Psyllid ID: psy13775

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MEWNVRLLPQKAGYHYSNFTARIGLNKSLMLSRRLPILLGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFTG
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccEEEEcccccccHHHHHcccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mewnvrllpqkagyhysnfTARIGLNKSLmlsrrlpillgqyvpMAIEEQVAVIYCGvrghldkldpakiTTFEKEFLAHIKSSERGLLESIKKegkitedtdAKLKTVVTNFLANFTG
Flexible Loop (DISEMBL)
mewnvrllpqkagyhysNFTARIGLNKSLMLSRRLPILLGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAhiksserglleSIKKegkitedtdaklkTVVTNFLANFTG
Low Complexity Region (SEG)
MEWNVRLLPQKAGYHYSNFTARIGLNKSLMLSRRLPILLGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFTG
Disordered region (IsUnstruct)
***NVRLLPQKAGYHYSNFTARIGLNKSLMLSRRLPILLGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIK**********************KLKTVVTNFLA****
Disordered Region (DISOPRED)
*EWNVRLLPQKAGYHYSNFTARIGLNKSLMLSRRLPILLGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT*
Disordered Region (DISEMBL)
MEWNVRLLPQKAGYHYSNFTARIGLNKSLMLSRRLPILLGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFTG
Disordered Region (DISPRO)
*EWNVRLLPQKAGYHYSNFTARIGLNKSLMLSRRLPILLGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEWNVRLLPQKAGYHYSNFTARIGLNKSLMLSRRLPILLGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFTG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	119	2.2.26 [Sep-21-2011]
P35381	552	ATP synthase subunit alph	yes	N/A	0.873	0.188	0.592	2e-30
Q9XXK1	538	ATP synthase subunit alph	no	N/A	0.857	0.189	0.556	3e-27
P19483	553	ATP synthase subunit alph	yes	N/A	0.857	0.184	0.566	2e-26
A5A6H5	553	ATP synthase subunit alph	yes	N/A	0.857	0.184	0.566	3e-26
P25705	553	ATP synthase subunit alph	yes	N/A	0.857	0.184	0.566	3e-26
Q5R546	553	ATP synthase subunit alph	yes	N/A	0.857	0.184	0.566	3e-26
P08428	545	ATP synthase subunit alph	N/A	N/A	0.857	0.187	0.556	4e-26
P15999	553	ATP synthase subunit alph	yes	N/A	0.857	0.184	0.566	4e-26
Q03265	553	ATP synthase subunit alph	yes	N/A	0.857	0.184	0.566	5e-26
A7HT50	509	ATP synthase subunit alph	yes	N/A	0.865	0.202	0.420	1e-16

>sp|P35381|ATPA_DROME ATP synthase subunit alpha, mitochondrial OS=Drosophila melanogaster GN=blw PE=1 SV=2

 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/108 (59%), Positives = 82/108 (75%), Gaps = 4/108 (3%)

Query: 16  YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
           ++ F + +      +L+R  RL  LL  GQYVPMAIE+QVAVIYCGVRGHLDK+DPAKIT
Sbjct: 445 FAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEDQVAVIYCGVRGHLDKMDPAKIT 504

Query: 72  TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFTG 119
            FEKEFL HIK+SE+ LL++I K+G I+E +DAKLK +V  F++ F G
Sbjct: 505 KFEKEFLQHIKTSEQALLDTIAKDGAISEASDAKLKDIVAKFMSTFQG 552

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits. Subunit alpha does not bear the catalytic high-affinity ATP-binding sites.
Drosophila melanogaster (taxid: 7227)

>sp|Q9XXK1|ATPA_CAEEL ATP synthase subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=H28O16.1 PE=1 SV=1

 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 59/106 (55%), Positives = 81/106 (76%), Gaps = 4/106 (3%)

Query: 16  YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
           ++ F + +  +   +L+R  RL  LL  GQYVPM IEEQV VIY GV+G+LDK+DP+ IT
Sbjct: 431 FAQFGSDLDASTQQLLNRGVRLTELLKQGQYVPMGIEEQVGVIYAGVKGYLDKVDPSAIT 490

Query: 72  TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
            FEKEFLAH++SS++ LL++I++EG+I+  TDA+LK VV NFLA F
Sbjct: 491 KFEKEFLAHLRSSQQALLKTIREEGQISPQTDAQLKDVVVNFLATF 536

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits. Subunit alpha does not bear the catalytic high-affinity ATP-binding sites.

Caenorhabditis elegans (taxid: 6239)

>sp|P19483|ATPA_BOVIN ATP synthase subunit alpha, mitochondrial OS=Bos taurus GN=ATP5A1 PE=1 SV=1

 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 77/106 (72%), Gaps = 4/106 (3%)

Query: 16  YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
           ++ F + +      +LSR  RL  LL  GQY PMAIEEQVAVIY GVRG+LDKL+P+KIT
Sbjct: 446 FAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKIT 505

Query: 72  TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
            FE  FL+H+ S  + LL  I+ +GKI+E++DAKLK +VTNFLA F
Sbjct: 506 KFENAFLSHVISQHQALLSKIRTDGKISEESDAKLKEIVTNFLAGF 551

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits. Subunit alpha does not bear the catalytic high-affinity ATP-binding sites.

Bos taurus (taxid: 9913)

>sp|A5A6H5|ATPA_PANTR ATP synthase subunit alpha, mitochondrial OS=Pan troglodytes GN=ATP5A1 PE=2 SV=1

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 77/106 (72%), Gaps = 4/106 (3%)

Query: 16  YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
           ++ F + +      +LSR  RL  LL  GQY PMAIEEQVAVIY GVRG+LDKL+P+KIT
Sbjct: 446 FAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKIT 505

Query: 72  TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
            FE  FL+H+ S  + LL +I+ +GKI+E +DAKLK +VTNFLA F
Sbjct: 506 KFENAFLSHVVSQHQALLGTIRADGKISEQSDAKLKEIVTNFLAGF 551

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits. Subunit alpha does not bear the catalytic high-affinity ATP-binding sites.

Pan troglodytes (taxid: 9598)

>sp|P25705|ATPA_HUMAN ATP synthase subunit alpha, mitochondrial OS=Homo sapiens GN=ATP5A1 PE=1 SV=1

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 77/106 (72%), Gaps = 4/106 (3%)

Query: 16  YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
           ++ F + +      +LSR  RL  LL  GQY PMAIEEQVAVIY GVRG+LDKL+P+KIT
Sbjct: 446 FAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKIT 505

Query: 72  TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
            FE  FL+H+ S  + LL +I+ +GKI+E +DAKLK +VTNFLA F
Sbjct: 506 KFENAFLSHVVSQHQALLGTIRADGKISEQSDAKLKEIVTNFLAGF 551

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits. Subunit alpha does not bear the catalytic high-affinity ATP-binding sites.

Homo sapiens (taxid: 9606)

>sp|Q5R546|ATPA_PONAB ATP synthase subunit alpha, mitochondrial OS=Pongo abelii GN=ATP5A1 PE=2 SV=1

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 77/106 (72%), Gaps = 4/106 (3%)

Query: 16  YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
           ++ F + +      +LSR  RL  LL  GQY PMAIEEQVAVIY GVRG+LDKL+P+KIT
Sbjct: 446 FAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKIT 505

Query: 72  TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
            FE  FL+H+ S  + LL +I+ +GKI+E +DAKLK +VTNFLA F
Sbjct: 506 KFENAFLSHVVSQHQALLGTIRADGKISEQSDAKLKEIVTNFLAGF 551

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits. Subunit alpha does not bear the catalytic high-affinity ATP-binding sites.

Pongo abelii (taxid: 9601)

>sp|P08428|ATPA_XENLA ATP synthase subunit alpha, mitochondrial OS=Xenopus laevis GN=atp5a PE=2 SV=1

 Score =  116 bits (291), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 59/106 (55%), Positives = 76/106 (71%), Gaps = 4/106 (3%)

Query: 16  YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
           ++ F + +      +L+R  RL  LL  GQYVPMAIEEQV VIY GVRGHLDK++P+KIT
Sbjct: 438 FAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVTVIYAGVRGHLDKMEPSKIT 497

Query: 72  TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
            FE  FLAH+KS  + LL +I+ +GKI+E  DAKLK +V NFL+ F
Sbjct: 498 KFESAFLAHVKSQHQELLATIRADGKISEQADAKLKEIVLNFLSTF 543

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits. Subunit alpha does not bear the catalytic high-affinity ATP-binding sites.

Xenopus laevis (taxid: 8355)

>sp|P15999|ATPA_RAT ATP synthase subunit alpha, mitochondrial OS=Rattus norvegicus GN=Atp5a1 PE=1 SV=2

 Score =  116 bits (291), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 77/106 (72%), Gaps = 4/106 (3%)

Query: 16  YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
           ++ F + +      +LSR  RL  LL  GQY PMAIEEQVAVIY GVRG+LDKL+P+KIT
Sbjct: 446 FAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKIT 505

Query: 72  TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
            FE  FL+H+ S  + LL +I+ +GKI+E +DAKLK +VTNFLA F
Sbjct: 506 KFESAFLSHVVSQHQSLLGNIRSDGKISEQSDAKLKEIVTNFLAGF 551

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits. Subunit alpha does not bear the catalytic high-affinity ATP-binding sites.

Rattus norvegicus (taxid: 10116)

>sp|Q03265|ATPA_MOUSE ATP synthase subunit alpha, mitochondrial OS=Mus musculus GN=Atp5a1 PE=1 SV=1

 Score =  116 bits (290), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 77/106 (72%), Gaps = 4/106 (3%)

Query: 16  YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
           ++ F + +      +LSR  RL  LL  GQY PMAIEEQVAVIY GVRG+LDKL+P+KIT
Sbjct: 446 FAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKIT 505

Query: 72  TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
            FE  FL+H+ S  + LL +I+ +GKI+E +DAKLK +VTNFLA F
Sbjct: 506 KFENAFLSHVISQHQSLLGNIRSDGKISEQSDAKLKEIVTNFLAGF 551

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits. Subunit alpha does not bear the catalytic high-affinity ATP-binding sites.

Mus musculus (taxid: 10090)

>sp|A7HT50|ATPA_PARL1 ATP synthase subunit alpha OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=atpA PE=3 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 69/107 (64%), Gaps = 4/107 (3%)

Query: 16  YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
           ++ F + +      +L+R  RL  LL  GQ+ P+ +EEQV VIY GV G+LDKL  A + 
Sbjct: 403 FAQFGSDLDAATQRLLNRGARLTELLKQGQFSPLKVEEQVVVIYAGVNGYLDKLPVADVG 462

Query: 72  TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT 118
            +E++ L +I+SS  G+L++I+ E +I+ DT+AKLK+ V NF   F 
Sbjct: 463 RYEQDLLRNIRSSHPGILDAIRSEKQISADTEAKLKSAVENFSKAFA 509

Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.

Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) (taxid: 402881)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 1

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
124487982	459	putative mitochondrial ATP synthase alph	0.865	0.224	0.710	2e-34
193666827	551	PREDICTED: ATP synthase subunit alpha, m	0.857	0.185	0.669	6e-32
52630965	551	putative mitochondrial ATP synthase alph	0.857	0.185	0.669	7e-32
195430526	552	GK21455 [Drosophila willistoni] gi|19415	0.873	0.188	0.620	2e-30
242012578	552	ATP synthase subunit alpha, putative [Pe	0.873	0.188	0.620	4e-30
332374868	551	unknown [Dendroctonus ponderosae]	0.873	0.188	0.620	4e-30
195029787	550	GH19785 [Drosophila grimshawi] gi|193903	0.873	0.189	0.620	4e-30
312370923	551	hypothetical protein AND_22861 [Anophele	0.873	0.188	0.583	8e-30
289742845	552	F0F1-type ATP synthase alpha subunit [Gl	0.873	0.188	0.620	2e-29
58385536	551	AGAP005134-PA [Anopheles gambiae str. PE	0.865	0.186	0.588	2e-29

>gi|124487982|gb|ABN12074.1| putative mitochondrial ATP synthase alpha subunit precursor [Maconellicoccus hirsutus]

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 76/107 (71%), Positives = 86/107 (80%), Gaps = 4/107 (3%)

Query: 16  YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
           ++ F + +      +L+R  RL  LL  GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT
Sbjct: 352 FAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 411

Query: 72  TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT 118
            FEKEFL H+K+SE+ LL+ I KEGKITE TDAKLKTVVTNFLANFT
Sbjct: 412 AFEKEFLQHVKTSEKALLQDIAKEGKITEATDAKLKTVVTNFLANFT 458

Source: Maconellicoccus hirsutus

Species: Maconellicoccus hirsutus

Genus: Maconellicoccus

Family: Pseudococcidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193666827|ref|XP_001943349.1| PREDICTED: ATP synthase subunit alpha, mitochondrial-like [Acyrthosiphon pisum]

 Score =  141 bits (355), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 71/106 (66%), Positives = 86/106 (81%), Gaps = 4/106 (3%)

Query: 16  YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
           ++ F + +      +L+R  RL  LL  GQYVPMAIEEQVAV+YCGVRG LDK++P+KIT
Sbjct: 444 FAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVVYCGVRGFLDKMEPSKIT 503

Query: 72  TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
           TFEKEFL HIK+SE+ LLESI KEGKI++DTDAKLKTVV NFLA+F
Sbjct: 504 TFEKEFLQHIKTSEKSLLESIAKEGKISDDTDAKLKTVVNNFLASF 549

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|52630965|gb|AAU84946.1| putative mitochondrial ATP synthase alpha subunit precursor [Toxoptera citricida]

 Score =  140 bits (354), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 71/106 (66%), Positives = 87/106 (82%), Gaps = 4/106 (3%)

Query: 16  YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
           ++ F + +      +L+R  RL  LL  GQYVPMAIEEQVAV+YCGVRG LDK++P+KIT
Sbjct: 444 FAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVVYCGVRGFLDKMEPSKIT 503

Query: 72  TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
           TFEKEFL HIK+SE+ LLESI KEGKIT++TDAKLK+VVTNFLA+F
Sbjct: 504 TFEKEFLQHIKTSEKSLLESIAKEGKITDETDAKLKSVVTNFLASF 549

Source: Toxoptera citricida

Species: Toxoptera citricida

Genus: Toxoptera

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195430526|ref|XP_002063305.1| GK21455 [Drosophila willistoni] gi|194159390|gb|EDW74291.1| GK21455 [Drosophila willistoni]

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/108 (62%), Positives = 84/108 (77%), Gaps = 4/108 (3%)

Query: 16  YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
           ++ F + +      +L+R  RL  LL  GQYVPM+IE+QVAVIYCGVRGHLDK+DPAKIT
Sbjct: 445 FAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMSIEDQVAVIYCGVRGHLDKMDPAKIT 504

Query: 72  TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFTG 119
            FEKEFL HIK++E+GLL++I KEGKI++  DAKLK VVT F+A F G
Sbjct: 505 KFEKEFLQHIKTTEQGLLDTIAKEGKISDAADAKLKDVVTKFMATFQG 552

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242012578|ref|XP_002427008.1| ATP synthase subunit alpha, putative [Pediculus humanus corporis] gi|212511246|gb|EEB14270.1| ATP synthase subunit alpha, putative [Pediculus humanus corporis]

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/108 (62%), Positives = 84/108 (77%), Gaps = 4/108 (3%)

Query: 16  YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
           ++ F + +      +L+R  RL  LL  GQYVPMAIEEQVAVIYCGVRGHLDKLDP+KIT
Sbjct: 445 FAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPSKIT 504

Query: 72  TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFTG 119
            FEKEFLAH+KSS + LL++I KE KI+E  DAKLK +VT+F+ +F+G
Sbjct: 505 AFEKEFLAHVKSSHKDLLDTIAKENKISEAVDAKLKKIVTDFIGSFSG 552

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332374868|gb|AEE62575.1| unknown [Dendroctonus ponderosae]

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/108 (62%), Positives = 84/108 (77%), Gaps = 4/108 (3%)

Query: 16  YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
           ++ F + +      +L+R  RL  LL  GQYVPMAIEEQVA+IYCGVRGHLDK+DP+KIT
Sbjct: 444 FAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAIIYCGVRGHLDKVDPSKIT 503

Query: 72  TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFTG 119
            FEK+F  HIKSS + +L+SI KEGKIT+ TDA+LK VV +FLANF+G
Sbjct: 504 VFEKQFSEHIKSSHQSILQSIAKEGKITDSTDAELKKVVQDFLANFSG 551

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195029787|ref|XP_001987753.1| GH19785 [Drosophila grimshawi] gi|193903753|gb|EDW02620.1| GH19785 [Drosophila grimshawi]

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/108 (62%), Positives = 83/108 (76%), Gaps = 4/108 (3%)

Query: 16  YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
           ++ F + +      +L+R  RL  LL  GQYVPMAIE+QVAVIYCGVRGHLDK+DPAKIT
Sbjct: 443 FAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEDQVAVIYCGVRGHLDKMDPAKIT 502

Query: 72  TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFTG 119
            FEKEFL HIK+SE+GLL+SI KEG+I+   DAKLK +VT F++ F G
Sbjct: 503 KFEKEFLQHIKTSEQGLLDSIAKEGQISPAVDAKLKDIVTKFMSTFQG 550

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312370923|gb|EFR19222.1| hypothetical protein AND_22861 [Anopheles darlingi]

 Score =  134 bits (337), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 63/108 (58%), Positives = 86/108 (79%), Gaps = 4/108 (3%)

Query: 16  YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
           ++ F + +      +L+R  RL  LL  GQYVPMAIEEQVAVIYCGVRG+LDK+DP+KIT
Sbjct: 444 FAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGYLDKMDPSKIT 503

Query: 72  TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFTG 119
            FE+EFLAH+K++E+ LL+ I  EGKI++D DAKLK++VT+F++ F+G
Sbjct: 504 KFEREFLAHVKTNEKALLQQIASEGKISDDADAKLKSIVTSFMSTFSG 551

