Psyllid ID: psy13820

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------
MRQCWAEPPDMRPDFNEVNDLFKTLNQGRGRGHLLLLSLRYKNPHLGLRLKSLLYIDSPRKVNFVDTMFQMLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNRMLPRKVNFVDTMFQMLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNRMLPSSVAEKLKLGMPVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRYCLFGDTVNTASRLESTGAPWRIHLSADTKAKLDQVGDYQLEYRGETELKGKGKMPTYWLLGKKGFYKELPTPPPLGDSHGLDENLILYGRTGPSTTIDLSPTEARSNHSSRSLQTSPGPGRTSQEHAVQLHRSPRNNGKSQTQKTSQNKILSQILSLDSTMEDATRLSAHKKYKYMKQNTFDSCFYIDMRDGYSLET
ccccccccccccccccccHHHHHHHccccccccHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccccEEEEcccccHHHHcccccHHHHHHHHHHHHHHHHHHHHccccEEEcccccEEEEEcccccccccHHHHHHHHHHHHHHHccccccccccccccEEEEcccccccccccccccccccccccHHHHHHHHHHcccccccEEEcHHHHHHHHHcccEEEEEEccEEEEcccEEEEEEEEcccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccHHHHHHHccccHHHHHcccccccccccccccccccccc
cccccccHHHHcccccccccHHHHHHHHHHHHHHHEccccccccccccccccHHcEcccccccccccccccHHcccHHHHHHHHHHHHccHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccccHccEEEEEEEEEEcHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcEEEEEEEccEEEEEEccccccccHHHHHHHHHHHHHHHHcccEEcccccccEEEEEEEccccEEEEEEccccccEEEccccccccHHccccccccEEEEcHHHHHHHHHcccEEEEEccEEEEEcccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccEEEEEccccccccEEEccccccccc
mrqcwaeppdmrpdfneVNDLFKTlnqgrgrgHLLLLSLRyknphlglRLKSLlyidsprkvNFVDTMFQMLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNRMLPRKVNFVDTMFQMLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNRMLPSSVAEklklgmpvdpedfrevTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYmvvgglpvripdhADQIATMALDLLHHsgrfkirhlpytplrlriglhtgpccagvvgltmpryclfgdtvntasrlestgapwrihlsadtkakldqvgdyqleyrgetelkgkgkmptywllgkkgfykelptppplgdshgldenlilygrtgpsttidlsptearsnhssrslqtspgpgrtsqeHAVQLhrsprnngksqtqkTSQNKILSQILSLDSTMEDATRLSAHKKYKYMKqntfdscfyidmrdgyslet
mrqcwaeppdmrpdfNEVNDLFKTLNQGRGRGHLLLLSLRYKNPHLGLRLKSLLYIDSPRKVNFVDTMFQMLEKYSNNLEDLIRERTEQLDIEKKKTeqllnrmlprkvNFVDTMFQMLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNRMLPSSVAEKLKLGMPVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRYCLFGDTVNTASRLESTGAPWRIHLSADTKAKLDQVGDYQLeyrgetelkgkgkmpTYWLLGKKGFYKELPTPPPLGDSHGLDENLILYGRTGPSTTIDLSptearsnhssrslqtspgpgrtSQEHAVQLhrsprnngksqtqktsqNKILSQILSLDSTMEDATRLSAHKKYKYMKQNTFDSCFYIDMRDGYSLET
MRQCWAEPPDMRPDFNEVNDLFKTLNQgrgrghllllslrYKNPHLGLRLKSLLYIDSPRKVNFVDTMFQMLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNRMLPRKVNFVDTMFQMLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNRMLPSSVAEKLKLGMPVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRYCLFGDTVNTASRLESTGAPWRIHLSADTKAKLDQVGDYQLEYRGETELKGKGKMPTYWLLGKKGFYKELPTPPPLGDSHGLDENLILYGRTGPSTTIDLSPTEARSNHSSRSLQTSPGPGRTSQEHAVQLHRSPRNNGKSQTQKTSQNKILSQILSLDSTMEDATRLSAHKKYKYMKQNTFDSCFYIDMRDGYSLET
*****************VNDLFKTLNQGRGRGHLLLLSLRYKNPHLGLRLKSLLYIDSPRKVNFVDTMFQMLEKYSNNLEDLIRE*************QLLNRMLPRKVNFVDTMFQMLEKYSNNLEDLI*******************************LGMPVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRYCLFGDTVNTASRLESTGAPWRIHLSADTKAKLDQVGDYQLEYRGETELKGKGKMPTYWLLGKKGFYKEL***********LDENLILYG********************************************************************************HKKYKYMKQNTFDSCFYIDMRD******
*RQCWAEPPDMR*****VNDLFKTLNQGRGRGHLLLLSLRYKNPHLG*****L**IDSPRKVNFVDTMFQMLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNRMLPRKVNFVDTMFQMLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNRMLPSSVAEKLKLGMPVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRYCLFGDTVNTASRLESTGAPWRIHLSADTKAKLDQVGDYQLEYRGETELKGKGKMPTYWLLGKKGFY*******************************************************************************************************************DSCFYIDMRD******
********PDMRPDFNEVNDLFKTLNQGRGRGHLLLLSLRYKNPHLGLRLKSLLYIDSPRKVNFVDTMFQMLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNRMLPRKVNFVDTMFQMLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNRMLPSSVAEKLKLGMPVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRYCLFGDTVNTASRLESTGAPWRIHLSADTKAKLDQVGDYQLEYRGETELKGKGKMPTYWLLGKKGFYKELPTPPPLGDSHGLDENLILYGRTGPSTTIDLS***********************************************NKILSQILSLDSTMEDATRLSAHKKYKYMKQNTFDSCFYIDMRDGYSLET
*RQCWAEPPDMRPDFNEVNDLFKTLNQGRGRGHLLLLSLRYKNPHLGLRLKSLLYIDSPRKVNFVDTMFQMLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNRMLPRKVNFVDTMFQMLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNRMLPSSVAEKLKLGMPVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRYCLFGDTVNTASRLESTGAPWRIHLSADTKAKLDQVGDYQLEYRGETELKGKGKMPTYWLLGKK*F************************************************************************************ILSQILSLDSTMEDATRLSAHKKYKYMKQNTFDSCFYIDMRDGY*L**
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRQCWAEPPDMRPDFNEVNDLFKTLNQGRGRGHLLLLSLRYKNPHLGLRLKSLLYIDSPRKVNFxxxxxxxxxxxxxxxxxxxxxxxxxxxxEKKKTEQLLNRMLPRKVNFxxxxxxxxxxxxxxxxxxxxxxxxxxxxEKKKTEQLLNRMLPSSVAEKLKLGMPVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRYCLFGDTVNTASRLESTGAPWRIHLSADTKAKLDQVGDYQLEYRGETELKGKGKMPTYWLLGKKGFYKELPTPPPLGDSHGLDENLILYGRTGPSTTIDLSPTEARSNHSSRSLQTSPGPGRTSQEHAVQLHRSPRNNGKSQTQKTSQNKILSQILSLDSTMEDATRLSAHKKYKYMKQNTFDSCFYIDMRDGYSLET
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query487 2.2.26 [Sep-21-2011]
P518421108 Retinal guanylyl cyclase yes N/A 0.544 0.239 0.660 1e-98
O027401103 Retinal guanylyl cyclase yes N/A 0.544 0.240 0.656 3e-98
Q5SDA51108 Retinal guanylyl cyclase yes N/A 0.544 0.239 0.656 3e-98
P518411108 Retinal guanylyl cyclase yes N/A 0.544 0.239 0.653 1e-97
P527851108 Guanylyl cyclase GC-E OS= no N/A 0.542 0.238 0.644 1e-96
P518401108 Guanylyl cyclase GC-E OS= no N/A 0.542 0.238 0.641 3e-96
O191791109 Retinal guanylyl cyclase no N/A 0.601 0.264 0.505 1e-92
Q028461103 Retinal guanylyl cyclase no N/A 0.544 0.240 0.640 1e-91
P552031110 Retinal guanylyl cyclase no N/A 0.544 0.238 0.640 3e-91
P518391110 Olfactory guanylyl cyclas no N/A 0.525 0.230 0.627 5e-85
>sp|P51842|GUC2F_RAT Retinal guanylyl cyclase 2 OS=Rattus norvegicus GN=Gucy2f PE=2 SV=1 Back     alignment and function desciption
 Score =  360 bits (924), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 179/271 (66%), Positives = 212/271 (78%), Gaps = 6/271 (2%)

Query: 107  RKVNFVDTMFQMLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNRMLPSSVAEKLKLGMPV 166
            +K N +D+M +MLE+YS+NLEDLIRERTE+L+IEK+KTE+LL +MLP SVAE LK G  V
Sbjct: 816  KKTNIIDSMLRMLEQYSSNLEDLIRERTEELEIEKQKTEKLLTQMLPPSVAESLKKGCTV 875

Query: 167  DPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAY 226
            +PE F  VT+YFSDIVGFTTISA S P EVVDLLNDLYT FDA I +++VYKVETIGDAY
Sbjct: 876  EPEGFDLVTLYFSDIVGFTTISAMSEPIEVVDLLNDLYTLFDAIIGSHDVYKVETIGDAY 935

Query: 227  MVVGGLPVRIPD-HADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAGVVGL 285
            MV  GLP R    HA +IA M+LD+L   G FK+RH+P  P+R+RIGLHTGP  AGVVGL
Sbjct: 936  MVASGLPKRNGSRHAAEIANMSLDILSSVGTFKMRHMPEVPVRIRIGLHTGPVVAGVVGL 995

Query: 286  TMPRYCLFGDTVNTASRLESTGAPWRIHLSADTKAKLDQVGD-YQLEYRGETELKGKGKM 344
            TMPRYCLFGDTVNTASR+ESTG P+RIH+S  T   L  + + Y++E RG TELKGKG  
Sbjct: 996  TMPRYCLFGDTVNTASRMESTGLPYRIHVSLSTVTILRTLSEGYEVELRGRTELKGKGTE 1055

Query: 345  PTYWLLGKKGFYKELPTPPPLGD----SHGL 371
             T+WL+GKKGF K LP PPP+G      HGL
Sbjct: 1056 ETFWLVGKKGFTKPLPVPPPVGKDGQVGHGL 1086
Probably plays a specific functional role in the rods and/or cones of photoreceptors. It may be the enzyme involved in the resynthesis of cGMP required for recovery of the dark state after phototransduction.
Rattus norvegicus (taxid: 10116)
EC: 4EC: .EC: 6EC: .EC: 1EC: .EC: 2
>sp|O02740|GUC2F_BOVIN Retinal guanylyl cyclase 2 OS=Bos taurus GN=GUCY2F PE=2 SV=1 Back     alignment and function description
>sp|Q5SDA5|GUC2F_MOUSE Retinal guanylyl cyclase 2 OS=Mus musculus GN=Gucy2f PE=2 SV=1 Back     alignment and function description
>sp|P51841|GUC2F_HUMAN Retinal guanylyl cyclase 2 OS=Homo sapiens GN=GUCY2F PE=2 SV=2 Back     alignment and function description
>sp|P52785|GUC2E_MOUSE Guanylyl cyclase GC-E OS=Mus musculus GN=Gucy2e PE=2 SV=2 Back     alignment and function description
>sp|P51840|GUC2E_RAT Guanylyl cyclase GC-E OS=Rattus norvegicus GN=Gucy2e PE=1 SV=1 Back     alignment and function description
>sp|O19179|GUC2D_CANFA Retinal guanylyl cyclase 1 OS=Canis familiaris GN=GUCY2D PE=2 SV=1 Back     alignment and function description
>sp|Q02846|GUC2D_HUMAN Retinal guanylyl cyclase 1 OS=Homo sapiens GN=GUCY2D PE=1 SV=2 Back     alignment and function description
>sp|P55203|GUC2D_BOVIN Retinal guanylyl cyclase 1 OS=Bos taurus GN=GUCY2D PE=1 SV=1 Back     alignment and function description
>sp|P51839|GUC2D_RAT Olfactory guanylyl cyclase GC-D OS=Rattus norvegicus GN=Gucy2d PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query487
383863186 1392 PREDICTED: retinal guanylyl cyclase 2-li 0.613 0.214 0.679 1e-143
340720297 1423 PREDICTED: hypothetical protein LOC10064 0.613 0.210 0.679 1e-143
350417566 1404 PREDICTED: hypothetical protein LOC10074 0.613 0.212 0.679 1e-143
345491231 911 PREDICTED: retinal guanylyl cyclase 2-li 0.591 0.316 0.691 1e-139
307182371 1382 Retinal guanylyl cyclase 2 [Camponotus f 0.605 0.213 0.673 1e-139
332019199 1379 Retinal guanylyl cyclase 2 [Acromyrmex e 0.605 0.213 0.676 1e-139
328792974 703 PREDICTED: guanylyl cyclase GC-E-like [A 0.613 0.425 0.654 1e-139
307207168 1377 Retinal guanylyl cyclase 2 [Harpegnathos 0.601 0.212 0.671 1e-138
189237324 1444 PREDICTED: similar to CG34357 CG34357-PA 0.605 0.204 0.671 1e-137
270008090 1502 hormone receptor 83 [Tribolium castaneum 0.605 0.196 0.671 1e-137
>gi|383863186|ref|XP_003707063.1| PREDICTED: retinal guanylyl cyclase 2-like [Megachile rotundata] Back     alignment and taxonomy information
 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 256/377 (67%), Positives = 279/377 (74%), Gaps = 78/377 (20%)

Query: 1    MRQCWAEPPDMRPDFNEVNDLFKTLNQGRGRGHLLLLSLRYKNPHLGLRLKSLLYIDSPR 60
            MRQCWAE  DMRPDF++V+DLFK LN GR                               
Sbjct: 848  MRQCWAEAADMRPDFDDVHDLFKKLNHGR------------------------------- 876

Query: 61   KVNFVDTMFQMLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNRMLPRKVNFVDTMFQMLE 120
            KVNFVDTMFQMLEKYSNNLE+LIRERTEQLD+EKKKTEQLLNRMLP              
Sbjct: 877  KVNFVDTMFQMLEKYSNNLEELIRERTEQLDMEKKKTEQLLNRMLP-------------- 922

Query: 121  KYSNNLEDLIRERTEQLDIEKKKTEQLLNRMLPSSVAEKLKLGMPVDPEDFREVTIYFSD 180
                                             SSVAEKLKLGMPVDPE+FREVTIYFSD
Sbjct: 923  ---------------------------------SSVAEKLKLGMPVDPEEFREVTIYFSD 949

Query: 181  IVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHA 240
            IVGFTTISA STPF+VVDLLNDLYTCFDATINAY VYKVETIGDAYMVVGG PVRIPDHA
Sbjct: 950  IVGFTTISARSTPFQVVDLLNDLYTCFDATINAYTVYKVETIGDAYMVVGGCPVRIPDHA 1009

Query: 241  DQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRYCLFGDTVNTA 300
             QIATMALDLLH SG+FK++HLP T LRLRIGLHTGPCCAGVVGLTMPRYCLFGDTVNTA
Sbjct: 1010 SQIATMALDLLHQSGKFKLKHLPNTQLRLRIGLHTGPCCAGVVGLTMPRYCLFGDTVNTA 1069

Query: 301  SRLESTGAPWRIHLSADTKAKLDQVGDYQLEYRGETELKGKGKMPTYWLLGKKGFYKELP 360
            SR+ESTGAPWRIHLS  T+ +L QVG Y +EYRG TE+KGKG+MPTYWLLGK+GF KELP
Sbjct: 1070 SRMESTGAPWRIHLSQATRDRLTQVGGYHIEYRGPTEVKGKGRMPTYWLLGKQGFDKELP 1129

