Psyllid ID: psy13804

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MAKRIQMRKNRFMALQKVAEQKKTIEATGHPGQLGLGHGPPGGTLENTINGRSTDEEANAPPGPGGGAHLIHPGKDINKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVLLEEDK
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccHcHHHHHHHEHEHHHHHHHHHEHHHHHHEHccccHHHHEEccccc
Coil and Loop (DISEMBL)
MAKRIQMRKNRFMALQKVAEQKKTieatghpgqlglghgppggtlentingrstdeeanappgpgggahlihpgkdinklygitpsdidkysriVFPVCFVCFNLMYWIIYLHISDVVADDLVLLEEDK
Flexible Loop (DISEMBL)
MAKRIQMRKNRFMALQKVAEQKKTIEATGhpgqlglghgppGGTLENTINGRSTDEEANAPPGPGGGAHLIHPGKDINKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVLLEEDK
Low Complexity Region (SEG)
MAKRIQMRKNRFMALQKVAEQKKTIEAtghpgqlglghgppggtlENTINGRSTDEEANAppgpgggAHLIHPGKDINKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVLLEEDK
Disordered region (IsUnstruct)
*********************************************************************LIHPGKDINKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVLL****
Disordered Region (DISOPRED)
*********************************************************************************GITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVLLE***
Disordered Region (DISEMBL)
MAKRIQMRKNRFMALQKVAEQKKTIEATGHPGQLGLGHGPPGGTLENTINGRSTDEEANAPPGPGGGAHLIHPGKDINKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVLLEEDK
Disordered Region (DISPRO)
*AKRIQMRKNRFMALQKVAEQKK*******************************************GAHLIHPGKDINKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVLLEE**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKRIQMRKNRFMALQKVAEQKKTIEATGHPGQLGLGHGPPGGTLENTINGRSTDEEANAPPGPGGGAHLIHPGKDINKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVLLEEDK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	129	2.2.26 [Sep-21-2011]
Q75NA5	576	Gamma-aminobutyric acid r	N/A	N/A	0.534	0.119	0.782	2e-28
Q9BLY8	606	Gamma-aminobutyric acid r	N/A	N/A	0.627	0.133	0.560	4e-28
P25123	606	Gamma-aminobutyric acid r	yes	N/A	0.627	0.133	0.560	4e-28
O18276	550	Gamma-aminobutyric acid r	yes	N/A	0.209	0.049	0.666	3e-06
P30191	453	Gamma-aminobutyric acid r	yes	N/A	0.209	0.059	0.703	9e-06
P16305	453	Gamma-aminobutyric acid r	yes	N/A	0.209	0.059	0.703	9e-06
P23415	457	Glycine receptor subunit	yes	N/A	0.449	0.126	0.359	1e-05
P57695	457	Glycine receptor subunit	no	N/A	0.449	0.126	0.359	1e-05
Q16445	453	Gamma-aminobutyric acid r	no	N/A	0.209	0.059	0.666	1e-05
Q90845	465	Gamma-aminobutyric acid r	yes	N/A	0.209	0.058	0.666	1e-05

>sp|Q75NA5|GBRB_MUSDO Gamma-aminobutyric acid receptor subunit beta OS=Musca domestica GN=Rdl PE=1 SV=2

 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/78 (78%), Positives = 64/78 (82%), Gaps = 9/78 (11%)

Query: 55  DEEANAPPGPGGGAHLIHPGK---DINKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIY 111
           D EA  P      AHL+HPGK   DINKL GITPSDIDKYSRIVFPVCFVCFNLMYWIIY
Sbjct: 505 DAEAAVP------AHLLHPGKVKKDINKLLGITPSDIDKYSRIVFPVCFVCFNLMYWIIY 558

Query: 112 LHISDVVADDLVLLEEDK 129
           LH+SDVVADDLVLL E+K
Sbjct: 559 LHVSDVVADDLVLLGEEK 576

GABA, an inhibitory neurotransmitter, mediates neuronal inhibition by binding to the GABA receptor and opening an integral chloride channel.
Musca domestica (taxid: 7370)

>sp|Q9BLY8|GBRB_DROSI Gamma-aminobutyric acid receptor subunit beta OS=Drosophila simulans GN=Rdl PE=2 SV=1

 Score =  123 bits (308), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 69/123 (56%), Positives = 73/123 (59%), Gaps = 42/123 (34%)

Query: 42  GGTLENTING---------------------------------RSTDEEANAPPGPGGGA 68
           GGTLENT+NG                                    D EA  P      A
Sbjct: 490 GGTLENTVNGGRGGPQSHGPGPGQGGGPPGGGGGGGGGGGPPEGGGDPEAAVP------A 543

Query: 69  HLIHPGK---DINKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVLL 125
           HL+HPGK   DINKL GITPSDIDKYSRIVFPVCFVCFNLMYWIIYLH+SDVVADDLVLL
Sbjct: 544 HLLHPGKVKKDINKLLGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHVSDVVADDLVLL 603

Query: 126 EED 128
            E+
Sbjct: 604 GEE 606

GABA, an inhibitory neurotransmitter, mediates neuronal inhibition by binding to the GABA receptor and opening an integral chloride channel.

Drosophila simulans (taxid: 7240)

>sp|P25123|GBRB_DROME Gamma-aminobutyric acid receptor subunit beta OS=Drosophila melanogaster GN=Rdl PE=2 SV=3

 Score =  123 bits (308), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 69/123 (56%), Positives = 73/123 (59%), Gaps = 42/123 (34%)

Query: 42  GGTLENTING---------------------------------RSTDEEANAPPGPGGGA 68
           GGTLENT+NG                                    D EA  P      A
Sbjct: 490 GGTLENTVNGGRGGPQSHGPGPGQGGGPPGGGGGGGGGGGPPEGGGDPEAAVP------A 543

Query: 69  HLIHPGK---DINKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVLL 125
           HL+HPGK   DINKL GITPSDIDKYSRIVFPVCFVCFNLMYWIIYLH+SDVVADDLVLL
Sbjct: 544 HLLHPGKVKKDINKLLGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHVSDVVADDLVLL 603

Query: 126 EED 128
            E+
Sbjct: 604 GEE 606

GABA, an inhibitory neurotransmitter, mediates neuronal inhibition by binding to the GABA receptor and opening an integral chloride channel.

