Psyllid ID: psy13759

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110----
Protein Sequence
MKLLLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVSFKLGQVDRTSFLTAVLVKSDY
Secondary Structure (PSIPRED)
cHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccccHHHHHHHHHcccHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHccHHHccccEccccccccHHHEHEEcccc
Coil and Loop (DISEMBL)
MKLLLTINSDGNFVSKSIKRtqdlvadpnqHVKSALASVIMglspilgkhntvdHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQdvsfklgqvdrtSFLTAVLVKSDY
Flexible Loop (DISEMBL)
mkllltinsdgnfvSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDvsfklgqvdrtsfltavlvksdy
Low Complexity Region (SEG)
MKLLLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVSFKLGQVDRTSFLTAVLVKSDY
Disordered region (IsUnstruct)
************************V****QHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVSFKLGQVDRTSFLTAVLV****
Disordered Region (DISOPRED)
*******NSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVSFKLGQVDRTSFLTAVLVK***
Disordered Region (DISEMBL)
MKLLLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVSFKLGQVDRTSFLTAVLVKSDY
Disordered Region (DISPRO)
*KLLLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVSFKLGQVDRTSFLTAVLVKSD*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKLLLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVSFKLGQVDRTSFLTAVLVKSDY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	114	2.2.26 [Sep-21-2011]
P54612	589	Serine/threonine-protein	yes	N/A	0.605	0.117	0.869	5e-30
Q76MZ3	589	Serine/threonine-protein	yes	N/A	0.605	0.117	0.869	5e-30
P30153	589	Serine/threonine-protein	yes	N/A	0.605	0.117	0.869	5e-30
Q32PI5	589	Serine/threonine-protein	yes	N/A	0.605	0.117	0.855	2e-29
P54613	602	Serine/threonine-protein	no	N/A	0.552	0.104	0.855	5e-29
P30154	601	Serine/threonine-protein	no	N/A	0.552	0.104	0.840	1e-28
P36179	591	Serine/threonine-protein	yes	N/A	0.675	0.130	0.766	3e-28
Q4QQT4	601	Serine/threonine-protein	no	N/A	0.552	0.104	0.840	4e-28
Q7TNP2	601	Serine/threonine-protein	no	N/A	0.552	0.104	0.840	7e-28
Q38845	588	Serine/threonine-protein	yes	N/A	0.587	0.113	0.701	9e-21

>sp|P54612|2AAA_PIG Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Sus scrofa GN=PPP2R1A PE=2 SV=2

 Score =  129 bits (324), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 60/69 (86%), Positives = 67/69 (97%)

Query: 22  QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
           ++LV+D NQHVKSALASVIMGLSPILGK NT++HLLPLFL+QLKDECPEVRLNIISNLDC
Sbjct: 331 KELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDC 390

Query: 82  VNEVIGIQQ 90
           VNEVIGI+Q
Sbjct: 391 VNEVIGIRQ 399

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.
Sus scrofa (taxid: 9823)

>sp|Q76MZ3|2AAA_MOUSE Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Mus musculus GN=Ppp2r1a PE=1 SV=3

 Score =  129 bits (324), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 60/69 (86%), Positives = 67/69 (97%)

Query: 22  QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
           ++LV+D NQHVKSALASVIMGLSPILGK NT++HLLPLFL+QLKDECPEVRLNIISNLDC
Sbjct: 331 KELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDC 390

Query: 82  VNEVIGIQQ 90
           VNEVIGI+Q
Sbjct: 391 VNEVIGIRQ 399

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Mus musculus (taxid: 10090)

>sp|P30153|2AAA_HUMAN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Homo sapiens GN=PPP2R1A PE=1 SV=4

 Score =  129 bits (324), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 60/69 (86%), Positives = 67/69 (97%)

Query: 22  QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
           ++LV+D NQHVKSALASVIMGLSPILGK NT++HLLPLFL+QLKDECPEVRLNIISNLDC
Sbjct: 331 KELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDC 390

Query: 82  VNEVIGIQQ 90
           VNEVIGI+Q
Sbjct: 391 VNEVIGIRQ 399

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Homo sapiens (taxid: 9606)

>sp|Q32PI5|2AAA_BOVIN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Bos taurus GN=PPP2R1A PE=1 SV=1

 Score =  127 bits (319), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 59/69 (85%), Positives = 67/69 (97%)

Query: 22  QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
           ++LV+D NQHVKSALASVIMGLSPILGK +T++HLLPLFL+QLKDECPEVRLNIISNLDC
Sbjct: 331 KELVSDANQHVKSALASVIMGLSPILGKDSTIEHLLPLFLAQLKDECPEVRLNIISNLDC 390

Query: 82  VNEVIGIQQ 90
           VNEVIGI+Q
Sbjct: 391 VNEVIGIRQ 399

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Bos taurus (taxid: 9913)

>sp|P54613|2AAB_PIG Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform (Fragment) OS=Sus scrofa GN=PPP2R1B PE=2 SV=1

 Score =  126 bits (316), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 59/69 (85%), Positives = 66/69 (95%)

Query: 22  QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
           ++LV+D NQHVKSALASVIMGLS ILGK NT++HLLPLFL+QLKDECPEVRLNIISNLDC
Sbjct: 344 KELVSDTNQHVKSALASVIMGLSTILGKENTIEHLLPLFLAQLKDECPEVRLNIISNLDC 403

Query: 82  VNEVIGIQQ 90
           VNEVIGI+Q
Sbjct: 404 VNEVIGIRQ 412

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Sus scrofa (taxid: 9823)

>sp|P30154|2AAB_HUMAN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Homo sapiens GN=PPP2R1B PE=1 SV=3

 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/69 (84%), Positives = 66/69 (95%)

Query: 22  QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
           ++LV+D NQHVKSALASVIMGLS ILGK NT++HLLPLFL+QLKDECP+VRLNIISNLDC
Sbjct: 343 KELVSDTNQHVKSALASVIMGLSTILGKENTIEHLLPLFLAQLKDECPDVRLNIISNLDC 402

Query: 82  VNEVIGIQQ 90
           VNEVIGI+Q
Sbjct: 403 VNEVIGIRQ 411

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Homo sapiens (taxid: 9606)

>sp|P36179|2AAA_DROME Serine/threonine-protein phosphatase PP2A 65 kDa regulatory subunit OS=Drosophila melanogaster GN=Pp2A-29B PE=2 SV=4

 Score =  123 bits (309), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/77 (76%), Positives = 67/77 (87%)

Query: 14  VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRL 73
           +S  +   +DLV+DPN HVKSALASVIMGLSP+LG + TV+ LLPLFL QLKDECPEVRL
Sbjct: 325 LSSILPYVRDLVSDPNPHVKSALASVIMGLSPMLGAYQTVEQLLPLFLIQLKDECPEVRL 384

Query: 74  NIISNLDCVNEVIGIQQ 90
           NIISNLDCVN+VIGIQQ
Sbjct: 385 NIISNLDCVNDVIGIQQ 401

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Drosophila melanogaster (taxid: 7227)

>sp|Q4QQT4|2AAB_RAT Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Rattus norvegicus GN=Ppp2r1b PE=2 SV=1

 Score =  122 bits (307), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 58/69 (84%), Positives = 66/69 (95%)

Query: 22  QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
           ++LV+D NQHVKSALASVIMGLS +LGK NT++HLLPLFL+QLKDECPEVRLNIISNLDC
Sbjct: 343 KELVSDTNQHVKSALASVIMGLSTVLGKENTIEHLLPLFLAQLKDECPEVRLNIISNLDC 402

Query: 82  VNEVIGIQQ 90
           VNEVIGI+Q
Sbjct: 403 VNEVIGIRQ 411

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Rattus norvegicus (taxid: 10116)

>sp|Q7TNP2|2AAB_MOUSE Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Mus musculus GN=Ppp2r1b PE=1 SV=2

 Score =  122 bits (306), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 58/69 (84%), Positives = 66/69 (95%)

Query: 22  QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
           ++LV+D NQHVKSALASVIMGLS +LGK NT++HLLPLFL+QLKDECPEVRLNIISNLDC
Sbjct: 343 KELVSDTNQHVKSALASVIMGLSTVLGKENTIEHLLPLFLAQLKDECPEVRLNIISNLDC 402

Query: 82  VNEVIGIQQ 90
           VNEVIGI+Q
Sbjct: 403 VNEVIGIRQ 411

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Mus musculus (taxid: 10090)

>sp|Q38845|2AAA_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Arabidopsis thaliana GN=PP2AA1 PE=1 SV=1

 Score = 98.6 bits (244), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 47/67 (70%), Positives = 60/67 (89%)

Query: 22  QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
           ++L +D +QHV+SALASVIMG++PILGK +T++HLLP+FLS LKDE P+VRLNIIS LD 
Sbjct: 325 KELSSDSSQHVRSALASVIMGMAPILGKDSTIEHLLPIFLSLLKDEFPDVRLNIISKLDQ 384

Query: 82  VNEVIGI 88
           VN+VIGI
Sbjct: 385 VNQVIGI 391

The A subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Seems to act as a positive regulator of PP2A catalytic activity. Confers resistance to phosphatase inhibitors such as okadaic acid and cantharidin. Involved during developmental process such as seedling and floral developments, root gravitropism, and stomatal opening regulation. Involved in the regulation of auxin efflux, especially during basipetal (tips to base) auxin transport in roots, and appears to contribute to the perception of auxin efflux inhibitors such as 1-N-naphthylphthalamic acid (NPA) and to semicarbazone I (substituted phenylsemicarbazone of 2-acetylarylcarboxylic acids) (SCB-I). Modulates the magnitude of ethylene response in the hypocotyl and stem, and functions as a general positive transducer of early ABA signaling.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
241149342	597	protein phosphatase 2A regulatory subuni	0.605	0.115	0.956	7e-32
242024239	566	serine/threonine-protein phosphatase PP2	0.605	0.121	0.942	1e-31
307189141	601	Serine/threonine-protein phosphatase 2A	0.605	0.114	0.913	4e-31
322787434	589	hypothetical protein SINV_04974 [Solenop	0.605	0.117	0.913	4e-31
307201783	590	Serine/threonine-protein phosphatase 2A	0.605	0.116	0.913	4e-31
332020375	603	Serine/threonine-protein phosphatase 2A	0.605	0.114	0.913	4e-31
156547500	590	PREDICTED: serine/threonine-protein phos	0.605	0.116	0.927	2e-30
427789139	589	Putative protein phosphatase 2a regulato	0.605	0.117	0.942	3e-30
86515392	590	protein phosphatase 2, regulatory subuni	0.605	0.116	0.913	7e-30
328782568	590	PREDICTED: serine/threonine-protein phos	0.728	0.140	0.746	9e-30

>gi|241149342|ref|XP_002406082.1| protein phosphatase 2A regulatory subunit A, putative [Ixodes scapularis] gi|215493805|gb|EEC03446.1| protein phosphatase 2A regulatory subunit A, putative [Ixodes scapularis]

 Score =  140 bits (354), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 66/69 (95%), Positives = 69/69 (100%)

Query: 22  QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
           +DLV+DPNQHVKSALASVIMGLSPILGKHNTV+HLLPLFLSQLKDECPEVRLNIISNLDC
Sbjct: 333 KDLVSDPNQHVKSALASVIMGLSPILGKHNTVEHLLPLFLSQLKDECPEVRLNIISNLDC 392

Query: 82  VNEVIGIQQ 90
           VNEVIGIQQ
Sbjct: 393 VNEVIGIQQ 401

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242024239|ref|XP_002432536.1| serine/threonine-protein phosphatase PP2A 65 kDa regulatory subunit, putative [Pediculus humanus corporis] gi|212517988|gb|EEB19798.1| serine/threonine-protein phosphatase PP2A 65 kDa regulatory subunit, putative [Pediculus humanus corporis]

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/69 (94%), Positives = 69/69 (100%)

Query: 22  QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
           ++LVADPNQHVKSALASVIMGLSPILGKHNT++HLLPLFLSQLKDECPEVRLNIISNLDC
Sbjct: 333 KELVADPNQHVKSALASVIMGLSPILGKHNTIEHLLPLFLSQLKDECPEVRLNIISNLDC 392

Query: 82  VNEVIGIQQ 90
           VNEVIGIQQ
Sbjct: 393 VNEVIGIQQ 401

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307189141|gb|EFN73589.1| Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform [Camponotus floridanus]

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 63/69 (91%), Positives = 69/69 (100%)

Query: 22  QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
           ++LVADPNQHVKSALASVIMGLSPILGKHNT++HLLPLFLSQL+DECPEVRLNIISNL+C
Sbjct: 333 KELVADPNQHVKSALASVIMGLSPILGKHNTIEHLLPLFLSQLRDECPEVRLNIISNLEC 392

Query: 82  VNEVIGIQQ 90
           VNEVIGIQQ
Sbjct: 393 VNEVIGIQQ 401

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322787434|gb|EFZ13522.1| hypothetical protein SINV_04974 [Solenopsis invicta]

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 63/69 (91%), Positives = 69/69 (100%)

Query: 22  QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
           ++LVADPNQHVKSALASVIMGLSPILGKHNT++HLLPLFLSQL+DECPEVRLNIISNL+C
Sbjct: 333 KELVADPNQHVKSALASVIMGLSPILGKHNTIEHLLPLFLSQLRDECPEVRLNIISNLEC 392

Query: 82  VNEVIGIQQ 90
           VNEVIGIQQ
Sbjct: 393 VNEVIGIQQ 401

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307201783|gb|EFN81456.1| Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform [Harpegnathos saltator]

 Score =  138 bits (347), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 63/69 (91%), Positives = 69/69 (100%)

Query: 22  QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
           ++LVADPNQHVKSALASVIMGLSPILGKHNT++HLLPLFLSQL+DECPEVRLNIISNL+C
Sbjct: 333 KELVADPNQHVKSALASVIMGLSPILGKHNTIEHLLPLFLSQLRDECPEVRLNIISNLEC 392

Query: 82  VNEVIGIQQ 90
           VNEVIGIQQ
Sbjct: 393 VNEVIGIQQ 401

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020375|gb|EGI60796.1| Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform [Acromyrmex echinatior]

 Score =  138 bits (347), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 63/69 (91%), Positives = 69/69 (100%)

Query: 22  QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
           ++LVADPNQHVKSALASVIMGLSPILGKHNT++HLLPLFLSQL+DECPEVRLNIISNL+C
Sbjct: 333 KELVADPNQHVKSALASVIMGLSPILGKHNTIEHLLPLFLSQLRDECPEVRLNIISNLEC 392

Query: 82  VNEVIGIQQ 90
           VNEVIGIQQ
Sbjct: 393 VNEVIGIQQ 401

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156547500|ref|XP_001600229.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like [Nasonia vitripennis]

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/69 (92%), Positives = 68/69 (98%)

Query: 22  QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
           ++LVADPNQHVKSALASVIMGLSPILGK NT++HLLPLFLSQLKDECPEVRLNIISNLDC
Sbjct: 333 KELVADPNQHVKSALASVIMGLSPILGKINTIEHLLPLFLSQLKDECPEVRLNIISNLDC 392

Query: 82  VNEVIGIQQ 90
           VNEVIGIQQ
Sbjct: 393 VNEVIGIQQ 401

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427789139|gb|JAA60021.1| Putative protein phosphatase 2a regulatory subunit a [Rhipicephalus pulchellus]

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 65/69 (94%), Positives = 68/69 (98%)

Query: 22  QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
           +DLV+DPNQHVKSALASVIMGLSPILGK NTV+HLLPLFLSQLKDECPEVRLNIISNLDC
Sbjct: 333 KDLVSDPNQHVKSALASVIMGLSPILGKQNTVEHLLPLFLSQLKDECPEVRLNIISNLDC 392

Query: 82  VNEVIGIQQ 90
           VNEVIGIQQ
Sbjct: 393 VNEVIGIQQ 401

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|86515392|ref|NP_001034525.1| protein phosphatase 2, regulatory subunit A, alpha isoform [Tribolium castaneum] gi|60098058|emb|CAI45288.1| phosphatase [Tribolium castaneum] gi|270013845|gb|EFA10293.1| hypothetical protein TcasGA2_TC012508 [Tribolium castaneum]

 Score =  134 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 63/69 (91%), Positives = 69/69 (100%)

Query: 22  QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
           ++LVADPNQHVKSALASVIMGLSPILG+HNT++HLLPLFL+QLKDECPEVRLNIISNLDC
Sbjct: 333 KELVADPNQHVKSALASVIMGLSPILGRHNTIEHLLPLFLTQLKDECPEVRLNIISNLDC 392

Query: 82  VNEVIGIQQ 90
           VNEVIGIQQ
Sbjct: 393 VNEVIGIQQ 401

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328782568|ref|XP_001120202.2| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like [Apis mellifera] gi|380013196|ref|XP_003690652.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like [Apis florea]

 Score =  134 bits (336), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 62/83 (74%), Positives = 74/83 (89%)

Query: 8   NSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDE 67
           N +   +++ +   ++LV+DPNQHVKSALASVIMGLSPILGKHNT++HLLPLFLSQL+DE
Sbjct: 319 NQESIIMTQILPIVKELVSDPNQHVKSALASVIMGLSPILGKHNTIEHLLPLFLSQLRDE 378

Query: 68  CPEVRLNIISNLDCVNEVIGIQQ 90
           C EVRLNIISNL+CVNEVIGIQQ
Sbjct: 379 CSEVRLNIISNLECVNEVIGIQQ 401

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
UNIPROTKB|B3KQV6	410	PPP2R1A "Serine/threonine-prot	0.675	0.187	0.792	5e-28
UNIPROTKB|P30153	589	PPP2R1A "Serine/threonine-prot	0.675	0.130	0.792	2.5e-27
UNIPROTKB|F1PX75	589	PPP2R1A "Uncharacterized prote	0.605	0.117	0.869	3.2e-27
UNIPROTKB|P54612	589	PPP2R1A "Serine/threonine-prot	0.605	0.117	0.869	3.2e-27
MGI|MGI:1926334	589	Ppp2r1a "protein phosphatase 2	0.605	0.117	0.869	3.2e-27
RGD|620907	589	Ppp2r1a "protein phosphatase 2	0.605	0.117	0.869	3.2e-27
UNIPROTKB|A5D973	589	PPP2R1A "Alpha isoform of regu	0.605	0.117	0.855	1.1e-26
UNIPROTKB|Q32PI5	589	PPP2R1A "Serine/threonine-prot	0.605	0.117	0.855	1.1e-26
ZFIN|ZDB-GENE-040927-20	589	ppp2r1b "protein phosphatase 2	0.605	0.117	0.869	1.9e-26
ZFIN|ZDB-GENE-040426-2700	589	ppp2r1a "protein phosphatase 2	0.605	0.117	0.855	2.4e-26

UNIPROTKB|B3KQV6 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Homo sapiens (taxid:9606)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 61/77 (79%), Positives = 71/77 (92%)

Query:    14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRL 73
             +S+ +   ++LV+D NQHVKSALASVIMGLSPILGK NT++HLLPLFL+QLKDECPEVRL
Sbjct:   144 MSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRL 203

Query:    74 NIISNLDCVNEVIGIQQ 90
             NIISNLDCVNEVIGI+Q
Sbjct:   204 NIISNLDCVNEVIGIRQ 220

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

UNIPROTKB|P30153 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Homo sapiens (taxid:9606)]

 Score = 313 (115.2 bits), Expect = 2.5e-27, P = 2.5e-27
 Identities = 61/77 (79%), Positives = 71/77 (92%)

Query:    14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRL 73
             +S+ +   ++LV+D NQHVKSALASVIMGLSPILGK NT++HLLPLFL+QLKDECPEVRL
Sbjct:   323 MSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRL 382

Query:    74 NIISNLDCVNEVIGIQQ 90
             NIISNLDCVNEVIGI+Q
Sbjct:   383 NIISNLDCVNEVIGIRQ 399

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=TAS

GO:0006470 "protein dephosphorylation" evidence=TAS

GO:0015630 "microtubule cytoskeleton" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0005829 "cytosol" evidence=TAS

GO:0005739 "mitochondrion" evidence=NAS

GO:0016020 "membrane" evidence=NAS

GO:0010033 "response to organic substance" evidence=NAS

GO:0006672 "ceramide metabolic process" evidence=NAS

GO:0006917 "induction of apoptosis" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0008380 "RNA splicing" evidence=NAS

GO:0006275 "regulation of DNA replication" evidence=NAS

GO:0045595 "regulation of cell differentiation" evidence=NAS

GO:0030111 "regulation of Wnt receptor signaling pathway" evidence=NAS

GO:0000188 "inactivation of MAPK activity" evidence=NAS

GO:0042518 "negative regulation of tyrosine phosphorylation of Stat3 protein" evidence=NAS

GO:0030155 "regulation of cell adhesion" evidence=NAS

GO:0006461 "protein complex assembly" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0003823 "antigen binding" evidence=IPI

GO:0000159 "protein phosphatase type 2A complex" evidence=IDA;TAS

GO:0019932 "second-messenger-mediated signaling" evidence=NAS

GO:0040008 "regulation of growth" evidence=NAS

GO:0030308 "negative regulation of cell growth" evidence=NAS

GO:0007059 "chromosome segregation" evidence=IDA

GO:0000775 "chromosome, centromeric region" evidence=IDA

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

UNIPROTKB|F1PX75 PPP2R1A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 312 (114.9 bits), Expect = 3.2e-27, P = 3.2e-27
 Identities = 60/69 (86%), Positives = 67/69 (97%)

Query:    22 QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
             ++LV+D NQHVKSALASVIMGLSPILGK NT++HLLPLFL+QLKDECPEVRLNIISNLDC
Sbjct:   331 KELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDC 390

Query:    82 VNEVIGIQQ 90
             VNEVIGI+Q
Sbjct:   391 VNEVIGIRQ 399

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0003823 "antigen binding" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

UNIPROTKB|P54612 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Sus scrofa (taxid:9823)]

 Score = 312 (114.9 bits), Expect = 3.2e-27, P = 3.2e-27
 Identities = 60/69 (86%), Positives = 67/69 (97%)

Query:    22 QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
             ++LV+D NQHVKSALASVIMGLSPILGK NT++HLLPLFL+QLKDECPEVRLNIISNLDC
Sbjct:   331 KELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDC 390

Query:    82 VNEVIGIQQ 90
             VNEVIGI+Q
Sbjct:   391 VNEVIGIRQ 399

GO:0000775 "chromosome, centromeric region" evidence=ISS

GO:0007059 "chromosome segregation" evidence=ISS

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0003823 "antigen binding" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

MGI|MGI:1926334 Ppp2r1a "protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform" [Mus musculus (taxid:10090)]

 Score = 312 (114.9 bits), Expect = 3.2e-27, P = 3.2e-27
 Identities = 60/69 (86%), Positives = 67/69 (97%)

Query:    22 QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
             ++LV+D NQHVKSALASVIMGLSPILGK NT++HLLPLFL+QLKDECPEVRLNIISNLDC
Sbjct:   331 KELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDC 390

Query:    82 VNEVIGIQQ 90
             VNEVIGI+Q
Sbjct:   391 VNEVIGIRQ 399

GO:0000159 "protein phosphatase type 2A complex" evidence=ISO;IDA

GO:0000775 "chromosome, centromeric region" evidence=ISO

GO:0003823 "antigen binding" evidence=ISO

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005694 "chromosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0007059 "chromosome segregation" evidence=ISO

GO:0042981 "regulation of apoptotic process" evidence=IMP

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IDA

RGD|620907 Ppp2r1a "protein phosphatase 2, regulatory subunit A, alpha" [Rattus norvegicus (taxid:10116)]

 Score = 312 (114.9 bits), Expect = 3.2e-27, P = 3.2e-27
 Identities = 60/69 (86%), Positives = 67/69 (97%)

Query:    22 QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
             ++LV+D NQHVKSALASVIMGLSPILGK NT++HLLPLFL+QLKDECPEVRLNIISNLDC
Sbjct:   331 KELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDC 390

Query:    82 VNEVIGIQQ 90
             VNEVIGI+Q
Sbjct:   391 VNEVIGIRQ 399

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA;ISO

GO:0000775 "chromosome, centromeric region" evidence=IEA;ISO

GO:0003823 "antigen binding" evidence=IEA;ISO

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0007059 "chromosome segregation" evidence=IEA;ISO

GO:0042981 "regulation of apoptotic process" evidence=IEA;ISO

GO:0046982 "protein heterodimerization activity" evidence=IEA;ISO

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA;ISO

UNIPROTKB|A5D973 PPP2R1A "Alpha isoform of regulatory subunit A, protein phosphatase 2" [Bos taurus (taxid:9913)]

 Score = 307 (113.1 bits), Expect = 1.1e-26, P = 1.1e-26
 Identities = 59/69 (85%), Positives = 67/69 (97%)

Query:    22 QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
             ++LV+D NQHVKSALASVIMGLSPILGK +T++HLLPLFL+QLKDECPEVRLNIISNLDC
Sbjct:   331 KELVSDANQHVKSALASVIMGLSPILGKDSTIEHLLPLFLAQLKDECPEVRLNIISNLDC 390

Query:    82 VNEVIGIQQ 90
             VNEVIGI+Q
Sbjct:   391 VNEVIGIRQ 399

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0003823 "antigen binding" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

UNIPROTKB|Q32PI5 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Bos taurus (taxid:9913)]

 Score = 307 (113.1 bits), Expect = 1.1e-26, P = 1.1e-26
 Identities = 59/69 (85%), Positives = 67/69 (97%)

Query:    22 QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
             ++LV+D NQHVKSALASVIMGLSPILGK +T++HLLPLFL+QLKDECPEVRLNIISNLDC
Sbjct:   331 KELVSDANQHVKSALASVIMGLSPILGKDSTIEHLLPLFLAQLKDECPEVRLNIISNLDC 390

Query:    82 VNEVIGIQQ 90
             VNEVIGI+Q
Sbjct:   391 VNEVIGIRQ 399

GO:0005737 "cytoplasm" evidence=IDA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

ZFIN|ZDB-GENE-040927-20 ppp2r1b "protein phosphatase 2 (formerly 2A), regulatory subunit A, beta isoform" [Danio rerio (taxid:7955)]

 Score = 305 (112.4 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 60/69 (86%), Positives = 66/69 (95%)

Query:    22 QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
             ++LV+D NQHVKSALASVIMGLS ILGK NTV+HLLPLFL+QLKDECPEVRLNIISNLDC
Sbjct:   331 KELVSDTNQHVKSALASVIMGLSTILGKDNTVEHLLPLFLAQLKDECPEVRLNIISNLDC 390

Query:    82 VNEVIGIQQ 90
             VNEVIGI+Q
Sbjct:   391 VNEVIGIRQ 399

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-040426-2700 ppp2r1a "protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform" [Danio rerio (taxid:7955)]

 Score = 304 (112.1 bits), Expect = 2.4e-26, P = 2.4e-26
 Identities = 59/69 (85%), Positives = 66/69 (95%)

Query:    22 QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
             ++LV+D NQHVKSALASVIMGLS ILGK NT++HLLPLFL+QLKDECPEVRLNIISNLDC
Sbjct:   331 KELVSDTNQHVKSALASVIMGLSTILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDC 390

Query:    82 VNEVIGIQQ 90
             VNEVIGI+Q
Sbjct:   391 VNEVIGIRQ 399

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q32PI5	2AAA_BOVIN	No assigned EC number	0.8550	0.6052	0.1171	yes	N/A
P30153	2AAA_HUMAN	No assigned EC number	0.8695	0.6052	0.1171	yes	N/A
P36179	2AAA_DROME	No assigned EC number	0.7662	0.6754	0.1302	yes	N/A
Q76MZ3	2AAA_MOUSE	No assigned EC number	0.8695	0.6052	0.1171	yes	N/A
Q09543	2AAA_CAEEL	No assigned EC number	0.6142	0.6140	0.1186	yes	N/A
Q54QR9	2AAA_DICDI	No assigned EC number	0.6323	0.5877	0.1147	yes	N/A
Q9UT08	2AAA_SCHPO	No assigned EC number	0.5882	0.5964	0.1152	yes	N/A
P54612	2AAA_PIG	No assigned EC number	0.8695	0.6052	0.1171	yes	N/A
Q38845	2AAA_ARATH	No assigned EC number	0.7014	0.5877	0.1139	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	114
KOG0211|consensus	759		99.11
KOG0211|consensus	759		99.05
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.97
KOG1240|consensus	1431		98.75
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.6
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	98.5
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.49
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	98.4
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	98.36
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	98.3
PRK09687	280	putative lyase; Provisional	98.18
KOG2171|consensus	1075		98.14
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.09
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.99
PRK09687	280	putative lyase; Provisional	97.98
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.9
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.86
KOG2171|consensus	1075		97.85
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	97.76
KOG1243|consensus	690		97.76
KOG2137|consensus	700		97.57
KOG1240|consensus	1431		97.57
KOG1242|consensus	569		97.47
PTZ00429	746	beta-adaptin; Provisional	97.43
KOG2023|consensus	885		97.29
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.26
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.22
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.14
KOG2137|consensus	700		97.14
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	96.93
COG5096	757	Vesicle coat complex, various subunits [Intracellu	96.77
KOG1242|consensus	569		96.74
PF07571	92	DUF1546: Protein of unknown function (DUF1546); In	96.62
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	96.41
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	96.4
COG1413	335	FOG: HEAT repeat [Energy production and conversion	96.31
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.28
KOG1820|consensus	815		96.21
COG1413	335	FOG: HEAT repeat [Energy production and conversion	96.11
KOG1241|consensus	859		96.06
TIGR02270	410	conserved hypothetical protein. Members are found	95.96
PTZ00429	746	beta-adaptin; Provisional	95.87
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	95.84
KOG0213|consensus	1172		95.75
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	95.73
KOG2023|consensus	885		95.67
KOG1949|consensus	1005		95.62
KOG1243|consensus	690		95.32
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	95.21
KOG2032|consensus	533		95.21
KOG1060|consensus	968		95.12
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	95.03
smart00567	30	EZ_HEAT E-Z type HEAT repeats. Present in subunits	95.02
KOG0212|consensus	675		94.66
KOG0166|consensus	514		94.41
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	94.4
KOG1851|consensus	1710		94.28
KOG1061|consensus	734		94.11
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	93.84
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	93.55
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	92.95
TIGR02270	410	conserved hypothetical protein. Members are found	92.95
PF08713	213	DNA_alkylation: DNA alkylation repair enzyme; Inte	92.59
PF12765	42	Cohesin_HEAT: HEAT repeat associated with sister c	92.58
KOG0915|consensus	1702		92.53
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	92.48
COG5096	757	Vesicle coat complex, various subunits [Intracellu	92.46
KOG1241|consensus	859		92.45
KOG4224|consensus	550		92.42
KOG1248|consensus	1176		92.07
KOG0213|consensus	1172		91.94
KOG1967|consensus	1030		91.86
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	91.64
KOG4224|consensus	550		91.61
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	91.55
cd06561	197	AlkD_like A new structural DNA glycosylase. This d	91.29
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	91.12
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	91.01
PF03130	27	HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IP	90.84
KOG2062|consensus	929		90.55
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	90.49
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	90.43
KOG1949|consensus	1005		90.26
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	90.17
COG5116	926	RPN2 26S proteasome regulatory complex component [	90.15
KOG0567|consensus	289		90.14
KOG0166|consensus	514		90.05
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	89.85
KOG2956|consensus	516		89.83
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	89.83
KOG1062|consensus	866		89.77
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	89.74
KOG2259|consensus	823		89.63
KOG2259|consensus	823		89.42
KOG2062|consensus	929		89.1
PF14868	559	DUF4487: Domain of unknown function (DUF4487)	88.56
cd07064	208	AlkD_like_1 A new structural DNA glycosylase conta	88.1
KOG1824|consensus	1233		88.03
KOG1061|consensus	734		87.99
PF12765	42	Cohesin_HEAT: HEAT repeat associated with sister c	87.65
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	87.12
KOG0212|consensus	675		87.0
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	86.92
KOG2025|consensus	892		86.89
KOG0414|consensus	1251		86.55
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	86.13
KOG1820|consensus	815		85.94
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	85.73
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	85.21
COG5116	926	RPN2 26S proteasome regulatory complex component [	84.84
KOG1077|consensus	938		84.67
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	84.43
KOG1248|consensus	1176		84.34
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	83.94
KOG2160|consensus	342		83.82
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	83.46
KOG2025|consensus	892		82.12
COG5098	1128	Chromosome condensation complex Condensin, subunit	82.11
KOG2149|consensus	393		81.96
KOG1078|consensus	865		80.79

>KOG0211|consensus

Probab=99.11  E-value=8.6e-11  Score=102.23  Aligned_cols=107  Identities=24%  Similarity=0.207  Sum_probs=95.9

Q ss_pred             hccCChh-HHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759          5 LTINSDG-NFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN   83 (114)
Q Consensus         5 ~~~~~~~-~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~   83 (114)
                      +..++.+ ...+.+.|.+.++.+|.+|+||+++++.+.++++.+|++.+...+.|.+..+++|+++|+|.+++.+..+++
T Consensus       304 ~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~  383 (759)
T KOG0211|consen  304 LDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLA  383 (759)
T ss_pred             HHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHh
Confidence            3344555 778889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhC----hhhHhhhHhHHHHHHHHHHHHHhh
Q psy13759         84 EVIG----IQQDVSFKLGQVDRTSFLTAVLVK  111 (114)
Q Consensus        84 ~~l~----~~~i~~~iLP~i~~l~~~~~~~~~  111 (114)
                      ..+.    ++...++++|.++.++--.+--|+
T Consensus       384 ~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr  415 (759)
T KOG0211|consen  384 CYLNASCYPNIPDSSILPEVQVLVLDNALHVR  415 (759)
T ss_pred             hhcCcccccccchhhhhHHHHHHHhcccchHH
Confidence            9999    778889999999998865554443

>KOG0211|consensus

Probab=99.05  E-value=1.5e-10  Score=100.77  Aligned_cols=96  Identities=47%  Similarity=0.534  Sum_probs=91.5

Q ss_pred             hhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHH---HhHHHHHhhh
Q psy13759         10 DGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNII---SNLDCVNEVI   86 (114)
Q Consensus        10 ~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~---~~l~~~~~~l   86 (114)
                      ++...++++|.++.++.|.+.+||.+.|..++.+.+.+|++.+.+.++|.++++++|+.++||.+.+   ..+....+++
T Consensus       392 ~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~  471 (759)
T KOG0211|consen  392 PNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVI  471 (759)
T ss_pred             cccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcc
Confidence            7778888999999999999999999999999999999999999999999999999999999999999   8888999999


Q ss_pred             ChhhHhhhHhHHHHHHHHH
Q psy13759         87 GIQQDVSFKLGQVDRTSFL  105 (114)
Q Consensus        87 ~~~~i~~~iLP~i~~l~~~  105 (114)
                      |.+...+..||.+.+++..
T Consensus       472 g~~~~s~slLp~i~el~~d  490 (759)
T KOG0211|consen  472 GISTVSNSLLPAIVELAED  490 (759)
T ss_pred             cchhhhhhhhhhhhhhccc
Confidence            9999999999999887654

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=98.97  E-value=1.9e-09  Score=72.46  Aligned_cols=66  Identities=9%  Similarity=0.112  Sum_probs=59.2

Q ss_pred             hhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhh--hhhHHHHHHhcCCCChHHHHHH
Q psy13759         10 DGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTV--DHLLPLFLSQLKDECPEVRLNI   75 (114)
Q Consensus        10 ~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~--~~llP~~~~LL~D~e~EVR~~a   75 (114)
                      .+...++|+|.+-...+|++|||||++++.+.++++..+.+...  .++.+.+.+++.|.++.||.++
T Consensus        21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a   88 (97)
T PF12755_consen   21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA   88 (97)
T ss_pred             HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH
Confidence            55677889999999999999999999999999999998877754  5788888999999999999887

>KOG1240|consensus

Probab=98.75  E-value=1.4e-08  Score=91.33  Aligned_cols=85  Identities=21%  Similarity=0.276  Sum_probs=80.7

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHhhhHh
Q psy13759         17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVSFKL   96 (114)
Q Consensus        17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~~~iL   96 (114)
                      +-..+..|+.|+.+-||.++-+.+..+|.+||++.+.+.|++++..+|+|.++..|.+...+|.+++-.+|...+.+.|+
T Consensus       579 V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyll  658 (1431)
T KOG1240|consen  579 VEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLL  658 (1431)
T ss_pred             HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHH
Confidence            45566779999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH
Q psy13759         97 GQVDR  101 (114)
Q Consensus        97 P~i~~  101 (114)
                      |++++
T Consensus       659 PLl~Q  663 (1431)
T KOG1240|consen  659 PLLQQ  663 (1431)
T ss_pred             HHHHH
Confidence            99974

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.60  E-value=1.2e-07  Score=56.45  Aligned_cols=52  Identities=23%  Similarity=0.186  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHccccccCcch--hhhhhHHHHHHhcCCCChHHHHHHHHhHHH
Q psy13759         30 QHVKSALASVIMGLSPILGKHN--TVDHLLPLFLSQLKDECPEVRLNIISNLDC   81 (114)
Q Consensus        30 ~~VR~~~a~~l~~la~~lg~e~--~~~~llP~~~~LL~D~e~EVR~~a~~~l~~   81 (114)
                      |+||.+++..|+.+++..+...  ....++|.+..+|+|++.+||.+++..|..
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~   54 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN   54 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence            8999999999999887766543  346899999999999999999999988764

...