Query: 361  TPPPLGDSHGLDENLIL 377
             PPPLG++HGL+E+L++
Sbjct: 1130 KPPPLGENHGLNESLMI 1146

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|340720297|ref|XP_003398577.1| PREDICTED: hypothetical protein LOC100642611 [Bombus terrestris] Back     alignment and taxonomy information
>gi|350417566|ref|XP_003491485.1| PREDICTED: hypothetical protein LOC100741981 [Bombus impatiens] Back     alignment and taxonomy information
>gi|345491231|ref|XP_001607934.2| PREDICTED: retinal guanylyl cyclase 2-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307182371|gb|EFN69634.1| Retinal guanylyl cyclase 2 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|332019199|gb|EGI59709.1| Retinal guanylyl cyclase 2 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|328792974|ref|XP_003251808.1| PREDICTED: guanylyl cyclase GC-E-like [Apis mellifera] Back     alignment and taxonomy information
>gi|307207168|gb|EFN84958.1| Retinal guanylyl cyclase 2 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|189237324|ref|XP_972984.2| PREDICTED: similar to CG34357 CG34357-PA [Tribolium castaneum] Back     alignment and taxonomy information
>gi|270008090|gb|EFA04538.1| hormone receptor 83 [Tribolium castaneum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query487
FB|FBgn0085386 1681 CG34357 [Drosophila melanogast 0.634 0.183 0.709 4e-124
UNIPROTKB|O191791109 GUCY2D "Retinal guanylyl cycla 0.544 0.238 0.648 2e-98
RGD|6204391108 Gucy2f "guanylate cyclase 2F" 0.544 0.239 0.660 8.7e-98
UNIPROTKB|Q028461103 GUCY2D "Retinal guanylyl cycla 0.544 0.240 0.648 1.1e-97
UNIPROTKB|F1MY401110 GUCY2D "Guanylate cyclase" [Bo 0.544 0.238 0.644 1.4e-97
MGI|MGI:1051191108 Gucy2f "guanylate cyclase 2f" 0.544 0.239 0.656 1.8e-97
UNIPROTKB|P518411108 GUCY2F "Retinal guanylyl cycla 0.540 0.237 0.661 2.9e-97
UNIPROTKB|O027401103 GUCY2F "Retinal guanylyl cycla 0.544 0.240 0.656 2.9e-97
UNIPROTKB|F1SSZ11105 F1SSZ1 "Guanylate cyclase" [Su 0.540 0.238 0.650 2.9e-97
UNIPROTKB|I3LJL11107 LOC100625536 "Guanylate cyclas 0.540 0.237 0.650 2.9e-97
FB|FBgn0085386 CG34357 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1139 (406.0 bits), Expect = 4.0e-124, Sum P(2) = 4.0e-124
 Identities = 227/320 (70%), Positives = 263/320 (82%)

Query:   107 RKVNFVDTMFQMLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNRMLPSSVAEKLKLGMPV 166
             RKVNFVDTMFQMLEKYSNNLE+LIRERTEQLDIE+KKTEQLLNRMLPSSVAEKLK+G+ V
Sbjct:  1042 RKVNFVDTMFQMLEKYSNNLEELIRERTEQLDIERKKTEQLLNRMLPSSVAEKLKMGLAV 1101

Query:   167 DPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAY 226
             DPE+F +VTIYFSDIVGFTTI+A+ +P +VVDLLNDLYT FDATINAYNVYKVETIGDAY
Sbjct:  1102 DPEEFSDVTIYFSDIVGFTTIAAHCSPVQVVDLLNDLYTIFDATINAYNVYKVETIGDAY 1161

Query:   227 MVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAGVVGLT 286
             MVV GLPV+IPDHA+QIATMALDLLH SGRF ++HLP  PL+LRIGLHTGPCCAGVVGLT
Sbjct:  1162 MVVSGLPVKIPDHAEQIATMALDLLHQSGRFNVKHLPGVPLQLRIGLHTGPCCAGVVGLT 1221

Query:   287 MPRYCLFGDTVNTASRLESTGAPWRIHLSADTKAKLDQVGDYQLEYRGETELKGKGKMPT 346
             MPRYCLFGDTVNTASR+ESTG+ WRIH+S +T+ +LD  G Y +E RG  ++KGKG M T
Sbjct:  1222 MPRYCLFGDTVNTASRMESTGSSWRIHMSQETRDRLDARGGYAIEPRGLIDIKGKGMMNT 1281

Query:   347 YWLLGKKGFYKELPTPPPLGDSHGLDENLILYGRTGPSTTIDLSPTEARSNHSSRSLQTS 406
             +WLLGKKGF K LP PPP+G    LDE+LI   R   S T+     ++R++ +  S Q+S
Sbjct:  1282 FWLLGKKGFDKPLPAPPPIG----LDESLI---RN--SITLKAQANKSRTSTNPSSSQSS 1332

Query:   407 PGPGRTSQEHAVQLHRSPRN 426
                G  S E  V++   P N
Sbjct:  1333 SLAGE-SVEVKVEI-TPPTN 1350
GO:0005575 "cellular_component" evidence=ND
GO:0004672 "protein kinase activity" evidence=IEA
GO:0035556 "intracellular signal transduction" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0006468 "protein phosphorylation" evidence=IEA
GO:0004383 "guanylate cyclase activity" evidence=ISS
GO:0006182 "cGMP biosynthetic process" evidence=ISS
UNIPROTKB|O19179 GUCY2D "Retinal guanylyl cyclase 1" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|620439 Gucy2f "guanylate cyclase 2F" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q02846 GUCY2D "Retinal guanylyl cyclase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MY40 GUCY2D "Guanylate cyclase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:105119 Gucy2f "guanylate cyclase 2f" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|P51841 GUCY2F "Retinal guanylyl cyclase 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|O02740 GUCY2F "Retinal guanylyl cyclase 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SSZ1 F1SSZ1 "Guanylate cyclase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LJL1 LOC100625536 "Guanylate cyclase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O02740GUC2F_BOVIN4, ., 6, ., 1, ., 20.65680.54410.2402yesN/A
P51841GUC2F_HUMAN4, ., 6, ., 1, ., 20.65310.54410.2391yesN/A
P51842GUC2F_RAT4, ., 6, ., 1, ., 20.66050.54410.2391yesN/A
Q5SDA5GUC2F_MOUSE4, ., 6, ., 1, ., 20.65680.54410.2391yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer4.6.1.20.737
3rd Layer4.6.10.691

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query487
smart00044194 smart00044, CYCc, Adenylyl- / guanylyl cyclase, ca 7e-88
pfam00211184 pfam00211, Guanylate_cyc, Adenylate and Guanylate 3e-85
cd07302177 cd07302, CHD, cyclase homology domain 3e-75
COG2114227 COG2114, CyaA, Adenylate cyclase, family 3 (some p 1e-39
cd07556133 cd07556, Nucleotidyl_cyc_III, Class III nucleotidy 1e-36
pfam07701209 pfam07701, HNOBA, Heme NO binding associated 3e-05
TIGR03903 1266 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclas 0.003
>gnl|CDD|214485 smart00044, CYCc, Adenylyl- / guanylyl cyclase, catalytic domain Back     alignment and domain information 
 Score =  267 bits (684), Expect = 7e-88
 Identities = 104/186 (55%), Positives = 135/186 (72%), Gaps = 3/186 (1%)

Query: 139 IEKKKTEQLLNRMLPSSVAEKLKLG-MPVDPEDFREVTIYFSDIVGFTTISAYSTPFEVV 197
            EKKKT++LL+++LP+SVAE+LK G  PV  E +  VTI FSDIVGFT++ + STP +VV
Sbjct: 1   EEKKKTDRLLDQLLPASVAEQLKRGGSPVPAESYDNVTILFSDIVGFTSLCSTSTPEQVV 60

Query: 198 DLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVR-IPDHADQIATMALDLLHHSGR 256
           +LLNDLY+ FD  I+ +  YKV+TIGDAYMV  GLP   + DHA+ IA  ALD++     
Sbjct: 61  NLLNDLYSRFDQIIDRHGGYKVKTIGDAYMVASGLPEEALVDHAELIADEALDMVEELKT 120

Query: 257 FKIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRYCLFGDTVNTASRLESTGAPWRIHLSA 316
             ++H     LR+RIG+HTGP  AGVVG+ MPRYCLFGDTVN ASR+ES G P +I +S 
Sbjct: 121 VLVQH-REEGLRVRIGIHTGPVVAGVVGIRMPRYCLFGDTVNLASRMESAGDPGQIQVSE 179