Drosophila melanogaster (taxid: 7227)

>sp|O18276|GBRB_CAEEL Gamma-aminobutyric acid receptor subunit beta OS=Caenorhabditis elegans GN=gab-1 PE=2 SV=3

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/27 (66%), Positives = 22/27 (81%)

Query: 88  IDKYSRIVFPVCFVCFNLMYWIIYLHI 114
           IDKYSR+VFPVCF+ FNL YW  Y+ +
Sbjct: 522 IDKYSRVVFPVCFIVFNLFYWSYYMMV 548

GABA, an inhibitory neurotransmitter, mediates neuronal inhibition by binding to the GABA receptor and opening an integral chloride channel.

Caenorhabditis elegans (taxid: 6239)

>sp|P30191|GBRA6_RAT Gamma-aminobutyric acid receptor subunit alpha-6 OS=Rattus norvegicus GN=Gabra6 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/27 (70%), Positives = 23/27 (85%)

Query: 86  SDIDKYSRIVFPVCFVCFNLMYWIIYL 112
           S ID+YSRI+FPV F  FNL+YWI+YL
Sbjct: 415 SKIDQYSRILFPVAFAGFNLVYWIVYL 441

GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel.

Rattus norvegicus (taxid: 10116)

>sp|P16305|GBRA6_MOUSE Gamma-aminobutyric acid receptor subunit alpha-6 OS=Mus musculus GN=Gabra6 PE=1 SV=3

 Score = 48.9 bits (115), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/27 (70%), Positives = 23/27 (85%)

Query: 86  SDIDKYSRIVFPVCFVCFNLMYWIIYL 112
           S ID+YSRI+FPV F  FNL+YWI+YL
Sbjct: 415 SKIDQYSRILFPVAFAGFNLVYWIVYL 441

GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel.

Mus musculus (taxid: 10090)

>sp|P23415|GLRA1_HUMAN Glycine receptor subunit alpha-1 OS=Homo sapiens GN=GLRA1 PE=1 SV=2

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 6/64 (9%)

Query: 48  TINGRSTDEEANAPPGPGGGAHLIHPGKDINKLYGITPSDIDKYSRIVFPVCFVCFNLMY 107
           ++ G +     N PP P          +++ KL+      IDK SRI FP+ F+ FN+ Y
Sbjct: 389 SVKGANNSNTTNPPPAPSKSP------EEMRKLFIQRAKKIDKISRIGFPMAFLIFNMFY 442

Query: 108 WIIY 111
           WIIY
Sbjct: 443 WIIY 446

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Homo sapiens (taxid: 9606)

>sp|P57695|GLRA1_BOVIN Glycine receptor subunit alpha-1 OS=Bos taurus GN=GLRA1 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 6/64 (9%)

Query: 48  TINGRSTDEEANAPPGPGGGAHLIHPGKDINKLYGITPSDIDKYSRIVFPVCFVCFNLMY 107
           ++ G +     N PP P          +++ KL+      IDK SRI FP+ F+ FN+ Y
Sbjct: 389 SVKGANNSNTTNPPPAPSKSP------EEMRKLFIQRAKKIDKISRIGFPMAFLIFNMFY 442

Query: 108 WIIY 111
           WIIY
Sbjct: 443 WIIY 446

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Bos taurus (taxid: 9913)

>sp|Q16445|GBRA6_HUMAN Gamma-aminobutyric acid receptor subunit alpha-6 OS=Homo sapiens GN=GABRA6 PE=2 SV=2

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/27 (66%), Positives = 23/27 (85%)

Query: 86  SDIDKYSRIVFPVCFVCFNLMYWIIYL 112
           S ID+YSRI+FPV F  FNL+YW++YL
Sbjct: 415 SKIDQYSRILFPVAFAGFNLVYWVVYL 441

GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel.

Homo sapiens (taxid: 9606)

>sp|Q90845|GBRA6_CHICK Gamma-aminobutyric acid receptor subunit alpha-6 OS=Gallus gallus GN=GABRA6 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/27 (66%), Positives = 23/27 (85%)

Query: 86  SDIDKYSRIVFPVCFVCFNLMYWIIYL 112
           S ID+YSRI+FPV F  FNL+YW++YL
Sbjct: 417 SKIDQYSRILFPVAFAGFNLVYWVVYL 443

GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
377550340	479	GABA-gated chloride channel subunit [Sog	0.953	0.256	0.697	1e-46
998924	276	GABA receptor Rdl 2 subunit [Blattella g	0.961	0.449	0.662	3e-44
998922	256	GABA receptor Rdl 1 subunit [Blattella g	0.961	0.484	0.662	4e-44
242003902	398	Gaba-gated chloride channel, putative [P	0.961	0.311	0.691	1e-43
411147305	475	GABA-gated chloride channel [Oulema oryz	0.976	0.265	0.666	4e-42
328785342	486	PREDICTED: gamma-aminobutyric acid recep	0.922	0.244	0.657	8e-42
380018373	345	PREDICTED: gamma-aminobutyric acid recep	0.922	0.344	0.657	9e-42
110555508	445	GABA-gated chloride channel [Apis mellif	0.922	0.267	0.657	9e-42
110555506	445	GABA-gated chloride channel [Apis mellif	0.922	0.267	0.657	9e-42
383858291	486	PREDICTED: gamma-aminobutyric acid recep	0.922	0.244	0.651	3e-41

>gi|377550340|dbj|BAL63029.1| GABA-gated chloride channel subunit [Sogatella furcifera]