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=98.50  E-value=1.3e-07  Score=50.75  Aligned_cols=29  Identities=21%  Similarity=0.322  Sum_probs=15.5

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHcccc
Q psy13759         17 SIKRTQDLVADPNQHVKSALASVIMGLSP   45 (114)
Q Consensus        17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~   45 (114)
                      ++|.+.++++|++|+||.+++..++++++
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            35555555555555555555555555543

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.49  E-value=7.8e-07  Score=56.46  Aligned_cols=58  Identities=28%  Similarity=0.373  Sum_probs=48.4

Q ss_pred             HHHHHH-hcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759         18 IKRTQD-LVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN   83 (114)
Q Consensus        18 lP~l~~-L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~   83 (114)
                      +|.+.+ +.+|++|.||..++..++++.        ....+|.+.++++|+++.||.+++..+..++
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG--------DPEAIPALIELLKDEDPMVRRAAARALGRIG   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT--------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC--------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            345544 559999999999999999654        3377999999999999999999999999874

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=98.40  E-value=4.9e-07  Score=48.51  Aligned_cols=30  Identities=40%  Similarity=0.615  Sum_probs=27.3

Q ss_pred             hHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759         56 LLPLFLSQLKDECPEVRLNIISNLDCVNEV   85 (114)
Q Consensus        56 llP~~~~LL~D~e~EVR~~a~~~l~~~~~~   85 (114)
                      ++|.++++++|++++||.+++..+..+++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            689999999999999999999999999875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=98.36  E-value=4.8e-06  Score=60.68  Aligned_cols=93  Identities=16%  Similarity=0.046  Sum_probs=80.3

Q ss_pred             hHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhh
Q psy13759         11 GNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ   90 (114)
Q Consensus        11 ~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~   90 (114)
                      +.+....+|.+...++|+++.||..+...+..+... |.-..+..++..++.++.|++++||..|..-+.++....+++.
T Consensus        20 ~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~   98 (178)
T PF12717_consen   20 PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNI   98 (178)
T ss_pred             cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchH
Confidence            456777899999999999999999999999887632 4445556788999999999999999999999999999999999


Q ss_pred             HhhhHhHHHHHHHH
Q psy13759         91 DVSFKLGQVDRTSF  104 (114)
Q Consensus        91 i~~~iLP~i~~l~~  104 (114)
                      +.+.+..++..|+.
T Consensus        99 i~~~~~e~i~~l~~  112 (178)
T PF12717_consen   99 IYNNFPELISSLNN  112 (178)
T ss_pred             HHHHHHHHHHHHhC
Confidence            98888888887765

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=98.30  E-value=3e-06  Score=55.53  Aligned_cols=89  Identities=15%  Similarity=0.011  Sum_probs=69.1

Q ss_pred             HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccc---cCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChh-
Q psy13759         14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPI---LGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ-   89 (114)
Q Consensus        14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~---lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~-   89 (114)
                      ...++|.+..+.+|.+|++|..++..+..++..   ..........+|.+.++++|++++||..++..+..++..-+.. 
T Consensus         5 ~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~   84 (120)
T cd00020           5 QAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNK   84 (120)
T ss_pred             HcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHH
Confidence            445889999999999999999999999999964   2234444589999999999999999999999999998865321 


Q ss_pred             -h-HhhhHhHHHHHH
Q psy13759         90 -Q-DVSFKLGQVDRT  102 (114)
Q Consensus        90 -~-i~~~iLP~i~~l  102 (114)
                       . ....++|.+.++
T Consensus        85 ~~~~~~g~l~~l~~~   99 (120)
T cd00020          85 LIVLEAGGVPKLVNL   99 (120)
T ss_pred             HHHHHCCChHHHHHH
Confidence             1 222356665543

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PRK09687 putative lyase; Provisional

Probab=98.18  E-value=6.6e-06  Score=64.31  Aligned_cols=57  Identities=23%  Similarity=0.269  Sum_probs=29.1

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHH
Q psy13759         18 IKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV   82 (114)
Q Consensus        18 lP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~   82 (114)
                      ++.+..+..|++|+||++++..++++.        ....+|.++.+++|++++||..++..|..+
T Consensus       130 ~~~l~~~~~D~~~~VR~~a~~aLg~~~--------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~  186 (280)
T PRK09687        130 VEQSQITAFDKSTNVRFAVAFALSVIN--------DEAAIPLLINLLKDPNGDVRNWAAFALNSN  186 (280)
T ss_pred             HHHHHHHhhCCCHHHHHHHHHHHhccC--------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence            334444455555555555555554432        122445555555555555555555555544

>KOG2171|consensus

Probab=98.14  E-value=1.5e-05  Score=71.71  Aligned_cols=88  Identities=17%  Similarity=0.137  Sum_probs=75.5

Q ss_pred             HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhh---hhHHHHHHhcCCC-ChHHHHHHHHhHHHHHhhhCh
Q psy13759         13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVD---HLLPLFLSQLKDE-CPEVRLNIISNLDCVNEVIGI   88 (114)
Q Consensus        13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~---~llP~~~~LL~D~-e~EVR~~a~~~l~~~~~~l~~   88 (114)
                      ...+|+|.+...++|+.+|||++++..+++++.-++++..+.   .+.|.++..+.|. .+.|..+|+..+.+|.+....
T Consensus       386 ~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~  465 (1075)
T KOG2171|consen  386 NLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK  465 (1075)
T ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH
Confidence            456799999999999999999999999999999999988774   5888999999996 679999999999999999988


Q ss_pred             hhHhhhHhHHHH
Q psy13759         89 QQDVSFKLGQVD  100 (114)
Q Consensus        89 ~~i~~~iLP~i~  100 (114)
                      +.+..++=+.++
T Consensus       466 ~~l~pYLd~lm~  477 (1075)
T KOG2171|consen  466 SILEPYLDGLME  477 (1075)
T ss_pred             HHHHHHHHHHHH
Confidence            776555433333

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.09  E-value=2.3e-05  Score=49.59  Aligned_cols=57  Identities=21%  Similarity=0.286  Sum_probs=48.2

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCC-ChHHHHHHHHhHH
Q psy13759         16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDE-CPEVRLNIISNLD   80 (114)
Q Consensus        16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~-e~EVR~~a~~~l~   80 (114)
                      +.+|.+..+++|++|.||.+++..++.+.        ....+|.+.++++|+ +..||.+++.+|.
T Consensus        31 ~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   31 EAIPALIELLKDEDPMVRRAAARALGRIG--------DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHHHHHHHHHTSSSHHHHHHHHHHHHCCH--------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence            57899999999999999999999999984        356889999988775 6778999988763

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.99  E-value=2.8e-05  Score=63.59  Aligned_cols=77  Identities=21%  Similarity=0.230  Sum_probs=64.4

Q ss_pred             hhccCChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHH
Q psy13759          4 LLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV   82 (114)
Q Consensus         4 l~~~~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~   82 (114)
                      ++... ..+....+.|.+..++.|++|.||..++..+..+.+..+...-.. ++|.+.++++|+++.|+.+|+.-+..+
T Consensus       103 l~~i~-~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i  179 (526)
T PF01602_consen  103 LSNIR-TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI  179 (526)
T ss_dssp             HHHH--SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred             hhhhc-ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence            44433 455677899999999999999999999999999997755443334 899999999999999999999999888

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PRK09687 putative lyase; Provisional

Probab=97.98  E-value=3.6e-05  Score=60.14  Aligned_cols=61  Identities=23%  Similarity=0.276  Sum_probs=51.9

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHH
Q psy13759         16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV   82 (114)
Q Consensus        16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~   82 (114)
                      ..+|.+..+++|++|.||+.++..++.+..      .....+|.+.++++|+.++||..++..|.++
T Consensus       159 ~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~------~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~  219 (280)
T PRK09687        159 AAIPLLINLLKDPNGDVRNWAAFALNSNKY------DNPDIREAFVAMLQDKNEEIRIEAIIGLALR  219 (280)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHhcCCC------CCHHHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence            467888889999999999999999999821      1235779999999999999999999999764

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.90  E-value=7.7e-05  Score=50.05  Aligned_cols=73  Identities=19%  Similarity=0.163  Sum_probs=55.6

Q ss_pred             HHHHHHHHHccccccCcchhh--hhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHhhhHhHHHHHHHHHH
Q psy13759         33 KSALASVIMGLSPILGKHNTV--DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVSFKLGQVDRTSFLT  106 (114)
Q Consensus        33 R~~~a~~l~~la~~lg~e~~~--~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~~~iLP~i~~l~~~~  106 (114)
                      |++---.+..++-.+|++...  ++|+|.++..+.|+++.||..+.+++.++++..+.+.+ .++-..|..|+.+.
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l-~~f~~IF~~L~kl~   77 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEIL-PYFNEIFDALCKLS   77 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            555556666777777776443  68999999999999999999999999999999987543 35555555555543

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.86  E-value=8.8e-05  Score=54.94  Aligned_cols=75  Identities=17%  Similarity=0.132  Sum_probs=58.8

Q ss_pred             Hhh-HHHHHHhcCCCCHHHHHHHHHHHHccccccC---cchh----hhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhh
Q psy13759         15 SKS-IKRTQDLVADPNQHVKSALASVIMGLSPILG---KHNT----VDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVI   86 (114)
Q Consensus        15 ~~i-lP~l~~L~~D~s~~VR~~~a~~l~~la~~lg---~e~~----~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l   86 (114)
                      ..+ .+.+....+++||.||..+++.+..+.+..|   ....    .+.++|.+..++.|..++||.++-..+..+.+..
T Consensus       129 ~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~  208 (228)
T PF12348_consen  129 PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHF  208 (228)
T ss_dssp             -HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence            344 7888899999999999999999999988888   2222    2569999999999999999999999999999998


Q ss_pred             Chh
Q psy13759         87 GIQ   89 (114)
Q Consensus        87 ~~~   89 (114)
                      |..
T Consensus       209 ~~~  211 (228)
T PF12348_consen  209 PER  211 (228)
T ss_dssp             -HH
T ss_pred             CHh
Confidence            865

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG2171|consensus

Probab=97.85  E-value=8.1e-05  Score=67.13  Aligned_cols=98  Identities=10%  Similarity=0.069  Sum_probs=83.0

Q ss_pred             chhccCChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhh--hhhHHHHHHhcCCCChHHHHHHHHhHH
Q psy13759          3 LLLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTV--DHLLPLFLSQLKDECPEVRLNIISNLD   80 (114)
Q Consensus         3 ~l~~~~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~--~~llP~~~~LL~D~e~EVR~~a~~~l~   80 (114)
                      .|..+++++.+..-++|.+..+++.++|+=|.+.--.|..+++--++.+-.  ..++|+.++.++|++|.||-+|.+.+.
T Consensus       335 rlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naig  414 (1075)
T KOG2171|consen  335 RLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIG  414 (1075)
T ss_pred             HHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence            356778999999999999999999999999999999999988766655544  479999999999999999999999999


Q ss_pred             HHHhhhChhh---HhhhHhHHHH
Q psy13759         81 CVNEVIGIQQ---DVSFKLGQVD  100 (114)
Q Consensus        81 ~~~~~l~~~~---i~~~iLP~i~  100 (114)
                      .++.-+.|+.   .-+.++|.+.
T Consensus       415 Q~stdl~p~iqk~~~e~l~~aL~  437 (1075)
T KOG2171|consen  415 QMSTDLQPEIQKKHHERLPPALI  437 (1075)
T ss_pred             hhhhhhcHHHHHHHHHhccHHHH
Confidence            9999988874   3345555543

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=97.76  E-value=0.00012  Score=47.79  Aligned_cols=69  Identities=12%  Similarity=0.095  Sum_probs=58.9

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHccccccCc--c-hhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759         16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILGK--H-NTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE   84 (114)
Q Consensus        16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~--e-~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~   84 (114)
                      .++|.+..+.+|++++||..++..+..++..-+.  + .....++|.+.++++|.+.++|..++..+..+++
T Consensus        49 ~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          49 GGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             CChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            7999999999999999999999999999976532  2 2224689999999999999999999998887763

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG1243|consensus

Probab=97.76  E-value=0.00011  Score=63.73  Aligned_cols=100  Identities=14%  Similarity=0.133  Sum_probs=92.5

Q ss_pred             hhccCChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759          4 LLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN   83 (114)
Q Consensus         4 l~~~~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~   83 (114)
                      +|+.++.+++...++|++.+|..-..-.||..+-+.+.+..+++.++...+.++|.+..-+.|+++-+|...+..+..++
T Consensus       318 ~~k~ld~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La  397 (690)
T KOG1243|consen  318 LGKDLDEEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLA  397 (690)
T ss_pred             hhhhccccccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHH
Confidence            46777888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhChhhHhhhHhHHHHHHH
Q psy13759         84 EVIGIQQDVSFKLGQVDRTS  103 (114)
Q Consensus        84 ~~l~~~~i~~~iLP~i~~l~  103 (114)
                      ..++..++-..++-++.++.
T Consensus       398 ~kL~~~~Ln~Ellr~~ar~q  417 (690)
T KOG1243|consen  398 PKLSKRNLNGELLRYLARLQ  417 (690)
T ss_pred             hhhchhhhcHHHHHHHHhhC
Confidence            99999887777777776654

>KOG2137|consensus

Probab=97.57  E-value=0.00023  Score=61.85  Aligned_cols=104  Identities=15%  Similarity=0.139  Sum_probs=88.5

Q ss_pred             hhccCChhHHHHhhHHHHHHhcC-CCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHH
Q psy13759          4 LLTINSDGNFVSKSIKRTQDLVA-DPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV   82 (114)
Q Consensus         4 l~~~~~~~~~~~~ilP~l~~L~~-D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~   82 (114)
                      ++..++..++..+++|.+....+ -.+-+++-.+-++..-|.+.+.++...++++|.+..-++|++..+...++..++.+
T Consensus       337 i~~~~s~~~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv  416 (700)
T KOG2137|consen  337 IAEGLSQNEFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTV  416 (700)
T ss_pred             hhhccchhhhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHH
Confidence            34456777778888888877666 55667888888888889999999999999999999999999999999999999999


Q ss_pred             HhhhChhhHhhhHhHHHHHHHHHHH
Q psy13759         83 NEVIGIQQDVSFKLGQVDRTSFLTA  107 (114)
Q Consensus        83 ~~~l~~~~i~~~iLP~i~~l~~~~~  107 (114)
                      ++.++...+.+.|+|.+..+.|.|.
T Consensus       417 ~e~iD~~~vk~~ilP~l~~l~~~tt  441 (700)
T KOG2137|consen  417 AESIDVPFVKQAILPRLKNLAFKTT  441 (700)
T ss_pred             HHhccHHHHHHHHHHHhhcchhccc
Confidence            9999988899999999999977664

>KOG1240|consensus

Probab=97.57  E-value=0.00013  Score=66.45  Aligned_cols=96  Identities=17%  Similarity=0.194  Sum_probs=81.6

Q ss_pred             hhccCChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759          4 LLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN   83 (114)
Q Consensus         4 l~~~~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~   83 (114)
                      ||..+..+.--+.||+.+...++|+.|+.|.++=+.|.++|-.+|.....+.++|++.+=|.|.|.-|=..|++.+..++
T Consensus       605 LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Li  684 (1431)
T KOG1240|consen  605 LCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILI  684 (1431)
T ss_pred             HHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHH
Confidence            45556666666679999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhhCh-----hhHhhhHhHHH
Q psy13759         84 EVIGI-----QQDVSFKLGQV   99 (114)
Q Consensus        84 ~~l~~-----~~i~~~iLP~i   99 (114)
                      +.=--     -.+.+.++|++
T Consensus       685 k~~ll~K~~v~~i~~~v~PlL  705 (1431)
T KOG1240|consen  685 KLGLLRKPAVKDILQDVLPLL  705 (1431)
T ss_pred             HhcccchHHHHHHHHhhhhhe
Confidence            75321     13556666664

>KOG1242|consensus

Probab=97.47  E-value=0.00041  Score=59.27  Aligned_cols=96  Identities=19%  Similarity=0.095  Sum_probs=75.9

Q ss_pred             cchhccCChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcc--hhhhhhHHHHHHhcCCCChHHHHHHHHhH
Q psy13759          2 KLLLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKH--NTVDHLLPLFLSQLKDECPEVRLNIISNL   79 (114)
Q Consensus         2 ~~l~~~~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e--~~~~~llP~~~~LL~D~e~EVR~~a~~~l   79 (114)
                      |.+-.++++.....-+.|.+..+..+ .||=..+..+.++.++..-++.  .+...++|.+.+-|.|.-+|||.++.+.+
T Consensus       241 kai~~~~~~~aVK~llpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l  319 (569)
T KOG1242|consen  241 KAIMRCLSAYAVKLLLPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETL  319 (569)
T ss_pred             HHHHHhcCcchhhHhhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHH
Confidence            34555667777665555555666666 9999999999999888777764  44468999999999999999999999999


Q ss_pred             HHHHhhhChhhHhhhHhHHH
Q psy13759         80 DCVNEVIGIQQDVSFKLGQV   99 (114)
Q Consensus        80 ~~~~~~l~~~~i~~~iLP~i   99 (114)
                      .+++..+.-..| +.++|.+
T Consensus       320 ~~~~svidN~dI-~~~ip~L  338 (569)
T KOG1242|consen  320 LKFGSVIDNPDI-QKIIPTL  338 (569)
T ss_pred             HHHHHhhccHHH-HHHHHHH
Confidence            999999976654 5666665

>PTZ00429 beta-adaptin; Provisional

Probab=97.43  E-value=0.0011  Score=58.43  Aligned_cols=77  Identities=18%  Similarity=0.078  Sum_probs=65.8

Q ss_pred             hhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhh
Q psy13759         10 DGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVI   86 (114)
Q Consensus        10 ~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l   86 (114)
                      -..+...+++.+++++.|+++.||.++|-.+..+-+.-+.-.....+++.+.+|+.|+++.|..+|+..+..+++.-
T Consensus       134 ~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~  210 (746)
T PTZ00429        134 VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYG  210 (746)
T ss_pred             cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhC
Confidence            34467788999999999999999999999999987666544445578999999999999999999999999998643

>KOG2023|consensus

Probab=97.29  E-value=0.00036  Score=60.87  Aligned_cols=95  Identities=14%  Similarity=0.105  Sum_probs=77.2

Q ss_pred             hhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHcccccc--CcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759         10 DGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPIL--GKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG   87 (114)
Q Consensus        10 ~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~l--g~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~   87 (114)
                      ++++...++|.++..+....|-||.+..-+++.||+--  |--.---+++|+++++|.|.-|=||....=.++.+++++-
T Consensus       387 ~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~  466 (885)
T KOG2023|consen  387 GDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVV  466 (885)
T ss_pred             HHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHh
Confidence            56678889999999999999999999888888887421  1111123689999999999999999999999999999997


Q ss_pred             hhhHhhhHhHHHHHHHH
Q psy13759         88 IQQDVSFKLGQVDRTSF  104 (114)
Q Consensus        88 ~~~i~~~iLP~i~~l~~  104 (114)
                      .+.--+++.|.+..|-+
T Consensus       467 ~~~~~~~f~pvL~~ll~  483 (885)
T KOG2023|consen  467 QDSRDEYFKPVLEGLLR  483 (885)
T ss_pred             cCChHhhhHHHHHHHHH
Confidence            77666778888776644

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.26  E-value=0.0011  Score=59.01  Aligned_cols=56  Identities=18%  Similarity=0.239  Sum_probs=39.7

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHH
Q psy13759         19 KRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV   82 (114)
Q Consensus        19 P~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~   82 (114)
                      +.+...++|++|.||.+++..+..+.        ...-+|.+..+|+|+.+.||.+++..|..+
T Consensus       810 ~~l~~aL~d~d~~VR~~Aa~aL~~l~--------~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~  865 (897)
T PRK13800        810 AAATAALRASAWQVRQGAARALAGAA--------ADVAVPALVEALTDPHLDVRKAAVLALTRW  865 (897)
T ss_pred             HHHHHHhcCCChHHHHHHHHHHHhcc--------ccchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence            34555667777777777777776654        123457888888888888888888888775

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.22  E-value=0.0031  Score=51.61  Aligned_cols=86  Identities=14%  Similarity=0.136  Sum_probs=67.4

Q ss_pred             HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHh
Q psy13759         13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDV   92 (114)
Q Consensus        13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~   92 (114)
                      ...-+...+++-++|+++.+|..+-..+..++    .....+.+.|.+.+++.|+.|.||.+|+..+.++.+. .|+.+.
T Consensus        76 ~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~----~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~-~p~~~~  150 (526)
T PF01602_consen   76 LLILIINSLQKDLNSPNPYIRGLALRTLSNIR----TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRK-DPDLVE  150 (526)
T ss_dssp             HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CHCCHH
T ss_pred             HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc----ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc-CHHHHH
Confidence            45557888888899999999999999888877    3334467999999999999999999999999999887 454443


Q ss_pred             hhHhHHHHHHH
Q psy13759         93 SFKLGQVDRTS  103 (114)
Q Consensus        93 ~~iLP~i~~l~  103 (114)
                      ..++|.+.++-
T Consensus       151 ~~~~~~l~~lL  161 (526)
T PF01602_consen  151 DELIPKLKQLL  161 (526)
T ss_dssp             GGHHHHHHHHT
T ss_pred             HHHHHHHhhhc
Confidence            22566666553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.14  E-value=0.0021  Score=57.33  Aligned_cols=62  Identities=23%  Similarity=0.318  Sum_probs=44.0

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhh
Q psy13759         17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVI   86 (114)
Q Consensus        17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l   86 (114)
                      -++.+...++|+++.||..++..+.++.        ....+|.+..+|+|++++||.+++..+.++.+..
T Consensus       622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~--------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~  683 (897)
T PRK13800        622 SVAELAPYLADPDPGVRRTAVAVLTETT--------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL  683 (897)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHhhhc--------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc
Confidence            3455566667888888888888777764        2346677777788888888888888777765443

>KOG2137|consensus

Probab=97.14  E-value=0.0024  Score=55.75  Aligned_cols=101  Identities=10%  Similarity=0.064  Sum_probs=93.0

Q ss_pred             cchhccCChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCC-CChHHHHHHHHhHH
Q psy13759          2 KLLLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKD-ECPEVRLNIISNLD   80 (114)
Q Consensus         2 ~~l~~~~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D-~e~EVR~~a~~~l~   80 (114)
                      -+|.+-++++++.++|+|++....+|..-++-..+-..+.-+++.+.-...++.++|-+-++.-- +...||.+++-.+.
T Consensus       375 dlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~  454 (700)
T KOG2137|consen  375 DLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLA  454 (700)
T ss_pred             HHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHH
Confidence            34666789999999999999999999999999999999999999999888889999999998655 68999999999999


Q ss_pred             HHHhhhChhhHhhhHhHHHHHH
Q psy13759         81 CVNEVIGIQQDVSFKLGQVDRT  102 (114)
Q Consensus        81 ~~~~~l~~~~i~~~iLP~i~~l  102 (114)
                      ++.+.++.-.++..++|+.+..
T Consensus       455 ~l~q~lD~~~v~d~~lpi~~~~  476 (700)
T KOG2137|consen  455 GLIQRLDKAAVLDELLPILKCI  476 (700)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHh
Confidence            9999999999999999999876

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=96.93  E-value=0.012  Score=43.54  Aligned_cols=73  Identities=16%  Similarity=0.214  Sum_probs=56.4

Q ss_pred             HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759         13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG   87 (114)
Q Consensus        13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~   87 (114)
                      ....++|.+-..+.|++.-||.++...+..+++..+  ....-+.+.+...+++..+.||..++.-+..+.+..|
T Consensus        91 ~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~  163 (228)
T PF12348_consen   91 YADILLPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWG  163 (228)
T ss_dssp             HHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence            467799999999999999999999999999999877  1122348999999999999999999999999988888

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=96.77  E-value=0.0055  Score=54.12  Aligned_cols=77  Identities=19%  Similarity=0.238  Sum_probs=67.6

Q ss_pred             CChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhh-hHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759          8 NSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDH-LLPLFLSQLKDECPEVRLNIISNLDCVNEV   85 (114)
Q Consensus         8 ~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~-llP~~~~LL~D~e~EVR~~a~~~l~~~~~~   85 (114)
                      ++-.++...+++.++++.+|+++.||..+|-++.++= .++++...+. ++=+...|+.|++|.|-.+|..++..+.+-
T Consensus       119 l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly-~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         119 LRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLY-RLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             cChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH-hcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            4667788889999999999999999999999998875 4567777776 888999999999999999999999988776

>KOG1242|consensus

Probab=96.74  E-value=0.004  Score=53.34  Aligned_cols=89  Identities=19%  Similarity=0.223  Sum_probs=76.5

Q ss_pred             HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhh----hhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChh
Q psy13759         14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTV----DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ   89 (114)
Q Consensus        14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~----~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~   89 (114)
                      ...++|.+++-+.++|...+...|..+..+|..+......    ..|+|-+-.-+.|..||||..++..+..+.+-+|.+
T Consensus       370 LalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~  449 (569)
T KOG1242|consen  370 LALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEV  449 (569)
T ss_pred             HHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhh
Confidence            5668999999999999999999999999999988433333    478889999999999999999999999999999988


Q ss_pred             hHhhhHhHHHHHHH
Q psy13759         90 QDVSFKLGQVDRTS  103 (114)
Q Consensus        90 ~i~~~iLP~i~~l~  103 (114)
                      .+ ...+|.+.++-
T Consensus       450 ~f-~d~~p~l~e~~  462 (569)
T KOG1242|consen  450 SF-DDLIPELSETL  462 (569)
T ss_pred             cc-cccccHHHHhh
Confidence            77 67778877654

>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6)

Probab=96.62  E-value=0.0062  Score=40.33  Aligned_cols=71  Identities=14%  Similarity=0.148  Sum_probs=55.9

Q ss_pred             CCCCHHHHHHHHHHHHccccccCcch--hhhhhHHHHHHhcCCC--ChHHHHHHHHhHHHHHhhhChhhHhhhHhHHHH
Q psy13759         26 ADPNQHVKSALASVIMGLSPILGKHN--TVDHLLPLFLSQLKDE--CPEVRLNIISNLDCVNEVIGIQQDVSFKLGQVD  100 (114)
Q Consensus        26 ~D~s~~VR~~~a~~l~~la~~lg~e~--~~~~llP~~~~LL~D~--e~EVR~~a~~~l~~~~~~l~~~~i~~~iLP~i~  100 (114)
                      .|..|.+|.-+|+.+..++..+|...  ....+...+.+-+.|+  ....+-.|+..+..+    |++.+..-|+|.++
T Consensus        16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l----G~~~vr~~ilP~l~   90 (92)
T PF07571_consen   16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL----GPEAVRALILPNLK   90 (92)
T ss_pred             CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH----HHHHHHHhhccCcC
Confidence            57899999999999999999999643  4568999999999986  444555555555444    88888888999764

; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=96.41  E-value=0.0037  Score=54.63  Aligned_cols=88  Identities=17%  Similarity=0.186  Sum_probs=73.5

Q ss_pred             HHhhHHHHHHhcCCC-CHHHHHHHHHHHHccccccCcchhh--hhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhCh--
Q psy13759         14 VSKSIKRTQDLVADP-NQHVKSALASVIMGLSPILGKHNTV--DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGI--   88 (114)
Q Consensus        14 ~~~ilP~l~~L~~D~-s~~VR~~~a~~l~~la~~lg~e~~~--~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~--   88 (114)
                      ..+++|+++.++..+ ||.-|..--....+||..+|...-.  ..++.++-.+++|...-||.-++.+++.+++..||  
T Consensus       314 v~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pyg  393 (975)
T COG5181         314 VEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYG  393 (975)
T ss_pred             cHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcc
Confidence            467999999999877 9999999999999999999976654  46899999999999999999999999999999875  


Q ss_pred             -hhHhhhHhHHHHH
Q psy13759         89 -QQDVSFKLGQVDR  101 (114)
Q Consensus        89 -~~i~~~iLP~i~~  101 (114)
                       +++-+-+=|.-+.
T Consensus       394 ie~fd~vl~pLw~g  407 (975)
T COG5181         394 IEQFDEVLCPLWEG  407 (975)
T ss_pred             hHHHHHHHHHHHHH
Confidence             3444444455443

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=96.40  E-value=0.02  Score=48.11  Aligned_cols=78  Identities=17%  Similarity=0.137  Sum_probs=65.2

Q ss_pred             CChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCc--c-hhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759          8 NSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGK--H-NTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE   84 (114)
Q Consensus         8 ~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~--e-~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~   84 (114)
                      .++.....++.|.+...+..+++.||..++..+..+++.-+.  + .....++|.+..++.|++.+|...|++.+..+++
T Consensus        69 ~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~  148 (503)
T PF10508_consen   69 LSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS  148 (503)
T ss_pred             cCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC
Confidence            456666888999999999999999999999998887643321  1 2335799999999999999999999999999987


Q ss_pred             h
Q psy13759         85 V   85 (114)
Q Consensus        85 ~   85 (114)
                      .
T Consensus       149 ~  149 (503)
T PF10508_consen  149 H  149 (503)
T ss_pred             C
Confidence            4

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=96.31  E-value=0.021  Score=44.57  Aligned_cols=61  Identities=21%  Similarity=0.324  Sum_probs=35.2

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcC-CCChHHHHHHHHhHHHHHh
Q psy13759         16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLK-DECPEVRLNIISNLDCVNE   84 (114)
Q Consensus        16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~-D~e~EVR~~a~~~l~~~~~   84 (114)
                      ..+|.+..++.|.++.||..++..++++.        ...-+|.++++++ |+..-||..++..+.++..
T Consensus        74 ~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~  135 (335)
T COG1413          74 EAVPLLRELLSDEDPRVRDAAADALGELG--------DPEAVPPLVELLENDENEGVRAAAARALGKLGD  135 (335)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHccC--------ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc
Confidence            35666666666666666666666554433        1233455555555 6666666666666665443

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=96.28  E-value=0.01  Score=34.72  Aligned_cols=31  Identities=19%  Similarity=0.301  Sum_probs=27.8

Q ss_pred             HHHhhHHHHHHhcCCCCHHHHHHHHHHHHcc
Q psy13759         13 FVSKSIKRTQDLVADPNQHVKSALASVIMGL   43 (114)
Q Consensus        13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~l   43 (114)
                      ...+++|.+..+++|++.+||..++..+++|
T Consensus        25 ~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen   25 YLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            5667999999999999999999999998864

...

>KOG1820|consensus

Probab=96.21  E-value=0.03  Score=50.04  Aligned_cols=86  Identities=19%  Similarity=0.210  Sum_probs=70.1

Q ss_pred             HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccC----cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChh
Q psy13759         14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILG----KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ   89 (114)
Q Consensus        14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg----~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~   89 (114)
                      .+.+.+.+-..+.+.+++.|..+..-+...-+..|    ...+...++|.++...+|.+.+||.++.+.+..+.+..|.+
T Consensus       369 l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~  448 (815)
T KOG1820|consen  369 LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEE  448 (815)
T ss_pred             HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHH
Confidence            45577888889999999999987776666555555    45556789999999999999999999999999999999998


Q ss_pred             hHhhhHhHHH
Q psy13759         90 QDVSFKLGQV   99 (114)
Q Consensus        90 ~i~~~iLP~i   99 (114)
                      .+...+-+.-
T Consensus       449 ~~~k~L~~~~  458 (815)
T KOG1820|consen  449 VFKKLLKDLD  458 (815)
T ss_pred             HHHHHHHhhc
Confidence            7755554443

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=96.11  E-value=0.043  Score=42.74  Aligned_cols=73  Identities=22%  Similarity=0.267  Sum_probs=56.2

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHhhhH
Q psy13759         16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVSFK   95 (114)
Q Consensus        16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~~~i   95 (114)
                      ...+.+..+..|++|.||..++..++++.        ....+|.+.+++.|+++.||..++..+.++    |.+.....+
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~--------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~----~~~~a~~~l  110 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELG--------SEEAVPLLRELLSDEDPRVRDAAADALGEL----GDPEAVPPL  110 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhc--------hHHHHHHHHHHhcCCCHHHHHHHHHHHHcc----CChhHHHHH
Confidence            36777888999999999999999977665        457899999999999999999999955544    333333445


Q ss_pred             hHHHH
Q psy13759         96 LGQVD  100 (114)
Q Consensus        96 LP~i~  100 (114)
                      ++.+.
T Consensus       111 i~~l~  115 (335)
T COG1413         111 VELLE  115 (335)
T ss_pred             HHHHH
Confidence            55544

>KOG1241|consensus

Probab=96.06  E-value=0.019  Score=50.86  Aligned_cols=80  Identities=10%  Similarity=0.096  Sum_probs=67.0

Q ss_pred             ChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhh---hhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759          9 SDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTV---DHLLPLFLSQLKDECPEVRLNIISNLDCVNEV   85 (114)
Q Consensus         9 ~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~---~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~   85 (114)
                      -.+.+..+++|+++.-.+.++||=|.+.+-.|+.+-+--.++.-+   ...+|.+++++.|+.--||-.++-.+..+++.
T Consensus       357 ~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~  436 (859)
T KOG1241|consen  357 VGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADF  436 (859)
T ss_pred             hcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhh
Confidence            456678899999999999999999999999999876433333332   35799999999999999999999999999988


Q ss_pred             hCh
Q psy13759         86 IGI   88 (114)
Q Consensus        86 l~~   88 (114)
                      +..
T Consensus       437 l~e  439 (859)
T KOG1241|consen  437 LPE  439 (859)
T ss_pred             chh
Confidence            763

>TIGR02270 conserved hypothetical protein

Probab=95.96  E-value=0.021  Score=47.14  Aligned_cols=58  Identities=16%  Similarity=0.086  Sum_probs=43.7

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759         18 IKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN   83 (114)
Q Consensus        18 lP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~   83 (114)
                      .+.+..+++|.++.||.+++..++.+..        ...+|.+...++|++++||.+++..+..++
T Consensus       149 ~~~L~~~L~d~d~~Vra~A~raLG~l~~--------~~a~~~L~~al~d~~~~VR~aA~~al~~lG  206 (410)
T TIGR02270       149 GPALEAALTHEDALVRAAALRALGELPR--------RLSESTLRLYLRDSDPEVRFAALEAGLLAG  206 (410)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhhcc--------ccchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence            3455566678888888888888877662        245677778899999999999998886553

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PTZ00429 beta-adaptin; Provisional

Probab=95.87  E-value=0.075  Score=47.08  Aligned_cols=84  Identities=11%  Similarity=0.014  Sum_probs=64.2

Q ss_pred             HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhH-h
Q psy13759         14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQD-V   92 (114)
Q Consensus        14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i-~   92 (114)
                      .--.++.+++-++|+++.||..+-..++.|.    .....+.+++.+.+.+.|..|-||++|+-.+.++-+. .++.+ .
T Consensus       103 alLaINtl~KDl~d~Np~IRaLALRtLs~Ir----~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~-~pelv~~  177 (746)
T PTZ00429        103 ALLAVNTFLQDTTNSSPVVRALAVRTMMCIR----VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHD-DMQLFYQ  177 (746)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC----cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-Ccccccc
Confidence            3446888899999999999999988887755    2334567889999999999999999999999998664 33332 2


Q ss_pred             hhHhHHHHHH
Q psy13759         93 SFKLGQVDRT  102 (114)
Q Consensus        93 ~~iLP~i~~l  102 (114)
                      ..++|.+.++
T Consensus       178 ~~~~~~L~~L  187 (746)
T PTZ00429        178 QDFKKDLVEL  187 (746)
T ss_pred             cchHHHHHHH
Confidence            3456666554

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=95.84  E-value=0.021  Score=31.68  Aligned_cols=31  Identities=23%  Similarity=0.209  Sum_probs=26.7

Q ss_pred             hhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759         53 VDHLLPLFLSQLKDECPEVRLNIISNLDCVN   83 (114)
Q Consensus        53 ~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~   83 (114)
                      ....+|.+++||++++.+||..++..+.+++
T Consensus        10 ~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen   10 EAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             HTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             HcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            3468999999999999999999999888776

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG0213|consensus

Probab=95.75  E-value=0.044  Score=48.99  Aligned_cols=89  Identities=13%  Similarity=0.065  Sum_probs=73.0

Q ss_pred             HHhhHHHHHHhcCCC-CHHHHHHHHHHHHccccccCcchhh--hhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhCh--
Q psy13759         14 VSKSIKRTQDLVADP-NQHVKSALASVIMGLSPILGKHNTV--DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGI--   88 (114)
Q Consensus        14 ~~~ilP~l~~L~~D~-s~~VR~~~a~~l~~la~~lg~e~~~--~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~--   88 (114)
                      ...++|+++.++..+ ||+-|..--....+||..+|-..-.  ..++.++.+.++|+..-||..++..++.+++..+|  
T Consensus       509 ip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pyg  588 (1172)
T KOG0213|consen  509 IPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYG  588 (1172)
T ss_pred             cHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcc
Confidence            456899999999987 9999999988889999999976554  47899999999999999999999999999998754  


Q ss_pred             -hhHhhhHhHHHHHH
Q psy13759         89 -QQDVSFKLGQVDRT  102 (114)
Q Consensus        89 -~~i~~~iLP~i~~l  102 (114)
                       +.+-+-+=|.-+..
T Consensus       589 ie~fDsVlkpLwkgi  603 (1172)
T KOG0213|consen  589 IEQFDSVLKPLWKGI  603 (1172)
T ss_pred             hHHHHHHHHHHHHHH
Confidence             45544455555443

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=95.73  E-value=0.11  Score=37.67  Aligned_cols=88  Identities=16%  Similarity=-0.002  Sum_probs=62.6

Q ss_pred             HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCC--------CChHHHHHHHHhHHHHHh-
Q psy13759         14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKD--------ECPEVRLNIISNLDCVNE-   84 (114)
Q Consensus        14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D--------~e~EVR~~a~~~l~~~~~-   84 (114)
                      ..+++..+-.+..|++++||..+...|.++....+++...+.+..++..|-+-        ...+-|..+..-+-.+.+ 
T Consensus        61 k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~  140 (178)
T PF12717_consen   61 KGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK  140 (178)
T ss_pred             hhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc
Confidence            34455666678899999999999999999998888888888888777777763        345556666665555544 


Q ss_pred             hhChhhHhhhHhHHHHH
Q psy13759         85 VIGIQQDVSFKLGQVDR  101 (114)
Q Consensus        85 ~l~~~~i~~~iLP~i~~  101 (114)
                      --..+.+.+++.+.+..
T Consensus       141 d~~~~~l~~kl~~~~~~  157 (178)
T PF12717_consen  141 DKQKESLVEKLCQRFLN  157 (178)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33344566666665543

>KOG2023|consensus

Probab=95.67  E-value=0.018  Score=50.63  Aligned_cols=91  Identities=16%  Similarity=0.121  Sum_probs=74.7

