Psyllid ID: psy13777

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-
Protein Sequence
MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFTG
Secondary Structure (PSIPRED)
ccHHHHHcHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
HHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLkqgqyvpmaIEEQVAVIYCGvrghldkldpakiTTFEKEFLAHIKSSERGLLESIKKegkitedtdAKLKTVVTNFLANFTG
Flexible Loop (DISEMBL)
MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAhiksserglleSIKKegkitedtdaklkTVVTNFLANFTG
Low Complexity Region (SEG)
MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFTG
Disordered region (IsUnstruct)
******QYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIK**********************KLKTVVTNFLA****
Disordered Region (DISOPRED)
MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT*
Disordered Region (DISEMBL)
MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFTG
Disordered Region (DISPRO)
MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFTG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	121	2.2.26 [Sep-21-2011]
P35381	552	ATP synthase subunit alph	yes	N/A	1.0	0.219	0.809	5e-54
Q9XXK1	538	ATP synthase subunit alph	no	N/A	0.983	0.221	0.773	2e-50
P08428	545	ATP synthase subunit alph	N/A	N/A	0.983	0.218	0.781	6e-50
P19483	553	ATP synthase subunit alph	yes	N/A	0.983	0.215	0.773	3e-49
P15999	553	ATP synthase subunit alph	yes	N/A	0.983	0.215	0.773	4e-49
Q5R546	553	ATP synthase subunit alph	yes	N/A	0.983	0.215	0.773	5e-49
A5A6H5	553	ATP synthase subunit alph	yes	N/A	0.983	0.215	0.773	5e-49
P25705	553	ATP synthase subunit alph	yes	N/A	0.983	0.215	0.773	5e-49
Q03265	553	ATP synthase subunit alph	yes	N/A	0.983	0.215	0.773	5e-49
A7HT50	509	ATP synthase subunit alph	yes	N/A	0.991	0.235	0.616	1e-37

>sp|P35381|ATPA_DROME ATP synthase subunit alpha, mitochondrial OS=Drosophila melanogaster GN=blw PE=1 SV=2

 Score =  209 bits (532), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 98/121 (80%), Positives = 110/121 (90%)

Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIE+QVAVIYCGV
Sbjct: 432 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEDQVAVIYCGV 491

Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT 120
           RGHLDK+DPAKIT FEKEFL HIK+SE+ LL++I K+G I+E +DAKLK +V  F++ F 
Sbjct: 492 RGHLDKMDPAKITKFEKEFLQHIKTSEQALLDTIAKDGAISEASDAKLKDIVAKFMSTFQ 551

Query: 121 G 121
           G
Sbjct: 552 G 552

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits. Subunit alpha does not bear the catalytic high-affinity ATP-binding sites.
Drosophila melanogaster (taxid: 7227)

>sp|Q9XXK1|ATPA_CAEEL ATP synthase subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=H28O16.1 PE=1 SV=1

 Score =  197 bits (500), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 92/119 (77%), Positives = 108/119 (90%)

Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           MKLELAQYREVAAFAQFGSDLDA+TQQLLNRGVRLTELLKQGQYVPM IEEQV VIY GV
Sbjct: 418 MKLELAQYREVAAFAQFGSDLDASTQQLLNRGVRLTELLKQGQYVPMGIEEQVGVIYAGV 477

Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
           +G+LDK+DP+ IT FEKEFLAH++SS++ LL++I++EG+I+  TDA+LK VV NFLA F
Sbjct: 478 KGYLDKVDPSAITKFEKEFLAHLRSSQQALLKTIREEGQISPQTDAQLKDVVVNFLATF 536

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits. Subunit alpha does not bear the catalytic high-affinity ATP-binding sites.

Caenorhabditis elegans (taxid: 6239)

>sp|P08428|ATPA_XENLA ATP synthase subunit alpha, mitochondrial OS=Xenopus laevis GN=atp5a PE=2 SV=1

 Score =  195 bits (496), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 93/119 (78%), Positives = 104/119 (87%)

Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQV VIY GV
Sbjct: 425 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVTVIYAGV 484

Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
           RGHLDK++P+KIT FE  FLAH+KS  + LL +I+ +GKI+E  DAKLK +V NFL+ F
Sbjct: 485 RGHLDKMEPSKITKFESAFLAHVKSQHQELLATIRADGKISEQADAKLKEIVLNFLSTF 543

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits. Subunit alpha does not bear the catalytic high-affinity ATP-binding sites.

Xenopus laevis (taxid: 8355)

>sp|P19483|ATPA_BOVIN ATP synthase subunit alpha, mitochondrial OS=Bos taurus GN=ATP5A1 PE=1 SV=1

 Score =  193 bits (490), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 92/119 (77%), Positives = 105/119 (88%)

Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           MKLELAQYREVAAFAQFGSDLDAATQQLL+RGVRLTELLKQGQY PMAIEEQVAVIY GV
Sbjct: 433 MKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGV 492

Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
           RG+LDKL+P+KIT FE  FL+H+ S  + LL  I+ +GKI+E++DAKLK +VTNFLA F
Sbjct: 493 RGYLDKLEPSKITKFENAFLSHVISQHQALLSKIRTDGKISEESDAKLKEIVTNFLAGF 551

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits. Subunit alpha does not bear the catalytic high-affinity ATP-binding sites.

Bos taurus (taxid: 9913)

>sp|P15999|ATPA_RAT ATP synthase subunit alpha, mitochondrial OS=Rattus norvegicus GN=Atp5a1 PE=1 SV=2

 Score =  192 bits (489), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 92/119 (77%), Positives = 105/119 (88%)

Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           MKLELAQYREVAAFAQFGSDLDAATQQLL+RGVRLTELLKQGQY PMAIEEQVAVIY GV
Sbjct: 433 MKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGV 492

Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
           RG+LDKL+P+KIT FE  FL+H+ S  + LL +I+ +GKI+E +DAKLK +VTNFLA F
Sbjct: 493 RGYLDKLEPSKITKFESAFLSHVVSQHQSLLGNIRSDGKISEQSDAKLKEIVTNFLAGF 551

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits. Subunit alpha does not bear the catalytic high-affinity ATP-binding sites.

Rattus norvegicus (taxid: 10116)

>sp|Q5R546|ATPA_PONAB ATP synthase subunit alpha, mitochondrial OS=Pongo abelii GN=ATP5A1 PE=2 SV=1

 Score =  192 bits (488), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 92/119 (77%), Positives = 105/119 (88%)

Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           MKLELAQYREVAAFAQFGSDLDAATQQLL+RGVRLTELLKQGQY PMAIEEQVAVIY GV
Sbjct: 433 MKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGV 492

Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
           RG+LDKL+P+KIT FE  FL+H+ S  + LL +I+ +GKI+E +DAKLK +VTNFLA F
Sbjct: 493 RGYLDKLEPSKITKFENAFLSHVVSQHQALLGTIRADGKISEQSDAKLKEIVTNFLAGF 551

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits. Subunit alpha does not bear the catalytic high-affinity ATP-binding sites.

Pongo abelii (taxid: 9601)

>sp|A5A6H5|ATPA_PANTR ATP synthase subunit alpha, mitochondrial OS=Pan troglodytes GN=ATP5A1 PE=2 SV=1

 Score =  192 bits (488), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 92/119 (77%), Positives = 105/119 (88%)

Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           MKLELAQYREVAAFAQFGSDLDAATQQLL+RGVRLTELLKQGQY PMAIEEQVAVIY GV
Sbjct: 433 MKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGV 492

Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
           RG+LDKL+P+KIT FE  FL+H+ S  + LL +I+ +GKI+E +DAKLK +VTNFLA F
Sbjct: 493 RGYLDKLEPSKITKFENAFLSHVVSQHQALLGTIRADGKISEQSDAKLKEIVTNFLAGF 551

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits. Subunit alpha does not bear the catalytic high-affinity ATP-binding sites.

Pan troglodytes (taxid: 9598)

>sp|P25705|ATPA_HUMAN ATP synthase subunit alpha, mitochondrial OS=Homo sapiens GN=ATP5A1 PE=1 SV=1

 Score =  192 bits (488), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 92/119 (77%), Positives = 105/119 (88%)

Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           MKLELAQYREVAAFAQFGSDLDAATQQLL+RGVRLTELLKQGQY PMAIEEQVAVIY GV
Sbjct: 433 MKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGV 492

Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
           RG+LDKL+P+KIT FE  FL+H+ S  + LL +I+ +GKI+E +DAKLK +VTNFLA F
Sbjct: 493 RGYLDKLEPSKITKFENAFLSHVVSQHQALLGTIRADGKISEQSDAKLKEIVTNFLAGF 551

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits. Subunit alpha does not bear the catalytic high-affinity ATP-binding sites.

Homo sapiens (taxid: 9606)

>sp|Q03265|ATPA_MOUSE ATP synthase subunit alpha, mitochondrial OS=Mus musculus GN=Atp5a1 PE=1 SV=1

 Score =  192 bits (488), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 92/119 (77%), Positives = 105/119 (88%)

Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           MKLELAQYREVAAFAQFGSDLDAATQQLL+RGVRLTELLKQGQY PMAIEEQVAVIY GV
Sbjct: 433 MKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGV 492

Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
           RG+LDKL+P+KIT FE  FL+H+ S  + LL +I+ +GKI+E +DAKLK +VTNFLA F
Sbjct: 493 RGYLDKLEPSKITKFENAFLSHVISQHQSLLGNIRSDGKISEQSDAKLKEIVTNFLAGF 551

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits. Subunit alpha does not bear the catalytic high-affinity ATP-binding sites.

Mus musculus (taxid: 10090)

>sp|A7HT50|ATPA_PARL1 ATP synthase subunit alpha OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=atpA PE=3 SV=1

 Score =  154 bits (389), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 74/120 (61%), Positives = 95/120 (79%)

Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           +K ELAQYRE+AAFAQFGSDLDAATQ+LLNRG RLTELLKQGQ+ P+ +EEQV VIY GV
Sbjct: 390 IKGELAQYREMAAFAQFGSDLDAATQRLLNRGARLTELLKQGQFSPLKVEEQVVVIYAGV 449

Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT 120
            G+LDKL  A +  +E++ L +I+SS  G+L++I+ E +I+ DT+AKLK+ V NF   F 
Sbjct: 450 NGYLDKLPVADVGRYEQDLLRNIRSSHPGILDAIRSEKQISADTEAKLKSAVENFSKAFA 509

Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.

Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) (taxid: 402881)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 1

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
124487982	459	putative mitochondrial ATP synthase alph	0.991	0.261	0.916	5e-58
193666827	551	PREDICTED: ATP synthase subunit alpha, m	0.991	0.217	0.875	7e-56
52630965	551	putative mitochondrial ATP synthase alph	0.991	0.217	0.875	8e-56
242012578	552	ATP synthase subunit alpha, putative [Pe	1.0	0.219	0.834	3e-54
195430526	552	GK21455 [Drosophila willistoni] gi|19415	1.0	0.219	0.834	5e-54
332374868	551	unknown [Dendroctonus ponderosae]	1.0	0.219	0.834	6e-54
195029787	550	GH19785 [Drosophila grimshawi] gi|193903	1.0	0.22	0.834	7e-54
312370923	551	hypothetical protein AND_22861 [Anophele	1.0	0.219	0.801	7e-54
58385536	551	AGAP005134-PA [Anopheles gambiae str. PE	0.991	0.217	0.808	2e-53
289742845	552	F0F1-type ATP synthase alpha subunit [Gl	1.0	0.219	0.834	3e-53

>gi|124487982|gb|ABN12074.1| putative mitochondrial ATP synthase alpha subunit precursor [Maconellicoccus hirsutus]

 Score =  228 bits (580), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 110/120 (91%), Positives = 114/120 (95%)

Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV
Sbjct: 339 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 398

Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT 120
           RGHLDKLDPAKIT FEKEFL H+K+SE+ LL+ I KEGKITE TDAKLKTVVTNFLANFT
Sbjct: 399 RGHLDKLDPAKITAFEKEFLQHVKTSEKALLQDIAKEGKITEATDAKLKTVVTNFLANFT 458

Source: Maconellicoccus hirsutus

Species: Maconellicoccus hirsutus

Genus: Maconellicoccus

Family: Pseudococcidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193666827|ref|XP_001943349.1| PREDICTED: ATP synthase subunit alpha, mitochondrial-like [Acyrthosiphon pisum]

 Score =  220 bits (561), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 105/120 (87%), Positives = 114/120 (95%)

Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAV+YCGV
Sbjct: 431 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVVYCGV 490

Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT 120
           RG LDK++P+KITTFEKEFL HIK+SE+ LLESI KEGKI++DTDAKLKTVV NFLA+F 
Sbjct: 491 RGFLDKMEPSKITTFEKEFLQHIKTSEKSLLESIAKEGKISDDTDAKLKTVVNNFLASFN 550

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|52630965|gb|AAU84946.1| putative mitochondrial ATP synthase alpha subunit precursor [Toxoptera citricida]

 Score =  220 bits (561), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 105/120 (87%), Positives = 115/120 (95%)

Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAV+YCGV
Sbjct: 431 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVVYCGV 490

Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT 120
           RG LDK++P+KITTFEKEFL HIK+SE+ LLESI KEGKIT++TDAKLK+VVTNFLA+F 
Sbjct: 491 RGFLDKMEPSKITTFEKEFLQHIKTSEKSLLESIAKEGKITDETDAKLKSVVTNFLASFN 550

Source: Toxoptera citricida

Species: Toxoptera citricida

Genus: Toxoptera

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242012578|ref|XP_002427008.1| ATP synthase subunit alpha, putative [Pediculus humanus corporis] gi|212511246|gb|EEB14270.1| ATP synthase subunit alpha, putative [Pediculus humanus corporis]

 Score =  215 bits (547), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 101/121 (83%), Positives = 112/121 (92%)

Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV
Sbjct: 432 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 491

Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT 120
           RGHLDKLDP+KIT FEKEFLAH+KSS + LL++I KE KI+E  DAKLK +VT+F+ +F+
Sbjct: 492 RGHLDKLDPSKITAFEKEFLAHVKSSHKDLLDTIAKENKISEAVDAKLKKIVTDFIGSFS 551

Query: 121 G 121
           G
Sbjct: 552 G 552

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195430526|ref|XP_002063305.1| GK21455 [Drosophila willistoni] gi|194159390|gb|EDW74291.1| GK21455 [Drosophila willistoni]

 Score =  214 bits (545), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 101/121 (83%), Positives = 112/121 (92%)

Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPM+IE+QVAVIYCGV
Sbjct: 432 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMSIEDQVAVIYCGV 491

Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT 120
           RGHLDK+DPAKIT FEKEFL HIK++E+GLL++I KEGKI++  DAKLK VVT F+A F 
Sbjct: 492 RGHLDKMDPAKITKFEKEFLQHIKTTEQGLLDTIAKEGKISDAADAKLKDVVTKFMATFQ 551

Query: 121 G 121
           G
Sbjct: 552 G 552

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332374868|gb|AEE62575.1| unknown [Dendroctonus ponderosae]

 Score =  214 bits (545), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 101/121 (83%), Positives = 112/121 (92%)

Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVA+IYCGV
Sbjct: 431 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAIIYCGV 490

Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT 120
           RGHLDK+DP+KIT FEK+F  HIKSS + +L+SI KEGKIT+ TDA+LK VV +FLANF+
Sbjct: 491 RGHLDKVDPSKITVFEKQFSEHIKSSHQSILQSIAKEGKITDSTDAELKKVVQDFLANFS 550

Query: 121 G 121
           G
Sbjct: 551 G 551

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195029787|ref|XP_001987753.1| GH19785 [Drosophila grimshawi] gi|193903753|gb|EDW02620.1| GH19785 [Drosophila grimshawi]

 Score =  214 bits (544), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 101/121 (83%), Positives = 111/121 (91%)

Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIE+QVAVIYCGV
Sbjct: 430 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEDQVAVIYCGV 489

Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT 120
           RGHLDK+DPAKIT FEKEFL HIK+SE+GLL+SI KEG+I+   DAKLK +VT F++ F 
Sbjct: 490 RGHLDKMDPAKITKFEKEFLQHIKTSEQGLLDSIAKEGQISPAVDAKLKDIVTKFMSTFQ 549

Query: 121 G 121
           G
Sbjct: 550 G 550

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312370923|gb|EFR19222.1| hypothetical protein AND_22861 [Anopheles darlingi]

 Score =  214 bits (544), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 97/121 (80%), Positives = 114/121 (94%)

Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV
Sbjct: 431 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 490

Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT 120
           RG+LDK+DP+KIT FE+EFLAH+K++E+ LL+ I  EGKI++D DAKLK++VT+F++ F+
Sbjct: 491 RGYLDKMDPSKITKFEREFLAHVKTNEKALLQQIASEGKISDDADAKLKSIVTSFMSTFS 550

Query: 121 G 121
           G
Sbjct: 551 G 551

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|58385536|ref|XP_314018.2| AGAP005134-PA [Anopheles gambiae str. PEST] gi|55240520|gb|EAA44524.2| AGAP005134-PA [Anopheles gambiae str. PEST]

 Score =  212 bits (539), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 97/120 (80%), Positives = 113/120 (94%)

Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV
Sbjct: 431 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 490

Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT 120
           RG+LDK+DP+KIT FE+EFLAH+K++E+ LL+ I  EGKI++D DAKLK+VVT+F++ F+
Sbjct: 491 RGYLDKMDPSKITKFEREFLAHVKTNEKALLQQIASEGKISDDADAKLKSVVTSFMSTFS 550

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289742845|gb|ADD20170.1| F0F1-type ATP synthase alpha subunit [Glossina morsitans morsitans]

 Score =  211 bits (538), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 101/121 (83%), Positives = 109/121 (90%)

Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPM+IE+QVAVIYCGV
Sbjct: 432 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMSIEDQVAVIYCGV 491

Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT 120
           RGHLDK+DPAKIT FEKEFL HIK+SE+ LL  I +EGKI+E  DAKLK VVT FL+ F 
Sbjct: 492 RGHLDKMDPAKITKFEKEFLQHIKTSEQSLLSQIAQEGKISEGADAKLKEVVTKFLSTFQ 551

Query: 121 G 121
           G
Sbjct: 552 G 552

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
FB|FBgn0011211	552	blw "bellwether" [Drosophila m	1.0	0.219	0.809	4.7e-48
UNIPROTKB|F1NGA2	555	ATP5A1W "ATP synthase subunit	0.983	0.214	0.798	6.2e-46
UNIPROTKB|F1NI22	553	ATP5A1W "ATP synthase subunit	0.983	0.215	0.798	6.2e-46
WB|WBGene00010419	538	H28O16.1d.6 [Caenorhabditis el	0.983	0.221	0.773	7.1e-45
UNIPROTKB|F1RPS8	533	ATP5A1 "ATP synthase subunit a	0.983	0.223	0.781	1.5e-44
UNIPROTKB|P19483	553	ATP5A1 "ATP synthase subunit a	0.983	0.215	0.773	3.9e-44
ZFIN|ZDB-GENE-060201-1	551	atp5a1 "ATP synthase, H+ trans	0.983	0.215	0.773	3.9e-44
UNIPROTKB|E2RNG2	553	ATP5A1 "ATP synthase subunit a	0.983	0.215	0.781	5e-44
RGD|619993	553	Atp5a1 "ATP synthase, H+ trans	0.983	0.215	0.773	5e-44
UNIPROTKB|P15999	553	Atp5a1 "ATP synthase subunit a	0.983	0.215	0.773	5e-44

FB|FBgn0011211 blw "bellwether" [Drosophila melanogaster (taxid:7227)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 98/121 (80%), Positives = 110/121 (90%)

Query:     1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
             MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIE+QVAVIYCGV
Sbjct:   432 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEDQVAVIYCGV 491

Query:    61 RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT 120
             RGHLDK+DPAKIT FEKEFL HIK+SE+ LL++I K+G I+E +DAKLK +V  F++ F 
Sbjct:   492 RGHLDKMDPAKITKFEKEFLQHIKTSEQALLDTIAKDGAISEASDAKLKDIVAKFMSTFQ 551

Query:   121 G 121
             G
Sbjct:   552 G 552

GO:0007286 "spermatid development" evidence=IMP

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=ISS;NAS

GO:0040007 "growth" evidence=IMP

GO:0015992 "proton transport" evidence=ISS;NAS

GO:0000275 "mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)" evidence=ISS

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0005811 "lipid particle" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

UNIPROTKB|F1NGA2 ATP5A1W "ATP synthase subunit alpha" [Gallus gallus (taxid:9031)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 95/119 (79%), Positives = 106/119 (89%)

Query:     1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
             MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIY GV
Sbjct:   435 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYAGV 494

Query:    61 RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
             RGHLDKL+P+KIT FE  FLAH+ S  + LL +I+ EGKI++ T+AKLK +VTNFL+ F
Sbjct:   495 RGHLDKLEPSKITKFESAFLAHVLSQHQALLSTIRTEGKISDQTEAKLKEIVTNFLSTF 553

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

UNIPROTKB|F1NI22 ATP5A1W "ATP synthase subunit alpha" [Gallus gallus (taxid:9031)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 95/119 (79%), Positives = 106/119 (89%)

Query:     1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
             MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIY GV
Sbjct:   433 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYAGV 492

Query:    61 RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
             RGHLDKL+P+KIT FE  FLAH+ S  + LL +I+ EGKI++ T+AKLK +VTNFL+ F
Sbjct:   493 RGHLDKLEPSKITKFESAFLAHVLSQHQALLSTIRTEGKISDQTEAKLKEIVTNFLSTF 551