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289742845|gb|ADD20170.1| F0F1-type ATP synthase alpha subunit [Glossina morsitans morsitans]

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 67/108 (62%), Positives = 81/108 (75%), Gaps = 4/108 (3%)

Query: 16  YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
           ++ F + +      +L+R  RL  LL  GQYVPM+IE+QVAVIYCGVRGHLDK+DPAKIT
Sbjct: 445 FAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMSIEDQVAVIYCGVRGHLDKMDPAKIT 504

Query: 72  TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFTG 119
            FEKEFL HIK+SE+ LL  I +EGKI+E  DAKLK VVT FL+ F G
Sbjct: 505 KFEKEFLQHIKTSEQSLLSQIAQEGKISEGADAKLKEVVTKFLSTFQG 552

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|58385536|ref|XP_314018.2| AGAP005134-PA [Anopheles gambiae str. PEST] gi|55240520|gb|EAA44524.2| AGAP005134-PA [Anopheles gambiae str. PEST]

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/107 (58%), Positives = 85/107 (79%), Gaps = 4/107 (3%)

Query: 16  YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
           ++ F + +      +L+R  RL  LL  GQYVPMAIEEQVAVIYCGVRG+LDK+DP+KIT
Sbjct: 444 FAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGYLDKMDPSKIT 503

Query: 72  TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT 118
            FE+EFLAH+K++E+ LL+ I  EGKI++D DAKLK+VVT+F++ F+
Sbjct: 504 KFEREFLAHVKTNEKALLQQIASEGKISDDADAKLKSVVTSFMSTFS 550

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
FB|FBgn0011211	552	blw "bellwether" [Drosophila m	0.781	0.168	0.642	4.1e-27
UNIPROTKB|K7ENP3	531	ATP5A1 "ATP synthase subunit a	0.857	0.192	0.566	6.2e-25
UNIPROTKB|F1NI22	553	ATP5A1W "ATP synthase subunit	0.764	0.164	0.623	6.5e-25
UNIPROTKB|F1NGA2	555	ATP5A1W "ATP synthase subunit	0.764	0.163	0.623	6.6e-25
UNIPROTKB|P25705	553	ATP5A1 "ATP synthase subunit a	0.857	0.184	0.566	8.1e-25
UNIPROTKB|A5A6H5	553	ATP5A1 "ATP synthase subunit a	0.857	0.184	0.566	8.1e-25
UNIPROTKB|Q5R546	553	ATP5A1 "ATP synthase subunit a	0.857	0.184	0.566	8.1e-25
ZFIN|ZDB-GENE-060201-1	551	atp5a1 "ATP synthase, H+ trans	0.764	0.165	0.591	1.1e-24
WB|WBGene00010419	538	H28O16.1d.6 [Caenorhabditis el	0.857	0.189	0.556	1.6e-24
UNIPROTKB|F1RPS8	533	ATP5A1 "ATP synthase subunit a	0.857	0.191	0.575	2e-24

FB|FBgn0011211 blw "bellwether" [Drosophila melanogaster (taxid:7227)]

 Score = 310 (114.2 bits), Expect = 4.1e-27, P = 4.1e-27
 Identities = 61/95 (64%), Positives = 76/95 (80%)

Query:    25 LNKSLMLSRRLPILLGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSS 84
             LN+ + L+  L    GQYVPMAIE+QVAVIYCGVRGHLDK+DPAKIT FEKEFL HIK+S
Sbjct:   460 LNRGVRLTELLK--QGQYVPMAIEDQVAVIYCGVRGHLDKMDPAKITKFEKEFLQHIKTS 517

Query:    85 ERGLLESIKKEGKITEDTDAKLKTVVTNFLANFTG 119
             E+ LL++I K+G I+E +DAKLK +V  F++ F G
Sbjct:   518 EQALLDTIAKDGAISEASDAKLKDIVAKFMSTFQG 552

GO:0007286 "spermatid development" evidence=IMP

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=ISS;NAS

GO:0040007 "growth" evidence=IMP

GO:0015992 "proton transport" evidence=ISS;NAS

GO:0000275 "mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)" evidence=ISS

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0005811 "lipid particle" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

UNIPROTKB|K7ENP3 ATP5A1 "ATP synthase subunit alpha" [Homo sapiens (taxid:9606)]

 Score = 279 (103.3 bits), Expect = 6.2e-25, Sum P(2) = 6.2e-25
 Identities = 60/106 (56%), Positives = 77/106 (72%)

Query:    16 YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
             ++ F + +      +LSR  RL  LL  GQY PMAIEEQVAVIY GVRG+LDKL+P+KIT
Sbjct:   424 FAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKIT 483

Query:    72 TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
              FE  FL+H+ S  + LL +I+ +GKI+E +DAKLK +VTNFLA F
Sbjct:   484 KFENAFLSHVVSQHQALLGTIRADGKISEQSDAKLKEIVTNFLAGF 529

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

UNIPROTKB|F1NI22 ATP5A1W "ATP synthase subunit alpha" [Gallus gallus (taxid:9031)]

 Score = 290 (107.1 bits), Expect = 6.5e-25, P = 6.5e-25
 Identities = 58/93 (62%), Positives = 72/93 (77%)

Query:    25 LNKSLMLSRRLPILLGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSS 84
             LN+ + L+  L    GQYVPMAIEEQVAVIY GVRGHLDKL+P+KIT FE  FLAH+ S 
Sbjct:   461 LNRGVRLTELLK--QGQYVPMAIEEQVAVIYAGVRGHLDKLEPSKITKFESAFLAHVLSQ 518

Query:    85 ERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
              + LL +I+ EGKI++ T+AKLK +VTNFL+ F
Sbjct:   519 HQALLSTIRTEGKISDQTEAKLKEIVTNFLSTF 551

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

UNIPROTKB|F1NGA2 ATP5A1W "ATP synthase subunit alpha" [Gallus gallus (taxid:9031)]

 Score = 290 (107.1 bits), Expect = 6.6e-25, P = 6.6e-25
 Identities = 58/93 (62%), Positives = 72/93 (77%)

Query:    25 LNKSLMLSRRLPILLGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSS 84
             LN+ + L+  L    GQYVPMAIEEQVAVIY GVRGHLDKL+P+KIT FE  FLAH+ S 
Sbjct:   463 LNRGVRLTELLK--QGQYVPMAIEEQVAVIYAGVRGHLDKLEPSKITKFESAFLAHVLSQ 520

Query:    85 ERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
              + LL +I+ EGKI++ T+AKLK +VTNFL+ F
Sbjct:   521 HQALLSTIRTEGKISDQTEAKLKEIVTNFLSTF 553

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

UNIPROTKB|P25705 ATP5A1 "ATP synthase subunit alpha, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 279 (103.3 bits), Expect = 8.1e-25, Sum P(2) = 8.1e-25
 Identities = 60/106 (56%), Positives = 77/106 (72%)

Query:    16 YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
             ++ F + +      +LSR  RL  LL  GQY PMAIEEQVAVIY GVRG+LDKL+P+KIT
Sbjct:   446 FAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKIT 505

Query:    72 TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
              FE  FL+H+ S  + LL +I+ +GKI+E +DAKLK +VTNFLA F
Sbjct:   506 KFENAFLSHVVSQHQALLGTIRADGKISEQSDAKLKEIVTNFLAGF 551

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0001937 "negative regulation of endothelial cell proliferation" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0043499 "eukaryotic cell surface binding" evidence=IDA

GO:0006754 "ATP biosynthetic process" evidence=IC;NAS

GO:0005524 "ATP binding" evidence=ISS

GO:0006629 "lipid metabolic process" evidence=ISS

GO:0009790 "embryo development" evidence=ISS

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=ISS

GO:0005739 "mitochondrion" evidence=NAS

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IDA

GO:0016887 "ATPase activity" evidence=IDA

GO:0042288 "MHC class I protein binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0042776 "mitochondrial ATP synthesis coupled proton transport" evidence=IC;TAS

GO:0022857 "transmembrane transporter activity" evidence=IC

GO:0008180 "signalosome" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0006200 "ATP catabolic process" evidence=IDA

UNIPROTKB|A5A6H5 ATP5A1 "ATP synthase subunit alpha, mitochondrial" [Pan troglodytes (taxid:9598)]

 Score = 279 (103.3 bits), Expect = 8.1e-25, Sum P(2) = 8.1e-25
 Identities = 60/106 (56%), Positives = 77/106 (72%)

Query:    16 YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
             ++ F + +      +LSR  RL  LL  GQY PMAIEEQVAVIY GVRG+LDKL+P+KIT
Sbjct:   446 FAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKIT 505

Query:    72 TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
              FE  FL+H+ S  + LL +I+ +GKI+E +DAKLK +VTNFLA F
Sbjct:   506 KFENAFLSHVVSQHQALLGTIRADGKISEQSDAKLKEIVTNFLAGF 551

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

UNIPROTKB|Q5R546 ATP5A1 "ATP synthase subunit alpha, mitochondrial" [Pongo abelii (taxid:9601)]

 Score = 279 (103.3 bits), Expect = 8.1e-25, Sum P(2) = 8.1e-25
 Identities = 60/106 (56%), Positives = 77/106 (72%)

Query:    16 YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
             ++ F + +      +LSR  RL  LL  GQY PMAIEEQVAVIY GVRG+LDKL+P+KIT
Sbjct:   446 FAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKIT 505

Query:    72 TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
              FE  FL+H+ S  + LL +I+ +GKI+E +DAKLK +VTNFLA F
Sbjct:   506 KFENAFLSHVVSQHQALLGTIRADGKISEQSDAKLKEIVTNFLAGF 551

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

ZFIN|ZDB-GENE-060201-1 atp5a1 "ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle" [Danio rerio (taxid:7955)]

 Score = 273 (101.2 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
 Identities = 55/93 (59%), Positives = 71/93 (76%)

Query:    25 LNKSLMLSRRLPILLGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSS 84
             LN+ + L+  L    GQY PMAIEEQVAVIY GVRGHLDK++P+KIT FEK FL H+ S 
Sbjct:   460 LNRGVRLTELLK--QGQYSPMAIEEQVAVIYAGVRGHLDKMEPSKITKFEKAFLQHVISQ 517

Query:    85 ERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
              + LL +I+ +GKI+E +DAKLK +V NFL++F
Sbjct:   518 HQDLLAAIRSDGKISEASDAKLKEIVLNFLSSF 550

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006754 "ATP biosynthetic process" evidence=IEA

WB|WBGene00010419 H28O16.1d.6 [Caenorhabditis elegans (taxid:6239)]

 Score = 286 (105.7 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 59/106 (55%), Positives = 81/106 (76%)

Query:    16 YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
             ++ F + +  +   +L+R  RL  LL  GQYVPM IEEQV VIY GV+G+LDK+DP+ IT
Sbjct:   431 FAQFGSDLDASTQQLLNRGVRLTELLKQGQYVPMGIEEQVGVIYAGVKGYLDKVDPSAIT 490

Query:    72 TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
              FEKEFLAH++SS++ LL++I++EG+I+  TDA+LK VV NFLA F
Sbjct:   491 KFEKEFLAHLRSSQQALLKTIREEGQISPQTDAQLKDVVVNFLATF 536

GO:0005524 "ATP binding" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|F1RPS8 ATP5A1 "ATP synthase subunit alpha" [Sus scrofa (taxid:9823)]

 Score = 285 (105.4 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 61/106 (57%), Positives = 77/106 (72%)

Query:    16 YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
             ++ F + +      +LSR  RL  LL  GQY PMAIEEQVAVIY GVRG+LDKL+P+KIT
Sbjct:   426 FAQFGSDLDAATQQLLSRGVRLTELLKQGQYAPMAIEEQVAVIYAGVRGYLDKLEPSKIT 485

Query:    72 TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
              FE  FL+H+ S  + LL  I+ +GKI+E+TDAKLK +VTNFLA F
Sbjct:   486 KFENAFLSHVISQHQALLGKIRADGKISEETDAKLKEIVTNFLAGF 531

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0043499 "eukaryotic cell surface binding" evidence=IEA

GO:0042288 "MHC class I protein binding" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0001937 "negative regulation of endothelial cell proliferation" evidence=IEA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P25705	ATPA_HUMAN	No assigned EC number	0.5660	0.8571	0.1844	yes	N/A
P35381	ATPA_DROME	No assigned EC number	0.5925	0.8739	0.1884	yes	N/A
P15999	ATPA_RAT	No assigned EC number	0.5660	0.8571	0.1844	yes	N/A
A5A6H5	ATPA_PANTR	No assigned EC number	0.5660	0.8571	0.1844	yes	N/A
Q03265	ATPA_MOUSE	No assigned EC number	0.5660	0.8571	0.1844	yes	N/A
P19483	ATPA_BOVIN	No assigned EC number	0.5660	0.8571	0.1844	yes	N/A
Q5R546	ATPA_PONAB	No assigned EC number	0.5660	0.8571	0.1844	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	119
PRK09281	502	PRK09281, PRK09281, F0F1 ATP synthase subunit alph	8e-26
COG0056	504	COG0056, AtpA, F0F1-type ATP synthase, alpha subun	6e-19
TIGR00962	501	TIGR00962, atpA, proton translocating ATP synthase	5e-18
CHL00059	485	CHL00059, atpA, ATP synthase CF1 alpha subunit	3e-14
PRK13343	502	PRK13343, PRK13343, F0F1 ATP synthase subunit alph	4e-13
pfam00306	110	pfam00306, ATP-synt_ab_C, ATP synthase alpha/beta	0.001

>gnl|CDD|236448 PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated

 Score = 99.8 bits (250), Expect = 8e-26
 Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 2/89 (2%)

Query: 33  RRLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLE 90
           +RL  LL   QY P+ +EEQV ++Y G  G+LD +   K+  FE E LA+++S+   LLE
Sbjct: 414 QRLVELLKQPQYSPLPVEEQVVILYAGTNGYLDDVPVEKVRRFEAELLAYLRSNHADLLE 473

Query: 91  SIKKEGKITEDTDAKLKTVVTNFLANFTG 119
            I++   ++++ +AKLK  +  F   F  
Sbjct: 474 EIRETKDLSDEIEAKLKAAIEEFKKTFAA 502

Length = 502

>gnl|CDD|223134 COG0056, AtpA, F0F1-type ATP synthase, alpha subunit [Energy production and conversion]

 Score = 80.3 bits (199), Expect = 6e-19
 Identities = 30/78 (38%), Positives = 49/78 (62%)

Query: 41  QYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITE 100
           QY P+++EEQV ++Y G  G+LD +   K+  FEKE LA+++S  + LLE I+   ++ +
Sbjct: 424 QYSPLSVEEQVLILYAGTNGYLDDVPVEKVADFEKELLAYLRSDHKELLEEIRTTKELDD 483

Query: 101 DTDAKLKTVVTNFLANFT 118
           + +AKLK  +  F   F 
Sbjct: 484 EIEAKLKAAIKEFKKTFA 501

Length = 504

>gnl|CDD|233211 TIGR00962, atpA, proton translocating ATP synthase, F1 alpha subunit

 Score = 77.8 bits (192), Expect = 5e-18
 Identities = 30/77 (38%), Positives = 49/77 (63%)

Query: 41  QYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITE 100
           QY P+++EEQV +++ G +G+LD +   KI  FE+  LA++ ++   +LE I    K+TE
Sbjct: 423 QYKPLSVEEQVVILFAGTKGYLDDIPVDKIRKFEQALLAYLDANHPDILEEINTTKKLTE 482

Query: 101 DTDAKLKTVVTNFLANF 117
           + +AKLK  + NF   F
Sbjct: 483 ELEAKLKEALKNFKKTF 499

The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit [Energy metabolism, ATP-proton motive force interconversion]. Length = 501

>gnl|CDD|176999 CHL00059, atpA, ATP synthase CF1 alpha subunit

 Score = 66.9 bits (164), Expect = 3e-14
 Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 2/87 (2%)

Query: 33  RRLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLE 90
           +RL  LL   Q  P+ +EEQVA IY G  G+LD L+  ++  F  E   ++K+++    E
Sbjct: 393 QRLRELLKQSQSAPLTVEEQVATIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQE 452

Query: 91  SIKKEGKITEDTDAKLKTVVTNFLANF 117
            I      TE+ +A LK  +   L  F
Sbjct: 453 IISSTKTFTEEAEALLKEAIQEQLELF 479

Length = 485

>gnl|CDD|183987 PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional

 Score = 63.8 bits (156), Expect = 4e-13
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 2/88 (2%)

Query: 33  RRLPILLGQ--YVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLE 90
           RRL  LL Q  + P+++EEQ+A++Y    G LD +  A I  FE+  L  + +    L  
Sbjct: 414 RRLRELLKQPRFSPLSVEEQIALLYALNEGLLDAVPLANIQAFEERLLEKLDARFAALSL 473

Query: 91  SIKKEGKITEDTDAKLKTVVTNFLANFT 118
           +++   ++ E   A L+ ++      F 
Sbjct: 474 ALESPRELDEAWLAALEEILREAGERFA 501

Length = 502

>gnl|CDD|215848 pfam00306, ATP-synt_ab_C, ATP synthase alpha/beta chain, C terminal domain

 Score = 35.7 bits (83), Expect = 0.001
 Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 13/74 (17%)

Query: 33  RRLPILL--GQYVPM-------AIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKS 83
           RR+   L   QY P         +EE + + Y  +RG  D L    +       LA  K 
Sbjct: 41  RRIEEFLKQNQYSPEPVEKQYVPVEETIDLFYALLRGKFDDLPEDALYRIGTIDLAKYKD 100

Query: 84  SERGLLESIKKEGK 97
               L E  KK  K
Sbjct: 101 ----LEEKFKKLKK 110