Q ss_pred             HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhc---CCCChHHHHHHHHhHHHHHhhhChhhH
Q psy13759         15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQL---KDECPEVRLNIISNLDCVNEVIGIQQD   91 (114)
Q Consensus        15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL---~D~e~EVR~~a~~~l~~~~~~l~~~~i   91 (114)
                      .+++|++..+..|+.+-||+..|=-+...++.+-.+...+.+.|.+..|+   -|....|..||.+++..+-+.-|.+.+
T Consensus       433 peLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLV  512 (885)
T KOG2023|consen  433 PELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELV  512 (885)
T ss_pred             HHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhH
Confidence            36899999999999999999999999999988877777777777766665   599999999999999999988888654


Q ss_pred             hhhHhHHHHHHHHHH
Q psy13759         92 VSFKLGQVDRTSFLT  106 (114)
Q Consensus        92 ~~~iLP~i~~l~~~~  106 (114)
                       .++=+.+++|.|-.
T Consensus       513 -p~l~~IL~~l~~af  526 (885)
T KOG2023|consen  513 -PYLEYILDQLVFAF  526 (885)
T ss_pred             -HHHHHHHHHHHHHH
Confidence             45555666666643

>KOG1949|consensus

Probab=95.62  E-value=0.076  Score=47.20  Aligned_cols=93  Identities=22%  Similarity=0.125  Sum_probs=70.8

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhh---hh----HHHHHHhcCCCChHHHHHHHHhHHHH----Hhh
Q psy13759         17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVD---HL----LPLFLSQLKDECPEVRLNIISNLDCV----NEV   85 (114)
Q Consensus        17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~---~l----lP~~~~LL~D~e~EVR~~a~~~l~~~----~~~   85 (114)
                      .=|++-+.++-+|..||..+|..|-++=+..|++.+.+   .+    .-.+..||.|+.|.||..++..+.++    =..
T Consensus       175 ~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~  254 (1005)
T KOG1949|consen  175 YKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEM  254 (1005)
T ss_pred             HhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence            45777888899999999999999999999999887443   23    34678999999999999998877654    456


Q ss_pred             hChhhHhhhHhHHH-HHHHHHHHHHh
Q psy13759         86 IGIQQDVSFKLGQV-DRTSFLTAVLV  110 (114)
Q Consensus        86 l~~~~i~~~iLP~i-~~l~~~~~~~~  110 (114)
                      +++..+ ..++..+ ..++|-|.+=|
T Consensus       255 iP~~i~-~~ll~kI~d~~a~dt~s~V  279 (1005)
T KOG1949|consen  255 IPPTIL-IDLLKKITDELAFDTSSDV  279 (1005)
T ss_pred             cCHHHH-HHHHHHHHHHhhhccchhe
Confidence            677655 4455544 58888776533

>KOG1243|consensus

Probab=95.32  E-value=0.014  Score=51.05  Aligned_cols=85  Identities=16%  Similarity=0.130  Sum_probs=74.1

Q ss_pred             hccCChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759          5 LTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE   84 (114)
Q Consensus         5 ~~~~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~   84 (114)
                      ..+++++...+.|.|.+.....|+|.-+|.-....+..+++.+|+.....+++.+|..+=.|+..+.|.+-.-=+.+++.
T Consensus       358 i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~  437 (690)
T KOG1243|consen  358 IDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAP  437 (690)
T ss_pred             hhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccCcccccceeeeccccc
Confidence            45678999999999999999999999999999999999999999998888999999998888888888877777777776


Q ss_pred             hhChh
Q psy13759         85 VIGIQ   89 (114)
Q Consensus        85 ~l~~~   89 (114)
                      .+.+.
T Consensus       438 ~l~~~  442 (690)
T KOG1243|consen  438 HLAAS  442 (690)
T ss_pred             ccchh
Confidence            66544

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=95.21  E-value=0.25  Score=32.75  Aligned_cols=77  Identities=26%  Similarity=0.244  Sum_probs=58.8

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHccccccC-cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHhhhHhHH
Q psy13759         21 TQDLVADPNQHVKSALASVIMGLSPILG-KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVSFKLGQ   98 (114)
Q Consensus        21 l~~L~~D~s~~VR~~~a~~l~~la~~lg-~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~~~iLP~   98 (114)
                      .-..++|+..-||.-.-..+.++.+.-. .......++.+|.+.++|+++=|=.+|++.+..++...+.+ +...++-.
T Consensus         8 al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~-vl~~L~~~   85 (92)
T PF10363_consen    8 ALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE-VLPILLDE   85 (92)
T ss_pred             HHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH-HHHHHHHH
Confidence            3445678888899877777777765554 44455689999999999999999999999999999998664 33444433

>KOG2032|consensus

Probab=95.21  E-value=0.13  Score=43.65  Aligned_cols=91  Identities=14%  Similarity=0.099  Sum_probs=73.7

Q ss_pred             HHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhh---hhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhCh
Q psy13759         12 NFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTV---DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGI   88 (114)
Q Consensus        12 ~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~---~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~   88 (114)
                      .....++-.+.+-+.|++..+|.+++..++..+...+.+.-+   ..+.-++.+|+.|.+.||-..+++-+..+.+.+..
T Consensus       254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~  333 (533)
T KOG2032|consen  254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN  333 (533)
T ss_pred             ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh
Confidence            344556666677788999999999999999999875543322   35778899999999999999999999999999988


Q ss_pred             hhHhhhHhHHHHHH
Q psy13759         89 QQDVSFKLGQVDRT  102 (114)
Q Consensus        89 ~~i~~~iLP~i~~l  102 (114)
                      ..+...++|.-.++
T Consensus       334 ~~l~~~~l~ialrl  347 (533)
T KOG2032|consen  334 DDLESYLLNIALRL  347 (533)
T ss_pred             cchhhhchhHHHHH
Confidence            88888888776655

>KOG1060|consensus

Probab=95.12  E-value=0.058  Score=48.18  Aligned_cols=66  Identities=21%  Similarity=0.205  Sum_probs=55.8

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759         17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE   84 (114)
Q Consensus        17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~   84 (114)
                      ++=.+++++.|+|+.||..+|-+|.++= .++++.-. .++-++-.||.|..+-|--+|+.....+|+
T Consensus       144 ~llAIk~~~~D~s~yVRk~AA~AIpKLY-sLd~e~k~-qL~e~I~~LLaD~splVvgsAv~AF~evCP  209 (968)
T KOG1060|consen  144 MLLAIKKAVTDPSPYVRKTAAHAIPKLY-SLDPEQKD-QLEEVIKKLLADRSPLVVGSAVMAFEEVCP  209 (968)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHhhHHHh-cCChhhHH-HHHHHHHHHhcCCCCcchhHHHHHHHHhch
Confidence            4455688999999999999999999976 44544433 899999999999999999999999888875

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=95.03  E-value=0.19  Score=41.05  Aligned_cols=95  Identities=18%  Similarity=0.187  Sum_probs=76.3

Q ss_pred             CChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhh---hhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759          8 NSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVD---HLLPLFLSQLKDECPEVRLNIISNLDCVNE   84 (114)
Q Consensus         8 ~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~---~llP~~~~LL~D~e~EVR~~a~~~l~~~~~   84 (114)
                      +-++.+-+.++|.+-+..++.+...|...-..+..+-+.++++....   .++|.+++-|.=++++||.++++.+..+..
T Consensus       315 LykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~  394 (415)
T PF12460_consen  315 LYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILE  394 (415)
T ss_pred             HHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            34666778899999888888887788888888999999999888875   689999999988999999999999998887


Q ss_pred             hhChhhH---hhhHhHHHHHHH
Q psy13759         85 VIGIQQD---VSFKLGQVDRTS  103 (114)
Q Consensus        85 ~l~~~~i---~~~iLP~i~~l~  103 (114)
                      .- ++.+   .+.++|.+.+||
T Consensus       395 ~~-~~~i~~hl~sLI~~LL~ls  415 (415)
T PF12460_consen  395 EA-PELISEHLSSLIPRLLKLS  415 (415)
T ss_pred             cC-HHHHHHHHHHHHHHHHhcC
Confidence            66 4443   346666665553

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>smart00567 EZ_HEAT E-Z type HEAT repeats

Probab=95.02  E-value=0.039  Score=28.65  Aligned_cols=30  Identities=23%  Similarity=0.339  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCC
Q psy13759         30 QHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDE   67 (114)
Q Consensus        30 ~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~   67 (114)
                      |.||+.++..+++++        ...-+|.+.+.++|+
T Consensus         1 ~~vR~~aa~aLg~~~--------~~~a~~~L~~~l~d~   30 (30)
T smart00567        1 PLVRHEAAFALGQLG--------DEEAVPALIKALEDE   30 (30)
T ss_pred             CHHHHHHHHHHHHcC--------CHhHHHHHHHHhcCC
Confidence            789999999999884        234567888888874

Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.

>KOG0212|consensus

Probab=94.66  E-value=0.058  Score=46.63  Aligned_cols=87  Identities=11%  Similarity=0.138  Sum_probs=65.9

Q ss_pred             HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhh--hhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhh
Q psy13759         13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTV--DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ   90 (114)
Q Consensus        13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~--~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~   90 (114)
                      ....++|.+-...+|..-+|||.+|+.+-++|+..-.+...  +.+.-...++..|.++.||-++ +-++.+-+-+..+.
T Consensus        81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~  159 (675)
T KOG0212|consen   81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTES  159 (675)
T ss_pred             HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhcccc
Confidence            56778999999999999999999999999999776655443  5778888899999999999654 44555555443221


Q ss_pred             ----HhhhHhHHHH
Q psy13759         91 ----DVSFKLGQVD  100 (114)
Q Consensus        91 ----i~~~iLP~i~  100 (114)
                          -.+.++|.+.
T Consensus       160 ~~tFsL~~~ipLL~  173 (675)
T KOG0212|consen  160 ASTFSLPEFIPLLR  173 (675)
T ss_pred             ccccCHHHHHHHHH
Confidence                2566777775

>KOG0166|consensus

Probab=94.41  E-value=0.11  Score=44.29  Aligned_cols=72  Identities=17%  Similarity=0.212  Sum_probs=59.0

Q ss_pred             HHHhhHHHHHHhc-CCCCHHHHHHHHHHHHccccc---cCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759         13 FVSKSIKRTQDLV-ADPNQHVKSALASVIMGLSPI---LGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE   84 (114)
Q Consensus        13 ~~~~ilP~l~~L~-~D~s~~VR~~~a~~l~~la~~---lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~   84 (114)
                      +.+-++|.+-... .|.++.+|..+|-.+..||..   -.+......-+|+|+.|+..++.+||.-++-++.+++.
T Consensus       106 i~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIag  181 (514)
T KOG0166|consen  106 IQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAG  181 (514)
T ss_pred             HHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhcccc
Confidence            4455888886655 699999999999999999953   33444556789999999999999999999998887764

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=94.40  E-value=0.38  Score=36.53  Aligned_cols=70  Identities=16%  Similarity=0.045  Sum_probs=56.4

Q ss_pred             CCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhc-CCCChHHHHHHHHhHHHHHh--hhChhhHhhhHhH
Q psy13759         26 ADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQL-KDECPEVRLNIISNLDCVNE--VIGIQQDVSFKLG   97 (114)
Q Consensus        26 ~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL-~D~e~EVR~~a~~~l~~~~~--~l~~~~i~~~iLP   97 (114)
                      .|.+|++.++.|..+.++|...+.  ....+++.+.+.| +++.+.++..+++.+..+|+  +++.-..-..+.|
T Consensus        94 ~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~  166 (234)
T PF12530_consen   94 KDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQK  166 (234)
T ss_pred             CcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence            477999999999999999999888  5568999999999 78899999999999999984  3443333333333

>KOG1851|consensus

Probab=94.28  E-value=0.24  Score=47.00  Aligned_cols=92  Identities=16%  Similarity=0.085  Sum_probs=64.5

Q ss_pred             hHHHHhhHHHHHH-hcCCCCHHHHHHHHHHHHcc--ccccC-cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhh
Q psy13759         11 GNFVSKSIKRTQD-LVADPNQHVKSALASVIMGL--SPILG-KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVI   86 (114)
Q Consensus        11 ~~~~~~ilP~l~~-L~~D~s~~VR~~~a~~l~~l--a~~lg-~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l   86 (114)
                      .....+++-.+++ .+.+.+|+||+++-.-+.-.  .+.++ .+..++++--...+++.|.+-+||..|+.-+.++-..=
T Consensus      1521 ~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s 1600 (1710)
T KOG1851|consen 1521 HHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGS 1600 (1710)
T ss_pred             hhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcc
Confidence            3345556666664 45567999999966654433  36667 67778899999999999999999999999999887655


Q ss_pred             ChhhHhhhHhHHHHHH
Q psy13759         87 GIQQDVSFKLGQVDRT  102 (114)
Q Consensus        87 ~~~~i~~~iLP~i~~l  102 (114)
                      ..+...++.-+....+
T Consensus      1601 ~~~~~~~k~d~~~~~~ 1616 (1710)
T KOG1851|consen 1601 KFQFVSDKRDTTSNIL 1616 (1710)
T ss_pred             ccccchHhhhhhhhhh
Confidence            4433333344444333

>KOG1061|consensus

Probab=94.11  E-value=0.21  Score=44.11  Aligned_cols=77  Identities=17%  Similarity=0.102  Sum_probs=63.9

Q ss_pred             hhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhh
Q psy13759         10 DGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVI   86 (114)
Q Consensus        10 ~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l   86 (114)
                      -+.+...+.-.+.++.+|.++.||..+|.....+-..=+.-.....+++.+-.++.|+.|.|-.+|+.++..+.+.=
T Consensus       115 v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~  191 (734)
T KOG1061|consen  115 VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESH  191 (734)
T ss_pred             ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence            44556667778888999999999999999888877554444555689999999999999999999999999988754

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=93.84  E-value=0.5  Score=36.86  Aligned_cols=87  Identities=16%  Similarity=0.159  Sum_probs=63.3

Q ss_pred             ChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcch-----------hhhhhHHHHHHhcCCCChHHHHHHHH
Q psy13759          9 SDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHN-----------TVDHLLPLFLSQLKDECPEVRLNIIS   77 (114)
Q Consensus         9 ~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~-----------~~~~llP~~~~LL~D~e~EVR~~a~~   77 (114)
                      ++ ....+.++.+...++.....||..+...+.++.-..|.+.           ....++..|.+.++++++++|..+++
T Consensus        58 d~-~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~E  136 (298)
T PF12719_consen   58 DK-ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVE  136 (298)
T ss_pred             Ch-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHH
Confidence            44 3445556666555555599999999999999887777332           23468999999999999999999999


Q ss_pred             hHHH--HHhhhCh-hhHhhhHh
Q psy13759         78 NLDC--VNEVIGI-QQDVSFKL   96 (114)
Q Consensus        78 ~l~~--~~~~l~~-~~i~~~iL   96 (114)
                      .+.+  ++..+.. ..+.+.++
T Consensus       137 Gl~KLlL~~~i~~~~~vL~~Ll  158 (298)
T PF12719_consen  137 GLCKLLLSGRISDPPKVLSRLL  158 (298)
T ss_pred             HHHHHHhcCCCCcHHHHHHHHH
Confidence            9998  4555555 44434443

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=93.55  E-value=0.74  Score=35.73  Aligned_cols=83  Identities=17%  Similarity=0.131  Sum_probs=60.4

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHccccc-cCcchhhh-hhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHhhhHh
Q psy13759         19 KRTQDLVADPNQHVKSALASVIMGLSPI-LGKHNTVD-HLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVSFKL   96 (114)
Q Consensus        19 P~l~~L~~D~s~~VR~~~a~~l~~la~~-lg~e~~~~-~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~~~iL   96 (114)
                      +++..|-....+.++..+...++..+.. +.++...+ ..+|.+.++++|+.+.||..|+..+..++....-...++.-+
T Consensus        16 ~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i   95 (254)
T PF04826_consen   16 KLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYI   95 (254)
T ss_pred             HHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHH
Confidence            3444445556788888888888887743 33444444 689999999999999999999999999988775554445555


Q ss_pred             HHHHH
Q psy13759         97 GQVDR  101 (114)
Q Consensus        97 P~i~~  101 (114)
                      |.+.+
T Consensus        96 ~~Vc~  100 (254)
T PF04826_consen   96 PQVCE  100 (254)
T ss_pred             HHHHH
Confidence            66554

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=92.95  E-value=0.57  Score=41.48  Aligned_cols=83  Identities=19%  Similarity=0.270  Sum_probs=72.8

Q ss_pred             HHhhHHHHHHhcCCCCHHHHHHHHHHHHccc---cccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhh
Q psy13759         14 VSKSIKRTQDLVADPNQHVKSALASVIMGLS---PILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ   90 (114)
Q Consensus        14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la---~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~   90 (114)
                      .-.+.|.+.....|..+--|..++..+..++   +..|.+...-+++.++.-=.=|+.|+|-.++-+.++.|+.++|+..
T Consensus       839 vy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~  918 (975)
T COG5181         839 VYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSGA  918 (975)
T ss_pred             HHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccHH
Confidence            3458999999999999999999999887765   7788888888888888888889999999999999999999999987


Q ss_pred             HhhhHh
Q psy13759         91 DVSFKL   96 (114)
Q Consensus        91 i~~~iL   96 (114)
                      +.+++-
T Consensus       919 ~m~Yv~  924 (975)
T COG5181         919 MMKYVQ  924 (975)
T ss_pred             HHHHHH
Confidence            766653

>TIGR02270 conserved hypothetical protein

Probab=92.95  E-value=0.43  Score=39.48  Aligned_cols=25  Identities=0%  Similarity=0.056  Sum_probs=13.3

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHc
Q psy13759         18 IKRTQDLVADPNQHVKSALASVIMG   42 (114)
Q Consensus        18 lP~l~~L~~D~s~~VR~~~a~~l~~   42 (114)
                      +..+...+.|.+..||.++++.++.
T Consensus        88 ~~~L~~~L~d~~~~vr~aaa~ALg~  112 (410)
T TIGR02270        88 LRSVLAVLQAGPEGLCAGIQAALGW  112 (410)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhc
Confidence            3344445555555556555555554

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes

Probab=92.59  E-value=0.71  Score=33.58  Aligned_cols=74  Identities=18%  Similarity=0.172  Sum_probs=54.8

Q ss_pred             HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHhh
Q psy13759         15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVS   93 (114)
Q Consensus        15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~~   93 (114)
                      ....|.+...++|.+.-+|.+....+......    ...+.++..+..+++|++..||.++.-.|..++.. .++.+.+
T Consensus       119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~-~~~~v~~  192 (213)
T PF08713_consen  119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK-DPDEVLE  192 (213)
T ss_dssp             GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT--HHHHHH
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh-CHHHHHH
Confidence            45778888888888877777776655544433    44568899999999999999999999999999887 4444433

The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion

Probab=92.58  E-value=0.2  Score=28.44  Aligned_cols=24  Identities=21%  Similarity=0.419  Sum_probs=14.4

Q ss_pred             hhhHHHHHHhcCCCChHHHHHHHH
Q psy13759         54 DHLLPLFLSQLKDECPEVRLNIIS   77 (114)
Q Consensus        54 ~~llP~~~~LL~D~e~EVR~~a~~   77 (114)
                      ..+...+.+-+.|+++.||.++++
T Consensus        17 ~~v~~~i~~rl~D~s~~VR~aav~   40 (42)
T PF12765_consen   17 SDVQSAIIRRLSDSSPSVREAAVD   40 (42)
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHH
Confidence            355566666666666666666554

>KOG0915|consensus

Probab=92.53  E-value=0.64  Score=44.24  Aligned_cols=91  Identities=10%  Similarity=0.055  Sum_probs=65.0

Q ss_pred             hHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHH---HHhcCCCChHHHHHHHHhHHHHHhhh-
Q psy13759         11 GNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLF---LSQLKDECPEVRLNIISNLDCVNEVI-   86 (114)
Q Consensus        11 ~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~---~~LL~D~e~EVR~~a~~~l~~~~~~l-   86 (114)
                      ++..++|+--+-.-+.++.||||.+.|-++.++-+--+.+...+++..+.   ..-+.|=---||.++-+....+++.+ 
T Consensus      1034 d~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~v 1113 (1702)
T KOG0915|consen 1034 DEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCV 1113 (1702)
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45667777777778889999999999999999988777777776655444   44556656678888765555444432 


Q ss_pred             --C-------hhhHhhhHhHHHHH
Q psy13759         87 --G-------IQQDVSFKLGQVDR  101 (114)
Q Consensus        87 --~-------~~~i~~~iLP~i~~  101 (114)
                        +       ...+...+||++-.
T Consensus      1114 r~~d~~~~~~~~~~l~~iLPfLl~ 1137 (1702)
T KOG0915|consen 1114 RICDVTNGAKGKEALDIILPFLLD 1137 (1702)
T ss_pred             hhcccCCcccHHHHHHHHHHHHhc
Confidence              2       23477889998753

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=92.48  E-value=0.35  Score=40.77  Aligned_cols=65  Identities=18%  Similarity=0.182  Sum_probs=44.5

Q ss_pred             HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHH
Q psy13759         14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV   82 (114)
Q Consensus        14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~   82 (114)
                      ...+.|.+. -..+.+.++|.++...|..++... ++.+.+.++|+|.  =.++.+|||.+|...+-..
T Consensus       479 i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~-p~~v~~~l~~i~~--n~~e~~EvRiaA~~~lm~t  543 (574)
T smart00638      479 IKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRD-PRKVQEVLLPIYL--NRAEPPEVRMAAVLVLMET  543 (574)
T ss_pred             HHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHc--CCCCChHHHHHHHHHHHhc
Confidence            344555554 234567899999999999887543 4445566677762  2346889999998877654

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=92.46  E-value=0.6  Score=41.62  Aligned_cols=66  Identities=14%  Similarity=0.145  Sum_probs=54.5

Q ss_pred             HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759         14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN   83 (114)
Q Consensus        14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~   83 (114)
                      .-..++.+++-++|+|+.+|.++=..+..+    +.......+++.+.++++|+.+.||..|+-.+-++=
T Consensus        90 ~lLavNti~kDl~d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly  155 (757)
T COG5096          90 ALLAVNTIQKDLQDPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLY  155 (757)
T ss_pred             HHHHHHHHHhhccCCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH
Confidence            334788889999999999999988877664    344555678999999999999999999998887654

>KOG1241|consensus

Probab=92.45  E-value=0.58  Score=41.82  Aligned_cols=97  Identities=14%  Similarity=0.118  Sum_probs=73.8

Q ss_pred             HHhhHHHHHHhc-C------CCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhh
Q psy13759         14 VSKSIKRTQDLV-A------DPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVI   86 (114)
Q Consensus        14 ~~~ilP~l~~L~-~------D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l   86 (114)
                      ..+++|.+-+++ +      |..|.+-.+++..++=+|+..|.++.. +++|.+.+=++-++++=|-+++-.+..+-+.-
T Consensus       317 ~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp  395 (859)
T KOG1241|consen  317 LQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGP  395 (859)
T ss_pred             HhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCC
Confidence            446888886544 3      567999999999999999999998876 99999999999999999999998777665544


Q ss_pred             Chhh---HhhhHhHHHHHHHHHHHHHhh
Q psy13759         87 GIQQ---DVSFKLGQVDRTSFLTAVLVK  111 (114)
Q Consensus        87 ~~~~---i~~~iLP~i~~l~~~~~~~~~  111 (114)
                      .++.   ++..-+|.+.++-.-..+.||
T Consensus       396 ~~~~Lt~iV~qalp~ii~lm~D~sl~Vk  423 (859)
T KOG1241|consen  396 EPDKLTPIVIQALPSIINLMSDPSLWVK  423 (859)
T ss_pred             chhhhhHHHhhhhHHHHHHhcCchhhhc
Confidence            4443   455666666655544445554

>KOG4224|consensus

Probab=92.42  E-value=0.11  Score=43.39  Aligned_cols=77  Identities=21%  Similarity=0.186  Sum_probs=62.4

Q ss_pred             hHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccc-cccCcch-hhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759         11 GNFVSKSIKRTQDLVADPNQHVKSALASVIMGLS-PILGKHN-TVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG   87 (114)
Q Consensus        11 ~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la-~~lg~e~-~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~   87 (114)
                      ..+.+.-+|.+..|+-|.+-.||..+...|..++ .-..++. ....++|+++.+..|+..|||-+++..+.++++-+.
T Consensus       371 ~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~  449 (550)
T KOG4224|consen  371 VIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVE  449 (550)
T ss_pred             HHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhH
Confidence            3344557899999999999999999999988887 3333333 345799999999999999999999999988887654

>KOG1248|consensus

Probab=92.07  E-value=0.82  Score=42.37  Aligned_cols=87  Identities=20%  Similarity=0.127  Sum_probs=77.0

Q ss_pred             hhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhh---hhHHHHHHhcCCCChHHHHHHHHhHHHHHhhh
Q psy13759         10 DGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVD---HLLPLFLSQLKDECPEVRLNIISNLDCVNEVI   86 (114)
Q Consensus        10 ~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~---~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l   86 (114)
                      .+.....++..+...+.-.+.++|.++-..+.-++..++.+....   .|+|-++.+++|...++|..+-.=+..++...
T Consensus       821 d~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkf  900 (1176)
T KOG1248|consen  821 DDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKF  900 (1176)
T ss_pred             cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence            445667788889999999999999999999999999999888775   48999999999999999999999999999999


Q ss_pred             ChhhHhhhHhH
Q psy13759         87 GIQQDVSFKLG   97 (114)
Q Consensus        87 ~~~~i~~~iLP   97 (114)
                      |.+.+ +.++|
T Consensus       901 g~~eL-e~~~p  910 (1176)
T KOG1248|consen  901 GAEEL-ESFLP  910 (1176)
T ss_pred             CHHHH-HhhCH
Confidence            99876 56667

>KOG0213|consensus

Probab=91.94  E-value=0.94  Score=40.91  Aligned_cols=83  Identities=19%  Similarity=0.264  Sum_probs=72.5

Q ss_pred             HHhhHHHHHHhcCCCCHHHHHHHHHHHHccc---cccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhh
Q psy13759         14 VSKSIKRTQDLVADPNQHVKSALASVIMGLS---PILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ   90 (114)
Q Consensus        14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la---~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~   90 (114)
                      .--+.|++.....|...--|..++..+..++   ..+|-+....+++.++--=.=|+.|+|-.+....+.++...+|+..
T Consensus      1034 iyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~~ 1113 (1172)
T KOG0213|consen 1034 IYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGPQA 1113 (1172)
T ss_pred             HHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhchHH
Confidence            3448999999999999999999999888776   6677788888888888888889999999999999999999999988


Q ss_pred             HhhhHh
Q psy13759         91 DVSFKL   96 (114)
Q Consensus        91 i~~~iL   96 (114)
                      +.++++
T Consensus      1114 ~~~Y~~ 1119 (1172)
T KOG0213|consen 1114 MLKYCL 1119 (1172)
T ss_pred             HHHHHH
Confidence            777665

>KOG1967|consensus

Probab=91.86  E-value=1.2  Score=40.67  Aligned_cols=108  Identities=17%  Similarity=0.111  Sum_probs=81.1

Q ss_pred             hccCChhHHHHh---hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchh--hhhhHHHHHHhcCCCC---hHHHHHHH
Q psy13759          5 LTINSDGNFVSK---SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNT--VDHLLPLFLSQLKDEC---PEVRLNII   76 (114)
Q Consensus         5 ~~~~~~~~~~~~---ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~--~~~llP~~~~LL~D~e---~EVR~~a~   76 (114)
                      .++.|.+.+..+   ++|.+-+..+=++..||-+.-+.|..+--..|.=.+  .+.++|.++.+-+|+.   .-||..|+
T Consensus       895 l~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~AL  974 (1030)
T KOG1967|consen  895 LTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDAL  974 (1030)
T ss_pred             HhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHH
Confidence            345666655444   899999999988999998888877765544443222  2579999999999987   67999999


Q ss_pred             HhHHHHHhhhCh-------hhHhhhHhHHH---HHHHHHHHHHhhc
Q psy13759         77 SNLDCVNEVIGI-------QQDVSFKLGQV---DRTSFLTAVLVKS  112 (114)
Q Consensus        77 ~~l~~~~~~l~~-------~~i~~~iLP~i---~~l~~~~~~~~~~  112 (114)
                      +-+..+...++.       +.+.+.|+|.+   +++..--|+=.+.
T Consensus       975 qcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen  975 QCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred             HHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence            999999987763       35778888887   5777777765543

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=91.64  E-value=1.6  Score=32.65  Aligned_cols=90  Identities=13%  Similarity=0.051  Sum_probs=67.6

Q ss_pred             hHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhh---hhhHHHHHHhcCCCChHHHHHHHHhHHHH---Hh
Q psy13759         11 GNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTV---DHLLPLFLSQLKDECPEVRLNIISNLDCV---NE   84 (114)
Q Consensus        11 ~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~---~~llP~~~~LL~D~e~EVR~~a~~~l~~~---~~   84 (114)
                      ..-..+.||.+-.-+.....--|.-+..-+.++-+.-|.+...   -.+++.+-+-|+-.+++|..++++.+..+   ++
T Consensus        33 ~Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~  112 (183)
T PF10274_consen   33 KLDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSD  112 (183)
T ss_pred             hcchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence            3345579999999888888888888888888888774444433   35666777788889999999999999999   88


Q ss_pred             hhChhhH--hhhHhHHHH
Q psy13759         85 VIGIQQD--VSFKLGQVD  100 (114)
Q Consensus        85 ~l~~~~i--~~~iLP~i~  100 (114)
                      .+|++..  -.+|||.+.
T Consensus       113 ~vG~aLvPyyrqLLp~ln  130 (183)
T PF10274_consen  113 MVGEALVPYYRQLLPVLN  130 (183)
T ss_pred             hhhHHHHHHHHHHHHHHH
Confidence            8887632  344444443

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>KOG4224|consensus

Probab=91.61  E-value=0.33  Score=40.59  Aligned_cols=70  Identities=13%  Similarity=0.134  Sum_probs=57.6

Q ss_pred             HhhHHHHHHhcCCCCHHHHHHHHHHHHccc--cccCcchhhh--hhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759         15 SKSIKRTQDLVADPNQHVKSALASVIMGLS--PILGKHNTVD--HLLPLFLSQLKDECPEVRLNIISNLDCVNE   84 (114)
Q Consensus        15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la--~~lg~e~~~~--~llP~~~~LL~D~e~EVR~~a~~~l~~~~~   84 (114)
                      .-.+|.+-.+++-.+..|||.++..+..|+  +.--+-....  .++|-++.|+.|.++-|+..|...+..++.
T Consensus       207 aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas  280 (550)
T KOG4224|consen  207 AGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLAS  280 (550)
T ss_pred             cCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcc
Confidence            336899999999999999999999999988  2222333334  399999999999999999999988887765

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=91.55  E-value=1.4  Score=32.32  Aligned_cols=73  Identities=18%  Similarity=0.219  Sum_probs=57.2

Q ss_pred             HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759         13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG   87 (114)
Q Consensus        13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~   87 (114)
                      +.+.-++.+-+++.+++..||..+.+.+.-+-+ .|=-. ..+.+|.++.|..|+++.+|..|..-+..+.+--+
T Consensus         5 l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~-qGLvn-P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~   77 (187)
T PF12830_consen    5 LVQRYLKNILELCLSSDDSVRLAALQVLELILR-QGLVN-PKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE   77 (187)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-cCCCC-hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence            456677888889999999999999887776552 33211 23578999999999999999999988887766553

>cd06561 AlkD_like A new structural DNA glycosylase

Probab=91.29  E-value=1.8  Score=30.97  Aligned_cols=69  Identities=17%  Similarity=0.120  Sum_probs=51.5

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhH
Q psy13759         19 KRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQD   91 (114)
Q Consensus        19 P~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i   91 (114)
                      +.+.....|.+.-+|.+....+......   +...+.++.++..++.|++.-||.++...|..++.. .++.+
T Consensus       108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~-~~~~v  176 (197)
T cd06561         108 DLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK-DPERV  176 (197)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh-CHHHH
Confidence            6677767766666666555555443322   445678999999999999999999999999999988 45443

This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=91.12  E-value=0.86  Score=44.70  Aligned_cols=88  Identities=10%  Similarity=0.144  Sum_probs=69.2

Q ss_pred             HhhHHHHHHhcCCCCHHHHHHHHHHHHcccccc---CcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhh-
Q psy13759         15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPIL---GKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ-   90 (114)
Q Consensus        15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~l---g~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~-   90 (114)
                      +..+|.+-.|.+..+.++|..++..+..++..-   .........+|.++.+|+..+.+||..++..|..+......++ 
T Consensus       608 ~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~  687 (2102)
T PLN03200        608 NDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRK  687 (2102)
T ss_pred             cccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHH
Confidence            348999999999999999999999999998522   2334556889999999999999999999999999997655543 


Q ss_pred             ---HhhhHhHHHHHH
Q psy13759         91 ---DVSFKLGQVDRT  102 (114)
Q Consensus        91 ---i~~~iLP~i~~l  102 (114)
                         +....+|.+.++
T Consensus       688 ~~~v~~GaV~pL~~L  702 (2102)
T PLN03200        688 VSYAAEDAIKPLIKL  702 (2102)
T ss_pred             HHHHHcCCHHHHHHH
Confidence               223355555444

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=91.01  E-value=1.3  Score=43.47  Aligned_cols=76  Identities=12%  Similarity=0.103  Sum_probs=65.2

Q ss_pred             HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccC-c-chhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhh
Q psy13759         15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILG-K-HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ   90 (114)
Q Consensus        15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg-~-e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~   90 (114)
                      ...+|.+.+++++.+.+|+..++..+..++..-. . +......+|.++.+|++.++++|.+|+..+..+++.-..++
T Consensus       693 ~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~  770 (2102)
T PLN03200        693 EDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDD  770 (2102)
T ss_pred             cCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhH
Confidence            3488999999999999999999999999985542 2 33446789999999999999999999999999998877665

>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT

Probab=90.84  E-value=0.23  Score=25.42  Aligned_cols=27  Identities=22%  Similarity=0.406  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHccccccCcchhhhhhHHHHHHhcCC
Q psy13759         32 VKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKD   66 (114)
Q Consensus        32 VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D   66 (114)
                      ||++++..++++..        ..-+|.+.+.|+|
T Consensus         1 VR~~Aa~aLg~igd--------~~ai~~L~~~L~d   27 (27)
T PF03130_consen    1 VRRAAARALGQIGD--------PRAIPALIEALED   27 (27)
T ss_dssp             HHHHHHHHHGGG-S--------HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCC--------HHHHHHHHHHhcC
Confidence            78999998888874        4556777766655

Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.