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

WB|WBGene00010419 H28O16.1d.6 [Caenorhabditis elegans (taxid:6239)]

 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 92/119 (77%), Positives = 108/119 (90%)

Query:     1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
             MKLELAQYREVAAFAQFGSDLDA+TQQLLNRGVRLTELLKQGQYVPM IEEQV VIY GV
Sbjct:   418 MKLELAQYREVAAFAQFGSDLDASTQQLLNRGVRLTELLKQGQYVPMGIEEQVGVIYAGV 477

Query:    61 RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
             +G+LDK+DP+ IT FEKEFLAH++SS++ LL++I++EG+I+  TDA+LK VV NFLA F
Sbjct:   478 KGYLDKVDPSAITKFEKEFLAHLRSSQQALLKTIREEGQISPQTDAQLKDVVVNFLATF 536

GO:0005524 "ATP binding" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|F1RPS8 ATP5A1 "ATP synthase subunit alpha" [Sus scrofa (taxid:9823)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 93/119 (78%), Positives = 105/119 (88%)

Query:     1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
             MKLELAQYREVAAFAQFGSDLDAATQQLL+RGVRLTELLKQGQY PMAIEEQVAVIY GV
Sbjct:   413 MKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYAPMAIEEQVAVIYAGV 472

Query:    61 RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
             RG+LDKL+P+KIT FE  FL+H+ S  + LL  I+ +GKI+E+TDAKLK +VTNFLA F
Sbjct:   473 RGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRADGKISEETDAKLKEIVTNFLAGF 531

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0043499 "eukaryotic cell surface binding" evidence=IEA

GO:0042288 "MHC class I protein binding" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0001937 "negative regulation of endothelial cell proliferation" evidence=IEA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

UNIPROTKB|P19483 ATP5A1 "ATP synthase subunit alpha, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 92/119 (77%), Positives = 105/119 (88%)

Query:     1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
             MKLELAQYREVAAFAQFGSDLDAATQQLL+RGVRLTELLKQGQY PMAIEEQVAVIY GV
Sbjct:   433 MKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGV 492

Query:    61 RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
             RG+LDKL+P+KIT FE  FL+H+ S  + LL  I+ +GKI+E++DAKLK +VTNFLA F
Sbjct:   493 RGYLDKLEPSKITKFENAFLSHVISQHQALLSKIRTDGKISEESDAKLKEIVTNFLAGF 551

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IEA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

ZFIN|ZDB-GENE-060201-1 atp5a1 "ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle" [Danio rerio (taxid:7955)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 92/119 (77%), Positives = 105/119 (88%)

Query:     1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
             MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQY PMAIEEQVAVIY GV
Sbjct:   432 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYSPMAIEEQVAVIYAGV 491

Query:    61 RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
             RGHLDK++P+KIT FEK FL H+ S  + LL +I+ +GKI+E +DAKLK +V NFL++F
Sbjct:   492 RGHLDKMEPSKITKFEKAFLQHVISQHQDLLAAIRSDGKISEASDAKLKEIVLNFLSSF 550

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006754 "ATP biosynthetic process" evidence=IEA

UNIPROTKB|E2RNG2 ATP5A1 "ATP synthase subunit alpha" [Canis lupus familiaris (taxid:9615)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 93/119 (78%), Positives = 105/119 (88%)

Query:     1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
             MKLELAQYREVAAFAQFGSDLDAATQQLL+RGVRLTELLKQGQY PMAIEEQVAVIY GV
Sbjct:   433 MKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGV 492

Query:    61 RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
             RG+LDKL+P+KIT FE  FLAH+ S  + LL +I+ +GKI+E +DAKLK +VTNFLA F
Sbjct:   493 RGYLDKLEPSKITKFEHAFLAHVISQHQALLGNIRTDGKISEQSDAKLKEIVTNFLAGF 551

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0043499 "eukaryotic cell surface binding" evidence=IEA

GO:0042288 "MHC class I protein binding" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0001937 "negative regulation of endothelial cell proliferation" evidence=IEA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

RGD|619993 Atp5a1 "ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle" [Rattus norvegicus (taxid:10116)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 92/119 (77%), Positives = 105/119 (88%)

Query:     1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
             MKLELAQYREVAAFAQFGSDLDAATQQLL+RGVRLTELLKQGQY PMAIEEQVAVIY GV
Sbjct:   433 MKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGV 492

Query:    61 RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
             RG+LDKL+P+KIT FE  FL+H+ S  + LL +I+ +GKI+E +DAKLK +VTNFLA F
Sbjct:   493 RGYLDKLEPSKITKFESAFLSHVVSQHQSLLGNIRSDGKISEQSDAKLKEIVTNFLAGF 551

GO:0000275 "mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IDA

GO:0001937 "negative regulation of endothelial cell proliferation" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA;ISO;IDA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO;IDA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISO;IDA

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0006172 "ADP biosynthetic process" evidence=IDA

GO:0006200 "ATP catabolic process" evidence=ISO;IDA

GO:0006629 "lipid metabolic process" evidence=IEA;ISO

GO:0009790 "embryo development" evidence=IEA;ISO

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015992 "proton transport" evidence=ISO

GO:0016887 "ATPase activity" evidence=ISO;IMP

GO:0034220 "ion transmembrane transport" evidence=ISO

GO:0042288 "MHC class I protein binding" evidence=ISO

GO:0043499 "eukaryotic cell surface binding" evidence=ISO

GO:0043531 "ADP binding" evidence=IDA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA;IDA

GO:0046034 "ATP metabolic process" evidence=IDA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA;ISO

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0008180 "signalosome" evidence=ISO

UNIPROTKB|P15999 Atp5a1 "ATP synthase subunit alpha, mitochondrial" [Rattus norvegicus (taxid:10116)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 92/119 (77%), Positives = 105/119 (88%)

Query:     1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
             MKLELAQYREVAAFAQFGSDLDAATQQLL+RGVRLTELLKQGQY PMAIEEQVAVIY GV
Sbjct:   433 MKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGV 492

Query:    61 RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
             RG+LDKL+P+KIT FE  FL+H+ S  + LL +I+ +GKI+E +DAKLK +VTNFLA F
Sbjct:   493 RGYLDKLEPSKITKFESAFLSHVVSQHQSLLGNIRSDGKISEQSDAKLKEIVTNFLAGF 551

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A9WWS4	ATPA_BRUSI	3, ., 6, ., 3, ., 1, 4	0.575	0.9917	0.2357	yes	N/A
A5V3X3	ATPA_SPHWW	3, ., 6, ., 3, ., 1, 4	0.5378	0.9834	0.2337	yes	N/A
Q8UC74	ATPA_AGRT5	3, ., 6, ., 3, ., 1, 4	0.5666	0.9917	0.2357	yes	N/A
Q0BQE6	ATPA_GRABC	3, ., 6, ., 3, ., 1, 4	0.5083	0.9917	0.2348	yes	N/A
A7HT50	ATPA_PARL1	3, ., 6, ., 3, ., 1, 4	0.6166	0.9917	0.2357	yes	N/A
P07251	ATPA_YEAST	No assigned EC number	0.5546	0.9834	0.2183	yes	N/A
C3M9S3	ATPA_RHISN	3, ., 6, ., 3, ., 1, 4	0.5798	0.9834	0.2337	yes	N/A
P25705	ATPA_HUMAN	No assigned EC number	0.7731	0.9834	0.2151	yes	N/A
Q2YLI5	ATPA_BRUA2	3, ., 6, ., 3, ., 1, 4	0.575	0.9917	0.2357	yes	N/A
A8LJR6	ATPA2_DINSH	3, ., 6, ., 3, ., 1, 4	0.55	0.9834	0.2324	yes	N/A
Q89X72	ATPA_BRAJA	3, ., 6, ., 3, ., 1, 4	0.5462	0.9834	0.2337	yes	N/A
Q2J3I2	ATPA_RHOP2	3, ., 6, ., 3, ., 1, 4	0.5714	0.9834	0.2333	yes	N/A
Q4FP36	ATPA_PELUB	3, ., 6, ., 3, ., 1, 4	0.5416	0.9917	0.2348	yes	N/A
Q2K3G8	ATPA_RHIEC	3, ., 6, ., 3, ., 1, 4	0.5630	0.9834	0.2337	yes	N/A
Q0C0Z8	ATPA_HYPNA	3, ., 6, ., 3, ., 1, 4	0.5294	0.9834	0.2328	yes	N/A
P35381	ATPA_DROME	No assigned EC number	0.8099	1.0	0.2192	yes	N/A
Q13DP4	ATPA_RHOPS	3, ., 6, ., 3, ., 1, 4	0.5546	0.9834	0.2333	yes	N/A
Q0AKV8	ATPA_MARMM	3, ., 6, ., 3, ., 1, 4	0.5714	0.9834	0.2333	yes	N/A
B1LVH1	ATPA_METRJ	3, ., 6, ., 3, ., 1, 4	0.5892	0.9256	0.2196	yes	N/A
Q92LK6	ATPA_RHIME	3, ., 6, ., 3, ., 1, 4	0.5666	0.9917	0.2357	yes	N/A
B2S7M5	ATPA_BRUA1	3, ., 6, ., 3, ., 1, 4	0.575	0.9917	0.2357	yes	N/A
A6UDM3	ATPA_SINMW	3, ., 6, ., 3, ., 1, 4	0.575	0.9917	0.2357	yes	N/A
A9M839	ATPA_BRUC2	3, ., 6, ., 3, ., 1, 4	0.575	0.9917	0.2357	yes	N/A
Q11DD7	ATPA_MESSB	3, ., 6, ., 3, ., 1, 4	0.5416	0.9917	0.2357	yes	N/A
Q6NDD0	ATPA_RHOPA	3, ., 6, ., 3, ., 1, 4	0.5714	0.9834	0.2333	yes	N/A
P15999	ATPA_RAT	No assigned EC number	0.7731	0.9834	0.2151	yes	N/A
B0UE41	ATPA_METS4	3, ., 6, ., 3, ., 1, 4	0.5583	0.9917	0.2357	yes	N/A
A5A6H5	ATPA_PANTR	No assigned EC number	0.7731	0.9834	0.2151	yes	N/A
Q57B86	ATPA_BRUAB	3, ., 6, ., 3, ., 1, 4	0.575	0.9917	0.2357	yes	N/A
Q8YJ37	ATPA_BRUME	3, ., 6, ., 3, ., 1, 4	0.575	0.9917	0.2357	yes	N/A
A5VSE3	ATPA_BRUO2	3, ., 6, ., 3, ., 1, 4	0.575	0.9917	0.2357	yes	N/A
Q03265	ATPA_MOUSE	No assigned EC number	0.7731	0.9834	0.2151	yes	N/A
P19483	ATPA_BOVIN	No assigned EC number	0.7731	0.9834	0.2151	yes	N/A
Q1MAZ0	ATPA_RHIL3	3, ., 6, ., 3, ., 1, 4	0.5666	0.9917	0.2357	yes	N/A
A6WXW9	ATPA_OCHA4	3, ., 6, ., 3, ., 1, 4	0.5333	0.9917	0.2357	yes	N/A
C0RF52	ATPA_BRUMB	3, ., 6, ., 3, ., 1, 4	0.575	0.9917	0.2357	yes	N/A
Q98EV6	ATPA_RHILO	3, ., 6, ., 3, ., 1, 4	0.5583	0.9917	0.2357	yes	N/A
P49375	ATPA_KLULA	No assigned EC number	0.5378	0.9834	0.2171	yes	N/A
P24487	ATPA_SCHPO	No assigned EC number	0.5546	0.9834	0.2220	yes	N/A
B9JTR4	ATPA_AGRVS	3, ., 6, ., 3, ., 1, 4	0.5333	0.9917	0.2362	yes	N/A
Q5R546	ATPA_PONAB	No assigned EC number	0.7731	0.9834	0.2151	yes	N/A
Q8FYR3	ATPA_BRUSU	3, ., 6, ., 3, ., 1, 4	0.5666	0.9917	0.2357	yes	N/A
B3PQ70	ATPA_RHIE6	3, ., 6, ., 3, ., 1, 4	0.5546	0.9834	0.2337	yes	N/A
B8IN03	ATPA_METNO	3, ., 6, ., 3, ., 1, 4	0.5630	0.9834	0.2337	yes	N/A
B0T338	ATPA_CAUSK	3, ., 6, ., 3, ., 1, 4	0.5546	0.9834	0.2333	yes	N/A
B5ZSN9	ATPA_RHILW	3, ., 6, ., 3, ., 1, 4	0.5666	0.9917	0.2357	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	121
PRK09281	502	PRK09281, PRK09281, F0F1 ATP synthase subunit alph	2e-57
COG0056	504	COG0056, AtpA, F0F1-type ATP synthase, alpha subun	1e-44
TIGR00962	501	TIGR00962, atpA, proton translocating ATP synthase	8e-43
CHL00059	485	CHL00059, atpA, ATP synthase CF1 alpha subunit	3e-36
PRK13343	502	PRK13343, PRK13343, F0F1 ATP synthase subunit alph	3e-33
pfam00306	110	pfam00306, ATP-synt_ab_C, ATP synthase alpha/beta	2e-21
TIGR03324	497	TIGR03324, alt_F1F0_F1_al, alternate F1F0 ATPase,	2e-15

>gnl|CDD|236448 PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated

 Score =  184 bits (470), Expect = 2e-57
 Identities = 58/121 (47%), Positives = 82/121 (67%)

Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           ++L+LAQYRE+ AFAQFGSDLD AT+  L RG RL ELLKQ QY P+ +EEQV ++Y G 
Sbjct: 382 LRLDLAQYRELEAFAQFGSDLDEATRAQLERGQRLVELLKQPQYSPLPVEEQVVILYAGT 441

Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT 120
            G+LD +   K+  FE E LA+++S+   LLE I++   ++++ +AKLK  +  F   F 
Sbjct: 442 NGYLDDVPVEKVRRFEAELLAYLRSNHADLLEEIRETKDLSDEIEAKLKAAIEEFKKTFA 501

Query: 121 G 121
            
Sbjct: 502 A 502

Length = 502

>gnl|CDD|223134 COG0056, AtpA, F0F1-type ATP synthase, alpha subunit [Energy production and conversion]

 Score =  150 bits (382), Expect = 1e-44
 Identities = 59/119 (49%), Positives = 83/119 (69%)

Query: 2   KLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVR 61
           +L LAQYRE+ AF+QFGSDLD AT++ L RG RLTELLKQ QY P+++EEQV ++Y G  
Sbjct: 383 RLILAQYRELEAFSQFGSDLDKATRKQLERGKRLTELLKQPQYSPLSVEEQVLILYAGTN 442

Query: 62  GHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT 120
           G+LD +   K+  FEKE LA+++S  + LLE I+   ++ ++ +AKLK  +  F   F 
Sbjct: 443 GYLDDVPVEKVADFEKELLAYLRSDHKELLEEIRTTKELDDEIEAKLKAAIKEFKKTFA 501

Length = 504

>gnl|CDD|233211 TIGR00962, atpA, proton translocating ATP synthase, F1 alpha subunit

 Score =  145 bits (369), Expect = 8e-43
 Identities = 57/119 (47%), Positives = 83/119 (69%)

Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           ++LELAQYRE+ AF+QF SDLD AT++ L RG R+ ELLKQ QY P+++EEQV +++ G 
Sbjct: 381 LRLELAQYRELEAFSQFASDLDEATKKQLERGQRVVELLKQPQYKPLSVEEQVVILFAGT 440

Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
           +G+LD +   KI  FE+  LA++ ++   +LE I    K+TE+ +AKLK  + NF   F
Sbjct: 441 KGYLDDIPVDKIRKFEQALLAYLDANHPDILEEINTTKKLTEELEAKLKEALKNFKKTF 499

The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit [Energy metabolism, ATP-proton motive force interconversion]. Length = 501

>gnl|CDD|176999 CHL00059, atpA, ATP synthase CF1 alpha subunit

 Score =  128 bits (323), Expect = 3e-36
 Identities = 55/119 (46%), Positives = 72/119 (60%)

Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           +KLELAQ+ E+ AFAQF SDLD ATQ  L RG RL ELLKQ Q  P+ +EEQVA IY G 
Sbjct: 361 LKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQVATIYTGT 420

Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
            G+LD L+  ++  F  E   ++K+++    E I      TE+ +A LK  +   L  F
Sbjct: 421 NGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAEALLKEAIQEQLELF 479

Length = 485

>gnl|CDD|183987 PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional

 Score =  120 bits (303), Expect = 3e-33
 Identities = 41/120 (34%), Positives = 69/120 (57%)

Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           ++L+ AQ+ E+ AF +FG  LDA TQ+ + RG RL ELLKQ ++ P+++EEQ+A++Y   
Sbjct: 382 LRLDYAQFLELEAFTRFGGLLDAGTQKQITRGRRLRELLKQPRFSPLSVEEQIALLYALN 441

Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT 120
            G LD +  A I  FE+  L  + +    L  +++   ++ E   A L+ ++      F 
Sbjct: 442 EGLLDAVPLANIQAFEERLLEKLDARFAALSLALESPRELDEAWLAALEEILREAGERFA 501

Length = 502

>gnl|CDD|215848 pfam00306, ATP-synt_ab_C, ATP synthase alpha/beta chain, C terminal domain

 Score = 81.9 bits (203), Expect = 2e-21
 Identities = 39/108 (36%), Positives = 48/108 (44%), Gaps = 13/108 (12%)

Query: 1   MKLELAQYREVAAFAQ-FGSD-LDAATQQLLNRGVRLTELLKQGQYVPM-------AIEE 51
           +KLELAQYRE+ A  Q  G D L    +  L R  R+ E LKQ QY P         +EE
Sbjct: 7   LKLELAQYRELQAIVQLVGEDALSEEDKLTLERARRIEEFLKQNQYSPEPVEKQYVPVEE 66

Query: 52  QVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGK 99
            + + Y  +RG  D L    +       LA  K     L E  KK  K
Sbjct: 67  TIDLFYALLRGKFDDLPEDALYRIGTIDLAKYKD----LEEKFKKLKK 110

Length = 110

>gnl|CDD|132367 TIGR03324, alt_F1F0_F1_al, alternate F1F0 ATPase, F1 subunit alpha

 Score = 70.2 bits (172), Expect = 2e-15
 Identities = 30/103 (29%), Positives = 54/103 (52%)

Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           +KL  AQ+ E+  FA+FG+ LD  T++ +  G R+   LKQ Q  P+ + +Q+A++    
Sbjct: 382 LKLAYAQFEELETFARFGARLDENTRKTIEHGRRIRACLKQTQSSPLTVPQQIAILLALT 441

Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITED 103
            G  D +D   +   E    A + S    L E ++   K++++
Sbjct: 442 NGLFDGVDLDAMPEAESAIRAAVTSLPADLRERLQSGKKLSDE 484

A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase. Length = 497

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	121
COG0056	504	AtpA F0F1-type ATP synthase, alpha subunit [Energy	100.0
PRK13343	502	F0F1 ATP synthase subunit alpha; Provisional	99.96
CHL00059	485	atpA ATP synthase CF1 alpha subunit	99.95
TIGR00962	501	atpA proton translocating ATP synthase, F1 alpha s	99.95
TIGR03324	497	alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit a	99.93
PRK09281	502	F0F1 ATP synthase subunit alpha; Validated	99.93
KOG1353|consensus	340		99.91
PTZ00185	574	ATPase alpha subunit; Provisional	99.91
PRK07165	507	F0F1 ATP synthase subunit alpha; Validated	99.89
PF00306	113	ATP-synt_ab_C: ATP synthase alpha/beta chain, C te	99.85
PRK04196	460	V-type ATP synthase subunit B; Provisional	98.89
TIGR01041	458	ATP_syn_B_arch ATP synthase archaeal, B subunit. A	98.73
TIGR01043	578	ATP_syn_A_arch ATP synthase archaeal, A subunit. A	98.44
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	98.43
PRK06315	442	type III secretion system ATPase; Provisional	98.34
PRK09099	441	type III secretion system ATPase; Provisional	98.29
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	98.27
PRK06936	439	type III secretion system ATPase; Provisional	98.23
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.18
PRK07594	433	type III secretion system ATPase SsaN; Validated	98.15
PRK08149	428	ATP synthase SpaL; Validated	98.1
CHL00060	494	atpB ATP synthase CF1 beta subunit	98.09
PRK12597	461	F0F1 ATP synthase subunit beta; Provisional	98.09
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	98.09
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.08
PRK05688	451	fliI flagellum-specific ATP synthase; Validated	98.06
TIGR03305	449	alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit	98.06
PRK08472	434	fliI flagellum-specific ATP synthase; Validated	98.05
TIGR03496	411	FliI_clade1 flagellar protein export ATPase FliI.	98.02
PRK08972	444	fliI flagellum-specific ATP synthase; Validated	98.0
PRK06820	440	type III secretion system ATPase; Validated	97.95
PRK14698	1017	V-type ATP synthase subunit A; Provisional	97.93
TIGR01039	461	atpD ATP synthase, F1 beta subunit. The sequences	97.93
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	97.89
TIGR03497	413	FliI_clade2 flagellar protein export ATPase FliI.	97.84
PRK08927	442	fliI flagellum-specific ATP synthase; Validated	97.78
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	97.74
PRK09280	463	F0F1 ATP synthase subunit beta; Validated	97.62
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	97.6
PRK04192	586	V-type ATP synthase subunit A; Provisional	96.73
PRK02118	436	V-type ATP synthase subunit B; Provisional	96.7
PRK05922	434	type III secretion system ATPase; Validated	96.49
PF09494	64	Slx4: Slx4 endonuclease; InterPro: IPR018574 The S	83.51