Length = 110

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	119
COG0056	504	AtpA F0F1-type ATP synthase, alpha subunit [Energy	99.95
PRK13343	502	F0F1 ATP synthase subunit alpha; Provisional	99.82
CHL00059	485	atpA ATP synthase CF1 alpha subunit	99.8
TIGR00962	501	atpA proton translocating ATP synthase, F1 alpha s	99.79
PRK09281	502	F0F1 ATP synthase subunit alpha; Validated	99.73
TIGR03324	497	alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit a	99.73
PTZ00185	574	ATPase alpha subunit; Provisional	99.6
PRK07165	507	F0F1 ATP synthase subunit alpha; Validated	99.59
KOG1353|consensus	340		99.44
PF00306	113	ATP-synt_ab_C: ATP synthase alpha/beta chain, C te	99.22
PRK04196	460	V-type ATP synthase subunit B; Provisional	96.98
TIGR01041	458	ATP_syn_B_arch ATP synthase archaeal, B subunit. A	96.56
TIGR01043	578	ATP_syn_A_arch ATP synthase archaeal, A subunit. A	91.96
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	87.26
PRK06315	442	type III secretion system ATPase; Provisional	85.24
TIGR03497	413	FliI_clade2 flagellar protein export ATPase FliI.	84.89
PF14615	47	Rsa3: Ribosome-assembly protein 3	82.05
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	81.55
PRK09099	441	type III secretion system ATPase; Provisional	81.11
PRK06936	439	type III secretion system ATPase; Provisional	80.39

>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]

Probab=99.95  E-value=3.7e-28  Score=200.24  Aligned_cols=107  Identities=36%  Similarity=0.604  Sum_probs=104.3

Q ss_pred             hhHHhhhcCCH--HHHHHHhcccchhhhc--CCCCCCCHHHHHHHHHHHhcCcCCCCChhhHHHHHHHHHHHHHhchhHH
Q psy13775         13 GYHYSNFTARI--GLNKSLMLSRRLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGL   88 (119)
Q Consensus        13 ~~~Fs~Fgsdl--~tr~~L~rG~Rl~ElL--~q~~Plsv~eQV~iL~a~~~G~ld~ipv~~I~~fe~~ll~~l~~~~~~~   88 (119)
                      -+.||||||||  +||++|+||+|++|||  |||+|+|+++||++|||+++||||+||+++|.+|+..++.|++.+++++
T Consensus       392 l~afsqf~sdLd~~T~~~l~~G~r~~ellkQ~~~~p~sv~~qv~ilya~~~G~ld~v~v~~v~~fe~~l~~~~~~~~~~~  471 (504)
T COG0056         392 LEAFSQFGSDLDKATRKQLERGKRLTELLKQPQYSPLSVEEQVLILYAGTNGYLDDVPVEKVADFEKELLAYLRSDHKEL  471 (504)
T ss_pred             HHHHHhhcchhCHHHHHHHHccHHHHHHhcCCCCCCccHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHhhHHHH
Confidence            47899999999  9999999999999999  9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHhcCC
Q psy13775         89 LESIKKEGKITEDTDAKLKTVVTNFLANFTG  119 (119)
Q Consensus        89 ~~~I~~~~~l~~~~~~~L~~~i~~~~~~f~~  119 (119)
                      ++.|..++.+++++++.|+.++++|++.|.+
T Consensus       472 ~~~I~~~~~l~~~~e~~l~~~i~~f~~~f~~  502 (504)
T COG0056         472 LEEIRTTKELDDEIEAKLKAAIKEFKKTFAL  502 (504)
T ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999999999998854

>PRK13343 F0F1 ATP synthase subunit alpha; Provisional

Probab=99.82  E-value=7.3e-20  Score=153.83  Aligned_cols=107  Identities=25%  Similarity=0.406  Sum_probs=103.5

Q ss_pred             hhHHhhhcCCH--HHHHHHhcccchhhhc--CCCCCCCHHHHHHHHHHHhcCcCCCCChhhHHHHHHHHHHHHHhchhHH
Q psy13775         13 GYHYSNFTARI--GLNKSLMLSRRLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGL   88 (119)
Q Consensus        13 ~~~Fs~Fgsdl--~tr~~L~rG~Rl~ElL--~q~~Plsv~eQV~iL~a~~~G~ld~ipv~~I~~fe~~ll~~l~~~~~~~   88 (119)
                      -+.|++||+++  .|+++|+||++|+|+|  ++|+|+|.++|++.||++++|++|++|+++|.+|++.+++|++++++++
T Consensus       392 ~e~~~~~G~~ld~~~~~~i~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~  471 (502)
T PRK13343        392 LEAFTRFGGLLDAGTQKQITRGRRLRELLKQPRFSPLSVEEQIALLYALNEGLLDAVPLANIQAFEERLLEKLDARFAAL  471 (502)
T ss_pred             HHHHHHHhhhcCHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHHHhhhHHH
Confidence            36799999999  9999999999999999  9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHhcCC
Q psy13775         89 LESIKKEGKITEDTDAKLKTVVTNFLANFTG  119 (119)
Q Consensus        89 ~~~I~~~~~l~~~~~~~L~~~i~~~~~~f~~  119 (119)
                      ++.|..++.|+++.++.|++++++|.+.|.+
T Consensus       472 ~~~i~~~~~l~~~~~~~l~~~~~~~~~~~~~  502 (502)
T PRK13343        472 SLALESPRELDEAWLAALEEILREAGERFAA  502 (502)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHhhCC
Confidence            9999999999999999999999999998864

>CHL00059 atpA ATP synthase CF1 alpha subunit

Probab=99.80  E-value=2.3e-19  Score=150.22  Aligned_cols=105  Identities=30%  Similarity=0.465  Sum_probs=101.7

Q ss_pred             hhHHhhhcCCH--HHHHHHhcccchhhhc--CCCCCCCHHHHHHHHHHHhcCcCCCCChhhHHHHHHHHHHHHHhchhHH
Q psy13775         13 GYHYSNFTARI--GLNKSLMLSRRLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGL   88 (119)
Q Consensus        13 ~~~Fs~Fgsdl--~tr~~L~rG~Rl~ElL--~q~~Plsv~eQV~iL~a~~~G~ld~ipv~~I~~fe~~ll~~l~~~~~~~   88 (119)
                      -+.|+||++++  .|+.+|+||++|+++|  ++++|++.++|+++||++++|+||++|+++|.+|++.+++|+++++|++
T Consensus       371 ~e~~~~~~~~~d~~~~~~i~~~~~i~~~L~Q~~~~~~~~~e~~~~l~a~~~g~l~~~~~~~v~~~~~~l~~~~~~~~~~~  450 (485)
T CHL00059        371 LEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQVATIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQF  450 (485)
T ss_pred             HHHHHHhhcCCCHHHHHHHHhHHHHHHHhcCCCCCCCCHHHHHHHHHHhccCCcCccCHHHHHHHHHHHHHHHHhhhHHH
Confidence            47899999999  9999999999999999  9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHhc
Q psy13775         89 LESIKKEGKITEDTDAKLKTVVTNFLANF  117 (119)
Q Consensus        89 ~~~I~~~~~l~~~~~~~L~~~i~~~~~~f  117 (119)
                      ++.|..++.++++.++.|++++++|.+.|
T Consensus       451 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~  479 (485)
T CHL00059        451 QEIISSTKTFTEEAEALLKEAIQEQLELF  479 (485)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998876

>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit

Probab=99.79  E-value=6.2e-19  Score=148.35  Aligned_cols=107  Identities=34%  Similarity=0.588  Sum_probs=103.7

Q ss_pred             hhHHhhhcCCH--HHHHHHhcccchhhhc--CCCCCCCHHHHHHHHHHHhcCcCCCCChhhHHHHHHHHHHHHHhchhHH
Q psy13775         13 GYHYSNFTARI--GLNKSLMLSRRLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGL   88 (119)
Q Consensus        13 ~~~Fs~Fgsdl--~tr~~L~rG~Rl~ElL--~q~~Plsv~eQV~iL~a~~~G~ld~ipv~~I~~fe~~ll~~l~~~~~~~   88 (119)
                      -+.|++||+++  .++..|++|++++++|  ++++|++.++|+++||++++||||++|+++|..|+..+++|++++++++
T Consensus       391 ~~~l~~~g~~ld~~~~~~l~~~~~i~~fL~Q~~~~~~~~~~q~~~l~a~~~G~l~~v~~~~i~~~~~~l~~~l~~~~~~~  470 (501)
T TIGR00962       391 LEAFSQFASDLDEATKAQLERGKRLVELLKQPQYKPLPVEEQVVILYAGTKGYLDDIPVDKVRKFEQELLDYLDANHPDI  470 (501)
T ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHhhHHH
Confidence            36899999999  9999999999999999  9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHhcCC
Q psy13775         89 LESIKKEGKITEDTDAKLKTVVTNFLANFTG  119 (119)
Q Consensus        89 ~~~I~~~~~l~~~~~~~L~~~i~~~~~~f~~  119 (119)
                      ++.|..++.++++.++.|++++++|++.|.|
T Consensus       471 ~~~i~~~~~l~~~~~~~L~~~i~~~~~~f~~  501 (501)
T TIGR00962       471 LEEINTKKKLTEELEDKLKEALKNFKKTFAA  501 (501)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999976

The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.

>PRK09281 F0F1 ATP synthase subunit alpha; Validated

Probab=99.73  E-value=2e-17  Score=139.33  Aligned_cols=107  Identities=33%  Similarity=0.582  Sum_probs=102.8

Q ss_pred             hhHHhhhcCCH--HHHHHHhcccchhhhc--CCCCCCCHHHHHHHHHHHhcCcCCCCChhhHHHHHHHHHHHHHhchhHH
Q psy13775         13 GYHYSNFTARI--GLNKSLMLSRRLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGL   88 (119)
Q Consensus        13 ~~~Fs~Fgsdl--~tr~~L~rG~Rl~ElL--~q~~Plsv~eQV~iL~a~~~G~ld~ipv~~I~~fe~~ll~~l~~~~~~~   88 (119)
                      -+.|++||+++  .++..|++|+++.++|  ++|+|++.++|++++|++++|+||++|.+++.+|+..+++|++++++++
T Consensus       392 ~~~l~~~g~~l~~~~~~~l~~~~~i~~fL~Q~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~i~~~~~~~~~~l~~~~~~~  471 (502)
T PRK09281        392 LEAFAQFGSDLDEATRAQLERGQRLVELLKQPQYSPLPVEEQVVILYAGTNGYLDDVPVEKVRRFEAELLAYLRSNHADL  471 (502)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHhhHHH
Confidence            36899999999  9999999999999999  9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHhcCC
Q psy13775         89 LESIKKEGKITEDTDAKLKTVVTNFLANFTG  119 (119)
Q Consensus        89 ~~~I~~~~~l~~~~~~~L~~~i~~~~~~f~~  119 (119)
                      ++.|..++.++++.++.|++++++|.+.|.+
T Consensus       472 ~~~I~~~~~l~~~~~~~L~~~i~~~~~~f~~  502 (502)
T PRK09281        472 LEEIRETKDLSDEIEAKLKAAIEEFKKTFAA  502 (502)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999988753

>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha

Probab=99.73  E-value=1.8e-17  Score=139.25  Aligned_cols=101  Identities=20%  Similarity=0.331  Sum_probs=96.9

Q ss_pred             hhHHhhhcCCH--HHHHHHhcccchhhhc--CCCCCCCHHHHHHHHHHHhcCcCCCCChhhHHHHHHHHHHHHHhchhHH
Q psy13775         13 GYHYSNFTARI--GLNKSLMLSRRLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGL   88 (119)
Q Consensus        13 ~~~Fs~Fgsdl--~tr~~L~rG~Rl~ElL--~q~~Plsv~eQV~iL~a~~~G~ld~ipv~~I~~fe~~ll~~l~~~~~~~   88 (119)
                      -+.|++||+++  .|++.|++|++++++|  ++++|++.++|++.|+++++|++|++|+++|.+|+..+++|++++|+++
T Consensus       392 ~e~~~~~G~~ld~~~~~~i~~~~~i~~fL~Q~~~~~~~~~~~~~~l~~~~~g~~d~~~~~~v~~~~~~~~~~~~~~~~~~  471 (497)
T TIGR03324       392 LETFARFGARLDENTRKTIEHGRRIRACLKQTQSSPLTVPQQIAILLALTNGLFDGVDLDAMPEAESAIRAAVTSLPADL  471 (497)
T ss_pred             HHHHHHhhhhcCHHHHHHHHhHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhhhHHH
Confidence            46799999999  9999999999999999  9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHH
Q psy13775         89 LESIKKEGKITEDTDAKLKTVVTNF  113 (119)
Q Consensus        89 ~~~I~~~~~l~~~~~~~L~~~i~~~  113 (119)
                      ++.|..++.+++++++.|++++++.
T Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~  496 (497)
T TIGR03324       472 RERLQSGKKLSDEDREQILDIARGA  496 (497)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhh
Confidence            9999999999999999999988764

A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.

>PTZ00185 ATPase alpha subunit; Provisional

Probab=99.60  E-value=7.2e-16  Score=130.35  Aligned_cols=65  Identities=15%  Similarity=0.162  Sum_probs=59.1

Q ss_pred             hhHHhhhcCCH-HHHHHHhcccchhhhcCCCCCCCHHHHHHHHHHHhcCcCCCCChhhHHHHHHHHHH
Q psy13775         13 GYHYSNFTARI-GLNKSLMLSRRLPILLGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLA   79 (119)
Q Consensus        13 ~~~Fs~Fgsdl-~tr~~L~rG~Rl~ElL~q~~Plsv~eQV~iL~a~~~G~ld~ipv~~I~~fe~~ll~   79 (119)
                      -++|||||||+ .  ++|+||+|++|+|.|-.|+++++||++|||+++||||++|+++|..+|..+.+
T Consensus       427 l~~fa~fgsdld~--~~l~rG~r~~ellkQ~~p~~~~~qv~~l~a~~~g~ld~~~~~~i~~~~~~~~~  492 (574)
T PTZ00185        427 LAADSVGGSQVQT--VPMIRGARFVALFNQKNPSFFMNALVSLYACLNGYLDDVKVNYAKLYEYLLVN  492 (574)
T ss_pred             HHHHHhhcchhhH--HHHHhhHHHHHHHCCCCCCCHHHHHHHHHHHhcCCcccCcHHHHHHHHHhccC
Confidence            47899999999 6  99999999999993333999999999999999999999999999999987654

>PRK07165 F0F1 ATP synthase subunit alpha; Validated

Probab=99.59  E-value=4.7e-15  Score=124.90  Aligned_cols=101  Identities=8%  Similarity=0.140  Sum_probs=90.1

Q ss_pred             hhHHhhhcCCH--HHHHHHhcccchhhhc--CCCCCCCHHHHHHHHHHHhcCcCCCCCh-hhHHHHHHHHHHHHHhchhH
Q psy13775         13 GYHYSNFTARI--GLNKSLMLSRRLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDP-AKITTFEKEFLAHIKSSERG   87 (119)
Q Consensus        13 ~~~Fs~Fgsdl--~tr~~L~rG~Rl~ElL--~q~~Plsv~eQV~iL~a~~~G~ld~ipv-~~I~~fe~~ll~~l~~~~~~   87 (119)
                      .+.|++||+++  .|++.|++|+++.|+|  ++|+|++..+|+++++++.+|+||++|+ ++|.+|++.+++| +.++++
T Consensus       368 ~e~~~~~~~~ld~~~~~~l~~g~~i~~~L~Q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~  446 (507)
T PRK07165        368 QLKLSMLDYDLNKETSDLLFKGKMIEKMFNQKGFSLYSYRFVLLISKLISWGLLKDVKDEQKALDFIDYLIEN-DPDAKK  446 (507)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhhhhhhCCcHHHHHHHHHHHHHh-hhhhHH
Confidence            46699999999  9999999999999999  9999999999999999999999999999 9999999999999 999999


Q ss_pred             HHHHHHhcCCCCHHHH-HHHHHHHHHHH
Q psy13775         88 LLESIKKEGKITEDTD-AKLKTVVTNFL  114 (119)
Q Consensus        88 ~~~~I~~~~~l~~~~~-~~L~~~i~~~~  114 (119)
                      +++.|..++.+++++. ..+..++.+|.
T Consensus       447 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~  474 (507)
T PRK07165        447 IFNKIKNNEDVDDELMKNYFAFLLNQYS  474 (507)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999998753 23333444443

>KOG1353|consensus

Probab=99.44  E-value=1.5e-14  Score=113.64  Aligned_cols=45  Identities=47%  Similarity=0.693  Sum_probs=43.0

Q ss_pred             hhHHhhhcCCH--HHHHHHhcccchhhhc--CCCCCCCHHHHHHHHHHH
Q psy13775         13 GYHYSNFTARI--GLNKSLMLSRRLPILL--GQYVPMAIEEQVAVIYCG   57 (119)
Q Consensus        13 ~~~Fs~Fgsdl--~tr~~L~rG~Rl~ElL--~q~~Plsv~eQV~iL~a~   57 (119)
                      -++|+||||||  +||+.|+||.|++|+|  +||.||.+++||+++||+
T Consensus       292 vaafaqfgsdlda~tq~~l~rg~rltellkq~qy~p~~~e~qv~~iy~g  340 (340)
T KOG1353|consen  292 VAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYAPLAIEEQVAVIYAG  340 (340)
T ss_pred             HHHHHHhcccccHHHHHHHHhhhHHHHHHhcCCCCCcchhhheeeEecC
Confidence            37899999999  9999999999999999  999999999999999985

>PF00306 ATP-synt_ab_C: ATP synthase alpha/beta chain, C terminal domain; InterPro: IPR000793 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.22  E-value=4.1e-11  Score=82.68  Aligned_cols=68  Identities=18%  Similarity=0.341  Sum_probs=58.7

Q ss_pred             hhHHhh-hcCC-H--HHHHHHhcccchhhhc--CCCCCC-------C-HHHHHHHHHHHhcCcCCCCChhhHHHHHHHHH
Q psy13775         13 GYHYSN-FTAR-I--GLNKSLMLSRRLPILL--GQYVPM-------A-IEEQVAVIYCGVRGHLDKLDPAKITTFEKEFL   78 (119)
Q Consensus        13 ~~~Fs~-Fgsd-l--~tr~~L~rG~Rl~ElL--~q~~Pl-------s-v~eQV~iL~a~~~G~ld~ipv~~I~~fe~~ll   78 (119)
                      -+.|+| ||+| |  .||.+|++|++++|+|  ++|+|+       + ..+++.+++.+.+|+++++|.+.+..+.....
T Consensus        17 L~~~~q~vG~d~L~~~~k~~l~~g~~i~e~LkQ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (113)
T PF00306_consen   17 LEEFVQFVGSDALDDEDKLILERGRRIREFLKQNAFDPVPLEKQYVMILEETIDLFYAILRGKFDDIPEEELEKIETKDI   96 (113)
T ss_dssp             HHHHHHHHTSTCSTHHHHHHHHHHHHHHHHT-BSTTTTTSSHHHHHHHHHHHHHHHHHHHTTTTTTS-GGGHHHHHHHHH
T ss_pred             HHHHHHHhhcccchHHHHHHHHHHHHHHHHcCCCCCCCCcCcchhhhHHHHHHHHHHHHHhCCCccCCHHHHHHHhhHHH
Confidence            367999 7988 6  9999999999999988  999999       5 55555568999999999999999999988888


Q ss_pred             HH
Q psy13775         79 AH   80 (119)
Q Consensus        79 ~~   80 (119)
                      ++
T Consensus        97 ~~   98 (113)
T PF00306_consen   97 EK   98 (113)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the C-terminal domain, which forms a left-handed superhelix composed of 4-5 individual helices. The C-terminal domain can vary between the alpha and beta subunits, and between different ATPases []. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3OAA_U 2F43_B 1MAB_B 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B ....