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 104/149 (69%), Positives = 109/149 (73%), Gaps = 26/149 (17%)

Query: 1   MAKRIQMRKNRFMALQKVAEQKKTIEATGH----PGQLGLGHGPP--------------- 41
           MAKRIQMRKNRFMA+QK+AEQK+  EA GH    PG     H P                
Sbjct: 337 MAKRIQMRKNRFMAIQKIAEQKQK-EAAGHVPGVPGGDPADHAPKQTEVRFKVHDPKAHF 395

Query: 42  -GGTLENTINGRSTDEEANAPPGPGGGAHLIHPGKDINKLYGITPSDIDKYSRIVFPVCF 100
            GGTLENTINGR+ DEE + P       HLIHPGKDINKLYGITPSDIDKYSRIVFPVCF
Sbjct: 396 KGGTLENTINGRA-DEEVHLP----APQHLIHPGKDINKLYGITPSDIDKYSRIVFPVCF 450

Query: 101 VCFNLMYWIIYLHISDVVADDLVLLEEDK 129
           VCFNLMYWIIYLHISDVVADDLVLLEEDK
Sbjct: 451 VCFNLMYWIIYLHISDVVADDLVLLEEDK 479

Source: Sogatella furcifera

Species: Sogatella furcifera

Genus: Sogatella

Family: Delphacidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|998924|gb|AAB33734.1| GABA receptor Rdl 2 subunit [Blattella germanica]

 Score =  182 bits (463), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 98/148 (66%), Positives = 105/148 (70%), Gaps = 24/148 (16%)

Query: 1   MAKRIQMRKNRFMALQKVAEQKKTIEATGHPGQLGLG----HGPP--------------- 41
           MAKRIQMRKNRF+A+QK+AEQKK    T H    G      H P                
Sbjct: 134 MAKRIQMRKNRFLAIQKIAEQKKAGMDTAHAPPPGPPGEGDHAPKQTVRFKVHDPKAHSK 193

Query: 42  GGTLENTINGRSTDEEANAPPGPGGGAHLIHPGKDINKLYGITPSDIDKYSRIVFPVCFV 101
           GGTLENTINGR+ DEE  AP       HLIHP KDINKLYGITPSDIDKYSRIVFPVCF+
Sbjct: 194 GGTLENTINGRA-DEEVAAP----APQHLIHPKKDINKLYGITPSDIDKYSRIVFPVCFI 248

Query: 102 CFNLMYWIIYLHISDVVADDLVLLEEDK 129
           CFNLMYWIIYLHISDVVADDLVLL+E+K
Sbjct: 249 CFNLMYWIIYLHISDVVADDLVLLDEEK 276

Source: Blattella germanica

Species: Blattella germanica

Genus: Blattella

Family: Ectobiidae

Order: Blattodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|998922|gb|AAB33733.1| GABA receptor Rdl 1 subunit [Blattella germanica]

 Score =  182 bits (462), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 98/148 (66%), Positives = 105/148 (70%), Gaps = 24/148 (16%)

Query: 1   MAKRIQMRKNRFMALQKVAEQKKTIEATGHPGQLGL----GHGPP--------------- 41
           MAKRIQMRKNRF+A+QK+AEQKK    T H    G      H P                
Sbjct: 114 MAKRIQMRKNRFLAIQKIAEQKKAGMDTAHAPPPGPPGEGDHAPKQTVRFKVHDPKAHSK 173

Query: 42  GGTLENTINGRSTDEEANAPPGPGGGAHLIHPGKDINKLYGITPSDIDKYSRIVFPVCFV 101
           GGTLENTINGR+ DEE  AP       HLIHP KDINKLYGITPSDIDKYSRIVFPVCF+
Sbjct: 174 GGTLENTINGRA-DEEVAAP----APQHLIHPKKDINKLYGITPSDIDKYSRIVFPVCFI 228

Query: 102 CFNLMYWIIYLHISDVVADDLVLLEEDK 129
           CFNLMYWIIYLHISDVVADDLVLL+E+K
Sbjct: 229 CFNLMYWIIYLHISDVVADDLVLLDEEK 256

Source: Blattella germanica

Species: Blattella germanica

Genus: Blattella

Family: Ectobiidae

Order: Blattodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242003902|ref|XP_002422906.1| Gaba-gated chloride channel, putative [Pediculus humanus corporis] gi|212505788|gb|EEB10168.1| Gaba-gated chloride channel, putative [Pediculus humanus corporis]

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 101/146 (69%), Positives = 109/146 (74%), Gaps = 22/146 (15%)

Query: 1   MAKRIQMRKNRFMALQKVAEQKK--TIEATG--HPGQLG---------LGHGPP----GG 43
           MAKRIQMRK+RFMA+QK+AEQK    +EA    HPG +G           H P     GG
Sbjct: 258 MAKRIQMRKSRFMAIQKIAEQKNKANLEAQHGPHPGPIGEQDHSGPKQTVHDPKAHSKGG 317

Query: 44  TLENTINGRSTDEEANAPPGPGGGAHLIHPGKDINKLYGITPSDIDKYSRIVFPVCFVCF 103
           TLENTINGR+ DEEA A P P    HLIHPGKDINKL GITPSDIDKYSRIVFPVCF+CF
Sbjct: 318 TLENTINGRA-DEEA-ATPAP---QHLIHPGKDINKLMGITPSDIDKYSRIVFPVCFICF 372

Query: 104 NLMYWIIYLHISDVVADDLVLLEEDK 129
           NLMYWIIYLHISDVVADDLV L +DK
Sbjct: 373 NLMYWIIYLHISDVVADDLVFLGQDK 398

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|411147305|dbj|BAM66322.1| GABA-gated chloride channel [Oulema oryzae]

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 98/147 (66%), Positives = 105/147 (71%), Gaps = 21/147 (14%)