Query: 317 DTKAKL 322
           +T + L
Sbjct: 180 ETYSLL 185

Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes. Length = 194
>gnl|CDD|201086 pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase catalytic domain Back     alignment and domain information
>gnl|CDD|143636 cd07302, CHD, cyclase homology domain Back     alignment and domain information
>gnl|CDD|225025 COG2114, CyaA, Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|143637 cd07556, Nucleotidyl_cyc_III, Class III nucleotidyl cyclases Back     alignment and domain information
>gnl|CDD|219526 pfam07701, HNOBA, Heme NO binding associated Back     alignment and domain information
>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 487
KOG1023|consensus484 100.0
KOG4171|consensus671 100.0
PF00211184 Guanylate_cyc: Adenylate and Guanylate cyclase cat 100.0
smart00044194 CYCc Adenylyl- / guanylyl cyclase, catalytic domai 100.0
KOG3619|consensus 867 100.0
COG2114227 CyaA Adenylate cyclase, family 3 (some proteins co 99.98
KOG3618|consensus 1318 99.98
cd07302177 CHD cyclase homology domain. Catalytic domains of 99.97
KOG3619|consensus867 99.97
KOG3618|consensus1318 99.95
cd07556133 Nucleotidyl_cyc_III Class III nucleotidyl cyclases 99.34
PF07701219 HNOBA: Heme NO binding associated; InterPro: IPR01 96.89
KOG4721|consensus904 94.97
PF05165246 GGDN: GGDN family; InterPro: IPR007839 GTP cyclohy 94.37
PF00990161 GGDEF: GGDEF domain; InterPro: IPR000160 This doma 94.25
smart00267163 GGDEF diguanylate cyclase. Diguanylate cyclase, pr 93.85
PRK10245366 adrA diguanylate cyclase AdrA; Provisional 92.99
KOG0192|consensus362 92.82
PF10851116 DUF2652: Protein of unknown function (DUF2652) ; I 92.62
PRK09966407 putative inner membrane diguanylate cyclase; Provi 92.61
cd01949158 GGDEF Diguanylate-cyclase (DGC) or GGDEF domain. D 92.0
PRK09894296 diguanylate cyclase; Provisional 91.37
COG2429250 Archaeal GTP cyclohydrolase III [Nucleotide transp 91.12
PRK11059640 regulatory protein CsrD; Provisional 91.06
COG2199181 c-di-GMP synthetase (diguanylate cyclase, GGDEF do 90.97
PF07701219 HNOBA: Heme NO binding associated; InterPro: IPR01 90.88
cd06635317 STKc_TAO1 Catalytic domain of the Protein Serine/T 90.55
KOG4278|consensus 1157 90.15
TIGR00254165 GGDEF diguanylate cyclase (GGDEF) domain. The GGDE 89.79
KOG4257|consensus974 88.22
KOG1095|consensus1025 87.77
TIGR02577482 cas_TM1794_Crm2 CRISPR-associated protein, Crm2 fa 87.31
PRK02240254 GTP cyclohydrolase III; Provisional 86.81
PF06327101 DUF1053: Domain of Unknown Function (DUF1053); Int 86.2
COG3706435 PleD Response regulator containing a CheY-like rec 86.02
PRK11829660 biofilm formation regulator HmsP; Provisional 84.7
PRK13561651 putative diguanylate cyclase; Provisional 83.26
PRK11359799 cyclic-di-GMP phosphodiesterase; Provisional 83.21
PRK10060663 RNase II stability modulator; Provisional 81.97
KOG0199|consensus 1039 80.81
cd05108316 PTKc_EGFR Catalytic domain of the Protein Tyrosine 80.29
>KOG1023|consensus Back     alignment and domain information 
Probab=100.00  E-value=9.1e-56  Score=466.17  Aligned_cols=280  Identities=58%  Similarity=0.944  Sum_probs=261.4

Q ss_pred             CccccCCCCCCCCChhhHHHHhhcccCCCCCccchhhcccccCCccccccccceeecCCcccchhHHHHHHHHHHHHhHH
Q psy13820          1 MRQCWAEPPDMRPDFNEVNDLFKTLNQGRGRGHLLLLSLRYKNPHLGLRLKSLLYIDSPRKVNFVDTMFQMLEKYSNNLE   80 (487)
Q Consensus         1 ~~~cw~~~p~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~d~m~~mle~y~~~LE   80 (487)
                      |++||.|+|++||+|..|+..++.++.++                             ..|.|++|+|++|||+|+++||
T Consensus       200 ~~~cw~e~P~~rPs~~~i~~~~~~~~~~~-----------------------------~~~~nl~D~m~~~le~Y~~nLe  250 (484)
T KOG1023|consen  200 VARCWEEIPEKRPSIEQIRSKLLTINKGG-----------------------------SSKGNLMDSLFRMLESYADNLE  250 (484)
T ss_pred             HHHhcccChhhCccHHHHHhhhhhhcccc-----------------------------cccchhHHHHHHHHHHHHhhhH
Confidence            47999999999999999999999998764                             1467999999999999999888


Q ss_pred             HHHHHHHHHhHHhhHHHHHHHHhhcCCCccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHH
Q psy13820         81 DLIRERTEQLDIEKKKTEQLLNRMLPRKVNFVDTMFQMLEKYSNNLEDLIRERTEQLDIEKKKTEQLLNRMLPSSVAEKL  160 (487)
Q Consensus        81 ~lVee~~~~L~~ek~~te~ll~~mlp~~v~~vd~m~~~le~~s~~le~~i~er~~~l~~ek~k~~~LL~~~LP~~va~~L  160 (487)
                      .+|+||+.                                               ++.++++|.+.||.++||+.|++.+
T Consensus       251 ~~v~eRt~-----------------------------------------------~l~~e~~k~d~LL~~mLP~~VA~~l  283 (484)
T KOG1023|consen  251 KLVDERTA-----------------------------------------------ELEEEKKKTDTLLGQMLPKSVAESL  283 (484)
T ss_pred             HHHHHHHH-----------------------------------------------HHHHHHHHHHHHHHHhcCHHHhhHh
Confidence            88877666                                               3556666777888888888999999


Q ss_pred             hcCCCCCCCCceeEEEEEEecCCchhhhccCCchhHHHHHHHHHHHHHHhhhhcCcEEEeeeCCEEEEEecCCCCCc-hh
Q psy13820        161 KLGMPVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIP-DH  239 (487)
Q Consensus       161 ~~g~~~~~~~~~~vTVLF~DIvgFT~ls~~~~p~evv~lLn~~~~~~~~ii~~~gG~~vk~iGD~~mavfGlp~~~~-~~  239 (487)
                      +.|..+.++.+.+|||+|+||+|||.++..++|.+++.+||++|+.|+.+|++|++|+|+++||+||+++|+|..++ .|
T Consensus       284 k~G~~v~pe~~~~vti~fsDiv~fT~l~~~~~P~~vv~~lNdlyt~Fd~ii~~~d~yKVetiGDaYmvvSglp~~n~~~H  363 (484)
T KOG1023|consen  284 KLGKTVDPESFDSVTIYFSDIVGFTVLSSNSTPIQVVTLLNDLYTTFDRIIDKHDVYKVETIGDAYMVVSGLPIRNGYRH  363 (484)
T ss_pred             hcCCcCCccccCceeeeeHHHHHHHHHHhcCCCceeeeeccchHHhhhhcccccCCeeEeccCcceeecccCceecHhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887 59


Q ss_pred             HHHHHHHHHHHHHHhhhhhhcCCCCCCeEEEEeeeecceEEeEeCCCCCcceeeCcHHHHHHHHHhcCCCCcEEecHHHH
Q psy13820        240 ADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRYCLFGDTVNTASRLESTGAPWRIHLSADTK  319 (487)
Q Consensus       240 a~~a~~~Al~i~~~l~~~~~~~~~~~~l~vRIGIhtG~Vv~GvvG~~~~~y~v~GdtVN~AsRLes~a~~g~IlVSe~t~  319 (487)
                      +.+++.++++++..+..+..+|.+..++++|||+|+|||++||||.++|+||+||||||+|+|||+.+. +.|++|++++
T Consensus       364 ~~eia~msl~~~~~~~~f~i~H~P~~~l~iRig~~sg~~~agVvgl~mPRYclFgDtvn~AsrMes~G~-~~i~~s~~~~  442 (484)
T KOG1023|consen  364 AREIASMALGLRSFLESFSLPHRPWEKLRLRIGFHSGPVVAGVVGLKMPRYCLFGDTVNTASRMESNGK-LMIHLSEEAK  442 (484)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCCCchhhheeeccccCCceecccccCCCcccchhhHHHHHhhhhhcCC-eEEEecHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999 9999999999


Q ss_pred             HHhhcCCCeeEEEeceEEecCcCcceEEEEecccCCCC
Q psy13820        320 AKLDQVGDYQLEYRGETELKGKGKMPTYWLLGKKGFYK  357 (487)
Q Consensus       320 ~~L~~~~~f~~~~~G~i~lKGkg~~~ty~l~~~~~~~~  357 (487)
                      ..|...+.|..+.+|.+.+||||.+.|||+.|......
T Consensus       443 ~~l~~~~~~~~e~rG~v~~kgkg~~~t~wl~g~~~~~~  480 (484)
T KOG1023|consen  443 NLLTERPQFETEERGLVELKGKGVMSTYWLLGESSKSR  480 (484)
T ss_pred             HHHHhcCceeeeccCcEEeecCceeeeEEeccCccccc
Confidence            99986679999999999999999999999999877543

