             EEEEECCCCC-CceEEEEEeeccccccCCC-CCccc
Q psy13645        156 IQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDY  189 (191)
Q Consensus       156 i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p  189 (191)
                      |+|||++..+ +++||++.++++++..++. +.|+|
T Consensus        65 ~~v~D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~  100 (121)
T cd04042          65 IKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLK  100 (121)
T ss_pred             EEEEeCCCCCCCcceEEEEEEHHHcCCCCCeEEEEE
Confidence            9999999986 9999999999999886543 34443

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.78  E-value=3.4e-18  Score=125.06  Aligned_cols=99  Identities=17%  Similarity=0.261  Sum_probs=83.7

Q ss_pred             EEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecC-CCCCccccEEEEEeeCCCCCceEE
Q psy13645         77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKN-SYNPVWNEQIIFSEMFPPLCSRIK  155 (191)
Q Consensus        77 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~-~~nP~wne~~~f~~~~p~~~~~l~  155 (191)
                      +|.|+|++|++|+.++.              .+.+||||++.++++..+|+++.+ +.||+|||.|.|.+..|. ...|.
T Consensus         1 ~L~V~Vi~A~~L~~~d~--------------~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~-~~~l~   65 (150)
T cd04019           1 YLRVTVIEAQDLVPSDK--------------NRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPF-EDHLI   65 (150)
T ss_pred             CEEEEEEEeECCCCCCC--------------CCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCcc-CCeEE
Confidence            47899999999998884              467999999999999999999976 699999999999975543 34699


Q ss_pred             EEEEECCCCC-CceEEEEEeeccccccCC-----CCCcccc
Q psy13645        156 IQLRDNDPVN-NTVIGTHYIDLKNISNDG-----DKGKDYT  190 (191)
Q Consensus       156 i~v~d~d~~~-d~~iG~~~l~l~~i~~~~-----~~g~~p~  190 (191)
                      |+|||++..+ +++||++.++|+++..+.     .++|+|.
T Consensus        66 v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L  106 (150)
T cd04019          66 LSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSL  106 (150)
T ss_pred             EEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEEC
Confidence            9999999876 999999999999986532     2577763

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.78  E-value=4.7e-18  Score=123.38  Aligned_cols=100  Identities=21%  Similarity=0.372  Sum_probs=81.9

Q ss_pred             ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-----eeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645         75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-----TGKTSVKKNSYNPVWNEQIIFSEMFPP  149 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~~~nP~wne~~~f~~~~p~  149 (191)
                      ...|.|.|.+|++|+.++.             ..+.+||||++++.+.     +.||++++++.||+|||+|.|.+.  .
T Consensus        28 ~~~L~V~Vi~ArnL~~~~~-------------~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~--l   92 (146)
T cd04028          28 KGQLEVEVIRARGLVQKPG-------------SKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS--P   92 (146)
T ss_pred             CCEEEEEEEEeeCCCcccC-------------CCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc--C
Confidence            3579999999999987642             1467899999999542     789999999999999999999986  2


Q ss_pred             CCceEEEEEE-ECCCCC-CceEEEEEeeccccccCCC-CCccc
Q psy13645        150 LCSRIKIQLR-DNDPVN-NTVIGTHYIDLKNISNDGD-KGKDY  189 (191)
Q Consensus       150 ~~~~l~i~v~-d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p  189 (191)
                      ....|.|+|| |++..+ +++||++.++|+.+..++. .+|++
T Consensus        93 ~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~  135 (146)
T cd04028          93 TGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYK  135 (146)
T ss_pred             CCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEe
Confidence            3456999999 577776 8999999999999854433 57765

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.77  E-value=3.5e-18  Score=121.66  Aligned_cols=99  Identities=18%  Similarity=0.366  Sum_probs=82.3

Q ss_pred             EEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCC--CceE
Q psy13645         77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPL--CSRI  154 (191)
Q Consensus        77 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~--~~~l  154 (191)
                      +|+|+|++|++|+.++.              .+.+||||++.+++.+.+|++++++.||.|||.|.|.+..+..  ...|
T Consensus         1 ~L~V~vi~A~~L~~~d~--------------~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l   66 (127)
T cd04022           1 KLVVEVVDAQDLMPKDG--------------QGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVL   66 (127)
T ss_pred             CeEEEEEEeeCCCCCCC--------------CCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeE
Confidence            48999999999998774              3668999999999999999999999999999999999754332  2469


Q ss_pred             EEEEEECCCC--CCceEEEEEeeccccccCCC--CCccc
Q psy13645        155 KIQLRDNDPV--NNTVIGTHYIDLKNISNDGD--KGKDY  189 (191)
Q Consensus       155 ~i~v~d~d~~--~d~~iG~~~l~l~~i~~~~~--~g~~p  189 (191)
                      .|+|||++..  ++++||++.++++++...+.  ..|+|
T Consensus        67 ~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~  105 (127)
T cd04022          67 EVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYP  105 (127)
T ss_pred             EEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeE
Confidence            9999999877  48999999999999874333  45554

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.77  E-value=5.2e-18  Score=118.82  Aligned_cols=97  Identities=25%  Similarity=0.367  Sum_probs=82.7

Q ss_pred             EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCceEEEE
Q psy13645         78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQ  157 (191)
Q Consensus        78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i~  157 (191)
                      ++|+|++|++|+.++.              .+.+||||++.+++.+.+|++++++.||.|||+|.|.+..+ ....|.|+
T Consensus         2 ~~V~v~~a~~L~~~~~--------------~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~v~   66 (116)
T cd08376           2 VTIVLVEGKNLPPMDD--------------NGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDD-QSQILEIE   66 (116)
T ss_pred             EEEEEEEEECCCCCCC--------------CCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCC-CCCEEEEE
Confidence            6899999999998774              35689999999999999999999999999999999997543 34579999


Q ss_pred             EEECCCCC-CceEEEEEeeccccccCCC-CCccc
Q psy13645        158 LRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDY  189 (191)
Q Consensus       158 v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p  189 (191)
                      |||++..+ +++||++.++|+++..++. +.|+|
T Consensus        67 v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~  100 (116)
T cd08376          67 VWDKDTGKKDEFIGRCEIDLSALPREQTHSLELE  100 (116)
T ss_pred             EEECCCCCCCCeEEEEEEeHHHCCCCCceEEEEE
Confidence            99999987 9999999999999876543 34443

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.77  E-value=3.8e-18  Score=120.90  Aligned_cols=102  Identities=25%  Similarity=0.347  Sum_probs=84.3

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe---eeeeeeecCCCCCccccEEEEEeeCCCC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL---TGKTSVKKNSYNPVWNEQIIFSEMFPPL  150 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~---~~kT~~~~~~~nP~wne~~~f~~~~p~~  150 (191)
                      ....|.|+|++|++|+.++.              .+..||||++.+.+.   ..+|++++++.||.|||.|.|.+..+.+
T Consensus        14 ~~~~L~V~v~~a~~L~~~d~--------------~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l   79 (124)
T cd08385          14 QSNQLTVGIIQAADLPAMDM--------------GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSEL   79 (124)
T ss_pred             CCCEEEEEEEEeeCCCCccC--------------CCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHh
Confidence            34689999999999998774              356899999998643   6799999999999999999999754333


Q ss_pred             C-ceEEEEEEECCCCC-CceEEEEEeeccccccCCC-CCccc
Q psy13645        151 C-SRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDY  189 (191)
Q Consensus       151 ~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p  189 (191)
                      . ..|.|+|||++..+ +++||++.++|+++..+.. +.|++
T Consensus        80 ~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~  121 (124)
T cd08385          80 GNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRD  121 (124)
T ss_pred             CCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEE
Confidence            3 46999999999887 9999999999999866433 67765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.76  E-value=1.1e-17  Score=120.43  Aligned_cols=93  Identities=26%  Similarity=0.365  Sum_probs=82.8

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCce
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSR  153 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~  153 (191)
                      ..+.|+|+|.+|++|+.++.              .+.+||||++.+++...+|++++++.||.|||.|.|.+..+. ...
T Consensus        13 ~~G~L~V~Vi~A~~L~~~d~--------------~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~-~~~   77 (136)
T cd08375          13 GIGRLMVVIVEGRDLKPCNS--------------NGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLE-QDV   77 (136)
T ss_pred             CcEEEEEEEEEeeCCCCCCC--------------CCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCcc-CCE
Confidence            46899999999999998773              367899999999999999999999999999999999985443 356


Q ss_pred             EEEEEEECCCCC-CceEEEEEeecccccc
Q psy13645        154 IKIQLRDNDPVN-NTVIGTHYIDLKNISN  181 (191)
Q Consensus       154 l~i~v~d~d~~~-d~~iG~~~l~l~~i~~  181 (191)
                      |.|+|||++..+ |++||++.+++.++..
T Consensus        78 l~i~V~D~d~~~~d~~lG~~~i~l~~l~~  106 (136)
T cd08375          78 LCITVFDRDFFSPDDFLGRTEIRVADILK  106 (136)
T ss_pred             EEEEEEECCCCCCCCeeEEEEEEHHHhcc
Confidence            999999999887 9999999999999876

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.76  E-value=6.1e-18  Score=121.40  Aligned_cols=101  Identities=25%  Similarity=0.357  Sum_probs=84.6

Q ss_pred             ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-------eeeeeeeecCCCCCccccEEEEEeeC
Q psy13645         75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-------LTGKTSVKKNSYNPVWNEQIIFSEMF  147 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-------~~~kT~~~~~~~nP~wne~~~f~~~~  147 (191)
                      ...|.|+|++|++|+.++.              .+..||||+|++.+       ...+|++++++.||+|||.|.|.+..
T Consensus        15 ~~~L~V~Vi~A~~L~~~~~--------------~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~   80 (133)
T cd04009          15 EQSLRVEILNARNLLPLDS--------------NGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPP   80 (133)
T ss_pred             CCEEEEEEEEeeCCCCcCC--------------CCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEech
Confidence            3579999999999998773              36689999999863       37899999999999999999999753


Q ss_pred             CC---CCceEEEEEEECCCCC-CceEEEEEeeccccccCCC----CCccc
Q psy13645        148 PP---LCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD----KGKDY  189 (191)
Q Consensus       148 p~---~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~----~g~~p  189 (191)
                      ..   ....|.|+|||++..+ +++||++.++|+++..-++    .||.|
T Consensus        81 ~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~  130 (133)
T cd04009          81 EQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGVEDTSSAQGFGP  130 (133)
T ss_pred             hhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCccccccccccccc
Confidence            22   2346999999999988 9999999999999987655    47766

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.76  E-value=6.3e-18  Score=117.62  Aligned_cols=98  Identities=29%  Similarity=0.384  Sum_probs=83.3

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCC---
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPL---  150 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~---  150 (191)
                      +.+.|+|+|++|++|+  .                +..||||++.+++++.+|++++++.||.|||.|.|.+..+..   
T Consensus         2 ~~~~l~V~v~~a~~L~--~----------------~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~   63 (111)
T cd04011           2 QDFQVRVRVIEARQLV--G----------------GNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELF   63 (111)
T ss_pred             CcEEEEEEEEEcccCC--C----------------CCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHh
Confidence            3578999999999998  1                458999999999999999999999999999999999755442   


Q ss_pred             CceEEEEEEECCCCC-CceEEEEEeeccccccCCC----CCccc
Q psy13645        151 CSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD----KGKDY  189 (191)
Q Consensus       151 ~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~----~g~~p  189 (191)
                      ...|.|+|||++..+ +++||++.++|+++..+..    ..|+|
T Consensus        64 ~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~  107 (111)
T cd04011          64 DKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLL  107 (111)
T ss_pred             cCeEEEEEEcCcccccCCccEEEEECCccccCCCCCcceEEEEE
Confidence            246999999999887 9999999999999976544    35655

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.76  E-value=9.8e-18  Score=118.46  Aligned_cols=97  Identities=20%  Similarity=0.239  Sum_probs=81.6

Q ss_pred             EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-eeeeeeecCCCCCccccEEEEEeeCCCCCceEEE
Q psy13645         78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKI  156 (191)
Q Consensus        78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i  156 (191)
                      |.|+|++|++|+.++.             ..+.+||||.+.+.+. ..+|++++++.||.|||+|.|.+.  .....|.|
T Consensus         2 l~v~v~~a~~L~~~~~-------------~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~--~~~~~l~~   66 (121)
T cd08401           2 LKIKIGEAKNLPPRSG-------------PNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIP--RTFRHLSF   66 (121)
T ss_pred             eEEEEEEccCCCCCCC-------------CCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcC--CCCCEEEE
Confidence            6789999999998752             1357899999999876 689999999999999999999974  32356999


Q ss_pred             EEEECCCCC-CceEEEEEeeccccccCCC-CCccc
Q psy13645        157 QLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDY  189 (191)
Q Consensus       157 ~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p  189 (191)
                      .|||++..+ +++||.+.++++++..++. ++|+|
T Consensus        67 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~  101 (121)
T cd08401          67 YIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFP  101 (121)
T ss_pred             EEEECCCCCCCceEEEEEEEHHHccCCCCcEeeEE
Confidence            999999987 9999999999999976443 67766

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.76  E-value=6.5e-18  Score=120.45  Aligned_cols=104  Identities=21%  Similarity=0.255  Sum_probs=84.6

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-----eeeeeeecCCCCCccccEEEEEeeCC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-----TGKTSVKKNSYNPVWNEQIIFSEMFP  148 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~~~nP~wne~~~f~~~~p  148 (191)
                      ....|.|+|.+|++|+.++.             ..+..||||++++.+.     +.||++++++.||+|||+|.|++...
T Consensus        13 ~~~~L~V~V~~a~nL~~~d~-------------~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~   79 (128)
T cd08392          13 RTSCLEITIKACRNLAYGDE-------------KKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEAD   79 (128)
T ss_pred             CCCEEEEEEEecCCCCccCC-------------CCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHH
Confidence            34689999999999998773             1367899999998632     77999999999999999999997543


Q ss_pred             CCC-ceEEEEEEECCCCC-CceEEEEEeeccccccCCC----CCcccc
Q psy13645        149 PLC-SRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD----KGKDYT  190 (191)
Q Consensus       149 ~~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~----~g~~p~  190 (191)
                      .+. ..|.|+|||.+..+ +++||++.|+|+++.....    ..|+|.
T Consensus        80 ~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l  127 (128)
T cd08392          80 LLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL  127 (128)
T ss_pred             HhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence            333 46999999999887 9999999999999855422    467763

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.76  E-value=6.5e-18  Score=118.93  Aligned_cols=92  Identities=26%  Similarity=0.386  Sum_probs=78.6

Q ss_pred             EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC---eeeeeeeecCCCCCccccEEEEEeeCCCCCceE
Q psy13645         78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG---LTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRI  154 (191)
Q Consensus        78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l  154 (191)
                      |+|+|.+|++|+..+.              .+.+||||++.+.+   .+.+|++++++.||.|||+|.|.+..+ ....|
T Consensus         2 L~V~vi~a~~L~~~~~--------------~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~-~~~~l   66 (119)
T cd04036           2 LTVRVLRATNITKGDL--------------LSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ-VKNVL   66 (119)
T ss_pred             eEEEEEEeeCCCccCC--------------CCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcc-cCCEE
Confidence            6899999999998763              35689999999864   478999999999999999999997544 34569


Q ss_pred             EEEEEECCCCCCceEEEEEeeccccccCCC
Q psy13645        155 KIQLRDNDPVNNTVIGTHYIDLKNISNDGD  184 (191)
Q Consensus       155 ~i~v~d~d~~~d~~iG~~~l~l~~i~~~~~  184 (191)
                      .|+|||++..++++||++.++++++..+..
T Consensus        67 ~v~v~d~d~~~~~~iG~~~~~l~~l~~g~~   96 (119)
T cd04036          67 ELTVMDEDYVMDDHLGTVLFDVSKLKLGEK   96 (119)
T ss_pred             EEEEEECCCCCCcccEEEEEEHHHCCCCCc
Confidence            999999998788999999999999876544

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.76  E-value=1.6e-17  Score=120.74  Aligned_cols=90  Identities=29%  Similarity=0.491  Sum_probs=80.2

Q ss_pred             eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCceEE
Q psy13645         76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIK  155 (191)
Q Consensus        76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~  155 (191)
                      +.|+|+|.+|++|+..+.               +.+||||++.+++++.+|++++++.||+|||+|.|.+..|  ...|.
T Consensus         2 G~L~V~Vi~a~nL~~~d~---------------~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~--~~~l~   64 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDF---------------TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP--MAPLK   64 (145)
T ss_pred             eEEEEEEEeeECCCCCCC---------------CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC--CCEEE
Confidence            579999999999987662               5689999999999999999999999999999999997654  56699


Q ss_pred             EEEEECCCCC-CceEEEEEeeccccccC
Q psy13645        156 IQLRDNDPVN-NTVIGTHYIDLKNISND  182 (191)
Q Consensus       156 i~v~d~d~~~-d~~iG~~~l~l~~i~~~  182 (191)
                      |+|||++..+ |++||++.+++.++...
T Consensus        65 ~~V~D~d~~~~dd~iG~a~i~l~~l~~~   92 (145)
T cd04038          65 LEVFDKDTFSKDDSMGEAEIDLEPLVEA   92 (145)
T ss_pred             EEEEECCCCCCCCEEEEEEEEHHHhhhh
Confidence            9999999988 99999999999998654

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.76  E-value=4.7e-18  Score=121.23  Aligned_cols=100  Identities=21%  Similarity=0.300  Sum_probs=80.0

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-----eeeeeeecCCC-CCccccEEEEEeeC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-----TGKTSVKKNSY-NPVWNEQIIFSEMF  147 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~~~-nP~wne~~~f~~~~  147 (191)
                      ...+|+|.|++|++|++++.              .+..||||+|++.+.     +.||++++++. +|.|||+|.|.+..
T Consensus        12 ~~~rLtV~VikarnL~~~~~--------------~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~   77 (135)
T cd08692          12 VNSRIQLQILEAQNLPSSST--------------PLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQ   77 (135)
T ss_pred             cCCeEEEEEEEccCCCcccC--------------CCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCc
Confidence            46789999999999998752              355799999997542     88999999985 69999999999876


Q ss_pred             CCCCceEEEEEEECCCCC-CceEEEEEeeccccccCCCCCc
Q psy13645        148 PPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKGK  187 (191)
Q Consensus       148 p~~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~~g~  187 (191)
                      +..+..+.|+|||++..+ +++||++.+..+.....+.+.|
T Consensus        78 ~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~~~~~~~hW  118 (135)
T cd08692          78 QEHGIQFLIKLYSRSSVRRKHFLGQVWISSDSSSSEAVEQW  118 (135)
T ss_pred             hhheeEEEEEEEeCCCCcCCceEEEEEECCccCCchhhhhH
Confidence            555456999999999887 9999999999877433333443

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.75  E-value=1.2e-17  Score=118.29  Aligned_cols=102  Identities=15%  Similarity=0.210  Sum_probs=84.2

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC------eeeeeeeecCCCCCccccEEEEEeeC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG------LTGKTSVKKNSYNPVWNEQIIFSEMF  147 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~------~~~kT~~~~~~~nP~wne~~~f~~~~  147 (191)
                      ....|.|.|.+|+||+.++.              .+.+||||++.+.+      .+.+|++++++.||+|||.|.|++..
T Consensus        12 ~~~~L~V~V~~arnL~~~~~--------------~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~   77 (124)
T cd08680          12 GDSSLVISVEQLRNLSALSI--------------PENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISS   77 (124)
T ss_pred             CCCEEEEEEeEecCCccccc--------------CCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCH
Confidence            45689999999999998763              46789999999853      26899999999999999999999754


Q ss_pred             CCCC-ceEEEEEEECCCCC-CceEEEEEeeccccccCC--CCCccc
Q psy13645        148 PPLC-SRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDG--DKGKDY  189 (191)
Q Consensus       148 p~~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~--~~g~~p  189 (191)
                      ..+. ..|.|+|||++..+ +++||.+.++|+++...+  ...|++
T Consensus        78 ~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~  123 (124)
T cd08680          78 TKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYN  123 (124)
T ss_pred             HHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCcccccccc
Confidence            3333 46999999999887 999999999999995544  356764

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.75  E-value=4.7e-17  Score=120.52  Aligned_cols=119  Identities=22%  Similarity=0.372  Sum_probs=91.1

Q ss_pred             cEEEEeEEEEEcCCCCCCCCCCCCCCchhhhcccccCCCCCccccceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCC
Q psy13645         30 KGYLKCDISVIGKGDTVKIPQKSEKDEDDIEANLLLPEGVPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKD  109 (191)
Q Consensus        30 ~G~lk~s~~v~~~gd~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~  109 (191)
                      +|-|++++....+.++-....                  -  ....+.|.|+|.+|++|+.++.              .+
T Consensus         1 ~G~l~~~l~y~~~~~~~~~~~------------------~--~~~~g~L~V~Vi~A~nL~~~d~--------------~g   46 (162)
T cd04020           1 RGELKVALKYVPPESEGALKS------------------K--KPSTGELHVWVKEAKNLPALKS--------------GG   46 (162)
T ss_pred             CceEEEEEEecCccccccccc------------------c--CCCCceEEEEEEeeeCCCCCCC--------------CC
Confidence            477888888766554411110                  0  0135789999999999998873              46


Q ss_pred             ccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEeeCC-CC-CceEEEEEEECCCCC-CceEEEEEeecccccc
Q psy13645        110 LVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSEMFP-PL-CSRIKIQLRDNDPVN-NTVIGTHYIDLKNISN  181 (191)
Q Consensus       110 ~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~~~p-~~-~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~  181 (191)
                      .+||||++.+..     .+.+|++++++.||.|||.|.|.+..+ .. ...|.|+|||++..+ +++||++.+++.++..
T Consensus        47 ~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~  126 (162)
T cd04020          47 TSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKS  126 (162)
T ss_pred             CCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCcccc
Confidence            789999998842     378999999999999999999985322 22 235999999999988 9999999999999865


Q ss_pred             C
Q psy13645        182 D  182 (191)
Q Consensus       182 ~  182 (191)
                      .
T Consensus       127 ~  127 (162)
T cd04020         127 Y  127 (162)
T ss_pred             C
Confidence            4

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.75  E-value=2.3e-17  Score=117.34  Aligned_cols=97  Identities=22%  Similarity=0.443  Sum_probs=79.6

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-eeeeeeecCCCCCccccEEEEEeeCCCCCc
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-TGKTSVKKNSYNPVWNEQIIFSEMFPPLCS  152 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~~~nP~wne~~~f~~~~p~~~~  152 (191)
                      +...|+|+|++|++|+..+                 .+||||++.+++. ..+|++. ++.||.|||+|.|.+..+.. .
T Consensus         2 ~~~~L~V~Vi~A~~L~~~~-----------------~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~-~   62 (126)
T cd08400           2 QVRSLQLNVLEAHKLPVKH-----------------VPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDV-N   62 (126)
T ss_pred             ceeEEEEEEEEeeCCCCCC-----------------CCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCc-C
Confidence            3467999999999998532                 4799999999885 5788874 58999999999998644433 3


Q ss_pred             eEEEEEEECCCCC-CceEEEEEeeccccccCCC-CCccc
Q psy13645        153 RIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDY  189 (191)
Q Consensus       153 ~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p  189 (191)
                      .+.|.|||++..+ +++||.+.++|+++..++. +.|++
T Consensus        63 ~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~~~~W~~  101 (126)
T cd08400          63 SFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWYP  101 (126)
T ss_pred             EEEEEEEECCCCCCCCeEEEEEEEHhHccCCCcccEeEE
Confidence            5899999999887 9999999999999887655 56665

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.75  E-value=1.5e-17  Score=121.21  Aligned_cols=98  Identities=20%  Similarity=0.364  Sum_probs=81.4

Q ss_pred             EEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEeeC----
Q psy13645         77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSEMF----  147 (191)
Q Consensus        77 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~~~----  147 (191)
                      +|+|+|++|++|+. .               .+.+||||+|.+.+     .+.+|++++++.||+|||.|.|.+..    
T Consensus         1 kL~V~Vi~ArnL~~-~---------------~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~   64 (148)
T cd04010           1 KLSVRVIECSDLAL-K---------------NGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSP   64 (148)
T ss_pred             CEEEEEEeCcCCCC-C---------------CCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEeccccc
Confidence            47899999999986 2               36789999999987     47899999999999999999999841    


Q ss_pred             -------CC--CC-ceEEEEEEECCCCC-CceEEEEEeeccccccC--CCCCcccc
Q psy13645        148 -------PP--LC-SRIKIQLRDNDPVN-NTVIGTHYIDLKNISND--GDKGKDYT  190 (191)
Q Consensus       148 -------p~--~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~--~~~g~~p~  190 (191)
                             |.  .. ..|.|+|||++..+ +++||++.|+|+.+..+  ...+|+|.
T Consensus        65 ~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L  120 (148)
T cd04010          65 EKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFL  120 (148)
T ss_pred             ccccccCCcccccEEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeec
Confidence                   21  12 35999999999887 99999999999999876  33678774

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.75  E-value=1.1e-17  Score=119.40  Aligned_cols=103  Identities=20%  Similarity=0.292  Sum_probs=81.7

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC---eeeeeeeecCCCCCccccEEEEE-eeCCC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG---LTGKTSVKKNSYNPVWNEQIIFS-EMFPP  149 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~~~nP~wne~~~f~-~~~p~  149 (191)
                      ....|+|+|++|++|+.++.             ..+..||||++.+.+   .+.||++++++.||.|||+|.|. +....
T Consensus        14 ~~~~L~V~Vi~a~~L~~~~~-------------~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~   80 (128)
T cd08388          14 EKKALLVNIIECRDLPAMDE-------------QSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQ   80 (128)
T ss_pred             CCCEEEEEEEEeECCCCCCC-------------CCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHH
Confidence            34689999999999998773             126689999999863   36799999999999999999994 32111


Q ss_pred             -CCceEEEEEEECCCCC-CceEEEEEeeccccccCCC---CCccc
Q psy13645        150 -LCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD---KGKDY  189 (191)
Q Consensus       150 -~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~---~g~~p  189 (191)
                       ....|.|+|||++..+ +++||++.++|+++...++   ..|+|
T Consensus        81 ~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~  125 (128)
T cd08388          81 LQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSRE  125 (128)
T ss_pred             hCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEe
Confidence             1235999999999887 9999999999999965533   46665

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.74  E-value=1.5e-17  Score=117.46  Aligned_cols=87  Identities=26%  Similarity=0.481  Sum_probs=76.1

Q ss_pred             EEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCceEEE
Q psy13645         77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKI  156 (191)
Q Consensus        77 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i  156 (191)
                      +|.|+|.+|++|+.+                  .+||||++.+++.+.+|++++++.||+|||+|.|.+..+ ....|.|
T Consensus         1 ~L~V~Vi~a~~L~~~------------------~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~-~~~~L~~   61 (121)
T cd08378           1 YLYVRVVKARGLPAN------------------SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRL-QGSTLEV   61 (121)
T ss_pred             CEEEEEEEecCCCcc------------------cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCC-cCCEEEE
Confidence            489999999999864                  269999999999999999999999999999999996433 3456999


Q ss_pred             EEEECCCCCCceEEEEEeeccccccC
Q psy13645        157 QLRDNDPVNNTVIGTHYIDLKNISND  182 (191)
Q Consensus       157 ~v~d~d~~~d~~iG~~~l~l~~i~~~  182 (191)
                      +|||++..++++||++.++++++...
T Consensus        62 ~v~d~d~~~~~~lG~~~i~l~~l~~~   87 (121)
T cd08378          62 SVWDKDKAKDDFLGGVCFDLSEVPTR   87 (121)
T ss_pred             EEEeCCCCcCceeeeEEEEhHhCcCC
Confidence            99999977799999999999998654

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.74  E-value=4.2e-17  Score=115.57  Aligned_cols=100  Identities=26%  Similarity=0.468  Sum_probs=84.4

Q ss_pred             eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecC-CCCCccccEEEEEeeCCCC--Cc
Q psy13645         76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKN-SYNPVWNEQIIFSEMFPPL--CS  152 (191)
Q Consensus        76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~-~~nP~wne~~~f~~~~p~~--~~  152 (191)
                      +.|.|+|++|++|+.++.              .+..||||++.+++...+|++.++ +.||.|||.|.|.+..+..  ..
T Consensus         1 g~L~V~V~~A~~L~~~~~--------------~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~   66 (124)
T cd04049           1 GTLEVLLISAKGLQDTDF--------------LGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDT   66 (124)
T ss_pred             CeEEEEEEecCCCCCCCC--------------CCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCC
Confidence            368999999999998763              356899999999999889999885 8999999999999865532  34


Q ss_pred             eEEEEEEECCCCC-CceEEEEEeeccccccCCC-CCccc
Q psy13645        153 RIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDY  189 (191)
Q Consensus       153 ~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p  189 (191)
                      .|.|+|||.+..+ +++||++.+++.++..++. ++|++
T Consensus        67 ~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~  105 (124)
T cd04049          67 KLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAE  105 (124)
T ss_pred             EEEEEEEECccCCCCCeEEEEEEEhHHhhhCCCCcCceE
Confidence            6999999999887 9999999999999976554 67765

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>KOG0696|consensus

Probab=99.74  E-value=1.4e-18  Score=142.20  Aligned_cols=100  Identities=26%  Similarity=0.382  Sum_probs=90.3

Q ss_pred             ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-----eeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645         75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-----TGKTSVKKNSYNPVWNEQIIFSEMFPP  149 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~~~nP~wne~~~f~~~~p~  149 (191)
                      ...|+|.|.+|++|.+||.              ++.+||||++.+.+.     +.+|++++.++||+|||+|+|.+...+
T Consensus       179 ~~~l~v~i~ea~NLiPMDp--------------NGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~D  244 (683)
T KOG0696|consen  179 RDVLTVTIKEAKNLIPMDP--------------NGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSD  244 (683)
T ss_pred             CceEEEEehhhccccccCC--------------CCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEeccccc
Confidence            4578899999999999995              789999999998753     789999999999999999999987666


Q ss_pred             CCceEEEEEEECCCCC-CceEEEEEeeccccccCCCCCcc
Q psy13645        150 LCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKGKD  188 (191)
Q Consensus       150 ~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~~g~~  188 (191)
                      .+.+|.|+|||||+.+ +||+|...+.+++|.....+||+
T Consensus       245 kdrRlsiEvWDWDrTsRNDFMGslSFgisEl~K~p~~GWy  284 (683)
T KOG0696|consen  245 KDRRLSIEVWDWDRTSRNDFMGSLSFGISELQKAPVDGWY  284 (683)
T ss_pred             ccceeEEEEecccccccccccceecccHHHHhhcchhhHH
Confidence            6778999999999998 99999999999999998888875

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.74  E-value=1.9e-17  Score=117.71  Aligned_cols=101  Identities=25%  Similarity=0.454  Sum_probs=84.1

Q ss_pred             ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645         75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSEMFPP  149 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~~~p~  149 (191)
                      ...|.|+|++|++|+.++.              .+.+||||++.+.+     .+.+|++++++.||.|||.|.|.+....
T Consensus        15 ~~~L~V~vi~a~~L~~~~~--------------~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~   80 (127)
T cd04030          15 RQKLIVTVHKCRNLPPCDS--------------SDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEE   80 (127)
T ss_pred             CCEEEEEEEEEECCCCccC--------------CCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHH
Confidence            4689999999999998874              36789999999863     4789999999999999999999975433


Q ss_pred             CC-ceEEEEEEECCCC--C-CceEEEEEeeccccccCCC-CCccc
Q psy13645        150 LC-SRIKIQLRDNDPV--N-NTVIGTHYIDLKNISNDGD-KGKDY  189 (191)
Q Consensus       150 ~~-~~l~i~v~d~d~~--~-d~~iG~~~l~l~~i~~~~~-~g~~p  189 (191)
                      +. ..|.|+|||++..  + +++||.+.++|.++..++. .+|++
T Consensus        81 l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~  125 (127)
T cd04030          81 LKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYD  125 (127)
T ss_pred             hcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEE
Confidence            33 4699999999874  5 9999999999999966544 68876

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.74  E-value=2.7e-17  Score=115.79  Aligned_cols=104  Identities=28%  Similarity=0.312  Sum_probs=84.7

Q ss_pred             EEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCceEEE
Q psy13645         77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKI  156 (191)
Q Consensus        77 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i  156 (191)
                      .|+|+|++|++|+.++...        .+...+.+||||++.+++...+|++++++.||.|||+|.|.+..+ ....|.|
T Consensus         2 ~l~v~v~~a~~L~~~d~~~--------~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~-~~~~l~i   72 (121)
T cd08391           2 VLRIHVIEAQDLVAKDKFV--------GGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEV-PGQELEI   72 (121)
T ss_pred             eEEEEEEEccCCccccccc--------ccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCC-CCCEEEE
Confidence            5899999999999876410        001135689999999999999999999999999999999987533 3456999


Q ss_pred             EEEECCCCCCceEEEEEeeccccccCCC-CCccc
Q psy13645        157 QLRDNDPVNNTVIGTHYIDLKNISNDGD-KGKDY  189 (191)
Q Consensus       157 ~v~d~d~~~d~~iG~~~l~l~~i~~~~~-~g~~p  189 (191)
                      +|||++..++++||.+.++++++...+. +.|+|
T Consensus        73 ~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~  106 (121)
T cd08391          73 ELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLP  106 (121)
T ss_pred             EEEecCCCCCCcEEEEEEEHHHhcccCccceEEE
Confidence            9999987778999999999999976554 56765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.74  E-value=2.2e-17  Score=117.05  Aligned_cols=102  Identities=19%  Similarity=0.282  Sum_probs=84.2

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC---eeeeeeeecCCCCCccccEEEEEeeCCCC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG---LTGKTSVKKNSYNPVWNEQIIFSEMFPPL  150 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~~~nP~wne~~~f~~~~p~~  150 (191)
                      ..+.|.|+|++|++|+.++.              .+..||||++.+..   ...+|++++++.||.|||.|.|.+....+
T Consensus        14 ~~~~L~V~v~~a~~L~~~d~--------------~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l   79 (124)
T cd08387          14 DMGILNVKLIQARNLQPRDF--------------SGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQEL   79 (124)
T ss_pred             CCCEEEEEEEEeeCCCCCCC--------------CCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHh
Confidence            34689999999999998773              35689999999842   37899999999999999999998643332


Q ss_pred             C-ceEEEEEEECCCCC-CceEEEEEeeccccccCCC-CCccc
Q psy13645        151 C-SRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDY  189 (191)
Q Consensus       151 ~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p  189 (191)
                      . ..|.|+|||++..+ +++||++.++|+++..++. +.|++
T Consensus        80 ~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~  121 (124)
T cd08387          80 PKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRK  121 (124)
T ss_pred             CCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEE
Confidence            2 36999999999887 9999999999999975544 66765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.74  E-value=2.6e-17  Score=116.33  Aligned_cols=103  Identities=26%  Similarity=0.342  Sum_probs=83.9

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEeeCC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSEMFP  148 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~~~p  148 (191)
                      ....|.|+|++|++|+.++.             ..+..||||++.+.+     .+.+|++++++.||.|||+|.|.+...
T Consensus        12 ~~~~L~V~v~~a~~L~~~~~-------------~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~   78 (123)
T cd08521          12 KTGSLEVHIKECRNLAYADE-------------KKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKS   78 (123)
T ss_pred             CCCEEEEEEEEecCCCCcCC-------------CCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHH
Confidence            45689999999999998772             135689999999853     367999999999999999999986433


Q ss_pred             CC-CceEEEEEEECCCCC-CceEEEEEeeccccccCCC-CCccc
Q psy13645        149 PL-CSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDY  189 (191)
Q Consensus       149 ~~-~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p  189 (191)
                      .+ ...|.|+|||++..+ +++||++.++|+++..++. ++|+|
T Consensus        79 ~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~  122 (123)
T cd08521          79 QLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYP  122 (123)
T ss_pred             HhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEE
Confidence            32 346999999999887 8999999999999955443 78876

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.73  E-value=6.6e-17  Score=114.05  Aligned_cols=97  Identities=26%  Similarity=0.537  Sum_probs=83.4

Q ss_pred             eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-eeeeeeecCCCCCccccEEEEEeeCCCCCceE
Q psy13645         76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRI  154 (191)
Q Consensus        76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l  154 (191)
                      +.|+|+|.+|++|+..+.              .+..||||++.+.+. ..+|++++++.||.|||.|.|.+..+  ...|
T Consensus         1 g~L~V~Vi~a~~L~~~d~--------------~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~--~~~L   64 (120)
T cd04045           1 GVLRLHIRKANDLKNLEG--------------VGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP--NQKI   64 (120)
T ss_pred             CeEEEEEEeeECCCCccC--------------CCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC--CCEE
Confidence            368899999999998773              367899999999875 78999999999999999999987543  3579


Q ss_pred             EEEEEECCCCC-CceEEEEEeeccccccCCCCCcc
Q psy13645        155 KIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKGKD  188 (191)
Q Consensus       155 ~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~~g~~  188 (191)
                      .|+|||++..+ +++||++.+++.++.....+||+
T Consensus        65 ~v~v~d~~~~~~d~~IG~~~~~l~~l~~~~~~~~~   99 (120)
T cd04045          65 TLEVMDYEKVGKDRSLGSVEINVSDLIKKNEDGKY   99 (120)
T ss_pred             EEEEEECCCCCCCCeeeEEEEeHHHhhCCCCCceE
Confidence            99999999988 89999999999999887666664

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.73  E-value=9.6e-17  Score=114.14  Aligned_cols=90  Identities=26%  Similarity=0.410  Sum_probs=79.0

Q ss_pred             ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCceE
Q psy13645         75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRI  154 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l  154 (191)
                      .+.++|+|.+|++|+..+.              .+..||||++.+++...+|++++++.||.|||.|.|.+..+  ...|
T Consensus         2 ~~~~~V~v~~A~~L~~~d~--------------~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~l   65 (126)
T cd04046           2 QVVTQVHVHSAEGLSKQDS--------------GGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP--RSPI   65 (126)
T ss_pred             cEEEEEEEEeCcCCCCCCC--------------CCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCC--CCEE
Confidence            4689999999999998763              46799999999999999999999999999999999986533  4569


Q ss_pred             EEEEEECCCCCCceEEEEEeeccccc
Q psy13645        155 KIQLRDNDPVNNTVIGTHYIDLKNIS  180 (191)
Q Consensus       155 ~i~v~d~d~~~d~~iG~~~l~l~~i~  180 (191)
                      .|+|||++..+|++||.+.+++..+.
T Consensus        66 ~i~V~d~~~~~d~~lG~~~~~l~~~~   91 (126)
T cd04046          66 KIQVWNSNLLCDEFLGQATLSADPND   91 (126)
T ss_pred             EEEEEECCCCCCCceEEEEEecccCC
Confidence            99999999877999999999998754

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.73  E-value=5.2e-17  Score=115.17  Aligned_cols=103  Identities=23%  Similarity=0.341  Sum_probs=83.2

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEEC---CeeeeeeeecCCCCCccccEEEEEeeCC-C
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFA---GLTGKTSVKKNSYNPVWNEQIIFSEMFP-P  149 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~---~~~~kT~~~~~~~nP~wne~~~f~~~~p-~  149 (191)
                      ....|.|+|++|++|+.++.              .+..||||++.+.   +...+|++++++.||.|||+|.|.+... .
T Consensus        14 ~~~~L~v~v~~a~~L~~~d~--------------~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~   79 (125)
T cd08386          14 QESTLTLKILKAVELPAKDF--------------SGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEK   79 (125)
T ss_pred             CCCEEEEEEEEecCCCCccC--------------CCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHH
Confidence            34689999999999998774              3568999999984   3478999999999999999999974211 1


Q ss_pred             -CCceEEEEEEECCCCC-CceEEEEEeeccccccCCC-CCcccc
Q psy13645        150 -LCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDYT  190 (191)
Q Consensus       150 -~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p~  190 (191)
                       ....|.|+|||++..+ +++||++.++++++..+.. +.|.+.
T Consensus        80 l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l  123 (125)
T cd08386          80 LQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDL  123 (125)
T ss_pred             hCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEec
Confidence             1245999999999887 9999999999999976544 677653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.73  E-value=7.6e-17  Score=113.87  Aligned_cols=96  Identities=24%  Similarity=0.326  Sum_probs=81.4

Q ss_pred             EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-eeeeeeecCCCCCccccEEEEEeeCCCCCceEEE
Q psy13645         78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKI  156 (191)
Q Consensus        78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i  156 (191)
                      |.|+|.+|++|+.++.              .+..||||++.+++. ..+|++++++.||.|||.|.|.+.  .....|.|
T Consensus         2 l~v~vi~a~~L~~~d~--------------~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~--~~~~~l~v   65 (121)
T cd04054           2 LYIRIVEGKNLPAKDI--------------TGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLP--PGFHTVSF   65 (121)
T ss_pred             EEEEEEEeeCCcCCCC--------------CCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeC--CCCCEEEE
Confidence            7899999999998874              356899999999886 579999999999999999999864  33356999


Q ss_pred             EEEECCCCC-CceEEEEEeeccccccCC--CCCccc
Q psy13645        157 QLRDNDPVN-NTVIGTHYIDLKNISNDG--DKGKDY  189 (191)
Q Consensus       157 ~v~d~d~~~-d~~iG~~~l~l~~i~~~~--~~g~~p  189 (191)
                      +|||++..+ +++||++.++++++...+  .+.|++
T Consensus        66 ~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~  101 (121)
T cd04054          66 YVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMN  101 (121)
T ss_pred             EEEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEE
Confidence            999999988 999999999999887543  366765

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.73  E-value=8.6e-17  Score=113.01  Aligned_cols=97  Identities=20%  Similarity=0.327  Sum_probs=82.0

Q ss_pred             eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCceEE
Q psy13645         76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIK  155 (191)
Q Consensus        76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~  155 (191)
                      +.|.|+|++|++|+.++.              .+..||||++++.+...+|++++++.||.|||+|.|.+.  .....|.
T Consensus         1 g~l~v~v~~a~~L~~~~~--------------~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~--~~~~~l~   64 (119)
T cd08377           1 GFLQVKVIRASGLAAADI--------------GGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIK--DIHDVLE   64 (119)
T ss_pred             CEEEEEEEeeeCCCCCCC--------------CCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEec--CcCCEEE
Confidence            468999999999998774              356899999999998899999999999999999999964  3456799


Q ss_pred             EEEEECCCCC-CceEEEEEeeccccccCCCCCccc
Q psy13645        156 IQLRDNDPVN-NTVIGTHYIDLKNISNDGDKGKDY  189 (191)
Q Consensus       156 i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~~g~~p  189 (191)
                      |+|||++..+ +++||++.+++.++..+ ...|++
T Consensus        65 ~~v~d~~~~~~~~~iG~~~~~l~~~~~~-~~~~~~   98 (119)
T cd08377          65 VTVYDEDKDKKPEFLGKVAIPLLSIKNG-ERKWYA   98 (119)
T ss_pred             EEEEECCCCCCCceeeEEEEEHHHCCCC-CceEEE
Confidence            9999999876 99999999999998643 334443

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.72  E-value=7.4e-17  Score=118.06  Aligned_cols=100  Identities=23%  Similarity=0.343  Sum_probs=84.5

Q ss_pred             ccceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-----------------------------e
Q psy13645         73 RQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-----------------------------T  123 (191)
Q Consensus        73 ~~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-----------------------------~  123 (191)
                      .+...|.|+|++|++|+.+|.              .+.+||||++.+.+.                             .
T Consensus        25 ~~~~~L~V~vi~a~~L~~~d~--------------~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (153)
T cd08676          25 PPIFVLKVTVIEAKGLLAKDV--------------NGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSI   90 (153)
T ss_pred             CCeEEEEEEEEeccCCcccCC--------------CCCCCceEEEEEccccccccccccccccccccccccccccccccc
Confidence            367899999999999998874              467999999998532                             3


Q ss_pred             eeeeeecCCCCCccccEEEEEeeCCCCCceEEEEEEECCCCCCceEEEEEeeccccccCCCCCcccc
Q psy13645        124 GKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGDKGKDYT  190 (191)
Q Consensus       124 ~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i~v~d~d~~~d~~iG~~~l~l~~i~~~~~~g~~p~  190 (191)
                      .+|++++++.||.|||.|.|.+..+. ...|.|+|||++   +++||++.++++++...+-++|+|.
T Consensus        91 ~kT~v~~~tlnP~WnE~F~f~v~~~~-~~~L~i~V~D~d---d~~IG~v~i~l~~l~~~~~d~W~~L  153 (153)
T cd08676          91 KVTEVKPQTLNPVWNETFRFEVEDVS-NDQLHLDIWDHD---DDFLGCVNIPLKDLPSCGLDSWFKL  153 (153)
T ss_pred             EecceecCCCCCccccEEEEEeccCC-CCEEEEEEEecC---CCeEEEEEEEHHHhCCCCCCCeEeC
Confidence            68999999999999999999975432 456999999997   8899999999999987667899873