Query: 1   MAKRIQMRKNRFMALQKVAEQKKTIEATG----HPGQLGLG---HGPP----GGTLENTI 49
           MAKRIQMRKNRF+A+QK+AEQKK     G     P Q  +    H P     GGTLENT+
Sbjct: 332 MAKRIQMRKNRFLAIQKIAEQKKNNVDGGPDDHAPKQTEVRFKVHDPKAHSKGGTLENTV 391

Query: 50  NGRST-------DEEANAPPGPGGGAHLIHPGKDINKLYGITPSDIDKYSRIVFPVCFVC 102
           NG          DEEA  PP P    H+IHP KDINKLYG+TPSDIDKYSRIVFPVCFVC
Sbjct: 392 NGGRGGGGGPPPDEEAANPPIP---QHIIHPNKDINKLYGMTPSDIDKYSRIVFPVCFVC 448

Query: 103 FNLMYWIIYLHISDVVADDLVLLEEDK 129
           FNLMYWIIYLHISDVVADDLVLLE DK
Sbjct: 449 FNLMYWIIYLHISDVVADDLVLLEVDK 475

Source: Oulema oryzae

Species: Oulema oryzae

Genus: Oulema

Family: Chrysomelidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328785342|ref|XP_001120292.2| PREDICTED: gamma-aminobutyric acid receptor subunit beta [Apis mellifera]

 Score =  174 bits (442), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 98/149 (65%), Positives = 102/149 (68%), Gaps = 30/149 (20%)

Query: 1   MAKRIQMRKNRFMALQKVAEQKKTIEAT----GHPGQLGLGHGPP--------------- 41
           MAKRIQMRKNRF   QK+AE  KT        G PG  G  H P                
Sbjct: 348 MAKRIQMRKNRF---QKIAESMKTARENPGPPGVPGDHG-DHAPKQTEVRFKVHDPKAHS 403

Query: 42  -GGTLENTINGRSTDEEANAPPGPGGGAHLIHPGKDINKLYGITPSDIDKYSRIVFPVCF 100
            GGTLENTINGR+ +E A AP       HLIHPGKDINKLYG+TPSDIDKYSRIVFPVCF
Sbjct: 404 KGGTLENTINGRADEEAAPAP------QHLIHPGKDINKLYGMTPSDIDKYSRIVFPVCF 457

Query: 101 VCFNLMYWIIYLHISDVVADDLVLLEEDK 129
           VCFNLMYWIIYLHISDVVADDLVLLEE K
Sbjct: 458 VCFNLMYWIIYLHISDVVADDLVLLEEAK 486

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018373|ref|XP_003693104.1| PREDICTED: gamma-aminobutyric acid receptor subunit beta-like [Apis florea]

 Score =  174 bits (442), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 98/149 (65%), Positives = 102/149 (68%), Gaps = 30/149 (20%)

Query: 1   MAKRIQMRKNRFMALQKVAEQKKTIEAT----GHPGQLGLGHGPP--------------- 41
           MAKRIQMRKNRF   QK+AE  KT        G PG  G  H P                
Sbjct: 207 MAKRIQMRKNRF---QKIAESMKTARENPGPPGVPGDHG-DHAPKQTEVRFKVHDPKAHS 262

Query: 42  -GGTLENTINGRSTDEEANAPPGPGGGAHLIHPGKDINKLYGITPSDIDKYSRIVFPVCF 100
            GGTLENTINGR+ +E A AP       HLIHPGKDINKLYG+TPSDIDKYSRIVFPVCF
Sbjct: 263 KGGTLENTINGRADEEAAPAP------QHLIHPGKDINKLYGMTPSDIDKYSRIVFPVCF 316

Query: 101 VCFNLMYWIIYLHISDVVADDLVLLEEDK 129
           VCFNLMYWIIYLHISDVVADDLVLLEE K
Sbjct: 317 VCFNLMYWIIYLHISDVVADDLVLLEEAK 345

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110555508|gb|ABG75734.1| GABA-gated chloride channel [Apis mellifera]

 Score =  174 bits (441), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 98/149 (65%), Positives = 102/149 (68%), Gaps = 30/149 (20%)

Query: 1   MAKRIQMRKNRFMALQKVAEQKKTIEAT----GHPGQLGLGHGPP--------------- 41
           MAKRIQMRKNRF   QK+AE  KT        G PG  G  H P                
Sbjct: 307 MAKRIQMRKNRF---QKIAESMKTARENPGPPGVPGDHG-DHAPKQTEVRFKVHDPKAHS 362

Query: 42  -GGTLENTINGRSTDEEANAPPGPGGGAHLIHPGKDINKLYGITPSDIDKYSRIVFPVCF 100
            GGTLENTINGR+ +E A AP       HLIHPGKDINKLYG+TPSDIDKYSRIVFPVCF
Sbjct: 363 KGGTLENTINGRADEEAAPAP------QHLIHPGKDINKLYGMTPSDIDKYSRIVFPVCF 416

Query: 101 VCFNLMYWIIYLHISDVVADDLVLLEEDK 129
           VCFNLMYWIIYLHISDVVADDLVLLEE K
Sbjct: 417 VCFNLMYWIIYLHISDVVADDLVLLEEAK 445

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110555506|gb|ABG75733.1| GABA-gated chloride channel [Apis mellifera]

 Score =  174 bits (441), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 98/149 (65%), Positives = 102/149 (68%), Gaps = 30/149 (20%)

Query: 1   MAKRIQMRKNRFMALQKVAEQKKTIEAT----GHPGQLGLGHGPP--------------- 41
           MAKRIQMRKNRF   QK+AE  KT        G PG  G  H P                
Sbjct: 307 MAKRIQMRKNRF---QKIAESMKTARENPGPPGVPGDHG-DHAPKQTEVRFKVHDPKAHS 362