>KOG4171|consensus Back     alignment and domain information
>PF00211 Guanylate_cyc: Adenylate and Guanylate cyclase catalytic domain; InterPro: IPR001054 Guanylate cyclases (4 Back     alignment and domain information
>smart00044 CYCc Adenylyl- / guanylyl cyclase, catalytic domain Back     alignment and domain information
>KOG3619|consensus Back     alignment and domain information
>COG2114 CyaA Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms] Back     alignment and domain information
>KOG3618|consensus Back     alignment and domain information
>cd07302 CHD cyclase homology domain Back     alignment and domain information
>KOG3619|consensus Back     alignment and domain information
>KOG3618|consensus Back     alignment and domain information
>cd07556 Nucleotidyl_cyc_III Class III nucleotidyl cyclases Back     alignment and domain information
>PF07701 HNOBA: Heme NO binding associated; InterPro: IPR011645 The HNOBA (Haem NO Binding) domain is found associated with the HNOB domain and IPR001054 from INTERPRO in soluble cyclases and signalling proteins Back     alignment and domain information
>KOG4721|consensus Back     alignment and domain information
>PF05165 GGDN: GGDN family; InterPro: IPR007839 GTP cyclohydrolase III catalyses the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP Back     alignment and domain information
>PF00990 GGDEF: GGDEF domain; InterPro: IPR000160 This domain appears to be ubiquitous in bacteria and is often linked to a regulatory domain, such as a phosphorylation receiver or oxygen sensing domain Back     alignment and domain information
>smart00267 GGDEF diguanylate cyclase Back     alignment and domain information
>PRK10245 adrA diguanylate cyclase AdrA; Provisional Back     alignment and domain information
>KOG0192|consensus Back     alignment and domain information
>PF10851 DUF2652: Protein of unknown function (DUF2652) ; InterPro: IPR020503 This entry contains proteins with no known function Back     alignment and domain information
>PRK09966 putative inner membrane diguanylate cyclase; Provisional Back     alignment and domain information
>cd01949 GGDEF Diguanylate-cyclase (DGC) or GGDEF domain Back     alignment and domain information
>PRK09894 diguanylate cyclase; Provisional Back     alignment and domain information
>COG2429 Archaeal GTP cyclohydrolase III [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK11059 regulatory protein CsrD; Provisional Back     alignment and domain information
>COG2199 c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal transduction mechanisms] Back     alignment and domain information
>PF07701 HNOBA: Heme NO binding associated; InterPro: IPR011645 The HNOBA (Haem NO Binding) domain is found associated with the HNOB domain and IPR001054 from INTERPRO in soluble cyclases and signalling proteins Back     alignment and domain information
>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1 Back     alignment and domain information
>KOG4278|consensus Back     alignment and domain information
>TIGR00254 GGDEF diguanylate cyclase (GGDEF) domain Back     alignment and domain information
>KOG4257|consensus Back     alignment and domain information
>KOG1095|consensus Back     alignment and domain information
>TIGR02577 cas_TM1794_Crm2 CRISPR-associated protein, Crm2 family Back     alignment and domain information
>PRK02240 GTP cyclohydrolase III; Provisional Back     alignment and domain information
>PF06327 DUF1053: Domain of Unknown Function (DUF1053); InterPro: IPR009398 Cyclic AMP (cAMP) is a ubiquitous signalling molecule which mediates many cellular processes by activating cAMP-dependent kinases and also inducing protein-protein interactions Back     alignment and domain information
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms] Back     alignment and domain information
>PRK11829 biofilm formation regulator HmsP; Provisional Back     alignment and domain information
>PRK13561 putative diguanylate cyclase; Provisional Back     alignment and domain information
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional Back     alignment and domain information
>PRK10060 RNase II stability modulator; Provisional Back     alignment and domain information
>KOG0199|consensus Back     alignment and domain information
>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query487
3et6_A190 The Crystal Structure Of The Catalytic Domain Of A 2e-41
3et6_B190 The Crystal Structure Of The Catalytic Domain Of A 3e-41
3uvj_A225 Crystal Structure Of The Catalytic Domain Of The He 7e-36
1yk9_A204 Crystal Structure Of A Mutant Form Of The Mycobacte 1e-34
2wz1_A219 Structure Of The Catalytic Domain Of Human Soluble 6e-33
3uvj_B220 Crystal Structure Of The Catalytic Domain Of The He 7e-31
1cjk_A217 Complex Of Gs-Alpha With The Catalytic Domains Of M 8e-20
1cs4_A225 Complex Of Gs-Alpha With The Catalytic Domains Of M 8e-20
1azs_A220 Complex Of Gs-Alpha With The Catalytic Domains Of M 8e-20
1ab8_A220 Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COM 1e-17
1azs_B212 Complex Of Gs-Alpha With The Catalytic Domains Of M 2e-17
1cul_B208 Complex Of Gs-Alpha With The Catalytic Domains Of M 2e-17
3r5g_A198 Crystal Structure Of The Adenylyl Cyclase Cyab From 7e-10
1wc0_A219 Soluble Adenylyl Cyclase Cyac From S. Platensis In 2e-08
1wc1_A226 Soluble Adenylyl Cyclase Cyac From S. Platensis In 3e-08
2w01_A208 Crystal Structure Of The Guanylyl Cyclase Cya2 Leng 3e-08
1y10_A407 Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme, 2e-05
1fx2_A235 Structural Analysis Of Adenylate Cyclases From Tryp 2e-04
1fx4_A231 Structure Analysis Of Adenylate Cyclases From Trypa 7e-04
>pdb|3ET6|A Chain A, The Crystal Structure Of The Catalytic Domain Of A Eukaryotic Guanylate Cyclase Length = 190 Back     alignment and structure 
Iteration: 1