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.72  E-value=6.2e-17  Score=115.78  Aligned_cols=101  Identities=25%  Similarity=0.374  Sum_probs=86.6

Q ss_pred             eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEeeCCCC
Q psy13645         76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSEMFPPL  150 (191)
Q Consensus        76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~~~p~~  150 (191)
                      ..|+|+|++|++|+..+.              .+..||||++.+.+     ...+|++++++.+|.|||+|.|.+..+..
T Consensus        13 ~~l~v~i~~a~nL~~~~~--------------~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~   78 (131)
T cd04026          13 NKLTVEVREAKNLIPMDP--------------NGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADK   78 (131)
T ss_pred             CEEEEEEEEeeCCCCcCC--------------CCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhc
Confidence            679999999999998763              35689999999964     47899999999999999999999765545


Q ss_pred             CceEEEEEEECCCCC-CceEEEEEeeccccccCCCCCcccc
Q psy13645        151 CSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKGKDYT  190 (191)
Q Consensus       151 ~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~~g~~p~  190 (191)
                      ...|.|+|||++..+ +++||++.++++++.....++|++.
T Consensus        79 ~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~w~~L  119 (131)
T cd04026          79 DRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKMPVDGWYKL  119 (131)
T ss_pred             CCEEEEEEEECCCCCCcceeEEEEEeHHHhCcCccCceEEC
Confidence            567999999999887 9999999999999987666788764

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.72  E-value=7.2e-17  Score=114.75  Aligned_cols=93  Identities=25%  Similarity=0.321  Sum_probs=79.9

Q ss_pred             eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCceEE
Q psy13645         76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIK  155 (191)
Q Consensus        76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~  155 (191)
                      +.|+|+|++|++|+..+..            ..+..||||++.+++...+|++++++.||.|||+|.|.+..+ ....|.
T Consensus         1 g~l~v~v~~a~~L~~~~~~------------~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~-~~~~l~   67 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRS------------GKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSA-QNQLLK   67 (128)
T ss_pred             CEEEEEEEEeeCCCcccCC------------CCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCC-CCCEEE
Confidence            3689999999999977630            135689999999999999999999999999999999998543 245699


Q ss_pred             EEEEECCCCC-CceEEEEEeecccccc
Q psy13645        156 IQLRDNDPVN-NTVIGTHYIDLKNISN  181 (191)
Q Consensus       156 i~v~d~d~~~-d~~iG~~~l~l~~i~~  181 (191)
                      |+|||++..+ +++||++.+++.++..
T Consensus        68 i~v~d~~~~~~~~~lG~~~i~l~~~~~   94 (128)
T cd04024          68 LILWDKDRFAGKDYLGEFDIALEEVFA   94 (128)
T ss_pred             EEEEECCCCCCCCcceEEEEEHHHhhc
Confidence            9999999886 9999999999999874

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.72  E-value=8e-17  Score=114.52  Aligned_cols=93  Identities=18%  Similarity=0.423  Sum_probs=77.8

Q ss_pred             EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC--eeeeeeeecCCCCCccccEEEEEeeCCCCCceEE
Q psy13645         78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG--LTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIK  155 (191)
Q Consensus        78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~  155 (191)
                      |.|+|.+|++|+. .               .+.+||||++.+.+  .+.+|++++++.||.|||.|.|.+. + ....|.
T Consensus         1 l~v~v~~A~~L~~-~---------------~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~-~-~~~~l~   62 (126)
T cd08678           1 LLVKNIKANGLSE-A---------------AGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELS-P-NSKELL   62 (126)
T ss_pred             CEEEEEEecCCCC-C---------------CCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeC-C-CCCEEE
Confidence            5789999999986 2               36789999999974  4789999999999999999999973 2 245699


Q ss_pred             EEEEECCCCC-CceEEEEEeeccccccCCC-CCcc
Q psy13645        156 IQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKD  188 (191)
Q Consensus       156 i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~  188 (191)
                      |+|||++..+ +++||++.++++++..... ..|+
T Consensus        63 ~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~   97 (126)
T cd08678          63 FEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIF   97 (126)
T ss_pred             EEEEECCCCCCCceEEEEEEeHHHhccCCceeEEE
Confidence            9999999987 9999999999999876543 3444

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.72  E-value=2.4e-17  Score=118.71  Aligned_cols=93  Identities=23%  Similarity=0.335  Sum_probs=76.6

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-----eeeeeeecCCCCCccccEEEEEeeCC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-----TGKTSVKKNSYNPVWNEQIIFSEMFP  148 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~~~nP~wne~~~f~~~~p  148 (191)
                      ....|.|.|.+|++|+.++..            ..+.+||||++++...     +.||++++++.||+|||.|.|.+...
T Consensus        13 ~~~~L~V~V~karnL~~~d~~------------~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~   80 (138)
T cd08407          13 AANRLLVVVIKAKNLHSDQLK------------LLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSE   80 (138)
T ss_pred             CCCeEEEEEEEecCCCccccC------------CCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHH
Confidence            456799999999999988731            1234899999998753     67899999999999999999996533


Q ss_pred             CCC-ceEEEEEEECCCCC-CceEEEEEeeccc
Q psy13645        149 PLC-SRIKIQLRDNDPVN-NTVIGTHYIDLKN  178 (191)
Q Consensus       149 ~~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~  178 (191)
                      .+. ..|.|+|||+|..+ +++||.+.+.+..
T Consensus        81 ~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~  112 (138)
T cd08407          81 LLAASSVELEVLNQDSPGQSLPLGRCSLGLHT  112 (138)
T ss_pred             HhCccEEEEEEEeCCCCcCcceeceEEecCcC
Confidence            333 35999999999988 9999999999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.71  E-value=2.5e-17  Score=118.52  Aligned_cols=91  Identities=26%  Similarity=0.360  Sum_probs=75.6

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-----eeeeeeecCCCCCccccEEEEEeeCC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-----TGKTSVKKNSYNPVWNEQIIFSEMFP  148 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~~~nP~wne~~~f~~~~p  148 (191)
                      ....|.|.|++|++|+.++.              .+.+||||++.+.+.     +.||++++++.||+|||+|.|.+...
T Consensus        13 ~~~~L~V~Vi~A~nL~~~~~--------------~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~   78 (136)
T cd08406          13 TAERLTVVVVKARNLVWDNG--------------KTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAI   78 (136)
T ss_pred             CCCEEEEEEEEeeCCCCccC--------------CCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHH
Confidence            34689999999999998773              467899999998542     66899999999999999999996443


Q ss_pred             CCC-ceEEEEEEECCCCC-CceEEEEEeeccc
Q psy13645        149 PLC-SRIKIQLRDNDPVN-NTVIGTHYIDLKN  178 (191)
Q Consensus       149 ~~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~  178 (191)
                      .+. ..|.|+|||+|..+ +++||++.+....
T Consensus        79 ~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~  110 (136)
T cd08406          79 VLQDLSLRVTVAESTEDGKTPNVGHVIIGPAA  110 (136)
T ss_pred             HhCCcEEEEEEEeCCCCCCCCeeEEEEECCCC
Confidence            333 35999999999887 9999999997653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.71  E-value=1.7e-16  Score=114.21  Aligned_cols=92  Identities=26%  Similarity=0.461  Sum_probs=76.1

Q ss_pred             eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEee-CCC-----
Q psy13645         76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEM-FPP-----  149 (191)
Q Consensus        76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~-~p~-----  149 (191)
                      ++|+|+|++|++|+.++.              .+..||||++.+++.+.+|++++++.||.|||.|.|.+. .+.     
T Consensus         1 ~~l~v~V~~a~~L~~~d~--------------~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~   66 (135)
T cd04017           1 FQLRAYIYQARDLLAADK--------------SGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEI   66 (135)
T ss_pred             CEEEEEEEEeecCcCCCC--------------CCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHh
Confidence            478999999999998874              467899999999999999999999999999999999742 211     


Q ss_pred             --CCceEEEEEEECCCCC-CceEEEEEe-ecccccc
Q psy13645        150 --LCSRIKIQLRDNDPVN-NTVIGTHYI-DLKNISN  181 (191)
Q Consensus       150 --~~~~l~i~v~d~d~~~-d~~iG~~~l-~l~~i~~  181 (191)
                        ....|.|+|||++..+ |++||++.+ ++..+..
T Consensus        67 ~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~  102 (135)
T cd04017          67 AQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDL  102 (135)
T ss_pred             hcCCCEEEEEEEeCcCCCCCccceEEEeeeeeeccc
Confidence              1235999999999988 999999986 5544443

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.71  E-value=1.6e-16  Score=112.75  Aligned_cols=89  Identities=24%  Similarity=0.397  Sum_probs=77.0

Q ss_pred             EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCee--eeeeeecCCCCCccccEEEEEeeCCCCCceEE
Q psy13645         78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLT--GKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIK  155 (191)
Q Consensus        78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~--~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~  155 (191)
                      ++|.|++|++|+.++.              .+.+||||++.+++..  .+|++++++.||.|||+|.|.+..+. ...|.
T Consensus         2 lrV~Vi~a~~L~~~d~--------------~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~-~~~L~   66 (124)
T cd04037           2 VRVYVVRARNLQPKDP--------------NGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPG-NSILK   66 (124)
T ss_pred             EEEEEEECcCCCCCCC--------------CCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCC-CCEEE
Confidence            6899999999998874              3678999999999874  67888899999999999999976554 44699


Q ss_pred             EEEEECCCCC-CceEEEEEeecccccc
Q psy13645        156 IQLRDNDPVN-NTVIGTHYIDLKNISN  181 (191)
Q Consensus       156 i~v~d~d~~~-d~~iG~~~l~l~~i~~  181 (191)
                      |+|||++..+ +++||++.+++++..-
T Consensus        67 ~~V~d~d~~~~dd~iG~~~i~l~~~~~   93 (124)
T cd04037          67 ISVMDYDLLGSDDLIGETVIDLEDRFF   93 (124)
T ss_pred             EEEEECCCCCCCceeEEEEEeeccccc
Confidence            9999999987 9999999999987653

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.71  E-value=1e-16  Score=113.36  Aligned_cols=103  Identities=20%  Similarity=0.358  Sum_probs=84.1

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC---eeeeeeeecCCCCCccccEEEEEeeCCCC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG---LTGKTSVKKNSYNPVWNEQIIFSEMFPPL  150 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~~~nP~wne~~~f~~~~p~~  150 (191)
                      ....|.|+|++|++|+.++.             ..+..||||++++.+   ...+|++++++.||+|||.|.|.+.....
T Consensus        12 ~~~~L~V~v~~a~~L~~~~~-------------~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l   78 (123)
T cd08390          12 EEEQLTVSLIKARNLPPRTK-------------DVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKEL   78 (123)
T ss_pred             CCCEEEEEEEEecCCCCccC-------------CCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHh
Confidence            45689999999999998762             135689999999843   36789999999999999999999644332


Q ss_pred             C-ceEEEEEEECCCCC-CceEEEEEeeccccccCCC-CCccc
Q psy13645        151 C-SRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDY  189 (191)
Q Consensus       151 ~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p  189 (191)
                      . ..|.|+|||++..+ +++||++.++|+++..... ..|+|
T Consensus        79 ~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~  120 (123)
T cd08390          79 QRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRD  120 (123)
T ss_pred             cccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEe
Confidence            2 46999999999887 9999999999999977655 46765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.71  E-value=1.9e-16  Score=111.92  Aligned_cols=94  Identities=29%  Similarity=0.445  Sum_probs=80.9

Q ss_pred             eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC--eeeeeeeecCCCCCccccEEEEEeeCCCCCce
Q psy13645         76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG--LTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSR  153 (191)
Q Consensus        76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~  153 (191)
                      +.|.|+|++|++|+..+.             ..+..||||++.+.+  ...+|++++++.||.|||.|.|.+.  .....
T Consensus         2 g~l~v~v~~a~~L~~~~~-------------~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~--~~~~~   66 (124)
T cd04044           2 GVLAVTIKSARGLKGSDI-------------IGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVN--SLTEP   66 (124)
T ss_pred             eEEEEEEEcccCCCcccc-------------cCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeC--CCCCE
Confidence            578999999999986542             134589999999998  6899999999999999999999875  34567


Q ss_pred             EEEEEEECCCCC-CceEEEEEeeccccccCCC
Q psy13645        154 IKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD  184 (191)
Q Consensus       154 l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~  184 (191)
                      |.|+|||++..+ +++||.+.++|.++...+.
T Consensus        67 l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~   98 (124)
T cd04044          67 LNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPE   98 (124)
T ss_pred             EEEEEEecCCCCCCceeEEEEEEHHHhccCcc
Confidence            999999999887 9999999999999987654

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.71  E-value=1.8e-16  Score=112.83  Aligned_cols=96  Identities=27%  Similarity=0.428  Sum_probs=79.6

Q ss_pred             eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCceEE
Q psy13645         76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIK  155 (191)
Q Consensus        76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~  155 (191)
                      +.|+|+|++|++|+.++.              .+..||||++.+++...+|++++++.||.|||+|.|.+..+  ...|.
T Consensus         1 ~~L~V~vi~a~~L~~~d~--------------~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~--~~~l~   64 (127)
T cd04027           1 AKISITVVCAQGLIAKDK--------------TGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS--SDRIK   64 (127)
T ss_pred             CeEEEEEEECcCCcCCCC--------------CCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC--CCEEE
Confidence            478999999999998773              35689999999998899999999999999999999987533  34699


Q ss_pred             EEEEECCCC-----------C-CceEEEEEeeccccccCCCCCcc
Q psy13645        156 IQLRDNDPV-----------N-NTVIGTHYIDLKNISNDGDKGKD  188 (191)
Q Consensus       156 i~v~d~d~~-----------~-d~~iG~~~l~l~~i~~~~~~g~~  188 (191)
                      |+|||+|..           + +++||.+.+++.++.. ..+.|+
T Consensus        65 i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~~-~~~~w~  108 (127)
T cd04027          65 VRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSG-EMDVWY  108 (127)
T ss_pred             EEEEECCCCcccccceeccccCCCcceEEEEEhHHccC-CCCeEE
Confidence            999999852           3 8999999999998753 233443

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.71  E-value=1.4e-16  Score=114.20  Aligned_cols=91  Identities=23%  Similarity=0.426  Sum_probs=77.9

Q ss_pred             EEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-------eeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645         77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-------TGKTSVKKNSYNPVWNEQIIFSEMFPP  149 (191)
Q Consensus        77 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-------~~kT~~~~~~~nP~wne~~~f~~~~p~  149 (191)
                      .|+|+|++|++|+.++.              .+.+||||++.+.+.       +.+|++++++.||.|||+|.|.+. + 
T Consensus         1 ~L~v~Vi~a~~L~~~d~--------------~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~-~-   64 (133)
T cd04033           1 ILRVKVLAGIDLAKKDI--------------FGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVN-P-   64 (133)
T ss_pred             CEEEEEEEeECCCcccC--------------CCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEc-C-
Confidence            37899999999998773              356899999999764       579999999999999999999974 2 


Q ss_pred             CCceEEEEEEECCCCC-CceEEEEEeeccccccCC
Q psy13645        150 LCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDG  183 (191)
Q Consensus       150 ~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~  183 (191)
                      ....|.|+|||++..+ +++||++.+++.++....
T Consensus        65 ~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~   99 (133)
T cd04033          65 REHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTET   99 (133)
T ss_pred             CCCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcC
Confidence            2346999999999987 999999999999987654

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.71  E-value=6e-17  Score=116.12  Aligned_cols=91  Identities=27%  Similarity=0.447  Sum_probs=77.8

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEeeCC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSEMFP  148 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~~~p  148 (191)
                      ....|.|+|++|++|+.++.              .+..||||++.+.+     .+.+|++++++.||.|||+|.|.+..+
T Consensus        11 ~~~~L~V~Vi~a~~L~~~d~--------------~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~   76 (133)
T cd08384          11 QRRGLIVGIIRCVNLAAMDA--------------NGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHS   76 (133)
T ss_pred             CCCEEEEEEEEEcCCCCcCC--------------CCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHH
Confidence            45789999999999998874              35689999999864     267999999999999999999997544


Q ss_pred             CCC-ceEEEEEEECCCCC-CceEEEEEeeccc
Q psy13645        149 PLC-SRIKIQLRDNDPVN-NTVIGTHYIDLKN  178 (191)
Q Consensus       149 ~~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~  178 (191)
                      .+. ..|.|+|||++..+ +++||.+.+++..
T Consensus        77 ~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~  108 (133)
T cd08384          77 DLAKKTLEITVWDKDIGKSNDYIGGLQLGINA  108 (133)
T ss_pred             HhCCCEEEEEEEeCCCCCCccEEEEEEEecCC
Confidence            333 46999999999887 9999999999975

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.70  E-value=1.8e-16  Score=114.34  Aligned_cols=97  Identities=23%  Similarity=0.383  Sum_probs=80.9

Q ss_pred             EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEEC----CeeeeeeeecCCCCCccccEEEEEeeCCC----
Q psy13645         78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFA----GLTGKTSVKKNSYNPVWNEQIIFSEMFPP----  149 (191)
Q Consensus        78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~----~~~~kT~~~~~~~nP~wne~~~f~~~~p~----  149 (191)
                      |+|+|++|++|+.+ .              .+..||||++.+.    +...+|++++++.||.|||.|.|.+..+.    
T Consensus         1 L~V~Vi~A~~L~~~-~--------------~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~   65 (137)
T cd08675           1 LSVRVLECRDLALK-S--------------NGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEK   65 (137)
T ss_pred             CEEEEEEccCCCcc-c--------------CCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccc
Confidence            57899999999876 3              3568999999998    56899999999999999999999975542    


Q ss_pred             ----------CCceEEEEEEECCCCC-CceEEEEEeeccccccCCC-CCccc
Q psy13645        150 ----------LCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDY  189 (191)
Q Consensus       150 ----------~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p  189 (191)
                                ....|.|+|||++..+ +++||++.+++.++...+. ..|++
T Consensus        66 ~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~  117 (137)
T cd08675          66 KSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYF  117 (137)
T ss_pred             cccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEe
Confidence                      2346999999999886 9999999999999875443 56655

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.69  E-value=3.2e-16  Score=111.23  Aligned_cols=90  Identities=27%  Similarity=0.313  Sum_probs=76.9

Q ss_pred             EEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe---eeeeeeecCCCCCccccEEEEEeeCCCCCce
Q psy13645         77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL---TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSR  153 (191)
Q Consensus        77 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~---~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~  153 (191)
                      .|+|+|++|++|+.++.              .+.+||||++...+.   ..+|++++++.||.|||+|.|.+..+ ....
T Consensus         2 ~~~V~v~~a~~L~~~~~--------------~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~-~~~~   66 (126)
T cd04043           2 LFTIRIVRAENLKADSS--------------NGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAG-EPLW   66 (126)
T ss_pred             EEEEEEEEeECCCCCCC--------------CCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCC-CCCE
Confidence            68999999999998773              467899999998653   67999999999999999999997543 3456


Q ss_pred             EEEEEEECCCCC-CceEEEEEeecccccc
Q psy13645        154 IKIQLRDNDPVN-NTVIGTHYIDLKNISN  181 (191)
Q Consensus       154 l~i~v~d~d~~~-d~~iG~~~l~l~~i~~  181 (191)
                      |.|+|||++..+ +++||++.++|+.+..
T Consensus        67 L~i~v~d~d~~~~~~~iG~~~i~l~~~~~   95 (126)
T cd04043          67 ISATVWDRSFVGKHDLCGRASLKLDPKRF   95 (126)
T ss_pred             EEEEEEECCCCCCCceEEEEEEecCHHHc
Confidence            999999999887 9999999999987643

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.69  E-value=5.3e-17  Score=116.94  Aligned_cols=90  Identities=36%  Similarity=0.508  Sum_probs=76.0

Q ss_pred             ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC--e---eeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645         75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG--L---TGKTSVKKNSYNPVWNEQIIFSEMFPP  149 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~---~~kT~~~~~~~nP~wne~~~f~~~~p~  149 (191)
                      ...|.|+|.+|++|+.++.              .+.+||||++.+.+  .   +.+|++++++.||.|||+|.|.+....
T Consensus        14 ~~~L~V~vi~a~~L~~~d~--------------~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~   79 (136)
T cd08404          14 TNRLTVVVLKARHLPKMDV--------------SGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEE   79 (136)
T ss_pred             CCeEEEEEEEeeCCCcccc--------------CCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHH
Confidence            4579999999999998874              36789999999853  2   578999999999999999999975433


Q ss_pred             CC-ceEEEEEEECCCCC-CceEEEEEeeccc
Q psy13645        150 LC-SRIKIQLRDNDPVN-NTVIGTHYIDLKN  178 (191)
Q Consensus       150 ~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~  178 (191)
                      .. ..|.|+|||++..+ +++||++.+++..
T Consensus        80 ~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~  110 (136)
T cd08404          80 LEDISVEFLVLDSDRVTKNEVIGRLVLGPKA  110 (136)
T ss_pred             hCCCEEEEEEEECCCCCCCccEEEEEECCcC
Confidence            32 35889999999988 9999999999988

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.69  E-value=8e-17  Score=115.90  Aligned_cols=90  Identities=24%  Similarity=0.355  Sum_probs=74.1

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEEC-C----eeeeeeeecCCCCCccccEEEEEeeCC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFA-G----LTGKTSVKKNSYNPVWNEQIIFSEMFP  148 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~-~----~~~kT~~~~~~~nP~wne~~~f~~~~p  148 (191)
                      ....|.|+|.+|++|+.++.              .+.+||||++.+. +    ...+|++++++.||.|||.|.|.+...
T Consensus        12 ~~~~L~V~vi~a~~L~~~d~--------------~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~   77 (135)
T cd08410          12 SAGRLNVDIIRAKQLLQTDM--------------SQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQE   77 (135)
T ss_pred             CCCeEEEEEEEecCCCcccC--------------CCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHH
Confidence            34689999999999998874              3578999999973 2    257899999999999999999997444


Q ss_pred             CCCc-eEEEEEEECCCCC-CceEEEEEeecc
Q psy13645        149 PLCS-RIKIQLRDNDPVN-NTVIGTHYIDLK  177 (191)
Q Consensus       149 ~~~~-~l~i~v~d~d~~~-d~~iG~~~l~l~  177 (191)
                      .+.. .|.|+|||++..+ +++||++.+...
T Consensus        78 ~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~  108 (135)
T cd08410          78 ELENVSLVFTVYGHNVKSSNDFIGRIVIGQY  108 (135)
T ss_pred             HhCCCEEEEEEEeCCCCCCCcEEEEEEEcCc
Confidence            4443 5999999999887 999999886643

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.69  E-value=2.2e-16  Score=111.97  Aligned_cols=101  Identities=20%  Similarity=0.300  Sum_probs=80.6

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC---eeeeeeeecCCCCCccccEEEEE-eeCCC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG---LTGKTSVKKNSYNPVWNEQIIFS-EMFPP  149 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~~~nP~wne~~~f~-~~~p~  149 (191)
                      ....|.|+|.+|++|+.++.              .+..||||++.+.+   .+.+|+++++ .||+|||.|.|+ +....
T Consensus        14 ~~~~L~V~Vi~a~nL~~~~~--------------~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~   78 (124)
T cd08389          14 SARKLTVTVIRAQDIPTKDR--------------GGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEE   78 (124)
T ss_pred             CCCEEEEEEEEecCCCchhc--------------CCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHH
Confidence            34689999999999998773              46689999987744   3789999887 999999999998 43222


Q ss_pred             CC-ceEEEEEEECCCCC-CceEEEEEeeccccccCCC-CCccc
Q psy13645        150 LC-SRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDY  189 (191)
Q Consensus       150 ~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p  189 (191)
                      +. ..|.|+|||++..+ +++||++.++|+.+..++. .-|++
T Consensus        79 l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~  121 (124)
T cd08389          79 LNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLT  121 (124)
T ss_pred             hccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEe
Confidence            22 45999999999888 9999999999999965433 45654

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.68  E-value=5.7e-16  Score=109.71  Aligned_cols=89  Identities=28%  Similarity=0.412  Sum_probs=76.6

Q ss_pred             EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEEC-CeeeeeeeecCCCCCccccEEEEEeeCCCCCceEEE
Q psy13645         78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFA-GLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKI  156 (191)
Q Consensus        78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~-~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i  156 (191)
                      |+|+|.+|++|+.++.              .+..|||+++.+. ....+|++++++.||.|||.|.|.+.  . ...|.|
T Consensus         2 l~v~v~~A~~L~~~~~--------------~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~--~-~~~l~i   64 (123)
T cd08382           2 VRLTVLCADGLAKRDL--------------FRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVG--P-SSIITI   64 (123)
T ss_pred             eEEEEEEecCCCccCC--------------CCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeC--C-CCEEEE
Confidence            7899999999998773              3678999999997 45889999999999999999999974  2 567999


Q ss_pred             EEEECCCCC---CceEEEEEeeccccccCC
Q psy13645        157 QLRDNDPVN---NTVIGTHYIDLKNISNDG  183 (191)
Q Consensus       157 ~v~d~d~~~---d~~iG~~~l~l~~i~~~~  183 (191)
                      +|||++..+   +++||++.++++++....
T Consensus        65 ~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~   94 (123)
T cd08382          65 QVFDQKKFKKKDQGFLGCVRIRANAVLPLK   94 (123)
T ss_pred             EEEECCCCCCCCCceEeEEEEEHHHccccC
Confidence            999998875   479999999999986543

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.68  E-value=1.5e-16  Score=114.47  Aligned_cols=91  Identities=27%  Similarity=0.463  Sum_probs=76.4

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEeeCC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSEMFP  148 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~~~p  148 (191)
                      ..+.|.|.|++|++|+.++.              .+.+||||++.+.+     ...+|++++++.||.|||.|.|.+...
T Consensus        13 ~~~~l~V~Vi~a~~L~~~d~--------------~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~   78 (136)
T cd08402          13 TAGKLTVVILEAKNLKKMDV--------------GGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFE   78 (136)
T ss_pred             CCCeEEEEEEEeeCCCcccC--------------CCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHH
Confidence            45789999999999998774              36789999999853     267899999999999999999997543


Q ss_pred             CCC-ceEEEEEEECCCCC-CceEEEEEeeccc
Q psy13645        149 PLC-SRIKIQLRDNDPVN-NTVIGTHYIDLKN  178 (191)
Q Consensus       149 ~~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~  178 (191)
                      .+. ..|.|+|||++..+ +++||++.+++..
T Consensus        79 ~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~  110 (136)
T cd08402          79 QIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNA  110 (136)
T ss_pred             HhCCCEEEEEEEeCCCCCCCceeEEEEECCcc
Confidence            333 35999999999988 9999999999975

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.68  E-value=3.1e-16  Score=111.24  Aligned_cols=94  Identities=23%  Similarity=0.314  Sum_probs=79.7

Q ss_pred             EEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-eeeeeeeec-CCCCCccccEEEEEeeCCCC---C
Q psy13645         77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-LTGKTSVKK-NSYNPVWNEQIIFSEMFPPL---C  151 (191)
Q Consensus        77 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-~~~kT~~~~-~~~nP~wne~~~f~~~~p~~---~  151 (191)
                      +|+|+|.+|++|+..+.              .+..||||++.+++ .+.+|+++. ++.||.|||.|.|.+..+.+   .
T Consensus         1 ~L~V~V~sA~~L~~~~~--------------~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~   66 (125)
T cd04051           1 TLEITIISAEDLKNVNL--------------FGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGR   66 (125)
T ss_pred             CEEEEEEEcccCCCCCc--------------ccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCc
Confidence            47899999999997763              35689999999998 789999986 58999999999999755432   4


Q ss_pred             ceEEEEEEECCCCC-CceEEEEEeeccccccCCC
Q psy13645        152 SRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD  184 (191)
Q Consensus       152 ~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~  184 (191)
                      ..|.|+|||++..+ +++||++.++|.++..++.
T Consensus        67 ~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~  100 (125)
T cd04051          67 LALTIEVYCERPSLGDKLIGEVRVPLKDLLDGAS  100 (125)
T ss_pred             cEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccC
Confidence            56999999999876 9999999999999976554

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.68  E-value=1.1e-15  Score=109.43  Aligned_cols=107  Identities=21%  Similarity=0.299  Sum_probs=82.9

Q ss_pred             eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-eeeeeeecCCCCCccccEEEEEeeCCCCCceE
Q psy13645         76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRI  154 (191)
Q Consensus        76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l  154 (191)
                      +.|+|+|++|++|+..+.....    .+.++..+..||||++.+++. ..+|++++++.||.|||+|.|.+.   ....|
T Consensus         4 g~l~V~v~~a~~L~~~d~~~~~----~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~---~~~~l   76 (132)
T cd04014           4 GTLKIKICEAVDLKPTDWSTRH----AVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH---NGRNL   76 (132)
T ss_pred             eEEEEEEEEecCCCCCCchhhh----cccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC---CCCEE
Confidence            6799999999999877741000    000011357899999999987 469999999999999999999974   23569


Q ss_pred             EEEEEECCCCC-CceEEEEEeeccccccC---CCCCccc
Q psy13645        155 KIQLRDNDPVN-NTVIGTHYIDLKNISND---GDKGKDY  189 (191)
Q Consensus       155 ~i~v~d~d~~~-d~~iG~~~l~l~~i~~~---~~~g~~p  189 (191)
                      .|+|||++..+ ++++|++.++|+++...   ..+.|+|
T Consensus        77 ~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~  115 (132)
T cd04014          77 ELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVD  115 (132)
T ss_pred             EEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEE
Confidence            99999998877 89999999999998863   2256665

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.67  E-value=1.5e-16  Score=114.28  Aligned_cols=90  Identities=33%  Similarity=0.480  Sum_probs=75.0

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEeeCC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSEMFP  148 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~~~p  148 (191)
                      ....|+|+|++|++|+.++.              .+..||||++.+..     .+.+|++++++.||.|||.|.|.+...
T Consensus        12 ~~~~L~V~v~~A~~L~~~d~--------------~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~   77 (134)
T cd08403          12 TAGRLTLTIIKARNLKAMDI--------------TGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPE   77 (134)
T ss_pred             CCCEEEEEEEEeeCCCcccc--------------CCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHH
Confidence            45789999999999998874              36689999999842     267899999999999999999986433


Q ss_pred             CCC-ceEEEEEEECCCCC-CceEEEEEeecc
Q psy13645        149 PLC-SRIKIQLRDNDPVN-NTVIGTHYIDLK  177 (191)
Q Consensus       149 ~~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~  177 (191)
                      ... ..|.|+|||++..+ +++||.+.+++.
T Consensus        78 ~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~  108 (134)
T cd08403          78 NVDNVSLIIAVVDYDRVGHNELIGVCRVGPN  108 (134)
T ss_pred             HhCCCEEEEEEEECCCCCCCceeEEEEECCC
Confidence            233 35999999999988 999999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.67  E-value=7.1e-16  Score=109.73  Aligned_cols=87  Identities=30%  Similarity=0.496  Sum_probs=74.7

Q ss_pred             EEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCC-CCceEEEEEEE
Q psy13645         82 IYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPP-LCSRIKIQLRD  160 (191)
Q Consensus        82 i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~-~~~~l~i~v~d  160 (191)
                      |.+|++|+. .               .+..||||++.+.+.+.+|++++++.||+|||+|.|.+..+. ....|.|+|||
T Consensus         2 vi~a~~L~~-~---------------~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d   65 (127)
T cd08373           2 VVSLKNLPG-L---------------KGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKD   65 (127)
T ss_pred             eEEeeCCcc-c---------------CCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEE
Confidence            678899986 2               356899999999999999999999999999999999986542 34569999999


Q ss_pred             CCCCC-CceEEEEEeeccccccCCC
Q psy13645        161 NDPVN-NTVIGTHYIDLKNISNDGD  184 (191)
Q Consensus       161 ~d~~~-d~~iG~~~l~l~~i~~~~~  184 (191)
                      ++..+ +++||++.++++++..++.
T Consensus        66 ~~~~~~d~~iG~~~~~l~~l~~~~~   90 (127)
T cd08373          66 YEKVGRNRLIGSATVSLQDLVSEGL   90 (127)
T ss_pred             CCCCCCCceEEEEEEEhhHcccCCc
Confidence            99887 8999999999999876544

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.66  E-value=2e-16  Score=114.15  Aligned_cols=93  Identities=15%  Similarity=0.349  Sum_probs=77.0

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC---e---eeeeeeecCCCCCccccEEEEEeeC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG---L---TGKTSVKKNSYNPVWNEQIIFSEMF  147 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---~---~~kT~~~~~~~nP~wne~~~f~~~~  147 (191)
                      ...+|.|+|.+|++|+.++.              .+..||||++.+.+   .   +.+|++++++.||+|||.|.|.+..
T Consensus        13 ~~~~L~V~VikarnL~~~~~--------------~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~   78 (138)
T cd08408          13 LTGRLSVEVIKGSNFKNLAM--------------NKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVAL   78 (138)
T ss_pred             CCCeEEEEEEEecCCCcccc--------------CCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCH
Confidence            45789999999999998774              46789999999853   1   5699999999999999999999743


Q ss_pred             CCCC-ceEEEEEEECCCCC-CceEEEEEeeccccc
Q psy13645        148 PPLC-SRIKIQLRDNDPVN-NTVIGTHYIDLKNIS  180 (191)
Q Consensus       148 p~~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~  180 (191)
                      ..+. ..|.|+|||++..+ +++||++.+++....
T Consensus        79 ~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~  113 (138)
T cd08408          79 FQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSG  113 (138)
T ss_pred             HHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCC
Confidence            2332 35999999999887 999999999887543

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>PLN02223 phosphoinositide phospholipase C

Probab=99.66  E-value=1e-15  Score=129.95  Aligned_cols=133  Identities=24%  Similarity=0.393  Sum_probs=97.1

Q ss_pred             CCCCCCccEEEEeEEEEEcCCCCCCCCCCCCCCchhhhcccccCCCCCccccceEEEEEEEEecCCCC-CChHHHHhhhh
Q psy13645         23 DDIAGGPKGYLKCDISVIGKGDTVKIPQKSEKDEDDIEANLLLPEGVPLERQHARFIIRIYRADGLPK-MNSSLVANVKK  101 (191)
Q Consensus        23 ~~~~~~~~G~lk~s~~v~~~gd~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~L~v~i~~a~~L~~-~~~~~~~~~~~  101 (191)
                      ..-.+|-+||++..-+.+..+..-                .+.|..-+.  ....|.|+|++|++++. ....       
T Consensus       374 ~F~~NG~CGYVLKP~~Lr~~~~~~----------------~FdP~~~~~--~~~~L~V~Visgq~~~~~~~k~-------  428 (537)
T PLN02223        374 MFRANGGCGYVKKPDFLLNAGPSG----------------VFYPTENPV--VVKILKVKIYMGDGWIVDFKKR-------  428 (537)
T ss_pred             hhccCCCCCceECChhhccCCccc----------------ccCCCCCcc--cceEEEEEEEEcccccCCcccc-------
Confidence            334478889988776665544321                011111011  24679999999999862 1100       


Q ss_pred             hhcCCCCCccCcEEEEEECCe-----eeeeeeecCCCCCccccEEEEEeeCCCCCceEEEEEEECCCCC-CceEEEEEee
Q psy13645        102 AFTGETKDLVDPYVQVSFAGL-----TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVN-NTVIGTHYID  175 (191)
Q Consensus       102 ~~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i~v~d~d~~~-d~~iG~~~l~  175 (191)
                         .......||||+|.+.|.     +.+|++..|++||+|||+|.|++.+|+++- |+|+|+|+|..+ ++++|+..+|
T Consensus       429 ---~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAl-Lrf~V~D~D~~~~ddfiGQ~~LP  504 (537)
T PLN02223        429 ---IGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLAL-ISFEVYDYEVSTADAFCGQTCLP  504 (537)
T ss_pred             ---cCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceE-EEEEEEecCCCCCCcEEEEEecc
Confidence               011345899999999875     567887778999999999999999999886 999999999877 9999999999


Q ss_pred             ccccccCCC
Q psy13645        176 LKNISNDGD  184 (191)
Q Consensus       176 l~~i~~~~~  184 (191)
                      ++.|+.|-+
T Consensus       505 v~~Lr~GyR  513 (537)
T PLN02223        505 VSELIEGIR  513 (537)
T ss_pred             hHHhcCCce
Confidence            999988754

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.66  E-value=5e-16  Score=111.82  Aligned_cols=92  Identities=33%  Similarity=0.504  Sum_probs=76.3

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEEC--Ce---eeeeeeecCCCCCccccEEEEEeeCC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFA--GL---TGKTSVKKNSYNPVWNEQIIFSEMFP  148 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~~---~~kT~~~~~~~nP~wne~~~f~~~~p  148 (191)
                      ....|.|+|.+|++|+.++.              .+..||||++.+.  +.   +.+|++++++.||.|||.|.|.+...
T Consensus        13 ~~~~L~v~vi~a~~L~~~~~--------------~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~   78 (136)
T cd08405          13 TANRITVNIIKARNLKAMDI--------------NGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLE   78 (136)
T ss_pred             CCCeEEEEEEEeeCCCcccc--------------CCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHH
Confidence            34689999999999998763              3668999999983  22   57899999999999999999986432


Q ss_pred             CC-CceEEEEEEECCCCC-CceEEEEEeecccc
Q psy13645        149 PL-CSRIKIQLRDNDPVN-NTVIGTHYIDLKNI  179 (191)
Q Consensus       149 ~~-~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i  179 (191)
                      .. ...|.|+|||++..+ +++||++.+++.+.
T Consensus        79 ~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~  111 (136)
T cd08405          79 RLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG  111 (136)
T ss_pred             HhCCCEEEEEEEECCCCCCCcEeEEEEECCccC
Confidence            33 246999999999988 99999999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.66  E-value=1.1e-15  Score=106.72  Aligned_cols=91  Identities=26%  Similarity=0.486  Sum_probs=77.3

Q ss_pred             EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-eeeeeeecCCCCCccccEEEEEeeCCCCCceEEE
Q psy13645         78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKI  156 (191)
Q Consensus        78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i  156 (191)
                      |+|+|++|++|+.++.              .+..||||++.+.+. ..+|+++.++.+|.|||+|.|.+..+ ....+.|
T Consensus         1 l~v~vi~a~~L~~~~~--------------~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~-~~~~l~~   65 (115)
T cd04040           1 LTVDVISAENLPSADR--------------NGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSR-VRAVLKV   65 (115)
T ss_pred             CEEEEEeeeCCCCCCC--------------CCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccC-CCCEEEE
Confidence            5789999999998763              356899999999775 57999999999999999999997543 3456999


Q ss_pred             EEEECCCCC-CceEEEEEeeccccccCC
Q psy13645        157 QLRDNDPVN-NTVIGTHYIDLKNISNDG  183 (191)
Q Consensus       157 ~v~d~d~~~-d~~iG~~~l~l~~i~~~~  183 (191)
                      +|||++..+ +++||++.+++.++..+.
T Consensus        66 ~v~d~~~~~~~~~iG~~~~~l~~l~~~~   93 (115)
T cd04040          66 EVYDWDRGGKDDLLGSAYIDLSDLEPEE   93 (115)
T ss_pred             EEEeCCCCCCCCceEEEEEEHHHcCCCC
Confidence            999999887 999999999999987653

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.65  E-value=1.4e-15  Score=107.24  Aligned_cols=87  Identities=21%  Similarity=0.303  Sum_probs=72.9

Q ss_pred             EEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-------eeeeeeecCCCCCccccEEEEEeeCCCCCceE
Q psy13645         82 IYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-------TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRI  154 (191)
Q Consensus        82 i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-------~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l  154 (191)
                      .++|++|+.++.              .+.+||||++.+.+.       ..+|++++++.||.|||.|.|.+..+. ...|
T Consensus         6 ~i~a~~L~~~d~--------------~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~-~~~l   70 (120)
T cd04048           6 SISCRNLLDKDV--------------LSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE-VQKL   70 (120)
T ss_pred             EEEccCCCCCCC--------------CCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEe-eeEE
Confidence            478899998774              366899999999765       489999999999999999999865433 3459


Q ss_pred             EEEEEECCC----CC-CceEEEEEeeccccccCC
Q psy13645        155 KIQLRDNDP----VN-NTVIGTHYIDLKNISNDG  183 (191)
Q Consensus       155 ~i~v~d~d~----~~-d~~iG~~~l~l~~i~~~~  183 (191)
                      .|+|||++.    .+ +++||++.+++++|..+.
T Consensus        71 ~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~~  104 (120)
T cd04048          71 RFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSSP  104 (120)
T ss_pred             EEEEEEecCCcCCCCCCcEEEEEEEEHHHHhcCC
Confidence            999999996    66 999999999999997653

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>PLN03008 Phospholipase D delta

Probab=99.64  E-value=1.4e-15  Score=134.09  Aligned_cols=113  Identities=28%  Similarity=0.485  Sum_probs=89.8

Q ss_pred             ceEEEEEEEEecCCCCCChHHHHhhhhhhc-----C------------------------CCCCccCcEEEEEECCe-ee
Q psy13645         75 HARFIIRIYRADGLPKMNSSLVANVKKAFT-----G------------------------ETKDLVDPYVQVSFAGL-TG  124 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~-----~------------------------~~~~~~dpyv~v~~~~~-~~  124 (191)
                      .+.|.++|++|++||.||. +.+++.+.|.     +                        ...+.+||||+|.+++. ..
T Consensus        13 hg~l~~~i~ea~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~   91 (868)
T PLN03008         13 HGDLDLKIVKARRLPNMDM-FSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLA   91 (868)
T ss_pred             ecccEEEEEEcccCCchhH-HHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCccee
Confidence            6789999999999999883 2222322221     1                        01356799999999877 67


Q ss_pred             eeeeecCCCCCccccEEEEEeeCCCCCceEEEEEEECCCCCCceEEEEEeeccccccCCC-CCcccc
Q psy13645        125 KTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGD-KGKDYT  190 (191)
Q Consensus       125 kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i~v~d~d~~~d~~iG~~~l~l~~i~~~~~-~g~~p~  190 (191)
                      +|++++++.||+|||+|.|.+..+  ...|.|+|||+|.+++++||++.+||+++..+.. ++|+|.
T Consensus        92 RTrVi~n~~NPvWNE~F~f~vah~--~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~L  156 (868)
T PLN03008         92 RTRVLKNSQEPLWDEKFNISIAHP--FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPV  156 (868)
T ss_pred             eEEeCCCCCCCCcceeEEEEecCC--CceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEc
Confidence            999999999999999999997543  4579999999999998899999999999988765 677763

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.62  E-value=5.8e-15  Score=102.78  Aligned_cols=79  Identities=19%  Similarity=0.351  Sum_probs=65.5

Q ss_pred             EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEeeCCCCCc
Q psy13645         78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSEMFPPLCS  152 (191)
Q Consensus        78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~  152 (191)
                      |.|.|.+|++|+                   +.+||||++.+.+     .+.+|++++++.||+|||+|.|++.  . ..
T Consensus         1 L~V~V~~A~~L~-------------------~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~--~-s~   58 (118)
T cd08686           1 LNVIVHSAQGFK-------------------QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE--G-SQ   58 (118)
T ss_pred             CEEEEEeCCCCC-------------------CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC--C-CC
Confidence            578999999996                   3379999998854     3699999999999999999999974  3 45


Q ss_pred             eEEEEEEEC-------CCCC-CceEEEEEeeccc
Q psy13645        153 RIKIQLRDN-------DPVN-NTVIGTHYIDLKN  178 (191)
Q Consensus       153 ~l~i~v~d~-------d~~~-d~~iG~~~l~l~~  178 (191)
                      .|.+.|||+       |..+ |+++|.+.+.|..
T Consensus        59 ~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld~   92 (118)
T cd08686          59 TLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLDP   92 (118)
T ss_pred             EEEEEEEEcccccccccccCcccEEEEEEEEECH
Confidence            799999998       3456 9999888877653

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.62  E-value=2.4e-15  Score=108.43  Aligned_cols=92  Identities=22%  Similarity=0.308  Sum_probs=75.3