>KOG2062|consensus

Probab=90.55  E-value=0.46  Score=42.50  Aligned_cols=70  Identities=20%  Similarity=0.165  Sum_probs=44.6

Q ss_pred             hcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCC-ChHHHHHHHHhHHHHHhhhChhhHhhhHhHHH
Q psy13759         24 LVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDE-CPEVRLNIISNLDCVNEVIGIQQDVSFKLGQV   99 (114)
Q Consensus        24 L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~-e~EVR~~a~~~l~~~~~~l~~~~i~~~iLP~i   99 (114)
                      ..+|.+..||+++...++-++-.-      -+.+|-+++||.++ +|+||..++-.+.-.|.--|...-++-+=|..
T Consensus       563 aVsD~nDDVrRaAVialGFVl~~d------p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~  633 (929)
T KOG2062|consen  563 AVSDVNDDVRRAAVIALGFVLFRD------PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLT  633 (929)
T ss_pred             cccccchHHHHHHHHHheeeEecC------hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhh
Confidence            456777777777777776665211      14557777777775 77777777777777776666554444444444

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=90.49  E-value=0.53  Score=25.05  Aligned_cols=29  Identities=28%  Similarity=0.215  Sum_probs=20.7

Q ss_pred             hhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759         55 HLLPLFLSQLKDECPEVRLNIISNLDCVN   83 (114)
Q Consensus        55 ~llP~~~~LL~D~e~EVR~~a~~~l~~~~   83 (114)
                      ..+|.+++|++.++++++..++..+..++
T Consensus        12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185       12 GGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            36777777777777777777777776654

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=90.43  E-value=0.7  Score=25.32  Aligned_cols=32  Identities=19%  Similarity=0.241  Sum_probs=28.3

Q ss_pred             HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccc
Q psy13759         13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLS   44 (114)
Q Consensus        13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la   44 (114)
                      +....+|.+..++++.+..||..++..+..|+
T Consensus         9 ~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    9 VEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             HHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             HHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            34458999999999999999999999998876

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG1949|consensus

Probab=90.26  E-value=0.47  Score=42.38  Aligned_cols=73  Identities=18%  Similarity=0.247  Sum_probs=59.3

Q ss_pred             hhHHHHhhHHHH-HHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHH
Q psy13759         10 DGNFVSKSIKRT-QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV   82 (114)
Q Consensus        10 ~~~~~~~ilP~l-~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~   82 (114)
                      |..+..+++.-+ ..++.|++-.||.++-+-+..++-.=..+..-+.++|.+--+|.|+..-||.|+..-+..+
T Consensus       256 P~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i  329 (1005)
T KOG1949|consen  256 PPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI  329 (1005)
T ss_pred             CHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence            444555555555 5799999999999999999998865556677789999999999999999999998766543

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=90.17  E-value=1.1  Score=31.25  Aligned_cols=67  Identities=12%  Similarity=0.097  Sum_probs=46.1

Q ss_pred             hHHHHHHhc-CCCCHHHHHHHHHHHHccccccC--cchhhh-hhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759         17 SIKRTQDLV-ADPNQHVKSALASVIMGLSPILG--KHNTVD-HLLPLFLSQLKDECPEVRLNIISNLDCVN   83 (114)
Q Consensus        17 ilP~l~~L~-~D~s~~VR~~~a~~l~~la~~lg--~e~~~~-~llP~~~~LL~D~e~EVR~~a~~~l~~~~   83 (114)
                      ++-.+..++ ......+-.-+|..++++++..+  +....+ ..-..+.+|+.++++|||..|+..+.++.
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            444454444 33356666677888888886665  333332 56788999999999999999999887763

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=90.15  E-value=2  Score=37.91  Aligned_cols=90  Identities=14%  Similarity=0.043  Sum_probs=61.4

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChh------h
Q psy13759         17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ------Q   90 (114)
Q Consensus        17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~------~   90 (114)
                      +...++-|+..-++|||+..|-.++-.|.--|....    +-++-.|+.|..--||.+|+-...-+.-.-.++      .
T Consensus       587 lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a----~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~  662 (926)
T COG5116         587 LVGTVELLSESHNFHVRAGVAVALGIACAGTGDKVA----TDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKR  662 (926)
T ss_pred             hhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHHH----HHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHH
Confidence            445566677777999999999999988877776654    456677899999999999887776554333332      2


Q ss_pred             HhhhHhHHHH-----HHHHHHHHHh
Q psy13759         91 DVSFKLGQVD-----RTSFLTAVLV  110 (114)
Q Consensus        91 i~~~iLP~i~-----~l~~~~~~~~  110 (114)
                      |.+++.-.+.     .|+.+.|++-
T Consensus       663 I~k~f~~vI~~Khe~glaklGA~la  687 (926)
T COG5116         663 IIKKFNRVIVDKHESGLAKLGAVLA  687 (926)
T ss_pred             HHHHHHHHHhhhhHhHHHHHHHHHH
Confidence            4444444442     3566666653

>KOG0567|consensus

Probab=90.14  E-value=0.89  Score=36.11  Aligned_cols=55  Identities=20%  Similarity=0.204  Sum_probs=33.8

Q ss_pred             HHHHHHhcCCC--CHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHH
Q psy13759         18 IKRTQDLVADP--NQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLD   80 (114)
Q Consensus        18 lP~l~~L~~D~--s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~   80 (114)
                      +|.+..-+.|.  ++-||..+|+.++.+|        .+.-++.+.++++|+++-||..+.-.++
T Consensus       220 i~~L~k~L~d~~E~pMVRhEaAeALGaIa--------~e~~~~vL~e~~~D~~~vv~esc~vald  276 (289)
T KOG0567|consen  220 IPSLIKVLLDETEHPMVRHEAAEALGAIA--------DEDCVEVLKEYLGDEERVVRESCEVALD  276 (289)
T ss_pred             hHHHHHHHHhhhcchHHHHHHHHHHHhhc--------CHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            45555444443  5567777777766665        3445666777777777777766665554

>KOG0166|consensus

Probab=90.05  E-value=1.4  Score=37.76  Aligned_cols=92  Identities=13%  Similarity=0.024  Sum_probs=68.9

Q ss_pred             HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccC--cchhh-hhhHHHHHHhcCCCCh-HHHHHHHHhHHHHHhhhChh-
Q psy13759         15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILG--KHNTV-DHLLPLFLSQLKDECP-EVRLNIISNLDCVNEVIGIQ-   89 (114)
Q Consensus        15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg--~e~~~-~~llP~~~~LL~D~e~-EVR~~a~~~l~~~~~~l~~~-   89 (114)
                      ..-+|.+..|...++.+||.=++-.++++|..=+  .+.+. ...++.++.++..+.+ -...+++-.+.++|..-.|. 
T Consensus       151 agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P  230 (514)
T KOG0166|consen  151 AGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSP  230 (514)
T ss_pred             CCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCC
Confidence            3478999999999999999999999999883322  23333 3678888888888775 44556777888888877432 


Q ss_pred             --hHhhhHhHHHHHHHHHH
Q psy13759         90 --QDVSFKLGQVDRTSFLT  106 (114)
Q Consensus        90 --~i~~~iLP~i~~l~~~~  106 (114)
                        ..+..+||.+..|-.-+
T Consensus       231 ~~~~v~~iLp~L~~ll~~~  249 (514)
T KOG0166|consen  231 PFDVVAPILPALLRLLHST  249 (514)
T ss_pred             cHHHHHHHHHHHHHHHhcC
Confidence              45678888888776644

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=89.85  E-value=1.6  Score=32.52  Aligned_cols=87  Identities=14%  Similarity=0.168  Sum_probs=64.3

Q ss_pred             HHhhHHHHHHhcCCCCHHHHHHHHHHHHcc---ccccCcchhh--hhhHHHHHHhcCC-----------CChHHHHHHHH
Q psy13759         14 VSKSIKRTQDLVADPNQHVKSALASVIMGL---SPILGKHNTV--DHLLPLFLSQLKD-----------ECPEVRLNIIS   77 (114)
Q Consensus        14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~l---a~~lg~e~~~--~~llP~~~~LL~D-----------~e~EVR~~a~~   77 (114)
                      ..++++.+++.++-++.+|..++-..+-.+   ++.+|++...  ..++|.+--+.+.           ....++-.+..
T Consensus        78 lPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~e  157 (183)
T PF10274_consen   78 LPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQE  157 (183)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHH
Confidence            445667778889999999999999999999   7888866554  4666666533332           34677888888


Q ss_pred             hHHHHHhhhChhh--HhhhHhHHHH
Q psy13759         78 NLDCVNEVIGIQQ--DVSFKLGQVD  100 (114)
Q Consensus        78 ~l~~~~~~l~~~~--i~~~iLP~i~  100 (114)
                      .+..+-..-|++.  .+.+.+|+++
T Consensus       158 tL~~lE~~GG~dA~~nIKy~IPTYe  182 (183)
T PF10274_consen  158 TLELLERNGGPDAFINIKYMIPTYE  182 (183)
T ss_pred             HHHHHHHhcChhHHHHHHHhCCCCC
Confidence            8888888888885  3566677654

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>KOG2956|consensus

Probab=89.83  E-value=2.1  Score=36.42  Aligned_cols=85  Identities=11%  Similarity=0.142  Sum_probs=62.0

Q ss_pred             hhHHHHhhHHHHHHhcCCCCHHHHHHHH-HHHHccccccCcchhh---hhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759         10 DGNFVSKSIKRTQDLVADPNQHVKSALA-SVIMGLSPILGKHNTV---DHLLPLFLSQLKDECPEVRLNIISNLDCVNEV   85 (114)
Q Consensus        10 ~~~~~~~ilP~l~~L~~D~s~~VR~~~a-~~l~~la~~lg~e~~~---~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~   85 (114)
                      |......+.|++..  .|   .=|..++ .-+.++++.+.+|.-.   ..+.|.+++-.+-.+..||+.++.-|-.+.+.
T Consensus       404 P~~~I~~i~~~Ilt--~D---~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~  478 (516)
T KOG2956|consen  404 PLQCIVNISPLILT--AD---EPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNR  478 (516)
T ss_pred             chhHHHHHhhHHhc--Cc---chHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence            33344556666655  22   2233333 3677788888887666   47899999999999999999999999999999


Q ss_pred             hChhhHhhhHhHHHHHHH
Q psy13759         86 IGIQQDVSFKLGQVDRTS  103 (114)
Q Consensus        86 l~~~~i~~~iLP~i~~l~  103 (114)
                      +|.+.+    .|++.+|.
T Consensus       479 vG~~~m----ePhL~~Lt  492 (516)
T KOG2956|consen  479 VGMEEM----EPHLEQLT  492 (516)
T ss_pred             HhHHhh----hhHhhhcc
Confidence            997654    46666554

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=89.83  E-value=1.1  Score=37.71  Aligned_cols=67  Identities=18%  Similarity=0.275  Sum_probs=54.9

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHccccccC---cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759         18 IKRTQDLVADPNQHVKSALASVIMGLSPILG---KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE   84 (114)
Q Consensus        18 lP~l~~L~~D~s~~VR~~~a~~l~~la~~lg---~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~   84 (114)
                      ++.+..+....+..||.-+-+.+.+++..=.   .....+.+++.+++.++|++.=||.++++-+..++.
T Consensus       162 ~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~  231 (503)
T PF10508_consen  162 LSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE  231 (503)
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc
Confidence            7888888888788899888888888873322   233334699999999999999999999999999988

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG1062|consensus

Probab=89.77  E-value=1.1  Score=40.17  Aligned_cols=79  Identities=13%  Similarity=0.110  Sum_probs=63.5

Q ss_pred             hhccCChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759          4 LLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN   83 (114)
Q Consensus         4 l~~~~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~   83 (114)
                      ||..+++|- ...+.|.+.++++.+++.||.-++-+...+-...+.  ..+.++|-+.++|.|..+.|=.+.+.=+-.+|
T Consensus       131 lg~i~s~Em-ardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~--l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c  207 (866)
T KOG1062|consen  131 LGNICSPEM-ARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD--LVEHFVIAFRKLLCEKHHGVLIAGLHLITELC  207 (866)
T ss_pred             hhccCCHHH-hHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch--HHHHhhHHHHHHHhhcCCceeeeHHHHHHHHH
Confidence            455566654 677999999999999999999888877776554443  34689999999999999999888887777777


Q ss_pred             hh
Q psy13759         84 EV   85 (114)
Q Consensus        84 ~~   85 (114)
                      +.
T Consensus       208 ~~  209 (866)
T KOG1062|consen  208 KI  209 (866)
T ss_pred             hc
Confidence            76

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=89.74  E-value=2.4  Score=32.88  Aligned_cols=67  Identities=19%  Similarity=0.246  Sum_probs=51.0

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHh-cCC-CChHHHHHHHHhHHHHH
Q psy13759         17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQ-LKD-ECPEVRLNIISNLDCVN   83 (114)
Q Consensus        17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~L-L~D-~e~EVR~~a~~~l~~~~   83 (114)
                      .+|.+..+..|++++||..+...+..++.........+..++...+. ..+ -+.+|..+.++-|..+.
T Consensus        55 gi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLt  123 (254)
T PF04826_consen   55 GISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLT  123 (254)
T ss_pred             CHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccC
Confidence            89999999999999999999999999987665444444445555543 333 37789888888888775

>KOG2259|consensus

Probab=89.63  E-value=1.1  Score=39.68  Aligned_cols=70  Identities=14%  Similarity=0.138  Sum_probs=57.2

Q ss_pred             HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhh
Q psy13759         14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVI   86 (114)
Q Consensus        14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l   86 (114)
                      ..+....+..+..|...+||..+++.+..+.+  |-.. ...+-..-.++++|.+-+||++|++-+.-.++..
T Consensus       196 ~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e--g~kL-~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~  265 (823)
T KOG2259|consen  196 REHAARGLIYLEHDQDFRVRTHAVEGLLALSE--GFKL-SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRC  265 (823)
T ss_pred             HHHHHHHHHHHhcCCCcchHHHHHHHHHhhcc--cccc-cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcC
Confidence            33455558889999999999999999999998  4332 2346677889999999999999999888888877

>KOG2259|consensus

Probab=89.42  E-value=0.81  Score=40.54  Aligned_cols=78  Identities=18%  Similarity=0.184  Sum_probs=58.7

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChh-hHhhhHhHH
Q psy13759         20 RTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ-QDVSFKLGQ   98 (114)
Q Consensus        20 ~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~-~i~~~iLP~   98 (114)
                      .+-.-+.|.-..||.++...++.++..-+.  +-..-+-.++.+++|+..+||.-++..+..++..+... ...+.++-.
T Consensus       377 A~VhGlEDEf~EVR~AAV~Sl~~La~ssP~--FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~  454 (823)
T KOG2259|consen  377 ALVHGLEDEFYEVRRAAVASLCSLATSSPG--FAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILES  454 (823)
T ss_pred             eeeeechHHHHHHHHHHHHHHHHHHcCCCC--cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHH
Confidence            344567899999999999999999853332  23456788999999999999999999999999986432 223444444


Q ss_pred             H
Q psy13759         99 V   99 (114)
Q Consensus        99 i   99 (114)
                      +
T Consensus       455 L  455 (823)
T KOG2259|consen  455 L  455 (823)
T ss_pred             H
Confidence            4

>KOG2062|consensus

Probab=89.10  E-value=0.89  Score=40.74  Aligned_cols=63  Identities=17%  Similarity=0.074  Sum_probs=49.9

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759         17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN   83 (114)
Q Consensus        17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~   83 (114)
                      ....+.-|+..-|+||||.+|-.++-.|.--|....    +.++.-|.+|..--||..|+-.+.-+-
T Consensus       590 ~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eA----i~lLepl~~D~~~fVRQgAlIa~amIm  652 (929)
T KOG2062|consen  590 LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEA----INLLEPLTSDPVDFVRQGALIALAMIM  652 (929)
T ss_pred             chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHH----HHHHhhhhcChHHHHHHHHHHHHHHHH
Confidence            334556677788999999999999999988886554    456666788999999999987776554

>PF14868 DUF4487: Domain of unknown function (DUF4487)

Probab=88.56  E-value=1.8  Score=37.39  Aligned_cols=79  Identities=16%  Similarity=0.203  Sum_probs=62.1

Q ss_pred             ChhHHHHhhHHHHHHhc-CCCCHHHHHHHHHHHHccccccCcchhhhhh----HHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759          9 SDGNFVSKSIKRTQDLV-ADPNQHVKSALASVIMGLSPILGKHNTVDHL----LPLFLSQLKDECPEVRLNIISNLDCVN   83 (114)
Q Consensus         9 ~~~~~~~~ilP~l~~L~-~D~s~~VR~~~a~~l~~la~~lg~e~~~~~l----lP~~~~LL~D~e~EVR~~a~~~l~~~~   83 (114)
                      .++. ..+++-.+..+. ..+..+||-++++.+..+++.+-++...+.+    --+|-.||.|..|=|+..|+++...||
T Consensus       473 ~~~~-i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FA  551 (559)
T PF14868_consen  473 DPQL-IEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFA  551 (559)
T ss_pred             ChHH-HHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHh
Confidence            4444 344555555555 6788889999999999999888877776554    456788999999999999999999999


Q ss_pred             hhhCh
Q psy13759         84 EVIGI   88 (114)
Q Consensus        84 ~~l~~   88 (114)
                      +.-.-
T Consensus       552 e~T~~  556 (559)
T PF14868_consen  552 ERTSH  556 (559)
T ss_pred             ccCCc
Confidence            86543

>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats

Probab=88.10  E-value=2.5  Score=31.59  Aligned_cols=83  Identities=16%  Similarity=0.057  Sum_probs=58.5

Q ss_pred             HHHHHHhcCCC-CHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHhhhHh
Q psy13759         18 IKRTQDLVADP-NQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVSFKL   96 (114)
Q Consensus        18 lP~l~~L~~D~-s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~~~iL   96 (114)
                      .+.+...+.|. -|..|.++...+. ..+    +.-.+.+..++..++.|++.-||+++.=.|-.+++. .++.+...|-
T Consensus       117 ~~~l~~W~~s~~~W~rR~ai~~~l~-~~~----~~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~-d~~~V~~fl~  190 (208)
T cd07064         117 EPVMDEWSTDENFWLRRTAILHQLK-YKE----KTDTDLLFEIILANLGSKEFFIRKAIGWALREYSKT-NPDWVRDFVA  190 (208)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHH-HHH----ccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcc-CHHHHHHHHH
Confidence            45566655544 5677777665443 222    222357788999999999999999999999999998 7777767776


Q ss_pred             HHHHHHHHHH
Q psy13759         97 GQVDRTSFLT  106 (114)
Q Consensus        97 P~i~~l~~~~  106 (114)
                      ....+++.++
T Consensus       191 ~~~~~m~~~s  200 (208)
T cd07064         191 AHKLRLSPLS  200 (208)
T ss_pred             HhhhhcChhH
Confidence            6665555554

This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa

>KOG1824|consensus

Probab=88.03  E-value=1.9  Score=39.78  Aligned_cols=84  Identities=14%  Similarity=0.048  Sum_probs=56.6

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHccc--cccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhCh--hhHh
Q psy13759         17 SIKRTQDLVADPNQHVKSALASVIMGLS--PILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGI--QQDV   92 (114)
Q Consensus        17 ilP~l~~L~~D~s~~VR~~~a~~l~~la--~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~--~~i~   92 (114)
                      ++|-++....-.+...|..+...+.-.-  +.-+-+......+.-|+.+++|++.+||..++..+..+++.=+.  ..+.
T Consensus       967 LlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDll 1046 (1233)
T KOG1824|consen  967 LLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLL 1046 (1233)
T ss_pred             HHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHH
Confidence            6777777777777777776666544322  11112334445667899999999999999999999888876442  1345


Q ss_pred             hhHhHHHH
Q psy13759         93 SFKLGQVD  100 (114)
Q Consensus        93 ~~iLP~i~  100 (114)
                      ..+||.+-
T Consensus      1047 peLLp~Ly 1054 (1233)
T KOG1824|consen 1047 PELLPLLY 1054 (1233)
T ss_pred             HHHHHHHH
Confidence            66666653

>KOG1061|consensus

Probab=87.99  E-value=1.6  Score=38.82  Aligned_cols=84  Identities=15%  Similarity=0.077  Sum_probs=62.2

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHhhhHh
Q psy13759         17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVSFKL   96 (114)
Q Consensus        17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~~~iL   96 (114)
                      -++.+..-+.|++|-+|..+-.-.+.    ++.+...+.+.-.+.+.++|..+.||..++-...++-..=+.-...+-++
T Consensus        87 avnt~~kD~~d~np~iR~lAlrtm~~----l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~  162 (734)
T KOG1061|consen   87 AVNTFLKDCEDPNPLIRALALRTMGC----LRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLV  162 (734)
T ss_pred             hhhhhhccCCCCCHHHHHHHhhceee----EeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchh
Confidence            45667778899999999988775544    45666778899999999999999999999988877655433323345566


Q ss_pred             HHHHHHHH
Q psy13759         97 GQVDRTSF  104 (114)
Q Consensus        97 P~i~~l~~  104 (114)
                      +.++.+.+
T Consensus       163 ~~L~~ll~  170 (734)
T KOG1061|consen  163 DALKDLLS  170 (734)
T ss_pred             HHHHHHhc
Confidence            66665554

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion

Probab=87.65  E-value=0.83  Score=25.88  Aligned_cols=25  Identities=16%  Similarity=0.171  Sum_probs=21.8

Q ss_pred             HhhHHHHHHhcCCCCHHHHHHHHHH
Q psy13759         15 SKSIKRTQDLVADPNQHVKSALASV   39 (114)
Q Consensus        15 ~~ilP~l~~L~~D~s~~VR~~~a~~   39 (114)
                      ..+...+..-+.|+++.||.++-+.
T Consensus        17 ~~v~~~i~~rl~D~s~~VR~aav~l   41 (42)
T PF12765_consen   17 SDVQSAIIRRLSDSSPSVREAAVDL   41 (42)
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHHH
Confidence            4688999999999999999998763

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=87.12  E-value=6.6  Score=30.55  Aligned_cols=93  Identities=11%  Similarity=0.070  Sum_probs=71.5

Q ss_pred             HHHhhHHHHHHhcCCCCHHHHHHHHHHHHc--cccccCc-chhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC--
Q psy13759         13 FVSKSIKRTQDLVADPNQHVKSALASVIMG--LSPILGK-HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG--   87 (114)
Q Consensus        13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~--la~~lg~-e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~--   87 (114)
                      ....++..+.....+.+..+|..+++-+.+  ++..+.. ...-+.++-.+.+=-..+..++|....-=++.++..=.  
T Consensus       111 ~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~  190 (298)
T PF12719_consen  111 DSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPEN  190 (298)
T ss_pred             hHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHH
Confidence            455688888888888899999999999999  4566766 66666666666666666677999988888888877543  


Q ss_pred             hhhHhhhHhHHHHHHHHH
Q psy13759         88 IQQDVSFKLGQVDRTSFL  105 (114)
Q Consensus        88 ~~~i~~~iLP~i~~l~~~  105 (114)
                      .+.+.+.++|.+..++..
T Consensus       191 Q~~l~~~f~~~l~~~~~~  208 (298)
T PF12719_consen  191 QERLAEAFLPTLRTLSNA  208 (298)
T ss_pred             HHHHHHHHHHHHHHHHhC
Confidence            456888899999887654

>KOG0212|consensus

Probab=87.00  E-value=3.5  Score=36.06  Aligned_cols=77  Identities=18%  Similarity=0.057  Sum_probs=62.1

Q ss_pred             hHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhh--hhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759         11 GNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTV--DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG   87 (114)
Q Consensus        11 ~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~--~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~   87 (114)
                      ..-...++|.++.=..+.++.+|..+.+-+.-+=..=+-+...  .++++.+.++|.|+..|||...-.-++.|-..+.
T Consensus       162 tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~  240 (675)
T KOG0212|consen  162 TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIR  240 (675)
T ss_pred             ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh
Confidence            3446679999999999999999999999887765544444443  6899999999999999999888887777777663

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=86.92  E-value=1.2  Score=38.45  Aligned_cols=57  Identities=16%  Similarity=0.058  Sum_probs=39.6

Q ss_pred             CCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhh
Q psy13759         28 PNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVI   86 (114)
Q Consensus        28 ~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l   86 (114)
                      .+..++..+|+.|...-..|+.-  .+.-+-..+.||.|++..||..|+..|+.+|+--
T Consensus        34 g~~k~K~Laaq~I~kffk~FP~l--~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~   90 (556)
T PF05918_consen   34 GSPKEKRLAAQFIPKFFKHFPDL--QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN   90 (556)
T ss_dssp             S-HHHHHHHHHHHHHHHCC-GGG--HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T-
T ss_pred             CCHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH
Confidence            46778888888888888777643  2456777888888888888888888888888753

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG2025|consensus

Probab=86.89  E-value=2  Score=38.52  Aligned_cols=93  Identities=16%  Similarity=0.128  Sum_probs=62.9

Q ss_pred             hhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhc-CCCChHHHHHHHHhHHHHHhhhC-
Q psy13759         10 DGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQL-KDECPEVRLNIISNLDCVNEVIG-   87 (114)
Q Consensus        10 ~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL-~D~e~EVR~~a~~~l~~~~~~l~-   87 (114)
                      ++..-+.+.--+..-..|+.+.||.-+.-.+..+..--+.+..  .+...|..++ +|+++|||.+++.++..=++.+| 
T Consensus       120 dd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~--~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~  197 (892)
T KOG2025|consen  120 DDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEEC--PVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPC  197 (892)
T ss_pred             CHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcc--cHHHHHHHHHhcCCcHHHHHHHHHhhccCcccchh
Confidence            4455566666666677899999999999999988754333332  3555555555 57999999999999875554443 


Q ss_pred             ------------hhhHhhhHhHHHHHHHHH
Q psy13759         88 ------------IQQDVSFKLGQVDRTSFL  105 (114)
Q Consensus        88 ------------~~~i~~~iLP~i~~l~~~  105 (114)
                                  -..+-+.++|-+ .+.++
T Consensus       198 IveRarDV~~anRrlvY~r~lpki-d~r~l  226 (892)
T KOG2025|consen  198 IVERARDVSGANRRLVYERCLPKI-DLRSL  226 (892)
T ss_pred             HHHHhhhhhHHHHHHHHHHhhhhh-hhhhh
Confidence                        112556677776 44443

>KOG0414|consensus

Probab=86.55  E-value=0.92  Score=42.19  Aligned_cols=69  Identities=17%  Similarity=0.225  Sum_probs=52.8

Q ss_pred             ChhHHHHhhHHHH-HHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHH
Q psy13759          9 SDGNFVSKSIKRT-QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLD   80 (114)
Q Consensus         9 ~~~~~~~~ilP~l-~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~   80 (114)
                      +.+.+. .-+|.+ ..+-+-++++||+.+.-.+++++=.++.  ..+..-+++..-|+|++++||..|+.-+.
T Consensus       954 Sa~fce-s~l~llftimeksp~p~IRsN~VvalgDlav~fpn--lie~~T~~Ly~rL~D~~~~vRkta~lvls 1023 (1251)
T KOG0414|consen  954 SAEFCE-SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN--LIEPWTEHLYRRLRDESPSVRKTALLVLS 1023 (1251)
T ss_pred             hHHHHH-HHHHHHHHHHhcCCCceeeecchheccchhhhccc--ccchhhHHHHHHhcCccHHHHHHHHHHHH
Confidence            444444 445555 5677799999999999999999966653  33456689999999999999999986554

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=86.13  E-value=4  Score=34.56  Aligned_cols=71  Identities=13%  Similarity=0.140  Sum_probs=33.5

Q ss_pred             HHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCC---ChHHHHHHHHhHHHHHhhhChhhHhhhHhHH
Q psy13759         22 QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDE---CPEVRLNIISNLDCVNEVIGIQQDVSFKLGQ   98 (114)
Q Consensus        22 ~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~---e~EVR~~a~~~l~~~~~~l~~~~i~~~iLP~   98 (114)
                      ....+..+...|..+-..+++++.        ...+|.+..++.+.   ..++|.+|+.++..++... ++.+.+.++|.
T Consensus       496 ~~~~~~~~~~~~~~~LkaLgN~g~--------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-~~~v~~~l~~I  566 (618)
T PF01347_consen  496 KEAVSRGDEEEKIVYLKALGNLGH--------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-PEKVREILLPI  566 (618)
T ss_dssp             HHHHHTT-HHHHHHHHHHHHHHT---------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--HHHHHHHHHHH
T ss_pred             HHHhhccCHHHHHHHHHHhhccCC--------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-cHHHHHHHHHH
Confidence            333344444555555555555441        13445555555554   5566666666666553333 33444555555


Q ss_pred             HHH
Q psy13759         99 VDR  101 (114)
Q Consensus        99 i~~  101 (114)
                      +.+
T Consensus       567 ~~n  569 (618)
T PF01347_consen  567 FMN  569 (618)
T ss_dssp             HH-
T ss_pred             hcC
Confidence            543

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG1820|consensus

Probab=85.94  E-value=3.7  Score=37.05  Aligned_cols=82  Identities=12%  Similarity=0.021  Sum_probs=72.0

Q ss_pred             CChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccC---cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759          8 NSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILG---KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE   84 (114)
Q Consensus         8 ~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg---~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~   84 (114)
                      +++..+.+++-|.+.....|+.|.=|..+.+.+.++.+.-+   .+.....+....-..++|.+.-|-..++..+..++.
T Consensus       245 l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~  324 (815)
T KOG1820|consen  245 LPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAK  324 (815)
T ss_pred             CchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHH
Confidence            67888999999999999999999999999999999885555   344445678888899999999999999999999999


Q ss_pred             hhChh
Q psy13759         85 VIGIQ   89 (114)
Q Consensus        85 ~l~~~   89 (114)
                      .++..
T Consensus       325 ~lr~~  329 (815)
T KOG1820|consen  325 KLRPL  329 (815)
T ss_pred             hcchh
Confidence            99865

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=85.73  E-value=1.7  Score=36.72  Aligned_cols=64  Identities=22%  Similarity=0.279  Sum_probs=41.3

Q ss_pred             hhHHHHHHhcCCC---CHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHH
Q psy13759         16 KSIKRTQDLVADP---NQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV   82 (114)
Q Consensus        16 ~ilP~l~~L~~D~---s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~   82 (114)
                      .++|.+...+.+.   +.++|.++...+..++... ++.+.+.++|+|.+-  .+.+|||.+|...+-.-
T Consensus       521 ~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-~~~v~~~l~~I~~n~--~e~~EvRiaA~~~lm~~  587 (618)
T PF01347_consen  521 ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-PEKVREILLPIFMNT--TEDPEVRIAAYLILMRC  587 (618)
T ss_dssp             GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--HHHHHHHHHHHHH-T--TS-HHHHHHHHHHHHHT
T ss_pred             hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-cHHHHHHHHHHhcCC--CCChhHHHHHHHHHHhc
Confidence            4666666666666   8999999999999885433 334444555555442  24788999998777653

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=85.21  E-value=1.7  Score=22.94  Aligned_cols=29  Identities=17%  Similarity=0.212  Sum_probs=25.7

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHccc
Q psy13759         16 KSIKRTQDLVADPNQHVKSALASVIMGLS   44 (114)
Q Consensus        16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la   44 (114)
                      ..+|.+..+++..+++++..++..+..++
T Consensus        12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185       12 GGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            37888888888889999999999998876

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=84.84  E-value=1.7  Score=38.27  Aligned_cols=64  Identities=19%  Similarity=0.074  Sum_probs=52.1

Q ss_pred             hcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCC-ChHHHHHHHHhHHHHHhhhChhhHhh
Q psy13759         24 LVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDE-CPEVRLNIISNLDCVNEVIGIQQDVS   93 (114)
Q Consensus        24 L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~-e~EVR~~a~~~l~~~~~~l~~~~i~~   93 (114)
                      ..+|.+..||+++...++-+|-.      .-.++|-.++||.|+ .++||...+-.+.-.|..-|...-..
T Consensus       560 avsD~nDDVrRAAViAlGfvc~~------D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a~d  624 (926)
T COG5116         560 AVSDGNDDVRRAAVIALGFVCCD------DRDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKVATD  624 (926)
T ss_pred             ecccCchHHHHHHHHheeeeEec------CcchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHHHHH
Confidence            57899999999999998888721      126788889999986 99999999999998888887664433

>KOG1077|consensus

Probab=84.67  E-value=6.3  Score=35.48  Aligned_cols=90  Identities=12%  Similarity=0.160  Sum_probs=72.0

Q ss_pred             hHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCc-chhhhhhHHHHHHhcC-CCChHHHHHHHHhHHHHHhhhCh
Q psy13759         11 GNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGK-HNTVDHLLPLFLSQLK-DECPEVRLNIISNLDCVNEVIGI   88 (114)
Q Consensus        11 ~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~-e~~~~~llP~~~~LL~-D~e~EVR~~a~~~l~~~~~~l~~   88 (114)
                      .+....-+-.+-++.+++....||-+-+.++.+|..-.. +..+.+ .-.+++.|+ +.+.-||.-++.=+..||..=..
T Consensus       324 ~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~~Na  402 (938)
T KOG1077|consen  324 PELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNA  402 (938)
T ss_pred             HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhchhhH
Confidence            344555666677788999999999999999999955333 444445 777888888 88999999999999999999998


Q ss_pred             hhHhhhHhHHHHH
Q psy13759         89 QQDVSFKLGQVDR  101 (114)
Q Consensus        89 ~~i~~~iLP~i~~  101 (114)
                      .+|++.+|-++..
T Consensus       403 k~IV~elLqYL~t  415 (938)
T KOG1077|consen  403 KQIVAELLQYLET  415 (938)
T ss_pred             HHHHHHHHHHHhh
Confidence            8888888876653

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=84.43  E-value=4.5  Score=33.00  Aligned_cols=67  Identities=13%  Similarity=0.144  Sum_probs=50.7

Q ss_pred             hhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHh
Q psy13759         10 DGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISN   78 (114)
Q Consensus        10 ~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~   78 (114)
                      .+.+.++|+|-++ -..+..+-+|..+..-+..+...++++.. ..++|.+++.|++++.=|+.=|+..
T Consensus       303 ~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l-~~~~~~l~~~L~~~~~vv~tyAA~~  369 (370)
T PF08506_consen  303 VDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQL-LQIFPLLVNHLQSSSYVVHTYAAIA  369 (370)
T ss_dssp             HHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHH-HHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred             HHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHH-HHHHHHHHHHhCCCCcchhhhhhhh
Confidence            3456778999988 45566777999999999999999887654 4699999999999999999877654

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG1248|consensus

Probab=84.34  E-value=11  Score=35.43  Aligned_cols=95  Identities=11%  Similarity=0.094  Sum_probs=72.0

Q ss_pred             hhHHHHhhHHHHHHhcCCCCHHHHHH----HHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759         10 DGNFVSKSIKRTQDLVADPNQHVKSA----LASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV   85 (114)
Q Consensus        10 ~~~~~~~ilP~l~~L~~D~s~~VR~~----~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~   85 (114)
                      ++...++.++.+....--.+.|++.+    +...+.+....+ .+.+...++..+...+.-+.+|+|.+|++-+.-++..
T Consensus       779 ~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~l-d~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~  857 (1176)
T KOG1248|consen  779 ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNIL-DDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYK  857 (1176)
T ss_pred             hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHc
Confidence            36788899999988887888888876    333344444333 3445567889999999999999999999999999999


Q ss_pred             hChhhH---hhhHhHHHHHHHHH
Q psy13759         86 IGIQQD---VSFKLGQVDRTSFL  105 (114)
Q Consensus        86 l~~~~i---~~~iLP~i~~l~~~  105 (114)
                      ++...+   .+.|||.+-+++.-
T Consensus       858 ~pe~~l~~~~~~LL~sll~ls~d  880 (1176)
T KOG1248|consen  858 FPEECLSPHLEELLPSLLALSHD  880 (1176)
T ss_pred             CCHHHHhhhHHHHHHHHHHHHHh
Confidence            987754   44567877776654

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=83.94  E-value=14  Score=32.07  Aligned_cols=65  Identities=15%  Similarity=0.208  Sum_probs=45.2

Q ss_pred             HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhH
Q psy13759         13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNL   79 (114)
Q Consensus        13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l   79 (114)
                      ..+.-+-.+..|+.|.+..||..+-..+..+|..-+..  ...+.-++.+||+-+++..+.++-+++
T Consensus        56 l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~--v~kvaDvL~QlL~tdd~~E~~~v~~sL  120 (556)
T PF05918_consen   56 LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEH--VSKVADVLVQLLQTDDPVELDAVKNSL  120 (556)
T ss_dssp             GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T---HHHHHHHHHHHTT---HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHH--HhHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            34556777788999999999999999999999764433  346788888999988877777776666

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG2160|consensus

Probab=83.82  E-value=13  Score=30.32  Aligned_cols=71  Identities=13%  Similarity=0.083  Sum_probs=51.6

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHccccccCc--chhhh-h-hHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759         17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGK--HNTVD-H-LLPLFLSQLKDECPEVRLNIISNLDCVNEVIG   87 (114)
Q Consensus        17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~--e~~~~-~-llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~   87 (114)
                      .++.+....++++..||..+|..++..++.-++  +...+ . +-+++..|-+|..-+||..|..+++.....-.
T Consensus       125 gl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~  199 (342)
T KOG2160|consen  125 GLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNK  199 (342)
T ss_pred             CHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCc
Confidence            444444499999999999999999998865553  33333 2 44455556678899999999999987766543

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=83.46  E-value=7.2  Score=31.81  Aligned_cols=85  Identities=14%  Similarity=0.143  Sum_probs=64.3

Q ss_pred             HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccC---------------cchhhhhhHHHHHHhcCCCChHHHHHHHHh
Q psy13759         14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILG---------------KHNTVDHLLPLFLSQLKDECPEVRLNIISN   78 (114)
Q Consensus        14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg---------------~e~~~~~llP~~~~LL~D~e~EVR~~a~~~   78 (114)
                      ..+++..+-.+..|  +.+...+|+.|.-+....+               ++..-..++|.+++-.++...+.|.+....
T Consensus       269 ~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~A  346 (415)
T PF12460_consen  269 ATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTA  346 (415)
T ss_pred             HHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHH
Confidence            44566666667777  8889999998888764421               222224589999999999999999999999


Q ss_pred             HHHHHhhhChhhH---hhhHhHHHH
Q psy13759         79 LDCVNEVIGIQQD---VSFKLGQVD  100 (114)
Q Consensus        79 l~~~~~~l~~~~i---~~~iLP~i~  100 (114)
                      +..+.+.++.+.+   ...++|.+.
T Consensus       347 Ls~ll~~vP~~vl~~~l~~LlPLLl  371 (415)
T PF12460_consen  347 LSHLLKNVPKSVLLPELPTLLPLLL  371 (415)
T ss_pred             HHHHHhhCCHHHHHHHHHHHHHHHH
Confidence            9999999998754   356778764

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG2025|consensus

Probab=82.12  E-value=6.9  Score=35.23  Aligned_cols=74  Identities=18%  Similarity=0.238  Sum_probs=58.3

Q ss_pred             hHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccC--cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759         11 GNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILG--KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE   84 (114)
Q Consensus        11 ~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg--~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~   84 (114)
                      +.+.+.++-.+-+-..-++-.||+-++..+..+....+  .|..-+.+.--+..=+.|.||-||..|+..++.+-.
T Consensus        80 ~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~  155 (892)
T KOG2025|consen   80 EDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQG  155 (892)
T ss_pred             hhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc
Confidence            34555566666666777888999999999888876333  455557788888888999999999999999999884

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=82.11  E-value=6  Score=35.80  Aligned_cols=71  Identities=14%  Similarity=0.099  Sum_probs=57.5

Q ss_pred             HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchh-hhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759         13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNT-VDHLLPLFLSQLKDECPEVRLNIISNLDCVN   83 (114)
Q Consensus        13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~-~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~   83 (114)
                      ..+.++..+..-.+|.++-+|+-+-..+..++..=.+-.- ..++......-++|....||.++++-.+++.
T Consensus       343 ~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL  414 (1128)
T COG5098         343 KLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLL  414 (1128)
T ss_pred             HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            4556788888889999999999999988888855444333 3478899999999999999999998877654

>KOG2149|consensus

Probab=81.96  E-value=14  Score=30.75  Aligned_cols=99  Identities=21%  Similarity=0.219  Sum_probs=73.3

Q ss_pred             cchhccCChhHHHHh---hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcch---hhhhhHHHHHHhcCCCChHHHHHH
Q psy13759          2 KLLLTINSDGNFVSK---SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHN---TVDHLLPLFLSQLKDECPEVRLNI   75 (114)
Q Consensus         2 ~~l~~~~~~~~~~~~---ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~---~~~~llP~~~~LL~D~e~EVR~~a   75 (114)
                      |++.+. .|.....+   +++.+..+..|.+..||...-+.+..+....+++.   -..-+.|++..-+.--.++||.-+
T Consensus        83 kd~l~s-~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~~yi~~AMThit~~i~~ds  161 (393)
T KOG2149|consen   83 KDLLKS-HPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLMPYISSAMTHITPEIQEDS  161 (393)
T ss_pred             HHHHHh-ChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHHHHHHHHHhhccHHHHHhh
Confidence            344444 45555544   66777788999999999999998888777777666   113578888888888999999999