>PRK04196 V-type ATP synthase subunit B; Provisional

Probab=96.98  E-value=0.0012  Score=55.68  Aligned_cols=64  Identities=14%  Similarity=0.191  Sum_probs=55.3

Q ss_pred             hHHhhh-cCCH---HHHHHHhcccchh-hhc--CCCCCCCHHHHHHHHHHHhcCcCCCCChhhHHHHHHHHHHHH
Q psy13775         14 YHYSNF-TARI---GLNKSLMLSRRLP-ILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHI   81 (119)
Q Consensus        14 ~~Fs~F-gsdl---~tr~~L~rG~Rl~-ElL--~q~~Plsv~eQV~iL~a~~~G~ld~ipv~~I~~fe~~ll~~l   81 (119)
                      ..|.+| |+|.   .++..+.+|+++. +.|  +.+.|.+.++++..++    ++++++|.+++..|+..+++..
T Consensus       382 ~~~~~~~G~~~l~d~~~~~~~~~~~~~~~fL~Q~~~~~~~~~~~~~~l~----~~l~~~~~~~l~~~~~~l~~~~  452 (460)
T PRK04196        382 RELAAIVGEEALSERDRKYLKFADAFEREFVNQGFDENRSIEETLDLGW----ELLSILPESELKRIKDEYIEKY  452 (460)
T ss_pred             HHHHHhcCCCcCCHHHHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHH----HHHhhCCHHHHHHHHHHHHHHh
Confidence            467778 6555   9999999999997 677  8889999999999976    6789999999999999998744

>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit

Probab=96.56  E-value=0.0035  Score=53.00  Aligned_cols=64  Identities=14%  Similarity=0.180  Sum_probs=55.1

Q ss_pred             hHHhhh-cCCH---HHHHHHhcccch-hhhc--CCCCCCCHHHHHHHHHHHhcCcCCCCChhhHHHHHHHHHHHH
Q psy13775         14 YHYSNF-TARI---GLNKSLMLSRRL-PILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHI   81 (119)
Q Consensus        14 ~~Fs~F-gsdl---~tr~~L~rG~Rl-~ElL--~q~~Plsv~eQV~iL~a~~~G~ld~ipv~~I~~fe~~ll~~l   81 (119)
                      ..+.+| |+|.   .++..+.+|+++ .+.|  +.+.|.+.++++..|    .++++.+|.+++..|...+++..
T Consensus       380 ~~i~~~~G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~~~~~l----~~~l~~~~~~~~~~~~~~~~~~~  450 (458)
T TIGR01041       380 RGLVAIVGEEALSERDRKYLKFADLFERRFVRQGRNENRSIEETLDIG----WELLSILPESELKRIDEEYIEKY  450 (458)
T ss_pred             HHHHHhcCCCcCCHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHH----HHHHhhCCHHHHHHHHHHHHHHh
Confidence            456677 8866   999999999995 7888  779999999999999    46788999999999999997744

Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.

>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit

Probab=91.96  E-value=0.78  Score=40.13  Aligned_cols=45  Identities=11%  Similarity=0.154  Sum_probs=38.9

Q ss_pred             hHHhhh-cCC-H--HHHHHHhcccchhhh-c--CCCCCC----CHHHHHHHHHHHh
Q psy13775         14 YHYSNF-TAR-I--GLNKSLMLSRRLPIL-L--GQYVPM----AIEEQVAVIYCGV   58 (119)
Q Consensus        14 ~~Fs~F-gsd-l--~tr~~L~rG~Rl~El-L--~q~~Pl----sv~eQV~iL~a~~   58 (119)
                      +-+.|+ |+| |  ..|..+++|++++|. |  +.|+|+    |.++|+..|.++.
T Consensus       468 ~~iv~lvG~d~L~~~d~~il~~a~~i~e~FLqQ~~~~~~d~~~~~~k~~~~L~~i~  523 (578)
T TIGR01043       468 QEIVQLVGPDALPERQKLILEVARMIREAFLQQNAFDPVDTYCPPQKQYRILRAIM  523 (578)
T ss_pred             HHHHhccCCCCCCHHHHHHHHHhHHHHHhhCCCCCCCCccCCCCHHHHHHHHHHHH
Confidence            457788 999 4  999999999999988 5  889999    9999999887663

Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=87.26  E-value=0.94  Score=37.92  Aligned_cols=46  Identities=9%  Similarity=-0.056  Sum_probs=39.6

Q ss_pred             hhHHhhhc-----CCHHHHHHHhcccchhhhc--CCCCCCCHHHHHHHHHHHh
Q psy13775         13 GYHYSNFT-----ARIGLNKSLMLSRRLPILL--GQYVPMAIEEQVAVIYCGV   58 (119)
Q Consensus        13 ~~~Fs~Fg-----sdl~tr~~L~rG~Rl~ElL--~q~~Plsv~eQV~iL~a~~   58 (119)
                      -+.+.+||     +|..+.+.+.+|.++.+.|  +.+.+.+.++++..|+++-
T Consensus       369 ~~~li~~g~y~~g~d~~~d~~i~~~~~i~~fl~Q~~~~~~~~~~~~~~l~~~~  421 (422)
T TIGR02546       369 VELLIRLGEYQPGSDPETDDAIDKIDAIRAFLRQSTDEYSPYEETLEQLHALV  421 (422)
T ss_pred             HHHHHHhcCCcCCCCHHHHHHHHhHHHHHHHhCCCCCCCCCHHHHHHHHHHHh
Confidence            45678884     4668889999999999999  8899999999999998763

>PRK06315 type III secretion system ATPase; Provisional

Probab=85.24  E-value=1.1  Score=37.96  Aligned_cols=45  Identities=9%  Similarity=-0.052  Sum_probs=39.2

Q ss_pred             hhHHhhhcC-----CHHHHHHHhcccchhhhc--CCCCCCCHHHHHHHHHHH
Q psy13775         13 GYHYSNFTA-----RIGLNKSLMLSRRLPILL--GQYVPMAIEEQVAVIYCG   57 (119)
Q Consensus        13 ~~~Fs~Fgs-----dl~tr~~L~rG~Rl~ElL--~q~~Plsv~eQV~iL~a~   57 (119)
                      .+.|.+||+     |+.+...+++++++.+.|  +.++|.+.++++..|..+
T Consensus       389 ~e~li~~g~y~~g~d~~~d~ai~~~~~i~~fL~Q~~~e~~~~~~~~~~l~~~  440 (442)
T PRK06315        389 NEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEAAQQLRAI  440 (442)
T ss_pred             hHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            467888875     559999999999999999  999999999999887654

>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI

Probab=84.89  E-value=1.1  Score=37.59  Aligned_cols=44  Identities=14%  Similarity=0.181  Sum_probs=38.0

Q ss_pred             hHHhhh-----cCCHHHHHHHhcccchhhhc--CCCCCCCHHHHHHHHHHH
Q psy13775         14 YHYSNF-----TARIGLNKSLMLSRRLPILL--GQYVPMAIEEQVAVIYCG   57 (119)
Q Consensus        14 ~~Fs~F-----gsdl~tr~~L~rG~Rl~ElL--~q~~Plsv~eQV~iL~a~   57 (119)
                      +.+.++     |+|..+.+.+.+|+++.+.|  +.++|.+.++++..|..+
T Consensus       362 ~~li~~g~~~~g~d~~~~~~i~~~~~i~~fl~Q~~~~~~~~~~~~~~l~~~  412 (413)
T TIGR03497       362 EDLINIGAYKRGSNPKIDEAIRYIEKINSFLKQGIDEKFTFEETVQLLKTL  412 (413)
T ss_pred             HHHHHhcCcccCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhh
Confidence            455666     77888999999999999999  999999999999888653

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PF14615 Rsa3: Ribosome-assembly protein 3

Probab=82.05  E-value=4.6  Score=23.87  Aligned_cols=41  Identities=15%  Similarity=0.245  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHhchhHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy13775         72 TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTN  112 (119)
Q Consensus        72 ~fe~~ll~~l~~~~~~~~~~I~~~~~l~~~~~~~L~~~i~~  112 (119)
                      +|.+.+++.+..++.+-+++++....+++.-...|..+++.
T Consensus         1 ~f~~~yl~~~t~efgdDLd~lR~~~dF~~~sl~~Li~aL~~   41 (47)
T PF14615_consen    1 EFRNFYLQRLTDEFGDDLDELRKAPDFTDKSLPLLIDALQQ   41 (47)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHh
Confidence            47888999999999999999999999999888888777765

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=81.55  E-value=2  Score=36.29  Aligned_cols=45  Identities=13%  Similarity=0.180  Sum_probs=36.4

Q ss_pred             hHHhhhcC-----CHHHHHHHhcccchhhhc--CCCCCCCHHHHHHHHHHHh
Q psy13775         14 YHYSNFTA-----RIGLNKSLMLSRRLPILL--GQYVPMAIEEQVAVIYCGV   58 (119)
Q Consensus        14 ~~Fs~Fgs-----dl~tr~~L~rG~Rl~ElL--~q~~Plsv~eQV~iL~a~~   58 (119)
                      +.+.+||+     |+.....+.+++++.+.|  +.++|.+.++++..|+.+.
T Consensus       383 ~~li~~g~y~~g~~~~~d~a~~~~~~~~~fl~Q~~~~~~~~~~~~~~l~~~~  434 (438)
T PRK07721        383 EDLINIGAYKRGSSREIDEAIQFYPQIISFLKQGTDEKATFEESIQALLSLF  434 (438)
T ss_pred             HHHHHhhCCcCCCCHHHHHHHHhHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence            45556665     555566688999999999  9999999999999998764

>PRK09099 type III secretion system ATPase; Provisional

Probab=81.11  E-value=2.2  Score=36.10  Aligned_cols=45  Identities=4%  Similarity=-0.160  Sum_probs=38.8

Q ss_pred             hhHHhhh-----cCCHHHHHHHhcccchhhhc--CCCCCCCHHHHHHHHHHH
Q psy13775         13 GYHYSNF-----TARIGLNKSLMLSRRLPILL--GQYVPMAIEEQVAVIYCG   57 (119)
Q Consensus        13 ~~~Fs~F-----gsdl~tr~~L~rG~Rl~ElL--~q~~Plsv~eQV~iL~a~   57 (119)
                      -+.+.++     |+|..+...+++|+++.+.|  +.++|.|.++++..|..+
T Consensus       387 ~e~li~iG~y~~g~d~~~d~~i~~~~~i~~fL~Q~~~~~~~~~~t~~~l~~~  438 (441)
T PRK09099        387 VETLLQVGEYRAGSDPVADEAIAKIDAIRDFLSQRTDEYSDPDATLAALAEL  438 (441)
T ss_pred             HHHHHHhcCccCCCChhHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            4678888     46778888999999999999  889999999999888655

>PRK06936 type III secretion system ATPase; Provisional

Probab=80.39  E-value=2.7  Score=35.62  Aligned_cols=46  Identities=7%  Similarity=-0.060  Sum_probs=39.5

Q ss_pred             hhhHHhhhc-----CCHHHHHHHhcccchhhhc--CCCCCCCHHHHHHHHHHH
Q psy13775         12 AGYHYSNFT-----ARIGLNKSLMLSRRLPILL--GQYVPMAIEEQVAVIYCG   57 (119)
Q Consensus        12 ~~~~Fs~Fg-----sdl~tr~~L~rG~Rl~ElL--~q~~Plsv~eQV~iL~a~   57 (119)
                      --+.+.+||     +|..+.+.+.++.++.+.|  +.+.|.+.++++..|+.+
T Consensus       385 e~e~li~iG~y~~g~d~~~d~ai~~~~~i~~fL~Q~~~~~~~~~~~~~~l~~~  437 (439)
T PRK06936        385 EVELLLQIGEYQKGQDKEADQAIERIGAIRGFLRQGTHELSHFNETLNLLETL  437 (439)
T ss_pred             HHHHHHHhcCccCCCCHHHHHHHHhHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence            346788895     4778888999999999999  889999999999998865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	119
2w6e_A	553	Low Resolution Structures Of Bovine Mitochondrial F		2e-27
2jiz_A	510	The Structure Of F1-Atpase Inhibited By Resveratrol		2e-27
2f43_A	510	Rat Liver F1-atpase Length = 510		3e-27
1bmf_A	510	Bovine Mitochondrial F1-Atpase Length = 510		3e-27
1cow_A	510	Bovine Mitochondrial F1-Atpase Complexed With Aurov		3e-27
2xnd_A	492	Crystal Structure Of Bovine F1-C8 Sub-Complex Of At		3e-27
1mab_A	510	Rat Liver F1-Atpase Length = 510		4e-27
1ohh_B	487	Bovine Mitochondrial F1-Atpase Complexed With The I		8e-27
2xok_A	545	Refined Structure Of Yeast F1c10 Atpase Complex To		6e-15
4b2q_B	486	Model Of The Yeast F1fo-Atp Synthase Dimer Based On		7e-15
4b2q_A	485	Model Of The Yeast F1fo-Atp Synthase Dimer Based On		7e-15
2hld_A	510	Crystal Structure Of Yeast Mitochondrial F1-Atpase		7e-15
3ofn_A	510	Structure Of Four Mutant Forms Of Yeast F1 Atpase:		7e-15
3oee_A	510	Structure Of Four Mutant Forms Of Yeast F1 Atpase:		8e-15
2r9v_A	515	Crystal Structure Of Atp Synthase Subunit Alpha (Tm		4e-12
3oaa_A	513	Structure Of The E.Coli F1-Atp Synthase Inhibited B		6e-08
1fx0_A	507	Crystal Structure Of The Chloroplast F1-Atpase From		8e-06
2qe7_A	502	Crystal Structure Of The F1-Atpase From The Thermoa		1e-05
1sky_B	502	Crystal Structure Of The Nucleotide Free Alpha3beta		4e-04

>pdb|2W6E|A Chain A, Low Resolution Structures Of Bovine Mitochondrial F1-Atpase During Controlled Dehydration: Hydration State 1. Length = 553

Iteration: 1
 Score =  117 bits (293), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 77/106 (72%), Gaps = 4/106 (3%)
Query: 16  YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
           ++ F + +      +LSR  RL  LL  GQY PMAIEEQVAVIY GVRG+LDKL+P+KIT
Sbjct: 446 FAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKIT 505
Query: 72  TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
            FE  FL+H+ S  + LL  I+ +GKI+E++DAKLK +VTNFLA F
Sbjct: 506 KFENAFLSHVISQHQALLSKIRTDGKISEESDAKLKEIVTNFLAGF 551

>pdb|2JIZ|A Chain A, The Structure Of F1-Atpase Inhibited By Resveratrol. Length = 510

Iteration: 1
 Score =  117 bits (292), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 77/106 (72%), Gaps = 4/106 (3%)
Query: 16  YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
           ++ F + +      +LSR  RL  LL  GQY PMAIEEQVAVIY GVRG+LDKL+P+KIT
Sbjct: 403 FAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKIT 462
Query: 72  TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
            FE  FL+H+ S  + LL  I+ +GKI+E++DAKLK +VTNFLA F
Sbjct: 463 KFENAFLSHVISQHQALLSKIRTDGKISEESDAKLKEIVTNFLAGF 508

>pdb|2F43|A Chain A, Rat Liver F1-atpase Length = 510

Iteration: 1
 Score =  116 bits (291), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 77/106 (72%), Gaps = 4/106 (3%)
Query: 16  YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
           ++ F + +      +LSR  RL  LL  GQY PMAIEEQVAVIY GVRG+LDKL+P+KIT
Sbjct: 403 FAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKIT 462
Query: 72  TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
            FE  FL+H+ S  + LL +I+ +GKI+E +DAKLK +VTNFLA F
Sbjct: 463 KFESAFLSHVVSQHQSLLGNIRSDGKISEQSDAKLKEIVTNFLAGF 508

>pdb|1BMF|A Chain A, Bovine Mitochondrial F1-Atpase Length = 510

Iteration: 1
 Score =  116 bits (291), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 77/106 (72%), Gaps = 4/106 (3%)
Query: 16  YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
           ++ F + +      +LSR  RL  LL  GQY PMAIEEQVAVIY GVRG+LDKL+P+KIT
Sbjct: 403 FAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKIT 462
Query: 72  TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
            FE  FL+H+ S  + LL  I+ +GKI+E++DAKLK +VTNFLA F
Sbjct: 463 KFENAFLSHVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAGF 508