Query: 42  -GGTLENTINGRSTDEEANAPPGPGGGAHLIHPGKDINKLYGITPSDIDKYSRIVFPVCF 100
            GGTLENTINGR+ +E A AP       HLIHPGKDINKLYG+TPSDIDKYSRIVFPVCF
Sbjct: 363 KGGTLENTINGRADEEAAPAP------QHLIHPGKDINKLYGMTPSDIDKYSRIVFPVCF 416

Query: 101 VCFNLMYWIIYLHISDVVADDLVLLEEDK 129
           VCFNLMYWIIYLHISDVVADDLVLLEE K
Sbjct: 417 VCFNLMYWIIYLHISDVVADDLVLLEEAK 445

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858291|ref|XP_003704635.1| PREDICTED: gamma-aminobutyric acid receptor subunit beta-like [Megachile rotundata]

 Score =  172 bits (437), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 97/149 (65%), Positives = 102/149 (68%), Gaps = 30/149 (20%)

Query: 1   MAKRIQMRKNRFMALQKVAEQKKTIEAT----GHPGQLGLGHGPP--------------- 41
           MAKRIQMRKNRF   QK+AE  KT        G PG  G  H P                
Sbjct: 348 MAKRIQMRKNRF---QKIAESMKTARENPGPPGVPGDHG-DHAPKQTEVRFKVHDPKAHS 403

Query: 42  -GGTLENTINGRSTDEEANAPPGPGGGAHLIHPGKDINKLYGITPSDIDKYSRIVFPVCF 100
            GGTLENTINGR+ +E A AP       HLIHPGKDI+KLYG+TPSDIDKYSRIVFPVCF
Sbjct: 404 KGGTLENTINGRADEEAAPAP------QHLIHPGKDISKLYGMTPSDIDKYSRIVFPVCF 457

Query: 101 VCFNLMYWIIYLHISDVVADDLVLLEEDK 129
           VCFNLMYWIIYLHISDVVADDLVLLEE K
Sbjct: 458 VCFNLMYWIIYLHISDVVADDLVLLEEAK 486

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
UNIPROTKB|Q75NA5	576	Rdl "Gamma-aminobutyric acid r	0.480	0.107	0.876	3.1e-35
FB|FBgn0004244	606	Rdl "Resistant to dieldrin" [D	0.472	0.100	0.875	4.3e-35
UNIPROTKB|Q9BLY8	606	Rdl "Gamma-aminobutyric acid r	0.472	0.100	0.875	4.3e-35
UNIPROTKB|I3LH09	196	GLRB "Uncharacterized protein"	0.193	0.127	0.6	4.5e-06
UNIPROTKB|F1RR70	442	GABRA6 "Uncharacterized protei	0.271	0.079	0.583	6.8e-06
WB|WBGene00001512	550	gab-1 [Caenorhabditis elegans	0.209	0.049	0.666	9.3e-06
UNIPROTKB|E1BE96	453	GABRA6 "Uncharacterized protei	0.271	0.077	0.583	1.5e-05
ZFIN|ZDB-GENE-081104-30	491	gabra5 "gamma-aminobutyric aci	0.348	0.091	0.521	1.7e-05
MGI|MGI:95617	463	Gabra5 "gamma-aminobutyric aci	0.255	0.071	0.575	1.7e-05
ZFIN|ZDB-GENE-050417-360	557	zgc:110204 "zgc:110204" [Danio	0.209	0.048	0.592	1.7e-05

UNIPROTKB|Q75NA5 Rdl "Gamma-aminobutyric acid receptor subunit beta" [Musca domestica (taxid:7370)]

 Score = 300 (110.7 bits), Expect = 3.1e-35, Sum P(3) = 3.1e-35
 Identities = 57/65 (87%), Positives = 60/65 (92%)

Query:    68 AHLIHPGK---DINKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVL 124
             AHL+HPGK   DINKL GITPSDIDKYSRIVFPVCFVCFNLMYWIIYLH+SDVVADDLVL
Sbjct:   512 AHLLHPGKVKKDINKLLGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHVSDVVADDLVL 571

Query:   125 LEEDK 129
             L E+K
Sbjct:   572 LGEEK 576

GO:0001505 "regulation of neurotransmitter levels" evidence=ISS

GO:0006836 "neurotransmitter transport" evidence=ISS

GO:0007214 "gamma-aminobutyric acid signaling pathway" evidence=ISS

GO:0008503 "benzodiazepine receptor activity" evidence=ISS

GO:0030285 "integral to synaptic vesicle membrane" evidence=ISS

FB|FBgn0004244 Rdl "Resistant to dieldrin" [Drosophila melanogaster (taxid:7227)]

 Score = 295 (108.9 bits), Expect = 4.3e-35, Sum P(3) = 4.3e-35
 Identities = 56/64 (87%), Positives = 59/64 (92%)

Query:    68 AHLIHPGK---DINKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVL 124
             AHL+HPGK   DINKL GITPSDIDKYSRIVFPVCFVCFNLMYWIIYLH+SDVVADDLVL
Sbjct:   543 AHLLHPGKVKKDINKLLGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHVSDVVADDLVL 602

Query:   125 LEED 128
             L E+
Sbjct:   603 LGEE 606

GO:0005886 "plasma membrane" evidence=ISS

GO:0046682 "response to cyclodiene" evidence=NAS

GO:0004890 "GABA-A receptor activity" evidence=IEA;NAS;TAS

GO:0016021 "integral to membrane" evidence=IEA;NAS

GO:0050805 "negative regulation of synaptic transmission" evidence=IMP

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0009612 "response to mechanical stimulus" evidence=IGI

GO:0030424 "axon" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0090328 "regulation of olfactory learning" evidence=IMP

GO:0030431 "sleep" evidence=IMP

GO:0042749 "regulation of circadian sleep/wake cycle" evidence=IMP

UNIPROTKB|Q9BLY8 Rdl "Gamma-aminobutyric acid receptor subunit beta" [Drosophila simulans (taxid:7240)]