 Score =  166 bits (420), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 88/178 (49%), Positives = 113/178 (63%), Gaps = 3/178 (1%)
Query: 173 EVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAY-NVYKVETIGDAYMVVGG 231
           E T+ FSDIVGFT I++ S+P EV  LL++LY  FDA I  Y  +YKVETIGDAYMVV  
Sbjct: 9   EATVLFSDIVGFTEIASRSSPLEVXSLLDELYQRFDAAIEEYPQLYKVETIGDAYMVVCN 68
Query: 232 LPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRYC 291
           + V   DHAD +   AL +  H    ++      P+R+R+G+H+GP  AGVVG  MPR+ 
Sbjct: 69  VTVPCDDHADVLLEFALRM--HEEASRVASSLGEPVRIRVGMHSGPVVAGVVGRKMPRFX 126
Query: 292 LFGDTVNTASRLESTGAPWRIHLSADTKAKLDQVGDYQLEYRGETELKGKGKMPTYWL 349
           LFGDTVNTASR+ES G   +IH+S      L     +++  RG   +KGKG M TY L
Sbjct: 127 LFGDTVNTASRMESHGEAGQIHISEACYCCLRSKERFEIRERGNITVKGKGTMRTYLL 184
>pdb|3ET6|B Chain B, The Crystal Structure Of The Catalytic Domain Of A Eukaryotic Guanylate Cyclase Length = 190 Back     alignment and structure
>pdb|3UVJ|A Chain A, Crystal Structure Of The Catalytic Domain Of The Heterodimeric Human Soluble Guanylate Cyclase 1. Length = 225 Back     alignment and structure
>pdb|1YK9|A Chain A, Crystal Structure Of A Mutant Form Of The Mycobacterial Adenylyl Cyclase Rv1625c Length = 204 Back     alignment and structure
>pdb|2WZ1|A Chain A, Structure Of The Catalytic Domain Of Human Soluble Guanylate Cyclase 1 Beta 3. Length = 219 Back     alignment and structure
>pdb|3UVJ|B Chain B, Crystal Structure Of The Catalytic Domain Of The Heterodimeric Human Soluble Guanylate Cyclase 1. Length = 220 Back     alignment and structure
>pdb|1CJK|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With Adenosine 5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn Length = 217 Back     alignment and structure
>pdb|1CS4|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With 2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And Mg Length = 225 Back     alignment and structure
>pdb|1AZS|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase Length = 220 Back     alignment and structure
>pdb|1AB8|A Chain A, Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COMPLEX Length = 220 Back     alignment and structure
>pdb|1AZS|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase Length = 212 Back     alignment and structure
>pdb|1CUL|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With 2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg Length = 208 Back     alignment and structure
>pdb|3R5G|A Chain A, Crystal Structure Of The Adenylyl Cyclase Cyab From P. Aeruginosa Length = 198 Back     alignment and structure
>pdb|1WC0|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex With Alpha,Beta-Methylene-Atp Length = 219 Back     alignment and structure
>pdb|1WC1|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex With Rp-atpalphas Length = 226 Back     alignment and structure
>pdb|2W01|A Chain A, Crystal Structure Of The Guanylyl Cyclase Cya2 Length = 208 Back     alignment and structure
>pdb|1Y10|A Chain A, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme, Inhibited State Length = 407 Back     alignment and structure
>pdb|1FX2|A Chain A, Structural Analysis Of Adenylate Cyclases From Trypanosoma Brucei In Their Monomeric State Length = 235 Back     alignment and structure
>pdb|1FX4|A Chain A, Structure Analysis Of Adenylate Cyclases From Trypanosoma Brucei In Their Monomeric State Length = 231 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query487
1yk9_A204 Adenylate cyclase; beta-alpha-beta sandwich, struc 1e-120
3uvj_A225 Guanylate cyclase soluble subunit alpha-3; nitric 1e-118
2wz1_A219 Guanylate cyclase soluble subunit beta-1; lyase, G 1e-116
3et6_A190 Soluble guanylyl cyclase beta; guanylate cyclase, 1e-110
1ab8_A220 Adenylyl cyclase; lyase, complex (transferase-inhi 1e-107
1azs_A220 VC1; complex (lyase/hydrolase), hydrolase, signal 1e-104
1y10_A407 Hypothetical protein RV1264/MT1302; adenylyl cycla 2e-68
1fx2_A235 Receptor-type adenylate cyclase gresag 4.1; CAMP, 1e-64
2w01_A208 Adenylate cyclase; guanylyl cyclase, class III nuc 1e-38
1wc3_A219 Adenylate cyclase; soluble adenylyl cyclase, CAMP 2e-37
3r5g_A198 CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas 2e-36
1ybt_A184 Hydrolase, alpha/beta hydrolase fold family; cycla 2e-35
3mr7_A189 Adenylate/guanylate cyclase/hydrolase, alpha/beta 3e-32
3hls_A66 Guanylate cyclase soluble subunit beta-1; coiled-c 3e-12
3hls_A66 Guanylate cyclase soluble subunit beta-1; coiled-c 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 4e-05
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics, PSI, protein structure initiative; 2.70A {Mycobacterium tuberculosis} Length = 204 Back     alignment and structure
 Score =  348 bits (895), Expect = e-120
 Identities = 75/207 (36%), Positives = 118/207 (57%), Gaps = 4/207 (1%)

Query: 165 PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGD 224
            +  + + E ++ F+DIVGFT  ++ + P ++V  L+ LY+ FD  ++ + + K+E  GD
Sbjct: 2   NIIADKYDEASVLFADIVGFTERASSTAPADLVRFLDRLYSAFDELVDQHGLEKIEVSGD 61

Query: 225 AYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAGVVG 284
           +YMVV G+P   PDH   +A  ALD+ + + + K       P+ LR+GL TGP  AGVVG
Sbjct: 62  SYMVVSGVPRPRPDHTQALADFALDMTNVAAQLKDPR--GNPVPLRVGLATGPVVAGVVG 119

Query: 285 LTMPRYCLFGDTVNTASRLESTGAPWRIHLSADTKAKLDQVGDYQLEYRGETELKGKGKM 344
               RYC++GD VN ASR+EST +  +I +  +   +L    D+ L  RG   +KGKG M
Sbjct: 120 SRRFRYCVWGDAVNVASRMESTDSVGQIQVPDEVYERLK--DDFVLRERGHINVKGKGVM 177

Query: 345 PTYWLLGKKGFYKELPTPPPLGDSHGL 371
            T++L+G+K              + G+
Sbjct: 178 RTWYLIGRKVAADPGEVRGAEPRTAGV 204
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural genomics, structural genomics conso SGC, CGMP biosynthesis; 2.08A {Homo sapiens} Length = 225 Back     alignment and structure
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1, metal-binding, CGMP biosynthesis, nucleotide-B cyclase, GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B Length = 219 Back     alignment and structure
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic, lyase, membrane, transmembrane; 2.55A {Chlamydomonas reinhardtii} PDB: 3et6_B Length = 190 Back     alignment and structure
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK; 2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B* 1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B* 2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B* 3maa_B* 1cul_B* Length = 220 Back     alignment and structure
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A* 1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A* 3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A* 1tl7_A* Length = 220 Back     alignment and structure
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase; HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB: 1y11_A* Length = 407 Back     alignment and structure
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes, adenylyl cyclases, monomer-dimer, catalysis, lyase; 1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A Length = 235 Back     alignment and structure
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase, lyase; 2.31A {Synechocystis SP} Length = 208 Back     alignment and structure
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase; HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1 PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A* Length = 219 Back     alignment and structure
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa} Length = 198 Back     alignment and structure
>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis} PDB: 1ybu_A* Length = 184 Back     alignment and structure
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.60A {Ruegeria pomeroyi} Length = 189 Back     alignment and structure
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain, signaling helix, S-helix, CGMP biosynthesis, cytoplasm, GTP-binding, heme, iron; 2.15A {Rattus norvegicus} Length = 66 Back     alignment and structure
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain, signaling helix, S-helix, CGMP biosynthesis, cytoplasm, GTP-binding, heme, iron; 2.15A {Rattus norvegicus} Length = 66 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query487
2wz1_A219 Guanylate cyclase soluble subunit beta-1; lyase, G 100.0
1ab8_A220 Adenylyl cyclase; lyase, complex (transferase-inhi 100.0
3et6_A190 Soluble guanylyl cyclase beta; guanylate cyclase, 100.0
3uvj_A225 Guanylate cyclase soluble subunit alpha-3; nitric 100.0
1yk9_A204 Adenylate cyclase; beta-alpha-beta sandwich, struc 100.0
2w01_A208 Adenylate cyclase; guanylyl cyclase, class III nuc 100.0
1azs_A220 VC1; complex (lyase/hydrolase), hydrolase, signal 100.0
3r5g_A198 CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas 100.0
1y10_A407 Hypothetical protein RV1264/MT1302; adenylyl cycla 100.0
1wc3_A219 Adenylate cyclase; soluble adenylyl cyclase, CAMP 100.0
1fx2_A235 Receptor-type adenylate cyclase gresag 4.1; CAMP, 100.0
1ybt_A184 Hydrolase, alpha/beta hydrolase fold family; cycla 100.0
3mr7_A189 Adenylate/guanylate cyclase/hydrolase, alpha/beta 100.0
3hls_A66 Guanylate cyclase soluble subunit beta-1; coiled-c 97.78
3hls_A66 Guanylate cyclase soluble subunit beta-1; coiled-c 97.22
3i5c_A206 Fusion of general control protein GCN4 and WSPR R 95.69
2qv6_A268 MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY 92.85
3hva_A177 Protein FIMX; ggdef diguanylate cyclase, biofilm, 92.62
3pjx_A430 Cyclic dimeric GMP binding protein; ggdef-EAL tand 92.4
3ign_A177 Diguanylate cyclase; ggdef domain, A1U3W3_marav, N 92.1
3tvk_A179 DGC, diguanylate cyclase YDEH; putative zinc senso 91.43
3icl_A171 EAL/ggdef domain protein; structural genomics, PSI 91.16
3mtk_A178 Diguanylate cyclase/phosphodiesterase; structural 91.12
3ezu_A342 Ggdef domain protein; multidomain protein of unkno 90.71
3m2w_A299 MAP kinase-activated protein kinase 2; small molec 89.99
3hvw_A176 Diguanylate-cyclase (DGC); alpha-beta protein., st 89.81
3oz6_A388 Mitogen-activated protein kinase 1, serine/threon 88.78
3bre_A358 Probable two-component response regulator; protein 87.82
3qyy_A167 Response regulator; C-DI-GMP, DGC, ggdef, competit 87.77
1nxk_A400 MAP kinase-activated protein kinase 2; MK2, phosph 86.35
3op5_A364 Serine/threonine-protein kinase VRK1; adenosine tr 82.39
3kex_A325 Receptor tyrosine-protein kinase ERBB-3; kinase do 82.06
1w25_A459 Stalked-cell differentiation controlling protein; 81.34
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1, metal-binding, CGMP biosynthesis, nucleotide-B cyclase, GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B Back     alignment and structure
Probab=100.00  E-value=1.8e-40  Score=320.11  Aligned_cols=190  Identities=42%  Similarity=0.706  Sum_probs=174.1