>pdb|1COW|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B Length = 510

Iteration: 1
 Score =  116 bits (291), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 77/106 (72%), Gaps = 4/106 (3%)
Query: 16  YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
           ++ F + +      +LSR  RL  LL  GQY PMAIEEQVAVIY GVRG+LDKL+P+KIT
Sbjct: 403 FAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKIT 462
Query: 72  TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
            FE  FL+H+ S  + LL  I+ +GKI+E++DAKLK +VTNFLA F
Sbjct: 463 KFENAFLSHVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAGF 508

>pdb|2XND|A Chain A, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp Synthase Length = 492

Iteration: 1
 Score =  116 bits (291), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 77/106 (72%), Gaps = 4/106 (3%)
Query: 16  YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
           ++ F + +      +LSR  RL  LL  GQY PMAIEEQVAVIY GVRG+LDKL+P+KIT
Sbjct: 385 FAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKIT 444
Query: 72  TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
            FE  FL+H+ S  + LL  I+ +GKI+E++DAKLK +VTNFLA F
Sbjct: 445 KFENAFLSHVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAGF 490

>pdb|1MAB|A Chain A, Rat Liver F1-Atpase Length = 510

Iteration: 1
 Score =  116 bits (290), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 77/106 (72%), Gaps = 4/106 (3%)
Query: 16  YSNFTARIGLNKSLMLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKIT 71
           ++ F + +      +LSR  RL  LL  GQY PMAIEEQVAVIY GVRG+LDKL+P+KIT
Sbjct: 403 FAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKIT 462
Query: 72  TFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
            FE  FL+H+ S  + LL +I+ +GKI+E +DAKLK +VTNFLA F
Sbjct: 463 KFESAFLSHVVSQHQSLLGNIRTDGKISEQSDAKLKEIVTNFLAGF 508

>pdb|1OHH|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The Inhibitor Protein If1 Length = 487

Iteration: 1
 Score =  115 bits (287), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 72/92 (78%), Gaps = 4/92 (4%)
Query: 30  MLSR--RLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSE 85
           +LSR  RL  LL  GQY PMAIEEQVAVIY GVRG+LDKL+P+KIT FE  FL+H+ S  
Sbjct: 386 LLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQH 445
Query: 86  RGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
           + LL  I+ +GKI+E++DAKLK +VTNFLA F
Sbjct: 446 QALLGKIRTDGKISEESDAKLKEIVTNFLAGF 477

>pdb|2XOK|A Chain A, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A Resolution Length = 545

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 62/93 (66%), Gaps = 2/93 (2%)
Query: 27  KSLMLSRRLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSS 84
           ++L+   RL  LL   QY P+A EEQV +IY GV GHLD ++ ++I  FE  FL+++KS+
Sbjct: 453 QTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSN 512
Query: 85  ERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
              LL  I+++G+++++  A LK+   +F+A F
Sbjct: 513 HNELLTEIREKGELSKELLASLKSATESFVATF 545

>pdb|4B2Q|B Chain B, Model Of The Yeast F1fo-Atp Synthase Dimer Based On Subtomogram Average Length = 486

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 62/93 (66%), Gaps = 2/93 (2%)
Query: 27  KSLMLSRRLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSS 84
           ++L+   RL  LL   QY P+A EEQV +IY GV GHLD ++ ++I  FE  FL+++KS+
Sbjct: 394 QTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSN 453
Query: 85  ERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
              LL  I+++G+++++  A LK+   +F+A F
Sbjct: 454 HNELLTEIREKGELSKELLASLKSATESFVATF 486

>pdb|4B2Q|A Chain A, Model Of The Yeast F1fo-Atp Synthase Dimer Based On Subtomogram Average Length = 485

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 62/93 (66%), Gaps = 2/93 (2%)
Query: 27  KSLMLSRRLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSS 84
           ++L+   RL  LL   QY P+A EEQV +IY GV GHLD ++ ++I  FE  FL+++KS+
Sbjct: 393 QTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSN 452
Query: 85  ERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
              LL  I+++G+++++  A LK+   +F+A F
Sbjct: 453 HNELLTEIREKGELSKELLASLKSATESFVATF 485

>pdb|2HLD|A Chain A, Crystal Structure Of Yeast Mitochondrial F1-Atpase Length = 510

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 62/93 (66%), Gaps = 2/93 (2%)
Query: 27  KSLMLSRRLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSS 84
           ++L+   RL  LL   QY P+A EEQV +IY GV GHLD ++ ++I  FE  FL+++KS+
Sbjct: 418 QTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSN 477
Query: 85  ERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
              LL  I+++G+++++  A LK+   +F+A F
Sbjct: 478 HNELLTEIREKGELSKELLASLKSATESFVATF 510

>pdb|3OFN|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase: Alpha-N67i Length = 510

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 62/93 (66%), Gaps = 2/93 (2%)
Query: 27  KSLMLSRRLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSS 84
           ++L+   RL  LL   QY P+A EEQV +IY GV GHLD ++ ++I  FE  FL+++KS+
Sbjct: 418 QTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSN 477
Query: 85  ERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
              LL  I+++G+++++  A LK+   +F+A F
Sbjct: 478 HNELLTEIREKGELSKELLASLKSATESFVATF 510

>pdb|3OEE|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase: Alpha-F405s Length = 510

Iteration: 1
 Score = 75.5 bits (184), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 62/93 (66%), Gaps = 2/93 (2%)
Query: 27  KSLMLSRRLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSS 84
           ++L+   RL  LL   QY P+A EEQV +IY GV GHLD ++ ++I  FE  FL+++KS+
Sbjct: 418 QTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSN 477
Query: 85  ERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 117
              LL  I+++G+++++  A LK+   +F+A F
Sbjct: 478 HNELLTEIREKGELSKELLASLKSATESFVATF 510

>pdb|2R9V|A Chain A, Crystal Structure Of Atp Synthase Subunit Alpha (Tm1612) From Thermotoga Maritima At 2.10 A Resolution Length = 515

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 41  QYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITE 100
           QY P  +EEQV V++ GVRG+LD L   ++  FEKEFL       + +L+ IK + ++T 
Sbjct: 437 QYSPXPVEEQVVVLFAGVRGYLDDLPVEEVRRFEKEFLRFXHEKHQDILDDIKTKKELTS 496
Query: 101 DTDAKLKTVVTNFLANF 117
           +T+ KLK  +  F   F
Sbjct: 497 ETEEKLKKAIEEFKTTF 513

>pdb|3OAA|A Chain A, Structure Of The E.Coli F1-Atp Synthase Inhibited By Subunit Epsilon Length = 513

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 44/75 (58%)
Query: 41  QYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITE 100
           QY PM++ +Q  V++   RG+L  ++ +KI +FE   LA++      L++ I + G   +
Sbjct: 435 QYAPMSVAQQSLVLFAAERGYLADVELSKIGSFEAALLAYVDRDHAPLMQEINQTGGYND 494
Query: 101 DTDAKLKTVVTNFLA 115
           + + KLK ++ +F A
Sbjct: 495 EIEGKLKGILDSFKA 509

>pdb|1FX0|A Chain A, Crystal Structure Of The Chloroplast F1-Atpase From Spinach Length = 507

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%)
Query: 41  QYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITE 100
           Q  P+ +EEQV  IY G  G+LD L+  ++  +  E   ++K+++    E I      TE
Sbjct: 425 QSAPLTVEEQVMTIYTGTNGYLDSLELDQVRKYLVELRTYVKTNKPEFQEIISSTKTFTE 484
Query: 101 DTDAKLKTVVTNFLANF 117
           + +A LK  +   +  F
Sbjct: 485 EAEALLKEAIQEQMERF 501

>pdb|2QE7|A Chain A, Crystal Structure Of The F1-Atpase From The Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1 Length = 502

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 41  QYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITE 100
           ++ PM +EEQV  IY    G +D +    +  FE+E L+ +++++  LL+ I++ G++ +
Sbjct: 424 EHKPMPVEEQVISIYAVTNGFMDDIPVEDVRRFEEELLSFMRANKDSLLDHIRQTGELPD 483
Query: 101 DTDAKLKTVVTNFLANFT 118
             +  L   +  F   FT
Sbjct: 484 TKE--LDAAIEEFKKGFT 499

>pdb|1SKY|B Chain B, Crystal Structure Of The Nucleotide Free Alpha3beta3 Sub-Complex Of F1-Atpase From The Thermophilic Bacillus Ps3 Length = 502

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 44  PMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTD 103
           P+ +E+QV +IY   RG LD +    +  FEKEF   +  + + LLE I+    +  + D
Sbjct: 427 PIPVEKQVLIIYALTRGFLDDIPVEDVRRFEKEFYLWLDQNGQHLLEHIRTTKDLPNEDD 486

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	119
3oaa_A	513	ATP synthase subunit alpha; rossmann fold, hydrola	7e-30
2ck3_A	510	ATP synthase subunit alpha\, mitochondrial; hydrol	1e-29
2r9v_A	515	ATP synthase subunit alpha; TM1612, structural gen	4e-29
1fx0_A	507	ATP synthase alpha chain; latent ATPase, thermal s	6e-29
2qe7_A	502	ATP synthase subunit alpha; blockage of ATP hydrol	2e-26

>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A Length = 513

 Score =  110 bits (277), Expect = 7e-30
 Identities = 25/88 (28%), Positives = 50/88 (56%), Gaps = 2/88 (2%)

Query: 33  RRLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLE 90
           +++  LL   QY PM++ +Q  V++   RG+L  ++ +KI +FE   LA++      L++
Sbjct: 425 QKVTELLKQKQYAPMSVAQQSLVLFAAERGYLADVELSKIGSFEAALLAYVDRDHAPLMQ 484

Query: 91  SIKKEGKITEDTDAKLKTVVTNFLANFT 118
            I + G   ++ + KLK ++ +F A  +
Sbjct: 485 EINQTGGYNDEIEGKLKGILDSFKATQS 512

>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ... Length = 510

 Score =  110 bits (276), Expect = 1e-29
 Identities = 56/88 (63%), Positives = 68/88 (77%), Gaps = 2/88 (2%)

Query: 33  RRLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLE 90
            RL  LL  GQY PMAIEEQVAVIY GVRG+LDKL+P+KIT FE  FL+H+ S  + LL 
Sbjct: 422 VRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLG 481

Query: 91  SIKKEGKITEDTDAKLKTVVTNFLANFT 118
            I+ +GKI+E++DAKLK +VTNFLA F 
Sbjct: 482 KIRTDGKISEESDAKLKEIVTNFLAGFE 509

>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8} Length = 515

 Score =  108 bits (272), Expect = 4e-29
 Identities = 36/87 (41%), Positives = 53/87 (60%), Gaps = 2/87 (2%)

Query: 33  RRLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLE 90
           +RL  LL   QY PM +EEQV V++ GVRG+LD L   ++  FEKEFL  +    + +L+
Sbjct: 427 QRLMELLKQEQYSPMPVEEQVVVLFAGVRGYLDDLPVEEVRRFEKEFLRFMHEKHQDILD 486

Query: 91  SIKKEGKITEDTDAKLKTVVTNFLANF 117
            IK + ++T +T+ KLK  +  F   F
Sbjct: 487 DIKTKKELTSETEEKLKKAIEEFKTTF 513

>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A* Length = 507

 Score =  107 bits (270), Expect = 6e-29
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 2/88 (2%)

Query: 33  RRLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLE 90
           +RL  LL   Q  P+ +EEQV  IY G  G+LD L+  ++  +  E   ++K+++    E
Sbjct: 415 QRLRELLKQPQSAPLTVEEQVMTIYTGTNGYLDSLELDQVRKYLVELRTYVKTNKPEFQE 474

Query: 91  SIKKEGKITEDTDAKLKTVVTNFLANFT 118
            I      TE+ +A LK  +   +  F 
Sbjct: 475 IISSTKTFTEEAEALLKEAIQEQMERFL 502

>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B Length = 502

 Score =  100 bits (252), Expect = 2e-26
 Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 4/88 (4%)

Query: 33  RRLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLE 90
            R   +L   ++ PM +EEQV  IY    G +D +    +  FE+E L+ +++++  LL+
Sbjct: 414 ERTVEILKQDEHKPMPVEEQVISIYAVTNGFMDDIPVEDVRRFEEELLSFMRANKDSLLD 473

Query: 91  SIKKEGKITEDTDAKLKTVVTNFLANFT 118
            I++ G++ +    +L   +  F   FT
Sbjct: 474 HIRQTGELPD--TKELDAAIEEFKKGFT 499

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	119
3oaa_A	513	ATP synthase subunit alpha; rossmann fold, hydrola	99.86
2ck3_A	510	ATP synthase subunit alpha\, mitochondrial; hydrol	99.8
2r9v_A	515	ATP synthase subunit alpha; TM1612, structural gen	99.8
1fx0_A	507	ATP synthase alpha chain; latent ATPase, thermal s	99.79
2qe7_A	502	ATP synthase subunit alpha; blockage of ATP hydrol	99.72
2c61_A	469	A-type ATP synthase non-catalytic subunit B; hydro	97.27
3vr4_D	465	V-type sodium ATPase subunit D; V-ATPase, rotary m	96.45
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	94.12
3gqb_B	464	V-type ATP synthase beta chain; A3B3, V-ATPase, AT	92.75
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	90.76
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	90.26
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	89.78
1fx0_B	498	ATP synthase beta chain; latent ATPase, thermal st	86.45
3vr4_A	600	V-type sodium ATPase catalytic subunit A; V-ATPase	84.8
3mfy_A	588	V-type ATP synthase alpha chain; A-type ATP syntha	83.83

>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A

Probab=99.86  E-value=9.5e-22  Score=164.20  Aligned_cols=107  Identities=27%  Similarity=0.476  Sum_probs=101.7

Q ss_pred             hhHHhhhcCCH--HHHHHHhcccchhhhc--CCCCCCCHHHHHHHHHHHhcCcCCCCChhhHHHHHHHHHHHHHhchhHH
Q psy13775         13 GYHYSNFTARI--GLNKSLMLSRRLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGL   88 (119)
Q Consensus        13 ~~~Fs~Fgsdl--~tr~~L~rG~Rl~ElL--~q~~Plsv~eQV~iL~a~~~G~ld~ipv~~I~~fe~~ll~~l~~~~~~~   88 (119)
                      -+.|++||+++  .++.+|+||+|++++|  ++|+|+++++|+++||++++||||+||+++|.+|++++++|++++++++
T Consensus       403 l~~~~~~g~~ld~~~~~~l~~~~~i~~fL~Q~~~~~~~~~e~~~~l~a~~~g~ld~~~~~~~~~~~~~~~~~~~~~~~~~  482 (513)
T 3oaa_A          403 LAAFSQFASDLDDATRKQLDHGQKVTELLKQKQYAPMSVAQQSLVLFAAERGYLADVELSKIGSFEAALLAYVDRDHAPL  482 (513)
T ss_dssp             HHHHHTTCCSCCHHHHHHHHHHHHHHHHTCCCSSCCCCTTHHHHHHHHHHSCTTTTTCCHHHHHHHHHHHHHHTGGGCHH
T ss_pred             HHHHHHhhccCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCCCccCCHHHHHHHHHHHHHHHHhhhHHH
Confidence            46899999999  9999999999999999  9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHhcCC
Q psy13775         89 LESIKKEGKITEDTDAKLKTVVTNFLANFTG  119 (119)
Q Consensus        89 ~~~I~~~~~l~~~~~~~L~~~i~~~~~~f~~  119 (119)
                      ++.|..++++++++++.|++++++|++...|
T Consensus       483 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~  513 (513)
T 3oaa_A          483 MQEINQTGGYNDEIEGKLKGILDSFKATQSW  513 (513)
T ss_dssp             HHHHHHHCCCCHHHHHHHHHHHHHHTTCC--
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHhhcCC
Confidence            9999999999999999999999999876543

>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...