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEeeCC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSEMFP  148 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~~~p  148 (191)
                      ...+|.|.|.+|+||+.++               .+..||||++.+.+     .+.+|++++++.||+|||.|.|.+...
T Consensus        13 ~~~~L~V~V~~a~nL~~~~---------------~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~   77 (137)
T cd08409          13 TLNRLTVVVLRARGLRQLD---------------HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSR   77 (137)
T ss_pred             CCCeEEEEEEEecCCCccc---------------CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHH
Confidence            3568999999999998776               25589999999864     266899999999999999999997433


Q ss_pred             CCC-ceEEEEEEECCCCC-CceEEEEEeeccccc
Q psy13645        149 PLC-SRIKIQLRDNDPVN-NTVIGTHYIDLKNIS  180 (191)
Q Consensus       149 ~~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~  180 (191)
                      .+. ..|.|+|||.+..+ +++||++.+......
T Consensus        78 ~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~  111 (137)
T cd08409          78 QLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYA  111 (137)
T ss_pred             HhCccEEEEEEEeCCCCCCcceEEEEEECCcccC
Confidence            344 46999999999877 999999999865443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.62  E-value=1.6e-15  Score=108.62  Aligned_cols=99  Identities=33%  Similarity=0.458  Sum_probs=79.6

Q ss_pred             ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-----eeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645         75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-----TGKTSVKKNSYNPVWNEQIIFSEMFPP  149 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~~~nP~wne~~~f~~~~p~  149 (191)
                      ...|.|+|++|++|+.++.              .+..||||++.+.+.     ..+|++++++.||.|||+|.|.+..+.
T Consensus        13 ~~~L~V~v~~a~~L~~~~~--------------~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~   78 (134)
T cd00276          13 AERLTVVVLKARNLPPSDG--------------KGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQ   78 (134)
T ss_pred             CCEEEEEEEEeeCCCCccC--------------CCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHH
Confidence            4689999999999998763              356899999998653     668999999999999999999975433


Q ss_pred             C-CceEEEEEEECCCCC-CceEEEEEeeccccccCCCCCcc
Q psy13645        150 L-CSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKGKD  188 (191)
Q Consensus       150 ~-~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~~g~~  188 (191)
                      + ...|.|+|||.+..+ +++||.+.+++++ ...+.+.|+
T Consensus        79 l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~-~~~~~~~W~  118 (134)
T cd00276          79 LEEVSLVITVVDKDSVGRNEVIGQVVLGPDS-GGEELEHWN  118 (134)
T ss_pred             hCCcEEEEEEEecCCCCCCceeEEEEECCCC-CCcHHHHHH
Confidence            2 346999999999876 9999999999999 333334443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.62  E-value=9.8e-15  Score=105.82  Aligned_cols=96  Identities=23%  Similarity=0.356  Sum_probs=79.5

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCee-eeeeeecCCCCCccccEEEEEeeCCCCCc
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLT-GKTSVKKNSYNPVWNEQIIFSEMFPPLCS  152 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~-~kT~~~~~~~nP~wne~~~f~~~~p~~~~  152 (191)
                      ....|.|.|++|++||.++                   +|||++.+++.. .+|+++.++.||.|+|+|.|... |. ..
T Consensus         9 ~~~sL~v~V~EAk~Lp~~~-------------------~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~-~~-~~   67 (146)
T cd04013           9 TENSLKLWIIEAKGLPPKK-------------------RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNL-PP-VS   67 (146)
T ss_pred             EEEEEEEEEEEccCCCCcC-------------------CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCC-Cc-cc
Confidence            4567999999999998654                   799999999995 69999999999999999999853 33 35


Q ss_pred             eEEEEEEECCC-C----CCceEEEEEeeccccccCCC-CCcccc
Q psy13645        153 RIKIQLRDNDP-V----NNTVIGTHYIDLKNISNDGD-KGKDYT  190 (191)
Q Consensus       153 ~l~i~v~d~d~-~----~d~~iG~~~l~l~~i~~~~~-~g~~p~  190 (191)
                      .|.|.||+.+. .    ++++||.+.|+++++..+.. ++|+|.
T Consensus        68 ~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl  111 (146)
T cd04013          68 VITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPV  111 (146)
T ss_pred             EEEEEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEe
Confidence            59999985432 2    37899999999999987555 789885

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>PLN02230 phosphoinositide phospholipase C 4

Probab=99.60  E-value=5.3e-15  Score=127.64  Aligned_cols=137  Identities=19%  Similarity=0.320  Sum_probs=98.3

Q ss_pred             CCCCCCCccEEEEeEEEEEcCCCCCCCCCCCCCCchhhhcccccCCCCCccccceEEEEEEEEecCCCCCChHHHHhhhh
Q psy13645         22 PDDIAGGPKGYLKCDISVIGKGDTVKIPQKSEKDEDDIEANLLLPEGVPLERQHARFIIRIYRADGLPKMNSSLVANVKK  101 (191)
Q Consensus        22 p~~~~~~~~G~lk~s~~v~~~gd~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~L~v~i~~a~~L~~~~~~~~~~~~~  101 (191)
                      -....+|.+|||+..-+.+..+.....               +.|..-..  ...+|.|+|+.+++++.....   .   
T Consensus       432 G~F~~NG~CGYVLKP~~Lr~~~~~~~~---------------fdP~~~~~--~~~~L~V~VisGq~~~l~~~k---~---  488 (598)
T PLN02230        432 GMFRANGGCGYVKKPDFLMDAGPNGQD---------------FYPKDNSC--PKKTLKVKVCMGDGWLLDFKK---T---  488 (598)
T ss_pred             chhccCCCCCceECCHHhcCCCccccc---------------cCCCcCCC--cCcEEEEEEEEccCccCCCcc---c---
Confidence            344457899999887666654321100               11111001  235799999999987522110   0   


Q ss_pred             hhcCCCCCccCcEEEEEECCe-----eeeeeeecCCCCCccccEEEEEeeCCCCCceEEEEEEECCCCC-CceEEEEEee
Q psy13645        102 AFTGETKDLVDPYVQVSFAGL-----TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVN-NTVIGTHYID  175 (191)
Q Consensus       102 ~~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i~v~d~d~~~-d~~iG~~~l~  175 (191)
                        -.+....+||||+|.+.|.     +.+|++..+++||.|||+|.|++..|+++- |+|+|+|+|... ++++|+..+|
T Consensus       489 --~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAl-lRf~V~d~d~~~~ddfiGQ~~lP  565 (598)
T PLN02230        489 --HFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELAL-LRVEVHEHDINEKDDFGGQTCLP  565 (598)
T ss_pred             --cCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeE-EEEEEEECCCCCCCCEEEEEEcc
Confidence              0012345799999999874     678998889999999999999999999886 999999999876 9999999999


Q ss_pred             ccccccCCC
Q psy13645        176 LKNISNDGD  184 (191)
Q Consensus       176 l~~i~~~~~  184 (191)
                      +..|+.|-+
T Consensus       566 v~~Lr~GyR  574 (598)
T PLN02230        566 VSEIRQGIH  574 (598)
T ss_pred             hHHhhCccc
Confidence            999987654

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.60  E-value=1.3e-14  Score=102.95  Aligned_cols=88  Identities=26%  Similarity=0.440  Sum_probs=75.0

Q ss_pred             EEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-eeeeeeecCCCCCccccEEEEEeeCCCCCceEE
Q psy13645         77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIK  155 (191)
Q Consensus        77 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~  155 (191)
                      +|.|+|.+|+ |...+.              .+..||||++.+++. ..+|++++++.+|.|||.|.|.+.   ....|.
T Consensus         3 ~L~V~i~~a~-l~~~~~--------------~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~---~~~~l~   64 (125)
T cd04021           3 QLQITVESAK-LKSNSK--------------SFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT---PQSTLE   64 (125)
T ss_pred             eEEEEEEeeE-CCCCCc--------------CCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC---CCCEEE
Confidence            6899999998 544332              356899999999988 899999999999999999999863   235699


Q ss_pred             EEEEECCCCC-CceEEEEEeeccccccC
Q psy13645        156 IQLRDNDPVN-NTVIGTHYIDLKNISND  182 (191)
Q Consensus       156 i~v~d~d~~~-d~~iG~~~l~l~~i~~~  182 (191)
                      |+|||++..+ +++||++.++|.++...
T Consensus        65 ~~V~d~~~~~~~~~iG~~~i~l~~l~~~   92 (125)
T cd04021          65 FKVWSHHTLKADVLLGEASLDLSDILKN   92 (125)
T ss_pred             EEEEeCCCCCCCcEEEEEEEEHHHhHhh
Confidence            9999999987 99999999999998654

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.60  E-value=1.5e-14  Score=102.30  Aligned_cols=97  Identities=24%  Similarity=0.429  Sum_probs=78.5

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEeeCC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSEMFP  148 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~~~p  148 (191)
                      ....|.|+|.+|++|+..+.              .+..||||++.+.+     ...+|++++++.||.|||.|.|....+
T Consensus        13 ~~~~L~V~v~~a~~L~~~~~--------------~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~   78 (123)
T cd04035          13 ANSALHCTIIRAKGLKAMDA--------------NGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITE   78 (123)
T ss_pred             CCCEEEEEEEEeeCCCCCCC--------------CCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCH
Confidence            34689999999999997763              35689999999842     278999999999999999999963222


Q ss_pred             -CC-CceEEEEEEECCCCCCceEEEEEeeccccccCCC
Q psy13645        149 -PL-CSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGD  184 (191)
Q Consensus       149 -~~-~~~l~i~v~d~d~~~d~~iG~~~l~l~~i~~~~~  184 (191)
                       .. ...|.|+|||++..++++||++.++++++...+.
T Consensus        79 ~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~  116 (123)
T cd04035          79 EDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQT  116 (123)
T ss_pred             HHhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcc
Confidence             22 2469999999987678899999999999976543

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.60  E-value=1.6e-14  Score=102.60  Aligned_cols=94  Identities=31%  Similarity=0.530  Sum_probs=76.8

Q ss_pred             eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEEC------CeeeeeeeecCCC-CCccccEEEEEeeCC
Q psy13645         76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFA------GLTGKTSVKKNSY-NPVWNEQIIFSEMFP  148 (191)
Q Consensus        76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~------~~~~kT~~~~~~~-nP~wne~~~f~~~~p  148 (191)
                      ..|+|+|++|++|+.++..            ..+..||||++++.      ..+.+|+++.++. ||.|||+|.|.+..+
T Consensus         2 ~~l~v~vi~a~~L~~~~~~------------~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~   69 (128)
T cd00275           2 LTLTIKIISGQQLPKPKGD------------KGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVP   69 (128)
T ss_pred             eEEEEEEEeeecCCCCCCC------------CCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCC
Confidence            4789999999999977620            13568999999984      3468999988765 999999999998766


Q ss_pred             CCCceEEEEEEECCCCCCceEEEEEeeccccccC
Q psy13645        149 PLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISND  182 (191)
Q Consensus       149 ~~~~~l~i~v~d~d~~~d~~iG~~~l~l~~i~~~  182 (191)
                      .. ..|.|+|||++..++++||++.++++++..+
T Consensus        70 ~~-~~l~~~V~d~~~~~~~~iG~~~~~l~~l~~g  102 (128)
T cd00275          70 EL-AFLRFVVYDEDSGDDDFLGQACLPLDSLRQG  102 (128)
T ss_pred             Ce-EEEEEEEEeCCCCCCcEeEEEEEEhHHhcCc
Confidence            53 3599999999876789999999999998543

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>KOG0169|consensus

Probab=99.60  E-value=3e-15  Score=129.67  Aligned_cols=127  Identities=26%  Similarity=0.477  Sum_probs=96.5

Q ss_pred             CCCccEEEEeEEEEEcCCCCCCCCCCCCCCchhhhcccccCCC-CCccccceEEEEEEEEecCCCC-CChHHHHhhhhhh
Q psy13645         26 AGGPKGYLKCDISVIGKGDTVKIPQKSEKDEDDIEANLLLPEG-VPLERQHARFIIRIYRADGLPK-MNSSLVANVKKAF  103 (191)
Q Consensus        26 ~~~~~G~lk~s~~v~~~gd~~~~~~~~~~~~~~i~~~~l~~~~-~~~~~~~~~L~v~i~~a~~L~~-~~~~~~~~~~~~~  103 (191)
                      .+|.||||+..-+.+-.++.                  +-|.. .+.  ...+|.|+|+++++++. .+..         
T Consensus       585 ~NGgCGYVlKP~~L~~~~~~------------------F~P~~~~~~--~~~tL~IkI~sGq~~~~~~~~~---------  635 (746)
T KOG0169|consen  585 ANGGCGYVLKPDFLLDSGST------------------FDPKSNLPP--VKKTLKIKIISGQGWLPDFGKT---------  635 (746)
T ss_pred             cCCCccceECcHHHcCCCCc------------------cCCCCCCCC--CCceeEEEEEecCcccCCCCCC---------
Confidence            46889998876555543333                  22211 111  12389999999997653 3321         


Q ss_pred             cCCCCCccCcEEEEEECCe-----eeeeeee-cCCCCCccccEEEEEeeCCCCCceEEEEEEECCCCC-CceEEEEEeec
Q psy13645        104 TGETKDLVDPYVQVSFAGL-----TGKTSVK-KNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVN-NTVIGTHYIDL  176 (191)
Q Consensus       104 ~~~~~~~~dpyv~v~~~~~-----~~kT~~~-~~~~nP~wne~~~f~~~~p~~~~~l~i~v~d~d~~~-d~~iG~~~l~l  176 (191)
                        .....+||||.|++.|.     +.+|+++ .|+.||.|+|+|.|++..|+++- |+|.|+|+|..+ |+|+|+.++|+
T Consensus       636 --~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAl-iRF~V~d~d~~~~ddF~GQ~tlP~  712 (746)
T KOG0169|consen  636 --KFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELAL-IRFEVHDYDYIGKDDFIGQTTLPV  712 (746)
T ss_pred             --cccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeE-EEEEEEecCCCCcccccceeeccH
Confidence              11367899999999885     7899955 56999999999999999999987 999999999998 99999999999


Q ss_pred             cccccCCC
Q psy13645        177 KNISNDGD  184 (191)
Q Consensus       177 ~~i~~~~~  184 (191)
                      ++|..|-+
T Consensus       713 ~~L~~GyR  720 (746)
T KOG0169|consen  713 SELRQGYR  720 (746)
T ss_pred             HHhhCcee
Confidence            99987644

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.59  E-value=1.3e-14  Score=100.56  Aligned_cols=88  Identities=24%  Similarity=0.318  Sum_probs=71.3

Q ss_pred             EEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe------eeeeeeecCCCCCccccEEEEEeeC---CCC
Q psy13645         80 IRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL------TGKTSVKKNSYNPVWNEQIIFSEMF---PPL  150 (191)
Q Consensus        80 v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~------~~kT~~~~~~~nP~wne~~~f~~~~---p~~  150 (191)
                      +..++|++|+.++.              .+.+|||+++.+.+.      ..+|++++++.||.|| +|.++...   ...
T Consensus         4 ~~~i~a~~L~~~d~--------------~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~   68 (110)
T cd04047           4 ELQFSGKKLDKKDF--------------FGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDY   68 (110)
T ss_pred             EEEEEeCCCCCCCC--------------CCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCc
Confidence            34578999998874              357899999998653      5899999999999999 67777421   122


Q ss_pred             CceEEEEEEECCCCC-CceEEEEEeeccccccC
Q psy13645        151 CSRIKIQLRDNDPVN-NTVIGTHYIDLKNISND  182 (191)
Q Consensus       151 ~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~  182 (191)
                      ...|.|+|||++..+ +++||++.+++++|...
T Consensus        69 ~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~~~  101 (110)
T cd04047          69 DRPIKIEVYDYDSSGKHDLIGEFETTLDELLKS  101 (110)
T ss_pred             CCEEEEEEEEeCCCCCCcEEEEEEEEHHHHhcC
Confidence            456999999999987 99999999999998743

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.58  E-value=1.1e-14  Score=95.45  Aligned_cols=81  Identities=40%  Similarity=0.583  Sum_probs=71.2

Q ss_pred             EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC---eeeeeeeecCCCCCccccEEEEEeeCCCCCceE
Q psy13645         78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG---LTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRI  154 (191)
Q Consensus        78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l  154 (191)
                      |+|+|++|++|+..+.              .+..+||+++.+.+   ...+|++++++.+|.|||+|.|++..+.... |
T Consensus         1 L~v~I~~a~~L~~~~~--------------~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~-l   65 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDS--------------NGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDS-L   65 (85)
T ss_dssp             EEEEEEEEESSSSSST--------------TSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTE-E
T ss_pred             CEEEEEEEECCCCccc--------------CCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccc-e
Confidence            6899999999997653              46789999999988   5799999999999999999999976666555 9


Q ss_pred             EEEEEECCCCC-CceEEEEE
Q psy13645        155 KIQLRDNDPVN-NTVIGTHY  173 (191)
Q Consensus       155 ~i~v~d~d~~~-d~~iG~~~  173 (191)
                      .|+|||++..+ +++||++.
T Consensus        66 ~~~V~~~~~~~~~~~iG~~~   85 (85)
T PF00168_consen   66 SFEVWDKDSFGKDELIGEVK   85 (85)
T ss_dssp             EEEEEEETSSSSEEEEEEEE
T ss_pred             EEEEEECCCCCCCCEEEEEC
Confidence            99999999988 99999874

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.57  E-value=5.2e-14  Score=101.33  Aligned_cols=90  Identities=24%  Similarity=0.395  Sum_probs=73.7

Q ss_pred             EEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-------------eeeeeeeecCCCCCcc-ccEEE
Q psy13645         77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-------------LTGKTSVKKNSYNPVW-NEQII  142 (191)
Q Consensus        77 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-------------~~~kT~~~~~~~nP~w-ne~~~  142 (191)
                      .+.|.+++|++|+ ++.              .+.+||||++.+.+             +..+|++++++.||+| ||.|.
T Consensus         2 ~~~~~~~~A~~L~-~~~--------------fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~   66 (137)
T cd08691           2 SFSLSGLQARNLK-KGM--------------FFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFV   66 (137)
T ss_pred             EEEEEEEEeCCCC-Ccc--------------CCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEE
Confidence            4678999999998 552              35689999999853             3689999999999999 99999


Q ss_pred             EEeeCCCCCceEEEEEEECCCCC----CceEEEEEeeccccccCCC
Q psy13645        143 FSEMFPPLCSRIKIQLRDNDPVN----NTVIGTHYIDLKNISNDGD  184 (191)
Q Consensus       143 f~~~~p~~~~~l~i~v~d~d~~~----d~~iG~~~l~l~~i~~~~~  184 (191)
                      |.+.   ..+.|.|+|||++..+    +++||++.++++++..++.
T Consensus        67 f~v~---~~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~  109 (137)
T cd08691          67 FVGL---PTDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHA  109 (137)
T ss_pred             EEcC---CCCEEEEEEEecCCCCCccCCceEEEEEEEHHHhccccc
Confidence            9973   2356999999976432    6899999999999976643

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>PLN02952 phosphoinositide phospholipase C

Probab=99.57  E-value=2.7e-14  Score=123.47  Aligned_cols=136  Identities=21%  Similarity=0.310  Sum_probs=97.4

Q ss_pred             CCCCCCccEEEEeEEEEEcCCCCCCCCCCCCCCchhhhcccccCCCCCccccceEEEEEEEEecCCCCCChHHHHhhhhh
Q psy13645         23 DDIAGGPKGYLKCDISVIGKGDTVKIPQKSEKDEDDIEANLLLPEGVPLERQHARFIIRIYRADGLPKMNSSLVANVKKA  102 (191)
Q Consensus        23 ~~~~~~~~G~lk~s~~v~~~gd~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~L~v~i~~a~~L~~~~~~~~~~~~~~  102 (191)
                      ....+|.+|||+..-+.+..+.....               +.|..-..  ....|.|+|++|++++.....        
T Consensus       434 ~F~~NG~cGYVlKP~~lr~~~~~~~~---------------fdp~~~~~--~~~~L~V~VisGq~l~lp~~~--------  488 (599)
T PLN02952        434 MFRANGGCGYLKKPDFLMKKGFHDEV---------------FDPKKKLP--VKKTLKVKVYLGDGWRLDFSH--------  488 (599)
T ss_pred             hhccCCCCCceECCHHHcccCCcccc---------------cCCCCCCC--ccceEEEEEEECcccCCCCcc--------
Confidence            33347889999887666644321000               11111100  235799999999998632110        


Q ss_pred             hcCCCCCccCcEEEEEECCe-----eeeeeeecCCCCCccccEEEEEeeCCCCCceEEEEEEECCCCC-CceEEEEEeec
Q psy13645        103 FTGETKDLVDPYVQVSFAGL-----TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVN-NTVIGTHYIDL  176 (191)
Q Consensus       103 ~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i~v~d~d~~~-d~~iG~~~l~l  176 (191)
                      -..+....+||||+|.+.|.     +.+|+++.++.||+||++|.|++..|.++. |+|+|||+|..+ ++++|++.+|+
T Consensus       489 ~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAl-lrf~V~D~D~~~~ddfiGq~~lPv  567 (599)
T PLN02952        489 THFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELAL-LRIEVREYDMSEKDDFGGQTCLPV  567 (599)
T ss_pred             ccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccE-EEEEEEecCCCCCCCeEEEEEcch
Confidence            00011244699999999874     779999999999999999999999998775 999999999887 99999999999


Q ss_pred             cccccCCC
Q psy13645        177 KNISNDGD  184 (191)
Q Consensus       177 ~~i~~~~~  184 (191)
                      +.|..+-.
T Consensus       568 ~~Lr~GyR  575 (599)
T PLN02952        568 SELRPGIR  575 (599)
T ss_pred             hHhcCCce
Confidence            99987654

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.56  E-value=7.7e-14  Score=102.15  Aligned_cols=75  Identities=21%  Similarity=0.366  Sum_probs=61.5

Q ss_pred             CCccCcEEEEEE--C---CeeeeeeeecCCCCCccccEEEEEeeCCC------C-CceEEEEEEECCCC-C-CceEEEEE
Q psy13645        108 KDLVDPYVQVSF--A---GLTGKTSVKKNSYNPVWNEQIIFSEMFPP------L-CSRIKIQLRDNDPV-N-NTVIGTHY  173 (191)
Q Consensus       108 ~~~~dpyv~v~~--~---~~~~kT~~~~~~~nP~wne~~~f~~~~p~------~-~~~l~i~v~d~d~~-~-d~~iG~~~  173 (191)
                      .+.+||||++++  .   ..+.||+++++|.||+|||.|.|.+....      . ...|.|+|||.+.. + |++||++.
T Consensus        22 ~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~  101 (155)
T cd08690          22 PKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQ  101 (155)
T ss_pred             CCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEE
Confidence            466899999997  2   23899999999999999999999974331      1 23499999999875 4 99999999


Q ss_pred             eeccccccC
Q psy13645        174 IDLKNISND  182 (191)
Q Consensus       174 l~l~~i~~~  182 (191)
                      ++|+.+...
T Consensus       102 i~L~~l~~~  110 (155)
T cd08690         102 VKLEPLETK  110 (155)
T ss_pred             EEccccccc
Confidence            999998554

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>PLN02222 phosphoinositide phospholipase C 2

Probab=99.55  E-value=5.5e-14  Score=121.23  Aligned_cols=138  Identities=20%  Similarity=0.304  Sum_probs=98.8

Q ss_pred             ccCCCCCCCCccEEEEeEEEEEcCCCCCCCCCCCCCCchhhhcccccCCCCCccccceEEEEEEEEecCCC--CCChHHH
Q psy13645         19 LTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQKSEKDEDDIEANLLLPEGVPLERQHARFIIRIYRADGLP--KMNSSLV   96 (191)
Q Consensus        19 L~~p~~~~~~~~G~lk~s~~v~~~gd~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~L~v~i~~a~~L~--~~~~~~~   96 (191)
                      |.+-....+|.+|||+..-+.+..+....               .+.|..-..  ....|+|+|+.|++++  .....  
T Consensus       412 LN~G~F~~NG~cGYVLKP~~lr~~~~~~~---------------~fdp~~~~~--~~~~L~V~Visgq~~~l~~~~~~--  472 (581)
T PLN02222        412 LMQGMFRANGGCGYIKKPDLLLKSGSDSD---------------IFDPKATLP--VKTTLRVTIYMGEGWYFDFRHTH--  472 (581)
T ss_pred             hhcchhccCCCCceEECCHHhccCCcccc---------------ccCCCCCCC--ccceEEEEEEEcccccCCCCccc--
Confidence            33444445789999988766654432100               011111000  2357999999998854  21110  


Q ss_pred             HhhhhhhcCCCCCccCcEEEEEECCe-----eeeeeeecCCCCCccccEEEEEeeCCCCCceEEEEEEECCCCC-CceEE
Q psy13645         97 ANVKKAFTGETKDLVDPYVQVSFAGL-----TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVN-NTVIG  170 (191)
Q Consensus        97 ~~~~~~~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i~v~d~d~~~-d~~iG  170 (191)
                              .+....+||||+|.+.|.     +.+|+++.++.||.|||+|.|++..|+++- |+|.|+|+|..+ ++++|
T Consensus       473 --------~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAl-lRf~V~d~D~~~~ddfig  543 (581)
T PLN02222        473 --------FDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELAL-LRLEVHEYDMSEKDDFGG  543 (581)
T ss_pred             --------cCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeE-EEEEEEECCCCCCCcEEE
Confidence                    012346899999999764     679999999999999999999999999886 999999999877 99999


Q ss_pred             EEEeeccccccCCC
Q psy13645        171 THYIDLKNISNDGD  184 (191)
Q Consensus       171 ~~~l~l~~i~~~~~  184 (191)
                      +..+|++.|..|-+
T Consensus       544 q~~lPv~~Lr~GyR  557 (581)
T PLN02222        544 QTCLPVWELSQGIR  557 (581)
T ss_pred             EEEcchhhhhCccc
Confidence            99999999987654

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.54  E-value=1.8e-14  Score=137.21  Aligned_cols=99  Identities=16%  Similarity=0.351  Sum_probs=87.1

Q ss_pred             ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-eeeeeeecCCCCCccccEEEEEeeCCCCCce
Q psy13645         75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSR  153 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~  153 (191)
                      .+.|+|+|.+|++|. -+               .+..||||++.+++. +.||++++++.||+|||+|+|.+..|....+
T Consensus      1979 ~G~L~V~V~~a~nl~-~~---------------~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~ 2042 (2102)
T PLN03200       1979 PGSLTVTIKRGNNLK-QS---------------MGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQK 2042 (2102)
T ss_pred             CcceEEEEeeccccc-cc---------------cCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCc
Confidence            579999999999997 22               366899999999965 8899999999999999999999888887788


Q ss_pred             EEEEEEECCCCCCceEEEEEeeccccccCCC-CCccc
Q psy13645        154 IKIQLRDNDPVNNTVIGTHYIDLKNISNDGD-KGKDY  189 (191)
Q Consensus       154 l~i~v~d~d~~~d~~iG~~~l~l~~i~~~~~-~g~~p  189 (191)
                      |.|+|||+|..+++.+|.+.+++.++..++. .+|+|
T Consensus      2043 l~iev~d~d~f~kd~~G~~~i~l~~vv~~~~~~~~~~ 2079 (2102)
T PLN03200       2043 LHISCKSKNTFGKSSLGKVTIQIDRVVMEGTYSGEYS 2079 (2102)
T ss_pred             eEEEEEecCccCCCCCceEEEEHHHHhcCceeeeeee
Confidence            9999999999987799999999999986665 56655

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.51  E-value=7e-14  Score=97.22  Aligned_cols=81  Identities=25%  Similarity=0.386  Sum_probs=67.2

Q ss_pred             CCccCcEEEEEECCe-eeeeeeecCCCCCccccEEEEEeeCCCCCceEEEEEEECCCCCCceEEEEEeeccccccCCC--
Q psy13645        108 KDLVDPYVQVSFAGL-TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGD--  184 (191)
Q Consensus       108 ~~~~dpyv~v~~~~~-~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i~v~d~d~~~d~~iG~~~l~l~~i~~~~~--  184 (191)
                      .|.+||||++.+++. ..+|++++++.||.|||.|.|.+..+ ....|.|+|||++..++++||.+.++|+++...+.  
T Consensus        10 ~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~   88 (111)
T cd04052          10 TGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDR-RKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVG   88 (111)
T ss_pred             CCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCc-CCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhcc
Confidence            466899999999886 67999999999999999999997543 34569999999987778999999999999854322  


Q ss_pred             CCccc
Q psy13645        185 KGKDY  189 (191)
Q Consensus       185 ~g~~p  189 (191)
                      +.|+|
T Consensus        89 ~~w~~   93 (111)
T cd04052          89 QQWFP   93 (111)
T ss_pred             ceeEE
Confidence            56765

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>KOG1028|consensus

Probab=99.48  E-value=1.6e-13  Score=115.55  Aligned_cols=97  Identities=25%  Similarity=0.372  Sum_probs=82.8

Q ss_pred             ccceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe---eeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645         73 RQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL---TGKTSVKKNSYNPVWNEQIIFSEMFPP  149 (191)
Q Consensus        73 ~~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~---~~kT~~~~~~~nP~wne~~~f~~~~p~  149 (191)
                      .+...|.|+|.+|.+|+.++.              .+.+||||++++.+.   +.+|++.++++||.|||.|.|.+....
T Consensus       164 ~~~~~L~V~V~qa~~Lp~~d~--------------~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~  229 (421)
T KOG1028|consen  164 FELNLLTVRVIQAHDLPAKDR--------------GGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEE  229 (421)
T ss_pred             ccCCEEEEEEEEecCCCcccC--------------CCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHH
Confidence            356789999999999999883              367999999999875   899999999999999999999964332


Q ss_pred             CC-ceEEEEEEECCCCC-CceEEEEEeeccccccCC
Q psy13645        150 LC-SRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDG  183 (191)
Q Consensus       150 ~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~  183 (191)
                      +. ..|.++|||.|+++ +++||++.++|..+....
T Consensus       230 l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~  265 (421)
T KOG1028|consen  230 LSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLS  265 (421)
T ss_pred             hccCEEEEEEEecCCcccccEEEEEEecCccccccc
Confidence            33 46999999999998 999999999988875543

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.47  E-value=8.9e-13  Score=92.14  Aligned_cols=94  Identities=23%  Similarity=0.427  Sum_probs=69.5

Q ss_pred             EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-eeeeeeecCCCCCccccEEEEEeeCCCCC-ceEE
Q psy13645         78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-TGKTSVKKNSYNPVWNEQIIFSEMFPPLC-SRIK  155 (191)
Q Consensus        78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~~~nP~wne~~~f~~~~p~~~-~~l~  155 (191)
                      |+|+|++|++|+.+                 +.+||||.+.+.+. ..+|+++++ .||.|||+|.|.+...... ..|.
T Consensus         2 L~v~vi~a~~l~~~-----------------~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~   63 (117)
T cd08383           2 LRLRILEAKNLPSK-----------------GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLS   63 (117)
T ss_pred             eEEEEEEecCCCcC-----------------CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEE
Confidence            78999999999853                 34799999999986 579999988 9999999999997433222 3588


Q ss_pred             EEEEECCCCC-CceEEEEEeeccccccCCCCCcccc
Q psy13645        156 IQLRDNDPVN-NTVIGTHYIDLKNISNDGDKGKDYT  190 (191)
Q Consensus       156 i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~~g~~p~  190 (191)
                      |.+||.+... +..+|.+.+....+ .+..+.|++.
T Consensus        64 i~v~d~~~~~~~~~~g~v~l~~~~~-~~~~~~w~~L   98 (117)
T cd08383          64 FYNKDKRSKDRDIVIGKVALSKLDL-GQGKDEWFPL   98 (117)
T ss_pred             EEEEecccCCCeeEEEEEEecCcCC-CCcceeEEEC
Confidence            8889987665 66677665544333 2233677663

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>PLN02228 Phosphoinositide phospholipase C

Probab=99.46  E-value=4.9e-13  Score=115.13  Aligned_cols=98  Identities=19%  Similarity=0.402  Sum_probs=79.8

Q ss_pred             eEEEEEEEEecCCCC--CChHHHHhhhhhhcCCCCCccCcEEEEEECCe-----eeeeeeecCCCCCcc-ccEEEEEeeC
Q psy13645         76 ARFIIRIYRADGLPK--MNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-----TGKTSVKKNSYNPVW-NEQIIFSEMF  147 (191)
Q Consensus        76 ~~L~v~i~~a~~L~~--~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~~~nP~w-ne~~~f~~~~  147 (191)
                      ..|.|+|++|++|+.  ....          .+.....||||+|.+.|.     +.+|++++++.||.| |++|.|++..
T Consensus       431 ~~L~I~ViSGq~l~lp~~~~~----------~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~  500 (567)
T PLN02228        431 TTLKVKIYTGEGWDLDFHLTH----------FDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRV  500 (567)
T ss_pred             ceEEEEEEECCccCCCCCCCC----------CCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEc
Confidence            479999999998742  1100          011245899999998764     679999999999999 9999999999


Q ss_pred             CCCCceEEEEEEECCCCC-CceEEEEEeeccccccCCC
Q psy13645        148 PPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD  184 (191)
Q Consensus       148 p~~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~  184 (191)
                      |+++- |+|.|+|+|..+ ++++|+..+|+..|+.|-+
T Consensus       501 pELA~-lRf~V~D~d~~~~d~figq~~lPv~~Lr~GYR  537 (567)
T PLN02228        501 PELAL-LWFKVQDYDNDTQNDFAGQTCLPLPELKSGVR  537 (567)
T ss_pred             CceeE-EEEEEEeCCCCCCCCEEEEEEcchhHhhCCee
Confidence            99885 999999998776 9999999999999987644

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.44  E-value=2.5e-12  Score=86.20  Aligned_cols=92  Identities=37%  Similarity=0.586  Sum_probs=77.9

Q ss_pred             EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe---eeeeeeecCCCCCccccEEEEEeeCCCCCceE
Q psy13645         78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL---TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRI  154 (191)
Q Consensus        78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~---~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l  154 (191)
                      |.|.|++|++|+....              ....+|||++++.+.   ..+|+++.++.+|.||++|.|.+..+. ...|
T Consensus         2 l~i~i~~~~~l~~~~~--------------~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~~l   66 (101)
T smart00239        2 LTVKIISARNLPKKDK--------------KGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPE-LAEL   66 (101)
T ss_pred             eEEEEEEeeCCCCCCC--------------CCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcc-cCEE
Confidence            6789999999986542              245799999999875   899999999999999999999976554 5569


Q ss_pred             EEEEEECCCCC-CceEEEEEeeccccccCCC
Q psy13645        155 KIQLRDNDPVN-NTVIGTHYIDLKNISNDGD  184 (191)
Q Consensus       155 ~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~  184 (191)
                      .|+|||.+..+ +.++|.+.+++.++..+..
T Consensus        67 ~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~~   97 (101)
T smart00239       67 EIEVYDKDRFGRDDFIGQVTIPLSDLLLGGR   97 (101)
T ss_pred             EEEEEecCCccCCceeEEEEEEHHHcccCcc
Confidence            99999998877 8999999999999876554

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.42  E-value=2.4e-12  Score=91.79  Aligned_cols=96  Identities=22%  Similarity=0.402  Sum_probs=77.2

Q ss_pred             EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe---eeeeeeecCCCC--CccccEEEEEeeCCCC--
Q psy13645         78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL---TGKTSVKKNSYN--PVWNEQIIFSEMFPPL--  150 (191)
Q Consensus        78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~---~~kT~~~~~~~n--P~wne~~~f~~~~p~~--  150 (191)
                      |+|.|.+|++++.++...        .|  ...+||||++.+.+.   +.+|.++.+++|  |.||+.|.|++..+..  
T Consensus         2 LRViIw~~~~v~~~~~~~--------~g--~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~   71 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNI--------TG--EKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEK   71 (133)
T ss_pred             EEEEEEECcCCccccccc--------CC--ccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccc
Confidence            789999999977544310        01  125899999999873   799999999999  9999999999766332  


Q ss_pred             --------------------CceEEEEEEECCCCC-CceEEEEEeeccccccCC
Q psy13645        151 --------------------CSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDG  183 (191)
Q Consensus       151 --------------------~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~  183 (191)
                                          ...|.++|||.|..+ |++||++.++|+.+..+.
T Consensus        72 ~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~  125 (133)
T cd08374          72 KIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA  125 (133)
T ss_pred             eeEEEeeccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence                                135999999999998 999999999999987654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PLN02270 phospholipase D alpha

Probab=99.37  E-value=5.3e-12  Score=111.61  Aligned_cols=114  Identities=22%  Similarity=0.373  Sum_probs=91.0

Q ss_pred             ceEEEEEEEEecCCCCCCh-HHHHhhhhhh---cCCCCCccCcEEEEEECCe-eeeeeeecCC-CCCccccEEEEEeeCC
Q psy13645         75 HARFIIRIYRADGLPKMNS-SLVANVKKAF---TGETKDLVDPYVQVSFAGL-TGKTSVKKNS-YNPVWNEQIIFSEMFP  148 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~-~~~~~~~~~~---~~~~~~~~dpyv~v~~~~~-~~kT~~~~~~-~nP~wne~~~f~~~~p  148 (191)
                      ++.|.++|++|++||.++. .+++++.+.+   ++..++.+||||.|.+++. ..+|+++.+. .||.|||.|..++.  
T Consensus         7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~a--   84 (808)
T PLN02270          7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCA--   84 (808)
T ss_pred             ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeec--
Confidence            5789999999999997532 2333332221   2344567899999999987 7899999884 69999999998853  


Q ss_pred             CCCceEEEEEEECCCCCCceEEEEEeeccccccCCC-CCcccc
Q psy13645        149 PLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGD-KGKDYT  190 (191)
Q Consensus       149 ~~~~~l~i~v~d~d~~~d~~iG~~~l~l~~i~~~~~-~g~~p~  190 (191)
                      +....|.|+|.|.|.++.++||.+.+|.++|.++.. +||+|.
T Consensus        85 h~~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~  127 (808)
T PLN02270         85 HMASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEI  127 (808)
T ss_pred             cCcceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEec
Confidence            555679999999999998899999999999988766 888874

>cd00030 C2 C2 domain

Probab=99.36  E-value=1.5e-11  Score=82.01  Aligned_cols=97  Identities=29%  Similarity=0.452  Sum_probs=79.2

Q ss_pred             EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-eeeeeeeecCCCCCccccEEEEEeeCCCCCceEEE
Q psy13645         78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-LTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKI  156 (191)
Q Consensus        78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i  156 (191)
                      |.|.|++|++|+....              ....+|||++.+.+ ...+|.+..++.||.||+.|.|.+... ....|.|
T Consensus         1 l~v~i~~~~~l~~~~~--------------~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~-~~~~l~i   65 (102)
T cd00030           1 LRVTVIEARNLPAKDL--------------NGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDP-ESDTLTV   65 (102)
T ss_pred             CEEEEEeeeCCCCcCC--------------CCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCC-CCCEEEE
Confidence            4688999999976432              35689999999998 789999999999999999999997542 3456999


Q ss_pred             EEEECCCCC-CceEEEEEeeccccc-cCCC-CCccc
Q psy13645        157 QLRDNDPVN-NTVIGTHYIDLKNIS-NDGD-KGKDY  189 (191)
Q Consensus       157 ~v~d~d~~~-d~~iG~~~l~l~~i~-~~~~-~g~~p  189 (191)
                      +||+.+..+ ++++|++.+++..+. ..+. ..|+|
T Consensus        66 ~v~~~~~~~~~~~ig~~~~~l~~l~~~~~~~~~~~~  101 (102)
T cd00030          66 EVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLP  101 (102)
T ss_pred             EEEecCCCCCCceeEEEEEeHHHhhhcCCcCcceec
Confidence            999998877 899999999999987 3332 56665

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>KOG1028|consensus

Probab=99.34  E-value=6.7e-12  Score=105.81  Aligned_cols=137  Identities=25%  Similarity=0.355  Sum_probs=94.5

Q ss_pred             CCCccEEEEeEEEEEcCCCCCCCCCCC---CCCchhhhcccccCCCCCccccceEEEEEEEEecCCCCCChHHHHhhhhh
Q psy13645         26 AGGPKGYLKCDISVIGKGDTVKIPQKS---EKDEDDIEANLLLPEGVPLERQHARFIIRIYRADGLPKMNSSLVANVKKA  102 (191)
Q Consensus        26 ~~~~~G~lk~s~~v~~~gd~~~~~~~~---~~~~~~i~~~~l~~~~~~~~~~~~~L~v~i~~a~~L~~~~~~~~~~~~~~  102 (191)
                      .++..|.+.+++.-...........+.   ....++..+++++.-.+..  ..+.|+|.|.+|++|+.++.         
T Consensus       247 r~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p--~~g~ltv~v~kar~L~~~~~---------  315 (421)
T KOG1028|consen  247 RHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLP--TAGRLTVVVIKARNLKSMDV---------  315 (421)
T ss_pred             cccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeec--CCCeEEEEEEEecCCCcccC---------
Confidence            467778888773333222211111111   1111221246665444433  46899999999999999885         


Q ss_pred             hcCCCCCccCcEEEEEECCe-----eeeeeeecCCCCCccccEEEEEeeCCCCCc-eEEEEEEECCCCC-CceEEEEEee
Q psy13645        103 FTGETKDLVDPYVQVSFAGL-----TGKTSVKKNSYNPVWNEQIIFSEMFPPLCS-RIKIQLRDNDPVN-NTVIGTHYID  175 (191)
Q Consensus       103 ~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~~~nP~wne~~~f~~~~p~~~~-~l~i~v~d~d~~~-d~~iG~~~l~  175 (191)
                           .+..||||++.+...     +.+|.+.+++.||+|||+|.|.+....+.. .|.|+|||+|.++ +++||.+.+-
T Consensus       316 -----~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG  390 (421)
T KOG1028|consen  316 -----GGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILG  390 (421)
T ss_pred             -----CCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEec
Confidence                 477899999987432     789999999999999999999764333443 5999999999998 8899988776


Q ss_pred             ccc
Q psy13645        176 LKN  178 (191)
Q Consensus       176 l~~  178 (191)
                      ...
T Consensus       391 ~~~  393 (421)
T KOG1028|consen  391 SDS  393 (421)
T ss_pred             CCC
Confidence            554

>KOG1264|consensus

Probab=99.33  E-value=6.9e-12  Score=109.44  Aligned_cols=93  Identities=24%  Similarity=0.459  Sum_probs=79.2

Q ss_pred             eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-----eeeee-eecCCCCCccc-cEEEEEeeCC
Q psy13645         76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-----TGKTS-VKKNSYNPVWN-EQIIFSEMFP  148 (191)
Q Consensus        76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-----~~kT~-~~~~~~nP~wn-e~~~f~~~~p  148 (191)
                      ..|.|.|+.|+.|++..               ++...|||+|.+.|.     +++|+ ++.|++||+|| |.|+|.+.+|
T Consensus      1065 ~~lsv~vigaRHL~k~g---------------r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nP 1129 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG---------------RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNP 1129 (1267)
T ss_pred             eEEEEEEeeccccccCC---------------CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCC
Confidence            57899999999999543               466789999999875     55555 45679999999 9999999999


Q ss_pred             CCCceEEEEEEECCCCC-CceEEEEEeeccccccCCC
Q psy13645        149 PLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD  184 (191)
Q Consensus       149 ~~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~  184 (191)
                      ..+- |+|.|+|.|..+ ..|||++++|+..|..+-+
T Consensus      1130 e~A~-lRF~V~eeDmfs~~~FiaqA~yPv~~ik~GfR 1165 (1267)
T KOG1264|consen 1130 EFAF-LRFVVYEEDMFSDPNFLAQATYPVKAIKSGFR 1165 (1267)
T ss_pred             ceEE-EEEEEecccccCCcceeeeeecchhhhhccce
Confidence            9886 999999999999 7799999999999877543

>KOG1011|consensus

Probab=99.30  E-value=3.8e-12  Score=108.97  Aligned_cols=93  Identities=26%  Similarity=0.464  Sum_probs=80.4

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCce
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSR  153 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~  153 (191)
                      ..+.++++|.+|++|...|.              .|.+||||.++++..+.+|+++...+||+|||.|+|.+..  ..++
T Consensus       293 wsakitltvlcaqgl~akdk--------------tg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechn--stdr  356 (1283)
T KOG1011|consen  293 WSAKITLTVLCAQGLIAKDK--------------TGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHN--STDR  356 (1283)
T ss_pred             cceeeEEeeeecccceeccc--------------CCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecC--CCce
Confidence            46789999999999988774              4779999999999999999999999999999999999754  3467