Q ss_pred             CCCCCCCCceeEEEEEEecCCchhhhccCC----chhHHHHHHHHHHHHHHhhh---hcCcEEEeeeCCEEEEEecCCCC
Q psy13820        163 GMPVDPEDFREVTIYFSDIVGFTTISAYST----PFEVVDLLNDLYTCFDATIN---AYNVYKVETIGDAYMVVGGLPVR  235 (487)
Q Consensus       163 g~~~~~~~~~~vTVLF~DIvgFT~ls~~~~----p~evv~lLn~~~~~~~~ii~---~~gG~~vk~iGD~~mavfGlp~~  235 (487)
                      |++..+++++++||||+||+|||.+++.++    |++++.+||.+|..+++++.   .|+|+++|++||++||+||.|..
T Consensus         2 G~~~~~~~~~~vtvlF~DI~gfT~l~e~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~g~~~k~~GD~~ma~fg~p~~   81 (219)
T 2wz1_A            2 KRPVPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVETVGDKYMTVSGLPEP   81 (219)
T ss_dssp             ---CCCEEEEEEEEEEEEETTHHHHHHHSCCC--HHHHHHHHHHHHHHHHHHHCTTTCTTCEEECCCTTCEEEEESSSSC
T ss_pred             CCccCccceeeEEEEEEEccCcHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCEEEEeecCCEEEEEECCCCC
Confidence            667788899999999999999999999999    99999999999999999999   89999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhcCCCCCCeEEEEeeeecceEEeEeCCCCCcceeeCcHHHHHHHHHhcCCCCcEEec
Q psy13820        236 IPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRYCLFGDTVNTASRLESTGAPWRIHLS  315 (487)
Q Consensus       236 ~~~~a~~a~~~Al~i~~~l~~~~~~~~~~~~l~vRIGIhtG~Vv~GvvG~~~~~y~v~GdtVN~AsRLes~a~~g~IlVS  315 (487)
                      .++|+.+|++||++|++.+..++..   ..++.+|||||+|+|++|++|..+++|++||++||+|+||++.+.+++|+||
T Consensus        82 ~~~~a~~A~~~Al~~~~~~~~~~~~---~~~l~~rIGi~~G~v~~G~iG~~~~~~~v~Gd~VN~AaRLe~~a~~~~IlvS  158 (219)
T 2wz1_A           82 CIHHARSICHLALDMMEIAGQVQVD---GESVQITIGIHTGEVVTGVIGQRMPRYCLFGNTVNLTSRTETTGEKGKINVS  158 (219)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTTCEET---TEECCEEEEEEEEEEEEEEECSSSCEEEEESHHHHHHHHHHHTSCTTSEEEE
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHhcc---CCceEEEEEEEEEEEEEEEeCCCceEEEEECHHHHHHHHHHhcCCCCeEEEC
Confidence            9999999999999999999887642   5679999999999999999999877999999999999999999999999999


Q ss_pred             HHHHHHhh----cCCCeeEEEeceEEecCcCcceEEEEecccCC
Q psy13820        316 ADTKAKLD----QVGDYQLEYRGETELKGKGKMPTYWLLGKKGF  355 (487)
Q Consensus       316 e~t~~~L~----~~~~f~~~~~G~i~lKGkg~~~ty~l~~~~~~  355 (487)
                      +++++.+.    ....|.++++|.+.+||++.+.++|.+.....
T Consensus       159 ~~~~~~l~~~~~~~~~~~~~~~g~~~lKG~~~~~~vy~l~~~~~  202 (219)
T 2wz1_A          159 EYTYRCLMSPENSDPQFHLEHRGPVSMKGKKEPMQVWFLSRKNT  202 (219)
T ss_dssp             HHHHHHTTSTTTCCTTEEEEEEEEECCTTCSSCEEEEEEEESCC
T ss_pred             HHHHHHHhhhcccCCceEEEEeCCEEecCCCccEEEEEEeccCc
Confidence            99999996    22579999999999999999988888776543
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK; 2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B* 1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B* 2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B* 3maa_B* 1cul_B* Back     alignment and structure
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic, lyase, membrane, transmembrane; 2.55A {Chlamydomonas reinhardtii} PDB: 3et6_B Back     alignment and structure
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural genomics, structural genomics conso SGC, CGMP biosynthesis; 2.08A {Homo sapiens} Back     alignment and structure
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics, PSI, protein structure initiative; 2.70A {Mycobacterium tuberculosis} Back     alignment and structure
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase, lyase; 2.31A {Synechocystis SP} Back     alignment and structure
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A* 1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A* 3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A* 1tl7_A* Back     alignment and structure
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa} SCOP: d.58.29.0 Back     alignment and structure
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase; HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB: 1y11_A* Back     alignment and structure
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase; HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1 PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A* Back     alignment and structure
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes, adenylyl cyclases, monomer-dimer, catalysis, lyase; 1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A Back     alignment and structure
>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis} PDB: 1ybu_A* Back     alignment and structure
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.60A {Ruegeria pomeroyi} Back     alignment and structure
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain, signaling helix, S-helix, CGMP biosynthesis, cytoplasm, GTP-binding, heme, iron; 2.15A {Rattus norvegicus} Back     alignment and structure
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain, signaling helix, S-helix, CGMP biosynthesis, cytoplasm, GTP-binding, heme, iron; 2.15A {Rattus norvegicus} Back     alignment and structure
>3i5c_A Fusion of general control protein GCN4 and WSPR R regulator protein; C-DI-GMP, ggdef, leucine zipper, signaling protein; HET: C2E; 1.94A {Pseudomonas aeruginosa PAO1} PDB: 3i5b_A* Back     alignment and structure
>2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A {Methanocaldococcus jannaschii} Back     alignment and structure
>3hva_A Protein FIMX; ggdef diguanylate cyclase, biofilm, C-DI-GMP, transferase; 2.04A {Pseudomonas aeruginosa PAO1} Back     alignment and structure
>3pjx_A Cyclic dimeric GMP binding protein; ggdef-EAL tandem domain, C-DI-GMP receptor, lyase; 2.00A {Pseudomonas fluorescens} PDB: 3pjw_A 3pju_A* 3pjt_A* 3pfm_A Back     alignment and structure
>3ign_A Diguanylate cyclase; ggdef domain, A1U3W3_marav, NESG, MQR89A, structural genomics, PSI-2, protein structure initiative; HET: C2E; 1.83A {Marinobacter aquaeolei VT8} Back     alignment and structure
>3tvk_A DGC, diguanylate cyclase YDEH; putative zinc sensor, C-DI-GMP, transfe; HET: C2E; 1.80A {Escherichia coli} Back     alignment and structure
>3icl_A EAL/ggdef domain protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics, consortium, NESG; HET: MSE; 2.00A {Methylococcus capsulatus} Back     alignment and structure
>3mtk_A Diguanylate cyclase/phosphodiesterase; structural genomics, PSI-2, protein structure initiative; 2.24A {Caldicellulosiruptor saccharolyticus} Back     alignment and structure
>3ezu_A Ggdef domain protein; multidomain protein of unknown function with GG domain, structural genomics, joint center for structural GE JCSG; 1.95A {Geobacter sulfurreducens} Back     alignment and structure
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Back     alignment and structure
>3hvw_A Diguanylate-cyclase (DGC); alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.70A {Pseudomonas aeruginosa} Back     alignment and structure
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Back     alignment and structure
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A* Back     alignment and structure
>3qyy_A Response regulator; C-DI-GMP, DGC, ggdef, competitive inhibition, xanthomonas Ca signaling protein-inhibitor complex; HET: C2E; 1.90A {Xanthomonas campestris PV} Back     alignment and structure
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Back     alignment and structure
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A Back     alignment and structure
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Back     alignment and structure
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 487
d1azsb_199 d.58.29.1 (B:) Adenylyl cyclase IIC1, domain C2a { 1e-51
d1fx2a_235 d.58.29.1 (A:) Receptor-type monomeric adenylyl cy 7e-43
d1azsa_190 d.58.29.1 (A:) Adenylyl cyclase VC1, domain C1a {D 4e-38
d1wc1a_197 d.58.29.1 (A:) Adenylate cyclase CyaC {Spirulina p 5e-37
>d1azsb_ d.58.29.1 (B:) Adenylyl cyclase IIC1, domain C2a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 199 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleotide cyclase
family: Adenylyl and guanylyl cyclase catalytic domain
domain: Adenylyl cyclase IIC1, domain C2a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  172 bits (435), Expect = 1e-51
 Identities = 58/199 (29%), Positives = 91/199 (45%), Gaps = 21/199 (10%)