Probab=99.80  E-value=2.2e-19  Score=150.08  Aligned_cols=106  Identities=55%  Similarity=0.850  Sum_probs=102.5

Q ss_pred             hhHHhhhcCCH--HHHHHHhcccchhhhc--CCCCCCCHHHHHHHHHHHhcCcCCCCChhhHHHHHHHHHHHHHhchhHH
Q psy13775         13 GYHYSNFTARI--GLNKSLMLSRRLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGL   88 (119)
Q Consensus        13 ~~~Fs~Fgsdl--~tr~~L~rG~Rl~ElL--~q~~Plsv~eQV~iL~a~~~G~ld~ipv~~I~~fe~~ll~~l~~~~~~~   88 (119)
                      -+.|++||+||  .++.+|+||+|++++|  ++|+|+|+++|+..||++.+|++|++|+++|.+|+..+++|++++++++
T Consensus       400 l~~~~~~G~~l~~~~~~~l~~~~~i~~fL~Q~~~~~~~~~~~~~~l~~~~~g~l~~i~~~~i~~~~~~~~~~~~~~~~~~  479 (510)
T 2ck3_A          400 VAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQAL  479 (510)
T ss_dssp             HGGGSSSCSSSCHHHHHHHHHHHHHHHTTCCCSSCCCCHHHHHHHHHHHHTTSSTTSCGGGHHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHhHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHhhhHHH
Confidence            35789999999  8999999999999999  9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHhcC
Q psy13775         89 LESIKKEGKITEDTDAKLKTVVTNFLANFT  118 (119)
Q Consensus        89 ~~~I~~~~~l~~~~~~~L~~~i~~~~~~f~  118 (119)
                      ++.|..++.+++++++.|++++++|++.|.
T Consensus       480 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~  509 (510)
T 2ck3_A          480 LGKIRTDGKISEESDAKLKEIVTNFLAGFE  509 (510)
T ss_dssp             HHHHHHSSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999998875

>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}

Probab=99.80  E-value=3e-19  Score=149.35  Aligned_cols=105  Identities=35%  Similarity=0.656  Sum_probs=101.9

Q ss_pred             hHHhhhcCCH--HHHHHHhcccchhhhc--CCCCCCCHHHHHHHHHHHhcCcCCCCChhhHHHHHHHHHHHHHhchhHHH
Q psy13775         14 YHYSNFTARI--GLNKSLMLSRRLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLL   89 (119)
Q Consensus        14 ~~Fs~Fgsdl--~tr~~L~rG~Rl~ElL--~q~~Plsv~eQV~iL~a~~~G~ld~ipv~~I~~fe~~ll~~l~~~~~~~~   89 (119)
                      +.|++||+|+  .++.+|++|+|++++|  ++|+|+|+++|+..||++.+|++|++|+++|.+|+..+++|+++++++++
T Consensus       406 ~~~~~~G~~l~~~~~~~l~~~~~i~~fL~Q~~~~~~~~~e~~~~l~~~~~g~ld~i~~~~i~~~~~~~~~~~~~~~~~~~  485 (515)
T 2r9v_A          406 ETFAQFATELDPATRAQIIRGQRLMELLKQEQYSPMPVEEQVVVLFAGVRGYLDDLPVEEVRRFEKEFLRFMHEKHQDIL  485 (515)
T ss_dssp             HTTGGGCSCCCHHHHHHHHHHHHHHHHTCCCTTCCCCHHHHHHHHHHHHTTTTTTSCGGGHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHhccCCCHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHhhhHHHH
Confidence            5689999999  8999999999999999  99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHhcC
Q psy13775         90 ESIKKEGKITEDTDAKLKTVVTNFLANFT  118 (119)
Q Consensus        90 ~~I~~~~~l~~~~~~~L~~~i~~~~~~f~  118 (119)
                      +.|..++.+++++++.|++++++|++.|.
T Consensus       486 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~  514 (515)
T 2r9v_A          486 DDIKTKKELTSETEEKLKKAIEEFKTTFR  514 (515)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999998874

>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*

Probab=99.79  E-value=3.4e-19  Score=148.88  Aligned_cols=106  Identities=27%  Similarity=0.441  Sum_probs=101.7

Q ss_pred             hhHHhhhcCCH--HHHHHHhcccchhhhc--CCCCCCCHHHHHHHHHHHhcCcCCCCChhhHHHHHHHHHHHHHhchhHH
Q psy13775         13 GYHYSNFTARI--GLNKSLMLSRRLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGL   88 (119)
Q Consensus        13 ~~~Fs~Fgsdl--~tr~~L~rG~Rl~ElL--~q~~Plsv~eQV~iL~a~~~G~ld~ipv~~I~~fe~~ll~~l~~~~~~~   88 (119)
                      -+.|++||+|+  .++.+|+||+|+++.|  ++|+|+|+++|+..||++.+|++|++|+++|.+|++.+++|++.+++++
T Consensus       393 l~~~~~~G~~l~~~~~~~l~~~~~i~~fL~Q~~~~~~~~~e~~~~l~~~~~g~l~~i~~~~i~~~~~~~~~~~~~~~~~~  472 (507)
T 1fx0_A          393 LEAFAQFASDLDKATQNQLARGQRLRELLKQPQSAPLTVEEQVMTIYTGTNGYLDSLELDQVRKYLVELRTYVKTNKPEF  472 (507)
T ss_dssp             HTTTGGGCSSCCHHHHHHHHHHHHHHHHHCCCTTCCCCHHHHHHHHHHHHTTSSSSSCHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhhchhcCCCHHHHHHHHHHHHHHHHhhhHHH
Confidence            35689999999  8999999999999999  9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHhcC
Q psy13775         89 LESIKKEGKITEDTDAKLKTVVTNFLANFT  118 (119)
Q Consensus        89 ~~~I~~~~~l~~~~~~~L~~~i~~~~~~f~  118 (119)
                      ++.|..++.+++++++.|++++++|++.|.
T Consensus       473 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~  502 (507)
T 1fx0_A          473 QEIISSTKTFTEEAEALLKEAIQEQMERFL  502 (507)
T ss_dssp             HHHHHHHTSCCHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999998873

>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B

Probab=99.72  E-value=1.8e-18  Score=144.36  Aligned_cols=104  Identities=25%  Similarity=0.496  Sum_probs=99.0

Q ss_pred             hhHHhhhcCCH--HHHHHHhcccchhhhc--CCCCCCCHHHHHHHHHHHhcCcCCCCChhhHHHHHHHHHHHHHhchhHH
Q psy13775         13 GYHYSNFTARI--GLNKSLMLSRRLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGL   88 (119)
Q Consensus        13 ~~~Fs~Fgsdl--~tr~~L~rG~Rl~ElL--~q~~Plsv~eQV~iL~a~~~G~ld~ipv~~I~~fe~~ll~~l~~~~~~~   88 (119)
                      -+.|++||+||  .++.+|+||+|+++.|  ++|+|+|+++|+..||++.+|++|++|+++|.+|++.+++|++++++++
T Consensus       392 l~~~~~~G~~l~~~~~~~l~~~~~i~~fL~Q~~~~~~~~~~~~~~l~~~~~g~l~~i~~~~i~~~~~~~~~~~~~~~~~~  471 (502)
T 2qe7_A          392 LQAFAQFGSDLDKATQAKLNRGERTVEILKQDEHKPMPVEEQVISIYAVTNGFMDDIPVEDVRRFEEELLSFMRANKDSL  471 (502)
T ss_dssp             GGGSTTCCCCTTTTTTTTHHHHHHHHHHHCCCTTCCCCHHHHHHHHHHHHTTTTTSSCSTTHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHhhhHHH
Confidence            35689999999  8999999999999999  9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHhcC
Q psy13775         89 LESIKKEGKITEDTDAKLKTVVTNFLANFT  118 (119)
Q Consensus        89 ~~~I~~~~~l~~~~~~~L~~~i~~~~~~f~  118 (119)
                      ++.|..++.++++  +.|++++++|++.|.
T Consensus       472 ~~~i~~~~~~~~~--~~~~~~~~~~~~~~~  499 (502)
T 2qe7_A          472 LDHIRQTGELPDT--KELDAAIEEFKKGFT  499 (502)
T ss_dssp             HHHHHSSCCCCCT--THHHHHHHTTCSCSC
T ss_pred             HHHHHhcCCCCHH--HHHHHHHHHHHHhhc
Confidence            9999999999999  999999999987663

>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*

Probab=97.27  E-value=8.9e-05  Score=61.45  Aligned_cols=65  Identities=11%  Similarity=0.185  Sum_probs=56.8

Q ss_pred             hHHhhhc--CCH--HHHHHHhcccchhh-hc--CCCCCCCHHHHHHHHHHHhcCcCCCCChhhHHHHHHHHHHHHH
Q psy13775         14 YHYSNFT--ARI--GLNKSLMLSRRLPI-LL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIK   82 (119)
Q Consensus        14 ~~Fs~Fg--sdl--~tr~~L~rG~Rl~E-lL--~q~~Plsv~eQV~iL~a~~~G~ld~ipv~~I~~fe~~ll~~l~   82 (119)
                      +.|.+|+  +++  .++..+++|+++.+ .|  +.|.|.++++++..|++    +|+.+|.+.+..++.++++++.
T Consensus       391 ~~i~~~~G~~~l~d~~~~~l~~~~~i~~~fL~Q~~~~~~~~~et~~~l~~----~l~~~~~~~~~~~~~~~~~~~~  462 (469)
T 2c61_A          391 RGLVAIVGKEALSERDTKFLEFADLFEDKFVRQGRNENRTIEDTLEIGWQ----ILTHLPENQLGRIDNKYIQKYH  462 (469)
T ss_dssp             HHHHHHHCGGGSCHHHHHHHHHHHHHHHHTTCCCTTCCCCHHHHHHHHHH----HHTTSCGGGCTTSCHHHHHHHS
T ss_pred             HHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH----HHHhCCHHHHHHHHHHHHHHHh
Confidence            3456665  344  88999999999998 99  88999999999999999    5799999999999999999885

>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*

Probab=96.45  E-value=0.001  Score=55.05  Aligned_cols=63  Identities=13%  Similarity=0.143  Sum_probs=53.5

Q ss_pred             HHhhhc-CCH---HHHHHHhcccch-hhhc--CCCCCCCHHHHHHHHHHHhcCcCCCCChhhHHHHHHHHHHHH
Q psy13775         15 HYSNFT-ARI---GLNKSLMLSRRL-PILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHI   81 (119)
Q Consensus        15 ~Fs~Fg-sdl---~tr~~L~rG~Rl-~ElL--~q~~Plsv~eQV~iL~a~~~G~ld~ipv~~I~~fe~~ll~~l   81 (119)
                      .+.+|+ +|.   .++..+.+|+++ .+.|  +.+.|.+.++++.+|+.    +++.+|.+++.+|+.++++..
T Consensus       391 ~i~~~~G~d~L~~~d~~~~~~~~~~~~~fL~Q~~~e~~~~~~~~~~l~~----~l~~~p~~~~~~~~~~~~~~~  460 (465)
T 3vr4_D          391 ELAVVLGESALSDIDKIYAKFAERFENEYVNQGFYTNRTITETLDLGWE----LLAMLPRTELKRIKDDLLDKY  460 (465)
T ss_dssp             HHHHHHCTTSCCHHHHHHHHHHHHHHHHTTCCCTTCCCCHHHHHHHHHH----HHTTSCTTTCTTSCHHHHHHH
T ss_pred             HHHhhcCCCCCCHHHHHHHHhhHHHHHHHhCCCCCCCCCHHHHHHHHHH----HHhhCCHHHHHHHHHHHHHHh
Confidence            455564 343   789999999998 6888  88999999999999988    788999999999999998754

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=94.12  E-value=0.049  Score=42.89  Aligned_cols=45  Identities=4%  Similarity=-0.015  Sum_probs=39.5

Q ss_pred             hhHHhhhcC-----CHHHHHHHhcccchhhhc--CCCCCCCHHHHHHHHHHH
Q psy13775         13 GYHYSNFTA-----RIGLNKSLMLSRRLPILL--GQYVPMAIEEQVAVIYCG   57 (119)
Q Consensus        13 ~~~Fs~Fgs-----dl~tr~~L~rG~Rl~ElL--~q~~Plsv~eQV~iL~a~   57 (119)
                      .+.+.+||+     |..|+..+++|+++.+.|  +.++|.|.++|+..|..+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~Q~~~~~~~~~~~~~~~~~~  345 (347)
T 2obl_A          294 PELLIRIGEYTMGQDPEADKAIKNRKLIQNFIQQSTKDISSYEKTIESLFKV  345 (347)
T ss_dssp             THHHHTTTCCCCCSCHHHHHHHHTHHHHHHHHCCCTTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            567888877     448899999999999999  999999999999988765

>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*

Probab=92.75  E-value=0.035  Score=45.93  Aligned_cols=60  Identities=13%  Similarity=0.282  Sum_probs=48.0

Q ss_pred             HHhhhc-CC-H--HHHHHHhcccchh-hhc--CCCCCCCHHHHHHHHHHHhcCcCCCCChhhHHHHHHHHHH
Q psy13775         15 HYSNFT-AR-I--GLNKSLMLSRRLP-ILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLA   79 (119)
Q Consensus        15 ~Fs~Fg-sd-l--~tr~~L~rG~Rl~-ElL--~q~~Plsv~eQV~iL~a~~~G~ld~ipv~~I~~fe~~ll~   79 (119)
                      .+.+|+ +| +  .++..+.+|+++. +.|  + ++|.+.++++.+++..    +..+|.+++.++..++++
T Consensus       394 ~i~~~~G~d~L~~~d~~~~~~~~~~~~~fL~Q~-~e~~~~~~s~~~l~~l----l~~~p~~~~~~~~~~~~~  460 (464)
T 3gqb_B          394 KLVAIIGEDALTENDRRYLQFADAFERFFINQG-QQNRSIEESLQIAWAL----LSMLPQGELKRISKDHIG  460 (464)
T ss_dssp             HHTSSSCSCCCCSHHHHTTHHHHHHHHTTTCCT-TCCCCHHHHHHHHHHH----HTTSCGGGCTTSCHHHHH
T ss_pred             HHHHhcCCCCCCHHHHHHHHhhHHHHHHhcCCC-CCCCCHHHHHHHHHHH----HHhCCHHHHhcCCHHHHH
Confidence            345564 34 3  8999999999985 788  6 9999999999999984    567788888888777765

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=90.76  E-value=0.19  Score=40.77  Aligned_cols=46  Identities=17%  Similarity=0.169  Sum_probs=39.7

Q ss_pred             hhHHhhhcC-----CHHHHHHHhcccchhhhc--CCCCCCCHHHHHHHHHHHh
Q psy13775         13 GYHYSNFTA-----RIGLNKSLMLSRRLPILL--GQYVPMAIEEQVAVIYCGV   58 (119)
Q Consensus        13 ~~~Fs~Fgs-----dl~tr~~L~rG~Rl~ElL--~q~~Plsv~eQV~iL~a~~   58 (119)
                      .+.+.+||+     |..|+..+.+|+++.+.|  +.++|.|.++|+..|+.+-
T Consensus       383 ~~~~~~~~~~~~~~d~~~~~~i~~~~~~~~fl~Q~~~~~~~~~~~~~~~~~~~  435 (438)
T 2dpy_A          383 NRDLVSVGAYAKGSDPMLDKAITLWPQLEAFLQQGIFERADWEDSLQALDLIF  435 (438)
T ss_dssp             GGGTSSSSCCCTTSCHHHHHHHTTHHHHHHHHCCCTTCCCCHHHHHHHHHHHS
T ss_pred             HHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence            566778866     448899999999999999  9999999999999998763

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=90.26  E-value=0.32  Score=40.38  Aligned_cols=56  Identities=11%  Similarity=0.030  Sum_probs=43.4

Q ss_pred             hhHHhhhcCCH---HHHHHHhcccchhhhc--CCC----------CCCCHHHHHHHHHHHhcCcCCCCChh
Q psy13775         13 GYHYSNFTARI---GLNKSLMLSRRLPILL--GQY----------VPMAIEEQVAVIYCGVRGHLDKLDPA   68 (119)
Q Consensus        13 ~~~Fs~Fgsdl---~tr~~L~rG~Rl~ElL--~q~----------~Plsv~eQV~iL~a~~~G~ld~ipv~   68 (119)
                      ..+++.+|.|.   .++..|++|+++.+.|  +.|          ...+.++-+.-|..+-+|-+|++|.+
T Consensus       389 ~~li~i~G~~~l~~~d~~~l~~~~~i~~fL~Q~~~v~~~f~~~~g~~~~~~~t~~~l~~il~g~~d~~pe~  459 (482)
T 2ck3_D          389 QDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQ  459 (482)
T ss_dssp             HHHHHHHCGGGSCHHHHHHHHHHHHHHHHTCCCCGGGHHHHSSCCCCCCHHHHHHHHHHHHTTTTTTSCGG
T ss_pred             HHHHHHhCCCcCCHHHHHHHHHHHHHHHHHcCCchHHHHhhcCccccCCHHHHHHHHHHHhcccccCCCHH
Confidence            34568899874   8899999999999999  533          66777777777777777777777765

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=89.78  E-value=0.42  Score=39.52  Aligned_cols=58  Identities=14%  Similarity=0.101  Sum_probs=46.6

Q ss_pred             hhhHHhhhcC-CH--HHHHHHhcccchhhhc--CCC----------CCCCHHHHHHHHHHHhcCcCCCCChhh
Q psy13775         12 AGYHYSNFTA-RI--GLNKSLMLSRRLPILL--GQY----------VPMAIEEQVAVIYCGVRGHLDKLDPAK   69 (119)
Q Consensus        12 ~~~~Fs~Fgs-dl--~tr~~L~rG~Rl~ElL--~q~----------~Plsv~eQV~iL~a~~~G~ld~ipv~~   69 (119)
                      ...+++.||. ++  .++..+++|+++.+.|  +.|          ...|.++.+-.|..+-+|-+|.+|.+.
T Consensus       380 ~~~li~i~g~~~ls~~d~~~l~~~~~i~~fL~Q~~~~~~~~~~~~~~~~~~~~t~~~l~~i~~~~~~~~~~~~  452 (473)
T 1sky_E          380 LQDIIAILGMDELSDEDKLVVHRARRIQFFLSQNFHVAEQFTGQPGSYVPVKETVRGFKEILEGKYDHLPEDR  452 (473)
T ss_dssp             HHHHHHHHCSTTCTTHHHHHHHHHHHHHHHTCBCCTTTHHHHSCCCCCCCHHHHHHHHHHHHTTTTTTSCGGG
T ss_pred             HHHHHHhhCcccCCHHHHHHHHHHHHHHHHHcCCchHhhhhhccCCccCCHHHHHHHHHHHhcccccCCCHHH
Confidence            4456899997 44  8899999999999999  544          567888888888888888888888764

>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*

Probab=86.45  E-value=0.52  Score=39.26  Aligned_cols=57  Identities=12%  Similarity=0.111  Sum_probs=48.2

Q ss_pred             hhHHhhhcCC-H--HHHHHHhcccchhhhc--CCC----------CCCCHHHHHHHHHHHhcCcCCCCChhh
Q psy13775         13 GYHYSNFTAR-I--GLNKSLMLSRRLPILL--GQY----------VPMAIEEQVAVIYCGVRGHLDKLDPAK   69 (119)
Q Consensus        13 ~~~Fs~Fgsd-l--~tr~~L~rG~Rl~ElL--~q~----------~Plsv~eQV~iL~a~~~G~ld~ipv~~   69 (119)
                      ..+.+.+|.| +  .++..|++|+++.+.|  +.|          ...+.++.+--|..+-+|-+|++|.+.
T Consensus       402 ~~li~i~G~d~ls~~d~~~l~~~~~i~~fL~Q~~~v~e~ft~~~g~~v~~~~t~~~l~~il~g~~d~~pe~~  473 (498)
T 1fx0_B          402 QDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDSLPEQA  473 (498)
T ss_dssp             HHHHHHHCSTTSCTTTHHHHHHHHHHHHHTCCCCSSCTTTSCSCCCCCCHHHHHHHHHTTTTTTTSSSCGGG
T ss_pred             HHHHHHhCCCcCCHHHHHHHHHHHHHHHHHcCCchHHHHhhcCCCcccCHHHHHHHHHHHhcCcccCCCHHH
Confidence            3456789998 4  8899999999999999  544          788999999999999899999998763