Q ss_pred             HHhHHHHHhhhChhhHh--hhHhHHHHH
Q psy13759         76 ISNLDCVNEVIGIQQDV--SFKLGQVDR  101 (114)
Q Consensus        76 ~~~l~~~~~~l~~~~i~--~~iLP~i~~  101 (114)
                      +.-+.-+....++....  ..+++.+..
T Consensus       162 lkfL~~Ll~~~~p~~~~~~~~il~n~~d  189 (393)
T KOG2149|consen  162 LKFLSLLLERYPDTFSRYASKILENFKD  189 (393)
T ss_pred             HHHHHHHHHHcChHHHHHHHHHHHHHHH
Confidence            99999999999877432  235665543

>KOG1078|consensus

Probab=80.79  E-value=3.2  Score=37.35  Aligned_cols=80  Identities=23%  Similarity=0.125  Sum_probs=57.5

Q ss_pred             cchhccCChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHH
Q psy13759          2 KLLLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC   81 (114)
Q Consensus         2 ~~l~~~~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~   81 (114)
                      ++||+-.|....-+.-+-.+.+.+-=.+..||.++...+.+++  .|.+.....+.-.+...+.|.+-|||-.|.-.+..
T Consensus       452 hlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~  529 (865)
T KOG1078|consen  452 HLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKN  529 (865)
T ss_pred             HHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence            3455555422222222223333444467899999999999998  77777788899999999999999999999887776


Q ss_pred             HH
Q psy13759         82 VN   83 (114)
Q Consensus        82 ~~   83 (114)
                      +-
T Consensus       530 l~  531 (865)
T KOG1078|consen  530 LE  531 (865)
T ss_pred             hh
Confidence            65

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	114
3dw8_A	582	Structure Of A Protein Phosphatase 2a Holoenzyme Wi		4e-31
2pkg_A	580	Structure Of A Complex Between The A Subunit Of Pro		4e-31
2iae_A	589	Crystal Structure Of A Protein Phosphatase 2a (Pp2a		4e-31
2ie3_A	589	Structure Of The Protein Phosphatase 2a Core Enzyme		4e-31
1b3u_A	588	Crystal Structure Of Constant Regulatory Domain Of		4e-31
3fga_A	588	Structural Basis Of Pp2a And Sgo Interaction Length		4e-31
2nyl_A	582	Crystal Structure Of Protein Phosphatase 2a (Pp2a)		3e-30

>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55 Subunit Length = 582

Iteration: 1
 Score =  129 bits (324), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 60/69 (86%), Positives = 67/69 (97%)
Query: 22  QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
           ++LV+D NQHVKSALASVIMGLSPILGK NT++HLLPLFL+QLKDECPEVRLNIISNLDC
Sbjct: 324 KELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDC 383
Query: 82  VNEVIGIQQ 90
           VNEVIGI+Q
Sbjct: 384 VNEVIGIRQ 392

>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein Phosphatase 2a And The Small T Antigen Of Sv40 Length = 580

Iteration: 1
 Score =  129 bits (324), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 60/69 (86%), Positives = 67/69 (97%)
Query: 22  QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
           ++LV+D NQHVKSALASVIMGLSPILGK NT++HLLPLFL+QLKDECPEVRLNIISNLDC
Sbjct: 322 KELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDC 381
Query: 82  VNEVIGIQQ 90
           VNEVIGI+Q
Sbjct: 382 VNEVIGIRQ 390

>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a) Holoenzyme. Length = 589

Iteration: 1
 Score =  129 bits (324), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 60/69 (86%), Positives = 67/69 (97%)
Query: 22  QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
           ++LV+D NQHVKSALASVIMGLSPILGK NT++HLLPLFL+QLKDECPEVRLNIISNLDC
Sbjct: 331 KELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDC 390
Query: 82  VNEVIGIQQ 90
           VNEVIGI+Q
Sbjct: 391 VNEVIGIRQ 399

>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound To Tumor- Inducing Toxins Length = 589

Iteration: 1
 Score =  129 bits (324), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 60/69 (86%), Positives = 67/69 (97%)
Query: 22  QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
           ++LV+D NQHVKSALASVIMGLSPILGK NT++HLLPLFL+QLKDECPEVRLNIISNLDC
Sbjct: 331 KELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDC 390
Query: 82  VNEVIGIQQ 90
           VNEVIGI+Q
Sbjct: 391 VNEVIGIRQ 399

>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human Pp2a, Pr65alpha Length = 588

Iteration: 1
 Score =  129 bits (324), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 60/69 (86%), Positives = 67/69 (97%)
Query: 22  QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
           ++LV+D NQHVKSALASVIMGLSPILGK NT++HLLPLFL+QLKDECPEVRLNIISNLDC
Sbjct: 330 KELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDC 389
Query: 82  VNEVIGIQQ 90
           VNEVIGI+Q
Sbjct: 390 VNEVIGIRQ 398

>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction Length = 588

Iteration: 1
 Score =  129 bits (324), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 60/69 (86%), Positives = 67/69 (97%)
Query: 22  QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
           ++LV+D NQHVKSALASVIMGLSPILGK NT++HLLPLFL+QLKDECPEVRLNIISNLDC
Sbjct: 330 KELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDC 389
Query: 82  VNEVIGIQQ 90
           VNEVIGI+Q
Sbjct: 390 VNEVIGIRQ 398

>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) Holoenzyme With The Catalytic Subunit Carboxyl Terminus Truncated Length = 582

Iteration: 1
 Score =  126 bits (317), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 59/69 (85%), Positives = 66/69 (95%)
Query: 22  QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
           ++LV+D NQHVKSALASVI GLSPILGK NT++HLLPLFL+QLKDECPEVRLNIISNLDC
Sbjct: 324 KELVSDANQHVKSALASVIXGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDC 383
Query: 82  VNEVIGIQQ 90
           VNEVIGI+Q
Sbjct: 384 VNEVIGIRQ 392

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	114
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	2e-18
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	7e-07
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	3e-06
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	3e-05
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	1e-04
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	2e-04
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	4e-05

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 78.1 bits (192), Expect = 2e-18
 Identities = 60/69 (86%), Positives = 67/69 (97%)

Query: 22  QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
           ++LV+D NQHVKSALASVIMGLSPILGK NT++HLLPLFL+QLKDECPEVRLNIISNLDC
Sbjct: 330 KELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDC 389

Query: 82  VNEVIGIQQ 90
           VNEVIGI+Q
Sbjct: 390 VNEVIGIRQ 398

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 45.4 bits (107), Expect = 7e-07
 Identities = 15/77 (19%), Positives = 34/77 (44%)

Query: 18  IKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIIS 77
            +  ++L +D    V+ A AS +   + +L   N    ++P+F +   DE   VRL  + 
Sbjct: 166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVE 225

Query: 78  NLDCVNEVIGIQQDVSF 94
               + +++  +   + 
Sbjct: 226 ACVNIAQLLPQEDLEAL 242

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 43.5 bits (102), Expect = 3e-06
 Identities = 20/90 (22%), Positives = 34/90 (37%)

Query: 1   MKLLLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLF 60
           +K L+         +  I +   +  DPN   +      I  LS + G+  T  H+LP  
Sbjct: 465 LKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTV 524

Query: 61  LSQLKDECPEVRLNIISNLDCVNEVIGIQQ 90
           L    D    VR N+  +L  +  ++    
Sbjct: 525 LRMAGDPVANVRFNVAKSLQKIGPILDNST 554

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 40.4 bits (94), Expect = 3e-05
 Identities = 15/66 (22%), Positives = 25/66 (37%)

Query: 22  QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
           +    D +  V+  +A     L   +G   T   L+P F + +KD   EVR      +  
Sbjct: 248 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKE 307

Query: 82  VNEVIG 87
             E + 
Sbjct: 308 FCENLS 313

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 38.5 bits (89), Expect = 1e-04
 Identities = 9/72 (12%), Positives = 28/72 (38%)

Query: 22  QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
            +L +D    V+       + ++ +L + +    ++P      +D+   VR  +      
Sbjct: 209 SNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTE 268

Query: 82  VNEVIGIQQDVS 93
           + + +G +   +
Sbjct: 269 LQKAVGPEITKT 280

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 38.5 bits (89), Expect = 2e-04
 Identities = 18/80 (22%), Positives = 32/80 (40%)

Query: 22  QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC 81
            +L  D    V+ A+   +  L+  LG     + L  L ++ L D    +R    SNL  
Sbjct: 408 VELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKK 467

Query: 82  VNEVIGIQQDVSFKLGQVDR 101
           + E  G +   +  + +V  
Sbjct: 468 LVEKFGKEWAHATIIPKVLA 487

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Length = 244

 Score = 39.9 bits (93), Expect = 4e-05
 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 16/58 (27%)

Query: 23  DLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLD 80
           +L+ DP+  V+ A                  +H     L +L +  PEVRL I   L 
Sbjct: 201 ELLHDPDWTVRLAAV----------------EHASLEALRELDEPDPEVRLAIAGRLG 242

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	114
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.42
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.32
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.98
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	98.86
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.77
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.65
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.64
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.64
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.49
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.48
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.48
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.33
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.28
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.28
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	98.27
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.24
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	98.24
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.23
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.23
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.23
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.16
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	98.08
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	98.06
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	98.02
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.0
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	97.93
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	97.92
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	97.85
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	97.83
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	97.82
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.82
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	97.79
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	97.74
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	97.74
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	97.72
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	97.7
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	97.67
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.66
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	97.59
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	97.57
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	97.56
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.56
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	97.51
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	97.47
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.43
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	97.43
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	97.38
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	97.36
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	97.35
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	97.26
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	97.25
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	97.06
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	96.99
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	96.91
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	96.8
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	96.75
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	96.73
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	96.6
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	96.59
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	96.58
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	96.54
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	96.5
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	96.48
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	96.48
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	96.28
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	96.26
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	96.24
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	96.21
2x1g_F	971	Cadmus; transport protein, developmental protein,	96.19
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	96.18
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	95.99
2x19_B	963	Importin-13; nuclear transport, protein transport;	95.93
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	95.92
2x1g_F	971	Cadmus; transport protein, developmental protein,	95.81
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	95.78
2x19_B	963	Importin-13; nuclear transport, protein transport;	95.74
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	95.68
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	95.53
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	95.49
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	95.35
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	95.22
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	95.15
3nmz_A	458	APC variant protein; protein-protein complex, arma	95.04
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	94.76
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	94.67
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	94.65
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	94.63
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	94.48
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	94.39
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	94.32
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	94.11
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	94.04
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	93.83
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	93.82
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	93.64
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	93.35
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	92.87
3nmz_A	458	APC variant protein; protein-protein complex, arma	92.82
2b6c_A	220	Hypothetical protein EF3068; structural genomis, D	92.62
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	91.56
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	91.34
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	90.5
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	88.02
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	87.57
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	87.21
4atg_A	196	TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton	86.8
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	86.23
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	85.85
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	85.46
3jxy_A	232	Alkylpurine DNA glycosylase ALKD; heat repeat, DNA	85.08
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	83.41
3ut4_A	134	CTHE_2751, putative uncharacterized protein; non P	83.27
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	82.73

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.42  E-value=5.8e-13  Score=105.91  Aligned_cols=99  Identities=17%  Similarity=0.174  Sum_probs=88.7

Q ss_pred             hhccCChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759          4 LLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN   83 (114)
Q Consensus         4 l~~~~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~   83 (114)
                      ++..++++.....++|.+..+.+|++|+||.++++.++.++..+|++.....++|.+.++++|++++||.+++..+..++
T Consensus       230 l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~  309 (588)
T 1b3u_A          230 IAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFC  309 (588)
T ss_dssp             HHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence            34456777778889999999999999999999999999999999998888899999999999999999999999999999


Q ss_pred             hhhChh----hHhhhHhHHHHHH
Q psy13759         84 EVIGIQ----QDVSFKLGQVDRT  102 (114)
Q Consensus        84 ~~l~~~----~i~~~iLP~i~~l  102 (114)
                      +.+|++    ...+.++|.+.++
T Consensus       310 ~~~~~~~~~~~~~~~l~p~l~~~  332 (588)
T 1b3u_A          310 ENLSADCRENVIMSQILPCIKEL  332 (588)
T ss_dssp             HTSCTTTHHHHHHHTHHHHHHHH
T ss_pred             HHhChhhhhhHHHHHHHHHHHHH
Confidence            999876    4567888888654

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.32  E-value=3.7e-12  Score=101.27  Aligned_cols=91  Identities=68%  Similarity=0.979  Sum_probs=85.0

Q ss_pred             HHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhH
Q psy13759         12 NFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQD   91 (114)
Q Consensus        12 ~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i   91 (114)
                      .....++|.+..+.+|++|+||.+++..++.+++.+|++.....++|.+..+++|++++||.+++..+..+++.+|.+..
T Consensus       320 ~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~  399 (588)
T 1b3u_A          320 VIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQL  399 (588)
T ss_dssp             HHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHH
Confidence            56788999999999999999999999999999999999888889999999999999999999999999999999998887


Q ss_pred             hhhHhHHHHHH
Q psy13759         92 VSFKLGQVDRT  102 (114)
Q Consensus        92 ~~~iLP~i~~l  102 (114)
                      .+.++|.+.++
T Consensus       400 ~~~~lp~l~~~  410 (588)
T 1b3u_A          400 SQSLLPAIVEL  410 (588)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            78899988764

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.98  E-value=2e-09  Score=83.07  Aligned_cols=85  Identities=14%  Similarity=0.133  Sum_probs=72.5

Q ss_pred             hhccCChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcc---hhhhhhHHHHHHhcCCCChHHHHHHHHhHH
Q psy13759          4 LLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKH---NTVDHLLPLFLSQLKDECPEVRLNIISNLD   80 (114)
Q Consensus         4 l~~~~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e---~~~~~llP~~~~LL~D~e~EVR~~a~~~l~   80 (114)
                      +++.++ +.....++|.+....+|++|++|.++...++.+++..+.+   .....++|.++.+++|++++||.+++..+.
T Consensus       355 l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~  433 (462)
T 1ibr_B          355 LATCCE-DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVG  433 (462)
T ss_dssp             HHHHTT-TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             HHHhcc-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            445555 5667789999999999999999999999999999755432   223679999999999999999999999999


Q ss_pred             HHHhhhChh
Q psy13759         81 CVNEVIGIQ   89 (114)
Q Consensus        81 ~~~~~l~~~   89 (114)
                      .+++.++++
T Consensus       434 ~~~~~~~~~  442 (462)
T 1ibr_B          434 RICELLPEA  442 (462)
T ss_dssp             HHHHHGGGG
T ss_pred             HHHHhcccc
Confidence            999999874

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=98.86  E-value=2.3e-09  Score=81.46  Aligned_cols=93  Identities=15%  Similarity=0.105  Sum_probs=74.1

Q ss_pred             chhccCChhHHHHhhHHHHHH-hcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHH
Q psy13759          3 LLLTINSDGNFVSKSIKRTQD-LVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC   81 (114)
Q Consensus         3 ~l~~~~~~~~~~~~ilP~l~~-L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~   81 (114)
                      +||.. +   ....++|.++. ++.|.+|+||+++|..+.+++...+++.    .+|.+...++|++++||..|+...-.
T Consensus        94 lLg~~-~---~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~----~l~~~~~W~~d~n~~VRR~Ase~~rp  165 (240)
T 3l9t_A           94 LFGYL-S---KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK----ALPIIDEWLKSSNLHTRRAATEGLRI  165 (240)
T ss_dssp             HHHHT-T---TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT----THHHHHHHHHCSSHHHHHHHHHHTCS
T ss_pred             HHHhc-c---CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH----HHHHHHHHhcCCCHHHHHHHHHhhHH
Confidence            45555 3   23679999998 9999999999999999999998667664    67899999999999999999998866


Q ss_pred             HHhhhChhhHhhhHhHHHHHHH
Q psy13759         82 VNEVIGIQQDVSFKLGQVDRTS  103 (114)
Q Consensus        82 ~~~~l~~~~i~~~iLP~i~~l~  103 (114)
                      .+.......-.+.++|++..|.
T Consensus       166 W~~~~~~k~dp~~ll~iL~~L~  187 (240)
T 3l9t_A          166 WTNRPYFKENPNEAIRRIADLK  187 (240)
T ss_dssp             GGGSTTTTTCHHHHHHHHHTTT
T ss_pred             HhccchhhcCHHHHHHHHHHhc
Confidence            6655333344566788887664

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.77  E-value=4.8e-08  Score=71.31  Aligned_cols=84  Identities=18%  Similarity=0.156  Sum_probs=69.3

Q ss_pred             HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcc----hhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhh
Q psy13759         15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKH----NTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ   90 (114)
Q Consensus        15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e----~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~   90 (114)
                      ..++|.+....+|++|+||..+...+..+....+++    .....++|.+..+++|+.++||.++...+..++..+|.+.
T Consensus       132 ~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~  211 (242)
T 2qk2_A          132 EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKA  211 (242)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHH
Confidence            568888888889999999999999999977666544    2335799999999999999999999999999999999865


Q ss_pred             HhhhHhHHH
Q psy13759         91 DVSFKLGQV   99 (114)
Q Consensus        91 i~~~iLP~i   99 (114)
                      + +.++|-+
T Consensus       212 ~-~~~l~~L  219 (242)
T 2qk2_A          212 V-TPLLADV  219 (242)
T ss_dssp             H-GGGGTTS
T ss_pred             H-HHHHHhc
Confidence            5 3344444

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.65  E-value=7.6e-08  Score=81.24  Aligned_cols=90  Identities=13%  Similarity=0.052  Sum_probs=74.2

Q ss_pred             hHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcch--hhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhCh
Q psy13759         11 GNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHN--TVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGI   88 (114)
Q Consensus        11 ~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~--~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~   88 (114)
                      +.....++|.+..+.+|++|++|.+++..++.+++..++..  ....++|.+..+++|++++||.+++..+..+++.++.
T Consensus       354 ~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~  433 (852)
T 4fdd_A          354 DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVS  433 (852)
T ss_dssp             GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            45667899999999999999999999999999998776532  3367999999999999999999999999999998865


Q ss_pred             h---hHhhhHhHHHH
Q psy13759         89 Q---QDVSFKLGQVD  100 (114)
Q Consensus        89 ~---~i~~~iLP~i~  100 (114)
                      +   .....++|.+.
T Consensus       434 ~~~~~~~~~ll~~L~  448 (852)
T 4fdd_A          434 QPPDTYLKPLMTELL  448 (852)
T ss_dssp             SCTTTTHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHH
Confidence            3   23344455443

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.64  E-value=1.2e-07  Score=78.71  Aligned_cols=90  Identities=12%  Similarity=0.090  Sum_probs=74.0

Q ss_pred             hHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcch---hhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759         11 GNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHN---TVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG   87 (114)
Q Consensus        11 ~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~---~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~   87 (114)
                      +.....++|.+....+|++|+||.+++..++.+++..+++.   ....++|.++..++|+.++||.+++..+..+++..+
T Consensus       361 ~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~  440 (876)
T 1qgr_A          361 DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP  440 (876)
T ss_dssp             GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred             HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCc
Confidence            34567899999999999999999999999999998877432   235789999999999999999999999999999987


Q ss_pred             hh----hHhhhHhHHHH
Q psy13759         88 IQ----QDVSFKLGQVD  100 (114)
Q Consensus        88 ~~----~i~~~iLP~i~  100 (114)
                      +.    ...+.++|.+.
T Consensus       441 ~~~~~~~~l~~~l~~l~  457 (876)
T 1qgr_A          441 EAAINDVYLAPLLQCLI  457 (876)
T ss_dssp             GGTSSTTTHHHHHHHHH
T ss_pred             hhcccHHHHHHHHHHHH
Confidence            53    23455555543

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.64  E-value=1.4e-07  Score=68.81  Aligned_cols=86  Identities=13%  Similarity=0.202  Sum_probs=71.4

Q ss_pred             HHhhHHHHHHhcC-CCCHHHHHHHHHHHHccccccCcchhh--hhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhh
Q psy13759         14 VSKSIKRTQDLVA-DPNQHVKSALASVIMGLSPILGKHNTV--DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ   90 (114)
Q Consensus        14 ~~~ilP~l~~L~~-D~s~~VR~~~a~~l~~la~~lg~e~~~--~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~   90 (114)
                      ..++++.+..++. |++.+||..++..++.++..+|++...  ..++|.++..++|..+.||.++...+..+++..+.+.
T Consensus        54 ~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~  133 (242)
T 2qk2_A           54 YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEA  133 (242)
T ss_dssp             CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHH
Confidence            3568888888884 999999999999999999988876433  5789999999999999999999999999999888766


Q ss_pred             HhhhHhHHH
Q psy13759         91 DVSFKLGQV   99 (114)
Q Consensus        91 i~~~iLP~i   99 (114)
                      +.+.++..+
T Consensus       134 ll~~l~~~l  142 (242)
T 2qk2_A          134 QQESIVESL  142 (242)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            655555544

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.49  E-value=6.5e-07  Score=75.56  Aligned_cols=77  Identities=13%  Similarity=0.153  Sum_probs=68.7

Q ss_pred             HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcc---hhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChh
Q psy13759         13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKH---NTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ   89 (114)
Q Consensus        13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e---~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~   89 (114)
                      ....++|.+..+.+|++++||.+++..++.+++.++.+   .....++|.+++.++|++++||.+++..+..+++..+.+
T Consensus       397 ~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~  476 (852)
T 4fdd_A          397 YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE  476 (852)
T ss_dssp             GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh
Confidence            45679999999999999999999999999999887753   344679999999999999999999999999999988865

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.48  E-value=6.8e-07  Score=74.07  Aligned_cols=90  Identities=11%  Similarity=0.105  Sum_probs=74.0

Q ss_pred             hHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchh---hhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759         11 GNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNT---VDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG   87 (114)
Q Consensus        11 ~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~---~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~   87 (114)
                      +.....++|.+...++|.+|++|.+++..++.+++..+++..   ...++|.+.+.++|+.+.||.+++..+..++..++
T Consensus       364 ~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~  443 (861)
T 2bpt_A          364 NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVA  443 (861)
T ss_dssp             GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHG
T ss_pred             HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhh
Confidence            445677899999999999999999999999999987763332   24689999999999999999999999999999987


Q ss_pred             hh----hHhhhHhHHHH
Q psy13759         88 IQ----QDVSFKLGQVD  100 (114)
Q Consensus        88 ~~----~i~~~iLP~i~  100 (114)
                      ++    ...+.++|.+.
T Consensus       444 ~~~~~~~~~~~~l~~l~  460 (861)
T 2bpt_A          444 ESIDPQQHLPGVVQACL  460 (861)
T ss_dssp             GGSCTTTTHHHHHHHHH
T ss_pred             hhcCCHHHHHHHHHHHH
Confidence            53    34566677654

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.48  E-value=5.8e-07  Score=67.17  Aligned_cols=78  Identities=9%  Similarity=0.184  Sum_probs=67.9

Q ss_pred             HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCc--c---hhh-hhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759         14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGK--H---NTV-DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG   87 (114)
Q Consensus        14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~--e---~~~-~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~   87 (114)
                      ...+++.+...+++++|+||..+...+..++...+.  +   ... ..++|.+.++++|+.++||.++...+..++..+|
T Consensus       144 l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG  223 (249)
T 2qk1_A          144 NEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFG  223 (249)
T ss_dssp             THHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence            346788888888999999999999999999988775  2   233 6899999999999999999999999999999999


Q ss_pred             hhhH
Q psy13759         88 IQQD   91 (114)
Q Consensus        88 ~~~i   91 (114)
                      .+.+
T Consensus       224 ~~~~  227 (249)
T 2qk1_A          224 MNTF  227 (249)
T ss_dssp             SGGG
T ss_pred             HHHH
Confidence            8654

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.33  E-value=2.3e-06  Score=57.16  Aligned_cols=58  Identities=14%  Similarity=0.235  Sum_probs=51.4

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759         18 IKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN   83 (114)
Q Consensus        18 lP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~   83 (114)
                      +|.+..+++|++|.||..++..++.+..        ...+|.+..+++|++++||.+++..+..++
T Consensus        44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~  101 (131)
T 1te4_A           44 FEPLLESLSNEDWRIRGAAAWIIGNFQD--------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG  101 (131)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            4888888999999999999999998863        346899999999999999999999998876

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.28  E-value=3.8e-06  Score=69.02  Aligned_cols=81  Identities=16%  Similarity=0.149  Sum_probs=67.7

Q ss_pred             hhccCChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhh-hhhHHHHHHhcCCCChHHHHHHHHhHHHH
Q psy13759          4 LLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTV-DHLLPLFLSQLKDECPEVRLNIISNLDCV   82 (114)
Q Consensus         4 l~~~~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~-~~llP~~~~LL~D~e~EVR~~a~~~l~~~   82 (114)
                      ||... ..++...++|.+..++.|+++.||..++..+..+++.- ++... ..++|.+.++|+|+++.||.+|+..+..+
T Consensus       110 L~~i~-~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i  187 (591)
T 2vgl_B          110 MGCIR-VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN-AQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEI  187 (591)
T ss_dssp             HHTCC-SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-CCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHH
T ss_pred             HHcCC-hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhC-hhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence            44444 34456778999999999999999999999999999844 44444 47999999999999999999999999999


Q ss_pred             Hhhh
Q psy13759         83 NEVI   86 (114)
Q Consensus        83 ~~~l   86 (114)
                      ++.-
T Consensus       188 ~~~~  191 (591)
T 2vgl_B          188 SESH  191 (591)
T ss_dssp             TTSC
T ss_pred             HhhC
Confidence            8754

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.28  E-value=2.5e-06  Score=65.60  Aligned_cols=87  Identities=16%  Similarity=0.137  Sum_probs=68.7

Q ss_pred             HHhhHHHHHHhcC-------CCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhh
Q psy13759         14 VSKSIKRTQDLVA-------DPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVI   86 (114)
Q Consensus        14 ~~~ilP~l~~L~~-------D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l   86 (114)
                      ...++|.+.....       |.+|.+|.+++..+..++..+| +.....++|.+.+.++|+++.+|.+++..+..+++..
T Consensus       319 ~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~  397 (462)
T 1ibr_B          319 LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGP  397 (462)
T ss_dssp             HHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS
T ss_pred             hhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCC
Confidence            3567887755442       5689999999999999999999 4556789999999999999999999999999999866


Q ss_pred             Chhh---HhhhHhHHHHH
Q psy13759         87 GIQQ---DVSFKLGQVDR  101 (114)
Q Consensus        87 ~~~~---i~~~iLP~i~~  101 (114)
                      +++.   ....++|.+.+
T Consensus       398 ~~~~~~~~l~~~~~~l~~  415 (462)
T 1ibr_B          398 EPSQLKPLVIQAMPTLIE  415 (462)
T ss_dssp             CTTTTCTTTTTHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHH
Confidence            5332   23456665543

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=98.27  E-value=7.2e-06  Score=57.47  Aligned_cols=58  Identities=19%  Similarity=0.198  Sum_probs=35.2

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHH
Q psy13759         17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV   82 (114)
Q Consensus        17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~   82 (114)
                      .+|.+..+++|++|.||..++..++.+..        ...+|.+..+++|++++||.+++..+..+
T Consensus       108 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~  165 (201)
T 3ltj_A          108 AVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVEPLIKALKDEDGWVRQSAADALGEI  165 (201)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            44555555566666666666666655532        24556666666666666666666666655

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.24  E-value=7.1e-06  Score=67.96  Aligned_cols=73  Identities=19%  Similarity=0.236  Sum_probs=65.1

Q ss_pred             HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcc----hhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759         14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKH----NTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG   87 (114)
Q Consensus        14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e----~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~   87 (114)
                      ...++|.+....+|++++||.+++..++.++..++.+    .....++|.+++.++|+ ++||.+++..+..+++..+
T Consensus       409 l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~  485 (861)
T 2bpt_A          409 VHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLA  485 (861)
T ss_dssp             HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcc
Confidence            4568899999999999999999999999999888764    35678999999999998 9999999999999999886

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=98.24  E-value=9.7e-06  Score=57.19  Aligned_cols=59  Identities=19%  Similarity=0.197  Sum_probs=37.1

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759         17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN   83 (114)
Q Consensus        17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~   83 (114)
                      .+|.+..+++|++|.||..++..++.+..        ...+|.+..+++|++++||.+++..+..+.
T Consensus       113 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~  171 (211)
T 3ltm_A          113 AVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVEPLIKALKDEDGWVRQSAADALGEIG  171 (211)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            45555566666666666666666666532        235666667777777777777776666653

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.23  E-value=4.7e-06  Score=62.21  Aligned_cols=85  Identities=16%  Similarity=0.130  Sum_probs=71.9

Q ss_pred             HhhHHHHHHhc-CCCCHHHHHHHHHHHHccccccC-cchh---hhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhh---
Q psy13759         15 SKSIKRTQDLV-ADPNQHVKSALASVIMGLSPILG-KHNT---VDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVI---   86 (114)
Q Consensus        15 ~~ilP~l~~L~-~D~s~~VR~~~a~~l~~la~~lg-~e~~---~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l---   86 (114)
                      .+++..+.... +|.+..||..++..++.+|+.++ ++..   ...++|.++..++|..+.||.++...+..+++.+   
T Consensus        59 ~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~  138 (249)
T 2qk1_A           59 SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL  138 (249)
T ss_dssp             HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccc
Confidence            45777777777 89999999999999999999998 6543   3578999999999999999999999999999999   


Q ss_pred             ---C-hhhHhhhHhHHH
Q psy13759         87 ---G-IQQDVSFKLGQV   99 (114)
Q Consensus        87 ---~-~~~i~~~iLP~i   99 (114)
                         + .+.+.+.+++.+
T Consensus       139 ~~~~~l~~ll~~l~~~l  155 (249)
T 2qk1_A          139 ASSGRNEDMLKDILEHM  155 (249)
T ss_dssp             CTTCTTHHHHHHHHHHT
T ss_pred             ccCCcHHHHHHHHHHHH
Confidence               5 556666666555

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.23  E-value=5.3e-06  Score=72.53  Aligned_cols=89  Identities=13%  Similarity=0.101  Sum_probs=74.6

Q ss_pred             HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChh---
Q psy13759         13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ---   89 (114)
Q Consensus        13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~---   89 (114)
                      ..+.++|.+...+.|++|+||.+++..+..+++.++. .....++|.+...+.|++++||.+++..+..++..++++   
T Consensus        45 ~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~  123 (1230)
T 1u6g_C           45 SERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG  123 (1230)
T ss_dssp             HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccc
Confidence            3457888888888899999999999999999988876 455789999999999999999999999999999999875   


Q ss_pred             -----hHhhhHhHHHHHH
Q psy13759         90 -----QDVSFKLGQVDRT  102 (114)
Q Consensus        90 -----~i~~~iLP~i~~l  102 (114)
                           ...+.++|.+.+.
T Consensus       124 ~~~~~~~~~~llp~L~~~  141 (1230)
T 1u6g_C          124 SALAANVCKKITGRLTSA  141 (1230)
T ss_dssp             CCTHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHH
Confidence                 2567788877653

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.23  E-value=1.3e-06  Score=58.42  Aligned_cols=58  Identities=12%  Similarity=0.147  Sum_probs=50.1

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHH
Q psy13759         16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDC   81 (114)
Q Consensus        16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~   81 (114)
                      ..+|.+..+++|++|.||.+++..++.+..        ...+|.+.++++|++++||.+++..+.+
T Consensus        73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           73 RAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence            357778888899999999999999998862        3578999999999999999999988754

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.16  E-value=9.1e-06  Score=67.43  Aligned_cols=74  Identities=20%  Similarity=0.280  Sum_probs=65.1

Q ss_pred             HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcc----hhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759         13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKH----NTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG   87 (114)
Q Consensus        13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e----~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~   87 (114)
                      ....++|.+....+|++++||.+++..++.+++.++..    .....++|.+++.++|+ +.||.+++..+..+++..+
T Consensus       405 ~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~  482 (876)
T 1qgr_A          405 LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAY  482 (876)
T ss_dssp             HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhh
Confidence            45668999999999999999999999999999888763    44568999999999996 9999999999999998765

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=98.08  E-value=2.2e-05  Score=55.30  Aligned_cols=59  Identities=17%  Similarity=0.198  Sum_probs=36.0

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759         17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN   83 (114)
Q Consensus        17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~   83 (114)
                      .+|.+..+++|+++.||..++..++.++.        ...+|.+.++++|++++||..++..+..++
T Consensus        82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~  140 (211)
T 3ltm_A           82 AVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIG  140 (211)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence            44555555566666666666666655542        235566677777777777777777666653

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=98.06  E-value=3e-05  Score=54.20  Aligned_cols=59  Identities=17%  Similarity=0.198  Sum_probs=35.7

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759         17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN   83 (114)
Q Consensus        17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~   83 (114)
                      .+|.+..+++|+++.||..++..+..+..        ...+|.+..+++|++++||..++..+..+.
T Consensus        77 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~  135 (201)
T 3ltj_A           77 AVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIG  135 (201)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            44555555566666666666666655432        235566666677777777777766666554

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=98.02  E-value=2.7e-05  Score=57.16  Aligned_cols=59  Identities=24%  Similarity=0.258  Sum_probs=33.3

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHH
Q psy13759         16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV   82 (114)
Q Consensus        16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~   82 (114)
                      .++|.+..+++|++|.||.+++..++.++.        ...+|.+..+++|++++||..++..+..+
T Consensus       128 ~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~  186 (280)
T 1oyz_A          128 KIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIPLLINLLKDPNGDVRNWAAFAININ  186 (280)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence            345555555666666666666666655542        12456666666666666666666666554

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.00  E-value=2.3e-05  Score=68.50  Aligned_cols=87  Identities=20%  Similarity=0.180  Sum_probs=71.8

Q ss_pred             HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCc-------c--hhhhhhHHHHHHhc--CCCChHHHHHHHHhHHH
Q psy13759         13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGK-------H--NTVDHLLPLFLSQL--KDECPEVRLNIISNLDC   81 (114)
Q Consensus        13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~-------e--~~~~~llP~~~~LL--~D~e~EVR~~a~~~l~~   81 (114)
                      ....++|.+....+|++|+||..+...+.++++.+|.       +  ...+.++|.+++.+  .|.+++||.+++..+..
T Consensus       516 ~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~  595 (1230)
T 1u6g_C          516 HVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQ  595 (1230)
T ss_dssp             HHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence            4567999999999999999999999999999988887       2  23468999999999  88999999999999999


Q ss_pred             HHhhhChhh--HhhhHhHHH
Q psy13759         82 VNEVIGIQQ--DVSFKLGQV   99 (114)
Q Consensus        82 ~~~~l~~~~--i~~~iLP~i   99 (114)
                      ++...|...  ....++|.+
T Consensus       596 L~~~~g~~~~~~~~~~l~~L  615 (1230)
T 1u6g_C          596 IICNLGDNLGSDLPNTLQIF  615 (1230)
T ss_dssp             HHHHTGGGCCTHHHHHHHHH
T ss_pred             HHHHhCchhhhhHHHHHHHH
Confidence            999988652  224445544

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=97.93  E-value=4.1e-05  Score=56.16  Aligned_cols=62  Identities=26%  Similarity=0.268  Sum_probs=53.4

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759         16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN   83 (114)
Q Consensus        16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~   83 (114)
                      ..+|.+..+++|+++.||..++..++.++.      .....+|.+..+++|++++||..++..+..++
T Consensus       159 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~  220 (280)
T 1oyz_A          159 ATIPLLINLLKDPNGDVRNWAAFAININKY------DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK  220 (280)
T ss_dssp             CCHHHHHHHHTCSSHHHHHHHHHHHHHHTC------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhhcc------CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence            378888899999999999999999988742      12467899999999999999999999998775

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=97.92  E-value=2.6e-05  Score=59.96  Aligned_cols=87  Identities=10%  Similarity=0.053  Sum_probs=67.2

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHccccccC---cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhh--
Q psy13759         16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILG---KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ--   90 (114)
Q Consensus        16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg---~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~--   90 (114)
                      .++|.+..+++|++|+||..++..++.++..-.   .......++|.++++++|++++||..++..+..++...+++.  
T Consensus       276 ~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~  355 (450)
T 2jdq_A          276 SALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIK  355 (450)
T ss_dssp             THHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred             ccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence            589999999999999999999999999985221   112235799999999999999999999999999987544432  


Q ss_pred             --HhhhHhHHHHHH
Q psy13759         91 --DVSFKLGQVDRT  102 (114)
Q Consensus        91 --i~~~iLP~i~~l  102 (114)
                        +...++|.+.++
T Consensus       356 ~l~~~~~i~~L~~l  369 (450)
T 2jdq_A          356 YLVELGCIKPLCDL  369 (450)
T ss_dssp             HHHHHTCHHHHHHG
T ss_pred             HHHHCCCHHHHHHH
Confidence              223455655444

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=97.85  E-value=8.5e-05  Score=53.16  Aligned_cols=70  Identities=10%  Similarity=0.115  Sum_probs=60.3

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHccccccCc---chhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759         16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILGK---HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV   85 (114)
Q Consensus        16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~---e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~   85 (114)
                      ..+|.+..++++.++.||..++..+..++..-..   .......+|.++++++|++++||..++..+..++..
T Consensus        96 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~  168 (252)
T 4db8_A           96 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG  168 (252)
T ss_dssp             THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence            3899999999999999999999999999854432   233346999999999999999999999999999863

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=97.83  E-value=0.00011  Score=51.93  Aligned_cols=70  Identities=11%  Similarity=0.117  Sum_probs=59.5

Q ss_pred             HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccC---cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759         15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILG---KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE   84 (114)
Q Consensus        15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg---~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~   84 (114)
                      ..++|.+..++++.++.||..++..+..++..-.   ........+|.++++++|++++||..++..+..++.
T Consensus        43 ~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~  115 (252)
T 4hxt_A           43 AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS  115 (252)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            3589999999999999999999999999985311   223334689999999999999999999999999985

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=97.82  E-value=6.7e-05  Score=52.40  Aligned_cols=74  Identities=8%  Similarity=0.078  Sum_probs=57.5

Q ss_pred             hHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccC---cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759         11 GNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILG---KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE   84 (114)
Q Consensus        11 ~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg---~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~   84 (114)
                      .......-|.+..+.+++++.||..++..+..++..-.   ........+|.++++|++++++||..++..+..++.
T Consensus         7 ~~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~   83 (210)
T 4db6_A            7 HHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS   83 (210)
T ss_dssp             ------CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             cccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence            33445577888999999999999999999999984322   122334689999999999999999999999999874