Q ss_pred             EEEEEEECCCC------------CCceEEEEEeeccccccC
Q psy13645        154 IKIQLRDNDPV------------NNTVIGTHYIDLKNISND  182 (191)
Q Consensus       154 l~i~v~d~d~~------------~d~~iG~~~l~l~~i~~~  182 (191)
                      |+++|||.|..            +|+|+|+..|.+..+...
T Consensus       357 ikvrvwded~dlksklrqkl~resddflgqtvievrtlsge  397 (1283)
T KOG1011|consen  357 IKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLSGE  397 (1283)
T ss_pred             eEEEEecCcccHHHHHHHHhhhcccccccceeEEEEecccc
Confidence            99999998753            489999999998887643

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.20  E-value=4.3e-11  Score=108.07  Aligned_cols=96  Identities=27%  Similarity=0.450  Sum_probs=85.0

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-eeeeeeecCCCCCccccEEEEEeeCCCCCc
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-TGKTSVKKNSYNPVWNEQIIFSEMFPPLCS  152 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~~~nP~wne~~~f~~~~p~~~~  152 (191)
                      +.+.|+|.+..|++|+..|.              ++.+||||++.+.+. .++|+++++++||.|||++..++.+-. .+
T Consensus      1038 nsG~l~I~~~~~~nl~~~d~--------------ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~-~D 1102 (1227)
T COG5038        1038 NSGYLTIMLRSGENLPSSDE--------------NGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRV-KD 1102 (1227)
T ss_pred             ccCcEEEEEeccCCCccccc--------------CCCCCceEEEEecceecccccchhccCCCCccccceEeeeccc-cc
Confidence            47889999999999998774              678999999999988 899999999999999999999986433 44


Q ss_pred             eEEEEEEECCCCC-CceEEEEEeeccccccCCC
Q psy13645        153 RIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD  184 (191)
Q Consensus       153 ~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~  184 (191)
                      .+.+.|+|||... ++.||++.++|+.+..++.
T Consensus      1103 ~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~ 1135 (1227)
T COG5038        1103 VLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGT 1135 (1227)
T ss_pred             eEEEEEeecccCCCccccccccccHhhcCcCCc
Confidence            5999999999988 9999999999999987766

>KOG1031|consensus

Probab=99.16  E-value=3.7e-11  Score=102.05  Aligned_cols=103  Identities=31%  Similarity=0.449  Sum_probs=87.7

Q ss_pred             eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccE-EEEEeeCCCCC-ce
Q psy13645         76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQ-IIFSEMFPPLC-SR  153 (191)
Q Consensus        76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~-~~f~~~~p~~~-~~  153 (191)
                      +.|.|+|..|++||-||.+             ....|.||++.+++...||.+-.+++||.||.. |.|.+...++. +.
T Consensus         3 gkl~vki~a~r~lpvmdka-------------sd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdep   69 (1169)
T KOG1031|consen    3 GKLGVKIKAARHLPVMDKA-------------SDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEP   69 (1169)
T ss_pred             CcceeEEEeccCCcccccc-------------cccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCC
Confidence            4678999999999999953             466899999999999999999999999999977 88988655554 46


Q ss_pred             EEEEEEECCCCC-CceEEEEEeeccccccCCC-----------CCccccC
Q psy13645        154 IKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-----------KGKDYTY  191 (191)
Q Consensus       154 l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-----------~g~~p~f  191 (191)
                      |.|++.|+|..+ +|.||.+.+++..+.-...           .||+|.|
T Consensus        70 lqi~lld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pif  119 (1169)
T KOG1031|consen   70 LQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIF  119 (1169)
T ss_pred             eeEEEecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecc
Confidence            999999999998 9999999999998743211           5999987

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.04  E-value=8.4e-10  Score=99.95  Aligned_cols=95  Identities=33%  Similarity=0.567  Sum_probs=80.9

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-eeeeeeecCCCCCccccEEEEEeeCCCCCc
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-TGKTSVKKNSYNPVWNEQIIFSEMFPPLCS  152 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~~~nP~wne~~~f~~~~p~~~~  152 (191)
                      ..+.+.|+|.+|++|...+..            -.+.+|||+.+.+.+. ..||++++++.||+|||.+..++.  ...+
T Consensus       434 aIGVv~vkI~sa~~lk~~d~~------------i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~ln--s~~d  499 (1227)
T COG5038         434 AIGVVEVKIKSAEGLKKSDST------------INGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLN--SFTD  499 (1227)
T ss_pred             eeEEEEEEEeeccCccccccc------------ccCCCCceEEEEeccccCCccceeeccCCccccceEEEEec--ccCC
Confidence            467899999999999876631            1467999999998776 779999999999999999988864  6778


Q ss_pred             eEEEEEEECCCCC-CceEEEEEeeccccccC
Q psy13645        153 RIKIQLRDNDPVN-NTVIGTHYIDLKNISND  182 (191)
Q Consensus       153 ~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~  182 (191)
                      +|.++|||.+... |+.+|++.++|..+...
T Consensus       500 ~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~  530 (1227)
T COG5038         500 PLNLSLYDFNSFKSDKVVGSTQLDLALLHQN  530 (1227)
T ss_pred             ceeEEEEeccccCCcceeeeEEechHHhhhc
Confidence            8999999977776 99999999999887543

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.99  E-value=3.3e-09  Score=71.95  Aligned_cols=87  Identities=17%  Similarity=0.281  Sum_probs=69.1

Q ss_pred             EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-eeeeeeecCCCCCccccEEEEEeeCCCCCceEEE
Q psy13645         78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKI  156 (191)
Q Consensus        78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i  156 (191)
                      |.|+|.+++|+.-.+...+           .+..+|||.+.+++. +.+|++.   .||.|||+|.|++.   ....+.+
T Consensus         1 L~I~V~~~RdvdH~~~~~~-----------~~~~etyV~IKved~~kaRTr~s---rnd~WnE~F~i~Vd---k~nEiel   63 (109)
T cd08689           1 LTITITSARDVDHIASPRF-----------SKRPETYVSIKVEDVERARTKPS---RNDRWNEDFEIPVE---KNNEEEV   63 (109)
T ss_pred             CEEEEEEEecCccccchhh-----------ccCCCcEEEEEECCEEEEeccCC---CCCcccceEEEEec---CCcEEEE
Confidence            5789999999875553211           356899999999998 8888874   79999999999983   3556999


Q ss_pred             EEEECCCCCCceEEEEEeecccccc
Q psy13645        157 QLRDNDPVNNTVIGTHYIDLKNISN  181 (191)
Q Consensus       157 ~v~d~d~~~d~~iG~~~l~l~~i~~  181 (191)
                      .|||+.....-.||...+.+++|.+
T Consensus        64 ~VyDk~~~~~~Pi~llW~~~sdi~E   88 (109)
T cd08689          64 IVYDKGGDQPVPVGLLWLRLSDIAE   88 (109)
T ss_pred             EEEeCCCCeecceeeehhhHHHHHH
Confidence            9999865446689999999998754

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>KOG1328|consensus

Probab=98.90  E-value=6.4e-10  Score=96.47  Aligned_cols=93  Identities=23%  Similarity=0.434  Sum_probs=77.6

Q ss_pred             ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-------eeeeeeecCCCCCccccEEEEEeeC
Q psy13645         75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-------TGKTSVKKNSYNPVWNEQIIFSEMF  147 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-------~~kT~~~~~~~nP~wne~~~f~~~~  147 (191)
                      .-+|.|-|+-|+++.+.|.              +|.+||||+|.+++.       ..+|+|++.|+||+|+|+|.|.+..
T Consensus       946 ~q~L~veVlhA~diipLD~--------------NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~ 1011 (1103)
T KOG1328|consen  946 AQTLVVEVLHAKDIIPLDS--------------NGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPP 1011 (1103)
T ss_pred             ccchhhhhhccccccccCC--------------CCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCc
Confidence            3456777788888887774              789999999999875       7899999999999999999999732


Q ss_pred             -CCC--CceEEEEEEECCCCC-CceEEEEEeecccccc
Q psy13645        148 -PPL--CSRIKIQLRDNDPVN-NTVIGTHYIDLKNISN  181 (191)
Q Consensus       148 -p~~--~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~  181 (191)
                       |+.  .-.|.|+|+|+|-.+ +||-|++.+-|..+..
T Consensus      1012 e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1012 EPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred             cccccccceEEEEeeccceecccccchHHHHhhCCCCC
Confidence             332  235999999999988 9999999999988754

>KOG2059|consensus

Probab=98.87  E-value=5.5e-09  Score=90.43  Aligned_cols=97  Identities=20%  Similarity=0.325  Sum_probs=81.9

Q ss_pred             ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-eeeeeeecCCCCCccccEEEEEeeCCCCCce
Q psy13645         75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSR  153 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~  153 (191)
                      ...|.|+|.+|++||..+.              .+..|||+.|.+... ..+|.++.+++.|.|.|+|.|.+  |..=..
T Consensus         4 ~~sl~vki~E~knL~~~~~--------------~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~i--P~~F~~   67 (800)
T KOG2059|consen    4 EQSLKVKIGEAKNLPSYGP--------------SGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEI--PRTFRY   67 (800)
T ss_pred             ccceeEEEeecccCCCCCC--------------CCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEec--Ccceee
Confidence            3468999999999998764              477999999999887 89999999999999999999985  433345


Q ss_pred             EEEEEEECCCCC-CceEEEEEeecccccc-CCCCCcc
Q psy13645        154 IKIQLRDNDPVN-NTVIGTHYIDLKNISN-DGDKGKD  188 (191)
Q Consensus       154 l~i~v~d~d~~~-d~~iG~~~l~l~~i~~-~~~~g~~  188 (191)
                      |.|=|||.| ++ |+.||.+.|.-++|.. .|.++|+
T Consensus        68 l~fYv~D~d-~~~D~~IGKvai~re~l~~~~~~d~W~  103 (800)
T KOG2059|consen   68 LSFYVWDRD-LKRDDIIGKVAIKREDLHMYPGKDTWF  103 (800)
T ss_pred             EEEEEeccc-cccccccceeeeeHHHHhhCCCCccce
Confidence            999999999 66 9999999999888844 4557775

>KOG2059|consensus

Probab=98.73  E-value=2.4e-08  Score=86.58  Aligned_cols=129  Identities=17%  Similarity=0.304  Sum_probs=89.3

Q ss_pred             eehhccccCCCCCCCCccEEEEeEEEEEcCCCCCCCCCCCCCCchhhhcccccCCCCCccccceEEEEEEEEecCCCCCC
Q psy13645         13 YHKWALLTDPDDIAGGPKGYLKCDISVIGKGDTVKIPQKSEKDEDDIEANLLLPEGVPLERQHARFIIRIYRADGLPKMN   92 (191)
Q Consensus        13 ~~~W~~L~~p~~~~~~~~G~lk~s~~v~~~gd~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~L~v~i~~a~~L~~~~   92 (191)
                      ...|+.|. |=|+.++++|-+.+.+.+...+..                              .-+.+.++.++++-+..
T Consensus        99 ~d~W~~L~-~VD~dsEVQG~v~l~l~~~e~~~~------------------------------~~~~c~~L~~r~~~P~~  147 (800)
T KOG2059|consen   99 KDTWFSLQ-PVDPDSEVQGKVHLELALTEAIQS------------------------------SGLVCHVLKTRQGLPII  147 (800)
T ss_pred             Cccceecc-ccCCChhhceeEEEEEEeccccCC------------------------------CcchhhhhhhcccCcee
Confidence            44688884 445667899988888766543331                              11122223333443333


Q ss_pred             hHHHHhhhhhhcCCCCCccCcEEEEEECCee----eeeeeecCCCCCccccEEEEEeeCC---------------CCCce
Q psy13645         93 SSLVANVKKAFTGETKDLVDPYVQVSFAGLT----GKTSVKKNSYNPVWNEQIIFSEMFP---------------PLCSR  153 (191)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~----~kT~~~~~~~nP~wne~~~f~~~~p---------------~~~~~  153 (191)
                                     ++..|||+++...|..    .+|++++++.+|.|+|.+.|.+..+               .+. .
T Consensus       148 ---------------~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l-~  211 (800)
T KOG2059|consen  148 ---------------NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDML-E  211 (800)
T ss_pred             ---------------CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCcee-e
Confidence                           3458999999988763    4999999999999999999998655               222 3


Q ss_pred             EEEEEEE-CCCCC-CceEEEEEeeccccc-cCCCCCcc
Q psy13645        154 IKIQLRD-NDPVN-NTVIGTHYIDLKNIS-NDGDKGKD  188 (191)
Q Consensus       154 l~i~v~d-~d~~~-d~~iG~~~l~l~~i~-~~~~~g~~  188 (191)
                      |++++|+ ++... ++|+|++.+++.... ..+.++|+
T Consensus       212 irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~  249 (800)
T KOG2059|consen  212 IRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWY  249 (800)
T ss_pred             EEEeeccchhhhhhhhhceeEEeehhhhhhccCccceE
Confidence            8899998 55555 999999999998876 44445554

>KOG1265|consensus

Probab=98.66  E-value=6.2e-08  Score=85.90  Aligned_cols=121  Identities=24%  Similarity=0.403  Sum_probs=93.1

Q ss_pred             CCCccEEEEeEEEEEcCCCCCCCCCCCCCCchhhhcccccCCCCCccccceEEEEEEEEecCCCCCChHHHHhhhhhhcC
Q psy13645         26 AGGPKGYLKCDISVIGKGDTVKIPQKSEKDEDDIEANLLLPEGVPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTG  105 (191)
Q Consensus        26 ~~~~~G~lk~s~~v~~~gd~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~  105 (191)
                      .+|-+|||...-+.+.++-+.-+-.++.     +       .++    ..+++.|+|++++-|..++             
T Consensus       669 yNG~sGYllKPdfmRrpDr~fdPFse~~-----V-------dgv----IA~t~sV~VISgqFLSdrk-------------  719 (1189)
T KOG1265|consen  669 YNGGSGYLLKPDFMRRPDRQFDPFSESP-----V-------DGV----IAATLSVTVISGQFLSDRK-------------  719 (1189)
T ss_pred             ecCCccceeChHHhhCCCcCcCCcccCc-----c-------cce----EEeeEEEEEEeeeeccccc-------------
Confidence            4788899888877777776643333220     0       123    2478999999999886554             


Q ss_pred             CCCCccCcEEEEEECCe-------eeeeeeec-CCCCCccccE-EEEE-eeCCCCCceEEEEEEECCCCCCceEEEEEee
Q psy13645        106 ETKDLVDPYVQVSFAGL-------TGKTSVKK-NSYNPVWNEQ-IIFS-EMFPPLCSRIKIQLRDNDPVNNTVIGTHYID  175 (191)
Q Consensus       106 ~~~~~~dpyv~v~~~~~-------~~kT~~~~-~~~nP~wne~-~~f~-~~~p~~~~~l~i~v~d~d~~~d~~iG~~~l~  175 (191)
                           +..||.|.+-|.       .++|+++. ++.||+|+|+ |.|. +.+|+++. |+|.||+.   +..+||+-.+|
T Consensus       720 -----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~-lRiavyeE---ggK~ig~RIlp  790 (1189)
T KOG1265|consen  720 -----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELAS-LRIAVYEE---GGKFIGQRILP  790 (1189)
T ss_pred             -----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhh-eeeeeecc---CCceeeeeccc
Confidence                 458999998763       67888886 5899999987 8887 78899987 99999997   47799999999


Q ss_pred             ccccccCCC
Q psy13645        176 LKNISNDGD  184 (191)
Q Consensus       176 l~~i~~~~~  184 (191)
                      +..|..+..
T Consensus       791 vd~l~~GYr  799 (1189)
T KOG1265|consen  791 VDGLNAGYR  799 (1189)
T ss_pred             hhcccCcce
Confidence            999887654

>KOG1011|consensus

Probab=98.65  E-value=1.2e-07  Score=81.97  Aligned_cols=113  Identities=19%  Similarity=0.320  Sum_probs=88.3

Q ss_pred             hhcccccCCCCCccccceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-------eeeeeeecC
Q psy13645         59 IEANLLLPEGVPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-------TGKTSVKKN  131 (191)
Q Consensus        59 i~~~~l~~~~~~~~~~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-------~~kT~~~~~  131 (191)
                      +...++..+|-    ....++|.|..|.||.-..               .+.-.|||+|.+.|.       +..|+...+
T Consensus      1112 vqvdlfthpgt----gehkvtvkvvaandlkwqt---------------sgmFrPFVEV~ivGP~lsDKKRK~~TKtKsn 1172 (1283)
T KOG1011|consen 1112 VQVDLFTHPGT----GEHKVTVKVVAANDLKWQT---------------SGMFRPFVEVHIVGPHLSDKKRKFSTKTKSN 1172 (1283)
T ss_pred             EEEEeecCCCC----CcceEEEEEEecccccchh---------------ccccccceEEEEecCcccchhhhccccccCC
Confidence            44556666553    3467899999999998544               255689999998764       677888889


Q ss_pred             CCCCccccEEEEEeeCC--CCCceEEEEEEECCCCC-CceEEEEEeeccccccCCC-CCcccc
Q psy13645        132 SYNPVWNEQIIFSEMFP--PLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDYT  190 (191)
Q Consensus       132 ~~nP~wne~~~f~~~~p--~~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p~  190 (191)
                      ++.|.+||.|+|.+...  ..+..|.|.|.|+...+ |..+|-+.++|+++...|. .+|+|-
T Consensus      1173 nWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va~kGS~a~W~pL 1235 (1283)
T KOG1011|consen 1173 NWAPKYNETFHFFLGNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVADKGSCACWVPL 1235 (1283)
T ss_pred             CcCcccCceeEEEeccCCCCceEEEEEeehhheeecccceeeeeeeehhhHhhcCceeEeeec
Confidence            99999999999986331  12345999999998888 9999999999999988877 568773

>PLN02352 phospholipase D epsilon

Probab=98.54  E-value=3.8e-07  Score=81.10  Aligned_cols=97  Identities=20%  Similarity=0.270  Sum_probs=72.0

Q ss_pred             ceEEEEEEEEecCCCCCChHHHHhhhh-hhcCCCCCccCcEEEEEECCe-eeeeeeecCCCCCccccEEEEEeeCCCCC-
Q psy13645         75 HARFIIRIYRADGLPKMNSSLVANVKK-AFTGETKDLVDPYVQVSFAGL-TGKTSVKKNSYNPVWNEQIIFSEMFPPLC-  151 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~-~~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~~~nP~wne~~~f~~~~p~~~-  151 (191)
                      .++|.++|++|+-+..       .+.. ..++   ...+|||.|.+++. ..+|   .+..||.|||.|..++.  +.. 
T Consensus         9 hg~l~~~i~~~~~~~~-------~~~~~~~~~---~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~a--h~~~   73 (758)
T PLN02352          9 HGTLEATIFDATPYTP-------PFPFNCIFL---NGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCA--HPLD   73 (758)
T ss_pred             ccceEEEEEEeeehhh-------ccccccccc---CCCCceEEEEeCCcEEecC---CCCCCCccccceeEEee--eecC
Confidence            6789999999983211       1000 0111   12399999999987 6678   56669999999999964  344 


Q ss_pred             ceEEEEEEECCCCCCceEEEEEeeccccccCCC--CCcccc
Q psy13645        152 SRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGD--KGKDYT  190 (191)
Q Consensus       152 ~~l~i~v~d~d~~~d~~iG~~~l~l~~i~~~~~--~g~~p~  190 (191)
                      ..|.|+|.|    +.++||.+.+|.++|..++.  +||+|.
T Consensus        74 ~~~~f~vk~----~~~~ig~~~~p~~~~~~g~~~~~~~~~~  110 (758)
T PLN02352         74 STITITLKT----KCSILGRFHIQAHQIVTEASFINGFFPL  110 (758)
T ss_pred             CcEEEEEec----CCeEEEEEEEEHHHhhCCCcccceEEEc
Confidence            459999998    47799999999999988755  799874

>KOG1326|consensus

Probab=98.42  E-value=1.4e-07  Score=84.58  Aligned_cols=89  Identities=21%  Similarity=0.322  Sum_probs=76.9

Q ss_pred             ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCee--eeeeeecCCCCCccccEEEEEeeCCCCCc
Q psy13645         75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLT--GKTSVKKNSYNPVWNEQIIFSEMFPPLCS  152 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~--~kT~~~~~~~nP~wne~~~f~~~~p~~~~  152 (191)
                      ....+|.+.+|.+|.+.|.              ++..||||.+.+++..  -++..+.+++||++++.|.+.+..|-.. 
T Consensus       612 ~~LvrVyvv~A~~L~p~D~--------------ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek-  676 (1105)
T KOG1326|consen  612 KCLVRVYVVEAFSLQPSDG--------------NGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEK-  676 (1105)
T ss_pred             eeeEEEEEEEeeeccccCC--------------CCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhh-
Confidence            3455788999999988774              6889999999999984  6778889999999999999998887544 


Q ss_pred             eEEEEEEECCCCC-CceEEEEEeeccc
Q psy13645        153 RIKIQLRDNDPVN-NTVIGTHYIDLKN  178 (191)
Q Consensus       153 ~l~i~v~d~d~~~-d~~iG~~~l~l~~  178 (191)
                      .++++|||+|..+ |+.||+..++|+.
T Consensus       677 ~l~v~vyd~D~~~~d~~iget~iDLEn  703 (1105)
T KOG1326|consen  677 DLIVEVYDHDLEAQDEKIGETTIDLEN  703 (1105)
T ss_pred             cceeEEEEeecccccchhhceehhhhh
Confidence            4999999999998 9999999999875

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=98.34  E-value=1.2e-06  Score=61.54  Aligned_cols=112  Identities=21%  Similarity=0.323  Sum_probs=72.8

Q ss_pred             EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEEC----CeeeeeeeecCCCCCccccEEEEEeeC----C-
Q psy13645         78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFA----GLTGKTSVKKNSYNPVWNEQIIFSEMF----P-  148 (191)
Q Consensus        78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~----~~~~kT~~~~~~~nP~wne~~~f~~~~----p-  148 (191)
                      |.|.|.+|.+|+..-..+..+-.. +--...-.+++||++.+.    +...+|+++..+..|.|+-.+.|++.+    . 
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~-l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~   79 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPS-LQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNS   79 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcc-cccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCC
Confidence            356778888776432211111000 000012246899999853    238899999999999999999998531    0 


Q ss_pred             ----CCC-----ceEEEEEEECCCC-----------CCceEEEEEeeccccccC--CCCCcccc
Q psy13645        149 ----PLC-----SRIKIQLRDNDPV-----------NNTVIGTHYIDLKNISND--GDKGKDYT  190 (191)
Q Consensus       149 ----~~~-----~~l~i~v~d~d~~-----------~d~~iG~~~l~l~~i~~~--~~~g~~p~  190 (191)
                          ++.     ..|.++||+....           +|-.+|++.+|+.++...  |=.||+|.
T Consensus        80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi  143 (143)
T cd08683          80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence                111     3499999986542           256899999999999654  44899983

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG1328|consensus

Probab=98.28  E-value=1e-07  Score=83.17  Aligned_cols=100  Identities=23%  Similarity=0.316  Sum_probs=75.3

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-------------------------------
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-------------------------------  122 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-------------------------------  122 (191)
                      +..-+.|.+.+|.+|-..+.              +|.+|||....+-..                               
T Consensus       112 P~~~l~is~~~ak~l~akd~--------------ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKl  177 (1103)
T KOG1328|consen  112 PSVLLNISLLEAKDLIAKDV--------------NGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKL  177 (1103)
T ss_pred             CcHHHHHHHHHhcCccccCC--------------CCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHH
Confidence            45667788888888876663              577899887665321                               


Q ss_pred             eeeeeeecCCCCCccccEEEEEeeCCCCCceEEEEEEECCCC------------------------------------C-
Q psy13645        123 TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPV------------------------------------N-  165 (191)
Q Consensus       123 ~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i~v~d~d~~------------------------------------~-  165 (191)
                      ..-|.+.+.|+||.|+|.|.|.+..-.. +.+.+-+||+|.-                                    . 
T Consensus       178 Ikatsvk~~TLnPkW~EkF~F~IeDv~t-DqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~t  256 (1103)
T KOG1328|consen  178 IKATSVKKKTLNPKWSEKFQFTIEDVQT-DQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCT  256 (1103)
T ss_pred             hhhcccccccCCcchhhheeeehhcccc-ceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccc
Confidence            2346677889999999999999754332 4599999998731                                    2 


Q ss_pred             CceEEEEEeeccccccCCCCCcc
Q psy13645        166 NTVIGTHYIDLKNISNDGDKGKD  188 (191)
Q Consensus       166 d~~iG~~~l~l~~i~~~~~~g~~  188 (191)
                      |||+|++.+||++|-..|-+.||
T Consensus       257 DDFLGciNipl~EiP~~Gld~WF  279 (1103)
T KOG1328|consen  257 DDFLGCINIPLAEIPPDGLDQWF  279 (1103)
T ss_pred             cccccccccchhcCCcchHHHHh
Confidence            78999999999999888777665

>KOG0905|consensus

Probab=98.23  E-value=1.3e-06  Score=79.88  Aligned_cols=103  Identities=21%  Similarity=0.293  Sum_probs=81.1

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-----eeeeeeecCCCCCccccEEEEEe-eC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-----TGKTSVKKNSYNPVWNEQIIFSE-MF  147 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~~~nP~wne~~~f~~-~~  147 (191)
                      +.++|.|.|.-|++|+-...              +...||||+.++.+.     +.||++++++.||.|||.+.+.- ..
T Consensus      1522 ~~~~LtImV~H~K~L~~Lqd--------------g~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~ 1587 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQD--------------GQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPK 1587 (1639)
T ss_pred             cCceEEEEhhhhcccccccC--------------CCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCch
Confidence            46789999999999864331              456899999999764     88999999999999999988772 11


Q ss_pred             CCCC-ceEEEEEEECCCCC-CceEEEEEeeccccccCCC-CCcccc
Q psy13645        148 PPLC-SRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDYT  190 (191)
Q Consensus       148 p~~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p~  190 (191)
                      ..+. ..|.++||..+... +.++|.+.++|..+....+ -||+++
T Consensus      1588 ~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~l 1633 (1639)
T KOG0905|consen 1588 EILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNL 1633 (1639)
T ss_pred             hhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeec
Confidence            1222 45999999998877 8999999999999865444 588764

>KOG1013|consensus

Probab=98.11  E-value=4.3e-06  Score=67.16  Aligned_cols=87  Identities=25%  Similarity=0.383  Sum_probs=70.4

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-----eeeeeeecCCCCCccccEEEEEeeCC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-----TGKTSVKKNSYNPVWNEQIIFSEMFP  148 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~~~nP~wne~~~f~~~~p  148 (191)
                      ....+.|.+.++..|..+|.              ++.+||||...+...     +.+|.+.+++.+|.+|++|.+.+...
T Consensus       231 ~~~~l~vt~iRc~~l~ssDs--------------ng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pg  296 (362)
T KOG1013|consen  231 TTPGLIVTIIRCSHLASSDS--------------NGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPG  296 (362)
T ss_pred             CCCceEEEEEEeeeeecccc--------------CCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCcc
Confidence            34568889999888988885              688999999987642     78899999999999999999998655


Q ss_pred             CCCc-eEEEEEEECCCCC-CceEEEEEe
Q psy13645        149 PLCS-RIKIQLRDNDPVN-NTVIGTHYI  174 (191)
Q Consensus       149 ~~~~-~l~i~v~d~d~~~-d~~iG~~~l  174 (191)
                      ++.. .+.|+|||.+..+ .+++|-...
T Consensus       297 dLa~~kv~lsvgd~~~G~s~d~~GG~~~  324 (362)
T KOG1013|consen  297 DLAYKKVALSVGDYDIGKSNDSIGGSML  324 (362)
T ss_pred             chhcceEEEeecccCCCcCccCCCcccc
Confidence            5553 4999999999885 777775443

>KOG1013|consensus

Probab=98.07  E-value=5.3e-07  Score=72.25  Aligned_cols=96  Identities=25%  Similarity=0.365  Sum_probs=77.3

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-----eeeeeeecCCCCCccccEEEEEe--e
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-----TGKTSVKKNSYNPVWNEQIIFSE--M  146 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~~~nP~wne~~~f~~--~  146 (191)
                      ...++.+++.+|++|..|+.              ++..|||++..++.-     +.+|++..++.||.||+......  .
T Consensus        91 ~~~~~~~tl~~a~~lk~~~~--------------~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~  156 (362)
T KOG1013|consen   91 ESRMLDTTLDRAKGLKPMDI--------------NGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITD  156 (362)
T ss_pred             hhhhcceeechhcccchhhh--------------hhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceeccccc
Confidence            45678899999999999986              578999999987643     67888999999999999877663  2


Q ss_pred             CCCCCceEEEEEEECCCCC-CceEEEEEeeccccccCC
Q psy13645        147 FPPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDG  183 (191)
Q Consensus       147 ~p~~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~  183 (191)
                      .+..+..+++.|.|.+.+. .+++|+..+++..|....
T Consensus       157 ~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q  194 (362)
T KOG1013|consen  157 DDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQ  194 (362)
T ss_pred             chhhhhhhheeeccCcccccccCcccchhhhhccChhh
Confidence            3333345889999999888 899999999988876543

>KOG1326|consensus

Probab=98.02  E-value=1.1e-06  Score=78.94  Aligned_cols=94  Identities=24%  Similarity=0.317  Sum_probs=73.8

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEE-eeCCCCC-
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFS-EMFPPLC-  151 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~-~~~p~~~-  151 (191)
                      ....+++.|++|+.|..++.              .+.+|||+.+.+.++...|-++.+++||.|++.+.|. +..+.-. 
T Consensus       204 ~~~~lR~yiyQar~L~a~dk--------------~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~  269 (1105)
T KOG1326|consen  204 IHSPLRSYIYQARALGAPDK--------------DDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAH  269 (1105)
T ss_pred             hhhhhHHHHHHHHhhcCCCc--------------ccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccc
Confidence            35567788888888877664              4679999999999999999999999999999999996 3322211 


Q ss_pred             ------ceEEEEEEECCCCC-CceEEEEEeecccccc
Q psy13645        152 ------SRIKIQLRDNDPVN-NTVIGTHYIDLKNISN  181 (191)
Q Consensus       152 ------~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~  181 (191)
                            ..+.|+|||.++.+ ++++|.......-+..
T Consensus       270 ~~~~~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~~  306 (1105)
T KOG1326|consen  270 LVLKNPPIRVFEVYDLDRSGINEFKGRKKQRPYVMVQ  306 (1105)
T ss_pred             hhhcCCCeEEEEeehhhhhchHHhhcccccceEEEec
Confidence                  23889999999998 9999987665444433

>PLN02964 phosphatidylserine decarboxylase

Probab=97.89  E-value=3e-05  Score=68.58  Aligned_cols=85  Identities=21%  Similarity=0.294  Sum_probs=66.3

Q ss_pred             ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEE-EEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCce
Q psy13645         75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYV-QVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSR  153 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv-~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~  153 (191)
                      .+...+++.+|+    |+.                 .|+|. .++++-+.++|.+.++|.||+||++..|.+. |.-...
T Consensus        53 ~~~~~~~~~~~~----~~~-----------------~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~-~~~~~~  110 (644)
T PLN02964         53 SGIALLTLVGAE----MKF-----------------KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLE-KNGPHL  110 (644)
T ss_pred             cCeEEEEeehhh----hcc-----------------CCcEEEEEEecceeeeeccccccCCcccchhhceEec-cCCcce
Confidence            456667777776    441                 47765 4567777999999999999999999999874 333334


Q ss_pred             EEEEEEECCCCC-CceEEEEEeecccccc
Q psy13645        154 IKIQLRDNDPVN-NTVIGTHYIDLKNISN  181 (191)
Q Consensus       154 l~i~v~d~d~~~-d~~iG~~~l~l~~i~~  181 (191)
                      .+|+|||+++.+ ++++|.+.++|.++..
T Consensus       111 ~~~~~~~~~~~s~n~lv~~~e~~~t~f~~  139 (644)
T PLN02964        111 ARISVFETNRLSKNTLVGYCELDLFDFVT  139 (644)
T ss_pred             EEEEEEecCCCCHHHhhhheeecHhhccH
Confidence            799999999998 9999999998876543

>KOG2060|consensus

Probab=97.62  E-value=3.6e-05  Score=62.94  Aligned_cols=102  Identities=21%  Similarity=0.306  Sum_probs=77.7

Q ss_pred             ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-----eeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645         75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-----TGKTSVKKNSYNPVWNEQIIFSEMFPP  149 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~~~nP~wne~~~f~~~~p~  149 (191)
                      .+.+.|-|++|++|.....             .+...+|||+|++.+.     +.+|+...++..|-+.+.+.|.-..  
T Consensus       268 ~g~l~vEii~ar~l~~k~~-------------~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp--  332 (405)
T KOG2060|consen  268 KGDLEVEIIRARGLVVKPG-------------SKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSP--  332 (405)
T ss_pred             cCceeEEEEecccccccCC-------------cccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCC--
Confidence            4578899999999975442             1457899999998653     7789999999999888888888532  


Q ss_pred             CCceEEEEEE-ECCCCC-CceEEEEEeeccccccCC--CCCccccC
Q psy13645        150 LCSRIKIQLR-DNDPVN-NTVIGTHYIDLKNISNDG--DKGKDYTY  191 (191)
Q Consensus       150 ~~~~l~i~v~-d~d~~~-d~~iG~~~l~l~~i~~~~--~~g~~p~f  191 (191)
                      ....|.++|| |+.++- +.|+|.+.+-+.++-.+.  ..||.+-|
T Consensus       333 ~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlf  378 (405)
T KOG2060|consen  333 PGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLF  378 (405)
T ss_pred             CccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeecc
Confidence            3455999999 577776 789999988888875544  25776654

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=97.38  E-value=0.00024  Score=46.72  Aligned_cols=65  Identities=18%  Similarity=0.242  Sum_probs=50.6

Q ss_pred             eeeeeeecCCCCCccccEEEEEeeCCCCC-ceEEEEEEECCCCCCceEEEEEeeccccccCCCCCcc
Q psy13645        123 TGKTSVKKNSYNPVWNEQIIFSEMFPPLC-SRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGDKGKD  188 (191)
Q Consensus       123 ~~kT~~~~~~~nP~wne~~~f~~~~p~~~-~~l~i~v~d~d~~~d~~iG~~~l~l~~i~~~~~~g~~  188 (191)
                      .+||.+...+.||+|+|+|.|.+..-.+. ..|.|+|+.. .-+.+.||.+.+.++++...+.+.|+
T Consensus        36 ~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~-~~RKe~iG~~sL~l~s~geeE~~HW~  101 (103)
T cd08684          36 HFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQ-TPRKRTIGECSLSLRTLSTQETDHWL  101 (103)
T ss_pred             cccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeecc-CCccceeeEEEeecccCCHHHhhhhh
Confidence            78999999999999999999997554444 3588999983 22378999999999987665545553

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.83  E-value=0.016  Score=42.69  Aligned_cols=86  Identities=20%  Similarity=0.259  Sum_probs=58.1

Q ss_pred             eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEE--CCe----eeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645         76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF--AGL----TGKTSVKKNSYNPVWNEQIIFSEMFPP  149 (191)
Q Consensus        76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~--~~~----~~kT~~~~~~~nP~wne~~~f~~~~p~  149 (191)
                      ..++|+|.++.++...+                 ..+-||++++  ++.    ...|+.+. ..++.|||-+.|++....
T Consensus         8 ~~~~v~i~~~~~~~~~~-----------------~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~d   69 (158)
T cd08398           8 SNLRIKILCATYVNVND-----------------IDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPD   69 (158)
T ss_pred             CCeEEEEEeeccCCCCC-----------------cCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhc
Confidence            36789999999886422                 2477887753  454    22444444 367999999999975433


Q ss_pred             CC--ceEEEEEEECCCC----C-CceEEEEEeecccc
Q psy13645        150 LC--SRIKIQLRDNDPV----N-NTVIGTHYIDLKNI  179 (191)
Q Consensus       150 ~~--~~l~i~v~d~d~~----~-d~~iG~~~l~l~~i  179 (191)
                      +-  .+|.|+||+....    . ...+|.+.++|-+-
T Consensus        70 LPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LFd~  106 (158)
T cd08398          70 LPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLFDY  106 (158)
T ss_pred             CChhheEEEEEEEEecccCCCCceEEEEEEEEEEECC
Confidence            32  3599999986532    1 35799999988763

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.77  E-value=0.0092  Score=43.99  Aligned_cols=70  Identities=23%  Similarity=0.263  Sum_probs=49.4

Q ss_pred             ccCcEEEEEE--CCe----eeeeeeecCCCCCccccEEEEEeeCCCCC--ceEEEEEEECCCCC-CceEEEEEeecccc
Q psy13645        110 LVDPYVQVSF--AGL----TGKTSVKKNSYNPVWNEQIIFSEMFPPLC--SRIKIQLRDNDPVN-NTVIGTHYIDLKNI  179 (191)
Q Consensus       110 ~~dpyv~v~~--~~~----~~kT~~~~~~~nP~wne~~~f~~~~p~~~--~~l~i~v~d~d~~~-d~~iG~~~l~l~~i  179 (191)
                      .++-||++++  ++.    ...|+.+.-+..+.|||-+.|++....+-  ..|.|+||+....+ ...+|.+.++|-+-
T Consensus        29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence            3566777653  343    33555555466788999999997554333  35999999987655 77999999998763

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>KOG1327|consensus

Probab=96.77  E-value=0.0043  Score=53.54  Aligned_cols=74  Identities=24%  Similarity=0.279  Sum_probs=55.5

Q ss_pred             CCccCcEEEEEECC---e---eeeeeeecCCCCCccccEEE-EE-eeCCCCCceEEEEEEECCCCC-CceEEEEEeeccc
Q psy13645        108 KDLVDPYVQVSFAG---L---TGKTSVKKNSYNPVWNEQII-FS-EMFPPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKN  178 (191)
Q Consensus       108 ~~~~dpyv~v~~~~---~---~~kT~~~~~~~nP~wne~~~-f~-~~~p~~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~  178 (191)
                      .+.+|||..+.--.   .   ..+|.+++++++|.|.+... +. +........+++.+||++..+ +++||++..++++
T Consensus       154 f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~  233 (529)
T KOG1327|consen  154 FSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPFSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSE  233 (529)
T ss_pred             cccCCcceEEEEecCCCceeeccccceeccCCCCcccccccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHH
Confidence            35689999887532   1   78999999999999965422 11 222233456999999999988 7999999999988


Q ss_pred             ccc
Q psy13645        179 ISN  181 (191)
Q Consensus       179 i~~  181 (191)
                      +..
T Consensus       234 ~~~  236 (529)
T KOG1327|consen  234 LQE  236 (529)
T ss_pred             hcc
Confidence            864

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.53  E-value=0.035  Score=41.48  Aligned_cols=88  Identities=22%  Similarity=0.248  Sum_probs=58.9

Q ss_pred             eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEE--ECCe----eeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645         76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVS--FAGL----TGKTSVKKNSYNPVWNEQIIFSEMFPP  149 (191)
Q Consensus        76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~--~~~~----~~kT~~~~~~~nP~wne~~~f~~~~p~  149 (191)
                      ..++|+|..+.++...+                ...+-||++.  .++.    ...|+...-..++.|||-+.|++....
T Consensus         8 ~~f~i~i~~~~~~~~~~----------------~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~d   71 (173)
T cd08693           8 EKFSITLHKISNLNAAE----------------RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCD   71 (173)
T ss_pred             CCEEEEEEEeccCccCC----------------CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhc
Confidence            36889999999887412                2345677764  4555    335555544567999999999874422


Q ss_pred             C--CceEEEEEEECCCC----------------C-CceEEEEEeecccc
Q psy13645        150 L--CSRIKIQLRDNDPV----------------N-NTVIGTHYIDLKNI  179 (191)
Q Consensus       150 ~--~~~l~i~v~d~d~~----------------~-d~~iG~~~l~l~~i  179 (191)
                      +  ..+|.|+||+....                + ...||.+.++|-+-
T Consensus        72 LPr~ArLciti~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~  120 (173)
T cd08693          72 LPRMARLCFAIYEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY  120 (173)
T ss_pred             CChhHeEEEEEEEecccccccccccccccccccCcceEEEEEeEEEEcc
Confidence            2  23599999985421                1 46899999887663

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.36  E-value=0.043  Score=40.10  Aligned_cols=89  Identities=18%  Similarity=0.247  Sum_probs=57.0

Q ss_pred             eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEE--ECCe----eeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645         76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVS--FAGL----TGKTSVKKNSYNPVWNEQIIFSEMFPP  149 (191)
Q Consensus        76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~--~~~~----~~kT~~~~~~~nP~wne~~~f~~~~p~  149 (191)
                      ..++|++....++...+               ....+-||+++  .++.    ...|+....+.++.|||-+.|++....
T Consensus         8 ~~~~i~i~~~~~~~~~~---------------~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~   72 (156)
T cd08380           8 FNLRIKIHGITNINLLD---------------SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISD   72 (156)
T ss_pred             CCeEEEEEeeccccccC---------------CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhc
Confidence            35677777777765311               12346677765  3454    223333333468999999999864322


Q ss_pred             C--CceEEEEEEECCCCC---CceEEEEEeecccc
Q psy13645        150 L--CSRIKIQLRDNDPVN---NTVIGTHYIDLKNI  179 (191)
Q Consensus       150 ~--~~~l~i~v~d~d~~~---d~~iG~~~l~l~~i  179 (191)
                      +  +.+|.|+||+.+..+   +..||.+.++|-+-
T Consensus        73 LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          73 LPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             CChhheEEEEEEEEecCCCCcceEEEEEeEEeEcc
Confidence            2  235999999865442   57999999998764

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>KOG3837|consensus

Probab=96.23  E-value=0.0031  Score=52.58  Aligned_cols=74  Identities=23%  Similarity=0.281  Sum_probs=57.6

Q ss_pred             cCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEeeC-CCCC---------ceEEEEEEECCCC-C-CceEEEEE
Q psy13645        111 VDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSEMF-PPLC---------SRIKIQLRDNDPV-N-NTVIGTHY  173 (191)
Q Consensus       111 ~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~~~-p~~~---------~~l~i~v~d~d~~-~-d~~iG~~~  173 (191)
                      .|.||++.+.-     ++.+|.+++++.+|.|.|.|.+.+.- |...         .-++|++|....+ . |.++|++.
T Consensus       388 ld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~n  467 (523)
T KOG3837|consen  388 LDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGN  467 (523)
T ss_pred             HHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceee
Confidence            57788888742     38899999999999999999998743 2222         1299999998765 3 99999999


Q ss_pred             eeccccccCCC
Q psy13645        174 IDLKNISNDGD  184 (191)
Q Consensus       174 l~l~~i~~~~~  184 (191)
                      +.|..+....+
T Consensus       468 ikle~Len~ce  478 (523)
T KOG3837|consen  468 IKLEILENMCE  478 (523)
T ss_pred             eeehhhhcccc
Confidence            99887765443

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=96.01  E-value=0.069  Score=44.15  Aligned_cols=85  Identities=19%  Similarity=0.260  Sum_probs=67.9

Q ss_pred             EEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCC------CC
Q psy13645         78 FIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPP------LC  151 (191)
Q Consensus        78 L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~------~~  151 (191)
                      +.|.|.+|++.+....                 -.-.+..++.|....|-.+..+..|.||.++.+.+.--.      ..
T Consensus         2 ivl~i~egr~F~~~~~-----------------~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~   64 (340)
T PF12416_consen    2 IVLSILEGRNFPQRPR-----------------HPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQR   64 (340)
T ss_pred             EEEEEecccCCCCCCC-----------------ccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccC
Confidence            4688999999986531                 355788999999999998888999999999998863211      11


Q ss_pred             ceEEEEEEECC-CCC-CceEEEEEeecccc
Q psy13645        152 SRIKIQLRDND-PVN-NTVIGTHYIDLKNI  179 (191)
Q Consensus       152 ~~l~i~v~d~d-~~~-d~~iG~~~l~l~~i  179 (191)
                      ..|++++|-.| ..+ .+.||.+.++|...
T Consensus        65 tPiKl~c~a~~~~~~~re~iGyv~LdLRsa   94 (340)
T PF12416_consen   65 TPIKLQCFAVDGSTGKRESIGYVVLDLRSA   94 (340)
T ss_pred             CceEEEEEEecCCCCcceeccEEEEEcccc
Confidence            34999999988 344 88999999999998