>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*

Probab=84.80  E-value=0.75  Score=39.18  Aligned_cols=64  Identities=13%  Similarity=0.034  Sum_probs=47.4

Q ss_pred             hcCCH---HHHHHHhcccchhh-hc--CCCCC----CCHHHHHHHHHHH------hcCcCC-CCChhhHHHHHHHHHHHH
Q psy13775         19 FTARI---GLNKSLMLSRRLPI-LL--GQYVP----MAIEEQVAVIYCG------VRGHLD-KLDPAKITTFEKEFLAHI   81 (119)
Q Consensus        19 Fgsdl---~tr~~L~rG~Rl~E-lL--~q~~P----lsv~eQV~iL~a~------~~G~ld-~ipv~~I~~fe~~ll~~l   81 (119)
                      +|.|-   ..+..|++|+++.+ .|  +.|+|    .|.++|+.+|-.+      ...+++ .+|.++|.++-..++..+
T Consensus       484 ~G~d~Ls~~dk~~l~~a~~i~e~fL~Q~~f~~~d~~~~~~kq~~~l~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  563 (600)
T 3vr4_A          484 VGIDSLSDNDRLTLEVAKSIREDYLQQNAFDDVDTFTSREKQFNMLKVILTFGKEARKALSLGAYFNEIMEGTVAVRERI  563 (600)
T ss_dssp             TCGGGSCHHHHHHHHHHHHHHHHTTCCCTTSTTTTCCCHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHCHHHHHHH
T ss_pred             cCCccCCHHHHHHHHHHHHHHHHhCCCCCcCCccccCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHH
Confidence            78884   99999999999986 77  77888    8999999776554      222333 588999988644555555


Q ss_pred             H
Q psy13775         82 K   82 (119)
Q Consensus        82 ~   82 (119)
                      .
T Consensus       564 ~  564 (600)
T 3vr4_A          564 S  564 (600)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A

Probab=83.83  E-value=1.5  Score=37.29  Aligned_cols=62  Identities=15%  Similarity=0.181  Sum_probs=45.0

Q ss_pred             hcCC-H--HHHHHHhcccchhh-hc--CCCCCC----CHHHHHHHHHHHh------cCcCC-CCChhhHHHHHHHHHHHH
Q psy13775         19 FTAR-I--GLNKSLMLSRRLPI-LL--GQYVPM----AIEEQVAVIYCGV------RGHLD-KLDPAKITTFEKEFLAHI   81 (119)
Q Consensus        19 Fgsd-l--~tr~~L~rG~Rl~E-lL--~q~~Pl----sv~eQV~iL~a~~------~G~ld-~ipv~~I~~fe~~ll~~l   81 (119)
                      +|.| |  ..+..|++|+++.| .|  +.|+|+    |.++|+.+|-.+.      ..++. .++.++|.+.  .+...+
T Consensus       479 ~G~d~Ls~~dk~~l~~ar~i~e~fL~Q~~f~~~d~~~~~~k~~~~l~~i~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~  556 (588)
T 3mfy_A          479 VGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFYDKTMEAINRGVPLEEIAKL--PVREEI  556 (588)
T ss_dssp             HCSTTCCHHHHHHHHHHHHHHHHTTCCCTTSTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHTC--HHHHHH
T ss_pred             cCCccCCHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhcC--cHHHHH
Confidence            8999 4  99999999999986 77  889999    9999998766541      12222 4788888772  344444


Q ss_pred             H
Q psy13775         82 K   82 (119)
Q Consensus        82 ~   82 (119)
                      .
T Consensus       557 ~  557 (588)
T 3mfy_A          557 G  557 (588)
T ss_dssp             T
T ss_pred             H
Confidence            3

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	119
d2jdia1	131	a.69.1.1 (A:380-510) F1 ATP synthase alpha subunit	9e-21
d1fx0a1	129	a.69.1.1 (A:373-501) F1 ATP synthase alpha subunit	2e-19
d1skyb1	131	a.69.1.1 (B:372-502) F1 ATP synthase alpha subunit	1e-17

>d2jdia1 a.69.1.1 (A:380-510) F1 ATP synthase alpha subunit, domain 3 {Cow (Bos taurus) [TaxId: 9913]} Length = 131

class: All alpha proteins
fold: Left-handed superhelix
superfamily: C-terminal domain of alpha and beta subunits of F1 ATP synthase
family: C-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase alpha subunit, domain 3
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.8 bits (194), Expect = 9e-21
 Identities = 52/78 (66%), Positives = 64/78 (82%)

Query: 40  GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKIT 99
           GQY PMAIEEQVAVIY GVRG+LDKL+P+KIT FE  FL+H+ S  + LL  I+ +GKI+
Sbjct: 52  GQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTDGKIS 111

Query: 100 EDTDAKLKTVVTNFLANF 117
           E++DAKLK +VTNFLA F
Sbjct: 112 EESDAKLKEIVTNFLAGF 129

>d1fx0a1 a.69.1.1 (A:373-501) F1 ATP synthase alpha subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} Length = 129

class: All alpha proteins
fold: Left-handed superhelix
superfamily: C-terminal domain of alpha and beta subunits of F1 ATP synthase
family: C-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase alpha subunit, domain 3
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

 Score = 75.3 bits (185), Expect = 2e-19
 Identities = 23/78 (29%), Positives = 39/78 (50%)

Query: 40  GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKIT 99
            Q  P+ +EEQV  IY G  G+LD L+  ++  +  E   ++K+++    E I      T
Sbjct: 52  PQSAPLTVEEQVMTIYTGTNGYLDSLELDQVRKYLVELRTYVKTNKPEFQEIISSTKTFT 111

Query: 100 EDTDAKLKTVVTNFLANF 117
           E+ +A LK  +   +  F
Sbjct: 112 EEAEALLKEAIQEQMERF 129

>d1skyb1 a.69.1.1 (B:372-502) F1 ATP synthase alpha subunit, domain 3 {Bacillus sp., strain ps3 [TaxId: 1409]} Length = 131

class: All alpha proteins
fold: Left-handed superhelix
superfamily: C-terminal domain of alpha and beta subunits of F1 ATP synthase
family: C-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase alpha subunit, domain 3
species: Bacillus sp., strain ps3 [TaxId: 1409]

 Score = 70.7 bits (173), Expect = 1e-17
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 40  GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKIT 99
             + P+ +E+QV +IY   RG LD +    +  FEKEF   +  + + LLE I+    + 
Sbjct: 52  DLHQPIPVEKQVLIIYALTRGFLDDIPVEDVRRFEKEFYLWLDQNGQHLLEHIRTTKDLP 111

Query: 100 EDTDAKLKTVVTNFLANFT 118
              +  L   +  F   F 
Sbjct: 112 N--EDDLNQAIEAFKKTFV 128

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	119
d2jdia1	131	F1 ATP synthase alpha subunit, domain 3 {Cow (Bos	100.0
d1fx0a1	129	F1 ATP synthase alpha subunit, domain 3 {Spinach (	100.0
d1skyb1	131	F1 ATP synthase alpha subunit, domain 3 {Bacillus	100.0
d1x9fd_	140	Extracellular dodecameric hemoglobin (erythrocruor	92.06
d1x9fb_	145	Extracellular dodecameric hemoglobin (erythrocruor	91.69
d1x9fc_	149	Extracellular dodecameric hemoglobin (erythrocruor	86.68
d1x9fa_	147	Extracellular dodecameric hemoglobin (erythrocruor	86.58
d1outa_	142	Hemoglobin, alpha-chain {Trout (Oncorhynchus mykis	85.98
d3d1ka1	142	Hemoglobin, alpha-chain {Antarctic fish (Trematomu	84.85
d1pb6a2	126	Hypothetical transcriptional regulator YcdC {Esche	82.83
d1xq5a_	142	Hemoglobin, alpha-chain {Yellow perch (Perca flave	80.91

>d2jdia1 a.69.1.1 (A:380-510) F1 ATP synthase alpha subunit, domain 3 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Left-handed superhelix
superfamily: C-terminal domain of alpha and beta subunits of F1 ATP synthase
family: C-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase alpha subunit, domain 3
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.1e-39  Score=227.77  Aligned_cols=107  Identities=54%  Similarity=0.844  Sum_probs=104.5

Q ss_pred             hhHHhhhcCCH--HHHHHHhcccchhhhc--CCCCCCCHHHHHHHHHHHhcCcCCCCChhhHHHHHHHHHHHHHhchhHH
Q psy13775         13 GYHYSNFTARI--GLNKSLMLSRRLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGL   88 (119)
Q Consensus        13 ~~~Fs~Fgsdl--~tr~~L~rG~Rl~ElL--~q~~Plsv~eQV~iL~a~~~G~ld~ipv~~I~~fe~~ll~~l~~~~~~~   88 (119)
                      -++||||||||  +||++|+||+|++|||  |||+|||+++||++|||+++||||+||+++|.+|++++++|++++||++
T Consensus        21 le~FaqF~sdlD~~t~~~l~rG~rl~ElLKQ~q~~Pl~v~eQv~iL~A~~~G~lD~i~v~~I~~fe~~ll~~l~~~~~~~  100 (131)
T d2jdia1          21 VAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQAL  100 (131)
T ss_dssp             TGGGSSSCSSSCHHHHHHHHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHTTTTTTSCGGGHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHhhhhhhhHHHHhhhhhHHHHHHHHhcccccchhHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHhCHHH
Confidence            37899999999  9999999999999999  9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHhcCC
Q psy13775         89 LESIKKEGKITEDTDAKLKTVVTNFLANFTG  119 (119)
Q Consensus        89 ~~~I~~~~~l~~~~~~~L~~~i~~~~~~f~~  119 (119)
                      ++.|..++++++++++.|++++++|+++|+.
T Consensus       101 l~~I~~~~~l~de~~~~L~~ai~~f~~~F~a  131 (131)
T d2jdia1         101 LGKIRTDGKISEESDAKLKEIVTNFLAGFEA  131 (131)
T ss_dssp             HHHHHHHTSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHccC
Confidence            9999999999999999999999999999864

>d1fx0a1 a.69.1.1 (A:373-501) F1 ATP synthase alpha subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: All alpha proteins
fold: Left-handed superhelix
superfamily: C-terminal domain of alpha and beta subunits of F1 ATP synthase
family: C-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase alpha subunit, domain 3
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=100.00  E-value=6.1e-39  Score=225.02  Aligned_cols=105  Identities=28%  Similarity=0.449  Sum_probs=103.0

Q ss_pred             hhHHhhhcCCH--HHHHHHhcccchhhhc--CCCCCCCHHHHHHHHHHHhcCcCCCCChhhHHHHHHHHHHHHHhchhHH
Q psy13775         13 GYHYSNFTARI--GLNKSLMLSRRLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGL   88 (119)
Q Consensus        13 ~~~Fs~Fgsdl--~tr~~L~rG~Rl~ElL--~q~~Plsv~eQV~iL~a~~~G~ld~ipv~~I~~fe~~ll~~l~~~~~~~   88 (119)
                      -++||||||||  +|+++|+||+|++|+|  |||+|||+++||++|||+++||||+||+++|.+|++++++|++++||++
T Consensus        21 l~aFaqfgsdlD~~t~~~l~rG~rl~ElLKQ~q~~Pl~v~eQv~iLyA~~~G~LD~ipv~~I~~fe~~ll~~l~~~~~~i  100 (129)
T d1fx0a1          21 LEAFAQFASDLDKATQNQLARGQRLRELLKQPQSAPLTVEEQVMTIYTGTNGYLDSLELDQVRKYLVELRTYVKTNKPEF  100 (129)
T ss_dssp             HTTTGGGCSSCCHHHHHHHHHHHHHHHHHCCCTTCCCCHHHHHHHHHHHHTTSSSSSCHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHhhccchhHHHHHhhhHHHHHHHHHHcccccCCCHHHHHHHHHHHHcCccccCCHHHHHHHHHHHHHHHHHhhHHH
Confidence            37899999999  9999999999999999  9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHhc
Q psy13775         89 LESIKKEGKITEDTDAKLKTVVTNFLANF  117 (119)
Q Consensus        89 ~~~I~~~~~l~~~~~~~L~~~i~~~~~~f  117 (119)
                      ++.|..+++++|++++.|++++++|++.|
T Consensus       101 l~~I~~~~~ltde~~~~L~~~i~~f~~~F  129 (129)
T d1fx0a1         101 QEIISSTKTFTEEAEALLKEAIQEQMERF  129 (129)
T ss_dssp             HHHHHHHTSCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999887

>d1skyb1 a.69.1.1 (B:372-502) F1 ATP synthase alpha subunit, domain 3 {Bacillus sp., strain ps3 [TaxId: 1409]}

class: All alpha proteins
fold: Left-handed superhelix
superfamily: C-terminal domain of alpha and beta subunits of F1 ATP synthase
family: C-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase alpha subunit, domain 3
species: Bacillus sp., strain ps3 [TaxId: 1409]

Probab=100.00  E-value=5.7e-38  Score=220.55  Aligned_cols=104  Identities=24%  Similarity=0.434  Sum_probs=97.9

Q ss_pred             hhHHhhhcCCH--HHHHHHhcccchhhhc--CCCCCCCHHHHHHHHHHHhcCcCCCCChhhHHHHHHHHHHHHHhchhHH
Q psy13775         13 GYHYSNFTARI--GLNKSLMLSRRLPILL--GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGL   88 (119)
Q Consensus        13 ~~~Fs~Fgsdl--~tr~~L~rG~Rl~ElL--~q~~Plsv~eQV~iL~a~~~G~ld~ipv~~I~~fe~~ll~~l~~~~~~~   88 (119)
                      -++||||||||  +|+++|+||+|++|||  |||+|||+++||++|||+++||||+||+++|.+|++.+++|++++||++
T Consensus        21 le~FaqFgsdLD~~t~~~L~rG~rl~ElLKQ~q~sP~~v~eQv~iLyA~~~G~LD~Ipv~~I~~fe~~ll~~l~~~~~~~  100 (131)
T d1skyb1          21 LEAFAQFGSDLDKATQANVARGARTVEVLKQDLHQPIPVEKQVLIIYALTRGFLDDIPVEDVRRFEKEFYLWLDQNGQHL  100 (131)
T ss_dssp             HC-CCCC-CC-CHHHHHHHHHHHHHHHHHCCCTTCCCCHHHHHHHHHHTTTTTTTTSCGGGHHHHHHHHHHHHHHGGGGT
T ss_pred             HHHHHHHhhhhhHHHHHHHHhhHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCccccCcHHHHHHHHHHHHHHHHHhhHHH
Confidence            37899999999  9999999999999999  9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHhcC
Q psy13775         89 LESIKKEGKITEDTDAKLKTVVTNFLANFT  118 (119)
Q Consensus        89 ~~~I~~~~~l~~~~~~~L~~~i~~~~~~f~  118 (119)
                      ++.|..+++++++  +.|++++++|+++|.
T Consensus       101 l~~I~~~~~l~de--~~L~~~i~~fk~~F~  128 (131)
T d1skyb1         101 LEHIRTTKDLPNE--DDLNQAIEAFKKTFV  128 (131)
T ss_dssp             HHHHHHHSCCCHH--HHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCCCcH--HHHHHHHHHHHHHcc
Confidence            9999999999985  679999999999985

>d1x9fd_ a.1.1.2 (D:) Extracellular dodecameric hemoglobin (erythrocruorin), subunit D1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: All alpha proteins
fold: Globin-like
superfamily: Globin-like
family: Globins
domain: Extracellular dodecameric hemoglobin (erythrocruorin), subunit D1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=92.06  E-value=0.29  Score=31.51  Aligned_cols=92  Identities=13%  Similarity=-0.016  Sum_probs=64.4

Q ss_pred             hhhHHhhhcCCH-HHHHHHhcccchhhhc-----CCCCCCCHHHHHHHHHHHhcCcCCCCChhhHHHHHHHHHHHHHhch
Q psy13775         12 AGYHYSNFTARI-GLNKSLMLSRRLPILL-----GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSE   85 (119)
Q Consensus        12 ~~~~Fs~Fgsdl-~tr~~L~rG~Rl~ElL-----~q~~Plsv~eQV~iL~a~~~G~ld~ipv~~I~~fe~~ll~~l~~~~   85 (119)
                      .-..|++|+.+. .+.+--.||.|++..|     .-..|-.....+.-| +..+.- -+|+.+....|...++.++...-
T Consensus        42 ~~~~F~~~~~~~~~s~~~~~H~~~v~~~l~~~V~~Ldd~~~l~~~l~~L-g~~H~~-~gV~~~~f~~~~~~ll~~l~~~l  119 (140)
T d1x9fd_          42 IKAPFSRVRGDNIYSPEFGAHSQRVLSGLDITISMLDTPDMLAAQLAHL-KVQHVE-RNLKPEFFDIFLKHLLHVLGDRL  119 (140)
T ss_dssp             GGGGGGGGTTTCTTSHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH-HHHHHT-SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcccccccCccCHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH-hhhHHh-cCCCHHHHHHHHHHHHHHHHHHc
Confidence            456899999888 7777889999999998     444544443333322 233322 37999999999999999997531


Q ss_pred             hHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q psy13775         86 RGLLESIKKEGKITEDTDAKLKTVVTNFL  114 (119)
Q Consensus        86 ~~~~~~I~~~~~l~~~~~~~L~~~i~~~~  114 (119)
                               +..++++.++.+.+.|.+.+
T Consensus       120 ---------g~~~t~~AW~~~~~~i~~~i  139 (140)
T d1x9fd_         120 ---------GTHFDFGAWHDCVDQIIDGI  139 (140)
T ss_dssp             ---------GGGCCHHHHHHHHHHHHHHH
T ss_pred             ---------CccCCHHHHHHHHHHHHHHh
Confidence                     34467788887777776543