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.82  E-value=5.1e-05  Score=58.11  Aligned_cols=81  Identities=19%  Similarity=0.009  Sum_probs=66.8

Q ss_pred             hhccCChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhH---HHHHHhcCCCChHHHHHHHHhHH
Q psy13759          4 LLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLL---PLFLSQLKDECPEVRLNIISNLD   80 (114)
Q Consensus         4 l~~~~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~ll---P~~~~LL~D~e~EVR~~a~~~l~   80 (114)
                      +..+.||+.    +.+.+....+.+|||+|..+.+.+..+-+..|..  ....+   |.+.+++.|.+.+||.+|++.+.
T Consensus       159 l~~v~~~~~----v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~--~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lv  232 (266)
T 2of3_A          159 LSDVVGPLK----MTPMLLDALKSKNARQRSECLLVIEYYITNAGIS--PLKSLSVEKTVAPFVGDKDVNVRNAAINVLV  232 (266)
T ss_dssp             HHHHHCHHH----HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG--GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHH
T ss_pred             HHHHCCHHH----HHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC--ccccccchHHHHHHHcCCCHHHHHHHHHHHH
Confidence            344445444    4555555678899999999999999999999987  34578   99999999999999999999999


Q ss_pred             HHHhhhChhh
Q psy13759         81 CVNEVIGIQQ   90 (114)
Q Consensus        81 ~~~~~l~~~~   90 (114)
                      .+-..+|...
T Consensus       233 e~y~~~Gd~v  242 (266)
T 2of3_A          233 ACFKFEGDQM  242 (266)
T ss_dssp             HHHHHHTTHH
T ss_pred             HHHHHhhHHH
Confidence            9999999864

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=97.79  E-value=0.00017  Score=50.36  Aligned_cols=71  Identities=10%  Similarity=0.119  Sum_probs=60.3

Q ss_pred             HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCc---chhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759         15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILGK---HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV   85 (114)
Q Consensus        15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~---e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~   85 (114)
                      ...+|.+..++++.+++||..++..+..++..-..   .......+|.+++++++++++||..++..+..++..
T Consensus        95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  168 (210)
T 4db6_A           95 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG  168 (210)
T ss_dssp             TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            34789999999999999999999999999953221   223357899999999999999999999999999874

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=97.74  E-value=0.00016  Score=51.64  Aligned_cols=73  Identities=10%  Similarity=0.083  Sum_probs=60.5

Q ss_pred             HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccC---cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhh
Q psy13759         14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILG---KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVI   86 (114)
Q Consensus        14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg---~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l   86 (114)
                      ...++|.+..++++.++.||..++..+..++..-.   ........+|.+++++++++++||..++..+..++..-
T Consensus        52 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  127 (252)
T 4db8_A           52 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG  127 (252)
T ss_dssp             HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Confidence            34588999999999999999999999999985322   22223468999999999999999999999999987643

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=97.74  E-value=0.00019  Score=58.93  Aligned_cols=85  Identities=16%  Similarity=0.124  Sum_probs=65.4

Q ss_pred             HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHh
Q psy13759         13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDV   92 (114)
Q Consensus        13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~   92 (114)
                      ..-.+++.+++.++|+++.||..+...++.+.    .......++|.+.++++|+++.||..|+..+.++++ .+++.+.
T Consensus        83 ~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~----~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~-~~p~~~~  157 (591)
T 2vgl_B           83 MAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR----VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHD-INAQMVE  157 (591)
T ss_dssp             HHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC----SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHH-SSCCCHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC----hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHh-hChhhcc
Confidence            34446788888899999999999988887775    333456789999999999999999999999999998 4455443


Q ss_pred             h-hHhHHHHHH
Q psy13759         93 S-FKLGQVDRT  102 (114)
Q Consensus        93 ~-~iLP~i~~l  102 (114)
                      . .++|.+.++
T Consensus       158 ~~~~~~~l~~l  168 (591)
T 2vgl_B          158 DQGFLDSLRDL  168 (591)
T ss_dssp             HHHHHHHHHHT
T ss_pred             cccHHHHHHHH
Confidence            2 455655543

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=97.72  E-value=0.00021  Score=50.52  Aligned_cols=70  Identities=11%  Similarity=0.097  Sum_probs=59.5

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHccccccC---cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759         16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILG---KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV   85 (114)
Q Consensus        16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg---~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~   85 (114)
                      .++|.+..+++|.++.||..++..+..++..-+   ........+|.++++++|++++||..++..+..++..
T Consensus        86 ~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~  158 (252)
T 4hxt_A           86 GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG  158 (252)
T ss_dssp             THHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            479999999999999999999999999995322   2223346899999999999999999999999999864

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=97.70  E-value=8.1e-05  Score=61.65  Aligned_cols=80  Identities=14%  Similarity=0.105  Sum_probs=65.7

Q ss_pred             chhccCChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHH
Q psy13759          3 LLLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV   82 (114)
Q Consensus         3 ~l~~~~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~   82 (114)
                      .||.+-++ +....++|.+..+++|+++.||.+++..+..+...-+ +. .+.++|.+..+++|.++.|+.+++..+..+
T Consensus       130 ~L~~i~~~-~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p-~~-v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i  206 (618)
T 1w63_A          130 TLGCMGSS-EMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP-EL-MEMFLPATKNLLNEKNHGVLHTSVVLLTEM  206 (618)
T ss_dssp             HHHHHCCH-HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG-GG-GGGGGGGTTTSTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHhcCCH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh-HH-HHHHHHHHHHHhCCCCHhHHHHHHHHHHHH
Confidence            45555554 4567789999999999999999999999999987543 32 347899999999999999999999999998


Q ss_pred             Hhh
Q psy13759         83 NEV   85 (114)
Q Consensus        83 ~~~   85 (114)
                      ++.
T Consensus       207 ~~~  209 (618)
T 1w63_A          207 CER  209 (618)
T ss_dssp             CCS
T ss_pred             HHh
Confidence            764

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=97.67  E-value=0.00017  Score=55.38  Aligned_cols=70  Identities=14%  Similarity=0.169  Sum_probs=58.9

Q ss_pred             hhHHHHHHhcCCC-CHHHHHHHHHHHHccccccC---cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759         16 KSIKRTQDLVADP-NQHVKSALASVIMGLSPILG---KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV   85 (114)
Q Consensus        16 ~ilP~l~~L~~D~-s~~VR~~~a~~l~~la~~lg---~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~   85 (114)
                      .++|.+..++++. ++.||..++..+..++..-.   +.......+|.++++++|++++||..++..+..++..
T Consensus        64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~  137 (450)
T 2jdq_A           64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGD  137 (450)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccC
Confidence            6899998888887 89999999999999986322   2223357999999999999999999999999998864

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.66  E-value=0.00012  Score=60.91  Aligned_cols=81  Identities=12%  Similarity=0.089  Sum_probs=67.3

Q ss_pred             hhccCChhHHHHhhHHHHHHhc--CCCCHHHHHHHHHHHHccccccCcchhh-hhhHHHHHHhcCCCChHHHHHHHHhHH
Q psy13759          4 LLTINSDGNFVSKSIKRTQDLV--ADPNQHVKSALASVIMGLSPILGKHNTV-DHLLPLFLSQLKDECPEVRLNIISNLD   80 (114)
Q Consensus         4 l~~~~~~~~~~~~ilP~l~~L~--~D~s~~VR~~~a~~l~~la~~lg~e~~~-~~llP~~~~LL~D~e~EVR~~a~~~l~   80 (114)
                      +|.+..+ ++...++|.+.+++  .|+++.||..++-.+..+.+.. ++... ..+.+.+.++|+|.++.|+.+++..+.
T Consensus       135 L~~i~~~-e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~  212 (621)
T 2vgl_A          135 IANVGSR-EMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS-PDLVPMGDWTSRVVHLLNDQHLGVVTAATSLIT  212 (621)
T ss_dssp             HHHHCCH-HHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC-GGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             hhccCCH-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC-hhhcCchhHHHHHHHHhCCCCccHHHHHHHHHH
Confidence            4555444 46778999999999  9999999999999999999844 44443 489999999999999999999999999


Q ss_pred             HHHhhh
Q psy13759         81 CVNEVI   86 (114)
Q Consensus        81 ~~~~~l   86 (114)
                      .+++.=
T Consensus       213 ~i~~~~  218 (621)
T 2vgl_A          213 TLAQKN  218 (621)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            988753

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=97.59  E-value=0.00022  Score=59.90  Aligned_cols=89  Identities=13%  Similarity=0.066  Sum_probs=65.1

Q ss_pred             HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccC--cchhhhhh-HHHHHHhcCCCChHHHHHHHHhHHHHHhhhChh
Q psy13759         13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILG--KHNTVDHL-LPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ   89 (114)
Q Consensus        13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg--~e~~~~~l-lP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~   89 (114)
                      ..+.++|.++.| +.+++.+|.++|..+.+|++--.  +-...+.+ .|++..+|.|++.+||.++++.+..++..-|.+
T Consensus        32 ~~~~i~Pll~~L-~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d  110 (684)
T 4gmo_A           32 REDKILPVLKDL-KSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD  110 (684)
T ss_dssp             HHHTTHHHHHHH-SSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred             chhhHHHHHHHc-CCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence            345699999874 67899999999999999995211  11222344 456788999999999999999999999887766


Q ss_pred             hH----hhhHhHHHHHH
Q psy13759         90 QD----VSFKLGQVDRT  102 (114)
Q Consensus        90 ~i----~~~iLP~i~~l  102 (114)
                      ..    ...++|.+..+
T Consensus       111 ~~~~l~~~~il~~L~~~  127 (684)
T 4gmo_A          111 FCVHLYRLDVLTAIEHA  127 (684)
T ss_dssp             HHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHcChHHHHHHH
Confidence            42    22355555433

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=97.57  E-value=0.00015  Score=54.96  Aligned_cols=71  Identities=10%  Similarity=0.039  Sum_probs=60.9

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759         17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG   87 (114)
Q Consensus        17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~   87 (114)
                      .+|.+...++|++.+||..+++....-|.........+.++|++..|..|++.-||++++..|-.+++.=+
T Consensus       140 ~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P  210 (240)
T 3l9t_A          140 ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP  210 (240)
T ss_dssp             THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence            68899999999999999999999877665433344456799999999999999999999999999988743

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=97.56  E-value=0.00015  Score=57.97  Aligned_cols=73  Identities=16%  Similarity=0.165  Sum_probs=61.0

Q ss_pred             HHHhhHHHHHHhcCCC-CHHHHHHHHHHHHccccccC---cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759         13 FVSKSIKRTQDLVADP-NQHVKSALASVIMGLSPILG---KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV   85 (114)
Q Consensus        13 ~~~~ilP~l~~L~~D~-s~~VR~~~a~~l~~la~~lg---~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~   85 (114)
                      ....++|.+..++++. ++.||..++..+..++..-.   ........+|.++++|++++++||..++..+..++..
T Consensus       127 ~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~  203 (530)
T 1wa5_B          127 IQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGD  203 (530)
T ss_dssp             HHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTT
T ss_pred             HHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence            3456899999999987 99999999999999996322   2233357899999999999999999999999999864

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.56  E-value=0.00012  Score=54.55  Aligned_cols=73  Identities=16%  Similarity=0.129  Sum_probs=58.5

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhh-----hhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChh
Q psy13759         17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTV-----DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ   89 (114)
Q Consensus        17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~-----~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~   89 (114)
                      ++..+....+.++|+||.+....+..+-+.+|.....     ..+++.+..++.|.+++||.++.+-+..+-.++|+.
T Consensus       140 ~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~  217 (278)
T 4ffb_C          140 SVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN  217 (278)
T ss_dssp             HHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence            4556666788999999999999999998888865432     346777888999999999999999999999999964

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=97.51  E-value=0.00026  Score=56.52  Aligned_cols=74  Identities=9%  Similarity=0.042  Sum_probs=61.9

Q ss_pred             HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCc---chhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhCh
Q psy13759         15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILGK---HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGI   88 (114)
Q Consensus        15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~---e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~   88 (114)
                      ..++|.+..++++.+|.||..++..+..++..-..   ......++|.++++|+|.+++||..++..+..++..-++
T Consensus       340 ~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~  416 (530)
T 1wa5_B          340 AGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQ  416 (530)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTT
T ss_pred             cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC
Confidence            45899999999999999999999999999863221   122357899999999999999999999999999876544

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=97.47  E-value=4.7e-05  Score=57.35  Aligned_cols=47  Identities=23%  Similarity=0.234  Sum_probs=34.8

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHH
Q psy13759         19 KRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLD   80 (114)
Q Consensus        19 P~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~   80 (114)
                      +.+..+++|++|+||.+++..+       +        .+.+..|++|++++||.+++.++.
T Consensus       173 ~ll~~ll~D~d~~VR~aaa~~l-------~--------~~~L~~Ll~D~d~~VR~~aa~~l~  219 (244)
T 1lrv_A          173 ESLGLMTQDPEPEVRRIVASRL-------R--------GDDLLELLHDPDWTVRLAAVEHAS  219 (244)
T ss_dssp             GGGGGSTTCSSHHHHHHHHHHC-------C--------GGGGGGGGGCSSHHHHHHHHHHSC
T ss_pred             HHHHHHHcCCCHHHHHHHHHhC-------C--------HHHHHHHHcCCCHHHHHHHHHcCC
Confidence            3455678888888888888763       1        145777788888888888888876

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.43  E-value=0.00027  Score=62.54  Aligned_cols=95  Identities=8%  Similarity=0.114  Sum_probs=76.4

Q ss_pred             chhccCChhHHHHhhHHHHHHhcCCC-CHHHHHHHHHHHHccccccCcchhh--hhhHHHHHHhcCCCChHHHHHHHHhH
Q psy13759          3 LLLTINSDGNFVSKSIKRTQDLVADP-NQHVKSALASVIMGLSPILGKHNTV--DHLLPLFLSQLKDECPEVRLNIISNL   79 (114)
Q Consensus         3 ~l~~~~~~~~~~~~ilP~l~~L~~D~-s~~VR~~~a~~l~~la~~lg~e~~~--~~llP~~~~LL~D~e~EVR~~a~~~l   79 (114)
                      .+.+.++|+.. .-++|.+..-.+.. .|+.+.++-..+..+++..+.....  -+++|.+...+.|.-+||..++...+
T Consensus       121 ~~~~~~~~~a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~  199 (986)
T 2iw3_A          121 SIVNAVNPVAI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAM  199 (986)
T ss_dssp             HHHHHSCGGGH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             HHHHhCCHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHH
Confidence            45667788886 77888886655544 6999999999999999776544443  48999999999999999999999999


Q ss_pred             HHHHhhhChhhHhhhHhHHH
Q psy13759         80 DCVNEVIGIQQDVSFKLGQV   99 (114)
Q Consensus        80 ~~~~~~l~~~~i~~~iLP~i   99 (114)
                      .++|..++-..+ +.++|.+
T Consensus       200 ~~~~~~~~n~d~-~~~~~~~  218 (986)
T 2iw3_A          200 TKATETVDNKDI-ERFIPSL  218 (986)
T ss_dssp             HHHGGGCCCTTT-GGGHHHH
T ss_pred             HHHHhcCCCcch-hhhHHHH
Confidence            999999987665 3444554

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=97.43  E-value=0.00079  Score=57.89  Aligned_cols=67  Identities=10%  Similarity=0.081  Sum_probs=56.3

Q ss_pred             HhhHHHHHHhcCCC---CHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhh
Q psy13759         15 SKSIKRTQDLVADP---NQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVI   86 (114)
Q Consensus        15 ~~ilP~l~~L~~D~---s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l   86 (114)
                      +.++|.+    +|+   ++.||+.++..++.+++.+.++ .-..++|.+++.+.|+++.||.+|+..+..|++..
T Consensus       458 ~~v~p~l----~~~~~~~p~vr~~a~~~lg~~~~~~~~~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~  527 (960)
T 1wa5_C          458 KEIAPDL----TSNNIPHIILRVDAIKYIYTFRNQLTKA-QLIELMPILATFLQTDEYVVYTYAAITIEKILTIR  527 (960)
T ss_dssp             HHTHHHH----HCSSCSCHHHHHHHHHHHHHTGGGSCHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCB
T ss_pred             HHhHHHh----cCCCCCCceehHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcc
Confidence            3455544    455   9999999999999999988654 45678999999999999999999999999999854

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=97.38  E-value=0.00054  Score=56.69  Aligned_cols=83  Identities=10%  Similarity=-0.063  Sum_probs=65.7

Q ss_pred             HHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhH
Q psy13759         12 NFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQD   91 (114)
Q Consensus        12 ~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i   91 (114)
                      +..-.++..+++-++|+++.||..+...++.++.    ......++|.+.++++|+.+.||.+|+..+.++... .|+.+
T Consensus       103 e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~----~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~-~p~~v  177 (618)
T 1w63_A          103 DVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS----SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRK-VPELM  177 (618)
T ss_dssp             HHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH-CGGGG
T ss_pred             HHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-ChHHH
Confidence            3445577888888999999999999999999872    234568899999999999999999999999999874 34433


Q ss_pred             hhhHhHHHH
Q psy13759         92 VSFKLGQVD  100 (114)
Q Consensus        92 ~~~iLP~i~  100 (114)
                       +.++|.+.
T Consensus       178 -~~~~~~l~  185 (618)
T 1w63_A          178 -EMFLPATK  185 (618)
T ss_dssp             -GGGGGGTT
T ss_pred             -HHHHHHHH
Confidence             34554443

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=97.36  E-value=5.1e-05  Score=57.17  Aligned_cols=46  Identities=24%  Similarity=0.280  Sum_probs=35.1

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHH
Q psy13759         20 RTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLD   80 (114)
Q Consensus        20 ~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~   80 (114)
                      .+..+.+|++|.||.+++.++       +.        +.+..+++|++++||.+++.++.
T Consensus       150 ~l~~l~~D~d~~VR~~aa~~l-------~~--------~ll~~ll~D~d~~VR~aaa~~l~  195 (244)
T 1lrv_A          150 RLFRFMRDEDRQVRKLVAKRL-------PE--------ESLGLMTQDPEPEVRRIVASRLR  195 (244)
T ss_dssp             GGGGTTTCSCHHHHHHHHHHS-------CG--------GGGGGSTTCSSHHHHHHHHHHCC
T ss_pred             HHHHHHcCCCHHHHHHHHHcC-------CH--------HHHHHHHcCCCHHHHHHHHHhCC
Confidence            456788899999998888862       21        45567888999999988888775

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=97.35  E-value=0.00098  Score=52.20  Aligned_cols=71  Identities=15%  Similarity=0.107  Sum_probs=63.1

Q ss_pred             HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759         15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV   85 (114)
Q Consensus        15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~   85 (114)
                      ...+|.+..+++|.+.+||..++..+..++...+.......++|.+++++++++++||..++..+..++..
T Consensus       226 ~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~  296 (529)
T 1jdh_A          226 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN  296 (529)
T ss_dssp             TTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred             CCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence            35789999999999999999999999999977766666678999999999999999999999999988763

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=97.26  E-value=0.001  Score=52.80  Aligned_cols=73  Identities=15%  Similarity=0.165  Sum_probs=59.2

Q ss_pred             HHHhhHHHHHHhcCCCC-HHHHHHHHHHHHccccccC---cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759         13 FVSKSIKRTQDLVADPN-QHVKSALASVIMGLSPILG---KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV   85 (114)
Q Consensus        13 ~~~~ilP~l~~L~~D~s-~~VR~~~a~~l~~la~~lg---~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~   85 (114)
                      +...++|.+..++++.+ +.||..++..+..++..-.   ........+|.++++|+|++++||..++..+..++..
T Consensus       114 ~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~  190 (528)
T 4b8j_A          114 IQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGD  190 (528)
T ss_dssp             HHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHT
T ss_pred             HHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC
Confidence            34458999988888876 9999999999999996311   1222236899999999999999999999999999853

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=97.25  E-value=0.0013  Score=52.20  Aligned_cols=73  Identities=11%  Similarity=0.103  Sum_probs=61.6

Q ss_pred             HHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCc---chhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759         12 NFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGK---HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE   84 (114)
Q Consensus        12 ~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~---e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~   84 (114)
                      .....++|.+..++.+.++.||..++..+..++..-+.   ......++|.++++|++++++||..++..+..++.
T Consensus       240 ~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~  315 (528)
T 4b8j_A          240 EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVT  315 (528)
T ss_dssp             HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHc
Confidence            44566999999999999999999999999999954332   12234689999999999999999999999999886

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=97.06  E-value=0.0018  Score=49.53  Aligned_cols=70  Identities=16%  Similarity=0.176  Sum_probs=57.1

Q ss_pred             hhHHHHHH-hcCCCCHHHHHHHHHHHHccccccC---cchhhhhhHHHHHHhcC-CCChHHHHHHHHhHHHHHhh
Q psy13759         16 KSIKRTQD-LVADPNQHVKSALASVIMGLSPILG---KHNTVDHLLPLFLSQLK-DECPEVRLNIISNLDCVNEV   85 (114)
Q Consensus        16 ~ilP~l~~-L~~D~s~~VR~~~a~~l~~la~~lg---~e~~~~~llP~~~~LL~-D~e~EVR~~a~~~l~~~~~~   85 (114)
                      ..+|.+-. ++++++..||..+|..++.++..-+   ........+|.+++||+ |+..+||..++..+..++..
T Consensus        81 G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~  155 (296)
T 1xqr_A           81 SGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVRE  155 (296)
T ss_dssp             THHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC
Confidence            36787777 9999999999999999999985322   22333478999999999 56899999999999999854

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=96.99  E-value=0.0042  Score=50.98  Aligned_cols=70  Identities=16%  Similarity=0.103  Sum_probs=62.4

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759         16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV   85 (114)
Q Consensus        16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~   85 (114)
                      .++|.+..++++.+.++|..++..+..++..-++......++|.+++++++++++||..++..+..++..
T Consensus       224 g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~  293 (644)
T 2z6h_A          224 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN  293 (644)
T ss_dssp             THHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            4789999999999999999999999999977666666678999999999999999999999999888763

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=96.91  E-value=0.0049  Score=48.71  Aligned_cols=94  Identities=13%  Similarity=0.039  Sum_probs=72.9

Q ss_pred             chhccCChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHH
Q psy13759          3 LLLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV   82 (114)
Q Consensus         3 ~l~~~~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~   82 (114)
                      .||++.+++ ....+.+.+++...|+++.||.+++-....+.+.- +|.. +.+++...+++.|.++-|-.+++.-+..+
T Consensus       127 tL~~I~~~~-m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~-pe~v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei  203 (355)
T 3tjz_B          127 ALCQITDST-MLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCS-FDVV-KRWVNEAQEAASSDNIMVQYHALGLLYHV  203 (355)
T ss_dssp             HHHHHCCTT-THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC-HHHH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             HHhcCCCHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC-HHHH-HHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence            456666665 46779999999999999999999999988887654 3333 57999999999999999999999999988


Q ss_pred             HhhhChhhHhhhHhHHHHH
Q psy13759         83 NEVIGIQQDVSFKLGQVDR  101 (114)
Q Consensus        83 ~~~l~~~~i~~~iLP~i~~  101 (114)
                      ++. +. ....++++.+.+
T Consensus       204 ~~~-d~-~a~~kLv~~l~~  220 (355)
T 3tjz_B          204 RKN-DR-LAVSKMISKFTR  220 (355)
T ss_dssp             HTT-CH-HHHHHHHHHHHS
T ss_pred             Hhh-ch-HHHHHHHHHHhc
Confidence            864 22 233556665543

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=96.80  E-value=0.0055  Score=52.03  Aligned_cols=71  Identities=15%  Similarity=0.107  Sum_probs=62.8

Q ss_pred             HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759         15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV   85 (114)
Q Consensus        15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~   85 (114)
                      ..++|.+..++++.+..+|..++..+..++...++......++|.+++++++++++||..++..+..++..
T Consensus       359 ~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~  429 (780)
T 2z6g_A          359 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN  429 (780)
T ss_dssp             TTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred             hchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence            34789999999999999999999999999977766666678999999999999999999999999888763

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=96.75  E-value=0.0078  Score=48.31  Aligned_cols=72  Identities=11%  Similarity=0.105  Sum_probs=57.4

Q ss_pred             HHHhhHHHHHHhcC-CCCHHHHHHHHHHHHccccccC---cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759         13 FVSKSIKRTQDLVA-DPNQHVKSALASVIMGLSPILG---KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE   84 (114)
Q Consensus        13 ~~~~ilP~l~~L~~-D~s~~VR~~~a~~l~~la~~lg---~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~   84 (114)
                      +..-++|.+-++++ +.++.|+..+|..+..||..-.   +.......+|.++++|++++.+||..++..|.+++.
T Consensus        97 i~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~  172 (510)
T 3ul1_B           97 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG  172 (510)
T ss_dssp             HHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence            44448998888775 5678999999999999984322   122334689999999999999999999999998874

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=96.73  E-value=0.0033  Score=50.57  Aligned_cols=75  Identities=7%  Similarity=0.098  Sum_probs=61.1

Q ss_pred             HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccC---cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChh
Q psy13759         15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILG---KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ   89 (114)
Q Consensus        15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg---~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~   89 (114)
                      ..++|.+..++++++..||..+|..+..++..-.   .......++|.++.++++.+.+||..|+..+..++..-.++
T Consensus       334 ~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~  411 (529)
T 3tpo_A          334 AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVE  411 (529)
T ss_dssp             TTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred             cccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHH
Confidence            3478899999999999999999999999985322   12233479999999999999999999999999887654444

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=96.60  E-value=0.0083  Score=48.15  Aligned_cols=71  Identities=6%  Similarity=0.005  Sum_probs=59.3

Q ss_pred             HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcc----hhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759         15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKH----NTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV   85 (114)
Q Consensus        15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e----~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~   85 (114)
                      ..++|.+..++++.+++||..++..+..++..-..+    ......+|.+.+||+..+++++..++..+.++.+.
T Consensus       357 ~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~  431 (510)
T 3ul1_B          357 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA  431 (510)
T ss_dssp             TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            358899999999999999999999999998543333    23357899999999999999999999988877654

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=96.59  E-value=0.0028  Score=55.99  Aligned_cols=65  Identities=18%  Similarity=0.059  Sum_probs=53.2

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759         17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV   85 (114)
Q Consensus        17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~   85 (114)
                      +...+..+.++.+|+||+++|..++.++.--|.    ..++..+..|++|++.+||.+|+.++..++.-
T Consensus       613 v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~----~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g  677 (963)
T 4ady_A          613 VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL----QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQ  677 (963)
T ss_dssp             HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc----HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence            445556688899999999999999998855554    44667788889999999999999999988753

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=96.58  E-value=0.0045  Score=48.40  Aligned_cols=69  Identities=13%  Similarity=0.053  Sum_probs=55.6

Q ss_pred             HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccc--cCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHH
Q psy13759         14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPI--LGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV   82 (114)
Q Consensus        14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~--lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~   82 (114)
                      ...++|.+..++.|.++.||..++..+..++..  .-........++.+..|++|++++||..+...+..+
T Consensus       458 ~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l  528 (529)
T 1jdh_A          458 GLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             ccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence            344789999999999999999999999998732  112222346789999999999999999999888765

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=96.54  E-value=0.011  Score=45.20  Aligned_cols=70  Identities=9%  Similarity=0.026  Sum_probs=57.2

Q ss_pred             hhHHHHHHhcC-CCCHHHHHHHHHHHHccccccC--cc-hhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759         16 KSIKRTQDLVA-DPNQHVKSALASVIMGLSPILG--KH-NTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV   85 (114)
Q Consensus        16 ~ilP~l~~L~~-D~s~~VR~~~a~~l~~la~~lg--~e-~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~   85 (114)
                      ..+|.+-.+++ |++..||..++..+..++...+  .+ ......+|.++.+|++.+++||..++..+..++..
T Consensus       124 g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~  197 (296)
T 1xqr_A          124 GALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG  197 (296)
T ss_dssp             THHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence            47777777666 6789999999999999985433  22 23347899999999999999999999999998875

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=96.50  E-value=0.011  Score=51.38  Aligned_cols=75  Identities=8%  Similarity=0.026  Sum_probs=62.4

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHccccccC--cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhh
Q psy13759         16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILG--KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ   90 (114)
Q Consensus        16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg--~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~   90 (114)
                      ..+|.+..+++.+++.||..++..+..||..-.  ........+|.++.||++..+++|..|+..+.+++..-.++.
T Consensus       495 GaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~  571 (810)
T 3now_A          495 GITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEV  571 (810)
T ss_dssp             THHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhh
Confidence            489999999999999999999999999984211  223334689999999999999999999999999987766554

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=96.48  E-value=0.0091  Score=47.97  Aligned_cols=71  Identities=7%  Similarity=0.016  Sum_probs=59.2

Q ss_pred             HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcc----hhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759         15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKH----NTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV   85 (114)
Q Consensus        15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e----~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~   85 (114)
                      ..++|.+..++++.++.||..+|..+..++..-..+    ......+|.+++||+..+++++..++..|..+.+.
T Consensus       376 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~  450 (529)
T 3tpo_A          376 HGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA  450 (529)
T ss_dssp             TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            348999999999999999999999999988543333    23356899999999999999999999988887654

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=96.48  E-value=0.0076  Score=51.79  Aligned_cols=95  Identities=12%  Similarity=0.059  Sum_probs=63.4

Q ss_pred             hhccCChhHHHHhhHHHHHHhcC------CCCHHHHHHHHHHHHcccccc-Ccchhhh------hhHHH----HHHhcCC
Q psy13759          4 LLTINSDGNFVSKSIKRTQDLVA------DPNQHVKSALASVIMGLSPIL-GKHNTVD------HLLPL----FLSQLKD   66 (114)
Q Consensus         4 l~~~~~~~~~~~~ilP~l~~L~~------D~s~~VR~~~a~~l~~la~~l-g~e~~~~------~llP~----~~~LL~D   66 (114)
                      |++.++ +.+...++|.+....+      +.+|+.|.++--.++.+++.. |.+....      .+.|.    +...++|
T Consensus       388 l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~  466 (960)
T 1wa5_C          388 LKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTS  466 (960)
T ss_dssp             HHHHCH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHC
T ss_pred             HHHHcc-hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcC
Confidence            444444 5566678888776655      788999999999999987542 2221111      34343    3444578


Q ss_pred             C---ChHHHHHHHHhHHHHHhhhChhhHhhhHhHHHH
Q psy13759         67 E---CPEVRLNIISNLDCVNEVIGIQQDVSFKLGQVD  100 (114)
Q Consensus        67 ~---e~EVR~~a~~~l~~~~~~l~~~~i~~~iLP~i~  100 (114)
                      +   .+-||..++..+..+++++.++. ...++|.+.
T Consensus       467 ~~~~~p~vr~~a~~~lg~~~~~~~~~~-l~~~l~~l~  502 (960)
T 1wa5_C          467 NNIPHIILRVDAIKYIYTFRNQLTKAQ-LIELMPILA  502 (960)
T ss_dssp             SSCSCHHHHHHHHHHHHHTGGGSCHHH-HHHHHHHHH
T ss_pred             CCCCCceehHHHHHHHHHHHhhCCHHH-HHHHHHHHH
Confidence            7   99999999999999999997653 455666554

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=96.28  E-value=0.011  Score=46.19  Aligned_cols=72  Identities=6%  Similarity=-0.013  Sum_probs=60.2

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHccccc--cC-cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhCh
Q psy13759         17 SIKRTQDLVADPNQHVKSALASVIMGLSPI--LG-KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGI   88 (114)
Q Consensus        17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~--lg-~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~   88 (114)
                      .+|.+-.++++.+..||..++..+..++..  -. ........+|.+.+|+++...++|..++..+.+++..-+.
T Consensus       264 ~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~  338 (354)
T 3nmw_A          264 CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA  338 (354)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred             CHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence            789999999999999999999999999832  11 1233346899999999999999999999999999987443

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=96.26  E-value=0.02  Score=46.86  Aligned_cols=73  Identities=14%  Similarity=0.056  Sum_probs=59.2

Q ss_pred             HhhHHHHHHhcCCCCHHHHHHHHHHHHccccc--cCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759         15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPI--LGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG   87 (114)
Q Consensus        15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~--lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~   87 (114)
                      ...+|.+..++.|.+..||..++..+..++..  .-........++.+.++++|++++||.+++..+..++..-+
T Consensus       456 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~  530 (644)
T 2z6h_A          456 LNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP  530 (644)
T ss_dssp             TTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSC
T ss_pred             CCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCc
Confidence            34789999999999999999999999988743  11112223578999999999999999999999999887554

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=96.24  E-value=0.0079  Score=51.05  Aligned_cols=73  Identities=14%  Similarity=0.056  Sum_probs=59.4

Q ss_pred             HhhHHHHHHhcCCCCHHHHHHHHHHHHccccc--cCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759         15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPI--LGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG   87 (114)
Q Consensus        15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~--lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~   87 (114)
                      ..++|.+..++.+.+..||..++..+..++..  .-........++.+.+|++|++++||..|+..+..++..-+
T Consensus       592 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~  666 (780)
T 2z6g_A          592 LNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP  666 (780)
T ss_dssp             TCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred             CCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence            44789999999999999999999999988732  11112223578999999999999999999999999987554

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=96.21  E-value=0.031  Score=46.42  Aligned_cols=91  Identities=14%  Similarity=0.166  Sum_probs=68.3

Q ss_pred             hhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcC-CCChHHHHHHHHhHHHHHhhhCh
Q psy13759         10 DGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLK-DECPEVRLNIISNLDCVNEVIGI   88 (114)
Q Consensus        10 ~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~-D~e~EVR~~a~~~l~~~~~~l~~   88 (114)
                      ...........+..++.++...+||.+-..+..++..-+.........+.|+..++ |++..||..++.-+..++.-=..
T Consensus       323 ~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv  402 (621)
T 2vgl_A          323 EPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNA  402 (621)
T ss_dssp             CHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHH
T ss_pred             cHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhH
Confidence            34556667777888888899999999999999999776533344566788888888 99999999999888877765444


Q ss_pred             hhHhhhHhHHHH
Q psy13759         89 QQDVSFKLGQVD  100 (114)
Q Consensus        89 ~~i~~~iLP~i~  100 (114)
                      +.+.+.++-++.
T Consensus       403 ~~Iv~eL~~yl~  414 (621)
T 2vgl_A          403 QQIVAEMLSYLE  414 (621)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            555555555543

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=96.19  E-value=0.016  Score=49.44  Aligned_cols=89  Identities=6%  Similarity=0.021  Sum_probs=61.2

Q ss_pred             hHHHHhhHHHHHHhcCC-----CCHHHHHHHHHHHHccccccCcch--hhhhhHHHHHHhc-CCCChHHHHHHHHhHHHH
Q psy13759         11 GNFVSKSIKRTQDLVAD-----PNQHVKSALASVIMGLSPILGKHN--TVDHLLPLFLSQL-KDECPEVRLNIISNLDCV   82 (114)
Q Consensus        11 ~~~~~~ilP~l~~L~~D-----~s~~VR~~~a~~l~~la~~lg~e~--~~~~llP~~~~LL-~D~e~EVR~~a~~~l~~~   82 (114)
                      +.+...+++.+....+.     .+|+.|.++.-.++.+++...++.  ....+++.+.++. +|..+.||..++..+..+
T Consensus       454 ~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~  533 (971)
T 2x1g_F          454 DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSY  533 (971)
T ss_dssp             THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHH
Confidence            55667777777665543     799999999999999998877644  2245666666665 378999999999999999


Q ss_pred             HhhhChh-hHhhhHhHHH
Q psy13759         83 NEVIGIQ-QDVSFKLGQV   99 (114)
Q Consensus        83 ~~~l~~~-~i~~~iLP~i   99 (114)
                      +++++.. .....++|.+
T Consensus       534 ~~~l~~~~~~l~~vl~~l  551 (971)
T 2x1g_F          534 CNWLMENPAYIPPAINLL  551 (971)
T ss_dssp             HHHHC----CHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHH
Confidence            9999743 2334444544

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=96.18  E-value=0.028  Score=42.57  Aligned_cols=69  Identities=14%  Similarity=0.293  Sum_probs=57.3

Q ss_pred             HHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHH
Q psy13759         12 NFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV   82 (114)
Q Consensus        12 ~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~   82 (114)
                      .+..+++|.+-.+..|++..||.-+++.+.+.|..  +.......++.+..|++|+++.|-+.++.....+
T Consensus        49 ~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~i  117 (257)
T 3gs3_A           49 ELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQVIKRVIQACGSI  117 (257)
T ss_dssp             GGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            37788999998899999999999999999999833  3344457899999999999999988888766543

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=95.99  E-value=0.028  Score=44.51  Aligned_cols=68  Identities=10%  Similarity=-0.040  Sum_probs=55.8

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHccccccC--c-chhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759         18 IKRTQDLVADPNQHVKSALASVIMGLSPILG--K-HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV   85 (114)
Q Consensus        18 lP~l~~L~~D~s~~VR~~~a~~l~~la~~lg--~-e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~   85 (114)
                      +|.+-.+++..++.+|..++..+..++..-.  + .......+|.++++|+.++++++..++..+..++..
T Consensus         4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~   74 (457)
T 1xm9_A            4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR   74 (457)
T ss_dssp             HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence            5667667777789999999999999984322  2 334457899999999999999999999999999873

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=95.93  E-value=0.023  Score=48.25  Aligned_cols=73  Identities=23%  Similarity=0.314  Sum_probs=58.6

Q ss_pred             HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcc-hhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhCh
Q psy13759         13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKH-NTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGI   88 (114)
Q Consensus        13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e-~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~   88 (114)
                      ....+++.+..+.. .+++||..++..++.+++.++.+ .....++|.+++.++|  +.||.+|+..+..+++..+.
T Consensus       487 ~l~~l~~~l~~l~~-~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~  560 (963)
T 2x19_B          487 VVPGLIGLIPRISI-SNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKY  560 (963)
T ss_dssp             HHHHHHHHGGGSCC-CSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGG
T ss_pred             HHHHHHHHHHhCCC-CcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHH
Confidence            44557776655554 58999999999999999988754 3446789999999977  89999999999999986653

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=95.92  E-value=0.044  Score=43.39  Aligned_cols=90  Identities=18%  Similarity=0.119  Sum_probs=66.4

Q ss_pred             HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccc--cCc-chhhhhhHHHHHHhcC-CCChHHHHHHHHhHHHHHhhhC-h
Q psy13759         14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPI--LGK-HNTVDHLLPLFLSQLK-DECPEVRLNIISNLDCVNEVIG-I   88 (114)
Q Consensus        14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~--lg~-e~~~~~llP~~~~LL~-D~e~EVR~~a~~~l~~~~~~l~-~   88 (114)
                      ....+|.+-.++++.+..++..++..+..|+..  -.+ .......+|.++++|+ +.++++|..++..|..++..=. .
T Consensus        42 ~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~  121 (457)
T 1xm9_A           42 QLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK  121 (457)
T ss_dssp             HTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTH
T ss_pred             HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhH
Confidence            344899999999999999999999999999963  111 1223467999999999 7799999999999999997611 1


Q ss_pred             hhHhhhHhHHHHHHH
Q psy13759         89 QQDVSFKLGQVDRTS  103 (114)
Q Consensus        89 ~~i~~~iLP~i~~l~  103 (114)
                      +.+.+..+|.+-++-
T Consensus       122 ~~i~~g~i~~Lv~ll  136 (457)
T 1xm9_A          122 EELIADALPVLADRV  136 (457)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHhccHHHHHHHH
Confidence            123335566554443

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=95.81  E-value=0.024  Score=48.42  Aligned_cols=73  Identities=7%  Similarity=0.077  Sum_probs=57.0

Q ss_pred             HHHhhHHHHHHhc-CCCCHHHHHHHHHHHHccccccCcch-hhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhCh
Q psy13759         13 FVSKSIKRTQDLV-ADPNQHVKSALASVIMGLSPILGKHN-TVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGI   88 (114)
Q Consensus        13 ~~~~ilP~l~~L~-~D~s~~VR~~~a~~l~~la~~lg~e~-~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~   88 (114)
                      ....+++.+..+. .|.+++||..++..++.+++.++.+. ....++|.+++.+ |  +.|+.+|+..+..+++..+.
T Consensus       502 ~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~  576 (971)
T 2x1g_F          502 QIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQL  576 (971)
T ss_dssp             HHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHH
Confidence            3445666666666 37899999999999999999988543 3457888888888 5  89999999999999987654

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=95.78  E-value=0.037  Score=44.34  Aligned_cols=70  Identities=14%  Similarity=0.115  Sum_probs=57.8

Q ss_pred             HHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759         12 NFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN   83 (114)
Q Consensus        12 ~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~   83 (114)
                      ....+++|.+-.+..|++..||..+++.+.+.|..  +.......++.+..|++|+++.|-+.++.....+-
T Consensus        59 sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslY  128 (386)
T 3o2t_A           59 TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLKLIANLNMLLRDENVNVVKKAILTMTQLY  128 (386)
T ss_dssp             GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999853  22223678999999999999999888776655443

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=95.74  E-value=0.037  Score=46.90  Aligned_cols=88  Identities=11%  Similarity=0.075  Sum_probs=63.0

Q ss_pred             hHHHHhhHHHHHHhc----CCCCHHHHHHHHHHHHccccccCcch--hhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759         11 GNFVSKSIKRTQDLV----ADPNQHVKSALASVIMGLSPILGKHN--TVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE   84 (114)
Q Consensus        11 ~~~~~~ilP~l~~L~----~D~s~~VR~~~a~~l~~la~~lg~e~--~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~   84 (114)
                      +.....+++.+....    ++.+|+.|.++.-.++.+++.+..+.  ....+++.+.++.. +.+.||..++..+..+++
T Consensus       440 ~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~-~~~~vr~~~~~~l~~~~~  518 (963)
T 2x19_B          440 AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISI-SNVQLADTVMFTIGALSE  518 (963)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCC-CSHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCC-CcHHHHHHHHHHHHHHHH
Confidence            344556677776665    77899999999999999998877533  22356665555554 578899999999999999


Q ss_pred             hhChh-hHhhhHhHHH
Q psy13759         85 VIGIQ-QDVSFKLGQV   99 (114)
Q Consensus        85 ~l~~~-~i~~~iLP~i   99 (114)
                      +++.. .....++|.+
T Consensus       519 ~l~~~~~~l~~vl~~l  534 (963)
T 2x19_B          519 WLADHPVMINSVLPLV  534 (963)
T ss_dssp             HHHHCHHHHTTTHHHH
T ss_pred             HHHhCHHHHHHHHHHH
Confidence            98643 3334444443

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=95.68  E-value=0.018  Score=50.55  Aligned_cols=74  Identities=11%  Similarity=0.121  Sum_probs=59.1

Q ss_pred             hhHHHHHHhcC-----CCCHHHHHHHHHHHHccccccCcchh-hhhhHHHHHH--hcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759         16 KSIKRTQDLVA-----DPNQHVKSALASVIMGLSPILGKHNT-VDHLLPLFLS--QLKDECPEVRLNIISNLDCVNEVIG   87 (114)
Q Consensus        16 ~ilP~l~~L~~-----D~s~~VR~~~a~~l~~la~~lg~e~~-~~~llP~~~~--LL~D~e~EVR~~a~~~l~~~~~~l~   87 (114)
                      .+++.+..+.+     |+.++||+..++.++..++.+..+.. -..+++.|+.  -+.|+++.||.+|+..+..|++..+
T Consensus       490 ~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~  569 (980)
T 3ibv_A          490 VLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK  569 (980)
T ss_dssp             HHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence            46677777654     99999999999999999999976432 2345555666  6668899999999999999999887


Q ss_pred             hh
Q psy13759         88 IQ   89 (114)
Q Consensus        88 ~~   89 (114)
                      ..
T Consensus       570 ~~  571 (980)
T 3ibv_A          570 KQ  571 (980)
T ss_dssp             TT
T ss_pred             HH
Confidence            63

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=95.53  E-value=0.04  Score=47.82  Aligned_cols=77  Identities=17%  Similarity=0.144  Sum_probs=61.0

Q ss_pred             HHHhhHHHHHHhcC-----CCCHHHHHHHHHHHHccccccCcch-hhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhh
Q psy13759         13 FVSKSIKRTQDLVA-----DPNQHVKSALASVIMGLSPILGKHN-TVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVI   86 (114)
Q Consensus        13 ~~~~ilP~l~~L~~-----D~s~~VR~~~a~~l~~la~~lg~e~-~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l   86 (114)
                      +...+++.+..+..     |+.+.||..++..++..++.+..+. .-..+++.+++.+.|+++.||.+|+..+..+++..
T Consensus       492 ~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~  571 (1049)
T 3m1i_C          492 FVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKC  571 (1049)
T ss_dssp             HHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            35667777766553     5778888889999999988776542 33568888888999999999999999999999977


Q ss_pred             Chh
Q psy13759         87 GIQ   89 (114)
Q Consensus        87 ~~~   89 (114)
                      +..
T Consensus       572 ~~~  574 (1049)
T 3m1i_C          572 KYH  574 (1049)
T ss_dssp             THH
T ss_pred             HHH
Confidence            643

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=95.49  E-value=0.024  Score=50.09  Aligned_cols=80  Identities=13%  Similarity=0.022  Sum_probs=64.7

Q ss_pred             CChhHHHHhhHHHHHHhcCC--CCHHHHHHHHHHHHccccccCcch---hhhhhHHHHHHhcC-----CCChHHHHHHHH
Q psy13759          8 NSDGNFVSKSIKRTQDLVAD--PNQHVKSALASVIMGLSPILGKHN---TVDHLLPLFLSQLK-----DECPEVRLNIIS   77 (114)
Q Consensus         8 ~~~~~~~~~ilP~l~~L~~D--~s~~VR~~~a~~l~~la~~lg~e~---~~~~llP~~~~LL~-----D~e~EVR~~a~~   77 (114)
                      +.++.....++|.+.+...+  .+|+.|.+++-.++.|++.+.++.   ....++|.+++++.     |+.+-||..++.
T Consensus       443 l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~  522 (1023)
T 4hat_C          443 LNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMY  522 (1023)
T ss_dssp             HCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHH
Confidence            44556777788888776554  689999999999999998877652   23478999999997     677889999999


Q ss_pred             hHHHHHhhhC
Q psy13759         78 NLDCVNEVIG   87 (114)
Q Consensus        78 ~l~~~~~~l~   87 (114)
                      -+..+++++.
T Consensus       523 ~lGry~~wl~  532 (1023)
T 4hat_C          523 VVGQYPRFLK  532 (1023)
T ss_dssp             HHHTCHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999984

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=95.35  E-value=0.026  Score=49.87  Aligned_cols=75  Identities=17%  Similarity=0.120  Sum_probs=55.9

Q ss_pred             hhHHHHhhHHHHHHhcC-CCCHHHHHHHHHHHHccc--c--ccCcchhhhhhHHHHHHhcCCCC-hHHHHHHHHhHHHHH
Q psy13759         10 DGNFVSKSIKRTQDLVA-DPNQHVKSALASVIMGLS--P--ILGKHNTVDHLLPLFLSQLKDEC-PEVRLNIISNLDCVN   83 (114)
Q Consensus        10 ~~~~~~~ilP~l~~L~~-D~s~~VR~~~a~~l~~la--~--~lg~e~~~~~llP~~~~LL~D~e-~EVR~~a~~~l~~~~   83 (114)
                      +......++-.+...++ ++|| +|.++-..+.-+-  +  .++++. ...+.-.+.++|.|+. .|||..|+..|.++.
T Consensus       795 ~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~-~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll  872 (997)
T 1vsy_5          795 RKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEE-KNKILEFVVSNLYNEQFVEVRVRAASILSDIV  872 (997)
T ss_dssp             CHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTH-HHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Confidence            44455667777766666 7899 9998866533222  1  233332 3588999999999999 999999999999998


Q ss_pred             hhh
Q psy13759         84 EVI   86 (114)
Q Consensus        84 ~~l   86 (114)
                      ...
T Consensus       873 ~c~  875 (997)
T 1vsy_5          873 HNW  875 (997)
T ss_dssp             HSC
T ss_pred             HcC
Confidence            887

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=95.22  E-value=0.071  Score=46.25  Aligned_cols=85  Identities=11%  Similarity=0.084  Sum_probs=64.5

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhh-----hhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhh--Ch
Q psy13759         16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTV-----DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVI--GI   88 (114)
Q Consensus        16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~-----~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l--~~   88 (114)
                      ..+|.+..+..+.+..||.++++.+++++.  +++.-.     ...+|.++.|++.++.++|.+|+..+..++..-  ..
T Consensus       623 G~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~--~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~  700 (810)
T 3now_A          623 QGVSKIEYYLMEDHLYLTRAAAQCLCNLVM--SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCC  700 (810)
T ss_dssp             THHHHHHHHHHSCCTTHHHHHHHHHHHHTT--SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhC--ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence            478889889999999999999999999985  222111     357999999999999999999999999998731  12


Q ss_pred             hhHh--hhHhHHHHHH
Q psy13759         89 QQDV--SFKLGQVDRT  102 (114)
Q Consensus        89 ~~i~--~~iLP~i~~l  102 (114)
                      +.+.  +..+|.+.+|
T Consensus       701 ~~ii~~~g~I~~Lv~L  716 (810)
T 3now_A          701 EKILAIASWLDILHTL  716 (810)
T ss_dssp             HHHHTSTTHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHH
Confidence            2233  3566666554

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=95.15  E-value=0.17  Score=43.91  Aligned_cols=68  Identities=9%  Similarity=0.049  Sum_probs=54.1

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHcccccc-C--cchhh----h--hhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759         16 KSIKRTQDLVADPNQHVKSALASVIMGLSPIL-G--KHNTV----D--HLLPLFLSQLKDECPEVRLNIISNLDCVN   83 (114)
Q Consensus        16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~l-g--~e~~~----~--~llP~~~~LL~D~e~EVR~~a~~~l~~~~   83 (114)
                      ..+|.+..+..+.+..||.++++.+..++..- +  ++...    .  .=+++++.|++.++.++|.+|+..+..+.
T Consensus       606 ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLt  682 (778)
T 3opb_A          606 VYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIA  682 (778)
T ss_dssp             HHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence            38899999999999999999999999988422 1  11111    1  12889999999999999999999888774

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=95.04  E-value=0.054  Score=43.80  Aligned_cols=70  Identities=6%  Similarity=0.013  Sum_probs=58.6

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHccccc--cC-cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759         16 KSIKRTQDLVADPNQHVKSALASVIMGLSPI--LG-KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV   85 (114)
Q Consensus        16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~--lg-~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~   85 (114)
                      ..+|.+-.++.+.+..|+..++..+..++..  -. ........+|.+.+|++....++|..|+..|.+++..
T Consensus       379 G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~  451 (458)
T 3nmz_A          379 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN  451 (458)
T ss_dssp             THHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred             ccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence            3789999999999999999999999999832  11 2233356899999999999999999999999998865

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=94.76  E-value=0.13  Score=40.49  Aligned_cols=81  Identities=4%  Similarity=0.040  Sum_probs=63.9

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHhhhH
Q psy13759         16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVSFK   95 (114)
Q Consensus        16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~~~i   95 (114)
                      -+...+++-.+|+++-+|..+-..++.|..    +...+.+.+.+.+.+.|..|-||++|+-...++.+. .||.+ +.+
T Consensus       104 Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~----~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~-~pe~v-~~~  177 (355)
T 3tjz_B          104 IVTSSLTKDMTGKEDSYRGPAVRALCQITD----STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKC-SFDVV-KRW  177 (355)
T ss_dssp             GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC----TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT-CHHHH-HTT
T ss_pred             HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC----HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc-CHHHH-HHH
Confidence            577888889999999999998888888762    224568999999999999999999999998887754 35443 566


Q ss_pred             hHHHHHH
Q psy13759         96 LGQVDRT  102 (114)
Q Consensus        96 LP~i~~l  102 (114)
                      ++.++++
T Consensus       178 ~~~l~~l  184 (355)
T 3tjz_B          178 VNEAQEA  184 (355)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666554

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=94.67  E-value=0.17  Score=44.95  Aligned_cols=91  Identities=8%  Similarity=0.165  Sum_probs=76.2

Q ss_pred             hHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCC-ChHHHHHHHHhHHHHHhhhChh
Q psy13759         11 GNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDE-CPEVRLNIISNLDCVNEVIGIQ   89 (114)
Q Consensus        11 ~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~-e~EVR~~a~~~l~~~~~~l~~~   89 (114)
                      +-+.-.++|.+-.+..|+...||.++......+...++++.. ..++|.+++-++.. -|..+.+++.-+..+++.. ++
T Consensus        90 e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~~  167 (986)
T 2iw3_A           90 EPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-KD  167 (986)
T ss_dssp             HHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-HH
T ss_pred             ccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-HH
Confidence            344445789999999999999999999999999999999887 88999999999776 6999999999999999877 45


Q ss_pred             hH---hhhHhHHHHHHH
Q psy13759         90 QD---VSFKLGQVDRTS  103 (114)
Q Consensus        90 ~i---~~~iLP~i~~l~  103 (114)
                      ++   ...|+|.+.+..
T Consensus       168 ~~~~~~~~~~p~~~~~~  184 (986)
T 2iw3_A          168 QVALRMPELIPVLSETM  184 (986)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHhccchhcchHhhc
Confidence            43   466778776543

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=94.65  E-value=0.076  Score=39.38  Aligned_cols=68  Identities=15%  Similarity=0.061  Sum_probs=52.6

Q ss_pred             hHHHHHHhcCCCCH--HHHHHHHHHHHccccccC--c-chhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759         17 SIKRTQDLVADPNQ--HVKSALASVIMGLSPILG--K-HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE   84 (114)
Q Consensus        17 ilP~l~~L~~D~s~--~VR~~~a~~l~~la~~lg--~-e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~   84 (114)
                      .+|.+-++++..++  .|+..+|..+..++..-.  + .......+|.+++||+...++||..|+..|..++.
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~   81 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVF   81 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence            45666666665555  899888889988884322  2 33334679999999999999999999999999986

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=94.63  E-value=0.23  Score=36.41  Aligned_cols=85  Identities=11%  Similarity=0.105  Sum_probs=62.9

Q ss_pred             HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcch--------hhhhhHHHHHH-hcCCCChHHHHHHHHhHHHHHhh
Q psy13759         15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHN--------TVDHLLPLFLS-QLKDECPEVRLNIISNLDCVNEV   85 (114)
Q Consensus        15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~--------~~~~llP~~~~-LL~D~e~EVR~~a~~~l~~~~~~   85 (114)
                      ....+.+.....|.|..|-....+.+..+++.+|...        ....++|.++. .+.|+-+-+|..+...+..++..
T Consensus        54 ~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~  133 (278)
T 4ffb_C           54 WRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGL  133 (278)
T ss_dssp             TSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHh
Confidence            3467788888899999999999999999888777542        22456777665 58999999999999988888876


Q ss_pred             hCh-hhHhhhHhHHH
Q psy13759         86 IGI-QQDVSFKLGQV   99 (114)
Q Consensus        86 l~~-~~i~~~iLP~i   99 (114)
                      .++ +.+.+.+++.+
T Consensus       134 ~~~~~~~~e~l~~~l  148 (278)
T 4ffb_C          134 DTSITQSVELVIPFF  148 (278)
T ss_dssp             SSSSHHHHHHHGGGG
T ss_pred             cCcHHHHHHHHHHHH
Confidence            543 45556666554

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=94.48  E-value=0.11  Score=40.45  Aligned_cols=70  Identities=11%  Similarity=0.149  Sum_probs=54.2

Q ss_pred             HhhHHHHHHhcCCCCH----HHHHHHHHHHHcccccc--Ccch----hhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759         15 SKSIKRTQDLVADPNQ----HVKSALASVIMGLSPIL--GKHN----TVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE   84 (114)
Q Consensus        15 ~~ilP~l~~L~~D~s~----~VR~~~a~~l~~la~~l--g~e~----~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~   84 (114)
                      ...+|.+-.++.+.+.    .|+..++..+..++.++  +.+.    .....+|.++++|++.+.+|+..++..+..++.
T Consensus       213 ~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~  292 (354)
T 3nmw_A          213 DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA  292 (354)
T ss_dssp             TTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTS
T ss_pred             cCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhC
Confidence            3478888888776554    59999999999888531  2221    123579999999999999999999999999974

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=94.39  E-value=0.22  Score=36.79  Aligned_cols=69  Identities=20%  Similarity=0.144  Sum_probs=55.8

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHccccc--cCcc-hhhhhhHHHHHHhcCC-CChHHHHHHHHhHHHHHh
Q psy13759         16 KSIKRTQDLVADPNQHVKSALASVIMGLSPI--LGKH-NTVDHLLPLFLSQLKD-ECPEVRLNIISNLDCVNE   84 (114)
Q Consensus        16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~--lg~e-~~~~~llP~~~~LL~D-~e~EVR~~a~~~l~~~~~   84 (114)
                      ..+|.+-.+++..+..||..++..+..|+..  -.+. +....-+|.++++|++ .+.++|.+++..|-.++.
T Consensus        52 G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~  124 (233)
T 3tt9_A           52 RGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS  124 (233)
T ss_dssp             THHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc
Confidence            3789999998999999999999999999852  1222 2224689999999985 689999999988888775

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=94.32  E-value=0.11  Score=45.76  Aligned_cols=79  Identities=16%  Similarity=0.131  Sum_probs=62.9

Q ss_pred             HHHHhhHHHHHHhcC-----CCCHHHHHHHHHHHHccccccCcch-hhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759         12 NFVSKSIKRTQDLVA-----DPNQHVKSALASVIMGLSPILGKHN-TVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV   85 (114)
Q Consensus        12 ~~~~~ilP~l~~L~~-----D~s~~VR~~~a~~l~~la~~lg~e~-~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~   85 (114)
                      .+...++|.+-.+..     |...+||..++-.++..++.+..+. .-..+++.+++-+.|+.+.|..+|+.++..+|+-
T Consensus       491 ~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~  570 (1023)
T 4hat_C          491 RFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQK  570 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence            355668888888876     6888999999999999998885432 2245677777778899999999999999999998


Q ss_pred             hChhh
Q psy13759         86 IGIQQ   90 (114)
Q Consensus        86 l~~~~   90 (114)
                      .+...
T Consensus       571 c~~~l  575 (1023)
T 4hat_C          571 CKYHF  575 (1023)
T ss_dssp             HTHHH
T ss_pred             HHHHh
Confidence            76543

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=94.11  E-value=0.27  Score=42.60  Aligned_cols=76  Identities=9%  Similarity=0.113  Sum_probs=60.6

Q ss_pred             HHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchh----------hhhhHHHHHHhcCCCChHHHHHHHHhHHH
Q psy13759         12 NFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNT----------VDHLLPLFLSQLKDECPEVRLNIISNLDC   81 (114)
Q Consensus        12 ~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~----------~~~llP~~~~LL~D~e~EVR~~a~~~l~~   81 (114)
                      .....+++.+-....|++.+||.++|..|..+|+..+++..          ...++..+.+++.+-..+-+..+.+.+..
T Consensus       536 ~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~  615 (1049)
T 3m1i_C          536 NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGI  615 (1049)
T ss_dssp             HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            34556777777788899999999999999999988776543          45677777778888777778888888888


Q ss_pred             HHhhhC
Q psy13759         82 VNEVIG   87 (114)
Q Consensus        82 ~~~~l~   87 (114)
                      ++...|
T Consensus       616 ii~~~~  621 (1049)
T 3m1i_C          616 IISEER  621 (1049)
T ss_dssp             HHHTCC
T ss_pred             HHHcCC
Confidence            888877

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=94.04  E-value=0.4  Score=36.39  Aligned_cols=77  Identities=17%  Similarity=0.242  Sum_probs=64.5

Q ss_pred             HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHhh
Q psy13759         14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVS   93 (114)
Q Consensus        14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~~   93 (114)
                      .+.++|.+-.-+.|...+||..+-+.+..++...++    +.+.+.+.+=++..++-+|..++.-+..+-+.-|...  .
T Consensus       130 a~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~----~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~--~  203 (266)
T 2of3_A          130 VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP----LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP--L  203 (266)
T ss_dssp             HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG--G
T ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc--c
Confidence            466999999999999999999999999888876544    4567777778899999999999999999999888762  3


Q ss_pred             hHh
Q psy13759         94 FKL   96 (114)
Q Consensus        94 ~iL   96 (114)
                      ..+
T Consensus       204 ~~l  206 (266)
T 2of3_A          204 KSL  206 (266)
T ss_dssp             GGG
T ss_pred             ccc
Confidence            455

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=93.83  E-value=0.19  Score=41.97  Aligned_cols=87  Identities=15%  Similarity=0.074  Sum_probs=64.5

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHccccc---cCcchh-hhhhHHHHHHhcCC-CChHHHHHHHHhHHHHHhhhC-hh
Q psy13759         16 KSIKRTQDLVADPNQHVKSALASVIMGLSPI---LGKHNT-VDHLLPLFLSQLKD-ECPEVRLNIISNLDCVNEVIG-IQ   89 (114)
Q Consensus        16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~---lg~e~~-~~~llP~~~~LL~D-~e~EVR~~a~~~l~~~~~~l~-~~   89 (114)
                      ..+|.+-.+++..+..||..++..+..|+..   -.+... ...-+|.+++||+. ...+++..++..|-.++..=. ..
T Consensus        90 G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~  169 (584)
T 3l6x_A           90 KGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKM  169 (584)
T ss_dssp             THHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHH
T ss_pred             CCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhH
Confidence            3789999999999999999999999999953   223222 34689999999997 688999999998888876211 11


Q ss_pred             hHhhhHhHHHHHH
Q psy13759         90 QDVSFKLGQVDRT  102 (114)
Q Consensus        90 ~i~~~iLP~i~~l  102 (114)
                      .+.+.-+|.+-++
T Consensus       170 ~I~~~alp~Lv~L  182 (584)
T 3l6x_A          170 EIVDHALHALTDE  182 (584)
T ss_dssp             HHHHHTHHHHHHH
T ss_pred             HHHhccHHHHHHH
Confidence            2334445655554

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=93.82  E-value=0.1  Score=45.73  Aligned_cols=84  Identities=10%  Similarity=-0.030  Sum_probs=66.9

Q ss_pred             hccCChhHHHH----hhHHHHHHhc---CCCCHHHHHHHHHHHHccccccCcc--------hhhhhhHHHHHHhcC----
Q psy13759          5 LTINSDGNFVS----KSIKRTQDLV---ADPNQHVKSALASVIMGLSPILGKH--------NTVDHLLPLFLSQLK----   65 (114)
Q Consensus         5 ~~~~~~~~~~~----~ilP~l~~L~---~D~s~~VR~~~a~~l~~la~~lg~e--------~~~~~llP~~~~LL~----   65 (114)
                      ..++.++.+..    .+.+.+.+..   ...+|+.|.++--.+..+++.+...        .....+++.+..+++    
T Consensus       425 ~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~  504 (980)
T 3ibv_A          425 INSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVC  504 (980)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTT
T ss_pred             HHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCC
Confidence            34457788788    7888887654   3568999999999999998876532        122368899999976    


Q ss_pred             -CCChHHHHHHHHhHHHHHhhhCh
Q psy13759         66 -DECPEVRLNIISNLDCVNEVIGI   88 (114)
Q Consensus        66 -D~e~EVR~~a~~~l~~~~~~l~~   88 (114)
                       |+.|-||..+..-+..+++++..
T Consensus       505 ~~~hp~V~~~~~~~l~rys~~~~~  528 (980)
T 3ibv_A          505 RHPHPLVQLLYMEILVRYASFFDY  528 (980)
T ss_dssp             TCCCHHHHHHHHHHHHHTGGGGGT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhc
Confidence             99999999999999999999964

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=93.64  E-value=0.28  Score=40.97  Aligned_cols=72  Identities=17%  Similarity=0.117  Sum_probs=57.6

Q ss_pred             HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccC--c-chhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759         13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILG--K-HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE   84 (114)
Q Consensus        13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg--~-e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~   84 (114)
                      +...-+|.+-.+++..+..++..+|..+..+|..-.  + .......+|.+++||+..+.+||..|+..|..++.
T Consensus        45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~  119 (584)
T 3l6x_A           45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISF  119 (584)
T ss_dssp             CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTS
T ss_pred             cccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence            444567777777788889999999999999984221  2 23334689999999999999999999999999986

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=93.35  E-value=0.2  Score=42.91  Aligned_cols=58  Identities=14%  Similarity=0.055  Sum_probs=47.1

Q ss_pred             HhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759         23 DLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN   83 (114)
Q Consensus        23 ~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~   83 (114)
                      .......|+||.+-=--+.-+...+..   ...++|.++.-|+|.+-|||..|+..+.-++
T Consensus       270 ~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA  327 (800)
T 3oc3_A          270 GFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP  327 (800)
T ss_dssp             TGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC
T ss_pred             hhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc
Confidence            455888999999766655555555543   6788999999999999999999999998888

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=92.87  E-value=0.36  Score=41.87  Aligned_cols=74  Identities=9%  Similarity=0.039  Sum_probs=58.6

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHccccccC--cchhhhhhHHHHHHhcCCCChH---HHHHHHHhHHHHHhhhChhh
Q psy13759         17 SIKRTQDLVADPNQHVKSALASVIMGLSPILG--KHNTVDHLLPLFLSQLKDECPE---VRLNIISNLDCVNEVIGIQQ   90 (114)
Q Consensus        17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg--~e~~~~~llP~~~~LL~D~e~E---VR~~a~~~l~~~~~~l~~~~   90 (114)
                      ++|.+..+++..++.+|..++..+..++..-.  .....+..+|.+++++......   +|..|+..|.++.-...|+.
T Consensus       458 vIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~  536 (778)
T 3opb_A          458 LISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL  536 (778)
T ss_dssp             HHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH
Confidence            88999999999999999999999999984422  2334457899999999987544   99999999999886555544

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=92.82  E-value=0.54  Score=37.93  Aligned_cols=68  Identities=13%  Similarity=0.105  Sum_probs=53.5

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHccccccC---cch-hhhhhHHHHHHh-cCCCChHHHHHHHHhHHHHHh
Q psy13759         17 SIKRTQDLVADPNQHVKSALASVIMGLSPILG---KHN-TVDHLLPLFLSQ-LKDECPEVRLNIISNLDCVNE   84 (114)
Q Consensus        17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg---~e~-~~~~llP~~~~L-L~D~e~EVR~~a~~~l~~~~~   84 (114)
                      .+|.+-.++...+..||..++..+..++..-.   ++. .....+|.++++ ++..+.+++..++..+..++.
T Consensus       244 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~  316 (458)
T 3nmz_A          244 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA  316 (458)
T ss_dssp             HHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHcc
Confidence            58999999999999999999999999985311   122 223679999997 555789999988888877776

>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17

Probab=92.62  E-value=0.53  Score=34.07  Aligned_cols=74  Identities=9%  Similarity=-0.080  Sum_probs=55.1

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHhhhH
Q psy13759         17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVSFK   95 (114)
Q Consensus        17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~~~i   95 (114)
                      +.+.+...++|.+..+|..+.....   +. .++...+.+++++..+++|++--||+++.-.|..+++. .++.+...+
T Consensus       125 ~~~~i~~W~~s~~~w~rR~ai~~~l---~~-~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~-~~~~v~~fl  198 (220)
T 2b6c_A          125 LPTIFALFYGAENFWNRRVALNLQL---ML-KEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT-NPQWVEELM  198 (220)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHTTT---TC-GGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT-CHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHH---HH-HHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh-CHHHHHHHH
Confidence            5577788888888777777766442   22 33444567899999999999999999999999999887 565554443

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=91.56  E-value=0.42  Score=36.45  Aligned_cols=71  Identities=13%  Similarity=0.068  Sum_probs=40.6

Q ss_pred             HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759         15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV   85 (114)
Q Consensus        15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~   85 (114)
                      ..+...+.+|..-++.+|..+.=..+.+++..-+....-+.++--+..|++-+++.+|.-++..+..+...
T Consensus       149 ~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          149 KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF  219 (265)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            33455555555555666666666666666655554444455555556666666666666666666555543

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=91.34  E-value=0.39  Score=42.60  Aligned_cols=74  Identities=16%  Similarity=0.050  Sum_probs=45.6

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHhhhHhHH
Q psy13759         20 RTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVSFKLGQ   98 (114)
Q Consensus        20 ~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~~~iLP~   98 (114)
                      ++..+.+|.+..||.+++..++.++  +|.+   +.+..++-.|+++.+++||.+++..+..++.--|...+.+.+-|.
T Consensus       582 LL~~~~~d~~d~VRraAViaLGlI~--~g~~---e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L  655 (963)
T 4ady_A          582 LLHVAVSDSNDDVRRAAVIALGFVL--LRDY---TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPL  655 (963)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHHHT--SSSC---SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred             HHHHhccCCcHHHHHHHHHHHHhhc--cCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence            4555566777777777777776654  2222   123333444667789999999999888877555544444444443

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=90.50  E-value=1.5  Score=32.83  Aligned_cols=71  Identities=17%  Similarity=0.184  Sum_probs=42.8

Q ss_pred             HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759         15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG   87 (114)
Q Consensus        15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~   87 (114)
                      ..+.--+-.+++|++..=|.++-..+..+++.-.+  +..-++|-+..||.|.+--||..+++.+..++..-+
T Consensus       143 ~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~--yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~np  213 (253)
T 2db0_A          143 ASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFK--YVNPFLPRIINLLHDGDEIVRASAVEALVHLATLND  213 (253)
T ss_dssp             HHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHH--HHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCcc--ccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCH
Confidence            33444444555566666666666666666644322  223466777777777777777777777776665443

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=88.02  E-value=0.99  Score=40.24  Aligned_cols=82  Identities=13%  Similarity=0.026  Sum_probs=61.1

Q ss_pred             ccCChhHHHHhhHHHHHHhcC--CCCHHHHHHHHHHHHccccccCcch---hhhhhHHHHHHhcC-----CCChHHHHHH
Q psy13759          6 TINSDGNFVSKSIKRTQDLVA--DPNQHVKSALASVIMGLSPILGKHN---TVDHLLPLFLSQLK-----DECPEVRLNI   75 (114)
Q Consensus         6 ~~~~~~~~~~~ilP~l~~L~~--D~s~~VR~~~a~~l~~la~~lg~e~---~~~~llP~~~~LL~-----D~e~EVR~~a   75 (114)
                      +++.++.....+++.+.+..+  ..+|+.+.+++-.++.++..+.++.   ..-.++|.+++|+.     |+-+-||.++
T Consensus       467 t~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i  546 (1073)
T 3gjx_A          467 THLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNI  546 (1073)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHH
Confidence            345667777778888865443  4689999999999999998777532   23467888888884     3456778887


Q ss_pred             HHhHHHHHhhhC
Q psy13759         76 ISNLDCVNEVIG   87 (114)
Q Consensus        76 ~~~l~~~~~~l~   87 (114)
                      .--+..+.+|+.
T Consensus       547 ~~vlgrY~~wl~  558 (1073)
T 3gjx_A          547 MYIVGQYPRFLR  558 (1073)
T ss_dssp             HHHHHHCHHHHH
T ss_pred             HHHHhhhHHHHH
Confidence            778888888885

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=87.57  E-value=0.43  Score=39.85  Aligned_cols=49  Identities=14%  Similarity=-0.003  Sum_probs=41.0

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhh----hhhHHHHHHhcC
Q psy13759         17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTV----DHLLPLFLSQLK   65 (114)
Q Consensus        17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~----~~llP~~~~LL~   65 (114)
                      +.|.+..+..|++..||.+++..|..||..-|.+...    ..++|.+..+++
T Consensus        77 v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~il~~L~~~l~  129 (684)
T 4gmo_A           77 VHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDVLTAIEHAAK  129 (684)
T ss_dssp             HHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcChHHHHHHHHH
Confidence            4467789999999999999999999999888866543    468888888875

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=87.21  E-value=1.4  Score=36.49  Aligned_cols=57  Identities=18%  Similarity=0.078  Sum_probs=45.4

Q ss_pred             CCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759         27 DPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV   85 (114)
Q Consensus        27 D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~   85 (114)
                      -.+..++..+|+.|...-..|+.-.  +.-+-..+.||.|++..||..|+..++.+|+-
T Consensus        39 kg~~k~K~LaaQ~I~kffk~FP~l~--~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~   95 (507)
T 3u0r_A           39 KGGTKEKRLAAQFIPKFFKHFPELA--DSAINAQLDLCEDEDVSIRRQAIKELPQFATG   95 (507)
T ss_dssp             GSCHHHHHHHHHHHHHHGGGCGGGH--HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT
T ss_pred             CCCHHHHHHHHHHHHHHHhhChhhH--HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh
Confidence            3468888888888888888887532  45677788899999999999999988888874

>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}

Probab=86.80  E-value=6.4  Score=28.46  Aligned_cols=90  Identities=6%  Similarity=0.026  Sum_probs=62.4

Q ss_pred             hhHHHHhhHHHHHHh--cCCCCH-HHHHHHHHHHHccccccCc--chhhhhhHHHHHHhcCCC--ChHHHHHHHHhHHHH
Q psy13759         10 DGNFVSKSIKRTQDL--VADPNQ-HVKSALASVIMGLSPILGK--HNTVDHLLPLFLSQLKDE--CPEVRLNIISNLDCV   82 (114)
Q Consensus        10 ~~~~~~~ilP~l~~L--~~D~s~-~VR~~~a~~l~~la~~lg~--e~~~~~llP~~~~LL~D~--e~EVR~~a~~~l~~~   82 (114)
                      =+....+++|.+-.+  .+.-.. .+|..+|+.+..+|..+|.  ......+...+.+-+.|+  ....+-.|+..+.. 
T Consensus        81 lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~-  159 (196)
T 4atg_A           81 IDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSI-  159 (196)
T ss_dssp             CGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH-
T ss_pred             hHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHH-
Confidence            344455677777442  222222 8999999999999999997  444567888888888885  55556566555544 


Q ss_pred             HhhhChhhHhhhHhHHHHHHH
Q psy13759         83 NEVIGIQQDVSFKLGQVDRTS  103 (114)
Q Consensus        83 ~~~l~~~~i~~~iLP~i~~l~  103 (114)
                         +|++.+..-++|.+....
T Consensus       160 ---lG~~~vr~~llP~l~~~~  177 (196)
T 4atg_A          160 ---LSKNVVNTVIREHAEEYK  177 (196)
T ss_dssp             ---HCHHHHHTHHHHHHHHHH
T ss_pred             ---hHHHHHHHhhhcCHHHHH
Confidence               566777777889887654

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=86.23  E-value=1.5  Score=37.77  Aligned_cols=65  Identities=12%  Similarity=0.046  Sum_probs=47.7

Q ss_pred             CHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHhhhHhHHHH
Q psy13759         29 NQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVSFKLGQVD  100 (114)
Q Consensus        29 s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~~~iLP~i~  100 (114)
                      -.-||..+|+.++-+ .+++.+   -.++-.++..++..+||||-..+-.+.-+.+.+..   ...++|.+.
T Consensus       241 VAPVRETaAQtLGaL-~hLp~e---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~aVL  305 (800)
T 3oc3_A          241 VAPVRDAAAYLLSRI-YPLIGP---NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCRKLV  305 (800)
T ss_dssp             BCHHHHHHHHHHHHH-TTTSCS---CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHHHHH
T ss_pred             eeehHHHHHHHHHHH-HhCChh---HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHHHHH
Confidence            347999999999999 899888   23444444566889999999999999888555542   344555543

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=85.85  E-value=4  Score=31.05  Aligned_cols=74  Identities=9%  Similarity=0.024  Sum_probs=59.3

Q ss_pred             hhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759         10 DGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG   87 (114)
Q Consensus        10 ~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~   87 (114)
                      +++....+.-.+..+.++++.-.|-.+|+.++.+ +..   .....+..++.+|++-..++|+.+++..+-+++..=+
T Consensus       109 ~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~---~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~  182 (265)
T 3b2a_A          109 GSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPL---EDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA  182 (265)
T ss_dssp             CHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBS---CCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred             CHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Ccc---cchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence            4445566888889999999999999999999998 222   2234688888999988899999999999999888654