>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]

Probab=100.00  E-value=9e-39  Score=266.39  Aligned_cols=121  Identities=49%  Similarity=0.798  Sum_probs=119.2

Q ss_pred             ChhhhhhhHHHHHHHhhcCCccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHH
Q psy13777          1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFL   80 (121)
Q Consensus         1 LkL~LAQyrELeaFaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~   80 (121)
                      ||++|||||||++|||||||||++|+++|+||+|++|+||||+|+|+|+++||++|||+++||||+||+++|..|+..++
T Consensus       382 lrl~laqYrel~afsqf~sdLd~~T~~~l~~G~r~~ellkQ~~~~p~sv~~qv~ilya~~~G~ld~v~v~~v~~fe~~l~  461 (504)
T COG0056         382 LRLILAQYRELEAFSQFGSDLDKATRKQLERGKRLTELLKQPQYSPLSVEEQVLILYAGTNGYLDDVPVEKVADFEKELL  461 (504)
T ss_pred             HHHHHHHHHHHHHHHhhcchhCHHHHHHHHccHHHHHHhcCCCCCCccHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhchhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhccC
Q psy13777         81 AHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFTG  121 (121)
Q Consensus        81 ~~l~~~~~~~~~~i~~~~~l~~~~~~~l~~~~~~~~~~f~~  121 (121)
                      .|++.+|+++++.|++++.+++++++.++.++++|++.|.|
T Consensus       462 ~~~~~~~~~~~~~I~~~~~l~~~~e~~l~~~i~~f~~~f~~  502 (504)
T COG0056         462 AYLRSDHKELLEEIRTTKELDDEIEAKLKAAIKEFKKTFAL  502 (504)
T ss_pred             HHHHhhHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999875

>PRK13343 F0F1 ATP synthase subunit alpha; Provisional

Probab=99.96  E-value=2.3e-28  Score=207.47  Aligned_cols=121  Identities=34%  Similarity=0.548  Sum_probs=118.7

Q ss_pred             ChhhhhhhHHHHHHHhhcCCccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHH
Q psy13777          1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFL   80 (121)
Q Consensus         1 LkL~LAQyrELeaFaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~   80 (121)
                      +|++||||+|++.|++||+++|+.|+++++||++|+++|||++++|++.++|++.||++++|++|++|+++|+.|+..++
T Consensus       382 lr~~la~y~e~e~~~~~G~~ld~~~~~~i~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~i~~~~~~~~  461 (502)
T PRK13343        382 LRLDYAQFLELEAFTRFGGLLDAGTQKQITRGRRLRELLKQPRFSPLSVEEQIALLYALNEGLLDAVPLANIQAFEERLL  461 (502)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhchhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhccC
Q psy13777         81 AHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFTG  121 (121)
Q Consensus        81 ~~l~~~~~~~~~~i~~~~~l~~~~~~~l~~~~~~~~~~f~~  121 (121)
                      +|+++++|++++.|..++.|+++.++.|++++++|.+.|.|
T Consensus       462 ~~~~~~~~~~~~~i~~~~~l~~~~~~~l~~~~~~~~~~~~~  502 (502)
T PRK13343        462 EKLDARFAALSLALESPRELDEAWLAALEEILREAGERFAA  502 (502)
T ss_pred             HHHHhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhCC
Confidence            99999999999999999999999999999999999998875

>CHL00059 atpA ATP synthase CF1 alpha subunit

Probab=99.95  E-value=1.1e-27  Score=202.52  Aligned_cols=119  Identities=46%  Similarity=0.658  Sum_probs=116.7

Q ss_pred             ChhhhhhhHHHHHHHhhcCCccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHH
Q psy13777          1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFL   80 (121)
Q Consensus         1 LkL~LAQyrELeaFaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~   80 (121)
                      +|++||||+|++.|++|++++|+.|+.+++||++|+++|||++++|+++++|+++|||+++|+||++|+++|..|+..++
T Consensus       361 lr~~la~y~e~e~~~~~~~~~d~~~~~~i~~~~~i~~~L~Q~~~~~~~~~e~~~~l~a~~~g~l~~~~~~~v~~~~~~l~  440 (485)
T CHL00059        361 LKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQVATIYTGTNGYLDSLEIGQVRKFLVELR  440 (485)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHhcCCCCCCCCHHHHHHHHHHhccCCcCccCHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhchhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc
Q psy13777         81 AHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF  119 (121)
Q Consensus        81 ~~l~~~~~~~~~~i~~~~~l~~~~~~~l~~~~~~~~~~f  119 (121)
                      +|+++++|++++.|..++.++++.++.|++++++|.+.|
T Consensus       441 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~  479 (485)
T CHL00059        441 TYLKTNKPQFQEIISSTKTFTEEAEALLKEAIQEQLELF  479 (485)
T ss_pred             HHHHhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998876

>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit

Probab=99.95  E-value=6e-27  Score=198.90  Aligned_cols=121  Identities=47%  Similarity=0.783  Sum_probs=119.1

Q ss_pred             ChhhhhhhHHHHHHHhhcCCccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHH
Q psy13777          1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFL   80 (121)
Q Consensus         1 LkL~LAQyrELeaFaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~   80 (121)
                      +|..||||+|++.|++||+++|+.++..+++|++|+++|+|++++|+++++|+++|||+++||||++|+++|..|+..+.
T Consensus       381 lr~~la~y~e~~~l~~~g~~ld~~~~~~l~~~~~i~~fL~Q~~~~~~~~~~q~~~l~a~~~G~l~~v~~~~i~~~~~~l~  460 (501)
T TIGR00962       381 LRLELAQYRELEAFSQFASDLDEATKAQLERGKRLVELLKQPQYKPLPVEEQVVILYAGTKGYLDDIPVDKVRKFEQELL  460 (501)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhcCCcccccHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhchhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhccC
Q psy13777         81 AHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFTG  121 (121)
Q Consensus        81 ~~l~~~~~~~~~~i~~~~~l~~~~~~~l~~~~~~~~~~f~~  121 (121)
                      +|+++++|++++.|+.++.++++.++.|++++++|.+.|.|
T Consensus       461 ~~l~~~~~~~~~~i~~~~~l~~~~~~~L~~~i~~~~~~f~~  501 (501)
T TIGR00962       461 DYLDANHPDILEEINTKKKLTEELEDKLKEALKNFKKTFAA  501 (501)
T ss_pred             HHHHHhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999999999999999999988

The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.

>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha

Probab=99.93  E-value=1.6e-25  Score=189.78  Aligned_cols=114  Identities=26%  Similarity=0.468  Sum_probs=111.0

Q ss_pred             ChhhhhhhHHHHHHHhhcCCccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHH
Q psy13777          1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFL   80 (121)
Q Consensus         1 LkL~LAQyrELeaFaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~   80 (121)
                      +|+.||||+|++.|++||+++|+.|++.+++|++|+++|||++++|+++++|++.|+++++|++|++|+++|..|+..++
T Consensus       382 lr~~la~y~e~e~~~~~G~~ld~~~~~~i~~~~~i~~fL~Q~~~~~~~~~~~~~~l~~~~~g~~d~~~~~~v~~~~~~~~  461 (497)
T TIGR03324       382 LKLAYAQFEELETFARFGARLDENTRKTIEHGRRIRACLKQTQSSPLTVPQQIAILLALTNGLFDGVDLDAMPEAESAIR  461 (497)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcCHHHHHHHHhHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhchhHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy13777         81 AHIKSSERGLLESIKKEGKITEDTDAKLKTVVTN  114 (121)
Q Consensus        81 ~~l~~~~~~~~~~i~~~~~l~~~~~~~l~~~~~~  114 (121)
                      .|++++||++++.|..++.++++.++.+++++++
T Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (497)
T TIGR03324       462 AAVTSLPADLRERLQSGKKLSDEDREQILDIARG  495 (497)
T ss_pred             HHHHhhhHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence            9999999999999999999999999999888875

A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.

>PRK09281 F0F1 ATP synthase subunit alpha; Validated

Probab=99.93  E-value=7.3e-25  Score=186.23  Aligned_cols=120  Identities=48%  Similarity=0.813  Sum_probs=117.3

Q ss_pred             ChhhhhhhHHHHHHHhhcCCccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHH
Q psy13777          1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFL   80 (121)
Q Consensus         1 LkL~LAQyrELeaFaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~   80 (121)
                      +|..||||+|++.|++||+++|+.++..+++|++|+++|+|+.++|++.++|++++|++++|+||++|.+++..|+..++
T Consensus       382 lr~~la~y~e~~~l~~~g~~l~~~~~~~l~~~~~i~~fL~Q~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~i~~~~~~~~  461 (502)
T PRK09281        382 LRLDLAQYRELEAFAQFGSDLDEATRAQLERGQRLVELLKQPQYSPLPVEEQVVILYAGTNGYLDDVPVEKVRRFEAELL  461 (502)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCccccCCHHHHHHHHHHHH
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhchhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcc
Q psy13777         81 AHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT  120 (121)
Q Consensus        81 ~~l~~~~~~~~~~i~~~~~l~~~~~~~l~~~~~~~~~~f~  120 (121)
                      +|+++++|++++.|..++.++++.++.|++++++|.+.|.
T Consensus       462 ~~l~~~~~~~~~~I~~~~~l~~~~~~~L~~~i~~~~~~f~  501 (502)
T PRK09281        462 AYLRSNHADLLEEIRETKDLSDEIEAKLKAAIEEFKKTFA  501 (502)
T ss_pred             HHHHHhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999998774

>KOG1353|consensus

Probab=99.91  E-value=9.1e-26  Score=178.82  Aligned_cols=59  Identities=93%  Similarity=1.287  Sum_probs=57.6

Q ss_pred             ChhhhhhhHHHHHHHhhcCCccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q psy13777          1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCG   59 (121)
Q Consensus         1 LkL~LAQyrELeaFaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~   59 (121)
                      |||+||||||+++|||||||||++|++.|.||.|++|+|||+||.||.+++||+++||+
T Consensus       282 ~klelaq~revaafaqfgsdlda~tq~~l~rg~rltellkq~qy~p~~~e~qv~~iy~g  340 (340)
T KOG1353|consen  282 LKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYAPLAIEEQVAVIYAG  340 (340)
T ss_pred             hhhHHHHHHHHHHHHHhcccccHHHHHHHHhhhHHHHHHhcCCCCCcchhhheeeEecC
Confidence            69999999999999999999999999999999999999999999999999999999984

>PTZ00185 ATPase alpha subunit; Provisional

Probab=99.91  E-value=7.6e-25  Score=186.70  Aligned_cols=76  Identities=26%  Similarity=0.380  Sum_probs=73.1

Q ss_pred             ChhhhhhhHHHHHHHhhcCCccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHH
Q psy13777          1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFL   80 (121)
Q Consensus         1 LkL~LAQyrELeaFaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~   80 (121)
                      +|++||||+||++|||||||||+   ++|+||+|++|+|||++  |+++++||++|||+++||||++|+++|..+|..+.
T Consensus       417 lr~~LaqY~El~~fa~fgsdld~---~~l~rG~r~~ellkQ~~--p~~~~~qv~~l~a~~~g~ld~~~~~~i~~~~~~~~  491 (574)
T PTZ00185        417 LKGILAEYRKLAADSVGGSQVQT---VPMIRGARFVALFNQKN--PSFFMNALVSLYACLNGYLDDVKVNYAKLYEYLLV  491 (574)
T ss_pred             HHHHHHHHHHHHHHHhhcchhhH---HHHHhhHHHHHHHCCCC--CCCHHHHHHHHHHHhcCCcccCcHHHHHHHHHhcc
Confidence            58999999999999999999999   89999999999999999  99999999999999999999999999999998765


Q ss_pred             H
Q psy13777         81 A   81 (121)
Q Consensus        81 ~   81 (121)
                      +
T Consensus       492 ~  492 (574)
T PTZ00185        492 N  492 (574)
T ss_pred             C
Confidence            4

>PRK07165 F0F1 ATP synthase subunit alpha; Validated

Probab=99.89  E-value=1.4e-22  Score=172.23  Aligned_cols=116  Identities=12%  Similarity=0.222  Sum_probs=107.7

Q ss_pred             ChhhhhhhHHHHHHHhhcCCccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhCCCCCCCh-hHHHHHHHHH
Q psy13777          1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDP-AKITTFEKEF   79 (121)
Q Consensus         1 LkL~LAQyrELeaFaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~~~g~ld~i~~-~~v~~f~~~l   79 (121)
                      +|..||||+|++.|++||++||+.|++.|++|+++.++|||++|+|+++.+|+++++++++|+|+++|+ ++|..|+..+
T Consensus       358 ~r~~la~Y~e~e~~~~~~~~ld~~~~~~l~~g~~i~~~L~Q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  437 (507)
T PRK07165        358 ISKIYRAYKRQLKLSMLDYDLNKETSDLLFKGKMIEKMFNQKGFSLYSYRFVLLISKLISWGLLKDVKDEQKALDFIDYL  437 (507)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhhhhhhCCcHHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999999999999999999999999999 9999999999


Q ss_pred             HHHHHhchhHHHHHHHhcCCCCHHHHH-HHHHHHHHHHH
Q psy13777         80 LAHIKSSERGLLESIKKEGKITEDTDA-KLKTVVTNFLA  117 (121)
Q Consensus        80 ~~~l~~~~~~~~~~i~~~~~l~~~~~~-~l~~~~~~~~~  117 (121)
                      ++| +.++|++++.|..++.+++++.. -+.-++++|.+
T Consensus       438 ~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  475 (507)
T PRK07165        438 IEN-DPDAKKIFNKIKNNEDVDDELMKNYFAFLLNQYSD  475 (507)
T ss_pred             HHh-hhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            999 99999999999999999988643 45555666655

>PF00306 ATP-synt_ab_C: ATP synthase alpha/beta chain, C terminal domain; InterPro: IPR000793 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.85  E-value=7.3e-21  Score=132.87  Aligned_cols=82  Identities=38%  Similarity=0.681  Sum_probs=72.3

Q ss_pred             ChhhhhhhHHHHHHHh-hcCC-ccHHHHHHHHhHHHHHHHhhcCCCCCC-------C-HHHHHHHHHHHhhCCCCCCChh
Q psy13777          1 MKLELAQYREVAAFAQ-FGSD-LDAATQQLLNRGVRLTELLKQGQYVPM-------A-IEEQVAVIYCGVRGHLDKLDPA   70 (121)
Q Consensus         1 LkL~LAQyrELeaFaq-FgSd-LD~~Tk~~L~rG~rl~elLKQ~q~~P~-------~-~~eQv~~L~a~~~g~ld~i~~~   70 (121)
                      +|+.||||+||++|+| ||+| ||++|+.+|++|++|+++|+|++|+|+       + +.+++.+++++.+|+++++|.+
T Consensus         7 l~~~Laq~~EL~~~~q~vG~d~L~~~~k~~l~~g~~i~e~LkQ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (113)
T PF00306_consen    7 LKLILAQYRELEEFVQFVGSDALDDEDKLILERGRRIREFLKQNAFDPVPLEKQYVMILEETIDLFYAILRGKFDDIPEE   86 (113)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSTCSTHHHHHHHHHHHHHHHHT-BSTTTTTSSHHHHHHHHHHHHHHHHHHHTTTTTTS-GG
T ss_pred             HHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcCCCCCCCCcCcchhhhHHHHHHHHHHHHHhCCCccCCHH
Confidence            5789999999999999 7988 999999999999999999999999999       5 5555556899999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy13777         71 KITTFEKEFLAH   82 (121)
Q Consensus        71 ~v~~f~~~l~~~   82 (121)
                      .+..+......+
T Consensus        87 ~~~~~~~~~~~~   98 (113)
T PF00306_consen   87 ELEKIETKDIEK   98 (113)
T ss_dssp             GHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHH
Confidence            999998877764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the C-terminal domain, which forms a left-handed superhelix composed of 4-5 individual helices. The C-terminal domain can vary between the alpha and beta subunits, and between different ATPases []. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3OAA_U 2F43_B 1MAB_B 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B ....

>PRK04196 V-type ATP synthase subunit B; Provisional

Probab=98.89  E-value=4.9e-09  Score=88.95  Aligned_cols=77  Identities=18%  Similarity=0.303  Sum_probs=70.9

Q ss_pred             ChhhhhhhHHHHHHHhh-c-CCccHHHHHHHHhHHHHH-HHhhcCCCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHH
Q psy13777          1 MKLELAQYREVAAFAQF-G-SDLDAATQQLLNRGVRLT-ELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEK   77 (121)
Q Consensus         1 LkL~LAQyrELeaFaqF-g-SdLD~~Tk~~L~rG~rl~-elLKQ~q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~   77 (121)
                      ++..|+||+||..|++| | ++|++.++..+.+|+++. +.|+|+.++|.+.++++..++    ++++++|.+++..|+.
T Consensus       371 l~~~y~~~~~l~~~~~~~G~~~l~d~~~~~~~~~~~~~~~fL~Q~~~~~~~~~~~~~~l~----~~l~~~~~~~l~~~~~  446 (460)
T PRK04196        371 LYAAYARGKDLRELAAIVGEEALSERDRKYLKFADAFEREFVNQGFDENRSIEETLDLGW----ELLSILPESELKRIKD  446 (460)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHH----HHHhhCCHHHHHHHHH
Confidence            46789999999999999 6 799999999999999997 899999999999999999876    6678999999999999


Q ss_pred             HHHH
Q psy13777         78 EFLA   81 (121)
Q Consensus        78 ~l~~   81 (121)
                      .+++
T Consensus       447 ~l~~  450 (460)
T PRK04196        447 EYIE  450 (460)
T ss_pred             HHHH
Confidence            9976

>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit

Probab=98.73  E-value=3.8e-08  Score=83.58  Aligned_cols=77  Identities=17%  Similarity=0.310  Sum_probs=70.5

Q ss_pred             ChhhhhhhHHHHHHHhh-cC-CccHHHHHHHHhHHH-HHHHhhcCCCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHH
Q psy13777          1 MKLELAQYREVAAFAQF-GS-DLDAATQQLLNRGVR-LTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEK   77 (121)
Q Consensus         1 LkL~LAQyrELeaFaqF-gS-dLD~~Tk~~L~rG~r-l~elLKQ~q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~   77 (121)
                      |+..|++|+||+.+.+| |+ +|++.++..+.+|++ +++.|+|+.++|.+.++++..++    ++++.+|.+.+..|..
T Consensus       369 l~~~y~~~~~L~~i~~~~G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~~~~~l~----~~l~~~~~~~~~~~~~  444 (458)
T TIGR01041       369 LYAAYAEGRDLRGLVAIVGEEALSERDRKYLKFADLFERRFVRQGRNENRSIEETLDIGW----ELLSILPESELKRIDE  444 (458)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHH----HHHhhCCHHHHHHHHH
Confidence            35689999999999999 87 999999999999999 58999999999999999999984    5678999999999999


Q ss_pred             HHHH
Q psy13777         78 EFLA   81 (121)
Q Consensus        78 ~l~~   81 (121)
                      .+++
T Consensus       445 ~~~~  448 (458)
T TIGR01041       445 EYIE  448 (458)
T ss_pred             HHHH
Confidence            9875

Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.

>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit

Probab=98.44  E-value=2e-06  Score=74.90  Aligned_cols=57  Identities=21%  Similarity=0.326  Sum_probs=53.2

Q ss_pred             hhhhhHHHHHHHhh-cCC-ccHHHHHHHHhHHHHHHH-hhcCCCCCC----CHHHHHHHHHHHh
Q psy13777          4 ELAQYREVAAFAQF-GSD-LDAATQQLLNRGVRLTEL-LKQGQYVPM----AIEEQVAVIYCGV   60 (121)
Q Consensus         4 ~LAQyrELeaFaqF-gSd-LD~~Tk~~L~rG~rl~el-LKQ~q~~P~----~~~eQv~~L~a~~   60 (121)
                      -|++|+||+.+.|+ |+| |++..+..+.+|+++++. |+|+.|+|+    |.++|+..|.++.
T Consensus       460 lL~~~~el~~iv~lvG~d~L~~~d~~il~~a~~i~e~FLqQ~~~~~~d~~~~~~k~~~~L~~i~  523 (578)
T TIGR01043       460 LLQKESELQEIVQLVGPDALPERQKLILEVARMIREAFLQQNAFDPVDTYCPPQKQYRILRAIM  523 (578)
T ss_pred             HHHHHHHHHHHHhccCCCCCCHHHHHHHHHhHHHHHhhCCCCCCCCccCCCCHHHHHHHHHHHH
Confidence            48999999999999 999 999999999999999976 999999999    9999999887764

Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=98.43  E-value=6.1e-07  Score=75.45  Aligned_cols=60  Identities=22%  Similarity=0.295  Sum_probs=56.5

Q ss_pred             ChhhhhhhHHHHHHHhhcC---CccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHh
Q psy13777          1 MKLELAQYREVAAFAQFGS---DLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV   60 (121)
Q Consensus         1 LkL~LAQyrELeaFaqFgS---dLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~~   60 (121)
                      +|-.||+|+|++.+.++|+   .+|+.+.+.+.+|.+|.++|+|+.+++.+.++++..|+++-
T Consensus       359 ~~~~l~~y~e~~~li~~g~y~~g~d~~~d~~i~~~~~i~~fl~Q~~~~~~~~~~~~~~l~~~~  421 (422)
T TIGR02546       359 LRRLLATYKEVELLIRLGEYQPGSDPETDDAIDKIDAIRAFLRQSTDEYSPYEETLEQLHALV  421 (422)
T ss_pred             HHHHHHhhHHHHHHHHhcCCcCCCCHHHHHHHHhHHHHHHHhCCCCCCCCCHHHHHHHHHHHh
Confidence            4678999999999999997   99999999999999999999999999999999999999864

>PRK06315 type III secretion system ATPase; Provisional

Probab=98.34  E-value=1.2e-06  Score=74.17  Aligned_cols=59  Identities=19%  Similarity=0.197  Sum_probs=55.4

Q ss_pred             ChhhhhhhHHHHHHHhhcC---CccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q psy13777          1 MKLELAQYREVAAFAQFGS---DLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCG   59 (121)
Q Consensus         1 LkL~LAQyrELeaFaqFgS---dLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~   59 (121)
                      +|..||+|+|+|.|.+||.   ..|+.+...+.++.+|.+.|+|+.++|++.++++..|..+
T Consensus       379 ~r~~l~~y~e~e~li~~g~y~~g~d~~~d~ai~~~~~i~~fL~Q~~~e~~~~~~~~~~l~~~  440 (442)
T PRK06315        379 AREVLAKYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEAAQQLRAI  440 (442)
T ss_pred             HHHHHHhhhhhHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            4678999999999999998   9999999999999999999999999999999999887765

>PRK09099 type III secretion system ATPase; Provisional

Probab=98.29  E-value=1.9e-06  Score=73.09  Aligned_cols=59  Identities=19%  Similarity=0.193  Sum_probs=55.3

Q ss_pred             ChhhhhhhHHHHHHHhhc---CCccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q psy13777          1 MKLELAQYREVAAFAQFG---SDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCG   59 (121)
Q Consensus         1 LkL~LAQyrELeaFaqFg---SdLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~   59 (121)
                      +|-.||+|+|++.+.++|   ...|+.+...+.+|.+|.+.|+|+.++|.+.++++..|..+
T Consensus       377 lr~~la~y~e~e~li~iG~y~~g~d~~~d~~i~~~~~i~~fL~Q~~~~~~~~~~t~~~l~~~  438 (441)
T PRK09099        377 LRQLLAKHREVETLLQVGEYRAGSDPVADEAIAKIDAIRDFLSQRTDEYSDPDATLAALAEL  438 (441)
T ss_pred             HHHHHHhhHHHHHHHHhcCccCCCChhHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            467899999999999999   79999999999999999999999999999999999888765

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=98.27  E-value=2.3e-06  Score=72.10  Aligned_cols=58  Identities=21%  Similarity=0.379  Sum_probs=52.5

Q ss_pred             ChhhhhhhHHHHHHHhhcC---CccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q psy13777          1 MKLELAQYREVAAFAQFGS---DLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYC   58 (121)
Q Consensus         1 LkL~LAQyrELeaFaqFgS---dLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a   58 (121)
                      +|-.||+|+|++.|.+||.   .+|+.+...+++|.+|.+.|+|++++|++.++-+--|..
T Consensus       356 ~r~~l~~y~e~~~~~~~g~y~~g~d~~~d~ai~~~~~i~~fl~Q~~~~~~~~~~~~~~l~~  416 (418)
T TIGR03498       356 LRALLARYEETEDLIRLGAYRKGSDPELDEAIRLVPKIYEFLTQGPDEPTSLQDPFADLAA  416 (418)
T ss_pred             HHHHHHhhHHHHHHHHhhCCcCCCCHHHHHHHHhHHHHHHHhCCCCCCCCCHHHHHHHHHh
Confidence            4678999999999999998   699999999999999999999999999998876655543

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK06936 type III secretion system ATPase; Provisional

Probab=98.23  E-value=2.8e-06  Score=71.96  Aligned_cols=59  Identities=24%  Similarity=0.307  Sum_probs=55.4

Q ss_pred             ChhhhhhhHHHHHHHhhcC---CccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q psy13777          1 MKLELAQYREVAAFAQFGS---DLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCG   59 (121)
Q Consensus         1 LkL~LAQyrELeaFaqFgS---dLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~   59 (121)
                      +|-.||+|+|++.|.++|.   .+|+.+.+.+.++.+|.+.|+|+.++|.+.++++..|+.+
T Consensus       376 ~r~~la~y~e~e~li~iG~y~~g~d~~~d~ai~~~~~i~~fL~Q~~~~~~~~~~~~~~l~~~  437 (439)
T PRK06936        376 LRELLAKYEEVELLLQIGEYQKGQDKEADQAIERIGAIRGFLRQGTHELSHFNETLNLLETL  437 (439)
T ss_pred             HHHHHHcchHHHHHHHhcCccCCCCHHHHHHHHhHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence            4678999999999999997   8899999999999999999999999999999999998876

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.18  E-value=2.5e-06  Score=72.48  Aligned_cols=58  Identities=28%  Similarity=0.393  Sum_probs=50.2

Q ss_pred             ChhhhhhhHHHHHH-----HhhcCC--ccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhCC
Q psy13777          1 MKLELAQYREVAAF-----AQFGSD--LDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGH   63 (121)
Q Consensus         1 LkL~LAQyrELeaF-----aqFgSd--LD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~~~g~   63 (121)
                      +|..||+|+|++.|     .+||||  +|.++++    |.+|.+.|+|+.++|.+ ++-+.-|..+..|-
T Consensus       380 ~r~~la~y~e~e~li~ig~y~~G~d~~~D~ai~~----~~~i~~fL~Q~~~~~~~-~~~~~~l~~~~~~~  444 (450)
T PRK06002        380 LKSMIARFEETRDLRLIGGYRAGSDPDLDQAVDL----VPRIYEALRQSPGDPPS-DDAFADLAAALKGA  444 (450)
T ss_pred             HHHHHHHHHHHHHHHHhhccccCCChHHHHHHHh----HHHHHHHhCCCCCCCCC-HHHHHHHHHHHhhH
Confidence            47789999999999     699999  8887654    99999999999999999 77777787777664

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=98.15  E-value=5.1e-06  Score=70.30  Aligned_cols=59  Identities=19%  Similarity=0.229  Sum_probs=53.7

Q ss_pred             ChhhhhhhHHHHHHHhhcC---CccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q psy13777          1 MKLELAQYREVAAFAQFGS---DLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCG   59 (121)
Q Consensus         1 LkL~LAQyrELeaFaqFgS---dLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~   59 (121)
                      +|-.||+|+|+|.|.+||.   ..|+.+.+.+++|.+|++.|+|+..+|++.++-+--|..+
T Consensus       369 ~r~~la~y~e~e~li~~G~y~~g~d~~~d~ai~~~~~i~~fl~Q~~~~~~~~~~~~~~l~~~  430 (433)
T PRK07594        369 LRRCLALYQEVELLIRIGEYQRGVDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI  430 (433)
T ss_pred             HHHHHHcchHHHHHHHhcCCCCCCCHHHHHHHHhhHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            4678999999999999998   9999999999999999999999999999998876666544

>PRK08149 ATP synthase SpaL; Validated

Probab=98.10  E-value=9.1e-06  Score=68.72  Aligned_cols=59  Identities=15%  Similarity=0.210  Sum_probs=53.1

Q ss_pred             ChhhhhhhHHHHHHHhhcCC---ccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q psy13777          1 MKLELAQYREVAAFAQFGSD---LDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCG   59 (121)
Q Consensus         1 LkL~LAQyrELeaFaqFgSd---LD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~   59 (121)
                      +|-.||+|+|++.|.+||..   -|+.+...+.++.+|.+.|+|+.++|.+.++++..|..+
T Consensus       365 ~r~~l~~y~e~e~li~~G~y~~g~~~~~d~ai~~~~~i~~fl~Q~~~~~~~~~~~~~~l~~~  426 (428)
T PRK08149        365 FRKLLTRLEELQLFIDLGEYRRGENADNDRAMDKRPALEAFLKQDVAEKSSFSDTLERLNEF  426 (428)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            46789999999999999975   388888899999999999999999999999999887654

>CHL00060 atpB ATP synthase CF1 beta subunit

Probab=98.09  E-value=1.3e-05  Score=68.80  Aligned_cols=72  Identities=21%  Similarity=0.353  Sum_probs=65.0

Q ss_pred             ChhhhhhhHHHHHH-Hhhc-CCccHHHHHHHHhHHHHHHHhhcCCC----------CCCCHHHHHHHHHHHhhCCCCCCC
Q psy13777          1 MKLELAQYREVAAF-AQFG-SDLDAATQQLLNRGVRLTELLKQGQY----------VPMAIEEQVAVIYCGVRGHLDKLD   68 (121)
Q Consensus         1 LkL~LAQyrELeaF-aqFg-SdLD~~Tk~~L~rG~rl~elLKQ~q~----------~P~~~~eQv~~L~a~~~g~ld~i~   68 (121)
                      +|-.||+|+|++.+ +.+| .++++.++..+.+|++|.+.|+|+.|          ++.+.++-+..|..+.+|.+|++|
T Consensus       387 ~r~~la~y~e~e~li~~~g~~~ls~~~~~~i~~~~~i~~fL~Q~~f~~e~ft~~~~~~~~~~~~~~~l~~i~~g~~~~~~  466 (494)
T CHL00060        387 VKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLP  466 (494)
T ss_pred             HHHHHHHhHHHHHHHHHhCcccCCHHHHHHHHhHHHHHHHhcCCcchhhcccCCCCcccCHHHHHHHHHHHhCCCccCCC
Confidence            46789999999997 6677 49999999999999999999999944          899999999999999999999999


Q ss_pred             hhHH
Q psy13777         69 PAKI   72 (121)
Q Consensus        69 ~~~v   72 (121)
                      ....
T Consensus       467 ~~~~  470 (494)
T CHL00060        467 EQAF  470 (494)
T ss_pred             HHHh
Confidence            8764

>PRK12597 F0F1 ATP synthase subunit beta; Provisional

Probab=98.09  E-value=1.3e-05  Score=68.40  Aligned_cols=72  Identities=22%  Similarity=0.343  Sum_probs=65.2

Q ss_pred             ChhhhhhhHHHHHHHh-hc-CCccHHHHHHHHhHHHHHHHhhcCC----------CCCCCHHHHHHHHHHHhhCCCCCCC
Q psy13777          1 MKLELAQYREVAAFAQ-FG-SDLDAATQQLLNRGVRLTELLKQGQ----------YVPMAIEEQVAVIYCGVRGHLDKLD   68 (121)
Q Consensus         1 LkL~LAQyrELeaFaq-Fg-SdLD~~Tk~~L~rG~rl~elLKQ~q----------~~P~~~~eQv~~L~a~~~g~ld~i~   68 (121)
                      +|-.||+|+|++...+ +| .++|+.+...+.+|++|.+.|+|+.          ..+.+.++-+-.|+.+.+|-+|++|
T Consensus       362 ~r~~la~y~e~e~li~i~gy~~l~~~~d~~i~~~~~i~~fL~Q~~~~~~~~t~~~~~~~~~~~~~~~l~~i~~g~~~~~~  441 (461)
T PRK12597        362 VKRILQRYKELEDVIAILGIDELSAEDKIIVKRARQLQRFLTQPFFVTEAFTGEPGVSVPLEETLDSCERILNGEYDDWS  441 (461)
T ss_pred             HHHHHHhhhhHHHHHHHcCCccCCHHHHHHHHhHHHHHHHhCCCcchhhcccCCCCcccCHHHHHHHHHHHhCCCccCCC
Confidence            3668999999999555 77 4899999999999999999999999          6799999999999999999999999


Q ss_pred             hhHH
Q psy13777         69 PAKI   72 (121)
Q Consensus        69 ~~~v   72 (121)
                      ....
T Consensus       442 ~~~~  445 (461)
T PRK12597        442 EESF  445 (461)
T ss_pred             HHHH
Confidence            8753

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=98.09  E-value=9.8e-06  Score=68.60  Aligned_cols=56  Identities=20%  Similarity=0.343  Sum_probs=49.8

Q ss_pred             ChhhhhhhHHHHHHHhhcC-------CccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHh
Q psy13777          1 MKLELAQYREVAAFAQFGS-------DLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV   60 (121)
Q Consensus         1 LkL~LAQyrELeaFaqFgS-------dLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~~   60 (121)
                      +|-.||+|+|++.|.+||+       ++|.+    +.++.+|.+.|+|+.++|.+.++++..|+.+.
T Consensus       372 ~r~~l~~y~e~~~li~~g~y~~g~~~~~d~a----~~~~~~~~~fl~Q~~~~~~~~~~~~~~l~~~~  434 (438)
T PRK07721        372 FRELLSTYQNSEDLINIGAYKRGSSREIDEA----IQFYPQIISFLKQGTDEKATFEESIQALLSLF  434 (438)
T ss_pred             HHHHHHHhHHHHHHHHhhCCcCCCCHHHHHH----HHhHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence            4678999999999999998       66655    66799999999999999999999999998875

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.08  E-value=1.1e-05  Score=68.37  Aligned_cols=59  Identities=19%  Similarity=0.224  Sum_probs=54.0

Q ss_pred             ChhhhhhhHHHHHHHhhcC---CccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q psy13777          1 MKLELAQYREVAAFAQFGS---DLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCG   59 (121)
Q Consensus         1 LkL~LAQyrELeaFaqFgS---dLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~   59 (121)
                      +|..||+|+|++.|.+||+   ..|+.+...+.++.+|.+.|+|+.++|.+.++-+--|..+
T Consensus       370 ~r~~~a~y~e~~~li~~g~y~~g~d~~~d~ai~~~~~i~~fL~Q~~~e~~~~~~~~~~l~~~  431 (434)
T PRK07196        370 LKQCYADYMAIKPLIPLGGYVAGADPMADQAVHYYPAITQFLRQEVGHPALFSASVEQLTGM  431 (434)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            4778999999999999998   9999999999999999999999999999998877666654

>PRK05688 fliI flagellum-specific ATP synthase; Validated

Probab=98.06  E-value=1e-05  Score=68.76  Aligned_cols=60  Identities=15%  Similarity=0.223  Sum_probs=54.7

Q ss_pred             ChhhhhhhH---HHHHHHhhcCCccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHh
Q psy13777          1 MKLELAQYR---EVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV   60 (121)
Q Consensus         1 LkL~LAQyr---ELeaFaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~~   60 (121)
                      +|..||+|+   ||..|..|++..|+.+.+.+.++.+|.+.|+|+.++|.+.++++--|..+.
T Consensus       384 ~r~~la~y~~~~dli~~g~y~~g~d~~~d~ai~~~~~i~~fL~Q~~~e~~~~~~~~~~l~~~~  446 (451)
T PRK05688        384 FKQLWSRYQQSRDLISVGAYVAGGDPETDLAIARFPHLVQFLRQGLRENVSLAQSREQLAAIF  446 (451)
T ss_pred             HHHHHHHHHHHHHHHHHhCccCCCCHHHHHHHHhhHHHHHHhCCCCCCCCCHHHHHHHHHHHh
Confidence            467799999   888999999999999999999999999999999999999999998777653

>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta

Probab=98.06  E-value=1.6e-05  Score=67.68  Aligned_cols=72  Identities=21%  Similarity=0.371  Sum_probs=66.2

Q ss_pred             ChhhhhhhHHHHH-HHhhc-CCccHHHHHHHHhHHHHHHHhhcCCCCC----------CCHHHHHHHHHHHhhCCCCCCC
Q psy13777          1 MKLELAQYREVAA-FAQFG-SDLDAATQQLLNRGVRLTELLKQGQYVP----------MAIEEQVAVIYCGVRGHLDKLD   68 (121)
Q Consensus         1 LkL~LAQyrELea-FaqFg-SdLD~~Tk~~L~rG~rl~elLKQ~q~~P----------~~~~eQv~~L~a~~~g~ld~i~   68 (121)
                      +|..||+|+|++. ++.+| .++.+..+..+.+|++|.+.|+|+.|.+          +++++-+-..+.+-+|.+|++|
T Consensus       357 ~~~~l~~y~e~~~li~~~g~~~l~~~~~~~i~~~~~i~~fL~Q~~~~~e~~t~~~g~~v~l~~tl~~~~~il~g~~~~~~  436 (449)
T TIGR03305       357 VRQTLAQYEELKDIIAMLGLEQLSREDRRVVNRARRLERFLTQPFFTTEQFTGMKGKTVSLEDALDGCERILNDEFQDYP  436 (449)
T ss_pred             HHHHHHHHHHHHHHHHhhCCccCCHHHHHHHHHHHHHHHHhCCCCcccccccCCCCceeEHHHHHHHHHHHhcCCcccCC
Confidence            4678999999999 68888 6999999999999999999999999999          9999999999999999999999


Q ss_pred             hhHH
Q psy13777         69 PAKI   72 (121)
Q Consensus        69 ~~~v   72 (121)
                      ....
T Consensus       437 ~~~~  440 (449)
T TIGR03305       437 ERDL  440 (449)
T ss_pred             HHHh
Confidence            8753

A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.

>PRK08472 fliI flagellum-specific ATP synthase; Validated

Probab=98.05  E-value=1.1e-05  Score=68.29  Aligned_cols=59  Identities=14%  Similarity=0.154  Sum_probs=54.3

Q ss_pred             ChhhhhhhHHHHHHHhhcC---CccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q psy13777          1 MKLELAQYREVAAFAQFGS---DLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCG   59 (121)
Q Consensus         1 LkL~LAQyrELeaFaqFgS---dLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~   59 (121)
                      +|-.||+|+|+|.+.++|.   ..|+.+.+.+.+|.+|.+.|+|+.++|++.++++.-|..+
T Consensus       371 ~r~~l~~y~e~e~li~~G~y~~g~d~~~d~ai~~~~~i~~fL~Q~~~~~~~~~~~~~~l~~~  432 (434)
T PRK08472        371 FKRLYSLLKENEVLIRIGAYQKGNDKELDEAISKKEFMEQFLKQNPNELFPFEQTFEQLEEI  432 (434)
T ss_pred             HHHHHHhchhHHHHHHhhCccCCCCHHHHHHHHhHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            4678999999999999998   9999999999999999999999999999999998776554

>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI

Probab=98.02  E-value=9.9e-06  Score=68.07  Aligned_cols=53  Identities=25%  Similarity=0.345  Sum_probs=48.7

Q ss_pred             ChhhhhhhHHHHHHHhhc---CCccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHH
Q psy13777          1 MKLELAQYREVAAFAQFG---SDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQV   53 (121)
Q Consensus         1 LkL~LAQyrELeaFaqFg---SdLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv   53 (121)
                      +|-.||+|+|++.+.++|   +..|+.+.+.+.+|++|.+.|+|+.++|.+.++-+
T Consensus       353 ~r~~l~~y~e~~~l~~~g~y~~g~d~~~d~~i~~~~~i~~fl~Q~~~~~~~~~~~~  408 (411)
T TIGR03496       353 FKQLLSRYQENRDLISIGAYQAGSDPELDQAIALYPRIEAFLQQGMRERASFEESL  408 (411)
T ss_pred             HHHHHHHhHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHH
Confidence            467899999999999999   78999999999999999999999999999987643

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK08972 fliI flagellum-specific ATP synthase; Validated

Probab=98.00  E-value=1.6e-05  Score=67.47  Aligned_cols=59  Identities=10%  Similarity=0.128  Sum_probs=53.6

Q ss_pred             hhhhhhhHHHH---HHHhhcCCccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHh
Q psy13777          2 KLELAQYREVA---AFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV   60 (121)
Q Consensus         2 kL~LAQyrELe---aFaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~~   60 (121)
                      |-.||+|+|++   ++..|+++.|+.+.+.+++|.+|.++|+|+.++|.+.++-+.-|..+.
T Consensus       379 r~~ls~y~~~e~li~~g~y~~g~d~~~d~ai~~~~~i~~fl~Q~~~~~~~~~~~~~~l~~~~  440 (444)
T PRK08972        379 KQVYSLYQQNRDLISIGAYKQGSDPRIDNAIRLQPAMNAFLQQTMKEAVPYDMSVNMLKQLA  440 (444)
T ss_pred             HHHHHHHHHHHHHHHHhCccCCCCHHHHHHHHhhHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence            56788999988   999999999999999999999999999999999999998877776654

>PRK06820 type III secretion system ATPase; Validated

Probab=97.95  E-value=2.3e-05  Score=66.46  Aligned_cols=59  Identities=19%  Similarity=0.260  Sum_probs=53.7

Q ss_pred             ChhhhhhhHHHHHHHhhcC---CccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q psy13777          1 MKLELAQYREVAAFAQFGS---DLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCG   59 (121)
Q Consensus         1 LkL~LAQyrELeaFaqFgS---dLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~   59 (121)
                      +|-.||+|+|++.+.+||+   .+|+.+.+.+.+|.++.+.|+|+.+++.+.++-+-.|+.+
T Consensus       377 ~r~~l~~y~e~~~li~~G~y~~g~d~~~d~~i~~~~~i~~fL~Q~~~e~~~~~~~~~~l~~~  438 (440)
T PRK06820        377 LRRMLACYQEIELLVRVGEYQAGEDLQADEALQRYPAICAFLQQDHSETAHLETTLEHLAQV  438 (440)
T ss_pred             HHHHHHhhhHHHHHHHhhCccCCCCHHHHHHHHhhHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            3667999999999999999   8999999999999999999999999999998877766654

>PRK14698 V-type ATP synthase subunit A; Provisional

Probab=97.93  E-value=2.2e-05  Score=72.29  Aligned_cols=57  Identities=21%  Similarity=0.226  Sum_probs=51.8

Q ss_pred             hhhhhHHHHHHHhh-cC-CccHHHHHHHHhHHHHHHH-hhcCCCCC----CCHHHHHHHHHHHh
Q psy13777          4 ELAQYREVAAFAQF-GS-DLDAATQQLLNRGVRLTEL-LKQGQYVP----MAIEEQVAVIYCGV   60 (121)
Q Consensus         4 ~LAQyrELeaFaqF-gS-dLD~~Tk~~L~rG~rl~el-LKQ~q~~P----~~~~eQv~~L~a~~   60 (121)
                      -|++|+||+.+.|+ |+ +|++.++.++.+|++|++. |+|+.|+|    .|.++|+..|+++.
T Consensus       894 ~l~~~~el~~~i~l~g~~~l~~~d~~~~~~~~~i~e~fL~Q~~~~~~d~~~~~~~~~~~l~~i~  957 (1017)
T PRK14698        894 LLQKEAELQEIVRIVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLL  957 (1017)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhHHHHhccCCCCCCCccccCCCHHHHHHHHHHHH
Confidence            48999999999999 65 5999999999999999975 99999999    79999999988764

>TIGR01039 atpD ATP synthase, F1 beta subunit

Probab=97.93  E-value=4.2e-05  Score=65.27  Aligned_cols=72  Identities=17%  Similarity=0.277  Sum_probs=65.2

Q ss_pred             ChhhhhhhHHHHHHH-hhc-CCccHHHHHHHHhHHHHHHHhhcCC----------CCCCCHHHHHHHHHHHhhCCCCCCC
Q psy13777          1 MKLELAQYREVAAFA-QFG-SDLDAATQQLLNRGVRLTELLKQGQ----------YVPMAIEEQVAVIYCGVRGHLDKLD   68 (121)
Q Consensus         1 LkL~LAQyrELeaFa-qFg-SdLD~~Tk~~L~rG~rl~elLKQ~q----------~~P~~~~eQv~~L~a~~~g~ld~i~   68 (121)
                      +|-.||+|+|++.+. .+| .++++.++..+.+|++|.+.|+|+.          .++.+.++.+.-|.++.+|-+|++|
T Consensus       362 ~r~~la~y~e~~~li~i~g~~~lsd~~~~~l~~~~~i~~fL~Q~~~~~~~~t~~~~~~~~~~~~~~~l~~i~~g~~~~~~  441 (461)
T TIGR01039       362 VQQILQRYKELQDIIAILGMDELSEEDKLTVERARRIQRFLSQPFFVAEVFTGQPGKYVPLKDTIRGFKEILEGKYDHLP  441 (461)
T ss_pred             HHHHHHhhhHHHHHHHHhCCccCCHHHHHHHHhHHHHHHHhCCCCchhccccCCCCcccCHHHHHHHHHHHhCCCccCCC
Confidence            366799999999965 566 3799999999999999999999999          8999999999999999999999999


Q ss_pred             hhHH
Q psy13777         69 PAKI   72 (121)
Q Consensus        69 ~~~v   72 (121)
                      .+..
T Consensus       442 ~~~~  445 (461)
T TIGR01039       442 EQAF  445 (461)
T ss_pred             HHHH
Confidence            8864

The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=97.89  E-value=1.7e-05  Score=67.22  Aligned_cols=58  Identities=21%  Similarity=0.350  Sum_probs=50.9

Q ss_pred             ChhhhhhhHHHHHHHhhcCCccHHHHHHH----HhHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q psy13777          1 MKLELAQYREVAAFAQFGSDLDAATQQLL----NRGVRLTELLKQGQYVPMAIEEQVAVIYC   58 (121)
Q Consensus         1 LkL~LAQyrELeaFaqFgSdLD~~Tk~~L----~rG~rl~elLKQ~q~~P~~~~eQv~~L~a   58 (121)
                      +|-.||+|+|+|.|.+||+..+.++....    .+|.+|++.|||+.++|++.++-+--|..
T Consensus       369 ~r~~la~y~e~e~~i~~g~y~~g~~~~~d~ai~~~~~~i~~fl~Q~~~~~~~~~~~~~~l~~  430 (432)
T PRK06793        369 MRKILSIYKENELYFKLGTIQENAENAYIFECKNKVEGINTFLKQGRSDSFQFDDIVEAMHH  430 (432)
T ss_pred             HHHHHHhChHHHHHHHhCCccCCCCHHHHHHHHHhHHHHHHHhCCCCCCCCCHHHHHHHHHh
Confidence            47789999999999999999888887776    69999999999999999999887655543

>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI

Probab=97.84  E-value=4.8e-05  Score=64.00  Aligned_cols=59  Identities=20%  Similarity=0.289  Sum_probs=52.2

Q ss_pred             ChhhhhhhHHHHHHHhhcCCc---cHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q psy13777          1 MKLELAQYREVAAFAQFGSDL---DAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCG   59 (121)
Q Consensus         1 LkL~LAQyrELeaFaqFgSdL---D~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~   59 (121)
                      +|-.|++|.|++.+.++|+--   |+.+.+.+.+|++|.++|+|+.++|.+.++++..|..+
T Consensus       351 ~r~~l~~y~e~~~li~~g~~~~g~d~~~~~~i~~~~~i~~fl~Q~~~~~~~~~~~~~~l~~~  412 (413)
T TIGR03497       351 LRELLAVYKEAEDLINIGAYKRGSNPKIDEAIRYIEKINSFLKQGIDEKFTFEETVQLLKTL  412 (413)
T ss_pred             HHHHHHhhHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhh
Confidence            356799999999999995422   88899999999999999999999999999999888754

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK08927 fliI flagellum-specific ATP synthase; Validated

Probab=97.78  E-value=6.3e-05  Score=63.94  Aligned_cols=61  Identities=18%  Similarity=0.308  Sum_probs=57.6

Q ss_pred             hhhhhhhHHHHHHHhhcC---CccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhC
Q psy13777          2 KLELAQYREVAAFAQFGS---DLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRG   62 (121)
Q Consensus         2 kL~LAQyrELeaFaqFgS---dLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~~~g   62 (121)
                      |--|++|.|++.+.++|+   ..|+.+...+.+|.++.+.|+|+.+++.+.++++-.|+.+.+|
T Consensus       375 r~~l~~y~e~edli~lg~y~~g~d~~~d~ai~~~~~i~~fL~Q~~~e~~~~~~~~~~l~~l~~~  438 (442)
T PRK08927        375 RQLMATYADMEELIRLGAYRAGSDPEVDEAIRLNPALEAFLRQGKDEATSLAEGYARLAQILGG  438 (442)
T ss_pred             HHHHHHHHHHHHHHHhhCCcCCCCHHHHHHHHccHHHHHhcCCCCCCCCCHHHHHHHHHHHhcc
Confidence            667999999999999998   8999999999999999999999999999999999999988765

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=97.74  E-value=7.8e-05  Score=63.21  Aligned_cols=59  Identities=19%  Similarity=0.253  Sum_probs=52.2

Q ss_pred             ChhhhhhhHHHHHHHhhcCCc---cHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q psy13777          1 MKLELAQYREVAAFAQFGSDL---DAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCG   59 (121)
Q Consensus         1 LkL~LAQyrELeaFaqFgSdL---D~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~   59 (121)
                      +|-.||+|+|++.+.++|...   |+.+.+.+.+|++|.+.|+|+.++|++.++++--|..+
T Consensus       377 ~r~~l~~y~e~~~li~ig~y~~g~d~~~d~~i~~~~~i~~fL~Q~~~~~~~~~~~~~~l~~~  438 (440)
T TIGR01026       377 FRELLSKYKDNEDLIRIGAYQRGSDRELDFAIAKYPKLERFLKQGINEKVNFEESLQQLEEI  438 (440)
T ss_pred             HHHHHHhhHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHh
Confidence            467899999999999998653   78888889999999999999999999999998776654

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>PRK09280 F0F1 ATP synthase subunit beta; Validated

Probab=97.62  E-value=0.00022  Score=60.93  Aligned_cols=72  Identities=17%  Similarity=0.276  Sum_probs=65.2

Q ss_pred             ChhhhhhhHHHHHH-Hhhc-CCccHHHHHHHHhHHHHHHHhhcCC----------CCCCCHHHHHHHHHHHhhCCCCCCC
Q psy13777          1 MKLELAQYREVAAF-AQFG-SDLDAATQQLLNRGVRLTELLKQGQ----------YVPMAIEEQVAVIYCGVRGHLDKLD   68 (121)
Q Consensus         1 LkL~LAQyrELeaF-aqFg-SdLD~~Tk~~L~rG~rl~elLKQ~q----------~~P~~~~eQv~~L~a~~~g~ld~i~   68 (121)
                      +|-.||+|+|++.. +-+| ..+++.++..+.+|++|.+.|+|+.          ..+.+.++-+.-|..+.+|-+|++|
T Consensus       363 ~r~~la~y~e~e~li~i~gy~~~sd~~d~ai~~~~~i~~fL~Q~~~~~~~ft~~~~~~~~~~~~~~~l~~i~~g~~~~~~  442 (463)
T PRK09280        363 VQQILQRYKELQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFFVAEQFTGSPGKYVPLKDTIRGFKEILEGEYDHLP  442 (463)
T ss_pred             HHHHHHHhHHHHHHHHhhCCccCCHHHHHHHHhhHHHHHhccCCcchhhcccCCCCcccCHHHHHHHHHHHhCCCccCCC
Confidence            36679999999995 5677 4799999999999999999999999          9999999999999999999999999


Q ss_pred             hhHH
Q psy13777         69 PAKI   72 (121)
Q Consensus        69 ~~~v   72 (121)
                      ..+.
T Consensus       443 ~~~~  446 (463)
T PRK09280        443 EQAF  446 (463)
T ss_pred             HHHH
Confidence            8764

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=97.60  E-value=7.6e-05  Score=61.13  Aligned_cols=41  Identities=22%  Similarity=0.400  Sum_probs=38.9

Q ss_pred             ChhhhhhhHHHHHHHhhcC---CccHHHHHHHHhHHHHHHHhhc
Q psy13777          1 MKLELAQYREVAAFAQFGS---DLDAATQQLLNRGVRLTELLKQ   41 (121)
Q Consensus         1 LkL~LAQyrELeaFaqFgS---dLD~~Tk~~L~rG~rl~elLKQ   41 (121)
                      +|-.|++|+|++.|.+||+   .+|+.+.+.+.||++|.+.|+|
T Consensus       283 ~r~~l~~y~e~~~~i~~g~y~~g~d~~~d~~i~~~~~i~~~l~Q  326 (326)
T cd01136         283 LRELLSAYQEVEDLIRIGAYKKGSDPEVDEAIKLLPKIEAFLKQ  326 (326)
T ss_pred             HHHHHHHhHHHHHHHHhcCCCCCCCHHHHHHHHhHHHHHHHhCC
Confidence            4778999999999999998   8999999999999999999998

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>PRK04192 V-type ATP synthase subunit A; Provisional

Probab=96.73  E-value=0.045  Score=48.30  Aligned_cols=57  Identities=21%  Similarity=0.314  Sum_probs=50.3

Q ss_pred             hhhhhhhHHHHHHHhh-cCC-ccHHHHHHHHhHHHHHH-HhhcCCCCCC----CHHHHHHHHHH
Q psy13777          2 KLELAQYREVAAFAQF-GSD-LDAATQQLLNRGVRLTE-LLKQGQYVPM----AIEEQVAVIYC   58 (121)
Q Consensus         2 kL~LAQyrELeaFaqF-gSd-LD~~Tk~~L~rG~rl~e-lLKQ~q~~P~----~~~eQv~~L~a   58 (121)
                      |--|+.|+|++...+. |.| |.+..+..|+++++|++ .|+|+.|.+.    |++.|..+|-+
T Consensus       461 ~~~L~~~~el~eiv~lvG~d~Ls~~d~~~l~~a~~i~~~fL~Q~~f~~~d~~~~l~k~~~~l~~  524 (586)
T PRK04192        461 MDLLQREAELQEIVRLVGPDALPEEDRLILEVARLIREDFLQQNAFDPVDTYCPPEKQYEMLKL  524 (586)
T ss_pred             HHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHhhcCCCCCCCccccccHHHHHHHHHH
Confidence            3458999999999997 997 99999999999999995 9999999999    88988866543

>PRK02118 V-type ATP synthase subunit B; Provisional

Probab=96.70  E-value=0.0075  Score=51.39  Aligned_cols=62  Identities=18%  Similarity=0.112  Sum_probs=53.8

Q ss_pred             hhhhhhhHHHHHHHhhcCCccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhCCC
Q psy13777          2 KLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHL   64 (121)
Q Consensus         2 kL~LAQyrELeaFaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~~~g~l   64 (121)
                      |-.||.|+|++.+.++|.+|++.++..+.+|+++-..|-| |..-.++++-+-..+.+-+++.
T Consensus       353 ~~~~a~y~e~~dli~iG~eLs~~d~~~l~~~~~~e~~~~~-~g~~~~~~etl~~~~~~l~~~~  414 (436)
T PRK02118        353 IRLYADSREAKEKMAMGFKLSNWDEKLLKFSELFESRLMD-LEVNIPLEEALDLGWKILAQCF  414 (436)
T ss_pred             HHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhhc-CCCcccHHHHHHHHHHHHHHCC
Confidence            5679999999999999999999999999999999999877 4488888888877777766553

>PRK05922 type III secretion system ATPase; Validated

Probab=96.49  E-value=0.0052  Score=52.26  Aligned_cols=58  Identities=19%  Similarity=0.273  Sum_probs=44.7

Q ss_pred             ChhhhhhhHHHHHHHhhcCCccHHHHHHHHhHHH----HHHHhhcCCCCCCCHHHHHHHHHHH
Q psy13777          1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVR----LTELLKQGQYVPMAIEEQVAVIYCG   59 (121)
Q Consensus         1 LkL~LAQyrELeaFaqFgSdLD~~Tk~~L~rG~r----l~elLKQ~q~~P~~~~eQv~~L~a~   59 (121)
                      +|..||+|+|+|.|.+||. .++.+...++++.+    |...|+|+..++.+.++-+--|..+
T Consensus       369 ~r~~l~~y~e~edli~~G~-y~~g~d~~~d~a~~~~~~i~~fl~Q~~~~~~~~~~~~~~l~~~  430 (434)
T PRK05922        369 LRSLLKAYHEALDIIQLGA-YVPGQDAHLDRAVKLLPSIKQFLSQPLSSYCALHNTLKQLEAL  430 (434)
T ss_pred             HHHHHHHHHHHHHHHHhcC-CCccCCHHHHHHHHhHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            4778999999999999998 77777777888888    6677777777777776655544443

>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi

Probab=83.51  E-value=3.3  Score=25.95  Aligned_cols=44  Identities=30%  Similarity=0.474  Sum_probs=35.3

Q ss_pred             HHHHHhhcCC--------CCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHH
Q psy13777         34 RLTELLKQGQ--------YVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEK   77 (121)
Q Consensus        34 rl~elLKQ~q--------~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~   77 (121)
                      +++++.++.+        |+|+.+++-...|-+...|+.+.++...+.+|..
T Consensus         4 ~lt~~I~~~p~l~ekIL~YePI~L~el~~~L~~~g~~~~~~~~~~~l~~~lD   55 (64)
T PF09494_consen    4 ALTKLIRSDPELYEKILMYEPINLEELHAWLKASGIGFDRKVDPSKLKEWLD   55 (64)
T ss_pred             HHHHHHHcCHHHHHHHHcCCCccHHHHHHHHHHcCCCccceeCHHHHHHHHH
Confidence            4555555554        9999999999888877788899999999887754

Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	121
2w6e_A	553	Low Resolution Structures Of Bovine Mitochondrial F		2e-50
2jiz_A	510	The Structure Of F1-Atpase Inhibited By Resveratrol		3e-50
2f43_A	510	Rat Liver F1-atpase Length = 510		4e-50
2xnd_A	492	Crystal Structure Of Bovine F1-C8 Sub-Complex Of At		5e-50
1bmf_A	510	Bovine Mitochondrial F1-Atpase Length = 510		5e-50
1cow_A	510	Bovine Mitochondrial F1-Atpase Complexed With Aurov		5e-50
1mab_A	510	Rat Liver F1-Atpase Length = 510		6e-50
1ohh_B	487	Bovine Mitochondrial F1-Atpase Complexed With The I		1e-42
2xok_A	545	Refined Structure Of Yeast F1c10 Atpase Complex To		3e-33
2hld_A	510	Crystal Structure Of Yeast Mitochondrial F1-Atpase		3e-33
3ofn_A	510	Structure Of Four Mutant Forms Of Yeast F1 Atpase:		3e-33
4b2q_A	485	Model Of The Yeast F1fo-Atp Synthase Dimer Based On		4e-33
4b2q_B	486	Model Of The Yeast F1fo-Atp Synthase Dimer Based On		4e-33
3oee_A	510	Structure Of Four Mutant Forms Of Yeast F1 Atpase:		3e-32
2r9v_A	515	Crystal Structure Of Atp Synthase Subunit Alpha (Tm		3e-25
2qe7_A	502	Crystal Structure Of The F1-Atpase From The Thermoa		1e-22
3oaa_A	513	Structure Of The E.Coli F1-Atp Synthase Inhibited B		3e-22
1fx0_A	507	Crystal Structure Of The Chloroplast F1-Atpase From		4e-21
1sky_B	502	Crystal Structure Of The Nucleotide Free Alpha3beta		3e-19

>pdb|2W6E|A Chain A, Low Resolution Structures Of Bovine Mitochondrial F1-Atpase During Controlled Dehydration: Hydration State 1. Length = 553

Iteration: 1
 Score =  193 bits (490), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 92/119 (77%), Positives = 105/119 (88%)
Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           MKLELAQYREVAAFAQFGSDLDAATQQLL+RGVRLTELLKQGQY PMAIEEQVAVIY GV
Sbjct: 433 MKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGV 492
Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
           RG+LDKL+P+KIT FE  FL+H+ S  + LL  I+ +GKI+E++DAKLK +VTNFLA F
Sbjct: 493 RGYLDKLEPSKITKFENAFLSHVISQHQALLSKIRTDGKISEESDAKLKEIVTNFLAGF 551

>pdb|2JIZ|A Chain A, The Structure Of F1-Atpase Inhibited By Resveratrol. Length = 510

Iteration: 1
 Score =  192 bits (489), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 92/119 (77%), Positives = 105/119 (88%)
Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           MKLELAQYREVAAFAQFGSDLDAATQQLL+RGVRLTELLKQGQY PMAIEEQVAVIY GV
Sbjct: 390 MKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGV 449
Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
           RG+LDKL+P+KIT FE  FL+H+ S  + LL  I+ +GKI+E++DAKLK +VTNFLA F
Sbjct: 450 RGYLDKLEPSKITKFENAFLSHVISQHQALLSKIRTDGKISEESDAKLKEIVTNFLAGF 508

>pdb|2F43|A Chain A, Rat Liver F1-atpase Length = 510

Iteration: 1
 Score =  192 bits (488), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 92/119 (77%), Positives = 105/119 (88%)
Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           MKLELAQYREVAAFAQFGSDLDAATQQLL+RGVRLTELLKQGQY PMAIEEQVAVIY GV
Sbjct: 390 MKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGV 449
Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
           RG+LDKL+P+KIT FE  FL+H+ S  + LL +I+ +GKI+E +DAKLK +VTNFLA F
Sbjct: 450 RGYLDKLEPSKITKFESAFLSHVVSQHQSLLGNIRSDGKISEQSDAKLKEIVTNFLAGF 508

>pdb|2XND|A Chain A, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp Synthase Length = 492

Iteration: 1
 Score =  192 bits (487), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 92/119 (77%), Positives = 105/119 (88%)
Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           MKLELAQYREVAAFAQFGSDLDAATQQLL+RGVRLTELLKQGQY PMAIEEQVAVIY GV
Sbjct: 372 MKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGV 431
Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
           RG+LDKL+P+KIT FE  FL+H+ S  + LL  I+ +GKI+E++DAKLK +VTNFLA F
Sbjct: 432 RGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAGF 490

>pdb|1BMF|A Chain A, Bovine Mitochondrial F1-Atpase Length = 510

Iteration: 1
 Score =  192 bits (487), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 92/119 (77%), Positives = 105/119 (88%)
Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           MKLELAQYREVAAFAQFGSDLDAATQQLL+RGVRLTELLKQGQY PMAIEEQVAVIY GV
Sbjct: 390 MKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGV 449
Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
           RG+LDKL+P+KIT FE  FL+H+ S  + LL  I+ +GKI+E++DAKLK +VTNFLA F
Sbjct: 450 RGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAGF 508

>pdb|1COW|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B Length = 510

Iteration: 1
 Score =  192 bits (487), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 92/119 (77%), Positives = 105/119 (88%)
Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           MKLELAQYREVAAFAQFGSDLDAATQQLL+RGVRLTELLKQGQY PMAIEEQVAVIY GV
Sbjct: 390 MKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGV 449
Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
           RG+LDKL+P+KIT FE  FL+H+ S  + LL  I+ +GKI+E++DAKLK +VTNFLA F
Sbjct: 450 RGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAGF 508

>pdb|1MAB|A Chain A, Rat Liver F1-Atpase Length = 510

Iteration: 1
 Score =  192 bits (487), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 92/119 (77%), Positives = 105/119 (88%)
Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           MKLELAQYREVAAFAQFGSDLDAATQQLL+RGVRLTELLKQGQY PMAIEEQVAVIY GV
Sbjct: 390 MKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGV 449
Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
           RG+LDKL+P+KIT FE  FL+H+ S  + LL +I+ +GKI+E +DAKLK +VTNFLA F
Sbjct: 450 RGYLDKLEPSKITKFESAFLSHVVSQHQSLLGNIRTDGKISEQSDAKLKEIVTNFLAGF 508

>pdb|1OHH|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The Inhibitor Protein If1 Length = 487

Iteration: 1
 Score =  167 bits (423), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 84/119 (70%), Positives = 97/119 (81%), Gaps = 8/119 (6%)
Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           MKLELAQYREVA        LDAATQQLL+RGVRLTELLKQGQY PMAIEEQVAVIY GV
Sbjct: 367 MKLELAQYREVA--------LDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGV 418
Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
           RG+LDKL+P+KIT FE  FL+H+ S  + LL  I+ +GKI+E++DAKLK +VTNFLA F
Sbjct: 419 RGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAGF 477

>pdb|2XOK|A Chain A, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A Resolution Length = 545

Iteration: 1
 Score =  136 bits (342), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 66/119 (55%), Positives = 91/119 (76%)
Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           +KL LAQYREVAAFAQFGSDLDA+T+Q L RG RLT+LLKQ QY P+A EEQV +IY GV
Sbjct: 427 LKLFLAQYREVAAFAQFGSDLDASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGV 486
Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
            GHLD ++ ++I  FE  FL+++KS+   LL  I+++G+++++  A LK+   +F+A F
Sbjct: 487 NGHLDGIELSRIGEFESSFLSYLKSNHNELLTEIREKGELSKELLASLKSATESFVATF 545

>pdb|2HLD|A Chain A, Crystal Structure Of Yeast Mitochondrial F1-Atpase Length = 510

Iteration: 1
 Score =  136 bits (342), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 66/119 (55%), Positives = 91/119 (76%)
Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           +KL LAQYREVAAFAQFGSDLDA+T+Q L RG RLT+LLKQ QY P+A EEQV +IY GV
Sbjct: 392 LKLFLAQYREVAAFAQFGSDLDASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGV 451
Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
            GHLD ++ ++I  FE  FL+++KS+   LL  I+++G+++++  A LK+   +F+A F
Sbjct: 452 NGHLDGIELSRIGEFESSFLSYLKSNHNELLTEIREKGELSKELLASLKSATESFVATF 510

>pdb|3OFN|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase: Alpha-N67i Length = 510

Iteration: 1
 Score =  136 bits (342), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 66/119 (55%), Positives = 91/119 (76%)
Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           +KL LAQYREVAAFAQFGSDLDA+T+Q L RG RLT+LLKQ QY P+A EEQV +IY GV
Sbjct: 392 LKLFLAQYREVAAFAQFGSDLDASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGV 451
Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
            GHLD ++ ++I  FE  FL+++KS+   LL  I+++G+++++  A LK+   +F+A F
Sbjct: 452 NGHLDGIELSRIGEFESSFLSYLKSNHNELLTEIREKGELSKELLASLKSATESFVATF 510

>pdb|4B2Q|A Chain A, Model Of The Yeast F1fo-Atp Synthase Dimer Based On Subtomogram Average Length = 485

Iteration: 1
 Score =  135 bits (341), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 66/119 (55%), Positives = 91/119 (76%)
Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           +KL LAQYREVAAFAQFGSDLDA+T+Q L RG RLT+LLKQ QY P+A EEQV +IY GV
Sbjct: 367 LKLFLAQYREVAAFAQFGSDLDASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGV 426
Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
            GHLD ++ ++I  FE  FL+++KS+   LL  I+++G+++++  A LK+   +F+A F
Sbjct: 427 NGHLDGIELSRIGEFESSFLSYLKSNHNELLTEIREKGELSKELLASLKSATESFVATF 485

>pdb|4B2Q|B Chain B, Model Of The Yeast F1fo-Atp Synthase Dimer Based On Subtomogram Average Length = 486

Iteration: 1
 Score =  135 bits (341), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 66/119 (55%), Positives = 91/119 (76%)
Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           +KL LAQYREVAAFAQFGSDLDA+T+Q L RG RLT+LLKQ QY P+A EEQV +IY GV
Sbjct: 368 LKLFLAQYREVAAFAQFGSDLDASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGV 427
Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
            GHLD ++ ++I  FE  FL+++KS+   LL  I+++G+++++  A LK+   +F+A F
Sbjct: 428 NGHLDGIELSRIGEFESSFLSYLKSNHNELLTEIREKGELSKELLASLKSATESFVATF 486

>pdb|3OEE|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase: Alpha-F405s Length = 510

Iteration: 1
 Score =  132 bits (333), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 65/119 (54%), Positives = 90/119 (75%)
Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           +KL LAQYREVAA AQFGSDLDA+T+Q L RG RLT+LLKQ QY P+A EEQV +IY GV
Sbjct: 392 LKLFLAQYREVAASAQFGSDLDASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGV 451
Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
            GHLD ++ ++I  FE  FL+++KS+   LL  I+++G+++++  A LK+   +F+A F
Sbjct: 452 NGHLDGIELSRIGEFESSFLSYLKSNHNELLTEIREKGELSKELLASLKSATESFVATF 510

>pdb|2R9V|A Chain A, Crystal Structure Of Atp Synthase Subunit Alpha (Tm1612) From Thermotoga Maritima At 2.10 A Resolution Length = 515

Iteration: 1
 Score =  109 bits (273), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/119 (45%), Positives = 78/119 (65%)
Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           ++++LAQYRE+  FAQF ++LD AT+  + RG RL ELLKQ QY P  +EEQV V++ GV
Sbjct: 395 LRIDLAQYRELETFAQFATELDPATRAQIIRGQRLXELLKQEQYSPXPVEEQVVVLFAGV 454
Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
           RG+LD L   ++  FEKEFL       + +L+ IK + ++T +T+ KLK  +  F   F
Sbjct: 455 RGYLDDLPVEEVRRFEKEFLRFXHEKHQDILDDIKTKKELTSETEEKLKKAIEEFKTTF 513

>pdb|2QE7|A Chain A, Crystal Structure Of The F1-Atpase From The Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1 Length = 502

Iteration: 1
 Score =  101 bits (251), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/120 (42%), Positives = 77/120 (64%), Gaps = 2/120 (1%)
Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           ++L+LAQYRE+ AFAQFGSDLD ATQ  LNRG R  E+LKQ ++ PM +EEQV  IY   
Sbjct: 382 LRLDLAQYRELQAFAQFGSDLDKATQAKLNRGERTVEILKQDEHKPMPVEEQVISIYAVT 441
Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT 120
            G +D +    +  FE+E L+ +++++  LL+ I++ G++ +  +  L   +  F   FT
Sbjct: 442 NGFMDDIPVEDVRRFEEELLSFMRANKDSLLDHIRQTGELPDTKE--LDAAIEEFKKGFT 499

>pdb|3OAA|A Chain A, Structure Of The E.Coli F1-Atp Synthase Inhibited By Subunit Epsilon Length = 513

Iteration: 1
 Score =  100 bits (248), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 48/117 (41%), Positives = 78/117 (66%)
Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           ++  LAQYRE+AAF+QF SDLD AT++ L+ G ++TELLKQ QY PM++ +Q  V++   
Sbjct: 393 IRTALAQYRELAAFSQFASDLDDATRKQLDHGQKVTELLKQKQYAPMSVAQQSLVLFAAE 452
Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLA 117
           RG+L  ++ +KI +FE   LA++      L++ I + G   ++ + KLK ++ +F A
Sbjct: 453 RGYLADVELSKIGSFEAALLAYVDRDHAPLMQEINQTGGYNDEIEGKLKGILDSFKA 509

>pdb|1FX0|A Chain A, Crystal Structure Of The Chloroplast F1-Atpase From Spinach Length = 507

Iteration: 1
 Score = 96.3 bits (238), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 52/119 (43%), Positives = 71/119 (59%)
Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           +KLELAQ+ E+ AFAQF SDLD ATQ  L RG RL ELLKQ Q  P+ +EEQV  IY G 
Sbjct: 383 LKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQPQSAPLTVEEQVMTIYTGT 442
Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
            G+LD L+  ++  +  E   ++K+++    E I      TE+ +A LK  +   +  F
Sbjct: 443 NGYLDSLELDQVRKYLVELRTYVKTNKPEFQEIISSTKTFTEEAEALLKEAIQEQMERF 501

>pdb|1SKY|B Chain B, Crystal Structure Of The Nucleotide Free Alpha3beta3 Sub-Complex Of F1-Atpase From The Thermophilic Bacillus Ps3 Length = 502

Iteration: 1
 Score = 90.1 bits (222), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 65/105 (61%)
Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           ++L+LA YRE+ AFAQFGSDLD ATQ  + RG R  E+LKQ  + P+ +E+QV +IY   
Sbjct: 382 LRLDLAAYRELEAFAQFGSDLDKATQANVARGARTVEVLKQDLHQPIPVEKQVLIIYALT 441
Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTD 105
           RG LD +    +  FEKEF   +  + + LLE I+    +  + D
Sbjct: 442 RGFLDDIPVEDVRRFEKEFYLWLDQNGQHLLEHIRTTKDLPNEDD 486

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	121
3oaa_A	513	ATP synthase subunit alpha; rossmann fold, hydrola	6e-62
2ck3_A	510	ATP synthase subunit alpha\, mitochondrial; hydrol	1e-61
2r9v_A	515	ATP synthase subunit alpha; TM1612, structural gen	8e-61
1fx0_A	507	ATP synthase alpha chain; latent ATPase, thermal s	2e-60
2qe7_A	502	ATP synthase subunit alpha; blockage of ATP hydrol	7e-58

>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A Length = 513

 Score =  195 bits (499), Expect = 6e-62
 Identities = 48/120 (40%), Positives = 79/120 (65%)

Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           ++  LAQYRE+AAF+QF SDLD AT++ L+ G ++TELLKQ QY PM++ +Q  V++   
Sbjct: 393 IRTALAQYRELAAFSQFASDLDDATRKQLDHGQKVTELLKQKQYAPMSVAQQSLVLFAAE 452

Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT 120
           RG+L  ++ +KI +FE   LA++      L++ I + G   ++ + KLK ++ +F A  +
Sbjct: 453 RGYLADVELSKIGSFEAALLAYVDRDHAPLMQEINQTGGYNDEIEGKLKGILDSFKATQS 512

>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ... Length = 510

 Score =  194 bits (496), Expect = 1e-61
 Identities = 92/120 (76%), Positives = 105/120 (87%)

Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           MKLELAQYREVAAFAQFGSDLDAATQQLL+RGVRLTELLKQGQY PMAIEEQVAVIY GV
Sbjct: 390 MKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGV 449

Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT 120
           RG+LDKL+P+KIT FE  FL+H+ S  + LL  I+ +GKI+E++DAKLK +VTNFLA F 
Sbjct: 450 RGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAGFE 509

>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8} Length = 515

 Score =  193 bits (492), Expect = 8e-61
 Identities = 55/119 (46%), Positives = 80/119 (67%)

Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           ++++LAQYRE+  FAQF ++LD AT+  + RG RL ELLKQ QY PM +EEQV V++ GV
Sbjct: 395 LRIDLAQYRELETFAQFATELDPATRAQIIRGQRLMELLKQEQYSPMPVEEQVVVLFAGV 454

Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
           RG+LD L   ++  FEKEFL  +    + +L+ IK + ++T +T+ KLK  +  F   F
Sbjct: 455 RGYLDDLPVEEVRRFEKEFLRFMHEKHQDILDDIKTKKELTSETEEKLKKAIEEFKTTF 513

>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A* Length = 507

 Score =  192 bits (489), Expect = 2e-60
 Identities = 52/120 (43%), Positives = 71/120 (59%)

Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           +KLELAQ+ E+ AFAQF SDLD ATQ  L RG RL ELLKQ Q  P+ +EEQV  IY G 
Sbjct: 383 LKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQPQSAPLTVEEQVMTIYTGT 442

Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT 120
            G+LD L+  ++  +  E   ++K+++    E I      TE+ +A LK  +   +  F 
Sbjct: 443 NGYLDSLELDQVRKYLVELRTYVKTNKPEFQEIISSTKTFTEEAEALLKEAIQEQMERFL 502

>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B Length = 502

 Score =  185 bits (471), Expect = 7e-58
 Identities = 51/120 (42%), Positives = 77/120 (64%), Gaps = 2/120 (1%)

Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           ++L+LAQYRE+ AFAQFGSDLD ATQ  LNRG R  E+LKQ ++ PM +EEQV  IY   
Sbjct: 382 LRLDLAQYRELQAFAQFGSDLDKATQAKLNRGERTVEILKQDEHKPMPVEEQVISIYAVT 441

Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT 120
            G +D +    +  FE+E L+ +++++  LL+ I++ G++ +    +L   +  F   FT
Sbjct: 442 NGFMDDIPVEDVRRFEEELLSFMRANKDSLLDHIRQTGELPD--TKELDAAIEEFKKGFT 499

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	121
3oaa_A	513	ATP synthase subunit alpha; rossmann fold, hydrola	99.97
2r9v_A	515	ATP synthase subunit alpha; TM1612, structural gen	99.95
1fx0_A	507	ATP synthase alpha chain; latent ATPase, thermal s	99.95
2ck3_A	510	ATP synthase subunit alpha\, mitochondrial; hydrol	99.94
2qe7_A	502	ATP synthase subunit alpha; blockage of ATP hydrol	99.92
2c61_A	469	A-type ATP synthase non-catalytic subunit B; hydro	99.09
3vr4_D	465	V-type sodium ATPase subunit D; V-ATPase, rotary m	98.88
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	98.71
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	98.57
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	98.51
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	98.51
3gqb_B	464	V-type ATP synthase beta chain; A3B3, V-ATPase, AT	98.49
1fx0_B	498	ATP synthase beta chain; latent ATPase, thermal st	98.46
3vr4_A	600	V-type sodium ATPase catalytic subunit A; V-ATPase	98.1
3mfy_A	588	V-type ATP synthase alpha chain; A-type ATP syntha	97.85
3gqb_A	578	V-type ATP synthase alpha chain; A3B3, V-ATPase, A	97.61
1cg5_B	141	Protein (hemoglobin); oxygen transport; HET: HEM;	80.74

>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A

Probab=99.97  E-value=3.3e-30  Score=217.80  Aligned_cols=121  Identities=40%  Similarity=0.658  Sum_probs=116.7

Q ss_pred             ChhhhhhhHHHHHHHhhcCCccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHH
Q psy13777          1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFL   80 (121)
Q Consensus         1 LkL~LAQyrELeaFaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~   80 (121)
                      +|..||||+||++|++||+|||++|+.+|+||+||+++|||++|+|+++++|+++|||+++||+|+||+++|..|+.+++
T Consensus       393 lr~~la~y~el~~~~~~g~~ld~~~~~~l~~~~~i~~fL~Q~~~~~~~~~e~~~~l~a~~~g~ld~~~~~~~~~~~~~~~  472 (513)
T 3oaa_A          393 IRTALAQYRELAAFSQFASDLDDATRKQLDHGQKVTELLKQKQYAPMSVAQQSLVLFAAERGYLADVELSKIGSFEAALL  472 (513)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHTCCCSSCCCCTTHHHHHHHHHHSCTTTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCCCccCCHHHHHHHHHHHH
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhchhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhccC
Q psy13777         81 AHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFTG  121 (121)
Q Consensus        81 ~~l~~~~~~~~~~i~~~~~l~~~~~~~l~~~~~~~~~~f~~  121 (121)
                      +|+++++|++++.|+.++.+++++++.|++++++|++...|
T Consensus       473 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~  513 (513)
T 3oaa_A          473 AYVDRDHAPLMQEINQTGGYNDEIEGKLKGILDSFKATQSW  513 (513)
T ss_dssp             HHHTGGGCHHHHHHHHHCCCCHHHHHHHHHHHHHHTTCC--
T ss_pred             HHHHhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCC
Confidence            99999999999999999999999999999999999887655

>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}

Probab=99.95  E-value=4.3e-27  Score=198.96  Aligned_cols=120  Identities=46%  Similarity=0.796  Sum_probs=117.4

Q ss_pred             ChhhhhhhHHHHHHHhhcCCccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHH
Q psy13777          1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFL   80 (121)
Q Consensus         1 LkL~LAQyrELeaFaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~   80 (121)
                      +|..||||+|+++|++||+|||++++.++++|++|+++|+|++|+|+++++|+..||++.+|++|++|+++|..|+..++
T Consensus       395 lr~~la~y~el~~~~~~G~~l~~~~~~~l~~~~~i~~fL~Q~~~~~~~~~e~~~~l~~~~~g~ld~i~~~~i~~~~~~~~  474 (515)
T 2r9v_A          395 LRIDLAQYRELETFAQFATELDPATRAQIIRGQRLMELLKQEQYSPMPVEEQVVVLFAGVRGYLDDLPVEEVRRFEKEFL  474 (515)
T ss_dssp             HHHHHHHHHHHHTTGGGCSCCCHHHHHHHHHHHHHHHHTCCCTTCCCCHHHHHHHHHHHHTTTTTTSCGGGHHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhhhccccHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhchhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcc
Q psy13777         81 AHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT  120 (121)
Q Consensus        81 ~~l~~~~~~~~~~i~~~~~l~~~~~~~l~~~~~~~~~~f~  120 (121)
                      +|+++++|++++.|..++.++++.++.|++++++|++.|.
T Consensus       475 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~  514 (515)
T 2r9v_A          475 RFMHEKHQDILDDIKTKKELTSETEEKLKKAIEEFKTTFR  514 (515)
T ss_dssp             HHHHHHCHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999998774

>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*

Probab=99.95  E-value=3.7e-27  Score=199.16  Aligned_cols=121  Identities=43%  Similarity=0.618  Sum_probs=117.0

Q ss_pred             ChhhhhhhHHHHHHHhhcCCccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHH
Q psy13777          1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFL   80 (121)
Q Consensus         1 LkL~LAQyrELeaFaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~   80 (121)
                      +|..||||+|+++|++||+|||++++.+++||+||+++|||++|+|+++++|+..+|++.+|++|++|+++|..|+..++
T Consensus       383 lr~~la~y~el~~~~~~G~~l~~~~~~~l~~~~~i~~fL~Q~~~~~~~~~e~~~~l~~~~~g~l~~i~~~~i~~~~~~~~  462 (507)
T 1fx0_A          383 LKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQPQSAPLTVEEQVMTIYTGTNGYLDSLELDQVRKYLVELR  462 (507)
T ss_dssp             HHHHHHHHHHHTTTGGGCSSCCHHHHHHHHHHHHHHHHHCCCTTCCCCHHHHHHHHHHHHTTSSSSSCHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhhchhcCCCHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhchhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhccC
Q psy13777         81 AHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFTG  121 (121)
Q Consensus        81 ~~l~~~~~~~~~~i~~~~~l~~~~~~~l~~~~~~~~~~f~~  121 (121)
                      +|+++++|++++.|..++.++++.++.|++++++|++.|.|
T Consensus       463 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~  503 (507)
T 1fx0_A          463 TYVKTNKPEFQEIISSTKTFTEEAEALLKEAIQEQMERFLL  503 (507)
T ss_dssp             HHHHHTCHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC--
T ss_pred             HHHHhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999988743

>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...

Probab=99.94  E-value=3.7e-27  Score=199.30  Aligned_cols=120  Identities=77%  Similarity=1.118  Sum_probs=117.4

Q ss_pred             ChhhhhhhHHHHHHHhhcCCccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHH
Q psy13777          1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFL   80 (121)
Q Consensus         1 LkL~LAQyrELeaFaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~   80 (121)
                      +|..||||+|+++|++||+|||++++.+++||++|+++|+|++|+|+++++|+..||++.+|++|++|+++|..|+..++
T Consensus       390 lr~~la~y~el~~~~~~G~~l~~~~~~~l~~~~~i~~fL~Q~~~~~~~~~~~~~~l~~~~~g~l~~i~~~~i~~~~~~~~  469 (510)
T 2ck3_A          390 MKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFL  469 (510)
T ss_dssp             HHHHHHHHHHHGGGSSSCSSSCHHHHHHHHHHHHHHHTTCCCSSCCCCHHHHHHHHHHHHTTSSTTSCGGGHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHH
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhchhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcc
Q psy13777         81 AHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT  120 (121)
Q Consensus        81 ~~l~~~~~~~~~~i~~~~~l~~~~~~~l~~~~~~~~~~f~  120 (121)
                      +|+++++|++++.|..++.++++.++.|++++++|++.|.
T Consensus       470 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~  509 (510)
T 2ck3_A          470 SHVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAGFE  509 (510)
T ss_dssp             HHHHHHCHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999998774

>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B

Probab=99.92  E-value=2.7e-26  Score=193.76  Aligned_cols=117  Identities=43%  Similarity=0.744  Sum_probs=113.6

Q ss_pred             ChhhhhhhHHHHHHHhhcCCccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHH
Q psy13777          1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFL   80 (121)
Q Consensus         1 LkL~LAQyrELeaFaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~   80 (121)
                      +|..||||+|+++|++||+|||++++.+++||++|+++|+|++|+|+++++|+..||++.+|++|++|+++|..|++.++
T Consensus       382 lr~~la~y~el~~~~~~G~~l~~~~~~~l~~~~~i~~fL~Q~~~~~~~~~~~~~~l~~~~~g~l~~i~~~~i~~~~~~~~  461 (502)
T 2qe7_A          382 LRLDLAQYRELQAFAQFGSDLDKATQAKLNRGERTVEILKQDEHKPMPVEEQVISIYAVTNGFMDDIPVEDVRRFEEELL  461 (502)
T ss_dssp             HHHHHHHHHHGGGSTTCCCCTTTTTTTTHHHHHHHHHHHCCCTTCCCCHHHHHHHHHHHHTTTTTSSCSTTHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhchhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc
Q psy13777         81 AHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF  119 (121)
Q Consensus        81 ~~l~~~~~~~~~~i~~~~~l~~~~~~~l~~~~~~~~~~f  119 (121)
                      +|+++++|++++.|..++.++++  +.|++++++|++.|
T Consensus       462 ~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~  498 (502)
T 2qe7_A          462 SFMRANKDSLLDHIRQTGELPDT--KELDAAIEEFKKGF  498 (502)
T ss_dssp             HHHHHTTHHHHHHHHSSCCCCCT--THHHHHHHTTCSCS
T ss_pred             HHHHhhhHHHHHHHHhcCCCCHH--HHHHHHHHHHHHhh
Confidence            99999999999999999999999  99999999987766

>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*

Probab=99.09  E-value=5.9e-11  Score=99.61  Aligned_cols=80  Identities=14%  Similarity=0.260  Sum_probs=74.9

Q ss_pred             ChhhhhhhHHHHHHHhhc--CCccHHHHHHHHhHHHHHH-HhhcCCCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHH
Q psy13777          1 MKLELAQYREVAAFAQFG--SDLDAATQQLLNRGVRLTE-LLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEK   77 (121)
Q Consensus         1 LkL~LAQyrELeaFaqFg--SdLD~~Tk~~L~rG~rl~e-lLKQ~q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~   77 (121)
                      ++..|+||+||+.|.+|+  ++|++.++..+++|++|.+ .|+|+.|+|+++++++..+|++    ++.+|.+.+..+..
T Consensus       380 l~~~l~~~~eL~~i~~~~G~~~l~d~~~~~l~~~~~i~~~fL~Q~~~~~~~~~et~~~l~~~----l~~~~~~~~~~~~~  455 (469)
T 2c61_A          380 MYAGYAEGRDLRGLVAIVGKEALSERDTKFLEFADLFEDKFVRQGRNENRTIEDTLEIGWQI----LTHLPENQLGRIDN  455 (469)
T ss_dssp             HHHHHHHHHHHHHHHHHHCGGGSCHHHHHHHHHHHHHHHHTTCCCTTCCCCHHHHHHHHHHH----HTTSCGGGCTTSCH
T ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH----HHhCCHHHHHHHHH
Confidence            367899999999999997  7999999999999999997 9999999999999999999994    78999999999999


Q ss_pred             HHHHHHH
Q psy13777         78 EFLAHIK   84 (121)
Q Consensus        78 ~l~~~l~   84 (121)
                      ++++++.
T Consensus       456 ~~~~~~~  462 (469)
T 2c61_A          456 KYIQKYH  462 (469)
T ss_dssp             HHHHHHS
T ss_pred             HHHHHHh
Confidence            9998874

>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*

Probab=98.88  E-value=1.1e-09  Score=91.94  Aligned_cols=77  Identities=19%  Similarity=0.234  Sum_probs=71.3

Q ss_pred             ChhhhhhhHHHHHHHhhc--CCccHHHHHHHHhHHHH-HHHhhcCCCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHH
Q psy13777          1 MKLELAQYREVAAFAQFG--SDLDAATQQLLNRGVRL-TELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEK   77 (121)
Q Consensus         1 LkL~LAQyrELeaFaqFg--SdLD~~Tk~~L~rG~rl-~elLKQ~q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~   77 (121)
                      +|..|++|+||+.|.+++  ++|++.++..+.+|+++ .+.|+|+.++|.+.++++.++++    +++.+|.+.+.+|+.
T Consensus       379 l~~~~~~~~el~~i~~~~G~d~L~~~d~~~~~~~~~~~~~fL~Q~~~e~~~~~~~~~~l~~----~l~~~p~~~~~~~~~  454 (465)
T 3vr4_D          379 LFAAYAQGKQAKELAVVLGESALSDIDKIYAKFAERFENEYVNQGFYTNRTITETLDLGWE----LLAMLPRTELKRIKD  454 (465)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHTTCCCTTCCCCHHHHHHHHHH----HHTTSCTTTCTTSCH
T ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhHHHHHHHhCCCCCCCCCHHHHHHHHHH----HHhhCCHHHHHHHHH
Confidence            367899999999999996  68999999999999998 79999999999999999999998    678999999999999


Q ss_pred             HHHH
Q psy13777         78 EFLA   81 (121)
Q Consensus        78 ~l~~   81 (121)
                      ++++
T Consensus       455 ~~~~  458 (465)
T 3vr4_D          455 DLLD  458 (465)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8876

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=98.71  E-value=9.3e-09  Score=82.61  Aligned_cols=59  Identities=12%  Similarity=0.222  Sum_probs=55.8

Q ss_pred             ChhhhhhhHHHHHHHhhcC---CccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q psy13777          1 MKLELAQYREVAAFAQFGS---DLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCG   59 (121)
Q Consensus         1 LkL~LAQyrELeaFaqFgS---dLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~   59 (121)
                      +|..||+|+|++.|.+||+   +.|+.|+..+++|+++.+.|+|+.++|+++++|+..+..+
T Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~Q~~~~~~~~~~~~~~~~~~  345 (347)
T 2obl_A          284 CKKLIATYKNPELLIRIGEYTMGQDPEADKAIKNRKLIQNFIQQSTKDISSYEKTIESLFKV  345 (347)
T ss_dssp             HHHHHHHCCCTHHHHTTTCCCCCSCHHHHHHHHTHHHHHHHHCCCTTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            3678999999999999998   9999999999999999999999999999999999998875

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=98.57  E-value=1.2e-07  Score=79.77  Aligned_cols=71  Identities=18%  Similarity=0.280  Sum_probs=64.0

Q ss_pred             ChhhhhhhHHHHHH-HhhcCC-ccHHHHHHHHhHHHHHHHhhcCCC----------CCCCHHHHHHHHHHHhhCCCCCCC
Q psy13777          1 MKLELAQYREVAAF-AQFGSD-LDAATQQLLNRGVRLTELLKQGQY----------VPMAIEEQVAVIYCGVRGHLDKLD   68 (121)
Q Consensus         1 LkL~LAQyrELeaF-aqFgSd-LD~~Tk~~L~rG~rl~elLKQ~q~----------~P~~~~eQv~~L~a~~~g~ld~i~   68 (121)
                      +|..||+|+|++.+ +.+|+| |++.++..+++|++|.+.|+|+.|          .+.+.++-+--|..+.+|-.|++|
T Consensus       378 lr~~la~y~el~~li~i~G~~~l~~~d~~~l~~~~~i~~fL~Q~~~v~~~f~~~~g~~~~~~~t~~~l~~il~g~~d~~p  457 (482)
T 2ck3_D          378 VQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLP  457 (482)
T ss_dssp             HHHHHHHHHHHHHHHHHHCGGGSCHHHHHHHHHHHHHHHHTCCCCGGGHHHHSSCCCCCCHHHHHHHHHHHHTTTTTTSC
T ss_pred             HHHHHHhhhHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHcCCchHHHHhhcCccccCCHHHHHHHHHHHhcccccCCC
Confidence            47789999999997 789986 999999999999999999999965          888999999999999899999998


Q ss_pred             hhH
Q psy13777         69 PAK   71 (121)
Q Consensus        69 ~~~   71 (121)
                      ...
T Consensus       458 e~~  460 (482)
T 2ck3_D          458 EQA  460 (482)
T ss_dssp             GGG
T ss_pred             HHH
Confidence            864

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=98.51  E-value=2.5e-07  Score=77.70  Aligned_cols=71  Identities=21%  Similarity=0.331  Sum_probs=64.6

Q ss_pred             ChhhhhhhHHHHH-HHhhcC-CccHHHHHHHHhHHHHHHHhhcCCC----------CCCCHHHHHHHHHHHhhCCCCCCC
Q psy13777          1 MKLELAQYREVAA-FAQFGS-DLDAATQQLLNRGVRLTELLKQGQY----------VPMAIEEQVAVIYCGVRGHLDKLD   68 (121)
Q Consensus         1 LkL~LAQyrELea-FaqFgS-dLD~~Tk~~L~rG~rl~elLKQ~q~----------~P~~~~eQv~~L~a~~~g~ld~i~   68 (121)
                      +|..||+|+|++. |+.+|. +|++.++..+++|++|.+.|+|+.+          ...+.++.+-.|..+-+|-+|++|
T Consensus       370 lr~~la~y~e~~~li~i~g~~~ls~~d~~~l~~~~~i~~fL~Q~~~~~~~~~~~~~~~~~~~~t~~~l~~i~~~~~~~~~  449 (473)
T 1sky_E          370 VQQTLERYKELQDIIAILGMDELSDEDKLVVHRARRIQFFLSQNFHVAEQFTGQPGSYVPVKETVRGFKEILEGKYDHLP  449 (473)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSTTCTTHHHHHHHHHHHHHHHTCBCCTTTHHHHSCCCCCCCHHHHHHHHHHHHTTTTTTSC
T ss_pred             HHHHHHhHHHHHHHHHhhCcccCCHHHHHHHHHHHHHHHHHcCCchHhhhhhccCCccCCHHHHHHHHHHHhcccccCCC
Confidence            4778999999999 799996 8999999999999999999999976          678999999999999999999998


Q ss_pred             hhH
Q psy13777         69 PAK   71 (121)
Q Consensus        69 ~~~   71 (121)
                      .+.
T Consensus       450 ~~~  452 (473)
T 1sky_E          450 EDR  452 (473)
T ss_dssp             GGG
T ss_pred             HHH
Confidence            865

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=98.51  E-value=5.9e-08  Score=80.19  Aligned_cols=60  Identities=15%  Similarity=0.220  Sum_probs=56.4

Q ss_pred             ChhhhhhhHHHHHHHhhcC---CccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHh
Q psy13777          1 MKLELAQYREVAAFAQFGS---DLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV   60 (121)
Q Consensus         1 LkL~LAQyrELeaFaqFgS---dLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~~   60 (121)
                      +|..|++|+|++.|.+||+   ..|+.|+..+.+|+++.+.|+|+.++|++.++|+..|+.+-
T Consensus       373 l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~~~~~~fl~Q~~~~~~~~~~~~~~~~~~~  435 (438)
T 2dpy_A          373 FKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLWPQLEAFLQQGIFERADWEDSLQALDLIF  435 (438)
T ss_dssp             HHHHHHHHHHGGGTSSSSCCCTTSCHHHHHHHTTHHHHHHHHCCCTTCCCCHHHHHHHHHHHS
T ss_pred             HHHHHHhhHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence            3567999999999999998   89999999999999999999999999999999999999873

>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*

Probab=98.49  E-value=3.4e-08  Score=82.84  Aligned_cols=76  Identities=13%  Similarity=0.206  Sum_probs=64.9

Q ss_pred             ChhhhhhhHHHHHHHhhc--CCccHHHHHHHHhHHHH-HHHhhcCCCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHH
Q psy13777          1 MKLELAQYREVAAFAQFG--SDLDAATQQLLNRGVRL-TELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEK   77 (121)
Q Consensus         1 LkL~LAQyrELeaFaqFg--SdLD~~Tk~~L~rG~rl-~elLKQ~q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~   77 (121)
                      +|..|++|+||+.|.+++  ++|++.++..+.+|+++ .+.|+|+ ++|.+.++++..+|.+.    ..+|.+.+..+..
T Consensus       382 l~~~~~~~~el~~i~~~~G~d~L~~~d~~~~~~~~~~~~~fL~Q~-~e~~~~~~s~~~l~~ll----~~~p~~~~~~~~~  456 (464)
T 3gqb_B          382 LYSAYANGVDIRKLVAIIGEDALTENDRRYLQFADAFERFFINQG-QQNRSIEESLQIAWALL----SMLPQGELKRISK  456 (464)
T ss_dssp             HHHHHHHHHHHHHHTSSSCSCCCCSHHHHTTHHHHHHHHTTTCCT-TCCCCHHHHHHHHHHHH----TTSCGGGCTTSCH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhHHHHHHhcCCC-CCCCCHHHHHHHHHHHH----HhCCHHHHhcCCH
Confidence            467899999999999997  68999999999999998 5899999 99999999999999965    4567776666666


Q ss_pred             HHHH
Q psy13777         78 EFLA   81 (121)
Q Consensus        78 ~l~~   81 (121)
                      ++++
T Consensus       457 ~~~~  460 (464)
T 3gqb_B          457 DHIG  460 (464)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*

Probab=98.46  E-value=1.8e-07  Score=78.98  Aligned_cols=71  Identities=23%  Similarity=0.351  Sum_probs=65.0

Q ss_pred             ChhhhhhhHHHHHH-HhhcCC-ccHHHHHHHHhHHHHHHHhhcCCC----------CCCCHHHHHHHHHHHhhCCCCCCC
Q psy13777          1 MKLELAQYREVAAF-AQFGSD-LDAATQQLLNRGVRLTELLKQGQY----------VPMAIEEQVAVIYCGVRGHLDKLD   68 (121)
Q Consensus         1 LkL~LAQyrELeaF-aqFgSd-LD~~Tk~~L~rG~rl~elLKQ~q~----------~P~~~~eQv~~L~a~~~g~ld~i~   68 (121)
                      +|..||+|+|++.+ +.+|+| |++.++..+++|++|.+.|+|+.+          ...+.++-+-.+..+.+|-.|++|
T Consensus       391 lr~~la~y~el~~li~i~G~d~ls~~d~~~l~~~~~i~~fL~Q~~~v~e~ft~~~g~~v~~~~t~~~l~~il~g~~d~~p  470 (498)
T 1fx0_B          391 VKETLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDSLP  470 (498)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSTTSCTTTHHHHHHHHHHHHHTCCCCSSCTTTSCSCCCCCCHHHHHHHHHTTTTTTTSSSC
T ss_pred             HHHHHHhhHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHcCCchHHHHhhcCCCcccCHHHHHHHHHHHhcCcccCCC
Confidence            46789999999998 679987 999999999999999999999965          899999999999999999999999


Q ss_pred             hhH
Q psy13777         69 PAK   71 (121)
Q Consensus        69 ~~~   71 (121)
                      ...
T Consensus       471 e~~  473 (498)
T 1fx0_B          471 EQA  473 (498)
T ss_dssp             GGG
T ss_pred             HHH
Confidence            864

>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*

Probab=98.10  E-value=6.2e-06  Score=71.00  Aligned_cols=80  Identities=18%  Similarity=0.165  Sum_probs=64.2

Q ss_pred             hhhhhHHHHHHHh-hcCC-ccHHHHHHHHhHHHHHH-HhhcCCCCC----CCHHHHHHHHHHHh------hCCCC-CCCh
Q psy13777          4 ELAQYREVAAFAQ-FGSD-LDAATQQLLNRGVRLTE-LLKQGQYVP----MAIEEQVAVIYCGV------RGHLD-KLDP   69 (121)
Q Consensus         4 ~LAQyrELeaFaq-FgSd-LD~~Tk~~L~rG~rl~e-lLKQ~q~~P----~~~~eQv~~L~a~~------~g~ld-~i~~   69 (121)
                      -||+|+|++.+.+ +|.| |.+..+..+++|+++.+ .|+|+.|+|    .|+++|+.+|..+.      ..+++ .+|.
T Consensus       470 ~la~~~el~~ii~i~G~d~Ls~~dk~~l~~a~~i~e~fL~Q~~f~~~d~~~~~~kq~~~l~~i~~~~~~~~~~~~~~~~~  549 (600)
T 3vr4_A          470 ILQEEEQLNEIVRLVGIDSLSDNDRLTLEVAKSIREDYLQQNAFDDVDTFTSREKQFNMLKVILTFGKEARKALSLGAYF  549 (600)
T ss_dssp             HHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHHHHHHHTTCCCTTSTTTTCCCHHHHHHHHHHHHHHHHHHHHHHTTTCCH
T ss_pred             HHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHHHHhCCCCCcCCccccCCHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            5899999999999 7999 99999999999999985 999999998    89999997766542      22322 5889


Q ss_pred             hHHHHHHHHHHHHH
Q psy13777         70 AKITTFEKEFLAHI   83 (121)
Q Consensus        70 ~~v~~f~~~l~~~l   83 (121)
                      +.|..+...+...+
T Consensus       550 ~~i~~~~~~~~~~~  563 (600)
T 3vr4_A          550 NEIMEGTVAVRERI  563 (600)
T ss_dssp             HHHHHHCHHHHHHH
T ss_pred             HHHHHHhHHHHHHH
Confidence            98887644444433

>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A

Probab=97.85  E-value=3.4e-05  Score=66.26  Aligned_cols=71  Identities=18%  Similarity=0.254  Sum_probs=59.2

Q ss_pred             hhhhhHHHHHHHh-hcCC-ccHHHHHHHHhHHHHH-HHhhcCCCCCC----CHHHHHHHHHHHh------hCCCC-CCCh
Q psy13777          4 ELAQYREVAAFAQ-FGSD-LDAATQQLLNRGVRLT-ELLKQGQYVPM----AIEEQVAVIYCGV------RGHLD-KLDP   69 (121)
Q Consensus         4 ~LAQyrELeaFaq-FgSd-LD~~Tk~~L~rG~rl~-elLKQ~q~~P~----~~~eQv~~L~a~~------~g~ld-~i~~   69 (121)
                      -|++|+|++.+.+ +|.| |++..+..+++|+++. ..|+|+.|+|+    |+++|+.+|-.+.      ..++. .+|.
T Consensus       465 ~La~~~el~~ii~i~G~d~Ls~~dk~~l~~ar~i~e~fL~Q~~f~~~d~~~~~~k~~~~l~~i~~~~~~~~~~~~~~~~~  544 (588)
T 3mfy_A          465 LLQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFYDKTMEAINRGVPL  544 (588)
T ss_dssp             HHHHHHHHHHHHHHHCSTTCCHHHHHHHHHHHHHHHHTTCCCTTSTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred             HHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            5899999999999 8999 9999999999999998 59999999999    9999997766542      11211 3677


Q ss_pred             hHHHH
Q psy13777         70 AKITT   74 (121)
Q Consensus        70 ~~v~~   74 (121)
                      +.|..
T Consensus       545 ~~i~~  549 (588)
T 3mfy_A          545 EEIAK  549 (588)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            77766

>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C

Probab=97.61  E-value=0.00015  Score=62.28  Aligned_cols=57  Identities=19%  Similarity=0.289  Sum_probs=51.7

Q ss_pred             hhhhhhHHHHHHHh-hcCC-ccHHHHHHHHhHHHHHH-HhhcCCCCC----CCHHHHHHHHHHH
Q psy13777          3 LELAQYREVAAFAQ-FGSD-LDAATQQLLNRGVRLTE-LLKQGQYVP----MAIEEQVAVIYCG   59 (121)
Q Consensus         3 L~LAQyrELeaFaq-FgSd-LD~~Tk~~L~rG~rl~e-lLKQ~q~~P----~~~~eQv~~L~a~   59 (121)
                      =-|++|+|++.+.+ +|.| |.+..+..+++|+++.+ .|+|+.|+|    .|+++|+.+|-.+
T Consensus       456 ~~l~~~~el~~ii~i~G~d~Ls~~dk~~l~~a~~i~~~fL~Q~~f~~~d~~~~~~kq~~~l~~i  519 (578)
T 3gqb_A          456 ELLQREAGLQEIVQLVGPDALQDAERLVIEVGRIIREDFLQQNAYHEVDAYSSMKKAYGIMKMI  519 (578)
T ss_dssp             HHHHHHHTTTTTTTTTTGGGCCHHHHHHHHHHHHHHHHHTCCCSSSTTTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHHHHhCCCCCCCCceecCCHHHHHHHHHHH
Confidence            35899999999999 8999 99999999999999985 999999998    8999999876654

>1cg5_B Protein (hemoglobin); oxygen transport; HET: HEM; 1.60A {Dasyatis akajei} SCOP: a.1.1.2 PDB: 1cg8_B*

Probab=80.74  E-value=5  Score=27.47  Aligned_cols=91  Identities=7%  Similarity=0.000  Sum_probs=54.5

Q ss_pred             HHHhhcCCccHHHHHHHHhHHHHHHHhhcCCCC---CCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHHHHhchhH
Q psy13777         13 AFAQFGSDLDAATQQLLNRGVRLTELLKQGQYV---PMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFLAHIKSSERG   89 (121)
Q Consensus        13 aFaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q~~---P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~~~l~~~~~~   89 (121)
                      -|.+||.|++..+.+...+|+++...|-.---.   .-+.-.++.-.++.     -.|++++.+.+-..|+..|....  
T Consensus        41 ~F~~~~~d~~~~~~~~~~h~~~v~~al~~~v~~ld~l~~~l~~L~~~H~~-----~~V~p~~f~~~g~~Ll~~l~~~l--  113 (141)
T 1cg5_B           41 LFSKLQGLFSANDIGVQQHADKVQRALGEAIDDLKKVEINFQNLSGKHQE-----IGVDTQNFKLLGQTFMVELALHY--  113 (141)
T ss_dssp             TCGGGTTCCSTTSHHHHHHHHHHHHHHHHHHHTTTSHHHHTHHHHHHHHH-----HTCCTHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh-----cCCCHHHHHHHHHHHHHHHHHHc--
Confidence            378887788887788889999987655321111   11122222223332     25677777777777776664332  


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy13777         90 LLESIKKEGKITEDTDAKLKTVVTNFLA  117 (121)
Q Consensus        90 ~~~~i~~~~~l~~~~~~~l~~~~~~~~~  117 (121)
                             +..++++..+.-.++...+..
T Consensus       114 -------g~~~t~e~~~AW~k~~~~va~  134 (141)
T 1cg5_B          114 -------KKTFRPKEHAAAYKFFRLVAE  134 (141)
T ss_dssp             -------GGGCCHHHHHHHHHHHHHHHH
T ss_pred             -------CCCCCHHHHHHHHHHHHHHHH
Confidence                   234888887777776655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	121
d2jdia1	131	a.69.1.1 (A:380-510) F1 ATP synthase alpha subunit	9e-42
d1fx0a1	129	a.69.1.1 (A:373-501) F1 ATP synthase alpha subunit	1e-39
d1skyb1	131	a.69.1.1 (B:372-502) F1 ATP synthase alpha subunit	1e-36

>d2jdia1 a.69.1.1 (A:380-510) F1 ATP synthase alpha subunit, domain 3 {Cow (Bos taurus) [TaxId: 9913]} Length = 131

class: All alpha proteins
fold: Left-handed superhelix
superfamily: C-terminal domain of alpha and beta subunits of F1 ATP synthase
family: C-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase alpha subunit, domain 3
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  132 bits (333), Expect = 9e-42
 Identities = 92/119 (77%), Positives = 105/119 (88%)

Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           MKLELAQYREVAAFAQFGSDLDAATQQLL+RGVRLTELLKQGQY PMAIEEQVAVIY GV
Sbjct: 11  MKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGV 70

Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
           RG+LDKL+P+KIT FE  FL+H+ S  + LL  I+ +GKI+E++DAKLK +VTNFLA F
Sbjct: 71  RGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAGF 129

>d1fx0a1 a.69.1.1 (A:373-501) F1 ATP synthase alpha subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} Length = 129

class: All alpha proteins
fold: Left-handed superhelix
superfamily: C-terminal domain of alpha and beta subunits of F1 ATP synthase
family: C-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase alpha subunit, domain 3
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

 Score =  126 bits (319), Expect = 1e-39
 Identities = 52/119 (43%), Positives = 71/119 (59%)

Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           +KLELAQ+ E+ AFAQF SDLD ATQ  L RG RL ELLKQ Q  P+ +EEQV  IY G 
Sbjct: 11  LKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQPQSAPLTVEEQVMTIYTGT 70

Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF 119
            G+LD L+  ++  +  E   ++K+++    E I      TE+ +A LK  +   +  F
Sbjct: 71  NGYLDSLELDQVRKYLVELRTYVKTNKPEFQEIISSTKTFTEEAEALLKEAIQEQMERF 129

>d1skyb1 a.69.1.1 (B:372-502) F1 ATP synthase alpha subunit, domain 3 {Bacillus sp., strain ps3 [TaxId: 1409]} Length = 131

class: All alpha proteins
fold: Left-handed superhelix
superfamily: C-terminal domain of alpha and beta subunits of F1 ATP synthase
family: C-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase alpha subunit, domain 3
species: Bacillus sp., strain ps3 [TaxId: 1409]

 Score =  119 bits (300), Expect = 1e-36
 Identities = 48/120 (40%), Positives = 68/120 (56%), Gaps = 2/120 (1%)

Query: 1   MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGV 60
           ++L+LA YRE+ AFAQFGSDLD ATQ  + RG R  E+LKQ  + P+ +E+QV +IY   
Sbjct: 11  LRLDLAAYRELEAFAQFGSDLDKATQANVARGARTVEVLKQDLHQPIPVEKQVLIIYALT 70

Query: 61  RGHLDKLDPAKITTFEKEFLAHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT 120
           RG LD +    +  FEKEF   +  + + LLE I+    +    +  L   +  F   F 
Sbjct: 71  RGFLDDIPVEDVRRFEKEFYLWLDQNGQHLLEHIRTTKDLPN--EDDLNQAIEAFKKTFV 128

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	121
d2jdia1	131	F1 ATP synthase alpha subunit, domain 3 {Cow (Bos	100.0
d1fx0a1	129	F1 ATP synthase alpha subunit, domain 3 {Spinach (	100.0
d1skyb1	131	F1 ATP synthase alpha subunit, domain 3 {Bacillus	100.0
d2jdid1	118	F1 ATP synthase beta subunit, domain 3 {Rat (Rattu	94.67
d1skye1	114	F1 ATP synthase beta subunit, domain 3 {Bacillus s	94.22
d1fx0b1	108	F1 ATP synthase beta subunit, domain 3 {Spinach (S	90.79
d1xq5a_	142	Hemoglobin, alpha-chain {Yellow perch (Perca flave	80.33

>d2jdia1 a.69.1.1 (A:380-510) F1 ATP synthase alpha subunit, domain 3 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Left-handed superhelix
superfamily: C-terminal domain of alpha and beta subunits of F1 ATP synthase
family: C-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase alpha subunit, domain 3
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.5e-53  Score=301.87  Aligned_cols=120  Identities=77%  Similarity=1.118  Sum_probs=118.6

Q ss_pred             ChhhhhhhHHHHHHHhhcCCccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHH
Q psy13777          1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFL   80 (121)
Q Consensus         1 LkL~LAQyrELeaFaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~   80 (121)
                      |||+|||||||++|||||||||++|+++|+||+|++|+||||||+|+|+++||++|||+++||||+||+++|..|+.+++
T Consensus        11 lkl~lAQyrEle~FaqF~sdlD~~t~~~l~rG~rl~ElLKQ~q~~Pl~v~eQv~iL~A~~~G~lD~i~v~~I~~fe~~ll   90 (131)
T d2jdia1          11 MKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFL   90 (131)
T ss_dssp             HHHHHHHHHTTGGGSSSCSSSCHHHHHHHHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHTTTTTTSCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhHHHHHHHHhcccccchhHHHHHHHHHHHhcCCccccCHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhchhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcc
Q psy13777         81 AHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT  120 (121)
Q Consensus        81 ~~l~~~~~~~~~~i~~~~~l~~~~~~~l~~~~~~~~~~f~  120 (121)
                      +|++++||++++.|..+++++|++++.|.+++.+|++.|+
T Consensus        91 ~~l~~~~~~~l~~I~~~~~l~de~~~~L~~ai~~f~~~F~  130 (131)
T d2jdia1          91 SHVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAGFE  130 (131)
T ss_dssp             HHHHHTCHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcc
Confidence            9999999999999999999999999999999999999986

>d1fx0a1 a.69.1.1 (A:373-501) F1 ATP synthase alpha subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: All alpha proteins
fold: Left-handed superhelix
superfamily: C-terminal domain of alpha and beta subunits of F1 ATP synthase
family: C-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase alpha subunit, domain 3
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=100.00  E-value=1.1e-52  Score=298.85  Aligned_cols=119  Identities=44%  Similarity=0.645  Sum_probs=117.5

Q ss_pred             ChhhhhhhHHHHHHHhhcCCccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHH
Q psy13777          1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFL   80 (121)
Q Consensus         1 LkL~LAQyrELeaFaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~   80 (121)
                      |||+|||||||++|||||||||++|+++|+||+|++|+||||||+|+|+++||++|||+++||||+||+++|..|+.+++
T Consensus        11 lkl~laQy~El~aFaqfgsdlD~~t~~~l~rG~rl~ElLKQ~q~~Pl~v~eQv~iLyA~~~G~LD~ipv~~I~~fe~~ll   90 (129)
T d1fx0a1          11 LKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQPQSAPLTVEEQVMTIYTGTNGYLDSLELDQVRKYLVELR   90 (129)
T ss_dssp             HHHHHHHHHHHTTTGGGCSSCCHHHHHHHHHHHHHHHHHCCCTTCCCCHHHHHHHHHHHHTTSSSSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccchhHHHHHhhhHHHHHHHHHHcccccCCCHHHHHHHHHHHHcCccccCCHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhchhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc
Q psy13777         81 AHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANF  119 (121)
Q Consensus        81 ~~l~~~~~~~~~~i~~~~~l~~~~~~~l~~~~~~~~~~f  119 (121)
                      +|++++||++++.|..+++++|++++.|++++.+|++.|
T Consensus        91 ~~l~~~~~~il~~I~~~~~ltde~~~~L~~~i~~f~~~F  129 (129)
T d1fx0a1          91 TYVKTNKPEFQEIISSTKTFTEEAEALLKEAIQEQMERF  129 (129)
T ss_dssp             HHHHHTCHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999876

>d1skyb1 a.69.1.1 (B:372-502) F1 ATP synthase alpha subunit, domain 3 {Bacillus sp., strain ps3 [TaxId: 1409]}

class: All alpha proteins
fold: Left-handed superhelix
superfamily: C-terminal domain of alpha and beta subunits of F1 ATP synthase
family: C-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase alpha subunit, domain 3
species: Bacillus sp., strain ps3 [TaxId: 1409]

Probab=100.00  E-value=7.6e-52  Score=295.20  Aligned_cols=118  Identities=41%  Similarity=0.674  Sum_probs=112.3

Q ss_pred             ChhhhhhhHHHHHHHhhcCCccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHH
Q psy13777          1 MKLELAQYREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVRGHLDKLDPAKITTFEKEFL   80 (121)
Q Consensus         1 LkL~LAQyrELeaFaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~~~g~ld~i~~~~v~~f~~~l~   80 (121)
                      |||+||||||||+|||||||||++|+++|+||+|++|+|||+||+|+|+++||++|||+++||||+||+++|..|+..++
T Consensus        11 lkl~laQyrEle~FaqFgsdLD~~t~~~L~rG~rl~ElLKQ~q~sP~~v~eQv~iLyA~~~G~LD~Ipv~~I~~fe~~ll   90 (131)
T d1skyb1          11 LRLDLAAYRELEAFAQFGSDLDKATQANVARGARTVEVLKQDLHQPIPVEKQVLIIYALTRGFLDDIPVEDVRRFEKEFY   90 (131)
T ss_dssp             HHHHHHHHHHHC-CCCC-CC-CHHHHHHHHHHHHHHHHHCCCTTCCCCHHHHHHHHHHTTTTTTTTSCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCccccCcHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhchhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcc
Q psy13777         81 AHIKSSERGLLESIKKEGKITEDTDAKLKTVVTNFLANFT  120 (121)
Q Consensus        81 ~~l~~~~~~~~~~i~~~~~l~~~~~~~l~~~~~~~~~~f~  120 (121)
                      +|++++||++++.|..+++++++  +.|++++++|++.|.
T Consensus        91 ~~l~~~~~~~l~~I~~~~~l~de--~~L~~~i~~fk~~F~  128 (131)
T d1skyb1          91 LWLDQNGQHLLEHIRTTKDLPNE--DDLNQAIEAFKKTFV  128 (131)
T ss_dssp             HHHHHGGGGTHHHHHHHSCCCHH--HHHHHHHHHHHHHTT
T ss_pred             HHHHHhhHHHHHHHHHcCCCCcH--HHHHHHHHHHHHHcc
Confidence            99999999999999999999986  679999999999985

>d2jdid1 a.69.1.1 (D:358-475) F1 ATP synthase beta subunit, domain 3 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Left-handed superhelix
superfamily: C-terminal domain of alpha and beta subunits of F1 ATP synthase
family: C-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase beta subunit, domain 3
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.67  E-value=0.13  Score=34.12  Aligned_cols=69  Identities=16%  Similarity=0.240  Sum_probs=57.5

Q ss_pred             hhhhhhHHHHHHHhh-cC-CccHHHHHHHHhHHHHHHHhhcCC----------CCCCCHHHHHHHHHHHhhCCCCCCChh
Q psy13777          3 LELAQYREVAAFAQF-GS-DLDAATQQLLNRGVRLTELLKQGQ----------YVPMAIEEQVAVIYCGVRGHLDKLDPA   70 (121)
Q Consensus         3 L~LAQyrELeaFaqF-gS-dLD~~Tk~~L~rG~rl~elLKQ~q----------~~P~~~~eQv~~L~a~~~g~ld~i~~~   70 (121)
                      --|..|+||+.--.- |= .|.++-|....|++||...|-||=          +.-+|+++-+--.=++-+|-+|++|..
T Consensus        19 ~~LqrYkeLqdIIaiLG~dELSeeDk~~V~RARklqrfLsQpFfvae~fTg~~G~~V~l~dTi~g~~~Il~G~~D~~pE~   98 (118)
T d2jdid1          19 KILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQ   98 (118)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGSCHHHHHHHHHHHHHHHHHCCCCGGGHHHHSSCCCCCCHHHHHHHHHHHHTTTTTTSCGG
T ss_pred             HHHHHhHHHHHHHHHcChhhcCHHHhHHHHHHHHHHHHhcCcceeeeeecCCCcceecHHHHHHHHHHHhCCCCCCCCHH
Confidence            357889999876554 43 799999999999999999999984          466888888888888889999998876


Q ss_pred             H
Q psy13777         71 K   71 (121)
Q Consensus        71 ~   71 (121)
                      .
T Consensus        99 ~   99 (118)
T d2jdid1          99 A   99 (118)
T ss_dssp             G
T ss_pred             H
Confidence            4

>d1skye1 a.69.1.1 (E:357-470) F1 ATP synthase beta subunit, domain 3 {Bacillus sp., strain ps3 [TaxId: 1409]}

class: All alpha proteins
fold: Left-handed superhelix
superfamily: C-terminal domain of alpha and beta subunits of F1 ATP synthase
family: C-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase beta subunit, domain 3
species: Bacillus sp., strain ps3 [TaxId: 1409]

Probab=94.22  E-value=0.15  Score=33.56  Aligned_cols=68  Identities=21%  Similarity=0.318  Sum_probs=56.1

Q ss_pred             hhhhhHHHHHHHhh-cC-CccHHHHHHHHhHHHHHHHhhcCC----------CCCCCHHHHHHHHHHHhhCCCCCCChhH
Q psy13777          4 ELAQYREVAAFAQF-GS-DLDAATQQLLNRGVRLTELLKQGQ----------YVPMAIEEQVAVIYCGVRGHLDKLDPAK   71 (121)
Q Consensus         4 ~LAQyrELeaFaqF-gS-dLD~~Tk~~L~rG~rl~elLKQ~q----------~~P~~~~eQv~~L~a~~~g~ld~i~~~~   71 (121)
                      -|..|+||+.--.- |= .|.++-|....|++||...|-||=          +.-+|+++-+-..=++-+|-+|++|...
T Consensus        17 ~LqrYkeLqDIIaiLG~dELSeeDk~~V~RARklqrFLsQpF~vaE~fTG~~G~~V~l~dTi~g~~~Il~G~~D~~pE~~   96 (114)
T d1skye1          17 TLERYKELQDIIAILGMDELSDEDKLVVHRARRIQFFLSQNFHVAEQFTGQPGSYVPVKETVRGFKEILEGKYDHLPEDR   96 (114)
T ss_dssp             HHHHHHHHHHHHHHHCSTTCTTHHHHHHHHHHHHHHHTCBCCTTTHHHHSCCCCCCCHHHHHHHHHHHHTTTTTTSCGGG
T ss_pred             HHHHHHHHHHHHHhcCchhcCHHHHHHHHHHHHHHHHhcCCceeceeecCCCeeEeeHHHHHHHHHHHhCCCCCCCCHHH
Confidence            47889999876554 43 699999999999999999999985          4567888888888888888888888764

>d1fx0b1 a.69.1.1 (B:378-485) F1 ATP synthase beta subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: All alpha proteins
fold: Left-handed superhelix
superfamily: C-terminal domain of alpha and beta subunits of F1 ATP synthase
family: C-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase beta subunit, domain 3
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=90.79  E-value=0.34  Score=31.48  Aligned_cols=68  Identities=19%  Similarity=0.302  Sum_probs=57.2

Q ss_pred             hhhhhHHHHHHHhh-c-CCccHHHHHHHHhHHHHHHHhhcCC----------CCCCCHHHHHHHHHHHhhCCCCCCChhH
Q psy13777          4 ELAQYREVAAFAQF-G-SDLDAATQQLLNRGVRLTELLKQGQ----------YVPMAIEEQVAVIYCGVRGHLDKLDPAK   71 (121)
Q Consensus         4 ~LAQyrELeaFaqF-g-SdLD~~Tk~~L~rG~rl~elLKQ~q----------~~P~~~~eQv~~L~a~~~g~ld~i~~~~   71 (121)
                      -|..|+||+.--.- | ..|.++-|....|++||...|-||=          +.-+|+++-+--.=++-+|=.|++|...
T Consensus        17 iLqrYkeLqdIIailG~dELSeeDk~~v~RArklq~FLtQpFfvae~fTg~~G~~V~l~dTi~g~~~IL~G~~D~~pE~~   96 (108)
T d1fx0b1          17 TLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDSLPEQA   96 (108)
T ss_dssp             HHHHHHHHHHHHHHHCSTTSCTTTHHHHHHHHHHHHHTCCCCSSCTTTSCSCCCCCCHHHHHHHHHTTTTTTTSSSCGGG
T ss_pred             HHHHHHHHHHHHHHhhhhhcChhhhHHHHHHHHHHHHhccccccceecCCCCcCEecHHHHHhhHHHHhCCCcCCCCHHH
Confidence            47889999887654 3 3789999999999999999999985          4557888888888889999999998764

>d1xq5a_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Yellow perch (Perca flavescens) [TaxId: 8167]}

class: All alpha proteins
fold: Globin-like
superfamily: Globin-like
family: Globins
domain: Hemoglobin, alpha-chain
species: Yellow perch (Perca flavescens) [TaxId: 8167]

Probab=80.33  E-value=2.8  Score=26.82  Aligned_cols=90  Identities=11%  Similarity=0.186  Sum_probs=55.4

Q ss_pred             HHhhcCCccHHHHHHHHhHHHHHHHhhcCCCCCCCHHHHHHHHHHHhh-CCCCCCChhHHHHHHHHHHHHHHhchhHHHH
Q psy13777         14 FAQFGSDLDAATQQLLNRGVRLTELLKQGQYVPMAIEEQVAVIYCGVR-GHLDKLDPAKITTFEKEFLAHIKSSERGLLE   92 (121)
Q Consensus        14 FaqFgSdLD~~Tk~~L~rG~rl~elLKQ~q~~P~~~~eQv~~L~a~~~-g~ld~i~~~~v~~f~~~l~~~l~~~~~~~~~   92 (121)
                      |.+|+ |++.++.+...||.|++..+-..--.|=.+..-+.- .+-.+ +-+ .|+++..+.+...++..+....     
T Consensus        43 F~~f~-~~~~~~~~~~~H~~~v~~~l~~~v~~ld~l~~~l~~-l~~~H~~~~-~v~~~~f~~~~~~ll~~l~~~l-----  114 (142)
T d1xq5a_          43 FSHWK-DLSPGSAPVNKHGKTIMGGIVDAVASIDDLNAGLLA-LSELHAFTL-RVDPANFKILSHCILVLLAVKF-----  114 (142)
T ss_dssp             GTTCS-CCSTTSHHHHHHHHHHHHHHHHHHHTTTCHHHHTHH-HHHHHHHTS-CCCTHHHHHHHHHHHHHHHHHC-----
T ss_pred             hcccc-ccCCCChhHHHHHHHHHHHHHHHHhcchhhHHHHHH-HHHhCcccc-CCCcHHHHHHHHHHHHHHHHHc-----
Confidence            55555 566677788899999988765544444444432222 22222 212 6899999999999998875443     


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHH
Q psy13777         93 SIKKEGKITEDTDAKLKTVVTNF  115 (121)
Q Consensus        93 ~i~~~~~l~~~~~~~l~~~~~~~  115 (121)
                          +..++++..+.=.+++..+
T Consensus       115 ----g~~~t~e~~~AW~k~~~~v  133 (142)
T d1xq5a_         115 ----PKDFTPEVHISYDKFFSAL  133 (142)
T ss_dssp             ----GGGCCHHHHHHHHHHHHHH
T ss_pred             ----cCCCCHHHHHHHHHHHHHH
Confidence                2347777766554444433