>d1x9fb_ a.1.1.2 (B:) Extracellular dodecameric hemoglobin (erythrocruorin), subunit II (globin B) {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: All alpha proteins
fold: Globin-like
superfamily: Globin-like
family: Globins
domain: Extracellular dodecameric hemoglobin (erythrocruorin), subunit II (globin B)
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=91.69  E-value=0.47  Score=30.65  Aligned_cols=93  Identities=6%  Similarity=-0.035  Sum_probs=65.5

Q ss_pred             hhhHHhhhcCCH-HHHHHHhcccchhhhc----CC-CCCCCHHHHHHHHHHHhcCcCCCCChhhHHHHHHHHHHHHHhch
Q psy13775         12 AGYHYSNFTARI-GLNKSLMLSRRLPILL----GQ-YVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSE   85 (119)
Q Consensus        12 ~~~~Fs~Fgsdl-~tr~~L~rG~Rl~ElL----~q-~~Plsv~eQV~iL~a~~~G~ld~ipv~~I~~fe~~ll~~l~~~~   85 (119)
                      ...+|++|+.+. .+.+...||.|++..|    .. ..|-... -.+.-++..+.- -.|+.+....|...++.++....
T Consensus        44 ~~~~F~~~~~~~~~~~~~~~H~~~v~~~l~~~I~~Ldd~~~l~-~~L~~lg~~H~~-~gv~~~~f~~~~~~l~~~l~~~l  121 (145)
T d1x9fb_          44 SRSLFKRVHGDDTSHPAFIAHADRVLGGLDIAISTLDQPATLK-EELDHLQVQHEG-RKIPDNYFDAFKTAILHVVAAQL  121 (145)
T ss_dssp             GGGGGGGGTTTCTTSHHHHHHHHHHHHHHHHHHHTTTCHHHHH-HHHHHHHHHHTT-SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhcccCCccCHHHHHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHhhcccc-cCCCHHHHHHHHHHHHHHHHHHc
Confidence            456899999888 7777889999999988    33 3333222 222223333332 37999999999999999997531


Q ss_pred             hHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy13775         86 RGLLESIKKEGKITEDTDAKLKTVVTNFLA  115 (119)
Q Consensus        86 ~~~~~~I~~~~~l~~~~~~~L~~~i~~~~~  115 (119)
                               +..++++.+..+-..|.+.++
T Consensus       122 ---------g~~~~~~AW~~~~~~i~~~ik  142 (145)
T d1x9fb_         122 ---------GRCYDREAWDACIDHIEDGIK  142 (145)
T ss_dssp             ---------TTSCCHHHHHHHHHHHHHHHH
T ss_pred             ---------CCcCCHHHHHHHHHHHHHHHh
Confidence                     345788888888888877665

>d1x9fc_ a.1.1.2 (C:) Extracellular dodecameric hemoglobin (erythrocruorin), subunit III (globin C) {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: All alpha proteins
fold: Globin-like
superfamily: Globin-like
family: Globins
domain: Extracellular dodecameric hemoglobin (erythrocruorin), subunit III (globin C)
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=86.68  E-value=1.5  Score=28.06  Aligned_cols=94  Identities=7%  Similarity=-0.079  Sum_probs=64.0

Q ss_pred             chhhHHhhhcCCH-HHHHHHhcccchhhhc-----CCCCCCCHHHHHHHHHHHhcCcCCCCChhhHHHHHHHHHHHHHhc
Q psy13775         11 KAGYHYSNFTARI-GLNKSLMLSRRLPILL-----GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSS   84 (119)
Q Consensus        11 ~~~~~Fs~Fgsdl-~tr~~L~rG~Rl~ElL-----~q~~Plsv~eQV~iL~a~~~G~ld~ipv~~I~~fe~~ll~~l~~~   84 (119)
                      ....+|.+|+.++ .+.....||.|++..|     .-..|=.. +..+.-.+..+--...|+.+....|...++.++...
T Consensus        47 ~~k~~F~~~~~~~~~~~~~~~Ha~~v~~~l~~~I~~ldd~~~l-~~~L~~lg~~H~~r~gv~~~~f~~~~~~l~~~l~~~  125 (149)
T d1x9fc_          47 EVNDLFKRVDIEHAEGPKFSAHALRILNGLDLAINLLDDPPAL-DAALDHLAHQHEVREGVQKAHFKKFGEILATGLPQV  125 (149)
T ss_dssp             THHHHTGGGTGGGTTSHHHHHHHHHHHHHHHHHHHTTTCHHHH-HHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHhcccccccccccHHHHHHHHHHHHHHHHHHHhhccHHHH-HHHHHHHHHhHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            4567899999888 7788889999999998     33333222 222333344442224899999999999999999643


Q ss_pred             hhHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy13775         85 ERGLLESIKKEGKITEDTDAKLKTVVTNFLA  115 (119)
Q Consensus        85 ~~~~~~~I~~~~~l~~~~~~~L~~~i~~~~~  115 (119)
                      -          +..+++.+..+.+.|.+.+.
T Consensus       126 l----------~~~~~~AW~~~~~~i~~~i~  146 (149)
T d1x9fc_         126 L----------DDYDALAWKSCLKGILTKIS  146 (149)
T ss_dssp             C----------SCCCHHHHHHHHHHHHHHHH
T ss_pred             c----------ChhhHHHHHHHHHHHHHHHH
Confidence            1          23567777777777766543

>d1x9fa_ a.1.1.2 (A:) Extracellular dodecameric hemoglobin (erythrocruorin), subunit IV (globin A) {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: All alpha proteins
fold: Globin-like
superfamily: Globin-like
family: Globins
domain: Extracellular dodecameric hemoglobin (erythrocruorin), subunit IV (globin A)
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=86.58  E-value=1.3  Score=28.37  Aligned_cols=95  Identities=5%  Similarity=-0.114  Sum_probs=64.8

Q ss_pred             chhhHHhhhcCCH-HHHHHHhcccchhhhc----CCCCCCCHHHHHHHHHHHhcCcCCCCChhhHHHHHHHHHHHHHhch
Q psy13775         11 KAGYHYSNFTARI-GLNKSLMLSRRLPILL----GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSE   85 (119)
Q Consensus        11 ~~~~~Fs~Fgsdl-~tr~~L~rG~Rl~ElL----~q~~Plsv~eQV~iL~a~~~G~ld~ipv~~I~~fe~~ll~~l~~~~   85 (119)
                      ....+|.+|..+. .+...-.|+.|++..|    ....-...-+..+.=.+..+--...|+.+....|...++.++.+. 
T Consensus        44 ~~k~~F~~~~~~~~~~~~~~~ha~~v~~~l~~~V~~Ldd~~~l~~~l~~lg~~H~~r~gv~~~~f~~~~~~l~~~l~~~-  122 (147)
T d1x9fa_          44 TSKALFERVKIDEPESGEFKSHLVRVANGLKLLINLLDDTLVLQSHLGHLADQHIQRKGVTKEYFRGIGEAFARVLPQV-  122 (147)
T ss_dssp             GGGGGGTTTTTTSTTSSHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHhhhccccCcCCHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHH-
Confidence            4567899998888 7777888999999988    333322222333334444552224799999999999999999643 


Q ss_pred             hHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy13775         86 RGLLESIKKEGKITEDTDAKLKTVVTNFLA  115 (119)
Q Consensus        86 ~~~~~~I~~~~~l~~~~~~~L~~~i~~~~~  115 (119)
                               -+..+.+.+..+-+.|...+.
T Consensus       123 ---------l~~~~~~AW~~~~~~i~~~i~  143 (147)
T d1x9fa_         123 ---------LSCFNVDAWNRCFHRLVARIA  143 (147)
T ss_dssp             ---------CSSCCHHHHHHHHHHHHHHHT
T ss_pred             ---------cCcccHHHHHHHHHHHHHHHH
Confidence                     123567777777777766544

>d1outa_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Trout (Oncorhynchus mykiss) [TaxId: 8022]}

class: All alpha proteins
fold: Globin-like
superfamily: Globin-like
family: Globins
domain: Hemoglobin, alpha-chain
species: Trout (Oncorhynchus mykiss) [TaxId: 8022]

Probab=85.98  E-value=1.2  Score=28.48  Aligned_cols=84  Identities=7%  Similarity=0.017  Sum_probs=56.1

Q ss_pred             chhhHHhhhcCCH-HHHHHHhcccchhhhc-----CCCCCCCHHHHHHHHHHHhcCcCCCCChhhHHHHHHHHHHHHHhc
Q psy13775         11 KAGYHYSNFTARI-GLNKSLMLSRRLPILL-----GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSS   84 (119)
Q Consensus        11 ~~~~~Fs~Fgsdl-~tr~~L~rG~Rl~ElL-----~q~~Plsv~eQV~iL~a~~~G~ld~ipv~~I~~fe~~ll~~l~~~   84 (119)
                      ....+|..|+..+ ...+.-.||.|++..+     +...+-+.-..+.-......    .|++++...+...|+..|...
T Consensus        38 ~~~~~F~~~~~~~~~~~~~~~H~~~v~~~l~~~i~~l~~~~~~l~~L~~~H~~~~----~V~~~~f~~~~~~ll~~l~~~  113 (142)
T d1outa_          38 QTKTYFSHWADLSPGSGPVKKHGGIIMGAIGKAVGLMDDLVGGMSALSDLHAFKL----RVDPGNFKILSHNILVTLAIH  113 (142)
T ss_dssp             GGGGGGTTSSCCSTTCHHHHHHHHHHHHHHHHHHHTTTCHHHHTHHHHHHHHHTT----CCCTHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHcccccccccccHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHHH
Confidence            3567899998877 7777888999999988     34433333333333332221    589999999999999988643


Q ss_pred             hhHHHHHHHhcCCCCHHHHHHHH
Q psy13775         85 ERGLLESIKKEGKITEDTDAKLK  107 (119)
Q Consensus        85 ~~~~~~~I~~~~~l~~~~~~~L~  107 (119)
                               -+..++++..+.=.
T Consensus       114 ---------lg~~~t~e~~~AW~  127 (142)
T d1outa_         114 ---------FPSDFTPEVHIAVD  127 (142)
T ss_dssp             ---------CTTTCCHHHHHHHH
T ss_pred             ---------ccccCCHHHHHHHH
Confidence                     25568887554433

>d3d1ka1 a.1.1.2 (A:1-142) Hemoglobin, alpha-chain {Antarctic fish (Trematomus newnesi) [TaxId: 35730]}

class: All alpha proteins
fold: Globin-like
superfamily: Globin-like
family: Globins
domain: Hemoglobin, alpha-chain
species: Antarctic fish (Trematomus newnesi) [TaxId: 35730]

Probab=84.85  E-value=1.9  Score=27.37  Aligned_cols=89  Identities=9%  Similarity=0.089  Sum_probs=59.4

Q ss_pred             chhhHHhhhcCCH-HHHHHHhcccchhhhc-----CCCCCCCHHHHHHHHHHHhcCcCCCCChhhHHHHHHHHHHHHHhc
Q psy13775         11 KAGYHYSNFTARI-GLNKSLMLSRRLPILL-----GQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSS   84 (119)
Q Consensus        11 ~~~~~Fs~Fgsdl-~tr~~L~rG~Rl~ElL-----~q~~Plsv~eQV~iL~a~~~G~ld~ipv~~I~~fe~~ll~~l~~~   84 (119)
                      .....|.+|+.++ +..+...||.|++.-|     +.-.   .+.-+..|.-..+.- -.|+.+....+...++..|...
T Consensus        38 ~~~~~F~~f~~~~~~~~~~~~H~~~v~~~l~~~i~~ld~---~~~~~~~L~~~~~~~-~~v~~~~f~~~~~~ll~~l~~~  113 (142)
T d3d1ka1          38 QTKIYFSHWPDVTPGSPNIKAHGKKVMGGIALAVSKIDD---LKTGLMELSEQHAYK-LRVDPSNFKILNHCILVVISTM  113 (142)
T ss_dssp             GGGGGGTTSSCCSTTCHHHHHHHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHT-SCCCGGGHHHHHHHHHHHHHHH
T ss_pred             hHHHhhhhccccCccCHHHHHHHHHHHHHHHHHHhcccc---HHHHHHHHHHhChhh-ccCchhHHHHHHHHHHHHHHHh
Confidence            4567899999888 8888889999999888     3332   333233332211222 3799999999999999988653


Q ss_pred             hhHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy13775         85 ERGLLESIKKEGKITEDTDAKLKTVVTN  112 (119)
Q Consensus        85 ~~~~~~~I~~~~~l~~~~~~~L~~~i~~  112 (119)
                               -+..+|++..+.-.+.+..
T Consensus       114 ---------lg~~~t~e~~~AW~k~~~~  132 (142)
T d3d1ka1         114 ---------FPKEFTPEAHVSLDKFLSG  132 (142)
T ss_dssp             ---------CTTTCCHHHHHHHHHHHHH
T ss_pred             ---------CccCCCHHHHHHHHHHHHH
Confidence                     3556777765555544443

>d1pb6a2 a.121.1.1 (A:86-211) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Tetracyclin repressor-like, C-terminal domain
superfamily: Tetracyclin repressor-like, C-terminal domain
family: Tetracyclin repressor-like, C-terminal domain
domain: Hypothetical transcriptional regulator YcdC
species: Escherichia coli [TaxId: 562]

Probab=82.83  E-value=3.7  Score=25.32  Aligned_cols=89  Identities=17%  Similarity=0.064  Sum_probs=64.5

Q ss_pred             HHHHHHhcccchhhhc-CCCCCCCHHHHHHHH-HHHhcCcCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHhcCCCCHH
Q psy13775         24 GLNKSLMLSRRLPILL-GQYVPMAIEEQVAVI-YCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITED  101 (119)
Q Consensus        24 ~tr~~L~rG~Rl~ElL-~q~~Plsv~eQV~iL-~a~~~G~ld~ipv~~I~~fe~~ll~~l~~~~~~~~~~I~~~~~l~~~  101 (119)
                      -++..+..|.++.+.+ ..+.|.- ...+.+| =....|.++.+++..+--..-.+..+--.+. ..++.+.....++++
T Consensus        29 ~~~E~~~~~~~l~~~~~~~~~~~~-~~~~~il~~g~~~G~~r~vdp~~l~~~I~~~~~~y~~~~-~~~~~l~g~~~~~~~  106 (126)
T d1pb6a2          29 FCMEMLAGAPLLMDELTGDLKALI-DEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFA-PQVEAVTGATLRDEV  106 (126)
T ss_dssp             HHHHHHTTCTTTHHHHHTHHHHHH-HHHHHHHHHHHHTTSSCSCCHHHHHHHHHHHHHHHHHTH-HHHHHHHSCCTTSHH
T ss_pred             HHHHHhcCCchhHHHHHHHHHHHH-HHHHHHHHHHHHCCCcccCCHHHHHHHHHHHHHHHHhHH-HHHHHHcCCCcCCHH
Confidence            5677899999999999 8887753 3333333 4457799999999988877777777665553 455666677778888


Q ss_pred             HHHHHHHHHHHHH
Q psy13775        102 TDAKLKTVVTNFL  114 (119)
Q Consensus       102 ~~~~L~~~i~~~~  114 (119)
                      ..+...+.+.+++
T Consensus       107 ~~e~~~~~v~~lv  119 (126)
T d1pb6a2         107 FFNQTVENVQRII  119 (126)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8887777776664

>d1xq5a_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Yellow perch (Perca flavescens) [TaxId: 8167]}

class: All alpha proteins
fold: Globin-like
superfamily: Globin-like
family: Globins
domain: Hemoglobin, alpha-chain
species: Yellow perch (Perca flavescens) [TaxId: 8167]

Probab=80.91  E-value=1.6  Score=27.73  Aligned_cols=86  Identities=9%  Similarity=0.052  Sum_probs=55.2

Q ss_pred             hhhHHhhhcCCH-HHHHHHhcccchhhhc--CCCCCCCHHHHHHHHHHHhc-CcCCCCChhhHHHHHHHHHHHHHhchhH
Q psy13775         12 AGYHYSNFTARI-GLNKSLMLSRRLPILL--GQYVPMAIEEQVAVIYCGVR-GHLDKLDPAKITTFEKEFLAHIKSSERG   87 (119)
Q Consensus        12 ~~~~Fs~Fgsdl-~tr~~L~rG~Rl~ElL--~q~~Plsv~eQV~iL~a~~~-G~ld~ipv~~I~~fe~~ll~~l~~~~~~   87 (119)
                      ...+|.+|+... +......||.|++..|  .--.|=..+ .++.-.+..+ +-+ .|+.+....+...++..|....  
T Consensus        39 ~~~~F~~f~~~~~~~~~~~~H~~~v~~~l~~~v~~ld~l~-~~l~~l~~~H~~~~-~v~~~~f~~~~~~ll~~l~~~l--  114 (142)
T d1xq5a_          39 TKTYFSHWKDLSPGSAPVNKHGKTIMGGIVDAVASIDDLN-AGLLALSELHAFTL-RVDPANFKILSHCILVLLAVKF--  114 (142)
T ss_dssp             GGGGGTTCSCCSTTSHHHHHHHHHHHHHHHHHHHTTTCHH-HHTHHHHHHHHHTS-CCCTHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHhccccccCCCChhHHHHHHHHHHHHHHHHhcchhhH-HHHHHHHHhCcccc-CCCcHHHHHHHHHHHHHHHHHc--
Confidence            467899998777 7888889999999888  111222222 2222222222 212 6999999999999999886532  


Q ss_pred             HHHHHHhcCCCCHHHHHHHHH
Q psy13775         88 LLESIKKEGKITEDTDAKLKT  108 (119)
Q Consensus        88 ~~~~I~~~~~l~~~~~~~L~~  108 (119)
                             +..++++..+.=.+
T Consensus       115 -------g~~~t~e~~~AW~k  128 (142)
T d1xq5a_         115 -------PKDFTPEVHISYDK  128 (142)
T ss_dssp             -------GGGCCHHHHHHHHH
T ss_pred             -------cCCCCHHHHHHHHH
Confidence                   34477765554333