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=85.46  E-value=5.3  Score=29.80  Aligned_cols=68  Identities=16%  Similarity=0.236  Sum_probs=53.0

Q ss_pred             HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759         14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE   84 (114)
Q Consensus        14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~   84 (114)
                      .+-.+|-+..|+.|.+.-||.++.+.+..+|..=++   ...++--.++=++|++-.|....-..+.++.-
T Consensus       179 v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk---lRkii~~kl~e~~D~S~lv~~~V~egL~rl~l  246 (253)
T 2db0_A          179 VNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK---LRKVVIKRLEELNDTSSLVNKTVKEGISRLLL  246 (253)
T ss_dssp             HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH---HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred             cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH---HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            445788888999999999999999999999965444   34455556677889998888888877777653

>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*

Probab=85.08  E-value=2.6  Score=30.63  Aligned_cols=70  Identities=10%  Similarity=-0.111  Sum_probs=48.3

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhH
Q psy13759         17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQD   91 (114)
Q Consensus        17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i   91 (114)
                      ..+.+...+.|.+..+|..+...+  +.-.  .+...+.+++++..+++|++.-||.++.-.|..+++. .++.+
T Consensus       132 ~~~~l~~W~~s~~~w~rR~ai~~~--l~~~--~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~-~p~~v  201 (232)
T 3jxy_A          132 ISAYIPKWIASDNIWLQRAAILFQ--LKYK--QKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKT-NPDVV  201 (232)
T ss_dssp             GGGTHHHHHHSSCHHHHHHHHHTT--TTCG--GGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT-CHHHH
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHH--HHHH--hCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh-CHHHH
Confidence            446666666666655555554433  2221  2233457888999999999999999999999998887 55443

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=83.41  E-value=3  Score=37.19  Aligned_cols=78  Identities=10%  Similarity=0.114  Sum_probs=59.4

Q ss_pred             HHHHhhHHHHHHhcCCC-----CHHHHHHHHHHHHccccccCcchh-hhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759         12 NFVSKSIKRTQDLVADP-----NQHVKSALASVIMGLSPILGKHNT-VDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV   85 (114)
Q Consensus        12 ~~~~~ilP~l~~L~~D~-----s~~VR~~~a~~l~~la~~lg~e~~-~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~   85 (114)
                      .+.-.++|.+-.|...+     ...||+.++-.++...+.+..+.. -+.++..+++.+.|++++|+.+|+..+.++|+-
T Consensus       517 ~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~  596 (1073)
T 3gjx_A          517 RFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQK  596 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            45666777777777544     567888877788887777654422 246677778888999999999999999999998


Q ss_pred             hChh
Q psy13759         86 IGIQ   89 (114)
Q Consensus        86 l~~~   89 (114)
                      .+..
T Consensus       597 C~~~  600 (1073)
T 3gjx_A          597 CRRH  600 (1073)
T ss_dssp             TGGG
T ss_pred             HHHH
Confidence            7764

>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A

Probab=83.27  E-value=4.7  Score=27.67  Aligned_cols=77  Identities=13%  Similarity=0.108  Sum_probs=53.0

Q ss_pred             HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHhh
Q psy13759         14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVS   93 (114)
Q Consensus        14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~~   93 (114)
                      ...++|.+-.-.+|.||-|...++..+....         +.++|.+.+.++.++..=.-.++..+   ...++.+ ...
T Consensus        29 i~p~lp~LL~WLQD~NWPvA~~i~~~L~~~~---------~~l~p~I~~vl~s~D~~W~ywil~~l---v~~~~~~-~~~   95 (134)
T 3ut4_A           29 IEPIIFDLLKWLQDYNWPIAKDILPVVVLHQ---------SIAMPHILTILQGNDIMWKYWVIKLM---IPYLIYP-NKQ   95 (134)
T ss_dssp             HHHHHHHHHGGGSCTTSTTHHHHHHHHHHTH---------HHHHHHHHHHHHSSCHHHHHHHHHHH---GGGCCHH-HHH
T ss_pred             HHHHHHHHHHHHhcCCCccHHHHHHHHHHcc---------HhhHHHHHHHHHcCChHHHHHHHHHH---HHcCCHH-HHH
Confidence            4568888899999999999999999988743         46778888887777766665555432   2333332 345


Q ss_pred             hHhHHHHHHH
Q psy13759         94 FKLGQVDRTS  103 (114)
Q Consensus        94 ~iLP~i~~l~  103 (114)
                      .+.|-+.+++
T Consensus        96 ~l~~eL~rl~  105 (134)
T 3ut4_A           96 LVKSELERLS  105 (134)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5666666654

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=82.73  E-value=2.3  Score=37.54  Aligned_cols=51  Identities=8%  Similarity=0.006  Sum_probs=36.6

Q ss_pred             CCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhc--CCCChHHHHHHHHhHHHH
Q psy13759         27 DPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQL--KDECPEVRLNIISNLDCV   82 (114)
Q Consensus        27 D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL--~D~e~EVR~~a~~~l~~~   82 (114)
                      +...|||.++...+..++...     .+.+-+++..+.  +++.+|||.+|...+-.-
T Consensus       489 ~~~~rvr~aAi~ALr~~~~~~-----p~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t  541 (1056)
T 1lsh_A          489 EYSTRVQAEAIMALRNIAKRD-----PRKVQEIVLPIFLNVAIKSELRIRSCIVFFES  541 (1056)
T ss_dssp             CSCHHHHHHHHHTTTTGGGTC-----HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred             ccchHHHHHHHHHHHHhhhhc-----hHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Confidence            446799999999999988432     223445555555  558999999999887643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	114
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	6e-07
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	6e-05
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.003
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	1e-05
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	0.002

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 6e-07
 Identities = 20/87 (22%), Positives = 34/87 (39%)

Query: 1   MKLLLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLF 60
           +K L+         +  I +   +  DPN   +      I  LS + G+  T  H+LP  
Sbjct: 465 LKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTV 524

Query: 61  LSQLKDECPEVRLNIISNLDCVNEVIG 87
           L    D    VR N+  +L  +  ++ 
Sbjct: 525 LRMAGDPVANVRFNVAKSLQKIGPILD 551

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 6e-05
 Identities = 14/59 (23%), Positives = 22/59 (37%)

Query: 32  VKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ 90
           V  ALA  +   + ++G    V  LLP   S    E   VR   + +L  ++       
Sbjct: 64  VLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSD 122

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (75), Expect = 0.003
 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 1/71 (1%)

Query: 23 DLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV 82
          D + + +  ++      +  ++  LG   T   LLP     + DE  EV L +   L   
Sbjct: 17 DELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDE-DEVLLALAEQLGTF 75

Query: 83 NEVIGIQQDVS 93
            ++G  + V 
Sbjct: 76 TTLVGGPEYVH 86

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 40.1 bits (93), Expect = 1e-05
 Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 16/56 (28%)

Query: 24  LVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNL 79
           L+ DP+  V+ A                  +H     L +L +  PEVRL I   L
Sbjct: 194 LLHDPDWTVRLAAV----------------EHASLEALRELDEPDPEVRLAIAGRL 233

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 33.9 bits (77), Expect = 0.002
 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 15/58 (25%)

Query: 22 QDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNL 79
             +ADP    ++              +++ V+ L PL    ++D    VR  +   L
Sbjct: 48 VQYLADPFWERRAIAV-----------RYSPVEALTPL----IRDSDEVVRRAVAYRL 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	114
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.39
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.27
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.96
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.57
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.48
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.47
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.26
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.03
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.0
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	97.95
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.9
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.88
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.88
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.87
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.86
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	97.76
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.72
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.61
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	97.56
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.53
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	97.02
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	96.93
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.93
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	96.67
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.65
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	96.32
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	96.31
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.12
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	96.01
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	95.76
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	95.69
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	95.64
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	95.27
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	93.35
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	92.91
d2b6ca1	213	Hypothetical protein EF3068 {Enterococcus faecalis	80.54

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=6.2e-13  Score=104.25  Aligned_cols=99  Identities=17%  Similarity=0.159  Sum_probs=88.2

Q ss_pred             hccCChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759          5 LTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE   84 (114)
Q Consensus         5 ~~~~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~   84 (114)
                      +..++++...+.++|.+..+++|++|+||.++++.++++++.+|++...+.++|.+.++++|++++||..++..+..+++
T Consensus       231 ~~~~~~~~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~  310 (588)
T d1b3ua_         231 AQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCE  310 (588)
T ss_dssp             HHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             hccCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            44567788888899999999999999999999999999999999999989999999999999999999999999999999


Q ss_pred             hhChhh----HhhhHhHHHHHHH
Q psy13759         85 VIGIQQ----DVSFKLGQVDRTS  103 (114)
Q Consensus        85 ~l~~~~----i~~~iLP~i~~l~  103 (114)
                      .++.+.    ..++++|.+.++.
T Consensus       311 ~l~~~~~~~~~~~~i~~~l~~~~  333 (588)
T d1b3ua_         311 NLSADCRENVIMSQILPCIKELV  333 (588)
T ss_dssp             TSCTTTHHHHHHHTHHHHHHHHH
T ss_pred             HHhhhhhhhhhHHHHHHHHHHhh
Confidence            987653    4577888876653

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=7.5e-12  Score=97.97  Aligned_cols=100  Identities=20%  Similarity=0.215  Sum_probs=90.8

Q ss_pred             hhccCChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759          4 LLTINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN   83 (114)
Q Consensus         4 l~~~~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~   83 (114)
                      +.+.++++...+.++|.+..+.+|++|++|.+++..+..+++.+|.+...++++|.+.++++|+.++||.++++.+..++
T Consensus       468 l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~  547 (588)
T d1b3ua_         468 LVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG  547 (588)
T ss_dssp             HHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHG
T ss_pred             HHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            34445777778889999999999999999999999999999999999988999999999999999999999999999999


Q ss_pred             hhhChhhHhhhHhHHHHHHH
Q psy13759         84 EVIGIQQDVSFKLGQVDRTS  103 (114)
Q Consensus        84 ~~l~~~~i~~~iLP~i~~l~  103 (114)
                      +.++.+.+.+.+.|.+++|.
T Consensus       548 ~~~~~~~~~~~i~~~l~~L~  567 (588)
T d1b3ua_         548 PILDNSTLQSEVKPILEKLT  567 (588)
T ss_dssp             GGSCHHHHHHHHHHHHHHHT
T ss_pred             HHcCcHhHHHHHHHHHHHHc
Confidence            99999888889999998874

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.6e-09  Score=79.91  Aligned_cols=96  Identities=11%  Similarity=0.079  Sum_probs=77.3

Q ss_pred             ccCChhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcch---hhhhhHHHHHHhcCCCChHHHHHHHHhHHHH
Q psy13759          6 TINSDGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHN---TVDHLLPLFLSQLKDECPEVRLNIISNLDCV   82 (114)
Q Consensus         6 ~~~~~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~---~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~   82 (114)
                      +.++ +.....++|.+....+|++|++|.++...++.+++..+++.   ....++|.+..+++|+++.||.+|+..+.++
T Consensus       356 ~~~~-~~~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i  434 (458)
T d1ibrb_         356 TCCE-DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRI  434 (458)
T ss_dssp             HHTT-TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             Hhcc-HhhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            3344 44567899999999999999999999999999997655443   3467999999999999999999999999999


Q ss_pred             HhhhChhhH-hhhHhHHHHHH
Q psy13759         83 NEVIGIQQD-VSFKLGQVDRT  102 (114)
Q Consensus        83 ~~~l~~~~i-~~~iLP~i~~l  102 (114)
                      +++++.... .+++-|.++.|
T Consensus       435 ~~~~~~~~~~~~~l~~ll~~l  455 (458)
T d1ibrb_         435 CELLPEAAINDVYLAPLLQCL  455 (458)
T ss_dssp             HHHGGGGCCSTTTHHHHHHHH
T ss_pred             HHHhhcccchhhHHHHHHHHH
Confidence            999976543 34455655554

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.57  E-value=1.2e-07  Score=60.24  Aligned_cols=59  Identities=14%  Similarity=0.225  Sum_probs=50.0

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759         17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN   83 (114)
Q Consensus        17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~   83 (114)
                      .+|.+..+++|.+|+||..++..++++.        ....+|.+..+|+|+++.||.+++..+..++
T Consensus        23 ~~~~L~~~l~d~~~~vR~~a~~~L~~~~--------~~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~   81 (111)
T d1te4a_          23 AFEPLLESLSNEDWRIRGAAAWIIGNFQ--------DERAVEPLIKLLEDDSGFVRSGAARSLEQIG   81 (111)
T ss_dssp             THHHHHHGGGCSCHHHHHHHHHHHGGGC--------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcc--------hhhhHHHHHhhhccchhHHHHHHHHHHHHhC
Confidence            3566677889999999999999998765        2356899999999999999999999998764

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.47  E-value=1.3e-07  Score=60.02  Aligned_cols=57  Identities=12%  Similarity=0.143  Sum_probs=50.1

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHH
Q psy13759         16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLD   80 (114)
Q Consensus        16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~   80 (114)
                      ..+|.+..+++|++|.||.+++..++++.        ....+|.+..+++|++++||.+++..|.
T Consensus        53 ~~~~~L~~~l~d~~~~VR~~a~~aL~~i~--------~~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          53 RAVEPLIKLLEDDSGFVRSGAARSLEQIG--------GERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHHHHHHCCTHHHHHHHHHHHHHC--------SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             hhHHHHHhhhccchhHHHHHHHHHHHHhC--------ccchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            36788888999999999999999999875        2467899999999999999999998875

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=9.1e-07  Score=72.25  Aligned_cols=80  Identities=15%  Similarity=0.086  Sum_probs=67.0

Q ss_pred             hhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchh--hhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759         10 DGNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNT--VDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG   87 (114)
Q Consensus        10 ~~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~--~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~   87 (114)
                      ++.+...++|.+....++++|++|.++...++.+++...+...  ...++|.++++++|+++.||.+++..+..+++++.
T Consensus       389 ~~~il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~  468 (888)
T d1qbkb_         389 RDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVV  468 (888)
T ss_dssp             CSSSHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhh
Confidence            3455678999999999999999999999999988864433222  25789999999999999999999999999999886


Q ss_pred             hh
Q psy13759         88 IQ   89 (114)
Q Consensus        88 ~~   89 (114)
                      ++
T Consensus       469 ~~  470 (888)
T d1qbkb_         469 SQ  470 (888)
T ss_dssp             SS
T ss_pred             hh
Confidence            54

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=9.7e-06  Score=56.26  Aligned_cols=66  Identities=14%  Similarity=0.055  Sum_probs=32.4

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759         17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE   84 (114)
Q Consensus        17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~   84 (114)
                      .+|.+..+++|++|.||..++..++.+....+.+..  .+-..+..+++|++++||.+++..+..++.
T Consensus        51 ~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~--~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~  116 (276)
T d1oyza_          51 AVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN--VFNILNNMALNDKSACVRATAIESTAQRCK  116 (276)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH--HHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccc--hHHHHHHHHhcCCChhHHHHHHHHHHHHcc
Confidence            455555555566666665555555554432222111  112223344555556666666555555544

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.00  E-value=1.6e-05  Score=55.04  Aligned_cols=61  Identities=15%  Similarity=-0.048  Sum_probs=50.0

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759         17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV   85 (114)
Q Consensus        17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~   85 (114)
                      -...+..+++|+++.||..++..+..++.        +..+|.+.++++|++++||..++..+..+...
T Consensus        20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~--------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~   80 (276)
T d1oyza_          20 NDDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC   80 (276)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHhhCC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence            44556778899999999999999887652        45689999999999999999999998777543

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=3.2e-05  Score=60.73  Aligned_cols=79  Identities=11%  Similarity=0.117  Sum_probs=67.6

Q ss_pred             hHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhh---hhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759         11 GNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTV---DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG   87 (114)
Q Consensus        11 ~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~---~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~   87 (114)
                      +.....++|.+.....+.+|++|.+.+..++.+++..+.+...   ..++|.+.+.++|+.+.||.+++..+..+++.++
T Consensus       361 ~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~  440 (876)
T d1qgra_         361 DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP  440 (876)
T ss_dssp             GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred             hhhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcc
Confidence            3456778899999999999999999999999988766654433   4789999999999999999999999999999876


Q ss_pred             hh
Q psy13759         88 IQ   89 (114)
Q Consensus        88 ~~   89 (114)
                      ..
T Consensus       441 ~~  442 (876)
T d1qgra_         441 EA  442 (876)
T ss_dssp             GG
T ss_pred             hh
Confidence            53

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=2.2e-05  Score=57.09  Aligned_cols=87  Identities=16%  Similarity=0.109  Sum_probs=67.1

Q ss_pred             HHHhhHHHHHHhc-------CCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759         13 FVSKSIKRTQDLV-------ADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV   85 (114)
Q Consensus        13 ~~~~ilP~l~~L~-------~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~   85 (114)
                      ....+.|.+....       .|..|.+|.+++..+..++..+|++. ...++|.+.+.++|++|.+|.+++..+..+++.
T Consensus       317 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~  395 (458)
T d1ibrb_         317 ALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG  395 (458)
T ss_dssp             HHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred             HHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhh-hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            3445666665543       47788999999999999999999764 578999999999999999999999999998876


Q ss_pred             hChhh---HhhhHhHHHH
Q psy13759         86 IGIQQ---DVSFKLGQVD  100 (114)
Q Consensus        86 l~~~~---i~~~iLP~i~  100 (114)
                      .+.+.   ....++|.+.
T Consensus       396 ~~~~~~~~~l~~i~~~l~  413 (458)
T d1ibrb_         396 PEPSQLKPLVIQAMPTLI  413 (458)
T ss_dssp             SCTTTTCTTTTTHHHHHH
T ss_pred             cCHhHHHHHHHHHHHHHH
Confidence            54432   3344555443

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.88  E-value=4e-05  Score=59.76  Aligned_cols=79  Identities=11%  Similarity=0.140  Sum_probs=68.2

Q ss_pred             hHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchh---hhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759         11 GNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNT---VDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG   87 (114)
Q Consensus        11 ~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~---~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~   87 (114)
                      +.+...+.+.+.....+.+|++|.++...+..+++..+++..   ...++|.+.++++|++++||.+++..+..+++.++
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~  443 (861)
T d2bpta1         364 NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVA  443 (861)
T ss_dssp             GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHG
T ss_pred             hhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhc
Confidence            345666788888999999999999999999999987776543   35789999999999999999999999999999887


Q ss_pred             hh
Q psy13759         88 IQ   89 (114)
Q Consensus        88 ~~   89 (114)
                      +.
T Consensus       444 ~~  445 (861)
T d2bpta1         444 ES  445 (861)
T ss_dssp             GG
T ss_pred             hh
Confidence            64

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=1e-05  Score=66.82  Aligned_cols=86  Identities=10%  Similarity=0.046  Sum_probs=68.7

Q ss_pred             HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchh--hhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChh--h
Q psy13759         15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNT--VDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ--Q   90 (114)
Q Consensus        15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~--~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~--~   90 (114)
                      ..++|.+....+|++|.+|.++...+..+....|....  ...++|.|++.++|++++||.+|+..+..+++.-+.-  .
T Consensus       961 ~~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~~li~~ll~~l~d~~~~vR~~al~~l~~~~~~~p~li~~ 1040 (1207)
T d1u6gc_         961 ETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRD 1040 (1207)
T ss_dssp             GGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGG
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHHHHH
Confidence            34789999999999999999999999998888776543  4578899999999999999999999999988764421  1


Q ss_pred             HhhhHhHHHH
Q psy13759         91 DVSFKLGQVD  100 (114)
Q Consensus        91 i~~~iLP~i~  100 (114)
                      ....++|.+-
T Consensus      1041 ~l~~llp~l~ 1050 (1207)
T d1u6gc_        1041 LLDTVLPHLY 1050 (1207)
T ss_dssp             GHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3455666553

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=3e-05  Score=63.07  Aligned_cols=76  Identities=13%  Similarity=0.115  Sum_probs=66.3

Q ss_pred             HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhh---hhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChh
Q psy13759         14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTV---DHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQ   89 (114)
Q Consensus        14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~---~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~   89 (114)
                      ..+++|.+....+|+++.||..++..++.+++.++.+...   ..++|.++..+.|+++.||.+++..+..+++..+.+
T Consensus       434 l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~  512 (888)
T d1qbkb_         434 LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE  512 (888)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTS
T ss_pred             chhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhh
Confidence            4568899999999999999999999999999877665443   468999999999999999999999999999887754

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.76  E-value=5.2e-06  Score=60.48  Aligned_cols=43  Identities=30%  Similarity=0.351  Sum_probs=23.6

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHh
Q psy13759         20 RTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISN   78 (114)
Q Consensus        20 ~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~   78 (114)
                      .+..+++|++|+||+++++.+                -|.++..|+|++++||.+++++
T Consensus       190 ~L~~l~~D~d~~VR~aaae~~----------------~~~ll~~L~D~d~~VR~aA~~~  232 (233)
T d1lrva_         190 DLLELLHDPDWTVRLAAVEHA----------------SLEALRELDEPDPEVRLAIAGR  232 (233)
T ss_dssp             GGGGGGGCSSHHHHHHHHHHS----------------CHHHHHHCCCCCHHHHHHHHCC
T ss_pred             HHHHHHhCCCHHHHHHHHHhc----------------cHHHHHHhCCCCHHHHHHHHHh
Confidence            344555555555555555421                1334556667777777666544

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.61  E-value=0.00012  Score=56.87  Aligned_cols=89  Identities=10%  Similarity=0.107  Sum_probs=73.6

Q ss_pred             HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhh--hhhHHHHHHhcCCC--ChHHHHHHHHhHHHHHhhhCh
Q psy13759         13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTV--DHLLPLFLSQLKDE--CPEVRLNIISNLDCVNEVIGI   88 (114)
Q Consensus        13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~--~~llP~~~~LL~D~--e~EVR~~a~~~l~~~~~~l~~   88 (114)
                      ....++|.+....+|.++.||.+++..+++++..+|.+...  ..+++.+.+.++|+  ..+||.+++..+..++..+|+
T Consensus       636 ~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~  715 (861)
T d2bpta1         636 YLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA  715 (861)
T ss_dssp             HHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhHhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            45679999999999999999999999999999999876543  57899999999885  578999999999999999987


Q ss_pred             hh--HhhhHhHHHHH
Q psy13759         89 QQ--DVSFKLGQVDR  101 (114)
Q Consensus        89 ~~--i~~~iLP~i~~  101 (114)
                      +.  ..+.++|.+.+
T Consensus       716 ~~~~~l~~~~~~l~~  730 (861)
T d2bpta1         716 DFIPYLNDIMALCVA  730 (861)
T ss_dssp             GGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            53  23555665543

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=7.2e-05  Score=53.38  Aligned_cols=67  Identities=9%  Similarity=0.001  Sum_probs=56.8

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHccccc---cCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHH
Q psy13759         17 SIKRTQDLVADPNQHVKSALASVIMGLSPI---LGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVN   83 (114)
Q Consensus        17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~---lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~   83 (114)
                      .+|.+-+++++.++.||..+|..+..+|..   .-........+|.++++|+++.++||.+++..+.+++
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~   72 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLV   72 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            478999999999999999999999999932   1223333467999999999999999999999999887

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.00026  Score=58.24  Aligned_cols=76  Identities=11%  Similarity=0.095  Sum_probs=58.9

Q ss_pred             HhcCCCCHHHHHHHHHHHHcccc--cc-CcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhHhhhHhHHH
Q psy13759         23 DLVADPNQHVKSALASVIMGLSP--IL-GKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQDVSFKLGQV   99 (114)
Q Consensus        23 ~L~~D~s~~VR~~~a~~l~~la~--~l-g~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i~~~iLP~i   99 (114)
                      .-.+|+.+..|+|++..+...-+  .+ ..+.....+++.++++|+|.++|||..|++.+..+.+.++.+.+ ..+++.+
T Consensus        10 ~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~-~~l~~~L   88 (1207)
T d1u6gc_          10 EKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV-ETIVDTL   88 (1207)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH-HHHHHHH
T ss_pred             HhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhH-HHHHHHH
Confidence            34689999999999988876532  22 23445568999999999999999999999999999999887653 3444444

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.02  E-value=0.0011  Score=48.33  Aligned_cols=72  Identities=6%  Similarity=0.018  Sum_probs=60.6

Q ss_pred             HhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcch----hhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhh
Q psy13759         15 SKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHN----TVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVI   86 (114)
Q Consensus        15 ~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~----~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l   86 (114)
                      ..++|.+..+..+.++.||..++..+..++..-+.+.    ....++|.+.+++++.+++++..++..+..+.+..
T Consensus       313 ~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~  388 (434)
T d1q1sc_         313 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA  388 (434)
T ss_dssp             TTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            4488999889999999999999999999987765543    33467999999999999999999998888877644

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.0014  Score=46.09  Aligned_cols=71  Identities=15%  Similarity=0.124  Sum_probs=57.1

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHccccccC---cchhhhhhHHHHHHhcC-CCChHHHHHHHHhHHHHHhhhC
Q psy13759         17 SIKRTQDLVADPNQHVKSALASVIMGLSPILG---KHNTVDHLLPLFLSQLK-DECPEVRLNIISNLDCVNEVIG   87 (114)
Q Consensus        17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg---~e~~~~~llP~~~~LL~-D~e~EVR~~a~~~l~~~~~~l~   87 (114)
                      +-|.+..+.+++++.||..++..+..++..-+   ........+|.++++++ |++++||..++..+..++..-.
T Consensus        60 ~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~  134 (264)
T d1xqra1          60 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQE  134 (264)
T ss_dssp             HHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccch
Confidence            34556778899999999999999999996433   23344578999999995 7889999999999999886543

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.0019  Score=50.30  Aligned_cols=90  Identities=17%  Similarity=0.166  Sum_probs=70.9

Q ss_pred             HHHhhHHHHHHhcCC-CCHHHHHHHHHHHHccccccCcchhh--hhhHHHHHHhcCCC--ChHHHHHHHHhHHHHHhhhC
Q psy13759         13 FVSKSIKRTQDLVAD-PNQHVKSALASVIMGLSPILGKHNTV--DHLLPLFLSQLKDE--CPEVRLNIISNLDCVNEVIG   87 (114)
Q Consensus        13 ~~~~ilP~l~~L~~D-~s~~VR~~~a~~l~~la~~lg~e~~~--~~llP~~~~LL~D~--e~EVR~~a~~~l~~~~~~l~   87 (114)
                      ....++|.+....++ .++.||.++...++.++...|.+...  ..+++.+.+.++|+  ..+||.+++..+..++..+|
T Consensus       646 ~l~~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~  725 (876)
T d1qgra_         646 YMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIG  725 (876)
T ss_dssp             GHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHh
Confidence            356688888766655 45889999999999999888876553  68999999999886  47899999999999999998


Q ss_pred             hhh--HhhhHhHHHHHH
Q psy13759         88 IQQ--DVSFKLGQVDRT  102 (114)
Q Consensus        88 ~~~--i~~~iLP~i~~l  102 (114)
                      .+.  ..+.++|.+.+.
T Consensus       726 ~~~~~yl~~~l~~l~~~  742 (876)
T d1qgra_         726 GEFKKYLEVVLNTLQQA  742 (876)
T ss_dssp             GGGGGGHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHH
Confidence            752  345566666543

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.67  E-value=0.0028  Score=45.97  Aligned_cols=77  Identities=8%  Similarity=0.096  Sum_probs=62.8

Q ss_pred             HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCc---chhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhh
Q psy13759         14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGK---HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQ   90 (114)
Q Consensus        14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~---e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~   90 (114)
                      ...+++.+..+.++++..||..++..+..++..-..   ......++|.+++++.+.+++||..++..+..++..-+.+.
T Consensus       270 ~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~  349 (434)
T d1q1sc_         270 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQ  349 (434)
T ss_dssp             HTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             hccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHH
Confidence            344778888899999999999999999999853321   12334689999999999999999999999999887766654

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.65  E-value=0.0002  Score=51.76  Aligned_cols=20  Identities=25%  Similarity=0.383  Sum_probs=13.9

Q ss_pred             HHHhcCCCCHHHHHHHHHHH
Q psy13759         21 TQDLVADPNQHVKSALASVI   40 (114)
Q Consensus        21 l~~L~~D~s~~VR~~~a~~l   40 (114)
                      +..|++|+.+.||.++|..+
T Consensus        71 L~~Ll~D~d~~VR~~AA~~L   90 (233)
T d1lrva_          71 LTPLIRDSDEVVRRAVAYRL   90 (233)
T ss_dssp             GGGGTTCSSHHHHHHHHTTS
T ss_pred             HHHHhcCCCHHHHHHHHHHc
Confidence            44677777777777777654

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.0049  Score=43.15  Aligned_cols=72  Identities=8%  Similarity=-0.009  Sum_probs=59.0

Q ss_pred             HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccC---cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759         14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILG---KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV   85 (114)
Q Consensus        14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg---~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~   85 (114)
                      ....+|.+..+.++.+..+|..++..+..++..-+   ........+|.+++++++++++||..++..+..++..
T Consensus       142 ~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~  216 (264)
T d1xqra1         142 RLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD  216 (264)
T ss_dssp             HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence            34478899889999999999999999999874432   2233346899999999999999999999999988753

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.011  Score=41.53  Aligned_cols=70  Identities=20%  Similarity=0.154  Sum_probs=56.6

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHccccccC---cchhhhhhHHHHHHhcC-CCChHHHHHHHHhHHHHHhhh
Q psy13759         17 SIKRTQDLVADPNQHVKSALASVIMGLSPILG---KHNTVDHLLPLFLSQLK-DECPEVRLNIISNLDCVNEVI   86 (114)
Q Consensus        17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg---~e~~~~~llP~~~~LL~-D~e~EVR~~a~~~l~~~~~~l   86 (114)
                      .+|.+.++.+++++.||..++..+.+++..-+   ........+|.++++++ +.++++|..++..+..++..-
T Consensus        45 ~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~  118 (457)
T d1xm9a1          45 GICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD  118 (457)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS
T ss_pred             cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhh
Confidence            68999999999999999999999999984322   22333456888888775 578999999999999998754

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.12  E-value=0.019  Score=45.57  Aligned_cols=61  Identities=13%  Similarity=0.126  Sum_probs=53.4

Q ss_pred             CCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759         26 ADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG   87 (114)
Q Consensus        26 ~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~   87 (114)
                      .++...+|..++..++..++...++. ...++|.++++|+|++..||..|+..+..++....
T Consensus       468 ~~~~~~lr~~~~~~i~~~~~~~~~~~-~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~  528 (959)
T d1wa5c_         468 NIPHIILRVDAIKYIYTFRNQLTKAQ-LIELMPILATFLQTDEYVVYTYAAITIEKILTIRE  528 (959)
T ss_dssp             SCSCHHHHHHHHHHHHHTGGGSCHHH-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred             CCchHHHHHHHHHHHHHHHhhccHHH-HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhc
Confidence            56778899999999999998877654 46899999999999999999999999999987654

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.012  Score=44.18  Aligned_cols=70  Identities=10%  Similarity=-0.029  Sum_probs=59.0

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHccccccC---cchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhh
Q psy13759         16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILG---KHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEV   85 (114)
Q Consensus        16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg---~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~   85 (114)
                      ..+|.+-.++++++..||..++..+.+++..-+   +.......+|.++.+++++++++|..++..+..++..
T Consensus       101 g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~  173 (529)
T d1jdha_         101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG  173 (529)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhh
Confidence            468999999999999999999999999985433   2334457899999999999999999999999888753

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.76  E-value=0.011  Score=44.26  Aligned_cols=88  Identities=10%  Similarity=-0.028  Sum_probs=68.2

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHccccccC--cc-hhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhCh---h
Q psy13759         16 KSIKRTQDLVADPNQHVKSALASVIMGLSPILG--KH-NTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGI---Q   89 (114)
Q Consensus        16 ~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg--~e-~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~---~   89 (114)
                      .++|.+..++++.+..||..++..++.++..-.  .+ .....++|.++.++++..++++..++..+..++..-.+   .
T Consensus       162 g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~  241 (503)
T d1wa5b_         162 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDW  241 (503)
T ss_dssp             TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCH
T ss_pred             CChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHH
Confidence            378999999999999999999999999884322  12 23346899999999999999999999999999865432   2


Q ss_pred             hHhhhHhHHHHHHH
Q psy13759         90 QDVSFKLGQVDRTS  103 (114)
Q Consensus        90 ~i~~~iLP~i~~l~  103 (114)
                      .....++|.+.++.
T Consensus       242 ~~~~~~l~~l~~~l  255 (503)
T d1wa5b_         242 SVVSQALPTLAKLI  255 (503)
T ss_dssp             HHHGGGHHHHHHHT
T ss_pred             HHHHHHHHHHHHHh
Confidence            34566777766543

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.69  E-value=0.029  Score=41.78  Aligned_cols=92  Identities=12%  Similarity=-0.033  Sum_probs=69.0

Q ss_pred             hHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCc---chhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhC
Q psy13759         11 GNFVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGK---HNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIG   87 (114)
Q Consensus        11 ~~~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~---e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~   87 (114)
                      ......++|.+..+..+.++.++..++..+..++..-..   ......++|.+..+++.++++++..++..+..++..-+
T Consensus       241 ~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~  320 (503)
T d1wa5b_         241 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND  320 (503)
T ss_dssp             HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHH
Confidence            345667999999999999999999999999999854332   23345789999999999999999999999988875332


Q ss_pred             hh---hHhhhHhHHHHHH
Q psy13759         88 IQ---QDVSFKLGQVDRT  102 (114)
Q Consensus        88 ~~---~i~~~iLP~i~~l  102 (114)
                      ..   .+...++|.+..+
T Consensus       321 ~~~~~~~~~~~l~~l~~l  338 (503)
T d1wa5b_         321 LQTQVVINAGVLPALRLL  338 (503)
T ss_dssp             HHHHHHHHTTHHHHHHHH
T ss_pred             HHHHhhhccchHHHHHHH
Confidence            21   1223455655443

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.018  Score=43.21  Aligned_cols=71  Identities=15%  Similarity=0.108  Sum_probs=61.4

Q ss_pred             HHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHh
Q psy13759         14 VSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNE   84 (114)
Q Consensus        14 ~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~   84 (114)
                      ....+|.+..+.++.+.+++..++..+..++............+|.+++++++++++||..++..+..++.
T Consensus       225 ~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~  295 (529)
T d1jdha_         225 EAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC  295 (529)
T ss_dssp             HTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             hhhhhhhHHHHhcccchhhhhhhhhHHHhccccccchhhhhhcchhhhhhcccccHHHHHHHHHHHHhhcc
Confidence            34478888999999999999999999999887766666667899999999999999999999988887763

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.35  E-value=0.28  Score=38.45  Aligned_cols=69  Identities=7%  Similarity=0.023  Sum_probs=56.3

Q ss_pred             HHHhhHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhh
Q psy13759         13 FVSKSIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVI   86 (114)
Q Consensus        13 ~~~~ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l   86 (114)
                      +++.+++.+    .+++..+|..+|..+..++..-+++.+ .+++|.+.++++.+++..+.+++..+..+++..
T Consensus        86 Ik~~ll~~l----~~~~~~ir~~l~~~i~~I~~~d~p~~W-p~ll~~l~~~l~s~~~~~~~~~L~~l~~i~k~~  154 (959)
T d1wa5c_          86 IKKEIVPLM----ISLPNNLQVQIGEAISSIADSDFPDRW-PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRW  154 (959)
T ss_dssp             HHHHHHHHH----HHSCHHHHHHHHHHHHHHHHHHSTTTC-TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHH----hCCcHHHHHHHHHHHHHHHHHhCcccc-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            344445444    356789999999999999988777665 479999999999999999999999998888754

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=92.91  E-value=0.097  Score=38.66  Aligned_cols=53  Identities=13%  Similarity=0.145  Sum_probs=42.9

Q ss_pred             CCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHH
Q psy13759         27 DPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCV   82 (114)
Q Consensus        27 D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~   82 (114)
                      +.+.+||.++...+..++... +..+.+.++|+|.+  .++.+|||.+|...+-+-
T Consensus       221 ~~~~~vR~aAi~Alr~~~~~~-p~~v~~~l~~i~~n--~~e~~EvRiaA~~~lm~t  273 (336)
T d1lsha1         221 EYSTRVQAEAIMALRNIAKRD-PRKVQEIVLPIFLN--VAIKSELRIRSCIVFFES  273 (336)
T ss_dssp             CSCHHHHHHHHHTTTTGGGTC-HHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHHT
T ss_pred             cccHHHHHHHHHHHHHhhhcC-cHHHHHHHHHHHcC--CCCChHHHHHHHHHHHhc
Confidence            447899999999999988764 45567788888887  678899999998887653

>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: BC3264-like
domain: Hypothetical protein EF3068
species: Enterococcus faecalis [TaxId: 1351]

Probab=80.54  E-value=3  Score=28.14  Aligned_cols=70  Identities=13%  Similarity=-0.044  Sum_probs=47.1

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHccccccCcchhhhhhHHHHHHhcCCCChHHHHHHHHhHHHHHhhhChhhH
Q psy13759         17 SIKRTQDLVADPNQHVKSALASVIMGLSPILGKHNTVDHLLPLFLSQLKDECPEVRLNIISNLDCVNEVIGIQQD   91 (114)
Q Consensus        17 ilP~l~~L~~D~s~~VR~~~a~~l~~la~~lg~e~~~~~llP~~~~LL~D~e~EVR~~a~~~l~~~~~~l~~~~i   91 (114)
                      ..+.+...+.|.+.-+|.++.-..  +  ...++...+.+++++..++.|++.-||+++.-.|..+++. .|+.+
T Consensus       120 ~~~~l~~w~~s~~~w~rR~aiv~~--l--~~~~~~~~~~~~~~~~~~~~d~e~~i~kAigW~Lre~~k~-~p~~v  189 (213)
T d2b6ca1         120 LPTIFALFYGAENFWNRRVALNLQ--L--MLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT-NPQWV  189 (213)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHTT--T--TCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT-CHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHH--H--HHHHcccHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH-CHHHH
Confidence            456666667766555555432222  1  1233334567889999999999999999999999988765 44443