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=95.15  E-value=0.11  Score=37.37  Aligned_cols=54  Identities=24%  Similarity=0.300  Sum_probs=38.4

Q ss_pred             eeeeecCC-CCCccccEEEEEeeC---CCCCceEEEEEEECCCCC-C----ceEEEEEeecccc
Q psy13645        125 KTSVKKNS-YNPVWNEQIIFSEMF---PPLCSRIKIQLRDNDPVN-N----TVIGTHYIDLKNI  179 (191)
Q Consensus       125 kT~~~~~~-~nP~wne~~~f~~~~---p~~~~~l~i~v~d~d~~~-d----~~iG~~~l~l~~i  179 (191)
                      .|+...-+ .++.|||.+.|++..   |. +.+|.|+||+.+... .    ..||.+.++|-+-
T Consensus        23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr-~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~   85 (142)
T PF00792_consen   23 STSYVPFSFSRPKWDEWLTFPIPISDLPR-EARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY   85 (142)
T ss_dssp             E-S-EESS-SSEEEEEEEEEEEEGGGS-T-TEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred             eccccccccccceEeeEEEeecChHHCCh-hHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence            55555544 799999999999743   43 345999999976655 4    6999999998764

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.63  E-value=0.3  Score=36.32  Aligned_cols=90  Identities=19%  Similarity=0.187  Sum_probs=58.7

Q ss_pred             eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEE--ECCe----eeeeeeec--C--CCCCccccEEEEEe
Q psy13645         76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVS--FAGL----TGKTSVKK--N--SYNPVWNEQIIFSE  145 (191)
Q Consensus        76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~--~~~~----~~kT~~~~--~--~~nP~wne~~~f~~  145 (191)
                      ..+.|+|.++.+++.-..              ....+-||.+.  .+++    ...|+...  +  ...+.|||-+.|++
T Consensus         8 ~~~~i~v~~~h~~~~~~~--------------~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i   73 (171)
T cd04012           8 DLLSVTVSSLHRIPPTWV--------------QSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPI   73 (171)
T ss_pred             ccEEEEEEEeecCChHHh--------------hccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECcc
Confidence            467888999998875321              12457788775  4555    23444322  1  23577999999986


Q ss_pred             eCCC--CCceEEEEEEECCCCC----------CceEEEEEeecccc
Q psy13645        146 MFPP--LCSRIKIQLRDNDPVN----------NTVIGTHYIDLKNI  179 (191)
Q Consensus       146 ~~p~--~~~~l~i~v~d~d~~~----------d~~iG~~~l~l~~i  179 (191)
                      ..-.  .+.+|.|++|+....+          +..||.+.++|-+-
T Consensus        74 ~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~  119 (171)
T cd04012          74 PVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF  119 (171)
T ss_pred             chhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence            4322  2345999999865432          46899999988764

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.61  E-value=0.53  Score=35.33  Aligned_cols=87  Identities=16%  Similarity=0.248  Sum_probs=53.4

Q ss_pred             EEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEE--ECCe---eeeeeeecCCCCCccccEEEEEeeCCCCC
Q psy13645         77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVS--FAGL---TGKTSVKKNSYNPVWNEQIIFSEMFPPLC  151 (191)
Q Consensus        77 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~--~~~~---~~kT~~~~~~~nP~wne~~~f~~~~p~~~  151 (191)
                      .++|+|.+++ .+..+.              .....-||++.  .++.   ..+|+...-+.++.|||-+.|++....+-
T Consensus        11 ~friki~~~~-~~~~~~--------------~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP   75 (178)
T cd08399          11 KFRVKILGID-IPVLPR--------------NTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLP   75 (178)
T ss_pred             CEEEEEEeec-ccCcCC--------------CCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCC
Confidence            5677777776 332221              11223566653  3444   33566665567799999999997553333


Q ss_pred             --ceEEEEEEECCCC----------------C-CceEEEEEeeccc
Q psy13645        152 --SRIKIQLRDNDPV----------------N-NTVIGTHYIDLKN  178 (191)
Q Consensus       152 --~~l~i~v~d~d~~----------------~-d~~iG~~~l~l~~  178 (191)
                        .+|.|+||+....                + +..||.+.+.|-+
T Consensus        76 ~~arLc~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD  121 (178)
T cd08399          76 KGALLNLQIYCGKAPALSSKKSAESPSSESKGKHQLLYYVNLLLID  121 (178)
T ss_pred             hhhEEEEEEEEEecCcccccccccccccccccccceEEEEEEEEEc
Confidence              3599999985211                1 4578888887765

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=94.44  E-value=0.5  Score=33.69  Aligned_cols=92  Identities=22%  Similarity=0.320  Sum_probs=62.7

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCee---eeeeeec-CCCCCccccEEEEEeeCCC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLT---GKTSVKK-NSYNPVWNEQIIFSEMFPP  149 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~---~kT~~~~-~~~nP~wne~~~f~~~~p~  149 (191)
                      ....+.+.|.+..++|...                  ..-+|+...+...   ..|.... .+..-.||+.|.+++.+..
T Consensus         5 ~kf~~~l~i~~l~~~p~~~------------------~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~   66 (143)
T PF10358_consen    5 VKFQFDLTIHELENLPSSN------------------GKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYR   66 (143)
T ss_pred             eeEEEEEEEEEeECcCCCC------------------CEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEE
Confidence            4567889999999888522                  2346666666552   4454443 3556889999999875422


Q ss_pred             ------CC-ceEEEEEEECCCCC-CceEEEEEeeccccccCC
Q psy13645        150 ------LC-SRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDG  183 (191)
Q Consensus       150 ------~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~  183 (191)
                            .. ..+.|.|+.....+ ...+|.+.++|.+.....
T Consensus        67 ~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~~  108 (143)
T PF10358_consen   67 DKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYANED  108 (143)
T ss_pred             cCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhCcC
Confidence                  11 23889999875444 358999999999987753

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=93.42  E-value=0.4  Score=36.03  Aligned_cols=56  Identities=14%  Similarity=0.140  Sum_probs=33.2

Q ss_pred             eeeeeeecCCCCCccccEEEEEeeCCCCC-ceEEEEEEECCCCC--C--ceEEEEEeeccc
Q psy13645        123 TGKTSVKKNSYNPVWNEQIIFSEMFPPLC-SRIKIQLRDNDPVN--N--TVIGTHYIDLKN  178 (191)
Q Consensus       123 ~~kT~~~~~~~nP~wne~~~f~~~~p~~~-~~l~i~v~d~d~~~--d--~~iG~~~l~l~~  178 (191)
                      ...|.+...+.+|.|+|++.+.+..+... ..|.|++++.....  +  ..+|.+.+||-+
T Consensus        60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            56677777889999999999886443323 34999999865432  2  699999999987

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=92.20  E-value=1.5  Score=32.45  Aligned_cols=67  Identities=10%  Similarity=0.248  Sum_probs=49.8

Q ss_pred             cCcEEEEEECCe-eeeeeeec--CCCCCccccEEEEEeeCCCCCceEEEEEEECCCCCCceEEEEEeecccc
Q psy13645        111 VDPYVQVSFAGL-TGKTSVKK--NSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNI  179 (191)
Q Consensus       111 ~dpyv~v~~~~~-~~kT~~~~--~~~nP~wne~~~f~~~~p~~~~~l~i~v~d~d~~~d~~iG~~~l~l~~i  179 (191)
                      ..-|+++.+.++ ..+|+...  ....-.+||.|.+.+..  .-..|.++||.....++..|+++.+|+-..
T Consensus        37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~--~Pesi~l~i~E~~~~~~~~la~v~vpvP~~  106 (168)
T PF15625_consen   37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITR--WPESIKLEIYEKSGLSDRLLAEVFVPVPGS  106 (168)
T ss_pred             eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEec--CCCEEEEEEEEccCccceEEEEEEeeCCCC
Confidence            356888888887 55665543  35557789999988642  234699999998875699999999987654

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=92.08  E-value=1.5  Score=29.45  Aligned_cols=52  Identities=27%  Similarity=0.349  Sum_probs=34.3

Q ss_pred             cCcEEEEEE--CCe----eeeeeeecCCCCCccccEEEEEeeCCCCC--ceEEEEEEECC
Q psy13645        111 VDPYVQVSF--AGL----TGKTSVKKNSYNPVWNEQIIFSEMFPPLC--SRIKIQLRDND  162 (191)
Q Consensus       111 ~dpyv~v~~--~~~----~~kT~~~~~~~nP~wne~~~f~~~~p~~~--~~l~i~v~d~d  162 (191)
                      .+-||++++  ++.    ...|+.+.-...+.|||-+.|++....+-  .+|.|++|+..
T Consensus        32 ~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~   91 (100)
T smart00142       32 SDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK   91 (100)
T ss_pred             ceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence            467887753  554    33455444455689999999987543332  35999999853

Outlier of C2 family.

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=91.92  E-value=0.97  Score=33.15  Aligned_cols=98  Identities=19%  Similarity=0.383  Sum_probs=67.1

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCc--EEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCC--
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDP--YVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPP--  149 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dp--yv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~--  149 (191)
                      ....|+++|+.++-..  +.     +.     .-.+..+.  .+-+.+.++.++|+.+..+.+|.+++.|.|++....  
T Consensus         7 ~~~yL~l~vlgGkAFl--d~-----l~-----~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~   74 (156)
T PF15627_consen    7 GRRYLHLRVLGGKAFL--DH-----LQ-----EPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFG   74 (156)
T ss_pred             CceEEEEEEeCchhHh--hh-----hh-----ccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccc
Confidence            4578999998876432  10     00     00022333  344567889999999999999999999999975432  


Q ss_pred             ----------CCceEEEEEEECCCCC-CceEEEEEeeccccccCC
Q psy13645        150 ----------LCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDG  183 (191)
Q Consensus       150 ----------~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~  183 (191)
                                .++.|.+.|..-|..+ ..++|...++-..+...+
T Consensus        75 ~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~  119 (156)
T PF15627_consen   75 AGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSG  119 (156)
T ss_pred             cccchhHhhcCCCceEEEEEEecCCCceEeeeeceehHHHHhccC
Confidence                      3355888888777666 688888888777664433

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=91.25  E-value=0.84  Score=34.58  Aligned_cols=55  Identities=18%  Similarity=0.350  Sum_probs=39.4

Q ss_pred             eeeeeeecCCCCCccccEEEEEeeCCCCC-ceEEEEEEECCCC--C-CceEEEEEeecc
Q psy13645        123 TGKTSVKKNSYNPVWNEQIIFSEMFPPLC-SRIKIQLRDNDPV--N-NTVIGTHYIDLK  177 (191)
Q Consensus       123 ~~kT~~~~~~~nP~wne~~~f~~~~p~~~-~~l~i~v~d~d~~--~-d~~iG~~~l~l~  177 (191)
                      ..+|-+...+.+|.|+|++.+.+...... ..|.|+++.....  . ...+|.+.+||-
T Consensus        54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~  112 (189)
T cd08695          54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM  112 (189)
T ss_pred             eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence            56788888899999999999886432222 2488988874332  2 367999999884

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=89.84  E-value=1.5  Score=33.42  Aligned_cols=55  Identities=11%  Similarity=0.217  Sum_probs=39.6

Q ss_pred             eeeeeeecCCCCCccccEEEEEeeCCCCC-ceEEEEEEECCCC----C-CceEEEEEeecc
Q psy13645        123 TGKTSVKKNSYNPVWNEQIIFSEMFPPLC-SRIKIQLRDNDPV----N-NTVIGTHYIDLK  177 (191)
Q Consensus       123 ~~kT~~~~~~~nP~wne~~~f~~~~p~~~-~~l~i~v~d~d~~----~-d~~iG~~~l~l~  177 (191)
                      ..+|-+...+.+|.|+|++.+.+...... ..|.|+++.....    . ...+|.+.+||-
T Consensus        54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            67788877899999999999886332222 3499999875322    2 357999999885

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=89.26  E-value=2.1  Score=32.19  Aligned_cols=56  Identities=14%  Similarity=0.113  Sum_probs=39.9

Q ss_pred             eeeeeeecCCCCCccccEEEEEeeCCCCC-ceEEEEEEECCCC------C-CceEEEEEeeccc
Q psy13645        123 TGKTSVKKNSYNPVWNEQIIFSEMFPPLC-SRIKIQLRDNDPV------N-NTVIGTHYIDLKN  178 (191)
Q Consensus       123 ~~kT~~~~~~~nP~wne~~~f~~~~p~~~-~~l~i~v~d~d~~------~-d~~iG~~~l~l~~  178 (191)
                      ...|.+...+.+|.|++++-..+...-.. ..|.|++++....      . ...+|.+.+||-+
T Consensus        55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~  118 (179)
T cd08696          55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR  118 (179)
T ss_pred             eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence            56777888899999999998875332222 2499999984321      1 3679999999754

Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand

>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

Probab=88.47  E-value=2.5  Score=31.53  Aligned_cols=55  Identities=20%  Similarity=0.191  Sum_probs=37.9

Q ss_pred             eeeeeecCCCCCccccEEEEEeeCCC-CCceEEEEEEECCCC-----C-CceEEEEEeeccc
Q psy13645        124 GKTSVKKNSYNPVWNEQIIFSEMFPP-LCSRIKIQLRDNDPV-----N-NTVIGTHYIDLKN  178 (191)
Q Consensus       124 ~kT~~~~~~~nP~wne~~~f~~~~p~-~~~~l~i~v~d~d~~-----~-d~~iG~~~l~l~~  178 (191)
                      .-+.++....+|.|++++.+.+.... ....|.|++++....     . ...+|.+.+||-+
T Consensus        54 ~~~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~  115 (178)
T cd08679          54 EYTSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD  115 (178)
T ss_pred             eEEEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence            33444444489999999988863222 123499999985422     3 6789999999876

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo

>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=87.39  E-value=3.6  Score=31.08  Aligned_cols=56  Identities=13%  Similarity=0.128  Sum_probs=40.4

Q ss_pred             eeeeeeecCCCCCccccEEEEEeeCCCCC-ceEEEEEEECCCC---------C-CceEEEEEeeccc
Q psy13645        123 TGKTSVKKNSYNPVWNEQIIFSEMFPPLC-SRIKIQLRDNDPV---------N-NTVIGTHYIDLKN  178 (191)
Q Consensus       123 ~~kT~~~~~~~nP~wne~~~f~~~~p~~~-~~l~i~v~d~d~~---------~-d~~iG~~~l~l~~  178 (191)
                      ...|.+...+.+|.|++++-+.+-..-.. ..|.|++++....         + ...+|.+.+||-.
T Consensus        57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~  123 (185)
T cd08697          57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK  123 (185)
T ss_pred             EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence            67788888889999999988775322112 2499999985421         2 4679999999866

Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande

>KOG1327|consensus

Probab=83.94  E-value=1.2  Score=38.95  Aligned_cols=59  Identities=22%  Similarity=0.424  Sum_probs=47.2

Q ss_pred             eeeeeeecCCCCCccccEEEEEeeCCCCCceEEEEEEECCCC----C-CceEEEEEeeccccccC
Q psy13645        123 TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPV----N-NTVIGTHYIDLKNISND  182 (191)
Q Consensus       123 ~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~i~v~d~d~~----~-d~~iG~~~l~l~~i~~~  182 (191)
                      ..+|.++.+.+||.|-+.|.+...+..+ +.++++++|.+..    . .+|+|++...+.+|...
T Consensus        42 ~~rte~i~~~~~p~f~~~~~l~y~fE~v-Q~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~  105 (529)
T KOG1327|consen   42 VGRTEVIRNVLNPFFTKKFLLQYRFEKV-QLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSS  105 (529)
T ss_pred             ccceeeeeccCCccceeeechhheeeee-eeEEEEEeecCCccCCcchhcccceeeeehhhhhhh
Confidence            4588999999999999998887665443 4599999997654    3 78999999999887553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	191
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	1e-13
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	4e-12
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	4e-12
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	9e-12
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	6e-11
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	6e-10
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	9e-10
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	9e-10
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	1e-09
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	2e-09
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	4e-09
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	9e-09
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	3e-08
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	8e-08
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	6e-08
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	6e-08
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	6e-08
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	4e-07
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	8e-08
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	8e-08
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	1e-07
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	1e-07
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	1e-07
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	2e-07
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	2e-07
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	2e-07
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	2e-07
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	2e-07
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	2e-07
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	3e-07
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	3e-07
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	3e-07
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	4e-07
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	4e-07
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	8e-07
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	8e-07
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	1e-06
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	1e-06
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	2e-06
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	2e-06
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	3e-06
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	1e-05
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	2e-04
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	3e-04
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	4e-04
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	7e-04

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 64.0 bits (156), Expect = 1e-13
 Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 18/114 (15%)

Query: 80  IRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNE 139
           + +  A  +PK                     DP V V F     KT    N  NPVWNE
Sbjct: 11  VIVESASNIPKTKF---------------GKPDPIVSVIFKDEKKKTKKVDNELNPVWNE 55

Query: 140 QIIFSEMFPPL--CSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKGKDYT 190
            + F     PL   S + I ++D + +  N +IGT  + LK+++ D  +   Y 
Sbjct: 56  ILEFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYK 109

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 60.4 bits (146), Expect = 4e-12
 Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 9/113 (7%)

Query: 80  IRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLT-GKTSVKKNSYNPVWN 138
           +RI  A GL     SL    + +   +   L+DPY+ VS   +  G+TS K+ +  P +N
Sbjct: 33  VRIGEAVGLQPTRWSL----RHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYN 88

Query: 139 EQIIFSEMFPPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKGKDYT 190
           E+   +         +++ +    P+  +  +    +  + +         + 
Sbjct: 89  EEFCAN---VTDGGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFE 138

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 59.9 bits (145), Expect = 4e-12
 Identities = 20/114 (17%), Positives = 47/114 (41%), Gaps = 8/114 (7%)

Query: 80  IRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLT-GKTSVKKNSYNPVWN 138
           I+I  A  L     SL   V          L+DPY+ ++      G+T+ K+ + +P W+
Sbjct: 10  IKICEAVSLKPTAWSLRDAV---GPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66

Query: 139 EQIIFSEMFPPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKGKDYTY 191
           ++ +          +I++ +  + P+  +  +    I  + +  +G +  +   
Sbjct: 67  DEFVTDVCNG---RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWI 117

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 58.5 bits (142), Expect = 9e-12
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 4/85 (4%)

Query: 98  NVKKAFTGETKDLVDPYVQVSFAGL---TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRI 154
            V K   G+  D  DPYV++  +       +T    N  NPVWNE   F  + P   + +
Sbjct: 14  KVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI-LDPNQENVL 72

Query: 155 KIQLRDNDPVNNTVIGTHYIDLKNI 179
           +I L D + V +  +GT    + ++
Sbjct: 73  EITLMDANYVMDETLGTATFTVSSM 97

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 56.9 bits (137), Expect = 6e-11
 Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 3/92 (3%)

Query: 95  LVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRI 154
           L   VKKA     ++  + YV +    +   T   + S  P W +  +F      L   +
Sbjct: 7   LCVGVKKAKFDGAQEKFNTYVTLKVQNVKSTTIAVRGS-QPSWEQDFMFEI--NRLDLGL 63

Query: 155 KIQLRDNDPVNNTVIGTHYIDLKNISNDGDKG 186
            +++ +   + +T++GT +I L+ I    ++G
Sbjct: 64  TVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEG 95

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 53.8 bits (130), Expect = 6e-10
 Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 17/107 (15%)

Query: 80  IRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNE 139
           +++ +A  L   +          F+G      DP+  +       +T     + NP WN+
Sbjct: 17  VKVLKAADLLAAD----------FSG----KSDPFCLLELGNDRLQTHTVYKNLNPEWNK 62

Query: 140 QIIFSEMFPPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDK 185
              F      +   +++ + D D       +G   I L +I +    
Sbjct: 63  VFTFPI--KDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPN 107

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 54.1 bits (130), Expect = 9e-10
 Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 7/97 (7%)

Query: 87  GLPKMNSSLVANVKKAFTGETKDLV---DPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIF 143
           G   M S L   V  A   E K       PYV+V+  G + KT    N+ +P W + +  
Sbjct: 30  GSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTV 89

Query: 144 SEMFPPLCSRIKIQLRDNDPV-NNTVIGTHYIDLKNI 179
                P+ S++  ++  +  + ++ ++GT  +D+   
Sbjct: 90  I--VTPV-SKLHFRVWSHQTLKSDVLLGTAALDIYET 123

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 53.7 bits (129), Expect = 9e-10
 Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 27/126 (21%)

Query: 80  IRIYRADGLPKMNSSLVANVKKAFTGETKDLV--------DPYVQVSFAGLTGKTSVKKN 131
           ++    DG  K ++ +   V  A     + L         DPYV V       +T     
Sbjct: 4   VKQSVLDGTSKWSAKISITVVCA-----QGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYG 58

Query: 132 SYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHY------------IDLKNI 179
           + NPVW E   F         RIK+++ D D    + +   +            I+++ +
Sbjct: 59  NLNPVWEENFHFE--CHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL 116

Query: 180 SNDGDK 185
           S + D 
Sbjct: 117 SGEMDV 122

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 53.1 bits (128), Expect = 1e-09
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 6/95 (6%)

Query: 92  NSSLVANVKKAFTGETKDLVDPYVQVSFAGLTG----KTSVKKNSYNPVWNEQIIFSEMF 147
            + L     +A T       D YVQ S A  TG    +T++KK   +  W E ++     
Sbjct: 25  KAELFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAE 84

Query: 148 PPLCSR-IKIQLRDNDPVN-NTVIGTHYIDLKNIS 180
             L +  + + LR  D  + ++V G   + L   S
Sbjct: 85  EELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTS 119

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 55.3 bits (132), Expect = 2e-09
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 4/97 (4%)

Query: 98  NVKKAFTGETKDLVDPYVQVSFAGL---TGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRI 154
            V K   G+  D  DPYV++  +       +T    N  NPVWNE   F    P   + +
Sbjct: 29  KVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILD-PNQENVL 87

Query: 155 KIQLRDNDPVNNTVIGTHYIDLKNISNDGDKGKDYTY 191
           +I L D + V +  +GT    + ++     K   + +
Sbjct: 88  EITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIF 124

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 52.3 bits (125), Expect = 4e-09
 Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 3/94 (3%)

Query: 93  SSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCS 152
           S L   VKKA     ++  + YV +    +   T   + S  P W +  +F      L  
Sbjct: 14  SLLCVGVKKAKFDGAQEKFNTYVTLKVQNVESTTIAVRGS-QPSWEQDFMFEI--NRLDL 70

Query: 153 RIKIQLRDNDPVNNTVIGTHYIDLKNISNDGDKG 186
            + +++ +   + +T++GT +I L+ I    ++G
Sbjct: 71  GLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEG 104

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 51.2 bits (123), Expect = 9e-09
 Identities = 18/117 (15%), Positives = 35/117 (29%), Gaps = 22/117 (18%)

Query: 74  QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFA-----GLTGKTSV 128
           Q    ++ I    GL                       DPYV++S           KT  
Sbjct: 25  QDRVLLLHIIEGKGLISKQPGTC---------------DPYVKISLIPEDSRLRHQKTQT 69

Query: 129 KKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPV--NNTVIGTHYIDLKNISNDG 183
             +  +P ++E   F         R+ + + +       + +IG     +K++    
Sbjct: 70  VPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPD 126

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 51.0 bits (122), Expect = 3e-08
 Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 21/101 (20%)

Query: 77  RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTG-----KTSVKKN 131
              + I +A  L  M+ +                 DPYV+ S           KTS+KKN
Sbjct: 153 LLTVTIIKASNLKAMDLT--------------GFSDPYVKASLISEGRRLKKRKTSIKKN 198

Query: 132 SYNPVWNEQIIFSEMFPPLCSR-IKIQLRDNDPVN-NTVIG 170
           + NP +NE ++F      + +  + I + D D +  N VIG
Sbjct: 199 TLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIG 239

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 49.8 bits (119), Expect = 8e-08
 Identities = 23/125 (18%), Positives = 46/125 (36%), Gaps = 19/125 (15%)

Query: 72  ERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF---AGLTGKTSV 128
                + ++RI +A  LP  +S+                 DPYV++          +T V
Sbjct: 16  LYGSDQLVVRILQALDLPAKDSN--------------GFSDPYVKIYLLPDRKKKFQTKV 61

Query: 129 KKNSYNPVWNEQIIFS-EMFPPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKG 186
            + + NP++NE   FS  +      ++   + D D  + + +IG   +D      +    
Sbjct: 62  HRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPD 121

Query: 187 KDYTY 191
           +    
Sbjct: 122 RPLWR 126

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 48.9 bits (117), Expect = 6e-08
 Identities = 21/115 (18%), Positives = 44/115 (38%), Gaps = 20/115 (17%)

Query: 72  ERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF-----AGLTGKT 126
           E+Q    ++ +     L   +             E K   +PYV+             KT
Sbjct: 19  EQQTQSLVVHVKECHQLAYAD-------------EAKKRSNPYVKTYLLPDKSRQGKRKT 65

Query: 127 SVKKNSYNPVWNEQIIFSEMFPPLCSR-IKIQLRDNDPVN-NTVIGTHYIDLKNI 179
           S+K+++ NP+++E + +      L  R ++  +  +     NT +G   I + + 
Sbjct: 66  SIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSW 120

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 48.5 bits (116), Expect = 6e-08
 Identities = 21/113 (18%), Positives = 36/113 (31%), Gaps = 23/113 (20%)

Query: 80  IRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG--LTGKTSVKKNSYNPVW 137
           + +  A  L K +          F      L DP+ ++   G      T   KN+ +P W
Sbjct: 9   LTVLCAKNLAKKD----------FFR----LPDPFAKIVVDGSGQCHSTDTVKNTLDPKW 54

Query: 138 NEQIIFSEMFPPLCSRIKIQLRDNDPV----NNTVIGTHYIDLKNISNDGDKG 186
           N+              I I + ++  +        +G   +    IS   D G
Sbjct: 55  NQHYDLYVGKT---DSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTG 104

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 50.2 bits (120), Expect = 6e-08
 Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 19/116 (16%)

Query: 72  ERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFA---GLTGKTSV 128
           + Q+ + ++ I +A  LP ++                   DPYV+V          +T V
Sbjct: 15  DFQNNQLLVGIIQAAELPALDMG--------------GTSDPYVKVFLLPDKKKKFETKV 60

Query: 129 KKNSYNPVWNEQIIFS-EMFPPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISND 182
            + + NPV+NEQ  F           + + + D D  + + +IG   + +  +   
Sbjct: 61  HRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 116

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 47.9 bits (114), Expect = 4e-07
 Identities = 32/155 (20%), Positives = 55/155 (35%), Gaps = 24/155 (15%)

Query: 23  DDIAGGPKGYLKCDISVIGKGDTVKIPQKSEKDEDDIEANLLLPEGVPLERQHARFIIRI 82
            DI G  K  +          +   +    +++++ +         VP      +  + I
Sbjct: 100 HDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPTAG---KLTVVI 156

Query: 83  YRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTG-----KTSVKKNSYNPVW 137
             A  L KM+                 L DPYV++            KT++KKN+ NP +
Sbjct: 157 LEAKNLKKMDV--------------GGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYY 202

Query: 138 NEQIIFSEMFPPLCSR-IKIQLRDNDPVN-NTVIG 170
           NE   F   F  +    + + + D D +  N  IG
Sbjct: 203 NESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIG 237

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 48.6 bits (116), Expect = 8e-08
 Identities = 18/122 (14%), Positives = 41/122 (33%), Gaps = 22/122 (18%)

Query: 72  ERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF------AGLTGK 125
           + ++ +F I I +   L  +                +      ++V+            +
Sbjct: 39  DEKNKQFAILIIQLSNLSAL--------------LQQQDQKVNIRVAVLPCSESTTCLFR 84

Query: 126 TSVKKNSYNPVWNEQIIFSEMFPPLCSR-IKIQLRDNDPVN-NTVIGTHYIDLKNISNDG 183
           T     S   V+NE    S  +P L  + +++ +   D  +    +G   I L  +   G
Sbjct: 85  TRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSG 144

Query: 184 DK 185
           ++
Sbjct: 145 ER 146

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 48.6 bits (116), Expect = 8e-08
 Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 19/111 (17%)

Query: 74  QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF---AGLTGKTSVKK 130
           Q+ + ++ I +A  LP ++                   DPYV+V          +T V +
Sbjct: 40  QNNQLLVGIIQAAELPALDMG--------------GTSDPYVKVFLLPDKKKKFETKVHR 85

Query: 131 NSYNPVWNEQIIFSEMFPPLCSR-IKIQLRDNDPVN-NTVIGTHYIDLKNI 179
            + NPV+NEQ  F   +  L  + + + + D D  + + +IG   + +  +
Sbjct: 86  KTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 136

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 12/111 (10%)

Query: 74  QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF---AGLTGKTSVKK 130
            H    +R+  A  LP   S   +    A +       +PYV++        + +T VK+
Sbjct: 24  LHNHLTVRVIEARDLPPPISHDGSRQDMAHS-------NPYVKICLLPDQKNSKQTGVKR 76

Query: 131 NSYNPVWNEQIIFSEMFPPLCSR-IKIQLRDNDPVN-NTVIGTHYIDLKNI 179
            +  PV+ E+  F   F     R + + + D D  + + VIG   + L  +
Sbjct: 77  KTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEV 127

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 18/107 (16%)

Query: 79  IIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTS-VKKNSYNPVW 137
            + +  A GL   +          F       +DPYVQ++      K++  +     P W
Sbjct: 13  EVVLVSAKGLEDAD----------FLN----NMDPYVQLTCRTQDQKSNVAEGMGTTPEW 58

Query: 138 NEQIIFSEMFPPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDG 183
           NE  IF+       + +K ++ D D    +  +G   I L+ +  +G
Sbjct: 59  NETFIFT--VSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEG 103

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 19/73 (26%)

Query: 77  RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF-----AGLTGKTSVKKN 131
              + + +A  LPK +                 L DPYV+V+           KT VKK 
Sbjct: 31  TLTVVVLKARHLPKSDV--------------SGLSDPYVKVNLYHAKKRISKKKTHVKKC 76

Query: 132 SYNPVWNEQIIFS 144
           + N V+NE  +F 
Sbjct: 77  TPNAVFNELFVFD 89

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 20/119 (16%)

Query: 74  QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTG-----KTSV 128
                I+ +  A  L  M+ + ++              DPYV++            KT  
Sbjct: 29  DREVLIVVVRDAKNLVPMDPNGLS--------------DPYVKLKLIPDPKSESKQKTKT 74

Query: 129 KKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKG 186
            K S NP WNE   F         R+ +++ D D  + N  +G+    +  +   G  G
Sbjct: 75  IKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDG 133

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 19/73 (26%)

Query: 77  RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF-----AGLTGKTSVKKN 131
             I+ I +A  L  M+                   DPYV+V            KT  KK 
Sbjct: 17  SIIVNIIKARNLKAMDI--------------GGTSDPYVKVWLMYKDKRVEKKKTVTKKR 62

Query: 132 SYNPVWNEQIIFS 144
           + NP++NE   F 
Sbjct: 63  NLNPIFNESFAFD 75

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 25/125 (20%), Positives = 44/125 (35%), Gaps = 24/125 (19%)

Query: 72  ERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF-----AGLTGKT 126
           ++   + I+ I  A  LP                      +PYV++ F          +T
Sbjct: 17  DKVGHQLIVTILGAKDLPSRED--------------GRPRNPYVKIYFLPDRSDKNKRRT 62

Query: 127 SVKKNSYNPVWNEQIIFSEMFPP-LCSR-IKIQLRDNDPVN---NTVIGTHYIDLKNISN 181
              K +  P WN+  I+S +       R ++I L D   V    +  +G   I+L+    
Sbjct: 63  KTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALL 122

Query: 182 DGDKG 186
           D +  
Sbjct: 123 DDEPH 127

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 19/73 (26%)

Query: 77  RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF---AGLTG--KTSVKKN 131
             I+ I R   L  M++                  DP+V++      G     KT +KK 
Sbjct: 38  GLIVGIIRCVHLAAMDA--------------NGYSDPFVKLWLKPDMGKKAKHKTQIKKK 83

Query: 132 SYNPVWNEQIIFS 144
           + NP +NE+  + 
Sbjct: 84  TLNPEFNEEFFYD 96

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 19/111 (17%)

Query: 74  QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF---AGLTGKTSVKK 130
           Q+ + ++ I +A  LP ++                   DPYV+V          +T V +
Sbjct: 32  QNNQLLVGIIQAAELPALDMG--------------GTSDPYVKVFLLPDKKKKFETKVHR 77

Query: 131 NSYNPVWNEQIIFSEMFPPLCSR-IKIQLRDNDPVN-NTVIGTHYIDLKNI 179
            + NPV+NEQ  F   +  L  + + + + D D  + + +IG   + +  +
Sbjct: 78  KTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 128

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 46.9 bits (111), Expect = 3e-07
 Identities = 16/93 (17%), Positives = 41/93 (44%), Gaps = 5/93 (5%)

Query: 94  SLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPV-WNEQIIFSEMFPPLC- 151
           +L+ ++K       +   D   +V+F G +  + V +N  +   ++E   +         
Sbjct: 22  ALIVHLKTVSELRGR--ADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRN 79

Query: 152 SRIKIQLRD-NDPVNNTVIGTHYIDLKNISNDG 183
             ++IQ+ + +   +N +IGT  + L+ +  + 
Sbjct: 80  EVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEEN 112

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 19/118 (16%)

Query: 74  QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF---AGLTGKTSVKK 130
           +   F++ I  A GLP M+             E     DPY++++         KT V +
Sbjct: 20  ERKAFVVNIKEARGLPAMD-------------EQSMTSDPYIKMTILPEKKHKVKTRVLR 66

Query: 131 NSYNPVWNEQIIFSEMFPPLCSRIKIQLR--DNDPVN-NTVIGTHYIDLKNISNDGDK 185
            + +P ++E   F  +       + +       D  + + +IG   I L  I     K
Sbjct: 67  KTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGK 124

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 21/101 (20%)

Query: 77  RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF-----AGLTGKTSVKKN 131
           +  + I  A  L KM+                 L DPYV++            KT++KKN
Sbjct: 26  KLTVVILEAKNLKKMDV--------------GGLSDPYVKIHLMQNGKRLKKKKTTIKKN 71

Query: 132 SYNPVWNEQIIFSEMFPPLCSR-IKIQLRDNDPVN-NTVIG 170
           + NP +NE   F   F  +    + + + D D +  N  IG
Sbjct: 72  TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIG 112

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 46.1 bits (110), Expect = 4e-07
 Identities = 25/125 (20%), Positives = 44/125 (35%), Gaps = 24/125 (19%)

Query: 72  ERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF-----AGLTGKT 126
           ++   + I+ I  A  LP                      +PYV++ F          +T
Sbjct: 14  DKVGHQLIVTILGAKDLPSREDG--------------RPRNPYVKIYFLPDRSDKNKRRT 59

Query: 127 SVKKNSYNPVWNEQIIFSEMFPP-LCSR-IKIQLRDNDPVN---NTVIGTHYIDLKNISN 181
              K +  P WN+  I+S +       R ++I L D   V    +  +G   I+L+    
Sbjct: 60  KTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALL 119

Query: 182 DGDKG 186
           D +  
Sbjct: 120 DDEPH 124

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 46.7 bits (111), Expect = 4e-07
 Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 23/114 (20%)

Query: 80  IRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQV------SFAGLTGKTSVKKNSY 133
           +R+    GL K +            G      DPYV+V      +    + +T   K S 
Sbjct: 24  VRVIAGIGLAKKD----------ILG----ASDPYVRVTLYDPMNGVLTSVQTKTIKKSL 69

Query: 134 NPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKG 186
           NP WNE+I+F     P   R+  ++ D + +  +  +G   + L  +  +  + 
Sbjct: 70  NPKWNEEILFRV--HPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRL 121

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 45.8 bits (109), Expect = 8e-07
 Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 28/130 (21%)

Query: 72  ERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTG------- 124
           ++ ++     I RA GL  M+S+               L DPYV++    L G       
Sbjct: 25  DQDNSNLQCTIIRAKGLKPMDSN--------------GLADPYVKLHL--LPGASKSNKL 68

Query: 125 KTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLR--DNDPVN-NTVIGTHYIDLKNISN 181
           +T   +N+ NPVWNE + +  +      R  +++   D D    N  IG     LK +  
Sbjct: 69  RTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKL-- 126

Query: 182 DGDKGKDYTY 191
             ++ K++  
Sbjct: 127 KANQRKNFNI 136

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 46.0 bits (109), Expect = 8e-07
 Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 23/114 (20%)

Query: 80  IRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTG------KTSVKKNSY 133
           +++    GL K +    +              DPYV+V+            +T   K S 
Sbjct: 12  VKVIAGIGLAKKDILGAS--------------DPYVRVTLYDPMSGILTSVQTKTIKKSL 57

Query: 134 NPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNT-VIGTHYIDLKNISNDGDKG 186
           NP WNE+I+F     P   RI  ++ D + +     +G   + L  +  +  + 
Sbjct: 58  NPKWNEEILFR--VLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRM 109

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 20/116 (17%), Positives = 45/116 (38%), Gaps = 22/116 (18%)

Query: 71  LERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF-----AGLTGK 125
           +E +  +  + + RA  L +   S             K    PYV+V            K
Sbjct: 25  MEDKKGQLEVEVIRARSLTQKPGS-------------KSTPAPYVKVYLLENGACIAKKK 71

Query: 126 TSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQL-RDNDPV-NNTVIGTHYIDLKNI 179
           T + + + +P++ + ++F E   P    +++ +  D   + +   +G   I L+ +
Sbjct: 72  TRIARKTLDPLYQQSLVFDE--SPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEEL 125

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 22/118 (18%), Positives = 46/118 (38%), Gaps = 28/118 (23%)

Query: 74  QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTG-------KT 126
           Q  + I+ ++    L   +               +D  DPYV++    L         KT
Sbjct: 22  QRNKLIVVVHACRNLIAFS---------------EDGSDPYVRMYL--LPDKRRSGRRKT 64

Query: 127 SVKKNSYNPVWNEQIIFSEMFPPLCSR-IKIQLRDNDPV---NNTVIGTHYIDLKNIS 180
            V K + NPV+++   FS   P +  R + + ++++      +  ++G   + L +  
Sbjct: 65  HVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEE 122

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 46.4 bits (109), Expect = 2e-06
 Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 112 DPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPV-NNTVIG 170
           D Y++V F G   +T V  N+ NP W +++ F  +       +++Q+ D D   ++ ++G
Sbjct: 415 DAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLLG 474

Query: 171 THYIDLKNISND 182
           +      +  ++
Sbjct: 475 SCDRSPHSGFHE 486

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 19/116 (16%), Positives = 41/116 (35%), Gaps = 27/116 (23%)

Query: 74  QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTG-------KT 126
           ++    I +     L   + +                 +PYV+     L         KT
Sbjct: 18  RNGTLFIMVMHIKDLVTEDGADP---------------NPYVKTYL--LPDTHKTSKRKT 60

Query: 127 SVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLR--DNDPVN-NTVIGTHYIDLKNI 179
            + + + NP +NE +++S        + ++QL     + +  N  +G   + LK+ 
Sbjct: 61  KISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDF 116

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 22/124 (17%)

Query: 74  QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF---AGLTGKTSVKK 130
           Q +   ++I +A  LP  + S  +              DP+V++          +T VK+
Sbjct: 24  QESTLTVKIMKAQELPAKDFSGTS--------------DPFVKIYLLPDKKHKLETKVKR 69

Query: 131 NSYNPVWNEQIIFSEMFPPLCSRIKIQLR--DNDPVN-NTVIGTHYIDLKNISNDGDKGK 187
            + NP WNE  +F         +  + L+  D D  + N  IG   I L  +  D  + +
Sbjct: 70  KNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKV--DLTQMQ 127

Query: 188 DYTY 191
            +  
Sbjct: 128 TFWK 131

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 25/127 (19%), Positives = 46/127 (36%), Gaps = 31/127 (24%)

Query: 71  LERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQV------------- 117
           +       II I +A  L   +++                 DP+V+V             
Sbjct: 13  INYDLGNLIIHILQARNLVPRDNN--------------GYSDPFVKVYLLPGRGQVMVVQ 58

Query: 118 -SFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLR--DNDPVN-NTVIGTHY 173
            + A    +T   + S NP WN+ +I+  +      +  +++   D D  + N  +G   
Sbjct: 59  NASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVL 118

Query: 174 IDLKNIS 180
           IDL + S
Sbjct: 119 IDLSSTS 125

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 28/125 (22%), Positives = 45/125 (36%), Gaps = 32/125 (25%)

Query: 77  RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTS------VKK 130
           R  +RI     LPK+N                 +VDP V V   G+   T       +  
Sbjct: 498 RLRVRIISGQQLPKVN------------KNKNSIVDPKVIVEIHGVGRDTGSRQTAVITN 545

Query: 131 NSYNPVWNEQIIFSEMFPPLCSRIKIQLRDND-------------PVNNTVIGTHYIDLK 177
           N +NP W+ +  F    P L + ++  + D D             P N+   G  ++ L 
Sbjct: 546 NGFNPRWDMEFEFEVTVPDL-ALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLL 604

Query: 178 NISND 182
           + + D
Sbjct: 605 SKNGD 609

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B Length = 799

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 18/94 (19%)

Query: 107 TKDLVDPYVQVSFAGL--------TGKTSVKKNSYNPVWNEQIIFSE--MFPPLCS-RIK 155
           ++  V  YV+V   GL          K S   NS NPVW E+    E  + P L S R+ 
Sbjct: 691 SERSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVA 750

Query: 156 IQLRDND-------PVNNTVIGTHYIDLKNISND 182
           +    N        P+N    G H++ L + SN 
Sbjct: 751 VMEEGNKFLGHRIIPINALNSGYHHLCLHSESNM 784

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A Length = 816

 Score = 39.6 bits (91), Expect = 4e-04
 Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 18/94 (19%)

Query: 107 TKDLVDPYVQVSFAGLTGKTS--------VKKNSYNPVWNEQIIFSE--MFPPLCS-RIK 155
           +   +  YV+V   GL   T         ++ N  +P ++E++   +  + P L   RI 
Sbjct: 663 SDKQISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRII 722

Query: 156 IQLRDND-------PVNNTVIGTHYIDLKNISND 182
           +   +         P++    G  ++ L+N SN 
Sbjct: 723 VSEENGKFIGHRVMPLDGIKPGYRHVPLRNESNR 756

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 38.8 bits (89), Expect = 7e-04
 Identities = 20/134 (14%), Positives = 34/134 (25%), Gaps = 28/134 (20%)

Query: 66  PEGVPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-LTG 124
           P      R      + I  A  LP                        Y ++     L  
Sbjct: 1   PNKDNSRRVDNVLKLWIIEARELPPKK-------------------RYYCELCLDDMLYA 41

Query: 125 KTSVKKNSY---NPVWNEQIIFSEMFPPLCSRIKIQLRDNDPV----NNTVIGTHYIDLK 177
           +T+ K  S       W E   F    P + +      RD+D          +G   + + 
Sbjct: 42  RTTSKPRSASGDTVFWGEHFEF-NNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVA 100

Query: 178 NISNDGDKGKDYTY 191
            ++      + Y  
Sbjct: 101 TLAGRHFTEQWYPV 114

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	191
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.81
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.8
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.8
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.8
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.8
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.8
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.79
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.79
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.78
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.78
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.78
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.77
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.77
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.77
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.77
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.77
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.77
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.77
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.76
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.76
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.75
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.75
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.75
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.74
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.74
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.74
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.73
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.73
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.73
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.73
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.73
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.72
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.72
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.72
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.7
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.68
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.67
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.67
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.66
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.62
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.62
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.61
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.58
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.57
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.55
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.52
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.48
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.48
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.36
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.53
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.46
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	93.55
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	91.62
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	90.74
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	86.42
2y3a_A	1092	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	85.1

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.80  E-value=1.2e-19  Score=131.45  Aligned_cols=101  Identities=26%  Similarity=0.378  Sum_probs=87.3