Query: 169 EDFREVTIYFSDIVGFTTIS----AYSTPFEVVDLLNDLYTCFDATINA---YNVYKVET 221
           + +  V + F+ I  F              E + LLN++   FD  ++      V K++T
Sbjct: 2   QSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKT 61

Query: 222 IGDAYMVVGGL-----------PVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLR 270
           IG  YM   GL           P R   H   +   A  L+                +LR
Sbjct: 62  IGSTYMAATGLSAIPSQEHAQEPERQYMHIGTMVEFAYALVGKLDAINKHSFN--DFKLR 119

Query: 271 IGLHTGPCCAGVVGLTMPRYCLFGDTVNTASRLESTGAPWRIHLSADTKAKLDQVGDYQL 330
           +G++ GP  AGV+G   P+Y ++G+TVN ASR++STG   +I ++ +T   L  +G Y  
Sbjct: 120 VGINHGPVIAGVIGAQKPQYDIWGNTVNVASRMDSTGVLDKIQVTEETSLILQTLG-YTC 178

Query: 331 EYRGETELKGKGKMPTYWL 349
             RG   +KGKG + TY++
Sbjct: 179 TCRGIINVKGKGDLKTYFV 197
>d1fx2a_ d.58.29.1 (A:) Receptor-type monomeric adenylyl cyclase {Trypanosome (Trypanosoma brucei), different isoform [TaxId: 5691]} Length = 235 Back     information, alignment and structure
>d1azsa_ d.58.29.1 (A:) Adenylyl cyclase VC1, domain C1a {Dog (Canis familiaris) [TaxId: 9615]} Length = 190 Back     information, alignment and structure
>d1wc1a_ d.58.29.1 (A:) Adenylate cyclase CyaC {Spirulina platensis [TaxId: 118562]} Length = 197 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query487
d1azsb_199 Adenylyl cyclase IIC1, domain C2a {Rat (Rattus nor 100.0
d1azsa_190 Adenylyl cyclase VC1, domain C1a {Dog (Canis famil 100.0
d1wc1a_197 Adenylate cyclase CyaC {Spirulina platensis [TaxId 100.0
d1fx2a_235 Receptor-type monomeric adenylyl cyclase {Trypanos 99.97
d1w25a3162 Response regulator PleD, C-terminal domain {Caulob 91.08
d1xkka_317 EGF receptor tyrosine kinase, Erbb-1 {Human (Homo 88.94
>d1azsb_ d.58.29.1 (B:) Adenylyl cyclase IIC1, domain C2a {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleotide cyclase
family: Adenylyl and guanylyl cyclase catalytic domain
domain: Adenylyl cyclase IIC1, domain C2a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.5e-39  Score=306.90  Aligned_cols=179  Identities=31%  Similarity=0.546  Sum_probs=161.9

Q ss_pred             CCceeEEEEEEecCCchhhhccCC----chhHHHHHHHHHHHHHHhhhh---cCcEEEeeeCCEEEEEecCCCCC-----
Q psy13820        169 EDFREVTIYFSDIVGFTTISAYST----PFEVVDLLNDLYTCFDATINA---YNVYKVETIGDAYMVVGGLPVRI-----  236 (487)
Q Consensus       169 ~~~~~vTVLF~DIvgFT~ls~~~~----p~evv~lLn~~~~~~~~ii~~---~gG~~vk~iGD~~mavfGlp~~~-----  236 (487)
                      +.+.+|||||+||+|||.+++.++    |.+++++||.+|..|+.++.+   |||+++|++||+|||+||+|...     
T Consensus         2 ~~~~~vtvlF~Di~gfT~l~~~~~~~~~~~~~~~~Ln~~~~~fd~~~~~~~~~g~~~~k~iGD~~~a~~g~~~~~~~~~a   81 (199)
T d1azsb_           2 QSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGSTYMAATGLSAIPSQEHA   81 (199)
T ss_dssp             CEEEEEEEEEEECTTHHHHCCCCTTTTTTHHHHHHHHHHHHHHHGGGGSGGGTTEEEEEEETTEEEEEESSSCC------
T ss_pred             CCCCcEEEEEEEcCCChHHHHhCCcccCHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecCeEEEEecCCCCcccccc
Confidence            467899999999999999988764    678999999999999999887   89999999999999999997532     


Q ss_pred             ------chhHHHHHHHHHHHHHHhhhhhhcCCCCCCeEEEEeeeecceEEeEeCCCCCcceeeCcHHHHHHHHHhcCCCC
Q psy13820        237 ------PDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGPCCAGVVGLTMPRYCLFGDTVNTASRLESTGAPW  310 (487)
Q Consensus       237 ------~~~a~~a~~~Al~i~~~l~~~~~~~~~~~~l~vRIGIhtG~Vv~GvvG~~~~~y~v~GdtVN~AsRLes~a~~g  310 (487)
                            ..++.+|++||++|++.+.+++...  ..++++|||||+|+|++|++|..+++|++|||+||+|+|||+.|+||
T Consensus        82 ~~~~~~~~~~~~av~~a~~~~~~~~~~~~~~--~~~l~~rIGIh~G~v~~Gv~g~~~~~y~v~Gd~VN~AaRle~~a~~g  159 (199)
T d1azsb_          82 QEPERQYMHIGTMVEFAYALVGKLDAINKHS--FNDFKLRVGINHGPVIAGVIGAQKPQYDIWGNTVNVASRMDSTGVLD  159 (199)
T ss_dssp             ----CTTHHHHHHHHHHHHHHHHHHHHHHHH--TCCCCCEEEEEEEEEEEEEECSSSCEEEEESHHHHHHHHHHHTCCTT
T ss_pred             cchHHHHHhHHHHHHHHHHHHHHhhhccccC--CCCeeEEeeeeecCceeeeeccccccccccchHHHHHHHHHhcCCCC
Confidence                  2478899999999999988776543  34789999999999999999999889999999999999999999999


Q ss_pred             cEEecHHHHHHhhcCCCeeEEEeceEEecCcCcceEEEEe
Q psy13820        311 RIHLSADTKAKLDQVGDYQLEYRGETELKGKGKMPTYWLL  350 (487)
Q Consensus       311 ~IlVSe~t~~~L~~~~~f~~~~~G~i~lKGkg~~~ty~l~  350 (487)
                      +|+||++|++.+.+ ..|.++++|.+.|||||.+.||||.
T Consensus       160 ~I~vS~~t~~~l~~-~~~~~~~~g~i~vKGkg~~~ty~l~  198 (199)
T d1azsb_         160 KIQVTEETSLILQT-LGYTCTCRGIINVKGKGDLKTYFVN  198 (199)
T ss_dssp             EEEEEHHHHHHHHH-TTCCEEEEEEEEETTTEEEEEEEEC
T ss_pred             eEEECHHHHHHHhc-CCeEEEEeCCEEecCCCeEEEEEEe
Confidence            99999999999986 4799999999999999999999984
>d1azsa_ d.58.29.1 (A:) Adenylyl cyclase VC1, domain C1a {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d1wc1a_ d.58.29.1 (A:) Adenylate cyclase CyaC {Spirulina platensis [TaxId: 118562]} Back     information, alignment and structure
>d1fx2a_ d.58.29.1 (A:) Receptor-type monomeric adenylyl cyclase {Trypanosome (Trypanosoma brucei), different isoform [TaxId: 5691]} Back     information, alignment and structure
>d1w25a3 d.58.29.2 (A:294-455) Response regulator PleD, C-terminal domain {Caulobacter crescentus [TaxId: 155892]} Back     information, alignment and structure
>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure