Psyllid ID: psy13786

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MAETEKLLGKTKKSYAHPVIATSSNAADIIDISNGEHTDTPTLFRLIYLGLIVILPGVAPGMSFGFPAVALPQMSYLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFFWYTTVAYIGAFVSFLSLVLVAMII
Secondary Structure (PSIPRED)
cHHccHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccHcccccccccccccccHHHEEEHHHHHHHHccHHcEEcccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEEEccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MAETEKLLGktkksyahpviatssnaadiidisngehtdtpTLFRLIYLGLIVilpgvapgmsfgfpavalpqmsyltIDQASWFASISAITMPIgcllsgpiidkygrksalMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIhntdlrgslstWSTIALTSGILLSYLTGAFFWYTTVAYIGAFVSFLSLVLVAMII
Flexible Loop (DISEMBL)
maetekllgktkksyahpviatssnaadiidISNGEHTDTPTLFRLIYLGLIVILPGVAPGMSFGFPAVALPQMSYLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFFWYTTVAYIGAFVSFLSLVLVAMII
Low Complexity Region (SEG)
MAETEKLLGKTKKSYAHPVIATSSNAADIIDISNGEHTDTPTLFRLIYLGLIVILPGVAPGMSFGFPAVALPQMSYLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFFWYTTVAYIGAFVSFLSLVLVAMII
Disordered region (IsUnstruct)
******************VIATSSNAADIIDISNGEHTDTPTLFRLIYLGLIVILPGVAPGMSFGFPAVALPQMSYLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFFWYTTVAYIGAFVSFLSLVLVAMI*
Disordered Region (DISOPRED)
*********************************************LIYLGLIVILPGVAPGMSFGFPAVALPQMSYLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFFWYTTVAYIGAFVSFLSLVLVAMII
Disordered Region (DISEMBL)
MAETEKLLGKTKKSYAHPVIATSSNAADIIDISNGEHTDTPTLFRLIYLGLIVILPGVAPGMSFGFPAVALPQMSYLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFFWYTTVAYIGAFVSFLSLVLVAMII
Disordered Region (DISPRO)
**************************************DTPTLFRLIYLGLIVILPGVAPGMSFGFPAVALPQMSYLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFFWYTTVAYIGAFVSFLSLVLVAMII
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAETEKLLGKTKKSYAHPVIATSSNAADIIDISNGEHTDTPTLFRLIYLGLIVILPGVAPGMSFGFPAVALPQMSYLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFFWYTTVAYIGAFVSFLSLVLVAMII
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	219	2.2.26 [Sep-21-2011]
Q9FRL3	487	Sugar transporter ERD6-li	yes	N/A	0.689	0.310	0.343	2e-15
Q93YP9	488	Sugar transporter ERD6-li	no	N/A	0.689	0.309	0.343	6e-15
A9ZSY3	505	Facilitated trehalose tra	N/A	N/A	0.648	0.281	0.290	4e-13
B4HNS0	857	Facilitated trehalose tra	N/A	N/A	0.634	0.162	0.295	5e-13
A9ZSY2	502	Facilitated trehalose tra	N/A	N/A	0.940	0.410	0.271	5e-13
B0WC46	517	Facilitated trehalose tra	N/A	N/A	0.643	0.272	0.317	1e-12
B4LPX5	911	Facilitated trehalose tra	N/A	N/A	0.757	0.182	0.284	3e-12
Q7PIR5	793	Facilitated trehalose tra	no	N/A	0.771	0.213	0.296	8e-12
B4KR05	863	Facilitated trehalose tra	N/A	N/A	0.771	0.195	0.268	1e-11
Q8MKK4	488	Facilitated trehalose tra	no	N/A	0.634	0.284	0.309	2e-11

>sp|Q9FRL3|ERDL6_ARATH Sugar transporter ERD6-like 6 OS=Arabidopsis thaliana GN=At1g75220 PE=1 SV=1

 Score = 82.4 bits (202), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 6/157 (3%)

Query: 51  LIVILPGVAPGMSFGFPA---VALPQMSYLTIDQASWFASISAITMPIGCLLSGPIIDKY 107
           LIV L  +  G + G+ +    A+ +   LT+ + S F S+S +   +G + SG I +  
Sbjct: 53  LIVALGPIQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYI 112

Query: 108 GRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNT 167
           GRK +LMI  +P++ GWL ++   D   LY+ RLL G  VG+ +    VY AE   I   
Sbjct: 113 GRKGSLMIAAIPNIIGWLCISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAE---IAPQ 169

Query: 168 DLRGSLSTWSTIALTSGILLSYLTGAFFWYTTVAYIG 204
           ++RG L + + +++T GI+L+YL G F  +  +A +G
Sbjct: 170 NMRGGLGSVNQLSVTIGIMLAYLLGLFVPWRILAVLG 206

Sugar transporter.
Arabidopsis thaliana (taxid: 3702)

>sp|Q93YP9|ERDL4_ARATH Sugar transporter ERD6-like 4 OS=Arabidopsis thaliana GN=At1g19450 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 6/157 (3%)

Query: 51  LIVILPGVAPGMSFGFPA---VALPQMSYLTIDQASWFASISAITMPIGCLLSGPIIDKY 107
           LIV L  +  G + G+ +    A+ +   LT+ + S F S+S +   +G + SG I +  
Sbjct: 54  LIVALGPIQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYV 113

Query: 108 GRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNT 167
           GRK +LMI  +P++ GWL ++   D   LY+ RLL G  VG+ +    VY AE   I   
Sbjct: 114 GRKGSLMIAAIPNIIGWLSISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAE---IAPQ 170

Query: 168 DLRGSLSTWSTIALTSGILLSYLTGAFFWYTTVAYIG 204
            +RG+L + + +++T GI+L+YL G F  +  +A +G
Sbjct: 171 TMRGALGSVNQLSVTIGIMLAYLLGLFVPWRILAVLG 207

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|A9ZSY3|TRET1_BOMMO Facilitated trehalose transporter Tret1 OS=Bombyx mori GN=Tret1 PE=1 SV=1

 Score = 75.1 bits (183), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 83/148 (56%), Gaps = 6/148 (4%)

Query: 61  GMSFGFPAVALPQMSY---LTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITN 117
           G S G+ + A+  M+    +T ++ +W   +  +   +G ++ GP+I+  GRK  +M T 
Sbjct: 66  GFSSGYTSPAVLTMNITLDITKEEITWVGGLMPLAALVGGIVGGPLIEYLGRKKTIMGTA 125

Query: 118 VPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWS 177
           VP   GW+L+A   +++ ++  R++ G+ VG+ +    VY  E I     ++RG+L    
Sbjct: 126 VPFTIGWMLIANAINVVMVFAGRVICGVCVGIVSLAFPVYIGETI---QPEVRGALGLLP 182

Query: 178 TIALTSGILLSYLTGAFFWYTTVAYIGA 205
           T    +GILL++L G++  ++ +A+ GA
Sbjct: 183 TAFGNTGILLAFLVGSYLDWSNLAFFGA 210

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Bombyx mori (taxid: 7091)

>sp|B4HNS0|TRE11_DROSE Facilitated trehalose transporter Tret1-1 OS=Drosophila sechellia GN=Tret1-1 PE=3 SV=1

 Score = 74.3 bits (181), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 75/142 (52%), Gaps = 3/142 (2%)

Query: 77  LTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINL 136
           +T D  SW   I  +    G +  GP+I+  GR++ ++ T VP +   LL+A   ++  +
Sbjct: 434 VTQDAGSWVGGIMPLAALAGGITGGPLIEYLGRRNTILATAVPFIVSSLLIACAVNVAMV 493

Query: 137 YISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFFW 196
              R L+G  VG+A+    VY  E +     ++RG+L    T     GILL ++ G+F  
Sbjct: 494 LCGRFLAGFCVGIASLSLPVYLGETV---QPEVRGTLGLLPTAFGNIGILLCFVAGSFMN 550

Query: 197 YTTVAYIGAFVSFLSLVLVAMI 218
           ++ +A++GA +    L+L+ +I
Sbjct: 551 WSMLAFLGAALPVPFLILMFLI 572

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila sechellia (taxid: 7238)

>sp|A9ZSY2|TRET1_APILI Facilitated trehalose transporter Tret1 OS=Apis mellifera ligustica GN=Tret1 PE=1 SV=1

 Score = 74.3 bits (181), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 109/217 (50%), Gaps = 11/217 (5%)

Query: 10  KTKKSYAHPVIATSSNAADIIDISNGEHTDTPTLFRLIYLG-LIVILPGVAPGMSFGFPA 68
            TK++ +   I  + ++ D++     E   +P  + +  L  L V +  +  G S  + +
Sbjct: 5   NTKQTMSSQNIKPAKDSDDVLHTQFKEVKRSPMRYTMQLLAALAVSMASLMIGYSSSYTS 64

Query: 69  VALPQMS-------YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSL 121
            AL  M         +T+D A W  SI  ++  IG ++ GP I+  GR++ ++ T +P L
Sbjct: 65  PALVSMRDNTTATFEVTMDMAMWIGSIMPLSALIGGIIGGPCIEYIGRRNTILSTALPFL 124

Query: 122 CGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIAL 181
            GWL +A  +++  + + R + G  VG+A+    VY  E I     ++RGSL    T+  
Sbjct: 125 AGWLFIALATNVAMILVGRSICGFCVGVASLSLPVYLGESI---QPEVRGSLGLLPTVFG 181

Query: 182 TSGILLSYLTGAFFWYTTVAYIGAFVSFLSLVLVAMI 218
            SGIL+ +  G +  +  +A +GA +  + L+L+ +I
Sbjct: 182 NSGILMCFTAGMYLAWRNLALLGACIPIIFLILMFLI 218

Moderate-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Apis mellifera ligustica (taxid: 7469)

>sp|B0WC46|TRET1_CULQU Facilitated trehalose transporter Tret1 OS=Culex quinquefasciatus GN=Tret1 PE=3 SV=1

 Score = 73.2 bits (178), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 80/145 (55%), Gaps = 4/145 (2%)

Query: 75  SYLTIDQA-SWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDL 133
           S+   DQ+ SW   I  +   +G +L GP+I+  GRK+ ++ T  P +  WLL+A  + +
Sbjct: 91  SFEVTDQSGSWVGGIMPLAGLVGGILGGPLIEYLGRKNTILATATPFIISWLLIACATHV 150

Query: 134 INLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGA 193
             + + R LSG SVG+A+    VY  E +     ++RG+L    T     GILL ++ G 
Sbjct: 151 AMVLVGRALSGFSVGVASLSLPVYLGETV---QPEVRGTLGLLPTAFGNIGILLCFVAGN 207

Query: 194 FFWYTTVAYIGAFVSFLSLVLVAMI 218
           +  ++ +A++GA +    L+L+ +I
Sbjct: 208 YMDWSELAFLGATLPVPFLILMFLI 232

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Culex quinquefasciatus (taxid: 7176)

>sp|B4LPX5|TRET1_DROVI Facilitated trehalose transporter Tret1 OS=Drosophila virilis GN=Tret1 PE=3 SV=2

 Score = 72.0 bits (175), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 50/176 (28%), Positives = 87/176 (49%), Gaps = 10/176 (5%)

Query: 50  GLIVILPGVAPGMSFGFPAVALPQMS-------YLTIDQASWFASISAITMPIGCLLSGP 102
            L V L  +  G +  + + AL  M+        +T   ASW   I  +    G +  GP
Sbjct: 454 ALSVSLGSLVVGFASAYTSPALVSMTNTNLTSFVVTPQAASWVGGIMPLAGLAGGIAGGP 513

Query: 103 IIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECI 162
            I+  GR++ ++ T VP +  WLL+A   ++I +   R L+G  VG+A+    VY  E +
Sbjct: 514 FIEYLGRRNTILATAVPFIVSWLLIACAVNVIMVLCGRFLAGFCVGIASLSLPVYLGETV 573

Query: 163 TIHNTDLRGSLSTWSTIALTSGILLSYLTGAFFWYTTVAYIGAFVSFLSLVLVAMI 218
                ++RG+L    T     GILL ++ G +  ++ +A++GA +    L+L+ +I
Sbjct: 574 ---QPEVRGTLGLLPTAFGNIGILLCFVAGTYMDWSMLAFLGASLPVPFLILMFLI 626

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila virilis (taxid: 7244)

>sp|Q7PIR5|TRET1_ANOGA Facilitated trehalose transporter Tret1 OS=Anopheles gambiae GN=Tret1 PE=1 SV=3

 Score = 70.5 bits (171), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 10/179 (5%)

Query: 47  IYLGLIVILPGVAPGMSFGFPAVALPQM------SYLTIDQA-SWFASISAITMPIGCLL 99
           +   L V L  +  G S  + + AL  M      S+   DQ+ SW   I  +    G +L
Sbjct: 333 VLAALSVSLGSMVVGFSSAYTSPALVSMKDRNITSFEVTDQSGSWVGGIMPLAGLAGGIL 392

Query: 100 SGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAA 159
            GP+I+  GRK+ ++ T  P +  WLL+   + +  + + R LSGL VG+A+    VY  
Sbjct: 393 GGPMIEYLGRKNTILATATPFIISWLLIGCATHVAMVLVGRALSGLCVGIASLSLPVYLG 452

Query: 160 ECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFFWYTTVAYIGAFVSFLSLVLVAMI 218
           E +     ++RG+L    T     GILL ++ G +  ++ +A++GA +    L+L+ +I
Sbjct: 453 ETV---QPEVRGTLGLLPTAFGNIGILLCFVAGKYLDWSGLAFLGAALPIPFLLLMFLI 508

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Anopheles gambiae (taxid: 7165)

>sp|B4KR05|TRET1_DROMO Facilitated trehalose transporter Tret1 OS=Drosophila mojavensis GN=Tret1 PE=3 SV=2

 Score = 69.7 bits (169), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 87/179 (48%), Gaps = 10/179 (5%)

Query: 47  IYLGLIVILPGVAPGMSFGFPAVALPQMS-------YLTIDQASWFASISAITMPIGCLL 99
           +   L V L  +  G +  + + AL  M+        +T   ASW   I  +    G + 
Sbjct: 403 VLAALSVSLGSLVVGFASAYTSPALVSMTNTNLTSFVVTPQAASWVGGIMPLAGLAGGIA 462

Query: 100 SGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAA 159
            GP I+  GR++ ++ T VP +  WLL+A   +++ +   R L+G  VG+A+    VY  
Sbjct: 463 GGPFIEYLGRRNTILATAVPFIISWLLIACAVNVVMVLCGRFLAGFCVGIASLSLPVYLG 522

Query: 160 ECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFFWYTTVAYIGAFVSFLSLVLVAMI 218
           E +     ++RG+L    T     GILL ++ G +  ++ +A++G  +    L+L+ +I
Sbjct: 523 ETV---QPEVRGTLGLLPTAFGNIGILLCFVAGTYMDWSMLAFLGGTLPVPFLILMFLI 578

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila mojavensis (taxid: 7230)

>sp|Q8MKK4|TRE12_DROME Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila melanogaster GN=Tret1-2 PE=2 SV=1

 Score = 69.3 bits (168), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 76/142 (53%), Gaps = 3/142 (2%)

Query: 77  LTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINL 136
           +T D  SW   I  +    G +  GP+I+  GR+S ++ T VP +   LL+A   ++I +
Sbjct: 66  VTKDAGSWVGGIMPLAALAGGITGGPLIEYLGRRSTILATAVPFIVSSLLIACAVNVIMI 125

Query: 137 YISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFFW 196
              R L+G  VG+A+    VY  E +     ++RG+L    T     GIL+ Y+ G+F  
Sbjct: 126 LCGRFLTGFCVGIASLSLPVYLGETL---QPEVRGTLGLLPTALGNIGILVCYVAGSFMN 182

Query: 197 YTTVAYIGAFVSFLSLVLVAMI 218
           ++ +A++GA +    L+L+ +I
Sbjct: 183 WSMLAFLGAALPVPFLILMIII 204

Fails to transport trehalose.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
193608383	496	PREDICTED: facilitated trehalose transpo	0.858	0.379	0.494	3e-44
291461563	486	sugar transporter 2 [Nilaparvata lugens]	0.835	0.376	0.407	1e-30
291461591	549	sugar transporter 16 [Nilaparvata lugens	0.780	0.311	0.402	5e-29
91084361	491	PREDICTED: similar to sugar transporter	0.662	0.295	0.433	8e-28
291461583	527	sugar transporter 12 [Nilaparvata lugens	0.684	0.284	0.421	2e-26
242013039	490	conserved hypothetical protein [Pediculu	0.748	0.334	0.382	1e-25
345495221	523	PREDICTED: facilitated trehalose transpo	0.771	0.323	0.393	3e-25
340724392	541	PREDICTED: facilitated trehalose transpo	0.872	0.353	0.349	1e-24
350397791	541	PREDICTED: facilitated trehalose transpo	0.872	0.353	0.334	8e-24
110762820	514	PREDICTED: facilitated trehalose transpo	0.881	0.375	0.331	1e-23

>gi|193608383|ref|XP_001943271.1| PREDICTED: facilitated trehalose transporter Tret1-2 homolog isoform 1 [Acyrthosiphon pisum] gi|328708747|ref|XP_003243791.1| PREDICTED: facilitated trehalose transporter Tret1-2 homolog isoform 2 [Acyrthosiphon pisum]

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 95/192 (49%), Positives = 135/192 (70%), Gaps = 4/192 (2%)

Query: 31  DISNGEHT--DTPTLFRLIYLGLIVILPGVAPGMSFGFPAVALPQMSYLTIDQASWFASI 88
           D S+  H    T  + R+++L L+V +P +APGMSFG+ A+ L Q+  LT+D+ SWFAS+
Sbjct: 17  DYSSKPHHLHYTSKISRVLWLALVVTMPCLAPGMSFGYSAIVLDQLP-LTVDEQSWFASL 75

Query: 89  SAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKS-DLINLYISRLLSGLSV 147
            +  MPIGCLLSGP+IDK GRK+ALM+TN+PS  GWL+++ +  +L  LY  +LL G+SV
Sbjct: 76  PSTMMPIGCLLSGPLIDKLGRKTALMVTNLPSCLGWLMLSRQPVNLYVLYAGQLLVGMSV 135

Query: 148 GLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFFWYTTVAYIGAFV 207
           GL+TTPA VYAAECIT++ T LRG  +  ++I L  G+ L+YL G       VAY+ AFV
Sbjct: 136 GLSTTPATVYAAECITVNYTGLRGCFTIMTSIMLNFGMFLTYLLGTLMPAYVVAYVAAFV 195

Query: 208 SFLSLVLVAMII 219
           SF + + + ++I
Sbjct: 196 SFAAFLFIGLLI 207

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291461563|dbj|BAI83416.1| sugar transporter 2 [Nilaparvata lugens]

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 77/189 (40%), Positives = 119/189 (62%), Gaps = 6/189 (3%)

Query: 34  NGEHTDTPTLFRLIYLGLIVILPGVAPGMSFGFPAVALPQMSYLTIDQASWFASISAITM 93
           N +   +P L +  ++  ++ LP +APGM  GF A  LPQ+  L +  A+WFAS+ A+ +
Sbjct: 20  NLDENKSP-LKKHAFIAFVIALPSIAPGMCLGFSAETLPQLD-LGVSDAAWFASVIALMI 77

Query: 94  PIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMA---TKSDLINLYISRLLSGLSVGLA 150
           PIG LLS P+++++GR+ AL   +V  L GWL+++   T    + LY+ R+L+G+SVGLA
Sbjct: 78  PIGYLLSKPVMERFGRRVALHTVSVVGLLGWLMLSFRPTDPTTVKLYLGRMLTGVSVGLA 137

Query: 151 TTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFFWYTTVAYIGAFVSFL 210
             PAA YA E +     + + S+ TWST+AL  GIL++Y+ GA   Y  VA + A +S  
Sbjct: 138 MLPAATYANESLKKDAVE-QTSIVTWSTVALCFGILVTYICGAMIPYYQVAGVAAIISVF 196

Query: 211 SLVLVAMII 219
           SL+ VA+ +
Sbjct: 197 SLLAVAIFV 205

Source: Nilaparvata lugens

Species: Nilaparvata lugens

Genus: Nilaparvata

Family: Delphacidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291461591|dbj|BAI83430.1| sugar transporter 16 [Nilaparvata lugens]

 Score =  133 bits (335), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 74/184 (40%), Positives = 121/184 (65%), Gaps = 13/184 (7%)

Query: 46  LIYLGLIVI--LPGVAPGMSFGFPAVALPQMSY------LTIDQASWFASISAITMPIGC 97
           +I +GL +I  L  V+ G+S GF AVALP MS       ++ ++ASW AS++AIT+PIGC
Sbjct: 15  IIQIGLCIIGNLAQVSSGLSMGFSAVALPYMSQEGGEINVSKEEASWIASLAAITVPIGC 74

Query: 98  LLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVY 157
           L+SGPI+D++GRK  +++ N+P   GWLL+A + ++  +Y+ R L+G   GLA+TPA +Y
Sbjct: 75  LVSGPILDRWGRKMGILLVNLPFFVGWLLVAVQPNIYRIYLGRALTGFGTGLASTPATIY 134

Query: 158 AAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFFW--YTTVAYIGAFVSFLSLVLV 215
            AE  T   + LRG L + ++IA+++G+L  Y+ G      +  +A+  A    ++ +LV
Sbjct: 135 FAEVAT---SSLRGFLISGTSIAISTGVLAVYILGYILQENWKGIAFFCALFPVVAALLV 191

Query: 216 AMII 219
           A+++
Sbjct: 192 AVMV 195

Source: Nilaparvata lugens

Species: Nilaparvata lugens

Genus: Nilaparvata

Family: Delphacidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91084361|ref|XP_973332.1| PREDICTED: similar to sugar transporter [Tribolium castaneum] gi|270008831|gb|EFA05279.1| hypothetical protein TcasGA2_TC015436 [Tribolium castaneum]

 Score =  129 bits (324), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 69/159 (43%), Positives = 98/159 (61%), Gaps = 14/159 (8%)

Query: 45  RLIYLGLIVILPGVAPGMSFGFPAVALPQMSY------LTIDQASWFASISAITMPIGCL 98
           + + LGL+     +AP MS GF AVALP ++       L  DQASWFASI+++  P GCL
Sbjct: 13  KQVLLGLLTNFSSIAPSMSLGFSAVALPVLTSATNRYALNSDQASWFASIASLATPFGCL 72

Query: 99  LSGPIIDKYGRKSALMITNVPSLCGWLLMA-----TKSDLINLYISRLLSGLSVGLATTP 153
           ++GPI DK+GR+ A+   N+    GWLL+A      +   + L I RLL+GLS GL++ P
Sbjct: 73  VAGPIADKFGRRRAMYCVNIFCFIGWLLIAWAYYWPQHQYVILLIGRLLTGLSTGLSSAP 132

Query: 154 AAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTG 192
           A +Y AE   I + +LRG   TW++IA + G+L+ Y  G
Sbjct: 133 ATIYMAE---IASVNLRGVFCTWNSIAFSLGVLIVYFLG 168

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291461583|dbj|BAI83426.1| sugar transporter 12 [Nilaparvata lugens]

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/159 (42%), Positives = 100/159 (62%), Gaps = 9/159 (5%)

Query: 61  GMSFGFPAVALPQM----SYLTID--QASWFASISAITMPIGCLLSGPIIDKYGRKSALM 114
           GM+FGF AVA+PQ+    S + ID  QASW AS+SA+T PIGC+LSG ++D  GRK  L+
Sbjct: 72  GMTFGFSAVAIPQLEDLSSEIKIDKFQASWIASLSAVTTPIGCILSGYLMDLMGRKRTLL 131

Query: 115 ITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLS 174
           IT +P + GWL++A  + +  +YI RLL GL  G+   PA VY  E    H   LRG L+
Sbjct: 132 ITQIPMIIGWLIIAQATRVEEIYIGRLLVGLGCGMVGAPARVYTGEVTQPH---LRGMLA 188

Query: 175 TWSTIALTSGILLSYLTGAFFWYTTVAYIGAFVSFLSLV 213
             +++ ++ G+ L Y+ GA + +  VA + + V  ++ +
Sbjct: 189 AMASVGVSLGVTLEYMFGALYSWKLVALLSSTVPTVAFI 227

Source: Nilaparvata lugens

Species: Nilaparvata lugens

Genus: Nilaparvata

Family: Delphacidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242013039|ref|XP_002427227.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212511535|gb|EEB14489.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/178 (38%), Positives = 112/178 (62%), Gaps = 14/178 (7%)

Query: 49  LGLIVILPGVAPGMSFGFPAVALPQM------SYLTIDQASWFASISAITMPIGCLLSGP 102
             LI  L  +APGM+ GF AVALP +       ++T ++A+W ASI++I+ P GC+L+G 
Sbjct: 22  FALIANLIAIAPGMNLGFSAVALPSLLNPNSSFHVTEEEATWIASIASISTPFGCILTGS 81

Query: 103 IIDKYGRKSALMITNVPSLCGWLLMA-TKSD--LINLYISRLLSGLSVGLATTPAAVYAA 159
           I++++GRKS L++ N P + GWLL+A  + D  LI +Y  R  +GL+ G+++ P  V++A
Sbjct: 82  ILEQFGRKSTLLLVNFPCILGWLLIAFAQGDYTLIMIYAGRFFTGLATGMSSVPVTVFSA 141

Query: 160 ECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFFW--YTTVAYIGAFVSFLSLVLV 215
           E   I +  LRG   TW++ ++  GILL Y+ G  F   +  +A + A + F+S +++
Sbjct: 142 E---ISSDSLRGMFITWTSSSMALGILLIYILGYLFQDNWRLMAGLSAILPFVSFIMI 196

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345495221|ref|XP_001604742.2| PREDICTED: facilitated trehalose transporter Tret1-like [Nasonia vitripennis]

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/178 (39%), Positives = 107/178 (60%), Gaps = 9/178 (5%)

Query: 44  FRLIYLGLIVILPGVAPGMSFGFPAVALPQM----SYLTID--QASWFASISAITMPIGC 97
           +R I   L+  L  V  GM F + A+A+PQ+    S + ID  Q SW AS+SAI  PIGC
Sbjct: 51  YRQILAALVAQLGTVNTGMVFAYSAIAIPQLKANDSAIPIDDSQQSWIASMSAIGTPIGC 110

Query: 98  LLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVY 157
           L +G ++D  GRK +L++T +P+L GW+L+   SD+  +Y  R  +GL  G+   PA VY
Sbjct: 111 LFTGYLMDVLGRKYSLIVTEIPALLGWILIFYASDVRMIYAGRFFTGLGSGMVGAPARVY 170

Query: 158 AAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFFWYTTVAYIGAFVSFLSLVLV 215
            +E    H   LRG+L+  +++ +++G+L+ Y  GA   + TVA I A V   ++VL+
Sbjct: 171 TSEVTQPH---LRGTLTAIASVGVSTGVLVEYTLGAVLNWKTVAGISAIVPAAAVVLM 225

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340724392|ref|XP_003400566.1| PREDICTED: facilitated trehalose transporter Tret1-like [Bombus terrestris]

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 117/206 (56%), Gaps = 15/206 (7%)

Query: 6   KLLGKTKKSYAHPVIATSSNAADIIDISNGEHTDTPTLFRLIYLGLIVILPGVAPGMSFG 65
           K+    +     P++AT+S ++D     NG  T   ++ R +   ++  L  +  GM+FG
Sbjct: 28  KIQSSNRLEDVQPMLATNSASSDP---ENG-GTVNGSVVRQVLAAVVAQLGTINTGMTFG 83

Query: 66  FPAVALPQM----SYLTI----DQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITN 117
           F A+ALPQ+    S + I     + SW AS+S+I  PIGCL+SG ++D  GRK +L+IT 
Sbjct: 84  FSAIALPQLQEPNSTIPIVEGSSEESWIASMSSIGTPIGCLMSGYMMDVLGRKLSLIITE 143

Query: 118 VPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWS 177
           +P+L GW+L+A  +D+  +Y  R   GL  G+   PA VY  E    H   LRG L+ ++
Sbjct: 144 IPALLGWILIAFATDIHMIYAGRFFVGLGSGMVGAPARVYTGEVTQPH---LRGMLTAFA 200

Query: 178 TIALTSGILLSYLTGAFFWYTTVAYI 203
           +I +++G+L+ YL G+   +   A +
Sbjct: 201 SIGVSTGVLIEYLLGSVLTWNICAAV 226

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350397791|ref|XP_003484994.1| PREDICTED: facilitated trehalose transporter Tret1-like [Bombus impatiens]

 Score =  116 bits (290), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 117/206 (56%), Gaps = 15/206 (7%)

Query: 6   KLLGKTKKSYAHPVIATSSNAADIIDISNGEHTDTPTLFRLIYLGLIVILPGVAPGMSFG 65
           K+    +     P++AT++ ++D     NG   +  ++ R +   ++  L  +  GM+FG
Sbjct: 28  KIQSSNRLEDVQPMLATNNASSDP---ENGRIVNG-SVVRQVLAAVVAQLGTINTGMTFG 83

Query: 66  FPAVALPQM----SYLTI----DQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITN 117
           F A+ALPQ+    S + I     + SW AS+S+I  PIGCL+SG ++D  GRK +L+IT 
Sbjct: 84  FSAIALPQLQEPNSTIPIVEGSSEESWIASMSSIGTPIGCLMSGYMMDVLGRKLSLIITE 143

Query: 118 VPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWS 177
           +P+L GW+L+A  +++  +Y  R   GL  G+   PA VY  E    H   LRG L+ ++
Sbjct: 144 IPALLGWILIAFATNIHMIYAGRFFVGLGSGMVGAPARVYTGEVTQPH---LRGMLTAFA 200

Query: 178 TIALTSGILLSYLTGAFFWYTTVAYI 203
           +I +++G+L+ YL G+   +   A +
Sbjct: 201 SIGVSTGVLIEYLLGSVLTWNICAAV 226

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110762820|ref|XP_624970.2| PREDICTED: facilitated trehalose transporter Tret1-like [Apis mellifera]

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 113/208 (54%), Gaps = 15/208 (7%)

Query: 16  AHPVIATSSNAADIIDISNGEHTDTPTLFRLIYLGLIVILPGVAPGMSFGFPAVALPQMS 75
             PV+A  S   +     NG H+   +  R +   ++  L  +  GM+FGF A+A+PQ+ 
Sbjct: 11  GKPVLAGHSANTNP---ENG-HSVHGSAVRQVLAAVVAQLGTLNTGMAFGFSAIAVPQLQ 66

Query: 76  YLTID--------QASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLM 127
               +        + SW AS+S+I  PIGCL+SG ++D  GRK +L+IT +P+L GW+L+
Sbjct: 67  EPNSNIPIGKGSSEESWIASMSSIGTPIGCLISGYMMDVLGRKRSLIITEIPALLGWILI 126

Query: 128 ATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILL 187
           A  +D+  +Y  R   GL  G+   PA VY  E    H   LRG L+ +++I +++G+L+
Sbjct: 127 ACATDVRMIYAGRFFVGLGSGMVGAPARVYTGEVTQPH---LRGMLTAFASIGVSTGVLI 183

Query: 188 SYLTGAFFWYTTVAYIGAFVSFLSLVLV 215
            Y  G+   +   A I   +   +L+L+
Sbjct: 184 EYFLGSVLTWNVCAAISGILPLAALLLM 211

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
FB|FBgn0034909	533	CG4797 [Drosophila melanogaste	0.881	0.362	0.305	1e-19
FB|FBgn0034045	521	CG8249 [Drosophila melanogaste	0.634	0.266	0.388	1.2e-19
UNIPROTKB|A9ZSY2	502	Tret1 "Facilitated trehalose t	0.936	0.408	0.273	1.8e-18
TAIR|locus:2025132	487	ERDL6 "ERD6-like 6" [Arabidops	0.689	0.310	0.350	5.8e-18
TAIR|locus:2016407	488	AT1G19450 [Arabidopsis thalian	0.689	0.309	0.343	9.6e-18
FB|FBgn0051100	716	CG31100 [Drosophila melanogast	0.698	0.213	0.296	2.1e-17
UNIPROTKB|F1NDA6	482	SLC2A8 "Uncharacterized protei	0.757	0.344	0.293	6.9e-17
FB|FBgn0029932	525	CG4607 [Drosophila melanogaste	0.652	0.272	0.351	1.4e-16
UNIPROTKB|B0WC46	517	Tret1 "Facilitated trehalose t	0.785	0.332	0.302	1.7e-16
UNIPROTKB|A9ZSY3	505	Tret1 "Facilitated trehalose t	0.689	0.299	0.293	4.5e-16

FB|FBgn0034909 CG4797 [Drosophila melanogaster (taxid:7227)]

 Score = 242 (90.2 bits), Expect = 1.0e-19, P = 1.0e-19
 Identities = 62/203 (30%), Positives = 99/203 (48%)

Query:    23 SSNAADIIDISNGEHTDTPTLFRLIYLGLIVILPGVAPGMSFGFPAVALPQM-----SYL 77
             SS     ID  + +  +   +   I     V+L     GM  GF A+ LPQ+     + +
Sbjct:    35 SSRKLSTIDEQDDDAANRRGMMHQILATCAVLLLSAGCGMPIGFSAILLPQLMDNNSTEI 94

Query:    78 TID--QASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLIN 135
              ID    SW AS+ ++  P G LLSGP+ D  GR+  L+++ +P L GW  +A    +  
Sbjct:    95 PIDVETGSWIASVHSLATPFGSLLSGPLADYLGRRRTLILSVIPLLLGWSTLAIAKSIKV 154

Query:   136 LYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF 195
             +  +R L G + G+   P  VY AE       +LR  L     +A +SGIL+ Y  G+  
Sbjct:   155 VIFARFLCGFATGILGGPGQVYIAETA---EPNLRSLLIGAPYVAYSSGILMVYSLGSMM 211

Query:   196 WYTTVAYIGAFVSFLSLVLVAMI 218
             ++ +VA+    +  LS+V ++ I
Sbjct:   212 YWRSVAWCANVLPLLSMVSISFI 234

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0034045 CG8249 [Drosophila melanogaster (taxid:7227)]

 Score = 241 (89.9 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 61/157 (38%), Positives = 92/157 (58%)

Query:    51 LIVILPGV---APGMSFGFPAVALPQMS------YLTIDQASWFASISAITMPIGCLLSG 101
             + VIL  V   + GM+   P   L Q+       +L   QASWFAS++A++ PIG LLSG
Sbjct:    47 IAVILANVGVFSTGMTLAMPTATLHQLKDTTEPVHLNDSQASWFASVNALSAPIGGLLSG 106

Query:   102 PIIDKYGRKSALMITNVPSLCGWLLMATKSD------LINLYISRLLSGLSVGLATTPAA 155
              ++D+ GRK +L++ NV  +  W+L+AT S+         L +SR + G+ +GLA+ P  
Sbjct:   107 FLLDRIGRKKSLIVLNVLIILAWILLATPSESDQNAFFWQLIVSRFMLGVGMGLASAPPG 166

Query:   156 VYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTG 192
             VYAAE I++  T  RGSL   ++I++  GI + Y  G
Sbjct:   167 VYAAE-ISVPKT--RGSLILGTSISVAGGITILYGIG 200

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|A9ZSY2 Tret1 "Facilitated trehalose transporter Tret1" [Apis mellifera ligustica (taxid:7469)]

 Score = 230 (86.0 bits), Expect = 1.8e-18, P = 1.8e-18
 Identities = 59/216 (27%), Positives = 109/216 (50%)

Query:    11 TKKSYAHPVIATSSNAADIIDISNGEHTDTPTLFRLIYLG-LIVILPGVAPGMSFGFPAV 69
             TK++ +   I  + ++ D++     E   +P  + +  L  L V +  +  G S  + + 
Sbjct:     6 TKQTMSSQNIKPAKDSDDVLHTQFKEVKRSPMRYTMQLLAALAVSMASLMIGYSSSYTSP 65

Query:    70 ALPQMS-------YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLC 122
             AL  M         +T+D A W  SI  ++  IG ++ GP I+  GR++ ++ T +P L 
Sbjct:    66 ALVSMRDNTTATFEVTMDMAMWIGSIMPLSALIGGIIGGPCIEYIGRRNTILSTALPFLA 125

Query:   123 GWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALT 182
             GWL +A  +++  + + R + G  VG+A+    VY  E I     ++RGSL    T+   
Sbjct:   126 GWLFIALATNVAMILVGRSICGFCVGVASLSLPVYLGESI---QPEVRGSLGLLPTVFGN 182

Query:   183 SGILLSYLTGAFFWYTTVAYIGAFVSFLSLVLVAMI 218
             SGIL+ +  G +  +  +A +GA +  + L+L+ +I
Sbjct:   183 SGILMCFTAGMYLAWRNLALLGACIPIIFLILMFLI 218

GO:0015574 "trehalose transmembrane transporter activity" evidence=IDA

GO:0015771 "trehalose transport" evidence=IDA

GO:0044459 "plasma membrane part" evidence=IDA

GO:0015767 "lactose transport" evidence=IDA

GO:0015768 "maltose transport" evidence=IDA

GO:0015770 "sucrose transport" evidence=IDA

TAIR|locus:2025132 ERDL6 "ERD6-like 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 55/157 (35%), Positives = 88/157 (56%)

Query:    51 LIVILPGVAPGMSFGFPA---VALPQMSYLTIDQASWFASISAITMPIGCLLSGPIIDKY 107
             LIV L  +  G + G+ +    A+ +   LT+ + S F S+S +   +G + SG I +  
Sbjct:    53 LIVALGPIQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYI 112

Query:   108 GRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNT 167
             GRK +LMI  +P++ GWL ++   D   LY+ RLL G  VG+ +    VY AE I   N 
Sbjct:   113 GRKGSLMIAAIPNIIGWLCISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAE-IAPQN- 170

Query:   168 DLRGSLSTWSTIALTSGILLSYLTGAFFWYTTVAYIG 204
              +RG L + + +++T GI+L+YL G F  +  +A +G
Sbjct:   171 -MRGGLGSVNQLSVTIGIMLAYLLGLFVPWRILAVLG 206

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0010030 "positive regulation of seed germination" evidence=IMP

GO:0042593 "glucose homeostasis" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

TAIR|locus:2016407 AT1G19450 [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 9.6e-18, P = 9.6e-18
 Identities = 54/157 (34%), Positives = 88/157 (56%)

Query:    51 LIVILPGVAPGMSFGFPA---VALPQMSYLTIDQASWFASISAITMPIGCLLSGPIIDKY 107
             LIV L  +  G + G+ +    A+ +   LT+ + S F S+S +   +G + SG I +  
Sbjct:    54 LIVALGPIQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYV 113

Query:   108 GRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNT 167
             GRK +LMI  +P++ GWL ++   D   LY+ RLL G  VG+ +    VY AE   I   
Sbjct:   114 GRKGSLMIAAIPNIIGWLSISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAE---IAPQ 170

Query:   168 DLRGSLSTWSTIALTSGILLSYLTGAFFWYTTVAYIG 204
              +RG+L + + +++T GI+L+YL G F  +  +A +G
Sbjct:   171 TMRGALGSVNQLSVTIGIMLAYLLGLFVPWRILAVLG 207

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

FB|FBgn0051100 CG31100 [Drosophila melanogaster (taxid:7227)]

 Score = 223 (83.6 bits), Expect = 2.1e-17, P = 2.1e-17
 Identities = 51/172 (29%), Positives = 90/172 (52%)

Query:    61 GMSFGFPAVALPQMS------------YLTIDQASWFASISAITMPIGCLLSGPIIDKYG 108
             GM+ GFP + +P +              L  D+ SWF+SI+ I +P+GCL SG +    G
Sbjct:    65 GMTLGFPTIVIPAIQGGEGRSETSGDILLNKDEISWFSSINLICVPLGCLFSGLLTQPLG 124

Query:   109 RKSALMITNVPSLCGWLLM--ATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHN 166
             ++ A+   N+P L  WL+   AT+++  +LY +  L+GL  GL   P   Y AE IT   
Sbjct:   125 KRRAMQFVNLPILAAWLMFHFATRTE--HLYAALCLAGLGGGLMEAPVLTYVAE-IT--E 179

Query:   167 TDLRGSLSTWSTIALTSGILLSYLTGAFFWYTTVAYIGAFVSFLSLVLVAMI 218
                RG LS   T  + +G+ + ++ G+   + +VA + +    ++++++  +
Sbjct:   180 PKYRGILSALGTTCVITGVFIQFILGSLMDWRSVAAVSSAFPVITIIMLCFV 231

GO:0016021 "integral to membrane" evidence=ISS

GO:0015145 "monosaccharide transmembrane transporter activity" evidence=ISS

GO:0015749 "monosaccharide transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|F1NDA6 SLC2A8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 215 (80.7 bits), Expect = 6.9e-17, P = 6.9e-17
 Identities = 52/177 (29%), Positives = 100/177 (56%)

Query:    47 IYLGLIVILPG-VAPGMSFGFPAVALPQMSY-----LTID--QASWFASISAITMPIGCL 98
             +YL     + G ++ G   G+ + A+P++       L +D  QASWF SI  +    G +
Sbjct:    26 LYLATFAAVLGPLSFGFVLGYSSPAIPELRKIDNPKLRLDSNQASWFGSIVTLGAAAGGI 85

Query:    99 LSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYA 158
             L G ++DK GRK +LM+ ++P + G++++ +  ++  LY  R+L+GL+ G+ +    VY 
Sbjct:    86 LGGYLVDKIGRKLSLMLCSIPFVSGYIVIISAQNVWMLYFGRILTGLASGITSLVVPVYI 145

Query:   159 AECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFFWYTTVAYIGAFVSFLSLVLV 215
             +E   I +TD+RG L ++  + + +GIL +Y+ G    +  +A + +F   + L+ +
Sbjct:   146 SE---ISHTDVRGMLGSFVQLMVVTGILGAYIAGLTLKWHWLAVLCSFPPCVMLLFM 199

GO:0001666 "response to hypoxia" evidence=IEA

GO:0005355 "glucose transmembrane transporter activity" evidence=IEA

GO:0005536 "glucose binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0008286 "insulin receptor signaling pathway" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

FB|FBgn0029932 CG4607 [Drosophila melanogaster (taxid:7227)]

 Score = 213 (80.0 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 57/162 (35%), Positives = 87/162 (53%)

Query:    46 LIYLGLIVILPGVAPGMSFGFPAVALPQMS------YLTIDQASWFASISAITMPIGCLL 99
             +++LG   +L     GM    PAV L Q+       +L  D++SWFAS   +  P+G LL
Sbjct:    48 MVFLGNSGVL---GSGMVVSMPAVTLNQLHDETQPFWLNKDESSWFASNQNMACPLGGLL 104

Query:   100 SGPIIDKYGRKSALMITNVPSLCGWLLMATK---SDLINLYISRLLS----GLSVGLATT 152
                 +D+ GRK  +++TN+  L GW+L+ T    SD   +Y   LL     G+ +G+  +
Sbjct:   105 VSYFLDRIGRKHTILLTNLIGLIGWILLVTSFMHSDRDMIYYQMLLGRCFGGIMIGMFVS 164

Query:   153 PAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAF 194
             P  VY+AE I++    +RG L   +++ L SGILL Y  G F
Sbjct:   165 PVGVYSAE-ISLPK--IRGRLILGTSLGLASGILLMYCLGYF 203

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|B0WC46 Tret1 "Facilitated trehalose transporter Tret1" [Culex quinquefasciatus (taxid:7176)]

 Score = 212 (79.7 bits), Expect = 1.7e-16, P = 1.7e-16
 Identities = 55/182 (30%), Positives = 93/182 (51%)

Query:    44 FRLIYLGLIVILPGVAPGMSFGFPAVALPQM------SYLTIDQA-SWFASISAITMPIG 96
             F  +   L V L  +  G S  + + AL  M      S+   DQ+ SW   I  +   +G
Sbjct:    54 FSQVLAALSVSLGSMVVGFSSAYTSPALVSMKDRNITSFEVTDQSGSWVGGIMPLAGLVG 113

Query:    97 CLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAV 156
              +L GP+I+  GRK+ ++ T  P +  WLL+A  + +  + + R LSG SVG+A+    V
Sbjct:   114 GILGGPLIEYLGRKNTILATATPFIISWLLIACATHVAMVLVGRALSGFSVGVASLSLPV 173

Query:   157 YAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFFWYTTVAYIGAFVSFLSLVLVA 216
             Y  E +     ++RG+L    T     GILL ++ G +  ++ +A++GA +    L+L+ 
Sbjct:   174 YLGETV---QPEVRGTLGLLPTAFGNIGILLCFVAGNYMDWSELAFLGATLPVPFLILMF 230

Query:   217 MI 218
             +I
Sbjct:   231 LI 232

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

GO:0044459 "plasma membrane part" evidence=ISS

UNIPROTKB|A9ZSY3 Tret1 "Facilitated trehalose transporter Tret1" [Bombyx mori (taxid:7091)]

 Score = 208 (78.3 bits), Expect = 4.5e-16, P = 4.5e-16
 Identities = 47/160 (29%), Positives = 89/160 (55%)

Query:    61 GMSFGF--PAVALPQMSY-LTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITN 117
             G S G+  PAV    ++  +T ++ +W   +  +   +G ++ GP+I+  GRK  +M T 
Sbjct:    66 GFSSGYTSPAVLTMNITLDITKEEITWVGGLMPLAALVGGIVGGPLIEYLGRKKTIMGTA 125

Query:   118 VPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWS 177
             VP   GW+L+A   +++ ++  R++ G+ VG+ +    VY  E I     ++RG+L    
Sbjct:   126 VPFTIGWMLIANAINVVMVFAGRVICGVCVGIVSLAFPVYIGETI---QPEVRGALGLLP 182

Query:   178 TIALTSGILLSYLTGAFFWYTTVAYIGAFVS---FLSLVL 214
             T    +GILL++L G++  ++ +A+ GA +    FL ++L
Sbjct:   183 TAFGNTGILLAFLVGSYLDWSNLAFFGAAIPVPFFLLMIL 222

GO:0015574 "trehalose transmembrane transporter activity" evidence=IDA

GO:0015771 "trehalose transport" evidence=IDA

GO:0044459 "plasma membrane part" evidence=IDA

GO:0015767 "lactose transport" evidence=IDA

GO:0015768 "maltose transport" evidence=IDA

GO:0015770 "sucrose transport" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	219
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	4e-16
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	2e-11
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-08
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-06
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	2e-06
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	2e-05
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	1e-04
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	4e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	0.002
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	0.002
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	0.003

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 75.8 bits (187), Expect = 4e-16
 Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 5/128 (3%)

Query: 73  QMSYLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLM--ATK 130
                +   +    SI ++   IG L +G + D++GRK +L+I NV  + G LL   A  
Sbjct: 39  GACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKG 98

Query: 131 SDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYL 190
                L + R++ GL VG  +    +Y +E   I    LRG+L +   + +T GIL++ +
Sbjct: 99  KSFYMLIVGRVIVGLGVGGISVLVPMYISE---IAPKKLRGALGSLYQLGITFGILVAAI 155

Query: 191 TGAFFWYT 198
            G      
Sbjct: 156 IGLGLNKY 163

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 16/154 (10%)

Query: 75  SYLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLM---ATKS 131
              +        SI  +   IG L +G + D++GRK +L+I  +  + G +LM   A   
Sbjct: 66  DSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFAL 125

Query: 132 DLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLT 191
            +  L + R+L G+ VG+A+    +Y +E   I    LRG+L++   +A+T GIL++Y  
Sbjct: 126 SVEMLIVGRVLLGIGVGIASALVPMYLSE---IAPKALRGALTSLYQLAITFGILVAYGF 182

Query: 192 G--AFFWYTTVAY--------IGAFVSFLSLVLV 215
           G        T+ +        I A + FL L  +
Sbjct: 183 GSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFL 216

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 4/163 (2%)

Query: 61  GMSFGFPAVALPQMSY---LTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITN 117
           G+  G  + ALP ++    L+  QA    S  ++   +G LL+G + D++GR+  L++  
Sbjct: 12  GLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGL 71

Query: 118 VPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSL-STW 176
           +    G LL+A  S L  L + R L GL  G     AA   AE            L S  
Sbjct: 72  LLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAG 131

Query: 177 STIALTSGILLSYLTGAFFWYTTVAYIGAFVSFLSLVLVAMII 219
             +    G LL  L      +  +  I A +  L  +L+  ++
Sbjct: 132 FGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 1/144 (0%)

Query: 77  LTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINL 136
           ++  +     +  ++   +   L+G + D++GR+  L+I  +    G LL+   S L  L
Sbjct: 29  ISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLL 88

Query: 137 YISRLLSGLSVGLATTPAAVYAAECITIHNTDLR-GSLSTWSTIALTSGILLSYLTGAFF 195
            + R+L GL  G     AA   A+           G LS    +    G LL  L  + F
Sbjct: 89  LVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLF 148

Query: 196 WYTTVAYIGAFVSFLSLVLVAMII 219
            +     I A ++ L+ VL A+++
Sbjct: 149 GWRAAFLILAILALLAAVLAALLL 172

Length = 346

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 42/179 (23%), Positives = 70/179 (39%), Gaps = 1/179 (0%)

Query: 40  TPTLFRLIYLGLIVILPGVAPGMSFGFPAVALPQMSYLTIDQASWFASISAITMPIGCLL 99
           +   +R I L  +++L       + GF A A+     L   Q  +  S   I M  G L 
Sbjct: 12  SRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALF 71

Query: 100 SGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAA 159
            GP+ D+ GR+  L+ + +      LL A  +++  L I R L+GL +G          +
Sbjct: 72  FGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVS 131

Query: 160 E-CITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFFWYTTVAYIGAFVSFLSLVLVAM 217
           E           G +     I    G  L+      F + ++ Y+G     L L+L+  
Sbjct: 132 EYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMR 190

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 25/121 (20%)

Query: 94  PIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLIN---------------LYI 138
           P+G ++ G   D+ GRK  L+IT        L+M   + LI                L +
Sbjct: 49  PLGAIVFGHFGDRIGRKKTLVIT-------LLMMGIGTLLIGLLPSYATIGIWAPILLLL 101

Query: 139 SRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFFWYT 198
           +RL+ G S+G     AA+Y AE         RG   ++  +    G+LL+ LT     Y 
Sbjct: 102 ARLIQGFSLGGEWGGAALYLAEYAPPGK---RGFYGSFQQVGAPVGLLLAALTVLLLSYL 158

Query: 199 T 199
            
Sbjct: 159 L 159

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 16/118 (13%)

Query: 85  FASISA-ITMPIGCLLSGPIIDKYGRKSAL-------MITNVPSLCGWLLMATKSD---- 132
           F   SA I   IG  L G   +++GR+ +L        I+ + S        +       
Sbjct: 59  FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTG 118

Query: 133 -LINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSY 189
            +    I R++ G+ VGLA+  + +Y AE   I    +RG L +++  A+  G L+ Y
Sbjct: 119 YVPEFVIYRIIGGIGVGLASMLSPMYIAE---IAPAHIRGKLVSFNQFAIIFGQLVVY 173

Length = 479

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 40.3 bits (94), Expect = 4e-04
 Identities = 27/84 (32%), Positives = 42/84 (50%)

Query: 77  LTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINL 136
           LT  + ++ A+ + I  P G  L G + DK+GRK  +M + V    G  L    S +I L
Sbjct: 50  LTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIML 109

Query: 137 YISRLLSGLSVGLATTPAAVYAAE 160
            +SR + G+ +      A+ YA E
Sbjct: 110 TLSRFIVGMGMAGEYACASTYAVE 133

Length = 426

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 42/179 (23%), Positives = 76/179 (42%), Gaps = 2/179 (1%)

Query: 43  LFRLIYLGLIVILPGVAPGMSFGFPAVALPQMSYLTIDQASWFASISAITMPIGCLLSGP 102
           L  L+ L L   L          +  + L ++  L+  +A    S+  +   +G LL G 
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGL 233

Query: 103 IIDKYGRKSALMITNVP-SLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAEC 161
           + D+ GR+  L++  +  +  G LL+A    L  L ++ LL G  +G A       A+E 
Sbjct: 234 LSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASEL 293

Query: 162 ITIHNTDLRGSL-STWSTIALTSGILLSYLTGAFFWYTTVAYIGAFVSFLSLVLVAMII 219
                      L +T+ ++    G LL+ L      Y  V  I A ++ L+ +L+ ++ 
Sbjct: 294 APPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 7/128 (5%)

Query: 77  LTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINL 136
           LT   A+   S + I+   G L+ G   D+YGR+  ++ + V    G L        I +
Sbjct: 44  LTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITM 103

Query: 137 YISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFFW 196
           +I+RL+ G+ +G     +A Y  E    H   LR   S      L SG  +  +  A  +
Sbjct: 104 FIARLVIGIGMGGEYGSSAAYVIESWPKH---LRNKASGL----LISGYAVGAVVAAQVY 156

Query: 197 YTTVAYIG 204
              V   G
Sbjct: 157 SLVVPVWG 164

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 28/137 (20%), Positives = 49/137 (35%), Gaps = 2/137 (1%)

Query: 83  SWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLL 142
               +  A+   I   LSG + D++GRK  L++     +    + A  S++  L I+R L
Sbjct: 1   GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60

Query: 143 SGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFFWYTTVAY 202
            G     A    A   A+           +L   S       +L   L G    +     
Sbjct: 61  QGFGAAFALVAGAALIADIYPPEE--RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRA 118

Query: 203 IGAFVSFLSLVLVAMII 219
              F++ L+L    ++ 
Sbjct: 119 PFLFLAILALAAFILLA 135

Length = 141

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	219
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.89
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.89
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.88
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.88
PRK11663	434	regulatory protein UhpC; Provisional	99.87
PRK03545	390	putative arabinose transporter; Provisional	99.87
KOG1330|consensus	493		99.87
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.86
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.86
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.86
TIGR00891	405	2A0112 putative sialic acid transporter.	99.86
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.85
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.85
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.85
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.85
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.84
PRK12307	426	putative sialic acid transporter; Provisional	99.84
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.84
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.83
PRK10642	490	proline/glycine betaine transporter; Provisional	99.83
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.83
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.83
PLN00028	476	nitrate transmembrane transporter; Provisional	99.83
PRK03699	394	putative transporter; Provisional	99.83
PRK10091	382	MFS transport protein AraJ; Provisional	99.83
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.82
PRK10504	471	putative transporter; Provisional	99.82
KOG0254|consensus	513		99.82
PRK09705	393	cynX putative cyanate transporter; Provisional	99.82
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.82
PRK03893	496	putative sialic acid transporter; Provisional	99.81
TIGR00893	399	2A0114 d-galactonate transporter.	99.81
TIGR00895	398	2A0115 benzoate transport.	99.81
TIGR00898	505	2A0119 cation transport protein.	99.81
TIGR00900	365	2A0121 H+ Antiporter protein.	99.81
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.81
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.81
PRK09952	438	shikimate transporter; Provisional	99.81
PRK05122	399	major facilitator superfamily transporter; Provisi	99.8
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.8
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.8
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.8
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.79
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.79
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.79
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.79
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.78
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.78
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.78
PRK15075	434	citrate-proton symporter; Provisional	99.78
PRK10054	395	putative transporter; Provisional	99.78
PRK12382	392	putative transporter; Provisional	99.78
PRK10133	438	L-fucose transporter; Provisional	99.78
PRK11043	401	putative transporter; Provisional	99.78
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.78
PRK09874	408	drug efflux system protein MdtG; Provisional	99.78
KOG0255|consensus	521		99.77
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.76
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.76
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.76
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.75
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.75
PRK03633	381	putative MFS family transporter protein; Provision	99.75
KOG2533|consensus	495		99.75
KOG0252|consensus	538		99.73
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.73
TIGR00805	633	oat sodium-independent organic anion transporter.	99.73
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.73
PTZ00207	591	hypothetical protein; Provisional	99.72
KOG3764|consensus	464		99.71
KOG0569|consensus	485		99.7
KOG2532|consensus	466		99.7
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.7
PRK10489	417	enterobactin exporter EntS; Provisional	99.7
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.7
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.69
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.68
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.68
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.67
KOG2615|consensus	451		99.66
PRK15011	393	sugar efflux transporter B; Provisional	99.65
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.64
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.63
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.63
PRK12382	392	putative transporter; Provisional	99.62
TIGR00893	399	2A0114 d-galactonate transporter.	99.62
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.61
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.61
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.6
PRK11010	491	ampG muropeptide transporter; Validated	99.6
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.59
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.59
PRK15011	393	sugar efflux transporter B; Provisional	99.59
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.59
PRK09528	420	lacY galactoside permease; Reviewed	99.59
PRK11902	402	ampG muropeptide transporter; Reviewed	99.58
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.58
TIGR00901	356	2A0125 AmpG-related permease.	99.57
PRK05122	399	major facilitator superfamily transporter; Provisi	99.57
PRK10642	490	proline/glycine betaine transporter; Provisional	99.56
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.56
PRK09952	438	shikimate transporter; Provisional	99.55
KOG2504|consensus	509		99.55
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.54
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.54
TIGR00891	405	2A0112 putative sialic acid transporter.	99.54
PRK03699	394	putative transporter; Provisional	99.53
PRK09874	408	drug efflux system protein MdtG; Provisional	99.53
KOG0253|consensus	528		99.51
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.51
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.51
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.51
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.5
PRK03545	390	putative arabinose transporter; Provisional	99.5
PRK03633	381	putative MFS family transporter protein; Provision	99.5
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.5
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.49
TIGR00895	398	2A0115 benzoate transport.	99.48
PRK10489	417	enterobactin exporter EntS; Provisional	99.48
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.48
PRK09528	420	lacY galactoside permease; Reviewed	99.47
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.46
KOG2325|consensus	488		99.45
PRK11663	434	regulatory protein UhpC; Provisional	99.45
TIGR00898	505	2A0119 cation transport protein.	99.45
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.45
PRK03893	496	putative sialic acid transporter; Provisional	99.45
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.43
PRK09705	393	cynX putative cyanate transporter; Provisional	99.43
KOG0569|consensus	485		99.42
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.42
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.42
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.42
PRK15075	434	citrate-proton symporter; Provisional	99.42
TIGR00900	365	2A0121 H+ Antiporter protein.	99.42
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.41
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.4
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.39
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.39
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.37
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.37
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.35
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.35
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.35
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.34
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.34
PRK11010	491	ampG muropeptide transporter; Validated	99.34
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.34
PRK12307	426	putative sialic acid transporter; Provisional	99.33
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.32
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.32
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.31
PRK10504	471	putative transporter; Provisional	99.31
KOG0253|consensus	528		99.3
PRK10091	382	MFS transport protein AraJ; Provisional	99.3
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.27
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.27
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.26
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.25
PLN00028	476	nitrate transmembrane transporter; Provisional	99.25
PRK10054	395	putative transporter; Provisional	99.25
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.25
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.24
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.24
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.23
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.23
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.23
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.23
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.22
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.21
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.21
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.21
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.21
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.2
PF13347	428	MFS_2: MFS/sugar transport protein	99.2
KOG2504|consensus	509		99.16
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.16
TIGR00901	356	2A0125 AmpG-related permease.	99.16
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.16
PRK11902	402	ampG muropeptide transporter; Reviewed	99.16
KOG2563|consensus	480		99.16
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.15
PRK10133	438	L-fucose transporter; Provisional	99.14
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.13
PRK09848	448	glucuronide transporter; Provisional	99.12
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.11
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.1
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.09
PRK09669	444	putative symporter YagG; Provisional	99.06
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.05
PRK10429	473	melibiose:sodium symporter; Provisional	99.03
KOG4686|consensus	459		99.0
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.97
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.96
COG0477	338	ProP Permeases of the major facilitator superfamil	98.94
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.93
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.93
KOG2532|consensus	466		98.92
PRK11043	401	putative transporter; Provisional	98.91
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.9
PRK09669	444	putative symporter YagG; Provisional	98.9
PRK10429	473	melibiose:sodium symporter; Provisional	98.88
PF13347	428	MFS_2: MFS/sugar transport protein	98.86
KOG3764|consensus	464		98.85
COG2211	467	MelB Na+/melibiose symporter and related transport	98.83
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.83
PRK11462	460	putative transporter; Provisional	98.8
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.8
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.8
KOG3762|consensus	618		98.79
KOG0252|consensus	538		98.79
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.79
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.78
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.77
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.75
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.68
COG2211	467	MelB Na+/melibiose symporter and related transport	98.68
PRK11462	460	putative transporter; Provisional	98.66
KOG0254|consensus	513		98.65
KOG2816|consensus	463		98.63
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.61
PRK09848	448	glucuronide transporter; Provisional	98.56
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.52
KOG0637|consensus	498		98.49
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.45
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.43
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.42
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.4
KOG4686|consensus	459		98.4
KOG3626|consensus	735		98.39
KOG2615|consensus	451		98.34
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.33
PF12832	77	MFS_1_like: MFS_1 like family	98.31
KOG2533|consensus	495		98.25
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.22
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.21
KOG2816|consensus	463		98.19
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.18
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.17
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	98.12
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.06
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.0
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.0
PTZ00207	591	hypothetical protein; Provisional	97.99
KOG0255|consensus	521		97.95
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.8
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.66
KOG1237|consensus	571		97.5
PRK03612	521	spermidine synthase; Provisional	97.47
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.39
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.36
KOG4332|consensus	454		97.3
KOG1330|consensus	493		97.15
KOG3098|consensus	461		97.08
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	97.05
KOG3574|consensus	510		97.02
KOG3098|consensus	461		96.79
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	96.6
KOG3762|consensus	618		96.53
KOG2563|consensus	480		96.47
KOG1479|consensus	406		96.03
KOG2325|consensus	488		95.98
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	95.8
COG3202	509	ATP/ADP translocase [Energy production and convers	95.38
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	94.82
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	94.78
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	94.29
TIGR00805	633	oat sodium-independent organic anion transporter.	94.21
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	94.05
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	93.04
KOG3880|consensus	409		92.71
KOG4332|consensus	454		89.32
KOG0637|consensus	498		88.94
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	88.8
KOG3810|consensus	433		88.09
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	87.9
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	86.5
KOG3097|consensus	390		86.35
COG1288	481	Predicted membrane protein [Function unknown]	83.15
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	82.26
COG4262	508	Predicted spermidine synthase with an N-terminal m	80.11

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.89  E-value=5.4e-22  Score=161.53  Aligned_cols=169  Identities=13%  Similarity=0.037  Sum_probs=147.4

Q ss_pred             HHHHHHHHHHhhhhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHH
Q psy13786         46 LIYLGLIVILPGVAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLC  122 (219)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~  122 (219)
                      ++.....+.+.++.+.++....+...|.+.   |.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++..+
T Consensus         6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~   85 (412)
T TIGR02332         6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGI   85 (412)
T ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHH
Confidence            344555566666677777777776666554   89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh-------
Q psy13786        123 GWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF-------  195 (219)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-------  195 (219)
                      +.+++++++|++.+++.|++.|++.+...+....++.|++|++   +|++.+++++....+|..+++.+++.+       
T Consensus        86 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~---~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  162 (412)
T TIGR02332        86 ASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAY---FRARANALFMIAMPVTMALGLILSGYILALDGLM  162 (412)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            9999999999999999999999999999898889999999999   999999999999999999998887643       


Q ss_pred             ---hhHHHHHHHHHHHHHHHHHHHh
Q psy13786        196 ---WYTTVAYIGAFVSFLSLVLVAM  217 (219)
Q Consensus       196 ---~w~~~~~~~~~~~~~~~~~~~~  217 (219)
                         +||+.|++.++..++..++.++
T Consensus       163 ~~~gwr~~f~~~~~~~l~~~~~~~~  187 (412)
T TIGR02332       163 ALKGWQWLFLLEGFPSVILGVMTWF  187 (412)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHhh
Confidence               8999999988887766555543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.89  E-value=2.7e-22  Score=171.64  Aligned_cols=170  Identities=19%  Similarity=0.188  Sum_probs=149.1

Q ss_pred             hHHHHHHHHHHHHhhhhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHH
Q psy13786         43 LFRLIYLGLIVILPGVAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVP  119 (219)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~  119 (219)
                      .++++.+.+++.++.+..+++....+..+|.+.   |++..+.+++.+++.++.+++++++|+++||+|||++++++.++
T Consensus       162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil  241 (742)
T TIGR01299       162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSV  241 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            345667777777888888888887787888775   89999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----
Q psy13786        120 SLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----  195 (219)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----  195 (219)
                      .+++.++++++++++.++++|++.|++.++..+....++.|++|++   +|++.+++.+++..+|..+++.++..+    
T Consensus       242 ~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~---~Rg~~~g~~~~~~~iG~ila~~la~~il~~~  318 (742)
T TIGR01299       242 NGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQE---KRGEHLSWLCMFWMIGGIYAAAMAWAIIPHY  318 (742)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999   999999999999999999988765432    


Q ss_pred             -------------hhHHHHHHHHHHHHHHHHHH
Q psy13786        196 -------------WYTTVAYIGAFVSFLSLVLV  215 (219)
Q Consensus       196 -------------~w~~~~~~~~~~~~~~~~~~  215 (219)
                                   +||+.+++.++++++.++..
T Consensus       319 G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~  351 (742)
T TIGR01299       319 GWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGAL  351 (742)
T ss_pred             cchhccccccccccHHHHHHHHHHHHHHHHHHH
Confidence                         58999888877766655443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.88  E-value=3e-21  Score=152.53  Aligned_cols=169  Identities=22%  Similarity=0.225  Sum_probs=154.3

Q ss_pred             HHHHHHHHHhhhhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHH
Q psy13786         47 IYLGLIVILPGVAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCG  123 (219)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~  123 (219)
                      +...+.+.++.|..+.........+|++.   |.|..+.|+..+.+.++..+++++...+.||+.||++++....++.++
T Consensus        12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~   91 (394)
T COG2814          12 WLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVS   91 (394)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence            34445555666777777777788888887   999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHH
Q psy13786        124 WLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTT  199 (219)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~  199 (219)
                      .+++++++|++.+.+.|++.|+..|.+++...+...+..|++   +|++++++...+..++..+|.+++.++    |||+
T Consensus        92 n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~---~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~  168 (394)
T COG2814          92 NLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPG---KRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRA  168 (394)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc---chhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHH
Confidence            999999999999999999999999999999999999999999   999999999999999999999888888    9999


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q psy13786        200 VAYIGAFVSFLSLVLVAMI  218 (219)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~  218 (219)
                      .|+..+.++++..+..+..
T Consensus       169 ~F~~ia~l~ll~~~~~~~~  187 (394)
T COG2814         169 TFLAIAVLALLALLLLWKL  187 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9999999998888776653

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.88  E-value=2.6e-21  Score=161.00  Aligned_cols=169  Identities=17%  Similarity=0.145  Sum_probs=150.2

Q ss_pred             HHHHHHHHHHhhhhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHH
Q psy13786         46 LIYLGLIVILPGVAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLC  122 (219)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~  122 (219)
                      ++.....+.+..+....+.+..+..+|.+.   |.+.++.+|+.+.+.++..++.++.|+++||+|||+++.++.++..+
T Consensus         4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~   83 (495)
T PRK14995          4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGL   83 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            455677777888888888988888888887   88889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhhhhhhhcc-CCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hh
Q psy13786        123 GWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECI-TIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WY  197 (219)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w  197 (219)
                      +.+.+++++|++.++++|+++|++.+...+.....+.+.+ |++   +|++++++......+|..++|.+++.+    +|
T Consensus        84 ~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~---~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gw  160 (495)
T PRK14995         84 ASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEK---QRNMALGVWAAVGSGGAAFGPLVGGILLEHFYW  160 (495)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh
Confidence            9999999999999999999999999988887777777765 667   899999999999999999999999988    99


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q psy13786        198 TTVAYIGAFVSFLSLVLVAM  217 (219)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~  217 (219)
                      ||.|++...+.++..++.++
T Consensus       161 r~~f~i~~~~~~~~~~l~~~  180 (495)
T PRK14995        161 GSVFLINVPIVLVVMGLTAR  180 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999987776666555443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.87  E-value=4.7e-21  Score=157.01  Aligned_cols=164  Identities=15%  Similarity=0.074  Sum_probs=140.6

Q ss_pred             HHHHHHHhhhhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHH
Q psy13786         49 LGLIVILPGVAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWL  125 (219)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~  125 (219)
                      ......+..+...++...++...|.+.   |.++.+.+++.+.+.++..+++++.|++.||+|||+++.++.++..++.+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~  103 (434)
T PRK11663         24 ILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINI  103 (434)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHH
Confidence            333344444555555555556666665   89999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHH
Q psy13786        126 LMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVA  201 (219)
Q Consensus       126 ~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~  201 (219)
                      +.+++++++.+.+.|++.|++.|...+....++.|++|++   +|++++++.+.+..+|..++|.+.+.+    +||+.|
T Consensus       104 ~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~---~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f  180 (434)
T PRK11663        104 LFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRT---ERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGM  180 (434)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence            9999999999999999999999988899999999999999   999999999999999999999888876    999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy13786        202 YIGAFVSFLSLVLV  215 (219)
Q Consensus       202 ~~~~~~~~~~~~~~  215 (219)
                      ++.+++.++..+..
T Consensus       181 ~~~~i~~~~~~~~~  194 (434)
T PRK11663        181 MIAGIIAIVVGLFL  194 (434)
T ss_pred             HHHHHHHHHHHHHH
Confidence            98887766554433

>PRK03545 putative arabinose transporter; Provisional

Probab=99.87  E-value=4.1e-21  Score=155.31  Aligned_cols=148  Identities=15%  Similarity=0.107  Sum_probs=133.3

Q ss_pred             ccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy13786         66 FPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLL  142 (219)
Q Consensus        66 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  142 (219)
                      ...+.+|.+.   |.++.+.++..+.+.++..+++++.|++.||+|||+++..+.++..++++.+.+++|++.+++.|++
T Consensus        27 ~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~  106 (390)
T PRK03545         27 VPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIG  106 (390)
T ss_pred             HHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            3344556555   9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHH
Q psy13786        143 SGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       143 ~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~  216 (219)
                      .|++.+...+...+++.|++|++   +|++++++...+..+|..++|++++.+    +||+.|++.++++++..+..+
T Consensus       107 ~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~  181 (390)
T PRK03545        107 IAFAHAIFWSITASLAIRVAPAG---KKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLI  181 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHhCChh---hhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence            99999888888999999999999   999999999999999999999998876    999999998887776655443

>KOG1330|consensus

Probab=99.87  E-value=1.6e-22  Score=159.99  Aligned_cols=170  Identities=15%  Similarity=0.146  Sum_probs=154.8

Q ss_pred             HHHHHHHHHHhhhhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHH
Q psy13786         46 LIYLGLIVILPGVAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLC  122 (219)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~  122 (219)
                      ..+......+...++..+.+.....++..+   |+++...|++++.+.+.+.+++|++|+++||+.||+++.+|..++.+
T Consensus        31 ~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~  110 (493)
T KOG1330|consen   31 PTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTL  110 (493)
T ss_pred             chHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHH
Confidence            344455556667777888887777777766   99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh-----hh
Q psy13786        123 GWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF-----WY  197 (219)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w  197 (219)
                      +.+.+++++.+|++.++|.+.|+|.+...++.+++++|.+|.+   +|++++++.+.+..+|+.+|.+.+..+     .|
T Consensus       111 Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~---~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~W  187 (493)
T KOG1330|consen  111 AVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDD---KRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWW  187 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcch---hhhHHHHHhhhhcccccceeEEeeeeeccCccce
Confidence            9999999999999999999999999999999999999999999   999999999999999999998888877     59


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh
Q psy13786        198 TTVAYIGAFVSFLSLVLVAMI  218 (219)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~  218 (219)
                      ||.|+..+++.++..++..++
T Consensus       188 r~af~~~avl~vi~~~L~~~f  208 (493)
T KOG1330|consen  188 RWAFRGSAVLGVIVGLLVFLF  208 (493)
T ss_pred             EEEEEeehHHHHHHHHHHHhh
Confidence            999999999999888877654

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.86  E-value=2.4e-20  Score=151.05  Aligned_cols=143  Identities=16%  Similarity=0.146  Sum_probs=130.2

Q ss_pred             cchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q psy13786         69 VALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGL  145 (219)
Q Consensus        69 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~  145 (219)
                      +.+|.+.   |.++++.++..+...++..+++++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|++.|+
T Consensus        41 ~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~  120 (394)
T PRK10213         41 SLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGL  120 (394)
T ss_pred             hhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHH
Confidence            3445444   8999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHH
Q psy13786        146 SVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVL  214 (219)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~  214 (219)
                      +.+...+....++.|++|++   +|++++++...+.++|..++|.+++.+    +||+.|++.++++++..+.
T Consensus       121 ~~g~~~~~~~~~i~~~~~~~---~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~  190 (394)
T PRK10213        121 ALGGFWAMSASLTMRLVPPR---TVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFW  190 (394)
T ss_pred             hhHHHHHHHHHHHHHHcCHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999   999999999999999999999999887    9999999887766655443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.86  E-value=2.1e-20  Score=154.02  Aligned_cols=171  Identities=27%  Similarity=0.365  Sum_probs=141.7

Q ss_pred             chHHHHHHHHHHHHhhhhhhccccccccchhhcc---cCC--------hhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCc
Q psy13786         42 TLFRLIYLGLIVILPGVAPGMSFGFPAVALPQMS---YLT--------IDQASWFASISAITMPIGCLLSGPIIDKYGRK  110 (219)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--------~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr  110 (219)
                      +.++.+...+.+.+..+...++.....+.++...   +.+        ..+.+++.+.+.++..+++++.|+++||+|||
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr  101 (481)
T TIGR00879        22 TYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRK  101 (481)
T ss_pred             ccHHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhH
Confidence            3455555566666666777777777776666554   444        88999999999999999999999999999999


Q ss_pred             hhhhHhhHHHHHHHHHHHhh---hhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHH
Q psy13786        111 SALMITNVPSLCGWLLMATK---SDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILL  187 (219)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  187 (219)
                      +++..+.++..++.+++...   .+++.+++.|++.|++.+...+....++.|++|++   +|++++++.+.+..+|..+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~G~~~  178 (481)
T TIGR00879       102 KSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKA---LRGALTSLYQLAITFGILV  178 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChh---hhhhhhhHHHHHHHHHHHH
Confidence            99999999999988888553   34558899999999999999999999999999999   9999999999999999999


Q ss_pred             HHHHh---hhh----hhHHHHHHHHHHHHHHHHHH
Q psy13786        188 SYLTG---AFF----WYTTVAYIGAFVSFLSLVLV  215 (219)
Q Consensus       188 ~~~~~---~~~----~w~~~~~~~~~~~~~~~~~~  215 (219)
                      ++.++   ...    +||+.|++.++..++..+..
T Consensus       179 ~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~  213 (481)
T TIGR00879       179 AYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGL  213 (481)
T ss_pred             HHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHH
Confidence            99998   443    89999999666655554433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.86  E-value=3.8e-20  Score=150.29  Aligned_cols=170  Identities=25%  Similarity=0.333  Sum_probs=148.2

Q ss_pred             hHHHHHHHHHHHHhhhhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHH
Q psy13786         43 LFRLIYLGLIVILPGVAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVP  119 (219)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~  119 (219)
                      .++++.....+.+..+.++++....+...|.+.   |.++.+.+++.+...++..+++++.|+++||+|||+++..+.++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   89 (406)
T PRK11551         10 SSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVAL   89 (406)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence            345666677777777777877777777777665   89999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----
Q psy13786        120 SLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----  195 (219)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----  195 (219)
                      ..++.+++.++++++.+.+.|++.|++.+...+....++.|.+|++   +|++++++.+.+..+|..+++.++..+    
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  166 (406)
T PRK11551         90 FGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPR---LRGTAVSLMYCGVPFGGALASVIGVLAAGDA  166 (406)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            9998888889999999999999999999999999999999999999   999999999999999999999888666    


Q ss_pred             hhHHHHHHHHHHHHHHHHHH
Q psy13786        196 WYTTVAYIGAFVSFLSLVLV  215 (219)
Q Consensus       196 ~w~~~~~~~~~~~~~~~~~~  215 (219)
                      +|++.|++.++..++..+..
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~  186 (406)
T PRK11551        167 AWRHIFYVGGVGPLLLVPLL  186 (406)
T ss_pred             CHHHHHHHHHHHHHHHHHHH
Confidence            89999988776655554433

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.86  E-value=2.5e-20  Score=150.77  Aligned_cols=166  Identities=21%  Similarity=0.236  Sum_probs=145.9

Q ss_pred             HHHHHHHHHHHHhhhhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHH
Q psy13786         44 FRLIYLGLIVILPGVAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPS  120 (219)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~  120 (219)
                      ++++.....+.+..+.++++.....+..|.+.   |.++.+.+++.+...++..+++++.|+++||+|||+++..+.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~   87 (405)
T TIGR00891         8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLF   87 (405)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            34455556666777777777777777777776   899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----h
Q psy13786        121 LCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----W  196 (219)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~  196 (219)
                      +++.+++.++++++.+++.|++.|++.+...+....++.|.+|++   +|+++.++.+.+..+|..+++.++..+    +
T Consensus        88 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~  164 (405)
T TIGR00891        88 SAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKH---LRNKASGLLISGYAVGAVVAAQVYSLVVPVWG  164 (405)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999   999999999999999999999888776    4


Q ss_pred             --hHHHHHHHHHHHHHHH
Q psy13786        197 --YTTVAYIGAFVSFLSL  212 (219)
Q Consensus       197 --w~~~~~~~~~~~~~~~  212 (219)
                        ||+.|++.++..++..
T Consensus       165 ~~w~~~f~~~~~~~~~~~  182 (405)
T TIGR00891       165 DGWRALFFISILPIIFAL  182 (405)
T ss_pred             ccHHHHHHHHHHHHHHHH
Confidence              9999987665555443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.85  E-value=6.3e-20  Score=151.99  Aligned_cols=169  Identities=23%  Similarity=0.329  Sum_probs=141.0

Q ss_pred             HHHHHHHHHHHHhhhhhhccccccccchhhcc-----------cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchh
Q psy13786         44 FRLIYLGLIVILPGVAPGMSFGFPAVALPQMS-----------YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSA  112 (219)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~  112 (219)
                      +........+.++.+..+++...+++..|.+.           +.++.+.+++.+.+.++..+++++.|+++||+|||++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~   87 (479)
T PRK10077          8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS   87 (479)
T ss_pred             hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            34455566666777888998888887766443           5677899999999999999999999999999999999


Q ss_pred             hhHhhHHHHHHHHHHHhh------------hhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHH
Q psy13786        113 LMITNVPSLCGWLLMATK------------SDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIA  180 (219)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  180 (219)
                      +..+.++..++.+.+++.            +.+..+++.|++.|++.|...+...+++.|++|++   +|++++++.+.+
T Consensus        88 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~---~rg~~~~~~~~~  164 (479)
T PRK10077         88 LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAH---IRGKLVSFNQFA  164 (479)
T ss_pred             HHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChh---hhhHHHHHHHHH
Confidence            999999988888777652            22567789999999999999999999999999999   999999999999


Q ss_pred             HHHHHHHHHHHhhhh------------hhHHHHHHHHHHHHHHHHHH
Q psy13786        181 LTSGILLSYLTGAFF------------WYTTVAYIGAFVSFLSLVLV  215 (219)
Q Consensus       181 ~~~g~~~~~~~~~~~------------~w~~~~~~~~~~~~~~~~~~  215 (219)
                      ..+|..+++.++...            +||+.|++.+++.++..+..
T Consensus       165 ~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~  211 (479)
T PRK10077        165 IIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLL  211 (479)
T ss_pred             HHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHH
Confidence            999999887765422            79999998877776665443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.85  E-value=9.8e-20  Score=148.34  Aligned_cols=160  Identities=17%  Similarity=0.147  Sum_probs=139.4

Q ss_pred             HHhhhhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhh
Q psy13786         54 ILPGVAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATK  130 (219)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~  130 (219)
                      .+..+........+.+.+|.+.   +.+..+.++..+.+.++..+++++.|+++||+|||+++..+..+..++.+++..+
T Consensus        22 ~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a  101 (413)
T PRK15403         22 ILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT  101 (413)
T ss_pred             HHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc
Confidence            3444445555666777777665   8899999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHH
Q psy13786        131 SDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAF  206 (219)
Q Consensus       131 ~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~  206 (219)
                      ++++.+++.|+++|++.+...+....++.|.+|++   +|++.+++.+....+|..++|.+++.+    +||+.|++.++
T Consensus       102 ~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~  178 (413)
T PRK15403        102 TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQT---KGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAV  178 (413)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            99999999999999998876677778899999999   999999999999999999999998876    89999999888


Q ss_pred             HHHHHHHHHH
Q psy13786        207 VSFLSLVLVA  216 (219)
Q Consensus       207 ~~~~~~~~~~  216 (219)
                      ..++..+..+
T Consensus       179 ~~~i~~~~~~  188 (413)
T PRK15403        179 MGLIAFVGLL  188 (413)
T ss_pred             HHHHHHHHHH
Confidence            7777665443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.85  E-value=6.7e-20  Score=150.17  Aligned_cols=166  Identities=24%  Similarity=0.270  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHHHhhhhhhccccccccchhhcc-c-----CChhhHHH---HHHHHHHHHHHHHhhHhHhhhhhCCchhhh
Q psy13786         44 FRLIYLGLIVILPGVAPGMSFGFPAVALPQMS-Y-----LTIDQASW---FASISAITMPIGCLLSGPIIDKYGRKSALM  114 (219)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~  114 (219)
                      .+++.......++.+.+.++...++...|.+. .     .+..+.+.   ..+...++..++++++|+++||+|||+++.
T Consensus        18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~   97 (432)
T PRK10406         18 RRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSML   97 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            34555555666677778888887776666554 2     34444333   344455556699999999999999999999


Q ss_pred             HhhHHHHHHHHHHHhhhhHH--------HHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHH
Q psy13786        115 ITNVPSLCGWLLMATKSDLI--------NLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGIL  186 (219)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  186 (219)
                      ++.+++.++.+++++++++.        .+++.|+++|++.|...+...+++.|++|++   +|++..++.+.+...|..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~---~rg~~~~~~~~~~~~G~~  174 (432)
T PRK10406         98 ISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEG---RKGFYASFQYVTLIGGQL  174 (432)
T ss_pred             HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCC---cccHHHHHHHHHHHHHHH
Confidence            99999999999999887763        5888999999999999999999999999999   999999988888877777


Q ss_pred             HHHHHhhh------------hhhHHHHHHHHHHHHHHH
Q psy13786        187 LSYLTGAF------------FWYTTVAYIGAFVSFLSL  212 (219)
Q Consensus       187 ~~~~~~~~------------~~w~~~~~~~~~~~~~~~  212 (219)
                      +++.+...            .+||+.|++.+++.++..
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~  212 (432)
T PRK10406        175 LALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVAL  212 (432)
T ss_pred             HHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHH
Confidence            77654322            189999998777766543

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.85  E-value=1.3e-20  Score=155.78  Aligned_cols=168  Identities=14%  Similarity=-0.016  Sum_probs=140.2

Q ss_pred             HHHHHHHHHHhhhhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHH
Q psy13786         46 LIYLGLIVILPGVAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLC  122 (219)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~  122 (219)
                      .+.....+.+.+.....+....+...|.+.   |.+..+.+++.+.+.+++.+++++.|+++||+|||+++..+.+++++
T Consensus        27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~  106 (467)
T PRK09556         27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAI  106 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHH
Confidence            344455666666666667777777777665   89999999999999999999999999999999999999888888777


Q ss_pred             HHHHHHh-----hhhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh--
Q psy13786        123 GWLLMAT-----KSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF--  195 (219)
Q Consensus       123 ~~~~~~~-----~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~--  195 (219)
                      ..+..+.     +++++.+++.|++.|++.+...+....++.|++|++   +||+++++.+.+..+|..+++.+....  
T Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~rg~a~gi~~~~~~lG~~l~~~i~~~~~~  183 (467)
T PRK09556        107 CMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRR---KRGRFLGFWNISHNLGGAGAGGVALWGAN  183 (467)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCcc---ceeeeEEeeecccchhhhHHHHHHHHHHH
Confidence            7766554     589999999999999999999999999999999999   999999999999999999988877543  


Q ss_pred             -----hhHHHHHHHHHHHHHHHHHHH
Q psy13786        196 -----WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       196 -----~w~~~~~~~~~~~~~~~~~~~  216 (219)
                           +|+..|.+.+++.++..++.+
T Consensus       184 ~~~~~~~~~~f~~~g~~~~~~~i~~~  209 (467)
T PRK09556        184 YFFDGHVIGMFIFPSIIALIIGFIGL  209 (467)
T ss_pred             hhccCcchhHHHHHHHHHHHHHHHHH
Confidence                 488888887777666555443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.84  E-value=1.5e-20  Score=147.54  Aligned_cols=173  Identities=17%  Similarity=0.166  Sum_probs=157.5

Q ss_pred             hHHHHHHHHHHHHhhhhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHH
Q psy13786         43 LFRLIYLGLIVILPGVAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVP  119 (219)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~  119 (219)
                      ++.|+.+.+.+.+++.......-..+...|.+.   ++|.+|.|.+.+.+.+.+.++..+.|.++||.+.|+.+..+.++
T Consensus        24 ~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLil  103 (448)
T COG2271          24 KRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLIL  103 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHH
Confidence            344566777777888887777777788888777   69999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHh--hhh--
Q psy13786        120 SLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTG--AFF--  195 (219)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--~~~--  195 (219)
                      .++.+++++++++.+.+.+..++.|..+|...|.+...+++++|++   +||+..+++|++.++|+.+.|++.  +.+  
T Consensus       104 sai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~---eRG~~~siWn~shNiGGal~~~~~~la~~~~  180 (448)
T COG2271         104 SAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRK---ERGTWWSIWNTSHNIGGALAPLVALLAFFAF  180 (448)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCcc---ccCceEEEehhhhhcccchHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999   999999999999999999998888  555  


Q ss_pred             --hhHHHHHHHHHHHHHHHHHHHhh
Q psy13786        196 --WYTTVAYIGAFVSFLSLVLVAMI  218 (219)
Q Consensus       196 --~w~~~~~~~~~~~~~~~~~~~~~  218 (219)
                        +||..|++.++++++..+..++.
T Consensus       181 ~~~w~~~f~~pgiiaiival~~~~~  205 (448)
T COG2271         181 HGGWRAAFYFPGIIAIIVALILLFL  205 (448)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHH
Confidence              89999999999998887776653

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.84  E-value=1e-19  Score=148.70  Aligned_cols=158  Identities=23%  Similarity=0.267  Sum_probs=140.0

Q ss_pred             HHHHHHHHHhhhhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHH
Q psy13786         47 IYLGLIVILPGVAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCG  123 (219)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~  123 (219)
                      +.....+.+..+..+++.....+..|.+.   |.++.+.++..+.+.++..+++++.|+++||+|||+++.++.+...++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~   96 (426)
T PRK12307         17 KNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVG   96 (426)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            33345556666677777777777777665   899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHH
Q psy13786        124 WLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTT  199 (219)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~  199 (219)
                      .++.+++++++.++++|++.|++.+...+....++.|.+|++   +|++++++.+.+..+|..+++.+...+    +||+
T Consensus        97 ~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~  173 (426)
T PRK12307         97 TGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKH---LKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRA  173 (426)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHh---HhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHH
Confidence            999999999999999999999999999999999999999999   999999999999999999998887765    8999


Q ss_pred             HHHHHHHH
Q psy13786        200 VAYIGAFV  207 (219)
Q Consensus       200 ~~~~~~~~  207 (219)
                      .|++..+.
T Consensus       174 ~f~i~~~~  181 (426)
T PRK12307        174 AFFVGLLP  181 (426)
T ss_pred             HHHHHHHH
Confidence            99875543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.84  E-value=7.7e-20  Score=146.63  Aligned_cols=149  Identities=15%  Similarity=0.051  Sum_probs=123.0

Q ss_pred             cccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHH
Q psy13786         65 GFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRL  141 (219)
Q Consensus        65 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (219)
                      ..+++.+|.+.   |.++.+.+++.+.+.+++.+++++.|+++||+|||+++..+......+.......+++..+++.|+
T Consensus         8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~   87 (368)
T TIGR00903         8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQL   87 (368)
T ss_pred             HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            34456666666   899999999999999999999999999999999998876655555444333333478999999999


Q ss_pred             HHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHh
Q psy13786        142 LSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVAM  217 (219)
Q Consensus       142 l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~  217 (219)
                      +.|++.+. .........|++|++   +|++++++.+.+..+|..+++.++..+    +||+.|++.++++++..++.++
T Consensus        88 l~G~g~~~-~~~~~~~~~~~~~~~---~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~  163 (368)
T TIGR00903        88 LAALGQPF-LLNAFAPAASQIREE---RRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLA  163 (368)
T ss_pred             HHHhHhHH-HHHHHHHHHHHcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence            99999985 455666679999999   999999999999999999999998887    9999999988887777665544

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.83  E-value=2.4e-19  Score=149.52  Aligned_cols=172  Identities=16%  Similarity=0.131  Sum_probs=145.0

Q ss_pred             chHHHHHHHHHHHHhhhhhhccccccccchhhcc--------cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhh
Q psy13786         42 TLFRLIYLGLIVILPGVAPGMSFGFPAVALPQMS--------YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSAL  113 (219)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~  113 (219)
                      ..+.++....++.++.+.++++....+...|.+.        +.++.+.+++.+...++..+++++.|+++||+|||+++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~   89 (502)
T TIGR00887        10 FGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVY   89 (502)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence            3456677777888888999999888776666543        23455778999999999999999999999999999999


Q ss_pred             hHhhHHHHHHHHHHHhhhh------HHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHH
Q psy13786        114 MITNVPSLCGWLLMATKSD------LINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILL  187 (219)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  187 (219)
                      .++.++..++.++++++++      ++.++++|++.|++.|...+..+.++.|.+|++   +|+++.++.+....+|..+
T Consensus        90 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~---~Rg~~~~~~~~~~~~g~~~  166 (502)
T TIGR00887        90 GMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKK---WRGAMMAAVFAMQGFGILA  166 (502)
T ss_pred             HHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHH
Confidence            9999999999988888765      678999999999999999999999999999999   9999999999999999888


Q ss_pred             HHHHhhhh---------------------------hhHHHHHHHHHHHHHHHHHHH
Q psy13786        188 SYLTGAFF---------------------------WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       188 ~~~~~~~~---------------------------~w~~~~~~~~~~~~~~~~~~~  216 (219)
                      ++.++..+                           +||+.+.+.++++++..+..+
T Consensus       167 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~  222 (502)
T TIGR00887       167 GAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRL  222 (502)
T ss_pred             HHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHH
Confidence            88765421                           599999888877766655443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.83  E-value=2.9e-19  Score=148.62  Aligned_cols=160  Identities=20%  Similarity=0.260  Sum_probs=128.5

Q ss_pred             HHHHHHHhhhhhhccccccccchhhcc---c--CChhh--HHH--HHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHH
Q psy13786         49 LGLIVILPGVAPGMSFGFPAVALPQMS---Y--LTIDQ--ASW--FASISAITMPIGCLLSGPIIDKYGRKSALMITNVP  119 (219)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~--~~~--~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~  119 (219)
                      ......++.++.+++...++...|.+.   +  .++..  .+.  ..++..++..++++++|+++||+|||+++.++.++
T Consensus        17 ~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l   96 (490)
T PRK10642         17 AITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVI   96 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            344556677788888888777777654   2  22211  111  24777899999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhHHH--------HHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHH
Q psy13786        120 SLCGWLLMATKSDLIN--------LYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLT  191 (219)
Q Consensus       120 ~~~~~~~~~~~~~~~~--------~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  191 (219)
                      ++++.+++++++|+..        +++.|+++|++.|+..+....++.|++|++   +||+..++...+..+|..+++.+
T Consensus        97 ~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~---~Rg~~~~~~~~~~~~G~~lg~~~  173 (490)
T PRK10642         97 MSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDR---KRGFMGSWLDFGSIAGFVLGAGV  173 (490)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCC---CCcHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999864        788999999999999999999999999999   99999999888877777777644


Q ss_pred             hhh------------hhhHHHHHHHHHHHHHH
Q psy13786        192 GAF------------FWYTTVAYIGAFVSFLS  211 (219)
Q Consensus       192 ~~~------------~~w~~~~~~~~~~~~~~  211 (219)
                      ...            .+||+.|++.+++.++.
T Consensus       174 ~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~  205 (490)
T PRK10642        174 VVLISTIVGEANFLDWGWRIPFFIALPLGIIG  205 (490)
T ss_pred             HHHHHHhcCHHHhcCccHHHHHHHHHHHHHHH
Confidence            321            18999999977655543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.83  E-value=4.4e-20  Score=153.10  Aligned_cols=163  Identities=15%  Similarity=0.237  Sum_probs=144.7

Q ss_pred             HHHHHhhhhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHH
Q psy13786         51 LIVILPGVAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLM  127 (219)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~  127 (219)
                      ..+.++.+...++....++..|.+.   |.++.+.+++.+.+.++..++.++.|+++||+|||+++..+.++..++.+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   84 (485)
T TIGR00711         5 IVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLC   84 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence            3444555666667777777777776   8889999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHH
Q psy13786        128 ATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYI  203 (219)
Q Consensus       128 ~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~  203 (219)
                      +.+++++.+++.|++.|++.+...+....++.|.+|++   +|+++.++++....+|..++|.+++.+    +||+.|++
T Consensus        85 ~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~  161 (485)
T TIGR00711        85 GVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPE---KRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLI  161 (485)
T ss_pred             hCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhh
Confidence            99999999999999999999999999999999999999   999999999999999999999998877    89999998


Q ss_pred             HHHHHHHHHHHHH
Q psy13786        204 GAFVSFLSLVLVA  216 (219)
Q Consensus       204 ~~~~~~~~~~~~~  216 (219)
                      .+.+.++..++.+
T Consensus       162 ~~~~~~~~~~~~~  174 (485)
T TIGR00711       162 NVPIGIIVVVVAF  174 (485)
T ss_pred             hhHHHHHHHHHHH
Confidence            8777666655443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.83  E-value=3.2e-19  Score=143.56  Aligned_cols=153  Identities=14%  Similarity=0.197  Sum_probs=136.5

Q ss_pred             hccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHH
Q psy13786         61 GMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLY  137 (219)
Q Consensus        61 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (219)
                      ........+..|.+.   |.++.+.+++.+.+.++..+++++.|++.||+|||+.+..+.++..++.+...+.++++.+.
T Consensus        18 ~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (385)
T TIGR00710        18 PLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLL   97 (385)
T ss_pred             HHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence            344455566677655   89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHH
Q psy13786        138 ISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLV  213 (219)
Q Consensus       138 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~  213 (219)
                      +.|++.|++.+...+....++.|.+|++   +|++..++.+....+|..++|.+++.+    +||+.+++.++..++..+
T Consensus        98 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  174 (385)
T TIGR00710        98 VLRFVQAFGASAGSVISQALVRDIYPGE---ELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSA  174 (385)
T ss_pred             HHHHHHHcchhHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999   999999999999999999999998876    899999988877766655


Q ss_pred             HHH
Q psy13786        214 LVA  216 (219)
Q Consensus       214 ~~~  216 (219)
                      ..+
T Consensus       175 ~~~  177 (385)
T TIGR00710       175 LIF  177 (385)
T ss_pred             HHH
Confidence            544

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.83  E-value=8e-19  Score=145.40  Aligned_cols=149  Identities=15%  Similarity=0.104  Sum_probs=121.4

Q ss_pred             cccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHH
Q psy13786         65 GFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRL  141 (219)
Q Consensus        65 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (219)
                      ....+..|.+.   |++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.+...++.++.+++++++.+++.|+
T Consensus        53 ~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~  132 (476)
T PLN00028         53 FAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRF  132 (476)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            33445555555   899999999999999999999999999999999999999999999999998999999999999999


Q ss_pred             HHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhh-------------hhhHHHHHHHHHHH
Q psy13786        142 LSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAF-------------FWYTTVAYIGAFVS  208 (219)
Q Consensus       142 l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~-------------~~w~~~~~~~~~~~  208 (219)
                      +.|++.+.. .....++.|++|++   +|++++++.+....+|..+++.+...             .+||+.|++.+++.
T Consensus       133 l~G~~~~~~-~~~~~~i~~~~~~~---~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~  208 (476)
T PLN00028        133 FIGFSLATF-VSCQYWMSTMFNGK---IVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLH  208 (476)
T ss_pred             HHHHHHHhh-HHHHHHHHHhcChh---heeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH
Confidence            999988764 34566889999999   99999998876666665555433321             17999999988887


Q ss_pred             HHHHHHHHh
Q psy13786        209 FLSLVLVAM  217 (219)
Q Consensus       209 ~~~~~~~~~  217 (219)
                      ++..+..++
T Consensus       209 l~~~l~~~~  217 (476)
T PLN00028        209 IIMGILVLT  217 (476)
T ss_pred             HHHHHHHHH
Confidence            776655543

>PRK03699 putative transporter; Provisional

Probab=99.83  E-value=3.3e-19  Score=144.40  Aligned_cols=161  Identities=12%  Similarity=0.093  Sum_probs=138.4

Q ss_pred             HHHHhhhhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHH
Q psy13786         52 IVILPGVAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMA  128 (219)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~  128 (219)
                      .+.+..+..+.........+|.+.   |.++.+.+++.+...++..+++++.|++.||+|||+++..+.++..++.++..
T Consensus        11 ~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~   90 (394)
T PRK03699         11 ISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLM   90 (394)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            334455555565666666777766   89999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHH
Q psy13786        129 TKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF-----WYTTVAYI  203 (219)
Q Consensus       129 ~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~~~~~  203 (219)
                      ++++++.+++.|++.|++.+...+....++.|.+|++   +|++.++..+....+|..++|.+.+.+     +||+.|.+
T Consensus        91 ~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~  167 (394)
T PRK03699         91 FSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGK---QRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYAC  167 (394)
T ss_pred             HcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            9999999999999999999988888899999999999   999999988888888888888877654     89999998


Q ss_pred             HHHHHHHHHHHH
Q psy13786        204 GAFVSFLSLVLV  215 (219)
Q Consensus       204 ~~~~~~~~~~~~  215 (219)
                      .+++.++..++.
T Consensus       168 ~~~~~~~~~~~~  179 (394)
T PRK03699        168 IGLVYVAIFILT  179 (394)
T ss_pred             HHHHHHHHHHHH
Confidence            887766655443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.83  E-value=2.5e-19  Score=144.50  Aligned_cols=152  Identities=18%  Similarity=0.175  Sum_probs=133.9

Q ss_pred             hccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHH
Q psy13786         61 GMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLY  137 (219)
Q Consensus        61 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (219)
                      +.......+.+|.+.   |.+..+.++..+...++..+++++.|+++||+|||+++..+.++.+++.++++++++++.++
T Consensus        16 ~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~   95 (382)
T PRK10091         16 GMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLA   95 (382)
T ss_pred             HhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence            333444455566555   88999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHH
Q psy13786        138 ISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLV  213 (219)
Q Consensus       138 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~  213 (219)
                      +.|++.|++.+...+....++.|++|++   +|++.++....+..+|..++|++++.+    +||+.|++.++..++..+
T Consensus        96 ~~r~l~G~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~  172 (382)
T PRK10091         96 IGRLVSGFPHGAFFGVGAIVLSKIIKPG---KVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLA  172 (382)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhCChH---HhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHH
Confidence            9999999999988888888999999999   999999999999999999999888776    899999998887766655


Q ss_pred             HH
Q psy13786        214 LV  215 (219)
Q Consensus       214 ~~  215 (219)
                      ..
T Consensus       173 ~~  174 (382)
T PRK10091        173 SI  174 (382)
T ss_pred             HH
Confidence            43

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.82  E-value=7.6e-19  Score=142.76  Aligned_cols=170  Identities=13%  Similarity=0.061  Sum_probs=144.2

Q ss_pred             HHHHHHHHHHHHhhhhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHH
Q psy13786         44 FRLIYLGLIVILPGVAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPS  120 (219)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~  120 (219)
                      ++.+...+.+.+..+...+....+.+.+|.+.   |.++.+.++..+.+.++..+++++.|+++||+|||+++..+....
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~   88 (406)
T PRK15402          9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFF   88 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            44455555666666665566666666676655   899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----h
Q psy13786        121 LCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----W  196 (219)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~  196 (219)
                      .++.+....+++++.+++.|++.|++.+...+....++.|.+|++   +|.+..++......+|..++|.+++.+    +
T Consensus        89 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~  165 (406)
T PRK15402         89 ILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEA---DAIKITALMANVALLAPLLGPLVGAALIHVLP  165 (406)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            999999999999999999999999999888888899999999999   999999988888888889999888766    8


Q ss_pred             hHHHHHHHHHHHHHHHHHHH
Q psy13786        197 YTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       197 w~~~~~~~~~~~~~~~~~~~  216 (219)
                      ||+.+++.++..++..+..+
T Consensus       166 w~~~~~~~~~~~~~~~~~~~  185 (406)
T PRK15402        166 WRGMFVLFAALAALSFFGLW  185 (406)
T ss_pred             ccHHHHHHHHHHHHHHHHHH
Confidence            99999988888776665443

>PRK10504 putative transporter; Provisional

Probab=99.82  E-value=5.1e-19  Score=146.39  Aligned_cols=158  Identities=16%  Similarity=0.153  Sum_probs=138.2

Q ss_pred             Hhhhhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhh
Q psy13786         55 LPGVAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKS  131 (219)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~  131 (219)
                      ++.+...++.+...+.+|.+.   |.++.+.+++.+.+.++..++.++.|+++||+|||+++..+.++..++.+.+.+++
T Consensus        17 ~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~   96 (471)
T PRK10504         17 FGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSG   96 (471)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhC
Confidence            344555555666666777766   89999999999999999999999999999999999999999999999888888899


Q ss_pred             hHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHH
Q psy13786        132 DLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFV  207 (219)
Q Consensus       132 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~  207 (219)
                      +.+.+++.|++.|++.+...+....++.|.+|++   +|+++.+..+....+|..++|.+++.+    +||+.|++....
T Consensus        97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~  173 (471)
T PRK10504         97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPRE---QYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPV  173 (471)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHH
Confidence            9999999999999999999999999999999999   999999999999999999999998877    899999988776


Q ss_pred             HHHHHHHH
Q psy13786        208 SFLSLVLV  215 (219)
Q Consensus       208 ~~~~~~~~  215 (219)
                      ..+..+..
T Consensus       174 ~~l~~~~~  181 (471)
T PRK10504        174 GIIGAIAT  181 (471)
T ss_pred             HHHHHHHH
Confidence            66555444

>KOG0254|consensus

Probab=99.82  E-value=1e-18  Score=146.06  Aligned_cols=168  Identities=28%  Similarity=0.380  Sum_probs=139.8

Q ss_pred             HHHHHHHHHHHhhhhhhcc--ccccccchhhcc------cCCh----hhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchh
Q psy13786         45 RLIYLGLIVILPGVAPGMS--FGFPAVALPQMS------YLTI----DQASWFASISAITMPIGCLLSGPIIDKYGRKSA  112 (219)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~------~~~~----~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~  112 (219)
                      ..........+..+..+++  .....+....+.      ....    .+.+++.+...++..+++++.|+++|++|||+.
T Consensus        42 ~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~  121 (513)
T KOG0254|consen   42 FVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKT  121 (513)
T ss_pred             ehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            3444445555556666665  344444444333      1111    345899999999999999999999999999999


Q ss_pred             hhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHh
Q psy13786        113 LMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTG  192 (219)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  192 (219)
                      ++.+.++..++.+++++++|+..++++|++.|+|.|......+.|++|..|++   .||...+..+....+|..++..++
T Consensus       122 l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~---~RG~l~~~~~l~~~~Gi~~~~~~~  198 (513)
T KOG0254|consen  122 LLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAH---IRGTLVSLYQLFITIGILLGYCIN  198 (513)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChh---hhHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999   999999999999999999997776


Q ss_pred             hhh-----hhHHHHHHHHHHHHHHHHHH
Q psy13786        193 AFF-----WYTTVAYIGAFVSFLSLVLV  215 (219)
Q Consensus       193 ~~~-----~w~~~~~~~~~~~~~~~~~~  215 (219)
                      ...     +||..+.+..+++++..+..
T Consensus       199 ~~~~~~~~~Wr~~~~~~~i~~~~~~~~~  226 (513)
T KOG0254|consen  199 YGTSKVYAGWRIPLGLALIPAVILALGM  226 (513)
T ss_pred             hhhccCCccHHHHHHHHHHHHHHHHHHH
Confidence            666     49999988888888877763

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.82  E-value=1.2e-18  Score=141.18  Aligned_cols=143  Identities=15%  Similarity=0.110  Sum_probs=125.6

Q ss_pred             cccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHH
Q psy13786         65 GFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRL  141 (219)
Q Consensus        65 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (219)
                      ...++.+|.+.   |.|..+.++..+.+.++..+++++.|++.||+|||+++..+..+.+++.+.++++++++.+++.|+
T Consensus        26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~  105 (393)
T PRK09705         26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSAL  105 (393)
T ss_pred             hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHH
Confidence            44567777776   899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHH
Q psy13786        142 LSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF-----WYTTVAYIGAFVSFLS  211 (219)
Q Consensus       142 l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~~~~~~~~~~~~~  211 (219)
                      +.|++.+...+.....+.+.+| +   +|+++++.+..+...|..+++.++..+     +||+.+.+.++..++.
T Consensus       106 l~Gig~~~~~~~~~~~~~~~~~-~---~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~  176 (393)
T PRK09705        106 LGGVGIGIIQAVMPSVIKRRFQ-Q---RTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVA  176 (393)
T ss_pred             HHHhHHHHHhhhhhHHHHHHcc-c---cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            9999999988888999999987 6   799999999888877777777776654     7998877665554433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.82  E-value=3.4e-19  Score=141.53  Aligned_cols=150  Identities=24%  Similarity=0.338  Sum_probs=131.9

Q ss_pred             ccccccccchh-hcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHH
Q psy13786         62 MSFGFPAVALP-QMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLY  137 (219)
Q Consensus        62 ~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (219)
                      .......+..| .+.   |.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++..++++.+.++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~   89 (352)
T PF07690_consen   10 FGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLL   89 (352)
T ss_dssp             HHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHh
Confidence            33444445555 332   88999999999999999999999999999999999999999999999966666668888899


Q ss_pred             HHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHH
Q psy13786        138 ISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLV  213 (219)
Q Consensus       138 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~  213 (219)
                      +.|++.|++.+...+....++.|.+|++   +|++.++..+....+|..++|.+++.+    +||+.|++.++..++..+
T Consensus        90 ~~~~l~g~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~i  166 (352)
T PF07690_consen   90 IARFLLGIGSGFFSPASNALIADWFPPE---ERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAI  166 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCCTC---CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHH
T ss_pred             hhccccccccccccccccccccccchhh---hhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhh
Confidence            9999999999999999999999999999   999999999999999999999999987    899999999988888866


Q ss_pred             H
Q psy13786        214 L  214 (219)
Q Consensus       214 ~  214 (219)
                      +
T Consensus       167 l  167 (352)
T PF07690_consen  167 L  167 (352)
T ss_dssp             H
T ss_pred             h
Confidence            4

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.81  E-value=1.3e-18  Score=144.87  Aligned_cols=160  Identities=24%  Similarity=0.280  Sum_probs=139.3

Q ss_pred             HHHHHHHHHhhhhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHH
Q psy13786         47 IYLGLIVILPGVAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCG  123 (219)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~  123 (219)
                      +.....+.+..+...++.....+..|.+.   |.++.+.++..+.+.++..+++++.|+++||+|||+.+..+.++.+++
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   98 (496)
T PRK03893         19 WKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVG   98 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            33444455555666666666666677665   899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHH
Q psy13786        124 WLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTT  199 (219)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~  199 (219)
                      .++.+++++++.+.+.|++.|++.+...+....++.|.+|++   +|++++++.+.+..+|..++|.+.+.+    +||+
T Consensus        99 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~  175 (496)
T PRK03893         99 TLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKH---LRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRA  175 (496)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHH
Confidence            999999999999999999999999999999999999999999   999999999999999999999988877    8999


Q ss_pred             HHHHHHHHHH
Q psy13786        200 VAYIGAFVSF  209 (219)
Q Consensus       200 ~~~~~~~~~~  209 (219)
                      .|++.++..+
T Consensus       176 ~f~~~~~~~~  185 (496)
T PRK03893        176 LFFIGILPII  185 (496)
T ss_pred             HHHHHHHHHH
Confidence            9887544433

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.81  E-value=3e-19  Score=143.53  Aligned_cols=151  Identities=17%  Similarity=0.101  Sum_probs=134.3

Q ss_pred             cccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHH
Q psy13786         63 SFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYIS  139 (219)
Q Consensus        63 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (219)
                      +....+...|.+.   |.++.+.+++.+...++..+++++.|+++||+|||+++..+.++..++..+++++++++.+++.
T Consensus         9 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (399)
T TIGR00893         9 DRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYIL   88 (399)
T ss_pred             HHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            3334444445444   8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHH
Q psy13786        140 RLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLV  215 (219)
Q Consensus       140 ~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~  215 (219)
                      |++.|++.+...+....++.|.+|++   +|++.+++.+....+|..++|.+++.+    +||+.|++.++..++..+..
T Consensus        89 ~~l~g~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  165 (399)
T TIGR00893        89 RVLLGAAEAPFFPGIILIVASWFPAS---ERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLW  165 (399)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHhCCHH---HHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999   999999999999999999999998876    89999998887776665544


Q ss_pred             H
Q psy13786        216 A  216 (219)
Q Consensus       216 ~  216 (219)
                      +
T Consensus       166 ~  166 (399)
T TIGR00893       166 L  166 (399)
T ss_pred             h
Confidence            3

>TIGR00895 2A0115 benzoate transport

Probab=99.81  E-value=3e-19  Score=143.98  Aligned_cols=164  Identities=23%  Similarity=0.322  Sum_probs=138.9

Q ss_pred             HHHHHHHhhhhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHH
Q psy13786         49 LGLIVILPGVAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWL  125 (219)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~  125 (219)
                      ....+.+..+..++......+..|.+.   |.++.+.+++.+...++..+++++.|+++||+|||+.+..+.++..++.+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~   97 (398)
T TIGR00895        18 AIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTL   97 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            333344444555555555555666655   88999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHH
Q psy13786        126 LMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVA  201 (219)
Q Consensus       126 ~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~  201 (219)
                      +..+.++++.+++.|++.|++.+...+...+++.|.+|++   +|++.+++.+....+|..+++.+++.+    +|++.+
T Consensus        98 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~  174 (398)
T TIGR00895        98 LCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKR---FRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLF  174 (398)
T ss_pred             HHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHH---hhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeeh
Confidence            9889999999999999999999999999999999999999   999999999999999999999998776    899998


Q ss_pred             HHHHHHHHHHHHHH
Q psy13786        202 YIGAFVSFLSLVLV  215 (219)
Q Consensus       202 ~~~~~~~~~~~~~~  215 (219)
                      ++.++..++..+..
T Consensus       175 ~~~~~~~~~~~~~~  188 (398)
T TIGR00895       175 YVGGIAPLLLLLLL  188 (398)
T ss_pred             hhhhhHHHHHHHHH
Confidence            88765555544443

>TIGR00898 2A0119 cation transport protein

Probab=99.81  E-value=6.9e-19  Score=146.83  Aligned_cols=138  Identities=20%  Similarity=0.281  Sum_probs=128.4

Q ss_pred             cCC---hhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchh
Q psy13786         76 YLT---IDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATT  152 (219)
Q Consensus        76 ~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~  152 (219)
                      +++   +.+.++..+++.++..+++++.|+++||+|||+++.++.++..++.++.+++++++.+++.|++.|++.+...+
T Consensus       120 ~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~  199 (505)
T TIGR00898       120 DLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWV  199 (505)
T ss_pred             cceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHH
Confidence            777   88999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHH
Q psy13786        153 PAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF-WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       153 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-~w~~~~~~~~~~~~~~~~~~~  216 (219)
                      ....++.|++|++   +|++..++.+.+..+|..+++.++..+ +||+.+++.+++.++..+..+
T Consensus       200 ~~~~~~~e~~~~~---~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~  261 (505)
T TIGR00898       200 QAVVLNTEFLPKK---QRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSW  261 (505)
T ss_pred             HHHHHhheecChh---hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999   999999999999999999999988777 999999998888776665543

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.81  E-value=7.8e-19  Score=140.01  Aligned_cols=146  Identities=12%  Similarity=0.117  Sum_probs=129.0

Q ss_pred             cccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhh-----hHHHHHH
Q psy13786         67 PAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKS-----DLINLYI  138 (219)
Q Consensus        67 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  138 (219)
                      ..+.+|.+.   +.++.+.+++.+...++..+++++.|+++||+|||+++..+.++..++..+..+.+     +++.+++
T Consensus        18 ~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (365)
T TIGR00900        18 TQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYV   97 (365)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence            334444444   88999999999999999999999999999999999999999998888888877777     9999999


Q ss_pred             HHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHH
Q psy13786        139 SRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVL  214 (219)
Q Consensus       139 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~  214 (219)
                      .|++.|++.+...+...+++.|.+|++   +|++.+++.+....+|..++|.+++.+    +||+.+++.++..++..+.
T Consensus        98 ~~~l~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~  174 (365)
T TIGR00900        98 LAGILAIAQAFFTPAYQAMLPDLVPEE---QLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALL  174 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999   999999999999999999999998877    8999998877766655444


Q ss_pred             H
Q psy13786        215 V  215 (219)
Q Consensus       215 ~  215 (219)
                      .
T Consensus       175 ~  175 (365)
T TIGR00900       175 I  175 (365)
T ss_pred             H
Confidence            3

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.81  E-value=2.2e-18  Score=139.55  Aligned_cols=150  Identities=15%  Similarity=0.163  Sum_probs=130.9

Q ss_pred             ccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHH
Q psy13786         62 MSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYI  138 (219)
Q Consensus        62 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (219)
                      +....+.+.+|.+.   |.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.+...+.++++.+++
T Consensus        22 ~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~  101 (394)
T PRK11652         22 MAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIA  101 (394)
T ss_pred             HHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence            33444455666655   899999999999999999999999999999999999999999999999999889999999999


Q ss_pred             HHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHH
Q psy13786        139 SRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVL  214 (219)
Q Consensus       139 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~  214 (219)
                      .|++.|++.+...+....+..|.++++   +|+++++..+.+..++..++|.+++.+    +||+.|++.++..++..+.
T Consensus       102 ~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~  178 (394)
T PRK11652        102 ASAIQGLGTGVGGVMARTLPRDLYEGT---QLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFS  178 (394)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Confidence            999999998887788888899999988   999999999999999999999988876    8999999887766555443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.81  E-value=4.8e-19  Score=141.72  Aligned_cols=147  Identities=18%  Similarity=0.185  Sum_probs=127.3

Q ss_pred             cccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy13786         67 PAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLS  143 (219)
Q Consensus        67 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  143 (219)
                      ..+..|.+.   |.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.+.++++++++.+++.|++.
T Consensus        22 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (377)
T TIGR00890        22 WTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLA  101 (377)
T ss_pred             hhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555   99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHh
Q psy13786        144 GLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVAM  217 (219)
Q Consensus       144 G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~  217 (219)
                      |++.+..++.....+.|++| +   +|+++.++.+.+..+|..+++++....    +||+.|++.+++.++..+..++
T Consensus       102 g~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  175 (377)
T TIGR00890       102 SAGVGIAYGIALNTAVKWFP-D---KRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAF  175 (377)
T ss_pred             hHHHHHHHHhHHHHHHHHcC-c---ccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            99998887778888888887 5   699999999999999987765555444    8999999988887776655543

>PRK09952 shikimate transporter; Provisional

Probab=99.81  E-value=2.5e-18  Score=141.14  Aligned_cols=160  Identities=18%  Similarity=0.158  Sum_probs=127.4

Q ss_pred             HHHHHHHHhhhhhhccccccccchhhc-----c-cCChhhHHHHH-----HHHHHHHHHHHhhHhHhhhhhCCchhhhHh
Q psy13786         48 YLGLIVILPGVAPGMSFGFPAVALPQM-----S-YLTIDQASWFA-----SISAITMPIGCLLSGPIIDKYGRKSALMIT  116 (219)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~-----~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~  116 (219)
                      .......+..+.++++...+....|..     . +.++. .++..     ++..++..+++++.|+++||+|||+++..+
T Consensus        22 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~  100 (438)
T PRK09952         22 RAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLT  100 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHH
Confidence            345555567777888877766554421     1 45555 34443     345566789999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhhhHH--------HHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHH
Q psy13786        117 NVPSLCGWLLMATKSDLI--------NLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLS  188 (219)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~--------~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  188 (219)
                      .++++++++++++++++.        .+++.|+++|++.|...+....++.|++|++   +|++..+..+.+..+|..++
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~---~rg~~~~~~~~g~~~G~~l~  177 (438)
T PRK09952        101 VWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKN---KKAFYSSGVQVGYGVGLLLS  177 (438)
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCC---CCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999876        4888999999999999999999999999999   99999999999999998887


Q ss_pred             HHHhhh------------hhhHHHHHHHHHHHHHH
Q psy13786        189 YLTGAF------------FWYTTVAYIGAFVSFLS  211 (219)
Q Consensus       189 ~~~~~~------------~~w~~~~~~~~~~~~~~  211 (219)
                      +.+...            .+||+.|++.+++.++.
T Consensus       178 ~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~  212 (438)
T PRK09952        178 TGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIA  212 (438)
T ss_pred             HHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHH
Confidence            655432            28999999887765443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.80  E-value=2.2e-18  Score=139.69  Aligned_cols=146  Identities=20%  Similarity=0.275  Sum_probs=121.5

Q ss_pred             ccccccchhhcc----cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhh--------h
Q psy13786         64 FGFPAVALPQMS----YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATK--------S  131 (219)
Q Consensus        64 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~--------~  131 (219)
                      .....+.+|.+.    |.++.+.+++.+.+.++..+++++.|+++||+||||++..+.+..+++.+.+.++        .
T Consensus        31 ~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (399)
T PRK05122         31 IGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVL  110 (399)
T ss_pred             HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchh
Confidence            334445555432    8899999999999999999999999999999999999999988887766554432        2


Q ss_pred             hHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHH
Q psy13786        132 DLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFV  207 (219)
Q Consensus       132 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~  207 (219)
                      ++..+++.|++.|++.+...+....++.|.+|++   +|++++++.+.....|..+++.+++.+    +|++.+++..+.
T Consensus       111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~  187 (399)
T PRK05122        111 SLLLLLLGRLLLGIGESLAGTGSILWGIGRVGAL---HTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLL  187 (399)
T ss_pred             HHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChh---hhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            5667889999999999999999899999999999   999999999998999999999888776    899888776665


Q ss_pred             HHHHH
Q psy13786        208 SFLSL  212 (219)
Q Consensus       208 ~~~~~  212 (219)
                      .++..
T Consensus       188 ~~~~~  192 (399)
T PRK05122        188 ALLGL  192 (399)
T ss_pred             HHHHH
Confidence            54433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.80  E-value=2.8e-18  Score=141.39  Aligned_cols=145  Identities=16%  Similarity=0.159  Sum_probs=121.0

Q ss_pred             cchhhcc--cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhh----hhHHHHHHHHHH
Q psy13786         69 VALPQMS--YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATK----SDLINLYISRLL  142 (219)
Q Consensus        69 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l  142 (219)
                      ...|.+.  |.++.+.++..+...++..+++++.|+++||+|||+++.++.++.+++.+++++.    .+++.+++.|++
T Consensus        50 ~~~p~l~~~g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l  129 (452)
T PRK11273         50 LAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFL  129 (452)
T ss_pred             HhhHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHH
Confidence            3444433  8999999999999999999999999999999999999999999999888888765    367788899999


Q ss_pred             HhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHH-HHHHHhhhh----hhHHHHHHHHHHHHHHHHHHH
Q psy13786        143 SGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGIL-LSYLTGAFF----WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       143 ~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~  216 (219)
                      .|++.+...+.....+.|++|++   +|++++++++.+..+|.. .+|.+....    +||+.|++.+++.++..++.+
T Consensus       130 ~gi~~g~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~  205 (452)
T PRK11273        130 CGWFQGMGWPPCGRTMVHWWSQK---ERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAF  205 (452)
T ss_pred             HHHHHhccchHHHHHHHHhCChH---HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            99999988888888899999999   999999999999998864 455543222    999999998877666544443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.80  E-value=4.3e-18  Score=139.75  Aligned_cols=164  Identities=16%  Similarity=0.124  Sum_probs=131.6

Q ss_pred             HHHHHhhhhhhccccccccchhhcc--cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHH
Q psy13786         51 LIVILPGVAPGMSFGFPAVALPQMS--YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMA  128 (219)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~  128 (219)
                      ....+................|.+.  |.++++.++..+.+.++..+++++.|+++||+|||+++..+.++.+++.++..
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~  109 (438)
T TIGR00712        30 LGIFFGYAAYYLVRKNFALAMPYLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMG  109 (438)
T ss_pred             HHHHHHHHHHHHHhccHHhhhHHHHHcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHh
Confidence            3333333443333333333444444  99999999999999999999999999999999999999999989888888776


Q ss_pred             hh----hhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh-----hhHH
Q psy13786        129 TK----SDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF-----WYTT  199 (219)
Q Consensus       129 ~~----~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~  199 (219)
                      ..    +++..+.+.|++.|++.+...+.....+.|++|++   +|++++++++....+|..+++.+....     +||+
T Consensus       110 ~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~---~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~  186 (438)
T TIGR00712       110 FVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQS---ERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHA  186 (438)
T ss_pred             ccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcc---cchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHH
Confidence            54    46677788999999999988888899999999999   999999999999999998887765542     8999


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q psy13786        200 VAYIGAFVSFLSLVLVAM  217 (219)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~  217 (219)
                      .|++.++++++..+..++
T Consensus       187 ~f~~~~~~~~i~~~~~~~  204 (438)
T TIGR00712       187 ALYFPAICAIIVALFAFA  204 (438)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999988887776555443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.80  E-value=2.6e-18  Score=142.01  Aligned_cols=138  Identities=14%  Similarity=0.072  Sum_probs=124.0

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhh--hhHHHHHHHHHHHhhhhhcchhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATK--SDLINLYISRLLSGLSVGLATTP  153 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~G~~~~~~~~~  153 (219)
                      ++++.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++..++.+++.++  .+++.+++.|++.|++.+...+.
T Consensus        72 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~  151 (465)
T TIGR00894        72 KWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPA  151 (465)
T ss_pred             CCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhh
Confidence            6888999999999999999999999999999999999999999988888776543  56778899999999999999999


Q ss_pred             hhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHHHHHH
Q psy13786        154 AAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF-----WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       154 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~~~~~  216 (219)
                      ...++.|++|++   +|++++++.+.+..+|..+++++.+.+     +||+.|++.+++.++..++.+
T Consensus       152 ~~~~~~~~~~~~---~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~  216 (465)
T TIGR00894       152 THKIIVKWAPPK---ERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWF  216 (465)
T ss_pred             HHHHHHhcCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHH
Confidence            999999999999   999999999999999999999888766     799999998887776655544

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.79  E-value=6.4e-18  Score=133.83  Aligned_cols=157  Identities=28%  Similarity=0.354  Sum_probs=138.9

Q ss_pred             hhhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhH
Q psy13786         57 GVAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDL  133 (219)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~  133 (219)
                      .+..........+..|.+.   |.++.+.++..+...++..+++++.|+++||+|||+.+..+.++..++.+.....+++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~   87 (352)
T cd06174           8 FFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSL   87 (352)
T ss_pred             HHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccH
Confidence            3444445555555666555   8899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHH
Q psy13786        134 INLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSF  209 (219)
Q Consensus       134 ~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~  209 (219)
                      +.+.+.|++.|++.+...+....++.|.+|++   +|++.+++.+....+|..++|.+++.+    +||+.+++.++..+
T Consensus        88 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (352)
T cd06174          88 WLLLVGRFLLGLGGGALYPAAAALIAEWFPPK---ERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGL  164 (352)
T ss_pred             HHHHHHHHHHHcccccccHhHHHHHHHhCCcc---chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999   999999999999999999999999887    79999998888777


Q ss_pred             HHHHHHH
Q psy13786        210 LSLVLVA  216 (219)
Q Consensus       210 ~~~~~~~  216 (219)
                      +..+...
T Consensus       165 ~~~~~~~  171 (352)
T cd06174         165 LLALLLL  171 (352)
T ss_pred             HHHHHHH
Confidence            7665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.79  E-value=4.8e-18  Score=140.04  Aligned_cols=145  Identities=14%  Similarity=0.215  Sum_probs=124.6

Q ss_pred             cccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHH-HHHH
Q psy13786         67 PAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYI-SRLL  142 (219)
Q Consensus        67 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l  142 (219)
                      .+...|.+.   |.+..+.+++.+.+.++..++.++.|+++||+|||++++.+.++..++.++++++++++.+++ .|++
T Consensus        38 ~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  117 (455)
T TIGR00892        38 VTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFI  117 (455)
T ss_pred             hhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            445566555   899999999999999999999999999999999999999999999999999999999888765 4689


Q ss_pred             HhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHH
Q psy13786        143 SGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLV  215 (219)
Q Consensus       143 ~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~  215 (219)
                      .|++.+...+....++.++++ +   +|++++++.+.+..+|..++|.+++.+    +||+.|++.+++.++..+..
T Consensus       118 ~G~~~~~~~~~~~~~~~~~~~-~---~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~  190 (455)
T TIGR00892       118 TGLGLAFNFQPSLTMLGKYFY-R---RRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCG  190 (455)
T ss_pred             HHhcchhhhhHHHHHHHHHHH-h---hHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            999988766777788889886 6   799999999999999999999888776    89999999888776655443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.79  E-value=1.3e-17  Score=135.97  Aligned_cols=138  Identities=10%  Similarity=0.054  Sum_probs=115.4

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhh-----hhHHHHHHHHHHHhhhhhcc
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATK-----SDLINLYISRLLSGLSVGLA  150 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~G~~~~~~  150 (219)
                      |++++|.+++.+++.+++.++.++.|++.||+|.|+++.++.++..+..+..+++     ++++.+++.|++.|++ +..
T Consensus        66 ~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~  144 (462)
T PRK15034         66 NFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GAN  144 (462)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHh
Confidence            8999999999999999999999999999999999999999999999999988886     8999999999999998 668


Q ss_pred             hhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHH----HHHHHhhh------------------hhhHHHHHHHHHHH
Q psy13786        151 TTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGIL----LSYLTGAF------------------FWYTTVAYIGAFVS  208 (219)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~----~~~~~~~~------------------~~w~~~~~~~~~~~  208 (219)
                      ++.....+++++|++   +||+++|+.....++|..    +.|.+...                  .+||.+.++..++.
T Consensus       145 f~~~~~~vs~wfp~~---~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~  221 (462)
T PRK15034        145 FASSMGNISFFFPKA---KQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLL  221 (462)
T ss_pred             HHHHHHHHHHHCCHh---HhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHH
Confidence            889999999999999   999999998655555554    44443321                  13777777777776


Q ss_pred             HHHHHHHHh
Q psy13786        209 FLSLVLVAM  217 (219)
Q Consensus       209 ~~~~~~~~~  217 (219)
                      ++..++.++
T Consensus       222 iv~~i~~~~  230 (462)
T PRK15034        222 AIATIAAWS  230 (462)
T ss_pred             HHHHHHHHH
Confidence            666655554

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.79  E-value=5.8e-18  Score=136.95  Aligned_cols=146  Identities=19%  Similarity=0.189  Sum_probs=130.7

Q ss_pred             ccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q psy13786         68 AVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSG  144 (219)
Q Consensus        68 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  144 (219)
                      .+.+|.+.   |.++.+.++..+.+.++..+++++.|+++||+|||+.+..+.+...++...+..+++.+.+++.|++.|
T Consensus        23 ~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g  102 (392)
T PRK10473         23 LVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQG  102 (392)
T ss_pred             hhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            35566655   899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHH
Q psy13786        145 LSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~  216 (219)
                      ++.+...+....++.|.+|++   +|++..+..+....+|..++|.+++.+    +|++.+++.++..++..+..+
T Consensus       103 ~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~  175 (392)
T PRK10473        103 IGAGCCYVVAFAILRDTLDDR---RRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSL  175 (392)
T ss_pred             hhhhHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHH
Confidence            999988889999999999999   999999999999999999999888766    899999988877766655543

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.78  E-value=5.7e-18  Score=136.15  Aligned_cols=147  Identities=20%  Similarity=0.282  Sum_probs=132.7

Q ss_pred             cccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy13786         67 PAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLS  143 (219)
Q Consensus        67 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  143 (219)
                      +.+.+|.+.   |.++.+.+++.+.+.++..+++++.|+++||+|||+.+..+.++..++...+.+.++++.+.+.|++.
T Consensus        10 ~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~   89 (377)
T PRK11102         10 YLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLH   89 (377)
T ss_pred             HhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            346666655   89999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHH
Q psy13786        144 GLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       144 G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~  216 (219)
                      |++.+...+....++.|.+|++   +|++.+++.+....+|..++|.+++.+    +||+.|++.+++.++..+...
T Consensus        90 g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  163 (377)
T PRK11102         90 GLAAAAASVVINALMRDMFPKE---EFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVF  163 (377)
T ss_pred             HHHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence            9999988899999999999999   999999999999999999999988876    899999888877766655443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.78  E-value=1.2e-17  Score=135.59  Aligned_cols=136  Identities=20%  Similarity=0.272  Sum_probs=125.8

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAA  155 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~  155 (219)
                      |.++.+.|.+.+...+...+.+++.|+++||+|||+++.++.+...++.+.+...++++.+++.|++.|++.+...+...
T Consensus        42 g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~  121 (400)
T PRK11646         42 GWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRT  121 (400)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988888889


Q ss_pred             hhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHHHHH
Q psy13786        156 VYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF---WYTTVAYIGAFVSFLSLVL  214 (219)
Q Consensus       156 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~  214 (219)
                      +++.|.+|++   +|++++++.+....+|..++|.+++.+   +|++.|++.++..++..++
T Consensus       122 ~~~~~~~~~~---~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~  180 (400)
T PRK11646        122 ALVIKLIRPH---QRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAF  180 (400)
T ss_pred             HHHHHhcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999   999999999999999999999999888   8999999887766655443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.78  E-value=8.7e-19  Score=140.33  Aligned_cols=151  Identities=15%  Similarity=0.102  Sum_probs=131.6

Q ss_pred             ccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHH
Q psy13786         62 MSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYI  138 (219)
Q Consensus        62 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (219)
                      .+....+...|.+.   |.++.+.+++.+...++..+++++.|+++||+|||+++..+.++..++.++..++++++.+++
T Consensus         9 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (379)
T TIGR00881         9 LVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAA   88 (379)
T ss_pred             HhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            34444455555554   899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHH-Hhhhh----hhHHHHHHHHHHHHHHHH
Q psy13786        139 SRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYL-TGAFF----WYTTVAYIGAFVSFLSLV  213 (219)
Q Consensus       139 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~-~~~~~----~w~~~~~~~~~~~~~~~~  213 (219)
                      .|++.|++.+...+...+++.|++|++   +|++.+++.+.+..+|..++|. ++..+    +||+.|++.+++.++..+
T Consensus        89 ~~~~~g~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (379)
T TIGR00881        89 LWALNGIFQGMGWPPCGRTVTKWFSRS---ERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSL  165 (379)
T ss_pred             HHHHHHhhccccCCchHHHHHHhcCHh---hheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999   9999999999999999999983 54444    899999888777666544


Q ss_pred             HH
Q psy13786        214 LV  215 (219)
Q Consensus       214 ~~  215 (219)
                      +.
T Consensus       166 ~~  167 (379)
T TIGR00881       166 IC  167 (379)
T ss_pred             HH
Confidence            44

>PRK15075 citrate-proton symporter; Provisional

Probab=99.78  E-value=9.9e-18  Score=137.45  Aligned_cols=156  Identities=21%  Similarity=0.330  Sum_probs=124.9

Q ss_pred             HHHHHHHhhhhhhccccccccchhhcc---cCChhhHHHH-HHHH-----HHHHHHHHhhHhHhhhhhCCchhhhHhhHH
Q psy13786         49 LGLIVILPGVAPGMSFGFPAVALPQMS---YLTIDQASWF-ASIS-----AITMPIGCLLSGPIIDKYGRKSALMITNVP  119 (219)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~-----~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~  119 (219)
                      ....+.++.+.+.++....+...|.+.   +.++.+.+.. .+..     .++..+++++.|+++||+|||++++.+.++
T Consensus        16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~   95 (434)
T PRK15075         16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSI   95 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHH
Confidence            456666778888899888888888776   6666655433 3222     233357889999999999999999999999


Q ss_pred             HHHHHHHHHhhhhHH--------HHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHH
Q psy13786        120 SLCGWLLMATKSDLI--------NLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLT  191 (219)
Q Consensus       120 ~~~~~~~~~~~~~~~--------~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  191 (219)
                      ..++.++++++++++        .+++.|++.|++.+...+....++.|++|++   +|++.+++.+....+|..+++.+
T Consensus        96 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~---~rg~~~~~~~~~~~~g~~~g~~~  172 (434)
T PRK15075         96 MASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPG---RKGFYTSWQSASQQVAVVFAALL  172 (434)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcc---cchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998876        3688999999999999998899999999999   99999999888777776666655


Q ss_pred             hhhh------------hhHHHHHHHHHH
Q psy13786        192 GAFF------------WYTTVAYIGAFV  207 (219)
Q Consensus       192 ~~~~------------~w~~~~~~~~~~  207 (219)
                      +..+            +||++|++..+.
T Consensus       173 g~~l~~~~~~~~~~~~gWr~~f~~~~~~  200 (434)
T PRK15075        173 GYLLNQWLSPAQMAEWGWRIPFLIGCLI  200 (434)
T ss_pred             HHHHHHhCCHHHHhccchHHHHHHHHHH
Confidence            5432            899999875443

>PRK10054 putative transporter; Provisional

Probab=99.78  E-value=1.2e-17  Score=135.32  Aligned_cols=137  Identities=14%  Similarity=0.185  Sum_probs=124.3

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAA  155 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~  155 (219)
                      |.++.+.+++.+...++..+++++.|+++||+|||+++.++.+...++.+...+.++++.+++.+.+.|.+.+...+...
T Consensus        39 g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  118 (395)
T PRK10054         39 SLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLK  118 (395)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999989888888999999888889888888777778889


Q ss_pred             hhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHHHHHH
Q psy13786        156 VYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF---WYTTVAYIGAFVSFLSLVLV  215 (219)
Q Consensus       156 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~  215 (219)
                      .+..|..|++   +|+++.++.+...++|..++|.+++.+   +|+..|++.++..++..++.
T Consensus       119 ~~~~~~~~~~---~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~  178 (395)
T PRK10054        119 AWFADNLSST---SKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFI  178 (395)
T ss_pred             HHHHHhcCHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence            9999999999   999999999999999999999999987   89999998887776665444

>PRK12382 putative transporter; Provisional

Probab=99.78  E-value=2.1e-17  Score=133.77  Aligned_cols=143  Identities=15%  Similarity=0.215  Sum_probs=117.8

Q ss_pred             ccccccchhhcc----cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHH---h-----hh
Q psy13786         64 FGFPAVALPQMS----YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMA---T-----KS  131 (219)
Q Consensus        64 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~---~-----~~  131 (219)
                      .+...+.+|.+.    |.|+.+.+++.+.+.++..+++++.|+++||+||||++..+.+...++.+...   .     .+
T Consensus        31 ~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (392)
T PRK12382         31 VGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPF  110 (392)
T ss_pred             HHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhH
Confidence            334445555421    89999999999999999999999999999999999999988877666544321   1     35


Q ss_pred             hHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHH
Q psy13786        132 DLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFV  207 (219)
Q Consensus       132 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~  207 (219)
                      +++.+++.|++.|++.+...+...+++.|.+|++   +|+++++..+.+...|..++|.+++.+    +|++.+.+..+.
T Consensus       111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~---~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~  187 (392)
T PRK12382        111 KFALLVVGRLILGFGESQLLTGALTWGLGLVGPK---HSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVL  187 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc---ccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence            7888999999999999988888888999999999   999999999999999999999998876    898876665444


Q ss_pred             HH
Q psy13786        208 SF  209 (219)
Q Consensus       208 ~~  209 (219)
                      .+
T Consensus       188 ~~  189 (392)
T PRK12382        188 PL  189 (392)
T ss_pred             HH
Confidence            33

>PRK10133 L-fucose transporter; Provisional

Probab=99.78  E-value=2.2e-17  Score=135.40  Aligned_cols=136  Identities=15%  Similarity=0.054  Sum_probs=117.1

Q ss_pred             Hhhhhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHH---H
Q psy13786         55 LPGVAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLM---A  128 (219)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~---~  128 (219)
                      +..+..++......+..|.++   |.++.+.++..+.+.+++.+++++.|++.||+|||+++..+..++.++.+++   .
T Consensus        33 ~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~  112 (438)
T PRK10133         33 SLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA  112 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555555566677766   9999999999999999999999999999999999999999999999998875   4


Q ss_pred             hhhhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhh
Q psy13786        129 TKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGA  193 (219)
Q Consensus       129 ~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  193 (219)
                      .+++++.++++|+++|++.+...+..+.++.|..|++   +|.+.++..+..+.+|..+++.++.
T Consensus       113 ~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~---~~~~~~s~~~~~~~~G~~~g~~~g~  174 (438)
T PRK10133        113 EIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES---SGHFRLNLAQTFNSFGAIIAVVFGQ  174 (438)
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999987777   7777888899999999988887753

>PRK11043 putative transporter; Provisional

Probab=99.78  E-value=1.8e-17  Score=134.54  Aligned_cols=151  Identities=17%  Similarity=0.134  Sum_probs=131.4

Q ss_pred             cccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHH
Q psy13786         63 SFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYIS  139 (219)
Q Consensus        63 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (219)
                      ....+.+.+|.+.   |.++.+.++..+++.++..+++++.|+++||+|||+.+..+.++..++.+...++++++.+.+.
T Consensus        21 ~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  100 (401)
T PRK11043         21 ATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVL  100 (401)
T ss_pred             HHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            3445556666555   8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHH
Q psy13786        140 RLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLV  215 (219)
Q Consensus       140 ~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~  215 (219)
                      |++.|++.+...+....++.|.+|++   +|++..+..+....+|..++|.+++.+    +||+.+++.++..++..+..
T Consensus       101 ~~l~G~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~  177 (401)
T PRK11043        101 RFVQAVGVCSAAVIWQALVIDRYPAQ---KANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPT  177 (401)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence            99999998877777788999999999   899999988888888999999888876    99999998887776665544


Q ss_pred             H
Q psy13786        216 A  216 (219)
Q Consensus       216 ~  216 (219)
                      +
T Consensus       178 ~  178 (401)
T PRK11043        178 L  178 (401)
T ss_pred             H
Confidence            3

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.78  E-value=1.4e-17  Score=135.59  Aligned_cols=161  Identities=14%  Similarity=0.043  Sum_probs=137.3

Q ss_pred             HHHHhhhhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHH
Q psy13786         52 IVILPGVAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMA  128 (219)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~  128 (219)
                      .+....+..++......+..|.++   |.++.+.+++.+.+.+++.+++++.|++.||+|||+++.++.++.+++.+++.
T Consensus         7 ~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~   86 (410)
T TIGR00885         7 LITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFW   86 (410)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            334445556666667677888777   99999999999999999999999999999999999999999999999988764


Q ss_pred             h---hhhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----------
Q psy13786        129 T---KSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----------  195 (219)
Q Consensus       129 ~---~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----------  195 (219)
                      .   .++++.+++.|++.|++.|...+..++++.+..|++   +|++..++.+...++|..++|.++..+          
T Consensus        87 ~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~  163 (410)
T TIGR00885        87 PAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPES---TATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQ  163 (410)
T ss_pred             HHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchh
Confidence            4   468899999999999999999999999999999999   999999999999999999998886644          


Q ss_pred             --------------------hhHHHHHHHHHHHHHHHHHH
Q psy13786        196 --------------------WYTTVAYIGAFVSFLSLVLV  215 (219)
Q Consensus       196 --------------------~w~~~~~~~~~~~~~~~~~~  215 (219)
                                          +||++|++.+++.++..+..
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~  203 (410)
T TIGR00885       164 DVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI  203 (410)
T ss_pred             hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                39999988887666654443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.78  E-value=2.7e-17  Score=133.54  Aligned_cols=154  Identities=24%  Similarity=0.240  Sum_probs=128.1

Q ss_pred             hhhccccccccchhhcc---cCChhh-----HHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhh
Q psy13786         59 APGMSFGFPAVALPQMS---YLTIDQ-----ASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATK  130 (219)
Q Consensus        59 ~~~~~~~~~~~~~~~~~---~~~~~~-----~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~  130 (219)
                      ..+.......+.+|.+.   |.+..+     .+++.+...++..+++++.|+++||+|||+++..+.+...++.++....
T Consensus        25 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~  104 (408)
T PRK09874         25 LTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLA  104 (408)
T ss_pred             HHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445556666655   666544     4788899999999999999999999999999999999999998888889


Q ss_pred             hhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHH
Q psy13786        131 SDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAF  206 (219)
Q Consensus       131 ~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~  206 (219)
                      ++++.+++.|++.|++.+ ..+....++.|.+|++   +|+++++..+....+|..++|.+++.+    +||+.+++.++
T Consensus       105 ~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~  180 (408)
T PRK09874        105 QNIWQFLILRALLGLLGG-FVPNANALIATQVPRN---KSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITAS  180 (408)
T ss_pred             hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            999999999999999755 5677778889999999   999999999999999999999998876    89999998887


Q ss_pred             HHHHHHHHHH
Q psy13786        207 VSFLSLVLVA  216 (219)
Q Consensus       207 ~~~~~~~~~~  216 (219)
                      ..++..+..+
T Consensus       181 ~~~~~~~~~~  190 (408)
T PRK09874        181 VLFLCFLVTL  190 (408)
T ss_pred             HHHHHHHHHH
Confidence            7666655443

>KOG0255|consensus

Probab=99.77  E-value=7e-18  Score=141.37  Aligned_cols=135  Identities=23%  Similarity=0.197  Sum_probs=123.9

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAA  155 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~  155 (219)
                      +.+.....+..+++.+|..+|++++|+++||+|||++++++.++..++.+..++++|++.+.+.|++.|++.++......
T Consensus       114 c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~  193 (521)
T KOG0255|consen  114 CDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGF  193 (521)
T ss_pred             eCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhH
Confidence            77888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHH
Q psy13786        156 VYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF--WYTTVAYIGAFVSFLSLVL  214 (219)
Q Consensus       156 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~--~w~~~~~~~~~~~~~~~~~  214 (219)
                      .++.|+++++   +|+.+..+ ......++.+++..++++  +||+.+++..++.++.+++
T Consensus       194 ~~~~E~~~~~---~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~  250 (521)
T KOG0255|consen  194 GLVAEIVSPK---QRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLL  250 (521)
T ss_pred             hhheeecCcc---hhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999   99999999 666666666666666666  8999999998888777655

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.76  E-value=4.5e-17  Score=131.41  Aligned_cols=123  Identities=12%  Similarity=0.192  Sum_probs=117.6

Q ss_pred             cCChhh-HHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhh
Q psy13786         76 YLTIDQ-ASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPA  154 (219)
Q Consensus        76 ~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~  154 (219)
                      |+++++ .|.+.+++..++.++.++.|+++||+|.|+++.++.+.+.+..++.+++++...+.+.|++.|++.|... ..
T Consensus        57 glT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~  135 (511)
T TIGR00806        57 NFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AY  135 (511)
T ss_pred             CCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence            999999 9999999999999999999999999999999999999999999999999999999999999999999998 99


Q ss_pred             hhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHH
Q psy13786        155 AVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF---WYTTVAY  202 (219)
Q Consensus       155 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~w~~~~~  202 (219)
                      ..++..++|++   +|+++++..+.+..+|.+++++++..+   +||+...
T Consensus       136 ~syI~~WfP~k---ER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~  183 (511)
T TIGR00806       136 SSYIFSLVPPS---RYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYST  183 (511)
T ss_pred             HHHHHHHCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence            99999999999   999999999999999999999998877   8876543

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.76  E-value=2.6e-17  Score=131.74  Aligned_cols=144  Identities=12%  Similarity=0.073  Sum_probs=117.2

Q ss_pred             ccccccchhh-cc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhh-hHHHHHH
Q psy13786         64 FGFPAVALPQ-MS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKS-DLINLYI  138 (219)
Q Consensus        64 ~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  138 (219)
                      .....+..|. +.   |.++.+.+++.+...++..+++++.|+++||+|||+.+.++.++..++.+++++++ +++.+++
T Consensus        17 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   96 (366)
T TIGR00886        17 WFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLL   96 (366)
T ss_pred             HHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            3444566664 33   99999999999999999999999999999999999999999999999999999999 9999999


Q ss_pred             HHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh--------------hhHHHH-HH
Q psy13786        139 SRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF--------------WYTTVA-YI  203 (219)
Q Consensus       139 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~--------------~w~~~~-~~  203 (219)
                      .|++.|++.+ ..+....++.|++|++   +|++.+++......+|..+++.++..+              +||+.+ +.
T Consensus        97 ~~~~~g~~~~-~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~  172 (366)
T TIGR00886        97 LRLFIGIAGG-SFASCMPWISFFFPKK---IQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIV  172 (366)
T ss_pred             HHHHHHHhch-hhHhHHHHHHHhcCHh---hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHH
Confidence            9999999865 4566788999999999   999999998866666666555554332              599988 43


Q ss_pred             HHHHHHHH
Q psy13786        204 GAFVSFLS  211 (219)
Q Consensus       204 ~~~~~~~~  211 (219)
                      .++...+.
T Consensus       173 ~~~~~~~~  180 (366)
T TIGR00886       173 PAGILLLP  180 (366)
T ss_pred             HHHHHHHH
Confidence            34444333

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.76  E-value=2.1e-17  Score=137.59  Aligned_cols=152  Identities=22%  Similarity=0.347  Sum_probs=124.0

Q ss_pred             ccccccccchhhcc-cCC-hhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHH
Q psy13786         62 MSFGFPAVALPQMS-YLT-IDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYIS  139 (219)
Q Consensus        62 ~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (219)
                      +.....+..++.+. ++. ..+..|+.+...++..+++++.|+++|.+|||..++.+.++..++.+.++.++|...++.+
T Consensus        58 ~~~~~~a~~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag  137 (599)
T PF06609_consen   58 FVLVLPASILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAG  137 (599)
T ss_pred             HHHhccHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHH
Confidence            33434444555544 222 3567899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHH
Q psy13786        140 RLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLV  215 (219)
Q Consensus       140 ~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~  215 (219)
                      ..+.|++.|... .....++|..|.|   .|..+.++......+....++.++..+    +|||.|++..+...+.+++.
T Consensus       138 ~~l~GvgaG~~~-~~~~~isEl~p~k---~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~  213 (599)
T PF06609_consen  138 MVLYGVGAGVQE-LAALAISELVPNK---WRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLI  213 (599)
T ss_pred             HHHHHHhhHHHH-HHHHHHHHhcccc---hhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHH
Confidence            999999976654 4566789999999   999888877776666666777777655    89999999998887777665


Q ss_pred             Hh
Q psy13786        216 AM  217 (219)
Q Consensus       216 ~~  217 (219)
                      ++
T Consensus       214 ~~  215 (599)
T PF06609_consen  214 FF  215 (599)
T ss_pred             HH
Confidence            44

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.75  E-value=7.7e-17  Score=133.46  Aligned_cols=137  Identities=12%  Similarity=0.079  Sum_probs=122.9

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhh-hCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDK-YGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPA  154 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~  154 (219)
                      |++..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.+++.++.+++++++.+.+.+.+.|++.|...+..
T Consensus        44 g~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~  123 (475)
T TIGR00924        44 GFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANP  123 (475)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCH
Confidence            7899999999999999999999999999999 899999999999999999999998888888899999999999999999


Q ss_pred             hhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHH
Q psy13786        155 AVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSL  212 (219)
Q Consensus       155 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~  212 (219)
                      .++++|.+|++|..+|+++.++.+.+.++|..++|.+++.+    +|++.|.+.++..++..
T Consensus       124 ~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~  185 (475)
T TIGR00924       124 SSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGL  185 (475)
T ss_pred             HHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence            99999999876211388899999999999999999999887    89999998776555443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.75  E-value=4.4e-17  Score=135.17  Aligned_cols=131  Identities=14%  Similarity=0.102  Sum_probs=114.9

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhh-hCCchhhhHhhHHHHHHHHHHHhhhhHHH-HHHHHHHHhhhhhcchhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDK-YGRKSALMITNVPSLCGWLLMATKSDLIN-LYISRLLSGLSVGLATTP  153 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~G~~~~~~~~~  153 (219)
                      |.+..+.+++.+.+.....+..+++|+++|| +||||++.++.+++.++.++++++.+... +++.|+++|++.|...+.
T Consensus        46 g~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~  125 (489)
T PRK10207         46 GFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKAN  125 (489)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCC
Confidence            8899999999999998888888999999999 99999999999999999999998766444 557899999999999999


Q ss_pred             hhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHH
Q psy13786        154 AAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFV  207 (219)
Q Consensus       154 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~  207 (219)
                      ..+++.|.+|+++. +|+++.++++.+.++|..++|.+++++    |||+.|++.++.
T Consensus       126 ~~~li~~~~p~~~~-~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~  182 (489)
T PRK10207        126 PASLLSKCYPPKDP-RLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAG  182 (489)
T ss_pred             HHHHHHHhcCCCch-hhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence            99999999988710 247788899999999999999988888    999999886543

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.75  E-value=6.4e-17  Score=130.50  Aligned_cols=138  Identities=14%  Similarity=0.081  Sum_probs=124.1

Q ss_pred             Hhhhhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhh
Q psy13786         55 LPGVAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKS  131 (219)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~  131 (219)
                      ...+..+.......+.+|.+.   |.++.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++...+++++
T Consensus        13 ~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~   92 (381)
T PRK03633         13 CGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMV   92 (381)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            334455566666677777776   88999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        132 DLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       132 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                      +++.+++.|++.|++.+...+.....+.+..+++   +|+++++.++.+..+|..++|.+++.+
T Consensus        93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~g~~~~~~l  153 (381)
T PRK03633         93 GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSR---NRGRLLAAYMMVYYLGTVLGQLLVSKV  153 (381)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999988888888888889998   999999999999999999999999877

>KOG2533|consensus

Probab=99.75  E-value=3.5e-17  Score=134.48  Aligned_cols=140  Identities=15%  Similarity=0.059  Sum_probs=129.8

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAA  155 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~  155 (219)
                      ++...+.+.+.+++.++++++.++++.+.||++..+.+....+++.+..++....+|++.+++.|++.|+..+..+|...
T Consensus        77 ~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~  156 (495)
T KOG2533|consen   77 KLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVV  156 (495)
T ss_pred             chhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHH
Confidence            67888999999999999999999999999999999999988888888888888899999999999999999999999999


Q ss_pred             hhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----------hhHHHHHHHHHHHHHHHHHHHhh
Q psy13786        156 VYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----------WYTTVAYIGAFVSFLSLVLVAMI  218 (219)
Q Consensus       156 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----------~w~~~~~~~~~~~~~~~~~~~~~  218 (219)
                      .+++.++.++   +|++.++++.++..+|++++.+++..+          ||||.|++.++++++..++.+++
T Consensus       157 ~~lg~wy~~~---e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~  226 (495)
T KOG2533|consen  157 AILGNWYGKS---ERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFF  226 (495)
T ss_pred             HHHHhhcChh---hhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEE
Confidence            9999999999   999999999999999999999998872          99999999999988887766543

>KOG0252|consensus

Probab=99.73  E-value=1.4e-17  Score=132.06  Aligned_cols=171  Identities=15%  Similarity=0.118  Sum_probs=140.7

Q ss_pred             CCchHHHHHHHHHHHHhhhhhhccccccccchhhcc-----------cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhC
Q psy13786         40 TPTLFRLIYLGLIVILPGVAPGMSFGFPAVALPQMS-----------YLTIDQASWFASISAITMPIGCLLSGPIIDKYG  108 (219)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~G  108 (219)
                      ....|+....+.+..++.+.++|+...++...+.+.           ++++...+.+..+.++|.++|++.+|++.||+|
T Consensus        33 ~g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~G  112 (538)
T KOG0252|consen   33 EGLQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFG  112 (538)
T ss_pred             cchhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            345688888888999999999999998887766554           256777889999999999999999999999999


Q ss_pred             CchhhhHhhHHHHHHHHHHHhh-------hhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHH
Q psy13786        109 RKSALMITNVPSLCGWLLMATK-------SDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIAL  181 (219)
Q Consensus       109 rr~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  181 (219)
                      ||+++...++++.++.+++++.       .-++.+...|++.|+|.|+-+|...+..+|....+   .||...+..-+.+
T Consensus       113 RK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~---~RGa~iaavFa~Q  189 (538)
T KOG0252|consen  113 RKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKK---TRGAFIAAVFAMQ  189 (538)
T ss_pred             chhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhc---cccceeEEEEEec
Confidence            9999999999999999877763       12467788899999999999999999999999999   9999998776666


Q ss_pred             HHHHHHHHHHhhhh-------------------hhHHHHHHHHHHHHHHHH
Q psy13786        182 TSGILLSYLTGAFF-------------------WYTTVAYIGAFVSFLSLV  213 (219)
Q Consensus       182 ~~g~~~~~~~~~~~-------------------~w~~~~~~~~~~~~~~~~  213 (219)
                      +.|...|.+++..+                   -||..+.+..+++++.+.
T Consensus       190 g~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly  240 (538)
T KOG0252|consen  190 GFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLY  240 (538)
T ss_pred             chhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666665554433                   488888877776655543

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.73  E-value=1.2e-16  Score=129.47  Aligned_cols=125  Identities=14%  Similarity=0.116  Sum_probs=111.3

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAA  155 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~  155 (219)
                      +.++.+.+++.+.+.+++.+.+++.|+++||+|||+++.++.++.+++.+.+.+..+.   ++.|+++|++.+...|...
T Consensus        34 ~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~  110 (393)
T PRK11195         34 HYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKY  110 (393)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence            7788899999999999999999999999999999999999999998888877766654   6789999999999999999


Q ss_pred             hhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHH
Q psy13786        156 VYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF---WYTTVAYIGAF  206 (219)
Q Consensus       156 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~w~~~~~~~~~  206 (219)
                      +++.|++|++   +|++++++.+....+|..++|.+++.+   .|+..+.+.+.
T Consensus       111 a~i~~~~~~~---~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~  161 (393)
T PRK11195        111 GILTELLPGE---KLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCAL  161 (393)
T ss_pred             HHHHHHcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999   999999999999999999999999988   44444444443

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.73  E-value=4.2e-17  Score=138.95  Aligned_cols=159  Identities=14%  Similarity=0.063  Sum_probs=133.5

Q ss_pred             Hhhhhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhh
Q psy13786         55 LPGVAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKS  131 (219)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~  131 (219)
                      +..+......+.....++.+.   ++++.+.|++.+.+.+++.++.++.+++.||+|||+.+.++.++++++++++++.+
T Consensus        40 ~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alph  119 (633)
T TIGR00805        40 CAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPH  119 (633)
T ss_pred             HHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChH
Confidence            344444444556666777666   89999999999999999999999999999999999999999999999999887653


Q ss_pred             ---------------------------------------------------hHHHHHHHHHHHhhhhhcchhhhhhhhhh
Q psy13786        132 ---------------------------------------------------DLINLYISRLLSGLSVGLATTPAAVYAAE  160 (219)
Q Consensus       132 ---------------------------------------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~  160 (219)
                                                                         .+..++++|+++|+|.+..++...+++.|
T Consensus       120 f~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d  199 (633)
T TIGR00805       120 FLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDD  199 (633)
T ss_pred             HhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhc
Confidence                                                               24567789999999999999999999999


Q ss_pred             ccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh-----h---------------------hHHHHHHHHHHHHHHHHH
Q psy13786        161 CITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF-----W---------------------YTTVAYIGAFVSFLSLVL  214 (219)
Q Consensus       161 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~---------------------w~~~~~~~~~~~~~~~~~  214 (219)
                      ++|++   +|++.+++.+....+|..+++++++.+     +                     |+..|++.+++.++..+.
T Consensus       200 ~~~~~---~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~  276 (633)
T TIGR00805       200 FAKSK---NSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIP  276 (633)
T ss_pred             cCCcc---ccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999   999999999999999999999888765     1                     666788777776666554


Q ss_pred             HH
Q psy13786        215 VA  216 (219)
Q Consensus       215 ~~  216 (219)
                      .+
T Consensus       277 l~  278 (633)
T TIGR00805       277 FF  278 (633)
T ss_pred             HH
Confidence            33

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.73  E-value=1.9e-16  Score=127.12  Aligned_cols=157  Identities=17%  Similarity=0.084  Sum_probs=123.9

Q ss_pred             hhhhccccccccchhhcc----cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhH-hhHHHHHHHHHHHhhhh
Q psy13786         58 VAPGMSFGFPAVALPQMS----YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMI-TNVPSLCGWLLMATKSD  132 (219)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~-~~~~~~~~~~~~~~~~~  132 (219)
                      +..+...+...+.+|.+.    |.++.+.+++.+.+.+...+.+++.|+++||+||||.++. +.+...++.++.+++++
T Consensus         7 ~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~   86 (375)
T TIGR00899         7 FLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRN   86 (375)
T ss_pred             HHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcch
Confidence            333444444455555432    8899999999999999999999999999999999987654 55666677778888899


Q ss_pred             HHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhH--HHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHH
Q psy13786        133 LINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSL--STWSTIALTSGILLSYLTGAFF----WYTTVAYIGAF  206 (219)
Q Consensus       133 ~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~  206 (219)
                      ++.+++.|++.|.+.+...+....+..|..|++   .|++.  .+......++|..++|.+++.+    +||+.|++.++
T Consensus        87 ~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~  163 (375)
T TIGR00899        87 YFLLLVLGVLLSSFASTANPQLFALAREHADRT---GREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAAL  163 (375)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhc---chhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHH
Confidence            999989999988887777888888888988877   67654  5777778888999999888876    89999999888


Q ss_pred             HHHHHHHHHHh
Q psy13786        207 VSFLSLVLVAM  217 (219)
Q Consensus       207 ~~~~~~~~~~~  217 (219)
                      +.++..+..++
T Consensus       164 ~~~~~~~~~~~  174 (375)
T TIGR00899       164 AFVLCGVLVWL  174 (375)
T ss_pred             HHHHHHHHHHH
Confidence            77666655443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PTZ00207 hypothetical protein; Provisional

Probab=99.72  E-value=6.6e-16  Score=129.28  Aligned_cols=138  Identities=18%  Similarity=0.142  Sum_probs=116.8

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhh------hhHHHHHHHHHHHhhhhhc
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATK------SDLINLYISRLLSGLSVGL  149 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~G~~~~~  149 (219)
                      |++..+.+++.+.. ....+.+++.|++.||+|||+++.++.++..++.++++++      ++++.+.+.|++.|++.+.
T Consensus        58 gls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~  136 (591)
T PTZ00207         58 NLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCML  136 (591)
T ss_pred             CcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHH
Confidence            99999999888763 3444677789999999999999999999999999999986      6899999999999999998


Q ss_pred             chhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHH-HHHHhhhh--hhHHHHHHHHHHHHHHHHHHHhh
Q psy13786        150 ATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILL-SYLTGAFF--WYTTVAYIGAFVSFLSLVLVAMI  218 (219)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~~--~w~~~~~~~~~~~~~~~~~~~~~  218 (219)
                      ..+.....+.+++| +   +||++.|+.....++|+.+ +++.....  +|+..|++.++..++..++.+++
T Consensus       137 ~~~~~~~~i~~~Fp-~---~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~  204 (591)
T PTZ00207        137 FDLGAVVTVLSVFP-S---NRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVF  204 (591)
T ss_pred             HHHHHHHHHHHhCh-h---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence            88888999999997 5   6999999999999999975 55555555  88888888888877776665543

>KOG3764|consensus

Probab=99.71  E-value=3.5e-17  Score=127.71  Aligned_cols=141  Identities=19%  Similarity=0.193  Sum_probs=132.9

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAA  155 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~  155 (219)
                      +-++.++|++.+...+.+.+..++.|.+.||+|+|-++++|.+.+..+.+++++.++++++++.|.++|+|.+...+...
T Consensus       102 ~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsgl  181 (464)
T KOG3764|consen  102 DRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGL  181 (464)
T ss_pred             cccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhH
Confidence            56678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhh
Q psy13786        156 VYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVAMI  218 (219)
Q Consensus       156 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~~  218 (219)
                      +++++.+|+++  +|++++|+.-.+.++|.+++|++++.+    |.+.+|+++++++++...+-++.
T Consensus       182 amlAd~f~~d~--er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~v  246 (464)
T KOG3764|consen  182 AMLADVFPEDN--ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLV  246 (464)
T ss_pred             HHHHHHcccch--hhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHhe
Confidence            99999999983  689999999999999999999999988    99999999999999888776653

>KOG0569|consensus

Probab=99.70  E-value=1e-15  Score=124.71  Aligned_cols=173  Identities=28%  Similarity=0.377  Sum_probs=141.8

Q ss_pred             hHHHHHHHHHHHHhhhhhhccccccccchhhcc-----------c--CChhh----HHHHHHHHHHHHHHHHhhHhHhhh
Q psy13786         43 LFRLIYLGLIVILPGVAPGMSFGFPAVALPQMS-----------Y--LTIDQ----ASWFASISAITMPIGCLLSGPIID  105 (219)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~--~~~~~----~~~~~~~~~~~~~~~~~~~g~l~d  105 (219)
                      .++.....+...++.+-++|.....++..+.+.           |  .++++    .+.+.+.+.+|.++|+...++++|
T Consensus         6 t~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~   85 (485)
T KOG0569|consen    6 TRRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLAD   85 (485)
T ss_pred             cHHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556666666777888888887775544333           3  33333    356778899999999999999999


Q ss_pred             hhCCchhhhHhhHHHHHHHHHHHh---hhhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHH
Q psy13786        106 KYGRKSALMITNVPSLCGWLLMAT---KSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALT  182 (219)
Q Consensus       106 ~~Grr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  182 (219)
                      |+|||..+.++.++..++.++..+   .+++.+++++|++.|+..|......+.|+.|..|++   .||....+.+.+..
T Consensus        86 ~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~---~RG~~g~~~~~~~~  162 (485)
T KOG0569|consen   86 RFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKN---LRGALGTLLQIGVV  162 (485)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhh---hccHHHHHHHHHHH
Confidence            999999999998888887777665   578899999999999999999999999999999999   99999999999999


Q ss_pred             HHHHHHHHHhhhh------hhHHHHHHHHHHHHHHHHHHHhh
Q psy13786        183 SGILLSYLTGAFF------WYTTVAYIGAFVSFLSLVLVAMI  218 (219)
Q Consensus       183 ~g~~~~~~~~~~~------~w~~~~~~~~~~~~~~~~~~~~~  218 (219)
                      +|..++..++..-      .|.+.+....+++++.++...++
T Consensus       163 ~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~  204 (485)
T KOG0569|consen  163 IGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFL  204 (485)
T ss_pred             HHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcC
Confidence            9999997766543      79999999988888887776553

>KOG2532|consensus

Probab=99.70  E-value=2.9e-16  Score=128.63  Aligned_cols=139  Identities=17%  Similarity=0.219  Sum_probs=128.8

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhh--hHHHHHHHHHHHhhhhhcchhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKS--DLINLYISRLLSGLSVGLATTP  153 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~~~~~~~  153 (219)
                      +.++.+.+++.+.++.|+++++.+.|++.||+|-|+++.++.++.++..++...+.  +++.+++.|+++|++.|..+|.
T Consensus        69 ~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa  148 (466)
T KOG2532|consen   69 DWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPA  148 (466)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhh
Confidence            78899999999999999999999999999999999999999999999999988764  4457789999999999999999


Q ss_pred             hhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHHHHHHh
Q psy13786        154 AAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF-----WYTTVAYIGAFVSFLSLVLVAM  217 (219)
Q Consensus       154 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~~~~~~  217 (219)
                      ...+...+.|++   +|++..++...+..+|.+++-++++.+     ||+++|++.+++.++..++.++
T Consensus       149 ~~~i~~~W~P~~---Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~  214 (466)
T KOG2532|consen  149 IGSILAKWAPPN---ERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFL  214 (466)
T ss_pred             hhceeeeECCHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHH
Confidence            999999999999   999999999999999999998888887     8999999999999888776654

>TIGR00896 CynX cyanate transporter

Probab=99.70  E-value=9.7e-16  Score=122.44  Aligned_cols=142  Identities=13%  Similarity=0.176  Sum_probs=120.7

Q ss_pred             cccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHH
Q psy13786         65 GFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRL  141 (219)
Q Consensus        65 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (219)
                      ....+.+|.+.   |.++.+.++..+.+.++..+++++.|+++||+|||+++.++.++..++.+.. ..++.+.+++.|+
T Consensus        17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~   95 (355)
T TIGR00896        17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTA   95 (355)
T ss_pred             ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHH
Confidence            34456777666   8999999999999999999999999999999999999999988888877776 6788889999999


Q ss_pred             HHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh------hhHHHHHHHHHHHHHH
Q psy13786        142 LSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF------WYTTVAYIGAFVSFLS  211 (219)
Q Consensus       142 l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~------~w~~~~~~~~~~~~~~  211 (219)
                      +.|++.+...+..+.++.|.+| +   +|+++++..+....+|..+++.+...+      +||+.|.+.++..++.
T Consensus        96 ~~g~g~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~  167 (355)
T TIGR00896        96 LIGVGIAIINVLLPSLIKRDFP-Q---RVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLA  167 (355)
T ss_pred             HHHHHHHHHhccchHHHHHhCc-c---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            9999998888888888888886 6   699999999999999998888877665      3898887766554433

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.70  E-value=1.4e-16  Score=129.91  Aligned_cols=137  Identities=17%  Similarity=0.219  Sum_probs=118.2

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHh-----hhhHHHHHHHHHHHhhhhhcc
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMAT-----KSDLINLYISRLLSGLSVGLA  150 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~G~~~~~~  150 (219)
                      +.++.+.+++.+...++..+++++.|+++||+|||+++..+.++.+++.+....     .++++.+.+.|++.|++.+..
T Consensus        48 ~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~  127 (417)
T PRK10489         48 TGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLG  127 (417)
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Confidence            678999999999999999999999999999999999999888777766655432     467888889999999998888


Q ss_pred             hhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHH
Q psy13786        151 TTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLV  215 (219)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~  215 (219)
                      .+...+++.|..|++   +|+++.++.+....+|..++|.+++.+    +|++.+++.++..++..+..
T Consensus       128 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~  193 (417)
T PRK10489        128 VTALLAATPALVGRE---NLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPL  193 (417)
T ss_pred             HHHHhhhhhhccCHH---HHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            888889999999999   999999999999999999999998876    79999888776666554443

>TIGR00897 2A0118 polyol permease family

Probab=99.70  E-value=1.1e-15  Score=124.27  Aligned_cols=125  Identities=14%  Similarity=0.119  Sum_probs=107.1

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHH---h-hhhHHHHHHHHHHHhhhhhcch
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMA---T-KSDLINLYISRLLSGLSVGLAT  151 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~l~G~~~~~~~  151 (219)
                      |.++.+.++..+.+.++..+++++.|++.||+||||++..+..+..++.+++.   . .++++.+++.|++.|++.+...
T Consensus        44 g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~  123 (402)
T TIGR00897        44 GLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFA  123 (402)
T ss_pred             CCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHH
Confidence            99999999999999999999999999999999999999999998888776543   3 3578888899999999988777


Q ss_pred             hhhhhhhhhccCCCCccchhhHHHHHHHHHHHHH-HHHHHHhhhh----hhHHHHHH
Q psy13786        152 TPAAVYAAECITIHNTDLRGSLSTWSTIALTSGI-LLSYLTGAFF----WYTTVAYI  203 (219)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~~----~w~~~~~~  203 (219)
                      +....++.+.+|++   +|++++|+.+...++|. .++|.+++.+    +|+..++.
T Consensus       124 ~~~~~~~~~~~~~~---~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~  177 (402)
T TIGR00897       124 YSFLVWVVYNTKQD---NLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS  177 (402)
T ss_pred             hHHHHHHHHhCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence            77788889999999   99999999999999996 5788887665    65544443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.69  E-value=2.5e-16  Score=108.67  Aligned_cols=128  Identities=23%  Similarity=0.288  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCC
Q psy13786         87 SISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHN  166 (219)
Q Consensus        87 ~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~  166 (219)
                      +...++..+++++.|++.||+|||+.+..+.....++.+.....++.+.+.+.+++.|++.+...+....++.|.+|++ 
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-   83 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE-   83 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh-
Confidence            4456788899999999999999999999999998888888888889999999999999999988999999999999999 


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHh
Q psy13786        167 TDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVAM  217 (219)
Q Consensus       167 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~  217 (219)
                        +|++..++.+....+|..++|.+.+.+    +|++.+++.+...++..+..++
T Consensus        84 --~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (141)
T TIGR00880        84 --ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAF  136 (141)
T ss_pred             --hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhh
Confidence              999999999999999999999998877    7999998888777766655543

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.68  E-value=3.2e-15  Score=124.61  Aligned_cols=136  Identities=14%  Similarity=0.152  Sum_probs=112.9

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhh-hCCchhhhHhhHHHHHHHHHHHhhh-hHHHHHHHHHHHhhhhhcchhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDK-YGRKSALMITNVPSLCGWLLMATKS-DLINLYISRLLSGLSVGLATTP  153 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~~~~~~~~~  153 (219)
                      |+++.+.++..+.+........+++|+++|| +|||+.+.++.++..++..++++++ +.+.+.+.+++.|++.|...+.
T Consensus        53 g~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~  132 (500)
T PRK09584         53 GMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKAN  132 (500)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCC
Confidence            8899888888887776666666789999999 5999999999999999988888864 4566778899999999988888


Q ss_pred             hhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHH
Q psy13786        154 AAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSL  212 (219)
Q Consensus       154 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~  212 (219)
                      ..+++.|++|+++. +|..+.++++.+.++|..++|.+++++    |||+.|++.++..++..
T Consensus       133 ~~~l~~~~f~~~~~-~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~  194 (500)
T PRK09584        133 PSSLLSTCYEKDDP-RLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITV  194 (500)
T ss_pred             HHHHHHHhcCCCch-hhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence            88999999986510 345678888999999999999999888    89999998776545444

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.68  E-value=3.1e-15  Score=123.22  Aligned_cols=138  Identities=16%  Similarity=0.128  Sum_probs=111.2

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhh-CCchhhhHhhHHHHHHHHHHHhhh-hHHHHHHHHHHHhhhhhcchhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKY-GRKSALMITNVPSLCGWLLMATKS-DLINLYISRLLSGLSVGLATTP  153 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~~~~~~~~~  153 (219)
                      |+++.+.+.+.+.+.....++.+++|+++||+ ||||++.++.++..++.++.+..+ +...+.+...+..++.|...+.
T Consensus        41 gls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~  120 (493)
T PRK15462         41 KYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSN  120 (493)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhccccccc
Confidence            89999999999999999999999999999999 999999999999998887766533 2233444444555666767777


Q ss_pred             hhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHH
Q psy13786        154 AAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVL  214 (219)
Q Consensus       154 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~  214 (219)
                      ..++++|.+|+++. +|.++.++.+...++|+.++|.+.+++    ||++.|.+.++..++.++.
T Consensus       121 ~~alv~elfp~~~~-~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~  184 (493)
T PRK15462        121 VSCLLGELYEPTDP-RRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVI  184 (493)
T ss_pred             HHHHHHHHCCCCCc-cccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHH
Confidence            78999999987410 588899999999999999999999988    8999998876654444433

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.67  E-value=1.4e-15  Score=119.92  Aligned_cols=170  Identities=18%  Similarity=0.106  Sum_probs=132.5

Q ss_pred             HHHHHHHHHHHHhhhhhhccccccccchhhcccCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHH
Q psy13786         44 FRLIYLGLIVILPGVAPGMSFGFPAVALPQMSYLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCG  123 (219)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~  123 (219)
                      ++............++..+......+.++...|+|+.|.+++.++..+...+..++.|.+.||+|.|++...+.++..+-
T Consensus        13 ~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP   92 (417)
T COG2223          13 RRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIP   92 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHH
Confidence            33444444444444444333444444444222999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhh---hHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----h
Q psy13786        124 WLLMATKS---DLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----W  196 (219)
Q Consensus       124 ~~~~~~~~---~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~  196 (219)
                      ++..+++.   +++.+++.+++.|++. +.++...+++++++|++   ++|.++|++. ..++|..+...++..+    +
T Consensus        93 ~~~~~~a~~~~~~~~ll~~gll~G~~G-asFav~m~~~s~~fP~~---~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g  167 (417)
T COG2223          93 CLGLAFAVTYPSTWQLLVIGLLLGLAG-ASFAVGMPNASFFFPKE---KQGLALGIAG-AGNLGVAVAQLVAPLVAVAFG  167 (417)
T ss_pred             HHHHHHHccCCchHHHHHHHHHHhccc-ceehcccccccccCChh---hhhHHHHHhc-cccccHHHHHHHHHHHHHHHh
Confidence            99988864   4559999999999984 56788899999999999   9999999998 6777766665555554    6


Q ss_pred             ---hHHHHHHHHHHHHHHHHHHHhh
Q psy13786        197 ---YTTVAYIGAFVSFLSLVLVAMI  218 (219)
Q Consensus       197 ---w~~~~~~~~~~~~~~~~~~~~~  218 (219)
                         |+.+..+..+..++..+..++.
T Consensus       168 ~~~w~~~~~i~~~~l~v~~v~~~~~  192 (417)
T COG2223         168 FLAWRNVAGIYVVALAIAAVLAWLG  192 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               9988888887777777766653

>KOG2615|consensus

Probab=99.66  E-value=7.2e-16  Score=119.83  Aligned_cols=115  Identities=21%  Similarity=0.306  Sum_probs=106.9

Q ss_pred             CChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhhh
Q psy13786         77 LTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAV  156 (219)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~  156 (219)
                      .+..-.|.+.+.+.+.+.+.++.+|.++||+|||+++..+.+..++...+.+.+.|+..+++.|++.|+..|- ..+.-+
T Consensus        65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgn-l~v~rA  143 (451)
T KOG2615|consen   65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGN-LSVIRA  143 (451)
T ss_pred             ccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hHHHHH
Confidence            3455678999999999999999999999999999999999999999999999999997777889999999874 467789


Q ss_pred             hhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        157 YAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       157 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                      +++|+++++   +|+.+++..+..+++|.++||.+++++
T Consensus       144 iisdV~sek---~r~l~ms~v~~a~~lGfilGPmIGgyl  179 (451)
T KOG2615|consen  144 IISDVVSEK---YRPLGMSLVGTAFGLGFILGPMIGGYL  179 (451)
T ss_pred             HHHhhcChh---hccceeeeeehhhhcchhhcchhhhHH
Confidence            999999999   999999999999999999999999988

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.65  E-value=1.9e-14  Score=116.67  Aligned_cols=138  Identities=16%  Similarity=0.163  Sum_probs=112.7

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAA  155 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~  155 (219)
                      |.++.+.+++.+...++..++.++.|+++||+|||+.+..+.+...+........++.+.+++.+++.+++.+...+..+
T Consensus       248 ~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~  327 (393)
T PRK15011        248 HLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGM  327 (393)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888999888888888888999999999999999988877666555555555567777777888888887777767777


Q ss_pred             hhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHh
Q psy13786        156 VYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVAM  217 (219)
Q Consensus       156 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~  217 (219)
                      .+..|..|+    +|+++.++++....+|..++|.+++.+    +|+..+++.+++.++.++..++
T Consensus       328 ~~~~~~~p~----~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK15011        328 LYFQDLMPG----QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR  389 (393)
T ss_pred             HHHHHhCCC----CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            888898874    589999998888899999999998887    8999988888777777666554

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.64  E-value=4.1e-15  Score=119.00  Aligned_cols=134  Identities=16%  Similarity=0.042  Sum_probs=114.7

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhH--HHHHHHHHHHhhhhhcchhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDL--INLYISRLLSGLSVGLATTP  153 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~G~~~~~~~~~  153 (219)
                      +.++.+.+...+...++..+++++.|++.||+|||+.+.++.+...++.++..+.++.  ..+....++.|++.+...+.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  315 (377)
T TIGR00890       236 GLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISL  315 (377)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhc
Confidence            7888888999999999999999999999999999999999888888887777665532  23445677888888888888


Q ss_pred             hhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHH
Q psy13786        154 AAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSL  212 (219)
Q Consensus       154 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~  212 (219)
                      .+.++.|.+|++   +|++..++.+....+|..++|.+.+.+    ||++.|.+.+++.+++.
T Consensus       316 ~~~~~~~~~~~~---~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       316 FPSLVSDIFGPA---NSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             cHHHHHHHhhhh---hhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence            888999999999   999999999999999999999998877    89999988877766543

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.63  E-value=8.8e-15  Score=125.86  Aligned_cols=133  Identities=14%  Similarity=0.048  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhhhhhhhc
Q psy13786         82 ASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAEC  161 (219)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~  161 (219)
                      ......+..++.+++.++.|+++||+|||++++++.++.++++++.++.++...+++.+++.|++.+...+...++++|+
T Consensus       597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl  676 (742)
T TIGR01299       597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL  676 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556677899999999999999999999999999999999999888888877788888888988888889999999999


Q ss_pred             cCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHHHHHHHh
Q psy13786        162 ITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF---WYTTVAYIGAFVSFLSLVLVAM  217 (219)
Q Consensus       162 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~  217 (219)
                      +|++   .|++++|+.+....+|.+++|.+++.+   +...+|++.+++.++..++.++
T Consensus       677 ~Pt~---~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~  732 (742)
T TIGR01299       677 YPSD---KRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALK  732 (742)
T ss_pred             cCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            9999   999999999999999999999998866   4456777777776666555443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.63  E-value=5.9e-15  Score=118.79  Aligned_cols=134  Identities=25%  Similarity=0.346  Sum_probs=109.1

Q ss_pred             CChhhHHHHHHH-----HHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHH--------HHHHHHHHH
Q psy13786         77 LTIDQASWFASI-----SAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLI--------NLYISRLLS  143 (219)
Q Consensus        77 ~~~~~~~~~~~~-----~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~  143 (219)
                      .++.+.+...+.     ..++..+++++.|+++||+|||+++..+.++..++.+++++++++.        .+++.|+++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~  106 (394)
T TIGR00883        27 SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQ  106 (394)
T ss_pred             CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHH
Confidence            334555544433     3344457899999999999999999999999999999999888765        477889999


Q ss_pred             hhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh------------hhHHHHHHHHHHHHHH
Q psy13786        144 GLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF------------WYTTVAYIGAFVSFLS  211 (219)
Q Consensus       144 G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~------------~w~~~~~~~~~~~~~~  211 (219)
                      |++.+...+....++.|.+|++   +|++..+..+.+..+|..+++.++..+            +||+.+++.+++.++.
T Consensus       107 G~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  183 (394)
T TIGR00883       107 GFSLGGEWGGAALYLAEYAPPG---KRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIG  183 (394)
T ss_pred             HhhccccccccHHHhhhcCCcc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHH
Confidence            9999999999999999999999   999999999999999999888765432            7999998877665554


Q ss_pred             HH
Q psy13786        212 LV  213 (219)
Q Consensus       212 ~~  213 (219)
                      ..
T Consensus       184 ~~  185 (394)
T TIGR00883       184 LY  185 (394)
T ss_pred             HH
Confidence            43

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK12382 putative transporter; Provisional

Probab=99.62  E-value=4.3e-14  Score=114.42  Aligned_cols=134  Identities=15%  Similarity=0.149  Sum_probs=116.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhhhhhhh
Q psy13786         81 QASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAE  160 (219)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~  160 (219)
                      +.+...+...++..++++..|++.||+||||.+..+..+..++.++..+.++.+...+..++.|++.+...+.....+.|
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~  329 (392)
T PRK12382        250 MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVK  329 (392)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            35566677788889999999999999999999999988888888887778888888888999999988888888888999


Q ss_pred             ccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHh
Q psy13786        161 CITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVAM  217 (219)
Q Consensus       161 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~  217 (219)
                      .+|++   +|++..++++....+|..++|.+.+.+    ||++.|.+.++..++..+..++
T Consensus       330 ~~~~~---~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        330 RVPSQ---VRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             hcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence            99999   999999999999999999999998877    8999999988888777766554

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.62  E-value=1.7e-14  Score=115.90  Aligned_cols=139  Identities=13%  Similarity=0.077  Sum_probs=102.7

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhH-hhHHH-------HHHHHHHHhhhhHHHHHHHHHHHhhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMI-TNVPS-------LCGWLLMATKSDLINLYISRLLSGLSV  147 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~G~~~  147 (219)
                      |.++.+.+++.+...++..++.++.|++.||+|||+.... .....       .+........++.........+.+.+.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (399)
T TIGR00893       247 GLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGL  326 (399)
T ss_pred             cccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhch
Confidence            7888899999999999999999999999999999962111 11111       111111111223444444444444444


Q ss_pred             hcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----h-hHHHHHHHHHHHHHHHHHHHhh
Q psy13786        148 GLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----W-YTTVAYIGAFVSFLSLVLVAMI  218 (219)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~-w~~~~~~~~~~~~~~~~~~~~~  218 (219)
                      + ..+....++.|.+|++   +|++..++.+....+|..++|.+.+.+    + |++.+++.++..++..+..+++
T Consensus       327 ~-~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  398 (399)
T TIGR00893       327 G-AGAIGWALISDNAPGN---IAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYLLL  398 (399)
T ss_pred             h-hhhHHHHHHHhhcChh---HHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence            4 7788899999999999   999999999999999999999999887    5 9999998888887777666543

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.61  E-value=7.3e-14  Score=112.12  Aligned_cols=137  Identities=17%  Similarity=0.251  Sum_probs=114.7

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAA  155 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~  155 (219)
                      |.++.+.++..+.......++.++.|++.||+|||+.+.++.+...+........++.+.+.+.+++.|++.+...+...
T Consensus       231 g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  310 (375)
T TIGR00899       231 GLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGM  310 (375)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888999888877777888889999999999999998888776666665556667788788888999998888888888


Q ss_pred             hhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHH
Q psy13786        156 VYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       156 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~  216 (219)
                      .+..|..|++    |++++++++....+|..++|.+.+.+    +|+..+++.++..++..++..
T Consensus       311 ~~~~~~~~~~----~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  371 (375)
T TIGR00899       311 LYFQDLMPGR----AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL  371 (375)
T ss_pred             HHHHHhCcch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence            8899988765    67999999999999999999998877    889999988888777766554

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.61  E-value=3.3e-14  Score=112.60  Aligned_cols=139  Identities=27%  Similarity=0.321  Sum_probs=128.7

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCch-hhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKS-ALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPA  154 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~  154 (219)
                      |.++.+.++..+...++..++.++.+++.||+|||+ .+..+..+..++.+.....++.+...+..++.|++.+...+..
T Consensus       207 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  286 (352)
T cd06174         207 GLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPAL  286 (352)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhH
Confidence            678899999999999999999999999999999999 9999999999999998888888888999999999999999999


Q ss_pred             hhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHh
Q psy13786        155 AVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVAM  217 (219)
Q Consensus       155 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~  217 (219)
                      ..++.|..|++   +|++.+++.+....+|..++|.+.+.+    +|+..+++.+++.++..+..++
T Consensus       287 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~  350 (352)
T cd06174         287 LTLASELAPPE---ARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL  350 (352)
T ss_pred             HHHHHhhcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhee
Confidence            99999999999   999999999999999999999999877    8999999998888887766543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.60  E-value=2.4e-14  Score=116.33  Aligned_cols=137  Identities=15%  Similarity=0.127  Sum_probs=115.1

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAA  155 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~  155 (219)
                      |.++.+.+...+...++..+++++.|++.||+|||+.+..+.+...++.+.....++.+.+.+..++.|++.+...+...
T Consensus       251 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  330 (406)
T PRK11551        251 GLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLY  330 (406)
T ss_pred             CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHH
Confidence            88899999999999999999999999999999999998887777777766666677777777778888888877888889


Q ss_pred             hhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHHHHH
Q psy13786        156 VYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF-----WYTTVAYIGAFVSFLSLVLV  215 (219)
Q Consensus       156 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~~~~  215 (219)
                      ++..|.+|++   +|++..++.+....+|..++|.+.+.+     +|...++......++..++.
T Consensus       331 ~~~~~~~p~~---~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  392 (406)
T PRK11551        331 ALAPLFYPTQ---VRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAA  392 (406)
T ss_pred             HHHHHHcchh---hhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHH
Confidence            9999999999   999999999999999999999999887     45555555555554444443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.60  E-value=5.2e-14  Score=117.17  Aligned_cols=153  Identities=15%  Similarity=0.235  Sum_probs=119.5

Q ss_pred             hhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhh-----CCchh-hhHhhHHHHHHHHHHH
Q psy13786         58 VAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKY-----GRKSA-LMITNVPSLCGWLLMA  128 (219)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----Grr~~-~~~~~~~~~~~~~~~~  128 (219)
                      +..+.........+|.+.   |.+..+.+.. +...... ++++++|+++||+     ||||. +..+.+..+++....+
T Consensus        22 ~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a   99 (491)
T PRK11010         22 FASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMG   99 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHH
Confidence            344444445555666655   8888888886 3333333 6889999999999     99986 5577777777777666


Q ss_pred             hh---hhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh-----hhHHH
Q psy13786        129 TK---SDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF-----WYTTV  200 (219)
Q Consensus       129 ~~---~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~~  200 (219)
                      +.   ++++.+.+.+++.+++.+...+...++..|++|++   +|+++.++...++.+|..+++.+...+     |||..
T Consensus       100 ~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~---~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~  176 (491)
T PRK11010        100 FLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE---ERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGM  176 (491)
T ss_pred             HcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHH
Confidence            64   46778888999999999988999999999999999   999999999999999999998777655     79999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy13786        201 AYIGAFVSFLSLVLV  215 (219)
Q Consensus       201 ~~~~~~~~~~~~~~~  215 (219)
                      |++.++..++..+..
T Consensus       177 f~i~a~l~ll~~l~~  191 (491)
T PRK11010        177 YWLMAALLIPCIIAT  191 (491)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999887766665443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.59  E-value=2.4e-14  Score=116.91  Aligned_cols=137  Identities=18%  Similarity=0.233  Sum_probs=115.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhh----hHHHHHHHHHHHhhhhhcchhhh
Q psy13786         79 IDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKS----DLINLYISRLLSGLSVGLATTPA  154 (219)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~G~~~~~~~~~~  154 (219)
                      ..+.+...+...++.+++.++.|+++||+|||+++.++.++..++..+.....    +.+.+++.+++.|++.+...+..
T Consensus       250 ~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~  329 (418)
T TIGR00889       250 VKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISG  329 (418)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            36678899999999999999999999999999999999998888876666532    24566778999999988888888


Q ss_pred             hhhhhhccCCCCccchhhHHHHHH-HHHHHHHHHHHHHhhhh----------hhHHHHHHHHHHHHHHHHHHHhh
Q psy13786        155 AVYAAECITIHNTDLRGSLSTWST-IALTSGILLSYLTGAFF----------WYTTVAYIGAFVSFLSLVLVAMI  218 (219)
Q Consensus       155 ~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~----------~w~~~~~~~~~~~~~~~~~~~~~  218 (219)
                      ..++.|.+|++   +|+++.++.+ ....+|..++|.+++.+          ||+..|.+.+++.++..++.+++
T Consensus       330 ~~~i~~~~p~~---~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~  401 (418)
T TIGR00889       330 SVFVEKEVPVH---IRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIF  401 (418)
T ss_pred             HHHHHHHCCHH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999   9999999987 67889999999999876          28889988888877777666554

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.59  E-value=2.6e-14  Score=129.92  Aligned_cols=131  Identities=12%  Similarity=0.094  Sum_probs=106.9

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhH---hhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhhh
Q psy13786         80 DQASWFASISAITMPIGCLLSGPIIDKYGRKSALMI---TNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAV  156 (219)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~  156 (219)
                      ...++..+++.+.+.+.++++|+++||+|||+++..   ..+......+.....++++.+++.|+++|++.+...+...+
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a  131 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS  131 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence            457788889999999999999999999999997643   22222222222333588999999999999999999999999


Q ss_pred             hhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHH
Q psy13786        157 YAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLV  213 (219)
Q Consensus       157 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~  213 (219)
                      ++.+++|++   +|++++++.+++..+|..++|.+++.+    +|++.|...++..++..+
T Consensus       132 ~l~~~~~~~---~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~  189 (1140)
T PRK06814        132 ILPDHLNKD---ELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWL  189 (1140)
T ss_pred             hhHhhcCcc---ccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            999999999   999999999999999999999999988    899888554444444433

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.59  E-value=1.6e-13  Score=111.32  Aligned_cols=137  Identities=15%  Similarity=0.110  Sum_probs=102.6

Q ss_pred             cCChhhHHHHHHHHHH-HHHHHHhhHhHhhhhhCCchhhh-HhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhh
Q psy13786         76 YLTIDQASWFASISAI-TMPIGCLLSGPIIDKYGRKSALM-ITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTP  153 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~Grr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~  153 (219)
                      |.++++.|++.+...+ +..++.+..++ +||+||||.++ .+.+...+...+.+++++++.+.+.+.+.|...+...+.
T Consensus        47 ~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  125 (393)
T PRK15011         47 HARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQ  125 (393)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence            8999999999776655 55556655666 99999998754 555666677777788888988766655555444566777


Q ss_pred             hhhhhhhccCCCCccch--hhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHH
Q psy13786        154 AAVYAAECITIHNTDLR--GSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       154 ~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~  216 (219)
                      ...+..|..+++   .|  +...+..+.+..+|..++|++++.+    |||..|+..++..++..+..+
T Consensus       126 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~  191 (393)
T PRK15011        126 MFALAREHADKT---GREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVW  191 (393)
T ss_pred             HHHHHHHHhhhc---cchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence            788888877665   55  3455788888999999999999877    999999988877776655544

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.59  E-value=5.4e-18  Score=139.50  Aligned_cols=132  Identities=32%  Similarity=0.438  Sum_probs=119.8

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhh---hHHHHHHHHHHHhhhhhcchhhhhh
Q psy13786         80 DQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKS---DLINLYISRLLSGLSVGLATTPAAV  156 (219)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~G~~~~~~~~~~~~  156 (219)
                      .+.++..+...++..+|+++.|+++||+|||+.+..+.++..++.++.++++   +++.+.++|++.|++.|+..+..+.
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~  125 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPI  125 (451)
T ss_pred             HHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4578899999999999999999999999999999999999999999999999   9999999999999999999999999


Q ss_pred             hhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----h---hHHHHHHHHHHHHHHHHH
Q psy13786        157 YAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----W---YTTVAYIGAFVSFLSLVL  214 (219)
Q Consensus       157 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~---w~~~~~~~~~~~~~~~~~  214 (219)
                      ++.|..|++   +|++..++.+.+..+|..++..++...    +   ||..+.+..+++++..+.
T Consensus       126 ~~~E~~~~~---~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~  187 (451)
T PF00083_consen  126 YISEIAPPK---HRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLL  187 (451)
T ss_pred             ccccccccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999   999999999999999988887776544    4   999988888777655443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.59  E-value=1.6e-14  Score=118.07  Aligned_cols=138  Identities=12%  Similarity=0.101  Sum_probs=118.7

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAA  155 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~  155 (219)
                      +.+..+.+.+.++..++..++.++.|++.||+|||+.+..+.++..++.++.++.++.+.+++.+++.|++.+...+...
T Consensus       258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  337 (420)
T PRK09528        258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVF  337 (420)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55667789999999999999999999999999999999999998888888888888999888899999998887777778


Q ss_pred             hhhhhccCCCCccchhhHHHH-HHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHH
Q psy13786        156 VYAAECITIHNTDLRGSLSTW-STIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       156 ~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~  216 (219)
                      .++.|.+|++   .|++..+. ++....+|..++|.+.+.+    ||+..|...+++.++..++.+
T Consensus       338 ~~~~~~~~~~---~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~  400 (420)
T PRK09528        338 KYITLNFDVR---LSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISV  400 (420)
T ss_pred             HHHHHHcCcc---ceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Confidence            8999999999   89887765 6778889999999998887    899999988877666555443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.58  E-value=8.2e-14  Score=113.25  Aligned_cols=154  Identities=19%  Similarity=0.219  Sum_probs=124.3

Q ss_pred             Hhhhhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhh-----CCch-hhhHhhHHHHHHHH
Q psy13786         55 LPGVAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKY-----GRKS-ALMITNVPSLCGWL  125 (219)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----Grr~-~~~~~~~~~~~~~~  125 (219)
                      ..++.++...+.....+|.+.   |++.+++|++......  .+.++++|+++||+     |||| .+.++.+..+++..
T Consensus         6 ~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~   83 (402)
T PRK11902          6 LLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIA   83 (402)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHH
Confidence            334556666666677777776   9999999999776665  58899999999999     8876 67777788877777


Q ss_pred             HHHhh---hhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh-----hh
Q psy13786        126 LMATK---SDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF-----WY  197 (219)
Q Consensus       126 ~~~~~---~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w  197 (219)
                      ...+.   .+++.+.+..++.++..+...+...+++.|..|++   +|+++.++...+..+|..+++.++..+     +|
T Consensus        84 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~---~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw  160 (402)
T PRK11902         84 AMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPE---ERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGW  160 (402)
T ss_pred             HHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh---hhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCH
Confidence            76665   35677777777788888888899999999999999   999999999999999999988877665     79


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy13786        198 TTVAYIGAFVSFLSLV  213 (219)
Q Consensus       198 ~~~~~~~~~~~~~~~~  213 (219)
                      |..|++.++..++..+
T Consensus       161 ~~~f~i~a~~~l~~~l  176 (402)
T PRK11902        161 GNTYLLMAGLMLAGAL  176 (402)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999998877665544

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.58  E-value=6.5e-14  Score=127.35  Aligned_cols=114  Identities=11%  Similarity=0.040  Sum_probs=101.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHH---hhhhHHHHHHHHHHHhhhhhcchhhhh
Q psy13786         79 IDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMA---TKSDLINLYISRLLSGLSVGLATTPAA  155 (219)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~G~~~~~~~~~~~  155 (219)
                      ....+++.+++.++..++++++|+++||+|||++++++.++..+..++..   ..++++.+++.|++.|++.+...+...
T Consensus        46 ~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~  125 (1146)
T PRK08633         46 VILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKY  125 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHH
Confidence            44578899999999999999999999999999999988876665554433   357889999999999999999999999


Q ss_pred             hhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        156 VYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       156 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                      +++.|++|++   +|++++++.+.+..+|..+++.+++.+
T Consensus       126 ~~i~~~~~~~---~r~~~~~~~~~~~~ig~~lg~~l~~~l  162 (1146)
T PRK08633        126 GIIPELVGKE---NLSRANGLLEAFTIVAILAGTALFSFL  162 (1146)
T ss_pred             hhhHHhcCcc---cchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999   999999999999999999999998877

>TIGR00901 2A0125 AmpG-related permease

Probab=99.57  E-value=1e-13  Score=110.85  Aligned_cols=143  Identities=18%  Similarity=0.258  Sum_probs=112.9

Q ss_pred             cchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhh-----CCchhh-hHhhHHHHHHHHHHHhh---hhHHHH
Q psy13786         69 VALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKY-----GRKSAL-MITNVPSLCGWLLMATK---SDLINL  136 (219)
Q Consensus        69 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----Grr~~~-~~~~~~~~~~~~~~~~~---~~~~~~  136 (219)
                      +..|.+.   |+|.++.++.... .+...+ ++++|++.||+     ||||.+ +.+.+..++.....++.   .+.+.+
T Consensus         9 ~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l   86 (356)
T TIGR00901         9 NTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLL   86 (356)
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHH
Confidence            3444444   8999999999655 444444 89999999998     899975 56677777776666665   455566


Q ss_pred             HHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----h--------hHHHHHHH
Q psy13786        137 YISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----W--------YTTVAYIG  204 (219)
Q Consensus       137 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~--------w~~~~~~~  204 (219)
                      ....++.+.+.+...+...+++.|.+|++   +|+++.++...+..+|..+++.++..+    +        ||..|++.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~  163 (356)
T TIGR00901        87 AGLAFLIAFFSATQDIALDAWRLEILSDE---ELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWT  163 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHh---hhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHH
Confidence            67777888888888899999999999999   999999999999999999999998766    6        99999988


Q ss_pred             HHHHHHHHHHHH
Q psy13786        205 AFVSFLSLVLVA  216 (219)
Q Consensus       205 ~~~~~~~~~~~~  216 (219)
                      ++..++..+..+
T Consensus       164 ai~~l~~~~~~~  175 (356)
T TIGR00901       164 ALLILPGLLVTL  175 (356)
T ss_pred             HHHHHHHHHHHH
Confidence            887666554433

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.57  E-value=2.3e-13  Score=110.37  Aligned_cols=135  Identities=18%  Similarity=0.220  Sum_probs=115.1

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhhhhhh
Q psy13786         80 DQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAA  159 (219)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~  159 (219)
                      .+.++..+.+.++..++.++.|++.||+|||+.+..+..+..++..+....++.+.+++..++.|++.+...+.......
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~  328 (399)
T PRK05122        249 DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAV  328 (399)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            34566677888889999999999999999999999888888888887777888888888899999999888888788888


Q ss_pred             hccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHh
Q psy13786        160 ECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVAM  217 (219)
Q Consensus       160 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~  217 (219)
                      |..|++   +|+++.++++....+|..+++.+.+.+    ||++.+++.++..++.++..++
T Consensus       329 ~~~~~~---~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (399)
T PRK05122        329 KRVPPQ---NRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWL  387 (399)
T ss_pred             HhCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999   999999999999999998888887777    8999999888777776655543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.56  E-value=2.6e-13  Score=113.09  Aligned_cols=137  Identities=15%  Similarity=0.108  Sum_probs=102.1

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHH---HHhhhhHHHHHHHHHHHhhhhhcchh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLL---MATKSDLINLYISRLLSGLSVGLATT  152 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~G~~~~~~~~  152 (219)
                      |.+..+.++..+...++..++.++.|+++||+|||+++..+.+...+..+.   ...+++...+++++++.|++.+....
T Consensus       282 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g  361 (490)
T PRK10642        282 HYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTG  361 (490)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence            778878888888889999999999999999999999988877644433322   22244567777888888887776667


Q ss_pred             hhhhhhhhccCCCCccchhhHHHH-HHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHHHHHH
Q psy13786        153 PAAVYAAECITIHNTDLRGSLSTW-STIALTSGILLSYLTGAFF-----WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       153 ~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~~~~~  216 (219)
                      ....++.|.+|++   .|++++++ ++.+ .+++.++|.+.+++     +|+.++++..+++++.++..+
T Consensus       362 ~~~~~~~~~~p~~---~Rg~~~g~~~~~~-~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~  427 (490)
T PRK10642        362 VMASTLPAMFPTH---IRYSALAAAFNIS-VLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGV  427 (490)
T ss_pred             HHHHHHHHHCCCc---cchHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence            7788889999999   99999996 5554 45556777777665     467666666666666555444

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.56  E-value=2.1e-13  Score=107.15  Aligned_cols=156  Identities=19%  Similarity=0.083  Sum_probs=135.5

Q ss_pred             hhhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHH---hh
Q psy13786         57 GVAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMA---TK  130 (219)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~---~~  130 (219)
                      .+..++......+..|.+.   +++..+++.++..++.++.+.+++.|++.+|+|+|+-++.+..++++++.++.   ..
T Consensus        22 Ffl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~  101 (422)
T COG0738          22 FFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASS  101 (422)
T ss_pred             HHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            3455555666667788877   99999999999999999999999999999999999999999999999999885   56


Q ss_pred             hhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh---------------
Q psy13786        131 SDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF---------------  195 (219)
Q Consensus       131 ~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---------------  195 (219)
                      .++..++...++.|.|.+...+..+++++...+++   ....-+.+.+..+.+|..++|+++..+               
T Consensus       102 ~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~---~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~  178 (422)
T COG0738         102 KSYGFFLVALFILASGIGLLETAANPYVTLLGKPE---SAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQIL  178 (422)
T ss_pred             hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCch---hHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHH
Confidence            78889999999999999999999999999999998   788889999999999999999998765               


Q ss_pred             --------hhHHHHHHHHHHHHHHHHHH
Q psy13786        196 --------WYTTVAYIGAFVSFLSLVLV  215 (219)
Q Consensus       196 --------~w~~~~~~~~~~~~~~~~~~  215 (219)
                              .|+++|...+...++..+..
T Consensus       179 ~~~~~~~~~v~~pYl~~~~~lvll~v~~  206 (422)
T COG0738         179 AIKGADASSVQFPYLILAGLLVLLAVLI  206 (422)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence                    36677777776666555544

>PRK09952 shikimate transporter; Provisional

Probab=99.55  E-value=1.8e-13  Score=112.42  Aligned_cols=138  Identities=12%  Similarity=0.009  Sum_probs=102.8

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHh---h-hhHHHHHHHHHHHhhhhhcch
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMAT---K-SDLINLYISRLLSGLSVGLAT  151 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~l~G~~~~~~~  151 (219)
                      |.++.....+.....+...++.++.|+++||+|||+.+..+.++..++.+....   . ++...+++..++.+++.+...
T Consensus       282 g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  361 (438)
T PRK09952        282 GLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVV  361 (438)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence            777766655666667777888999999999999999988887666554433322   2 234444455667778877778


Q ss_pred             hhhhhhhhhccCCCCccchhhHHHH-HHHHHHHHHHHHHHHhhhh------hhHHHHHHHHHHHHHHHHHHH
Q psy13786        152 TPAAVYAAECITIHNTDLRGSLSTW-STIALTSGILLSYLTGAFF------WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~------~w~~~~~~~~~~~~~~~~~~~  216 (219)
                      +..++++.|.+|++   .|+++.++ ++.+..+|+.++|.+.+.+      +|+..+.+.++..++..+..+
T Consensus       362 ~~~~~~~~e~~p~~---~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~  430 (438)
T PRK09952        362 CVQQPMFTEMFGAS---YRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTAL  430 (438)
T ss_pred             HHHHHHHHHHCCcc---hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence            88899999999999   99999997 5555668888999888876      477888877777776665543

>KOG2504|consensus

Probab=99.55  E-value=6.8e-14  Score=116.05  Aligned_cols=135  Identities=18%  Similarity=0.248  Sum_probs=122.4

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHH-HHHHhhhhhcchhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYIS-RLLSGLSVGLATTPA  154 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~G~~~~~~~~~~  154 (219)
                      +.+..+++|+.++......+.+|+.+.+.||+|.|++.+.|.++..++.++..++++.+.+++. -++.|+|.+..+...
T Consensus        77 ~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~pa  156 (509)
T KOG2504|consen   77 GSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPA  156 (509)
T ss_pred             CCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcch
Confidence            7788889999999999999999999999999999999999999999999999999999888775 699999999999999


Q ss_pred             hhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHH
Q psy13786        155 AVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVL  214 (219)
Q Consensus       155 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~  214 (219)
                      ...+..+|+++    |+.++|+...+.++|.++-|.+...+    |||+.+++.+.+.+-.++.
T Consensus       157 iviv~~YF~kk----R~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~  216 (509)
T KOG2504|consen  157 VVILGTYFEKK----RALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVA  216 (509)
T ss_pred             hhhhhhHhHHH----HHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence            99999888775    99999999999999999988888877    9999999888777554443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.54  E-value=1.6e-13  Score=111.29  Aligned_cols=136  Identities=15%  Similarity=0.062  Sum_probs=103.3

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHH---hh-----hhHHHHHHHHHHHhhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMA---TK-----SDLINLYISRLLSGLSV  147 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~l~G~~~  147 (219)
                      |.++.+.+++.+...++..+++++.|+++||+|||+.+..+.....+......   ..     +....+.+.+++.|++.
T Consensus        34 g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  113 (396)
T TIGR00882        34 GLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVF  113 (396)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999999999999999999999887666554433221   11     12334556688888888


Q ss_pred             hcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHHHHHHH
Q psy13786        148 GLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF---WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~  216 (219)
                      +...+....+..|..+     +++...+......++|..++|.+++.+   +|++.|+..+++.++..++.+
T Consensus       114 ~~~~~~~~~~~~~~~~-----~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~  180 (396)
T TIGR00882       114 SAGAGAIEAYIEKVSR-----NSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLLM  180 (396)
T ss_pred             ccchhhHHHHHHHhhh-----hcccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHH
Confidence            8777877777766532     344566667777788888898888876   999999988877776655443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.54  E-value=4.6e-13  Score=108.20  Aligned_cols=135  Identities=12%  Similarity=0.157  Sum_probs=119.2

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAA  155 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~  155 (219)
                      |.++.+.+.+.+...++.+++.+..+++.||+|+|+.+.++.+...+.....++.++.+.+++.+.+.|+..+...+...
T Consensus       236 g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~  315 (382)
T TIGR00902       236 GISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAM  315 (382)
T ss_pred             CCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCCCCccchhhHHHHHH-HHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHH
Q psy13786        156 VYAAECITIHNTDLRGSLSTWST-IALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLV  215 (219)
Q Consensus       156 ~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~  215 (219)
                      .++.+. |++   +|+++.++++ ...++|..++|.+++.+    ++ ..|...+.++++.+++.
T Consensus       316 ~~i~~~-~~~---~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~  375 (382)
T TIGR00902       316 RYIAAQ-PGS---EIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLI  375 (382)
T ss_pred             HHHHhC-CHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence            999998 888   8999999876 57789999999999988    54 45666666666655443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.54  E-value=1.3e-13  Score=111.66  Aligned_cols=125  Identities=16%  Similarity=0.072  Sum_probs=102.2

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHH-HHHhhhhHHHHHHHHHHHhhhhhcchhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWL-LMATKSDLINLYISRLLSGLSVGLATTPA  154 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~G~~~~~~~~~~  154 (219)
                      |.++.+.+++.+...++..++.++.|++.||+|||+.+..+.+...+..+ .....++.+.+.+..++.|+..+...+..
T Consensus       270 g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (405)
T TIGR00891       270 GLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGIL  349 (405)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhH
Confidence            88999999999999999999999999999999999998887766533332 23334566666666677777777777888


Q ss_pred             hhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----h-hHHHHHH
Q psy13786        155 AVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----W-YTTVAYI  203 (219)
Q Consensus       155 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~-w~~~~~~  203 (219)
                      +.++.|.+|++   +|++++|+.+....+|..++|++.+.+    | |+..+..
T Consensus       350 ~~~~~~~~~~~---~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       350 PKHLGEYFPTD---QRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHhhhCCcc---hhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence            89999999999   999999999999999999999999988    4 5554443

>PRK03699 putative transporter; Provisional

Probab=99.53  E-value=6.9e-13  Score=107.57  Aligned_cols=135  Identities=13%  Similarity=0.098  Sum_probs=111.1

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAA  155 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~  155 (219)
                      |+++.+.+.+.+.+.++..++.+..|+++||++||+.+.....+..+...+....++...+.+..++.|++.+..++...
T Consensus       237 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~  316 (394)
T PRK03699        237 GMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTII  316 (394)
T ss_pred             CCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999998887777777666666667776666777888888877778877


Q ss_pred             hhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHH
Q psy13786        156 VYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVL  214 (219)
Q Consensus       156 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~  214 (219)
                      .+..|..|.+    +++..+....+..+|..++|.+.+.+    ||+..++..+++.++..+.
T Consensus       317 ~~~~~~~~~~----~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~  375 (394)
T PRK03699        317 TLGSQQTKVA----SPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVM  375 (394)
T ss_pred             HHHHHHccCC----CHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHH
Confidence            7888877644    67778888888899999999999887    8888888777776666443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.53  E-value=1.1e-13  Score=112.34  Aligned_cols=133  Identities=17%  Similarity=0.159  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhhhhhhhc
Q psy13786         82 ASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAEC  161 (219)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~  161 (219)
                      .+.+.+...++..++.+..|++.||+|||+.+..+.....++.+...+.++.+.+.+.+++.|++.+...+....++.+.
T Consensus       260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  339 (408)
T PRK09874        260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN  339 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence            45566677788889999999999999999999998888887777777778888888899999999999889988999999


Q ss_pred             cCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHh
Q psy13786        162 ITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVAM  217 (219)
Q Consensus       162 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~  217 (219)
                      .|++   +||+..++++....+|..++|.+++.+    +|++.|++.+++.++..+..++
T Consensus       340 ~~~~---~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        340 SSNQ---IAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             CCcc---cceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            9999   999999999999999999999999877    8999999988888777665543

>KOG0253|consensus

Probab=99.51  E-value=2.4e-13  Score=105.70  Aligned_cols=167  Identities=16%  Similarity=0.130  Sum_probs=136.2

Q ss_pred             hHHHHHHHHHHHHhhhhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHH
Q psy13786         43 LFRLIYLGLIVILPGVAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVP  119 (219)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~  119 (219)
                      .+.++...+...+......+.....+.+.|...   |.+..+..++....+.+..+++..+|.++|++|||+.+.+....
T Consensus        73 grfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~  152 (528)
T KOG0253|consen   73 GRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLV  152 (528)
T ss_pred             ccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHH
Confidence            344555555555555554444444444445444   88888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----
Q psy13786        120 SLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----  195 (219)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----  195 (219)
                      ..+..++.+.++|+..+.+.|.+.|+|.|+ .|...++-.|..|..   +|..-+-+. ..+.+|......++...    
T Consensus       153 t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~---~r~~~~V~~-~~waig~v~ea~law~vm~~~  227 (528)
T KOG0253|consen  153 TGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSS---HRWLLTVMS-FFWAIGQVFEALLAWGVMSNF  227 (528)
T ss_pred             HHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCc---CCCcchhHH-HHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999998 788889999999999   999888877 88899999888887766    


Q ss_pred             hhHHHHHHHHHHHHHHHHH
Q psy13786        196 WYTTVAYIGAFVSFLSLVL  214 (219)
Q Consensus       196 ~w~~~~~~~~~~~~~~~~~  214 (219)
                      ||||.......+..+.+.+
T Consensus       228 gwr~~l~~~~~pl~~~a~f  246 (528)
T KOG0253|consen  228 GWRYLLFTSSTPLMFAARF  246 (528)
T ss_pred             hHHHHHHHHHhHHHHHHHH
Confidence            9999887777555444443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.51  E-value=9e-13  Score=109.23  Aligned_cols=138  Identities=14%  Similarity=0.013  Sum_probs=103.1

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHH--HHhhhhHHHHHHHHHHHhhhhhcchhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLL--MATKSDLINLYISRLLSGLSVGLATTP  153 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~G~~~~~~~~~  153 (219)
                      |++..+.++..+...++..++.+..|+++||+|||+.+........++...  ....++.....+.+++.|+........
T Consensus       290 g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~  369 (467)
T PRK09556        290 GFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLL  369 (467)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHH
Confidence            899999999999999999999999999999999998876654444333222  223456666667788888654443333


Q ss_pred             hhhhhhhccCCCCccchhhHHHHHHHHHHH-HHHHHHHHhhhh-h---------------hHHHHHHHHHHHHHHHHHHH
Q psy13786        154 AAVYAAECITIHNTDLRGSLSTWSTIALTS-GILLSYLTGAFF-W---------------YTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       154 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~-~---------------w~~~~~~~~~~~~~~~~~~~  216 (219)
                      ......|.+|++   .||++.|+.+....+ |..++|.+.+.+ +               |+..|++..+..+++++..+
T Consensus       370 ~~~~~~~~~p~~---~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        370 IGVAAVGFVPKK---AIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             HHHHHHhhcchh---hHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence            446777999999   999999999888886 667777776655 4               89999888777776655543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.51  E-value=1.4e-13  Score=110.70  Aligned_cols=131  Identities=21%  Similarity=0.172  Sum_probs=102.8

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHH-H-HHHh--hhhHHHHHHHHHHHhhhhhcch
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGW-L-LMAT--KSDLINLYISRLLSGLSVGLAT  151 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~-~~~~--~~~~~~~~~~~~l~G~~~~~~~  151 (219)
                      |.++.+.+...+...++..++.++.|+++||+|||+.+.....+..+.. . ....  .++.+.+....++.|++.+...
T Consensus       251 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  330 (394)
T TIGR00883       251 GLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYT  330 (394)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHh
Confidence            7888899999999999999999999999999999998775554443322 1 2222  2456666677888898888888


Q ss_pred             hhhhhhhhhccCCCCccchhhHHHH-HHHHHHHHHHHHHHHhhhh----h-hHHHHHHHHHHHH
Q psy13786        152 TPAAVYAAECITIHNTDLRGSLSTW-STIALTSGILLSYLTGAFF----W-YTTVAYIGAFVSF  209 (219)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~----~-w~~~~~~~~~~~~  209 (219)
                      +...+++.|.+|++   +|+++.++ ++....+|..++|.+++.+    + |+..++...+..+
T Consensus       331 ~~~~~~~~~~~p~~---~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l  391 (394)
T TIGR00883       331 GPMGSFLPELFPTE---VRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL  391 (394)
T ss_pred             hhHHHHHHHhCCcc---ceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence            99999999999999   99999996 5677778888999998877    4 7777666655443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.51  E-value=4.6e-13  Score=108.15  Aligned_cols=144  Identities=12%  Similarity=-0.049  Sum_probs=110.6

Q ss_pred             hhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhh-HHHHHHH-HHHHhhhhH
Q psy13786         59 APGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITN-VPSLCGW-LLMATKSDL  133 (219)
Q Consensus        59 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~-~~~~~~~-~~~~~~~~~  133 (219)
                      ..........|++|.+.   |.+..+.+++.+.+.+...++++++|+++||+|||+...... +...+.. .....++++
T Consensus        15 ~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   94 (382)
T TIGR00902        15 GYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAGAHNA   94 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            33334455566677666   999999999999999999999999999999999854332211 1111122 233457889


Q ss_pred             HHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHH
Q psy13786        134 INLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFV  207 (219)
Q Consensus       134 ~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~  207 (219)
                      +.+++.|.+.|.+.+...+...++..+.  ++   +|++..+......++|..++|++++.+    |||..|++..+.
T Consensus        95 ~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~---~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~  167 (382)
T TIGR00902        95 WLLFIAIGLFALFFSAGMPIGDALANTW--QK---QFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG  167 (382)
T ss_pred             HHHHHHHHHHHHHHccchhHHHHHHHHH--HH---HcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence            9999999999998888888888887654  45   789999999999999999999988877    899988876554

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.50  E-value=5e-13  Score=107.97  Aligned_cols=141  Identities=9%  Similarity=-0.034  Sum_probs=106.9

Q ss_pred             ccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCc----hhhhHhhHHHHHHHHHHHhhhhHHHH
Q psy13786         64 FGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRK----SALMITNVPSLCGWLLMATKSDLINL  136 (219)
Q Consensus        64 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr----~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (219)
                      .+...|.+|.+.   |.|..+.|+..+.+.++..+++++.|++.||+|||    +.+.+....  .........++++.+
T Consensus        20 ~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l   97 (382)
T PRK11128         20 YGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLL--FAVAFWFGAHSFWLL   97 (382)
T ss_pred             HHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHH--HHHHHHHhcccHHHH
Confidence            344455555555   89999999999999999999999999999999994    333222211  122223346889999


Q ss_pred             HHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHH
Q psy13786        137 YISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLS  211 (219)
Q Consensus       137 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~  211 (219)
                      ++.|++.|++.+...+...++..++  ++   +|++..+.......+|..++|.+++.+    +||..|+..++..++.
T Consensus        98 ~i~~~l~g~~~~~~~~~~~a~~~~~--~~---~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~  171 (382)
T PRK11128         98 FVAIGLFNLFFSPLVPLTDALANTW--QK---QIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASM  171 (382)
T ss_pred             HHHHHHHHHHHcccccHHHHHHHHH--Hh---hccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence            9999999999888888877777765  34   577888888888889999999999877    9999988777554443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.50  E-value=2.5e-12  Score=104.08  Aligned_cols=137  Identities=15%  Similarity=0.121  Sum_probs=111.1

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHH-HHHHhhhhHHHHHHHHHHHhhhhhcchhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGW-LLMATKSDLINLYISRLLSGLSVGLATTPA  154 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~  154 (219)
                      |.++.+.+++.+...++..+++++.|+++||+|||+... +..+..++. .+....++.+.+.+..++.|++.+...+..
T Consensus       237 g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~  315 (390)
T PRK03545        237 GLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAM  315 (390)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHH
Confidence            788899999999999999999999999999999887544 444333333 333456677777888889999887777777


Q ss_pred             hhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHh
Q psy13786        155 AVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVAM  217 (219)
Q Consensus       155 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~  217 (219)
                      ...+.|..| +   +|++++++++....+|..+||.+++.+    +++..++..+.+.+++++..++
T Consensus       316 ~~~~~~~~~-~---~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~  378 (390)
T PRK03545        316 QVKVLKLAP-D---ATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSIL  378 (390)
T ss_pred             HHHHHHhCC-C---cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHH
Confidence            888888766 5   689999999999999999999999887    8999999998888887776654

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.50  E-value=1.7e-12  Score=104.88  Aligned_cols=135  Identities=18%  Similarity=0.154  Sum_probs=109.7

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAA  155 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~  155 (219)
                      |.++.+.++..+...++..++++..|++.||+|||+++..+.....++.....  . ........++.|++.....|...
T Consensus       231 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~~~~p~~~  307 (381)
T PRK03633        231 GMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGFTLYPVAM  307 (381)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHHhHHHHHH
Confidence            88888999999999999999999999999999999999888777776655443  2 22334456777877777788888


Q ss_pred             hhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHH
Q psy13786        156 VYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       156 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~  216 (219)
                      .++.|..|++   +++...+..+....+|..++|.+++.+    +|++.|.+.+.+.++..+..+
T Consensus       308 ~~~~~~~~~~---~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~  369 (381)
T PRK03633        308 AWACEKVEHH---ELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLL  369 (381)
T ss_pred             HHHHccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence            8899999988   788888888889999999999999988    788888888777766655443

>TIGR00897 2A0118 polyol permease family

Probab=99.50  E-value=1.4e-12  Score=106.07  Aligned_cols=138  Identities=14%  Similarity=0.026  Sum_probs=106.1

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhh-HhhHHHHHHHHHHHh-----hhhHHHHHHHHHHHhhhhhc
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALM-ITNVPSLCGWLLMAT-----KSDLINLYISRLLSGLSVGL  149 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~G~~~~~  149 (219)
                      |.++.+.+++.+...++..++.+..|+++||+|||+.+. .+.+...+..+....     .++.+...+..++.|++.+.
T Consensus       253 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~  332 (402)
T TIGR00897       253 GFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAG  332 (402)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Confidence            888889999999999999999999999999999988764 333333333333222     24566666778888888776


Q ss_pred             chhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhh
Q psy13786        150 ATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVAMI  218 (219)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~~  218 (219)
                      ..+ ....+.|. +++   +|+++.|+.+....+|..++|.+.+.+    ||+..+++.+++.++..++.+|.
T Consensus       333 ~~~-~~~~~~~~-~~~---~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       333 YVP-LAAVFPTL-APK---HKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             HHH-HHHHHHhh-Ccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence            544 34556665 556   799999999999999999999999877    88899999888888877766653

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.49  E-value=1.5e-12  Score=107.04  Aligned_cols=138  Identities=13%  Similarity=0.163  Sum_probs=107.0

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhh----hhCCchhhhHh-hHHHHHHHHHHHhhhhHH----------------
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIID----KYGRKSALMIT-NVPSLCGWLLMATKSDLI----------------  134 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~Grr~~~~~~-~~~~~~~~~~~~~~~~~~----------------  134 (219)
                      |.++...+++..+..+...+.+++.|+++|    |+||||+++.+ .+...++..+.+++++..                
T Consensus        35 g~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i  114 (477)
T TIGR01301        35 GIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAI  114 (477)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHH
Confidence            999999999999999999999999999999    59999998875 566666666666655532                


Q ss_pred             -HHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccch--hhHHHHHHHHHHHHHHHHHHHhhhh----------------
Q psy13786        135 -NLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLR--GSLSTWSTIALTSGILLSYLTGAFF----------------  195 (219)
Q Consensus       135 -~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~~~~~~----------------  195 (219)
                       ..+++..+..++.....+...+++.|.+|++   +|  +.+.++.+...++|+.+++.+++..                
T Consensus       115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~---~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~  191 (477)
T TIGR01301       115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGD---ARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGV  191 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccccc
Confidence             2233334445577777788899999999988   66  5788899999999999999887653                


Q ss_pred             ---hhHHHHHHHHHHHHHHHHHHH
Q psy13786        196 ---WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       196 ---~w~~~~~~~~~~~~~~~~~~~  216 (219)
                         +.|..|++.++..++..+...
T Consensus       192 ~~~~~~~~F~i~a~~l~i~~l~t~  215 (477)
T TIGR01301       192 SCANLKSCFLIDIILLAILTYIAL  215 (477)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHe
Confidence               456778887776666655544

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00895 2A0115 benzoate transport

Probab=99.48  E-value=3.5e-13  Score=108.66  Aligned_cols=116  Identities=13%  Similarity=0.137  Sum_probs=96.8

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAA  155 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~  155 (219)
                      |.++.+.+...+...++..++.++.|++.||+|||+......+.......+....++.+...+..++.|++.+...+...
T Consensus       281 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  360 (398)
T TIGR00895       281 GFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLY  360 (398)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888999999999999999999999999999999554444333333333333356677777888999999998999999


Q ss_pred             hhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhh
Q psy13786        156 VYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAF  194 (219)
Q Consensus       156 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  194 (219)
                      +++.|.+|++   +|+++.++.+....+|..++|.+.+.
T Consensus       361 ~~~~~~~~~~---~~g~~~g~~~~~~~~g~~~g~~~~G~  396 (398)
T TIGR00895       361 ALMALFYPTA---IRATGVGWAIGIGRLGAIIGPILAGY  396 (398)
T ss_pred             HHHhhcCCHH---HHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence            9999999999   99999999999999999999998875

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.48  E-value=2.6e-12  Score=104.89  Aligned_cols=137  Identities=12%  Similarity=0.039  Sum_probs=116.0

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAA  155 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~  155 (219)
                      |.++.+.+++.+...++..++.++.+++.||.++++.+..+.++..++.++..+.++.+...+..++.|++.+...+...
T Consensus       255 g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  334 (417)
T PRK10489        255 QMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQY  334 (417)
T ss_pred             CCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88889999999999999999999999999998888888888888888887777788887777888889998887777778


Q ss_pred             hhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHH
Q psy13786        156 VYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLV  215 (219)
Q Consensus       156 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~  215 (219)
                      +++.|..|++   .||+++++++....+|..++|.+.+.+    |++..++..++..++..++.
T Consensus       335 ~~~~~~~p~~---~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~  395 (417)
T PRK10489        335 TLLQTQTPDE---MLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLL  395 (417)
T ss_pred             HHHHhhCCHH---HHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence            8999999999   999999999999999999999999888    66667766665555544433

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.48  E-value=1.7e-12  Score=106.97  Aligned_cols=139  Identities=13%  Similarity=0.038  Sum_probs=107.7

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHh-----hh------hHHHHHHHHHHHh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMAT-----KS------DLINLYISRLLSG  144 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~-----~~------~~~~~~~~~~l~G  144 (219)
                      |.+..+.++......++..++.++.|+++||+|||+.+.++.++..++.++..+     .+      +...+....++.+
T Consensus       315 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (481)
T TIGR00879       315 GVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIA  394 (481)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHH
Confidence            888888888999999999999999999999999999999888877777666652     11      2222333333333


Q ss_pred             hhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHh
Q psy13786        145 LSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVAM  217 (219)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~  217 (219)
                      .......+....++.|.+|++   +|++++++.+....+|..++|.+.+.+    +|++.|++.++++++..+..++
T Consensus       395 ~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~  468 (481)
T TIGR00879       395 FFAMGWGPVPWVIVSEIFPLS---LRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYF  468 (481)
T ss_pred             HHHccccCeehhhhhccCChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHhe
Confidence            333334466677889999999   999999999999999999999888876    7888888888777777665543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.47  E-value=1.8e-12  Score=105.99  Aligned_cols=136  Identities=15%  Similarity=0.080  Sum_probs=92.9

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHH---hhh-----hHHHHHHHHHHHhhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMA---TKS-----DLINLYISRLLSGLSV  147 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~l~G~~~  147 (219)
                      |+++.+.|.+.+...++..+++++.|+++||+|||+++.++..+..+......   ..+     ......+.+++.|.+.
T Consensus        42 g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (420)
T PRK09528         42 GLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGF  121 (420)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            89999999999999999999999999999999999999876655544432211   111     1111222333344333


Q ss_pred             hcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHHHHHHH
Q psy13786        148 GLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF---WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~  216 (219)
                      ....+....+..+ . .+   +|++..+..+....+|..++|.+++.+   +|++.|+..++.+++..++.+
T Consensus       122 ~~~~~~~~~~~~~-~-~~---~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~  188 (420)
T PRK09528        122 LAGAGAIEAYIER-V-SR---RSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVLLF  188 (420)
T ss_pred             ccchhhhhhHHHH-H-Hh---hccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHh
Confidence            3333333333322 2 23   467788888888899999999998877   899999888877766655543

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.46  E-value=2e-12  Score=104.92  Aligned_cols=139  Identities=10%  Similarity=0.121  Sum_probs=115.9

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAA  155 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~  155 (219)
                      +.+....+...+...+...++.+..|++.||+|||+.+.++.++.++...+....++.+.+++.+++.|++.........
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  329 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF  329 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556778888888899999999999999999999999999888888887777788888888889999988776666666


Q ss_pred             hhhhhccCCCCccchhhHHHH-HHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHh
Q psy13786        156 VYAAECITIHNTDLRGSLSTW-STIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVAM  217 (219)
Q Consensus       156 ~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~  217 (219)
                      .+..+..+++   .+++..+. ++....+|..+++.+++.+    ||+..|.+.+++.++..+...+
T Consensus       330 ~~~~~~~~~~---~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       330 KYITSQFDVR---LSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             HHHHHhCCcc---eEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            7788888888   88887776 6788899999999888888    8899999988887777665443

>KOG2325|consensus

Probab=99.45  E-value=9.2e-12  Score=101.30  Aligned_cols=172  Identities=23%  Similarity=0.287  Sum_probs=128.8

Q ss_pred             CCCchHHHHHHHHHHHHhhhhhhccccccc----cchhhcc-cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCC-chh
Q psy13786         39 DTPTLFRLIYLGLIVILPGVAPGMSFGFPA----VALPQMS-YLTIDQASWFASISAITMPIGCLLSGPIIDKYGR-KSA  112 (219)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Gr-r~~  112 (219)
                      +++..||..++..+.++...   ...+++.    +++..+. +-+.+..|++.++..++..++++++|+.+.|.+. |++
T Consensus        28 ~~~t~wrsi~l~~~~sfl~~---v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~P  104 (488)
T KOG2325|consen   28 ERKTNWRSIYLALLNSFLVA---VQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKP  104 (488)
T ss_pred             ccCCchHhHHHHHHHHHHHh---hhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccC
Confidence            34556666666665554443   3333333    2222222 6667788999999999999999999999999886 888


Q ss_pred             hhHhhHHHHHHHHHH-Hh---hh-hHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHH
Q psy13786        113 LMITNVPSLCGWLLM-AT---KS-DLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILL  187 (219)
Q Consensus       113 ~~~~~~~~~~~~~~~-~~---~~-~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  187 (219)
                      ++.+.++..+++++. +.   .+ ..+.++++|++.|+|.| .....-.|+++....+   +|.++++..+.+..+|..+
T Consensus       105 li~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~---dR~rA~a~~~~~~vlg~il  180 (488)
T KOG2325|consen  105 LIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVE---DRPRAFAATSGGFVLGIIL  180 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCcc---chHHHHHHhhhHHHHHHHH
Confidence            899999999999887 33   23 56788899999999976 4577889999988888   8999999999888899999


Q ss_pred             HHHHhhhh-----------------hhHHHHHHHHHHHHHHHHHHHh
Q psy13786        188 SYLTGAFF-----------------WYTTVAYIGAFVSFLSLVLVAM  217 (219)
Q Consensus       188 ~~~~~~~~-----------------~w~~~~~~~~~~~~~~~~~~~~  217 (219)
                      ||.+...+                 .+..+-|+.++..++.++..++
T Consensus       181 Gp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~  227 (488)
T KOG2325|consen  181 GPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILF  227 (488)
T ss_pred             hHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHh
Confidence            98887766                 2334566667776666665544

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.45  E-value=4.4e-12  Score=104.16  Aligned_cols=139  Identities=18%  Similarity=0.080  Sum_probs=96.8

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhh--CCchhh-hHhhHHHHHHHHHHH--hhhhHHHHHHHHHHHhhhhhcc
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKY--GRKSAL-MITNVPSLCGWLLMA--TKSDLINLYISRLLSGLSVGLA  150 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--Grr~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~G~~~~~~  150 (219)
                      |++..+.+...+.+.++..++.++.|+++||+  ++|+.. ....+...+......  ...+.....+..+..|++....
T Consensus       275 g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  354 (434)
T PRK11663        275 GVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGP  354 (434)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhH
Confidence            88999999999999999999999999999998  333332 221111111111111  1223333334444455443323


Q ss_pred             hhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHh
Q psy13786        151 TTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVAM  217 (219)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~  217 (219)
                      ......++.|.+|++   +|++++|+.+....+|..++|.+.+.+    ||+..|+..+++.++..+..++
T Consensus       355 ~~~~~~~~~~~~~~~---~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~  422 (434)
T PRK11663        355 QMLIGMAAAECSHKE---AAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLP  422 (434)
T ss_pred             HHHHHHHHHhcccHh---hHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            334456778999999   999999999999999999999888887    8999999888887777665543

>TIGR00898 2A0119 cation transport protein

Probab=99.45  E-value=2.3e-12  Score=107.74  Aligned_cols=130  Identities=15%  Similarity=0.074  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhH--HHHHHHHHHHhhhhhcchhhhhhhhhhcc
Q psy13786         85 FASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDL--INLYISRLLSGLSVGLATTPAAVYAAECI  162 (219)
Q Consensus        85 ~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~G~~~~~~~~~~~~~~~~~~  162 (219)
                      ......+..+++.++.+++.||+|||+.+.++.++.+++.++..+.++.  +...+..++.+++.+..++..+.+..|.+
T Consensus       360 ~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  439 (505)
T TIGR00898       360 DLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELY  439 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            3344566777888999999999999999999998888888777765443  44445556667777777788899999999


Q ss_pred             CCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHHHh
Q psy13786        163 TIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF--WYTTVAYIGAFVSFLSLVLVAM  217 (219)
Q Consensus       163 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~--~w~~~~~~~~~~~~~~~~~~~~  217 (219)
                      |++   .|++++|+.+....+|+.++|.+.+..  ++..++.+.++..++..++.++
T Consensus       440 p~~---~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  493 (505)
T TIGR00898       440 PTV---VRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILTLF  493 (505)
T ss_pred             cHH---HHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc
Confidence            999   999999999999999999999998833  5666777777666666555443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.45  E-value=1.2e-12  Score=105.65  Aligned_cols=140  Identities=16%  Similarity=0.173  Sum_probs=122.2

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhh-hCCchhhhHhhHHHHHHHHHHHhh--hhHHHHHHHHHHHhhhhhcchh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDK-YGRKSALMITNVPSLCGWLLMATK--SDLINLYISRLLSGLSVGLATT  152 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~G~~~~~~~~  152 (219)
                      |++++++.-+.+.+.--.-+...++||++|| +|+|+.+..+.++++++.+..+..  .+...++++..+.++|.|..-+
T Consensus        57 g~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~  136 (498)
T COG3104          57 GFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKP  136 (498)
T ss_pred             CcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccc
Confidence            4888888888888877777888999999999 599999999999999999999987  4788899999999999999999


Q ss_pred             hhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHH
Q psy13786        153 PAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       153 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~  216 (219)
                      ....+++|.+|++|.+ |-.+.++.+++.++|++++|++.+++    +|...|...++-..+.++..+
T Consensus       137 NiS~llg~ly~~~Dpr-rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~  203 (498)
T COG3104         137 NISSLLGELYPKDDPR-RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFL  203 (498)
T ss_pred             cHHHHHHHhcCCCCcc-cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998653 77788899999999999999999988    888888888777666665544

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.45  E-value=3.1e-12  Score=106.66  Aligned_cols=129  Identities=12%  Similarity=0.019  Sum_probs=100.3

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhh--hhHHHHHHHHHHHhhhhhcchhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATK--SDLINLYISRLLSGLSVGLATTP  153 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~G~~~~~~~~~  153 (219)
                      |.++.+.+++.+...++..++.++.|+++||+|||+++..+.++..+..+.....  .+.+.+.+..++.+....+..+.
T Consensus       307 g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (496)
T PRK03893        307 GYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGL  386 (496)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchh
Confidence            8999999999999999999999999999999999999888776666555443332  33344444445444433344567


Q ss_pred             hhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHH
Q psy13786        154 AAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFV  207 (219)
Q Consensus       154 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~  207 (219)
                      .+.++.|.+|++   +|++.+++.+....+|..++|.+++.+    +|+..+...+..
T Consensus       387 ~~~~~~~~~~~~---~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~  441 (496)
T PRK03893        387 LPKLIGGYFDTE---QRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFS  441 (496)
T ss_pred             hHHHHHhhCCHH---HhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence            778999999999   999999999999999999999999887    777776554433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.43  E-value=3.5e-12  Score=105.41  Aligned_cols=136  Identities=15%  Similarity=0.067  Sum_probs=111.9

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhh--CCchhhhH--hhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcch
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKY--GRKSALMI--TNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLAT  151 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--Grr~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~  151 (219)
                      |.++.+.+++.+...++..+++++.|+++||.  ++|+...+  +.+..+++.++....++++.+++.+++.|++.+...
T Consensus       272 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~  351 (455)
T TIGR00892       272 GVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVG  351 (455)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHH
Confidence            88999999999999999999999999999974  33433333  333334445555667888888889999999999888


Q ss_pred             hhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHHHH
Q psy13786        152 TPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF-----WYTTVAYIGAFVSFLSLVL  214 (219)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~~~  214 (219)
                      +....++.|.+|++   +|++.+++++....+|+.++|.+++.+     +|++.|++.++..++..+.
T Consensus       352 ~~~~~~~~~~~~~~---~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~  416 (455)
T TIGR00892       352 ALLFEVLMDLVGAQ---RFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF  416 (455)
T ss_pred             HHHHHHHHHHhhHH---HHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence            99999999999999   999999999999999999999999877     5889998888776665543

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.43  E-value=1.8e-11  Score=99.34  Aligned_cols=135  Identities=16%  Similarity=0.098  Sum_probs=105.5

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhh-hHHHHHHHHHHHhhhhhcchhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKS-DLINLYISRLLSGLSVGLATTPA  154 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~~~~~~~~~~  154 (219)
                      |.+..+.+...+.+.++..++.++.|++.||+|||+.+..+..+..++..+....+ +...+  ..++.|++.+...+..
T Consensus       236 g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~~  313 (393)
T PRK09705        236 GASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPLC  313 (393)
T ss_pred             CCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchHHHH
Confidence            88999999999999999999999999999999999999888777777665544322 22222  2345678777777877


Q ss_pred             hhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHHHHH
Q psy13786        155 AVYAAECIT-IHNTDLRGSLSTWSTIALTSGILLSYLTGAFF-----WYTTVAYIGAFVSFLSLVLV  215 (219)
Q Consensus       155 ~~~~~~~~~-~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~~~~  215 (219)
                      .....+..+ ++   +|++..++.+....++..++|.+.+++     +|...|++.++.+++..+..
T Consensus       314 ~~~~~~~~~~~~---~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  377 (393)
T PRK09705        314 LLLALDHSVQPA---IAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIIT  377 (393)
T ss_pred             HHHHHhhcCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence            777777775 56   799999999999999999999999888     47777777766666555443

>KOG0569|consensus

Probab=99.42  E-value=1.5e-11  Score=100.62  Aligned_cols=171  Identities=17%  Similarity=0.078  Sum_probs=118.7

Q ss_pred             chHHHHHHHHHHHHhhhhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhH
Q psy13786         42 TLFRLIYLGLIVILPGVAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNV  118 (219)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~  118 (219)
                      ..++...+.+.+.++..+.+.+..  ..+...+.   |++..++.+++....+...+..+++.++.||+|||+.++.+..
T Consensus       266 ~lR~~~~i~~~v~~~qq~sGi~ai--~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~  343 (485)
T KOG0569|consen  266 TLRRPLLIGIVVSFAQQFSGINAI--FFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLS  343 (485)
T ss_pred             chhHHHHHHHHHHHHHHhcCccee--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence            344444455555555444443322  22222222   9999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHhh---hh-H--H---HHHHHHHHHhhhhh-cchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHH
Q psy13786        119 PSLCGWLLMATK---SD-L--I---NLYISRLLSGLSVG-LATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLS  188 (219)
Q Consensus       119 ~~~~~~~~~~~~---~~-~--~---~~~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  188 (219)
                      +..+..+++...   .+ .  |   ..+++.++..++.+ +..|..+-+.+|.+|++   .|..+.++......+..++.
T Consensus       344 ~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~---~R~aa~s~~~~~~w~~~fiv  420 (485)
T KOG0569|consen  344 LMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQS---ARSAAQSVATAVNWLSNFIV  420 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCcc---chHHHHHHHHHHHHHHHHHH
Confidence            888887776642   11 1  1   12233333333222 34688889999999999   99999998888888877776


Q ss_pred             HHHhhhh----hhHHHHHHHHHHHHHHHHHHHhh
Q psy13786        189 YLTGAFF----WYTTVAYIGAFVSFLSLVLVAMI  218 (219)
Q Consensus       189 ~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~~  218 (219)
                      ......+    |- +.|+...+++++..+..++.
T Consensus       421 ~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~  453 (485)
T KOG0569|consen  421 GFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRY  453 (485)
T ss_pred             HHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHh
Confidence            6555555    32 67777788888877777654

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.42  E-value=1.5e-11  Score=99.33  Aligned_cols=134  Identities=15%  Similarity=0.218  Sum_probs=111.0

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAA  155 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~  155 (219)
                      |.++.+.+.+.+...++..+..++.|++.||+|+|+.+..+.+..+++.+.....++.+.+++..++.|++.+...+...
T Consensus       236 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  315 (382)
T PRK11128        236 GYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAM  315 (382)
T ss_pred             CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88988999999988899999999999999999999999999999888888888889999888999999999988888888


Q ss_pred             hhhhhccCCCCccchhhHHHHHH-HHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHH
Q psy13786        156 VYAAECITIHNTDLRGSLSTWST-IALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVL  214 (219)
Q Consensus       156 ~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~  214 (219)
                      .+..+. +++   ++++..+..+ ....+|..++|.+++.+    ++ ..++..+++.++.++.
T Consensus       316 ~~~~~~-~~~---~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T PRK11128        316 RYIAAR-PGS---EVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALFI  374 (382)
T ss_pred             HHHHHC-CHh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            888886 555   6788888765 66677888899998888    55 4556666665555443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.42  E-value=7.1e-12  Score=103.46  Aligned_cols=138  Identities=14%  Similarity=0.061  Sum_probs=95.2

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhh--CCchhhh-HhhHHHHHHHHHHHh--hhhHHHHHHHHHHHhhhhhcc
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKY--GRKSALM-ITNVPSLCGWLLMAT--KSDLINLYISRLLSGLSVGLA  150 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--Grr~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~G~~~~~~  150 (219)
                      |++..+.++......++..++.++.|+++||+  +||+... ....+..++.+....  ..+.....+..++.|.+....
T Consensus       285 g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  364 (452)
T PRK11273        285 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGP  364 (452)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhH
Confidence            78888899998999999999999999999999  5554332 222222333222222  234444444555555544333


Q ss_pred             hhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHH-HHHHhhhh----hhHHHHHHHHHHHHHHHHHHH
Q psy13786        151 TTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILL-SYLTGAFF----WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~  216 (219)
                      ......+..|.+|++   .||++.|+.+....+|+.+ +|.+.+.+    ||+..|++.++.++++++...
T Consensus       365 ~~~~~~~~~~~~p~~---~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~  432 (452)
T PRK11273        365 VMLIGLHALELAPKK---AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  432 (452)
T ss_pred             HHHHHHHHHHHcChh---hhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            333445678999999   9999999998888887654 68777766    899999888887777766554

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.42  E-value=1.5e-11  Score=101.62  Aligned_cols=139  Identities=17%  Similarity=0.129  Sum_probs=123.1

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCc--hhhhHhhHHHHHHHHHHHh--------hhhHHHHHHHHHHHhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRK--SALMITNVPSLCGWLLMAT--------KSDLINLYISRLLSGL  145 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr--~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~G~  145 (219)
                      |++..+...+..+..+..++|++++|++.||+|.|  +++..+.+.+.+..+.-.+        .++.+.+++.-++.|+
T Consensus       313 g~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~  392 (477)
T PF11700_consen  313 GMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGL  392 (477)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999  8888888777665555444        5778889999999999


Q ss_pred             hhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHHHHHHh
Q psy13786        146 SVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF-----WYTTVAYIGAFVSFLSLVLVAM  217 (219)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~~~~~~  217 (219)
                      +.|..++..-++.+|+.|++   +.+...|++.......+.+||.+.+.+     +-|+.+....++.++.+++.++
T Consensus       393 ~~G~~qs~sRs~~~~LiP~g---~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~  466 (477)
T PF11700_consen  393 FMGGIQSASRSLFSRLIPPG---REAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF  466 (477)
T ss_pred             HhhhHHHHHHHHHHHhCCCc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999   999999999999999999999999888     5788888877777777766543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.42  E-value=6.2e-12  Score=103.29  Aligned_cols=117  Identities=12%  Similarity=0.112  Sum_probs=85.6

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHH-HH---hhhhHHHHHHHHHHHhhhhhcch
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLL-MA---TKSDLINLYISRLLSGLSVGLAT  151 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~l~G~~~~~~~  151 (219)
                      |++..+.++......++..++.++.|+++||+|||+++..+..+..+..+. ..   ..++........++.+++.+...
T Consensus       270 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  349 (434)
T PRK15075        270 HLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYN  349 (434)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH
Confidence            888888888888899999999999999999999999988765444332211 11   12334344444555666666666


Q ss_pred             hhhhhhhhhccCCCCccchhhHHHHH-HHHHHHHHHHHHHHhhhh
Q psy13786        152 TPAAVYAAECITIHNTDLRGSLSTWS-TIALTSGILLSYLTGAFF  195 (219)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~~  195 (219)
                      +....++.|.+|++   .|+++.++. +.+..+++.++|.+.+.+
T Consensus       350 ~~~~~~~~e~~p~~---~rg~~~g~~~~~~~~~~g~~~p~~~g~i  391 (434)
T PRK15075        350 GAMVVALTEVMPAE---VRTAGFSLAYSLATAIFGGFTPAISTWL  391 (434)
T ss_pred             hhHHHHHHHHCCCC---ccchheeHHHHHHHHHHhhhHHHHHHHH
Confidence            66778899999999   999999975 445555567788887766

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.42  E-value=2.7e-12  Score=102.35  Aligned_cols=117  Identities=11%  Similarity=0.083  Sum_probs=105.7

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhh-HHHHHHHHHHHhhhhhcchhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSD-LINLYISRLLSGLSVGLATTPA  154 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~G~~~~~~~~~~  154 (219)
                      |.++.+.+...+...++..++.++.+++.||+|||+.+..+..+.+++.....+.++ .+.+.+..++.|++.+...+..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  322 (365)
T TIGR00900       243 GRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQ  322 (365)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            888999999999999999999999999999999999998887777777777777664 7778888999999999889999


Q ss_pred             hhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        155 AVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       155 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                      ..++.|..|++   +|++..++.+....+|..++|.+.+.+
T Consensus       323 ~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~g~~~~g~l  360 (365)
T TIGR00900       323 GTLLQRRVPAE---LLGRVFGAQFSLSHAAWPLGLILAGPL  360 (365)
T ss_pred             HHHHHHhCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999   999999999999999999999988765

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.41  E-value=9.5e-12  Score=104.03  Aligned_cols=125  Identities=14%  Similarity=0.087  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhh----hHHHHHHHHHHHhhhhhcchhhhhhhhhhcc
Q psy13786         87 SISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKS----DLINLYISRLLSGLSVGLATTPAAVYAAECI  162 (219)
Q Consensus        87 ~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~  162 (219)
                      ....++.+++.++.+++.||+|||+.++++..+.+++..+.+...    +...+...-+...++..+..+..+.+..|.+
T Consensus       342 ~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~  421 (502)
T TIGR00887       342 IIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVF  421 (502)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccC
Confidence            334556677888999999999999999888877777665555422    1111111112222222234566778889999


Q ss_pred             CCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh-h-------------hHHHHHHHHHHHHHHHHH
Q psy13786        163 TIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF-W-------------YTTVAYIGAFVSFLSLVL  214 (219)
Q Consensus       163 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-~-------------w~~~~~~~~~~~~~~~~~  214 (219)
                      |++   .|+++.++.+....+|++++|.+.+.+ +             +...+++.++.+++..+.
T Consensus       422 p~~---~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~  484 (502)
T TIGR00887       422 PTR---YRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF  484 (502)
T ss_pred             chh---HHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Confidence            999   999999999999999999999887766 2             234666666666665544

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.40  E-value=1.8e-11  Score=100.52  Aligned_cols=138  Identities=12%  Similarity=0.018  Sum_probs=89.0

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHH--h--hhhHHHHHHHHHHHhhhhhcch
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMA--T--KSDLINLYISRLLSGLSVGLAT  151 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~l~G~~~~~~~  151 (219)
                      |.+..+.+...+...+...+++++.|+++||+|||+.+.++.++..+......  .  .++.......-.+.++..+...
T Consensus       275 g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (432)
T PRK10406        275 GMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYT  354 (432)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence            78888888888888888889999999999999999988776554433332221  1  1222222222222223333334


Q ss_pred             hhhhhhhhhccCCCCccchhhHHHHHHHHHH-HHHHHHHHHhhhh---h-hHHHHHHHHHHHHHHHHHHH
Q psy13786        152 TPAAVYAAECITIHNTDLRGSLSTWSTIALT-SGILLSYLTGAFF---W-YTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~~~~---~-w~~~~~~~~~~~~~~~~~~~  216 (219)
                      +..+.++.|.+|++   .|+++.|+.+...+ +.+...|.+...+   + |...+++.++..++..+..+
T Consensus       355 ~~~~~~~~e~fp~~---~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~  421 (432)
T PRK10406        355 SISGILKAEMFPAQ---VRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSL  421 (432)
T ss_pred             HHHHHHHHHHCCCC---ccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence            55678899999999   99999997665444 3344466666655   3 55566665555555555443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.39  E-value=4.1e-12  Score=101.72  Aligned_cols=122  Identities=16%  Similarity=0.129  Sum_probs=89.0

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCc-hhhhH-hh-HHHHHHHHHHHh--hhhHHHHHHHHHHHhhhhhcc
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRK-SALMI-TN-VPSLCGWLLMAT--KSDLINLYISRLLSGLSVGLA  150 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr-~~~~~-~~-~~~~~~~~~~~~--~~~~~~~~~~~~l~G~~~~~~  150 (219)
                      |.++.+.+...+...++..++.++.|++.||+++| +.... .. ....++......  ..+.....+..++.|+.....
T Consensus       248 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  327 (379)
T TIGR00881       248 GFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGP  327 (379)
T ss_pred             CCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhh
Confidence            88899999999999999999999999999986433 32221 11 111222222222  234445556667777766666


Q ss_pred             hhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHH
Q psy13786        151 TTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTV  200 (219)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~  200 (219)
                      .+....+..|.+|++   +|+++.++.+....+|..++|.+.+.+    ||++.
T Consensus       328 ~~~~~~~~~~~~~~~---~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~  378 (379)
T TIGR00881       328 QMLIGVIASELAPKK---AAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA  378 (379)
T ss_pred             hHHHHHHHHHhcCcc---hhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence            666678899999999   999999999999999999999988877    66654

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.39  E-value=1e-11  Score=98.39  Aligned_cols=164  Identities=16%  Similarity=0.119  Sum_probs=123.2

Q ss_pred             HHHHHHhhhhhhccccccccchhhcc----cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhh--CCchhhhHhh-HHHHH
Q psy13786         50 GLIVILPGVAPGMSFGFPAVALPQMS----YLTIDQASWFASISAITMPIGCLLSGPIIDKY--GRKSALMITN-VPSLC  122 (219)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--Grr~~~~~~~-~~~~~  122 (219)
                      +..+.++.++.....+.+..+.|.+.    |+|..++++..+.+=++.+.|.+++||++||+  |||.+..+.+ +...+
T Consensus       254 iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~  333 (448)
T COG2271         254 IWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITA  333 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence            33444445555555555555556555    99999999999999999999999999999985  7777665443 33334


Q ss_pred             HHHHHHhhh--hHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHH-HHHHHHHHhhhh----
Q psy13786        123 GWLLMATKS--DLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTS-GILLSYLTGAFF----  195 (219)
Q Consensus       123 ~~~~~~~~~--~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~----  195 (219)
                      +....-.++  |+....++.++.|+..-+..-.......|..|++   .-|++.|+.+.+..+ |...+....+++    
T Consensus       334 ~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~---AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~  410 (448)
T COG2271         334 SLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKK---AAGTATGFVGLFAYLIGAALAGLPLGYIADTW  410 (448)
T ss_pred             HHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHh---hccchhchhhhHHHHhhHHhcCCcceeeEecC
Confidence            444444444  5588888899999988888877888899999999   999999999888777 777776666666    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHH
Q psy13786        196 WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       196 ~w~~~~~~~~~~~~~~~~~~~  216 (219)
                      ||...|++..+.++++.++..
T Consensus       411 gW~g~Fi~~~~~a~l~~lll~  431 (448)
T COG2271         411 GWDGGFIVLSIAALLAILLLL  431 (448)
T ss_pred             CCcchHHHHHHHHHHHHHHHH
Confidence            899988887777777665543

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.37  E-value=5.5e-11  Score=94.72  Aligned_cols=144  Identities=19%  Similarity=0.202  Sum_probs=114.4

Q ss_pred             ccchhhcccCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHh-hhhHHHHHHHHHHHhhh
Q psy13786         68 AVALPQMSYLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMAT-KSDLINLYISRLLSGLS  146 (219)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~G~~  146 (219)
                      .|++.+..|++.+..+++...+.++..+|..+.|++.|| +.|+.+.....+..+..+...+ .++.+...+.-++.|+.
T Consensus       235 ~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a  313 (394)
T COG2814         235 RPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFA  313 (394)
T ss_pred             HHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            344433339999999999999999999999999999999 9999988887777777776665 45555666666777777


Q ss_pred             hhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHH
Q psy13786        147 VGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~  216 (219)
                      ............++.. ++   .+..+.+++....++|..+|..+++.+    |+....+..++..++..++.+
T Consensus       314 ~~~~~~~~~~~~a~~~-p~---~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~  383 (394)
T COG2814         314 FSPALQGLQTRLARLA-PD---AADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLAL  383 (394)
T ss_pred             hhhhhhHHHHHhcccC-CC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Confidence            7666556566666633 45   699999999999999999999999988    888888888888877776654

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.37  E-value=3.5e-11  Score=99.90  Aligned_cols=139  Identities=16%  Similarity=0.070  Sum_probs=101.7

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhh--hhH-H-HHHHHHHHHhhhhhc-c
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATK--SDL-I-NLYISRLLSGLSVGL-A  150 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~--~~~-~-~~~~~~~l~G~~~~~-~  150 (219)
                      |.+.....+......+...++.++.++++||+|||++++.+.++.+++.++....  .+. . ....+.++.+.+.+. .
T Consensus       302 g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (479)
T PRK10077        302 GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSW  381 (479)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccc
Confidence            7777667777777888899999999999999999999999999888887776542  111 1 222233444444433 3


Q ss_pred             hhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhh------h----hhHHHHHHHHHHHHHHHHHHHh
Q psy13786        151 TTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAF------F----WYTTVAYIGAFVSFLSLVLVAM  217 (219)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~------~----~w~~~~~~~~~~~~~~~~~~~~  217 (219)
                      .+..+.++.|.+|++   +|+++.++.+....+|..+++.+...      .    +|++.|++.++.+++.+++.++
T Consensus       382 ~~~~~~~~~e~~p~~---~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (479)
T PRK10077        382 GPVCWVLLSEIFPNA---IRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWK  455 (479)
T ss_pred             cchhHHHhHhhCChh---HHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHh
Confidence            367789999999999   99999999999888888877544432      1    6777888877776666655543

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.35  E-value=3.1e-11  Score=97.77  Aligned_cols=136  Identities=12%  Similarity=0.103  Sum_probs=102.2

Q ss_pred             cCChhhHHHHHHHHH-HHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHh------hhhHHHHHHHHHHHhhhhh
Q psy13786         76 YLTIDQASWFASISA-ITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMAT------KSDLINLYISRLLSGLSVG  148 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~G~~~~  148 (219)
                      |+++++.+++..... ....++.++.|++.||+|+|+.+..+.++..+.......      .++...+.....+.+++.+
T Consensus       239 G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  318 (390)
T TIGR02718       239 GWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITG  318 (390)
T ss_pred             CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHH
Confidence            999999999888776 467778899999999999999988877655333222211      1233333444555566667


Q ss_pred             cchhhhhhhhhhccCC-CCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHH
Q psy13786        149 LATTPAAVYAAECITI-HNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVL  214 (219)
Q Consensus       149 ~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~  214 (219)
                      ...+.......+..++ +   ++++..+..+....+|..++|.+++.+    ||+..|+..+++.++..+.
T Consensus       319 ~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       319 ITSVAIYTAFMRFAGDGD---QAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHHHHHHHHHHhCccc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence            7777777787777766 7   899999999999999999999999987    7888888877776665544

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.35  E-value=2.7e-11  Score=101.14  Aligned_cols=134  Identities=14%  Similarity=0.168  Sum_probs=115.0

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHh-----hhhHHHHHHHHHHHhhhhhcc
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMAT-----KSDLINLYISRLLSGLSVGLA  150 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~G~~~~~~  150 (219)
                      .-|+...+++.+...+...+.++++|.++||+.|||+++.+-++.++.....++     ..+.+.+++.-++.|++.+..
T Consensus        41 t~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~  120 (524)
T PF05977_consen   41 TGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFF  120 (524)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHH
Confidence            567888999999999999999999999999999999999988777655544433     247788889999999999999


Q ss_pred             hhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHH
Q psy13786        151 TTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSL  212 (219)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~  212 (219)
                      .|..++.+.|..|++   +...++++.+...++...+||.+++.+    |-.+.|.+.++..++..
T Consensus       121 ~PA~~A~ip~lV~~~---~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i  183 (524)
T PF05977_consen  121 NPAWQAIIPELVPKE---DLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISI  183 (524)
T ss_pred             HHHHHHHHHHhccHh---hHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999   999999999999999999999999987    66677777665544443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.35  E-value=4.8e-11  Score=108.82  Aligned_cols=131  Identities=21%  Similarity=0.234  Sum_probs=111.7

Q ss_pred             cCChh-hHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhh
Q psy13786         76 YLTID-QASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPA  154 (219)
Q Consensus        76 ~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~  154 (219)
                      |.+.. +.+++.+...++.++++++.|++.||+++|+.+.++.++.+++.++..+..+.+.+++..++.|++.+...+..
T Consensus       264 g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  343 (1146)
T PRK08633        264 GLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPL  343 (1146)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH
Confidence            88888 89999999999999999999999999999999998888888888888888888888888999999999888888


Q ss_pred             hhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHH
Q psy13786        155 AVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF-----WYTTVAYIGAFVSF  209 (219)
Q Consensus       155 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~~~~~~~~~~~  209 (219)
                      .+++.+..|++   .||+++++.++...+|..+++.++..+     ++...+++.+.+.+
T Consensus       344 ~~~~~~~~p~~---~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  400 (1146)
T PRK08633        344 NALIQFRAPEK---ELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTL  400 (1146)
T ss_pred             HHHHhhcCCcc---chhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            99999999999   999999999999999988877777655     34444554444433

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.34  E-value=7.5e-11  Score=98.48  Aligned_cols=137  Identities=15%  Similarity=0.156  Sum_probs=120.4

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAA  155 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~  155 (219)
                      |.++...|++.+...+|.++|++..+++.+|+++++.+..+.+..+++.+..++.++.+...+..++.|++.....+...
T Consensus       250 ~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~  329 (524)
T PF05977_consen  250 GGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLN  329 (524)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88899999999999999999999999999999999999999999999999999999999989999999999998888889


Q ss_pred             hhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHH
Q psy13786        156 VYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLV  215 (219)
Q Consensus       156 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~  215 (219)
                      +.+.+..|++   .||+.++++++....+..+|..+.+.+    |.+..+.+.++..++..++.
T Consensus       330 t~~Q~~~P~~---~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~  390 (524)
T PF05977_consen  330 TLVQLSVPDW---VRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA  390 (524)
T ss_pred             HHHHHhCCHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999   999999999988888888888888777    66777776665554444433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.34  E-value=1e-10  Score=91.13  Aligned_cols=165  Identities=13%  Similarity=0.166  Sum_probs=137.8

Q ss_pred             HHHHHHHHHhhhhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHH
Q psy13786         47 IYLGLIVILPGVAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCG  123 (219)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~  123 (219)
                      ++....+.+..+-.-...+...|.++++.   |.|.+..|.+.+...+...+.++...++.+|+|.++.+..+.++..++
T Consensus        11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G   90 (395)
T COG2807          11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAG   90 (395)
T ss_pred             hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence            33333333333444444556678888777   999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh-----hhH
Q psy13786        124 WLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF-----WYT  198 (219)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~  198 (219)
                      .++-... +...++.+-.+.|.+.+..+...+..+-+.+|++    -+..++.|.+..++|+.+++.+...+     +||
T Consensus        91 ~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~----~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~  165 (395)
T COG2807          91 ILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR----VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWR  165 (395)
T ss_pred             HHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc----hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHH
Confidence            9988776 7788889999999999999999999999999987    88999999988888777776665555     799


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy13786        199 TVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~  216 (219)
                      ....+.+.++++.++..+
T Consensus       166 ~aL~~WAl~allAl~~Wl  183 (395)
T COG2807         166 GALGFWALLALLALLIWL  183 (395)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999988888876543

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.34  E-value=8.2e-11  Score=98.14  Aligned_cols=139  Identities=12%  Similarity=0.131  Sum_probs=105.7

Q ss_pred             cCChhhHHHHHH-HHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHH---Hhh-hhHHHHHHHHHHHhhhhhcc
Q psy13786         76 YLTIDQASWFAS-ISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLM---ATK-SDLINLYISRLLSGLSVGLA  150 (219)
Q Consensus        76 ~~~~~~~~~~~~-~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~l~G~~~~~~  150 (219)
                      |+++.+.++... ...++.+++.++.|+++||+|||+.+.++.++.++..+..   ... ++...+.+..++..++.|..
T Consensus       254 G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~  333 (491)
T PRK11010        254 GFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMG  333 (491)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence            999999999874 5568999999999999999999998777665545443322   222 34444444555655555555


Q ss_pred             hhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHh
Q psy13786        151 TTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVAM  217 (219)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~  217 (219)
                      .+...++..+..+++   .+++..++.+....+|..+++.+.+.+    ||+..|.+.++++++..+..++
T Consensus       334 ~~~~~a~~~~l~~~~---~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~  401 (491)
T PRK11010        334 TAAFVALLMTLCNKS---FSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLV  401 (491)
T ss_pred             HHHHHHHHHHHcCCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            566788899999999   999999999999999988777777776    8999998888888777665543

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.34  E-value=1.4e-11  Score=101.08  Aligned_cols=138  Identities=24%  Similarity=0.270  Sum_probs=105.9

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhh----hCCchh-hhHhhHHHHHHHHHHHhhhh------HHHHHHHHHHHh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDK----YGRKSA-LMITNVPSLCGWLLMATKSD------LINLYISRLLSG  144 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~Grr~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~G  144 (219)
                      |+++.+.|.+.++..+...+..|+.|+++||    +||||. ++.+.+..+++.+++...++      ...+.+.+++.+
T Consensus        31 g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (437)
T TIGR00792        31 GLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLG  110 (437)
T ss_pred             CCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHH
Confidence            9999999999999999999999999999997    688664 55677777777777665543      345566778888


Q ss_pred             hhhhcchhhhhhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHHHHhhhh-----------hhHHHHHHHHHHHHHHH
Q psy13786        145 LSVGLATTPAAVYAAECIT-IHNTDLRGSLSTWSTIALTSGILLSYLTGAFF-----------WYTTVAYIGAFVSFLSL  212 (219)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----------~w~~~~~~~~~~~~~~~  212 (219)
                      ++.+...+...++..|..+ ++   +|++..++.+....+|..+++.+...+           +|++.+.+.+++.++..
T Consensus       111 ~~~~~~~~~~~al~~~~~~~~~---~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~  187 (437)
T TIGR00792       111 LFYSFVNIPYWSLVPAITLDPR---ERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSL  187 (437)
T ss_pred             HHHHhhcccHhhCcccccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHH
Confidence            8888777777888888874 56   899999988888777766554433211           79998888887776665


Q ss_pred             HHHH
Q psy13786        213 VLVA  216 (219)
Q Consensus       213 ~~~~  216 (219)
                      +..+
T Consensus       188 ~~~~  191 (437)
T TIGR00792       188 IICF  191 (437)
T ss_pred             HHHH
Confidence            5443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.33  E-value=9.1e-11  Score=95.98  Aligned_cols=117  Identities=13%  Similarity=0.079  Sum_probs=89.2

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhh--hhhcchhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGL--SVGLATTP  153 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~--~~~~~~~~  153 (219)
                      |.++.+.+...+...++..++.++.|++.||+|||+.+..+.++..+..+.....++.....+...+.|.  +..+..+.
T Consensus       262 g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (426)
T PRK12307        262 GFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGL  341 (426)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHH
Confidence            8888889999999999999999999999999999999988877766655544432221112222223333  22333456


Q ss_pred             hhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        154 AAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       154 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                      .+.++.|.+|++   +|++++|+.+....+|+.++|.+.+.+
T Consensus       342 ~~~~~~~~~p~~---~~g~~~g~~~~~~~~~~~~gp~~~g~l  380 (426)
T PRK12307        342 VPKFLYDYFPLE---VRGLGTGLIYNLAATSGTFNSMAATWL  380 (426)
T ss_pred             HHHHHHHhCcHH---HHhhhhhHHHHHHhHHHHHHHHHHHHH
Confidence            678889999999   999999999999999999999998887

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.32  E-value=7.6e-11  Score=96.73  Aligned_cols=118  Identities=19%  Similarity=0.243  Sum_probs=96.7

Q ss_pred             ChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhh-hhHHHHHHHHHHHhhhhhcchhhhhh
Q psy13786         78 TIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATK-SDLINLYISRLLSGLSVGLATTPAAV  156 (219)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~G~~~~~~~~~~~~  156 (219)
                      ++.+.+++.+...++.+++.++.++++||+|+|+.+.++.++.+++.+...+. ++.+.+.+..++.|++.+...+..++
T Consensus       255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  334 (437)
T TIGR00792       255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA  334 (437)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667778888899999999999999999999999999988888777766654 45566677788899999888888899


Q ss_pred             hhhhccCCCC----ccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        157 YAAECITIHN----TDLRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       157 ~~~~~~~~~~----~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                      +++|..+.+|    .+++|...++.+....+|..+++.+.+.+
T Consensus       335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l  377 (437)
T TIGR00792       335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI  377 (437)
T ss_pred             HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998875221    01679999999999999999999888876

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.32  E-value=9.5e-11  Score=92.10  Aligned_cols=123  Identities=13%  Similarity=0.012  Sum_probs=97.5

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAA  155 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~  155 (219)
                      |.++.+.+...+.+..+..+|.++.+++.||+|+||++.++..+..++.++....++.... ..-++.|++.+..+|...
T Consensus       174 g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~  252 (310)
T TIGR01272       174 GLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPTIF  252 (310)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999999999888887777777665555544333 355688999999999999


Q ss_pred             hhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHH
Q psy13786        156 VYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIG  204 (219)
Q Consensus       156 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~  204 (219)
                      +...+..|++    .+++.++. ....+|+.+.|.+.+.+    +.+..+++.
T Consensus       253 s~a~~~~~~~----~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~  300 (310)
T TIGR01272       253 SLALNALGRH----TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALP  300 (310)
T ss_pred             HHHHhhhhhh----hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHH
Confidence            9888888765    45566665 45668899999877776    666666643

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.31  E-value=3.1e-11  Score=99.33  Aligned_cols=139  Identities=13%  Similarity=0.053  Sum_probs=93.2

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHH---HHHHHHHh--hhhHHHHHHHHHHHhhhhhcc
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSL---CGWLLMAT--KSDLINLYISRLLSGLSVGLA  150 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~l~G~~~~~~  150 (219)
                      |.++.+.++......++..++.+..|+++||+++++....+.....   ++......  ..+.+......++.|++....
T Consensus       283 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  362 (438)
T TIGR00712       283 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGP  362 (438)
T ss_pred             CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccH
Confidence            7889999999999999999999999999999975443233322221   11111112  123343334445555543332


Q ss_pred             hhhhhhhhhhccCCCCccchhhHHHHHHHHHHHH-HHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHh
Q psy13786        151 TTPAAVYAAECITIHNTDLRGSLSTWSTIALTSG-ILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVAM  217 (219)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g-~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~  217 (219)
                      .........|.+|++   +|+++.|+.+....+| ..++|.+.+.+    ||...+++..+..++..+..++
T Consensus       363 ~~~~~~~~~~~~~~~---~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  431 (438)
T TIGR00712       363 VMLIGLHALELAPKK---AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  431 (438)
T ss_pred             HHHHHHHHHHhcChh---heeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            223335678999999   9999999998877776 46788888776    7888888877776666665544

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10504 putative transporter; Provisional

Probab=99.31  E-value=1e-10  Score=97.00  Aligned_cols=117  Identities=9%  Similarity=0.027  Sum_probs=99.6

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhh---hhHHHHHHHHHHHhhhhhcchh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATK---SDLINLYISRLLSGLSVGLATT  152 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~G~~~~~~~~  152 (219)
                      |.++.+.++......++..++.++.|++.||+|||+++..+..+..+...+..+.   ++.+.+.+..++.|++.+...+
T Consensus       293 g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  372 (471)
T PRK10504        293 GFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFS  372 (471)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHH
Confidence            8889999999988889899999999999999999999998888787776665553   3334444566778888888888


Q ss_pred             hhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        153 PAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       153 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                      ....+..+..|++   .|+.+.++.++...+|..+++.+.+.+
T Consensus       373 ~~~~~~~~~~~~~---~~g~~~~~~~~~~~~g~~ig~~i~g~l  412 (471)
T PRK10504        373 SMNTLTLKDLPDN---LASSGNSLLSMIMQLSMSIGVTIAGLL  412 (471)
T ss_pred             HHHHHHHHcCCHH---hccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            8889999999999   999999999999999999999998876

>KOG0253|consensus

Probab=99.30  E-value=1.9e-11  Score=95.40  Aligned_cols=125  Identities=15%  Similarity=0.108  Sum_probs=92.9

Q ss_pred             HHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCcc
Q psy13786         89 SAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTD  168 (219)
Q Consensus        89 ~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~  168 (219)
                      ..+.-..|.++.+++.||+|||+.+..+.++.+++.++...+.+-....+..+..-++..+.+.+.+.|..|++|.+   
T Consensus       390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTa---  466 (528)
T KOG0253|consen  390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTA---  466 (528)
T ss_pred             HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchh---
Confidence            34556678899999999999999999999999999888877654433333333344444556677899999999999   


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHHH
Q psy13786        169 LRGSLSTWSTIALTSGILLSYLTGAFF--WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       169 ~r~~~~~~~~~~~~~g~~~~~~~~~~~--~w~~~~~~~~~~~~~~~~~~~  216 (219)
                      .|+++.|.-.....+|+++.|+++-..  +-..+..+.+.+++++.+...
T Consensus       467 vRatgvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavc  516 (528)
T KOG0253|consen  467 VRATGVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVC  516 (528)
T ss_pred             hhhcchhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHhe
Confidence            999999999999999999999999444  333333444445555544443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.30  E-value=1.5e-10  Score=93.48  Aligned_cols=134  Identities=17%  Similarity=0.212  Sum_probs=97.5

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHh-hhhHHHHHHHHHHHhhhhhcchhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMAT-KSDLINLYISRLLSGLSVGLATTPA  154 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~G~~~~~~~~~~  154 (219)
                      |.++.+.++..+...++..++.++.|++.||+|+|+.+..+..+.+++.++... .++.+...+..++.+.+.....+..
T Consensus       231 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  310 (382)
T PRK10091        231 GFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPL  310 (382)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHH
Confidence            889999999999999999999999999999999999999888887777655543 4555555566666666655444433


Q ss_pred             hh-hhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHHHH
Q psy13786        155 AV-YAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF-----WYTTVAYIGAFVSFLSLVL  214 (219)
Q Consensus       155 ~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~~~  214 (219)
                      .. ...+..+++   .++.+  ..+....+|..++|.+++.+     +|++.+...+..+++....
T Consensus       311 ~~~~~~~~~~~~---~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~  371 (382)
T PRK10091        311 QILLLQNAKGGE---LLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSS  371 (382)
T ss_pred             HHHHHHhCCcch---HHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHH
Confidence            43 334444444   45544  34667889999999998876     6888888776665555443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.27  E-value=5.4e-11  Score=98.83  Aligned_cols=117  Identities=15%  Similarity=0.118  Sum_probs=102.1

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHh----hhhHHHHHHHHHHHhhhhhcch
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMAT----KSDLINLYISRLLSGLSVGLAT  151 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~G~~~~~~~  151 (219)
                      |.++.+.++......++..++.++.|++.||+|||+.+.++..+..++..+..+    ..+.+.+....++.|++.+...
T Consensus       287 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~  366 (485)
T TIGR00711       287 GYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFF  366 (485)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999999999998888888777662    2355666777889999998887


Q ss_pred             hhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        152 TPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                      +.......+..|++   +|+++.++.+....+|+.+++.+.+.+
T Consensus       367 ~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~g~~ig~~i~g~~  407 (485)
T TIGR00711       367 MPLTTIALSGLPPH---KIARGSSLSNFTRQLGGSIGTALITTI  407 (485)
T ss_pred             HHHHHHHHhcCCHH---HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777888889999   999999999999999999998887766

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.27  E-value=5.7e-11  Score=97.00  Aligned_cols=130  Identities=12%  Similarity=0.080  Sum_probs=89.7

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhh-hHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSAL-MITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPA  154 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~  154 (219)
                      +.++.+.+...+...++..++.+..|+++||++||+.. ....+...++..+....++....+..-.+.+++.....+..
T Consensus       275 ~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  354 (412)
T TIGR02332       275 GSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIF  354 (412)
T ss_pred             CCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHH
Confidence            45677889999999999999999999999999987753 33443444433222222222222222223333333333444


Q ss_pred             hhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHH
Q psy13786        155 AVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF-----WYTTVAYIGAFVS  208 (219)
Q Consensus       155 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~~~~~~~~~~  208 (219)
                      .....|.+|++   +|++++|+.+....+|+.++|.+.+.+     +|++.+++.++..
T Consensus       355 ~~~~~~~~~~~---~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~  410 (412)
T TIGR02332       355 WTTPDQSISLQ---ARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL  410 (412)
T ss_pred             HhhcccccchH---HHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence            55667889999   999999999999999999999888776     5888887766543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.26  E-value=1.2e-10  Score=95.20  Aligned_cols=128  Identities=16%  Similarity=0.104  Sum_probs=91.5

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCC-chhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGR-KSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPA  154 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~  154 (219)
                      |++..+.|++.+...++..+++++.|+++||+|| |+++.++.++..+...+..+.++++.+.+.|++.|++.+...+..
T Consensus        34 g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  113 (418)
T TIGR00889        34 HFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIALT  113 (418)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHH
Confidence            8999999999999999999999999999999965 778888888887888888888899999999999999776665554


Q ss_pred             hhhhh--------hccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHH
Q psy13786        155 AVYAA--------ECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLV  213 (219)
Q Consensus       155 ~~~~~--------~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~  213 (219)
                      .+...        |.....   .|.+..|      .+|..++|.+++.+    .|+ +|++.++..++..+
T Consensus       114 ~~l~~~~~~~~g~~~~~~~---~~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~  174 (418)
T TIGR00889       114 NSISYANLPQAGLDVVTDF---PPIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGV  174 (418)
T ss_pred             HHHHHHHHhhcCCCchhcC---CCeeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHH
Confidence            44322        222222   3444444      24666666666655    343 35555555444443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.25  E-value=2.3e-10  Score=92.15  Aligned_cols=113  Identities=20%  Similarity=0.281  Sum_probs=89.9

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhh-----hhHHHHHHHHHHHhhhhhcc
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATK-----SDLINLYISRLLSGLSVGLA  150 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~G~~~~~~  150 (219)
                      |.++.+.+.+.+...++..+++++.|++.||+|||+.+..+..+..++..+....     ++...+....++.|++.+..
T Consensus       238 g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  317 (385)
T TIGR00710       238 GVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMI  317 (385)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999999999999999999999888877777766555442     23444555677888988888


Q ss_pred             hhhhhhhhhhccCCCCccchhhHHHHHHHHHH-HHHHHHHHHh
Q psy13786        151 TTPAAVYAAECITIHNTDLRGSLSTWSTIALT-SGILLSYLTG  192 (219)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~  192 (219)
                      .+....+..|..| +   +|+++.++.+.... .|...++.++
T Consensus       318 ~~~~~~~~~~~~~-~---~~g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       318 SSIAMAYALEDFP-H---VAGTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             HHHHHHHHhccCc-c---cchHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888876 5   69999998776654 4666666655

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.25  E-value=1.2e-10  Score=96.91  Aligned_cols=138  Identities=15%  Similarity=0.012  Sum_probs=98.7

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCch-------hhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKS-------ALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVG  148 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~  148 (219)
                      |+++.+.+.+.+...++..++.++.|+++||+|||+       ...+..++.++..++....++.+...+..++.+++.+
T Consensus       284 g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~  363 (476)
T PLN00028        284 GLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQ  363 (476)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999998762       2222333333333444445555555555566666655


Q ss_pred             cchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHHHHHHHh
Q psy13786        149 LATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF---WYTTVAYIGAFVSFLSLVLVAM  217 (219)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~  217 (219)
                      ...+...+++.+..| +   +||+..++.+.+..+|+.++|.+...-   +|+..|++.+++.+++.++.++
T Consensus       364 ~~~~~~~~~~~~~~~-~---~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~~  431 (476)
T PLN00028        364 AACGATFGIVPFVSR-R---SLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVAF  431 (476)
T ss_pred             HhhhhhcccCcccCh-h---hchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHh
Confidence            555556666666654 5   799999999888888888888775532   6999999888777777665543

>PRK10054 putative transporter; Provisional

Probab=99.25  E-value=1.4e-10  Score=94.18  Aligned_cols=129  Identities=8%  Similarity=-0.056  Sum_probs=102.2

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhh-hhHHHHHHHHHHHhhhhhcchhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATK-SDLINLYISRLLSGLSVGLATTPA  154 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~G~~~~~~~~~~  154 (219)
                      +.+....+...+...+.....++..|++.||+++|+.+..+.++..++.....+. ++.+.+.+..++.|++.+...|..
T Consensus       240 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~  319 (395)
T PRK10054        240 DFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGE  319 (395)
T ss_pred             chHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhH
Confidence            5566667777777777777778889999999999999999888888877766654 566667778889999988878888


Q ss_pred             hhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHH
Q psy13786        155 AVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVS  208 (219)
Q Consensus       155 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~  208 (219)
                      ..++.+..|++   .|+++.+..+ ...+|..++|.+++.+    +....|++.+...
T Consensus       320 ~~~~~~~~p~~---~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~  373 (395)
T PRK10054        320 YMLIDHIAPPG---MKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAI  373 (395)
T ss_pred             HHHHHHhCCcc---cceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHH
Confidence            88999999999   9999988655 4558999999999888    5555555544433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.25  E-value=2.3e-10  Score=93.12  Aligned_cols=116  Identities=14%  Similarity=0.040  Sum_probs=94.9

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhh-----hhHHHHHHHHHHHhhhhhcc
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATK-----SDLINLYISRLLSGLSVGLA  150 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~G~~~~~~  150 (219)
                      |.++.+.++......++..++.++.|+++||+|+|+.+.++.+...++..+....     ++.+.+.+..++.|++.+..
T Consensus       247 g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~  326 (406)
T PRK15402        247 QLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLA  326 (406)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHH
Confidence            8888889988888888999999999999999999999988888777776665543     34556677788899988877


Q ss_pred             hhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        151 TTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                      .+......... +++   +||+..+.++....+|..+++.+.+.+
T Consensus       327 ~~~~~~~~~~~-~~~---~~g~~~~~~~~~~~~~~~~g~~~~~~l  367 (406)
T PRK15402        327 NAGLYRLTLFS-SDV---SKGTVSAAMGMLSMLIFTVGIELSKHA  367 (406)
T ss_pred             hhhHHHHHhhh-ccc---cccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            76666555443 447   899999999999999999999998887

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.24  E-value=5.9e-10  Score=90.54  Aligned_cols=132  Identities=14%  Similarity=0.097  Sum_probs=101.9

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHH-HHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVP-SLCGWLLMATKSDLINLYISRLLSGLSVGLATTPA  154 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~  154 (219)
                      |+++.+.+.......++..++.++.+++.||.+ |+.+..+..+ .....++....++.+.+.+..++.|++.+...+..
T Consensus       248 g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~  326 (394)
T PRK10213        248 GFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGW  326 (394)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHH
Confidence            889999999999999999999999999999954 4444444333 33444444556677777788899999998888888


Q ss_pred             hhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHH
Q psy13786        155 AVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSL  212 (219)
Q Consensus       155 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~  212 (219)
                      .+++.+..| +   ++++..+.......+|..+|+.+++.+    |++..++..++..++..
T Consensus       327 ~~~~~~~~~-~---~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~  384 (394)
T PRK10213        327 STWITRSLA-D---QAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTA  384 (394)
T ss_pred             HHHHHHHCc-c---cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHH
Confidence            888998887 4   466777777788888999999998888    77777777665554443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.24  E-value=7.2e-10  Score=90.00  Aligned_cols=130  Identities=18%  Similarity=0.130  Sum_probs=101.9

Q ss_pred             hhcccCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcch
Q psy13786         72 PQMSYLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLAT  151 (219)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~  151 (219)
                      +...|.++.+.|+..+...++..++++..+++.||.++|+.+..+. ..++..+...+.++++...+..++.|++.+...
T Consensus       233 ~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~  311 (393)
T PRK11195        233 PVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGGFFV  311 (393)
T ss_pred             HHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Confidence            3333899999999999999999999999999999999998887775 334444445556777767777888999988888


Q ss_pred             hhhhhhhhhccCCCCccc-hhhHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHHHH
Q psy13786        152 TPAAVYAAECITIHNTDL-RGSLSTWSTIALTSGILLSYLTGAFF---WYTTVAYIGA  205 (219)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~~~---~w~~~~~~~~  205 (219)
                      +...+.+.|..|++   . +|++.++.+....+|..++..+.+..   +-+..+.+.+
T Consensus       312 ~~~~~~~q~~~~~~---~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (393)
T PRK11195        312 VPMNALLQHRGHVL---VGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVG  366 (393)
T ss_pred             hhHHHHHHhhCccc---ccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            77888888876665   5 79999999999999999998887766   4444444433

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.23  E-value=3.2e-10  Score=103.50  Aligned_cols=129  Identities=11%  Similarity=-0.015  Sum_probs=105.9

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhh--------------------hhHHH
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATK--------------------SDLIN  135 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~--------------------~~~~~  135 (219)
                      |.++.+.+++.+...++.+++++..|+++|+.++++.+..+.++..++.+...+.                    ++.+.
T Consensus       257 g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (1140)
T PRK06814        257 GGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWR  336 (1140)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHH
Confidence            8899999999999999999999999999998888877766666655555444332                    66677


Q ss_pred             HHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHH
Q psy13786        136 LYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF-----WYTTVAYIGAFV  207 (219)
Q Consensus       136 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~~~~~~~~~  207 (219)
                      +.+..++.|++.+...+...+++.+..|++   .||+++|..++...+|..+++.+.+.+     ++...+++.++.
T Consensus       337 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~---~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~  410 (1140)
T PRK06814        337 ILIDLFGLAAAGGLYIVPLFAALQAWANPA---HRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA  410 (1140)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhhCCcc---cceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            778888999999999989999999999999   999999999999999999999887766     445555544443

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.23  E-value=1.3e-09  Score=85.29  Aligned_cols=140  Identities=14%  Similarity=0.102  Sum_probs=100.4

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAA  155 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~  155 (219)
                      |++..+++.+...-+....+.+++.|.++||+|||+.-+..+++..++++ +-..+++..++++|++.|++....++.-.
T Consensus        65 g~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~FE  143 (354)
T PF05631_consen   65 GFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSAFE  143 (354)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999885 45568899999999999999999888887


Q ss_pred             hhhhhccCCCC-c-cchhhHHHHHH-HHHHHHHHHHHHHhhhh------hhHHHHHHHHHHHHHHHHHHH
Q psy13786        156 VYAAECITIHN-T-DLRGSLSTWST-IALTSGILLSYLTGAFF------WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       156 ~~~~~~~~~~~-~-~~r~~~~~~~~-~~~~~g~~~~~~~~~~~------~w~~~~~~~~~~~~~~~~~~~  216 (219)
                      +++..-..+++ . +..+...+... ..+++-.+.+.+++..+      |-..+|.....+.+++.+++.
T Consensus       144 sW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~  213 (354)
T PF05631_consen  144 SWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLIL  213 (354)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHH
Confidence            76543332221 0 02333333222 22333334444444443      236678777777666665543

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.23  E-value=6.3e-10  Score=90.14  Aligned_cols=163  Identities=13%  Similarity=0.018  Sum_probs=115.4

Q ss_pred             HHHHHhhhhhhccccccccchhhcc---cCChhhHHHH--HHHHHHHHHHHHhhH-hHhhhhhCCchhhhHhhHHH-HHH
Q psy13786         51 LIVILPGVAPGMSFGFPAVALPQMS---YLTIDQASWF--ASISAITMPIGCLLS-GPIIDKYGRKSALMITNVPS-LCG  123 (219)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~-g~l~d~~Grr~~~~~~~~~~-~~~  123 (219)
                      ..+...++.++.-.+...+.+|.+.   |.+.++.|..  .+...+...+.+++. ++..||+||||..++...+. ...
T Consensus         4 ~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~   83 (390)
T TIGR02718         4 ITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSAC   83 (390)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHH
Confidence            3444556777777777778888777   9999999997  466788888888888 45799999999976655332 222


Q ss_pred             HHHHH-h--hhh-HHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----
Q psy13786        124 WLLMA-T--KSD-LINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----  195 (219)
Q Consensus       124 ~~~~~-~--~~~-~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----  195 (219)
                      ..... +  ..+ ...+.....+.++..+...+....+..|..+++   +++...+....+..+|..+++...+.+    
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~---~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~  160 (390)
T TIGR02718        84 LASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGR---TLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF  160 (390)
T ss_pred             HHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            22222 1  222 223334445555666667777788888888888   888888888888888988888766554    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHH
Q psy13786        196 WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       196 ~w~~~~~~~~~~~~~~~~~~~  216 (219)
                      +||..|++.++..++..+..+
T Consensus       161 gw~~~f~~~a~l~~~~~~~~~  181 (390)
T TIGR02718       161 GQRPAFLLVACVPLASLVCVL  181 (390)
T ss_pred             CHHHHHHHHHHHHHHHHHHHH
Confidence            999999999888776655543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.23  E-value=1.6e-10  Score=96.59  Aligned_cols=117  Identities=13%  Similarity=0.043  Sum_probs=102.5

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHh---hhhHHHHHHHHHHHhhhhhcchh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMAT---KSDLINLYISRLLSGLSVGLATT  152 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~G~~~~~~~~  152 (219)
                      |.++.+.+.......++..++.++.|++.||+|||+.+..+.++..++..+...   .++.+......++.|++.|...+
T Consensus       291 g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~  370 (495)
T PRK14995        291 GLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALL  370 (495)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHH
Confidence            899999999999999999999999999999999999988888888777665543   24555666778999999998888


Q ss_pred             hhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        153 PAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       153 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                      .......+..|++   +++.+.++++....+|..+|+.+.+.+
T Consensus       371 ~~~~~~~~~~~~~---~~g~~~~~~~~~~~lG~~~G~ai~g~i  410 (495)
T PRK14995        371 ASTSAIMAAAPPE---KAAAAGAIETMAYELGAGLGIAIFGLL  410 (495)
T ss_pred             HHHHHHHhcCCHH---hcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888889999999   999999999999999999998888776

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.22  E-value=1e-10  Score=92.71  Aligned_cols=138  Identities=14%  Similarity=0.034  Sum_probs=108.6

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhh-------hhHHHHHHHHHHHhhhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATK-------SDLINLYISRLLSGLSVG  148 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~G~~~~  148 (219)
                      +.++.+.+...+.+.+...+..+.+|+++||+|.+|++.+....++++..+....       .+....+...+..++..|
T Consensus       250 g~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G  329 (417)
T COG2223         250 GLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAG  329 (417)
T ss_pred             CCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhc
Confidence            8999999999999999999999999999999999999999999998888877764       334444443333444444


Q ss_pred             cchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHHHHHHh
Q psy13786        149 LATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF-----WYTTVAYIGAFVSFLSLVLVAM  217 (219)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~~~~~~  217 (219)
                      .....+..++...+|++    -|...|+.....++|++.-|...+..     ++...|++.....+++.+..+.
T Consensus       330 ~GnGsvfk~Ip~if~~~----~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~  399 (417)
T COG2223         330 LGNGSVFKMIPVIFPKE----TGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWA  399 (417)
T ss_pred             cCcchheeechHHHHhh----hhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            44444566677777765    78999999999999998888777766     5888999988888888776653

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.21  E-value=1.1e-10  Score=92.70  Aligned_cols=111  Identities=24%  Similarity=0.266  Sum_probs=96.5

Q ss_pred             cCC-hhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhh---hhHHHHHHHHHHHhhhhhcch
Q psy13786         76 YLT-IDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATK---SDLINLYISRLLSGLSVGLAT  151 (219)
Q Consensus        76 ~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~G~~~~~~~  151 (219)
                      |.+ ..+.+...+...+...++.++.|++.||+|+|+..........+..+.....   ++....++..++.|++.+...
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  317 (352)
T PF07690_consen  238 GFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVF  317 (352)
T ss_dssp             HCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            888 7899999999999999999999999999999888877777766666655443   345666778888999999999


Q ss_pred             hhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHH
Q psy13786        152 TPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSY  189 (219)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  189 (219)
                      +....++.|..|++   +||+..++.+...++|..++|
T Consensus       318 ~~~~~~~~~~~~~~---~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  318 PILFSLIQELVPPE---YRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHCCCHTC---HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHH---HHHHHHHHHHHHHHHHHHHCC
Confidence            99999999999999   999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.21  E-value=2e-10  Score=91.15  Aligned_cols=136  Identities=18%  Similarity=0.201  Sum_probs=121.3

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAA  155 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~  155 (219)
                      |++..+...+....++..++|++++|+|.||+|.|+++.++.+++.+.++...+......+++.-.+.|...|..++..-
T Consensus       284 gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SR  363 (438)
T COG2270         284 GLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSR  363 (438)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHH
Confidence            99999999999999999999999999999999999999999999999888888877777788888999999999999999


Q ss_pred             hhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHHHH
Q psy13786        156 VYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF-----WYTTVAYIGAFVSFLSLVL  214 (219)
Q Consensus       156 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~~~  214 (219)
                      +|..+..|++   +-++..|+++.....+++++|.+.+.+     +-|..+....++..+.++.
T Consensus       364 Sy~~~lvp~~---k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~  424 (438)
T COG2270         364 SYLARLVPKG---KEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLL  424 (438)
T ss_pred             HHHHHhCCCc---cccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhh
Confidence            9999999999   999999999999999999999998887     5666666655555555443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.21  E-value=9.3e-10  Score=88.52  Aligned_cols=140  Identities=14%  Similarity=0.133  Sum_probs=120.1

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAA  155 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~  155 (219)
                      +.+....|.+.+..-+.-++.-.+..++.+|+|.|+.++++..++.+=.+.++++++.+.+.+.+.+.|+..+.......
T Consensus       255 ~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~f  334 (412)
T PF01306_consen  255 GQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAF  334 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666788899999999888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCCCCccchhhHHHH-HHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhh
Q psy13786        156 VYAAECITIHNTDLRGSLSTW-STIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVAMI  218 (219)
Q Consensus       156 ~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~~  218 (219)
                      -|+++.+|++   ..++...+ .+....+|..+.+.+++.+    |++..|++.+.+.++..++..+.
T Consensus       335 kYI~~~fd~r---lsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~  399 (412)
T PF01306_consen  335 KYITAHFDKR---LSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFT  399 (412)
T ss_dssp             HHHHHHS-GG---GHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHh---HHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheee
Confidence            9999999999   88888886 5788899999888888887    88889988888877766665553

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00896 CynX cyanate transporter

Probab=99.21  E-value=3.1e-10  Score=90.74  Aligned_cols=116  Identities=14%  Similarity=-0.004  Sum_probs=91.4

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhh-CCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKY-GRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPA  154 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~  154 (219)
                      |.+..+.+...+...++.+++++..|++.||+ +||+.+.++.++.+++.....+.++..... ..++.|++.+...+..
T Consensus       228 g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~  306 (355)
T TIGR00896       228 GASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLA  306 (355)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHH
Confidence            88999999999999999999999999999999 566677777777777766666554332222 4567899988888887


Q ss_pred             hhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        155 AVYAAECIT-IHNTDLRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       155 ~~~~~~~~~-~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                      ...+.+..+ ++   +++...++.+....++..++|.+.+.+
T Consensus       307 ~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~gp~~~G~l  345 (355)
T TIGR00896       307 LTLIGLRSRQAA---QAAALSAMAQSIGYLLAALGPLFVGVL  345 (355)
T ss_pred             HHHHHHhccCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777766554 45   678888988888888888999888876

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.20  E-value=3.3e-10  Score=93.89  Aligned_cols=144  Identities=12%  Similarity=0.055  Sum_probs=95.7

Q ss_pred             ccchhhcc----cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhh--------hHhhHHH--HHHHHHHHh-hhh
Q psy13786         68 AVALPQMS----YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSAL--------MITNVPS--LCGWLLMAT-KSD  132 (219)
Q Consensus        68 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~--------~~~~~~~--~~~~~~~~~-~~~  132 (219)
                      ..++|.+.    |.+..+.++..+...++..++.++.|+++||+++|+..        ..+....  .+..+.... ..+
T Consensus       281 ~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (465)
T TIGR00894       281 PTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAA  360 (465)
T ss_pred             HHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            34555544    88999999999999999999999999999998765322        1111111  111111122 223


Q ss_pred             HHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh-------hhHHHHHHHH
Q psy13786        133 LINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF-------WYTTVAYIGA  205 (219)
Q Consensus       133 ~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-------~w~~~~~~~~  205 (219)
                      ....++...+.+.+.+...+.......|..| +   .+|...++.+....+|..++|.+.+.+       +|+..|.+.+
T Consensus       361 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~---~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~  436 (465)
T TIGR00894       361 FYLTIIILTLANAVSSGPLAGVLINSLDLAP-R---FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMA  436 (465)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-h---HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHH
Confidence            3334444455555555444444445555554 4   699999999999999999999888875       3888888888


Q ss_pred             HHHHHHHHHH
Q psy13786        206 FVSFLSLVLV  215 (219)
Q Consensus       206 ~~~~~~~~~~  215 (219)
                      +..++..++.
T Consensus       437 ~~~~i~~i~~  446 (465)
T TIGR00894       437 FVNILCVIFY  446 (465)
T ss_pred             HHHHHHHHHe
Confidence            7777766544

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.20  E-value=1.6e-09  Score=88.89  Aligned_cols=119  Identities=18%  Similarity=0.169  Sum_probs=102.9

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhh--hHHHHHHHHHHHhhhhhcchhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKS--DLINLYISRLLSGLSVGLATTP  153 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~~~~~~~  153 (219)
                      |.+ ...+.......++..++.+++++++||+|+|+.+..+.++.+++.++..+.+  +.+.+++..++.|++.+...+.
T Consensus       257 ~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~  335 (428)
T PF13347_consen  257 GNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVI  335 (428)
T ss_pred             cCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccc
Confidence            444 5677888889999999999999999999999999999999999998888775  8899999999999999999999


Q ss_pred             hhhhhhhccCCCC---c-cchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        154 AAVYAAECITIHN---T-DLRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       154 ~~~~~~~~~~~~~---~-~~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                      .+++++|..+.+|   + ++.|...+.++....++..+++.+.+.+
T Consensus       336 ~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~  381 (428)
T PF13347_consen  336 PWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLL  381 (428)
T ss_pred             cccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence            9999999987543   1 2458888899999999998888877765

>KOG2504|consensus

Probab=99.16  E-value=4.2e-10  Score=93.68  Aligned_cols=148  Identities=20%  Similarity=0.273  Sum_probs=128.5

Q ss_pred             ccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhC--CchhhhHhhHHHHHHHHHHHhhhhHHHHHHHH
Q psy13786         66 FPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYG--RKSALMITNVPSLCGWLLMATKSDLINLYISR  140 (219)
Q Consensus        66 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~G--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (219)
                      +....+|.+.   +++..+.+.+.++..+...++.++.|+++|+..  ++.+..++.+..+++...+.+.++++.++..-
T Consensus       316 ~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~  395 (509)
T KOG2504|consen  316 VPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFS  395 (509)
T ss_pred             HHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            3334455544   999999999999999999999999999999987  44566677888888888889999999999999


Q ss_pred             HHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHHHHH
Q psy13786        141 LLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF-----WYTTVAYIGAFVSFLSLVLV  215 (219)
Q Consensus       141 ~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~~~~  215 (219)
                      .+.|++.|.........+.|..+.+   +-..+.|+...+.+++.+++|++++.+     +|...|+..++..+++....
T Consensus       396 ~~fG~~~g~~~~l~~~i~~~~~g~~---~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~  472 (509)
T KOG2504|consen  396 ILFGFCVGSFSSLTPVILVDLVGLE---KLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLL  472 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcChh---hcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHH
Confidence            9999999999888889999999999   899999999999999999999999987     69999999888877776544


Q ss_pred             H
Q psy13786        216 A  216 (219)
Q Consensus       216 ~  216 (219)
                      +
T Consensus       473 ~  473 (509)
T KOG2504|consen  473 L  473 (509)
T ss_pred             H
Confidence            3

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.16  E-value=1.1e-09  Score=89.83  Aligned_cols=143  Identities=12%  Similarity=0.025  Sum_probs=96.4

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHh-h-----hhHHHHHHHHHHHhhhhhc
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMAT-K-----SDLINLYISRLLSGLSVGL  149 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~l~G~~~~~  149 (219)
                      .++............+...+..+++|+++||+|+||++.++.+...++...... .     .+.+.+.+..+...++.|.
T Consensus       282 ~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~  361 (462)
T PRK15034        282 QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGL  361 (462)
T ss_pred             HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcc
Confidence            444433333344556778888999999999999999999988877776643222 1     2455555555444455555


Q ss_pred             chhhhhhhhhhccCC------C-------C-----ccchhhHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHH
Q psy13786        150 ATTPAAVYAAECITI------H-------N-----TDLRGSLSTWSTIALTSGILLSYLTGAFF-----WYTTVAYIGAF  206 (219)
Q Consensus       150 ~~~~~~~~~~~~~~~------~-------~-----~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~~~~~~~~  206 (219)
                      ....+.-++.+.+|+      +       +     .++-|...|+......+|+++.|.+.+..     ++...|+...+
T Consensus       362 gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~  441 (462)
T PRK15034        362 GSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLI  441 (462)
T ss_pred             cchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHH
Confidence            555566666666663      0       0     00346777888888999888888766555     67778888888


Q ss_pred             HHHHHHHHHHhh
Q psy13786        207 VSFLSLVLVAMI  218 (219)
Q Consensus       207 ~~~~~~~~~~~~  218 (219)
                      ..+++.++.|++
T Consensus       442 ~~~~~~~~~w~~  453 (462)
T PRK15034        442 FYIVCVLLTWLV  453 (462)
T ss_pred             HHHHHHHHHHHH
Confidence            888888777653

>TIGR00901 2A0125 AmpG-related permease

Probab=99.16  E-value=4.3e-10  Score=89.92  Aligned_cols=104  Identities=13%  Similarity=0.162  Sum_probs=87.5

Q ss_pred             cCChhhHHHHHHHHH-HHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhh-----------hhHHHHHHHHHHH
Q psy13786         76 YLTIDQASWFASISA-ITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATK-----------SDLINLYISRLLS  143 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~  143 (219)
                      |+++.+.+.+.+... ++..++.+++|++.||+|||+.+..+.++.++...+..+.           ++.+.+....++.
T Consensus       240 g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  319 (356)
T TIGR00901       240 GFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLE  319 (356)
T ss_pred             CCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHH
Confidence            889999998887665 6788999999999999999999888888877766655442           3456677778899


Q ss_pred             hhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHH
Q psy13786        144 GLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALT  182 (219)
Q Consensus       144 G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  182 (219)
                      +++.+...+...+++.|.+|++   +||+..++.+...+
T Consensus       320 ~~~~~~~~~~~~~~~~~~~p~~---~~g~~~g~~~~~~~  355 (356)
T TIGR00901       320 AVTGGLGTVAFVAFLSKLSNPK---FGATQMALLSSLSA  355 (356)
T ss_pred             HHHhHHHHHHHHHHHHHhcCCC---ccHHHHHHHHHHHh
Confidence            9999999999999999999999   99999998877654

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.16  E-value=1.1e-09  Score=88.08  Aligned_cols=142  Identities=15%  Similarity=0.053  Sum_probs=95.4

Q ss_pred             ccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCc---hhhhH-hhHHHHHHHHHHHhhhhHHHHHHHH
Q psy13786         68 AVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRK---SALMI-TNVPSLCGWLLMATKSDLINLYISR  140 (219)
Q Consensus        68 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  140 (219)
                      ..++|.+.   |++.. .+...+...+...++   .++++||..||   +.... .....++.........+....++..
T Consensus       212 ~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  287 (368)
T TIGR00903       212 AIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFI  287 (368)
T ss_pred             HHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHH
Confidence            34556555   66654 555555555555555   46777776543   33332 3334444444444444444445555


Q ss_pred             HHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHHH
Q psy13786        141 LLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF--WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       141 ~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~--~w~~~~~~~~~~~~~~~~~~~  216 (219)
                      .+.+++.....+..+++.+|.+|++   .|+++.|+.+....+|+..+|.+.+.+  +.+..|.+.++..++..+..+
T Consensus       288 ~l~~~~~~~~~~~~~~~~~~~~p~~---~rgt~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       288 GIAGLLMLPAYAIIMDWIGKFCDKE---LHGKAAGAIGFTSRAISVALALAAMLFISSAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             HHHHHhhhhhHHHHHHHHHHhcchh---hcCcccchhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            6677777777777889999999999   999999999999999998888887755  677778777777777666543

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.16  E-value=2.6e-09  Score=86.92  Aligned_cols=134  Identities=12%  Similarity=0.136  Sum_probs=91.4

Q ss_pred             cCChhhHHHHHHHHH-HHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHH---Hhh-hhHHHHHHHH----HHHhhh
Q psy13786         76 YLTIDQASWFASISA-ITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLM---ATK-SDLINLYISR----LLSGLS  146 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~----~l~G~~  146 (219)
                      |.++.+.+++..... ++..++.++.|++.||+|||+.+..+.++..+..+..   +.. ++.+.+.+..    +..|++
T Consensus       241 G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  320 (402)
T PRK11902        241 GFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMG  320 (402)
T ss_pred             CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence            889999999886654 5688999999999999999998877776655554333   333 4555555444    345555


Q ss_pred             hhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHH
Q psy13786        147 VGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~  216 (219)
                      .+...+....++.+.+|.+   +++.    .+...++|...++.+++.+    ||+..|...++++++..++.+
T Consensus       321 ~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~  387 (402)
T PRK11902        321 TAAFVALLMALCNRSFSAT---QYAL----LSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLW  387 (402)
T ss_pred             HHHHHHHHHHhcCCCCcHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            6666666777777777766   6544    3333444554444455544    999999998888877766554

>KOG2563|consensus

Probab=99.16  E-value=1.9e-09  Score=86.29  Aligned_cols=152  Identities=14%  Similarity=0.092  Sum_probs=121.1

Q ss_pred             CCchHHHHHHHHHHHHhhhhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHh
Q psy13786         40 TPTLFRLIYLGLIVILPGVAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMIT  116 (219)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~  116 (219)
                      .+...+||.+++..++..+.+++.+-.++++.....   | +....-|.+.++.+.++...+.+-|+.||+|-|....++
T Consensus        37 ~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llg  115 (480)
T KOG2563|consen   37 HRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLG  115 (480)
T ss_pred             cccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHH
Confidence            456788999999999988888888777776654444   6 666778999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhh------hhHH--HHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHH
Q psy13786        117 NVPSLCGWLLMATK------SDLI--NLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLS  188 (219)
Q Consensus       117 ~~~~~~~~~~~~~~------~~~~--~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  188 (219)
                      .++..++..+-..+      +.++  ....+..+.+..+-.......-...-++|++   +|..+..+-.+++.+|..++
T Consensus       116 t~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~---qra~A~~~~v~~n~LGvavg  192 (480)
T KOG2563|consen  116 TVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPD---QRAIATVLGVMGNPLGVAVG  192 (480)
T ss_pred             HHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcc---hhhhhhhHHHhcchHHHHHH
Confidence            99999999886653      2334  5557778888776655555455666789999   99999998888877887777


Q ss_pred             HHHhhhh
Q psy13786        189 YLTGAFF  195 (219)
Q Consensus       189 ~~~~~~~  195 (219)
                      .++...+
T Consensus       193 ~llppil  199 (480)
T KOG2563|consen  193 FLLPPIL  199 (480)
T ss_pred             hhcccee
Confidence            7776655

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.15  E-value=2.6e-09  Score=86.69  Aligned_cols=137  Identities=20%  Similarity=0.276  Sum_probs=107.9

Q ss_pred             CChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhh-hhHHHHHH----HHHHHhhhhhcch
Q psy13786         77 LTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATK-SDLINLYI----SRLLSGLSVGLAT  151 (219)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~l~G~~~~~~~  151 (219)
                      .+....+...+...+.=++.-...+++..|+|.|+++.++.+..++=..+.+.. ++.+...+    ...+.|+..+...
T Consensus       240 ~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~  319 (400)
T PF03825_consen  240 YSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFH  319 (400)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHH
Confidence            666777777777777777888889999999999999999999999999888886 55444333    3456999999999


Q ss_pred             hhhhhhhhhccCCCCccchhhHHHHHHH-HHHHHHHHHHHHhhhh----------hhHHHHHHHHHHHHHHHHHHH
Q psy13786        152 TPAAVYAAECITIHNTDLRGSLSTWSTI-ALTSGILLSYLTGAFF----------WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~~----------~w~~~~~~~~~~~~~~~~~~~  216 (219)
                      .....|+.+..|++   .|+++.++++. ..++|..++..+++++          .|...+.+.+...++..++.+
T Consensus       320 ~a~~~yi~~~~p~~---~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~  392 (400)
T PF03825_consen  320 AASVRYIDRIAPPE---LRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFV  392 (400)
T ss_pred             HHHHHHHHHhCCcc---chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999   99999997665 5789999999999988          344455555555444444443

>PRK10133 L-fucose transporter; Provisional

Probab=99.14  E-value=1.8e-09  Score=88.87  Aligned_cols=130  Identities=12%  Similarity=0.043  Sum_probs=99.5

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAA  155 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~  155 (219)
                      |.++.+.+.....+.++..++++..|++.||+|||+++..+.++..+...+..+.++.. .+....+.|++.+..+|...
T Consensus       291 g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~P~~~  369 (438)
T PRK10133        291 GMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQYPTIF  369 (438)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999888877776666665555532 24567789999999999999


Q ss_pred             hhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----h-hHHHHHHHHHHHHHH
Q psy13786        156 VYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----W-YTTVAYIGAFVSFLS  211 (219)
Q Consensus       156 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~-w~~~~~~~~~~~~~~  211 (219)
                      +...|..|++    .+.+.++..+ ..+|..++|.+.+.+    | -+..|++..+..+..
T Consensus       370 s~a~~~~~~~----~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~  425 (438)
T PRK10133        370 SLGIKNLGQD----TKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI  425 (438)
T ss_pred             HHHHcccchh----hccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            9999987764    5566666654 335666777676666    4 566666554443333

>TIGR00788 fbt folate/biopterin transporter

Probab=99.13  E-value=1.2e-09  Score=90.58  Aligned_cols=133  Identities=17%  Similarity=0.140  Sum_probs=98.3

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhC-----CchhhhHhhHHHH-HHHHHHHhhhhHHHHH-HHHHHHhhhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYG-----RKSALMITNVPSL-CGWLLMATKSDLINLY-ISRLLSGLSVG  148 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~G-----rr~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~l~G~~~~  148 (219)
                      |+++++.+...+...+...+-.+ +|+++||++     ||+.++++.++.. +.....+..++..... +..++.+++.+
T Consensus        57 g~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a  135 (468)
T TIGR00788        57 GLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKA  135 (468)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence            99999999999999999988555 999999997     6777777766652 3333333334443333 47889999999


Q ss_pred             cchhhhhhhhhhccCCCCccchhhHHHHHH---HHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHH
Q psy13786        149 LATTPAAVYAAECITIHNTDLRGSLSTWST---IALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLV  213 (219)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~  213 (219)
                      ...+...++..|..+ +   ++....+...   .+..+|..+++.+++.+    +|+..|++.++..++..+
T Consensus       136 ~~dv~~da~~~e~~~-~---~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~  203 (468)
T TIGR00788       136 LYDVLVDSLYSERIR-E---SPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLF  203 (468)
T ss_pred             HHHHhHHHHHhhhhh-c---CCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence            999999999999998 5   4544433333   33447888888888876    899999888877766643

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK09848 glucuronide transporter; Provisional

Probab=99.12  E-value=6e-09  Score=86.01  Aligned_cols=120  Identities=14%  Similarity=0.151  Sum_probs=94.7

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhh--hhHHHHHHHHHHHhhhhhcchhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATK--SDLINLYISRLLSGLSVGLATTP  153 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~G~~~~~~~~~  153 (219)
                      |.++...++......++..++.++.+++.||+|+|+.+.++.++..++.+...+.  .+.+.+.+..++.|+|.+...+.
T Consensus       260 g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~  339 (448)
T PRK09848        260 NDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTV  339 (448)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            6655555554555567788899999999999999999999988888877766654  35666667788899999999999


Q ss_pred             hhhhhhhccCCCC---c-cchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        154 AAVYAAECITIHN---T-DLRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       154 ~~~~~~~~~~~~~---~-~~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                      ..++..|..+.+|   + +++|...+.++....+|..+++.+.+.+
T Consensus       340 ~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~  385 (448)
T PRK09848        340 MWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFI  385 (448)
T ss_pred             HHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999887642   1 2458899999999999999988887665

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.11  E-value=3.3e-09  Score=86.35  Aligned_cols=135  Identities=15%  Similarity=0.142  Sum_probs=103.9

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhh-hhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIID-KYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPA  154 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~  154 (219)
                      +.++.+.+++.+...++...+....+++.| |++.|+.+..+.++..++.++.+..++.+.+.+...+.+++.+...+..
T Consensus       239 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~  318 (400)
T PRK11646        239 AGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPAR  318 (400)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccH
Confidence            446778888888877776666655666665 5666777777888888887777778888777777788888888788888


Q ss_pred             hhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh-h-------hHHHHHHHHHHHHHHHH
Q psy13786        155 AVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF-W-------YTTVAYIGAFVSFLSLV  213 (219)
Q Consensus       155 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-~-------w~~~~~~~~~~~~~~~~  213 (219)
                      .+++.|..|++   +||+..++++....+|..++|.+++.+ +       ....++..++..++..+
T Consensus       319 ~~~~~~~~p~~---~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (400)
T PRK11646        319 ETLSASLADAR---ARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLL  382 (400)
T ss_pred             HHHHHhcCCcc---cchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHH
Confidence            99999999999   999999999999999999999999988 1       23455554555444443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.10  E-value=4.7e-09  Score=84.45  Aligned_cols=116  Identities=9%  Similarity=0.096  Sum_probs=81.6

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHH---Hh-hhhHHHHHHHHHHHhhhhhcch
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLM---AT-KSDLINLYISRLLSGLSVGLAT  151 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~l~G~~~~~~~  151 (219)
                      |.++.+.++..+...++..+++++.|++.||+|||+.+..+..+..+..+..   .. ..+.+...+...+.+.+.+...
T Consensus       226 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (377)
T PRK11102        226 GVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMIS  305 (377)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence            8899999999999999999999999999999999999888776544332222   22 2234444444444444445555


Q ss_pred             hhhhhhhhhccCCCCccchhhHHHHHHHH-HHHHHHHHHHHhhhh
Q psy13786        152 TPAAVYAAECITIHNTDLRGSLSTWSTIA-LTSGILLSYLTGAFF  195 (219)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~~~  195 (219)
                      .....++.|..| +   +|++..++.+.. ..+|..+++.++...
T Consensus       306 ~~~~~~~~~~~~-~---~~g~~~~~~~~~~~~~g~~~g~~~~~~~  346 (377)
T PRK11102        306 SNAMAVILDEFP-H---MAGTASSLAGTLRFGIGAIVGALLSLAP  346 (377)
T ss_pred             HHHHHHHhcccc-c---cchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            555666777766 6   799999976543 567777777776544

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.09  E-value=6.7e-09  Score=84.15  Aligned_cols=125  Identities=11%  Similarity=0.014  Sum_probs=83.9

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAA  155 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~  155 (219)
                      |.++.+.+...+...++..++.++.+++.||+|||+.+.++.++..++.+.....++.........+.+.+.+...+.  
T Consensus       235 g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~--  312 (392)
T PRK10473        235 GFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGV--  312 (392)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--
Confidence            889999999999999999999999999999999999999998888887777776655544444444444444333332  


Q ss_pred             hhhhhccCCCCccch-hhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy13786        156 VYAAECITIHNTDLR-GSLSTWSTIALTSGILLSYLTGAFFWYTTVAYIGA  205 (219)
Q Consensus       156 ~~~~~~~~~~~~~~r-~~~~~~~~~~~~~g~~~~~~~~~~~~w~~~~~~~~  205 (219)
                      ....+..|.+   +| +.+.++......+|..+++.+.+..++.......+
T Consensus       313 ~~~~~~~~~~---~~~g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~  360 (392)
T PRK10473        313 AMSQALGPFS---LRAGVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIG  360 (392)
T ss_pred             HHHHHhccCc---ccccHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence            3334455655   44 44444555555666666666655555544333333

>PRK09669 putative symporter YagG; Provisional

Probab=99.06  E-value=4e-09  Score=87.00  Aligned_cols=136  Identities=15%  Similarity=0.135  Sum_probs=96.6

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhh----hCCchhhh-HhhHHHHHHHHHHHhhhh------HHHHHHHHHHHh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDK----YGRKSALM-ITNVPSLCGWLLMATKSD------LINLYISRLLSG  144 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~Grr~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~G  144 (219)
                      |+++.+.|.+.++..+...+..|+.|+++||    +||||..+ ++.+..++...+....++      ...+.+...+.+
T Consensus        41 gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~  120 (444)
T PRK09669         41 GLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLS  120 (444)
T ss_pred             CCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998    78866555 566666666655444332      344445555666


Q ss_pred             hhhhcchhhhhhhhhhccCC-CCccchhhHHHHHHHHHHHHHHHHHHHhhhh-----------hhHHHHHHHHHHHHHHH
Q psy13786        145 LSVGLATTPAAVYAAECITI-HNTDLRGSLSTWSTIALTSGILLSYLTGAFF-----------WYTTVAYIGAFVSFLSL  212 (219)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----------~w~~~~~~~~~~~~~~~  212 (219)
                      .+.+.......++.+|+.++ +   +|.+..+.......+|..+++.+...+           +|+..+.+.++++++..
T Consensus       121 ~~~t~~~ip~~al~~~~t~~~~---eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~  197 (444)
T PRK09669        121 LVYTAINVPYCAMPGAITNDPR---ERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLF  197 (444)
T ss_pred             HHHHhhcchHHHhHHHhcCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence            66666777777899998854 5   799888877777777766665433221           57777776666665554


Q ss_pred             HH
Q psy13786        213 VL  214 (219)
Q Consensus       213 ~~  214 (219)
                      +.
T Consensus       198 ~~  199 (444)
T PRK09669        198 FC  199 (444)
T ss_pred             HH
Confidence            43

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.05  E-value=1.6e-08  Score=76.49  Aligned_cols=126  Identities=17%  Similarity=0.139  Sum_probs=101.5

Q ss_pred             cccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhh-------hhHH
Q psy13786         65 GFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATK-------SDLI  134 (219)
Q Consensus        65 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~-------~~~~  134 (219)
                      +.++.+-|++.   |+|.+|...+.+.-.+|..+| ++.|.+.|++|+|.++.++.+...++......+       .++|
T Consensus        19 Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~   97 (250)
T PF06813_consen   19 YTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVW   97 (250)
T ss_pred             cchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchH
Confidence            33444555555   999999999999999999875 888999999999999999999999888776652       3567


Q ss_pred             HHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        135 NLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       135 ~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                      .+.+..++.|.+.+...+.......+.+|.    +||++.|+.-...++++.+-..+...+
T Consensus        98 ~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~----~RG~vvgilk~~~GLSaai~t~i~~~~  154 (250)
T PF06813_consen   98 LMCLFLFLGGNSSCWFNTASLVTCVRNFPR----SRGTVVGILKGFFGLSAAIFTQIYSAF  154 (250)
T ss_pred             HHHHHHHHHcccHHHhhhHHHHHHHHhCcc----ccCceehhhhHHHHhHHHHHHHHHHHH
Confidence            777777888888777777777888899985    599999999998888877766665555

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.03  E-value=1.9e-08  Score=83.65  Aligned_cols=118  Identities=8%  Similarity=0.095  Sum_probs=90.6

Q ss_pred             ChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHh-----hhhHHHHHHHHHHHhhhhhcchh
Q psy13786         78 TIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMAT-----KSDLINLYISRLLSGLSVGLATT  152 (219)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~G~~~~~~~~  152 (219)
                      ++...+.+.+...++.+++.++.++++||+|+|+.+.++.++..++.+....     .++.+.+++..++.|++.+...+
T Consensus       264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~  343 (473)
T PRK10429        264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV  343 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence            4556677777777889999999999999999999998888776655554432     34556666777888999998889


Q ss_pred             hhhhhhhhccCCCC---c-cchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        153 PAAVYAAECITIHN---T-DLRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       153 ~~~~~~~~~~~~~~---~-~~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                      ..+++++|..+.+|   + ++.|...+.......+|..+++.+.+.+
T Consensus       344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~  390 (473)
T PRK10429        344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVV  390 (473)
T ss_pred             HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999966332   1 1346678888888889988888877765

>KOG4686|consensus

Probab=99.00  E-value=7.9e-09  Score=78.41  Aligned_cols=115  Identities=17%  Similarity=0.095  Sum_probs=93.3

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHH-HHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSL-CGWLLMATKSDLINLYISRLLSGLSVGLATTPA  154 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~  154 (219)
                      |+|+..++.+.+.......+.+++.|.++||+|++-..+.+..+.. .+.....+  +.+.=++...+.|+.........
T Consensus       296 GlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysllAcsl  373 (459)
T KOG4686|consen  296 GLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSLLACSL  373 (459)
T ss_pred             CCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHHHHHHH
Confidence            9999999999999999999999999999999999987776544333 33333333  22223455667788777777778


Q ss_pred             hhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        155 AVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       155 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                      ++.++...|++   +-|++.+..+...++|-.+.|++++.+
T Consensus       374 WP~va~~vpE~---qLGTaygf~qsIqNLgla~i~Iiag~i  411 (459)
T KOG4686|consen  374 WPCVASLVPEE---QLGTAYGFIQSIQNLGLAFIPIIAGFI  411 (459)
T ss_pred             hhhhhhhCCHH---HhcchHHHHHHHHhhhhhHHhhhhhee
Confidence            88999999999   999999999999999999999999988

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.97  E-value=2.2e-07  Score=74.12  Aligned_cols=146  Identities=16%  Similarity=0.133  Sum_probs=118.4

Q ss_pred             cccchhhcccCChhhHHHHHHHHHHHHHHHHhhHhHhhh-hhCCchhhhHhhHHHHHHHHHHHh---hhhHHHHHHHHHH
Q psy13786         67 PAVALPQMSYLTIDQASWFASISAITMPIGCLLSGPIID-KYGRKSALMITNVPSLCGWLLMAT---KSDLINLYISRLL  142 (219)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~Grr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l  142 (219)
                      .-|+-.+..|++..+...++.....|..+|-...|++.. |.++|+.-.+++....++..+...   ..+.+.+...-++
T Consensus       231 LEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l  310 (403)
T PF03209_consen  231 LEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFL  310 (403)
T ss_pred             cCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            345544444999999999999999999999999998766 677778777887777776665444   4677888899999


Q ss_pred             HhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh--------------hhHHHHHHHHHHH
Q psy13786        143 SGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF--------------WYTTVAYIGAFVS  208 (219)
Q Consensus       143 ~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~--------------~w~~~~~~~~~~~  208 (219)
                      .|++.|.+.....+.+.+..+++   +.|..+|.+...+.++..++..+++..              +|..+|.+.++..
T Consensus       311 ~G~g~G~f~vgals~mM~lt~~~---~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll  387 (403)
T PF03209_consen  311 LGLGNGLFTVGALSLMMDLTSAG---RAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLL  387 (403)
T ss_pred             HHHhhhHHHHHHHHHHHhCCCCc---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence            99999999999999999999999   899999999999988888888887766              5667777777666


Q ss_pred             HHHHHHH
Q psy13786        209 FLSLVLV  215 (219)
Q Consensus       209 ~~~~~~~  215 (219)
                      ++++.+.
T Consensus       388 ~~a~~ll  394 (403)
T PF03209_consen  388 LAALVLL  394 (403)
T ss_pred             HHHHHHH
Confidence            6655443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.96  E-value=5.6e-08  Score=80.92  Aligned_cols=132  Identities=19%  Similarity=0.179  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHHHHHhhHhHhhhhhCC-----chhh--hHhhHHHHHHHHHHHh---------hhhHHHHHHHHHHHhh
Q psy13786         82 ASWFASISAITMPIGCLLSGPIIDKYGR-----KSAL--MITNVPSLCGWLLMAT---------KSDLINLYISRLLSGL  145 (219)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~g~l~d~~Gr-----r~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~G~  145 (219)
                      .+++.+...+..++.+++..++-.|.+|     +...  .+|.++.+++....++         ..|++.++...++.++
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~  393 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL  393 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            6788888888888888876654333333     3333  6778888877777664         4688889999999999


Q ss_pred             hhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHH
Q psy13786        146 SVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~  216 (219)
                      |.....|....++.+..|++   .||+.+|++.....+|..+++.+....    +|.+.|...++.+++..++.+
T Consensus       394 ge~~~~p~~~~~~~~~aP~~---~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (475)
T TIGR00924       394 GELMISPLGLSWWTKIAPQR---LMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMA  465 (475)
T ss_pred             HHHHHhHHHHHHHHHhCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999   999999999999999999998887765    677777777766666555543

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.94  E-value=5.9e-08  Score=74.77  Aligned_cols=126  Identities=29%  Similarity=0.353  Sum_probs=103.1

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhh--HHHHHHHHHHHhhhhhcchhhhhhh
Q psy13786         80 DQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSD--LINLYISRLLSGLSVGLATTPAAVY  157 (219)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~G~~~~~~~~~~~~~  157 (219)
                      ...++..+...++..++.++.|++.||+|||+.+..+......+.+...+..+  .+.+.+.|++.|++.+...+....+
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  118 (338)
T COG0477          39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASAL  118 (338)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            46889999999999999999999999999998888887665555566666655  8888999999999999899999999


Q ss_pred             hhhccCC-CCccchhhHHHHHHH-HHHHHHHHHHHHhhhh------hhHHHHHHHHHHH
Q psy13786        158 AAECITI-HNTDLRGSLSTWSTI-ALTSGILLSYLTGAFF------WYTTVAYIGAFVS  208 (219)
Q Consensus       158 ~~~~~~~-~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~~------~w~~~~~~~~~~~  208 (219)
                      +.|..|+ +   +|+...+.... ...+|..++|.++..+      +|+..+.......
T Consensus       119 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (338)
T COG0477         119 LSEWFPEAT---ERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLG  174 (338)
T ss_pred             HHHhcCchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            9999998 6   79999997777 5777888888666655      5888666555444

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.93  E-value=9e-08  Score=80.18  Aligned_cols=129  Identities=12%  Similarity=0.094  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHHHHhhH----hHhhhhhCCchhhhHhhHHHHHHHHHHHhhhh---------HHHHHHHHHHHhhhhh
Q psy13786         82 ASWFASISAITMPIGCLLS----GPIIDKYGRKSALMITNVPSLCGWLLMATKSD---------LINLYISRLLSGLSVG  148 (219)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~----g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~G~~~~  148 (219)
                      .+++++...+...+.+++.    +++.||++.++.+.++.++.+++.+......+         .+.++...++.|++..
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            5566667776666666665    55566666667888899999999888776654         4567888999999999


Q ss_pred             cchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh--------------hhHHHHHHHHHHHHHHHH
Q psy13786        149 LATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF--------------WYTTVAYIGAFVSFLSLV  213 (219)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~--------------~w~~~~~~~~~~~~~~~~  213 (219)
                      ...|....++.+..|++   .||+.+|.+.....+|..++..+....              ++.+.|...++.+++..+
T Consensus       398 ~~~p~g~s~~~~~aP~~---~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~  473 (500)
T PRK09584        398 MISGLGLAMVAQLVPQR---LMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAV  473 (500)
T ss_pred             HHhHHHHHHHHHhCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999   999999999888888888777666421              256777776666554433

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.93  E-value=3.9e-09  Score=84.53  Aligned_cols=105  Identities=17%  Similarity=0.158  Sum_probs=79.9

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHh--hh--hHHHHHHHHHHHhhhhhcch
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMAT--KS--DLINLYISRLLSGLSVGLAT  151 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~l~G~~~~~~~  151 (219)
                      |.++.+.+...+...+...++.++.|+++||+|||+.+..+......+..+...  ..  +.+...+...+.+++.|...
T Consensus       257 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  336 (366)
T TIGR00886       257 GLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGN  336 (366)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcccc
Confidence            888999999999999999999999999999999998888777666665555443  22  55555555555555666666


Q ss_pred             hhhhhhhhhccCCCCccchhhHHHHHHHHHHHH
Q psy13786        152 TPAAVYAAECITIHNTDLRGSLSTWSTIALTSG  184 (219)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  184 (219)
                      +...+.+.|..| +   +||+..|+.+...++|
T Consensus       337 ~~~~~~~~~~~~-~---~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       337 GSTFALVPHIFR-R---ATGAVSGLVGAIGNLG  365 (366)
T ss_pred             chhhhcchhhch-h---hcccHHHHHHHhccCC
Confidence            667778888887 5   6999999888776654

>KOG2532|consensus

Probab=98.92  E-value=5.9e-09  Score=85.94  Aligned_cols=164  Identities=12%  Similarity=0.072  Sum_probs=108.2

Q ss_pred             HHHHHHhhhhhhccccccccchhhcc----cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCc--------h-hhhHh
Q psy13786         50 GLIVILPGVAPGMSFGFPAVALPQMS----YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRK--------S-ALMIT  116 (219)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr--------~-~~~~~  116 (219)
                      +..+.++.+...........+.|.+.    |++..+.|+..++..+.+.+..+++|.++||.-+|        | .-.++
T Consensus       260 vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~  339 (466)
T KOG2532|consen  260 VWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIA  339 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHH
Confidence            44444555555555666666777777    99999999999999999999999999999988552        2 22234


Q ss_pred             hHHHHHHHHHHHhhhh-HHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        117 NVPSLCGWLLMATKSD-LINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       117 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                      ....+++.+..++.++ .....+.-+....+..+..............++   +-+..+++.+....+.++++|.+.+.+
T Consensus       340 ~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq---~a~~l~g~~~~~~~~~~~~~P~~vg~~  416 (466)
T KOG2532|consen  340 FGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQ---HAGFVMGIINFVGALAGFIAPLLVGII  416 (466)
T ss_pred             HHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhccch---HHHHHHHHHHHHHHHHHHHHHHheeeE
Confidence            4444455555555442 111111111122222222222222222222455   689999999999999999999998877


Q ss_pred             -------hhHHHHHHHHHHHHHHHHHHH
Q psy13786        196 -------WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       196 -------~w~~~~~~~~~~~~~~~~~~~  216 (219)
                             .|+++|++.+++.++..+++.
T Consensus       417 ~~~~t~~eW~~VF~i~a~i~~~~~i~f~  444 (466)
T KOG2532|consen  417 VTDNTREEWRIVFLIAAGILIVGNIIFL  444 (466)
T ss_pred             eCCCCHHHHHHHHHHHHHHHHHhchhee
Confidence                   899999999988888765443

>PRK11043 putative transporter; Provisional

Probab=98.91  E-value=8.6e-08  Score=77.95  Aligned_cols=116  Identities=12%  Similarity=0.044  Sum_probs=87.8

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHH---Hh--hhhHHHHHHHHHHHhhhhhcc
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLM---AT--KSDLINLYISRLLSGLSVGLA  150 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~l~G~~~~~~  150 (219)
                      |.++.+.++......++..++....+++.||+|+|+.+....+..+++.+..   ..  .++.+.+.+...+.|++.+..
T Consensus       234 g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (401)
T PRK11043        234 GYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAI  313 (401)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH
Confidence            8899999988888888999999999999999999987766555444443322   12  345555556667788888888


Q ss_pred             hhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        151 TTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                      .+.......|..| +   +|+++.++++.....+...++.+.+.+
T Consensus       314 ~~~~~~~~~~~~~-~---~~g~~~g~~~~~~~~~~~~~~~~~g~l  354 (401)
T PRK11043        314 YPIVVAQALRPFP-Q---ATGKAAALQNTLQLGLCFLASLLVSAL  354 (401)
T ss_pred             HHHHHHHHhhhCc-c---cChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            8888777777765 5   699999999888777777777777665

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.90  E-value=1.7e-07  Score=73.47  Aligned_cols=163  Identities=15%  Similarity=0.067  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHhhhhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhh-hCCchhhhHhhHHHH
Q psy13786         46 LIYLGLIVILPGVAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDK-YGRKSALMITNVPSL  121 (219)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~  121 (219)
                      .|.+.+.+.+-++.    .+....++|.+.   |+|..+.|+..+...+.+...++....+.+| -.+|+..+....+..
T Consensus       210 aW~vtLfmGlqS~~----~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l  285 (395)
T COG2807         210 AWQVTLFMGLQSLL----YYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLML  285 (395)
T ss_pred             hHHHHHHHHhhHHH----HHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            44444444433333    333345677766   9999999999999999999999999999985 456777777777777


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccch-hhHHHHHHHHHHHHHHHHHHHhhhh-----
Q psy13786        122 CGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLR-GSLSTWSTIALTSGILLSYLTGAFF-----  195 (219)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~g~~~~~~~~~~~-----  195 (219)
                      ++...+.+.+....+.- .++.|++.|..++.....+.+-.++.   ++ +.-.++.+....+=..++|.+.+++     
T Consensus       286 ~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a---~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g  361 (395)
T COG2807         286 VGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDA---AIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG  361 (395)
T ss_pred             HHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCCh---HHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC
Confidence            88777777654433333 48999999999999999998887765   44 3334455555555555778888887     


Q ss_pred             hhHHHHHHHHHHHHHHHHHHH
Q psy13786        196 WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       196 ~w~~~~~~~~~~~~~~~~~~~  216 (219)
                      +|+...+..+...++..+.-+
T Consensus       362 sw~~~~~~l~~~~i~m~i~Gl  382 (395)
T COG2807         362 SWSAPLVLLALATLLMLIFGL  382 (395)
T ss_pred             ChHHHHHHHHHHHHHHHHHHh
Confidence            899888887777766665443

>PRK09669 putative symporter YagG; Provisional

Probab=98.90  E-value=2.2e-07  Score=76.73  Aligned_cols=115  Identities=18%  Similarity=0.187  Sum_probs=87.6

Q ss_pred             hHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHh--hhhHHHHHHHHHHHhhhhhcchhhhhhhh
Q psy13786         81 QASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMAT--KSDLINLYISRLLSGLSVGLATTPAAVYA  158 (219)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~G~~~~~~~~~~~~~~  158 (219)
                      ..+.+.....+..+++.+++++++||+|+|+.+.++.++..+......+  .++.+.+++..++.|++.+...+..++++
T Consensus       265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~  344 (444)
T PRK09669        265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMF  344 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556667788889999999999999999998887666543332222  35666677788899999999999999999


Q ss_pred             hhccCCCC---c-cchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        159 AECITIHN---T-DLRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       159 ~~~~~~~~---~-~~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                      +|..+.+|   + +..|...+.++.+..+|..+++.+++.+
T Consensus       345 ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l  385 (444)
T PRK09669        345 SDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI  385 (444)
T ss_pred             HhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99886432   1 1346777888888899999998888766

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.88  E-value=6.5e-08  Score=80.50  Aligned_cols=134  Identities=10%  Similarity=0.094  Sum_probs=92.6

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhh----hhCCchhh-hHhhHHHHHHHHHHHhhh----h--HHHHHHHHHHHh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIID----KYGRKSAL-MITNVPSLCGWLLMATKS----D--LINLYISRLLSG  144 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~Grr~~~-~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~l~G  144 (219)
                      |+++...|.+..+..+.-.+..|+.|+++|    |+||||.+ +++.+..+++..++...+    +  +..+.+...+.+
T Consensus        38 Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~  117 (473)
T PRK10429         38 GLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWG  117 (473)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999    66996554 456666666655544322    1  223444556667


Q ss_pred             hhhhcchhhhhhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHHHHhhh----h-------hhHHHHHHHHHHHHHHH
Q psy13786        145 LSVGLATTPAAVYAAECIT-IHNTDLRGSLSTWSTIALTSGILLSYLTGAF----F-------WYTTVAYIGAFVSFLSL  212 (219)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~----~-------~w~~~~~~~~~~~~~~~  212 (219)
                      ++.........++..|..+ ++   +|.+..+.-.....+|+.+.+.+...    .       +|+....+.+++.++..
T Consensus       118 ~~~t~~~ip~~al~~~lt~~~~---eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~  194 (473)
T PRK10429        118 MTYTIMDIPFWSLVPTLTLDKR---EREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVST  194 (473)
T ss_pred             HHHHHHcchHHhhhHHhCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence            7777778888899999984 66   89998887666666665554433221    1       45655555555544433

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.86  E-value=1e-08  Score=84.12  Aligned_cols=139  Identities=20%  Similarity=0.272  Sum_probs=106.9

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhh----hhCCchhhh-HhhHHHHHHHHHHHhh-h-------hHHHHHHHHHH
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIID----KYGRKSALM-ITNVPSLCGWLLMATK-S-------DLINLYISRLL  142 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~Grr~~~~-~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~l  142 (219)
                      |+++...+.+..+..+...+..|+.|.++|    |+||||..+ ++.+...++.+++... +       ....+.+..++
T Consensus        33 gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l  112 (428)
T PF13347_consen   33 GLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYIL  112 (428)
T ss_pred             CCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHH
Confidence            999999999999999999999999999999    899887766 5777777777776654 3       12234566667


Q ss_pred             HhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh-----------hhHHHHHHHHHHHHHH
Q psy13786        143 SGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF-----------WYTTVAYIGAFVSFLS  211 (219)
Q Consensus       143 ~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----------~w~~~~~~~~~~~~~~  211 (219)
                      ..++.........++..|..+++|  +|.+..+....+..+|..+...+...+           +|++...+.+++.++.
T Consensus       113 ~~~~~t~~~i~~~al~~~lt~~~~--~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~  190 (428)
T PF13347_consen  113 FDIAYTFVQIPYNALIPELTPDPD--ERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVF  190 (428)
T ss_pred             HHHhhhhccCchhhcCccccccHh--hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHH
Confidence            788888888888999999998531  899999988888888886555444433           4788777777776666


Q ss_pred             HHHHH
Q psy13786        212 LVLVA  216 (219)
Q Consensus       212 ~~~~~  216 (219)
                      .+...
T Consensus       191 ~~i~~  195 (428)
T PF13347_consen  191 FLITF  195 (428)
T ss_pred             hhhhh
Confidence            55544

>KOG3764|consensus

Probab=98.85  E-value=1e-08  Score=81.00  Aligned_cols=152  Identities=13%  Similarity=0.121  Sum_probs=117.0

Q ss_pred             ccccccchhhcc----cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhC--CchhhhHhhHHHHHHHHHHHhhhhHHHHH
Q psy13786         64 FGFPAVALPQMS----YLTIDQASWFASISAITMPIGCLLSGPIIDKYG--RKSALMITNVPSLCGWLLMATKSDLINLY  137 (219)
Q Consensus        64 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~G--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (219)
                      ....-|.++.+.    ..+.++.|...--..+.+.++..+.|.++||++  |-.....+.+..+.++....+++++..++
T Consensus       286 lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~  365 (464)
T KOG3764|consen  286 LAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLW  365 (464)
T ss_pred             HHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHh
Confidence            333344444433    544568888888889999999999999999999  54455556666667777778899999999


Q ss_pred             HHHHHHhhhhhcchhhhhhhhhhccCCCCc---cchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHH
Q psy13786        138 ISRLLSGLSVGLATTPAAVYAAECITIHNT---DLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFL  210 (219)
Q Consensus       138 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~---~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~  210 (219)
                      +-++..|++.+...+.......+....+..   ...|...++...++++|..+||.+++.+    |++|...+.++..++
T Consensus       366 vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~i  445 (464)
T KOG3764|consen  366 VPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLI  445 (464)
T ss_pred             hhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHH
Confidence            999999998888887777777777655421   1346788899999999999999999988    889988888887776


Q ss_pred             HHHHH
Q psy13786        211 SLVLV  215 (219)
Q Consensus       211 ~~~~~  215 (219)
                      ...+.
T Consensus       446 yapvl  450 (464)
T KOG3764|consen  446 YAPVL  450 (464)
T ss_pred             HHHHH
Confidence            65443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.83  E-value=4.8e-07  Score=73.98  Aligned_cols=120  Identities=17%  Similarity=0.224  Sum_probs=99.5

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhh--hHHHHHHHHHHHhhhhhcchhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKS--DLINLYISRLLSGLSVGLATTP  153 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~~~~~~~  153 (219)
                      |.++............+.+++.++..++.+|+|+|+++.++.++..++....-+.+  +.+.+++...+.+++.+...+.
T Consensus       268 g~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l  347 (467)
T COG2211         268 GDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPL  347 (467)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccc
Confidence            66777777888888888888899999999999999999999999999988887754  7788888889999999999999


Q ss_pred             hhhhhhhccCCCC---c-cchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        154 AAVYAAECITIHN---T-DLRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       154 ~~~~~~~~~~~~~---~-~~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                      .+++++|...-.|   + +.-|...+.+....-+|..++..+.++.
T Consensus       348 ~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~  393 (467)
T COG2211         348 PWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWI  393 (467)
T ss_pred             cHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999886655   2 2336777788888878877777665554

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.83  E-value=3e-07  Score=74.55  Aligned_cols=116  Identities=14%  Similarity=0.016  Sum_probs=87.9

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhh-HHHHHHHHHHHh--hhhHHHHHHHHHHHhhhhhcchh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITN-VPSLCGWLLMAT--KSDLINLYISRLLSGLSVGLATT  152 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~l~G~~~~~~~~  152 (219)
                      |.++.+.++......++..+++.+.+++.||++++....... ....+.......  ..+.+.+.....+.|++.+...+
T Consensus       239 g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  318 (394)
T PRK11652        239 GLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFP  318 (394)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            888889999988889999999999999999998433322222 122122122222  23556667778899999998889


Q ss_pred             hhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        153 PAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       153 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                      ....+..|..| +   ++++..++.+....+|..+++.+++..
T Consensus       319 ~~~~~~~~~~~-~---~~g~~~~~~~~~~~lg~~~~~~~~~~~  357 (394)
T PRK11652        319 LATSGAMEPFP-Y---LAGTAGALLGGLQNIGSGLAALLSAML  357 (394)
T ss_pred             HHHHHHHhhcc-c---cchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999887 4   589999999999999999999988877

>PRK11462 putative transporter; Provisional

Probab=98.80  E-value=2.6e-07  Score=76.70  Aligned_cols=135  Identities=17%  Similarity=0.146  Sum_probs=98.7

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhh----hCCchhhh-HhhHHHHHHHHHHHhhhh------HHHHHHHHHHHh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDK----YGRKSALM-ITNVPSLCGWLLMATKSD------LINLYISRLLSG  144 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~Grr~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~G  144 (219)
                      |+++...|.+..+.-+.-.+.-|+.|+++||    +||||+.+ ++.+..+++..++...++      ...+.+.-.+..
T Consensus        41 Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~  120 (460)
T PRK11462         41 GIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLT  120 (460)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHH
Confidence            9999999999999999999999999999995    79887666 466677766665544332      233444556667


Q ss_pred             hhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh-----------hhHHHHHHHHHHHHHHH
Q psy13786        145 LSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF-----------WYTTVAYIGAFVSFLSL  212 (219)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----------~w~~~~~~~~~~~~~~~  212 (219)
                      ++.........++..|..++.+  +|.+..++-..+..+|..+++.+...+           +|+....+.+++.++..
T Consensus       121 ~~~t~~~ipy~al~~~lt~d~~--eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~  197 (460)
T PRK11462        121 LLYTVVNIPYCALGGVITNDPT--QRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMML  197 (460)
T ss_pred             HHHHHHhccHHHHHHHhcCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence            7788888888899999987532  899999998888888877766554332           46655555555544443

>TIGR00788 fbt folate/biopterin transporter

Probab=98.80  E-value=7.7e-08  Score=79.92  Aligned_cols=117  Identities=12%  Similarity=0.008  Sum_probs=100.6

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHh----------hhhHHHHHHHHHHHhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMAT----------KSDLINLYISRLLSGL  145 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~G~  145 (219)
                      |.++.+.|.......++.+++....+++.+|++.|+++.++.++..++......          .++.+.+....++.++
T Consensus       284 G~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~  363 (468)
T TIGR00788       284 PGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEV  363 (468)
T ss_pred             CCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHH
Confidence            999999999999999999999999999999999999999999888887755321          1333344556778888


Q ss_pred             hhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        146 SVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                      +.+........++.+..|++   .+|+..++.+...++|..+++.+++.+
T Consensus       364 ~~g~~~~~~~~~~~~~~p~~---~egt~~al~~s~~~lg~~v~~~~gg~l  410 (468)
T TIGR00788       364 LAQLKFMPFLVLLARLCPSG---CESSVFALLASILHLGSSVSGFLGVLL  410 (468)
T ss_pred             HHHHHHccHHHHHHHhCCCC---ceehHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888899999999999   999999999999999999999888877

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.80  E-value=1.8e-07  Score=76.44  Aligned_cols=112  Identities=12%  Similarity=-0.014  Sum_probs=85.5

Q ss_pred             ChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhhhh
Q psy13786         78 TIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVY  157 (219)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~  157 (219)
                      +....+...+....+..+|.++++++.||+++|+++.+..++..+..++....++... ...-++.|++.+..+|...+.
T Consensus       267 ~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~sl  345 (410)
T TIGR00885       267 TAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTIYGI  345 (410)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            3444455666666788899999999999999999999988888888888877766544 456677888888888999999


Q ss_pred             hhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        158 AAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       158 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                      ..+..+++   .+....++.. . .+|+.+.|++.+.+
T Consensus       346 ~~~~~g~~---~~~~s~~l~~-~-~~Gga~~p~l~G~~  378 (410)
T TIGR00885       346 ALKGLGQD---TKYGAAGLVM-A-IIGGGIVPPLQGFI  378 (410)
T ss_pred             HHhhhhhh---hhhhHHHHHH-H-HhccchHHHHHHHH
Confidence            99999876   4433333333 2 28899999888877

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG3762|consensus

Probab=98.79  E-value=2.4e-08  Score=81.72  Aligned_cols=138  Identities=16%  Similarity=0.107  Sum_probs=119.2

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAA  155 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~  155 (219)
                      +-.+.--|........+-+..-++.+++.+|+|+-+++..+..+..+=.+..+..+|.|..+...+++|+..+..+....
T Consensus       402 ~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~  481 (618)
T KOG3762|consen  402 GGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAII  481 (618)
T ss_pred             CCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHH
Confidence            44455556667777788888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCCCCccchhhHHHH-HHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHH
Q psy13786        156 VYAAECITIHNTDLRGSLSTW-STIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       156 ~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~  216 (219)
                      +|+++..||+   .|.++.++ .....++|-.+|.++++.+    +-|..|.+.++.+++.+++..
T Consensus       482 sY~s~vaPp~---l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~  544 (618)
T KOG3762|consen  482 SYASHVAPPG---LRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFI  544 (618)
T ss_pred             HHHHhhCCCc---chHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999   99999995 5566688888888888877    778888888888777766543

>KOG0252|consensus

Probab=98.79  E-value=9.3e-09  Score=82.63  Aligned_cols=120  Identities=15%  Similarity=0.095  Sum_probs=91.1

Q ss_pred             HHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhh----HHHHHHHH-HHHhhhhhcchhhhhhhhhhccCCCCccc
Q psy13786         95 IGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSD----LINLYISR-LLSGLSVGLATTPAAVYAAECITIHNTDL  169 (219)
Q Consensus        95 ~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~l~G~~~~~~~~~~~~~~~~~~~~~~~~~  169 (219)
                      .|..+..++.|++|||+..+-+.+++.+..+..+...|    -..+.+.- +.+-++.-+.....-.+.+|.+|.+   .
T Consensus       363 PGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPar---v  439 (538)
T KOG0252|consen  363 PGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPAR---V  439 (538)
T ss_pred             CceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHH---H
Confidence            35666778899999999999999999999888887655    11222221 2222233344566677889999999   9


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhh---------hhHHHHHHHHHHHHHHHHHHHh
Q psy13786        170 RGSLSTWSTIALTSGILLSYLTGAFF---------WYTTVAYIGAFVSFLSLVLVAM  217 (219)
Q Consensus       170 r~~~~~~~~~~~~~g~~~~~~~~~~~---------~w~~~~~~~~~~~~~~~~~~~~  217 (219)
                      |++..|+..++.-.|.+++......+         +.++++++.+.+..+..+..++
T Consensus       440 R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l  496 (538)
T KOG0252|consen  440 RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLL  496 (538)
T ss_pred             hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEE
Confidence            99999999999999999998777665         6788999998888887765543

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.79  E-value=4.2e-07  Score=78.07  Aligned_cols=141  Identities=13%  Similarity=0.174  Sum_probs=112.0

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhh-hCCchhhhHhhHHHHHHHHHHHhhhh--------HHHHHHHHHHHhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDK-YGRKSALMITNVPSLCGWLLMATKSD--------LINLYISRLLSGLS  146 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~G~~  146 (219)
                      |.+..++..+...+....-+...++|+++|+ +||++.+.++.++..++..+.++...        ....+++..+...|
T Consensus        19 g~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G   98 (654)
T TIGR00926        19 GFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALG   98 (654)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhh
Confidence            7888888888888888888888999999995 79999999999999999888776321        23356677888889


Q ss_pred             hhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh-----------hhHHHHHHHHHHHHHHHHHH
Q psy13786        147 VGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF-----------WYTTVAYIGAFVSFLSLVLV  215 (219)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----------~w~~~~~~~~~~~~~~~~~~  215 (219)
                      .|+.-+...+...|.+++++.+.|-....++..+.++|+++++.+..++           +|...|.+.++..+++.+..
T Consensus        99 ~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf  178 (654)
T TIGR00926        99 TGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVF  178 (654)
T ss_pred             ccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999765211367778888899999999998887766           27778888877777766554


Q ss_pred             H
Q psy13786        216 A  216 (219)
Q Consensus       216 ~  216 (219)
                      .
T Consensus       179 ~  179 (654)
T TIGR00926       179 M  179 (654)
T ss_pred             H
Confidence            3

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.78  E-value=9.1e-08  Score=77.20  Aligned_cols=143  Identities=17%  Similarity=0.160  Sum_probs=81.3

Q ss_pred             cccchhhcccCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHH--HHHHH-Hh----hhhHH-HHHH
Q psy13786         67 PAVALPQMSYLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLC--GWLLM-AT----KSDLI-NLYI  138 (219)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~--~~~~~-~~----~~~~~-~~~~  138 (219)
                      ...++.+..|++++++|.+.++..+...+.+|+.|.++||+|.||.+++......+  +.+.. .+    ..|.+ ..++
T Consensus        30 ~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~ii  109 (412)
T PF01306_consen   30 FPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAII  109 (412)
T ss_dssp             HHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHH
T ss_pred             HHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344332299999999999999999999999999999999988766544332221  22111 11    12322 2233


Q ss_pred             HHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHHHHH
Q psy13786        139 SRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF---WYTTVAYIGAFVSFLSLVL  214 (219)
Q Consensus       139 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~  214 (219)
                      +-...|+......++.-++..+...     +.+.-.|=.-+++++|..++..+++.+   +-...|++.....++..++
T Consensus       110 g~i~l~~~f~~~~~~~Ea~~er~sr-----~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~il~ll  183 (412)
T PF01306_consen  110 GGIYLGLVFNAGVPLSEAYAERVSR-----RNGFEYGRARMWGSIGFAIASLLAGILFNINPNIIFWIASAAAIILLLL  183 (412)
T ss_dssp             TTTTTTTTTTTHHHHHHHHHHHHHH-----HHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcccchHHHHHHHHHHH-----HhcCCcchHHHHhhHHHHHHHHHhheeeeeCccHHHHHHHHHHHHHHHH
Confidence            3333444444444555555544432     223344445567777777777777776   4455677655554444433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.77  E-value=5.3e-07  Score=75.33  Aligned_cols=131  Identities=16%  Similarity=0.151  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHHHHHhhHhHhhhhhCCchh-------hhHhhHHHHHHHHHHH-----hh-----hhHHHHHHHHHHHh
Q psy13786         82 ASWFASISAITMPIGCLLSGPIIDKYGRKSA-------LMITNVPSLCGWLLMA-----TK-----SDLINLYISRLLSG  144 (219)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~-------~~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~~~l~G  144 (219)
                      .+++++...+..++.+++.+++.||+++|+.       +.+|.++.+++.+..+     ..     .+.+.++..-++.|
T Consensus       311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g  390 (489)
T PRK10207        311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS  390 (489)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence            3566666777788889999999999999974       6777777766654321     11     34666777889999


Q ss_pred             hhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh--------------hhHHHHHHHHHHHHH
Q psy13786        145 LSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF--------------WYTTVAYIGAFVSFL  210 (219)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~--------------~w~~~~~~~~~~~~~  210 (219)
                      +|.+...+....++.+..|++   .++.++++++....+|+.++..++...              .+.+.|...++.+++
T Consensus       391 ~Ge~~~~~~g~~~~~~~aP~~---~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~  467 (489)
T PRK10207        391 LGELFISALGLAMIAALVPQH---LMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLG  467 (489)
T ss_pred             HHHHHHhHHHHHHHHHhChHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHH
Confidence            999999999999999999999   999999999999999999988777432              245666666655555


Q ss_pred             HHHHH
Q psy13786        211 SLVLV  215 (219)
Q Consensus       211 ~~~~~  215 (219)
                      ..++.
T Consensus       468 ~~v~~  472 (489)
T PRK10207        468 VAVVM  472 (489)
T ss_pred             HHHHH
Confidence            44443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.75  E-value=2.1e-07  Score=75.66  Aligned_cols=101  Identities=19%  Similarity=0.194  Sum_probs=79.7

Q ss_pred             ccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhC-CchhhhHhhHHHHHHHHHHHhhhhHHHHHHH
Q psy13786         64 FGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYG-RKSALMITNVPSLCGWLLMATKSDLINLYIS  139 (219)
Q Consensus        64 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~G-rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (219)
                      .+...|+++.+.   |+|..|+|.+.+...+..+++++++|+++||.+ +||.+.+..++.++........++++.+...
T Consensus        18 ~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~   97 (400)
T PF03825_consen   18 YGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVI   97 (400)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            333445555554   999999999999999999999999999999986 5677777777777766667778888888888


Q ss_pred             HHHHhhhhhcchhhhhhhhhhccCC
Q psy13786        140 RLLSGLSVGLATTPAAVYAAECITI  164 (219)
Q Consensus       140 ~~l~G~~~~~~~~~~~~~~~~~~~~  164 (219)
                      .++..+......|...++..+...+
T Consensus        98 ~~l~~~~~~p~~pl~dsi~~~~~~~  122 (400)
T PF03825_consen   98 MLLFSFFFSPTMPLSDSIALSYLGD  122 (400)
T ss_pred             HHHHHHHHccHHHHHHHHHHHHccc
Confidence            8888887777777777777777653

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.68  E-value=9.6e-11  Score=96.59  Aligned_cols=127  Identities=19%  Similarity=0.141  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHH--h---hhh-----HHHHHHHHHHHhhhhhcchhhhhh
Q psy13786         87 SISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMA--T---KSD-----LINLYISRLLSGLSVGLATTPAAV  156 (219)
Q Consensus        87 ~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~--~---~~~-----~~~~~~~~~l~G~~~~~~~~~~~~  156 (219)
                      ....+...++.+...++.||+|||+.++.+.....++.+..+  .   .++     ...+............+..+..+.
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~  372 (451)
T PF00083_consen  293 LILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWI  372 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccc
Confidence            344455666777777999999999999999888887777664  1   121     222222221111112234566778


Q ss_pred             hhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHH
Q psy13786        157 YAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       157 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~  216 (219)
                      +..|.+|.+   .|+++.++......+++.+++.+....    +-...+.+.+.++++..+..+
T Consensus       373 ~~~ElfPt~---~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~  433 (451)
T PF00083_consen  373 YTAELFPTK---VRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVY  433 (451)
T ss_pred             ccccccccc---ccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhhee
Confidence            999999999   999999998888888888888776665    212345555555555554443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.68  E-value=9.6e-07  Score=72.24  Aligned_cols=139  Identities=22%  Similarity=0.253  Sum_probs=106.2

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhh----hCCchhhh-HhhHHHHHHHHHHHhhhh------HHHHHHHHHHHh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDK----YGRKSALM-ITNVPSLCGWLLMATKSD------LINLYISRLLSG  144 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~Grr~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~G  144 (219)
                      |+++..+|.+..+.-+--++.-|+.|.+.||    +||||+.+ ++.+..++.+.++-.+++      ..-..+.-.+.+
T Consensus        44 Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~  123 (467)
T COG2211          44 GLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLG  123 (467)
T ss_pred             CCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHH
Confidence            9999999999999999999999999999995    78876655 566777777777766552      334455678888


Q ss_pred             hhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh-----------hhHHHHHHHHHHHHHHHH
Q psy13786        145 LSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF-----------WYTTVAYIGAFVSFLSLV  213 (219)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----------~w~~~~~~~~~~~~~~~~  213 (219)
                      ++.........++.+|+.++.+  +|.+..++-..+..+|.++...+...+           ||+....+.+++.++..+
T Consensus       124 l~YT~vniPy~al~~~iT~d~~--ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l  201 (467)
T COG2211         124 LGYTLVNIPYGALGPEITQDPQ--ERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLL  201 (467)
T ss_pred             HHHHheeCchhhcchhhcCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHH
Confidence            8888888888899999986642  899999998888888877665555443           677666666666655555


Q ss_pred             HHH
Q psy13786        214 LVA  216 (219)
Q Consensus       214 ~~~  216 (219)
                      ..+
T Consensus       202 ~~~  204 (467)
T COG2211         202 FCF  204 (467)
T ss_pred             HHH
Confidence            444

>PRK11462 putative transporter; Provisional

Probab=98.66  E-value=4e-06  Score=69.67  Aligned_cols=116  Identities=16%  Similarity=0.123  Sum_probs=75.3

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhh--hhHHHHHHHHHHHhhhhhcchhhhhhh
Q psy13786         80 DQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATK--SDLINLYISRLLSGLSVGLATTPAAVY  157 (219)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~G~~~~~~~~~~~~~  157 (219)
                      ...+.+.....++.+++.+++++++||+|+|+.+..+.....+..++..+.  ++...+.+.-++.|++.+...+..+++
T Consensus       263 ~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m  342 (460)
T PRK11462        263 EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVM  342 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566777888899999999999999999998775554444433333232  223334445566777777766766778


Q ss_pred             hhhccCCCC---cc-chhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        158 AAECITIHN---TD-LRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       158 ~~~~~~~~~---~~-~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                      +.|..+.+|   ++ +.|...+.......+|..+++.+.+.+
T Consensus       343 ~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~i  384 (460)
T PRK11462        343 MSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWM  384 (460)
T ss_pred             HHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887766322   11 234545666677777777777666654

>KOG0254|consensus

Probab=98.65  E-value=2.1e-06  Score=72.22  Aligned_cols=165  Identities=15%  Similarity=0.078  Sum_probs=101.8

Q ss_pred             hHHHHHHHHHHHHhhhhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHH
Q psy13786         43 LFRLIYLGLIVILPGVAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVP  119 (219)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~  119 (219)
                      .+++......+.......+  ......+.+++.   |.+... .+......+...++..+..++.||+|||+.++.+.+.
T Consensus       292 ~~~~~~i~~~l~~fqq~tG--~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~  368 (513)
T KOG0254|consen  292 VRKRLIIGLLLQLFQQLTG--INYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAG  368 (513)
T ss_pred             hHHHHHHHHHHHHHHHHhC--CceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHH
Confidence            3444444444433333333  333334444444   555443 5566666777778888889999999999999999999


Q ss_pred             HHHHHHHHHhhhh-------------HHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHH
Q psy13786        120 SLCGWLLMATKSD-------------LINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGIL  186 (219)
Q Consensus       120 ~~~~~~~~~~~~~-------------~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  186 (219)
                      +.++.++.+....             ...+...-+.......+..++.+.+.+|.+|.+   .|+++.++......+...
T Consensus       369 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~---~r~~~~s~~~~~n~~~~~  445 (513)
T KOG0254|consen  369 MSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLR---LRSKGASLAVAVNWLWNF  445 (513)
T ss_pred             HHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHh---HHhhhHHHHHHHHHHHHH
Confidence            9999888775311             122222233333333445577778999999999   999999987777766665


Q ss_pred             HHHHHhhhh-h---hHHHHHHHHHHHHHHHH
Q psy13786        187 LSYLTGAFF-W---YTTVAYIGAFVSFLSLV  213 (219)
Q Consensus       187 ~~~~~~~~~-~---w~~~~~~~~~~~~~~~~  213 (219)
                      +-....... .   +...|...+..+.+...
T Consensus       446 ~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~  476 (513)
T KOG0254|consen  446 LISFFFPFITEALGIGGTFGYFGGICLLSLI  476 (513)
T ss_pred             HHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence            543333333 2   24455555555555544

>KOG2816|consensus

Probab=98.63  E-value=1.6e-06  Score=71.51  Aligned_cols=122  Identities=21%  Similarity=0.269  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhh--hhcchhhhhhhhhhccCCC
Q psy13786         88 ISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLS--VGLATTPAAVYAAECITIH  165 (219)
Q Consensus        88 ~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~--~~~~~~~~~~~~~~~~~~~  165 (219)
                      ...+...+.++..|.++||+|||..+....+...+..+...+.. +|.+.    +.++.  .+.......++++|....+
T Consensus        70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~  144 (463)
T KOG2816|consen   70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEE  144 (463)
T ss_pred             hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchh
Confidence            44677888999999999999999999998888877777666655 33333    33332  2345677788999999999


Q ss_pred             CccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHh
Q psy13786        166 NTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVAM  217 (219)
Q Consensus       166 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~  217 (219)
                         +|....++.+.....+..++|.+++..    +.-.++.+..+..++..+...+
T Consensus       145 ---~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~  197 (463)
T KOG2816|consen  145 ---ERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLL  197 (463)
T ss_pred             ---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhh
Confidence               999999999999999999999999987    6667777777777766665544

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.61  E-value=1.9e-06  Score=71.38  Aligned_cols=134  Identities=12%  Similarity=0.068  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHHHhhHhHhhhhhCC-chhhhHhhHHHHHHHHHHHhhhh---------------------HHHHHHHHH
Q psy13786         84 WFASISAITMPIGCLLSGPIIDKYGR-KSALMITNVPSLCGWLLMATKSD---------------------LINLYISRL  141 (219)
Q Consensus        84 ~~~~~~~~~~~~~~~~~g~l~d~~Gr-r~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~  141 (219)
                      +....+.+...+.+++..++.+|+|+ |++..++.++.+++.....+.++                     .+..++...
T Consensus       309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  388 (477)
T TIGR01301       309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFA  388 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHH
Confidence            44555566666777888899999995 66768888888877777665432                     266777788


Q ss_pred             HHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh------hhHHHHHHHHHHHHHHHHHH
Q psy13786        142 LSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF------WYTTVAYIGAFVSFLSLVLV  215 (219)
Q Consensus       142 l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~------~w~~~~~~~~~~~~~~~~~~  215 (219)
                      +.|+..+..+..-++++++..+++ ++..|..+|+.|.+..+.+.+..+..+..      +-.+.+.+.++..+++.++.
T Consensus       389 ~~Gi~~A~~~siPfal~s~~~~~~-~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~  467 (477)
T TIGR01301       389 ILGIPLAITYSIPFALASIRSSNL-GAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLA  467 (477)
T ss_pred             HhhHHHHHHHHHhHHHHHHHcccc-CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHH
Confidence            999999999999999999999954 01459999999999999999888766654      34567788888888877776


Q ss_pred             Hhh
Q psy13786        216 AMI  218 (219)
Q Consensus       216 ~~~  218 (219)
                      ++.
T Consensus       468 ~~~  470 (477)
T TIGR01301       468 LIL  470 (477)
T ss_pred             HHh
Confidence            654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK09848 glucuronide transporter; Provisional

Probab=98.56  E-value=3e-06  Score=70.10  Aligned_cols=117  Identities=15%  Similarity=0.170  Sum_probs=77.9

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhh----CCchhh-hHhhHHHHHHHHHH-Hhh----hh--HHHHHHHHHHH
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKY----GRKSAL-MITNVPSLCGWLLM-ATK----SD--LINLYISRLLS  143 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~----Grr~~~-~~~~~~~~~~~~~~-~~~----~~--~~~~~~~~~l~  143 (219)
                      |+++.+.|.+.+...+...+..++.|+++||.    ||||.. .++.+...+...+. ...    ++  .....+...+.
T Consensus        40 gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (448)
T PRK09848         40 GVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGL  119 (448)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHH
Confidence            89999999999999999999999999999986    777765 45555444433332 211    11  22233445667


Q ss_pred             hhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHH-----HHHHHHHHHHHhhh
Q psy13786        144 GLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIA-----LTSGILLSYLTGAF  194 (219)
Q Consensus       144 G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-----~~~g~~~~~~~~~~  194 (219)
                      +++.+...+...++..|..++.+  +|.+..+.-..+     ..++..++|.+...
T Consensus       120 ~~~~~~~~~~~~al~~~~~~~~~--~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~  173 (448)
T PRK09848        120 GLCYSLVNIPYGSLATAMTQQPQ--SRARLGAARGIAASLTFVCLAFLIGPSIKNS  173 (448)
T ss_pred             HHHHHHhcccHhhhhhhhcCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77777777777777777765531  688776655433     23455566666543

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.52  E-value=3.5e-06  Score=59.17  Aligned_cols=112  Identities=17%  Similarity=0.168  Sum_probs=90.0

Q ss_pred             ChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhhhh
Q psy13786         78 TIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVY  157 (219)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~  157 (219)
                      ++..-..-.++......+.+++.+.+.+++|.|+.++++.+...+-.... +-++.+.++..-.+.|++.+..++....+
T Consensus        35 ~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~y  113 (156)
T PF05978_consen   35 SAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTY  113 (156)
T ss_pred             cccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHH
Confidence            33333445566677788888888999999999999999998888655443 45667888899999999999999999999


Q ss_pred             hhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhh
Q psy13786        158 AAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGA  193 (219)
Q Consensus       158 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  193 (219)
                      +.+..+++   .|++..++.-.....+.+.|.++..
T Consensus       114 lt~~s~~~---~~~~~~~ifw~i~~~s~i~G~~~~~  146 (156)
T PF05978_consen  114 LTSYSTEE---TIGRNTGIFWAIFQSSLIFGNLFLF  146 (156)
T ss_pred             HHHcCCHH---HHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999   8999999877777777777765544

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG0637|consensus

Probab=98.49  E-value=2e-07  Score=75.00  Aligned_cols=137  Identities=12%  Similarity=0.174  Sum_probs=99.4

Q ss_pred             hhhhhccccccccchhhcccCChhhHHHHHHHHHHHHHHHHhhHhHhhhh----hCCchhhhHh-hHHHHHHHHHHHhhh
Q psy13786         57 GVAPGMSFGFPAVALPQMSYLTIDQASWFASISAITMPIGCLLSGPIIDK----YGRKSALMIT-NVPSLCGWLLMATKS  131 (219)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~Grr~~~~~~-~~~~~~~~~~~~~~~  131 (219)
                      .+......+...|++... |.+....+.+...-.+...+-+|+.|..+||    |||||.++.. ....+++.++..+++
T Consensus        45 qf~wA~elsy~tPyl~~l-Gvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aa  123 (498)
T KOG0637|consen   45 QFGWALELSYLTPYLQSL-GVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAA  123 (498)
T ss_pred             HHHHHHHhccccHHHHHc-CCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHh
Confidence            344444444444444444 9999888888888888999999999999995    8999988875 455556666666644


Q ss_pred             hHH-----------------HHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhh-HHHHHHHHHHHHHHHHHHHhh
Q psy13786        132 DLI-----------------NLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGS-LSTWSTIALTSGILLSYLTGA  193 (219)
Q Consensus       132 ~~~-----------------~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~g~~~~~~~~~  193 (219)
                      ++.                 .++++.-+.=+.....+..+-+++.|....+   ++.+ +++.+.....+|+.+|..++.
T Consensus       124 Dig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d---~~~~~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  124 DIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGD---AKKTRANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             hhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccCh---hhhhccchhHHHHHHhcceeeeeccc
Confidence            322                 3334444445555567788889999999887   6666 999999999999999988887


Q ss_pred             hhhh
Q psy13786        194 FFWY  197 (219)
Q Consensus       194 ~~~w  197 (219)
                      +.+|
T Consensus       201 y~~~  204 (498)
T KOG0637|consen  201 YLGL  204 (498)
T ss_pred             ccCc
Confidence            7644

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.45  E-value=4.6e-06  Score=70.57  Aligned_cols=132  Identities=18%  Similarity=0.152  Sum_probs=94.2

Q ss_pred             hhhhccccccccchhhcc----cCCh---hhHHHHHHHHHHHHHHHHhhHhHhhhhhCCch-hhhHhhHHHHHHHHHHHh
Q psy13786         58 VAPGMSFGFPAVALPQMS----YLTI---DQASWFASISAITMPIGCLLSGPIIDKYGRKS-ALMITNVPSLCGWLLMAT  129 (219)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~-~~~~~~~~~~~~~~~~~~  129 (219)
                      +..++.......+.|+..    +.++   .+.++......++..+++.+.|.+..+++|-| .++++.+++.+++-+++.
T Consensus       320 fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~  399 (599)
T PF06609_consen  320 FISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAA  399 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHH
Confidence            334444333344555543    3333   35778888899999999999999998888754 445676666655444443


Q ss_pred             --hhhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHh
Q psy13786        130 --KSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTG  192 (219)
Q Consensus       130 --~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  192 (219)
                        .+|....+...++.|++.|...........-..|++   +-+++.++......+|+.++.-+.
T Consensus       400 ~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~---~ig~a~gL~~s~R~~GGsIg~aIy  461 (599)
T PF06609_consen  400 VRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDE---DIGTATGLTGSIRSIGGSIGYAIY  461 (599)
T ss_pred             ccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCch---HHHHHHHHHHHHHHHhhHHHHHHH
Confidence              345556677788999999988777777777778888   899999999988888888877664

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.43  E-value=3.9e-08  Score=82.68  Aligned_cols=135  Identities=18%  Similarity=0.125  Sum_probs=3.0

Q ss_pred             hhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhh----
Q psy13786         58 VAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATK----  130 (219)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~----  130 (219)
                      +.+....+.....+.++.   +++..+.|++.+.+-++..+..++..++.+|..|-|.+-++.++++++++++++-    
T Consensus        13 ~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~   92 (539)
T PF03137_consen   13 LFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLS   92 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhc
Confidence            334444555555566665   9999999999999999999999999999999877788888999999998887640    


Q ss_pred             h----------------------------------------------hHHHHHHHHHHHhhhhhcchhhhhhhhhhccCC
Q psy13786        131 S----------------------------------------------DLINLYISRLLSGLSVGLATTPAAVYAAECITI  164 (219)
Q Consensus       131 ~----------------------------------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~  164 (219)
                      .                                              -+..++++.++.|+|....++...+|+-|..++
T Consensus        93 ~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~  172 (539)
T PF03137_consen   93 GPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSK  172 (539)
T ss_dssp             -----------------------------------------------------------SSS------------------
T ss_pred             CCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccc
Confidence            0                                              023677789999999999999999999999999


Q ss_pred             CCccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        165 HNTDLRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       165 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                      +   +-+..+|+......+|..+|..+++..
T Consensus       173 ~---~splYiGi~~~~~~lGPa~Gf~lg~~~  200 (539)
T PF03137_consen  173 K---NSPLYIGILYAMSILGPALGFLLGSFC  200 (539)
T ss_dssp             -------------------------------
T ss_pred             c---cCccchhhhhHHhhccHHHHHHHHHHH
Confidence            9   889999999988888888887777654

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.42  E-value=9.1e-06  Score=64.79  Aligned_cols=114  Identities=14%  Similarity=0.114  Sum_probs=93.1

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAA  155 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~  155 (219)
                      |.+..+.....+.+..+..+|..+..++..|+...|.+....++..+.++...+.++...+ .+-++.|+..+..+|...
T Consensus       268 g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~-~~l~~ig~F~simfPTIf  346 (422)
T COG0738         268 GLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVAL-YALFLIGLFNSIMFPTIF  346 (422)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHH-HHHHHHHHHhHHHHHHHH
Confidence            8889999999999999999999999999999999999999998888888888888885543 446788889999999999


Q ss_pred             hhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        156 VYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       156 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                      +...+..|.+    -..+.+ .-....+|+.+.|.+.+++
T Consensus       347 slal~~l~~~----ts~~s~-~l~maivGGAiiP~l~G~i  381 (422)
T COG0738         347 SLALKNLGEH----TSVGSG-LLVMAIVGGAIIPPLQGVI  381 (422)
T ss_pred             HHHHhccCcc----ccccce-eeeeheecchHHHHHHHHH
Confidence            9999999944    333333 3333456777788888877

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.40  E-value=8.6e-07  Score=55.17  Aligned_cols=76  Identities=21%  Similarity=0.214  Sum_probs=66.4

Q ss_pred             hccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHH
Q psy13786         61 GMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINL  136 (219)
Q Consensus        61 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (219)
                      |.....+.+.+|.+.   ++|.++.+++.+...+|+.+|++...++.++..+++.+..+.+...+..+.+++.++.+.+
T Consensus         5 GigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w   83 (85)
T PF06779_consen    5 GIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW   83 (85)
T ss_pred             hhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence            334455678888887   8999999999999999999999999999999888899999999999999999998887654

Note that many members are hypothetical proteins.

>KOG4686|consensus

Probab=98.40  E-value=7.6e-08  Score=73.18  Aligned_cols=148  Identities=14%  Similarity=0.200  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHhhhhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhh-hCCchhhhHhhHHH
Q psy13786         45 RLIYLGLIVILPGVAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDK-YGRKSALMITNVPS  120 (219)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~  120 (219)
                      +|......+++..+...+..-.......++.   +++.++..++.+.++.-.++-+.++|++.|| +|-|..-++-+++.
T Consensus        41 hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv  120 (459)
T KOG4686|consen   41 HRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFV  120 (459)
T ss_pred             hHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHH
Confidence            3444444444444443333333333333333   6667788889999999999999999999996 67776666555555


Q ss_pred             HHHHHHHHh---hhhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        121 LCGWLLMAT---KSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       121 ~~~~~~~~~---~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                      .++-++++.   .+.+|....+|++.|+|.-......+.|...++..|   +-+.++|+......+|+..--.+.+++
T Consensus       121 ~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGK---ELn~vfGlqlSvAR~GstvNf~lm~~l  195 (459)
T KOG4686|consen  121 FLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGK---ELNFVFGLQLSVARLGSTVNFLLMPFL  195 (459)
T ss_pred             HHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCc---cccchhhHHHHHHHhhceeeeeecHHH
Confidence            666665553   689999999999999998777788889999999999   899999998888888877654444433

>KOG3626|consensus

Probab=98.39  E-value=2.4e-06  Score=73.12  Aligned_cols=168  Identities=16%  Similarity=0.130  Sum_probs=136.0

Q ss_pred             HHHHHHHHhhhhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHH
Q psy13786         48 YLGLIVILPGVAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGW  124 (219)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~  124 (219)
                      ..+.++.+..+.+++...++...+.++.   +++..+.|++.+.+-++..+...+..+..-|..|-|.+-++.++++++.
T Consensus        97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs  176 (735)
T KOG3626|consen   97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS  176 (735)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence            3444555555666666555555555555   8999999999999999999999999999999999899999999999999


Q ss_pred             HHHHhh--------------------h---------------------------h----HH-HHHHHHHHHhhhhhcchh
Q psy13786        125 LLMATK--------------------S---------------------------D----LI-NLYISRLLSGLSVGLATT  152 (219)
Q Consensus       125 ~~~~~~--------------------~---------------------------~----~~-~~~~~~~l~G~~~~~~~~  152 (219)
                      +++++-                    +                           +    ++ .++++.++.|+|....++
T Consensus       177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t  256 (735)
T KOG3626|consen  177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT  256 (735)
T ss_pred             HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence            987741                    0                           0    22 456678999999999999


Q ss_pred             hhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh-----------------------hhHHHHHHHHHHHH
Q psy13786        153 PAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF-----------------------WYTTVAYIGAFVSF  209 (219)
Q Consensus       153 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----------------------~w~~~~~~~~~~~~  209 (219)
                      ...+|+-|...++   +-...+|+......+|-.+|-++++..                       .|+.-|++.+.+.+
T Consensus       257 lGisYiDDnvk~~---~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~  333 (735)
T KOG3626|consen  257 LGISYIDDNVKKK---NSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLL  333 (735)
T ss_pred             CCCcccccccccc---CCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHH
Confidence            9999999999999   899999999999988888888887765                       57677888888877


Q ss_pred             HHHHHHHhh
Q psy13786        210 LSLVLVAMI  218 (219)
Q Consensus       210 ~~~~~~~~~  218 (219)
                      +..+.++++
T Consensus       334 ~~a~p~f~f  342 (735)
T KOG3626|consen  334 FSAVPLFFF  342 (735)
T ss_pred             HHHHHHHhC
Confidence            777766654

>KOG2615|consensus

Probab=98.34  E-value=4e-06  Score=66.36  Aligned_cols=117  Identities=17%  Similarity=0.140  Sum_probs=99.8

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhC--CchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYG--RKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTP  153 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~G--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~  153 (219)
                      |+++.|.|.+.+...+.+.+.+....+..||..  -+-.+..+..+..-..++.+.+.....+.++..+-.+..+..-+-
T Consensus       293 g~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~vt~  372 (451)
T KOG2615|consen  293 GYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVVTC  372 (451)
T ss_pred             CCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhhHH
Confidence            899999999999999999998888888888876  566666666666666666777888888888888888887777777


Q ss_pred             hhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        154 AAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       154 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                      ...++....|.+   +||..+|+......++-.+||.+++..
T Consensus       373 Lt~Lv~~~~~~~---qrG~~~Gi~~Sl~alaRaiGPlv~g~i  411 (451)
T KOG2615|consen  373 LTSLVHKYGPQS---QRGTLNGIFRSLGALARAIGPLVSGVI  411 (451)
T ss_pred             HHHHHHhcCCcc---cchHHHHHHHHHHHHHHHhhhhhhhee
Confidence            788888899999   999999999999999999999999776

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.33  E-value=6.7e-05  Score=61.47  Aligned_cols=129  Identities=12%  Similarity=0.049  Sum_probs=80.0

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHH-----hhhhHHHHHHHHHHHhhhhhcc
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMA-----TKSDLINLYISRLLSGLSVGLA  150 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~G~~~~~~  150 (219)
                      |.++.+.++.......+..++..+.+++.++.++++.......+..++..+..     ..++++..++..++.++|.+..
T Consensus       250 g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~  329 (413)
T PRK15403        250 GMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLI  329 (413)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHH
Confidence            88999999998888888888888888876544444443222222222222222     1233434566778888888877


Q ss_pred             hhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHH
Q psy13786        151 TTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF---WYTTVAYIGAFVS  208 (219)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~w~~~~~~~~~~~  208 (219)
                      .+......- .....   .+|++.++.+.....+...++..++++   +-++.+....+.+
T Consensus       330 ~p~~~~~al-~~~~~---~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  386 (413)
T PRK15403        330 FPTLFRFTL-FSNNL---PKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVVA  386 (413)
T ss_pred             hHHHHHHHh-ccCCC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence            766664332 22333   578888888888877777777777766   3344444444333

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.31  E-value=2.3e-06  Score=52.64  Aligned_cols=55  Identities=20%  Similarity=0.272  Sum_probs=45.8

Q ss_pred             cccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHH
Q psy13786         65 GFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVP  119 (219)
Q Consensus        65 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~  119 (219)
                      +...|++|.+.   |+++.++|.+.++..+...++++++|.++||+++++.+......
T Consensus        17 g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen   17 GCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            33345555555   99999999999999999999999999999999999988765443

>KOG2533|consensus

Probab=98.25  E-value=4e-06  Score=69.73  Aligned_cols=153  Identities=12%  Similarity=-0.046  Sum_probs=94.7

Q ss_pred             HHHHHhhhhhhccccccccchhhcc----cCChhhHHHHHHHHHHHHHHHHhhHhHhhhh----hCCchhhhHhhHHHHH
Q psy13786         51 LIVILPGVAPGMSFGFPAVALPQMS----YLTIDQASWFASISAITMPIGCLLSGPIIDK----YGRKSALMITNVPSLC  122 (219)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~Grr~~~~~~~~~~~~  122 (219)
                      ....++.++.....+....++|.+.    |++..+.+.+.+.+.++.+++.+++|+++||    ..+|........+...
T Consensus       276 w~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~  355 (495)
T KOG2533|consen  276 WPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAI  355 (495)
T ss_pred             HHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            3334444555555555566666666    5889999999999999999999999999999    5666666655544443


Q ss_pred             HH-HHHHhhhhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh-----h
Q psy13786        123 GW-LLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF-----W  196 (219)
Q Consensus       123 ~~-~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~  196 (219)
                      .. .......+........+..+.+.....+......++....+.  +|-+..+++..+.+.++..+|.+-...     .
T Consensus       356 ~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~--k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~  433 (495)
T KOG2533|consen  356 IGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT--KALTTVSAIIDGTGSAGAISGQLFRSLDAPRYG  433 (495)
T ss_pred             HHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchH--HhHHHHhhhhcchhHHHHhhhhhcccccCcchh
Confidence            33 333333333333333334444445555666777777776651  344444466777777766666554433     5


Q ss_pred             hHHHHHHHH
Q psy13786        197 YTTVAYIGA  205 (219)
Q Consensus       197 w~~~~~~~~  205 (219)
                      |...|....
T Consensus       434 ~~~~f~~~~  442 (495)
T KOG2533|consen  434 WGAVFYMLV  442 (495)
T ss_pred             hhhHHHHHH
Confidence            666664433

>TIGR01272 gluP glucose/galactose transporter

Probab=98.22  E-value=1.3e-05  Score=63.15  Aligned_cols=84  Identities=12%  Similarity=-0.002  Sum_probs=72.0

Q ss_pred             HhhhhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh------------
Q psy13786        128 ATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF------------  195 (219)
Q Consensus       128 ~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~------------  195 (219)
                      +...++..+++..++.|.|.+...+..++++++..|++   ++++.+++.+.++++|.+++|.+++.+            
T Consensus         5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~---~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~   81 (310)
T TIGR01272         5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIE---TAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV   81 (310)
T ss_pred             HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcc---hHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence            34678999999999999999999999999999999999   899999999999999999999999854            


Q ss_pred             --------hhHHHHHHHHHHHHHHHHH
Q psy13786        196 --------WYTTVAYIGAFVSFLSLVL  214 (219)
Q Consensus       196 --------~w~~~~~~~~~~~~~~~~~  214 (219)
                              +|++++++.+.+.++..+.
T Consensus        82 ~~~~~~~~~~~~~yl~ia~~~~~~~i~  108 (310)
T TIGR01272        82 ATANAEAAKVHTPYLLLAGALAVLAII  108 (310)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    3788888666554444443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.21  E-value=0.00029  Score=57.04  Aligned_cols=138  Identities=15%  Similarity=0.228  Sum_probs=108.3

Q ss_pred             cCChhhHH-HHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhh
Q psy13786         76 YLTIDQAS-WFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPA  154 (219)
Q Consensus        76 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~  154 (219)
                      |++..|.. -+.-...-.+.+..++...+.|..+.|++++++.+...+...+..+.++...+-+..++.|++.+. ..+.
T Consensus        36 n~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-evay  114 (412)
T PF01770_consen   36 NFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EVAY  114 (412)
T ss_pred             CCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHHH
Confidence            67776654 344455556677778889999999999999999999999999999999999999999999998764 6777


Q ss_pred             hhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh------hhHHHHHHHHHHHHHHHHHHHh
Q psy13786        155 AVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF------WYTTVAYIGAFVSFLSLVLVAM  217 (219)
Q Consensus       155 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~------~w~~~~~~~~~~~~~~~~~~~~  217 (219)
                      ++|+-...|++   +-.++.+....+.-+|.+++..++..+      +++...++......++++..++
T Consensus       115 ~sYiys~v~~~---~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~f  180 (412)
T PF01770_consen  115 YSYIYSVVDKE---HYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALF  180 (412)
T ss_pred             HHHheeecCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            88998888998   888889888888888888887777766      5666656555544444444433

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG2816|consensus

Probab=98.19  E-value=7.9e-05  Score=61.68  Aligned_cols=116  Identities=14%  Similarity=0.063  Sum_probs=103.1

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHh-HhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSG-PIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPA  154 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~  154 (219)
                      ++++.+.+...+.......+++.+.. .+...+|-|+.+..|.....+.....+++++.|+.+....+.++. ....+..
T Consensus       273 ~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~-~~~~pa~  351 (463)
T KOG2816|consen  273 GWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA-GIVFPAI  351 (463)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh-cchhHHH
Confidence            99999999999999988888887766 778889999999999999999999999999999988888777765 4567888


Q ss_pred             hhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        155 AVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       155 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                      .+..+.+..++   ++|+..++......+...++|.+-+.+
T Consensus       352 ~s~~s~~v~~~---e~g~v~~~is~i~~l~~~~~~~~~~~i  389 (463)
T KOG2816|consen  352 RAFASILVSPE---EQGKVFGIISGIEGLSGVVSPALYGNI  389 (463)
T ss_pred             HhHHHhhcccc---cccchhhHHHHHHHHhhhhhHHHHHHH
Confidence            99999999999   999999999999999999998887766

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.18  E-value=0.00016  Score=60.34  Aligned_cols=111  Identities=11%  Similarity=0.063  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHHHHhhHhHhhhhhCC--ch-----hhhHhhHHHHHHHHHHHhh---------hhHHHHHHHHHHHhh
Q psy13786         82 ASWFASISAITMPIGCLLSGPIIDKYGR--KS-----ALMITNVPSLCGWLLMATK---------SDLINLYISRLLSGL  145 (219)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~g~l~d~~Gr--r~-----~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~G~  145 (219)
                      .+|.++...+..++.+|+.+++-.|.+|  |.     =+.++.++.+++.+....+         .+.+.+++.-++.++
T Consensus       310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~  389 (493)
T PRK15462        310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGF  389 (493)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence            5788889999888899988888777633  21     1567777777777665431         256667888899999


Q ss_pred             hhhcchhhhhhhhhhccCCCCccchhhHHHHHHHH-HHHHHHHHHHHhhhh
Q psy13786        146 SVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIA-LTSGILLSYLTGAFF  195 (219)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~~~  195 (219)
                      |.-...|+..+.+++..|++   .||..+|.+... ..+|..++..++...
T Consensus       390 gEl~~sPvgls~~~~laP~~---~~g~~mg~w~l~~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        390 AELFIDPVAMSQITRIEIPG---VTGVLTGIYMLLSGAIANYLAGVIADQT  437 (493)
T ss_pred             HHHHHChHHHHHHHHhChHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999   999999988663 367777666655433

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.17  E-value=2.5e-05  Score=64.43  Aligned_cols=138  Identities=20%  Similarity=0.198  Sum_probs=102.8

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhC-----CchhhhHhhHHHHHHHHHHHhh----hhHHHHHHHHHHHhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYG-----RKSALMITNVPSLCGWLLMATK----SDLINLYISRLLSGLS  146 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~G-----rr~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~G~~  146 (219)
                      |+++++.....+...+...+ .++.|.++|.+.     ||+.++++.++..++....+..    .+.....+..++..++
T Consensus        21 ~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g   99 (433)
T PF03092_consen   21 GLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFG   99 (433)
T ss_pred             CCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHH
Confidence            99999988888887777654 578999999863     4555566776665555555542    3456666677888888


Q ss_pred             hhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHH
Q psy13786        147 VGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLV  215 (219)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~  215 (219)
                      .........+++.|....+.. .||...+....+..+|++++..+.+.+    +++..|.+.+++..+..+..
T Consensus       100 ~a~~DV~aDa~vvE~~~~~p~-~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~  171 (433)
T PF03092_consen  100 YAFADVAADALVVELARREPE-SRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVA  171 (433)
T ss_pred             HHHHHHhhhHHHHHHhhcCCc-hhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHH
Confidence            888999999999999855421 377888888888899999998888877    77777877776666655443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=98.12  E-value=3.3e-05  Score=62.38  Aligned_cols=106  Identities=18%  Similarity=0.233  Sum_probs=84.8

Q ss_pred             hhhhHhhHHHHHHHHHHHhhh---------hHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHH
Q psy13786        111 SALMITNVPSLCGWLLMATKS---------DLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIAL  181 (219)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  181 (219)
                      |++.++.+++.++.++...+.         +...++++..+.++|.|+.-+...++.+|.+++++..+|.+...++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            567788888888888854431         23578888999999999999999999999998763336778888999999


Q ss_pred             HHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHH
Q psy13786        182 TSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       182 ~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~  216 (219)
                      ++|..+++.+..++    +|.+.|.+.++..+++++.++
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~  120 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFL  120 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHH
Confidence            99999999988888    899999998888777766554

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.06  E-value=0.0004  Score=57.96  Aligned_cols=132  Identities=14%  Similarity=0.073  Sum_probs=91.1

Q ss_pred             hHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhh-HHHHHHHHHHHhh--hhHHHHHHHHHHHhhhhhcchhhhhhh
Q psy13786         81 QASWFASISAITMPIGCLLSGPIIDKYGRKSALMITN-VPSLCGWLLMATK--SDLINLYISRLLSGLSVGLATTPAAVY  157 (219)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~l~G~~~~~~~~~~~~~  157 (219)
                      ..++..++..+...+..|+.|.++|+-|+||.++... .+..+++.++.+.  ++++...+..++.-++.+......+++
T Consensus        71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~  150 (477)
T PF11700_consen   71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAY  150 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467788888999999999999999999888776544 3444455555552  334444445556666777778888999


Q ss_pred             hhhccCCCCccch--------------------------hhHHHHHHHHHHHHHHHHHHHhhhh------------hhHH
Q psy13786        158 AAECITIHNTDLR--------------------------GSLSTWSTIALTSGILLSYLTGAFF------------WYTT  199 (219)
Q Consensus       158 ~~~~~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~~~~~~~~~------------~w~~  199 (219)
                      +.|+.+++   .+                          ++..+.-.....+|+.+.-.+...+            +.|.
T Consensus       151 LP~la~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~  227 (477)
T PF11700_consen  151 LPDLARPE---PRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRV  227 (477)
T ss_pred             hHhhcCCC---hhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhH
Confidence            99999998   77                          7887777777777777665554443            2466


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy13786        200 VAYIGAFVSFLSLVLV  215 (219)
Q Consensus       200 ~~~~~~~~~~~~~~~~  215 (219)
                      .+.+.++.-++..+..
T Consensus       228 ~~~~~a~ww~vfsiP~  243 (477)
T PF11700_consen  228 AFLIVALWWLVFSIPL  243 (477)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7777666655544443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.00  E-value=0.00017  Score=58.28  Aligned_cols=113  Identities=19%  Similarity=0.128  Sum_probs=81.7

Q ss_pred             ChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHH---hhhhHHHHHHHHHHHhhhhhcchhhh
Q psy13786         78 TIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMA---TKSDLINLYISRLLSGLSVGLATTPA  154 (219)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~G~~~~~~~~~~  154 (219)
                      ..++..+....+.+|-.++.--...+  |+.|.+.+.+-.++..+..++.+   +.++.+.+++.-+.-|+..|..+...
T Consensus       279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNt  356 (402)
T PF02487_consen  279 PRDQYRWYQLLYQLGVFISRSSLPFF--RIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNT  356 (402)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcceeee--ehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHH
Confidence            35677888888988877776543222  33222222222233333333322   35788888888999999999999999


Q ss_pred             hhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        155 AVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       155 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                      ...+.|..|++   +|...++....+-..|..++.+++-.+
T Consensus       357 F~~I~~~~~~~---~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  357 FYRISEEVPPE---DREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHhcCCHH---HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            99999999999   999999999999999999998887655

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.00  E-value=0.00062  Score=54.81  Aligned_cols=116  Identities=15%  Similarity=0.068  Sum_probs=86.5

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhC-----CchhhhH-hhHHHHHHHHHHHh-----hh--------hH-H-
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYG-----RKSALMI-TNVPSLCGWLLMAT-----KS--------DL-I-  134 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~G-----rr~~~~~-~~~~~~~~~~~~~~-----~~--------~~-~-  134 (219)
                      +++..-.+...+...+.+. ..+.+|+.+|+.+     ||..+++ +......+..+..+     ..        .+ + 
T Consensus        11 ~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~   89 (403)
T PF03209_consen   11 GVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGL   89 (403)
T ss_pred             ccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHH
Confidence            5555556666666655554 5789999999998     8877766 44444444444333     12        22 2 


Q ss_pred             -HHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        135 -NLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       135 -~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                       ...+...+.|++.+...+...+++.|..|++   +|++..++.....-+|..++..+.+.+
T Consensus        90 ~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~---~R~~~v~ivw~Mli~G~iv~ai~~g~l  148 (403)
T PF03209_consen   90 ALAALAFLLYGLGVHASGTSFLALLADLAPEE---RRPRVVAIVWVMLIVGIIVSAIVFGRL  148 (403)
T ss_pred             HHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHh---hhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence             3344678899999999999999999999999   999999999888889999998888876

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PTZ00207 hypothetical protein; Provisional

Probab=97.99  E-value=0.00037  Score=59.42  Aligned_cols=127  Identities=10%  Similarity=0.088  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHhhHhHhhhhhCCc--------hh-hhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhh
Q psy13786         85 FASISAITMPIGCLLSGPIIDKYGRK--------SA-LMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAA  155 (219)
Q Consensus        85 ~~~~~~~~~~~~~~~~g~l~d~~Grr--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~  155 (219)
                      ..+..++++.+|.+..|+++...-+|        +. +.+..+ +.++.+++.+......+++.-++.|++.|..++...
T Consensus       396 ~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~  474 (591)
T PTZ00207        396 LTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIA  474 (591)
T ss_pred             ehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHH
Confidence            78999999999999999887222111        12 222333 555555555554436889999999999999999999


Q ss_pred             hhhhhccCCCCccchhhHHHHHHHHHHHHHHHH-HHHhhhh-----------------hhHHHHHHHHHHHHHHHHHHH
Q psy13786        156 VYAAECITIHNTDLRGSLSTWSTIALTSGILLS-YLTGAFF-----------------WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       156 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~-~~~~~~~-----------------~w~~~~~~~~~~~~~~~~~~~  216 (219)
                      ...+|+|. |   +-|+-..+...+..+|+.+- ..+.+..                 =++.+|++.+.+++.+.+...
T Consensus       475 ~i~selFg-k---~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~  549 (591)
T PTZ00207        475 LVTRTIFA-K---DPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITST  549 (591)
T ss_pred             HHHHHHhc-c---chHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHh
Confidence            99999999 7   78888888888888887764 3444433                 257888888888888877654

>KOG0255|consensus

Probab=97.95  E-value=0.00031  Score=59.35  Aligned_cols=101  Identities=22%  Similarity=0.255  Sum_probs=80.8

Q ss_pred             HHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHH---HHHHHHHHHhhhhhcchhhhhhhhhhccCCCCcc
Q psy13786         92 TMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLI---NLYISRLLSGLSVGLATTPAAVYAAECITIHNTD  168 (219)
Q Consensus        92 ~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~  168 (219)
                      .........+.+.|++|||.....+..+..++.+..+......   ...+...+..++.+..+.....+..|.+|+.   
T Consensus       362 ~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~---  438 (521)
T KOG0255|consen  362 VELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTV---  438 (521)
T ss_pred             HHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH---
Confidence            4445555567889999999999999999999999988865433   2444455555555666667799999999999   


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        169 LRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       169 ~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                      .|+.+.+..+....+|+.++|.+....
T Consensus       439 ~r~~~~~~~~~~~~~~~i~ap~~~~~~  465 (521)
T KOG0255|consen  439 VRNTAVGAISAAARLGSILAPLFPLLL  465 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999887655

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.80  E-value=0.0028  Score=52.67  Aligned_cols=115  Identities=12%  Similarity=0.112  Sum_probs=85.0

Q ss_pred             ChhhHHHHHHHHHHHHHHH-HhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhh----h---------------------
Q psy13786         78 TIDQASWFASISAITMPIG-CLLSGPIIDKYGRKSALMITNVPSLCGWLLMATK----S---------------------  131 (219)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~-~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~----~---------------------  131 (219)
                      +.+...++-+...+...+. .++.+++++|++|++.+.+..........++++.    +                     
T Consensus        41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~  120 (472)
T TIGR00769        41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM  120 (472)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence            3467888888777776666 8899999999999999988777777766665543    0                     


Q ss_pred             ------hHHHHHHHHHHHhhhhhcchh-hhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        132 ------DLINLYISRLLSGLSVGLATT-PAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       132 ------~~~~~~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                            +.|...+.-....+......+ ..+.+++|.++.+   +-.|..++...+.++|..+++.+..++
T Consensus       121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~---qakRfy~l~~~ganlg~i~sg~~~~~~  188 (472)
T TIGR00769       121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTID---EAKRFYALFGLGANVALIFSGRTIKYF  188 (472)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  122222233334444444444 7789999999999   888999999999999999999887765

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.66  E-value=0.0021  Score=52.81  Aligned_cols=117  Identities=15%  Similarity=0.035  Sum_probs=88.1

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHh---h---h----hHHHHHHHHHHHhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMAT---K---S----DLINLYISRLLSGL  145 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~---~---~----~~~~~~~~~~l~G~  145 (219)
                      |+++...|..-+...+..+.+...+.++.+|+|..|.=.++...-..+..++..   .   +    +...++.+-.+.=+
T Consensus       289 G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~  368 (432)
T PF06963_consen  289 GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRI  368 (432)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998888876655544443332   1   1    22334444444445


Q ss_pred             hhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        146 SVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                      |.=++.-...-++.|..|++   +||...|..+...++--++...+.-..
T Consensus       369 GLW~fDL~~~qi~Qe~V~~~---~Rg~v~gvq~sl~~lf~ll~~~~~ii~  415 (432)
T PF06963_consen  369 GLWSFDLAVTQIMQENVPES---ERGAVSGVQNSLQSLFELLSFVLTIIF  415 (432)
T ss_pred             HHHhhhHHHHHhhcccCCHH---HhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            55456667777889999999   999999999998888887776665544

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG1237|consensus

Probab=97.50  E-value=0.0057  Score=52.23  Aligned_cols=141  Identities=18%  Similarity=0.110  Sum_probs=106.2

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhh-hCCchhhhHhhHHHHHHHHHHHhhhh----------------------
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDK-YGRKSALMITNVPSLCGWLLMATKSD----------------------  132 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~~~~~~~~~~~~----------------------  132 (219)
                      +.+...+.-..+.+.-......+.+++++|. +||-+++.++.++..++..+......                      
T Consensus        69 ~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s  148 (571)
T KOG1237|consen   69 HASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPS  148 (571)
T ss_pred             ccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcc
Confidence            6667777777888888888888999999996 58999999998888888665543211                      


Q ss_pred             ---HHHHHHHHHHHhhhhhcchhhhhhhhhhccCC---CCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHH
Q psy13786        133 ---LINLYISRLLSGLSVGLATTPAAVYAAECITI---HNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAY  202 (219)
Q Consensus       133 ---~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~---~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~  202 (219)
                         ...+....-+..+|.|+.-+...++-+|.++.   ++...+...+.++....+.|.+++..+..+.    +|.+.|.
T Consensus       149 ~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~  228 (571)
T KOG1237|consen  149 KLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFG  228 (571)
T ss_pred             hHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeecc
Confidence               12455666778889999999999999999983   2112334677788888899998887777666    8999888


Q ss_pred             HHHHHHHHHHHHHH
Q psy13786        203 IGAFVSFLSLVLVA  216 (219)
Q Consensus       203 ~~~~~~~~~~~~~~  216 (219)
                      +..+..+++.++++
T Consensus       229 i~~~~~~lai~iF~  242 (571)
T KOG1237|consen  229 IPTVLNALAILIFL  242 (571)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88777766665543

>PRK03612 spermidine synthase; Provisional

Probab=97.47  E-value=0.018  Score=48.78  Aligned_cols=115  Identities=20%  Similarity=0.132  Sum_probs=64.0

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHH---HHH-HHHH---hhhhH-HHHHHHHHHHhhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSL---CGW-LLMA---TKSDL-INLYISRLLSGLSV  147 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~---~~~-~~~~---~~~~~-~~~~~~~~l~G~~~  147 (219)
                      |.+....+.+.+++..|..+|+.+++++.++.-|+.. .+-..+..   ++. ++..   ..... ..+....++.++..
T Consensus        46 G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~  124 (521)
T PRK03612         46 GDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLI  124 (521)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888999999999999999998888644322221 11111111   111 1111   11111 12233345667777


Q ss_pred             hcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        148 GLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                      |...|....+..+....    +-+...|-......+|+.+|.++.+++
T Consensus       125 G~~~Pl~~~~~~~~~~~----~~g~~~g~ly~~ntlGa~~G~l~~~~v  168 (521)
T PRK03612        125 GMEIPLLMRILQRIRDQ----HLGHNVATVLAADYLGALVGGLAFPFL  168 (521)
T ss_pred             HHHHHHHHHHHHhcccc----chhhhhhhhHhHHhHHHHHHHHHHHHH
Confidence            77777766655543321    134455656666666666666666655

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.39  E-value=0.012  Score=48.64  Aligned_cols=129  Identities=12%  Similarity=0.141  Sum_probs=95.4

Q ss_pred             hHHHHHHHHHHHHHHHHhhHhHhhhhhCCc-------hhhhHhhHHHHHHHHHHHhh----------hhHHHHHHHHHHH
Q psy13786         81 QASWFASISAITMPIGCLLSGPIIDKYGRK-------SALMITNVPSLCGWLLMATK----------SDLINLYISRLLS  143 (219)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr-------~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~  143 (219)
                      ..++.++...+.-++.+++..++--|.++|       .-+-++.++.+.+.++....          .+.+.++..-+++
T Consensus       325 p~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~  404 (498)
T COG3104         325 PPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQ  404 (498)
T ss_pred             CHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHH
Confidence            356888888888888998888888775544       12334555555555554432          3567888889999


Q ss_pred             hhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhh-------h---hhHHHHHHHHHHHHHHH
Q psy13786        144 GLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAF-------F---WYTTVAYIGAFVSFLSL  212 (219)
Q Consensus       144 G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~-------~---~w~~~~~~~~~~~~~~~  212 (219)
                      ++|.=...|+...++....|++   ..+..++++-.....|+.++..+...       .   .....|+..+...++..
T Consensus       405 s~gEL~iSpvGLs~~t~laP~~---~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~  480 (498)
T COG3104         405 SFGELFISPVGLSMVTKLAPPA---LKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIG  480 (498)
T ss_pred             HHHHHHhCHHHHHHHHHhChHH---HHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence            9999999999999999999999   99999999999999999888877772       2   33445555555444443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.36  E-value=0.003  Score=51.15  Aligned_cols=93  Identities=12%  Similarity=0.109  Sum_probs=67.4

Q ss_pred             hHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHh-hHHHHHHHHHHHhhhh--H-HHHHHHHHHHhhhhhcchhhhhh
Q psy13786         81 QASWFASISAITMPIGCLLSGPIIDKYGRKSALMIT-NVPSLCGWLLMATKSD--L-INLYISRLLSGLSVGLATTPAAV  156 (219)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~-~~~~~~~~~~~~~~~~--~-~~~~~~~~l~G~~~~~~~~~~~~  156 (219)
                      ..+...++..+...+-+|+.|.++|..|+||..... ..+..++..+..+.++  . +..++...+..++.........+
T Consensus        59 ~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds  138 (438)
T COG2270          59 YWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDS  138 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhh
Confidence            456677888888888999999999999988776654 4444455555555544  4 44455667888888888888899


Q ss_pred             hhhhccCCCCccchhhHHHH
Q psy13786        157 YAAECITIHNTDLRGSLSTW  176 (219)
Q Consensus       157 ~~~~~~~~~~~~~r~~~~~~  176 (219)
                      ++.+..+++   +-++..+.
T Consensus       139 ~L~~~~~k~---~~~riS~l  155 (438)
T COG2270         139 MLPRLTTKD---NMGRISGL  155 (438)
T ss_pred             HhhhhcCcc---ccCccccc
Confidence            999999997   55544443

>KOG4332|consensus

Probab=97.30  E-value=0.00095  Score=51.01  Aligned_cols=86  Identities=16%  Similarity=0.153  Sum_probs=65.2

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAA  155 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~  155 (219)
                      |+...+++.+...-.-...+.+.+.|-+.||-|||+.-+.-++.+.++++ .-.++.+-.++++|.+.|+..+..+....
T Consensus        68 gFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsLLFSaFE  146 (454)
T KOG4332|consen   68 GFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSLLFSAFE  146 (454)
T ss_pred             CccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHHHHHHHH
Confidence            77788888777666666777788889999999999977665555555443 23467888999999999999988888777


Q ss_pred             hh-hhhcc
Q psy13786        156 VY-AAECI  162 (219)
Q Consensus       156 ~~-~~~~~  162 (219)
                      ++ +.|..
T Consensus       147 sWliaEHn  154 (454)
T KOG4332|consen  147 SWLIAEHN  154 (454)
T ss_pred             HHHHHHhh
Confidence            65 44443

>KOG1330|consensus

Probab=97.15  E-value=0.0034  Score=51.40  Aligned_cols=117  Identities=15%  Similarity=0.103  Sum_probs=69.3

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCC-------chhhhHhhHHHHHHH----HHHHh-hhhHHHHHHHHHHH
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGR-------KSALMITNVPSLCGW----LLMAT-KSDLINLYISRLLS  143 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Gr-------r~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~l~  143 (219)
                      |.+..+..+...+...+..+|.+.+|.++||+-|       .+.=.....+.+...    .+... ..+...+.+..++.
T Consensus       279 ~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~  358 (493)
T KOG1330|consen  279 GFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLV  358 (493)
T ss_pred             CCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            6677777778888889999999999999999432       111111111111111    11111 22222333344555


Q ss_pred             hhhhhc-chhhhhhhhhhccCCCCccchhhHHHHHHHHHHH-HHHHHHHHhhhh
Q psy13786        144 GLSVGL-ATTPAAVYAAECITIHNTDLRGSLSTWSTIALTS-GILLSYLTGAFF  195 (219)
Q Consensus       144 G~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~  195 (219)
                      |..... ..........|+.|++   +|.++.++......+ |..-+|.+.+.+
T Consensus       359 g~~~~~~~~a~n~~i~l~vV~p~---~Rt~a~a~~~~~~h~fgd~~~p~ivGil  409 (493)
T KOG1330|consen  359 GETISWFNWATNNPIFLEVVPPS---RRTTAYALDTVFEHIFGDAASPYIVGIL  409 (493)
T ss_pred             HHHHHhcccccccceeeEecCcc---cccHHHHHHHHHHHHhccCCCcceehhH
Confidence            554333 3455566788999999   999999987665544 555555455555

>KOG3098|consensus

Probab=97.08  E-value=0.0054  Score=50.67  Aligned_cols=107  Identities=19%  Similarity=0.092  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCC
Q psy13786         85 FASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITI  164 (219)
Q Consensus        85 ~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~  164 (219)
                      .+++......+.+++.+.+.|+.|.|..++++..++....+.+-+.+ -+-++....+.|+|.+..+...-.|++|..++
T Consensus        55 ~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N-~y~~yfssallG~Gaallw~GqG~ylt~~st~  133 (461)
T KOG3098|consen   55 GQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPN-SYYLYFSSALLGFGAALLWTGQGGYLTSNSTR  133 (461)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcc-hHHHHHHHHHhhhhHHheecccceehhhcCCh
Confidence            37778888889999999999999999999999999887776665544 55678889999999999999999999999999


Q ss_pred             CCccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        165 HNTDLRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       165 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                      +   .+.+..++.-.....+.++|..+....
T Consensus       134 ~---tie~Nisi~Wai~~~~li~Ggi~l~~~  161 (461)
T KOG3098|consen  134 E---TIERNISIFWAIGQSSLIIGGIILFIY  161 (461)
T ss_pred             h---hHHHHHHHHHHHHHHHHHhhhHhheee
Confidence            9   888888877777777777775554433

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=97.05  E-value=0.031  Score=46.28  Aligned_cols=108  Identities=17%  Similarity=0.068  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHHHHhhHhHhhhhhCCc--hhhhHhh--HHHHHHHHHHHhh---------hhHHHHHHHHHHHhhhhh
Q psy13786         82 ASWFASISAITMPIGCLLSGPIIDKYGRK--SALMITN--VPSLCGWLLMATK---------SDLINLYISRLLSGLSVG  148 (219)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~g~l~d~~Grr--~~~~~~~--~~~~~~~~~~~~~---------~~~~~~~~~~~l~G~~~~  148 (219)
                      .-.....++++=.+|..+..+.. .-++|  .+++.+.  ++.....+++...         ++-+..++..++.|+..|
T Consensus       309 ~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnG  387 (437)
T TIGR00939       309 PIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNG  387 (437)
T ss_pred             HHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhh
Confidence            34566777888888887554331 11222  3322221  1222222233221         355666777999999999


Q ss_pred             cchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhh
Q psy13786        149 LATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGA  193 (219)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  193 (219)
                      ...+....+..+..+++   +|..+..+...+..+|..+|..++.
T Consensus       388 y~~s~~m~~~p~~v~~~---e~e~aG~~~~~~l~~Gl~~Gs~l~~  429 (437)
T TIGR00939       388 YLGSLSMCLAPRQVDPH---EREVAGALMVIFLLVGLALGAVLSF  429 (437)
T ss_pred             HHHHHHHHhcCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888   8988888888888888888876644

>KOG3574|consensus

Probab=97.02  E-value=0.028  Score=45.24  Aligned_cols=133  Identities=18%  Similarity=0.203  Sum_probs=83.8

Q ss_pred             Hhhhhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhh-----hhCCchhhhH-hhHHHHHHHH
Q psy13786         55 LPGVAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIID-----KYGRKSALMI-TNVPSLCGWL  125 (219)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----~~Grr~~~~~-~~~~~~~~~~  125 (219)
                      +.+..+|.-.+... .+|.+.   |.|-++.+....++  .-.--.+++.++.|     |+||||..++ +..+.+..+.
T Consensus        38 ~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay--~P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~ml  114 (510)
T KOG3574|consen   38 FLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAY--WPFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFML  114 (510)
T ss_pred             HHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhh--hHHHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHH
Confidence            44556666666655 666665   66666655443221  11123567888888     9999997665 3344444444


Q ss_pred             HHHh-----------hhhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhh
Q psy13786        126 LMAT-----------KSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGA  193 (219)
Q Consensus       126 ~~~~-----------~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  193 (219)
                      +.+.           .++...+....++.-+..+.-..++-.+.-.+..++   +-|.+...+..+...|.+++..+.-
T Consensus       115 lLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e---~lgyaST~q~Vg~~~GyfL~~~ifL  190 (510)
T KOG3574|consen  115 LLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRE---NLGYASTCQSVGQTAGYFLGNVVFL  190 (510)
T ss_pred             HHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHh---hcCchhHHHHHHHhhhHHhhcceee
Confidence            4443           123333444556666666666777778888888888   8888888888888888877765543

>KOG3098|consensus

Probab=96.79  E-value=0.15  Score=42.32  Aligned_cols=107  Identities=17%  Similarity=0.143  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHHHhhHhHhhh---hhCCchhhhHhhHHHHHHHHHHHhh------------------hhHHHHHHHHH
Q psy13786         83 SWFASISAITMPIGCLLSGPIID---KYGRKSALMITNVPSLCGWLLMATK------------------SDLINLYISRL  141 (219)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~g~l~d---~~Grr~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~  141 (219)
                      +.......++..+++...+.+++   ++||++.+.++.++..+.+++.-..                  +++....+.-+
T Consensus       282 ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~  361 (461)
T KOG3098|consen  282 AIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGF  361 (461)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHH
Confidence            33344456667777777777765   5899999999988888887775541                  24556777789


Q ss_pred             HHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhh
Q psy13786        142 LSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGA  193 (219)
Q Consensus       142 l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  193 (219)
                      +.|++-+...+..+.++.+..|.    +|..+.++.-.-..+++.++-....
T Consensus       362 l~G~~D~~~~t~~~~ii~~~~~~----~~~~~fsi~kfyq~~~s~v~~f~~~  409 (461)
T KOG3098|consen  362 LLGFGDACFNTQRYVIIALLYPD----DRAQAFSLFKFYQSVASCVAFFFSP  409 (461)
T ss_pred             HHhhHHHHHHHHHHHHHHHHhcC----chHHHHHHHHHHHHHHHHHHhhhhh
Confidence            99999999999999999999955    4888888776666666655444433

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=96.60  E-value=0.021  Score=47.33  Aligned_cols=117  Identities=17%  Similarity=0.137  Sum_probs=83.8

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHh-h---------hhHHHHHHHHHHHhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMAT-K---------SDLINLYISRLLSGL  145 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~l~G~  145 (219)
                      |+++...+.+..+..++..+|..+..+..-+..-|+++.++.++..+..+.-.. .         ++.+..+.--++..+
T Consensus       251 ~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~  330 (433)
T PF03092_consen  251 HFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEV  330 (433)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHH
Confidence            388988999998888999999999888777778888888877766655443221 1         111222223345555


Q ss_pred             hhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        146 SVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                      .....+-....+.+|.+|+.   .-|+..++.....++|..++..++..+
T Consensus       331 ~~~i~~mP~lvl~a~lcP~G---~Egt~yall~s~~Nlg~~~s~~lg~~l  377 (433)
T PF03092_consen  331 IGMIAFMPSLVLAARLCPKG---SEGTVYALLASFSNLGSSVSSTLGAFL  377 (433)
T ss_pred             HHHHHHHHHHHHHHHHCCCC---chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555566677899999999   889988888888888887777777666

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG3762|consensus

Probab=96.53  E-value=0.0037  Score=52.19  Aligned_cols=69  Identities=17%  Similarity=0.187  Sum_probs=51.1

Q ss_pred             hccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHh-hHHHHHHHHHHHh
Q psy13786         61 GMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMIT-NVPSLCGWLLMAT  129 (219)
Q Consensus        61 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~-~~~~~~~~~~~~~  129 (219)
                      +...+...|.++.+.   |+++.+.|.+...-.+..+++.|++|+++||+-+||.++++ .+......++..+
T Consensus        24 ~~~~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~f   96 (618)
T KOG3762|consen   24 GARFGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVF   96 (618)
T ss_pred             eecccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheee
Confidence            333444445555444   99999999999999999999999999999999877766654 4445555555554

>KOG2563|consensus

Probab=96.47  E-value=0.0067  Score=49.55  Aligned_cols=117  Identities=15%  Similarity=0.083  Sum_probs=75.2

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCC-chhhhHhhHHHHHHHHH-HHhh---hhHHHHHHHHHHHhhhhhcc
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGR-KSALMITNVPSLCGWLL-MATK---SDLINLYISRLLSGLSVGLA  150 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Gr-r~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~l~G~~~~~~  150 (219)
                      |.+....|++.....++.++++...|.+.||... |....+......++... ....   ...+.+...-.+.|++..+.
T Consensus       297 gY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~  376 (480)
T KOG2563|consen  297 GYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGY  376 (480)
T ss_pred             cCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCC
Confidence            7777889999999999999999999999999754 44455555554444222 1111   22334455566777777778


Q ss_pred             hhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        151 TTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                      .|...-+-.|..-|.   .-++..|..++...+-+++-..+.+..
T Consensus       377 ~Pig~ElgvE~TyPv---~E~tSsGll~~~gq~f~~~~~~~~~~~  418 (480)
T KOG2563|consen  377 LPIGFELGVETTYPV---AEGTSSGLLNLSGQIFGVILVFIMGIL  418 (480)
T ss_pred             CCcceeeeeeecccc---CCcccceeEEeehhHHHHHHHHHHHHH
Confidence            888777777775444   455666655555444444444444443

>KOG1479|consensus

Probab=96.03  E-value=0.25  Score=40.24  Aligned_cols=108  Identities=17%  Similarity=0.097  Sum_probs=71.4

Q ss_pred             hHHHHHHH-HHHHHHHHHhhHhHhhhhhCCchhhhHhhH--HHHHHHHHH------HhhhhHHHHHHHHHHHhhhhhcch
Q psy13786         81 QASWFASI-SAITMPIGCLLSGPIIDKYGRKSALMITNV--PSLCGWLLM------ATKSDLINLYISRLLSGLSVGLAT  151 (219)
Q Consensus        81 ~~~~~~~~-~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~--~~~~~~~~~------~~~~~~~~~~~~~~l~G~~~~~~~  151 (219)
                      -.-..... +++.-.+|.+...++-++ +||+..+....  +......+|      ..-.+.+..+....+.|+..|-..
T Consensus       283 y~~~~~~l~fN~~d~vG~~~a~~~~~~-~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYlt  361 (406)
T KOG1479|consen  283 YALLLVFLSFNVFDLIGSILAALLTWP-DPRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLT  361 (406)
T ss_pred             hHHHHHHHHhHHHHHhhhhhhhcccCC-CCceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHh
Confidence            34445556 889999997777776555 34444333221  111111111      123456677788899999999998


Q ss_pred             hhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHh
Q psy13786        152 TPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTG  192 (219)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  192 (219)
                      +....+..+..|++   ++..+..+.......|...|..++
T Consensus       362 sl~m~~aPk~v~~~---e~e~aG~~m~~fl~~Gl~~G~~~s  399 (406)
T KOG1479|consen  362 SLIMMYAPKQVKPS---EKEAAGNLMVFFLVGGLALGSLLS  399 (406)
T ss_pred             hheehhcCCCCChH---HHHHHHHHHHHHHHHHHHHhhHHH
Confidence            88899999999888   777776677777777777665554

>KOG2325|consensus

Probab=95.98  E-value=0.02  Score=47.69  Aligned_cols=67  Identities=9%  Similarity=0.046  Sum_probs=50.0

Q ss_pred             HHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHH
Q psy13786        141 LLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFL  210 (219)
Q Consensus       141 ~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~  210 (219)
                      ++.|.+.-.......+.-+|...++   ++++..+.+......+..++|++....    |.|+.+.+.....++
T Consensus       396 ~~~g~~~P~~~~~~~tlySkiLgp~---~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~  466 (488)
T KOG2325|consen  396 VVFGIAFPFISTALDTLYSKILGPR---DQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLV  466 (488)
T ss_pred             heeccccccccchHHHHHHHHhCCc---cccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHH
Confidence            4556555555666778889999999   899999999999999999998887766    667666555444333

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=95.80  E-value=0.23  Score=40.63  Aligned_cols=124  Identities=15%  Similarity=0.010  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCC
Q psy13786         85 FASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITI  164 (219)
Q Consensus        85 ~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~  164 (219)
                      +.-+-.+...+..+...+..+|...+.=+.+..+++.++.++.+++++.+.-+++-.+.+++.|......-.+ +..+++
T Consensus        64 Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y~~  142 (402)
T PF02487_consen   64 VLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THFYGK  142 (402)
T ss_pred             HHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHhcCc
Confidence            3334444555667777888888876555566777888899999999999988888999999888776666665 445554


Q ss_pred             CCccchhhHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHHHHHH
Q psy13786        165 HNTDLRGSLSTWSTIALTSGILLSYLTGAFF-----WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       165 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~~~~~  216 (219)
                      .       ..+.+..+.+.++.+|+..-..+     +-|..++....++++..+..+
T Consensus       143 ~-------~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f  192 (402)
T PF02487_consen  143 S-------SLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYF  192 (402)
T ss_pred             c-------ccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHH
Confidence            4       23445555555555554443333     456677776666655544443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=95.38  E-value=1.4  Score=36.93  Aligned_cols=117  Identities=15%  Similarity=0.084  Sum_probs=84.1

Q ss_pred             cCChhhHHHHHHHHHH-HHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhh---------hh-------------
Q psy13786         76 YLTIDQASWFASISAI-TMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATK---------SD-------------  132 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~---------~~-------------  132 (219)
                      ..+++...++=+..-+ ++++..++..++++++.|++++...........+++++.         ++             
T Consensus        57 ~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~  136 (509)
T COG3202          57 RQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPM  136 (509)
T ss_pred             cCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCc
Confidence            4667777888777777 677888999999999999999988777777777776641         11             


Q ss_pred             ----------HHHHHHHHHHHhhhhhcchh-hhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        133 ----------LINLYISRLLSGLSVGLATT-PAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       133 ----------~~~~~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                                .|...+.-.+.-+-...+.+ .-+....|.+..+   +-.|..+..+...+++..++..+..++
T Consensus       137 ~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~---eakRFy~lf~l~~ni~lllsg~~~~~~  207 (509)
T COG3202         137 FLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIE---EAKRFYPLFGLGANISLLLSGEVTSWL  207 (509)
T ss_pred             cceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---HhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                      12222222233332233333 4567888999988   889999999999999999988887777

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=94.82  E-value=0.7  Score=37.94  Aligned_cols=98  Identities=14%  Similarity=0.073  Sum_probs=73.0

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHh--hHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhhhh
Q psy13786         80 DQASWFASISAITMPIGCLLSGPIIDKYGRKSALMIT--NVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVY  157 (219)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~  157 (219)
                      .--|.+-++..+...++++..|++..++.+..-+..+  .++.+...++++..+|.+...++-++.+.......+....-
T Consensus       285 vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~q  364 (412)
T PF01770_consen  285 VYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQ  364 (412)
T ss_pred             ccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3457788888888889999999997777665444433  34444556667778999999988888887777777888888


Q ss_pred             hhhccCCCCccchhhHHHHHHHH
Q psy13786        158 AAECITIHNTDLRGSLSTWSTIA  180 (219)
Q Consensus       158 ~~~~~~~~~~~~r~~~~~~~~~~  180 (219)
                      ++.....+   .-|...|+++..
T Consensus       365 IA~~l~~e---~yaLVFGiNtf~  384 (412)
T PF01770_consen  365 IAKNLSEE---RYALVFGINTFV  384 (412)
T ss_pred             HHHhcccc---ceeeeeeeHHHH
Confidence            88888877   778888876664

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=94.78  E-value=0.008  Score=51.08  Aligned_cols=139  Identities=22%  Similarity=0.253  Sum_probs=0.0

Q ss_pred             HHhhhhhhccccccccchhhcc----cCChhhHHHHHHHHHH-HHHHHHhhHhHhhhhhC--CchhhhHhhHHHHHHHHH
Q psy13786         54 ILPGVAPGMSFGFPAVALPQMS----YLTIDQASWFASISAI-TMPIGCLLSGPIIDKYG--RKSALMITNVPSLCGWLL  126 (219)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~G--rr~~~~~~~~~~~~~~~~  126 (219)
                      .++..........+..+.|.+.    +.++.+++.+.....+ +.++|.+++|++..|+.  .|+......+...++.+.
T Consensus       311 ~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~  390 (539)
T PF03137_consen  311 ILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVIL  390 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHH
Confidence            3444444455555566777766    8888888888766655 57788899999999874  344444444433333332


Q ss_pred             HH---h-----------hhh----------------------------------------HHHHHHHHHHHhhhhhcchh
Q psy13786        127 MA---T-----------KSD----------------------------------------LINLYISRLLSGLSVGLATT  152 (219)
Q Consensus       127 ~~---~-----------~~~----------------------------------------~~~~~~~~~l~G~~~~~~~~  152 (219)
                      ..   +           ..+                                        +..+++..++.-+..+...+
T Consensus       391 ~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~  470 (539)
T PF03137_consen  391 YSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQV  470 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhccc
Confidence            00   0           000                                        11222333333333333344


Q ss_pred             hhhhhhhhccCCCCccchhhHHHHHHHHH-HHHHHHHHHHhhhh
Q psy13786        153 PAAVYAAECITIHNTDLRGSLSTWSTIAL-TSGILLSYLTGAFF  195 (219)
Q Consensus       153 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~g~~~~~~~~~~~  195 (219)
                      ......-...|++   +|+.++|+..... -+|.+-+|++.+.+
T Consensus       471 p~~~i~LR~V~~~---~rs~AlGv~~~~~rllg~IPgPIifG~i  511 (539)
T PF03137_consen  471 PSTLITLRCVPPE---QRSFALGVQWLIIRLLGFIPGPIIFGAI  511 (539)
T ss_dssp             --------------------------------------------
T ss_pred             chheeeeccCChh---hcchhhhHHHHHHHhhcCcchHHHHhHH
Confidence            4445556778888   9999999876555 45778888887766

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=94.29  E-value=0.014  Score=46.02  Aligned_cols=106  Identities=16%  Similarity=0.091  Sum_probs=3.8

Q ss_pred             HHHHHHHHHHHHHhhHhHhhhh-hCCchhhhHhh--HHHHHHHHHHH----------hhhhHHHHHHHHHHHhhhhhcch
Q psy13786         85 FASISAITMPIGCLLSGPIIDK-YGRKSALMITN--VPSLCGWLLMA----------TKSDLINLYISRLLSGLSVGLAT  151 (219)
Q Consensus        85 ~~~~~~~~~~~~~~~~g~l~d~-~Grr~~~~~~~--~~~~~~~~~~~----------~~~~~~~~~~~~~l~G~~~~~~~  151 (219)
                      ....++++-.+|..+.++..=+ ..+|++...+.  ++.....+++.          ..++-+..++..++.|+..|...
T Consensus       187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~  266 (309)
T PF01733_consen  187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS  266 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence            4556888888888877654211 12444433221  11222222221          12344566777899999999999


Q ss_pred             hhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhh
Q psy13786        152 TPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGA  193 (219)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  193 (219)
                      +....+..+..+++   +|..+..+...+..+|..+|..++.
T Consensus       267 tl~m~~~p~~v~~~---e~e~aG~~~~~~L~~Gl~~Gs~ls~  305 (309)
T PF01733_consen  267 TLAMMYAPKSVSPE---ERELAGSVMSFFLSFGLFIGSVLSF  305 (309)
T ss_dssp             HHHH--------------------------------------
T ss_pred             hceeeeCCCcCCHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988   8888877888877777777765543

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=94.21  E-value=0.071  Score=46.43  Aligned_cols=59  Identities=22%  Similarity=0.355  Sum_probs=44.1

Q ss_pred             ccchhhcc----cCChhhHHHHHHHHHH-HHHHHHhhHhHhhhhhCC--chhhhHhhHHHHHHHHH
Q psy13786         68 AVALPQMS----YLTIDQASWFASISAI-TMPIGCLLSGPIIDKYGR--KSALMITNVPSLCGWLL  126 (219)
Q Consensus        68 ~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~Gr--r~~~~~~~~~~~~~~~~  126 (219)
                      ..++|.+.    |+++.+.+++.....+ +.+++.++.|++.||+++  |+.+.++.++..++.++
T Consensus       350 ~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       350 ITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL  415 (633)
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence            33455444    9999999999888776 678999999999999984  46666666666665444

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=94.05  E-value=3.3  Score=35.08  Aligned_cols=117  Identities=13%  Similarity=0.130  Sum_probs=76.0

Q ss_pred             cCChhhHHHHHHHHHH-HHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhh---------hh-------------
Q psy13786         76 YLTIDQASWFASISAI-TMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATK---------SD-------------  132 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~---------~~-------------  132 (219)
                      ..+++.+.++=....+ ..++...+..+++++++|++++-+..........++++.         ++             
T Consensus        54 ~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~  133 (491)
T PF03219_consen   54 AQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPG  133 (491)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccch
Confidence            3456666666554444 345556779999999999999887776666655555531         11             


Q ss_pred             ---------HHHHHHHHHHHhhhhhcchh-hhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        133 ---------LINLYISRLLSGLSVGLATT-PAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       133 ---------~~~~~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                               .|...+.-...-+-.....+ .-+.+..|.++.+   +-.+..++.+.+.++|.+++..+....
T Consensus       134 ~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~---eAKRfYpl~g~ganigli~sG~~~~~~  203 (491)
T PF03219_consen  134 FKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVE---EAKRFYPLFGLGANIGLIFSGQLTSYF  203 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     11122222222232233333 4588999999999   888899999999999888887776655

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=93.04  E-value=2.5  Score=35.71  Aligned_cols=135  Identities=19%  Similarity=0.191  Sum_probs=73.5

Q ss_pred             HHhhhhhhccccccccchhhcc-----cCChhhHHHHHHH--HHHHHHHHHhhHhHhhh-----hhCCchhhhHh-hHHH
Q psy13786         54 ILPGVAPGMSFGFPAVALPQMS-----YLTIDQASWFASI--SAITMPIGCLLSGPIID-----KYGRKSALMIT-NVPS  120 (219)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~~~g~l~d-----~~Grr~~~~~~-~~~~  120 (219)
                      .+.++.+|.-.+......|.+.     +.+-+|.+...-+  .+-    ..+++.++.|     |+||||..++- -.+.
T Consensus         6 ~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfS----lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~   81 (544)
T PF13000_consen    6 VLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFS----LKLLWAPIVDSVYSKRIGRRKSWIIPIQYLS   81 (544)
T ss_pred             HHHHHHcCcccccccccchhhhccccCCCChhHheeeeeeechhH----HHHhhhhhhhhhcccccCCcchhhhHHHHHH
Confidence            3455666665555433444443     5555555543211  111    2345555544     89999987663 2333


Q ss_pred             HHHHHHHHhhh------------------------hHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHH
Q psy13786        121 LCGWLLMATKS------------------------DLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTW  176 (219)
Q Consensus       121 ~~~~~~~~~~~------------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  176 (219)
                      ++..+..+...                        +...+....++.=+-.+.-..++-.+.-.+..++   +++.+...
T Consensus        82 g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~---n~~~ASTc  158 (544)
T PF13000_consen   82 GILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPE---NVGYASTC  158 (544)
T ss_pred             HHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChh---hcchHHHH
Confidence            33333333211                        0112233333333333444555666777777888   89988888


Q ss_pred             HHHHHHHHHHHHHHHhhhh
Q psy13786        177 STIALTSGILLSYLTGAFF  195 (219)
Q Consensus       177 ~~~~~~~g~~~~~~~~~~~  195 (219)
                      +..+.+.|.+++..+.-.+
T Consensus       159 qtvG~~~Gyfls~tvFlal  177 (544)
T PF13000_consen  159 QTVGQTAGYFLSFTVFLAL  177 (544)
T ss_pred             HHhHhhhhHHHHHHHHHhh
Confidence            8888888888876665444

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG3880|consensus

Probab=92.71  E-value=0.23  Score=39.08  Aligned_cols=111  Identities=15%  Similarity=0.079  Sum_probs=73.3

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHH---HHHhhhhHHHHHHHHHHHhhhhhcchhhhhh
Q psy13786         80 DQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWL---LMATKSDLINLYISRLLSGLSVGLATTPAAV  156 (219)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~  156 (219)
                      .|.-|.+..+.+|-.+..-.....-  ...-+.+.+--....+..+   ...+.++++...+.-+.-|+-.|..++...-
T Consensus       288 sqYRwyqvlYQlGVFiSRSS~~~~~--~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~  365 (409)
T KOG3880|consen  288 SQYRWYQVLYQLGVFISRSSINLFT--MPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFH  365 (409)
T ss_pred             hcchhhheeeeeeEEEEeccceEEe--chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHH
Confidence            3567888888776554432111110  0011222222223333332   3345788888888888999988888888888


Q ss_pred             hhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        157 YAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       157 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                      -+.+-.+++   +|-.+++.....-.+|..++..++-.+
T Consensus       366 ~i~~e~~pd---~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  366 NIHKETEPD---VREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             HHhhcCCch---HHHHhHhhheecchhhHHHHHHHhccc
Confidence            888888888   999999999999999998888776544

>KOG4332|consensus

Probab=89.32  E-value=9  Score=30.02  Aligned_cols=153  Identities=15%  Similarity=0.103  Sum_probs=89.4

Q ss_pred             hhhhccccccccchhhcc-cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCc--hhhhHhhHHHHHHHHHHHh----h
Q psy13786         58 VAPGMSFGFPAVALPQMS-YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRK--SALMITNVPSLCGWLLMAT----K  130 (219)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr--~~~~~~~~~~~~~~~~~~~----~  130 (219)
                      .+.+........+.|.+. +-....-|.+.+.+.++..+|+-+..++..|-..|  ..+.+.....+....+...    +
T Consensus       259 LFE~smytFVFLWTPaLspn~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vs  338 (454)
T KOG4332|consen  259 LFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVS  338 (454)
T ss_pred             HHhhhhheeeeeecccCCCCcccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccC
Confidence            344444444445556554 22333458899999999999999988877654433  4445544444443333222    1


Q ss_pred             h---hHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHH
Q psy13786        131 S---DLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYI  203 (219)
Q Consensus       131 ~---~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~  203 (219)
                      +   +...-.++..+.-.+.|..+|...-+=.+..|.+   .|.+.+.++..-.++-.-++-..-...    +=|..|-+
T Consensus       339 P~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEe---arstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~i  415 (454)
T KOG4332|consen  339 PSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEE---ARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGI  415 (454)
T ss_pred             CCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHH---HHhhhhhheechhhHhhhhhheecccccCccccchhhhh
Confidence            1   2233355566667788889999999999999999   999888776554433322221110011    44556666


Q ss_pred             HHHHHHHHHH
Q psy13786        204 GAFVSFLSLV  213 (219)
Q Consensus       204 ~~~~~~~~~~  213 (219)
                      +.+...+..+
T Consensus       416 cS~~~~~a~i  425 (454)
T KOG4332|consen  416 CSAFLFVASI  425 (454)
T ss_pred             hHHHHHHHHH
Confidence            6655555433

>KOG0637|consensus

Probab=88.94  E-value=0.67  Score=38.43  Aligned_cols=129  Identities=14%  Similarity=-0.067  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhhhhhhhcc-
Q psy13786         84 WFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECI-  162 (219)
Q Consensus        84 ~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~-  162 (219)
                      |-..++.+...+.+...-+++||+|-|+.+..+...+.++.-+.+..++......-+...|+-.+......+..+++.. 
T Consensus       336 ~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~  415 (498)
T KOG0637|consen  336 LGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYAI  415 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHHH
Confidence            4455566677788888899999999777777766666666666777777776666677777544444333333332221 


Q ss_pred             -------------------CCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHH
Q psy13786        163 -------------------TIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF-----WYTTVAYIGAFVSFLSL  212 (219)
Q Consensus       163 -------------------~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~  212 (219)
                                         +.++++.+|...|+.+....+-+++.....+.+     +-+.+....+++++...
T Consensus       416 ~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~~~~  489 (498)
T KOG0637|consen  416 LGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVALLIG  489 (498)
T ss_pred             hCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHHHHH
Confidence                               111122345666667776666665554444333     33444444444444433

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=88.80  E-value=9.2  Score=29.46  Aligned_cols=100  Identities=13%  Similarity=0.052  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHhhHhHhhhh-hCCchhhh----HhhHHHHHHHHHHHh-----hhhHHHHHHHHHHHhhhhhcchhhh
Q psy13786         85 FASISAITMPIGCLLSGPIIDK-YGRKSALM----ITNVPSLCGWLLMAT-----KSDLINLYISRLLSGLSVGLATTPA  154 (219)
Q Consensus        85 ~~~~~~~~~~~~~~~~g~l~d~-~Grr~~~~----~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~G~~~~~~~~~~  154 (219)
                      ..-.+..+..+|....|+.+.. +.||+-+.    .+.++..+..+....     ..+...+.+.-++.|++.=+.+++.
T Consensus       146 ~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~Vi  225 (267)
T PF07672_consen  146 FQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQGVI  225 (267)
T ss_pred             HHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            3444555566666777777653 45555433    223333333333211     1245667778888888765555555


Q ss_pred             hhhhhhccCCCCccchhhHHHHHHHHHHHHHHHH
Q psy13786        155 AVYAAECITIHNTDLRGSLSTWSTIALTSGILLS  188 (219)
Q Consensus       155 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  188 (219)
                      -....|. +..   .+.+..-.....+++|.++-
T Consensus       226 L~lPhEy-K~~---~pk~ig~~Fg~iWGfGY~~y  255 (267)
T PF07672_consen  226 LNLPHEY-KGY---NPKKIGIQFGLIWGFGYIFY  255 (267)
T ss_pred             hcChhhh-cCC---CcceehhHHHHHHHHHHHHH
Confidence            4444443 333   23233334445555555543

>KOG3810|consensus

Probab=88.09  E-value=1.7  Score=34.94  Aligned_cols=100  Identities=9%  Similarity=0.190  Sum_probs=79.8

Q ss_pred             HHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchh
Q psy13786         92 TMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRG  171 (219)
Q Consensus        92 ~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~  171 (219)
                      .+.+.-.+.-.+.|-.--|++++.-.+.....+.+.-+.++.+..-+.-++.|...+ ...+.++|+-+..+++   ++.
T Consensus        54 SYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIAYysYIYs~Vd~~---~Yq  129 (433)
T KOG3810|consen   54 SYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIAYYSYIYSKVDPE---MYK  129 (433)
T ss_pred             HHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHHhhhheeeeecCHH---HHH
Confidence            344454555568898888999988888888888888899999988888889998765 4567788999999999   999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhh
Q psy13786        172 SLSTWSTIALTSGILLSYLTGAFF  195 (219)
Q Consensus       172 ~~~~~~~~~~~~g~~~~~~~~~~~  195 (219)
                      ++.+-...+.-.|.+.+..++..+
T Consensus       130 rvt~y~RaA~L~g~~~g~vlaQlL  153 (433)
T KOG3810|consen  130 RVTGYCRAAFLVGKFVGSVLAQLL  153 (433)
T ss_pred             HHHHHhHHHHHHHhHHHhHHHHHH
Confidence            999988777777777777776665

>TIGR00806 rfc RFC reduced folate carrier

Probab=87.90  E-value=2.4  Score=35.75  Aligned_cols=98  Identities=17%  Similarity=0.138  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhH--hhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhhhhhh
Q psy13786         82 ASWFASISAITMPIGCLLSGPIIDKYGRKSALMI--TNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAA  159 (219)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~  159 (219)
                      -|.+-++..+...+.++..|++-.++.+---+.+  ..++.+...++++..+|.|..+++-++.+.......++...-++
T Consensus       300 NG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA  379 (511)
T TIGR00806       300 NGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIA  379 (511)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566677777888889999999766644333333  33444455566777899999999999999888888888888899


Q ss_pred             hccCCCCccchhhHHHHHHHHHH
Q psy13786        160 ECITIHNTDLRGSLSTWSTIALT  182 (219)
Q Consensus       160 ~~~~~~~~~~r~~~~~~~~~~~~  182 (219)
                      .....+   .-|...|++++..-
T Consensus       380 ~~L~~~---~~aLvFGiNtfvAl  399 (511)
T TIGR00806       380 SSLSKE---LCALVFGINTFVAT  399 (511)
T ss_pred             HHhccc---ceEEEEecHHHHHH
Confidence            888888   77888888776433

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=86.50  E-value=3.8  Score=26.99  Aligned_cols=40  Identities=15%  Similarity=0.230  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHH
Q psy13786         82 ASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSL  121 (219)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~  121 (219)
                      .+.......++..++..+.+.+.|..|.+..+.+......
T Consensus        89 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (141)
T TIGR00880        89 LGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILAL  128 (141)
T ss_pred             HHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHH
Confidence            3455566667777777788888887777666555444333

>KOG3097|consensus

Probab=86.35  E-value=5.8  Score=31.76  Aligned_cols=72  Identities=13%  Similarity=0.114  Sum_probs=49.4

Q ss_pred             HHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhhhhhhhcc
Q psy13786         90 AITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECI  162 (219)
Q Consensus        90 ~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~  162 (219)
                      .+.-+..+++.+.+.+++|-|.++..+...+.... ..-+-+.+..++-.....|++.+..+..--+|+++.-
T Consensus        68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyi-A~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g  139 (390)
T KOG3097|consen   68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYI-AANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG  139 (390)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HhhcchhHHhhccHHHhhccccccccccCcceecHHH
Confidence            33444566666688999999999988766655432 1223456677788888999998877766666665544

>COG1288 Predicted membrane protein [Function unknown]

Probab=83.15  E-value=21  Score=29.68  Aligned_cols=73  Identities=15%  Similarity=0.124  Sum_probs=37.3

Q ss_pred             hHhhHHHHHHHHHHHhhhhH--HHHHHHHHHHhhhhh------cchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHH
Q psy13786        114 MITNVPSLCGWLLMATKSDL--INLYISRLLSGLSVG------LATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGI  185 (219)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~G~~~~------~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  185 (219)
                      +.-.++......+..+.+..  +..++...+.++..-      ...-...+=++|...-    .|..+.-.++.+.++-.
T Consensus       358 i~dTiL~~~~~~lsgls~~~f~i~mli~~~~l~f~VpS~SG~A~ltMPImAPLaD~vgv----~RqvvV~Afq~g~G~~n  433 (481)
T COG1288         358 ILDTILNYLASLLSGLSSAVFAIGMLIFQALLNFFVPSGSGLAVLTMPIMAPLADLVGV----PRQVVVLAFQLGDGFSN  433 (481)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHheEEEeCCCchhHhhchhhhhhHHhcCC----CHHHhhhhhhhcchhhh
Confidence            34445555555555554433  223344455554221      1111222234455544    47777777888777777


Q ss_pred             HHHHH
Q psy13786        186 LLSYL  190 (219)
Q Consensus       186 ~~~~~  190 (219)
                      ++.|-
T Consensus       434 ~I~PT  438 (481)
T COG1288         434 IIAPT  438 (481)
T ss_pred             eecCc
Confidence            66665

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=82.26  E-value=28  Score=29.08  Aligned_cols=128  Identities=15%  Similarity=0.023  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHH----HHHHH--hh--h-----hH--HHHHHHHHHHhhhh
Q psy13786         83 SWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCG----WLLMA--TK--S-----DL--INLYISRLLSGLSV  147 (219)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~----~~~~~--~~--~-----~~--~~~~~~~~l~G~~~  147 (219)
                      +...-.-.+..++.++..|...||..|.++...+.+.--++    +.+..  +.  .     +.  ..+++.-.+.|...
T Consensus        41 siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~  120 (432)
T PF06963_consen   41 SIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIE  120 (432)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHH
Confidence            33444455667788888999999999998876664433222    22222  11  1     11  11222222222211


Q ss_pred             hcchhhhhh------hhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHH
Q psy13786        148 GLATTPAAV------YAAECI--TIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVL  214 (219)
Q Consensus       148 ~~~~~~~~~------~~~~~~--~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~  214 (219)
                      - .......      ++..+.  +++   ...+.++...-.=-+..+++|++.+.+    +.+....+.++..++...+
T Consensus       121 ~-Las~~~~iavERDWVvvi~~~~~~---~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v  195 (432)
T PF06963_consen  121 R-LASIANTIAVERDWVVVIAGGDPG---ALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV  195 (432)
T ss_pred             H-HHHhhhhheeccchhhhhcCCChh---hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence            1 1111111      122222  122   344444444444455788899888887    5555556566666655544

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=80.11  E-value=31  Score=28.17  Aligned_cols=85  Identities=21%  Similarity=0.153  Sum_probs=56.3

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHH-------HHHHHHHh--hhhHHHHHHHHHHHhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSL-------CGWLLMAT--KSDLINLYISRLLSGLS  146 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~-------~~~~~~~~--~~~~~~~~~~~~l~G~~  146 (219)
                      |-+--|.+.+.+.+...+.+|+...-++.|.--.-+-+..-.++..       +..+.++.  .++.+.+++.-+++|.-
T Consensus        39 G~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~L  118 (508)
T COG4262          39 GGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGVL  118 (508)
T ss_pred             CCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            7777788899999999999999988887765322211111111111       11112222  34667788888999999


Q ss_pred             hhcchhhhhhhhhh
Q psy13786        147 VGLATTPAAVYAAE  160 (219)
Q Consensus       147 ~~~~~~~~~~~~~~  160 (219)
                      .|.-.|....++..
T Consensus       119 VG~EiPL~mrml~~  132 (508)
T COG4262         119 VGAEIPLLMRMLQR  132 (508)
T ss_pred             HhcchHHHHHHHHH
Confidence            99988988888766

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	219
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.88
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.88
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.87
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.84
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.83
2xut_A	524	Proton/peptide symporter family protein; transport	99.78
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.66
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.54
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.51
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.5
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.48
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.41
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.23
2xut_A	524	Proton/peptide symporter family protein; transport	99.02

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.88  E-value=4.5e-22  Score=161.27  Aligned_cols=162  Identities=15%  Similarity=0.059  Sum_probs=141.5

Q ss_pred             HHHHhhhhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHH-
Q psy13786         52 IVILPGVAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLM-  127 (219)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~-  127 (219)
                      .+.+..+..++......+..|.+.   |.++.+.+++.+.+.++..+++++.|+++||+|||+++.++.++.+++.+++ 
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~  109 (438)
T 3o7q_A           30 LLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFW  109 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            333444555555566666677665   9999999999999999999999999999999999999999999999999998 


Q ss_pred             --HhhhhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh-----h----
Q psy13786        128 --ATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF-----W----  196 (219)
Q Consensus       128 --~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~----  196 (219)
                        .++++++.+++.|++.|++.+...+...+++.|++|++   +|++++++.+.+..+|..++|.+++.+     +    
T Consensus       110 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~  186 (438)
T 3o7q_A          110 PAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES---SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQ  186 (438)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST---THHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCH
T ss_pred             hccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence              78899999999999999999999999999999999999   999999999999999999999998876     2    


Q ss_pred             ---------------------hHHHHHHHHHHHHHHHHHHH
Q psy13786        197 ---------------------YTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       197 ---------------------w~~~~~~~~~~~~~~~~~~~  216 (219)
                                           ||+.|++.++..++..++.+
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  227 (438)
T 3o7q_A          187 DVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM  227 (438)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence                                 99999887777666555443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.88  E-value=6.4e-22  Score=162.76  Aligned_cols=171  Identities=22%  Similarity=0.310  Sum_probs=145.3

Q ss_pred             hHHHHHHHHHHHHhhhhhhccccccccchhhcc-----------cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCch
Q psy13786         43 LFRLIYLGLIVILPGVAPGMSFGFPAVALPQMS-----------YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKS  111 (219)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~  111 (219)
                      .+..+.+.++..++.+.++++.+.++..+|.+.           +.++.+.+++.+.+.+|..+|++++|+++||+|||+
T Consensus         7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~   86 (491)
T 4gc0_A            7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD   86 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            344566667777888899999988887777654           123456789999999999999999999999999999


Q ss_pred             hhhHhhHHHHHHHHHHH------------------hhhhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhH
Q psy13786        112 ALMITNVPSLCGWLLMA------------------TKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSL  173 (219)
Q Consensus       112 ~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  173 (219)
                      ++.++.+++.++.++++                  .++|++.++++|++.|++.|+..+..+.+++|..|++   +|++.
T Consensus        87 ~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~---~rg~~  163 (491)
T 4gc0_A           87 SLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAH---IRGKL  163 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGG---GHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH---hhhhh
Confidence            99999999999999988                  4789999999999999999999999999999999999   99999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhh------------hhHHHHHHHHHHHHHHHHHHH
Q psy13786        174 STWSTIALTSGILLSYLTGAFF------------WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       174 ~~~~~~~~~~g~~~~~~~~~~~------------~w~~~~~~~~~~~~~~~~~~~  216 (219)
                      .++.+.+..+|..+++.++...            +||+.+....+..++..+..+
T Consensus       164 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (491)
T 4gc0_A          164 VSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLY  218 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGG
T ss_pred             HHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhh
Confidence            9999999999999988877654            577777777666666555443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.87  E-value=8.3e-22  Score=160.19  Aligned_cols=170  Identities=15%  Similarity=0.108  Sum_probs=147.8

Q ss_pred             HHHHHHHHHHHhhhhhhccccccccchhhcc-c-CChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHH
Q psy13786         45 RLIYLGLIVILPGVAPGMSFGFPAVALPQMS-Y-LTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLC  122 (219)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~  122 (219)
                      +++.......+..+..++......+.+|.+. + .++.+.+++.+.+.++..+++++.|+++||+|||+++.++.++.++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~  104 (451)
T 1pw4_A           25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA  104 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHH
Confidence            3445555556666666666666666677665 3 5778999999999999999999999999999999999999999999


Q ss_pred             HHHHHHh----hhhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh---
Q psy13786        123 GWLLMAT----KSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF---  195 (219)
Q Consensus       123 ~~~~~~~----~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---  195 (219)
                      +.+++++    +++++.+++.|++.|++.+...+...+++.|.+|++   +|++++++.+.+..+|..++|.+++.+   
T Consensus       105 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  181 (451)
T 1pw4_A          105 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK---ERGGIVSVWNCAHNVGGGIPPLLFLLGMAW  181 (451)
T ss_dssp             HHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT---HHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred             HHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCch---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999    999999999999999999999999999999999999   999999999999999999999999875   


Q ss_pred             -h-hHHHHHHHHHHHHHHHHHHHh
Q psy13786        196 -W-YTTVAYIGAFVSFLSLVLVAM  217 (219)
Q Consensus       196 -~-w~~~~~~~~~~~~~~~~~~~~  217 (219)
                       + ||+.|++.+++.++..++.++
T Consensus       182 ~g~w~~~f~~~~~~~~~~~~~~~~  205 (451)
T 1pw4_A          182 FNDWHAALYMPAFCAILVALFAFA  205 (451)
T ss_dssp             TCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHh
Confidence             7 999999988887776655543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.84  E-value=2e-20  Score=148.95  Aligned_cols=156  Identities=15%  Similarity=0.157  Sum_probs=139.5

Q ss_pred             Hhhhhhhccccccccchhhcc---cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhh
Q psy13786         55 LPGVAPGMSFGFPAVALPQMS---YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKS  131 (219)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~  131 (219)
                      +..+...+......+.+|.+.   |.++.+.+++.+...++..+++++.|+++||+|||+++.++.++..++.++..+++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~   86 (375)
T 2gfp_A            7 LLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS   86 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc
Confidence            344445555555666666554   89999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHH
Q psy13786        132 DLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFV  207 (219)
Q Consensus       132 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~  207 (219)
                      +++.+++.|++.|++.+...+....++.|.+|++   +|++.++..+....+|..++|.+++.+    +||+.+++.++.
T Consensus        87 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~  163 (375)
T 2gfp_A           87 SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT---QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVL  163 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHH
Confidence            9999999999999999999999999999999999   999999999999999999999999887    899999988877


Q ss_pred             HHHHHH
Q psy13786        208 SFLSLV  213 (219)
Q Consensus       208 ~~~~~~  213 (219)
                      .++..+
T Consensus       164 ~~~~~~  169 (375)
T 2gfp_A          164 CAGVTF  169 (375)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            766554

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.83  E-value=9.9e-20  Score=149.76  Aligned_cols=138  Identities=17%  Similarity=0.172  Sum_probs=127.5

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhh-hCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDK-YGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPA  154 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~  154 (219)
                      |.++.+.+++.+.+.++..+++++.|+++|| +|||+++.++.++..++.++++++++++.+++.|++.|++.+...+..
T Consensus        50 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~  129 (491)
T 4aps_A           50 HITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNV  129 (491)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchH
Confidence            8899999999999999999999999999999 899999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhccCCCCccc--hhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHH
Q psy13786        155 AVYAAECITIHNTDL--RGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       155 ~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~  216 (219)
                      .+++.|.+|++   +  |+++.+.++.+..+|..++|.+++.+    +||+.|++.++..++..+..+
T Consensus       130 ~~~~~~~~~~~---~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  194 (491)
T 4aps_A          130 STLVGTLYDEH---DRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYY  194 (491)
T ss_dssp             HHHHHHHSSSC---TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCcc---cccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998   7  77788889999999999999999887    899999998777666655443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.78  E-value=3.8e-18  Score=141.47  Aligned_cols=136  Identities=15%  Similarity=0.136  Sum_probs=124.9

Q ss_pred             CChhhHHHHHHHHHHHHHHHHhhHhHhhhhh-CCchhhhHhhHHHHHHHHHHHhhh-hHHHHHHHHHHHhhhhhcchhhh
Q psy13786         77 LTIDQASWFASISAITMPIGCLLSGPIIDKY-GRKSALMITNVPSLCGWLLMATKS-DLINLYISRLLSGLSVGLATTPA  154 (219)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~~~~~~~~~~  154 (219)
                      .++.+.+++.+.+.++..+++++.|+++||+ |||+++.++.++..++.++..+++ +++.+++.|++.|++.+...+..
T Consensus        51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~  130 (524)
T 2xut_A           51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV  130 (524)
T ss_dssp             TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence            8999999999999999999999999999999 999999999999999999999998 99999999999999999999999


Q ss_pred             hhhhhhccCCCCccchhhHHHH---HHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHH
Q psy13786        155 AVYAAECITIHNTDLRGSLSTW---STIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLV  215 (219)
Q Consensus       155 ~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~  215 (219)
                      .+++.|.+|++   +|++..+.   .+.+..+|..++|.+++.+    +|++.|++.++..++..+..
T Consensus       131 ~~~~~~~~~~~---~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~  195 (524)
T 2xut_A          131 SSFMGDQFDQS---NKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFF  195 (524)
T ss_dssp             HHHHHHTCSTT---TTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999   99876666   8899999999999998877    89999998887766655543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.66  E-value=3.9e-15  Score=120.81  Aligned_cols=138  Identities=14%  Similarity=0.104  Sum_probs=119.6

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhh--CCchhhhHhhHHHH-HHHHHHHhh--hhHHHHHHHHHHHhhhhhcc
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKY--GRKSALMITNVPSL-CGWLLMATK--SDLINLYISRLLSGLSVGLA  150 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--Grr~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~l~G~~~~~~  150 (219)
                      |.++.+.+++.+...++..++.++.|++.||+  |||+.+.++..+.. ++.++..+.  .+.+.+.+..++.|++.+..
T Consensus       284 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  363 (451)
T 1pw4_A          284 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGP  363 (451)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhch
Confidence            88999999999999999999999999999999  99999888777666 666655554  36777778888999988888


Q ss_pred             hhhhhhhhhhccCCCCccchhhHHHHHHHHHHH-HHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHH
Q psy13786        151 TTPAAVYAAECITIHNTDLRGSLSTWSTIALTS-GILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~  216 (219)
                      .+....++.|.+|++   +|+++.++.+....+ |..++|.+.+.+    +|+..|++.+++.++..++.+
T Consensus       364 ~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  431 (451)
T 1pw4_A          364 VMLIGLHALELAPKK---AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  431 (451)
T ss_dssp             HHHHHHHHHHTSCTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhchh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence            888899999999999   999999999999999 999999998877    789999888887777666554

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.54  E-value=3.6e-14  Score=114.63  Aligned_cols=135  Identities=8%  Similarity=0.087  Sum_probs=112.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhhhhh
Q psy13786         79 IDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYA  158 (219)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~  158 (219)
                      ....+...+...++..++.++.|+++||+|||+++..+.++.+++.+..++.++.+.+++..++.+++.+...+....++
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  337 (417)
T 2cfq_A          258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI  337 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567778888888899999999999999999999988888888777777777777777777778877766667778899


Q ss_pred             hhccCCCCccchhhHHHH-HHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHH
Q psy13786        159 AECITIHNTDLRGSLSTW-STIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       159 ~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~  216 (219)
                      .|.+|++   .|+++.+. ++....+|..++|.+++.+    +++..|.+.++++++..+..+
T Consensus       338 ~~~~p~~---~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~  397 (417)
T 2cfq_A          338 TSQFEVR---FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISV  397 (417)
T ss_dssp             HHHSCHH---HHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHCCHH---HHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence            9999999   99999998 5888899999999999877    777888888877777766544

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.51  E-value=2.1e-14  Score=117.93  Aligned_cols=140  Identities=15%  Similarity=0.061  Sum_probs=103.4

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhh-----hhHHHHHHHHHHHhhhhhcc
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATK-----SDLINLYISRLLSGLSVGLA  150 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~G~~~~~~  150 (219)
                      +.+..+.........+...++.++.+++.||+|||+.++.+.....++.+..+..     ++...+....+..+......
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (491)
T 4gc0_A          308 GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSW  387 (491)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred             CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHH
Confidence            6667777777788888999999999999999999999999888888777665532     12222222222222222334


Q ss_pred             hhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----------hhHHHHHHHHHHHHHHHHHHHhh
Q psy13786        151 TTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----------WYTTVAYIGAFVSFLSLVLVAMI  218 (219)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----------~w~~~~~~~~~~~~~~~~~~~~~  218 (219)
                      .+..+.+.+|.+|++   .|+++.++.+....+++.+++.+...+          ++.+.|++.++++++..+..+++
T Consensus       388 ~~~~~~~~~E~fPt~---~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~  462 (491)
T 4gc0_A          388 GPVCWVLLSEIFPNA---IRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKF  462 (491)
T ss_dssp             THHHHHHHHHSSCTT---THHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhe
Confidence            577789999999999   999999999999999988887765544          34456778888888887777654

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.50  E-value=1.6e-13  Score=110.97  Aligned_cols=132  Identities=12%  Similarity=0.053  Sum_probs=110.1

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAA  155 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~  155 (219)
                      |.++.+.++..+...++..++.++.|+++||+|||+++..+.++..++.++..+.++.+.++. .++.|++.+...+...
T Consensus       291 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~  369 (438)
T 3o7q_A          291 GMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA-LTLCSAFMSIQYPTIF  369 (438)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHTTHHHHHH
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999999999999999888888888777765444 4888899888899999


Q ss_pred             hhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----h-hHHHHHHHHHHHHHHHH
Q psy13786        156 VYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----W-YTTVAYIGAFVSFLSLV  213 (219)
Q Consensus       156 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~-w~~~~~~~~~~~~~~~~  213 (219)
                      .+..|.+|++    |+.+.++.. ...+|..++|.+.+.+    + ++..|++.++..++..+
T Consensus       370 ~~~~~~~~~~----~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  427 (438)
T 3o7q_A          370 SLGIKNLGQD----TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_dssp             HHHHSSCGGG----HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred             HHHHhhcccc----ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            9999999854    777887766 4568999999988877    6 88888876655444443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.48  E-value=1.2e-13  Score=113.55  Aligned_cols=139  Identities=12%  Similarity=0.034  Sum_probs=111.8

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhh-----HhhHHHHHHHHHHHhhh---------hHHHHHHHHH
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALM-----ITNVPSLCGWLLMATKS---------DLINLYISRL  141 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~-----~~~~~~~~~~~~~~~~~---------~~~~~~~~~~  141 (219)
                      +.+..+.++..+...++..++.++.+++.||+|||+...     .+.++.+++.++.....         +.+.+.+..+
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (491)
T 4aps_A          315 DSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWA  394 (491)
T ss_dssp             CCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHH
T ss_pred             ccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Confidence            555567788888889999999999999999999997665     66666666666555532         6677778889


Q ss_pred             HHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHHHHHHHh
Q psy13786        142 LSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF---WYTTVAYIGAFVSFLSLVLVAM  217 (219)
Q Consensus       142 l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~  217 (219)
                      +.|++.+...+....++.|.+|++   +|+++.++.+....+|..+++.+.+..   ++.+.|...++.+++..+..++
T Consensus       395 l~g~~~~~~~~~~~~~~~~~~p~~---~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (491)
T 4aps_A          395 LVILGEMLISPVGLSVTTKLAPKA---FNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVF  470 (491)
T ss_dssp             HHHHHHHTTTTHHHHHHHHHTTTT---CSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHhCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            999999988999999999999999   999999999999999999999998887   6667777777776666655443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.41  E-value=2.7e-14  Score=115.38  Aligned_cols=133  Identities=13%  Similarity=0.093  Sum_probs=90.8

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHH---HHHHhhhhHH-HHHHHHHHHhhhhhcch
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGW---LLMATKSDLI-NLYISRLLSGLSVGLAT  151 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~l~G~~~~~~~  151 (219)
                      |.++.+.+++.+...++..++++++|+++||+|||+++.++..+..+..   ....+.+... .+...+.+.|++.+...
T Consensus        39 g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  118 (417)
T 2cfq_A           39 HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCF  118 (417)
T ss_dssp             CCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999999999999999999999998876655422   1112222111 12344555555544443


Q ss_pred             hhhhhhhhhccCC--CCccchhhHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHH
Q psy13786        152 TPAAVYAAECITI--HNTDLRGSLSTWSTIALTSGILLSYLTGAFF---WYTTVAYIGAFVSFLS  211 (219)
Q Consensus       152 ~~~~~~~~~~~~~--~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~w~~~~~~~~~~~~~~  211 (219)
                      +.......+..++  +   +|+...+..+....+|..++|.+++.+   +|++.|++.++..++.
T Consensus       119 ~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~  180 (417)
T 2cfq_A          119 NAGAPAVEAFIEKVSR---RSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALIL  180 (417)
T ss_dssp             HTTHHHHHHHHHHHHH---HHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTH
T ss_pred             hhhHHHHHHHHHHhhh---hcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence            3333334444332  3   467667777777788888888888876   7899888766554433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.23  E-value=1.1e-11  Score=98.29  Aligned_cols=122  Identities=14%  Similarity=0.038  Sum_probs=95.6

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHH-HHHHHH--HHHh--hhhHHHHHHHHHHHhhhhhcc
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVP-SLCGWL--LMAT--KSDLINLYISRLLSGLSVGLA  150 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~-~~~~~~--~~~~--~~~~~~~~~~~~l~G~~~~~~  150 (219)
                      |.++.+.+.+.+...++..++.++.+++.||+|+|.  ..+... ...+..  ....  .++.+.+.+..++.|++.+..
T Consensus       231 g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~  308 (375)
T 2gfp_A          231 GLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGML  308 (375)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHh
Confidence            788889999999999999999999999999998732  222222 222221  1222  246677777888999999999


Q ss_pred             hhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHH
Q psy13786        151 TTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF----WYTTVAYI  203 (219)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~  203 (219)
                      .+....+..|..| +   +|+++.++.+....+|..++|.+.+.+    +|+..+..
T Consensus       309 ~~~~~~~~~~~~p-~---~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~  361 (375)
T 2gfp_A          309 FPLATSGAMEPFP-F---LAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM  361 (375)
T ss_dssp             SSTTHHHHHTHHH-H---HHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhCC-c---ccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence            9999999999998 8   899999999999999999999888877    56555554

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.02  E-value=1.1e-09  Score=90.54  Aligned_cols=132  Identities=11%  Similarity=0.163  Sum_probs=95.6

Q ss_pred             hHHHHHHHHHHHHHHHHhhHhHhh----hhhCCc----hhhhHhhHHHHHHHHHHHhh---------hhHHHHHHHHHHH
Q psy13786         81 QASWFASISAITMPIGCLLSGPII----DKYGRK----SALMITNVPSLCGWLLMATK---------SDLINLYISRLLS  143 (219)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~g~l~----d~~Grr----~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~  143 (219)
                      ..+.+.+...++..++.++.+++.    ||.|+|    +.+.++.++.+++.++..+.         .+.+.+.+..++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  415 (524)
T 2xut_A          336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL  415 (524)
T ss_dssp             CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence            456666666777777777777764    555433    45566777777776666553         3566677788999


Q ss_pred             hhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh------hh---------HHHHHHHHHHH
Q psy13786        144 GLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF------WY---------TTVAYIGAFVS  208 (219)
Q Consensus       144 G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~------~w---------~~~~~~~~~~~  208 (219)
                      |++.+...+....++.|..|++   +|++++|+.+....+|..++|.+.+.+      +|         +..|++.+++.
T Consensus       416 g~~~~~~~~~~~~~~~~~~p~~---~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  492 (524)
T 2xut_A          416 TFGEVLVSATGLEFAYSQAPKA---MKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFA  492 (524)
T ss_dssp             HHHHHHHHHHHTTTHHHHCCTT---CCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCcHH---HHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHH
Confidence            9999999999999999999999   999999999999999999999998877      24         33366666666


Q ss_pred             HHHHHHH
Q psy13786        209 FLSLVLV  215 (219)
Q Consensus       209 ~~~~~~~  215 (219)
                      ++..++.
T Consensus       493 ~~~~~~~  499 (524)
T 2xut_A          493 ILAAIVF  499 (524)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	219
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	3e-05
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	6e-04

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 42.1 bits (97), Expect = 3e-05
 Identities = 20/152 (13%), Positives = 43/152 (28%)

Query: 46  LIYLGLIVILPGVAPGMSFGFPAVALPQMSYLTIDQASWFASISAITMPIGCLLSGPIID 105
               GL         G  F F  + L  +++++        +  ++   +   L G + D
Sbjct: 9   FWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSD 68

Query: 106 KYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIH 165
           K G +  L+      L  +           L  + L+  +  G+         A  +   
Sbjct: 69  KLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAF 128

Query: 166 NTDLRGSLSTWSTIALTSGILLSYLTGAFFWY 197
              +    +     A   G +   L  +    
Sbjct: 129 IEKVSRRSNFEFGRARMFGCVGWALGASIVGI 160

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 37.7 bits (86), Expect = 6e-04
 Identities = 20/160 (12%), Positives = 49/160 (30%), Gaps = 8/160 (5%)

Query: 68  AVALPQMS--YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRK----SALMITNVPSL 121
           A+A+P +     +     +  S  +I       + G + D+   +    + L++     L
Sbjct: 45  ALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVML 104

Query: 122 CGWLLMATKSDLINLYISRLLSGLSVGLATTPAAVYAAECITIHN--TDLRGSLSTWSTI 179
               +    S +  +++   L G   G+   P         +       +       +  
Sbjct: 105 FMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVG 164

Query: 180 ALTSGILLSYLTGAFFWYTTVAYIGAFVSFLSLVLVAMII 219
                +L       F  +    Y+ AF + L  +    ++
Sbjct: 165 GGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMM 204

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	219
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.89
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.64
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.57
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.48

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=3.6e-23  Score=165.65  Aligned_cols=171  Identities=15%  Similarity=0.090  Sum_probs=146.2

Q ss_pred             HHHHHHHHHHHHhhhhhhccccccccchhhcc--cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHH
Q psy13786         44 FRLIYLGLIVILPGVAPGMSFGFPAVALPQMS--YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSL  121 (219)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~  121 (219)
                      +.+|.+...+.++++....+...++...|.+.  |+++++.|++.+.+.++..++++++|+++||+|||+++.++.++.+
T Consensus        21 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~  100 (447)
T d1pw4a_          21 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA  100 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence            34566666666666666666666666666655  9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhh----hhHHHHHHHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh--
Q psy13786        122 CGWLLMATK----SDLINLYISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF--  195 (219)
Q Consensus       122 ~~~~~~~~~----~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~--  195 (219)
                      ++.++++++    ++++.+++.|++.|++.+...+....++.|++|++   +|++++++.+.+..+|..++|.++...  
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~g~~i~~~~~~~~~~  177 (447)
T d1pw4a_         101 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK---ERGGIVSVWNCAHNVGGGIPPLLFLLGMA  177 (447)
T ss_dssp             HHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT---HHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             HHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhh---cccccccccccccchhhhhhhhhhhhHhh
Confidence            998888775    46778999999999999999999999999999999   999999999999999999998877765  


Q ss_pred             ---hhHHHHHHHHHHHHHHHHHHHh
Q psy13786        196 ---WYTTVAYIGAFVSFLSLVLVAM  217 (219)
Q Consensus       196 ---~w~~~~~~~~~~~~~~~~~~~~  217 (219)
                         +||+.+++.+++.++..++.++
T Consensus       178 ~~~~w~~~~~~~~~~~~~~~~~~~~  202 (447)
T d1pw4a_         178 WFNDWHAALYMPAFCAILVALFAFA  202 (447)
T ss_dssp             HTCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             hhhcccccchhhhhhHHHHHHHHHH
Confidence               8999988888777776665544

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=8.9e-16  Score=120.04  Aligned_cols=140  Identities=8%  Similarity=0.074  Sum_probs=124.3

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhcchhhhh
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINLYISRLLSGLSVGLATTPAA  155 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~  155 (219)
                      +.+....+...+...++..++..+.+++.||+|||+.+.++.++..++.+...+.++.+.+++..++.|++.+...+...
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  334 (417)
T d1pv7a_         255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCF  334 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence            55566777888888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCCCCccchhhHHHH-HHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhh
Q psy13786        156 VYAAECITIHNTDLRGSLSTW-STIALTSGILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVAMI  218 (219)
Q Consensus       156 ~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~~  218 (219)
                      .++.|.+|++   .|++..++ .+....+|..++|.+.+.+    ||+..+++.+++.++..++.++.
T Consensus       335 ~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  399 (417)
T d1pv7a_         335 KYITSQFEVR---FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT  399 (417)
T ss_dssp             HHHHHHSCGG---GHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999   99999996 5677889999999988877    89999998888877776665543

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=1.2e-13  Score=109.58  Aligned_cols=138  Identities=14%  Similarity=0.034  Sum_probs=108.4

Q ss_pred             cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHh-----hhhHHHHHHHHHHHhhhhhcc
Q psy13786         76 YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMAT-----KSDLINLYISRLLSGLSVGLA  150 (219)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~G~~~~~~  150 (219)
                      +.+..+.++..+...++..++.++.|++.||++||+..........+.......     ..+.+...+..++.|++.+..
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  360 (447)
T d1pw4a_         281 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGP  360 (447)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHH
T ss_pred             ccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999887554444333332222221     456777777888889988888


Q ss_pred             hhhhhhhhhhccCCCCccchhhHHHHHHHHHHH-HHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHH
Q psy13786        151 TTPAAVYAAECITIHNTDLRGSLSTWSTIALTS-GILLSYLTGAFF----WYTTVAYIGAFVSFLSLVLVA  216 (219)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~  216 (219)
                      .+....+..|.+|++   .|+++.|+.+....+ |...+|.+.+.+    ||+..+++.+...++..++.+
T Consensus       361 ~~~~~~~~~~~~p~~---~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  428 (447)
T d1pw4a_         361 VMLIGLHALELAPKK---AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  428 (447)
T ss_dssp             HHHHHHHHHHTSCTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            888899999999999   999999998877766 566788887776    889888887777666655544

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=2.2e-13  Score=106.18  Aligned_cols=149  Identities=13%  Similarity=0.020  Sum_probs=101.0

Q ss_pred             ccccchhhcc----cCChhhHHHHHHHHHHHHHHHHhhHhHhhhhhCCchhhhHhhHHHHHHHHHHHhhhhHHHH----H
Q psy13786         66 FPAVALPQMS----YLTIDQASWFASISAITMPIGCLLSGPIIDKYGRKSALMITNVPSLCGWLLMATKSDLINL----Y  137 (219)
Q Consensus        66 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~----~  137 (219)
                      ...+.+|.+.    |.|+.+.|++.++..++..+++++.|+++||+||||+++++.....++..+.....+....    .
T Consensus        25 ~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (417)
T d1pv7a_          25 AYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNIL  104 (417)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            3345555432    9999999999999999999999999999999999999999988888888887776554433    3


Q ss_pred             HHHHHHhhhhhcchhhhhhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHHHHH
Q psy13786        138 ISRLLSGLSVGLATTPAAVYAAECITIHNTDLRGSLSTWSTIALTSGILLSYLTGAFF---WYTTVAYIGAFVSFLSLVL  214 (219)
Q Consensus       138 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~  214 (219)
                      +.+.+.+.+.+...........+..+++ .+++....+........+..+++.+++.+   +|+..+........+..+.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  183 (417)
T d1pv7a_         105 VGSIVGGIYLGFCFNAGAPAVEAFIEKV-SRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVL  183 (417)
T ss_dssp             HHHHHTTTTGGGGGTTHHHHHHHHHHHH-HHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhcccccccchhhcccccccch-hhhhHHHHHHHhhhhccccccccccccccccccccccccchhhHHHHHHHH
Confidence            4445555544444444443333333222 00345556667777778888888888777   5555555555554444443


Q ss_pred             H
Q psy13786        215 V  215 (219)
Q Consensus       215 ~  215 (219)
                      .
T Consensus       184 ~  184 (417)
T d1pv7a_         184 L  184 (417)
T ss_dssp             H
T ss_pred             H
Confidence            3