Q ss_pred             ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645         75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSEMFPP  149 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~~~p~  149 (191)
                      ...|.|+|++|++|+.++.              .+.+||||++.+.+     .+.+|++++++.||.|||+|.|.+..+.
T Consensus        30 ~~~L~v~v~~a~~L~~~d~--------------~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~   95 (149)
T 1a25_A           30 REVLIVVVRDAKNLVPMDP--------------NGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESD   95 (149)
T ss_dssp             SSEEEEEEEEEESCCCCST--------------TSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGG
T ss_pred             CCEEEEEEEEeeCCCCCCC--------------CCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEecccc
Confidence            3579999999999998874              46789999999974     4889999999999999999999976544


Q ss_pred             CCceEEEEEEECCCCC-CceEEEEEeeccccccCCCCCccc
Q psy13645        150 LCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKGKDY  189 (191)
Q Consensus       150 ~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~~g~~p  189 (191)
                      ....|.|+|||++..+ +++||++.++|.++.....++|++
T Consensus        96 ~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~W~~  136 (149)
T 1a25_A           96 KDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFK  136 (149)
T ss_dssp             GGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTCCEEEEEE
T ss_pred             CCCEEEEEEEECCCCCCCCEEEEEEEEHHHhCcCccCCeEE
Confidence            4567999999999987 999999999999998766667765

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.80  E-value=4e-19  Score=127.18  Aligned_cols=101  Identities=30%  Similarity=0.409  Sum_probs=86.6

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCC--C
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPL--C  151 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~--~  151 (191)
                      ..+.|.|+|++|++|+.++.               +..||||++.+.+.+.+|++++++.||+|||+|.|.+..+..  .
T Consensus         5 ~~g~L~v~v~~a~~L~~~~~---------------g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~   69 (140)
T 2dmh_A            5 SSGMLRVIVESASNIPKTKF---------------GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFS   69 (140)
T ss_dssp             BCCEEEEEEEEEESCCCCSS---------------SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTT
T ss_pred             CCcEEEEEEEEeeCCCCCCC---------------CCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCC
Confidence            35789999999999998771               568999999999999999999999999999999999865432  4


Q ss_pred             ceEEEEEEECCCCC-CceEEEEEeeccccccCCC-CCccc
Q psy13645        152 SRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDY  189 (191)
Q Consensus       152 ~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p  189 (191)
                      ..|.|+|||++..+ +++||++.++|.++..++. +.|++
T Consensus        70 ~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~  109 (140)
T 2dmh_A           70 SSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYK  109 (140)
T ss_dssp             CEEEEEEEETTCSSSCCCCEEEEEEGGGTCSSSCEEEEEE
T ss_pred             CEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCceeEEe
Confidence            56999999999987 9999999999999976554 45543

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.80  E-value=6.1e-19  Score=127.43  Aligned_cols=99  Identities=25%  Similarity=0.385  Sum_probs=84.8

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCce
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSR  153 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~  153 (191)
                      ..+.|.|+|++|++|+.++.              .+.+||||++.+++.+.+|++++++.||.|||+|.|.+..+.  ..
T Consensus        15 ~~~~L~V~v~~a~~L~~~d~--------------~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~--~~   78 (148)
T 3kwu_A           15 WSAKISITVVCAQGLQAKDK--------------TGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSS--DR   78 (148)
T ss_dssp             CCEEEEEEEEEEESCCCCST--------------TSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECSTT--CE
T ss_pred             cccEEEEEEEeeeCCCCCCC--------------CCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCCC--CE
Confidence            46899999999999998874              467999999999999999999999999999999999986543  56


Q ss_pred             EEEEEEECCCC-----------C-CceEEEEEeeccccccCCCCCccc
Q psy13645        154 IKIQLRDNDPV-----------N-NTVIGTHYIDLKNISNDGDKGKDY  189 (191)
Q Consensus       154 l~i~v~d~d~~-----------~-d~~iG~~~l~l~~i~~~~~~g~~p  189 (191)
                      |.|+|||++..           + +++||++.++|+++. .+.+.|+|
T Consensus        79 l~~~v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~-~~~~~w~~  125 (148)
T 3kwu_A           79 IKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLS-GEMDVWYN  125 (148)
T ss_dssp             EEEEEEECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGCC-SEEEEEEE
T ss_pred             EEEEEEECCCCccccccccccCCCCccEEEEEEEHHHCc-CCCCEEEE
Confidence            99999999985           5 999999999999983 23344543

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.80  E-value=3e-19  Score=126.87  Aligned_cols=99  Identities=16%  Similarity=0.241  Sum_probs=86.3

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCce
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSR  153 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~  153 (191)
                      ..+.|.|+|++|++|+.++.              .+.+||||++.+++.+.+|++++++.||.|||+|.|.+..  ....
T Consensus        11 ~~~~L~v~v~~a~~L~~~d~--------------~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~--~~~~   74 (133)
T 2ep6_A           11 DVGILQVKVLKAADLLAADF--------------SGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKD--IHDV   74 (133)
T ss_dssp             CSEEEEEEEEEEESCCCSSS--------------SSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESC--TTCE
T ss_pred             CceEEEEEEEeeECCCCCCC--------------CCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecC--CCCE
Confidence            57899999999999998773              4678999999999999999999999999999999999753  3456


Q ss_pred             EEEEEEECCCCC-CceEEEEEeeccccccCCCCCccc
Q psy13645        154 IKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKGKDY  189 (191)
Q Consensus       154 l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~~g~~p  189 (191)
                      |.|+|||++..+ +++||++.++|.++..+ ...|+|
T Consensus        75 l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~-~~~w~~  110 (133)
T 2ep6_A           75 LEVTVFDEDGDKPPDFLGKVAIPLLSIRDG-QPNCYV  110 (133)
T ss_dssp             EEEEEEEEETTEEEEECCBCEEEGGGCCSS-CCEECC
T ss_pred             EEEEEEECCCCCCCCeeEEEEEEHHHccCC-CceEEE
Confidence            999999999987 99999999999999653 345554

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.80  E-value=3.3e-19  Score=125.30  Aligned_cols=103  Identities=23%  Similarity=0.278  Sum_probs=84.6

Q ss_pred             ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC---eeeeeeeecCCCCCccccEEEEEeeCCCCC
Q psy13645         75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG---LTGKTSVKKNSYNPVWNEQIIFSEMFPPLC  151 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~~~nP~wne~~~f~~~~p~~~  151 (191)
                      .+.|.|+|++|++|+.++...           ..+.+||||++.+++   .+.+|++++++.||.|||+|.|.+..+. .
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d-----------~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~   69 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGD-----------MLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQ-E   69 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHH-----------HHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTS-C
T ss_pred             CcEEEEEEEeeeCCCCCCccc-----------cCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCC-C
Confidence            368999999999999864210           136689999999986   5899999999999999999999985554 4


Q ss_pred             ceEEEEEEECCCCCCceEEEEEeeccccccCCC-CCccc
Q psy13645        152 SRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGD-KGKDY  189 (191)
Q Consensus       152 ~~l~i~v~d~d~~~d~~iG~~~l~l~~i~~~~~-~g~~p  189 (191)
                      ..|.|+|||++..++++||++.++|+++..+.. +.|+|
T Consensus        70 ~~l~i~V~d~d~~~~~~iG~~~i~l~~l~~~~~~~~~~~  108 (126)
T 1rlw_A           70 NVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFI  108 (126)
T ss_dssp             CEEEEEEEECCSSCCEEEEEEEEEGGGSCTTCEEEEEEE
T ss_pred             CEEEEEEEECCCCCCceeEEEEEEHHHccCCCcEEEEEE
Confidence            569999999998789999999999999976543 45554

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.79  E-value=4.5e-19  Score=126.31  Aligned_cols=101  Identities=16%  Similarity=0.268  Sum_probs=83.2

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEE-----CCeeeeeeeecCCCCCccccEEEEE-eeC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF-----AGLTGKTSVKKNSYNPVWNEQIIFS-EMF  147 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~-----~~~~~kT~~~~~~~nP~wne~~~f~-~~~  147 (191)
                      ....|.|+|++|++|+. +.              .+.+||||++.+     ...+.+|++++++.||+|||+|.|. +..
T Consensus        18 ~~~~L~V~V~~a~~L~~-~~--------------~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~   82 (134)
T 2b3r_A           18 RNGTLFIMVMHIKDLVT-ED--------------GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSK   82 (134)
T ss_dssp             ETTEEEEEEEEEECCCC-TT--------------SCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCH
T ss_pred             cCCEEEEEEEEeeCCCC-CC--------------CCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCH
Confidence            45789999999999995 42              467899999998     3348899999999999999999998 643


Q ss_pred             CC-CCceEEEEEEECCCCC-CceEEEEEeeccccccCCC-CCccc
Q psy13645        148 PP-LCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDY  189 (191)
Q Consensus       148 p~-~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p  189 (191)
                      .. ....|.|+|||++..+ +++||++.++|+++..+.. ++|++
T Consensus        83 ~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~  127 (134)
T 2b3r_A           83 ETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQ  127 (134)
T ss_dssp             HHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEE
T ss_pred             HHhCcCEEEEEEEECCCCCCCcEEEEEEEEhhhccCCCCcceeEE
Confidence            22 2346999999999988 9999999999999976443 56765

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.79  E-value=2.5e-19  Score=130.88  Aligned_cols=109  Identities=20%  Similarity=0.318  Sum_probs=86.4

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCee-eeeeeecCCCCCccccEEEEEeeCCCCCc
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLT-GKTSVKKNSYNPVWNEQIIFSEMFPPLCS  152 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~-~kT~~~~~~~nP~wne~~~f~~~~p~~~~  152 (191)
                      ..+.|+|+|++|++|+.+|..-  +.  .++++..+.+||||++.+++.. .+|+++++++||.|||+|.|.+..   ..
T Consensus        27 ~~g~L~V~VieA~~L~~~D~~~--~~--~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~---~~   99 (157)
T 2fk9_A           27 FNGYLRVRIGEAVGLQPTRWSL--RH--SLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD---GG   99 (157)
T ss_dssp             EEEEEEEEEEEEECCCCCHHHH--HT--TTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE---EC
T ss_pred             CccEEEEEEEEEECCCCccccc--cc--cccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC---CC
Confidence            4689999999999999887420  00  0122223668999999999874 799999999999999999999753   34


Q ss_pred             eEEEEEEECCCCC-CceEEEEEeeccccccC----C-CCCccc
Q psy13645        153 RIKIQLRDNDPVN-NTVIGTHYIDLKNISND----G-DKGKDY  189 (191)
Q Consensus       153 ~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~----~-~~g~~p  189 (191)
                      .|.|+|||+|..+ |++||.+.++|+++..+    + .+.|+|
T Consensus       100 ~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~  142 (157)
T 2fk9_A          100 HLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVD  142 (157)
T ss_dssp             EEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEE
T ss_pred             EEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEE
Confidence            6999999999988 99999999999998754    1 156665

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.78  E-value=5.1e-19  Score=124.82  Aligned_cols=101  Identities=24%  Similarity=0.380  Sum_probs=81.5

Q ss_pred             ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEEC-----CeeeeeeeecCCCCCccccEEEEEeeCC-
Q psy13645         75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFA-----GLTGKTSVKKNSYNPVWNEQIIFSEMFP-  148 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~-----~~~~kT~~~~~~~nP~wne~~~f~~~~p-  148 (191)
                      .+.|.|+|++|++|+.++.              .+.+||||++.+.     ..+.+|++++++.||.|||+|.|.+..+ 
T Consensus        17 ~~~L~v~v~~a~~L~~~d~--------------~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~   82 (129)
T 2bwq_A           17 GHQLIVTILGAKDLPSRED--------------GRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRR   82 (129)
T ss_dssp             TTEEEEEEEEEESCCCCTT--------------SCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGG
T ss_pred             CCEEEEEEEEeeCCCCCCC--------------CCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHH
Confidence            4689999999999998874              4678999999983     4589999999999999999999995322 


Q ss_pred             C-CCceEEEEEEECCCCC---CceEEEEEeeccccccCCCCCccc
Q psy13645        149 P-LCSRIKIQLRDNDPVN---NTVIGTHYIDLKNISNDGDKGKDY  189 (191)
Q Consensus       149 ~-~~~~l~i~v~d~d~~~---d~~iG~~~l~l~~i~~~~~~g~~p  189 (191)
                      . ....|.|+|||++..+   +++||++.++|.++...+.++|+|
T Consensus        83 ~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~~~~W~~  127 (129)
T 2bwq_A           83 EFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHWYK  127 (129)
T ss_dssp             GGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSSCEEEEE
T ss_pred             HhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCcCCccEE
Confidence            1 2346999999999876   899999999999997766677876

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.78  E-value=7.5e-19  Score=126.00  Aligned_cols=102  Identities=25%  Similarity=0.354  Sum_probs=84.1

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC---eeeeeeeecCCCCCccccEEEEEeeCCC-
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG---LTGKTSVKKNSYNPVWNEQIIFSEMFPP-  149 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~~~nP~wne~~~f~~~~p~-  149 (191)
                      ....|.|+|++|++|+.++.              .+.+||||++.+.+   ...+|++++++.||.|||.|.|.+..+. 
T Consensus        24 ~~~~L~v~v~~a~~L~~~d~--------------~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~   89 (141)
T 2d8k_A           24 QESTLTVKIMKAQELPAKDF--------------SGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEK   89 (141)
T ss_dssp             SSCCEEEEEEEEESCCCCSS--------------SSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHH
T ss_pred             CCCEEEEEEEEeECCCCCCC--------------CCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHH
Confidence            45789999999999998873              46789999999953   4889999999999999999999852211 


Q ss_pred             -CCceEEEEEEECCCCC-CceEEEEEeeccccccCCC-CCccc
Q psy13645        150 -LCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDY  189 (191)
Q Consensus       150 -~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p  189 (191)
                       ....|.|+|||++..+ +++||++.++|.++..+.. +.|++
T Consensus        90 ~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~  132 (141)
T 2d8k_A           90 VVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKD  132 (141)
T ss_dssp             HTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTSCEEEEEC
T ss_pred             cccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCCCccEEEE
Confidence             2356999999999987 9999999999999977553 56665

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.78  E-value=6.8e-19  Score=127.88  Aligned_cols=102  Identities=24%  Similarity=0.387  Sum_probs=85.1

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEEC---CeeeeeeeecCCCCCccccEEEEEeeCCCC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFA---GLTGKTSVKKNSYNPVWNEQIIFSEMFPPL  150 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~---~~~~kT~~~~~~~nP~wne~~~f~~~~p~~  150 (191)
                      ....|.|+|++|++|+.++.              .+.+||||++.+.   ..+.+|++++++.||+|||+|.|.+..+.+
T Consensus        40 ~~~~L~V~v~~a~~L~~~d~--------------~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l  105 (152)
T 1rsy_A           40 QNNQLLVGIIQAAELPALDM--------------GGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL  105 (152)
T ss_dssp             TTTEEEEEEEEEESCCCCST--------------TSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHH
T ss_pred             CCCEEEEEEEEeECCCCccC--------------CCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHc
Confidence            45689999999999998874              4678999999994   348899999999999999999998643322


Q ss_pred             -CceEEEEEEECCCCC-CceEEEEEeeccccccCCC-CCccc
Q psy13645        151 -CSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDY  189 (191)
Q Consensus       151 -~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p  189 (191)
                       ...|.|+|||++..+ +++||++.++|.++..+.. +.|++
T Consensus       106 ~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~  147 (152)
T 1rsy_A          106 GGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRD  147 (152)
T ss_dssp             TTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEE
T ss_pred             CCCEEEEEEEECCCCCCCcEEEEEEEEchhccCCCCcceEEE
Confidence             356999999999987 9999999999999966543 56765

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.77  E-value=2.4e-18  Score=124.89  Aligned_cols=95  Identities=24%  Similarity=0.403  Sum_probs=78.1

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC------eeeeeeeecCCCCCccccEEEEEeeC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG------LTGKTSVKKNSYNPVWNEQIIFSEMF  147 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~------~~~kT~~~~~~~nP~wne~~~f~~~~  147 (191)
                      ..+.|.|+|++|++|+.++.              .+.+||||++.+.+      ...+|++++++.||.|||+|.|.+..
T Consensus        18 ~~~~L~V~v~~a~~L~~~d~--------------~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~   83 (153)
T 3b7y_A           18 NSRIVRVRVIAGIGLAKKDI--------------LGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHP   83 (153)
T ss_dssp             TCEEEEEEEEEEESCC---------------------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECT
T ss_pred             CccEEEEEEEEeeCCCCCCC--------------CCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecC
Confidence            56899999999999998774              35689999999974      47899999999999999999999754


Q ss_pred             CCCCceEEEEEEECCCCC-CceEEEEEeeccccccCCC
Q psy13645        148 PPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD  184 (191)
Q Consensus       148 p~~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~  184 (191)
                      +  ...|.|+|||++..+ +++||++.++|+++..+..
T Consensus        84 ~--~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~  119 (153)
T 3b7y_A           84 Q--QHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENP  119 (153)
T ss_dssp             T--TCEEEEEEEECCSSSCCEEEEEEEEECCSCCBCCT
T ss_pred             C--CCEEEEEEEECCCCcCCCeeEEEEEEHHHcccCCC
Confidence            3  456999999999987 9999999999999976553

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.77  E-value=1.7e-19  Score=131.71  Aligned_cols=102  Identities=17%  Similarity=0.208  Sum_probs=84.7

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC---e---eeeeeeecCCCCCccccEEEEEeeC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG---L---TGKTSVKKNSYNPVWNEQIIFSEMF  147 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---~---~~kT~~~~~~~nP~wne~~~f~~~~  147 (191)
                      ....|+|.|.+|++|+.++.              .+.+||||++++.+   .   +.||+++++++||+|||+|.|.+..
T Consensus        41 ~~~~L~V~Vi~a~~L~~~d~--------------~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~  106 (155)
T 2z0u_A           41 KNKQFAILIIQLSNLSALLQ--------------QQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSY  106 (155)
T ss_dssp             TTTEEEEEEEEEECGGGTCC--------------SCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCH
T ss_pred             CCCEEEEEEEEccCcCCccc--------------CCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCH
Confidence            45789999999999998874              46799999999976   2   7999999999999999999999643


Q ss_pred             CCC-CceEEEEEEECCCCC-CceEEEEEeecccccc--CCCCCccc
Q psy13645        148 PPL-CSRIKIQLRDNDPVN-NTVIGTHYIDLKNISN--DGDKGKDY  189 (191)
Q Consensus       148 p~~-~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~--~~~~g~~p  189 (191)
                      ..+ ...|.|+|||+|..+ +++||++.++|+++..  .....|++
T Consensus       107 ~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~  152 (155)
T 2z0u_A          107 PALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYN  152 (155)
T ss_dssp             HHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEE
T ss_pred             HHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCCCccccceE
Confidence            222 245999999999988 9999999999999953  23356765

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.77  E-value=9.5e-19  Score=124.82  Aligned_cols=102  Identities=19%  Similarity=0.386  Sum_probs=81.7

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCC--CCCccCcEEEEEECCe-eeeeeeecCCCCCccccEEEEEeeCCCC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGE--TKDLVDPYVQVSFAGL-TGKTSVKKNSYNPVWNEQIIFSEMFPPL  150 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~--~~~~~dpyv~v~~~~~-~~kT~~~~~~~nP~wne~~~f~~~~p~~  150 (191)
                      ..+.|.|+|++|++|+.+|..  ++.   .+|.  ..+.+||||++.+.+. ..+|++++++.||.|||+|.|.+..+  
T Consensus         4 ~~g~L~v~v~~a~~L~~~d~~--~~~---~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~--   76 (136)
T 1gmi_A            4 FNGLLKIKICEAVSLKPTAWS--LRD---AVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG--   76 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHH--HCC----CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE--
T ss_pred             cceEEEEEEEeCcCCCCcccc--ccc---ccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC--
Confidence            357899999999999988741  000   0000  1234899999999887 46999999999999999999997543  


Q ss_pred             CceEEEEEEECCCCC-CceEEEEEeeccccccCC
Q psy13645        151 CSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDG  183 (191)
Q Consensus       151 ~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~  183 (191)
                       ..|.|+|||+|..+ |++||++.++|+++...+
T Consensus        77 -~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~  109 (136)
T 1gmi_A           77 -RKIELAVFHDAPIGYDDFVANCTIQFEELLQNG  109 (136)
T ss_dssp             -CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTT
T ss_pred             -CEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccC
Confidence             56999999999988 999999999999997754

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.77  E-value=7.4e-19  Score=125.17  Aligned_cols=92  Identities=25%  Similarity=0.390  Sum_probs=82.3

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeec-CCCCCccccEEEEEeeCCCCCc
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKK-NSYNPVWNEQIIFSEMFPPLCS  152 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~-~~~nP~wne~~~f~~~~p~~~~  152 (191)
                      ..+.|.|+|++|++|+.++.              .+.+||||++.+.+.+.+|++++ ++.||.|||+|.|.+..  ...
T Consensus         8 ~~~~L~v~v~~a~~L~~~d~--------------~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~--~~~   71 (136)
T 1wfj_A            8 PHGTLEVVLVSAKGLEDADF--------------LNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE--GTT   71 (136)
T ss_dssp             CEEEEEEEEEEEEECSSCCS--------------SCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEES--SCC
T ss_pred             CcEEEEEEEEeccCCCCccc--------------CCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECC--CCC
Confidence            57899999999999998873              36789999999999999999998 89999999999999864  345


Q ss_pred             eEEEEEEECCCCC-CceEEEEEeecccccc
Q psy13645        153 RIKIQLRDNDPVN-NTVIGTHYIDLKNISN  181 (191)
Q Consensus       153 ~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~  181 (191)
                      .|.|+|||++..+ |++||++.++|+++..
T Consensus        72 ~l~~~V~d~~~~~~d~~lG~~~i~l~~l~~  101 (136)
T 1wfj_A           72 ELKAKIFDKDVGTEDDAVGEATIPLEPVFV  101 (136)
T ss_dssp             EEEEEECCSSSCTTTCCSEEEEEESHHHHH
T ss_pred             EEEEEEEECCCCCCCceEEEEEEEHHHhcc
Confidence            6999999999987 9999999999999844

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.77  E-value=1.1e-18  Score=125.32  Aligned_cols=102  Identities=24%  Similarity=0.387  Sum_probs=85.1

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEEC---CeeeeeeeecCCCCCccccEEEEEeeCCCC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFA---GLTGKTSVKKNSYNPVWNEQIIFSEMFPPL  150 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~---~~~~kT~~~~~~~nP~wne~~~f~~~~p~~  150 (191)
                      ....|.|+|++|++|+.++.              .+.+||||++.+.   ..+.+|++++++.||.|||+|.|.+..+.+
T Consensus        32 ~~~~L~v~v~~a~~L~~~d~--------------~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l   97 (143)
T 3f04_A           32 QNNQLLVGIIQAAELPALDM--------------GGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL   97 (143)
T ss_dssp             TTTEEEEEEEEEECCCCBGG--------------GBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHH
T ss_pred             CCCEEEEEEEEecCCCCCCC--------------CCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhc
Confidence            45789999999999998774              3668999999993   448999999999999999999999754332


Q ss_pred             -CceEEEEEEECCCCC-CceEEEEEeeccccccCCC-CCccc
Q psy13645        151 -CSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDY  189 (191)
Q Consensus       151 -~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p  189 (191)
                       ...|.|+|||++..+ +++||++.++|.++..+.. +.|++
T Consensus        98 ~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~  139 (143)
T 3f04_A           98 GGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRD  139 (143)
T ss_dssp             TTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTSCEEEEEE
T ss_pred             CCCEEEEEEEeCCCCCCCceEEEEEEEHHHccCCCCcceEEE
Confidence             246999999999987 9999999999999976543 56665

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.77  E-value=7.6e-19  Score=127.80  Aligned_cols=101  Identities=20%  Similarity=0.317  Sum_probs=84.5

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEeeCC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSEMFP  148 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~~~p  148 (191)
                      ....|.|+|++|++|+.++               .+.+||||++.+.+     .+.+|++++++.||.|||+|.|.+...
T Consensus        25 ~~~~L~V~v~~a~~L~~~d---------------~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~   89 (153)
T 3fbk_A           25 QDRVLLLHIIEGKGLISKQ---------------PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEE   89 (153)
T ss_dssp             SSSEEEEEEEEEESCCCCS---------------SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGG
T ss_pred             CCCEEEEEEEEeeCCCCCC---------------CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccH
Confidence            5678999999999999876               26689999999843     378999999999999999999997545


Q ss_pred             CCCceEEEEEEECCCCC--CceEEEEEeecccccc--CCCCCccc
Q psy13645        149 PLCSRIKIQLRDNDPVN--NTVIGTHYIDLKNISN--DGDKGKDY  189 (191)
Q Consensus       149 ~~~~~l~i~v~d~d~~~--d~~iG~~~l~l~~i~~--~~~~g~~p  189 (191)
                      .....|.|+|||++..+  +++||++.++|.++..  ...++|++
T Consensus        90 ~~~~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~  134 (153)
T 3fbk_A           90 DDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYY  134 (153)
T ss_dssp             GTTSEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEE
T ss_pred             HhCCEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEE
Confidence            55566999999999863  8999999999999976  22256665

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.77  E-value=2.2e-19  Score=129.89  Aligned_cols=102  Identities=18%  Similarity=0.263  Sum_probs=84.0

Q ss_pred             ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645         75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSEMFPP  149 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~~~p~  149 (191)
                      ...|.|+|++|++|+.++.             ..+.+||||++.+.+     .+.+|++++++.||.|||.|.|.+....
T Consensus        22 ~~~L~V~v~~a~~L~~~d~-------------~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~   88 (148)
T 3fdw_A           22 TQSLVVHVKECHQLAYADE-------------AKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESL   88 (148)
T ss_dssp             TTEEEEEEEEEESCCCSBT-------------TTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTT
T ss_pred             CCEEEEEEEEecCCCCccc-------------CCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhH
Confidence            4689999999999998772             146789999999863     3889999999999999999999975544


Q ss_pred             C-CceEEEEEEECCCCC-CceEEEEEeeccccccCC-CCCccc
Q psy13645        150 L-CSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDG-DKGKDY  189 (191)
Q Consensus       150 ~-~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~-~~g~~p  189 (191)
                      + ...|.|+|||++..+ +++||++.++|+++..+. .+.|+|
T Consensus        89 ~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~  131 (148)
T 3fdw_A           89 LAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLP  131 (148)
T ss_dssp             GGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEE
T ss_pred             hCceEEEEEEEECCCCcCCcEEEEEEEEcccccccCCccceEE
Confidence            3 245999999999987 999999999999986543 355654

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.76  E-value=5.8e-19  Score=126.67  Aligned_cols=97  Identities=29%  Similarity=0.493  Sum_probs=82.1

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEE-eeC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFS-EMF  147 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~-~~~  147 (191)
                      ....|.|+|++|++|+.++.              .+.+||||++.+.+     .+.+|++++++.||.|||.|.|. +..
T Consensus        27 ~~~~L~V~v~~a~~L~~~d~--------------~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~   92 (142)
T 2chd_A           27 DNSNLQCTIIRAKGLKPMDS--------------NGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITE   92 (142)
T ss_dssp             GGTEEEEEEEEEESCCCCCT--------------TSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCH
T ss_pred             CCCEEEEEEEEecCCCCCCC--------------CCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCH
Confidence            45789999999999998874              46789999999976     58999999999999999999998 432


Q ss_pred             CCC-CceEEEEEEECCCCC-CceEEEEEeeccccccCCC
Q psy13645        148 PPL-CSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD  184 (191)
Q Consensus       148 p~~-~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~  184 (191)
                      ..+ ...|.|+|||++..+ +++||++.++|+++..++.
T Consensus        93 ~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~  131 (142)
T 2chd_A           93 EDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQR  131 (142)
T ss_dssp             HHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCC
T ss_pred             HHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCc
Confidence            222 146999999999988 8999999999999976554

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.76  E-value=4.6e-18  Score=126.38  Aligned_cols=95  Identities=24%  Similarity=0.412  Sum_probs=76.7

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC------eeeeeeeecCCCCCccccEEEEEeeC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG------LTGKTSVKKNSYNPVWNEQIIFSEMF  147 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~------~~~kT~~~~~~~nP~wne~~~f~~~~  147 (191)
                      ..+.|.|+|++|++|+.++.              .+.+||||++.+.+      .+.+|++++++.||.|||.|.|.+..
T Consensus         6 ~~g~L~V~v~~a~~L~~~d~--------------~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~   71 (176)
T 3m7f_B            6 DTRVVRVKVIAGIGLAKKDI--------------LGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLP   71 (176)
T ss_dssp             TCEEEEEEEEEEESCC---C--------------CCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECT
T ss_pred             CcEEEEEEEEEeeCCCCcCC--------------CCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcC
Confidence            45899999999999998773              46789999999976      57899999999999999999999753


Q ss_pred             CCCCceEEEEEEECCCCC-CceEEEEEeeccccccCCC
Q psy13645        148 PPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD  184 (191)
Q Consensus       148 p~~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~  184 (191)
                        ....|.|+|||++..+ +++||++.++|..+...+.
T Consensus        72 --~~~~L~~~V~d~d~~~~d~~lG~~~i~l~~l~~~~~  107 (176)
T 3m7f_B           72 --QRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENP  107 (176)
T ss_dssp             --TTCEEEEEEEECC----CEEEEEEEEESCSCCBC--
T ss_pred             --CCCEEEEEEEECCCCCCCcEEEEEEEEHHHccccCC
Confidence              2356999999999987 9999999999999977543

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.75  E-value=6.7e-18  Score=119.67  Aligned_cols=89  Identities=20%  Similarity=0.315  Sum_probs=77.7

Q ss_pred             ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC--eeeeeeeecCCCCCccccEEEEEeeCCCCCc
Q psy13645         75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG--LTGKTSVKKNSYNPVWNEQIIFSEMFPPLCS  152 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~  152 (191)
                      ...|+|+|++|++|+.+|.              .+.+||||++.+.+  ...+|++++++.||.|||+|.|.+..+.   
T Consensus         4 ~~~L~V~v~~a~~L~~~d~--------------~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~---   66 (132)
T 3pyc_A            4 FIKIRLTVLCAKNLAKKDF--------------FRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTD---   66 (132)
T ss_dssp             EEEEEEEEEEEESCCCCST--------------TCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETTC---
T ss_pred             eEEEEEEEEEeECCCCCCC--------------CCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCCC---
Confidence            4679999999999998874              36789999999975  6899999999999999999999986442   


Q ss_pred             eEEEEEEECCCCC----CceEEEEEeeccccc
Q psy13645        153 RIKIQLRDNDPVN----NTVIGTHYIDLKNIS  180 (191)
Q Consensus       153 ~l~i~v~d~d~~~----d~~iG~~~l~l~~i~  180 (191)
                      .|.|+|||++..+    |++||++.++++.|.
T Consensus        67 ~l~~~v~d~d~~~~~~~d~~lG~~~i~l~~l~   98 (132)
T 3pyc_A           67 SITISVWNHKKIHKKQGAGFLGCVRLLSNAIS   98 (132)
T ss_dssp             CEEEEEEEGGGTTSSTTTTEEEEEEECHHHHH
T ss_pred             EEEEEEEECCCCCCCCCCCceEEEEEeHHHhh
Confidence            4999999999875    699999999998883

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.75  E-value=4.8e-19  Score=127.04  Aligned_cols=100  Identities=24%  Similarity=0.379  Sum_probs=82.9

Q ss_pred             eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe--------------eeeeeeecCCCCCccccEE
Q psy13645         76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL--------------TGKTSVKKNSYNPVWNEQI  141 (191)
Q Consensus        76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~--------------~~kT~~~~~~~nP~wne~~  141 (191)
                      +.|.|+|++|++|+.++.              .+.+||||++.+.+.              +.+|++++++.||.|||+|
T Consensus        18 ~~L~V~v~~a~~L~~~d~--------------~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f   83 (142)
T 1rh8_A           18 GNLIIHILQARNLVPRDN--------------NGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTV   83 (142)
T ss_dssp             TEEEEEEEEEESCCCCSS--------------SSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEE
T ss_pred             CEEEEEEEEecCCCCCCC--------------CCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEE
Confidence            579999999999998874              467899999999873              5789999999999999999


Q ss_pred             EEE-eeCCC-CCceEEEEEEECCCCC-CceEEEEEeeccccccCC-CCCccc
Q psy13645        142 IFS-EMFPP-LCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDG-DKGKDY  189 (191)
Q Consensus       142 ~f~-~~~p~-~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~-~~g~~p  189 (191)
                      .|. +.... ....|.|+|||++..+ +++||++.++|+++.... .+.|+|
T Consensus        84 ~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~  135 (142)
T 1rh8_A           84 IYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYP  135 (142)
T ss_dssp             EECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEE
T ss_pred             EECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEE
Confidence            997 43222 2346999999999987 999999999999986643 367766

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.75  E-value=1.7e-18  Score=123.88  Aligned_cols=101  Identities=24%  Similarity=0.380  Sum_probs=83.1

Q ss_pred             ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEEC-----CeeeeeeeecCCCCCccccEEEEEeeC-C
Q psy13645         75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFA-----GLTGKTSVKKNSYNPVWNEQIIFSEMF-P  148 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~-----~~~~kT~~~~~~~nP~wne~~~f~~~~-p  148 (191)
                      ...|.|+|++|++|+.++.              .+.+||||++.+.     ..+.+|++++++.||+|||.|.|.+.. .
T Consensus        20 ~~~L~v~v~~a~~L~~~d~--------------~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~   85 (141)
T 1v27_A           20 GHQLIVTILGAKDLPSRED--------------GRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRR   85 (141)
T ss_dssp             TTEEEEEEEEEESCCCCSS--------------SCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTT
T ss_pred             CCEEEEEEEEccCCCCcCC--------------CCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHH
Confidence            3689999999999998874              4678999999983     458999999999999999999998422 2


Q ss_pred             C-CCceEEEEEEECCCCC---CceEEEEEeeccccccCCCCCccc
Q psy13645        149 P-LCSRIKIQLRDNDPVN---NTVIGTHYIDLKNISNDGDKGKDY  189 (191)
Q Consensus       149 ~-~~~~l~i~v~d~d~~~---d~~iG~~~l~l~~i~~~~~~g~~p  189 (191)
                      . ....|.|+|||++..+   +++||++.++|.++...+.+.|+|
T Consensus        86 ~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~~~~W~~  130 (141)
T 1v27_A           86 EFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHWYK  130 (141)
T ss_dssp             GGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSSEEEEEE
T ss_pred             HhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCCCCceEE
Confidence            2 1246999999999875   799999999999987655556665

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.74  E-value=5.1e-18  Score=124.97  Aligned_cols=92  Identities=26%  Similarity=0.409  Sum_probs=80.0

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEeeCC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSEMFP  148 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~~~p  148 (191)
                      ....|.|+|++|++|+.++.              .+.+||||++.+.+     .+.+|++++++.||+|||.|.|.+..+
T Consensus        35 ~~~~L~V~v~~a~~L~~~d~--------------~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~  100 (166)
T 2cm5_A           35 QQGGLIVGIIRCVHLAAMDA--------------NGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHS  100 (166)
T ss_dssp             TTTEEEEEEEEEESCCCCST--------------TSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGG
T ss_pred             CCCEEEEEEEEeECCCCccC--------------CCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchH
Confidence            35689999999999998874              46789999999976     489999999999999999999997544


Q ss_pred             CC-CceEEEEEEECCCCC-CceEEEEEeecccc
Q psy13645        149 PL-CSRIKIQLRDNDPVN-NTVIGTHYIDLKNI  179 (191)
Q Consensus       149 ~~-~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i  179 (191)
                      .+ ...|.|+|||++..+ +++||++.++|.++
T Consensus       101 ~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~  133 (166)
T 2cm5_A          101 DLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK  133 (166)
T ss_dssp             GGGGCEEEEEEEECCSSSCCEEEEEEEEETTCC
T ss_pred             hcCCCEEEEEEEECCCCCCCcEEEeEEEecccC
Confidence            43 346999999999987 99999999999985

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.74  E-value=1e-17  Score=119.65  Aligned_cols=97  Identities=23%  Similarity=0.425  Sum_probs=81.1

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC---eeeeeeeecCCCCCccccEEEEE-eeCCC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG---LTGKTSVKKNSYNPVWNEQIIFS-EMFPP  149 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~~~nP~wne~~~f~-~~~p~  149 (191)
                      ....|.|+|++|++|+.++.             ..+.+||||++.+.+   .+.+|++++++.||+|||+|.|. +....
T Consensus        20 ~~~~L~v~v~~a~~L~~~d~-------------~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~   86 (138)
T 1ugk_A           20 ERKAFVVNIKEARGLPAMDE-------------QSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQ   86 (138)
T ss_dssp             GGTEEEEEEEEEESCCCCBT-------------TTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTT
T ss_pred             CCCEEEEEEEEeeCCCCCCC-------------CCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHH
Confidence            35689999999999998873             026689999999964   58999999999999999999996 54333


Q ss_pred             CC-ceEEEEEEECCCCC-CceEEEEEeeccccccCC
Q psy13645        150 LC-SRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDG  183 (191)
Q Consensus       150 ~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~  183 (191)
                      +. ..|.|+|||++..+ +++||++.++|+++..+.
T Consensus        87 ~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~  122 (138)
T 1ugk_A           87 IQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSE  122 (138)
T ss_dssp             GGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTT
T ss_pred             hccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCC
Confidence            32 46999999999987 999999999999997643

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.74  E-value=2.6e-18  Score=123.22  Aligned_cols=100  Identities=19%  Similarity=0.309  Sum_probs=81.5

Q ss_pred             ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645         75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSEMFPP  149 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~~~p~  149 (191)
                      ...|.|+|++|++|+.++.              .+ +||||++.+.+     .+.+|++++++.||+|||+|.|.+....
T Consensus        23 ~~~L~v~v~~a~~L~~~d~--------------~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~   87 (142)
T 2dmg_A           23 RNKLIVVVHACRNLIAFSE--------------DG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPE   87 (142)
T ss_dssp             TTEEEEEEEEEECCCCSST--------------TC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHH
T ss_pred             CCEEEEEEEEeECCCCCCC--------------CC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHH
Confidence            4689999999999998874              35 99999999953     4789999999999999999999964322


Q ss_pred             CC-ceEEEEEEECCCCC---CceEEEEEeeccccccC-CCCCccc
Q psy13645        150 LC-SRIKIQLRDNDPVN---NTVIGTHYIDLKNISND-GDKGKDY  189 (191)
Q Consensus       150 ~~-~~l~i~v~d~d~~~---d~~iG~~~l~l~~i~~~-~~~g~~p  189 (191)
                      +. ..|.|+|||++..+   +++||++.++|.++..+ ..+.|++
T Consensus        88 l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~  132 (142)
T 2dmg_A           88 VQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYD  132 (142)
T ss_dssp             HHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCC
T ss_pred             hCcCEEEEEEEECCCccccCCcEEEEEEEecccccccccccceee
Confidence            22 36999999999864   36999999999998654 3367765

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.73  E-value=1.8e-17  Score=123.03  Aligned_cols=91  Identities=19%  Similarity=0.344  Sum_probs=78.5

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCce
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSR  153 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~  153 (191)
                      ....|.|+|++|++|+..+.              .+.+||||++.+++.+.+|+++++++||+|||+|.|.+. +  ...
T Consensus        34 ~~~~L~V~V~~A~~L~~~~~--------------~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~-~--~~~   96 (173)
T 2nq3_A           34 MKSQLQITVISAKLKENKKN--------------WFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT-P--VSK   96 (173)
T ss_dssp             CCEEEEEEEEEEEECCCC----------------CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEEC-T--TCE
T ss_pred             CceEEEEEEEEeECCCCccc--------------CCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeC-C--CCE
Confidence            35789999999999984332              233899999999999999999999999999999999873 3  566


Q ss_pred             EEEEEEECCCCC-CceEEEEEeecccccc
Q psy13645        154 IKIQLRDNDPVN-NTVIGTHYIDLKNISN  181 (191)
Q Consensus       154 l~i~v~d~d~~~-d~~iG~~~l~l~~i~~  181 (191)
                      |.|+|||++..+ +++||++.++|.++..
T Consensus        97 L~~~V~D~d~~~~dd~lG~~~i~l~~l~~  125 (173)
T 2nq3_A           97 LHFRVWSHQTLKSDVLLGTAALDIYETLK  125 (173)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEEEHHHHHH
T ss_pred             EEEEEEECCCCCCCceEEEEEEEHHHhcc
Confidence            999999999987 9999999999999865

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.73  E-value=8.4e-18  Score=124.51  Aligned_cols=100  Identities=19%  Similarity=0.322  Sum_probs=82.3

Q ss_pred             ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-----eeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645         75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-----TGKTSVKKNSYNPVWNEQIIFSEMFPP  149 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~~~nP~wne~~~f~~~~p~  149 (191)
                      ...|.|+|++|++|+.++..             .+.+||||++.+.+.     +.+|++++++.||+|||+|.|.+..  
T Consensus        29 ~~~L~V~v~~a~~L~~~d~~-------------~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~--   93 (171)
T 2q3x_A           29 KGQLEVEVIRARSLTQKPGS-------------KSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESP--   93 (171)
T ss_dssp             TTEEEEEEEEEESCCCCC----------------CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCC--
T ss_pred             CCEEEEEEEEeeCCCCCCcC-------------CCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecC--
Confidence            46899999999999988731             367899999998642     7899999999999999999999742  


Q ss_pred             CCceEEEEEE-ECCCCC-CceEEEEEeeccccccCC-CCCccc
Q psy13645        150 LCSRIKIQLR-DNDPVN-NTVIGTHYIDLKNISNDG-DKGKDY  189 (191)
Q Consensus       150 ~~~~l~i~v~-d~d~~~-d~~iG~~~l~l~~i~~~~-~~g~~p  189 (191)
                      ....|.|+|| |++..+ +++||++.++|+++..+. .++|++
T Consensus        94 ~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~  136 (171)
T 2q3x_A           94 QGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYK  136 (171)
T ss_dssp             TTEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTSCEEEEEE
T ss_pred             CCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCCCcceeEE
Confidence            3456999999 999988 999999999999997433 356655

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.73  E-value=1.3e-17  Score=121.97  Aligned_cols=92  Identities=28%  Similarity=0.516  Sum_probs=78.6

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEeeCC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSEMFP  148 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~~~p  148 (191)
                      ..+.|.|+|++|++|+.++.              .+.+||||++.+.+     .+.+|++++++.||.|||+|.|.+..+
T Consensus        23 ~~~~L~V~v~~a~~L~~~d~--------------~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~   88 (159)
T 1tjx_A           23 TAGKLTVVILEAKNLKKMDV--------------GGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE   88 (159)
T ss_dssp             TTTEEEEEEEEEESCCCCST--------------TSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGG
T ss_pred             CCCEEEEEEEEeeCCCCccC--------------CCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHH
Confidence            35689999999999998874              46789999999863     378999999999999999999997554


Q ss_pred             CCC-ceEEEEEEECCCCC-CceEEEEEeecccc
Q psy13645        149 PLC-SRIKIQLRDNDPVN-NTVIGTHYIDLKNI  179 (191)
Q Consensus       149 ~~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i  179 (191)
                      .+. ..|.|+|||++..+ +++||++.+++..+
T Consensus        89 ~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~  121 (159)
T 1tjx_A           89 QIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST  121 (159)
T ss_dssp             GGGGCEEEEEEEECCSSSCCEEEEEEEEETTCC
T ss_pred             HhCCcEEEEEEEECCCCCCCceEEEEEECCCCC
Confidence            433 46999999999987 99999999999853

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.73  E-value=6.8e-18  Score=122.58  Aligned_cols=91  Identities=29%  Similarity=0.399  Sum_probs=74.5

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEEC--Ce---eeeeeeecCCCCCccccEEEEEeeCC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFA--GL---TGKTSVKKNSYNPVWNEQIIFSEMFP  148 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~~---~~kT~~~~~~~nP~wne~~~f~~~~p  148 (191)
                      ....|.|+|++|++|+.++.              .+.+||||++.+.  +.   +.+|++++++.||.|||+|.|.+..+
T Consensus        28 ~~~~L~v~v~~a~~L~~~d~--------------~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~   93 (153)
T 1w15_A           28 TTNTLTVVVLKARHLPKSDV--------------SGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCE   93 (153)
T ss_dssp             TTTEEEEEEEEEESCC--------------------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSS
T ss_pred             CCCEEEEEEEEeECCCCcCC--------------CCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHH
Confidence            35689999999999998874              3568999999994  33   67999999999999999999997655