 Score = 295 (108.9 bits), Expect = 4.3e-35, Sum P(3) = 4.3e-35
 Identities = 56/64 (87%), Positives = 59/64 (92%)

Query:    68 AHLIHPGK---DINKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVL 124
             AHL+HPGK   DINKL GITPSDIDKYSRIVFPVCFVCFNLMYWIIYLH+SDVVADDLVL
Sbjct:   543 AHLLHPGKVKKDINKLLGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHVSDVVADDLVL 602

Query:   125 LEED 128
             L E+
Sbjct:   603 LGEE 606

GO:0006811 "ion transport" evidence=ISS

GO:0007268 "synaptic transmission" evidence=ISS

GO:0030594 "neurotransmitter receptor activity" evidence=ISS

UNIPROTKB|I3LH09 GLRB "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 92 (37.4 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
 Identities = 15/25 (60%), Positives = 20/25 (80%)

Query:    88 IDKYSRIVFPVCFVCFNLMYWIIYL 112
             ID Y+R +FP CF+ FN++YW IYL
Sbjct:   172 IDLYARALFPFCFLFFNVIYWSIYL 196

GO:0060013 "righting reflex" evidence=IEA

GO:0060012 "synaptic transmission, glycinergic" evidence=IEA

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0016934 "extracellular-glycine-gated chloride channel activity" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0007340 "acrosome reaction" evidence=IEA

GO:0007218 "neuropeptide signaling pathway" evidence=IEA

GO:0001964 "startle response" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1RR70 GABRA6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 113 (44.8 bits), Expect = 6.8e-06, P = 6.8e-06
 Identities = 21/36 (58%), Positives = 29/36 (80%)

Query:    77 INKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYL 112
             ++ ++G T S ID+YSRI+FPV F  FNL+YWI+YL
Sbjct:   393 LSPVFGDT-SKIDQYSRILFPVAFAGFNLVYWIVYL 427

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0004890 "GABA-A receptor activity" evidence=IEA

WB|WBGene00001512 gab-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 113 (44.8 bits), Expect = 9.3e-06, P = 9.3e-06
 Identities = 18/27 (66%), Positives = 22/27 (81%)

Query:    88 IDKYSRIVFPVCFVCFNLMYWIIYLHI 114
             IDKYSR+VFPVCF+ FNL YW  Y+ +
Sbjct:   522 IDKYSRVVFPVCFIVFNLFYWSYYMMV 548

GO:0006811 "ion transport" evidence=IEA;IDA

GO:0004890 "GABA-A receptor activity" evidence=IEA;IDA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA;IDA

GO:0005216 "ion channel activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0007268 "synaptic transmission" evidence=ISS

GO:0045202 "synapse" evidence=IC

UNIPROTKB|E1BE96 GABRA6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 110 (43.8 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 21/36 (58%), Positives = 28/36 (77%)

Query:    77 INKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYL 112
             ++  +G T S ID+YSRI+FPV F  FNL+YWI+YL
Sbjct:   407 VSLTFGGT-SKIDQYSRILFPVAFAGFNLVYWIVYL 441

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0004890 "GABA-A receptor activity" evidence=IEA

GO:0007214 "gamma-aminobutyric acid signaling pathway" evidence=IEA

GO:0006821 "chloride transport" evidence=IEA

ZFIN|ZDB-GENE-081104-30 gabra5 "gamma-aminobutyric acid (GABA) A receptor, alpha 5" [Danio rerio (taxid:7955)]

 Score = 110 (43.8 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 24/46 (52%), Positives = 28/46 (60%)

Query:    73 PGKDINKLYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVV 118
             P  D  K Y  + S IDK SRIVFPV F  FNL+YW  YL+   V+
Sbjct:   443 PAPDPKKTYN-SVSKIDKMSRIVFPVLFGTFNLVYWATYLNREPVI 487

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004890 "GABA-A receptor activity" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0045202 "synapse" evidence=IEA

MGI|MGI:95617 Gabra5 "gamma-aminobutyric acid (GABA) A receptor, subunit alpha 5" [Mus musculus (taxid:10090)]

 Score = 99 (39.9 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
 Identities = 19/33 (57%), Positives = 23/33 (69%)

Query:    86 SDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVV 118
             S IDK SRIVFP+ F  FNL+YW  YL+   V+
Sbjct:   424 SKIDKMSRIVFPILFGTFNLVYWATYLNREPVI 456

GO:0001662 "behavioral fear response" evidence=IMP

GO:0004890 "GABA-A receptor activity" evidence=ISO

GO:0005216 "ion channel activity" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0005254 "chloride channel activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006821 "chloride transport" evidence=IEA

GO:0007214 "gamma-aminobutyric acid signaling pathway" evidence=IEA

GO:0007268 "synaptic transmission" evidence=ISO

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0008306 "associative learning" evidence=IMP

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030425 "dendrite" evidence=ISO;IDA

GO:0032809 "neuronal cell body membrane" evidence=ISO

GO:0034707 "chloride channel complex" evidence=IEA

GO:0043235 "receptor complex" evidence=ISO

GO:0044297 "cell body" evidence=IDA

GO:0045202 "synapse" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0048666 "neuron development" evidence=IMP

GO:0050811 "GABA receptor binding" evidence=ISO

GO:0060119 "inner ear receptor cell development" evidence=IMP

GO:0060384 "innervation" evidence=IMP

GO:0090102 "cochlea development" evidence=IMP

ZFIN|ZDB-GENE-050417-360 zgc:110204 "zgc:110204" [Danio rerio (taxid:7955)]

 Score = 101 (40.6 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
 Identities = 16/27 (59%), Positives = 23/27 (85%)

Query:    86 SDIDKYSRIVFPVCFVCFNLMYWIIYL 112
             S ID+Y+RI+FPV F  FN++YW++YL
Sbjct:   521 SKIDEYARILFPVSFGAFNMVYWVVYL 547