Q ss_pred             CCC-ceEEEEEEECCCCC-CceEEEEEeeccc
Q psy13645        149 PLC-SRIKIQLRDNDPVN-NTVIGTHYIDLKN  178 (191)
Q Consensus       149 ~~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~  178 (191)
                      .+. ..|.|+|||++..+ +++||++.++|++
T Consensus        94 ~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~  125 (153)
T 1w15_A           94 SLEEISVEFLVLDSERGSRNEVIGRLVLGATA  125 (153)
T ss_dssp             SSTTEEEEEEEEECCTTSCCEEEEEEEESTTC
T ss_pred             HhCceEEEEEEEeCCCCCCCcEEEEEEECCCC
Confidence            443 46999999999987 9999999999988

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.73  E-value=1e-17  Score=119.32  Aligned_cols=92  Identities=33%  Similarity=0.447  Sum_probs=78.7

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEeeCC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSEMFP  148 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~~~p  148 (191)
                      ..+.|.|.|++|++|+.++.              .+.+||||++.+.+     .+.+|++++++.||.|||.|.|.+..+
T Consensus        14 ~~~~L~v~v~~a~~L~~~d~--------------~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~   79 (138)
T 3n5a_A           14 SANSIIVNIIKARNLKAMDI--------------GGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTE   79 (138)
T ss_dssp             TTTEEEEEEEEEESCCCCBT--------------TTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGG
T ss_pred             CCCeEEEEEEEeeCCCCcCC--------------CCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChh
Confidence            34689999999999998874              46789999999975     378999999999999999999997544


Q ss_pred             CCC-ceEEEEEEECCCCC-CceEEEEEeecccc
Q psy13645        149 PLC-SRIKIQLRDNDPVN-NTVIGTHYIDLKNI  179 (191)
Q Consensus       149 ~~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i  179 (191)
                      .+. ..|.|+|||++..+ +++||++.++|.++
T Consensus        80 ~l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~  112 (138)
T 3n5a_A           80 KLRETTIIITVMDKDKLSRNDVIGKIYLSWKSG  112 (138)
T ss_dssp             GGGGEEEEEEEEECCSSSCCEEEEEEEESSSSC
T ss_pred             hcCceEEEEEEEECCCCCCCcEEEEEEEccccC
Confidence            432 35999999999987 99999999999874

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.72  E-value=2.5e-17  Score=117.78  Aligned_cols=99  Identities=24%  Similarity=0.297  Sum_probs=80.0

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC---e-eeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG---L-TGKTSVKKNSYNPVWNEQIIFSEMFPP  149 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---~-~~kT~~~~~~~nP~wne~~~f~~~~p~  149 (191)
                      ....|.|+|++|++   ++.              .+.+||||++.+.+   . +.+|+++++++||+|||.|.|.+....
T Consensus        24 ~~~~L~V~v~~a~~---~d~--------------~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~   86 (138)
T 1wfm_A           24 QKAELFVTRLEAVT---SNH--------------DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEE   86 (138)
T ss_dssp             TTTEEEEEEEEEEC---CCC--------------SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTS
T ss_pred             CCCEEEEEEEEEEc---CCC--------------CCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHH
Confidence            34689999999993   442              46789999999943   2 689999999999999999999976544


Q ss_pred             CC-ceEEEEEEECCCCC-CceEEEEEeeccccccC-CCCCccc
Q psy13645        150 LC-SRIKIQLRDNDPVN-NTVIGTHYIDLKNISND-GDKGKDY  189 (191)
Q Consensus       150 ~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~-~~~g~~p  189 (191)
                      +. ..|.|+|||+|..+ +++||++.++|.++..+ ..+.|++
T Consensus        87 l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~  129 (138)
T 1wfm_A           87 LPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGE  129 (138)
T ss_dssp             STTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEE
T ss_pred             cCCCEEEEEEEECCCCCCCcEEEEEEEEcccccCcccccceee
Confidence            43 46999999999988 99999999999999643 3356654

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.72  E-value=4.1e-17  Score=115.82  Aligned_cols=92  Identities=16%  Similarity=0.322  Sum_probs=74.8

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeec-CCCCCccccEEEEEeeCCCCCc
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKK-NSYNPVWNEQIIFSEMFPPLCS  152 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~-~~~nP~wne~~~f~~~~p~~~~  152 (191)
                      .++.|.|+|.+|++++.                 .+.+||||+++  ++..+|++++ ++.||.|||+|.|.+..  ...
T Consensus         3 ~~~~L~V~V~~A~~l~~-----------------~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~--~~~   61 (131)
T 2cjt_A            3 VMSLLCVGVKKAKFDGA-----------------QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINR--LDL   61 (131)
T ss_dssp             CCEEEEEEEEEEECSSC-----------------GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECC--CSS
T ss_pred             cceEEEEEEEEeECCCC-----------------CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeC--CCC
Confidence            35789999999998852                 24589999999  4455666665 69999999999999753  345


Q ss_pred             eEEEEEEECCCCC-CceEEEEEeeccccccCCCCCc
Q psy13645        153 RIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKGK  187 (191)
Q Consensus       153 ~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~~g~  187 (191)
                      .|.|+|||+| .+ |++||++.++|+++...+.+||
T Consensus        62 ~L~~~V~D~d-~~~dd~iG~~~i~l~~l~~~~~~~~   96 (131)
T 2cjt_A           62 GLTVEVWNKG-LIWDTMVGTVWIPLRTIRQSNEEGP   96 (131)
T ss_dssp             EEEEEEEECC-SSCEEEEEEEEEEGGGSCBCSSCCC
T ss_pred             eEEEEEEECC-CCCCCeEEEEEEEHHHhhhcCCCCc
Confidence            6999999999 66 9999999999999977665554

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.72  E-value=4.7e-18  Score=122.65  Aligned_cols=106  Identities=21%  Similarity=0.326  Sum_probs=81.5

Q ss_pred             ceEEEEEEEEecCCCC-CChHHHHhhhhhhcCCCCCccCcEEEEEECC---eeeeeeeecCCCCCccccEEEEEeeCCCC
Q psy13645         75 HARFIIRIYRADGLPK-MNSSLVANVKKAFTGETKDLVDPYVQVSFAG---LTGKTSVKKNSYNPVWNEQIIFSEMFPPL  150 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~-~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~~~nP~wne~~~f~~~~p~~  150 (191)
                      ...|.|+|++|++|+. ++..-        .....+.+||||++.+.+   .+.+|++++++.||+|||+|.|.+..+.+
T Consensus        25 ~~~L~V~v~~a~~L~~~~d~~g--------~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l   96 (147)
T 2enp_A           25 HNHLTVRVIEARDLPPPISHDG--------SRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEA   96 (147)
T ss_dssp             TTEEEEEEEEEECCCCSCSSCC--------SSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHH
T ss_pred             CCEEEEEEEEEeCCCCcccccc--------ccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHh
Confidence            4689999999999997 34200        000125689999999963   48899999999999999999998643222


Q ss_pred             C-ceEEEEEEECCCCC-CceEEEEEeeccccccCCC-CCcc
Q psy13645        151 C-SRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKD  188 (191)
Q Consensus       151 ~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~  188 (191)
                      . ..|.|+|||++..+ +++||++.++|.++..... ..|+
T Consensus        97 ~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~  137 (147)
T 2enp_A           97 QRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWK  137 (147)
T ss_dssp             HHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEE
T ss_pred             ccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEE
Confidence            2 46999999999988 9999999999999865443 3343

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.70  E-value=3.3e-16  Score=124.36  Aligned_cols=91  Identities=30%  Similarity=0.553  Sum_probs=78.2

Q ss_pred             ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEEC--C---eeeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645         75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFA--G---LTGKTSVKKNSYNPVWNEQIIFSEMFPP  149 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~---~~~kT~~~~~~~nP~wne~~~f~~~~p~  149 (191)
                      .+.|.|.|++|++|+.++.              .+.+||||++.+.  +   .+.+|++++++.||.|||.|.|.+..+.
T Consensus       149 ~~~l~v~v~~a~~L~~~d~--------------~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~  214 (284)
T 2r83_A          149 AGKLTVVILEAKNLKKMDV--------------GGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQ  214 (284)
T ss_dssp             TTEEEEEEEEEESCCCCST--------------TSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTT
T ss_pred             CCceEEEEEEeECCCCcCC--------------CCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHH
Confidence            4689999999999998874              4678999999985  3   3679999999999999999999986555


Q ss_pred             CCc-eEEEEEEECCCCC-CceEEEEEeecccc
Q psy13645        150 LCS-RIKIQLRDNDPVN-NTVIGTHYIDLKNI  179 (191)
Q Consensus       150 ~~~-~l~i~v~d~d~~~-d~~iG~~~l~l~~i  179 (191)
                      +.. .|.|+|||++..+ +++||++.++++.+
T Consensus       215 l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~  246 (284)
T 2r83_A          215 IQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST  246 (284)
T ss_dssp             GGGEEEEEEEEECCSSSCCCEEEEEEEETTCC
T ss_pred             hCceEEEEEEEeCCCCCCCcEEEEEEECCCCC
Confidence            543 5999999999988 99999999999864

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.68  E-value=1e-16  Score=139.92  Aligned_cols=96  Identities=29%  Similarity=0.535  Sum_probs=83.0

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecCC-CCCccccEEEEEeeC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKNS-YNPVWNEQIIFSEMF  147 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~-~nP~wne~~~f~~~~  147 (191)
                      ....|+|+|++|++|+.++.            ...+.+||||+|.+.|     .+.+|++++++ +||+|||+|.|.+..
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~------------~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~  562 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNK------------NKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTV  562 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSS------------CSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESC
T ss_pred             cceEEEEEEEEcCCCCcccc------------cccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEec
Confidence            45789999999999998772            0146789999999966     48899999987 999999999999887


Q ss_pred             CCCCceEEEEEEECCCCC-CceEEEEEeeccccccC
Q psy13645        148 PPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISND  182 (191)
Q Consensus       148 p~~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~  182 (191)
                      |... .|+|+|||+|..+ +++||++.++|..|..+
T Consensus       563 ~el~-~L~~~V~D~D~~~~dd~iG~~~ipl~~L~~G  597 (624)
T 1djx_A          563 PDLA-LVRFMVEDYDSSSKNDFIGQSTIPWNSLKQG  597 (624)
T ss_dssp             GGGC-EEEEEEEECCSSSCCEEEEEEEEEGGGBCCE
T ss_pred             CCCC-EEEEEEEEcCCCCCCceeEEEEEEHHHcCCC
Confidence            7654 5999999999987 99999999999999764

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.67  E-value=1.2e-16  Score=126.90  Aligned_cols=100  Identities=23%  Similarity=0.394  Sum_probs=83.6

Q ss_pred             ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC---eeeeeeeecCCCCCccccEEEEEeeCCCC-
Q psy13645         75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG---LTGKTSVKKNSYNPVWNEQIIFSEMFPPL-  150 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~~~nP~wne~~~f~~~~p~~-  150 (191)
                      ...|.|+|++|++|+.++.              .+.+||||++.+.+   ...+|++++++.||.|||+|.|.+..+.+ 
T Consensus        18 ~~~L~v~v~~a~~L~~~d~--------------~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~   83 (284)
T 2r83_A           18 NNQLLVGIIQAAELPALDM--------------GGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELA   83 (284)
T ss_dssp             TTEEEEEEEEEECCCCCSS--------------SSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCT
T ss_pred             CCEEEEEEEEeeCCCCCCC--------------CCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhC
Confidence            4689999999999998874              46789999999964   37899999999999999999999755443 


Q ss_pred             CceEEEEEEECCCCC-CceEEEEEeeccccccCCC-CCcc
Q psy13645        151 CSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKD  188 (191)
Q Consensus       151 ~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~  188 (191)
                      ...|.|+|||++..+ +++||++.++|.++..+.. +.|+
T Consensus        84 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~  123 (284)
T 2r83_A           84 GKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWR  123 (284)
T ss_dssp             TCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSSCEEEEE
T ss_pred             cCEEEEEEEECCCCCCCceeEEEEEcchhcccCCcceeEE
Confidence            356999999999987 9999999999999866433 3444

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.67  E-value=3.5e-16  Score=115.42  Aligned_cols=91  Identities=15%  Similarity=0.322  Sum_probs=74.8

Q ss_pred             ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeec-CCCCCccccEEEEEeeCCCCCce
Q psy13645         75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKK-NSYNPVWNEQIIFSEMFPPLCSR  153 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~-~~~nP~wne~~~f~~~~p~~~~~  153 (191)
                      .+.|.|+|.+|++++.                 .+.+||||+++  ++..+|++++ ++.||.|||+|.|.+..  ....
T Consensus        13 ~~~L~V~V~~A~~l~~-----------------~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~--~~~~   71 (167)
T 2cjs_A           13 LSLLCVGVKKAKFDGA-----------------QEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINR--LDLG   71 (167)
T ss_dssp             CCEEEEEEEEEECSSC-----------------GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCC--TTSE
T ss_pred             eEEEEEEEEEEECCCC-----------------CCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeC--CCCE
Confidence            5799999999998852                 24589999999  4556777776 59999999999999753  3456


Q ss_pred             EEEEEEECCCCC-CceEEEEEeeccccccCCCCCc
Q psy13645        154 IKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKGK  187 (191)
Q Consensus       154 l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~~g~  187 (191)
                      |.|+|||+| .+ |++||++.++|+++...+.+||
T Consensus        72 L~~~V~D~d-~~~dd~iG~~~i~L~~l~~~~~~g~  105 (167)
T 2cjs_A           72 LTVEVWNKG-LIWDTMVGTVWIPLRTIRQSNEEGP  105 (167)
T ss_dssp             EEEEEEECC-SSCCEEEEEEEEEGGGSCBCSSCCC
T ss_pred             EEEEEEECC-CCCCceEEEEEEEHHHhcccCcCCc
Confidence            999999999 66 9999999999999977665553

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.66  E-value=6e-16  Score=132.78  Aligned_cols=90  Identities=22%  Similarity=0.367  Sum_probs=78.6

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCce
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSR  153 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~  153 (191)
                      ..+.|+|+|++|++|+. |.              .+.+||||+|.+++.+.+|+++++++||+|||.|.|.+........
T Consensus       392 ~~~~L~V~V~~A~~L~~-D~--------------~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~  456 (540)
T 3nsj_A          392 GLAHLVVSNFRAEHLWG-DY--------------TTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGP  456 (540)
T ss_dssp             TEEEEEEEEEEEESCCC-SS--------------CSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCC
T ss_pred             cccEEEEEEEEccCCCc-cc--------------CCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCE
Confidence            47899999999999987 63              4679999999999999999999999999999999998542223556


Q ss_pred             EEEEEEECCCCC-CceEEEEEeeccc
Q psy13645        154 IKIQLRDNDPVN-NTVIGTHYIDLKN  178 (191)
Q Consensus       154 l~i~v~d~d~~~-d~~iG~~~l~l~~  178 (191)
                      |+|+|||+|..+ ||+||++.++|..
T Consensus       457 L~~~V~D~D~~~~dD~LG~~~~~L~~  482 (540)
T 3nsj_A          457 LRVQVWDADYGWDDDLLGSCDRSPHS  482 (540)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEECCCS
T ss_pred             EEEEEEECCCCCCCCEEEEEEEEeeC
Confidence            999999999987 8999999999873

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.62  E-value=2e-15  Score=120.79  Aligned_cols=93  Identities=27%  Similarity=0.500  Sum_probs=78.0

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEE---CCeeeeeeeecCCCCCccccEEEEEeeCCCC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF---AGLTGKTSVKKNSYNPVWNEQIIFSEMFPPL  150 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~---~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~  150 (191)
                      ....|.|+|++|++|+.++.              .+.+||||++.+   +..+.+|++++++.||.|||+|.|.+..+.+
T Consensus        18 ~~~~L~v~v~~a~~L~~~d~--------------~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l   83 (296)
T 1dqv_A           18 GSDQLVVRILQALDLPAKDS--------------NGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAEL   83 (296)
T ss_dssp             SSCEEEEEEEEEECCCCCST--------------TSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGG
T ss_pred             CCCEEEEEEEEeECCCCcCC--------------CCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHh
Confidence            35689999999999998874              467899999999   3458899999999999999999999754443


Q ss_pred             C-ceEEEEEEECCCCC-CceEEEEEee-ccccc
Q psy13645        151 C-SRIKIQLRDNDPVN-NTVIGTHYID-LKNIS  180 (191)
Q Consensus       151 ~-~~l~i~v~d~d~~~-d~~iG~~~l~-l~~i~  180 (191)
                      . ..|.|+|||+|..+ +++||++.++ +.++.
T Consensus        84 ~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~  116 (296)
T 1dqv_A           84 AQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELA  116 (296)
T ss_dssp             SSCCCEEEEEECCSSSCCCEEEEEECCCTTGGG
T ss_pred             cCCEEEEEEEEcCCCCCCceEEEEEeccccccc
Confidence            3 35999999999988 9999999996 54444

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.62  E-value=1.8e-15  Score=107.35  Aligned_cols=89  Identities=18%  Similarity=0.212  Sum_probs=78.4

Q ss_pred             eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeec-CCCCCccccEEEEEeeCCCCC-ce
Q psy13645         76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKK-NSYNPVWNEQIIFSEMFPPLC-SR  153 (191)
Q Consensus        76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~-~~~nP~wne~~~f~~~~p~~~-~~  153 (191)
                      --|+|.|.+|.+||                   +..|||+++.+-|.+.+|++++ ++.||+|||.|.|++.-|... +.
T Consensus        21 msL~V~l~~a~~Lp-------------------g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~   81 (144)
T 3l9b_A           21 MALIVHLKTVSELR-------------------GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEV   81 (144)
T ss_dssp             EEEEEEEEEEESCC-------------------SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCE
T ss_pred             EEEEEEEEEecCCC-------------------CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCE
Confidence            46999999999998                   3479999999999999999998 699999999999998654433 56


Q ss_pred             EEEEEEECCCCC-CceEEEEEeeccccccCC
Q psy13645        154 IKIQLRDNDPVN-NTVIGTHYIDLKNISNDG  183 (191)
Q Consensus       154 l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~  183 (191)
                      |.|.|+|+++.+ +++||++.++|+++...+
T Consensus        82 L~v~V~d~~~v~~nrlIG~~~i~Lq~lv~~~  112 (144)
T 3l9b_A           82 LEIQIFNYSKVFSNKLIGTFRMVLQKVVEEN  112 (144)
T ss_dssp             EEEEEEEECTTSCCEEEEEEEEESHHHHHHS
T ss_pred             EEEEEEECccccCCCEEEEEEEEhHHhccCC
Confidence            999999999998 999999999999886654

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.61  E-value=3.5e-15  Score=127.44  Aligned_cols=94  Identities=19%  Similarity=0.310  Sum_probs=82.8

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCce
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSR  153 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~  153 (191)
                      ..+.|.|+|++|++|+.+|.              .+.+||||++.+++.+.+|++++++.||.|||+|.|.+..+. ...
T Consensus       385 ~~~~l~v~v~~a~~L~~~d~--------------~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~-~~~  449 (510)
T 3jzy_A          385 GIGRLMVHVIEATELKACKP--------------NGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLY-QDV  449 (510)
T ss_dssp             -CEEEEEEEEEEESCCCCST--------------TSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTT-TCE
T ss_pred             CCceEEEEeceeecCCCCCC--------------CCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCC-CCE
Confidence            35789999999999998874              467899999999999999999999999999999999985443 346


Q ss_pred             EEEEEEECCCCC-CceEEEEEeeccccccC
Q psy13645        154 IKIQLRDNDPVN-NTVIGTHYIDLKNISND  182 (191)
Q Consensus       154 l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~  182 (191)
                      |.|+|||+|..+ |++||++.++|+++..+
T Consensus       450 l~~~v~d~d~~~~~d~lG~~~~~l~~l~~~  479 (510)
T 3jzy_A          450 LCLTLFDRDQFSPDDFLGRTEIPVAKIRTE  479 (510)
T ss_dssp             EEEEEEECCSSSSCCEEEEEEEEHHHHHHH
T ss_pred             EEEEEEeCCCCCCCCceEEEEEEHHHhccc
Confidence            999999999988 99999999999998653

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.58  E-value=1.9e-15  Score=120.92  Aligned_cols=92  Identities=30%  Similarity=0.479  Sum_probs=78.5

Q ss_pred             ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEEC--C---eeeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645         75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFA--G---LTGKTSVKKNSYNPVWNEQIIFSEMFPP  149 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~---~~~kT~~~~~~~nP~wne~~~f~~~~p~  149 (191)
                      .+.|.|.|++|++|+.++.              .+.+||||++++.  +   .+.+|++++++.||.|||.|.|.+..+.
T Consensus       151 ~~~l~v~v~~a~~L~~~d~--------------~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~  216 (296)
T 1dqv_A          151 AGLLTVTIIKASNLKAMDL--------------TGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPES  216 (296)
T ss_dssp             TTEEEEEEEEEESCCCCSS--------------SSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGG
T ss_pred             cceeEEEEEEeecCCccCC--------------CCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHH
Confidence            4689999999999998874              4668999999996  3   3789999999999999999999875544


Q ss_pred             CC-ceEEEEEEECCCCC-CceEEEEEeeccccc
Q psy13645        150 LC-SRIKIQLRDNDPVN-NTVIGTHYIDLKNIS  180 (191)
Q Consensus       150 ~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~  180 (191)
                      +. ..|.|+|||++..+ +++||.+.++++.+.
T Consensus       217 l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~  249 (296)
T 1dqv_A          217 VENVGLSIAVVDYDCIGHNEVIGVCRVGPEAAD  249 (296)
T ss_dssp             GGSCCCCCEEEECCSSSCCEEEEECCCSSCTTC
T ss_pred             ccCcEEEEEEEeCCCCCCCceEEEEEECCccCC
Confidence            33 25999999999988 999999999998764

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.57  E-value=4.9e-15  Score=130.98  Aligned_cols=101  Identities=24%  Similarity=0.305  Sum_probs=85.3

Q ss_pred             cceEEEEEEEEecCCCC---CChHHHHhhhhhhcCCCCCccCcEEEEEECC---eeeeeeeecCCCCCccccEEEEEeeC
Q psy13645         74 QHARFIIRIYRADGLPK---MNSSLVANVKKAFTGETKDLVDPYVQVSFAG---LTGKTSVKKNSYNPVWNEQIIFSEMF  147 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~---~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~~~nP~wne~~~f~~~~  147 (191)
                      +.+.|.|+|++|++|+.   +|.              .+.+||||++.+.+   .+.+|+++++++||+|||+|.|.+..
T Consensus        16 ~~g~L~V~Vi~A~nL~~~~~~D~--------------~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~   81 (749)
T 1cjy_A           16 YSHKFTVVVLRATKVTKGAFGDM--------------LDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDP   81 (749)
T ss_dssp             CCEEEEEEEEEEECCCSCHHHHH--------------HCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECT
T ss_pred             CccEEEEEEEEEECCCCccccCC--------------CCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecC
Confidence            46899999999999997   553              36689999999985   48999999999999999999999865


Q ss_pred             CCCCceEEEEEEECCCCCCceEEEEEeeccccccCCC-CCccc
Q psy13645        148 PPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGD-KGKDY  189 (191)
Q Consensus       148 p~~~~~l~i~v~d~d~~~d~~iG~~~l~l~~i~~~~~-~g~~p  189 (191)
                      +. ...|+|+|||+|..++++||++.++|.++..+.. +.|++
T Consensus        82 ~~-~~~L~~~V~D~D~~~ddfIG~v~I~L~~L~~g~~~~~w~~  123 (749)
T 1cjy_A           82 NQ-ENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFI  123 (749)
T ss_dssp             TS-CCBCEEEEEECCSSSCEEEEEECCBSTTSCTTCCCCEEEE
T ss_pred             CC-CCEEEEEEEECCCCCCceeEEEEEEHHHcCCCCceEEEEe
Confidence            43 3459999999998889999999999999976543 45554

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.55  E-value=1.6e-14  Score=128.90  Aligned_cols=120  Identities=23%  Similarity=0.346  Sum_probs=90.2

Q ss_pred             CCCccEEEEeEEEEEcCCCCCCCCCCCCCCchhhhcccccCCCCCccccceEEEEEEEEecCCCCCChHHHHhhhhhhcC
Q psy13645         26 AGGPKGYLKCDISVIGKGDTVKIPQKSEKDEDDIEANLLLPEGVPLERQHARFIIRIYRADGLPKMNSSLVANVKKAFTG  105 (191)
Q Consensus        26 ~~~~~G~lk~s~~v~~~gd~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~  105 (191)
                      .+|.+|||+..-+.+..+....+....            ...++    ....|+|+|++|++|+..              
T Consensus       616 ~nG~cGYVLKP~~lr~~~~~f~p~~~~------------~~~~~----~~~~L~V~Visaq~L~~~--------------  665 (816)
T 3qr0_A          616 YNGCSGYLLKPEFMRKLDKRFDPFTES------------TVDGV----VAGTIEIKIISAQFLSDK--------------  665 (816)
T ss_dssp             TTTTCSEEECCHHHHCTTCCCCTTCCS------------CCTTS----CCEEEEEEEEEEECCCSS--------------
T ss_pred             cCCceeeeecChHhcCCCcccCCCCCC------------CcCCc----cceEEEEEEEEcccCCCC--------------
Confidence            369999998876666544321111110            00111    236899999999999842              


Q ss_pred             CCCCccCcEEEEEECC-------eeeeeeeecC-CCCCccccE-EEEE-eeCCCCCceEEEEEEECCCCCCceEEEEEee
Q psy13645        106 ETKDLVDPYVQVSFAG-------LTGKTSVKKN-SYNPVWNEQ-IIFS-EMFPPLCSRIKIQLRDNDPVNNTVIGTHYID  175 (191)
Q Consensus       106 ~~~~~~dpyv~v~~~~-------~~~kT~~~~~-~~nP~wne~-~~f~-~~~p~~~~~l~i~v~d~d~~~d~~iG~~~l~  175 (191)
                          .+||||+|.+.|       .+.+|+++++ ++||+|||+ |.|. +..|.+. .|+|+|||++   +++||++.+|
T Consensus       666 ----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela-~Lrf~V~D~d---ddfiG~~~ip  737 (816)
T 3qr0_A          666 ----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLA-VVRIIVSEEN---GKFIGHRVMP  737 (816)
T ss_dssp             ----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGC-EEEEEEEETT---SCEEEEEEEE
T ss_pred             ----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCcc-EEEEEEEecC---CCeeeEEEEE
Confidence                379999999976       4679999886 699999998 9998 7778765 5999999985   7899999999


Q ss_pred             ccccccCC
Q psy13645        176 LKNISNDG  183 (191)
Q Consensus       176 l~~i~~~~  183 (191)
                      |+.|..+.
T Consensus       738 L~~L~~Gy  745 (816)
T 3qr0_A          738 LDGIKPGY  745 (816)
T ss_dssp             STTCCCEE
T ss_pred             HHHcCCcc
Confidence            99988753

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.52  E-value=2e-14  Score=128.90  Aligned_cols=87  Identities=22%  Similarity=0.426  Sum_probs=73.8

Q ss_pred             ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC------eeeeeeeecC-CCCCcccc-EEEEE-e
Q psy13645         75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG------LTGKTSVKKN-SYNPVWNE-QIIFS-E  145 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~------~~~kT~~~~~-~~nP~wne-~~~f~-~  145 (191)
                      ...|.|+|++|++|+..                  .+||||+|.+.|      .+.+|+++++ ++||+||| .|.|. +
T Consensus       724 ~~~L~V~Visaq~L~~~------------------~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V  785 (885)
T 3ohm_B          724 ANALRVKVISGQFLSDR------------------KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKV  785 (885)
T ss_dssp             CEEEEEEEEEEESCCSS------------------CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEE
T ss_pred             ceEEEEEEEEeccCccc------------------CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeE
Confidence            35899999999999842                  379999999976      2579999976 69999999 59998 7


Q ss_pred             eCCCCCceEEEEEEECCCCCCceEEEEEeeccccccCC
Q psy13645        146 MFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDG  183 (191)
Q Consensus       146 ~~p~~~~~l~i~v~d~d~~~d~~iG~~~l~l~~i~~~~  183 (191)
                      ..|.+. .|+|+|||+|   +++||++.+||+.|..+.
T Consensus       786 ~~pela-~Lrf~V~D~d---ddfiG~~~lpL~~L~~Gy  819 (885)
T 3ohm_B          786 VLPTLA-SLRIAAFEEG---GKFVGHRILPVSAIRSGY  819 (885)
T ss_dssp             SCGGGC-EEEEEEEETT---TEEEEEEEEETTTCCCEE
T ss_pred             EcCCcC-EEEEEEEcCC---ccEEeeEEEEHHHcCCCc
Confidence            778766 4999999987   899999999999987653

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.48  E-value=3.8e-14  Score=125.06  Aligned_cols=101  Identities=26%  Similarity=0.389  Sum_probs=86.9

Q ss_pred             ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEEC-----CeeeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645         75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFA-----GLTGKTSVKKNSYNPVWNEQIIFSEMFPP  149 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~-----~~~~kT~~~~~~~nP~wne~~~f~~~~p~  149 (191)
                      ...|.|.+.+|++|+.+|.              .+.+||||++.+.     ..+.+|+++++++||.|||.|.|.+....
T Consensus       171 ~~~L~V~v~~a~~L~~~d~--------------~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~  236 (674)
T 3pfq_A          171 REVLIVVVRDAKNLVPMDP--------------NGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESD  236 (674)
T ss_dssp             SSEEEEEEEEEESCCCCST--------------TSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTT
T ss_pred             cceeeeeeecccccCCCCc--------------ccccCcccccccccCccccccccccccccccCCCccceeeeecccCC
Confidence            4678999999999999885              4779999999983     34789999999999999999999986555


Q ss_pred             CCceEEEEEEECCCCC-CceEEEEEeeccccccCCCCCccc
Q psy13645        150 LCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKGKDY  189 (191)
Q Consensus       150 ~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~~g~~p  189 (191)
                      ....|.|+|||+|..+ +++||.+.++++++...+.++|++
T Consensus       237 ~~~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~~~~~w~~  277 (674)
T 3pfq_A          237 KDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFK  277 (674)
T ss_dssp             TTCEEEEEEEECCSSSCCEECCBCCCBTTHHHHCCEEEEEE
T ss_pred             ccceeeeEEeecccccccccccccccchhhhccCCccccee
Confidence            5567999999999998 999999999999998776666653

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.48  E-value=7.6e-14  Score=124.74  Aligned_cols=86  Identities=23%  Similarity=0.484  Sum_probs=73.0

Q ss_pred             ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC------eeeeee-eecC-CCCCcccc-EEEE-E
Q psy13645         75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG------LTGKTS-VKKN-SYNPVWNE-QIIF-S  144 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~------~~~kT~-~~~~-~~nP~wne-~~~f-~  144 (191)
                      ...|.|+|++|++|+.                  ..+||||+|.+.|      .+.+|+ ++++ ++||+||| .|.| .
T Consensus       677 ~~~L~V~Visa~~L~~------------------~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~  738 (799)
T 2zkm_X          677 ATTLSITVISGQFLSE------------------RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEK  738 (799)
T ss_dssp             CEEEEEEEEEEESCCS------------------SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEE
T ss_pred             eeeEEEEEEeccccCc------------------cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEE
Confidence            4689999999999984                  2379999999965      257899 7764 79999999 6999 7


Q ss_pred             eeCCCCCceEEEEEEECCCCCCceEEEEEeeccccccC
Q psy13645        145 EMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISND  182 (191)
Q Consensus       145 ~~~p~~~~~l~i~v~d~d~~~d~~iG~~~l~l~~i~~~  182 (191)
                      +..|.++ .|+|+|||++   +++||++.+||+.|..+
T Consensus       739 v~~~el~-~Lr~~V~D~d---~d~iG~~~ipl~~L~~G  772 (799)
T 2zkm_X          739 ILMPELA-SLRVAVMEEG---NKFLGHRIIPINALNSG  772 (799)
T ss_dssp             ESSGGGC-EEEEEEEETT---TEEEEEEEEEGGGBCCE
T ss_pred             EccCCcc-EEEEEEEEeC---CCccceEeeehhhcCCC
Confidence            8778776 5999999996   89999999999999764

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.36  E-value=4.3e-14  Score=120.25  Aligned_cols=95  Identities=16%  Similarity=0.281  Sum_probs=12.4

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-eeeeeeecCC---CCCccccEEEEEeeCCC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-TGKTSVKKNS---YNPVWNEQIIFSEMFPP  149 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~~---~nP~wne~~~f~~~~p~  149 (191)
                      ....|+|+|++|++|+.++                   ||||++.+++. ..||++++++   .||.|||+|.|.+. |.
T Consensus         9 ~~~~L~V~VieAk~L~~~d-------------------dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~-~~   68 (483)
T 3bxj_A            9 VDNVLKLWIIEARELPPKK-------------------RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNL-PA   68 (483)
T ss_dssp             EEECC----------------------------------------------------------------CCEECC-----
T ss_pred             eccEEEEEEEEcCCcCCCC-------------------CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecC-CC
Confidence            4568999999999998543                   89999999887 6799999998   99999999999974 43


Q ss_pred             CCceEEEEEEE-CCC---CC-CceEEEEEeeccccccCCC-CCccc
Q psy13645        150 LCSRIKIQLRD-NDP---VN-NTVIGTHYIDLKNISNDGD-KGKDY  189 (191)
Q Consensus       150 ~~~~l~i~v~d-~d~---~~-d~~iG~~~l~l~~i~~~~~-~g~~p  189 (191)
                       ...|.|+||| +|.   .+ +++||.+.++++++..+.. ++|+|
T Consensus        69 -~~~L~v~V~d~~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~  113 (483)
T 3bxj_A           69 -VRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYP  113 (483)
T ss_dssp             ---------------------------------------CCEECC-
T ss_pred             -ccEEEEEEEecCCccccCCCCceEEEEEEEHHHhcCCCCCCeEEE
Confidence             3569999999 452   45 9999999999999976543 56766

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.53  E-value=7.5e-07  Score=61.39  Aligned_cols=87  Identities=15%  Similarity=0.156  Sum_probs=64.0

Q ss_pred             eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe----eeee-eeecCCCCCccccEEEEEeeCCCC
Q psy13645         76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL----TGKT-SVKKNSYNPVWNEQIIFSEMFPPL  150 (191)
Q Consensus        76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~----~~kT-~~~~~~~nP~wne~~~f~~~~p~~  150 (191)
                      ..|+|.+.+++.-+-++.              ....|||+.|.+.-.    ..+| ...++|..|.||++|.-.+.   .
T Consensus         6 ~flRi~~~~~~~~~~~~~--------------~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~---~   68 (126)
T 1yrk_A            6 PFLRIAFNSYELGSLQAE--------------DEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIY---E   68 (126)
T ss_dssp             CEEEEEEEEEECSSCCCS--------------SSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECC---T
T ss_pred             ccEEeeeccccccccCCc--------------cccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeee---C
Confidence            468888866653221121              245899999988654    2355 66677999999999999875   3


Q ss_pred             CceEEEEEEECCCCCCceEEEEEeeccccccC
Q psy13645        151 CSRIKIQLRDNDPVNNTVIGTHYIDLKNISND  182 (191)
Q Consensus       151 ~~~l~i~v~d~d~~~d~~iG~~~l~l~~i~~~  182 (191)
                      ...|.|.|++..   .++++.+++++++|...
T Consensus        69 Gr~l~i~Vfh~a---~~fvAn~tV~~edL~~~   97 (126)
T 1yrk_A           69 GRVIQIVLMRAA---EEPVSEVTVGVSVLAER   97 (126)
T ss_dssp             TCEEEEEEEEET---TEEEEEEEEEHHHHHHH
T ss_pred             CEEEEEEEEcCC---CCeeeEEEEEHHHHHhh
Confidence            456999999754   38999999999999743

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.46  E-value=8.2e-07  Score=62.02  Aligned_cols=89  Identities=16%  Similarity=0.227  Sum_probs=66.1

Q ss_pred             ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe----eeee-eeecCCCCCccccEEEEEeeCCC
Q psy13645         75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL----TGKT-SVKKNSYNPVWNEQIIFSEMFPP  149 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~----~~kT-~~~~~~~nP~wne~~~f~~~~p~  149 (191)
                      ...|+|.+.+++--+-+..             .....|||+.|.+.-.    ..+| ...++|..|+||++|.-.+.   
T Consensus         9 ~~flRi~l~~~~~~~~~~~-------------~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~---   72 (138)
T 2enj_A            9 SPFLRIGLSNFDCGSCQSC-------------QGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHIN---   72 (138)
T ss_dssp             CCCEEEEEEEEECCCCCCS-------------CCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCC---
T ss_pred             CcceEEEeeccccCCCCCc-------------ccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEE---
Confidence            4578888877765443321             1245899999988654    2566 66677999999999998874   


Q ss_pred             CCceEEEEEEECCCCCCceEEEEEeeccccccC
Q psy13645        150 LCSRIKIQLRDNDPVNNTVIGTHYIDLKNISND  182 (191)
Q Consensus       150 ~~~~l~i~v~d~d~~~d~~iG~~~l~l~~i~~~  182 (191)
                      ....|.|.|++..   .++++.+++++++|...
T Consensus        73 ~Gr~l~i~Vfh~a---~~fVAn~tV~~edL~~~  102 (138)
T 2enj_A           73 KGRVMQIIVKGKN---VDLISETTVELYSLAER  102 (138)
T ss_dssp             SSCEEEEEEECSS---CSCCEEEEEESHHHHHH
T ss_pred             CCeEEEEEEEcCC---CCeeeEEEEEHHHHHhh
Confidence            3456999999654   38999999999999743

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=93.55  E-value=0.48  Score=43.24  Aligned_cols=86  Identities=17%  Similarity=0.210  Sum_probs=57.1

Q ss_pred             eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEE--CCe----eeeeeeecCCCCCccccEEEEEeeC--
Q psy13645         76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF--AGL----TGKTSVKKNSYNPVWNEQIIFSEMF--  147 (191)
Q Consensus        76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~--~~~----~~kT~~~~~~~nP~wne~~~f~~~~--  147 (191)
                      ..+.|+|.++.++..-+                 ..+-||++.+  ++.    ...|+.+.-..+|.|||-+.|++..  
T Consensus       217 ~~f~i~i~~~~~~~~~~-----------------~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~d  279 (940)
T 2wxf_A          217 QPFSIELIEGRKVNADE-----------------RMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCD  279 (940)
T ss_dssp             SEEEEEEEEEECCCC--------------------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGG
T ss_pred             CceEEEEEEecccCCCC-----------------CceEEEEEEEEECCEEccCceecccccCCCCcccceEEEccccccc
Confidence            47888888888876322                 2466777654  554    3445555446789999999998754  


Q ss_pred             -CCCCceEEEEEEECCCC------------C-CceEEEEEeecccc
Q psy13645        148 -PPLCSRIKIQLRDNDPV------------N-NTVIGTHYIDLKNI  179 (191)
Q Consensus       148 -p~~~~~l~i~v~d~d~~------------~-d~~iG~~~l~l~~i  179 (191)
                       |.. ..|.|+||+....            . ...+|.+.++|-+-
T Consensus       280 LPr~-a~L~~ti~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~  324 (940)
T 2wxf_A          280 LPRM-ARLCFALYAVVEKAKKARSTKKKSKKADCPIAWANLMLFDY  324 (940)
T ss_dssp             CCTT-CEEEEEEEEEC----------------CEEEEEEEEESBCT
T ss_pred             CCcc-cEEEEEEEEecCCccCccccccccccccceEEEEeeeEECC
Confidence             433 3599999985221            1 45899999887663

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=91.62  E-value=0.86  Score=34.28  Aligned_cols=56  Identities=13%  Similarity=0.275  Sum_probs=40.9

Q ss_pred             eeeeeeecCCCCCccccEEEEEeeCCCCC-ceEEEEEEECCCC----C-CceEEEEEeeccc
Q psy13645        123 TGKTSVKKNSYNPVWNEQIIFSEMFPPLC-SRIKIQLRDNDPV----N-NTVIGTHYIDLKN  178 (191)
Q Consensus       123 ~~kT~~~~~~~nP~wne~~~f~~~~p~~~-~~l~i~v~d~d~~----~-d~~iG~~~l~l~~  178 (191)
                      ..+|.+...+.+|.|+|++.+.+...... .-|.|+++.....    . ...+|.+.+||-.
T Consensus        78 e~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~  139 (220)
T 3l4c_A           78 EYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR  139 (220)
T ss_dssp             CEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred             eEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence            56777777899999999999886433332 2499999875422    2 4689999999854

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=90.74  E-value=1.6  Score=40.36  Aligned_cols=87  Identities=20%  Similarity=0.257  Sum_probs=56.9

Q ss_pred             eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEE--CCe----eeeeeeecCCCCCccccEEEEEeeC--
Q psy13645         76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSF--AGL----TGKTSVKKNSYNPVWNEQIIFSEMF--  147 (191)
Q Consensus        76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~--~~~----~~kT~~~~~~~nP~wne~~~f~~~~--  147 (191)
                      ..+.|+|..+..+....               ....+-||++.+  |+.    ..+|+.+. ..+|.|||-+.|++..  
T Consensus       355 ~~f~v~i~~~~~~n~~~---------------~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~d  418 (1091)
T 3hhm_A          355 SALRIKILCATYVNVNI---------------RDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPD  418 (1091)
T ss_dssp             SEEEEEEEEESCCCCCC---------------SSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGG
T ss_pred             CCEEEEEEEecCCCCCc---------------cccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCcccc
Confidence            47899999998775322               123567888765  444    33444333 4577899999999743  


Q ss_pred             -CCCCceEEEEEEECCCC----C-CceEEEEEeecccc
Q psy13645        148 -PPLCSRIKIQLRDNDPV----N-NTVIGTHYIDLKNI  179 (191)
Q Consensus       148 -p~~~~~l~i~v~d~d~~----~-d~~iG~~~l~l~~i  179 (191)
                       |.. .+|-|+||+....    . ...+|.+.++|-+-
T Consensus       419 LPr~-arL~~tl~~~~~~~~~~~~~~~lg~~n~~lfd~  455 (1091)
T 3hhm_A          419 LPRA-ARLCLSICSVKGRKGAKEEHCPLAWGNINLFDY  455 (1091)
T ss_dssp             CCTT-CEEEEEECCCCCCC-------CCEEEEEESBCT
T ss_pred             CChh-cEEEEEEEEecCccCcccccceeEEeeeeeEcc
Confidence             433 3599999986542    1 45799999988764

>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=85.10  E-value=1.8  Score=40.19  Aligned_cols=86  Identities=16%  Similarity=0.135  Sum_probs=52.8

Q ss_pred             eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEE--EEECCe----eeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645         76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQ--VSFAGL----TGKTSVKKNSYNPVWNEQIIFSEMFPP  149 (191)
Q Consensus        76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~--v~~~~~----~~kT~~~~~~~nP~wne~~~f~~~~p~  149 (191)
                      ..+.|+|..+.++..-                 ...+-||.  +..|+.    ...|+.+.-..+|.|||-+.|++....
T Consensus       353 ~~f~i~i~~~~~~~~~-----------------~~~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~~~Wnewl~f~i~~~d  415 (1092)
T 2y3a_A          353 NPFQITLVKGNKLNTE-----------------ETVKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEFDINICD  415 (1092)
T ss_dssp             SEEEEEECCCCCCCCC-----------------SSCCCCCBCCEEETTEESSCCCBCCCCCSSSCCCCCEEEEEEEESSS
T ss_pred             CCEEEEEEEeccCCCC-----------------CCceEEEEEEEEECCEEccCceecccccCCCCCccceeEEeCCcccc
Confidence            4677788777776532                 12456666  445665    334554444678999999999975533


Q ss_pred             C--CceEEEEEEECCCC----------------------C-CceEEEEEeeccc
Q psy13645        150 L--CSRIKIQLRDNDPV----------------------N-NTVIGTHYIDLKN  178 (191)
Q Consensus       150 ~--~~~l~i~v~d~d~~----------------------~-d~~iG~~~l~l~~  178 (191)
                      +  ...|.|+||+....                      + ...+|.+.++|-+
T Consensus       416 LPr~a~L~~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd  469 (1092)
T 2y3a_A          416 LPRMARLCFAVYAVLDKVKTKKSTKTINPSKYQTIRKAGKVHYPVAWVNTMVFD  469 (1092)
T ss_dssp             CCTTCEEEEECCCC------------------------------CCEEEEESBC
T ss_pred             CChhcEEEEEEEEecCccccccccccccccccccccccccccceeEEEeeeeEC
Confidence            2  23599999985311                      1 2478888888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	191
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	2e-12
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	2e-09
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	4e-09
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	1e-08
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	3e-08
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	4e-08
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	4e-07
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	7e-07
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	1e-06
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	9e-06
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	4e-05
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	2e-04
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	3e-04
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	4e-04
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	0.001
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	0.003
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	0.003
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	0.004

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.4 bits (143), Expect = 2e-12
 Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 3/97 (3%)

Query: 95  LVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRI 154
           L   VKKA     ++  + YV +    +   T   + S  P W +  +F      L   +
Sbjct: 4   LCVGVKKAKFDGAQEKFNTYVTLKVQNVKSTTIAVRGS-QPSWEQDFMF--EINRLDLGL 60

Query: 155 KIQLRDNDPVNNTVIGTHYIDLKNISNDGDKGKDYTY 191
            +++ +   + +T++GT +I L+ I    ++G     
Sbjct: 61  TVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWL 97

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 51.8 bits (123), Expect = 2e-09
 Identities = 19/114 (16%), Positives = 44/114 (38%), Gaps = 8/114 (7%)

Query: 80  IRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLT-GKTSVKKNSYNPVWN 138
           I+I  A  L     SL   V          L+DPY+ ++      G+T+ K+ + +P W+
Sbjct: 10  IKICEAVSLKPTAWSLRDAVGP---RPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66

Query: 139 EQIIFSEMFPPLCSRIKIQLRDNDPVNNTV-IGTHYIDLKNISNDGDKGKDYTY 191
           ++ +            ++ +  + P+     +    I  + +  +G +  +   
Sbjct: 67  DEFVTDVCNGRKI---ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWI 117

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.9 bits (121), Expect = 4e-09
 Identities = 26/122 (21%), Positives = 41/122 (33%), Gaps = 20/122 (16%)

Query: 71  LERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTG-----K 125
                   I+ +  A  L  M+ +               L DPYV++            K
Sbjct: 10  AHIDREVLIVVVRDAKNLVPMDPN--------------GLSDPYVKLKLIPDPKSESKQK 55

Query: 126 TSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD 184
           T   K S NP WNE   F         R+ +++ D D  + N  +G+    +  +   G 
Sbjct: 56  TKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV 115

Query: 185 KG 186
            G
Sbjct: 116 DG 117

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (117), Expect = 1e-08
 Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 24/125 (19%)

Query: 72  ERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTG-----KT 126
           ++   + I+ I  A  LP                      +PYV++ F          +T
Sbjct: 10  DKVGHQLIVTILGAKDLPSREDG--------------RPRNPYVKIYFLPDRSDKNKRRT 55

Query: 127 SVKKNSYNPVWNEQIIFSEMFPPLC--SRIKIQLRDNDPVN---NTVIGTHYIDLKNISN 181
              K +  P WN+  I+S +         ++I L D   V    +  +G   I+L+    
Sbjct: 56  KTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALL 115

Query: 182 DGDKG 186
           D +  
Sbjct: 116 DDEPH 120

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.2 bits (114), Expect = 3e-08
 Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 20/115 (17%)

Query: 74  QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGK------TS 127
           +  R  +RI     LPK+N                 +VDP V V   G+           
Sbjct: 2   RPERLRVRIISGQQLPKVN------------KNKNSIVDPKVIVEIHGVGRDTGSRQTAV 49

Query: 128 VKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISN 181
           +  N +NP W+ +  F E+  P  + ++  + D D  + N  IG   I   ++  
Sbjct: 50  ITNNGFNPRWDMEFEF-EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQ 103

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (113), Expect = 4e-08
 Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 15/117 (12%)

Query: 77  RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL---TGKTSVKKNSY 133
           +F + + RA  + K              G+  D  DPYV++  +       +T    N  
Sbjct: 4   KFTVVVLRATKVTKGAF-----------GDMLDTPDPYVELFISTTPDSRKRTRHFNNDI 52

Query: 134 NPVWNEQIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGDKGKDYT 190
           NPVWNE   F  + P   + ++I L D + V +  +GT    + ++     K   + 
Sbjct: 53  NPVWNETFEF-ILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFI 108

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.5 bits (107), Expect = 4e-07
 Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 21/112 (18%)

Query: 77  RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKN 131
              + + +A  LPK + S               L DPYV+V+           KT VKK 
Sbjct: 16  TLTVVVLKARHLPKSDVS--------------GLSDPYVKVNLYHAKKRISKKKTHVKKC 61

Query: 132 SYNPVWNEQIIFSEMFPPL-CSRIKIQLRDNDPVN-NTVIGTHYIDLKNISN 181
           + N V+NE  +F      L    ++  + D++  + N VIG   +      +
Sbjct: 62  TPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGS 113

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (104), Expect = 7e-07
 Identities = 27/121 (22%), Positives = 42/121 (34%), Gaps = 36/121 (29%)

Query: 80  IRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTG--------KTSVKKN 131
           I +     L + +                  V  YV+V   GL G        K S   N
Sbjct: 5   ITVISGQFLSERS------------------VRTYVEVELFGLPGDPKRRYRTKLSPSTN 46

Query: 132 SYNPVWNEQIIFSEMFP-PLCSRIKIQLRDND---------PVNNTVIGTHYIDLKNISN 181
           S NPVW E+    E    P  + +++ + +           P+N    G H++ L + SN
Sbjct: 47  SINPVWKEEPFVFEKILMPELASLRVAVMEEGNKFLGHRIIPINALNSGYHHLCLHSESN 106

Query: 182 D 182
            
Sbjct: 107 M 107

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.0 bits (103), Expect = 1e-06
 Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 19/113 (16%)

Query: 72  ERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG---LTGKTSV 128
           + Q+ + ++ I +A  LP ++                   DPYV+V          +T V
Sbjct: 30  DFQNNQLLVGIIQAAELPALDMG--------------GTSDPYVKVFLLPDKKKKFETKV 75

Query: 129 KKNSYNPVWNEQIIFSEMFPPLCSRI-KIQLRDNDPVN-NTVIGTHYIDLKNI 179
            + + NPV+NEQ  F   +  L  +   + + D D  + + +IG   + +  +
Sbjct: 76  HRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 128

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (96), Expect = 9e-06
 Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 19/114 (16%)

Query: 72  ERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG---LTGKTSV 128
             +   F++ I  A GLP M+             E     DPY++++         KT V
Sbjct: 18  NFERKAFVVNIKEARGLPAMD-------------EQSMTSDPYIKMTILPEKKHKVKTRV 64

Query: 129 KKNSYNPVWNEQIIFSEMFPPLC--SRIKIQLRDNDPVN-NTVIGTHYIDLKNI 179
            + + +P ++E   F  +         +   +   D  + + +IG   I L  I
Sbjct: 65  LRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGI 118

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.4 bits (91), Expect = 4e-05
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 21/119 (17%)

Query: 77  RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGK-----TSVKKN 131
             I+ I R   L  M+++  +              DP+V++      GK     T +KK 
Sbjct: 16  GLIVGIIRCVHLAAMDANGYS--------------DPFVKLWLKPDMGKKAKHKTQIKKK 61

Query: 132 SYNPVWNEQIIFSEMFPPL-CSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKGKD 188
           + NP +NE+  +      L    + I + D D    N  IG   + +           +
Sbjct: 62  TLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYE 120

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 2e-04
 Identities = 22/106 (20%), Positives = 45/106 (42%), Gaps = 8/106 (7%)

Query: 91  MNSSLVANVKKAFTGETKDLV---DPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMF 147
           M S L   V  A   E K       PYV+V+  G + KT    N+ +P W + +      
Sbjct: 4   MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP 63

Query: 148 PPLCSRIKIQLRDNDPV-NNTVIGTHYIDLKNI-SNDGDKGKDYTY 191
               S++  ++  +  + ++ ++GT  +D+     ++  K ++   
Sbjct: 64  ---VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVV 106

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.5 bits (86), Expect = 3e-04
 Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 21/119 (17%)

Query: 77  RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKN 131
           +  + I  A  L KM+                 L DPYV++            KT++KKN
Sbjct: 26  KLTVVILEAKNLKKMDVG--------------GLSDPYVKIHLMQNGKRLKKKKTTIKKN 71

Query: 132 SYNPVWNEQIIFSEMFPPL-CSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKGKD 188
           + NP +NE   F   F  +   ++ + + D D +  N  IG  ++   +   +     D
Sbjct: 72  TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSD 130

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.5 bits (83), Expect = 4e-04
 Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 13/122 (10%)

Query: 72  ERQHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKN 131
                + ++RI +A  LP  +S+              D       +       +T V + 
Sbjct: 14  LYGSDQLVVRILQALDLPAKDSN-----------GFSDPYVKIYLLPDRKKKFQTKVHRK 62

Query: 132 SYNPVWNEQIIFSEMFPPLCSR-IKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKGKDY 189
           + NP++NE   FS     L  R +   + D D  + + +IG   +D      +    +  
Sbjct: 63  TLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL 122

Query: 190 TY 191
             
Sbjct: 123 WR 124

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.1 bits (80), Expect = 0.001
 Identities = 10/63 (15%), Positives = 13/63 (20%), Gaps = 8/63 (12%)

Query: 109 DLVDPYVQVSF-----AGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIKIQLRDNDP 163
           D   P+  V                KK +  P W                I+I L     
Sbjct: 22  DASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE---GRVIQIVLMRAAE 78

Query: 164 VNN 166
              
Sbjct: 79  DPM 81

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.4 bits (78), Expect = 0.003
 Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 21/114 (18%)

Query: 77  RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKN 131
              + I +A  L  M+ +                 DPYV+ S           KTS+KKN
Sbjct: 21  LLTVTIIKASNLKAMDLT--------------GFSDPYVKASLISEGRRLKKRKTSIKKN 66

Query: 132 SYNPVWNEQIIFS-EMFPPLCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDG 183
           + NP +NE ++F           + I + D D +  N VIG   +  +     G
Sbjct: 67  TLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHG 120

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (78), Expect = 0.003
 Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 6/98 (6%)

Query: 92  NSSLVANVKKAFTGETKDLVDPYVQVSFAGLTG----KTSVKKNSYNPVWNEQI--IFSE 145
            + L     +A T       D YVQ S A  TG    +T++KK   +  W E +    +E
Sbjct: 25  KAELFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAE 84

Query: 146 MFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDG 183
              P  +        +    ++V G   + L   S   
Sbjct: 85  EELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPL 122

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (76), Expect = 0.004
 Identities = 17/106 (16%), Positives = 33/106 (31%), Gaps = 15/106 (14%)

Query: 80  IRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNE 139
           +++ +A  L   + S                 DP+  +       +T     + NP WN+
Sbjct: 10  VKVLKAADLLAADFS--------------GKSDPFCLLELGNDRLQTHTVYKNLNPEWNK 55

Query: 140 QIIFSEMFPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGDK 185
              F          + +   D D   +  +G   I L +I +    
Sbjct: 56  VFTFPIKDIHDVLEVTVFDEDGDKPPD-FLGKVAIPLLSIRDGQPN 100

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	191
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.84
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.82
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.78
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.78
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.77
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.76
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.75
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.75
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.75
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.73
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.73
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.72
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.72
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.69
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.67
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.67
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.64
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.61
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.6
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.41
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	95.66

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=3.4e-21  Score=135.33  Aligned_cols=102  Identities=25%  Similarity=0.372  Sum_probs=87.7

Q ss_pred             ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEEC-----CeeeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645         75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFA-----GLTGKTSVKKNSYNPVWNEQIIFSEMFPP  149 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~-----~~~~kT~~~~~~~nP~wne~~~f~~~~p~  149 (191)
                      ...|.|.|.+|++|+.++.              .+.+||||++.+.     ..+.+|++++++.||.|||.|.|.+..+.
T Consensus        14 ~~~L~V~V~~a~~L~~~d~--------------~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~   79 (132)
T d1a25a_          14 REVLIVVVRDAKNLVPMDP--------------NGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESD   79 (132)
T ss_dssp             SSEEEEEEEEEESCCCCST--------------TSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGG
T ss_pred             CCEEEEEEEeeeCCCCCCC--------------CCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccc
Confidence            4689999999999998885              4678999999983     34789999999999999999999986555


Q ss_pred             CCceEEEEEEECCCCC-CceEEEEEeeccccccCCCCCcccc
Q psy13645        150 LCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGDKGKDYT  190 (191)
Q Consensus       150 ~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~~g~~p~  190 (191)
                      ....|.|+|||+|..+ +++||.+.++|+++..++.++|++.
T Consensus        80 ~~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~W~~L  121 (132)
T d1a25a_          80 KDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKL  121 (132)
T ss_dssp             GGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTCCEEEEEEC
T ss_pred             cCCEEeEEEEecCCCCCCcEeEEEEEeHHHcCCCCCCeEEEC
Confidence            5557999999999988 9999999999999977666778764

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.8e-20  Score=129.56  Aligned_cols=94  Identities=17%  Similarity=0.253  Sum_probs=83.4

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCce
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSR  153 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~  153 (191)
                      +.+.|+|+|++|++|+.++.              .+.+||||++++++.+.+|++++++.||.|||.|.|.+..+  ...
T Consensus         4 ~~G~L~V~v~~A~~L~~~d~--------------~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~--~~~   67 (126)
T d2ep6a1           4 DVGILQVKVLKAADLLAADF--------------SGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI--HDV   67 (126)
T ss_dssp             CSEEEEEEEEEEESCCCSSS--------------SSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCT--TCE
T ss_pred             ccEEEEEEEEEeECCCCCCC--------------CCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEecc--Cce
Confidence            45899999999999998874              46789999999999999999999999999999999997543  467


Q ss_pred             EEEEEEECCCCC-CceEEEEEeeccccccCC
Q psy13645        154 IKIQLRDNDPVN-NTVIGTHYIDLKNISNDG  183 (191)
Q Consensus       154 l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~  183 (191)
                      |.|+|||++..+ +++||++.++|+++..+.
T Consensus        68 L~i~V~d~~~~~~d~~lG~~~i~l~~l~~~~   98 (126)
T d2ep6a1          68 LEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ   98 (126)
T ss_dssp             EEEEEEEEETTEEEEECCBCEEEGGGCCSSC
T ss_pred             eEEEEEEccCCcCcceEEEEEEEHHHCCCCC
Confidence            999999999888 899999999999986543

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=5.7e-19  Score=122.68  Aligned_cols=103  Identities=23%  Similarity=0.281  Sum_probs=83.2

Q ss_pred             ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC---eeeeeeeecCCCCCccccEEEEEeeCCCCC
Q psy13645         75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG---LTGKTSVKKNSYNPVWNEQIIFSEMFPPLC  151 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~~~nP~wne~~~f~~~~p~~~  151 (191)
                      .+.|+|+|++|++|+....+..           .+..||||++.+++   .+.+|+++.++.||.|||.|.|.+..+ ..
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~-----------~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~-~~   69 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDM-----------LDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPN-QE   69 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHH-----------HCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTT-SC
T ss_pred             CcEEEEEEEEccCCCCcccccc-----------CCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCc-cc
Confidence            4689999999999996543211           25689999999976   478999999999999999999998543 34


Q ss_pred             ceEEEEEEECCCCCCceEEEEEeeccccccCCC-CCccc
Q psy13645        152 SRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGD-KGKDY  189 (191)
Q Consensus       152 ~~l~i~v~d~d~~~d~~iG~~~l~l~~i~~~~~-~g~~p  189 (191)
                      ..|.|+|||++..+|++||++.++|++|..+.. +.|+|
T Consensus        70 ~~L~v~V~d~d~~~d~~lG~~~i~L~~l~~~~~~~~~~~  108 (126)
T d1rlwa_          70 NVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFI  108 (126)
T ss_dssp             CEEEEEEEECCSSCCEEEEEEEEEGGGSCTTCEEEEEEE
T ss_pred             CcEEEEEEECCCCCCCeEEEEEEEHHHccCCCeEEEEEE
Confidence            569999999998779999999999999965433 44554

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=1e-18  Score=122.38  Aligned_cols=94  Identities=30%  Similarity=0.543  Sum_probs=76.3

Q ss_pred             eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecC-CCCCccccEEEEEeeCCC
Q psy13645         76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKN-SYNPVWNEQIIFSEMFPP  149 (191)
Q Consensus        76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~-~~nP~wne~~~f~~~~p~  149 (191)
                      ..|+|+|++|++|+.++..            .++.+||||++++.|     .+.+|+++++ +.||.|||+|.|.+..+.
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~------------~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~   71 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKN------------KNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPD   71 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----------------CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGG
T ss_pred             EEEEEEEEEeeCCCCCCCC------------CCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcch
Confidence            4799999999999876531            246689999999854     4788998765 579999999999986665


Q ss_pred             CCceEEEEEEECCCCC-CceEEEEEeeccccccC
Q psy13645        150 LCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISND  182 (191)
Q Consensus       150 ~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~  182 (191)
                      .. .|.|+|||+|..+ |++||++.++|+++..+
T Consensus        72 ~~-~L~~~V~D~d~~~~d~~iG~~~i~l~~l~~g  104 (131)
T d1qasa2          72 LA-LVRFMVEDYDSSSKNDFIGQSTIPWNSLKQG  104 (131)
T ss_dssp             GC-EEEEEEEECCTTTCCEEEEEEEEEGGGBCCE
T ss_pred             hc-eEEEEEEEecCCCCCcEEEEEEEEEeccCCC
Confidence            44 5999999999998 99999999999998654

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=1.1e-18  Score=121.59  Aligned_cols=94  Identities=14%  Similarity=0.245  Sum_probs=80.1

Q ss_pred             eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCceEE
Q psy13645         76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIK  155 (191)
Q Consensus        76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~  155 (191)
                      +.|.|+|.+|++|+.++                 ..||||++++++.+.+|+++++ .||.|||.|.|.+..|  ...|.
T Consensus         2 ~~L~V~v~~a~~l~~~~-----------------~~dpYv~l~~~~~k~~T~~~k~-~nP~Wne~f~f~v~~~--~~~L~   61 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE-----------------KFNTYVTLKVQNVKSTTIAVRG-SQPSWEQDFMFEINRL--DLGLT   61 (128)
T ss_dssp             EEEEEEEEEEECSSCGG-----------------GCEEEEEEEETTEEEECCCEES-SSCEEEEEEEEEECCC--SSEEE
T ss_pred             eEEEEEEEEEECCCCCC-----------------CcCeEEEEEeCCEEEEEEEecC-CCCeEEEEEEEeeccc--cceEE
Confidence            67999999999998755                 3699999999999999999874 5999999999998655  35699


Q ss_pred             EEEEECCCCCCceEEEEEeeccccccCCC---CCccc
Q psy13645        156 IQLRDNDPVNNTVIGTHYIDLKNISNDGD---KGKDY  189 (191)
Q Consensus       156 i~v~d~d~~~d~~iG~~~l~l~~i~~~~~---~g~~p  189 (191)
                      |+|||++..+|++||++.|+|++|..+++   +.|++
T Consensus        62 v~V~d~~~~~d~~lG~~~I~L~~l~~~~~~~~~~W~~   98 (128)
T d2cjta1          62 VEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLT   98 (128)
T ss_dssp             EEEEECCSSCEEEEEEEEEEGGGSCBCSSCCCCEEEE
T ss_pred             EEEEeCCCcCCcceEEEEEEehhhccCCCCCCCeeEE
Confidence            99999998779999999999999975544   34665

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=6.6e-19  Score=125.11  Aligned_cols=102  Identities=24%  Similarity=0.387  Sum_probs=83.9

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEEC---CeeeeeeeecCCCCCccccEEEEEeeCCCC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFA---GLTGKTSVKKNSYNPVWNEQIIFSEMFPPL  150 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~---~~~~kT~~~~~~~nP~wne~~~f~~~~p~~  150 (191)
                      ....|.|+|++|++|+.++.              .+.+||||++.+.   ..+.+|++++++.||.|||.|.|.+..+.+
T Consensus        32 ~~~~L~V~V~~a~~L~~~~~--------------~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l   97 (143)
T d1rsya_          32 QNNQLLVGIIQAAELPALDM--------------GGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL   97 (143)
T ss_dssp             TTTEEEEEEEEEESCCCCST--------------TSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHH
T ss_pred             CCCEEEEEEEEccCCCCCCC--------------CCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeecc
Confidence            34689999999999998874              4678999999983   347899999999999999999998643332


Q ss_pred             C-ceEEEEEEECCCCC-CceEEEEEeeccccccCCC-CCccc
Q psy13645        151 C-SRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDY  189 (191)
Q Consensus       151 ~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p  189 (191)
                      . ..|.|+|||++..+ +++||++.++|+++..+.. +.|++
T Consensus        98 ~~~~L~i~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~  139 (143)
T d1rsya_          98 GGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRD  139 (143)
T ss_dssp             TTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEE
T ss_pred             CCceEEEEEEEcCCCCCCcEEEEEEEEchhccCCCCCccEEe
Confidence            2 46999999999988 8999999999999965443 56765

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.7e-18  Score=119.84  Aligned_cols=89  Identities=19%  Similarity=0.353  Sum_probs=77.9

Q ss_pred             eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeecCCCCCccccEEEEEeeCCCCCceEE
Q psy13645         76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKKNSYNPVWNEQIIFSEMFPPLCSRIK  155 (191)
Q Consensus        76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~nP~wne~~~f~~~~p~~~~~l~  155 (191)
                      .+|.|+|.+|++++..+.              .+..||||++.++++..+|++++++.||.|||.|.|.+. +  ...|.
T Consensus         6 ~~L~v~v~~A~~~~~~~~--------------~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~-~--~~~l~   68 (133)
T d2nq3a1           6 SQLQITVISAKLKENKKN--------------WFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT-P--VSKLH   68 (133)
T ss_dssp             EEEEEEEEEEEECCCC----------------CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEEC-T--TCEEE
T ss_pred             eEEEEEEEEeECCCcCCC--------------CCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEE-e--cceeE
Confidence            689999999999987653              356899999999999999999999999999999999974 2  35699


Q ss_pred             EEEEECCCCC-CceEEEEEeecccccc
Q psy13645        156 IQLRDNDPVN-NTVIGTHYIDLKNISN  181 (191)
Q Consensus       156 i~v~d~d~~~-d~~iG~~~l~l~~i~~  181 (191)
                      |+|||++..+ |++||++.++|+++..
T Consensus        69 ~~V~d~d~~~~d~~iG~~~i~L~~l~~   95 (133)
T d2nq3a1          69 FRVWSHQTLKSDVLLGTAALDIYETLK   95 (133)
T ss_dssp             EEEEECCSSSCCEEEEEEEEEHHHHHH
T ss_pred             EEEEEccCCCCCceEEEEEEEHHHhhh
Confidence            9999999998 9999999999998743

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.75  E-value=3.2e-18  Score=120.43  Aligned_cols=92  Identities=25%  Similarity=0.400  Sum_probs=80.5

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCeeeeeeeec-CCCCCccccEEEEEeeCCCCCc
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGLTGKTSVKK-NSYNPVWNEQIIFSEMFPPLCS  152 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~~~kT~~~~-~~~nP~wne~~~f~~~~p~~~~  152 (191)
                      +.+.|.|+|++|++|+.++.              .+.+||||++.+++...+|++++ ++.||.|||.|.|.+..+  ..
T Consensus         8 p~G~L~V~v~~a~~L~~~d~--------------~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~--~~   71 (136)
T d1wfja_           8 PHGTLEVVLVSAKGLEDADF--------------LNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG--TT   71 (136)
T ss_dssp             CEEEEEEEEEEEEECSSCCS--------------SCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESS--CC
T ss_pred             CcEEEEEEEEEeeCCCCCCC--------------CCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCc--cc
Confidence            56899999999999998773              46789999999999999999987 489999999999998643  34


Q ss_pred             eEEEEEEECCCCC-CceEEEEEeecccccc
Q psy13645        153 RIKIQLRDNDPVN-NTVIGTHYIDLKNISN  181 (191)
Q Consensus       153 ~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~  181 (191)
                      .|.|+|||++..+ |++||++.++|.++..
T Consensus        72 ~L~v~V~d~d~~~~d~~iG~~~i~L~~l~~  101 (136)
T d1wfja_          72 ELKAKIFDKDVGTEDDAVGEATIPLEPVFV  101 (136)
T ss_dssp             EEEEEECCSSSCTTTCCSEEEEEESHHHHH
T ss_pred             eEEEEEEEecCCCCCCEEEEEEEEhHHhcc
Confidence            5999999999988 9999999999998754

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=4.9e-18  Score=118.68  Aligned_cols=102  Identities=24%  Similarity=0.378  Sum_probs=81.3

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC---eeeeeeeecCCCCCccccEEEEEeeCCCC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG---LTGKTSVKKNSYNPVWNEQIIFSEMFPPL  150 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~~~nP~wne~~~f~~~~p~~  150 (191)
                      ....|.|+|.+|++|+.++.              .+.+||||++.+.+   .+.+|++++++.||.|||.|.|.+..+.+
T Consensus        16 ~~~~L~V~V~~a~~L~~~~~--------------~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~   81 (130)
T d1dqva1          16 GSDQLVVRILQALDLPAKDS--------------NGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAEL   81 (130)
T ss_dssp             SSCEEEEEEEEEECCCCCST--------------TSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGG
T ss_pred             CCCEEEEEEEeeeCCccccC--------------CCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHc
Confidence            45689999999999998774              46789999999854   37899999999999999999999755443


Q ss_pred             C-ceEEEEEEECCCCC-CceEEEEEeeccc-cccCCC--CCccc
Q psy13645        151 C-SRIKIQLRDNDPVN-NTVIGTHYIDLKN-ISNDGD--KGKDY  189 (191)
Q Consensus       151 ~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~-i~~~~~--~g~~p  189 (191)
                      . ..|.|+|||++..+ +++||++.+++.. +.....  ..|++
T Consensus        82 ~~~~L~v~V~d~~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~  125 (130)
T d1dqva1          82 AQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRD  125 (130)
T ss_dssp             SSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEE
T ss_pred             CCCeEEEEEEEcCCCCCCceEEEEEECchhhhhcCCCCCcEEEe
Confidence            3 35999999999887 9999999998654 333322  35765

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=3.4e-19  Score=126.30  Aligned_cols=100  Identities=24%  Similarity=0.387  Sum_probs=81.3

Q ss_pred             eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe--------------eeeeeeecCCCCCccccEE
Q psy13645         76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL--------------TGKTSVKKNSYNPVWNEQI  141 (191)
Q Consensus        76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~--------------~~kT~~~~~~~nP~wne~~  141 (191)
                      ..|.|+|++|++|+.++.              .+.+||||++++.+.              +.+|++++++.||.|||.|
T Consensus        18 ~~L~V~V~~A~~L~~~d~--------------~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f   83 (142)
T d1rh8a_          18 GNLIIHILQARNLVPRDN--------------NGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTV   83 (142)
T ss_dssp             TEEEEEEEEEESCCCCSS--------------SSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEE
T ss_pred             CEEEEEEEEeECCCCcCC--------------CCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEE
Confidence            479999999999998874              467899999998432              3679999999999999999


Q ss_pred             EEEeeCCC--CCceEEEEEEECCCCC-CceEEEEEeeccccccCCC-CCccc
Q psy13645        142 IFSEMFPP--LCSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDY  189 (191)
Q Consensus       142 ~f~~~~p~--~~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p  189 (191)
                      .|....+.  ....|.|+|||++..+ +++||++.++|+++..+.. ++|+|
T Consensus        84 ~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~  135 (142)
T d1rh8a_          84 IYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYP  135 (142)
T ss_dssp             EECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEE
T ss_pred             EEeeecccccCCCEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEE
Confidence            99843221  2345999999999887 8999999999999966544 57765

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.73  E-value=6.4e-18  Score=119.02  Aligned_cols=110  Identities=18%  Similarity=0.326  Sum_probs=85.3

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-eeeeeeecCCCCCccccEEEEEeeCCCCCc
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-TGKTSVKKNSYNPVWNEQIIFSEMFPPLCS  152 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~~~nP~wne~~~f~~~~p~~~~  152 (191)
                      ..+.|+|+|++|++|++.+....+..   ..+...+..||||++.+++. ..+|++++++.||.|||.|.|.+..   ..
T Consensus         4 ~~G~L~v~I~~A~~L~~~~~~~~~~~---~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~---~~   77 (136)
T d1gmia_           4 FNGLLKIKICEAVSLKPTAWSLRDAV---GPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN---GR   77 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-C---CSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE---EC
T ss_pred             EEEEEEEEEEEeECCCcccccccccc---cccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec---CC
Confidence            46899999999999997653210000   01123567899999999987 4689999999999999999999753   24


Q ss_pred             eEEEEEEECCCCC-CceEEEEEeeccccccCCC---CCccc
Q psy13645        153 RIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD---KGKDY  189 (191)
Q Consensus       153 ~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~---~g~~p  189 (191)
                      .|.|+|||++..+ |++||.+.++|+++...+.   +.|++
T Consensus        78 ~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~  118 (136)
T d1gmia_          78 KIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWID  118 (136)
T ss_dssp             EEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEE
T ss_pred             ceEEEEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEe
Confidence            6999999999988 9999999999999976543   35654

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=8e-18  Score=116.72  Aligned_cols=102  Identities=24%  Similarity=0.362  Sum_probs=80.6

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEE-eeC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFS-EMF  147 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~-~~~  147 (191)
                      ....|.|+|++|++|+.++.              .+.+||||++.+.+     .+.+|++++++.+|.|||.|.|. +..
T Consensus        12 ~~~~L~V~V~~a~~L~~~~~--------------~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~   77 (125)
T d2bwqa1          12 VGHQLIVTILGAKDLPSRED--------------GRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHR   77 (125)
T ss_dssp             TTTEEEEEEEEEESCCCCTT--------------SCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCG
T ss_pred             CCCEEEEEEEEeECCCCcCC--------------CCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeCh
Confidence            45689999999999998764              46789999999832     26899999999999999999997 332


Q ss_pred             CCCC-ceEEEEEEECCCCC---CceEEEEEeeccccccCCCCCccc
Q psy13645        148 PPLC-SRIKIQLRDNDPVN---NTVIGTHYIDLKNISNDGDKGKDY  189 (191)
Q Consensus       148 p~~~-~~l~i~v~d~d~~~---d~~iG~~~l~l~~i~~~~~~g~~p  189 (191)
                      ..+. ..|.|+|||.+..+   +++||++.++|+++...+..+|+|
T Consensus        78 ~~l~~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~~~~Wy~  123 (125)
T d2bwqa1          78 REFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHWYK  123 (125)
T ss_dssp             GGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSSCEEEEE
T ss_pred             hhcCCCEEEEEEEECCCCCCCCCeeEEEEEEEchhcCCCCCCEEEe
Confidence            2222 35999999998753   569999999999998777778886

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.7e-17  Score=117.11  Aligned_cols=97  Identities=23%  Similarity=0.408  Sum_probs=78.5

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEEC---CeeeeeeeecCCCCCccccEEEEEeeCCC-
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFA---GLTGKTSVKKNSYNPVWNEQIIFSEMFPP-  149 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~---~~~~kT~~~~~~~nP~wne~~~f~~~~p~-  149 (191)
                      ....|.|+|++|++|+.++..             ...+||||++.+.   ..+.+|++++++.||.|||.|.|....+. 
T Consensus        20 ~~~~L~V~V~~a~~L~~~d~~-------------~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~   86 (138)
T d1ugka_          20 ERKAFVVNIKEARGLPAMDEQ-------------SMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQ   86 (138)
T ss_dssp             GGTEEEEEEEEEESCCCCBTT-------------TTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTT
T ss_pred             CCCEEEEEEEEecCCCCCCCC-------------CCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHH
Confidence            456899999999999987741             2347999999993   34889999999999999999999742222 


Q ss_pred             C-CceEEEEEEECCCCC-CceEEEEEeeccccccCC
Q psy13645        150 L-CSRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDG  183 (191)
Q Consensus       150 ~-~~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~  183 (191)
                      + ...|.|+|||++..+ +++||++.++|+++....
T Consensus        87 l~~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~~~~~  122 (138)
T d1ugka_          87 IQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSE  122 (138)
T ss_dssp             GGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTT
T ss_pred             cccceEEEEEEECCCCCCCcEEEEEEEEcccccCCC
Confidence            2 235999999999987 999999999999985443

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=5.7e-17  Score=113.91  Aligned_cols=92  Identities=25%  Similarity=0.413  Sum_probs=77.1

Q ss_pred             ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC-----eeeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645         75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG-----LTGKTSVKKNSYNPVWNEQIIFSEMFPP  149 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~nP~wne~~~f~~~~p~  149 (191)
                      ...|.|.|.+|++|+.++.              .+..||||++++.+     .+.+|++++++.||.|||.|.|.+....
T Consensus        14 ~~~L~V~v~~a~nL~~~~~--------------~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~   79 (137)
T d2cm5a1          14 QGGLIVGIIRCVHLAAMDA--------------NGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSD   79 (137)
T ss_dssp             TTEEEEEEEEEESCCCCST--------------TSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGG
T ss_pred             CCEEEEEEEEEECCCCCCC--------------CCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHH
Confidence            4689999999999998774              36789999999832     2789999999999999999999975444


Q ss_pred             CC-ceEEEEEEECCCCC-CceEEEEEeeccccc
Q psy13645        150 LC-SRIKIQLRDNDPVN-NTVIGTHYIDLKNIS  180 (191)
Q Consensus       150 ~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~  180 (191)
                      +. ..|.|+|||++..+ +++||++.+++..+.
T Consensus        80 l~~~~l~v~v~~~~~~~~~~~iG~~~i~l~~~~  112 (137)
T d2cm5a1          80 LAKKSLDISVWDYDIGKSNDYIGGCQLGISAKG  112 (137)
T ss_dssp             GGGCEEEEEEEECCSSSCCEEEEEEEEETTCCH
T ss_pred             ccccEEEEEeeeCCCCCCCCEEEEEEeCccccC
Confidence            33 35999999999887 999999999998653

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=1.2e-16  Score=112.64  Aligned_cols=91  Identities=29%  Similarity=0.396  Sum_probs=72.4

Q ss_pred             ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEEC--Ce---eeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645         75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFA--GL---TGKTSVKKNSYNPVWNEQIIFSEMFPP  149 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~--~~---~~kT~~~~~~~nP~wne~~~f~~~~p~  149 (191)
                      ...|.|.|++|++|+.++.              .+..||||++.+.  +.   +.+|++++++.||.|||+|.|.+....
T Consensus        14 ~~~L~V~v~~a~~L~~~~~--------------~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~   79 (138)
T d1w15a_          14 TNTLTVVVLKARHLPKSDV--------------SGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCES   79 (138)
T ss_dssp             TTEEEEEEEEEESCC--------------------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSS
T ss_pred             CCEEEEEEEEeECCCCCCC--------------CCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHH
Confidence            4579999999999998774              3568999999983  32   568999999999999999999975555


Q ss_pred             CCc-eEEEEEEECCCCC-CceEEEEEeecccc
Q psy13645        150 LCS-RIKIQLRDNDPVN-NTVIGTHYIDLKNI  179 (191)
Q Consensus       150 ~~~-~l~i~v~d~d~~~-d~~iG~~~l~l~~i  179 (191)
                      +.. .|.|+|||++..+ +++||++.+++...
T Consensus        80 ~~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~  111 (138)
T d1w15a_          80 LEEISVEFLVLDSERGSRNEVIGRLVLGATAE  111 (138)
T ss_dssp             STTEEEEEEEEECCTTSCCEEEEEEEESTTCC
T ss_pred             hCccEEEEEEEeCCCCCCCCEEEEEEEcchhC
Confidence            443 4999999999887 99999999998763

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.2e-16  Score=112.62  Aligned_cols=99  Identities=22%  Similarity=0.245  Sum_probs=80.0

Q ss_pred             cceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe----eeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645         74 QHARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL----TGKTSVKKNSYNPVWNEQIIFSEMFPP  149 (191)
Q Consensus        74 ~~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~----~~kT~~~~~~~nP~wne~~~f~~~~p~  149 (191)
                      ....|.|.|++|++|+.                 .+..||||++.+.+.    ..+|++++++.||.|||.|.|.+....
T Consensus        24 ~~~~L~V~v~~a~~L~~-----------------~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~   86 (138)
T d1wfma_          24 QKAELFVTRLEAVTSNH-----------------DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEE   86 (138)
T ss_dssp             TTTEEEEEEEEEECCCC-----------------SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTS
T ss_pred             CCCEEEEEEEEcCCCCC-----------------CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehh
Confidence            45689999999999953                 245799999998542    678999999999999999999975444


Q ss_pred             CC-ceEEEEEEECCCCC-CceEEEEEeeccccccCCC-CCccc
Q psy13645        150 LC-SRIKIQLRDNDPVN-NTVIGTHYIDLKNISNDGD-KGKDY  189 (191)
Q Consensus       150 ~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~~~~~-~g~~p  189 (191)
                      +. ..|.|+|||++..+ +++||++.|+|.++..... +.|++
T Consensus        87 l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~  129 (138)
T d1wfma_          87 LPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGE  129 (138)
T ss_dssp             STTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEE
T ss_pred             ccceEEEEEEeeecccccceeeeEEEEEhHHccCCCCceEeEe
Confidence            33 45999999999988 9999999999999865432 55543

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=2.2e-16  Score=113.62  Aligned_cols=91  Identities=29%  Similarity=0.521  Sum_probs=76.5

Q ss_pred             ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC--e---eeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645         75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG--L---TGKTSVKKNSYNPVWNEQIIFSEMFPP  149 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~--~---~~kT~~~~~~~nP~wne~~~f~~~~p~  149 (191)
                      ...|.|.|.+|++|+..+.              .+.+||||++++..  .   ..+|++++++.||+|||.|.|.+..+.
T Consensus        24 ~~~L~V~V~~a~~L~~~~~--------------~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~   89 (157)
T d1uowa_          24 AGKLTVVILEAKNLKKMDV--------------GGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQ   89 (157)
T ss_dssp             TTEEEEEEEEEESCCCCST--------------TSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGG
T ss_pred             CCEEEEEEEEEEEcccccC--------------CCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHH
Confidence            4689999999999997764              46789999999843  2   568999999999999999999975544


Q ss_pred             CC-ceEEEEEEECCCCC-CceEEEEEeecccc
Q psy13645        150 LC-SRIKIQLRDNDPVN-NTVIGTHYIDLKNI  179 (191)
Q Consensus       150 ~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i  179 (191)
                      +. ..|.|+|||++..+ +++||++.|++...
T Consensus        90 l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~  121 (157)
T d1uowa_          90 IQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST  121 (157)
T ss_dssp             GGGCEEEEEEEECCSSSCCCEEEEEEEETTCC
T ss_pred             cCccEEEEEEcccCCCCCCceeEEEEEecccC
Confidence            33 36999999999988 99999999999753

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.6e-15  Score=104.61  Aligned_cols=86  Identities=24%  Similarity=0.510  Sum_probs=66.8

Q ss_pred             EEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECC------eeeeeeee--cCCCCCccccE-EEE-Eee
Q psy13645         77 RFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAG------LTGKTSVK--KNSYNPVWNEQ-IIF-SEM  146 (191)
Q Consensus        77 ~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~------~~~kT~~~--~~~~nP~wne~-~~f-~~~  146 (191)
                      +|+|+|++|++|+..+                  .||||+|++.|      .+.+|++.  .+++||.|||+ +.+ .+.
T Consensus         2 tl~V~Visaq~L~~~~------------------~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~   63 (122)
T d2zkmx2           2 TLSITVISGQFLSERS------------------VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKIL   63 (122)
T ss_dssp             EEEEEEEEEESCCSSC------------------CCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEES
T ss_pred             EEEEEEEEeeCCCCCC------------------CCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecC
Confidence            6899999999998543                  69999999854      24455543  56899999986 444 455


Q ss_pred             CCCCCceEEEEEEECCCCCCceEEEEEeeccccccCCC
Q psy13645        147 FPPLCSRIKIQLRDNDPVNNTVIGTHYIDLKNISNDGD  184 (191)
Q Consensus       147 ~p~~~~~l~i~v~d~d~~~d~~iG~~~l~l~~i~~~~~  184 (191)
                      .|++. .|.|+|||++   +++||++.+||+.|..+.+
T Consensus        64 ~~~l~-~L~f~V~D~d---~~~lG~~~ipl~~l~~GyR   97 (122)
T d2zkmx2          64 MPELA-SLRVAVMEEG---NKFLGHRIIPINALNSGYH   97 (122)
T ss_dssp             SGGGC-EEEEEEEETT---TEEEEEEEEEGGGBCCEEE
T ss_pred             CCccc-EEEEEEECCC---CCEEEEEEEEcccCcCCce
Confidence            66655 4999999985   8999999999999877543

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=4.6e-17  Score=115.62  Aligned_cols=92  Identities=29%  Similarity=0.454  Sum_probs=76.3

Q ss_pred             ceEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-----eeeeeeecCCCCCccccEEEEEeeCCC
Q psy13645         75 HARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-----TGKTSVKKNSYNPVWNEQIIFSEMFPP  149 (191)
Q Consensus        75 ~~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~~~nP~wne~~~f~~~~p~  149 (191)
                      .+.|.|.|.+|++|+.++.              .+..||||++.+.+.     +.+|++++++.||.|||.|.|.+....
T Consensus        19 ~~~L~V~V~~a~nL~~~~~--------------~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~   84 (145)
T d1dqva2          19 AGLLTVTIIKASNLKAMDL--------------TGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPES   84 (145)
T ss_dssp             TTEEEEEEEEEESCCCCSS--------------SSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGG
T ss_pred             CCEEEEEEEEEeCCCCcCC--------------CCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhh
Confidence            4689999999999987763              466899999998653     578999999999999999999864322


Q ss_pred             CC-ceEEEEEEECCCCC-CceEEEEEeeccccc
Q psy13645        150 LC-SRIKIQLRDNDPVN-NTVIGTHYIDLKNIS  180 (191)
Q Consensus       150 ~~-~~l~i~v~d~d~~~-d~~iG~~~l~l~~i~  180 (191)
                      +. ..|.|+|||++..+ +++||++.|++..+.
T Consensus        85 ~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~~  117 (145)
T d1dqva2          85 VENVGLSIAVVDYDCIGHNEVIGVCRVGPEAAD  117 (145)
T ss_dssp             GGSCCCCCEEEECCSSSCCEEEEECCCSSCTTC
T ss_pred             cCCCEEEEEEEecCCCCCCcEEEEEEECchHcC
Confidence            22 34999999999988 999999999998763

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.41  E-value=5.2e-13  Score=91.81  Aligned_cols=84  Identities=15%  Similarity=0.198  Sum_probs=66.1

Q ss_pred             eEEEEEEEEecCCCCCChHHHHhhhhhhcCCCCCccCcEEEEEECCe-----eeeeeeecCCCCCccccEEEEEeeCCCC
Q psy13645         76 ARFIIRIYRADGLPKMNSSLVANVKKAFTGETKDLVDPYVQVSFAGL-----TGKTSVKKNSYNPVWNEQIIFSEMFPPL  150 (191)
Q Consensus        76 ~~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~~~nP~wne~~~f~~~~p~~  150 (191)
                      -.+.|.++.+..++.+                .+.+||||+|++.+.     ..+|+++++|+||+|||+|.|.+..   
T Consensus         5 ~~~~~~~~~~~~~~~~----------------~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~---   65 (123)
T d1bdya_           5 LRISFNSYELGSLQAE----------------DDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE---   65 (123)
T ss_dssp             EEEEEEEEECCTTCCC----------------CCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT---
T ss_pred             EEEEEEEeecccCCCC----------------CCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc---
Confidence            3455666666665543                367899999999653     4678889999999999999999742   


Q ss_pred             CceEEEEEEECCCCCCceEEEEEeecccccc
Q psy13645        151 CSRIKIQLRDNDPVNNTVIGTHYIDLKNISN  181 (191)
Q Consensus       151 ~~~l~i~v~d~d~~~d~~iG~~~l~l~~i~~  181 (191)
                      ...|.|.|||+|   ++++|.+.+.+..+..
T Consensus        66 ~~~l~i~V~d~d---d~~~g~~~i~l~~l~~   93 (123)
T d1bdya_          66 GRVIQIVLMRAA---EDPMSEVTVGVSVLAE   93 (123)
T ss_dssp             TCEEEEEEEEET---TEEEEEEEEEHHHHHH
T ss_pred             ccEEEEEEEEcc---ccccCccEEehhheee
Confidence            346999999986   7899999999998854