GO:0005216 "ion channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0004890 "GABA-A receptor activity" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0045202 "synapse" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P25123	GBRB_DROME	No assigned EC number	0.5609	0.6279	0.1336	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	129
pfam02932	228	pfam02932, Neur_chan_memb, Neurotransmitter-gated	6e-09
TIGR00860	459	TIGR00860, LIC, Cation transporter family protein	2e-06

>gnl|CDD|202474 pfam02932, Neur_chan_memb, Neurotransmitter-gated ion-channel transmembrane region

 Score = 51.9 bits (125), Expect = 6e-09
 Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 3/83 (3%)

Query: 29  GHPGQLGLGHGPPGGTLENTINGRSTDEEANAPPGPGGGAHLIHPGKDINKL---YGITP 85
           G  G       P G         R + E   A  G    A  +    + +++   +    
Sbjct: 146 GVGGPETSSGLPGGSGSGLGSPFRLSPELKKALEGVRFIAEHLRSRDEFDEVKEDWKYVA 205

Query: 86  SDIDKYSRIVFPVCFVCFNLMYW 108
             ID+ SR +FP+ FV   L+YW
Sbjct: 206 MVIDRLSRWIFPIAFVLGTLVYW 228

This family includes the four transmembrane helices that form the ion channel. Length = 228

>gnl|CDD|233155 TIGR00860, LIC, Cation transporter family protein

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 13/24 (54%), Positives = 18/24 (75%)

Query: 88  IDKYSRIVFPVCFVCFNLMYWIIY 111
           IDK SR+ FP+ F+ FN+ YW+ Y
Sbjct: 436 IDKLSRMAFPLAFLLFNIGYWMSY 459

The Ligand-gated Ion Channel (LIC) Family of Neurotransmitter Receptors TC 1.A.9)Members of the LIC family of ionotropic neurotransmitter receptors are found only in vertebrate and invertebrate animals. They exhibit receptor specificity for (1)acetylcholine, (2) serotonin, (3) glycine, (4) glutamate and (5) g-aminobutyric acid (GABA). All of these receptor channels are probably hetero- orhomopentameric. The best characterized are the nicotinic acetyl-choline receptors which are pentameric channels of a2bgd subunit composition. All subunits arehomologous. The three dimensional structures of the protein complex in both the open and closed configurations have been solved at 0.9 nm resolution.The channel protein complexes of the LIC family preferentially transport cations or anions depending on the channel (e.g., the acetylcholine receptors are cationselective while glycine receptors are anion selective) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 459

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	129
KOG3643|consensus	459		99.14
KOG3642|consensus	466		99.06
KOG3644|consensus	457		98.88
PF02932	237	Neur_chan_memb: Neurotransmitter-gated ion-channel	98.72
TIGR00860	459	LIC Cation transporter family protein. selective w	97.32

>KOG3643|consensus

Probab=99.14  E-value=3.2e-11  Score=105.43  Aligned_cols=30  Identities=57%  Similarity=1.154  Sum_probs=28.0

Q ss_pred             CchhHHhHHHHHhhHHHHHHHHHHHHHhhh
Q psy13804         84 TPSDIDKYSRIVFPVCFVCFNLMYWIIYLH  113 (129)
Q Consensus        84 ~~~~ID~~SRi~FP~~F~iFNi~YW~~yl~  113 (129)
                      .++.||+|||++||++|++||++||.||++
T Consensus       430 ~~~~IDkySR~~FP~~F~lFNivYW~yy~~  459 (459)
T KOG3643|consen  430 DVSKIDKYSRIVFPLAFSLFNIVYWLYYMY  459 (459)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHHhheeeC
Confidence            388999999999999999999999999964

>KOG3642|consensus

Probab=99.06  E-value=7e-11  Score=103.59  Aligned_cols=40  Identities=50%  Similarity=1.021  Sum_probs=34.4

Q ss_pred             cccCCchhHHhHHHHHhhHHHHHHHHHHHHHhhhcccccc
Q psy13804         80 LYGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVA  119 (129)
Q Consensus        80 ~~~~~~~~ID~~SRi~FP~~F~iFNi~YW~~yl~~~~~~~  119 (129)
                      .......+||+||||+||++|++||++||..||+++.++.
T Consensus       424 ~~~~~vskiD~~sRivFPv~F~~fNlvYW~~yL~~~~~i~  463 (466)
T KOG3642|consen  424 RLYISVSKIDNYSRIVFPVLFILFNLVYWVVYLNLEPIIK  463 (466)
T ss_pred             CcccchhhhhccchhhhHHHHHHHHHHHHhhhccccchhc
Confidence            3345778999999999999999999999999999865543

>KOG3644|consensus

Probab=98.88  E-value=9.1e-10  Score=96.58  Aligned_cols=30  Identities=47%  Similarity=1.049  Sum_probs=28.4

Q ss_pred             CchhHHhHHHHHhhHHHHHHHHHHHHHhhh
Q psy13804         84 TPSDIDKYSRIVFPVCFVCFNLMYWIIYLH  113 (129)
Q Consensus        84 ~~~~ID~~SRi~FP~~F~iFNi~YW~~yl~  113 (129)
                      .+++||++||++||++|++||++||++|+.
T Consensus       427 ~~~~ID~~sr~~FP~~F~~FN~~YW~~y~~  456 (457)
T KOG3644|consen  427 TAERIDRISRFLFPLLFLLFNIIYWTYYLK  456 (457)
T ss_pred             chHHHhHHHHHHHHHHHHHHHHHHhhheEe
Confidence            688999999999999999999999999974

>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]

Probab=98.72  E-value=9e-09  Score=73.42  Aligned_cols=28  Identities=39%  Similarity=0.988  Sum_probs=25.7

Q ss_pred             ccCCchhHHhHHHHHhhHHHHHHHHHHH
Q psy13804         81 YGITPSDIDKYSRIVFPVCFVCFNLMYW  108 (129)
Q Consensus        81 ~~~~~~~ID~~SRi~FP~~F~iFNi~YW  108 (129)
                      +...+..||+++|++||++|++||++||
T Consensus       210 w~~~A~viDR~~~~~F~i~f~~~~i~yw  237 (237)
T PF02932_consen  210 WKFVAMVIDRLFRILFPIAFILFNIVYW  237 (237)
T ss_dssp             HHSTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHhhhC
Confidence            3456889999999999999999999999

Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....

>TIGR00860 LIC Cation transporter family protein

Probab=97.32  E-value=9.2e-05  Score=64.47  Aligned_cols=29  Identities=45%  Similarity=0.970  Sum_probs=26.8

Q ss_pred             CCchhHHhHHHHHhhHHHHHHHHHHHHHh
Q psy13804         83 ITPSDIDKYSRIVFPVCFVCFNLMYWIIY  111 (129)
Q Consensus        83 ~~~~~ID~~SRi~FP~~F~iFNi~YW~~y  111 (129)
                      ..+..||+++|++||++|++||++||.+|
T Consensus       431 ~~a~viDr~~~~~f~~~~~~~~~~~~~~y  459 (459)
T TIGR00860       431 FRAKVIDKLSRMAFPLAFLLFNIGYWMSY  459 (459)
T ss_pred             hccchhhHHHHHHHHHHHHHhhhhheEeC
Confidence            45778999999999999999999999987

selective while glycine receptors are anion selective).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	129
3tlw_A	321	GLR4197 protein, GLIC; Cys-loop receptor family, m	8e-06
3rhw_A	347	Avermectin-sensitive glutamate-gated chloride CHA	1e-05

>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Length = 321

 Score = 42.6 bits (101), Expect = 8e-06
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 88  IDKYSRIVFPVCFVCFNLMYWIIYL 112
           I + SRI FPV F+  N++   ++ 
Sbjct: 295 ITRASRIAFPVVFLLANIILAFLFF 319

>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A* Length = 347

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 88  IDKYSRIVFPVCFVCFNLMYWIIYLH 113
           +D  SR +FPV F  FN++YW  + H
Sbjct: 315 VDLISRALFPVLFFVFNILYWSRFGH 340

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	129
3rhw_A	347	Avermectin-sensitive glutamate-gated chloride CHA	97.38
3tlw_A	321	GLR4197 protein, GLIC; Cys-loop receptor family, m	95.05

>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*

Probab=97.38  E-value=0.0001  Score=59.80  Aligned_cols=30  Identities=40%  Similarity=0.855  Sum_probs=27.0

Q ss_pred             CchhHHhHHHHHhhHHHHHHHHHHHHHhhh
Q psy13804         84 TPSDIDKYSRIVFPVCFVCFNLMYWIIYLH  113 (129)
Q Consensus        84 ~~~~ID~~SRi~FP~~F~iFNi~YW~~yl~  113 (129)
                      .+..+|+++|++||++|++||+.||..|-.
T Consensus       311 ~~~~~~~~~~~~~p~~~~i~n~~~~~~~~~  340 (347)
T 3rhw_A          311 ISKRVDLISRALFPVLFFVFNILYWSRFGH  340 (347)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            467799999999999999999999998853

>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...

Probab=95.05  E-value=0.016  Score=46.27  Aligned_cols=27  Identities=33%  Similarity=0.697  Sum_probs=23.9

Q ss_pred             hhHHhHHHHHhhHHHHHHHHHHHHHhh
Q psy13804         86 SDIDKYSRIVFPVCFVCFNLMYWIIYL  112 (129)
Q Consensus        86 ~~ID~~SRi~FP~~F~iFNi~YW~~yl  112 (129)
                      ..+|++.|++||++|+++|++|+.++.
T Consensus       293 ~~~p~w~r~~fp~~f~~~~~i~~~~~~  319 (321)
T 3tlw_A          293 ASITRASRIAFPVVFLLANIILAFLFF  319 (321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cccChhheeeehHHHHHHHHHHHhhhc
Confidence            489999999999999999999887653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	129
d1oede_	260	Acetylcholine receptor protein, gamma chain {Marbl	95.18
d1oeda_	227	Acetylcholine receptor protein, alpha chain {Marbl	94.29

>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, gamma chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=95.18  E-value=0.0075  Score=44.37  Aligned_cols=27  Identities=19%  Similarity=0.091  Sum_probs=22.7

Q ss_pred             CchhHHhHHHHHhhHHHHHHHHHHHHH
Q psy13804         84 TPSDIDKYSRIVFPVCFVCFNLMYWII  110 (129)
Q Consensus        84 ~~~~ID~~SRi~FP~~F~iFNi~YW~~  110 (129)
                      -+..||++++++||++|+++.+.+|..
T Consensus       225 vA~viDR~~l~vF~~~~~i~t~~i~l~  251 (260)
T d1oede_         225 IGKVIDKACFWIALLLFSIGTLAIFLT  251 (260)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            467899999999999999988877653

>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, alpha chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=94.29  E-value=0.017  Score=41.93  Aligned_cols=32  Identities=16%  Similarity=0.070  Sum_probs=25.8

Q ss_pred             ccCCchhHHhHHHHHhhHHHHHHHHHHHHHhh
Q psy13804         81 YGITPSDIDKYSRIVFPVCFVCFNLMYWIIYL  112 (129)
Q Consensus        81 ~~~~~~~ID~~SRi~FP~~F~iFNi~YW~~yl  112 (129)
                      +..-+..||++++++|+++|++..+..|+.+|
T Consensus       189 W~~vA~viDRi~~~~F~l~~ii~~i~if~~~~  220 (227)
T d1oeda_         189 WKYVAMVIDHILLCVFMLICIIGTVSVFAGRL  220 (227)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34457789999999999999999999888776